Citrus Sinensis ID: 039455

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210------
Protein Sequence
RESELIKDIVKEISKRLNPTFPSAVDGLVGIASRMEKMNGYLEAGLDDVRFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLANVREVSVTRGLVPLQEQLLSEVLMERNLIIWDVHKGINLIRWRLCRKRVLVVLDDVDQLEQLQALAGNHDWFGFGSRIIITTRDEHVLKGHGVTNIYKVRGLDYVEALQLFHLKVSKGKQPTDDRVELSKCV
Secondary Structure (PSIPRED)
cHHHHHHHHHHHHHHHccccccccccccccccHHHHHHHHHHccccccEEEEEEEcccccHHHHHHHHHHHHHHccccccccccccHHHHcccccHHHHHHHHHHHHccccEEEEcccccHHHHHHHHccccEEEEEcccccHHHHHHHHccccccccccEEEEEcccHHHHHHcccccEEEcccccHHHHHHHHHHHccccccccccHHHHcccc
Secondary Structure Prediction (SSPRO)
cHHHHHHHHHHHHHHHHccccccccccccccHHHHHHHHHHHccccccEEEEEEEccccccHHHHHHHHHHHHHHccccHHHHHHHHHccccccHHHHHHHHHHHHHcccccEEccHHHcHHHHHHHHcccEEEEEEccccHHHHHHHHHccccccccccEEEEEEccHHHHHHccccEEEEEccccHHHHHHHHHHHHHccccccccHHHHHHcc
Coil and Loop (DISEMBL)
RESELIKDIVKEISKrlnptfpsavDGLVGIASRMEKMNGYLeaglddvrfigicgmggigkTTLAKVLYNTLKDQFEASSFLANVREVSVTRGLVPLQEQLLSEVLMERNLIIWDVHKGINLIRWRLCRKRVLVVLDDVDQLEQLQALAgnhdwfgfgsriiittrdehvlkghgvtniykvrgLDYVEALQLFHLKvskgkqptddrvelskcv
Flexible Loop (DISEMBL)
RESELIKDIVKeiskrlnptfpsaVDGLVGIASRMEKMNGYLEAGLDDVRFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLANVREVSVTRGLVPLQEQLLSEVLMERNLIIWDVHKGINLIRWRLCRKRVLVVLDDVDQLEQLQAlagnhdwfgfGSRIIITtrdehvlkghgVTNIYKVRGLDYVEALQLFHlkvskgkqptddrvelskcv
Low Complexity Region (SEG)
RESELIKDIVKEISKRLNPTFPSAVDGLVGIASRMEKMNGYLEAGLDDVRFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLANVREVSVTRGLVPLQEQLLSEVLMERNLIIWDVHKGINLIRWRLCRKRvlvvlddvdqleqlqALAGNHDWFGFGSRIIITTRDEHVLKGHGVTNIYKVRGLDYVEALQLFHLKVSKGKQPTDDRVELSKCV
Disordered region (IsUnstruct)
********IVKEISKRLNPTFPSAVDGLVGIASRMEKMNGYLEAGLDDVRFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLANVREVSVTRGLVPLQEQLLSEVLMERNLIIWDVHKGINLIRWRLCRKRVLVVLDDVDQLEQLQALAGNHDWFGFGSRIIITTRDEHVLKGHGVTNIYKVRGLDYVEALQLFHLKV*****************
Disordered Region (DISOPRED)
RESELIKDIVKEISKRLNPTFPSAVDGLVGIASRMEKMNGYLEAGLDDVRFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLANVREVSVTRGLVPLQEQLLSEVLMERNLIIWDVHKGINLIRWRLCRKRVLVVLDDVDQLEQLQALAGNHDWFGFGSRIIITTRDEHVLKGHGVTNIYKVRGLDYVEALQLFHLKVSKGKQPTDDRVELSKCV
Disordered Region (DISEMBL)
RESELIKDIVKEISKRLNPTFPSAVDGLVGIASRMEKMNGYLEAGLDDVRFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLANVREVSVTRGLVPLQEQLLSEVLMERNLIIWDVHKGINLIRWRLCRKRVLVVLDDVDQLEQLQALAGNHDWFGFGSRIIITTRDEHVLKGHGVTNIYKVRGLDYVEALQLFHLKVSK***************
Disordered Region (DISPRO)
RESELIKDIVKEISKRLNPTFPSAVDGLVGIASRMEKMNGYLEAGLDDVRFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLANVREVSVTRGLVPLQEQLLSEVLMERNLIIWDVHKGINLIRWRLCRKRVLVVLDDVDQLEQLQALAGNHDWFGFGSRIIITTRDEHVLKGHGVTNIYKVRGLDYVEALQLFHLKVSKGKQPTDDRVELSKCV
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
RESELIKDIVKEISKRLNPTFPSAVDGLVGIASRMEKMNGYLEAGLDDVRFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLANVREVSVTRGLVPLQEQLLSEVLMERNLIIWDVHKGINLIRWRLCRKRVLVVLDDVDQLEQLQALAGNHDWFGFGSRIIITTRDEHVLKGHGVTNIYKVRGLDYVEALQLFHLKVSKGKQPTDDRVELSKCV
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	216	2.2.26 [Sep-21-2011]
Q40392	1144	TMV resistance protein N	N/A	no	0.958	0.180	0.392	5e-32
O82500	1095	Putative disease resistan	no	no	0.939	0.185	0.366	7e-31
Q9FKN7	1613	Protein DA1-related 4 OS=	no	no	0.953	0.127	0.367	2e-25
Q9FL92	1372	Probable WRKY transcripti	no	no	0.875	0.137	0.356	2e-24
O23530	1301	Protein SUPPRESSOR OF npr	no	no	0.953	0.158	0.328	2e-21
Q9FH83	1288	Probable WRKY transcripti	no	no	0.754	0.126	0.382	5e-21
Q9SZ67	1895	Probable WRKY transcripti	no	no	0.875	0.099	0.341	1e-19
Q9M667	835	Disease resistance protei	no	no	0.768	0.198	0.322	6e-08
Q9SX38	857	Putative disease resistan	no	no	0.666	0.168	0.329	1e-07
Q9FG91	848	Probable disease resistan	no	no	0.828	0.211	0.306	1e-07

>sp|Q40392|TMVRN_NICGU TMV resistance protein N OS=Nicotiana glutinosa GN=N PE=1 SV=1

 Score =  137 bits (345), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 86/219 (39%), Positives = 136/219 (62%), Gaps = 12/219 (5%)

Query: 2   ESELIKDIVKEISKRLNPTFPSAVDGLVGIASRMEKMNGYLEAGLDDVRFIGICGMGGIG 61
           +++ I+ IV +IS +L     S +  +VGI + +EK+   LE G++ VR +GI GMGG+G
Sbjct: 162 DADCIRQIVDQISSKLCKISLSYLQNIVGIDTHLEKIESLLEIGINGVRIMGIWGMGGVG 221

Query: 62  KTTLAKVLYNTL------KDQFEASSFLANVREVSVTRGLVPLQEQLLSEVLMERNLIIW 115
           KTT+A+ +++TL        QF+ + FL +++E    RG+  LQ  LLSE+L E+     
Sbjct: 222 KTTIARAIFDTLLGRMDSSYQFDGACFLKDIKENK--RGMHSLQNALLSELLREKANYN- 278

Query: 116 DVHKGINLIRWRLCRKRVLVVLDDVDQLEQ-LQALAGNHDWFGFGSRIIITTRDEHVLKG 174
           +   G + +  RL  K+VL+VLDD+D  +  L+ LAG+ DWFG GSRIIITTRD+H+++ 
Sbjct: 279 NEEDGKHQMASRLRSKKVLIVLDDIDNKDHYLEYLAGDLDWFGNGSRIIITTRDKHLIEK 338

Query: 175 HGVTNIYKVRGLDYVEALQLFHLKVSKGKQPTDDRVELS 213
           + +  IY+V  L   E++QLF       + P ++  +LS
Sbjct: 339 NDI--IYEVTALPDHESIQLFKQHAFGKEVPNENFEKLS 375

Disease resistance protein. Resistance proteins guard the plant against pathogens that contain an appropriate avirulence protein via a direct or indirect interaction with this avirulence protein. That triggers a defense system including the hypersensitive response, which restricts the pathogen growth.
Nicotiana glutinosa (taxid: 35889)

>sp|O82500|Y4117_ARATH Putative disease resistance protein At4g11170 OS=Arabidopsis thaliana GN=At4g11170 PE=2 SV=1

 Score =  134 bits (336), Expect = 7e-31,   Method: Compositional matrix adjust.
 Identities = 78/213 (36%), Positives = 123/213 (57%), Gaps = 10/213 (4%)

Query: 2   ESELIKDIVKEISKRLNPTFPSAVDGLVGIASRMEKMNGYLEAGLDDVRFIGICGMGGIG 61
           E+  I  I K++ ++LN T     + LVG+ + + KM   L      VR +GI G  G+G
Sbjct: 158 EAYKITTISKDVLEKLNATPSRDFNDLVGMEAHIAKMESLLCLESQGVRIVGIWGPAGVG 217

Query: 62  KTTLAKVLYNTLKDQFEASSFLANVREVSVTRGL------VPLQEQLLSEVLMERNLIIW 115
           KTT+A+ LYN   + F  S F+ NVRE     GL      + LQ++ LS++L +++L + 
Sbjct: 218 KTTIARALYNQYHENFNLSIFMENVRESYGEAGLDDYGLKLHLQQRFLSKLLDQKDLRV- 276

Query: 116 DVHKGINLIRWRLCRKRVLVVLDDVDQLEQLQALAGNHDWFGFGSRIIITTRDEHVLKGH 175
              + +  I  RL  ++VL++LDDVD +EQL+ALA  + WFG  SRI++TT+++ +L  H
Sbjct: 277 ---RHLGAIEERLKSQKVLIILDDVDNIEQLKALAKENQWFGNKSRIVVTTQNKQLLVSH 333

Query: 176 GVTNIYKVRGLDYVEALQLFHLKVSKGKQPTDD 208
            + ++Y+V      EAL +F     K   P+DD
Sbjct: 334 DINHMYQVAYPSKQEALTIFCQHAFKQSSPSDD 366

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FKN7|DAR4_ARATH Protein DA1-related 4 OS=Arabidopsis thaliana GN=DAR4 PE=1 SV=2

 Score =  115 bits (289), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 78/212 (36%), Positives = 115/212 (54%), Gaps = 6/212 (2%)

Query: 2   ESELIKDIVKEISKRLNPTFPSAVDGLVGIASRMEKMNGYLEAGLDDVRFIGICGMGGIG 61
           +SEL+++IV+++  +L P         VGI +R+ ++   L     D+R IGI GM GIG
Sbjct: 148 DSELVEEIVRDVYGKLYPA------ERVGIYARLLEIEKLLYKQHRDIRSIGIWGMPGIG 201

Query: 62  KTTLAKVLYNTLKDQFEASSFLANVREVSVTRGLVPLQEQLLSEVLMERNLIIWDVHKGI 121
           KTTLAK ++N +   ++AS F+ N  E     GL  L ++ + ++L +   I        
Sbjct: 202 KTTLAKAVFNHMSTDYDASCFIENFDEAFHKEGLHRLLKERIGKILKDEFDIESSYIMRP 261

Query: 122 NLIRWRLCRKRVLVVLDDVDQLEQLQALAGNHDWFGFGSRIIITTRDEHVLKGHGVTNIY 181
            L R +L  KR+LVVLDDV      ++     DWFG GS IIIT+ D+ V     +  IY
Sbjct: 262 TLHRDKLYDKRILVVLDDVRDSLAAESFLKRLDWFGSGSLIIITSVDKQVFAFCQINQIY 321

Query: 182 KVRGLDYVEALQLFHLKVSKGKQPTDDRVELS 213
            V+GL+  EALQLF   V    +P  +  +LS
Sbjct: 322 TVQGLNVHEALQLFSQSVFGINEPEQNDRKLS 353

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FL92|WRK16_ARATH Probable WRKY transcription factor 16 OS=Arabidopsis thaliana GN=WRKY16 PE=2 SV=1

 Score =  112 bits (280), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 71/199 (35%), Positives = 114/199 (57%), Gaps = 10/199 (5%)

Query: 2   ESELIKDIVKEISKRLNPTFPSAVDGLVGIASRMEKMNGYLEAGLDDVRFIGICGMGGIG 61
           +S+L+K+ V+++ ++L           +GI S++ ++   +     D+R +GI GM GIG
Sbjct: 122 DSQLVKETVRDVYEKL------FYMERIGIYSKLLEIEKMINKQPLDIRCVGIWGMPGIG 175

Query: 62  KTTLAKVLYNTLKDQFEASSFLANVREVSVTRGLVPLQEQLLSEVLMERNLIIWDVHKGI 121
           KTTLAK +++ +  +F+A  F+ +  +    +G+      LL E  ++ N         +
Sbjct: 176 KTTLAKAVFDQMSGEFDAHCFIEDYTKAIQEKGVY----CLLEEQFLKENAGASGTVTKL 231

Query: 122 NLIRWRLCRKRVLVVLDDVDQLEQLQALAGNHDWFGFGSRIIITTRDEHVLKGHGVTNIY 181
           +L+R RL  KRVLVVLDDV     +++  G  DWFG  S IIIT++D+ V +   V  IY
Sbjct: 232 SLLRDRLNNKRVLVVLDDVRSPLVVESFLGGFDWFGPKSLIIITSKDKSVFRLCRVNQIY 291

Query: 182 KVRGLDYVEALQLFHLKVS 200
           +V+GL+  EALQLF L  S
Sbjct: 292 EVQGLNEKEALQLFSLCAS 310

Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element. May also act as a disease resistance protein.

Arabidopsis thaliana (taxid: 3702)

>sp|O23530|SNC1_ARATH Protein SUPPRESSOR OF npr1-1, CONSTITUTIVE 1 OS=Arabidopsis thaliana GN=SNC1 PE=1 SV=3

 Score =  102 bits (253), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 71/216 (32%), Positives = 119/216 (55%), Gaps = 10/216 (4%)

Query: 2   ESELIKDIVKEI-SKRLNPTFPSAVDGLVGIASRMEKMNGYLEAGLDDVR-FIGICGMGG 59
           E+ +I+++ +++  K + P+       LVGI + +E +   L     + R  +GI G  G
Sbjct: 158 EAAMIEELAEDVLRKTMTPS--DDFGDLVGIENHIEAIKSVLCLESKEARIMVGIWGQSG 215

Query: 60  IGKTTLAKVLYNTLKDQFEASSFLA--NVREVSVTRGLVPLQEQLLSEVLMERNLIIWDV 117
           IGK+T+ + LY+ L  QF   +F+   +     V+   +  +++LLSE+L ++++ I   
Sbjct: 216 IGKSTIGRALYSKLSIQFHHRAFITYKSTSGSDVSGMKLRWEKELLSEILGQKDIKI--E 273

Query: 118 HKGINLIRWRLCRKRVLVVLDDVDQLEQLQALAGNHDWFGFGSRIIITTRDEHVLKGHGV 177
           H G+  +  RL +++VL++LDDVD LE L+ L G  +WFG GSRII+ T+D  +LK H +
Sbjct: 274 HFGV--VEQRLKQQKVLILLDDVDSLEFLKTLVGKAEWFGSGSRIIVITQDRQLLKAHEI 331

Query: 178 TNIYKVRGLDYVEALQLFHLKVSKGKQPTDDRVELS 213
             IY+V       AL +          P DD  EL+
Sbjct: 332 DLIYEVEFPSEHLALTMLCRSAFGKDSPPDDFKELA 367

Disease resistance protein of the TIR-NB-LRR-type. Part of the RPP5 locus that contains a cluster of several paralogous disease resistance (R) genes. Resistance proteins guard the plant against pathogens that contain an appropriate avirulence protein via an indirect interaction with this avirulence protein. That triggers a defense system including the hypersensitive response, which restricts the pathogen growth. Regulated by RNA silencing. Expression regulated by MOS1 at chromatin level. Negatively regulated at the transcript level by BON1.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FH83|WRK52_ARATH Probable WRKY transcription factor 52 OS=Arabidopsis thaliana GN=WRKY52 PE=2 SV=3

 Score =  101 bits (251), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 68/178 (38%), Positives = 99/178 (55%), Gaps = 15/178 (8%)

Query: 27  GLVGIASRMEKMNGYLEAGLDDVRFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLANV 86
           G +GI S++ ++   +      +R +GI GM GIGKTTLAK +++ +   F+AS F+ + 
Sbjct: 150 GRIGIYSKLLEIENMVNKQPIGIRCVGIWGMPGIGKTTLAKAVFDQMSSAFDASCFIEDY 209

Query: 87  REVSVTRGLVPL-QEQLLS---EVLMERNLIIWDVHKGINLIRWRLCRKRVLVVLDDVDQ 142
            +    +GL  L +EQLL      +M+           ++ +R RL  KRVLVVLDDV  
Sbjct: 210 DKSIHEKGLYCLLEEQLLPGNDATIMK-----------LSSLRDRLNSKRVLVVLDDVRN 258

Query: 143 LEQLQALAGNHDWFGFGSRIIITTRDEHVLKGHGVTNIYKVRGLDYVEALQLFHLKVS 200
               ++     DW G GS IIIT+RD+ V    G+  IY+V+GL+  EA QLF L  S
Sbjct: 259 ALVGESFLEGFDWLGPGSLIIITSRDKQVFCLCGINQIYEVQGLNEKEARQLFLLSAS 316

Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element. Acts also as a disease resistance protein conferring resistance to Ralstonia solanacearum.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SZ67|WRK19_ARATH Probable WRKY transcription factor 19 OS=Arabidopsis thaliana GN=WRKY19 PE=2 SV=1

 Score = 96.3 bits (238), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 67/196 (34%), Positives = 109/196 (55%), Gaps = 7/196 (3%)

Query: 2   ESELIKDIVKEISKRLNPTFPSAVD--GLVGIASRMEKMNGYLEAGLDDVRFIGICGMGG 59
           ESELI +IV++  K L      + D   ++G+  ++E++   L     DVR IGI G  G
Sbjct: 793 ESELIDEIVRDALKVL-----CSADKVNMIGMDMQVEEILSLLCIESLDVRSIGIWGTVG 847

Query: 60  IGKTTLAKVLYNTLKDQFEASSFLANVREVSVTRGLVPLQEQLLSEVLMERNLIIWDVHK 119
           IGKTT+A+ ++  +  Q+E    L ++ +    +G   ++E  LSEVL     +I     
Sbjct: 848 IGKTTIAEEIFRKISVQYETCVVLKDLHKEVEVKGHDAVRENFLSEVLEVEPHVIRISDI 907

Query: 120 GINLIRWRLCRKRVLVVLDDVDQLEQLQALAGNHDWFGFGSRIIITTRDEHVLKGHGVTN 179
             + +R RL RKR+LV+LDDV+    +    G  ++FG GSRII+T+R+  V     + +
Sbjct: 908 KTSFLRSRLQRKRILVILDDVNDYRDVDTFLGTLNYFGPGSRIIMTSRNRRVFVLCKIDH 967

Query: 180 IYKVRGLDYVEALQLF 195
           +Y+V+ LD  ++L L 
Sbjct: 968 VYEVKPLDIPKSLLLL 983

Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element. May act also as a disease resistance protein with a serine/threonine-protein kinase activity.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9M667|RPP13_ARATH Disease resistance protein RPP13 OS=Arabidopsis thaliana GN=RPP13 PE=2 SV=2

 Score = 57.8 bits (138), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 59/183 (32%), Positives = 93/183 (50%), Gaps = 17/183 (9%)

Query: 35  MEKMNGYLEAGLDDVRFI-GICGMGGIGKTTLAKVLYNT--LKDQFEASSFLANVREVSV 91
           +EK+  Y E      RFI  I GMGG+GKT LA+ LYN+  +K++FE  ++    +E   
Sbjct: 174 LEKLLDYEEKN----RFIISIFGMGGLGKTALARKLYNSRDVKERFEYRAWTYVSQEYKT 229

Query: 92  TRGLVPLQEQLLSEVLMERNLIIWDVHKGINLIRWRLCR-KRVLVVLDDVDQLEQL---- 146
              L+ +   L      E   I     + + +  + L   K+ LVV+DD+ + E      
Sbjct: 230 GDILMRIIRSLGMTSGEELEKIRKFAEEELEVYLYGLLEGKKYLVVVDDIWEREAWDSLK 289

Query: 147 QALAGNHDWFGFGSRIIITTRDEHVLKG-HGVTNIYKVRGLDYVEALQLFHLKVSKGKQP 205
           +AL  NH+    GSR+IITTR + V +G  G    +K+R L + E+ +LF  +  +  Q 
Sbjct: 290 RALPCNHE----GSRVIITTRIKAVAEGVDGRFYAHKLRFLTFEESWELFEQRAFRNIQR 345

Query: 206 TDD 208
            D+
Sbjct: 346 KDE 348

Disease resistance protein. Resistance proteins guard the plant against pathogens that contain an appropriate avirulence protein via an indirect interaction with this avirulence protein. That triggers a defense system including the hypersensitive response, which restricts the pathogen growth. In contrast to other resistance proteins, it works independently of ESD1 and NSD1 proteins and does not require the accumulation of salicylic acid, suggesting the existence of an independent signaling pathway. The specificity to avirulence proteins differs in the different cultivars.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SX38|DRL4_ARATH Putative disease resistance protein At1g50180 OS=Arabidopsis thaliana GN=At1g50180 PE=3 SV=2

 Score = 57.0 bits (136), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 53/161 (32%), Positives = 83/161 (51%), Gaps = 17/161 (10%)

Query: 20  TFPSAVD-GLVGIASRMEKMNGYLEAGLDDVRFIGICGMGGIGKTTLAKVLYNTLK---- 74
           +FP  V+  LVG+   +EK+   L +G + +R   ICGMGG+GKTTLAK +++  K    
Sbjct: 155 SFPYVVEHNLVGLEQSLEKLVNDLVSGGEKLRVTSICGMGGLGKTTLAKQIFHHHKVRRH 214

Query: 75  -DQFEASSFLANVREVSVTRGLVPLQEQLLSEVLMERNLIIWDVHKGINLIRWRLCRKRV 133
            D+F       + R   V + +      L  +   +R L + D   G  L R+ L R + 
Sbjct: 215 FDRFAWVYVSQDCRRRHVWQDIFL---NLSYKDENQRILSLRDEQLGEELHRF-LKRNKC 270

Query: 134 LVVLDDV---DQLEQLQALAGNHDWFGFGSRIIITTRDEHV 171
           L+VLDD+   D  + L+ +  +      GS II+TTR++ V
Sbjct: 271 LIVLDDIWGKDAWDCLKHVFPHET----GSEIILTTRNKEV 307

Potential disease resistance protein.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FG91|DRL32_ARATH Probable disease resistance protein At5g43730 OS=Arabidopsis thaliana GN=At5g43730 PE=2 SV=1

 Score = 57.0 bits (136), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 62/202 (30%), Positives = 94/202 (46%), Gaps = 23/202 (11%)

Query: 24  AVDGLVGIASRMEKMNGYLEAGLDD-VRFIGICGMGGIGKTTLAKVLYNT---LKDQFEA 79
            +D +VGIA          E+ +DD +R +G+ GMGGIGKTTL + L N    L+ +F+ 
Sbjct: 155 GLDTMVGIA---------WESLIDDEIRTLGLYGMGGIGKTTLLESLNNKFVELESEFDV 205

Query: 80  SSFLANVREVSVTRGLVPLQEQLLSEVLMERNLIIWDVHKGINLIRWRLCRKRVLVVLDD 139
             ++     VS    L  +Q+Q+L  +  ++        K  +LI   L RK+ +++LDD
Sbjct: 206 VIWVV----VSKDFQLEGIQDQILGRLRPDKEWERETESKKASLINNNLKRKKFVLLLDD 261

Query: 140 VDQLEQLQALAGNHDWFGFGSRIIITTRDEHVLKGHGVTNIYKVRGLDYVEALQLFHLKV 199
           +     L  +         GS+I+ TTR + V K        KV  L   EA +LF L V
Sbjct: 262 LWSEVDLIKIGVPPPSRENGSKIVFTTRSKEVCKHMKADKQIKVDCLSPDEAWELFRLTV 321

Query: 200 ------SKGKQPTDDRVELSKC 215
                 S    P   R+  +KC
Sbjct: 322 GDIILRSHQDIPALARIVAAKC 343

Probable disease resistance protein.

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	216
255547494	1082	TMV resistance protein N, putative [Rici	0.888	0.177	0.597	2e-56
255579570	1116	TMV resistance protein N, putative [Rici	0.981	0.189	0.595	4e-56
399920191	1320	TIR-NBS-LRR [Rosa rugosa]	0.995	0.162	0.502	2e-53
392522154	170	NBS-LRR disease resistance protein NBS17	0.726	0.923	0.649	4e-53
332330340	1157	TIR-NBS-LRR resistance protein muRdr1B [	0.986	0.184	0.493	6e-52
399920215	1083	TIR-NBS-LRR [Rosa rugosa]	0.986	0.196	0.493	1e-51
332330347	628	TIR-NBS-LRR resistance protein muRdr1I [	0.986	0.339	0.493	3e-51
55669339	170	NBS-LRR resistance protein-like [Musa ac	0.722	0.917	0.660	3e-51
255547496	1097	ATP binding protein, putative [Ricinus c	0.981	0.193	0.576	7e-51
360039826	169	NBS-LRR disease resistance protein [Dimo	0.736	0.940	0.662	1e-50

>gi|255547494|ref|XP_002514804.1| TMV resistance protein N, putative [Ricinus communis] gi|223545855|gb|EEF47358.1| TMV resistance protein N, putative [Ricinus communis]

 Score =  224 bits (571), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 116/194 (59%), Positives = 140/194 (72%), Gaps = 2/194 (1%)

Query: 21  FPSAVDGLVGIASRMEKMNGYL-EAGLDDVRFIGICGMGGIGKTTLAKVLYNTLKDQFEA 79
           F SA    VG+ SR+ +M  YL +   DDVRF+GICGMGGIGKTT+A+ +Y  L  +FE 
Sbjct: 182 FSSASKNFVGMNSRLNEMMKYLGKRESDDVRFVGICGMGGIGKTTIARAVYAELSSEFEG 241

Query: 80  SSFLANVREVSVTRGLVPLQEQLLSEVLMERNLIIWDVHKGINLIRWRLCRKRVLVVLDD 139
           S FLANVREV     L  LQEQLLSE LMER + +WD+H G N I+ RL  K+VL++LDD
Sbjct: 242 SCFLANVREVEEKNSL-SLQEQLLSETLMERKITVWDIHAGRNEIKNRLSHKKVLIILDD 300

Query: 140 VDQLEQLQALAGNHDWFGFGSRIIITTRDEHVLKGHGVTNIYKVRGLDYVEALQLFHLKV 199
           V+ LEQL++LAG  DWFG GSRIIITTRDEH+L  HGV  IY+V GL++ EAL+LF LK 
Sbjct: 301 VNHLEQLKSLAGMSDWFGNGSRIIITTRDEHLLLCHGVERIYRVGGLNHDEALRLFSLKA 360

Query: 200 SKGKQPTDDRVELS 213
            K   P DD VELS
Sbjct: 361 FKNDYPADDYVELS 374

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255579570|ref|XP_002530627.1| TMV resistance protein N, putative [Ricinus communis] gi|223529837|gb|EEF31770.1| TMV resistance protein N, putative [Ricinus communis]

 Score =  223 bits (568), Expect = 4e-56,   Method: Compositional matrix adjust.
 Identities = 128/215 (59%), Positives = 160/215 (74%), Gaps = 3/215 (1%)

Query: 2   ESELIKDIVKEISKRLNPT--FPSAVDGLVGIASRMEKMNGYLEAG-LDDVRFIGICGMG 58
           ESELI++I+K++  +L  +     A    VG+ SR+ +M+ YL+ G L+DV FIGI GMG
Sbjct: 160 ESELIEEIIKDVLGKLRKSSLMSGAAMDFVGMNSRLVEMSMYLDMGRLNDVLFIGISGMG 219

Query: 59  GIGKTTLAKVLYNTLKDQFEASSFLANVREVSVTRGLVPLQEQLLSEVLMERNLIIWDVH 118
           GIGKTT+A+V+Y  L  QFE SSFLANVREV    GLVPLQ+QLLSE+LM+ N+ IWD H
Sbjct: 220 GIGKTTIARVVYEELASQFEGSSFLANVREVKEKHGLVPLQQQLLSEILMDGNIAIWDAH 279

Query: 119 KGINLIRWRLCRKRVLVVLDDVDQLEQLQALAGNHDWFGFGSRIIITTRDEHVLKGHGVT 178
            G + I  R+C+KRVL++LDDV+QLEQL+ LAG HDWFG GSRIIITTRDEH+LK HGV 
Sbjct: 280 CGTSEIVNRMCKKRVLLILDDVNQLEQLKLLAGRHDWFGSGSRIIITTRDEHLLKCHGVD 339

Query: 179 NIYKVRGLDYVEALQLFHLKVSKGKQPTDDRVELS 213
            IYKV+GL   E++ LF L+  K   P DD VELS
Sbjct: 340 KIYKVQGLSQDESIHLFCLRAFKSDYPADDYVELS 374

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|399920191|gb|AFP55538.1| TIR-NBS-LRR [Rosa rugosa]

 Score =  214 bits (545), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 109/217 (50%), Positives = 152/217 (70%), Gaps = 2/217 (0%)

Query: 2   ESELIKDIVKEISKRLNPTFP--SAVDGLVGIASRMEKMNGYLEAGLDDVRFIGICGMGG 59
           E+ELI++IV+ +  +++P+     + + LVG+ +++E+++  L+   +DVRFIGI GMGG
Sbjct: 168 ETELIREIVQALWSKVHPSLTVFGSSEKLVGMHTKLEEIDVLLDIETNDVRFIGIWGMGG 227

Query: 60  IGKTTLAKVLYNTLKDQFEASSFLANVREVSVTRGLVPLQEQLLSEVLMERNLIIWDVHK 119
           +GKTTLA+++Y  +  QFE   FLANVREVS T GLV LQ+Q+LS +L E N  +W+V+ 
Sbjct: 228 LGKTTLARLVYEKISHQFEVCVFLANVREVSATHGLVYLQKQILSHILKEENAQVWNVYS 287

Query: 120 GINLIRWRLCRKRVLVVLDDVDQLEQLQALAGNHDWFGFGSRIIITTRDEHVLKGHGVTN 179
           GI +I+   C K VL+VLDDVDQ EQL+ LAG  DWFG  SRIIITTRD HVL  H +  
Sbjct: 288 GITMIKRCFCNKAVLLVLDDVDQSEQLEHLAGEKDWFGLRSRIIITTRDRHVLVTHDIEK 347

Query: 180 IYKVRGLDYVEALQLFHLKVSKGKQPTDDRVELSKCV 216
            Y+++GL+  EALQLF  K  +  +P +D  E SK V
Sbjct: 348 PYELKGLEEDEALQLFSWKAFRKHEPEEDYAEQSKSV 384

Source: Rosa rugosa

Species: Rosa rugosa

Genus: Rosa

Family: Rosaceae

Order: Rosales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|392522154|gb|AFM77946.1| NBS-LRR disease resistance protein NBS17, partial [Dimocarpus longan]

 Score =  213 bits (543), Expect = 4e-53,   Method: Compositional matrix adjust.
 Identities = 102/157 (64%), Positives = 126/157 (80%)

Query: 58  GGIGKTTLAKVLYNTLKDQFEASSFLANVREVSVTRGLVPLQEQLLSEVLMERNLIIWDV 117
           GG+GKTT+A+VLY  L DQ+E S FLANVRE+S  RGL  LQ+ LLS+VL E NL I D 
Sbjct: 1   GGVGKTTIARVLYEQLSDQYEGSCFLANVREISEKRGLAYLQQMLLSKVLKETNLNICDH 60

Query: 118 HKGINLIRWRLCRKRVLVVLDDVDQLEQLQALAGNHDWFGFGSRIIITTRDEHVLKGHGV 177
           H+GINLIR RLC+K+V +VLDDVDQLEQ+Q LAG HDW GFGSRI+ITTRD HVL  +G+
Sbjct: 61  HEGINLIRRRLCKKKVFLVLDDVDQLEQIQLLAGKHDWLGFGSRILITTRDAHVLASNGI 120

Query: 178 TNIYKVRGLDYVEALQLFHLKVSKGKQPTDDRVELSK 214
            ++YKV+GL+Y EAL LFH+K  K  QPT++ +ELS+
Sbjct: 121 NSLYKVQGLNYYEALSLFHVKAFKHIQPTNNHLELSR 157

Source: Dimocarpus longan

Species: Dimocarpus longan

Genus: Dimocarpus

Family: Sapindaceae

Order: Sapindales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|332330340|gb|AEE43926.1| TIR-NBS-LRR resistance protein muRdr1B [Rosa multiflora]

 Score =  209 bits (532), Expect = 6e-52,   Method: Compositional matrix adjust.
 Identities = 106/215 (49%), Positives = 148/215 (68%), Gaps = 2/215 (0%)

Query: 2   ESELIKDIVKEISKRLNPTFP--SAVDGLVGIASRMEKMNGYLEAGLDDVRFIGICGMGG 59
           E ELI++IV+ +  +++P+     + + LVG+ +++E+++  L+    DVRFIGI GMGG
Sbjct: 168 EKELIREIVQALWSKVHPSLTVFGSSEKLVGMHTKLEEIDVLLDIEASDVRFIGIWGMGG 227

Query: 60  IGKTTLAKVLYNTLKDQFEASSFLANVREVSVTRGLVPLQEQLLSEVLMERNLIIWDVHK 119
           +GKTTLA+++Y  +  QFE   FL NVREVS T GLV LQ+Q+LS +L E N  +W+V+ 
Sbjct: 228 LGKTTLARLVYEKISHQFEVCVFLTNVREVSATHGLVYLQKQILSHILKEENAQVWNVYS 287

Query: 120 GINLIRWRLCRKRVLVVLDDVDQLEQLQALAGNHDWFGFGSRIIITTRDEHVLKGHGVTN 179
           GI +I+   C K VL+VLDDVDQ EQL+ LAG  DWFG  SRII TTR++ VL  HGV  
Sbjct: 288 GITMIKRCFCNKAVLLVLDDVDQSEQLEHLAGEKDWFGLRSRIIFTTRNQRVLVTHGVEK 347

Query: 180 IYKVRGLDYVEALQLFHLKVSKGKQPTDDRVELSK 214
            Y+++GL+  EALQLF  K  +  +P +D  EL K
Sbjct: 348 PYELKGLNNAEALQLFSWKAFRKCEPEEDYAELCK 382

Source: Rosa multiflora

Species: Rosa multiflora

Genus: Rosa

Family: Rosaceae

Order: Rosales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|399920215|gb|AFP55562.1| TIR-NBS-LRR [Rosa rugosa]

 Score =  208 bits (529), Expect = 1e-51,   Method: Compositional matrix adjust.
 Identities = 106/215 (49%), Positives = 150/215 (69%), Gaps = 2/215 (0%)

Query: 2   ESELIKDIVKEISKRLNPTFP--SAVDGLVGIASRMEKMNGYLEAGLDDVRFIGICGMGG 59
           E+ELI++IV+ +  +++P+     + + LVG+ +++E +   L    +DVRFIGI GMGG
Sbjct: 117 ETELIREIVQALWSKVHPSLTVFGSSEKLVGMDTKLEDIYDLLVEEANDVRFIGIWGMGG 176

Query: 60  IGKTTLAKVLYNTLKDQFEASSFLANVREVSVTRGLVPLQEQLLSEVLMERNLIIWDVHK 119
           +GKTTLA+V+Y  +  +F+   FLAN+REVS T GLV LQ+Q+LS++L E N+ +WDV+ 
Sbjct: 177 LGKTTLARVVYEEISHRFDVCVFLANIREVSATHGLVYLQKQILSQILKEENVKVWDVYS 236

Query: 120 GINLIRWRLCRKRVLVVLDDVDQLEQLQALAGNHDWFGFGSRIIITTRDEHVLKGHGVTN 179
           GI + +  LC K VL+VLDDVDQ EQL+ L G  DWFG  SRIIITTR++ VL  HGV  
Sbjct: 237 GITMTKRCLCNKAVLLVLDDVDQSEQLEHLVGEKDWFGLRSRIIITTRNQRVLVTHGVEK 296

Query: 180 IYKVRGLDYVEALQLFHLKVSKGKQPTDDRVELSK 214
            Y+++GL+  EALQLF  K  +  +P +D  EL K
Sbjct: 297 PYELKGLNKDEALQLFSWKAFRKCEPEEDYAELCK 331

Source: Rosa rugosa

Species: Rosa rugosa

Genus: Rosa

Family: Rosaceae

Order: Rosales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|332330347|gb|AEE43933.1| TIR-NBS-LRR resistance protein muRdr1I [Rosa multiflora]

 Score =  207 bits (526), Expect = 3e-51,   Method: Compositional matrix adjust.
 Identities = 106/215 (49%), Positives = 148/215 (68%), Gaps = 2/215 (0%)

Query: 2   ESELIKDIVKEISKRLNP--TFPSAVDGLVGIASRMEKMNGYLEAGLDDVRFIGICGMGG 59
           E+ELI++IV+ +  +++P  T   + + LVG+ +++E ++  L+    DVRFIGI GMGG
Sbjct: 168 ETELIREIVQVLWSKVHPCLTVFGSSEKLVGMDTKLEDIDVLLDKETKDVRFIGIWGMGG 227

Query: 60  IGKTTLAKVLYNTLKDQFEASSFLANVREVSVTRGLVPLQEQLLSEVLMERNLIIWDVHK 119
           +GKTTLA+++Y  +   FE   FLANVREVS T GLV LQ+Q+LS++  E N+ +WDV+ 
Sbjct: 228 LGKTTLARLVYEKISHLFEVCVFLANVREVSATHGLVYLQKQILSQIWKEENIQVWDVYS 287

Query: 120 GINLIRWRLCRKRVLVVLDDVDQLEQLQALAGNHDWFGFGSRIIITTRDEHVLKGHGVTN 179
           GI + +   C K VL+VLDD DQ EQL+ L G  DWFG  SRIIITTR+ HVL  HG+  
Sbjct: 288 GITMTKRCFCNKAVLLVLDDADQSEQLENLVGEKDWFGLRSRIIITTRNRHVLVTHGIEK 347

Query: 180 IYKVRGLDYVEALQLFHLKVSKGKQPTDDRVELSK 214
            Y+++GL+  EALQLF  K  +  +P +D VE SK
Sbjct: 348 PYELKGLNEDEALQLFSWKAFRNYEPEEDYVEQSK 382

Source: Rosa multiflora

Species: Rosa multiflora

Genus: Rosa

Family: Rosaceae

Order: Rosales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|55669339|gb|AAV54597.1| NBS-LRR resistance protein-like [Musa acuminata]

 Score =  207 bits (526), Expect = 3e-51,   Method: Compositional matrix adjust.
 Identities = 103/156 (66%), Positives = 124/156 (79%)

Query: 58  GGIGKTTLAKVLYNTLKDQFEASSFLANVREVSVTRGLVPLQEQLLSEVLMERNLIIWDV 117
           GG+GKTTLA+ ++N +  QF+ S FL+NVREVS+TRGL  LQ+QL+ ++LMERN+IIWDV
Sbjct: 1   GGVGKTTLARFVFNKISYQFDGSCFLSNVREVSMTRGLNVLQQQLIYDILMERNIIIWDV 60

Query: 118 HKGINLIRWRLCRKRVLVVLDDVDQLEQLQALAGNHDWFGFGSRIIITTRDEHVLKGHGV 177
           H+G N IR RL  KRVLVVLDDVDQLEQLQALAG HDWFG GSRIIITTR+ H L GH V
Sbjct: 61  HRGCNEIRRRLRHKRVLVVLDDVDQLEQLQALAGMHDWFGQGSRIIITTRNRHTLVGHCV 120

Query: 178 TNIYKVRGLDYVEALQLFHLKVSKGKQPTDDRVELS 213
            N++ V GL++ EALQLF  K  +   PTDD +ELS
Sbjct: 121 DNVHMVHGLNHEEALQLFCWKAFRKDHPTDDYLELS 156

Source: Musa acuminata

Species: Musa acuminata

Genus: Musa

Family: Musaceae

Order: Zingiberales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255547496|ref|XP_002514805.1| ATP binding protein, putative [Ricinus communis] gi|223545856|gb|EEF47359.1| ATP binding protein, putative [Ricinus communis]

 Score =  206 bits (523), Expect = 7e-51,   Method: Compositional matrix adjust.
 Identities = 124/215 (57%), Positives = 157/215 (73%), Gaps = 3/215 (1%)

Query: 2   ESELIKDIVKEISKRLNPTF--PSAVDGLVGIASRMEKMNGYLEAG-LDDVRFIGICGMG 58
           ESELI++IVKE+  +L  T    SA    VG+ SR+ +M+  L+ G LDDV+FIGICGMG
Sbjct: 161 ESELIQEIVKEVLSKLRKTSLESSAAKNFVGMNSRLVEMSMCLDMGQLDDVQFIGICGMG 220

Query: 59  GIGKTTLAKVLYNTLKDQFEASSFLANVREVSVTRGLVPLQEQLLSEVLMERNLIIWDVH 118
           GIGKTT+A+ ++  L  QFE SSFLANVREV   RGLV LQ+QLLSE+L++RN+ I +  
Sbjct: 221 GIGKTTIARFVHEELSSQFEGSSFLANVREVEEKRGLVHLQKQLLSEILLDRNITICNAF 280

Query: 119 KGINLIRWRLCRKRVLVVLDDVDQLEQLQALAGNHDWFGFGSRIIITTRDEHVLKGHGVT 178
            G+  I  RL  KRVL++LDDV+QL+QL+ LAG HDWFG GSRII+T+RDEH+LK HGV 
Sbjct: 281 GGMTEISNRLAHKRVLIILDDVNQLDQLKMLAGMHDWFGKGSRIIVTSRDEHLLKCHGVD 340

Query: 179 NIYKVRGLDYVEALQLFHLKVSKGKQPTDDRVELS 213
            IY+V GL   EAL LF LK  +   P +D +ELS
Sbjct: 341 KIYRVEGLGRDEALHLFCLKAFRNDHPIEDFLELS 375

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|360039826|gb|AEV91327.1| NBS-LRR disease resistance protein [Dimocarpus longan]

 Score =  205 bits (521), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 106/160 (66%), Positives = 125/160 (78%), Gaps = 1/160 (0%)

Query: 58  GGIGKTTLAKVLYNTLKDQFEASSFLANVREVSVTRGLVPLQEQLLSEVLMERNLIIWDV 117
           GG+GKTT+AKVLYN L DQ+E   FLANVREV   +G+V LQE LLS+VL E NL I D 
Sbjct: 2   GGVGKTTVAKVLYNWLSDQYEGGCFLANVREVFEKQGVVHLQEMLLSKVLKETNLKICDD 61

Query: 118 HKGINLIRWRLCRKRVLVVLDDVD-QLEQLQALAGNHDWFGFGSRIIITTRDEHVLKGHG 176
            +GINLI+ RLC KRVL++ DDVD QLEQL+ LAGN DWFG GSRIIITTRDEHVL  HG
Sbjct: 62  QEGINLIKRRLCLKRVLIIFDDVDDQLEQLEKLAGNIDWFGSGSRIIITTRDEHVLTSHG 121

Query: 177 VTNIYKVRGLDYVEALQLFHLKVSKGKQPTDDRVELSKCV 216
           + NIYKV+GL+  EAL+LFH K  K +QP +D +ELS+ V
Sbjct: 122 INNIYKVKGLENDEALKLFHSKAFKSEQPANDYIELSRHV 161

Source: Dimocarpus longan

Species: Dimocarpus longan

Genus: Dimocarpus

Family: Sapindaceae

Order: Sapindales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	216
TAIR|locus:2175991	1294	AT5G17680 [Arabidopsis thalian	0.898	0.149	0.412	8.3e-33
TAIR|locus:2156579	1190	AT5G48770 [Arabidopsis thalian	0.972	0.176	0.374	2.6e-27
TAIR|locus:2098110	1219	AT3G44670 [Arabidopsis thalian	0.962	0.170	0.360	3.5e-27
TAIR|locus:2129670	1008	AT4G14370 [Arabidopsis thalian	0.972	0.208	0.364	4.2e-27
TAIR|locus:2177401	833	AT5G38350 [Arabidopsis thalian	0.949	0.246	0.353	4.8e-27
TAIR|locus:2167457	1191	AT5G36930 [Arabidopsis thalian	0.967	0.175	0.4	2.4e-26
TAIR|locus:2094498	1981	AT3G25510 [Arabidopsis thalian	0.962	0.104	0.357	3e-26
TAIR|locus:2174920	1017	AT5G40100 [Arabidopsis thalian	0.967	0.205	0.368	5e-26
TAIR|locus:2076043	1194	RPP1 "recognition of peronospo	0.962	0.174	0.356	5e-26
TAIR|locus:2098145	1240	AT3G44630 [Arabidopsis thalian	0.962	0.167	0.356	8.7e-26

TAIR|locus:2175991 AT5G17680 [Arabidopsis thaliana (taxid:3702)]

 Score = 352 (129.0 bits), Expect = 8.3e-33, Sum P(2) = 8.3e-33
 Identities = 80/194 (41%), Positives = 107/194 (55%)

Query:     2 ESELIKDIVKEISKRLNPTFPSAVDGLVGIASRMEKMNGYLEAGLDDVRFIGICGMGGIG 61
             +S+LIK IVK+IS +L  T      GL+G++S M+ +   +     DVR +GI GMGG+G
Sbjct:   159 DSKLIKKIVKDISDKLVSTSWDDSKGLIGMSSHMDFLQSMISIVDKDVRMLGIWGMGGVG 218

Query:    62 KTTLAKVLYNTLKDQFEASSFLANVREVSVTRGLVPLQEQLLSEVLMERNLIIWDVHKGI 121
             KTT+AK LYN L  QF+   F+ NV+EV    G+  LQ + L  +  ER+   W      
Sbjct:   219 KTTIAKYLYNQLSGQFQVHCFMENVKEVCNRYGVRRLQVEFLCRMFQERDKEAWSSVSCC 278

Query:   122 NLIRWRLCRKRXXXXXXXXXXXXXXXALAGNHDWFGFGSRIIITTRDEHVLKGHGVTNIY 181
             N+I+ R   K                 L     WFG GSRII+TTRD H+L  HG+  +Y
Sbjct:   279 NIIKERFRHKMVFIVLDDVDRSEQLNELVKETGWFGPGSRIIVTTRDRHLLLSHGINLVY 338

Query:   182 KVRGLDYVEALQLF 195
             KV+ L   EALQLF
Sbjct:   339 KVKCLPKKEALQLF 352

GO:0005622 "intracellular" evidence=IEA

GO:0006952 "defense response" evidence=IEA;ISS

GO:0007165 "signal transduction" evidence=IEA

GO:0043531 "ADP binding" evidence=IEA

TAIR|locus:2156579 AT5G48770 [Arabidopsis thaliana (taxid:3702)]

 Score = 319 (117.4 bits), Expect = 2.6e-27, P = 2.6e-27
 Identities = 79/211 (37%), Positives = 115/211 (54%)

Query:     2 ESELIKDIVKEISKRLNPTFPSAVDGLVGIASRMEKMNGYLEAGLD-DVRFIGICGMGGI 60
             E+ ++++IV+ IS RL     ++ + LVG+ + ME +   L+   D +V  +GI GMGGI
Sbjct:   160 EAMMLEEIVEVISSRLASMQATSFEDLVGMEAHMENIRPLLKKDFDAEVCMVGIWGMGGI 219

Query:    61 GKTTLAKVLYNTLKDQFEASSFLANVREVSVTRGLVPLQEQLLSEVLMERNLIIWDVHKG 120
             GKTT+AK LY  L  QF A SF+ +V ++     L  +Q+QLL ++L  + + +  +  G
Sbjct:   220 GKTTIAKYLYEQLASQFPAHSFIEDVGQICKKVDLKCIQQQLLCDILSTKRVALMSIQNG 279

Query:   121 INLIRWRLCRKRXXXXXXXXXXXXXXXALAGNHDWFGFGSRIIITTRDEHVLKGHGVTNI 180
              NLIR RL   +               ALA    WFG GSRIIITTRD  +L    VTN 
Sbjct:   280 ANLIRSRLGTLKVLFVLDGVDKVEQLHALAKEASWFGPGSRIIITTRDRRLLDSCRVTNK 339

Query:   181 YKVRGLDYVEALQLFHLKVSKGKQPTDDRVE 211
             Y+V+ L   ++L++       G  PT D  E
Sbjct:   340 YEVKCLQNEDSLKIVKNIAFAGGVPTLDGYE 370

GO:0005622 "intracellular" evidence=IEA

GO:0006952 "defense response" evidence=IEA;ISS

GO:0007165 "signal transduction" evidence=IEA

GO:0043531 "ADP binding" evidence=IEA

GO:0005829 "cytosol" evidence=IDA

TAIR|locus:2098110 AT3G44670 [Arabidopsis thaliana (taxid:3702)]

 Score = 318 (117.0 bits), Expect = 3.5e-27, P = 3.5e-27
 Identities = 79/219 (36%), Positives = 121/219 (55%)

Query:     2 ESELIKDIVKEISKRLNPTFPSA-VDGLVGIASRMEKMNGYLEAGLDDVRFIGICGMGGI 60
             E+++I+ I  ++S  LN   PS   DGLVG+ + M+ +   L   LD+VR IGI G  GI
Sbjct:   241 EADMIEKIATDVSNMLNSFTPSRDFDGLVGMRAHMDMLEQLLRLDLDEVRMIGIWGPPGI 300

Query:    61 GKTTLAKVLYNTLKDQFEASSFLANVREV------SVTRGLVPLQEQLLSEVLMERNLII 114
             GKTT+A+ L+N + D+F+ S+ + N+R +            + LQ Q+LS+++  ++++I
Sbjct:   301 GKTTIARFLFNQVSDRFQLSAIIVNIRGIYPRPCFDEYSAQLQLQNQMLSQMINHKDIMI 360

Query:   115 WDVHKGINLIRWRLCRKRXXXXXXXXXXXXXXXALAGNHDWFGFGSRIIITTRDEHVLKG 174
                H G+   + RL  K+               ALA    WFG GSRIIITT D  VLK 
Sbjct:   361 --SHLGV--AQERLRDKKVFLVLDEVDQLGQLDALAKETRWFGPGSRIIITTEDLGVLKA 416

Query:   175 HGVTNIYKVRGLDYVEALQLFHLKVSKGKQPTDDRVELS 213
             HG+ ++YKV+     EA Q+F +     KQP +   E++
Sbjct:   417 HGINHVYKVKYPSNDEAFQIFCMNAFGQKQPHEGFDEIA 455

GO:0000166 "nucleotide binding" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM

GO:0006952 "defense response" evidence=IEA;ISS;TAS

GO:0007165 "signal transduction" evidence=IEA

GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA

GO:0043531 "ADP binding" evidence=IEA

GO:0042742 "defense response to bacterium" evidence=ISS

TAIR|locus:2129670 AT4G14370 [Arabidopsis thaliana (taxid:3702)]

 Score = 316 (116.3 bits), Expect = 4.2e-27, P = 4.2e-27
 Identities = 81/222 (36%), Positives = 120/222 (54%)

Query:     2 ESELIKDIVKEISKRLNPTFPSAVDGLVGIASRMEKMNGYLEAGLDD-VRFIGICGMGGI 60
             ES++I+ I ++IS +LN T     D +VG+ + +E+M   L+    D    +GICG  GI
Sbjct:   118 ESKMIEKISRDISNKLNSTISRDFDDMVGLEAHLEEMKYLLDLDYKDGAMIVGICGPAGI 177

Query:    61 GKTTLAKVLYNTLKDQFEASSFLANVREVSVTRGL------VPLQEQLLSEVLMERNLII 114
             GKTT+A+ LY+ L   F+ S F+ N+   S  RGL      + LQEQLLS++L +  + I
Sbjct:   178 GKTTIARALYSLLLSSFQLSCFVENLSG-SDNRGLDEYGFKLRLQEQLLSKILNQNGMRI 236

Query:   115 WDVHKGINLIRWRLCRKRXXXXXXXXXXXXXXXALAGNHDWFGFGSRIIITTRDEHVLKG 174
             +  H G   I+ RLC ++               ALA    WFG GSRII+TT D+ +L+ 
Sbjct:   237 Y--HLGA--IQERLCDQKVLIVLDDVNDLKQLEALANETSWFGPGSRIIVTTEDKGLLEQ 292

Query:   175 HGVTNIYKVRGLDYVEALQLFHLKVSKGKQPTDDRVELSKCV 216
             HG+   Y V      EAL++F +   +   P D   +L+K V
Sbjct:   293 HGINKTYHVGFPSIEEALEIFCIYAFRKSSPPDGFKKLTKRV 334

GO:0000166 "nucleotide binding" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0006952 "defense response" evidence=IEA;ISS

GO:0007165 "signal transduction" evidence=IEA;ISS

GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA

GO:0043531 "ADP binding" evidence=IEA

GO:0035091 "phosphatidylinositol binding" evidence=ISS

TAIR|locus:2177401 AT5G38350 [Arabidopsis thaliana (taxid:3702)]

 Score = 314 (115.6 bits), Expect = 4.8e-27, P = 4.8e-27
 Identities = 77/218 (35%), Positives = 119/218 (54%)

Query:     5 LIKDIVKEISKRLNPTFPSA-VDGLVGIASRMEKMNGYLEAGLDDVRFIGICGMGGIGKT 63
             + + I  ++S  LN   PS   DGL+G+ + M++M   L    D+VR IGI G  GIGKT
Sbjct:     1 MTEKIATDVSNMLNNYSPSRDFDGLIGMDAHMKEMESLLCLDSDEVRMIGIWGPSGIGKT 60

Query:    64 TLAKVLYNTLKDQFEASSFLANVREVSVTRGL--------VPLQEQLLSEVLMERNLIIW 115
             T+A+VLY+   + FE S F+ N++E+  TR +        + LQ+Q LS+++  +++   
Sbjct:    61 TIARVLYSQFSENFELSIFMGNIKELMYTRPVCSDEYSAKIQLQKQFLSQIINHKDM--- 117

Query:   116 DVHKGINLIRWRLCRKRXXXXXXXXXXXXXXXALAGNHDWFGFGSRIIITTRDEHVLKGH 175
             ++H  + + + RL  K+               A+A    WFG GSRIIITT+D+ +LK H
Sbjct:   118 ELHH-LGVAQDRLNDKKVLIVLDSIDQSIQLDAIAKETRWFGHGSRIIITTQDQKLLKAH 176

Query:   176 GVTNIYKVRGLDYVEALQLFHLKVSKGKQPTDDRVELS 213
             G+ +IYKV      EA Q+F +       P D   EL+
Sbjct:   177 GINHIYKVEFPSAYEAYQMFCMYAFGQNFPNDGFEELA 214

GO:0005634 "nucleus" evidence=ISM

GO:0006952 "defense response" evidence=IEA;ISS

GO:0043531 "ADP binding" evidence=IEA

TAIR|locus:2167457 AT5G36930 [Arabidopsis thaliana (taxid:3702)]

 Score = 310 (114.2 bits), Expect = 2.4e-26, P = 2.4e-26
 Identities = 86/215 (40%), Positives = 115/215 (53%)

Query:     2 ESELIKDIVKEISKRLNPTFPSAVDGLVGIASRMEKMNGYLEAGLDDVRFIGICGMGGIG 61
             E+E I DI +EI KRL   +       VG+ SR++ ++  L  G D VR I I GMGGIG
Sbjct:   165 EAECIADITREILKRLPCQYLHVPSYAVGLRSRLQHISSLLSIGSDGVRVIVIYGMGGIG 224

Query:    62 KTTLAKVLYNTLKDQFEASSFLANVREVSVT-RGLVPLQEQLLSEVLMERNLIIWDVHKG 120
             KTTLAKV +N     FE SSFL N RE S    G   LQ QLLS++L  RN I +   KG
Sbjct:   225 KTTLAKVAFNEFSHLFEGSSFLENFREYSKKPEGRTHLQHQLLSDIL-RRNDIEF---KG 280

Query:   121 IN-LIRWRLCRKRXXXXXXXXXXXXXXXALAGNHDWFGFGSRIIITTRDEHVLKGHGVTN 179
             ++  ++ R   KR               + A + D FG GSRIIITTR+ H+LK      
Sbjct:   281 LDHAVKERFRSKRVLLVVDDVDDVHQLNSAAIDRDCFGHGSRIIITTRNMHLLKQLRAEG 340

Query:   180 IYKVRGLDYVEALQLFHLKVSKGKQPTDDRVELSK 214
              Y  + LD  E+L+LF     +  +P  + ++ S+
Sbjct:   341 SYSPKELDGDESLELFSWHAFRTSEPPKEFLQHSE 375

GO:0005622 "intracellular" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM

GO:0006952 "defense response" evidence=IEA;ISS

GO:0007165 "signal transduction" evidence=IEA

GO:0043531 "ADP binding" evidence=IEA

TAIR|locus:2094498 AT3G25510 [Arabidopsis thaliana (taxid:3702)]

 Score = 312 (114.9 bits), Expect = 3.0e-26, P = 3.0e-26
 Identities = 79/221 (35%), Positives = 121/221 (54%)

Query:     2 ESELIKDIVKEISKRLNPTFPSA-VDGLVGIASRMEKMNGYLEAGLDDVRFIGICGMGGI 60
             E+ +I+ I  +IS +LN + PS   D LVG+ + ME+M   L    D+VR IGI G  GI
Sbjct:  1397 EAVMIEKIATDISNKLNKSTPSRDFDELVGMGAHMERMELLLCLDSDEVRMIGIWGPSGI 1456

Query:    61 GKTTLAKVLYNTLKDQFEASSFLANVREVSVTRGL--------VPLQEQLLSEVLMERNL 112
             GKTT+A+ L++   D FE S+F+ N++E+   + +        + LQ Q +S+++   ++
Sbjct:  1457 GKTTIARFLFSQFSDSFELSAFMENIKELMYRKPVCSDDYSAKLHLQNQFMSQIINHMDV 1516

Query:   113 IIWDVHKGINLIRWRLCRKRXXXXXXXXXXXXXXXALAGNHDWFGFGSRIIITTRDEHVL 172
              +   H G+  +  RL  K+               A+A    WFG GSRIIITT+D+ +L
Sbjct:  1517 EV--PHLGV--VENRLNDKKVLIVLDNIDQSMQLDAIAKETRWFGHGSRIIITTQDQKLL 1572

Query:   173 KGHGVTNIYKVRGLDYVEALQLFHLKVSKGKQPTDDRVELS 213
             K HG+ +IYKV      EA Q+F +     K P D+  EL+
Sbjct:  1573 KAHGINHIYKVDYPSTHEACQIFCMSAVGKKFPKDEFQELA 1613

GO:0000166 "nucleotide binding" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0006952 "defense response" evidence=IEA;ISS

GO:0007165 "signal transduction" evidence=IEA

GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA

GO:0043531 "ADP binding" evidence=IEA

TAIR|locus:2174920 AT5G40100 [Arabidopsis thaliana (taxid:3702)]

 Score = 306 (112.8 bits), Expect = 5.0e-26, P = 5.0e-26
 Identities = 80/217 (36%), Positives = 118/217 (54%)

Query:     2 ESELIKDIVKEISKRLNPTFPSAVD--GLVGIASRMEKMNGYLE--AGLDDVRFIGICGM 57
             E+ +++ IV++ISKR   T    +D    VG+ + ++ +   L+  +  D+VR IGI GM
Sbjct:   159 EATMVRKIVEDISKR--KTLKHKIDFRNFVGVDTHLQGLKSLLDMDSNNDEVRMIGIWGM 216

Query:    58 GGIGKTTLAKVLYNTLKDQFEASSFLANVREVSVTRGLVPLQEQLLSEVLMERNLIIWDV 117
             GGIGKTT+AK LY+ L  QF AS F  +++ +     L+ LQ +LL   L + +++ W V
Sbjct:   217 GGIGKTTIAKCLYDQLSSQFTASYFTQDIKGIHKELDLLHLQNRLLYNTLGD-DIMPWSV 275

Query:   118 HKGINLIRWRLCRKRXXXXXXXXXXXXXXXALAGNHDWFGFGSRIIITTRDEHVLKGHGV 177
               G  +I  RL   +               ALA    WFG  SRIIITTRD+ +L   GV
Sbjct:   276 EAGREVIAARLGNHKVLLVLDGVDKLVQIHALAKETRWFGRQSRIIITTRDKGLLNSCGV 335

Query:   178 TNIYKVRGLDYVEALQLF-HLKVSKGKQPTDDRVELS 213
               IY V+ LD  ++LQ+F  +    G  P+ D  +LS
Sbjct:   336 KTIYDVKCLDDKDSLQMFKQIAFEGGSPPSVDFEQLS 372

GO:0005622 "intracellular" evidence=IEA

GO:0006952 "defense response" evidence=IEA;ISS

GO:0007165 "signal transduction" evidence=IEA

GO:0043531 "ADP binding" evidence=IEA

GO:0009941 "chloroplast envelope" evidence=IDA

GO:0005886 "plasma membrane" evidence=IDA

TAIR|locus:2076043 RPP1 "recognition of peronospora parasitica 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 307 (113.1 bits), Expect = 5.0e-26, P = 5.0e-26
 Identities = 78/219 (35%), Positives = 119/219 (54%)

Query:     2 ESELIKDIVKEISKRLNPTFPSA-VDGLVGIASRMEKMNGYLEAGLDDVRFIGICGMGGI 60
             E+++I+ I  ++S  LN   PS   DGLVG+ + M+ +   L   LD+VR IGI G  GI
Sbjct:   245 EADMIEKISTDVSNMLNSFTPSRDFDGLVGMRAHMDMLEQLLRLDLDEVRMIGIWGPPGI 304

Query:    61 GKTTLAKVLYNTLKDQFEASSFLANVREV------SVTRGLVPLQEQLLSEVLMERNLII 114
             GKTT+A+ L+N + D+F+ S+ + N++              + LQ Q+LS+++  ++++I
Sbjct:   305 GKTTIARFLFNQVSDRFQLSAIMVNIKGCYPRPCFDEYSAQLQLQNQMLSQMINHKDIMI 364

Query:   115 WDVHKGINLIRWRLCRKRXXXXXXXXXXXXXXXALAGNHDWFGFGSRIIITTRDEHVLKG 174
                H G+   + RL  K+               ALA    WFG GSRIIITT D  VLK 
Sbjct:   365 --SHLGV--AQERLRDKKVFLVLDEVDQLGQLDALAKETRWFGPGSRIIITTEDLGVLKA 420

Query:   175 HGVTNIYKVRGLDYVEALQLFHLKVSKGKQPTDDRVELS 213
             HG+ ++YKV      EA Q+F +     KQP +   E++
Sbjct:   421 HGINHVYKVEYPSNDEAFQIFCMNAFGQKQPHEGFDEIA 459

GO:0005737 "cytoplasm" evidence=ISM

GO:0006952 "defense response" evidence=IEA;ISS;TAS

GO:0007165 "signal transduction" evidence=IEA

GO:0043531 "ADP binding" evidence=IEA

GO:0002239 "response to oomycetes" evidence=IDA

GO:0000139 "Golgi membrane" evidence=IDA

GO:0005789 "endoplasmic reticulum membrane" evidence=IDA

GO:0005886 "plasma membrane" evidence=IDA

GO:0009817 "defense response to fungus, incompatible interaction" evidence=IMP;TAS

GO:0030275 "LRR domain binding" evidence=ISS

TAIR|locus:2098145 AT3G44630 [Arabidopsis thaliana (taxid:3702)]

 Score = 305 (112.4 bits), Expect = 8.7e-26, P = 8.7e-26
 Identities = 78/219 (35%), Positives = 118/219 (53%)

Query:     2 ESELIKDIVKEISKRLNPTFPSA-VDGLVGIASRMEKMNGYLEAGLDDVRFIGICGMGGI 60
             E+++I+ I  ++S  LN   PS   DGLVG+ + M+ +   L   LD+VR IGI G  GI
Sbjct:   241 EADMIEKIATDVSNMLNSFTPSRDFDGLVGMRAHMDMLEQLLRLDLDEVRIIGIWGPPGI 300

Query:    61 GKTTLAKVLYNTLKDQFEASSFLANVREV------SVTRGLVPLQEQLLSEVLMERNLII 114
             GKTT+A+ L N + D+F+ S+ + N++              + LQ Q+LS+++  ++++I
Sbjct:   301 GKTTIARFLLNQVSDRFQLSAIMVNIKGCYPRPCFDEYSAQLQLQNQMLSQMINHKDIMI 360

Query:   115 WDVHKGINLIRWRLCRKRXXXXXXXXXXXXXXXALAGNHDWFGFGSRIIITTRDEHVLKG 174
                H G+   + RL  K+               ALA    WFG GSRIIITT D  VLK 
Sbjct:   361 --SHLGV--AQERLRDKKVFLVLDEVDQLGQLDALAKETRWFGPGSRIIITTEDLGVLKA 416

Query:   175 HGVTNIYKVRGLDYVEALQLFHLKVSKGKQPTDDRVELS 213
             HG+ ++YKV      EA Q+F +     KQP +   E++
Sbjct:   417 HGINHVYKVEYPSNDEAFQIFCMNAFGQKQPHEGFDEIA 455

GO:0000166 "nucleotide binding" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM

GO:0006952 "defense response" evidence=IEA;ISS;TAS

GO:0007165 "signal transduction" evidence=IEA

GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA

GO:0043531 "ADP binding" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	3.6.1	LOW CONFIDENCE prediction!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	216
PLN03210	1153	PLN03210, PLN03210, Resistant to P	2e-37
pfam00931	285	pfam00931, NB-ARC, NB-ARC domain	8e-20
PRK05541	176	PRK05541, PRK05541, adenylylsulfate kinase; Provis	0.003

>gnl|CDD|215633 PLN03210, PLN03210, Resistant to P

 Score =  137 bits (347), Expect = 2e-37
 Identities = 78/226 (34%), Positives = 127/226 (56%), Gaps = 15/226 (6%)

Query: 2   ESELIKDIVKEISKRLNPTFPSAVDGLVGIASRMEKMNGYLEAGLDDVRFIGICGMGGIG 61
           E+++I++I  ++  +LN T  +  +  VGI   + KM+  L    ++VR +GI G  GIG
Sbjct: 160 EAKMIEEIANDVLGKLNLTPSNDFEDFVGIEDHIAKMSSLLHLESEEVRMVGIWGSSGIG 219

Query: 62  KTTLAKVLYNTLKDQFEASSFLANV---REVSVTRGLVP--------LQEQLLSEVLMER 110
           KTT+A+ L++ L  QF++S F+      + + +     P        LQ   LSE+L ++
Sbjct: 220 KTTIARALFSRLSRQFQSSVFIDRAFISKSMEIYSSANPDDYNMKLHLQRAFLSEILDKK 279

Query: 111 NLIIWDVHKGINLIRWRLCRKRVLVVLDDVDQLEQLQALAGNHDWFGFGSRIIITTRDEH 170
           ++ I+  H G   +  RL  ++VL+ +DD+D  + L ALAG   WFG GSRII+ T+D+H
Sbjct: 280 DIKIY--HLGA--MEERLKHRKVLIFIDDLDDQDVLDALAGQTQWFGSGSRIIVITKDKH 335

Query: 171 VLKGHGVTNIYKVRGLDYVEALQLFHLKVSKGKQPTDDRVELSKCV 216
            L+ HG+ +IY+V       AL++F     K   P D  +EL+  V
Sbjct: 336 FLRAHGIDHIYEVCLPSNELALEMFCRSAFKKNSPPDGFMELASEV 381

syringae 6; Provisional. Length = 1153

>gnl|CDD|216202 pfam00931, NB-ARC, NB-ARC domain

 Score = 84.7 bits (210), Expect = 8e-20
 Identities = 55/184 (29%), Positives = 95/184 (51%), Gaps = 14/184 (7%)

Query: 35  MEKMNGYLEAGLDDVRFIGICGMGGIGKTTLAKVLYN--TLKDQFEASSFLANVREVSVT 92
           +E +   L    D++  +GI GMGG+GKTTLAK +YN  ++   F++ +++   +  +  
Sbjct: 5   IEALIEKLLEMSDNLGVVGIVGMGGVGKTTLAKQIYNDDSVGGHFDSVAWVVVSKTYTEF 64

Query: 93  RGLVPLQEQLLSEVLMERNLIIWDVHKGINLIRWRLC----RKRVLVVLDDVDQLEQLQA 148
           R    LQ+ +L E+ ++ +     V K  + +  ++     RKR L+VLDDV +      
Sbjct: 65  R----LQKDILQELGLDDSDW---VEKNESELAVKIKEALLRKRFLLVLDDVWEKNDWDK 117

Query: 149 LAGNHDWFGFGSRIIITTRDEHVLKGHGVTN-IYKVRGLDYVEALQLFHLKVSKGKQPTD 207
           +         GSR+I+TTR E V    G T+  ++V  L+  E+ +LF  KV + + P  
Sbjct: 118 IGVPFPDGENGSRVIVTTRSESVAGRMGGTSKPHEVESLEPEESWELFSNKVFEKELPPC 177

Query: 208 DRVE 211
             +E
Sbjct: 178 PELE 181

Length = 285

>gnl|CDD|235498 PRK05541, PRK05541, adenylylsulfate kinase; Provisional

 Score = 36.6 bits (85), Expect = 0.003
 Identities = 15/32 (46%), Positives = 20/32 (62%)

Query: 52 IGICGMGGIGKTTLAKVLYNTLKDQFEASSFL 83
          I I G+ G GKTT+AK LY  LK ++    +L
Sbjct: 10 IWITGLAGSGKTTIAKALYERLKLKYSNVIYL 41

Length = 176

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	216
PLN03210	1153	Resistant to P. syringae 6; Provisional	99.95
PF00931	287	NB-ARC: NB-ARC domain; InterPro: IPR002182 This is	99.95
KOG4658	889	consensus Apoptotic ATPase [Signal transduction me	99.92
PRK00411	394	cdc6 cell division control protein 6; Reviewed	99.61
TIGR02928	365	orc1/cdc6 family replication initiation protein. M	99.57
PF05729	166	NACHT: NACHT domain	99.55
PF01637	234	Arch_ATPase: Archaeal ATPase; InterPro: IPR011579	99.53
PRK06893	229	DNA replication initiation factor; Validated	99.51
PRK08727	233	hypothetical protein; Validated	99.4
PRK05642	234	DNA replication initiation factor; Validated	99.37
PTZ00112	1164	origin recognition complex 1 protein; Provisional	99.36
PF00308	219	Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013	99.34
PRK08084	235	DNA replication initiation factor; Provisional	99.33
COG1474	366	CDC6 Cdc6-related protein, AAA superfamily ATPase	99.33
PRK12402	337	replication factor C small subunit 2; Reviewed	99.3
COG2256	436	MGS1 ATPase related to the helicase subunit of the	99.3
TIGR01242	364	26Sp45 26S proteasome subunit P45 family. Many pro	99.29
PRK07003	830	DNA polymerase III subunits gamma and tau; Validat	99.28
TIGR03015	269	pepcterm_ATPase putative secretion ATPase, PEP-CTE	99.28
PF13173	128	AAA_14: AAA domain	99.28
TIGR03420	226	DnaA_homol_Hda DnaA regulatory inactivator Hda. Me	99.25
PF13191	185	AAA_16: AAA ATPase domain; PDB: 2V1U_A.	99.23
PRK04195	482	replication factor C large subunit; Provisional	99.23
PLN03025	319	replication factor C subunit; Provisional	99.22
PRK14961	363	DNA polymerase III subunits gamma and tau; Provisi	99.22
PRK09087	226	hypothetical protein; Validated	99.21
TIGR00635	305	ruvB Holliday junction DNA helicase, RuvB subunit.	99.21
PRK14960	702	DNA polymerase III subunits gamma and tau; Provisi	99.21
PRK00080	328	ruvB Holliday junction DNA helicase RuvB; Reviewed	99.2
PRK14963	504	DNA polymerase III subunits gamma and tau; Provisi	99.2
PRK04841	903	transcriptional regulator MalT; Provisional	99.2
PRK14956	484	DNA polymerase III subunits gamma and tau; Provisi	99.19
PRK12323	700	DNA polymerase III subunits gamma and tau; Provisi	99.19
PRK14949	944	DNA polymerase III subunits gamma and tau; Provisi	99.19
PF13401	131	AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S	99.19
PRK14088	440	dnaA chromosomal replication initiation protein; P	99.18
cd00009	151	AAA The AAA+ (ATPases Associated with a wide varie	99.18
PRK13342	413	recombination factor protein RarA; Reviewed	99.18
PRK14087	450	dnaA chromosomal replication initiation protein; P	99.17
PRK03992	389	proteasome-activating nucleotidase; Provisional	99.17
PTZ00202	550	tuzin; Provisional	99.16
PRK14086	617	dnaA chromosomal replication initiation protein; P	99.16
PRK00440	319	rfc replication factor C small subunit; Reviewed	99.15
PRK00149	450	dnaA chromosomal replication initiation protein; R	99.14
PRK14962	472	DNA polymerase III subunits gamma and tau; Provisi	99.14
COG0593	408	DnaA ATPase involved in DNA replication initiation	99.14
PRK14951	618	DNA polymerase III subunits gamma and tau; Provisi	99.14
PRK08691	709	DNA polymerase III subunits gamma and tau; Validat	99.13
PRK14957	546	DNA polymerase III subunits gamma and tau; Provisi	99.13
KOG0989	346	consensus Replication factor C, subunit RFC4 [Repl	99.13
PRK08903	227	DnaA regulatory inactivator Hda; Validated	99.12
TIGR00362	405	DnaA chromosomal replication initiator protein Dna	99.11
COG2909	894	MalT ATP-dependent transcriptional regulator [Tran	99.11
TIGR02881	261	spore_V_K stage V sporulation protein K. Members o	99.11
PRK07994	647	DNA polymerase III subunits gamma and tau; Validat	99.11
TIGR02639	731	ClpA ATP-dependent Clp protease ATP-binding subuni	99.1
COG1121	254	ZnuC ABC-type Mn/Zn transport systems, ATPase comp	99.1
PRK12422	445	chromosomal replication initiation protein; Provis	99.1
PF05496	233	RuvB_N: Holliday junction DNA helicase ruvB N-term	99.09
TIGR02397	355	dnaX_nterm DNA polymerase III, subunit gamma and t	99.09
PRK14964	491	DNA polymerase III subunits gamma and tau; Provisi	99.09
PRK06645	507	DNA polymerase III subunits gamma and tau; Validat	99.08
PRK06620	214	hypothetical protein; Validated	99.08
PRK14958	509	DNA polymerase III subunits gamma and tau; Provisi	99.06
TIGR03345	852	VI_ClpV1 type VI secretion ATPase, ClpV1 family. M	99.05
PRK14969	527	DNA polymerase III subunits gamma and tau; Provisi	99.05
PTZ00454	398	26S protease regulatory subunit 6B-like protein; P	99.04
PRK13341	725	recombination factor protein RarA/unknown domain f	99.04
PRK14952	584	DNA polymerase III subunits gamma and tau; Provisi	99.03
KOG2028	554	consensus ATPase related to the helicase subunit o	99.02
PRK07764	824	DNA polymerase III subunits gamma and tau; Validat	99.01
PRK09112	351	DNA polymerase III subunit delta'; Validated	98.99
PRK07940	394	DNA polymerase III subunit delta'; Validated	98.99
COG1120	258	FepC ABC-type cobalamin/Fe3+-siderophores transpor	98.99
PRK10865	857	protein disaggregation chaperone; Provisional	98.99
TIGR00678	188	holB DNA polymerase III, delta' subunit. At positi	98.99
CHL00095	821	clpC Clp protease ATP binding subunit	98.98
PRK05896	605	DNA polymerase III subunits gamma and tau; Validat	98.97
PRK09111	598	DNA polymerase III subunits gamma and tau; Validat	98.97
PTZ00361	438	26 proteosome regulatory subunit 4-like protein; P	98.97
PRK05564	313	DNA polymerase III subunit delta'; Validated	98.96
PRK07471	365	DNA polymerase III subunit delta'; Validated	98.96
TIGR01241	495	FtsH_fam ATP-dependent metalloprotease FtsH. HflB(	98.96
TIGR03689	512	pup_AAA proteasome ATPase. In the Actinobacteria,	98.95
PRK14970	367	DNA polymerase III subunits gamma and tau; Provisi	98.95
COG0488	530	Uup ATPase components of ABC transporters with dup	98.95
PRK14959	624	DNA polymerase III subunits gamma and tau; Provisi	98.94
TIGR03346	852	chaperone_ClpB ATP-dependent chaperone ClpB. Membe	98.93
PHA02544	316	44 clamp loader, small subunit; Provisional	98.93
CHL00176	638	ftsH cell division protein; Validated	98.93
PRK14955	397	DNA polymerase III subunits gamma and tau; Provisi	98.92
COG3899	849	Predicted ATPase [General function prediction only	98.92
CHL00181	287	cbbX CbbX; Provisional	98.91
PRK05563	559	DNA polymerase III subunits gamma and tau; Validat	98.9
PRK14953	486	DNA polymerase III subunits gamma and tau; Provisi	98.9
CHL00195	489	ycf46 Ycf46; Provisional	98.9
COG1222	406	RPT1 ATP-dependent 26S proteasome regulatory subun	98.89
PRK14950	585	DNA polymerase III subunits gamma and tau; Provisi	98.89
PRK08451	535	DNA polymerase III subunits gamma and tau; Validat	98.88
PRK06305	451	DNA polymerase III subunits gamma and tau; Validat	98.88
PRK11034	758	clpA ATP-dependent Clp protease ATP-binding subuni	98.87
cd03216	163	ABC_Carb_Monos_I This family represents the domain	98.87
cd03223	166	ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cass	98.87
COG0488	530	Uup ATPase components of ABC transporters with dup	98.87
cd03222	177	ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibi	98.86
COG1136	226	SalX ABC-type antimicrobial peptide transport syst	98.86
TIGR02880	284	cbbX_cfxQ probable Rubsico expression protein CbbX	98.85
PRK07133	725	DNA polymerase III subunits gamma and tau; Validat	98.85
PF00004	132	AAA: ATPase family associated with various cellula	98.85
PRK14954	620	DNA polymerase III subunits gamma and tau; Provisi	98.85
COG1116	248	TauB ABC-type nitrate/sulfonate/bicarbonate transp	98.84
cd03214	180	ABC_Iron-Siderophores_B12_Hemin ABC transporters,	98.83
PRK06647	563	DNA polymerase III subunits gamma and tau; Validat	98.83
PRK14965	576	DNA polymerase III subunits gamma and tau; Provisi	98.83
TIGR01243	733	CDC48 AAA family ATPase, CDC48 subfamily. This sub	98.83
cd03230	173	ABC_DR_subfamily_A This family of ATP-binding prot	98.83
cd03221	144	ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is	98.82
COG4555	245	NatA ABC-type Na+ transport system, ATPase compone	98.82
cd03238	176	ABC_UvrA The excision repair protein UvrA; Nucleot	98.82
COG0396	251	sufC Cysteine desulfurase activator ATPase [Posttr	98.82
PRK14948	620	DNA polymerase III subunits gamma and tau; Provisi	98.81
KOG0733	802	consensus Nuclear AAA ATPase (VCP subfamily) [Post	98.81
COG0466	782	Lon ATP-dependent Lon protease, bacterial type [Po	98.79
KOG2227	529	consensus Pre-initiation complex, subunit CDC6, AA	98.79
COG1124	252	DppF ABC-type dipeptide/oligopeptide/nickel transp	98.78
cd03246	173	ABCC_Protease_Secretion This family represents the	98.77
PRK14971	614	DNA polymerase III subunits gamma and tau; Provisi	98.77
cd03228	171	ABCC_MRP_Like The MRP (Mutidrug Resistance Protein	98.77
TIGR01243	733	CDC48 AAA family ATPase, CDC48 subfamily. This sub	98.77
cd03229	178	ABC_Class3 This class is comprised of all BPD (Bin	98.76
COG2812	515	DnaX DNA polymerase III, gamma/tau subunits [DNA r	98.76
cd03215	182	ABC_Carb_Monos_II This family represents domain II	98.76
TIGR00602	637	rad24 checkpoint protein rad24. This family is bas	98.75
PRK08181	269	transposase; Validated	98.75
TIGR00763	775	lon ATP-dependent protease La. This protein is ind	98.74
cd03247	178	ABCC_cytochrome_bd The CYD subfamily implicated in	98.74
PRK07399	314	DNA polymerase III subunit delta'; Validated	98.74
PF07693	325	KAP_NTPase: KAP family P-loop domain; InterPro: IP	98.73
PF05673	249	DUF815: Protein of unknown function (DUF815); Inte	98.73
cd03237	246	ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 o	98.72
cd00267	157	ABC_ATPase ABC (ATP-binding cassette) transporter	98.71
cd03213	194	ABCG_EPDR ABCG transporters are involved in eye pi	98.71
COG4608	268	AppF ABC-type oligopeptide transport system, ATPas	98.71
PRK08116	268	hypothetical protein; Validated	98.7
TIGR00960	216	3a0501s02 Type II (General) Secretory Pathway (IIS	98.7
COG1126	240	GlnQ ABC-type polar amino acid transport system, A	98.69
smart00382	148	AAA ATPases associated with a variety of cellular	98.69
KOG2004	906	consensus Mitochondrial ATP-dependent protease PIM	98.69
PRK13539	207	cytochrome c biogenesis protein CcmA; Provisional	98.69
PRK13543	214	cytochrome c biogenesis protein CcmA; Provisional	98.68
cd03232	192	ABC_PDR_domain2 The pleiotropic drug resistance-li	98.68
COG2884	223	FtsE Predicted ATPase involved in cell division [C	98.68
TIGR01188	302	drrA daunorubicin resistance ABC transporter ATP-b	98.67
PRK07952	244	DNA replication protein DnaC; Validated	98.67
cd03269	210	ABC_putative_ATPase This subfamily is involved in	98.66
cd03224	222	ABC_TM1139_LivF_branched LivF (TM1139) is part of	98.66
PRK12377	248	putative replication protein; Provisional	98.65
PF14516	331	AAA_35: AAA-like domain	98.65
PRK06835	329	DNA replication protein DnaC; Validated	98.65
PRK11248	255	tauB taurine transporter ATP-binding subunit; Prov	98.65
TIGR02903	615	spore_lon_C ATP-dependent protease, Lon family. Me	98.65
COG2255	332	RuvB Holliday junction resolvasome, helicase subun	98.65
COG1223	368	Predicted ATPase (AAA+ superfamily) [General funct	98.64
COG1131	293	CcmA ABC-type multidrug transport system, ATPase c	98.64
cd03226	205	ABC_cobalt_CbiO_domain2 Domain II of the ABC compo	98.64
PRK06921	266	hypothetical protein; Provisional	98.64
cd03235	213	ABC_Metallic_Cations ABC component of the metal-ty	98.63
cd03268	208	ABC_BcrA_bacitracin_resist The BcrA subfamily repr	98.63
cd03259	213	ABC_Carb_Solutes_like ABC Carbohydrate and Solute	98.63
KOG2543	438	consensus Origin recognition complex, subunit 5 [R	98.63
cd03225	211	ABC_cobalt_CbiO_domain1 Domain I of the ABC compon	98.63
cd03265	220	ABC_DrrA DrrA is the ATP-binding protein component	98.63
KOG0734	752	consensus AAA+-type ATPase containing the peptidas	98.62
TIGR02324	224	CP_lyasePhnL phosphonate C-P lyase system protein	98.62
cd03261	235	ABC_Org_Solvent_Resistant ABC (ATP-binding cassett	98.62
TIGR02673	214	FtsE cell division ATP-binding protein FtsE. This	98.61
KOG0733	802	consensus Nuclear AAA ATPase (VCP subfamily) [Post	98.61
cd03292	214	ABC_FtsE_transporter FtsE is a hydrophilic nucleot	98.61
PLN00020	413	ribulose bisphosphate carboxylase/oxygenase activa	98.61
PF01695	178	IstB_IS21: IstB-like ATP binding protein; InterPro	98.6
COG0542	786	clpA ATP-binding subunits of Clp protease and DnaK	98.6
cd03293	220	ABC_NrtD_SsuB_transporters NrtD and SsuB are the A	98.6
PRK11124	242	artP arginine transporter ATP-binding subunit; Pro	98.6
PRK11247	257	ssuB aliphatic sulfonates transport ATP-binding su	98.6
cd03217	200	ABC_FeS_Assembly ABC-type transport system involve	98.6
PRK13537	306	nodulation ABC transporter NodI; Provisional	98.6
cd03262	213	ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-	98.6
cd03255	218	ABC_MJ0796_Lo1CDE_FtsE This family is comprised of	98.59
cd03233	202	ABC_PDR_domain1 The pleiotropic drug resistance (P	98.59
PRK08058	329	DNA polymerase III subunit delta'; Validated	98.59
TIGR02315	243	ABC_phnC phosphonate ABC transporter, ATP-binding	98.59
PRK09544	251	znuC high-affinity zinc transporter ATPase; Review	98.59
cd03263	220	ABC_subfamily_A The ABCA subfamily mediates the tr	98.58
TIGR03740	223	galliderm_ABC gallidermin-class lantibiotic protec	98.58
cd03218	232	ABC_YhbG The ABC transporters belonging to the Yhb	98.58
PRK10908	222	cell division protein FtsE; Provisional	98.58
cd03250	204	ABCC_MRP_domain1 Domain 1 of the ABC subfamily C.	98.58
cd03301	213	ABC_MalK_N The N-terminal ATPase domain of the mal	98.58
PRK11819	556	putative ABC transporter ATP-binding protein; Revi	98.58
PRK05707	328	DNA polymerase III subunit delta'; Validated	98.58
TIGR02640	262	gas_vesic_GvpN gas vesicle protein GvpN. Members o	98.58
cd03266	218	ABC_NatA_sodium_exporter NatA is the ATPase compon	98.58
COG1373	398	Predicted ATPase (AAA+ superfamily) [General funct	98.58
PRK06526	254	transposase; Provisional	98.57
TIGR01288	303	nodI ATP-binding ABC transporter family nodulation	98.57
PRK10787	784	DNA-binding ATP-dependent protease La; Provisional	98.56
cd03258	233	ABC_MetN_methionine_transporter MetN (also known a	98.56
COG3267	269	ExeA Type II secretory pathway, component ExeA (pr	98.56
COG4133	209	CcmA ABC-type transport system involved in cytochr	98.56
TIGR01277	213	thiQ thiamine ABC transporter, ATP-binding protein	98.55
cd03220	224	ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transpo	98.55
COG4619	223	ABC-type uncharacterized transport system, ATPase	98.55
TIGR03410	230	urea_trans_UrtE urea ABC transporter, ATP-binding	98.54
COG1484	254	DnaC DNA replication protein [DNA replication, rec	98.54
PRK13546	264	teichoic acids export protein ATP-binding subunit;	98.54
PRK11264	250	putative amino-acid ABC transporter ATP-binding pr	98.54
TIGR01184	230	ntrCD nitrate transport ATP-binding subunits C and	98.53
cd03296	239	ABC_CysA_sulfate_importer Part of the ABC transpor	98.53
KOG0730	693	consensus AAA+-type ATPase [Posttranslational modi	98.53
PRK13536	340	nodulation factor exporter subunit NodI; Provision	98.53
PRK11614	237	livF leucine/isoleucine/valine transporter ATP-bin	98.53
PRK13538	204	cytochrome c biogenesis protein CcmA; Provisional	98.53
cd01128	249	rho_factor Transcription termination factor rho is	98.53
TIGR03522	301	GldA_ABC_ATP gliding motility-associated ABC trans	98.52
TIGR03771	223	anch_rpt_ABC anchored repeat-type ABC transporter,	98.52
PRK13409	590	putative ATPase RIL; Provisional	98.52
cd03298	211	ABC_ThiQ_thiamine_transporter ABC-type thiamine tr	98.52
cd03294	269	ABC_Pro_Gly_Bertaine This family comprises the gly	98.52
KOG0744	423	consensus AAA+-type ATPase [Posttranslational modi	98.51
cd03267	236	ABC_NatA_like Similar in sequence to NatA, this is	98.51
KOG0738	491	consensus AAA+-type ATPase [Posttranslational modi	98.51
cd03264	211	ABC_drug_resistance_like ABC-type multidrug transp	98.51
PRK09183	259	transposase/IS protein; Provisional	98.51
PRK11000	369	maltose/maltodextrin transporter ATP-binding prote	98.51
cd03256	241	ABC_PhnC_transporter ABC-type phosphate/phosphonat	98.51
TIGR03719	552	ABC_ABC_ChvD ATP-binding cassette protein, ChvD fa	98.51
COG1122	235	CbiO ABC-type cobalt transport system, ATPase comp	98.51
COG1127	263	Ttg2A ABC-type transport system involved in resist	98.5
TIGR03873	256	F420-0_ABC_ATP proposed F420-0 ABC transporter, AT	98.5
COG0470	325	HolB ATPase involved in DNA replication [DNA repli	98.5
cd03231	201	ABC_CcmA_heme_exporter CcmA, the ATP-binding compo	98.5
PRK11153	343	metN DL-methionine transporter ATP-binding subunit	98.49
PRK10895	241	lipopolysaccharide ABC transporter ATP-binding pro	98.49
PRK13647	274	cbiO cobalt transporter ATP-binding subunit; Provi	98.49
PRK15439	510	autoinducer 2 ABC transporter ATP-binding protein	98.49
cd03297	214	ABC_ModC_molybdenum_transporter ModC is an ABC-typ	98.49
cd01131	198	PilT Pilus retraction ATPase PilT. PilT is a nucle	98.49
PF10443	431	RNA12: RNA12 protein; InterPro: IPR018850 Mitochon	98.49
COG4152	300	ABC-type uncharacterized transport system, ATPase	98.49
KOG2228	408	consensus Origin recognition complex, subunit 4 [R	98.49
PRK10619	257	histidine/lysine/arginine/ornithine transporter su	98.49
PRK09493	240	glnQ glutamine ABC transporter ATP-binding protein	98.48
PRK14259	269	phosphate ABC transporter ATP-binding protein; Pro	98.48
TIGR02639	731	ClpA ATP-dependent Clp protease ATP-binding subuni	98.48
PRK10865	857	protein disaggregation chaperone; Provisional	98.48
PRK11144	352	modC molybdate transporter ATP-binding protein; Pr	98.48
COG0464	494	SpoVK ATPases of the AAA+ class [Posttranslational	98.47
PRK15177	213	Vi polysaccharide export ATP-binding protein VexC;	98.47
PRK10771	232	thiQ thiamine transporter ATP-binding subunit; Pro	98.47
cd03219	236	ABC_Mj1267_LivG_branched The Mj1267/LivG ABC trans	98.47
PRK10584	228	putative ABC transporter ATP-binding protein YbbA;	98.47
PRK11300	255	livG leucine/isoleucine/valine transporter ATP-bin	98.47
COG1118	345	CysA ABC-type sulfate/molybdate transport systems,	98.47
PRK11147	635	ABC transporter ATPase component; Reviewed	98.47
TIGR02314	343	ABC_MetN D-methionine ABC transporter, ATP-binding	98.47
TIGR03346	852	chaperone_ClpB ATP-dependent chaperone ClpB. Membe	98.47
TIGR00972	247	3a0107s01c2 phosphate ABC transporter, ATP-binding	98.46
PF14532	138	Sigma54_activ_2: Sigma-54 interaction domain; PDB:	98.46
PRK13540	200	cytochrome c biogenesis protein CcmA; Provisional	98.46
PRK13651	305	cobalt transporter ATP-binding subunit; Provisiona	98.46
TIGR01166	190	cbiO cobalt transport protein ATP-binding subunit.	98.46
TIGR02211	221	LolD_lipo_ex lipoprotein releasing system, ATP-bin	98.46
PF13177	162	DNA_pol3_delta2: DNA polymerase III, delta subunit	98.46
PRK13545	549	tagH teichoic acids export protein ATP-binding sub	98.46
PRK10636	638	putative ABC transporter ATP-binding protein; Prov	98.46
TIGR03258	362	PhnT 2-aminoethylphosphonate ABC transport system,	98.46
cd03253	236	ABCC_ATM1_transporter ATM1 is an ABC transporter t	98.46
PRK15064	530	ABC transporter ATP-binding protein; Provisional	98.45
cd03248	226	ABCC_TAP TAP, the Transporter Associated with Anti	98.45
PRK13638	271	cbiO cobalt transporter ATP-binding subunit; Provi	98.45
cd03281	213	ABC_MSH5_euk MutS5 homolog in eukaryotes. The MutS	98.45
PRK14247	250	phosphate ABC transporter ATP-binding protein; Pro	98.45
cd03300	232	ABC_PotA_N PotA is an ABC-type transporter and the	98.45
PRK13643	288	cbiO cobalt transporter ATP-binding subunit; Provi	98.45
PRK10575	265	iron-hydroxamate transporter ATP-binding subunit;	98.44
PRK08939	306	primosomal protein DnaI; Reviewed	98.44
PRK10636	638	putative ABC transporter ATP-binding protein; Prov	98.44
PRK09580	248	sufC cysteine desulfurase ATPase component; Review	98.44
cd03295	242	ABC_OpuCA_Osmoprotection OpuCA is a the ATP bindin	98.44
KOG1514	767	consensus Origin recognition complex, subunit 1, a	98.44
PRK10733	644	hflB ATP-dependent metalloprotease; Reviewed	98.44
COG4586	325	ABC-type uncharacterized transport system, ATPase	98.44
cd03251	234	ABCC_MsbA MsbA is an essential ABC transporter, cl	98.43
cd03369	207	ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-ty	98.43
TIGR03864	236	PQQ_ABC_ATP ABC transporter, ATP-binding subunit,	98.43
PRK11331	459	5-methylcytosine-specific restriction enzyme subun	98.43
TIGR03608	206	L_ocin_972_ABC putative bacteriocin export ABC tra	98.43
PRK14250	241	phosphate ABC transporter ATP-binding protein; Pro	98.43
PRK13541	195	cytochrome c biogenesis protein CcmA; Provisional	98.43
TIGR01978	243	sufC FeS assembly ATPase SufC. SufC is part of the	98.43
TIGR03005	252	ectoine_ehuA ectoine/hydroxyectoine ABC transporte	98.43
PRK11650	356	ugpC glycerol-3-phosphate transporter ATP-binding	98.42
PRK11231	255	fecE iron-dicitrate transporter ATP-binding subuni	98.42
PRK15056	272	manganese/iron transporter ATP-binding protein; Pr	98.42
cd03245	220	ABCC_bacteriocin_exporters ABC-type bacteriocin ex	98.42
TIGR02770	230	nickel_nikD nickel import ATP-binding protein NikD	98.42
TIGR03411	242	urea_trans_UrtD urea ABC transporter, ATP-binding	98.42
PRK13652	277	cbiO cobalt transporter ATP-binding subunit; Provi	98.41
PRK14249	251	phosphate ABC transporter ATP-binding protein; Pro	98.41
PRK09536	402	btuD corrinoid ABC transporter ATPase; Reviewed	98.41
PRK13641	287	cbiO cobalt transporter ATP-binding subunit; Provi	98.41
PRK10536	262	hypothetical protein; Provisional	98.41
PRK11831	269	putative ABC transporter ATP-binding protein YrbF;	98.41
PRK10938	490	putative molybdenum transport ATP-binding protein	98.41
KOG0652	424	consensus 26S proteasome regulatory complex, ATPas	98.41
cd03244	221	ABCC_MRP_domain2 Domain 2 of the ABC subfamily C.	98.4
COG3839	338	MalK ABC-type sugar transport systems, ATPase comp	98.4
TIGR02142	354	modC_ABC molybdenum ABC transporter, ATP-binding p	98.4
TIGR00968	237	3a0106s01 sulfate ABC transporter, ATP-binding pro	98.4
TIGR03265	353	PhnT2 putative 2-aminoethylphosphonate ABC transpo	98.4
cd03252	237	ABCC_Hemolysin The ABC-transporter hemolysin B is	98.4
cd01120	165	RecA-like_NTPases RecA-like NTPases. This family i	98.4
PRK10762	501	D-ribose transporter ATP binding protein; Provisio	98.39
PRK14273	254	phosphate ABC transporter ATP-binding protein; Pro	98.39
PRK14272	252	phosphate ABC transporter ATP-binding protein; Pro	98.39
cd03254	229	ABCC_Glucan_exporter_like Glucan exporter ATP-bind	98.39
cd03249	238	ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6)	98.39
PRK10070	400	glycine betaine transporter ATP-binding subunit; P	98.39
TIGR01189	198	ccmA heme ABC exporter, ATP-binding protein CcmA.	98.39
cd03236	255	ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 o	98.38
TIGR02858	270	spore_III_AA stage III sporulation protein AA. Mem	98.38
PRK14265	274	phosphate ABC transporter ATP-binding protein; Pro	98.38
PRK11629	233	lolD lipoprotein transporter ATP-binding subunit;	98.37
PRK11432	351	fbpC ferric transporter ATP-binding subunit; Provi	98.37
PRK10982	491	galactose/methyl galaxtoside transporter ATP-bindi	98.37
CHL00131	252	ycf16 sulfate ABC transporter protein; Validated	98.37
PRK10419	268	nikE nickel transporter ATP-binding protein NikE;	98.37
PRK11147	635	ABC transporter ATPase component; Reviewed	98.37
cd03283	199	ABC_MutS-like MutS-like homolog in eukaryotes. The	98.37
PRK06067	234	flagellar accessory protein FlaH; Validated	98.36
KOG0066	807	consensus eIF2-interacting protein ABC50 (ABC supe	98.36
COG1123	539	ATPase components of various ABC-type transport sy	98.36
PRK13531	498	regulatory ATPase RavA; Provisional	98.36
PRK13649	280	cbiO cobalt transporter ATP-binding subunit; Provi	98.36
cd03257	228	ABC_NikE_OppD_transporters The ABC transporter sub	98.36
PRK14269	246	phosphate ABC transporter ATP-binding protein; Pro	98.36
PRK09984	262	phosphonate/organophosphate ester transporter subu	98.36
PF04665	241	Pox_A32: Poxvirus A32 protein; InterPro: IPR006758	98.36
TIGR03345	852	VI_ClpV1 type VI secretion ATPase, ClpV1 family. M	98.36
PRK10851	353	sulfate/thiosulfate transporter subunit; Provision	98.35
PRK10253	265	iron-enterobactin transporter ATP-binding protein;	98.35
PRK13645	289	cbiO cobalt transporter ATP-binding subunit; Provi	98.35
PRK10247	225	putative ABC transporter ATP-binding protein YbbL;	98.35
PRK14235	267	phosphate transporter ATP-binding protein; Provisi	98.35
PRK11288	501	araG L-arabinose transporter ATP-binding protein;	98.35
PRK13646	286	cbiO cobalt transporter ATP-binding subunit; Provi	98.35
cd03260	227	ABC_PstB_phosphate_transporter Phosphate uptake is	98.35
PRK09700	510	D-allose transporter ATP-binding protein; Provisio	98.35
PRK13650	279	cbiO cobalt transporter ATP-binding subunit; Provi	98.34
TIGR02902	531	spore_lonB ATP-dependent protease LonB. Members of	98.34
PRK15064	530	ABC transporter ATP-binding protein; Provisional	98.34
TIGR00767	415	rho transcription termination factor Rho. Members	98.34
PRK14267	253	phosphate ABC transporter ATP-binding protein; Pro	98.34
PRK14275	286	phosphate ABC transporter ATP-binding protein; Pro	98.33
KOG0731	774	consensus AAA+-type ATPase containing the peptidas	98.33
cd03278	197	ABC_SMC_barmotin Barmotin is a tight junction-asso	98.33
cd03299	235	ABC_ModC_like Archeal protein closely related to M	98.33
PRK11701	258	phnK phosphonate C-P lyase system protein PhnK; Pr	98.33
PRK14242	253	phosphate transporter ATP-binding protein; Provisi	98.33
PRK14262	250	phosphate ABC transporter ATP-binding protein; Pro	98.33
COG1117	253	PstB ABC-type phosphate transport system, ATPase c	98.33
PRK15439	510	autoinducer 2 ABC transporter ATP-binding protein	98.33
PRK10744	260	pstB phosphate transporter ATP-binding protein; Pr	98.33
CHL00095	821	clpC Clp protease ATP binding subunit	98.33
PRK13631	320	cbiO cobalt transporter ATP-binding subunit; Provi	98.32
TIGR02974	329	phageshock_pspF psp operon transcriptional activat	98.32
PRK13644	274	cbiO cobalt transporter ATP-binding subunit; Provi	98.32
PRK14261	253	phosphate ABC transporter ATP-binding protein; Pro	98.32
TIGR01186	363	proV glycine betaine/L-proline transport ATP bindi	98.32
cd03243	202	ABC_MutS_homologs The MutS protein initiates DNA m	98.32
cd03289	275	ABCC_CFTR2 The CFTR subfamily domain 2. The cystic	98.32
PRK13409	590	putative ATPase RIL; Provisional	98.32
PRK14238	271	phosphate transporter ATP-binding protein; Provisi	98.31
TIGR02633	500	xylG D-xylose ABC transporter, ATP-binding protein	98.31
PRK09452	375	potA putrescine/spermidine ABC transporter ATPase	98.31
KOG0741	744	consensus AAA+-type ATPase [Posttranslational modi	98.31
PRK06871	325	DNA polymerase III subunit delta'; Validated	98.31
PRK11288	501	araG L-arabinose transporter ATP-binding protein;	98.31
smart00534	185	MUTSac ATPase domain of DNA mismatch repair MUTS f	98.31
COG1119	257	ModF ABC-type molybdenum transport system, ATPase	98.31
KOG0739	439	consensus AAA+-type ATPase [Posttranslational modi	98.31
PRK13549	506	xylose transporter ATP-binding subunit; Provisiona	98.31
PRK14237	267	phosphate transporter ATP-binding protein; Provisi	98.31
PRK15112	267	antimicrobial peptide ABC system ATP-binding prote	98.31
PRK13636	283	cbiO cobalt transporter ATP-binding subunit; Provi	98.31
PRK15079	331	oligopeptide ABC transporter ATP-binding protein O	98.3
PRK14248	268	phosphate ABC transporter ATP-binding protein; Pro	98.3
PRK14245	250	phosphate ABC transporter ATP-binding protein; Pro	98.3
PRK10418	254	nikD nickel transporter ATP-binding protein NikD;	98.3
PRK10982	491	galactose/methyl galaxtoside transporter ATP-bindi	98.3
PRK14240	250	phosphate transporter ATP-binding protein; Provisi	98.3
PRK13548	258	hmuV hemin importer ATP-binding subunit; Provision	98.3
COG3842	352	PotA ABC-type spermidine/putrescine transport syst	98.3
cd03287	222	ABC_MSH3_euk MutS3 homolog in eukaryotes. The MutS	98.3
TIGR01817	534	nifA Nif-specific regulatory protein. This model r	98.3
PRK11607	377	potG putrescine transporter ATP-binding subunit; P	98.29
cd03240	204	ABC_Rad50 The catalytic domains of Rad50 are simil	98.29
PRK14253	249	phosphate ABC transporter ATP-binding protein; Pro	98.29
TIGR03415	382	ABC_choXWV_ATP choline ABC transporter, ATP-bindin	98.29
PRK13549	506	xylose transporter ATP-binding subunit; Provisiona	98.29
PRK13639	275	cbiO cobalt transporter ATP-binding subunit; Provi	98.29
TIGR03269	520	met_CoM_red_A2 methyl coenzyme M reductase system,	98.29
PRK13635	279	cbiO cobalt transporter ATP-binding subunit; Provi	98.29
COG2607	287	Predicted ATPase (AAA+ superfamily) [General funct	98.29
KOG0728	404	consensus 26S proteasome regulatory complex, ATPas	98.29
PRK11308	327	dppF dipeptide transporter ATP-binding subunit; Pr	98.29
PRK14268	258	phosphate ABC transporter ATP-binding protein; Pro	98.29
PRK13634	290	cbiO cobalt transporter ATP-binding subunit; Provi	98.29
PRK11608	326	pspF phage shock protein operon transcriptional ac	98.29
COG3840	231	ThiQ ABC-type thiamine transport system, ATPase co	98.29
PRK09361	225	radB DNA repair and recombination protein RadB; Pr	98.29
cd03234	226	ABCG_White The White subfamily represents ABC tran	98.29
PRK11034	758	clpA ATP-dependent Clp protease ATP-binding subuni	98.29
PRK11819	556	putative ABC transporter ATP-binding protein; Revi	98.28
COG2274	709	SunT ABC-type bacteriocin/lantibiotic exporters, c	98.28
PRK14274	259	phosphate ABC transporter ATP-binding protein; Pro	98.28
cd03291	282	ABCC_CFTR1 The CFTR subfamily domain 1. The cystic	98.28
TIGR02633	500	xylG D-xylose ABC transporter, ATP-binding protein	98.28
PRK14243	264	phosphate transporter ATP-binding protein; Provisi	98.28
PRK14255	252	phosphate ABC transporter ATP-binding protein; Pro	98.28
COG0542	786	clpA ATP-binding subunits of Clp protease and DnaK	98.28
PRK14241	258	phosphate transporter ATP-binding protein; Provisi	98.28
PRK14270	251	phosphate ABC transporter ATP-binding protein; Pro	98.27
PF03215	519	Rad17: Rad17 cell cycle checkpoint protein	98.27
PRK13640	282	cbiO cobalt transporter ATP-binding subunit; Provi	98.27
COG4615	546	PvdE ABC-type siderophore export system, fused ATP	98.27
PF05621	302	TniB: Bacterial TniB protein; InterPro: IPR008868	98.27
PRK14256	252	phosphate ABC transporter ATP-binding protein; Pro	98.27
TIGR02868	529	CydC thiol reductant ABC exporter, CydC subunit. T	98.27
TIGR03269	520	met_CoM_red_A2 methyl coenzyme M reductase system,	98.27
PRK14239	252	phosphate transporter ATP-binding protein; Provisi	98.27
KOG0736	953	consensus Peroxisome assembly factor 2 containing	98.27
PRK11176	582	lipid transporter ATP-binding/permease protein; Pr	98.27
PRK04296	190	thymidine kinase; Provisional	98.26
PRK13657	588	cyclic beta-1,2-glucan ABC transporter; Provisiona	98.26
PRK10762	501	D-ribose transporter ATP binding protein; Provisio	98.26
cd03290	218	ABCC_SUR1_N The SUR domain 1. The sulfonylurea rec	98.26
PHA00729	226	NTP-binding motif containing protein	98.26
PRK14260	259	phosphate ABC transporter ATP-binding protein; Pro	98.26
TIGR02857	529	CydD thiol reductant ABC exporter, CydD subunit. U	98.25
PRK03695	248	vitamin B12-transporter ATPase; Provisional	98.25
TIGR02769	265	nickel_nikE nickel import ATP-binding protein NikE	98.25
cd03279	213	ABC_sbcCD SbcCD and other Mre11/Rad50 (MR) complex	98.25
TIGR02323	253	CP_lyasePhnK phosphonate C-P lyase system protein	98.25
PHA02244	383	ATPase-like protein	98.25
PRK13547	272	hmuV hemin importer ATP-binding subunit; Provision	98.25
PRK13633	280	cobalt transporter ATP-binding subunit; Provisiona	98.24
PRK14246	257	phosphate ABC transporter ATP-binding protein; Pro	98.24
PRK14271	276	phosphate ABC transporter ATP-binding protein; Pro	98.24
TIGR03719	552	ABC_ABC_ChvD ATP-binding cassette protein, ChvD fa	98.24
PRK14244	251	phosphate ABC transporter ATP-binding protein; Pro	98.24
cd01121	372	Sms Sms (bacterial radA) DNA repair protein. This	98.24
KOG0991	333	consensus Replication factor C, subunit RFC2 [Repl	98.24
cd03288	257	ABCC_SUR2 The SUR domain 2. The sulfonylurea recep	98.24
PRK09376	416	rho transcription termination factor Rho; Provisio	98.24
COG4181	228	Predicted ABC-type transport system involved in ly	98.24
cd01129	264	PulE-GspE PulE/GspE The type II secretory pathway	98.23
PRK13632	271	cbiO cobalt transporter ATP-binding subunit; Provi	98.23
TIGR01420	343	pilT_fam pilus retraction protein PilT. This model	98.23
KOG0735	952	consensus AAA+-type ATPase [Posttranslational modi	98.23
PRK09700	510	D-allose transporter ATP-binding protein; Provisio	98.23
PLN03073	718	ABC transporter F family; Provisional	98.23
PRK08769	319	DNA polymerase III subunit delta'; Validated	98.23
PRK13648	269	cbiO cobalt transporter ATP-binding subunit; Provi	98.23
PRK15093	330	antimicrobial peptide ABC transporter ATP-binding	98.22
PLN03073	718	ABC transporter F family; Provisional	98.22
PF00158	168	Sigma54_activat: Sigma-54 interaction domain; Inte	98.22
PRK14251	251	phosphate ABC transporter ATP-binding protein; Pro	98.22
PRK13637	287	cbiO cobalt transporter ATP-binding subunit; Provi	98.22
PRK14236	272	phosphate transporter ATP-binding protein; Provisi	98.22
KOG0727	408	consensus 26S proteasome regulatory complex, ATPas	98.22
PRK11174	588	cysteine/glutathione ABC transporter membrane/ATP-	98.22
TIGR02203	571	MsbA_lipidA lipid A export permease/ATP-binding pr	98.22
PRK13642	277	cbiO cobalt transporter ATP-binding subunit; Provi	98.21
KOG0743	457	consensus AAA+-type ATPase [Posttranslational modi	98.21
PRK14254	285	phosphate ABC transporter ATP-binding protein; Pro	98.21
COG0410	237	LivF ABC-type branched-chain amino acid transport	98.2
cd01124	187	KaiC KaiC is a circadian clock protein primarily f	98.2
PRK07993	334	DNA polymerase III subunit delta'; Validated	98.2
PRK14263	261	phosphate ABC transporter ATP-binding protein; Pro	98.2
TIGR02982	220	heterocyst_DevA ABC exporter ATP-binding subunit,	98.2
PRK13695	174	putative NTPase; Provisional	98.2
cd03282	204	ABC_MSH4_euk MutS4 homolog in eukaryotes. The MutS	98.2
COG1125	309	OpuBA ABC-type proline/glycine betaine transport s	98.2
PF13604	196	AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL	98.19
KOG0735	952	consensus AAA+-type ATPase [Posttranslational modi	98.19
PRK09473	330	oppD oligopeptide transporter ATP-binding componen	98.19
smart00763	361	AAA_PrkA PrkA AAA domain. This is a family of PrkA	98.19
cd01393	226	recA_like RecA is a bacterial enzyme which has rol	98.19
cd03227	162	ABC_Class2 ABC-type Class 2 contains systems invol	98.19

>PLN03210 Resistant to P

Probab=99.95  E-value=5.9e-27  Score=214.40  Aligned_cols=211  Identities=35%  Similarity=0.617  Sum_probs=165.9

Q ss_pred             ChhhHHHHHHHHHHhhcCCCCCCcccccccchhHHHHHHHHHhcCCCCeeEEEEEecCCCcHHHHHHHHHHHhcCCCCce
Q 039455            1 RESELIKDIVKEISKRLNPTFPSAVDGLVGIASRMEKMNGYLEAGLDDVRFIGICGMGGIGKTTLAKVLYNTLKDQFEAS   80 (216)
Q Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~vgR~~~~~~l~~~l~~~~~~~~~i~I~G~~GiGKTtL~~~~~~~~~~~~~~~   80 (216)
                      +|++++++|++++......+++...+.++||++.++++..++....++.++++|+||+|+||||||+.+++++..+|...
T Consensus       159 ~E~~~i~~Iv~~v~~~l~~~~~~~~~~~vG~~~~l~~l~~lL~l~~~~~~vvgI~G~gGiGKTTLA~~l~~~l~~~F~g~  238 (1153)
T PLN03210        159 NEAKMIEEIANDVLGKLNLTPSNDFEDFVGIEDHIAKMSSLLHLESEEVRMVGIWGSSGIGKTTIARALFSRLSRQFQSS  238 (1153)
T ss_pred             CHHHHHHHHHHHHHHhhccccCcccccccchHHHHHHHHHHHccccCceEEEEEEcCCCCchHHHHHHHHHHHhhcCCeE
Confidence            58999999999999999888888889999999999999999886667789999999999999999999999998888887


Q ss_pred             Eeeccc--cccc---cc-----cC-chHHHHHHHHHHHhhccccccchhhhHHHHHHHhCCceEEEEEeCCCCHHHHHHh
Q 039455           81 SFLANV--REVS---VT-----RG-LVPLQEQLLSEVLMERNLIIWDVHKGINLIRWRLCRKRVLVVLDDVDQLEQLQAL  149 (216)
Q Consensus        81 ~~~~~~--~~~~---~~-----~~-~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~llvlDd~~~~~~~~~l  149 (216)
                      .|+...  ....   ..     .. ......+++..+..........    ...+++.+.++++||||||+|..++++.+
T Consensus       239 vfv~~~~v~~~~~~~~~~~~~~~~~~~~l~~~~l~~il~~~~~~~~~----~~~~~~~L~~krvLLVLDdv~~~~~l~~L  314 (1153)
T PLN03210        239 VFIDRAFISKSMEIYSSANPDDYNMKLHLQRAFLSEILDKKDIKIYH----LGAMEERLKHRKVLIFIDDLDDQDVLDAL  314 (1153)
T ss_pred             EEeeccccccchhhcccccccccchhHHHHHHHHHHHhCCCCcccCC----HHHHHHHHhCCeEEEEEeCCCCHHHHHHH
Confidence            776421  1100   00     00 1123334444443332221111    24567778899999999999999999888


Q ss_pred             hcCCCCCCCCcEEEEEeCCchhhhccCCcceEEecCCChHHHHHHHhhhhcCCCCCchhHhhhccc
Q 039455          150 AGNHDWFGFGSRIIITTRDEHVLKGHGVTNIYKVRGLDYVEALQLFHLKVSKGKQPTDDRVELSKC  215 (216)
Q Consensus       150 ~~~~~~~~~~~~il~tsr~~~~~~~~~~~~~~~l~~l~~~~~~~ll~~~~~~~~~~~~~~~~l~~~  215 (216)
                      .......++|++||+|||+..++......+.++++.++.++|++||.+++|....+.+.+.+++++
T Consensus       315 ~~~~~~~~~GsrIIiTTrd~~vl~~~~~~~~~~v~~l~~~ea~~LF~~~Af~~~~~~~~~~~l~~~  380 (1153)
T PLN03210        315 AGQTQWFGSGSRIIVITKDKHFLRAHGIDHIYEVCLPSNELALEMFCRSAFKKNSPPDGFMELASE  380 (1153)
T ss_pred             HhhCccCCCCcEEEEEeCcHHHHHhcCCCeEEEecCCCHHHHHHHHHHHhcCCCCCcHHHHHHHHH
Confidence            776665678999999999999887776778999999999999999999999877666677777654

syringae 6; Provisional

>PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals []

Probab=99.95  E-value=5.7e-27  Score=185.53  Aligned_cols=169  Identities=32%  Similarity=0.443  Sum_probs=129.4

Q ss_pred             chhHHHHHHHHHhcCCCCeeEEEEEecCCCcHHHHHHHHHHH--hcCCCCceEeeccccccccccCchHHHHHHHHHHHh
Q 039455           31 IASRMEKMNGYLEAGLDDVRFIGICGMGGIGKTTLAKVLYNT--LKDQFEASSFLANVREVSVTRGLVPLQEQLLSEVLM  108 (216)
Q Consensus        31 R~~~~~~l~~~l~~~~~~~~~i~I~G~~GiGKTtL~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~  108 (216)
                      |+.++++|.+.|....+...+|+|+|++|+||||||..+++.  .+.+|..++|+....    ......+...++..+..
T Consensus         1 re~~~~~l~~~L~~~~~~~~~v~I~G~~G~GKT~LA~~~~~~~~~~~~f~~v~wv~~~~----~~~~~~~~~~i~~~l~~   76 (287)
T PF00931_consen    1 REKEIEKLKDWLLDNSNEVRVVAIVGMGGIGKTTLARQVARDLRIKNRFDGVIWVSLSK----NPSLEQLLEQILRQLGE   76 (287)
T ss_dssp             -HHHHHHHHHHHHTTTTSSEEEEEEESTTSSHHHHHHHHHCHHHHCCCCTEEEEEEEES-----SCCHHHHHHHHHHHTC
T ss_pred             CHHHHHHHHHHhhCCCCCeEEEEEEcCCcCCcceeeeeccccccccccccccccccccc----ccccccccccccccccc
Confidence            789999999999876577899999999999999999999987  888899999997332    34556777778877766


Q ss_pred             hccc--cccchhhhHHHHHHHhCCceEEEEEeCCCCHHHHHHhhcCCCCCCCCcEEEEEeCCchhhhccCC-cceEEecC
Q 039455          109 ERNL--IIWDVHKGINLIRWRLCRKRVLVVLDDVDQLEQLQALAGNHDWFGFGSRIIITTRDEHVLKGHGV-TNIYKVRG  185 (216)
Q Consensus       109 ~~~~--~~~~~~~~~~~l~~~l~~~~~llvlDd~~~~~~~~~l~~~~~~~~~~~~il~tsr~~~~~~~~~~-~~~~~l~~  185 (216)
                      ....  ...+.......+.+.+.++++||||||+++...+..+...+.....+++||+|||+..+...... ...+++++
T Consensus        77 ~~~~~~~~~~~~~~~~~l~~~L~~~~~LlVlDdv~~~~~~~~l~~~~~~~~~~~kilvTTR~~~v~~~~~~~~~~~~l~~  156 (287)
T PF00931_consen   77 PDSSISDPKDIEELQDQLRELLKDKRCLLVLDDVWDEEDLEELREPLPSFSSGSKILVTTRDRSVAGSLGGTDKVIELEP  156 (287)
T ss_dssp             C-STSSCCSSHHHHHHHHHHHHCCTSEEEEEEEE-SHHHH-------HCHHSS-EEEEEESCGGGGTTHHSCEEEEECSS
T ss_pred             cccccccccccccccccchhhhccccceeeeeeecccccccccccccccccccccccccccccccccccccccccccccc
Confidence            5321  34456668888999999999999999999999888877666655678999999999887776543 68899999


Q ss_pred             CChHHHHHHHhhhhcCCC
Q 039455          186 LDYVEALQLFHLKVSKGK  203 (216)
Q Consensus       186 l~~~~~~~ll~~~~~~~~  203 (216)
                      |+.+++++||.+.++...
T Consensus       157 L~~~ea~~L~~~~~~~~~  174 (287)
T PF00931_consen  157 LSEEEALELFKKRAGRKE  174 (287)
T ss_dssp             --HHHHHHHHHHHHTSHS
T ss_pred             cccccccccccccccccc
Confidence            999999999999987654

This domain has been structurally characterised in the human protein apoptotic protease-activating factor 1 (Apaf-1) []. It contains the three-layered alpha-beta fold and subsequent short alpha-helical region characteristic of the AAA+ ATPase domain superfamily. While this domain is thought to bind and hyrolyse ATP, only ADP binding has been experimentally verified. It is proposed that binding and hydrolysis of ATP by this domain induces conformational changes the the overall protein, leading to formation of the apoptosome.; GO: 0043531 ADP binding; PDB: 3IZA_E 1Z6T_D 3SFZ_A 3SHF_A 1VT4_M 3IZ8_G 3LQR_A 2A5Y_C 3LQQ_A.

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]

Probab=99.92  E-value=1.6e-24  Score=191.22  Aligned_cols=182  Identities=29%  Similarity=0.338  Sum_probs=153.3

Q ss_pred             ccchhHHHHHHHHHhcCCCCeeEEEEEecCCCcHHHHHHHHHHH---hcCCCCceEeeccccccccccCchHHHHHHHHH
Q 039455           29 VGIASRMEKMNGYLEAGLDDVRFIGICGMGGIGKTTLAKVLYNT---LKDQFEASSFLANVREVSVTRGLVPLQEQLLSE  105 (216)
Q Consensus        29 vgR~~~~~~l~~~l~~~~~~~~~i~I~G~~GiGKTtL~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  105 (216)
                      ||.+..++.+...|-....  .+++|+||||+|||||++.+.+.   +..+|+.++|+.    .+.......+..+++..
T Consensus       161 VG~e~~~~kl~~~L~~d~~--~iv~i~GMGGvGKTTL~~qi~N~~~~v~~~Fd~~iWV~----VSk~f~~~~iq~~Il~~  234 (889)
T KOG4658|consen  161 VGLETMLEKLWNRLMEDDV--GIVGIYGMGGVGKTTLARQIFNKFDEVGNHFDGVIWVV----VSKEFTTRKIQQTILER  234 (889)
T ss_pred             ccHHHHHHHHHHHhccCCC--CEEEEECCCcccHHHHHHHHhcccchhcccCceEEEEE----EcccccHHhHHHHHHHH
Confidence            9999999999998876433  89999999999999999999984   567899999998    44467788888888887


Q ss_pred             HHhhcc-ccccchhhhHHHHHHHhCCceEEEEEeCCCCHHHHHHhhcCCCCCCCCcEEEEEeCCchhhhc-cCCcceEEe
Q 039455          106 VLMERN-LIIWDVHKGINLIRWRLCRKRVLVVLDDVDQLEQLQALAGNHDWFGFGSRIIITTRDEHVLKG-HGVTNIYKV  183 (216)
Q Consensus       106 ~~~~~~-~~~~~~~~~~~~l~~~l~~~~~llvlDd~~~~~~~~~l~~~~~~~~~~~~il~tsr~~~~~~~-~~~~~~~~l  183 (216)
                      +..... ............+.+.+..++++||+||+|...+|+.+...++...+|++|++|||+.+++.. .+....+++
T Consensus       235 l~~~~~~~~~~~~~~~~~~i~~~L~~krfllvLDDIW~~~dw~~I~~~~p~~~~g~KvvlTTRs~~V~~~~m~~~~~~~v  314 (889)
T KOG4658|consen  235 LGLLDEEWEDKEEDELASKLLNLLEGKRFLLVLDDIWEEVDWDKIGVPFPSRENGSKVVLTTRSEEVCGRAMGVDYPIEV  314 (889)
T ss_pred             hccCCcccchhhHHHHHHHHHHHhccCceEEEEecccccccHHhcCCCCCCccCCeEEEEEeccHhhhhccccCCccccc
Confidence            766332 222233677888999999999999999999999999999999877788999999999999998 667889999


Q ss_pred             cCCChHHHHHHHhhhhcCCC-CCchhHhhhcccC
Q 039455          184 RGLDYVEALQLFHLKVSKGK-QPTDDRVELSKCV  216 (216)
Q Consensus       184 ~~l~~~~~~~ll~~~~~~~~-~~~~~~~~l~~~i  216 (216)
                      +.|+.++||+||.+.++... ..++.+.+++++|
T Consensus       315 ~~L~~~eaW~LF~~~v~~~~~~~~~~i~~lak~v  348 (889)
T KOG4658|consen  315 ECLTPEEAWDLFQKKVGPNTLGSHPDIEELAKEV  348 (889)
T ss_pred             cccCccccHHHHHHhhccccccccccHHHHHHHH
Confidence            99999999999999997764 4545577777653

>PRK00411 cdc6 cell division control protein 6; Reviewed

Probab=99.61  E-value=3.4e-14  Score=117.45  Aligned_cols=173  Identities=17%  Similarity=0.121  Sum_probs=110.7

Q ss_pred             CcccccccchhHHHHHHHHHhcC--CCCeeEEEEEecCCCcHHHHHHHHHHHhcCCCC--ceEeeccccccccccCchHH
Q 039455           23 SAVDGLVGIASRMEKMNGYLEAG--LDDVRFIGICGMGGIGKTTLAKVLYNTLKDQFE--ASSFLANVREVSVTRGLVPL   98 (216)
Q Consensus        23 ~~~~~~vgR~~~~~~l~~~l~~~--~~~~~~i~I~G~~GiGKTtL~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~   98 (216)
                      ..|+.|+||++++++|...+...  +.....+.|+|++|+|||++++.++..+.+..+  ..+++.+. .   ......+
T Consensus        27 ~~P~~l~~Re~e~~~l~~~l~~~~~~~~~~~~lI~G~~GtGKT~l~~~v~~~l~~~~~~~~~v~in~~-~---~~~~~~~  102 (394)
T PRK00411         27 YVPENLPHREEQIEELAFALRPALRGSRPLNVLIYGPPGTGKTTTVKKVFEELEEIAVKVVYVYINCQ-I---DRTRYAI  102 (394)
T ss_pred             CcCCCCCCHHHHHHHHHHHHHHHhCCCCCCeEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEEEECC-c---CCCHHHH
Confidence            45778999999999999988543  334567899999999999999999998765442  23444322 1   2234455


Q ss_pred             HHHHHHHHHhhcc-ccccchhhhHHHHHHHhC--CceEEEEEeCCCCHH------HHHHhhcCCCCC-CCCcEEEEEeCC
Q 039455           99 QEQLLSEVLMERN-LIIWDVHKGINLIRWRLC--RKRVLVVLDDVDQLE------QLQALAGNHDWF-GFGSRIIITTRD  168 (216)
Q Consensus        99 ~~~l~~~~~~~~~-~~~~~~~~~~~~l~~~l~--~~~~llvlDd~~~~~------~~~~l~~~~~~~-~~~~~il~tsr~  168 (216)
                      ...++.++..... ....+.......+.+.+.  +++.+|||||++...      .+..+...+... +.+..+|++++.
T Consensus       103 ~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~viviDE~d~l~~~~~~~~l~~l~~~~~~~~~~~v~vI~i~~~  182 (394)
T PRK00411        103 FSEIARQLFGHPPPSSGLSFDELFDKIAEYLDERDRVLIVALDDINYLFEKEGNDVLYSLLRAHEEYPGARIGVIGISSD  182 (394)
T ss_pred             HHHHHHHhcCCCCCCCCCCHHHHHHHHHHHHHhcCCEEEEEECCHhHhhccCCchHHHHHHHhhhccCCCeEEEEEEECC
Confidence            6666666654211 112234445555666654  356899999998653      344444322211 123446777776


Q ss_pred             chhhhccC-------CcceEEecCCChHHHHHHHhhhh
Q 039455          169 EHVLKGHG-------VTNIYKVRGLDYVEALQLFHLKV  199 (216)
Q Consensus       169 ~~~~~~~~-------~~~~~~l~~l~~~~~~~ll~~~~  199 (216)
                      ..+...+.       ....+.++|++.++..+++...+
T Consensus       183 ~~~~~~l~~~~~s~~~~~~i~f~py~~~e~~~il~~r~  220 (394)
T PRK00411        183 LTFLYILDPRVKSVFRPEEIYFPPYTADEIFDILKDRV  220 (394)
T ss_pred             cchhhhcCHHHHhcCCcceeecCCCCHHHHHHHHHHHH
Confidence            54433221       23578999999999999998765

>TIGR02928 orc1/cdc6 family replication initiation protein

Probab=99.57  E-value=2e-13  Score=111.68  Aligned_cols=174  Identities=16%  Similarity=0.134  Sum_probs=107.8

Q ss_pred             CcccccccchhHHHHHHHHHhcC--CCCeeEEEEEecCCCcHHHHHHHHHHHhcCCCC------ceEeeccccccccccC
Q 039455           23 SAVDGLVGIASRMEKMNGYLEAG--LDDVRFIGICGMGGIGKTTLAKVLYNTLKDQFE------ASSFLANVREVSVTRG   94 (216)
Q Consensus        23 ~~~~~~vgR~~~~~~l~~~l~~~--~~~~~~i~I~G~~GiGKTtL~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~   94 (216)
                      ..|+.++||+++++.|..++...  +.....+.|+||+|+|||++++.+++.+.+...      ..+|+.+..    ...
T Consensus        12 ~~p~~l~gRe~e~~~l~~~l~~~~~~~~~~~i~I~G~~GtGKT~l~~~~~~~l~~~~~~~~~~~~~v~in~~~----~~~   87 (365)
T TIGR02928        12 YVPDRIVHRDEQIEELAKALRPILRGSRPSNVFIYGKTGTGKTAVTKYVMKELEEAAEDRDVRVVTVYVNCQI----LDT   87 (365)
T ss_pred             CCCCCCCCcHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhccCCceEEEEEECCC----CCC
Confidence            45668999999999999988742  334568999999999999999999987653222      234444221    233


Q ss_pred             chHHHHHHHHHHHh-hccc--cccchhhhHHHHHHHhC--CceEEEEEeCCCCHH-----HHHHhhcCC--CCC-CCCcE
Q 039455           95 LVPLQEQLLSEVLM-ERNL--IIWDVHKGINLIRWRLC--RKRVLVVLDDVDQLE-----QLQALAGNH--DWF-GFGSR  161 (216)
Q Consensus        95 ~~~~~~~l~~~~~~-~~~~--~~~~~~~~~~~l~~~l~--~~~~llvlDd~~~~~-----~~~~l~~~~--~~~-~~~~~  161 (216)
                      ...+...++.++.. ....  ...+.......+.+.+.  +++.+||||+++.+.     .+..+....  ... +....
T Consensus        88 ~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlvIDE~d~L~~~~~~~L~~l~~~~~~~~~~~~~v~  167 (365)
T TIGR02928        88 LYQVLVELANQLRGSGEEVPTTGLSTSEVFRRLYKELNERGDSLIIVLDEIDYLVGDDDDLLYQLSRARSNGDLDNAKVG  167 (365)
T ss_pred             HHHHHHHHHHHHhhcCCCCCCCCCCHHHHHHHHHHHHHhcCCeEEEEECchhhhccCCcHHHHhHhccccccCCCCCeEE
Confidence            44566667766642 1111  11123333444444443  467899999998761     133333221  111 13345


Q ss_pred             EEEEeCCchhhhccC-------CcceEEecCCChHHHHHHHhhhhc
Q 039455          162 IIITTRDEHVLKGHG-------VTNIYKVRGLDYVEALQLFHLKVS  200 (216)
Q Consensus       162 il~tsr~~~~~~~~~-------~~~~~~l~~l~~~~~~~ll~~~~~  200 (216)
                      +|++++...+...+.       ....+.++|++.++..+++..++.
T Consensus       168 lI~i~n~~~~~~~l~~~~~s~~~~~~i~f~p~~~~e~~~il~~r~~  213 (365)
T TIGR02928       168 VIGISNDLKFRENLDPRVKSSLCEEEIIFPPYDAEELRDILENRAE  213 (365)
T ss_pred             EEEEECCcchHhhcCHHHhccCCcceeeeCCCCHHHHHHHHHHHHH
Confidence            666776554432221       135789999999999999998763

Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.

>PF05729 NACHT: NACHT domain

Probab=99.55  E-value=9.8e-14  Score=100.79  Aligned_cols=142  Identities=25%  Similarity=0.324  Sum_probs=84.7

Q ss_pred             eEEEEEecCCCcHHHHHHHHHHHhcCCC------CceEeeccccccccccCchHHHHHHHHHHHhhccccccchhhhHHH
Q 039455           50 RFIGICGMGGIGKTTLAKVLYNTLKDQF------EASSFLANVREVSVTRGLVPLQEQLLSEVLMERNLIIWDVHKGINL  123 (216)
Q Consensus        50 ~~i~I~G~~GiGKTtL~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~  123 (216)
                      ++++|+|++|+||||+++.++..+....      ..++|+. .+..........+...+.......    ......   .
T Consensus         1 r~l~I~G~~G~GKStll~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~l~~~~~~~----~~~~~~---~   72 (166)
T PF05729_consen    1 RVLWISGEPGSGKSTLLRKLAQQLAEEEPPPSKFPYPFFFS-LRDISDSNNSRSLADLLFDQLPES----IAPIEE---L   72 (166)
T ss_pred             CEEEEECCCCCChHHHHHHHHHHHHhcCcccccceEEEEEe-ehhhhhccccchHHHHHHHhhccc----hhhhHH---H
Confidence            4789999999999999999998765443      2344443 333222222222323332222111    111111   2


Q ss_pred             HHHH-hCCceEEEEEeCCCCHHH---------HHHhhcCC-C-CCCCCcEEEEEeCCchh---hhccCCcceEEecCCCh
Q 039455          124 IRWR-LCRKRVLVVLDDVDQLEQ---------LQALAGNH-D-WFGFGSRIIITTRDEHV---LKGHGVTNIYKVRGLDY  188 (216)
Q Consensus       124 l~~~-l~~~~~llvlDd~~~~~~---------~~~l~~~~-~-~~~~~~~il~tsr~~~~---~~~~~~~~~~~l~~l~~  188 (216)
                      +... ...++++||||++|+...         +..++..+ . ...+++++++|||....   ...+.....+++.+|++
T Consensus        73 ~~~~~~~~~~~llilDglDE~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~liit~r~~~~~~~~~~~~~~~~~~l~~~~~  152 (166)
T PF05729_consen   73 LQELLEKNKRVLLILDGLDELEEQDQSQERQRLLDLLSQLLPQALPPGVKLIITSRPRAFPDLRRRLKQAQILELEPFSE  152 (166)
T ss_pred             HHHHHHcCCceEEEEechHhcccchhhhHHHHHHHHHHHHhhhccCCCCeEEEEEcCChHHHHHHhcCCCcEEEECCCCH
Confidence            2222 246789999999975532         12222211 1 12468999999998765   33344557899999999


Q ss_pred             HHHHHHHhhhh
Q 039455          189 VEALQLFHLKV  199 (216)
Q Consensus       189 ~~~~~ll~~~~  199 (216)
                      ++..++++++.
T Consensus       153 ~~~~~~~~~~f  163 (166)
T PF05729_consen  153 EDIKQYLRKYF  163 (166)
T ss_pred             HHHHHHHHHHh
Confidence            99999998765

>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP

Probab=99.53  E-value=6.8e-14  Score=107.13  Aligned_cols=168  Identities=21%  Similarity=0.289  Sum_probs=85.3

Q ss_pred             cccchhHHHHHHHHHhcCCCCeeEEEEEecCCCcHHHHHHHHHHHhcCCCCceEeeccccccccccCchHH------HHH
Q 039455           28 LVGIASRMEKMNGYLEAGLDDVRFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLANVREVSVTRGLVPL------QEQ  101 (216)
Q Consensus        28 ~vgR~~~~~~l~~~l~~~~~~~~~i~I~G~~GiGKTtL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~  101 (216)
                      |+||+.+++.|.+++..+  ....++|+||.|+|||+|++.+....++....++|+....... .......      ...
T Consensus         1 F~gR~~el~~l~~~l~~~--~~~~~~l~G~rg~GKTsLl~~~~~~~~~~~~~~~y~~~~~~~~-~~~~~~~~~~~~~~~~   77 (234)
T PF01637_consen    1 FFGREKELEKLKELLESG--PSQHILLYGPRGSGKTSLLKEFINELKEKGYKVVYIDFLEESN-ESSLRSFIEETSLADE   77 (234)
T ss_dssp             S-S-HHHHHHHHHCHHH----SSEEEEEESTTSSHHHHHHHHHHHCT--EECCCHHCCTTBSH-HHHHHHHHHHHHHHCH
T ss_pred             CCCHHHHHHHHHHHHHhh--cCcEEEEEcCCcCCHHHHHHHHHHHhhhcCCcEEEEecccchh-hhHHHHHHHHHHHHHH
Confidence            799999999999998863  3479999999999999999999998755433455554222211 0011111      011


Q ss_pred             HHHHHHhhccc---------cccchhhhHHHHHHHhC--CceEEEEEeCCCCHH-----------HHHHhhcCCCCCCCC
Q 039455          102 LLSEVLMERNL---------IIWDVHKGINLIRWRLC--RKRVLVVLDDVDQLE-----------QLQALAGNHDWFGFG  159 (216)
Q Consensus       102 l~~~~~~~~~~---------~~~~~~~~~~~l~~~l~--~~~~llvlDd~~~~~-----------~~~~l~~~~~~~~~~  159 (216)
                      +...+......         ...........+.+.+.  +++.+|||||++...           .+..+...... ...
T Consensus        78 l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~iiviDe~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~  156 (234)
T PF01637_consen   78 LSEALGISIPSITLEKISKDLSEDSFSALERLLEKLKKKGKKVIIVIDEFQYLAIASEEDKDFLKSLRSLLDSLLS-QQN  156 (234)
T ss_dssp             CHHHHHHHCCTSTTEEEECTS-GG-G--HHHHHHHHHHCHCCEEEEEETGGGGGBCTTTTHHHHHHHHHHHHH-----TT
T ss_pred             HHHHHhhhcccccchhhhhcchhhHHHHHHHHHHHHHhcCCcEEEEEecHHHHhhcccchHHHHHHHHHHHhhccc-cCC
Confidence            11112111100         00111222333333333  235999999996544           22333333221 234


Q ss_pred             cEEEEEeCCchhhhc--------cCCcceEEecCCChHHHHHHHhhhh
Q 039455          160 SRIIITTRDEHVLKG--------HGVTNIYKVRGLDYVEALQLFHLKV  199 (216)
Q Consensus       160 ~~il~tsr~~~~~~~--------~~~~~~~~l~~l~~~~~~~ll~~~~  199 (216)
                      ..+++++....+...        .+....+.++||+.+++++++...+
T Consensus       157 ~~~v~~~S~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~e~~~~~~~~~  204 (234)
T PF01637_consen  157 VSIVITGSSDSLMEEFLDDKSPLFGRFSHIELKPLSKEEAREFLKELF  204 (234)
T ss_dssp             EEEEEEESSHHHHHHTT-TTSTTTT---EEEE----HHHHHHHHHHHH
T ss_pred             ceEEEECCchHHHHHhhcccCccccccceEEEeeCCHHHHHHHHHHHH
Confidence            445555555433332        2344569999999999999999864

; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.

>PRK06893 DNA replication initiation factor; Validated

Probab=99.51  E-value=1.3e-13  Score=105.65  Aligned_cols=136  Identities=18%  Similarity=0.202  Sum_probs=82.7

Q ss_pred             eeEEEEEecCCCcHHHHHHHHHHHhcCCCCceEeeccccccccccCchHHHHHHHHHHHhhccccccchhhhHHHHHHHh
Q 039455           49 VRFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLANVREVSVTRGLVPLQEQLLSEVLMERNLIIWDVHKGINLIRWRL  128 (216)
Q Consensus        49 ~~~i~I~G~~GiGKTtL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l  128 (216)
                      .+.+.|+|++|+|||+|+..+++.+..+...+.|+.....       ......++                      ..+
T Consensus        39 ~~~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~y~~~~~~-------~~~~~~~~----------------------~~~   89 (229)
T PRK06893         39 QPFFYIWGGKSSGKSHLLKAVSNHYLLNQRTAIYIPLSKS-------QYFSPAVL----------------------ENL   89 (229)
T ss_pred             CCeEEEECCCCCCHHHHHHHHHHHHHHcCCCeEEeeHHHh-------hhhhHHHH----------------------hhc
Confidence            4678999999999999999999987655556666652100       00000110                      011


Q ss_pred             CCceEEEEEeCCCCH---HHHH-HhhcCCCCC-CCCcEEE-EEeCC---------chhhhccCCcceEEecCCChHHHHH
Q 039455          129 CRKRVLVVLDDVDQL---EQLQ-ALAGNHDWF-GFGSRII-ITTRD---------EHVLKGHGVTNIYKVRGLDYVEALQ  193 (216)
Q Consensus       129 ~~~~~llvlDd~~~~---~~~~-~l~~~~~~~-~~~~~il-~tsr~---------~~~~~~~~~~~~~~l~~l~~~~~~~  193 (216)
                       .+.-+|+|||++..   ..+. .+...+... ..+..++ +|++.         +.+.+++.....+++++++.++.++
T Consensus        90 -~~~dlLilDDi~~~~~~~~~~~~l~~l~n~~~~~~~~illits~~~p~~l~~~~~~L~sRl~~g~~~~l~~pd~e~~~~  168 (229)
T PRK06893         90 -EQQDLVCLDDLQAVIGNEEWELAIFDLFNRIKEQGKTLLLISADCSPHALSIKLPDLASRLTWGEIYQLNDLTDEQKII  168 (229)
T ss_pred             -ccCCEEEEeChhhhcCChHHHHHHHHHHHHHHHcCCcEEEEeCCCChHHccccchhHHHHHhcCCeeeCCCCCHHHHHH
Confidence             12349999999764   2232 222222211 2345554 44543         2445555566789999999999999


Q ss_pred             HHhhhhcCCC--CCchhHhhhcc
Q 039455          194 LFHLKVSKGK--QPTDDRVELSK  214 (216)
Q Consensus       194 ll~~~~~~~~--~~~~~~~~l~~  214 (216)
                      +|++.+...+  .+++..+.|++
T Consensus       169 iL~~~a~~~~l~l~~~v~~~L~~  191 (229)
T PRK06893        169 VLQRNAYQRGIELSDEVANFLLK  191 (229)
T ss_pred             HHHHHHHHcCCCCCHHHHHHHHH
Confidence            9998886544  45555555544

>PRK08727 hypothetical protein; Validated

Probab=99.40  E-value=9.3e-12  Score=95.61  Aligned_cols=156  Identities=17%  Similarity=0.176  Sum_probs=90.7

Q ss_pred             ccccchhHHHHHHHHHhcCCCCeeEEEEEecCCCcHHHHHHHHHHHhcCCCCceEeeccccccccccCchHHHHHHHHHH
Q 039455           27 GLVGIASRMEKMNGYLEAGLDDVRFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLANVREVSVTRGLVPLQEQLLSEV  106 (216)
Q Consensus        27 ~~vgR~~~~~~l~~~l~~~~~~~~~i~I~G~~GiGKTtL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~  106 (216)
                      +++|-+..+..+......  .....++|+|++|+|||+|+..+++...+....+.|+.. ..      ........+   
T Consensus        21 f~~~~~n~~~~~~~~~~~--~~~~~l~l~G~~G~GKThL~~a~~~~~~~~~~~~~y~~~-~~------~~~~~~~~~---   88 (233)
T PRK08727         21 YIAAPDGLLAQLQALAAG--QSSDWLYLSGPAGTGKTHLALALCAAAEQAGRSSAYLPL-QA------AAGRLRDAL---   88 (233)
T ss_pred             ccCCcHHHHHHHHHHHhc--cCCCeEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEeH-HH------hhhhHHHHH---
Confidence            334444444444444332  233569999999999999999999887666555666641 11      000000111   


Q ss_pred             HhhccccccchhhhHHHHHHHhCCceEEEEEeCCCCH---HHHH-HhhcCCCCC-CCCcEEEEEeCCc---------hhh
Q 039455          107 LMERNLIIWDVHKGINLIRWRLCRKRVLVVLDDVDQL---EQLQ-ALAGNHDWF-GFGSRIIITTRDE---------HVL  172 (216)
Q Consensus       107 ~~~~~~~~~~~~~~~~~l~~~l~~~~~llvlDd~~~~---~~~~-~l~~~~~~~-~~~~~il~tsr~~---------~~~  172 (216)
                                     ..+     .+.-+|||||++..   ..+. .+...+... .++..+|+|++..         .+.
T Consensus        89 ---------------~~l-----~~~dlLiIDDi~~l~~~~~~~~~lf~l~n~~~~~~~~vI~ts~~~p~~l~~~~~dL~  148 (233)
T PRK08727         89 ---------------EAL-----EGRSLVALDGLESIAGQREDEVALFDFHNRARAAGITLLYTARQMPDGLALVLPDLR  148 (233)
T ss_pred             ---------------HHH-----hcCCEEEEeCcccccCChHHHHHHHHHHHHHHHcCCeEEEECCCChhhhhhhhHHHH
Confidence                           111     12238999999743   1221 222222111 2456799999853         233


Q ss_pred             hccCCcceEEecCCChHHHHHHHhhhhcCCC--CCchhHhhhcc
Q 039455          173 KGHGVTNIYKVRGLDYVEALQLFHLKVSKGK--QPTDDRVELSK  214 (216)
Q Consensus       173 ~~~~~~~~~~l~~l~~~~~~~ll~~~~~~~~--~~~~~~~~l~~  214 (216)
                      +++.....+++++++.++..+++++.+...+  .+++.+..|++
T Consensus       149 SRl~~~~~~~l~~~~~e~~~~iL~~~a~~~~l~l~~e~~~~La~  192 (233)
T PRK08727        149 SRLAQCIRIGLPVLDDVARAAVLRERAQRRGLALDEAAIDWLLT  192 (233)
T ss_pred             HHHhcCceEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Confidence            4444567899999999999999998664333  45555555543

>PRK05642 DNA replication initiation factor; Validated

Probab=99.37  E-value=1.1e-11  Score=95.29  Aligned_cols=135  Identities=20%  Similarity=0.296  Sum_probs=81.0

Q ss_pred             eEEEEEecCCCcHHHHHHHHHHHhcCCCCceEeeccccccccccCchHHHHHHHHHHHhhccccccchhhhHHHHHHHhC
Q 039455           50 RFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLANVREVSVTRGLVPLQEQLLSEVLMERNLIIWDVHKGINLIRWRLC  129 (216)
Q Consensus        50 ~~i~I~G~~GiGKTtL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~  129 (216)
                      ..+.|+|++|+|||+|++.+++.+.+....+.|++. ..             +...           .    ..+.+.+.
T Consensus        46 ~~l~l~G~~G~GKTHLl~a~~~~~~~~~~~v~y~~~-~~-------------~~~~-----------~----~~~~~~~~   96 (234)
T PRK05642         46 SLIYLWGKDGVGRSHLLQAACLRFEQRGEPAVYLPL-AE-------------LLDR-----------G----PELLDNLE   96 (234)
T ss_pred             CeEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEeeH-HH-------------HHhh-----------h----HHHHHhhh
Confidence            678999999999999999999876654455666641 11             1110           0    01111122


Q ss_pred             CceEEEEEeCCCCH---HHHH-HhhcCCCCC-CCCcEEEEEeCCc---------hhhhccCCcceEEecCCChHHHHHHH
Q 039455          130 RKRVLVVLDDVDQL---EQLQ-ALAGNHDWF-GFGSRIIITTRDE---------HVLKGHGVTNIYKVRGLDYVEALQLF  195 (216)
Q Consensus       130 ~~~~llvlDd~~~~---~~~~-~l~~~~~~~-~~~~~il~tsr~~---------~~~~~~~~~~~~~l~~l~~~~~~~ll  195 (216)
                      +- -+|++||++..   ..+. .+...++.. ..+..+|+|++..         .+.+++.....+++++++.++..+++
T Consensus        97 ~~-d~LiiDDi~~~~~~~~~~~~Lf~l~n~~~~~g~~ilits~~~p~~l~~~~~~L~SRl~~gl~~~l~~~~~e~~~~il  175 (234)
T PRK05642         97 QY-ELVCLDDLDVIAGKADWEEALFHLFNRLRDSGRRLLLAASKSPRELPIKLPDLKSRLTLALVFQMRGLSDEDKLRAL  175 (234)
T ss_pred             hC-CEEEEechhhhcCChHHHHHHHHHHHHHHhcCCEEEEeCCCCHHHcCccCccHHHHHhcCeeeecCCCCHHHHHHHH
Confidence            21 27889999633   2222 233222211 3467788888743         22334445688999999999999999


Q ss_pred             hhhhcCCC--CCchhHhhhcc
Q 039455          196 HLKVSKGK--QPTDDRVELSK  214 (216)
Q Consensus       196 ~~~~~~~~--~~~~~~~~l~~  214 (216)
                      +.++...+  .+++..+.|++
T Consensus       176 ~~ka~~~~~~l~~ev~~~L~~  196 (234)
T PRK05642        176 QLRASRRGLHLTDEVGHFILT  196 (234)
T ss_pred             HHHHHHcCCCCCHHHHHHHHH
Confidence            96553332  44555555544

>PTZ00112 origin recognition complex 1 protein; Provisional

Probab=99.36  E-value=2.5e-11  Score=105.81  Aligned_cols=188  Identities=12%  Similarity=0.092  Sum_probs=107.6

Q ss_pred             CcccccccchhHHHHHHHHHhcC---CCCeeEEEEEecCCCcHHHHHHHHHHHhcCC-----CC--ceEeeccccccccc
Q 039455           23 SAVDGLVGIASRMEKMNGYLEAG---LDDVRFIGICGMGGIGKTTLAKVLYNTLKDQ-----FE--ASSFLANVREVSVT   92 (216)
Q Consensus        23 ~~~~~~vgR~~~~~~l~~~l~~~---~~~~~~i~I~G~~GiGKTtL~~~~~~~~~~~-----~~--~~~~~~~~~~~~~~   92 (216)
                      ..|+.+.||++|+++|..+|...   .....++.|+|++|+|||++++.+..++...     .+  .++++.+..    .
T Consensus       752 YVPD~LPhREeEIeeLasfL~paIkgsgpnnvLYIyG~PGTGKTATVK~VLrELqeeaeqk~lp~f~vVYINCm~----L  827 (1164)
T PTZ00112        752 VVPKYLPCREKEIKEVHGFLESGIKQSGSNQILYISGMPGTGKTATVYSVIQLLQHKTKQKLLPSFNVFEINGMN----V  827 (1164)
T ss_pred             cCCCcCCChHHHHHHHHHHHHHHHhcCCCCceEEEECCCCCCHHHHHHHHHHHHHHHHhhccCCCceEEEEeCCc----c
Confidence            45678999999999999987642   2223567899999999999999999876432     12  234444222    2


Q ss_pred             cCchHHHHHHHHHHHhhccccccchhhhHHHHHHHh-C--CceEEEEEeCCCCHH-----HHHHhhcCCCCCCCCcEEEE
Q 039455           93 RGLVPLQEQLLSEVLMERNLIIWDVHKGINLIRWRL-C--RKRVLVVLDDVDQLE-----QLQALAGNHDWFGFGSRIII  164 (216)
Q Consensus        93 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l-~--~~~~llvlDd~~~~~-----~~~~l~~~~~~~~~~~~il~  164 (216)
                      .........+..++....+............+...+ .  ....+|||||++.+.     .+..++...........+|.
T Consensus       828 stp~sIYqvI~qqL~g~~P~~GlsS~evLerLF~~L~k~~r~v~IIILDEID~L~kK~QDVLYnLFR~~~~s~SKLiLIG  907 (1164)
T PTZ00112        828 VHPNAAYQVLYKQLFNKKPPNALNSFKILDRLFNQNKKDNRNVSILIIDEIDYLITKTQKVLFTLFDWPTKINSKLVLIA  907 (1164)
T ss_pred             CCHHHHHHHHHHHHcCCCCCccccHHHHHHHHHhhhhcccccceEEEeehHhhhCccHHHHHHHHHHHhhccCCeEEEEE
Confidence            344455566666664433222222223333333333 2  224689999998552     23223322211122233444


Q ss_pred             EeCCchhhhcc----C---CcceEEecCCChHHHHHHHhhhhcCC-C-CCchhHhhhcc
Q 039455          165 TTRDEHVLKGH----G---VTNIYKVRGLDYVEALQLFHLKVSKG-K-QPTDDRVELSK  214 (216)
Q Consensus       165 tsr~~~~~~~~----~---~~~~~~l~~l~~~~~~~ll~~~~~~~-~-~~~~~~~~l~~  214 (216)
                      ++.+.++...+    .   ....+.++|++.+|..++|..++... + .+++.++.+|+
T Consensus       908 ISNdlDLperLdPRLRSRLg~eeIvF~PYTaEQL~dILk~RAe~A~gVLdDdAIELIAr  966 (1164)
T PTZ00112        908 ISNTMDLPERLIPRCRSRLAFGRLVFSPYKGDEIEKIIKERLENCKEIIDHTAIQLCAR  966 (1164)
T ss_pred             ecCchhcchhhhhhhhhccccccccCCCCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Confidence            55543332221    1   23447789999999999999887532 2 34455555544

>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication

Probab=99.34  E-value=1.3e-11  Score=93.81  Aligned_cols=165  Identities=17%  Similarity=0.200  Sum_probs=91.0

Q ss_pred             ccccchhHHH-HH-HHHHhcCCCCeeEEEEEecCCCcHHHHHHHHHHHhcCCCC--ceEeeccccccccccCchHHHHHH
Q 039455           27 GLVGIASRME-KM-NGYLEAGLDDVRFIGICGMGGIGKTTLAKVLYNTLKDQFE--ASSFLANVREVSVTRGLVPLQEQL  102 (216)
Q Consensus        27 ~~vgR~~~~~-~l-~~~l~~~~~~~~~i~I~G~~GiGKTtL~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~l  102 (216)
                      +++|...+.. .. ......+......+.|+|++|+|||+|++++++.+.+..+  .+.|+.          ...+...+
T Consensus        10 fv~g~~N~~a~~~~~~ia~~~~~~~~~l~l~G~~G~GKTHLL~Ai~~~~~~~~~~~~v~y~~----------~~~f~~~~   79 (219)
T PF00308_consen   10 FVVGESNELAYAAAKAIAENPGERYNPLFLYGPSGLGKTHLLQAIANEAQKQHPGKRVVYLS----------AEEFIREF   79 (219)
T ss_dssp             S--TTTTHHHHHHHHHHHHSTTTSSSEEEEEESTTSSHHHHHHHHHHHHHHHCTTS-EEEEE----------HHHHHHHH
T ss_pred             CCcCCcHHHHHHHHHHHHhcCCCCCCceEEECCCCCCHHHHHHHHHHHHHhccccccceeec----------HHHHHHHH
Confidence            3457644433 33 3333444444567899999999999999999998765433  344443          12233333


Q ss_pred             HHHHHhhccccccchhhhHHHHHHHhCCceEEEEEeCCCCH---H----HHHHhhcCCCCCCCCcEEEEEeCCc------
Q 039455          103 LSEVLMERNLIIWDVHKGINLIRWRLCRKRVLVVLDDVDQL---E----QLQALAGNHDWFGFGSRIIITTRDE------  169 (216)
Q Consensus       103 ~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~llvlDd~~~~---~----~~~~l~~~~~~~~~~~~il~tsr~~------  169 (216)
                      ...+...          ....+...+. .--+|+|||++..   .    .+..+...+.  ..+..+|+|++..      
T Consensus        80 ~~~~~~~----------~~~~~~~~~~-~~DlL~iDDi~~l~~~~~~q~~lf~l~n~~~--~~~k~li~ts~~~P~~l~~  146 (219)
T PF00308_consen   80 ADALRDG----------EIEEFKDRLR-SADLLIIDDIQFLAGKQRTQEELFHLFNRLI--ESGKQLILTSDRPPSELSG  146 (219)
T ss_dssp             HHHHHTT----------SHHHHHHHHC-TSSEEEEETGGGGTTHHHHHHHHHHHHHHHH--HTTSEEEEEESS-TTTTTT
T ss_pred             HHHHHcc----------cchhhhhhhh-cCCEEEEecchhhcCchHHHHHHHHHHHHHH--hhCCeEEEEeCCCCccccc
Confidence            3332221          1122223333 2338999999754   2    2233333322  3567899999643      


Q ss_pred             ---hhhhccCCcceEEecCCChHHHHHHHhhhhcCCC--CCchhHhhhcc
Q 039455          170 ---HVLKGHGVTNIYKVRGLDYVEALQLFHLKVSKGK--QPTDDRVELSK  214 (216)
Q Consensus       170 ---~~~~~~~~~~~~~l~~l~~~~~~~ll~~~~~~~~--~~~~~~~~l~~  214 (216)
                         .+.+++...-.+++++++.++..+++++.+...+  .+++....|++
T Consensus       147 ~~~~L~SRl~~Gl~~~l~~pd~~~r~~il~~~a~~~~~~l~~~v~~~l~~  196 (219)
T PF00308_consen  147 LLPDLRSRLSWGLVVELQPPDDEDRRRILQKKAKERGIELPEEVIEYLAR  196 (219)
T ss_dssp             S-HHHHHHHHCSEEEEE----HHHHHHHHHHHHHHTT--S-HHHHHHHHH
T ss_pred             cChhhhhhHhhcchhhcCCCCHHHHHHHHHHHHHHhCCCCcHHHHHHHHH
Confidence               2344445677899999999999999998874444  44455554443

DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.

>PRK08084 DNA replication initiation factor; Provisional

Probab=99.33  E-value=2.1e-11  Score=93.79  Aligned_cols=156  Identities=18%  Similarity=0.162  Sum_probs=90.0

Q ss_pred             cccccchh-HHHHHHHHHhcCCCCeeEEEEEecCCCcHHHHHHHHHHHhcCCCCceEeeccccccccccCchHHHHHHHH
Q 039455           26 DGLVGIAS-RMEKMNGYLEAGLDDVRFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLANVREVSVTRGLVPLQEQLLS  104 (216)
Q Consensus        26 ~~~vgR~~-~~~~l~~~l~~~~~~~~~i~I~G~~GiGKTtL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  104 (216)
                      .+++|.+. .+..+.++....  ....+.|+||+|+|||+|+..+++........+.|+.. ..      .......   
T Consensus        23 ~f~~~~n~~a~~~l~~~~~~~--~~~~l~l~Gp~G~GKThLl~a~~~~~~~~~~~v~y~~~-~~------~~~~~~~---   90 (235)
T PRK08084         23 SFYPGDNDSLLAALQNALRQE--HSGYIYLWSREGAGRSHLLHAACAELSQRGRAVGYVPL-DK------RAWFVPE---   90 (235)
T ss_pred             ccccCccHHHHHHHHHHHhCC--CCCeEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEEH-HH------HhhhhHH---
Confidence            34446433 334455554432  34689999999999999999999876654444555541 11      0000000   


Q ss_pred             HHHhhccccccchhhhHHHHHHHhCCceEEEEEeCCCCH---HHH----HHhhcCCCCCCCCcEEEEEeCCc--------
Q 039455          105 EVLMERNLIIWDVHKGINLIRWRLCRKRVLVVLDDVDQL---EQL----QALAGNHDWFGFGSRIIITTRDE--------  169 (216)
Q Consensus       105 ~~~~~~~~~~~~~~~~~~~l~~~l~~~~~llvlDd~~~~---~~~----~~l~~~~~~~~~~~~il~tsr~~--------  169 (216)
                                     ..+.+.+     --+|+|||++..   ..+    .+++..... ..+..+|+||+.+        
T Consensus        91 ---------------~~~~~~~-----~dlliiDdi~~~~~~~~~~~~lf~l~n~~~e-~g~~~li~ts~~~p~~l~~~~  149 (235)
T PRK08084         91 ---------------VLEGMEQ-----LSLVCIDNIECIAGDELWEMAIFDLYNRILE-SGRTRLLITGDRPPRQLNLGL  149 (235)
T ss_pred             ---------------HHHHhhh-----CCEEEEeChhhhcCCHHHHHHHHHHHHHHHH-cCCCeEEEeCCCChHHcCccc
Confidence                           1111111     138999999654   222    222222210 1234788888754        


Q ss_pred             -hhhhccCCcceEEecCCChHHHHHHHhhhhcCCC--CCchhHhhhcc
Q 039455          170 -HVLKGHGVTNIYKVRGLDYVEALQLFHLKVSKGK--QPTDDRVELSK  214 (216)
Q Consensus       170 -~~~~~~~~~~~~~l~~l~~~~~~~ll~~~~~~~~--~~~~~~~~l~~  214 (216)
                       .+.+++.....++++++++++..+++++.+...+  .+++.++.|++
T Consensus       150 ~~L~SRl~~g~~~~l~~~~~~~~~~~l~~~a~~~~~~l~~~v~~~L~~  197 (235)
T PRK08084        150 PDLASRLDWGQIYKLQPLSDEEKLQALQLRARLRGFELPEDVGRFLLK  197 (235)
T ss_pred             HHHHHHHhCCceeeecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Confidence             3344555668999999999999999988654333  44555555543

>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]

Probab=99.33  E-value=9.9e-11  Score=95.13  Aligned_cols=181  Identities=18%  Similarity=0.152  Sum_probs=115.9

Q ss_pred             CCcccccccchhHHHHHHHHHhcC--CCCeeEEEEEecCCCcHHHHHHHHHHHhcCCCCce--EeeccccccccccCchH
Q 039455           22 PSAVDGLVGIASRMEKMNGYLEAG--LDDVRFIGICGMGGIGKTTLAKVLYNTLKDQFEAS--SFLANVREVSVTRGLVP   97 (216)
Q Consensus        22 ~~~~~~~vgR~~~~~~l~~~l~~~--~~~~~~i~I~G~~GiGKTtL~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~   97 (216)
                      ...|+.+.+|+.+++++...|...  +..+..+.|+|++|+|||++++.+..++++..+..  .++. +..   ......
T Consensus        13 ~~iP~~l~~Re~ei~~l~~~l~~~~~~~~p~n~~iyG~~GTGKT~~~~~v~~~l~~~~~~~~~~yIN-c~~---~~t~~~   88 (366)
T COG1474          13 DYIPEELPHREEEINQLASFLAPALRGERPSNIIIYGPTGTGKTATVKFVMEELEESSANVEVVYIN-CLE---LRTPYQ   88 (366)
T ss_pred             CCCcccccccHHHHHHHHHHHHHHhcCCCCccEEEECCCCCCHhHHHHHHHHHHHhhhccCceEEEe-eee---CCCHHH
Confidence            345667999999999999887632  33344599999999999999999999888765543  5554 332   456667


Q ss_pred             HHHHHHHHHHhhccccccchhhhHHHHHHHhC--CceEEEEEeCCCCHHH-----HHHhhcCCCCCCCCcEEEEEeCCch
Q 039455           98 LQEQLLSEVLMERNLIIWDVHKGINLIRWRLC--RKRVLVVLDDVDQLEQ-----LQALAGNHDWFGFGSRIIITTRDEH  170 (216)
Q Consensus        98 ~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~--~~~~llvlDd~~~~~~-----~~~l~~~~~~~~~~~~il~tsr~~~  170 (216)
                      +...+++.+... +..........+.+.+.+.  ++..++|||+++.+..     +-.+.........+..++..+.+..
T Consensus        89 i~~~i~~~~~~~-p~~g~~~~~~~~~l~~~~~~~~~~~IvvLDEid~L~~~~~~~LY~L~r~~~~~~~~v~vi~i~n~~~  167 (366)
T COG1474          89 VLSKILNKLGKV-PLTGDSSLEILKRLYDNLSKKGKTVIVILDEVDALVDKDGEVLYSLLRAPGENKVKVSIIAVSNDDK  167 (366)
T ss_pred             HHHHHHHHcCCC-CCCCCchHHHHHHHHHHHHhcCCeEEEEEcchhhhccccchHHHHHHhhccccceeEEEEEEeccHH
Confidence            777777776522 1222344455556666665  4688999999976522     2233322221112234555666554


Q ss_pred             hhhccC-------CcceEEecCCChHHHHHHHhhhh---cCCCCCch
Q 039455          171 VLKGHG-------VTNIYKVRGLDYVEALQLFHLKV---SKGKQPTD  207 (216)
Q Consensus       171 ~~~~~~-------~~~~~~l~~l~~~~~~~ll~~~~---~~~~~~~~  207 (216)
                      +...+.       ....+.++|-+.+|..+++..++   |..+..++
T Consensus       168 ~~~~ld~rv~s~l~~~~I~F~pY~a~el~~Il~~R~~~~~~~~~~~~  214 (366)
T COG1474         168 FLDYLDPRVKSSLGPSEIVFPPYTAEELYDILRERVEEGFSAGVIDD  214 (366)
T ss_pred             HHHHhhhhhhhccCcceeeeCCCCHHHHHHHHHHHHHhhccCCCcCc
Confidence            433221       23448999999999999998765   44443333

>PRK12402 replication factor C small subunit 2; Reviewed

Probab=99.30  E-value=5.3e-11  Score=96.35  Aligned_cols=190  Identities=13%  Similarity=0.107  Sum_probs=98.5

Q ss_pred             CCcccccccchhHHHHHHHHHhcCCCCeeEEEEEecCCCcHHHHHHHHHHHhcCCC--CceEeeccccccccccCchHHH
Q 039455           22 PSAVDGLVGIASRMEKMNGYLEAGLDDVRFIGICGMGGIGKTTLAKVLYNTLKDQF--EASSFLANVREVSVTRGLVPLQ   99 (216)
Q Consensus        22 ~~~~~~~vgR~~~~~~l~~~l~~~~~~~~~i~I~G~~GiGKTtL~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~   99 (216)
                      |..-..++|++..++.|..++..+  ..+.+.++||+|+||||+|+.++..+....  ....++.+..............
T Consensus        11 P~~~~~~~g~~~~~~~L~~~~~~~--~~~~lll~Gp~GtGKT~la~~~~~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~   88 (337)
T PRK12402         11 PALLEDILGQDEVVERLSRAVDSP--NLPHLLVQGPPGSGKTAAVRALARELYGDPWENNFTEFNVADFFDQGKKYLVED   88 (337)
T ss_pred             CCcHHHhcCCHHHHHHHHHHHhCC--CCceEEEECCCCCCHHHHHHHHHHHhcCcccccceEEechhhhhhcchhhhhcC
Confidence            344567899999999999988753  335789999999999999999998765432  1123332111000000000000


Q ss_pred             HHHHHHHHhhccccccchhhhHH---HHHHHh--CCceEEEEEeCCCCHH--HHHHhhcCCCCCCCCcEEEEEeCCch-h
Q 039455          100 EQLLSEVLMERNLIIWDVHKGIN---LIRWRL--CRKRVLVVLDDVDQLE--QLQALAGNHDWFGFGSRIIITTRDEH-V  171 (216)
Q Consensus       100 ~~l~~~~~~~~~~~~~~~~~~~~---~l~~~l--~~~~~llvlDd~~~~~--~~~~l~~~~~~~~~~~~il~tsr~~~-~  171 (216)
                      ..+...+................   ......  ...+-+|||||++...  ....+...+......+.+|+|+..+. +
T Consensus        89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlilDe~~~l~~~~~~~L~~~le~~~~~~~~Il~~~~~~~~  168 (337)
T PRK12402         89 PRFAHFLGTDKRIRSSKIDNFKHVLKEYASYRPLSADYKTILLDNAEALREDAQQALRRIMEQYSRTCRFIIATRQPSKL  168 (337)
T ss_pred             cchhhhhhhhhhhccchHHHHHHHHHHHHhcCCCCCCCcEEEEeCcccCCHHHHHHHHHHHHhccCCCeEEEEeCChhhC
Confidence            00000000000000000111111   111111  1334589999997652  22223322222234566777775432 2


Q ss_pred             hhcc-CCcceEEecCCChHHHHHHHhhhhcCCC--CCchhHhhhc
Q 039455          172 LKGH-GVTNIYKVRGLDYVEALQLFHLKVSKGK--QPTDDRVELS  213 (216)
Q Consensus       172 ~~~~-~~~~~~~l~~l~~~~~~~ll~~~~~~~~--~~~~~~~~l~  213 (216)
                      ...+ .....+++.|++.++..+++.+.+...+  .+++.++.|+
T Consensus       169 ~~~L~sr~~~v~~~~~~~~~~~~~l~~~~~~~~~~~~~~al~~l~  213 (337)
T PRK12402        169 IPPIRSRCLPLFFRAPTDDELVDVLESIAEAEGVDYDDDGLELIA  213 (337)
T ss_pred             chhhcCCceEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHH
Confidence            2222 2346799999999999999988764433  3445555544

>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]

Probab=99.30  E-value=3.2e-11  Score=96.43  Aligned_cols=146  Identities=25%  Similarity=0.395  Sum_probs=90.7

Q ss_pred             CCcccccccchhHHH---HHHHHHhcCCCCeeEEEEEecCCCcHHHHHHHHHHHhcCCCCceEeeccccccccccCchHH
Q 039455           22 PSAVDGLVGIASRME---KMNGYLEAGLDDVRFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLANVREVSVTRGLVPL   98 (216)
Q Consensus        22 ~~~~~~~vgR~~~~~---~l~~~l~~~~~~~~~i~I~G~~GiGKTtL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   98 (216)
                      |...++++|.+.-+.   -|.+.+..  ......++|||+|+||||||+.+++.....|...--+.        .+..++
T Consensus        20 P~~lde~vGQ~HLlg~~~~lrr~v~~--~~l~SmIl~GPPG~GKTTlA~liA~~~~~~f~~~sAv~--------~gvkdl   89 (436)
T COG2256          20 PKSLDEVVGQEHLLGEGKPLRRAVEA--GHLHSMILWGPPGTGKTTLARLIAGTTNAAFEALSAVT--------SGVKDL   89 (436)
T ss_pred             CCCHHHhcChHhhhCCCchHHHHHhc--CCCceeEEECCCCCCHHHHHHHHHHhhCCceEEecccc--------ccHHHH
Confidence            445667788777663   34555554  34578899999999999999999997665542211110        111111


Q ss_pred             HHHHHHHHHhhccccccchhhhHHHH-HHHhCCceEEEEEeCCCCH--HHHHHhhcCCCCCCCCcEEEE--EeCCchhhh
Q 039455           99 QEQLLSEVLMERNLIIWDVHKGINLI-RWRLCRKRVLVVLDDVDQL--EQLQALAGNHDWFGFGSRIII--TTRDEHVLK  173 (216)
Q Consensus        99 ~~~l~~~~~~~~~~~~~~~~~~~~~l-~~~l~~~~~llvlDd~~~~--~~~~~l~~~~~~~~~~~~il~--tsr~~~~~~  173 (216)
                       +.++                  +.- .....+++.+|++|++...  .+-+.+++...   .|.-++|  ||-++.+.-
T Consensus        90 -r~i~------------------e~a~~~~~~gr~tiLflDEIHRfnK~QQD~lLp~vE---~G~iilIGATTENPsF~l  147 (436)
T COG2256          90 -REII------------------EEARKNRLLGRRTILFLDEIHRFNKAQQDALLPHVE---NGTIILIGATTENPSFEL  147 (436)
T ss_pred             -HHHH------------------HHHHHHHhcCCceEEEEehhhhcChhhhhhhhhhhc---CCeEEEEeccCCCCCeee
Confidence             1111                  111 1223377899999999754  34455555543   4544443  666665522


Q ss_pred             c---cCCcceEEecCCChHHHHHHHhhhh
Q 039455          174 G---HGVTNIYKVRGLDYVEALQLFHLKV  199 (216)
Q Consensus       174 ~---~~~~~~~~l~~l~~~~~~~ll~~~~  199 (216)
                      +   +....+++++||+.++..+++.+..
T Consensus       148 n~ALlSR~~vf~lk~L~~~di~~~l~ra~  176 (436)
T COG2256         148 NPALLSRARVFELKPLSSEDIKKLLKRAL  176 (436)
T ss_pred             cHHHhhhhheeeeecCCHHHHHHHHHHHH
Confidence            2   2345899999999999999998833

>TIGR01242 26Sp45 26S proteasome subunit P45 family

Probab=99.29  E-value=4.2e-11  Score=97.98  Aligned_cols=168  Identities=17%  Similarity=0.236  Sum_probs=97.9

Q ss_pred             CcccccccchhHHHHHHHHHhcC-----------CCCeeEEEEEecCCCcHHHHHHHHHHHhcCCCCceEeecccccccc
Q 039455           23 SAVDGLVGIASRMEKMNGYLEAG-----------LDDVRFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLANVREVSV   91 (216)
Q Consensus        23 ~~~~~~vgR~~~~~~l~~~l~~~-----------~~~~~~i~I~G~~GiGKTtL~~~~~~~~~~~~~~~~~~~~~~~~~~   91 (216)
                      .....+.|+++++++|...+...           -.....++|+||+|+|||++|+.+++.....|..+  .   .    
T Consensus       119 ~~~~di~Gl~~~~~~l~~~i~~~~~~~~~~~~~g~~~p~gvLL~GppGtGKT~lakaia~~l~~~~~~v--~---~----  189 (364)
T TIGR01242       119 VSYEDIGGLEEQIREIREAVELPLKHPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHETNATFIRV--V---G----  189 (364)
T ss_pred             CCHHHhCChHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhCCCCEEec--c---h----
Confidence            34567899999999998876421           12245799999999999999999998765432111  0   0    


Q ss_pred             ccCchHHHHHHHHHHHhhccccccchhhhHHHHHHHhCCceEEEEEeCCCCH----------------HHHHHhhcCCCC
Q 039455           92 TRGLVPLQEQLLSEVLMERNLIIWDVHKGINLIRWRLCRKRVLVVLDDVDQL----------------EQLQALAGNHDW  155 (216)
Q Consensus        92 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~llvlDd~~~~----------------~~~~~l~~~~~~  155 (216)
                              ..+.....+.      ........+...-...+.+|+|||++..                ..+..++..+..
T Consensus       190 --------~~l~~~~~g~------~~~~i~~~f~~a~~~~p~il~iDEiD~l~~~~~~~~~~~~~~~~~~l~~ll~~ld~  255 (364)
T TIGR01242       190 --------SELVRKYIGE------GARLVREIFELAKEKAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAELDG  255 (364)
T ss_pred             --------HHHHHHhhhH------HHHHHHHHHHHHHhcCCcEEEhhhhhhhccccccCCCCccHHHHHHHHHHHHHhhC
Confidence                    0111110000      0011112222223356789999998754                112333322211


Q ss_pred             --CCCCcEEEEEeCCchhhhc-----cCCcceEEecCCChHHHHHHHhhhhcCCCCCc-hhHhhhc
Q 039455          156 --FGFGSRIIITTRDEHVLKG-----HGVTNIYKVRGLDYVEALQLFHLKVSKGKQPT-DDRVELS  213 (216)
Q Consensus       156 --~~~~~~il~tsr~~~~~~~-----~~~~~~~~l~~l~~~~~~~ll~~~~~~~~~~~-~~~~~l~  213 (216)
                        ...+..+|.||+.......     ...+..+.+++.+.++..++|+.+......+. -.+.+++
T Consensus       256 ~~~~~~v~vI~ttn~~~~ld~al~r~grfd~~i~v~~P~~~~r~~Il~~~~~~~~l~~~~~~~~la  321 (364)
T TIGR01242       256 FDPRGNVKVIAATNRPDILDPALLRPGRFDRIIEVPLPDFEGRLEILKIHTRKMKLAEDVDLEAIA  321 (364)
T ss_pred             CCCCCCEEEEEecCChhhCChhhcCcccCceEEEeCCcCHHHHHHHHHHHHhcCCCCccCCHHHHH
Confidence              1235677888875533221     12356899999999999999998775544222 2444444

Many proteins may score above the trusted cutoff because an internal

>PRK07003 DNA polymerase III subunits gamma and tau; Validated

Probab=99.28  E-value=8.7e-11  Score=101.59  Aligned_cols=182  Identities=13%  Similarity=0.116  Sum_probs=103.7

Q ss_pred             CCcccccccchhHHHHHHHHHhcCCCCeeEEEEEecCCCcHHHHHHHHHHHhcCCCCceEeeccccccccccCchHHHHH
Q 039455           22 PSAVDGLVGIASRMEKMNGYLEAGLDDVRFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLANVREVSVTRGLVPLQEQ  101 (216)
Q Consensus        22 ~~~~~~~vgR~~~~~~l~~~l~~~~~~~~~i~I~G~~GiGKTtL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  101 (216)
                      |..-++++|.+..++.|.+++..+ .-...++++|+.|+||||+++.++..+..... ..... +.       ....+..
T Consensus        12 PqtFdEVIGQe~Vv~~L~~aL~~g-RL~HAyLFtGPpGvGKTTlAriLAKaLnCe~~-~~~~P-CG-------~C~sCr~   81 (830)
T PRK07003         12 PKDFASLVGQEHVVRALTHALDGG-RLHHAYLFTGTRGVGKTTLSRIFAKALNCETG-VTSQP-CG-------VCRACRE   81 (830)
T ss_pred             CCcHHHHcCcHHHHHHHHHHHhcC-CCCeEEEEECCCCCCHHHHHHHHHHHhcCccC-CCCCC-Cc-------ccHHHHH
Confidence            345667999999999999998754 23456789999999999999999987642110 00000 00       0001111


Q ss_pred             HHHH----HHhhccccccchhhhHHHHHH----HhCCceEEEEEeCCCCHH--HHHHhhcCCCCCCCCcEEEEEeCCchh
Q 039455          102 LLSE----VLMERNLIIWDVHKGINLIRW----RLCRKRVLVVLDDVDQLE--QLQALAGNHDWFGFGSRIIITTRDEHV  171 (216)
Q Consensus       102 l~~~----~~~~~~~~~~~~~~~~~~l~~----~l~~~~~llvlDd~~~~~--~~~~l~~~~~~~~~~~~il~tsr~~~~  171 (216)
                      +...    +...........+.....+..    ...++.-++|||+++.+.  .++.++..+..-..+..+|++|++.+-
T Consensus        82 I~~G~h~DviEIDAas~rgVDdIReLIe~a~~~P~~gr~KVIIIDEah~LT~~A~NALLKtLEEPP~~v~FILaTtd~~K  161 (830)
T PRK07003         82 IDEGRFVDYVEMDAASNRGVDEMAALLERAVYAPVDARFKVYMIDEVHMLTNHAFNAMLKTLEEPPPHVKFILATTDPQK  161 (830)
T ss_pred             HhcCCCceEEEecccccccHHHHHHHHHHHHhccccCCceEEEEeChhhCCHHHHHHHHHHHHhcCCCeEEEEEECChhh
Confidence            1000    000000000011111111111    112345689999998663  466666655433456778888876542


Q ss_pred             -hhcc-CCcceEEecCCChHHHHHHHhhhhcCCC--CCchhHhhhc
Q 039455          172 -LKGH-GVTNIYKVRGLDYVEALQLFHLKVSKGK--QPTDDRVELS  213 (216)
Q Consensus       172 -~~~~-~~~~~~~l~~l~~~~~~~ll~~~~~~~~--~~~~~~~~l~  213 (216)
                       ...+ .....|++++++.++..+.|.+.+...+  .+++.++.|+
T Consensus       162 Ip~TIrSRCq~f~Fk~Ls~eeIv~~L~~Il~~EgI~id~eAL~lIA  207 (830)
T PRK07003        162 IPVTVLSRCLQFNLKQMPAGHIVSHLERILGEERIAFEPQALRLLA  207 (830)
T ss_pred             ccchhhhheEEEecCCcCHHHHHHHHHHHHHHcCCCCCHHHHHHHH
Confidence             2222 2237899999999999999988765444  3345555544

>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily

Probab=99.28  E-value=3.3e-10  Score=88.90  Aligned_cols=144  Identities=22%  Similarity=0.188  Sum_probs=78.6

Q ss_pred             eeEEEEEecCCCcHHHHHHHHHHHhcCCCCceEeeccccccccccCchHHHHHHHHHHHhhccccccchhhhHHH----H
Q 039455           49 VRFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLANVREVSVTRGLVPLQEQLLSEVLMERNLIIWDVHKGINL----I  124 (216)
Q Consensus        49 ~~~i~I~G~~GiGKTtL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~----l  124 (216)
                      ...++|+|++|+|||||++.++..+...-....|+...     ......+...++..+....  ...+.......    +
T Consensus        43 ~~~~~l~G~~G~GKTtl~~~l~~~l~~~~~~~~~~~~~-----~~~~~~~l~~i~~~lG~~~--~~~~~~~~~~~l~~~l  115 (269)
T TIGR03015        43 EGFILITGEVGAGKTTLIRNLLKRLDQERVVAAKLVNT-----RVDAEDLLRMVAADFGLET--EGRDKAALLRELEDFL  115 (269)
T ss_pred             CCEEEEEcCCCCCHHHHHHHHHHhcCCCCeEEeeeeCC-----CCCHHHHHHHHHHHcCCCC--CCCCHHHHHHHHHHHH
Confidence            46899999999999999999998776321122232211     1233344555554442221  11111111222    2


Q ss_pred             HHH-hCCceEEEEEeCCCCHH--HHHHhh--cCCC-CCCCCcEEEEEeCCchhhhcc----------CCcceEEecCCCh
Q 039455          125 RWR-LCRKRVLVVLDDVDQLE--QLQALA--GNHD-WFGFGSRIIITTRDEHVLKGH----------GVTNIYKVRGLDY  188 (216)
Q Consensus       125 ~~~-l~~~~~llvlDd~~~~~--~~~~l~--~~~~-~~~~~~~il~tsr~~~~~~~~----------~~~~~~~l~~l~~  188 (216)
                      ... ..+++.+||+||++...  .+..+.  ..+. .......+++|.... +...+          .....+.++|++.
T Consensus       116 ~~~~~~~~~~vliiDe~~~l~~~~~~~l~~l~~~~~~~~~~~~vvl~g~~~-~~~~l~~~~~~~l~~r~~~~~~l~~l~~  194 (269)
T TIGR03015       116 IEQFAAGKRALLVVDEAQNLTPELLEELRMLSNFQTDNAKLLQIFLVGQPE-FRETLQSPQLQQLRQRIIASCHLGPLDR  194 (269)
T ss_pred             HHHHhCCCCeEEEEECcccCCHHHHHHHHHHhCcccCCCCeEEEEEcCCHH-HHHHHcCchhHHHHhheeeeeeCCCCCH
Confidence            222 25678899999997653  333322  1111 111223455555432 22111          1245789999999


Q ss_pred             HHHHHHHhhhhc
Q 039455          189 VEALQLFHLKVS  200 (216)
Q Consensus       189 ~~~~~ll~~~~~  200 (216)
                      ++..+++.....
T Consensus       195 ~e~~~~l~~~l~  206 (269)
T TIGR03015       195 EETREYIEHRLE  206 (269)
T ss_pred             HHHHHHHHHHHH
Confidence            999999987653

Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.

>PF13173 AAA_14: AAA domain

Probab=99.28  E-value=1.9e-11  Score=85.28  Aligned_cols=120  Identities=20%  Similarity=0.199  Sum_probs=77.2

Q ss_pred             eeEEEEEecCCCcHHHHHHHHHHHhcCCCCceEeeccccccccccCchHHHHHHHHHHHhhccccccchhhhHHHHHHHh
Q 039455           49 VRFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLANVREVSVTRGLVPLQEQLLSEVLMERNLIIWDVHKGINLIRWRL  128 (216)
Q Consensus        49 ~~~i~I~G~~GiGKTtL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l  128 (216)
                      .++++|.|+.|+|||||++.++.... ......++. ..+..   .     ....            ..+ ..+.+.+..
T Consensus         2 ~~~~~l~G~R~vGKTtll~~~~~~~~-~~~~~~yi~-~~~~~---~-----~~~~------------~~~-~~~~~~~~~   58 (128)
T PF13173_consen    2 RKIIILTGPRGVGKTTLLKQLAKDLL-PPENILYIN-FDDPR---D-----RRLA------------DPD-LLEYFLELI   58 (128)
T ss_pred             CCeEEEECCCCCCHHHHHHHHHHHhc-ccccceeec-cCCHH---H-----HHHh------------hhh-hHHHHHHhh
Confidence            47899999999999999999998765 223444443 11100   0     0000            000 122233333


Q ss_pred             CCceEEEEEeCCCCHHHHHHhhcCCCCCCCCcEEEEEeCCchhhhc------cCCcceEEecCCChHHH
Q 039455          129 CRKRVLVVLDDVDQLEQLQALAGNHDWFGFGSRIIITTRDEHVLKG------HGVTNIYKVRGLDYVEA  191 (216)
Q Consensus       129 ~~~~~llvlDd~~~~~~~~~l~~~~~~~~~~~~il~tsr~~~~~~~------~~~~~~~~l~~l~~~~~  191 (216)
                      ..++.+|+||++.....|...+..+.+..+..+|++|++.......      .+....+++.||+.+|.
T Consensus        59 ~~~~~~i~iDEiq~~~~~~~~lk~l~d~~~~~~ii~tgS~~~~l~~~~~~~l~gr~~~~~l~Plsf~E~  127 (128)
T PF13173_consen   59 KPGKKYIFIDEIQYLPDWEDALKFLVDNGPNIKIILTGSSSSLLSKDIAESLAGRVIEIELYPLSFREF  127 (128)
T ss_pred             ccCCcEEEEehhhhhccHHHHHHHHHHhccCceEEEEccchHHHhhcccccCCCeEEEEEECCCCHHHh
Confidence            3467899999999888887777666554556899999987654422      12346789999998874

>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda

Probab=99.25  E-value=7e-11  Score=90.37  Aligned_cols=157  Identities=18%  Similarity=0.239  Sum_probs=89.6

Q ss_pred             cccccc--chhHHHHHHHHHhcCCCCeeEEEEEecCCCcHHHHHHHHHHHhcCCCCceEeeccccccccccCchHHHHHH
Q 039455           25 VDGLVG--IASRMEKMNGYLEAGLDDVRFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLANVREVSVTRGLVPLQEQL  102 (216)
Q Consensus        25 ~~~~vg--R~~~~~~l~~~l~~~~~~~~~i~I~G~~GiGKTtL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  102 (216)
                      -++|++  .+..++.+.+++..  .....+.|+|++|+|||+|++.++.+..+......++. +....      .....+
T Consensus        14 ~~~~~~~~~~~~~~~l~~~~~~--~~~~~lll~G~~G~GKT~la~~~~~~~~~~~~~~~~i~-~~~~~------~~~~~~   84 (226)
T TIGR03420        14 FDNFYAGGNAELLAALRQLAAG--KGDRFLYLWGESGSGKSHLLQAACAAAEERGKSAIYLP-LAELA------QADPEV   84 (226)
T ss_pred             hcCcCcCCcHHHHHHHHHHHhc--CCCCeEEEECCCCCCHHHHHHHHHHHHHhcCCcEEEEe-HHHHH------HhHHHH
Confidence            345663  44567777777653  34579999999999999999999987654433444443 11110      000000


Q ss_pred             HHHHHhhccccccchhhhHHHHHHHhCCceEEEEEeCCCCHH---H-HHHhhcCCCC-CCCCcEEEEEeCCch-------
Q 039455          103 LSEVLMERNLIIWDVHKGINLIRWRLCRKRVLVVLDDVDQLE---Q-LQALAGNHDW-FGFGSRIIITTRDEH-------  170 (216)
Q Consensus       103 ~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~llvlDd~~~~~---~-~~~l~~~~~~-~~~~~~il~tsr~~~-------  170 (216)
                                            ...+. +.-+|+|||++...   . ...+...+.. ...+..+|+|++...       
T Consensus        85 ----------------------~~~~~-~~~lLvIDdi~~l~~~~~~~~~L~~~l~~~~~~~~~iIits~~~~~~~~~~~  141 (226)
T TIGR03420        85 ----------------------LEGLE-QADLVCLDDVEAIAGQPEWQEALFHLYNRVREAGGRLLIAGRAAPAQLPLRL  141 (226)
T ss_pred             ----------------------Hhhcc-cCCEEEEeChhhhcCChHHHHHHHHHHHHHHHcCCeEEEECCCChHHCCccc
Confidence                                  01111 22389999997543   1 2223222211 023356888887432       


Q ss_pred             --hhhccCCcceEEecCCChHHHHHHHhhhhcCCC--CCchhHhhhc
Q 039455          171 --VLKGHGVTNIYKVRGLDYVEALQLFHLKVSKGK--QPTDDRVELS  213 (216)
Q Consensus       171 --~~~~~~~~~~~~l~~l~~~~~~~ll~~~~~~~~--~~~~~~~~l~  213 (216)
                        +.+.......++++|++.++...++.......+  .+++.++.|+
T Consensus       142 ~~L~~r~~~~~~i~l~~l~~~e~~~~l~~~~~~~~~~~~~~~l~~L~  188 (226)
T TIGR03420       142 PDLRTRLAWGLVFQLPPLSDEEKIAALQSRAARRGLQLPDEVADYLL  188 (226)
T ss_pred             HHHHHHHhcCeeEecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHH
Confidence              122222246899999999999999987653322  3444444443

Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.

>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A

Probab=99.23  E-value=5.8e-11  Score=87.79  Aligned_cols=50  Identities=28%  Similarity=0.476  Sum_probs=35.3

Q ss_pred             ccccchhHHHHHHHHHh-cCCCCeeEEEEEecCCCcHHHHHHHHHHHhcCC
Q 039455           27 GLVGIASRMEKMNGYLE-AGLDDVRFIGICGMGGIGKTTLAKVLYNTLKDQ   76 (216)
Q Consensus        27 ~~vgR~~~~~~l~~~l~-~~~~~~~~i~I~G~~GiGKTtL~~~~~~~~~~~   76 (216)
                      .|+||+.+++++...+. ......+.++|+|++|+|||+|++.+...+...
T Consensus         1 ~fvgR~~e~~~l~~~l~~~~~~~~~~~ll~G~~G~GKT~ll~~~~~~~~~~   51 (185)
T PF13191_consen    1 QFVGREEEIERLRDLLDAAQSGSPRNLLLTGESGSGKTSLLRALLDRLAER   51 (185)
T ss_dssp             --TT-HHHHHHHHHTTGGTSS-----EEE-B-TTSSHHHHHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHHHHcCCCcEEEEECCCCCCHHHHHHHHHHHHHhc
Confidence            48999999999999985 224557899999999999999999999877765

>PRK04195 replication factor C large subunit; Provisional

Probab=99.23  E-value=1.5e-10  Score=98.01  Aligned_cols=168  Identities=20%  Similarity=0.252  Sum_probs=100.3

Q ss_pred             CCcccccccchhHHHHHHHHHhcC--CCCeeEEEEEecCCCcHHHHHHHHHHHhcCCCCceEeeccccccccccCchHHH
Q 039455           22 PSAVDGLVGIASRMEKMNGYLEAG--LDDVRFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLANVREVSVTRGLVPLQ   99 (216)
Q Consensus        22 ~~~~~~~vgR~~~~~~l~~~l~~~--~~~~~~i~I~G~~GiGKTtL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   99 (216)
                      |....+++|++...+.+..|+..-  +...+.+.|+||+|+||||+|+.+++.+.  +.... +. .+.   ... ...+
T Consensus        10 P~~l~dlvg~~~~~~~l~~~l~~~~~g~~~~~lLL~GppG~GKTtla~ala~el~--~~~ie-ln-asd---~r~-~~~i   81 (482)
T PRK04195         10 PKTLSDVVGNEKAKEQLREWIESWLKGKPKKALLLYGPPGVGKTSLAHALANDYG--WEVIE-LN-ASD---QRT-ADVI   81 (482)
T ss_pred             CCCHHHhcCCHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHHcC--CCEEE-Ec-ccc---ccc-HHHH
Confidence            455677999999999999998742  22368999999999999999999998763  22221 11 111   111 1112


Q ss_pred             HHHHHHHHhhccccccchhhhHHHHHHHhCCceEEEEEeCCCCHH------HHHHhhcCCCCCCCCcEEEEEeCCchhhh
Q 039455          100 EQLLSEVLMERNLIIWDVHKGINLIRWRLCRKRVLVVLDDVDQLE------QLQALAGNHDWFGFGSRIIITTRDEHVLK  173 (216)
Q Consensus       100 ~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~llvlDd~~~~~------~~~~l~~~~~~~~~~~~il~tsr~~~~~~  173 (216)
                      ..++.......               ..+..++.+|||||++...      .+..+...+.  ..++.+|+++.+..-..
T Consensus        82 ~~~i~~~~~~~---------------sl~~~~~kvIiIDEaD~L~~~~d~~~~~aL~~~l~--~~~~~iIli~n~~~~~~  144 (482)
T PRK04195         82 ERVAGEAATSG---------------SLFGARRKLILLDEVDGIHGNEDRGGARAILELIK--KAKQPIILTANDPYDPS  144 (482)
T ss_pred             HHHHHHhhccC---------------cccCCCCeEEEEecCcccccccchhHHHHHHHHHH--cCCCCEEEeccCccccc
Confidence            22221111000               0111356799999997652      2344433332  23456777776542211


Q ss_pred             ---ccCCcceEEecCCChHHHHHHHhhhhcCCC--CCchhHhhhcc
Q 039455          174 ---GHGVTNIYKVRGLDYVEALQLFHLKVSKGK--QPTDDRVELSK  214 (216)
Q Consensus       174 ---~~~~~~~~~l~~l~~~~~~~ll~~~~~~~~--~~~~~~~~l~~  214 (216)
                         .......+++++++.++....+.+.+...+  .+++.++.|++
T Consensus       145 ~k~Lrsr~~~I~f~~~~~~~i~~~L~~i~~~egi~i~~eaL~~Ia~  190 (482)
T PRK04195        145 LRELRNACLMIEFKRLSTRSIVPVLKRICRKEGIECDDEALKEIAE  190 (482)
T ss_pred             hhhHhccceEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Confidence               122457899999999999999988764444  34455555543

>PLN03025 replication factor C subunit; Provisional

Probab=99.22  E-value=1.6e-10  Score=92.92  Aligned_cols=172  Identities=17%  Similarity=0.253  Sum_probs=96.2

Q ss_pred             CCcccccccchhHHHHHHHHHhcCCCCeeEEEEEecCCCcHHHHHHHHHHHhcCC-CCceEeeccccccccccCchHHHH
Q 039455           22 PSAVDGLVGIASRMEKMNGYLEAGLDDVRFIGICGMGGIGKTTLAKVLYNTLKDQ-FEASSFLANVREVSVTRGLVPLQE  100 (216)
Q Consensus        22 ~~~~~~~vgR~~~~~~l~~~l~~~~~~~~~i~I~G~~GiGKTtL~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~  100 (216)
                      |..-.+++|.++.++.|..++..+  +.+.+.++||+|+||||+|..++..+... +.....-.+.++   ..+. ....
T Consensus         9 P~~l~~~~g~~~~~~~L~~~~~~~--~~~~lll~Gp~G~GKTtla~~la~~l~~~~~~~~~~eln~sd---~~~~-~~vr   82 (319)
T PLN03025          9 PTKLDDIVGNEDAVSRLQVIARDG--NMPNLILSGPPGTGKTTSILALAHELLGPNYKEAVLELNASD---DRGI-DVVR   82 (319)
T ss_pred             CCCHHHhcCcHHHHHHHHHHHhcC--CCceEEEECCCCCCHHHHHHHHHHHHhcccCccceeeecccc---cccH-HHHH
Confidence            455677999999999998887753  34678999999999999999999876332 211111000110   1111 1111


Q ss_pred             HHHHHHHhhccccccchhhhHHHHHHHhCCceEEEEEeCCCCHH--HHHHhhcCCCCCCCCcEEEEEeCCch-hhhcc-C
Q 039455          101 QLLSEVLMERNLIIWDVHKGINLIRWRLCRKRVLVVLDDVDQLE--QLQALAGNHDWFGFGSRIIITTRDEH-VLKGH-G  176 (216)
Q Consensus       101 ~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~llvlDd~~~~~--~~~~l~~~~~~~~~~~~il~tsr~~~-~~~~~-~  176 (216)
                      .....+.... .             ....++.-+++|||++...  ....+...+......+.+++++.... +...+ .
T Consensus        83 ~~i~~~~~~~-~-------------~~~~~~~kviiiDE~d~lt~~aq~aL~~~lE~~~~~t~~il~~n~~~~i~~~L~S  148 (319)
T PLN03025         83 NKIKMFAQKK-V-------------TLPPGRHKIVILDEADSMTSGAQQALRRTMEIYSNTTRFALACNTSSKIIEPIQS  148 (319)
T ss_pred             HHHHHHHhcc-c-------------cCCCCCeEEEEEechhhcCHHHHHHHHHHHhcccCCceEEEEeCCccccchhHHH
Confidence            1111100000 0             0001346799999998652  22233222222234566777775432 21111 1


Q ss_pred             CcceEEecCCChHHHHHHHhhhhcCCC--CCchhHhhhc
Q 039455          177 VTNIYKVRGLDYVEALQLFHLKVSKGK--QPTDDRVELS  213 (216)
Q Consensus       177 ~~~~~~l~~l~~~~~~~ll~~~~~~~~--~~~~~~~~l~  213 (216)
                      ....+++++++.++....+...+-..+  .+++.++.|+
T Consensus       149 Rc~~i~f~~l~~~~l~~~L~~i~~~egi~i~~~~l~~i~  187 (319)
T PLN03025        149 RCAIVRFSRLSDQEILGRLMKVVEAEKVPYVPEGLEAII  187 (319)
T ss_pred             hhhcccCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHH
Confidence            236799999999999999987764444  3344555443

>PRK14961 DNA polymerase III subunits gamma and tau; Provisional

Probab=99.22  E-value=5.2e-10  Score=91.43  Aligned_cols=180  Identities=16%  Similarity=0.127  Sum_probs=99.3

Q ss_pred             CcccccccchhHHHHHHHHHhcCCCCeeEEEEEecCCCcHHHHHHHHHHHhcCCCCceEeeccccccccccCchHHHHHH
Q 039455           23 SAVDGLVGIASRMEKMNGYLEAGLDDVRFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLANVREVSVTRGLVPLQEQL  102 (216)
Q Consensus        23 ~~~~~~vgR~~~~~~l~~~l~~~~~~~~~i~I~G~~GiGKTtL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  102 (216)
                      ..-.+++|.+...+.|...+..+ .-...+.++||+|+||||+|+.++..+........   .      +-.....+..+
T Consensus        13 ~~~~~iiGq~~~~~~l~~~~~~~-~~~h~~L~~Gp~G~GKTtla~~la~~l~c~~~~~~---~------pc~~c~~c~~~   82 (363)
T PRK14961         13 QYFRDIIGQKHIVTAISNGLSLG-RIHHAWLLSGTRGVGKTTIARLLAKSLNCQNGITS---N------PCRKCIICKEI   82 (363)
T ss_pred             CchhhccChHHHHHHHHHHHHcC-CCCeEEEEecCCCCCHHHHHHHHHHHhcCCCCCCC---C------CCCCCHHHHHH
Confidence            34567899999999999988753 23456799999999999999999987642110000   0      00000001111


Q ss_pred             HHHHHh----hccccccchhhhHHHHHHH-----hCCceEEEEEeCCCCHH--HHHHhhcCCCCCCCCcEEEEEeCCch-
Q 039455          103 LSEVLM----ERNLIIWDVHKGINLIRWR-----LCRKRVLVVLDDVDQLE--QLQALAGNHDWFGFGSRIIITTRDEH-  170 (216)
Q Consensus       103 ~~~~~~----~~~~~~~~~~~~~~~l~~~-----l~~~~~llvlDd~~~~~--~~~~l~~~~~~~~~~~~il~tsr~~~-  170 (216)
                      ......    .........+. ...+...     ..++.-++||||++...  .+..++..+..-.....+|++|.+.. 
T Consensus        83 ~~~~~~d~~~~~~~~~~~v~~-ir~i~~~~~~~p~~~~~kviIIDEa~~l~~~a~naLLk~lEe~~~~~~fIl~t~~~~~  161 (363)
T PRK14961         83 EKGLCLDLIEIDAASRTKVEE-MREILDNIYYSPSKSRFKVYLIDEVHMLSRHSFNALLKTLEEPPQHIKFILATTDVEK  161 (363)
T ss_pred             hcCCCCceEEecccccCCHHH-HHHHHHHHhcCcccCCceEEEEEChhhcCHHHHHHHHHHHhcCCCCeEEEEEcCChHh
Confidence            000000    00000001111 1111111     12345699999998664  45556655543345566777665543 


Q ss_pred             hhhcc-CCcceEEecCCChHHHHHHHhhhhcCCC--CCchhHhhhc
Q 039455          171 VLKGH-GVTNIYKVRGLDYVEALQLFHLKVSKGK--QPTDDRVELS  213 (216)
Q Consensus       171 ~~~~~-~~~~~~~l~~l~~~~~~~ll~~~~~~~~--~~~~~~~~l~  213 (216)
                      +...+ +....++++|++.++..+++...+...+  .+++.++.|+
T Consensus       162 l~~tI~SRc~~~~~~~l~~~el~~~L~~~~~~~g~~i~~~al~~ia  207 (363)
T PRK14961        162 IPKTILSRCLQFKLKIISEEKIFNFLKYILIKESIDTDEYALKLIA  207 (363)
T ss_pred             hhHHHHhhceEEeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHH
Confidence            32222 2247899999999999999987554333  3344444443

>PRK09087 hypothetical protein; Validated

Probab=99.21  E-value=8.1e-11  Score=89.84  Aligned_cols=125  Identities=14%  Similarity=0.143  Sum_probs=79.6

Q ss_pred             eeEEEEEecCCCcHHHHHHHHHHHhcCCCCceEeeccccccccccCchHHHHHHHHHHHhhccccccchhhhHHHHHHHh
Q 039455           49 VRFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLANVREVSVTRGLVPLQEQLLSEVLMERNLIIWDVHKGINLIRWRL  128 (216)
Q Consensus        49 ~~~i~I~G~~GiGKTtL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l  128 (216)
                      .+.+.|+|++|+|||||++.++....     ..|++. .         .+...+...+                      
T Consensus        44 ~~~l~l~G~~GsGKThLl~~~~~~~~-----~~~i~~-~---------~~~~~~~~~~----------------------   86 (226)
T PRK09087         44 SPVVVLAGPVGSGKTHLASIWREKSD-----ALLIHP-N---------EIGSDAANAA----------------------   86 (226)
T ss_pred             CCeEEEECCCCCCHHHHHHHHHHhcC-----CEEecH-H---------HcchHHHHhh----------------------
Confidence            46799999999999999999886532     224431 0         0111111110                      


Q ss_pred             CCceEEEEEeCCCCH----HHHHHhhcCCCCCCCCcEEEEEeCC---------chhhhccCCcceEEecCCChHHHHHHH
Q 039455          129 CRKRVLVVLDDVDQL----EQLQALAGNHDWFGFGSRIIITTRD---------EHVLKGHGVTNIYKVRGLDYVEALQLF  195 (216)
Q Consensus       129 ~~~~~llvlDd~~~~----~~~~~l~~~~~~~~~~~~il~tsr~---------~~~~~~~~~~~~~~l~~l~~~~~~~ll  195 (216)
                      .+  -+|++||++..    +.+..+.....  ..+..+|+|++.         +.+.+++.....+++++++.++..+++
T Consensus        87 ~~--~~l~iDDi~~~~~~~~~lf~l~n~~~--~~g~~ilits~~~p~~~~~~~~dL~SRl~~gl~~~l~~pd~e~~~~iL  162 (226)
T PRK09087         87 AE--GPVLIEDIDAGGFDETGLFHLINSVR--QAGTSLLMTSRLWPSSWNVKLPDLKSRLKAATVVEIGEPDDALLSQVI  162 (226)
T ss_pred             hc--CeEEEECCCCCCCCHHHHHHHHHHHH--hCCCeEEEECCCChHHhccccccHHHHHhCCceeecCCCCHHHHHHHH
Confidence            01  27889999643    33333333332  346788988873         345556667799999999999999999


Q ss_pred             hhhhcCCC--CCchhHhhhcc
Q 039455          196 HLKVSKGK--QPTDDRVELSK  214 (216)
Q Consensus       196 ~~~~~~~~--~~~~~~~~l~~  214 (216)
                      ++.+-..+  .+++.++.|++
T Consensus       163 ~~~~~~~~~~l~~ev~~~La~  183 (226)
T PRK09087        163 FKLFADRQLYVDPHVVYYLVS  183 (226)
T ss_pred             HHHHHHcCCCCCHHHHHHHHH
Confidence            98874433  45556655554

>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit

Probab=99.21  E-value=1.6e-10  Score=92.37  Aligned_cols=51  Identities=25%  Similarity=0.450  Sum_probs=41.7

Q ss_pred             ccccccchhHHHHHHHHHhcC---CCCeeEEEEEecCCCcHHHHHHHHHHHhcC
Q 039455           25 VDGLVGIASRMEKMNGYLEAG---LDDVRFIGICGMGGIGKTTLAKVLYNTLKD   75 (216)
Q Consensus        25 ~~~~vgR~~~~~~l~~~l~~~---~~~~~~i~I~G~~GiGKTtL~~~~~~~~~~   75 (216)
                      -.+|+|+++.++.|..++...   ......++++||+|+|||+|++.+++.+..
T Consensus         3 ~~~~iG~~~~~~~l~~~l~~~~~~~~~~~~~ll~Gp~G~GKT~la~~ia~~~~~   56 (305)
T TIGR00635         3 LAEFIGQEKVKEQLQLFIEAAKMRQEALDHLLLYGPPGLGKTTLAHIIANEMGV   56 (305)
T ss_pred             HHHHcCHHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHHhCC
Confidence            357999999999999888632   233467899999999999999999987653

RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.

>PRK14960 DNA polymerase III subunits gamma and tau; Provisional

Probab=99.21  E-value=5.5e-10  Score=95.64  Aligned_cols=182  Identities=16%  Similarity=0.141  Sum_probs=102.6

Q ss_pred             CCcccccccchhHHHHHHHHHhcCCCCeeEEEEEecCCCcHHHHHHHHHHHhcCCCCceEeeccccccccccCchHHHHH
Q 039455           22 PSAVDGLVGIASRMEKMNGYLEAGLDDVRFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLANVREVSVTRGLVPLQEQ  101 (216)
Q Consensus        22 ~~~~~~~vgR~~~~~~l~~~l~~~~~~~~~i~I~G~~GiGKTtL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  101 (216)
                      |..-.+++|.+...+.|.+++..+ .-...++++||+|+||||+|+.++..+.....    .. ..    .-.....+..
T Consensus        11 PktFddVIGQe~vv~~L~~aI~~g-rl~HAyLF~GPpGvGKTTlAriLAK~LnC~~~----~~-~~----pCg~C~sC~~   80 (702)
T PRK14960         11 PRNFNELVGQNHVSRALSSALERG-RLHHAYLFTGTRGVGKTTIARILAKCLNCETG----VT-ST----PCEVCATCKA   80 (702)
T ss_pred             CCCHHHhcCcHHHHHHHHHHHHcC-CCCeEEEEECCCCCCHHHHHHHHHHHhCCCcC----CC-CC----CCccCHHHHH
Confidence            345667999999999999998854 23468899999999999999999987642110    00 00    0000000000


Q ss_pred             HHHH----HHhhccccccchhhhHHHHH----HHhCCceEEEEEeCCCCH--HHHHHhhcCCCCCCCCcEEEEEeCCchh
Q 039455          102 LLSE----VLMERNLIIWDVHKGINLIR----WRLCRKRVLVVLDDVDQL--EQLQALAGNHDWFGFGSRIIITTRDEHV  171 (216)
Q Consensus       102 l~~~----~~~~~~~~~~~~~~~~~~l~----~~l~~~~~llvlDd~~~~--~~~~~l~~~~~~~~~~~~il~tsr~~~~  171 (216)
                      +...    +...........+.....+.    ....++.-++|||+++.+  .....++..+..-..+..+|++|.+..-
T Consensus        81 I~~g~hpDviEIDAAs~~~VddIReli~~~~y~P~~gk~KV~IIDEVh~LS~~A~NALLKtLEEPP~~v~FILaTtd~~k  160 (702)
T PRK14960         81 VNEGRFIDLIEIDAASRTKVEDTRELLDNVPYAPTQGRFKVYLIDEVHMLSTHSFNALLKTLEEPPEHVKFLFATTDPQK  160 (702)
T ss_pred             HhcCCCCceEEecccccCCHHHHHHHHHHHhhhhhcCCcEEEEEechHhcCHHHHHHHHHHHhcCCCCcEEEEEECChHh
Confidence            0000    00000000001111111111    112345679999999865  4555566555433456678887776532


Q ss_pred             -hhc-cCCcceEEecCCChHHHHHHHhhhhcCCC--CCchhHhhhc
Q 039455          172 -LKG-HGVTNIYKVRGLDYVEALQLFHLKVSKGK--QPTDDRVELS  213 (216)
Q Consensus       172 -~~~-~~~~~~~~l~~l~~~~~~~ll~~~~~~~~--~~~~~~~~l~  213 (216)
                       ... ......+++++++.++..+.+.+.+...+  ..++.+..|+
T Consensus       161 Ip~TIlSRCq~feFkpLs~eEI~k~L~~Il~kEgI~id~eAL~~IA  206 (702)
T PRK14960        161 LPITVISRCLQFTLRPLAVDEITKHLGAILEKEQIAADQDAIWQIA  206 (702)
T ss_pred             hhHHHHHhhheeeccCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHH
Confidence             111 12348899999999999999987764444  3344555554

>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed

Probab=99.20  E-value=2.1e-10  Score=92.57  Aligned_cols=54  Identities=28%  Similarity=0.482  Sum_probs=44.0

Q ss_pred             CCcccccccchhHHHHHHHHHhc---CCCCeeEEEEEecCCCcHHHHHHHHHHHhcC
Q 039455           22 PSAVDGLVGIASRMEKMNGYLEA---GLDDVRFIGICGMGGIGKTTLAKVLYNTLKD   75 (216)
Q Consensus        22 ~~~~~~~vgR~~~~~~l~~~l~~---~~~~~~~i~I~G~~GiGKTtL~~~~~~~~~~   75 (216)
                      |....+|+||+..++.+..++..   .......++|+||+|+|||+||+.+++.+..
T Consensus        21 P~~~~~~vG~~~~~~~l~~~l~~~~~~~~~~~~~ll~GppG~GKT~la~~ia~~l~~   77 (328)
T PRK00080         21 PKSLDEFIGQEKVKENLKIFIEAAKKRGEALDHVLLYGPPGLGKTTLANIIANEMGV   77 (328)
T ss_pred             cCCHHHhcCcHHHHHHHHHHHHHHHhcCCCCCcEEEECCCCccHHHHHHHHHHHhCC
Confidence            44567899999999999887763   2334568999999999999999999998753

>PRK14963 DNA polymerase III subunits gamma and tau; Provisional

Probab=99.20  E-value=7.2e-10  Score=93.75  Aligned_cols=183  Identities=16%  Similarity=0.109  Sum_probs=101.5

Q ss_pred             CCcccccccchhHHHHHHHHHhcCCCCeeEEEEEecCCCcHHHHHHHHHHHhcCC--CCceEeeccccc-cc--cccCch
Q 039455           22 PSAVDGLVGIASRMEKMNGYLEAGLDDVRFIGICGMGGIGKTTLAKVLYNTLKDQ--FEASSFLANVRE-VS--VTRGLV   96 (216)
Q Consensus        22 ~~~~~~~vgR~~~~~~l~~~l~~~~~~~~~i~I~G~~GiGKTtL~~~~~~~~~~~--~~~~~~~~~~~~-~~--~~~~~~   96 (216)
                      |..-++++|.+...+.|..++... .-...++++||+|+||||+|+.++..+...  .+...|.+.... ..  ...++.
T Consensus        10 P~~~~dvvGq~~v~~~L~~~i~~~-~l~ha~Lf~GppGtGKTTlA~~lA~~l~c~~~~~~~cg~C~sc~~i~~~~h~dv~   88 (504)
T PRK14963         10 PITFDEVVGQEHVKEVLLAALRQG-RLGHAYLFSGPRGVGKTTTARLIAMAVNCSGEDPKPCGECESCLAVRRGAHPDVL   88 (504)
T ss_pred             CCCHHHhcChHHHHHHHHHHHHcC-CCCeEEEEECCCCCCHHHHHHHHHHHHhccCCCCCCCCcChhhHHHhcCCCCceE
Confidence            344567899999999999988764 234567999999999999999999876421  111222110000 00  000000


Q ss_pred             HHHHHHHHHHHhhccccccchhhhHHHHHH-HhCCceEEEEEeCCCCH--HHHHHhhcCCCCCCCCcEEEEEeCCch-hh
Q 039455           97 PLQEQLLSEVLMERNLIIWDVHKGINLIRW-RLCRKRVLVVLDDVDQL--EQLQALAGNHDWFGFGSRIIITTRDEH-VL  172 (216)
Q Consensus        97 ~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~-~l~~~~~llvlDd~~~~--~~~~~l~~~~~~~~~~~~il~tsr~~~-~~  172 (216)
                      .+-        ................+.. .+.+++-++|||+++..  +.+..++..+..-.....+|++++... +.
T Consensus        89 el~--------~~~~~~vd~iR~l~~~~~~~p~~~~~kVVIIDEad~ls~~a~naLLk~LEep~~~t~~Il~t~~~~kl~  160 (504)
T PRK14963         89 EID--------AASNNSVEDVRDLREKVLLAPLRGGRKVYILDEAHMMSKSAFNALLKTLEEPPEHVIFILATTEPEKMP  160 (504)
T ss_pred             Eec--------ccccCCHHHHHHHHHHHhhccccCCCeEEEEECccccCHHHHHHHHHHHHhCCCCEEEEEEcCChhhCC
Confidence            000        0000000001111111111 12345679999999855  446666655543334555666665442 22


Q ss_pred             hcc-CCcceEEecCCChHHHHHHHhhhhcCCC--CCchhHhhhc
Q 039455          173 KGH-GVTNIYKVRGLDYVEALQLFHLKVSKGK--QPTDDRVELS  213 (216)
Q Consensus       173 ~~~-~~~~~~~l~~l~~~~~~~ll~~~~~~~~--~~~~~~~~l~  213 (216)
                      ..+ .....+++.+++.++..+++.+.+-..+  .+++.+..|+
T Consensus       161 ~~I~SRc~~~~f~~ls~~el~~~L~~i~~~egi~i~~~Al~~ia  204 (504)
T PRK14963        161 PTILSRTQHFRFRRLTEEEIAGKLRRLLEAEGREAEPEALQLVA  204 (504)
T ss_pred             hHHhcceEEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHH
Confidence            222 2346899999999999999998765444  2344455444

>PRK04841 transcriptional regulator MalT; Provisional

Probab=99.20  E-value=6.1e-10  Score=101.21  Aligned_cols=165  Identities=15%  Similarity=0.178  Sum_probs=100.7

Q ss_pred             CCCcccccccchhHHHHHHHHHhcCCCCeeEEEEEecCCCcHHHHHHHHHHHhcCCCCceEeeccccccccccCchHHHH
Q 039455           21 FPSAVDGLVGIASRMEKMNGYLEAGLDDVRFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLANVREVSVTRGLVPLQE  100 (216)
Q Consensus        21 ~~~~~~~~vgR~~~~~~l~~~l~~~~~~~~~i~I~G~~GiGKTtL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  100 (216)
                      +|+.+..++-|..-++.+...     ...++++|+||+|.||||++..+....    +.+.|++.-..   ..+...+..
T Consensus         9 ~p~~~~~~~~R~rl~~~l~~~-----~~~~~~~v~apaG~GKTtl~~~~~~~~----~~~~w~~l~~~---d~~~~~f~~   76 (903)
T PRK04841          9 RPVRLHNTVVRERLLAKLSGA-----NNYRLVLVTSPAGYGKTTLISQWAAGK----NNLGWYSLDES---DNQPERFAS   76 (903)
T ss_pred             CCCCccccCcchHHHHHHhcc-----cCCCeEEEECCCCCCHHHHHHHHHHhC----CCeEEEecCcc---cCCHHHHHH
Confidence            566677889998766666432     346899999999999999999998642    26889973222   223344445


Q ss_pred             HHHHHHHhhcccc------------ccchhhhHHHHHHHhC--CceEEEEEeCCCCHH------HHHHhhcCCCCCCCCc
Q 039455          101 QLLSEVLMERNLI------------IWDVHKGINLIRWRLC--RKRVLVVLDDVDQLE------QLQALAGNHDWFGFGS  160 (216)
Q Consensus       101 ~l~~~~~~~~~~~------------~~~~~~~~~~l~~~l~--~~~~llvlDd~~~~~------~~~~l~~~~~~~~~~~  160 (216)
                      .++..+.......            ..+.......+...+.  ..+++|||||++..+      .+..++...   ..+.
T Consensus        77 ~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~lvlDD~h~~~~~~~~~~l~~l~~~~---~~~~  153 (903)
T PRK04841         77 YLIAALQQATNGHCSKSEALAQKRQYASLSSLFAQLFIELADWHQPLYLVIDDYHLITNPEIHEAMRFFLRHQ---PENL  153 (903)
T ss_pred             HHHHHHHHhcCcccchhhhhhccCCcCCHHHHHHHHHHHHhcCCCCEEEEEeCcCcCCChHHHHHHHHHHHhC---CCCe
Confidence            5555553221110            0111222223333332  579999999996542      334444433   3567


Q ss_pred             EEEEEeCCchhhh--cc-CCcceEEec----CCChHHHHHHHhhhhc
Q 039455          161 RIIITTRDEHVLK--GH-GVTNIYKVR----GLDYVEALQLFHLKVS  200 (216)
Q Consensus       161 ~il~tsr~~~~~~--~~-~~~~~~~l~----~l~~~~~~~ll~~~~~  200 (216)
                      .+|+|||...-..  .+ ......++.    +|+.+|+.+||....+
T Consensus       154 ~lv~~sR~~~~~~~~~l~~~~~~~~l~~~~l~f~~~e~~~ll~~~~~  200 (903)
T PRK04841        154 TLVVLSRNLPPLGIANLRVRDQLLEIGSQQLAFDHQEAQQFFDQRLS  200 (903)
T ss_pred             EEEEEeCCCCCCchHhHHhcCcceecCHHhCCCCHHHHHHHHHhccC
Confidence            8889999742211  11 123345566    9999999999987653

>PRK14956 DNA polymerase III subunits gamma and tau; Provisional

Probab=99.19  E-value=2.8e-10  Score=94.54  Aligned_cols=182  Identities=14%  Similarity=0.106  Sum_probs=102.5

Q ss_pred             CCcccccccchhHHHHHHHHHhcCCCCeeEEEEEecCCCcHHHHHHHHHHHhcCCCC-ceEeeccccccccccCchHHHH
Q 039455           22 PSAVDGLVGIASRMEKMNGYLEAGLDDVRFIGICGMGGIGKTTLAKVLYNTLKDQFE-ASSFLANVREVSVTRGLVPLQE  100 (216)
Q Consensus        22 ~~~~~~~vgR~~~~~~l~~~l~~~~~~~~~i~I~G~~GiGKTtL~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~  100 (216)
                      |..-.+++|.+..++.|..++..+. -...++++||+|+||||+|+.++..+....+ .......+.          .+.
T Consensus        14 P~~f~dvVGQe~iv~~L~~~i~~~r-i~ha~Lf~GP~GtGKTTlAriLAk~Lnce~~~~~~pCg~C~----------sC~   82 (484)
T PRK14956         14 PQFFRDVIHQDLAIGALQNALKSGK-IGHAYIFFGPRGVGKTTIARILAKRLNCENPIGNEPCNECT----------SCL   82 (484)
T ss_pred             CCCHHHHhChHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHHhcCcccccCccccCCCc----------HHH
Confidence            3445678999999999999887542 2356899999999999999999987643211 000000000          000


Q ss_pred             HHHHH----HHh---hccccccchhhhHHHHHH-HhCCceEEEEEeCCCCH--HHHHHhhcCCCCCCCCcEEEEEeCCc-
Q 039455          101 QLLSE----VLM---ERNLIIWDVHKGINLIRW-RLCRKRVLVVLDDVDQL--EQLQALAGNHDWFGFGSRIIITTRDE-  169 (216)
Q Consensus       101 ~l~~~----~~~---~~~~~~~~~~~~~~~l~~-~l~~~~~llvlDd~~~~--~~~~~l~~~~~~~~~~~~il~tsr~~-  169 (216)
                      .+...    +..   .......+.......+.. ...++.-++|||+++.+  +.+..++..+..-.....+|++|.+. 
T Consensus        83 ~i~~g~~~dviEIdaas~~gVd~IReL~e~l~~~p~~g~~KV~IIDEah~Ls~~A~NALLKtLEEPp~~viFILaTte~~  162 (484)
T PRK14956         83 EITKGISSDVLEIDAASNRGIENIRELRDNVKFAPMGGKYKVYIIDEVHMLTDQSFNALLKTLEEPPAHIVFILATTEFH  162 (484)
T ss_pred             HHHccCCccceeechhhcccHHHHHHHHHHHHhhhhcCCCEEEEEechhhcCHHHHHHHHHHhhcCCCceEEEeecCChh
Confidence            11000    000   000000011111111111 12345679999999865  45777776665323455555555543 


Q ss_pred             hhhhcc-CCcceEEecCCChHHHHHHHhhhhcCCC--CCchhHhhhcc
Q 039455          170 HVLKGH-GVTNIYKVRGLDYVEALQLFHLKVSKGK--QPTDDRVELSK  214 (216)
Q Consensus       170 ~~~~~~-~~~~~~~l~~l~~~~~~~ll~~~~~~~~--~~~~~~~~l~~  214 (216)
                      .+...+ .....+.+++++.++..+++.+.+...+  ..++.+..|++
T Consensus       163 kI~~TI~SRCq~~~f~~ls~~~i~~~L~~i~~~Egi~~e~eAL~~Ia~  210 (484)
T PRK14956        163 KIPETILSRCQDFIFKKVPLSVLQDYSEKLCKIENVQYDQEGLFWIAK  210 (484)
T ss_pred             hccHHHHhhhheeeecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Confidence            232222 1236799999999999999988765444  34455555543

>PRK12323 DNA polymerase III subunits gamma and tau; Provisional

Probab=99.19  E-value=6.3e-10  Score=95.11  Aligned_cols=173  Identities=14%  Similarity=0.121  Sum_probs=98.8

Q ss_pred             CCcccccccchhHHHHHHHHHhcCCCCeeEEEEEecCCCcHHHHHHHHHHHhcCCCCc----eEeeccccccccccCchH
Q 039455           22 PSAVDGLVGIASRMEKMNGYLEAGLDDVRFIGICGMGGIGKTTLAKVLYNTLKDQFEA----SSFLANVREVSVTRGLVP   97 (216)
Q Consensus        22 ~~~~~~~vgR~~~~~~l~~~l~~~~~~~~~i~I~G~~GiGKTtL~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~   97 (216)
                      |..-+++||.+...+.|.+++..+ .-...++++|+.|+||||+++.++..+...-+.    ...-. +       ....
T Consensus        12 PqtFddVIGQe~vv~~L~~al~~g-RLpHA~LFtGP~GvGKTTLAriLAkaLnC~~p~~~~g~~~~P-C-------G~C~   82 (700)
T PRK12323         12 PRDFTTLVGQEHVVRALTHALEQQ-RLHHAYLFTGTRGVGKTTLSRILAKSLNCTGADGEGGITAQP-C-------GQCR   82 (700)
T ss_pred             CCcHHHHcCcHHHHHHHHHHHHhC-CCceEEEEECCCCCCHHHHHHHHHHHhcCCCccccccCCCCC-C-------cccH
Confidence            344567999999999999988754 234577999999999999999999876431100    00000 0       0000


Q ss_pred             HHHHHHHH----HHhhccccccchhhhHHHHHH----HhCCceEEEEEeCCCCH--HHHHHhhcCCCCCCCCcEEEEEeC
Q 039455           98 LQEQLLSE----VLMERNLIIWDVHKGINLIRW----RLCRKRVLVVLDDVDQL--EQLQALAGNHDWFGFGSRIIITTR  167 (216)
Q Consensus        98 ~~~~l~~~----~~~~~~~~~~~~~~~~~~l~~----~l~~~~~llvlDd~~~~--~~~~~l~~~~~~~~~~~~il~tsr  167 (216)
                      .+..+...    +...........+...+.+..    ...++..++|||+++.+  ..++.|+..+..-..++.+|++|.
T Consensus        83 sC~~I~aG~hpDviEIdAas~~gVDdIReLie~~~~~P~~gr~KViIIDEah~Ls~~AaNALLKTLEEPP~~v~FILaTt  162 (700)
T PRK12323         83 ACTEIDAGRFVDYIEMDAASNRGVDEMAQLLDKAVYAPTAGRFKVYMIDEVHMLTNHAFNAMLKTLEEPPEHVKFILATT  162 (700)
T ss_pred             HHHHHHcCCCCcceEecccccCCHHHHHHHHHHHHhchhcCCceEEEEEChHhcCHHHHHHHHHhhccCCCCceEEEEeC
Confidence            11111000    000000000111221221111    12345679999999865  556777776654345667776666


Q ss_pred             Cch-hhhcc-CCcceEEecCCChHHHHHHHhhhhcCCC
Q 039455          168 DEH-VLKGH-GVTNIYKVRGLDYVEALQLFHLKVSKGK  203 (216)
Q Consensus       168 ~~~-~~~~~-~~~~~~~l~~l~~~~~~~ll~~~~~~~~  203 (216)
                      +.. +...+ .....+.+++++.++..+.+.+.+...+
T Consensus       163 ep~kLlpTIrSRCq~f~f~~ls~eei~~~L~~Il~~Eg  200 (700)
T PRK12323        163 DPQKIPVTVLSRCLQFNLKQMPPGHIVSHLDAILGEEG  200 (700)
T ss_pred             ChHhhhhHHHHHHHhcccCCCChHHHHHHHHHHHHHcC
Confidence            543 32222 1237899999999999999887654433

>PRK14949 DNA polymerase III subunits gamma and tau; Provisional

Probab=99.19  E-value=6.8e-10  Score=97.78  Aligned_cols=170  Identities=14%  Similarity=0.128  Sum_probs=95.2

Q ss_pred             CcccccccchhHHHHHHHHHhcCCCCeeEEEEEecCCCcHHHHHHHHHHHhcCCC-----CceEeeccccccccc-cCch
Q 039455           23 SAVDGLVGIASRMEKMNGYLEAGLDDVRFIGICGMGGIGKTTLAKVLYNTLKDQF-----EASSFLANVREVSVT-RGLV   96 (216)
Q Consensus        23 ~~~~~~vgR~~~~~~l~~~l~~~~~~~~~i~I~G~~GiGKTtL~~~~~~~~~~~~-----~~~~~~~~~~~~~~~-~~~~   96 (216)
                      ..-.+++|.+..++.|.+++..+ .-...++++||+|+||||+|+.++..+....     ++...-.|..-.... ..+.
T Consensus        13 ~tFddIIGQe~Iv~~LknaI~~~-rl~HAyLFtGPpGtGKTTLARiLAk~Lnce~~~~~~pCg~C~sC~~i~~g~~~Dvi   91 (944)
T PRK14949         13 ATFEQMVGQSHVLHALTNALTQQ-RLHHAYLFTGTRGVGKTSLARLFAKGLNCEQGVTATPCGVCSSCVEIAQGRFVDLI   91 (944)
T ss_pred             CCHHHhcCcHHHHHHHHHHHHhC-CCCeEEEEECCCCCCHHHHHHHHHHhccCccCCCCCCCCCchHHHHHhcCCCceEE
Confidence            34567999999999999988753 2335568999999999999999998765321     110000000000000 0000


Q ss_pred             HHHHHHHHHHHhhccccccchhhhHHHHH-HHhCCceEEEEEeCCCCH--HHHHHhhcCCCCCCCCcEEEEEeCCch-hh
Q 039455           97 PLQEQLLSEVLMERNLIIWDVHKGINLIR-WRLCRKRVLVVLDDVDQL--EQLQALAGNHDWFGFGSRIIITTRDEH-VL  172 (216)
Q Consensus        97 ~~~~~l~~~~~~~~~~~~~~~~~~~~~l~-~~l~~~~~llvlDd~~~~--~~~~~l~~~~~~~~~~~~il~tsr~~~-~~  172 (216)
                      .+        .............+...+. ....++.-++|||+++.+  +.+..|+..+..-...+++|++|.+.. +.
T Consensus        92 Ei--------dAas~~kVDdIReLie~v~~~P~~gk~KViIIDEAh~LT~eAqNALLKtLEEPP~~vrFILaTTe~~kLl  163 (944)
T PRK14949         92 EV--------DAASRTKVDDTRELLDNVQYRPSRGRFKVYLIDEVHMLSRSSFNALLKTLEEPPEHVKFLLATTDPQKLP  163 (944)
T ss_pred             Ee--------ccccccCHHHHHHHHHHHHhhhhcCCcEEEEEechHhcCHHHHHHHHHHHhccCCCeEEEEECCCchhch
Confidence            00        0000000000111111111 112356679999999865  456666665543345566666665543 33


Q ss_pred             hcc-CCcceEEecCCChHHHHHHHhhhhcC
Q 039455          173 KGH-GVTNIYKVRGLDYVEALQLFHLKVSK  201 (216)
Q Consensus       173 ~~~-~~~~~~~l~~l~~~~~~~ll~~~~~~  201 (216)
                      ..+ .....+++++|+.++..+++...+-.
T Consensus       164 ~TIlSRCq~f~fkpLs~eEI~~~L~~il~~  193 (944)
T PRK14949        164 VTVLSRCLQFNLKSLTQDEIGTQLNHILTQ  193 (944)
T ss_pred             HHHHHhheEEeCCCCCHHHHHHHHHHHHHH
Confidence            221 22378999999999999999876533

>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B

Probab=99.19  E-value=8.6e-11  Score=82.07  Aligned_cols=114  Identities=22%  Similarity=0.250  Sum_probs=71.4

Q ss_pred             CeeEEEEEecCCCcHHHHHHHHHHHhcCC-----CCceEeeccccccccccCchHHHHHHHHHHHhhccccccchhhhHH
Q 039455           48 DVRFIGICGMGGIGKTTLAKVLYNTLKDQ-----FEASSFLANVREVSVTRGLVPLQEQLLSEVLMERNLIIWDVHKGIN  122 (216)
Q Consensus        48 ~~~~i~I~G~~GiGKTtL~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~  122 (216)
                      +.+.+.|+|++|+|||++++.++..+...     -..+.|+.+..    ......+...++..+...... ..+...+..
T Consensus         3 ~~~~~~i~G~~G~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~i~~~l~~~~~~-~~~~~~l~~   77 (131)
T PF13401_consen    3 SQRILVISGPPGSGKTTLIKRLARQLNAEAEIKNHPDVIYVNCPS----SRTPRDFAQEILEALGLPLKS-RQTSDELRS   77 (131)
T ss_dssp             ----EEEEE-TTSSHHHHHHHHHHHHHHHHHHCCCEEEEEEEHHH----HSSHHHHHHHHHHHHT-SSSS-TS-HHHHHH
T ss_pred             CCcccEEEcCCCCCHHHHHHHHHHHhHHhhhccCCCcEEEEEeCC----CCCHHHHHHHHHHHhCccccc-cCCHHHHHH
Confidence            45789999999999999999999876542     24455665322    336667777777776655433 234455556


Q ss_pred             HHHHHhCCc-eEEEEEeCCCCH-H--HHHHhhcCCCCCCCCcEEEEEeCC
Q 039455          123 LIRWRLCRK-RVLVVLDDVDQL-E--QLQALAGNHDWFGFGSRIIITTRD  168 (216)
Q Consensus       123 ~l~~~l~~~-~~llvlDd~~~~-~--~~~~l~~~~~~~~~~~~il~tsr~  168 (216)
                      .+.+.+... ..+|||||++.. +  .+..+...+.  ..+.++|++.+.
T Consensus        78 ~~~~~l~~~~~~~lviDe~~~l~~~~~l~~l~~l~~--~~~~~vvl~G~~  125 (131)
T PF13401_consen   78 LLIDALDRRRVVLLVIDEADHLFSDEFLEFLRSLLN--ESNIKVVLVGTP  125 (131)
T ss_dssp             HHHHHHHHCTEEEEEEETTHHHHTHHHHHHHHHHTC--SCBEEEEEEESS
T ss_pred             HHHHHHHhcCCeEEEEeChHhcCCHHHHHHHHHHHh--CCCCeEEEEECh
Confidence            677777654 469999999876 2  2333433222  566788888776

>PRK14088 dnaA chromosomal replication initiation protein; Provisional

Probab=99.18  E-value=5.6e-10  Score=93.26  Aligned_cols=166  Identities=15%  Similarity=0.131  Sum_probs=95.0

Q ss_pred             ccccchhHHH--HHHHHHhcCCCCeeEEEEEecCCCcHHHHHHHHHHHhcCCCC--ceEeeccccccccccCchHHHHHH
Q 039455           27 GLVGIASRME--KMNGYLEAGLDDVRFIGICGMGGIGKTTLAKVLYNTLKDQFE--ASSFLANVREVSVTRGLVPLQEQL  102 (216)
Q Consensus        27 ~~vgR~~~~~--~l~~~l~~~~~~~~~i~I~G~~GiGKTtL~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~l  102 (216)
                      +.+|-.....  ....+....+ ....+.|+|++|+|||+|++.+++.+.+..+  .+.|+. .         ..+...+
T Consensus       107 Fv~g~~n~~a~~~~~~~~~~~~-~~n~l~lyG~~G~GKTHLl~ai~~~l~~~~~~~~v~yi~-~---------~~f~~~~  175 (440)
T PRK14088        107 FVVGPGNSFAYHAALEVAKNPG-RYNPLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYIT-S---------EKFLNDL  175 (440)
T ss_pred             cccCCchHHHHHHHHHHHhCcC-CCCeEEEEcCCCCcHHHHHHHHHHHHHHhCCCCeEEEEE-H---------HHHHHHH
Confidence            3447655443  2333333222 2456999999999999999999998766543  344443 1         1223333


Q ss_pred             HHHHHhhccccccchhhhHHHHHHHhCCceEEEEEeCCCCH-------HHHHHhhcCCCCCCCCcEEEEEeC-Cchh---
Q 039455          103 LSEVLMERNLIIWDVHKGINLIRWRLCRKRVLVVLDDVDQL-------EQLQALAGNHDWFGFGSRIIITTR-DEHV---  171 (216)
Q Consensus       103 ~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~llvlDd~~~~-------~~~~~l~~~~~~~~~~~~il~tsr-~~~~---  171 (216)
                      ...+...      .    ...+......+.-+|+|||++..       +.+..++..+.  ..+..+|+||+ .+..   
T Consensus       176 ~~~~~~~------~----~~~f~~~~~~~~dvLlIDDi~~l~~~~~~q~elf~~~n~l~--~~~k~iIitsd~~p~~l~~  243 (440)
T PRK14088        176 VDSMKEG------K----LNEFREKYRKKVDVLLIDDVQFLIGKTGVQTELFHTFNELH--DSGKQIVICSDREPQKLSE  243 (440)
T ss_pred             HHHHhcc------c----HHHHHHHHHhcCCEEEEechhhhcCcHHHHHHHHHHHHHHH--HcCCeEEEECCCCHHHHHH
Confidence            3322111      1    11222233334568999999743       12222322222  23457888774 4322   


Q ss_pred             -----hhccCCcceEEecCCChHHHHHHHhhhhcCCC--CCchhHhhhccc
Q 039455          172 -----LKGHGVTNIYKVRGLDYVEALQLFHLKVSKGK--QPTDDRVELSKC  215 (216)
Q Consensus       172 -----~~~~~~~~~~~l~~l~~~~~~~ll~~~~~~~~--~~~~~~~~l~~~  215 (216)
                           .+++.....++++|.+.+...+++++.+...+  .+++.+..|++.
T Consensus       244 l~~rL~SR~~~gl~v~i~~pd~e~r~~IL~~~~~~~~~~l~~ev~~~Ia~~  294 (440)
T PRK14088        244 FQDRLVSRFQMGLVAKLEPPDEETRKKIARKMLEIEHGELPEEVLNFVAEN  294 (440)
T ss_pred             HHHHHhhHHhcCceEeeCCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHhc
Confidence                 23334556899999999999999998874333  455666666543

>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold

Probab=99.18  E-value=7.5e-10  Score=78.27  Aligned_cols=123  Identities=21%  Similarity=0.175  Sum_probs=70.8

Q ss_pred             ccchhHHHHHHHHHhcCCCCeeEEEEEecCCCcHHHHHHHHHHHhcCCCCceEeeccccccccccCchHHHHHHHHHHHh
Q 039455           29 VGIASRMEKMNGYLEAGLDDVRFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLANVREVSVTRGLVPLQEQLLSEVLM  108 (216)
Q Consensus        29 vgR~~~~~~l~~~l~~~~~~~~~i~I~G~~GiGKTtL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~  108 (216)
                      +||+..++.+...+...  ....+.|+|++|+|||++++.++..+......+.++.....    ..... ....... . 
T Consensus         1 ~~~~~~~~~i~~~~~~~--~~~~v~i~G~~G~GKT~l~~~i~~~~~~~~~~v~~~~~~~~----~~~~~-~~~~~~~-~-   71 (151)
T cd00009           1 VGQEEAIEALREALELP--PPKNLLLYGPPGTGKTTLARAIANELFRPGAPFLYLNASDL----LEGLV-VAELFGH-F-   71 (151)
T ss_pred             CchHHHHHHHHHHHhCC--CCCeEEEECCCCCCHHHHHHHHHHHhhcCCCCeEEEehhhh----hhhhH-HHHHhhh-h-
Confidence            47888999998887652  34789999999999999999999987543344445432111    00000 0000000 0 


Q ss_pred             hccccccchhhhHHHHHHHhCCceEEEEEeCCCCH-----HHHHHhhcCCCCC---CCCcEEEEEeCCch
Q 039455          109 ERNLIIWDVHKGINLIRWRLCRKRVLVVLDDVDQL-----EQLQALAGNHDWF---GFGSRIIITTRDEH  170 (216)
Q Consensus       109 ~~~~~~~~~~~~~~~l~~~l~~~~~llvlDd~~~~-----~~~~~l~~~~~~~---~~~~~il~tsr~~~  170 (216)
                                ............++.+|++||++..     ..+..++..+...   ..++.+|+|++...
T Consensus        72 ----------~~~~~~~~~~~~~~~~lilDe~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ii~~~~~~~  131 (151)
T cd00009          72 ----------LVRLLFELAEKAKPGVLFIDEIDSLSRGAQNALLRVLETLNDLRIDRENVRVIGATNRPL  131 (151)
T ss_pred             ----------hHhHHHHhhccCCCeEEEEeChhhhhHHHHHHHHHHHHhcCceeccCCCeEEEEecCccc
Confidence                      0111112223346789999999854     2233333333211   35678888888654

The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.

>PRK13342 recombination factor protein RarA; Reviewed

Probab=99.18  E-value=3.6e-10  Score=93.91  Aligned_cols=146  Identities=23%  Similarity=0.364  Sum_probs=86.9

Q ss_pred             CCcccccccchhHHHH---HHHHHhcCCCCeeEEEEEecCCCcHHHHHHHHHHHhcCCCCceEeeccccccccccCchHH
Q 039455           22 PSAVDGLVGIASRMEK---MNGYLEAGLDDVRFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLANVREVSVTRGLVPL   98 (216)
Q Consensus        22 ~~~~~~~vgR~~~~~~---l~~~l~~~~~~~~~i~I~G~~GiGKTtL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   98 (216)
                      |....+++|++..+..   |..++...  ....++|+||+|+||||||+.+++.....|.   .+....     ... ..
T Consensus         8 P~~l~d~vGq~~~v~~~~~L~~~i~~~--~~~~ilL~GppGtGKTtLA~~ia~~~~~~~~---~l~a~~-----~~~-~~   76 (413)
T PRK13342          8 PKTLDEVVGQEHLLGPGKPLRRMIEAG--RLSSMILWGPPGTGKTTLARIIAGATDAPFE---ALSAVT-----SGV-KD   76 (413)
T ss_pred             CCCHHHhcCcHHHhCcchHHHHHHHcC--CCceEEEECCCCCCHHHHHHHHHHHhCCCEE---EEeccc-----ccH-HH
Confidence            3456679999998776   77777653  3468899999999999999999987654321   111000     000 11


Q ss_pred             HHHHHHHHHhhccccccchhhhHHHHHH-HhCCceEEEEEeCCCCH--HHHHHhhcCCCCCCCCcEEEE-E-eCCchh--
Q 039455           99 QEQLLSEVLMERNLIIWDVHKGINLIRW-RLCRKRVLVVLDDVDQL--EQLQALAGNHDWFGFGSRIII-T-TRDEHV--  171 (216)
Q Consensus        99 ~~~l~~~~~~~~~~~~~~~~~~~~~l~~-~l~~~~~llvlDd~~~~--~~~~~l~~~~~~~~~~~~il~-t-sr~~~~--  171 (216)
                      ...++.                  .... ...++..+|+|||++..  .+.+.++..+.   .+..+++ + |.++..  
T Consensus        77 ir~ii~------------------~~~~~~~~g~~~vL~IDEi~~l~~~~q~~LL~~le---~~~iilI~att~n~~~~l  135 (413)
T PRK13342         77 LREVIE------------------EARQRRSAGRRTILFIDEIHRFNKAQQDALLPHVE---DGTITLIGATTENPSFEV  135 (413)
T ss_pred             HHHHHH------------------HHHHhhhcCCceEEEEechhhhCHHHHHHHHHHhh---cCcEEEEEeCCCChhhhc
Confidence            111111                  1111 11346789999999865  33444444433   2333333 3 333321  


Q ss_pred             hh-ccCCcceEEecCCChHHHHHHHhhhh
Q 039455          172 LK-GHGVTNIYKVRGLDYVEALQLFHLKV  199 (216)
Q Consensus       172 ~~-~~~~~~~~~l~~l~~~~~~~ll~~~~  199 (216)
                      .. .......+.+++++.++..+++.+..
T Consensus       136 ~~aL~SR~~~~~~~~ls~e~i~~lL~~~l  164 (413)
T PRK13342        136 NPALLSRAQVFELKPLSEEDIEQLLKRAL  164 (413)
T ss_pred             cHHHhccceeeEeCCCCHHHHHHHHHHHH
Confidence            11 11223789999999999999998765

>PRK14087 dnaA chromosomal replication initiation protein; Provisional

Probab=99.17  E-value=6.3e-10  Score=93.10  Aligned_cols=167  Identities=15%  Similarity=0.207  Sum_probs=94.4

Q ss_pred             ccccchhHH--HHHHHHHhcCCCCeeEEEEEecCCCcHHHHHHHHHHHhcCCCC--ceEeeccccccccccCchHHHHHH
Q 039455           27 GLVGIASRM--EKMNGYLEAGLDDVRFIGICGMGGIGKTTLAKVLYNTLKDQFE--ASSFLANVREVSVTRGLVPLQEQL  102 (216)
Q Consensus        27 ~~vgR~~~~--~~l~~~l~~~~~~~~~i~I~G~~GiGKTtL~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~l  102 (216)
                      +.+|.....  .....+....+.....+.|+|+.|+|||+|++.+++.+....+  .+.++.          ...+...+
T Consensus       117 Fv~g~~n~~A~~aa~~~a~~~~~~~npl~i~G~~G~GKTHLl~Ai~~~l~~~~~~~~v~yv~----------~~~f~~~~  186 (450)
T PRK14087        117 FVIGSSNEQAFIAVQTVSKNPGISYNPLFIYGESGMGKTHLLKAAKNYIESNFSDLKVSYMS----------GDEFARKA  186 (450)
T ss_pred             ccCCCcHHHHHHHHHHHHhCcCcccCceEEECCCCCcHHHHHHHHHHHHHHhCCCCeEEEEE----------HHHHHHHH
Confidence            455765542  2233333333333467999999999999999999987654322  233332          12233333


Q ss_pred             HHHHHhhccccccchhhhHHHHHHHhCCceEEEEEeCCCCH-------HHHHHhhcCCCCCCCCcEEEEEeCCc------
Q 039455          103 LSEVLMERNLIIWDVHKGINLIRWRLCRKRVLVVLDDVDQL-------EQLQALAGNHDWFGFGSRIIITTRDE------  169 (216)
Q Consensus       103 ~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~llvlDd~~~~-------~~~~~l~~~~~~~~~~~~il~tsr~~------  169 (216)
                      ...+....        .....+...+. +.-+|+|||++..       +.+..++..+.  ..+..+|+|+...      
T Consensus       187 ~~~l~~~~--------~~~~~~~~~~~-~~dvLiIDDiq~l~~k~~~~e~lf~l~N~~~--~~~k~iIltsd~~P~~l~~  255 (450)
T PRK14087        187 VDILQKTH--------KEIEQFKNEIC-QNDVLIIDDVQFLSYKEKTNEIFFTIFNNFI--ENDKQLFFSSDKSPELLNG  255 (450)
T ss_pred             HHHHHHhh--------hHHHHHHHHhc-cCCEEEEeccccccCCHHHHHHHHHHHHHHH--HcCCcEEEECCCCHHHHhh
Confidence            33322110        11122333232 3348999999643       22333333322  3455788887643      


Q ss_pred             ---hhhhccCCcceEEecCCChHHHHHHHhhhhcCCC----CCchhHhhhcc
Q 039455          170 ---HVLKGHGVTNIYKVRGLDYVEALQLFHLKVSKGK----QPTDDRVELSK  214 (216)
Q Consensus       170 ---~~~~~~~~~~~~~l~~l~~~~~~~ll~~~~~~~~----~~~~~~~~l~~  214 (216)
                         .+.+++...-.+++++++.++..+++++.+-..+    .+++.++.|+.
T Consensus       256 l~~rL~SR~~~Gl~~~L~~pd~e~r~~iL~~~~~~~gl~~~l~~evl~~Ia~  307 (450)
T PRK14087        256 FDNRLITRFNMGLSIAIQKLDNKTATAIIKKEIKNQNIKQEVTEEAINFISN  307 (450)
T ss_pred             ccHHHHHHHhCCceeccCCcCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHH
Confidence               2344445677899999999999999998774332    34455555543

>PRK03992 proteasome-activating nucleotidase; Provisional

Probab=99.17  E-value=1e-09  Score=90.43  Aligned_cols=167  Identities=19%  Similarity=0.236  Sum_probs=96.0

Q ss_pred             cccccccchhHHHHHHHHHhcC-----------CCCeeEEEEEecCCCcHHHHHHHHHHHhcCCCCceEeeccccccccc
Q 039455           24 AVDGLVGIASRMEKMNGYLEAG-----------LDDVRFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLANVREVSVT   92 (216)
Q Consensus        24 ~~~~~vgR~~~~~~l~~~l~~~-----------~~~~~~i~I~G~~GiGKTtL~~~~~~~~~~~~~~~~~~~~~~~~~~~   92 (216)
                      ....+.|++++++++...+...           -...+.++++||+|+|||++|+.+++.....|  .. +. .      
T Consensus       129 ~~~di~Gl~~~~~~l~~~i~~pl~~~~~~~~~g~~~p~gvLL~GppGtGKT~lAkaia~~~~~~~--i~-v~-~------  198 (389)
T PRK03992        129 TYEDIGGLEEQIREVREAVELPLKKPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHETNATF--IR-VV-G------  198 (389)
T ss_pred             CHHHhCCcHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCceEEECCCCCChHHHHHHHHHHhCCCE--EE-ee-h------
Confidence            4457889999999998876421           12356799999999999999999998764321  11 11 0      


Q ss_pred             cCchHHHHHHHHHHHhhccccccchhhhHHHHHHHhCCceEEEEEeCCCCHH------------H----HHHhhcCCCCC
Q 039455           93 RGLVPLQEQLLSEVLMERNLIIWDVHKGINLIRWRLCRKRVLVVLDDVDQLE------------Q----LQALAGNHDWF  156 (216)
Q Consensus        93 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~llvlDd~~~~~------------~----~~~l~~~~~~~  156 (216)
                             ..+.....+      .........+...-...+.+|+|||++.+.            .    +..++..+...
T Consensus       199 -------~~l~~~~~g------~~~~~i~~~f~~a~~~~p~IlfiDEiD~l~~~r~~~~~~~~~~~~~~l~~lL~~ld~~  265 (389)
T PRK03992        199 -------SELVQKFIG------EGARLVRELFELAREKAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAEMDGF  265 (389)
T ss_pred             -------HHHhHhhcc------chHHHHHHHHHHHHhcCCeEEEEechhhhhcccccCCCCccHHHHHHHHHHHHhcccc
Confidence                   111111000      001111122222233567899999997541            1    22233222211


Q ss_pred             --CCCcEEEEEeCCchhhhc--c---CCcceEEecCCChHHHHHHHhhhhcCCCC-CchhHhhhc
Q 039455          157 --GFGSRIIITTRDEHVLKG--H---GVTNIYKVRGLDYVEALQLFHLKVSKGKQ-PTDDRVELS  213 (216)
Q Consensus       157 --~~~~~il~tsr~~~~~~~--~---~~~~~~~l~~l~~~~~~~ll~~~~~~~~~-~~~~~~~l~  213 (216)
                        ..+..+|.||........  +   ..+..+++++.+.++..++|+.+...... ..-++..|+
T Consensus       266 ~~~~~v~VI~aTn~~~~ld~allRpgRfd~~I~v~~P~~~~R~~Il~~~~~~~~~~~~~~~~~la  330 (389)
T PRK03992        266 DPRGNVKIIAATNRIDILDPAILRPGRFDRIIEVPLPDEEGRLEILKIHTRKMNLADDVDLEELA  330 (389)
T ss_pred             CCCCCEEEEEecCChhhCCHHHcCCccCceEEEECCCCHHHHHHHHHHHhccCCCCCcCCHHHHH
Confidence              234567777765543221  1   23568999999999999999987654432 223444444

>PTZ00202 tuzin; Provisional

Probab=99.16  E-value=2.1e-09  Score=87.75  Aligned_cols=168  Identities=14%  Similarity=0.119  Sum_probs=99.8

Q ss_pred             CCCCcccccccchhHHHHHHHHHhcC-CCCeeEEEEEecCCCcHHHHHHHHHHHhcCCCCceEeeccccccccccCchHH
Q 039455           20 TFPSAVDGLVGIASRMEKMNGYLEAG-LDDVRFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLANVREVSVTRGLVPL   98 (216)
Q Consensus        20 ~~~~~~~~~vgR~~~~~~l~~~l~~~-~~~~~~i~I~G~~GiGKTtL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   98 (216)
                      ..|+.+..|+||++++++|...|... ......++|+|++|+|||||++.+.....    ...++.+..      +..++
T Consensus       256 ~lPa~~~~FVGReaEla~Lr~VL~~~d~~~privvLtG~~G~GKTTLlR~~~~~l~----~~qL~vNpr------g~eEl  325 (550)
T PTZ00202        256 SAPAVIRQFVSREAEESWVRQVLRRLDTAHPRIVVFTGFRGCGKSSLCRSAVRKEG----MPAVFVDVR------GTEDT  325 (550)
T ss_pred             CCCCCccCCCCcHHHHHHHHHHHhccCCCCceEEEEECCCCCCHHHHHHHHHhcCC----ceEEEECCC------CHHHH
Confidence            45677889999999999999998743 23346999999999999999999997654    234443322      44677


Q ss_pred             HHHHHHHHHhhccccccch-hhhHHHHHHHh-C-CceEEEEEe--CCCCHHHH-HHhhcCCCCCCCCcEEEEEeCCchh-
Q 039455           99 QEQLLSEVLMERNLIIWDV-HKGINLIRWRL-C-RKRVLVVLD--DVDQLEQL-QALAGNHDWFGFGSRIIITTRDEHV-  171 (216)
Q Consensus        99 ~~~l~~~~~~~~~~~~~~~-~~~~~~l~~~l-~-~~~~llvlD--d~~~~~~~-~~l~~~~~~~~~~~~il~tsr~~~~-  171 (216)
                      +..++.++.........+. ....+.+.... . ++..+|||-  +=.++.-+ .+.. .+..-..-|.|++---.+.+ 
T Consensus       326 Lr~LL~ALGV~p~~~k~dLLrqIqeaLl~~~~e~GrtPVLII~lreg~~l~rvyne~v-~la~drr~ch~v~evpleslt  404 (550)
T PTZ00202        326 LRSVVKALGVPNVEACGDLLDFISEACRRAKKMNGETPLLVLKLREGSSLQRVYNEVV-ALACDRRLCHVVIEVPLESLT  404 (550)
T ss_pred             HHHHHHHcCCCCcccHHHHHHHHHHHHHHHHHhCCCCEEEEEEecCCCcHHHHHHHHH-HHHccchhheeeeeehHhhcc
Confidence            7777777765322111111 22222333322 2 445555544  44444322 2221 11111234667654443322 


Q ss_pred             -hh-ccCCcceEEecCCChHHHHHHHhhh
Q 039455          172 -LK-GHGVTNIYKVRGLDYVEALQLFHLK  198 (216)
Q Consensus       172 -~~-~~~~~~~~~l~~l~~~~~~~ll~~~  198 (216)
                       .+ .+.....+-+++|+.+||.++.+..
T Consensus       405 ~~~~~lprldf~~vp~fsr~qaf~y~~h~  433 (550)
T PTZ00202        405 IANTLLPRLDFYLVPNFSRSQAFAYTQHA  433 (550)
T ss_pred             hhcccCccceeEecCCCCHHHHHHHHhhc
Confidence             11 1224578999999999999988654

>PRK14086 dnaA chromosomal replication initiation protein; Provisional

Probab=99.16  E-value=7e-10  Score=94.62  Aligned_cols=165  Identities=13%  Similarity=0.187  Sum_probs=96.4

Q ss_pred             ccccchhHHH--HHHHHHhcCCCCeeEEEEEecCCCcHHHHHHHHHHHhcCCC--CceEeeccccccccccCchHHHHHH
Q 039455           27 GLVGIASRME--KMNGYLEAGLDDVRFIGICGMGGIGKTTLAKVLYNTLKDQF--EASSFLANVREVSVTRGLVPLQEQL  102 (216)
Q Consensus        27 ~~vgR~~~~~--~l~~~l~~~~~~~~~i~I~G~~GiGKTtL~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~l  102 (216)
                      +++|-...+.  .+..+..........++|+|+.|+|||+|+..+++.+...+  ..+.|+.          ...+...+
T Consensus       290 FvvG~sN~~A~aaa~avae~~~~~~NpL~LyG~sGsGKTHLL~AIa~~a~~~~~g~~V~Yit----------aeef~~el  359 (617)
T PRK14086        290 FVIGASNRFAHAAAVAVAEAPAKAYNPLFIYGESGLGKTHLLHAIGHYARRLYPGTRVRYVS----------SEEFTNEF  359 (617)
T ss_pred             hcCCCccHHHHHHHHHHHhCccccCCcEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEee----------HHHHHHHH
Confidence            4456665533  33444433222334699999999999999999999876533  2345543          11222233


Q ss_pred             HHHHHhhccccccchhhhHHHHHHHhCCceEEEEEeCCCCH-------HHHHHhhcCCCCCCCCcEEEEEeCCc------
Q 039455          103 LSEVLMERNLIIWDVHKGINLIRWRLCRKRVLVVLDDVDQL-------EQLQALAGNHDWFGFGSRIIITTRDE------  169 (216)
Q Consensus       103 ~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~llvlDd~~~~-------~~~~~l~~~~~~~~~~~~il~tsr~~------  169 (216)
                      ...+...          ....+.+.+.+ .-+|+|||++..       +.+..++..+.  ..+..||+||+..      
T Consensus       360 ~~al~~~----------~~~~f~~~y~~-~DLLlIDDIq~l~gke~tqeeLF~l~N~l~--e~gk~IIITSd~~P~eL~~  426 (617)
T PRK14086        360 INSIRDG----------KGDSFRRRYRE-MDILLVDDIQFLEDKESTQEEFFHTFNTLH--NANKQIVLSSDRPPKQLVT  426 (617)
T ss_pred             HHHHHhc----------cHHHHHHHhhc-CCEEEEehhccccCCHHHHHHHHHHHHHHH--hcCCCEEEecCCChHhhhh
Confidence            2222111          11122222222 348999999644       22333333322  3456788888753      


Q ss_pred             ---hhhhccCCcceEEecCCChHHHHHHHhhhhcCCC--CCchhHhhhcc
Q 039455          170 ---HVLKGHGVTNIYKVRGLDYVEALQLFHLKVSKGK--QPTDDRVELSK  214 (216)
Q Consensus       170 ---~~~~~~~~~~~~~l~~l~~~~~~~ll~~~~~~~~--~~~~~~~~l~~  214 (216)
                         .+.+++.....++|++.+.+...++|++++...+  .+++.++.|+.
T Consensus       427 l~~rL~SRf~~GLvv~I~~PD~EtR~aIL~kka~~r~l~l~~eVi~yLa~  476 (617)
T PRK14086        427 LEDRLRNRFEWGLITDVQPPELETRIAILRKKAVQEQLNAPPEVLEFIAS  476 (617)
T ss_pred             ccHHHHhhhhcCceEEcCCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHH
Confidence               3455556778999999999999999998875444  44555555554

>PRK00440 rfc replication factor C small subunit; Reviewed

Probab=99.15  E-value=1.6e-09  Score=87.02  Aligned_cols=170  Identities=18%  Similarity=0.241  Sum_probs=95.7

Q ss_pred             CcccccccchhHHHHHHHHHhcCCCCeeEEEEEecCCCcHHHHHHHHHHHhcCCCCceEeecc-ccccccccCchHHHHH
Q 039455           23 SAVDGLVGIASRMEKMNGYLEAGLDDVRFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLAN-VREVSVTRGLVPLQEQ  101 (216)
Q Consensus        23 ~~~~~~vgR~~~~~~l~~~l~~~~~~~~~i~I~G~~GiGKTtL~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~  101 (216)
                      ..-.+++|++..++.+..++..+  ..+.+.++|++|+|||++++.++..+........++.. ...   .... .....
T Consensus        14 ~~~~~~~g~~~~~~~l~~~i~~~--~~~~~ll~G~~G~GKt~~~~~l~~~l~~~~~~~~~i~~~~~~---~~~~-~~~~~   87 (319)
T PRK00440         14 RTLDEIVGQEEIVERLKSYVKEK--NMPHLLFAGPPGTGKTTAALALARELYGEDWRENFLELNASD---ERGI-DVIRN   87 (319)
T ss_pred             CcHHHhcCcHHHHHHHHHHHhCC--CCCeEEEECCCCCCHHHHHHHHHHHHcCCccccceEEecccc---ccch-HHHHH
Confidence            44567999999999999998753  23468999999999999999999876432111111110 000   0111 11111


Q ss_pred             HHHHHHhhccccccchhhhHHHHHHHhCCceEEEEEeCCCCHH--HHHHhhcCCCCCCCCcEEEEEeCCch-hhhcc-CC
Q 039455          102 LLSEVLMERNLIIWDVHKGINLIRWRLCRKRVLVVLDDVDQLE--QLQALAGNHDWFGFGSRIIITTRDEH-VLKGH-GV  177 (216)
Q Consensus       102 l~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~llvlDd~~~~~--~~~~l~~~~~~~~~~~~il~tsr~~~-~~~~~-~~  177 (216)
                      .+..+....               ......+-++++|+++...  ....+...+......+.+|+++.... +...+ ..
T Consensus        88 ~i~~~~~~~---------------~~~~~~~~vviiDe~~~l~~~~~~~L~~~le~~~~~~~lIl~~~~~~~l~~~l~sr  152 (319)
T PRK00440         88 KIKEFARTA---------------PVGGAPFKIIFLDEADNLTSDAQQALRRTMEMYSQNTRFILSCNYSSKIIDPIQSR  152 (319)
T ss_pred             HHHHHHhcC---------------CCCCCCceEEEEeCcccCCHHHHHHHHHHHhcCCCCCeEEEEeCCccccchhHHHH
Confidence            111100000               0011235699999997552  23333333332234566777765432 21111 12


Q ss_pred             cceEEecCCChHHHHHHHhhhhcCCC--CCchhHhhhc
Q 039455          178 TNIYKVRGLDYVEALQLFHLKVSKGK--QPTDDRVELS  213 (216)
Q Consensus       178 ~~~~~l~~l~~~~~~~ll~~~~~~~~--~~~~~~~~l~  213 (216)
                      ...+++++++.++...++...+...+  .+++.++.|+
T Consensus       153 ~~~~~~~~l~~~ei~~~l~~~~~~~~~~i~~~al~~l~  190 (319)
T PRK00440        153 CAVFRFSPLKKEAVAERLRYIAENEGIEITDDALEAIY  190 (319)
T ss_pred             hheeeeCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHH
Confidence            45799999999999999988764444  3444555544

>PRK00149 dnaA chromosomal replication initiation protein; Reviewed

Probab=99.14  E-value=9.9e-10  Score=92.34  Aligned_cols=168  Identities=13%  Similarity=0.155  Sum_probs=95.0

Q ss_pred             ccccchhHHH--HHHHHHhcCCCCeeEEEEEecCCCcHHHHHHHHHHHhcCCCCc--eEeeccccccccccCchHHHHHH
Q 039455           27 GLVGIASRME--KMNGYLEAGLDDVRFIGICGMGGIGKTTLAKVLYNTLKDQFEA--SSFLANVREVSVTRGLVPLQEQL  102 (216)
Q Consensus        27 ~~vgR~~~~~--~l~~~l~~~~~~~~~i~I~G~~GiGKTtL~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~l  102 (216)
                      +.+|......  ....+....+.....+.|+|++|+|||+|++.+++.+.++++.  +.++. .         ..+...+
T Consensus       124 fv~g~~n~~a~~~~~~~~~~~~~~~~~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~v~yi~-~---------~~~~~~~  193 (450)
T PRK00149        124 FVVGKSNRLAHAAALAVAENPGKAYNPLFIYGGVGLGKTHLLHAIGNYILEKNPNAKVVYVT-S---------EKFTNDF  193 (450)
T ss_pred             cccCCCcHHHHHHHHHHHhCcCccCCeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEEE-H---------HHHHHHH
Confidence            3456555432  3344444333334679999999999999999999988766443  34443 1         1122223


Q ss_pred             HHHHHhhccccccchhhhHHHHHHHhCCceEEEEEeCCCCHH----HHHHhhcCCCCC-CCCcEEEEEeCCc--------
Q 039455          103 LSEVLMERNLIIWDVHKGINLIRWRLCRKRVLVVLDDVDQLE----QLQALAGNHDWF-GFGSRIIITTRDE--------  169 (216)
Q Consensus       103 ~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~llvlDd~~~~~----~~~~l~~~~~~~-~~~~~il~tsr~~--------  169 (216)
                      ...+...      .    ...+...+. +.-+|+|||++...    ....++..+... ..+..+++|+...        
T Consensus       194 ~~~~~~~------~----~~~~~~~~~-~~dlLiiDDi~~l~~~~~~~~~l~~~~n~l~~~~~~iiits~~~p~~l~~l~  262 (450)
T PRK00149        194 VNALRNN------T----MEEFKEKYR-SVDVLLIDDIQFLAGKERTQEEFFHTFNALHEAGKQIVLTSDRPPKELPGLE  262 (450)
T ss_pred             HHHHHcC------c----HHHHHHHHh-cCCEEEEehhhhhcCCHHHHHHHHHHHHHHHHCCCcEEEECCCCHHHHHHHH
Confidence            2222110      1    122222222 34489999996431    112222222111 2345577777643        


Q ss_pred             -hhhhccCCcceEEecCCChHHHHHHHhhhhcCCC--CCchhHhhhccc
Q 039455          170 -HVLKGHGVTNIYKVRGLDYVEALQLFHLKVSKGK--QPTDDRVELSKC  215 (216)
Q Consensus       170 -~~~~~~~~~~~~~l~~l~~~~~~~ll~~~~~~~~--~~~~~~~~l~~~  215 (216)
                       .+.+++.....+++++.+.++..+++++.+...+  .+++.++.|+..
T Consensus       263 ~~l~SRl~~gl~v~i~~pd~~~r~~il~~~~~~~~~~l~~e~l~~ia~~  311 (450)
T PRK00149        263 ERLRSRFEWGLTVDIEPPDLETRIAILKKKAEEEGIDLPDEVLEFIAKN  311 (450)
T ss_pred             HHHHhHhcCCeeEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHcC
Confidence             1234444557899999999999999998875433  456666666653

>PRK14962 DNA polymerase III subunits gamma and tau; Provisional

Probab=99.14  E-value=2.1e-09  Score=90.29  Aligned_cols=182  Identities=15%  Similarity=0.106  Sum_probs=97.4

Q ss_pred             CCcccccccchhHHHHHHHHHhcCCCCeeEEEEEecCCCcHHHHHHHHHHHhcCCCCceEeeccccccccccCchHHHHH
Q 039455           22 PSAVDGLVGIASRMEKMNGYLEAGLDDVRFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLANVREVSVTRGLVPLQEQ  101 (216)
Q Consensus        22 ~~~~~~~vgR~~~~~~l~~~l~~~~~~~~~i~I~G~~GiGKTtL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  101 (216)
                      |..-.+++|.+...+.|...+..+ .-...+.++||+|+||||+|+.++..+...-. ..+.. +.       ....+..
T Consensus        10 P~~~~divGq~~i~~~L~~~i~~~-~l~~~~Lf~GPpGtGKTTlA~~lA~~l~~~~~-~~~~p-c~-------~c~~c~~   79 (472)
T PRK14962         10 PKTFSEVVGQDHVKKLIINALKKN-SISHAYIFAGPRGTGKTTVARILAKSLNCENR-KGVEP-CN-------ECRACRS   79 (472)
T ss_pred             CCCHHHccCcHHHHHHHHHHHHcC-CCCeEEEEECCCCCCHHHHHHHHHHHhccccC-CCCCC-Cc-------ccHHHHH
Confidence            344567999999888888877654 23356899999999999999999987542100 00000 00       0000000


Q ss_pred             HHHHH---Hhhcccc-ccchhhhHHHHHH-----HhCCceEEEEEeCCCCH--HHHHHhhcCCCCCCCCcEEEEEeCCc-
Q 039455          102 LLSEV---LMERNLI-IWDVHKGINLIRW-----RLCRKRVLVVLDDVDQL--EQLQALAGNHDWFGFGSRIIITTRDE-  169 (216)
Q Consensus       102 l~~~~---~~~~~~~-~~~~~~~~~~l~~-----~l~~~~~llvlDd~~~~--~~~~~l~~~~~~~~~~~~il~tsr~~-  169 (216)
                      +...-   ....+.. ....+... .+.+     ...++.-++|+|+++..  +....++..+........++++|.++ 
T Consensus        80 i~~g~~~dv~el~aa~~~gid~iR-~i~~~~~~~p~~~~~kVvIIDE~h~Lt~~a~~~LLk~LE~p~~~vv~Ilattn~~  158 (472)
T PRK14962         80 IDEGTFMDVIELDAASNRGIDEIR-KIRDAVGYRPMEGKYKVYIIDEVHMLTKEAFNALLKTLEEPPSHVVFVLATTNLE  158 (472)
T ss_pred             HhcCCCCccEEEeCcccCCHHHHH-HHHHHHhhChhcCCeEEEEEEChHHhHHHHHHHHHHHHHhCCCcEEEEEEeCChH
Confidence            00000   0000000 00011111 1111     12245679999999865  33455555544323344445555443 


Q ss_pred             hhhhcc-CCcceEEecCCChHHHHHHHhhhhcCCC--CCchhHhhhcc
Q 039455          170 HVLKGH-GVTNIYKVRGLDYVEALQLFHLKVSKGK--QPTDDRVELSK  214 (216)
Q Consensus       170 ~~~~~~-~~~~~~~l~~l~~~~~~~ll~~~~~~~~--~~~~~~~~l~~  214 (216)
                      .+...+ .....+++++++.++....+.+.+...+  .+++.+..|++
T Consensus       159 kl~~~L~SR~~vv~f~~l~~~el~~~L~~i~~~egi~i~~eal~~Ia~  206 (472)
T PRK14962        159 KVPPTIISRCQVIEFRNISDELIIKRLQEVAEAEGIEIDREALSFIAK  206 (472)
T ss_pred             hhhHHHhcCcEEEEECCccHHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Confidence            222222 2347899999999999999988764333  44455665553

>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]

Probab=99.14  E-value=1e-09  Score=89.48  Aligned_cols=168  Identities=15%  Similarity=0.125  Sum_probs=105.0

Q ss_pred             ccccccchhHHHHHHH--HHhcCCCCeeEEEEEecCCCcHHHHHHHHHHHhcCCCCceEeeccccccccccCchHHHHHH
Q 039455           25 VDGLVGIASRMEKMNG--YLEAGLDDVRFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLANVREVSVTRGLVPLQEQL  102 (216)
Q Consensus        25 ~~~~vgR~~~~~~l~~--~l~~~~~~~~~i~I~G~~GiGKTtL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  102 (216)
                      ..+.+|-......-..  +-..++.....+.|+|+.|.|||+|++++++...+..+...++....        ..+...+
T Consensus        87 dnFv~g~~N~~A~aa~~~va~~~g~~~nplfi~G~~GlGKTHLl~Aign~~~~~~~~a~v~y~~s--------e~f~~~~  158 (408)
T COG0593          87 DNFVVGPSNRLAYAAAKAVAENPGGAYNPLFIYGGVGLGKTHLLQAIGNEALANGPNARVVYLTS--------EDFTNDF  158 (408)
T ss_pred             hheeeCCchHHHHHHHHHHHhccCCcCCcEEEECCCCCCHHHHHHHHHHHHHhhCCCceEEeccH--------HHHHHHH
Confidence            3456677666654322  22333335789999999999999999999998888877655554111        1233333


Q ss_pred             HHHHHhhccccccchhhhHHHHHHHhCCceEEEEEeCCCCH-------HHHHHhhcCCCCCCCCcEEEEEeCCc------
Q 039455          103 LSEVLMERNLIIWDVHKGINLIRWRLCRKRVLVVLDDVDQL-------EQLQALAGNHDWFGFGSRIIITTRDE------  169 (216)
Q Consensus       103 ~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~llvlDd~~~~-------~~~~~l~~~~~~~~~~~~il~tsr~~------  169 (216)
                      +..+...          ....+++..  .--++++||++..       +.+..++..+.  ..+..||+|++..      
T Consensus       159 v~a~~~~----------~~~~Fk~~y--~~dlllIDDiq~l~gk~~~qeefFh~FN~l~--~~~kqIvltsdr~P~~l~~  224 (408)
T COG0593         159 VKALRDN----------EMEKFKEKY--SLDLLLIDDIQFLAGKERTQEEFFHTFNALL--ENGKQIVLTSDRPPKELNG  224 (408)
T ss_pred             HHHHHhh----------hHHHHHHhh--ccCeeeechHhHhcCChhHHHHHHHHHHHHH--hcCCEEEEEcCCCchhhcc
Confidence            3332221          123333333  3338999999643       23344444333  3455899988642      


Q ss_pred             ---hhhhccCCcceEEecCCChHHHHHHHhhhhcCCC--CCchhHhhhcc
Q 039455          170 ---HVLKGHGVTNIYKVRGLDYVEALQLFHLKVSKGK--QPTDDRVELSK  214 (216)
Q Consensus       170 ---~~~~~~~~~~~~~l~~l~~~~~~~ll~~~~~~~~--~~~~~~~~l~~  214 (216)
                         .+.+++...-.+++.|++.+...+++++.+...+  .+++...-|+.
T Consensus       225 ~~~rL~SR~~~Gl~~~I~~Pd~e~r~aiL~kka~~~~~~i~~ev~~~la~  274 (408)
T COG0593         225 LEDRLRSRLEWGLVVEIEPPDDETRLAILRKKAEDRGIEIPDEVLEFLAK  274 (408)
T ss_pred             ccHHHHHHHhceeEEeeCCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHH
Confidence               4456666778999999999999999999764444  45555554443

>PRK14951 DNA polymerase III subunits gamma and tau; Provisional

Probab=99.14  E-value=2.6e-09  Score=91.98  Aligned_cols=182  Identities=14%  Similarity=0.109  Sum_probs=100.2

Q ss_pred             CcccccccchhHHHHHHHHHhcCCCCeeEEEEEecCCCcHHHHHHHHHHHhcCCCC----ceEeeccccccccccCchHH
Q 039455           23 SAVDGLVGIASRMEKMNGYLEAGLDDVRFIGICGMGGIGKTTLAKVLYNTLKDQFE----ASSFLANVREVSVTRGLVPL   98 (216)
Q Consensus        23 ~~~~~~vgR~~~~~~l~~~l~~~~~~~~~i~I~G~~GiGKTtL~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~   98 (216)
                      ..-++++|.+..++.|.+++..+ .-...+.++|+.|+||||+++.++..+...-+    ....-. +       +....
T Consensus        13 ~~f~dviGQe~vv~~L~~~l~~~-rl~ha~Lf~Gp~GvGKTtlAr~lAk~LnC~~~~~~~~~~~~p-C-------g~C~~   83 (618)
T PRK14951         13 RSFSEMVGQEHVVQALTNALTQQ-RLHHAYLFTGTRGVGKTTVSRILAKSLNCQGPDGQGGITATP-C-------GVCQA   83 (618)
T ss_pred             CCHHHhcCcHHHHHHHHHHHHcC-CCCeEEEEECCCCCCHHHHHHHHHHHhcCCCcccccCCCCCC-C-------CccHH
Confidence            44567899999999999988764 23456799999999999999999986642110    000000 0       00011


Q ss_pred             HHHHHHH----HHhhccccccchhhhHHHHHH----HhCCceEEEEEeCCCCH--HHHHHhhcCCCCCCCCcEEEEEeCC
Q 039455           99 QEQLLSE----VLMERNLIIWDVHKGINLIRW----RLCRKRVLVVLDDVDQL--EQLQALAGNHDWFGFGSRIIITTRD  168 (216)
Q Consensus        99 ~~~l~~~----~~~~~~~~~~~~~~~~~~l~~----~l~~~~~llvlDd~~~~--~~~~~l~~~~~~~~~~~~il~tsr~  168 (216)
                      +..+...    +...........+...+.+..    ...++.-++|||+++.+  +.++.++..+..-...+.+|++|.+
T Consensus        84 C~~i~~g~h~D~~eldaas~~~Vd~iReli~~~~~~p~~g~~KV~IIDEvh~Ls~~a~NaLLKtLEEPP~~~~fIL~Ttd  163 (618)
T PRK14951         84 CRDIDSGRFVDYTELDAASNRGVDEVQQLLEQAVYKPVQGRFKVFMIDEVHMLTNTAFNAMLKTLEEPPEYLKFVLATTD  163 (618)
T ss_pred             HHHHHcCCCCceeecCcccccCHHHHHHHHHHHHhCcccCCceEEEEEChhhCCHHHHHHHHHhcccCCCCeEEEEEECC
Confidence            1111000    000000000011111111111    11234569999999865  4566677666543455666666654


Q ss_pred             c-hhhhc-cCCcceEEecCCChHHHHHHHhhhhcCCC--CCchhHhhhc
Q 039455          169 E-HVLKG-HGVTNIYKVRGLDYVEALQLFHLKVSKGK--QPTDDRVELS  213 (216)
Q Consensus       169 ~-~~~~~-~~~~~~~~l~~l~~~~~~~ll~~~~~~~~--~~~~~~~~l~  213 (216)
                      . .+... ......+++++++.++..+.+.+.+...+  .+++.+..|+
T Consensus       164 ~~kil~TIlSRc~~~~f~~Ls~eei~~~L~~i~~~egi~ie~~AL~~La  212 (618)
T PRK14951        164 PQKVPVTVLSRCLQFNLRPMAPETVLEHLTQVLAAENVPAEPQALRLLA  212 (618)
T ss_pred             chhhhHHHHHhceeeecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHH
Confidence            3 22212 22348899999999999999987664444  2333444443

>PRK08691 DNA polymerase III subunits gamma and tau; Validated

Probab=99.13  E-value=1.2e-09  Score=94.14  Aligned_cols=182  Identities=16%  Similarity=0.136  Sum_probs=100.1

Q ss_pred             CCcccccccchhHHHHHHHHHhcCCCCeeEEEEEecCCCcHHHHHHHHHHHhcCCCCceEeeccccccccccCchHHHHH
Q 039455           22 PSAVDGLVGIASRMEKMNGYLEAGLDDVRFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLANVREVSVTRGLVPLQEQ  101 (216)
Q Consensus        22 ~~~~~~~vgR~~~~~~l~~~l~~~~~~~~~i~I~G~~GiGKTtL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  101 (216)
                      |..-.+++|.+..++.|..++..+ .-...++++|++|+||||+|+.++..+..... ..+..| ..       ...+..
T Consensus        12 P~tFddIIGQe~vv~~L~~ai~~~-rl~Ha~Lf~GP~GvGKTTlAriLAk~LnC~~~-~~~~pC-g~-------C~sCr~   81 (709)
T PRK08691         12 PKTFADLVGQEHVVKALQNALDEG-RLHHAYLLTGTRGVGKTTIARILAKSLNCENA-QHGEPC-GV-------CQSCTQ   81 (709)
T ss_pred             CCCHHHHcCcHHHHHHHHHHHHcC-CCCeEEEEECCCCCcHHHHHHHHHHHhcccCC-CCCCCC-cc-------cHHHHH
Confidence            345567999999999999998854 23467899999999999999999986542211 001000 00       000000


Q ss_pred             HHHH----HHhhccccccchhhhHHHHHH----HhCCceEEEEEeCCCCHH--HHHHhhcCCCCCCCCcEEEEEeCCch-
Q 039455          102 LLSE----VLMERNLIIWDVHKGINLIRW----RLCRKRVLVVLDDVDQLE--QLQALAGNHDWFGFGSRIIITTRDEH-  170 (216)
Q Consensus       102 l~~~----~~~~~~~~~~~~~~~~~~l~~----~l~~~~~llvlDd~~~~~--~~~~l~~~~~~~~~~~~il~tsr~~~-  170 (216)
                      +...    +...........+.....+..    ...++.-++|||+++.+.  .+..++..+..-...+.+|++|.+.. 
T Consensus        82 i~~g~~~DvlEidaAs~~gVd~IRelle~a~~~P~~gk~KVIIIDEad~Ls~~A~NALLKtLEEPp~~v~fILaTtd~~k  161 (709)
T PRK08691         82 IDAGRYVDLLEIDAASNTGIDNIREVLENAQYAPTAGKYKVYIIDEVHMLSKSAFNAMLKTLEEPPEHVKFILATTDPHK  161 (709)
T ss_pred             HhccCccceEEEeccccCCHHHHHHHHHHHHhhhhhCCcEEEEEECccccCHHHHHHHHHHHHhCCCCcEEEEEeCCccc
Confidence            0000    000000000011111111111    122456799999998663  34555554443335566777776542 


Q ss_pred             hhhc-cCCcceEEecCCChHHHHHHHhhhhcCCC--CCchhHhhhc
Q 039455          171 VLKG-HGVTNIYKVRGLDYVEALQLFHLKVSKGK--QPTDDRVELS  213 (216)
Q Consensus       171 ~~~~-~~~~~~~~l~~l~~~~~~~ll~~~~~~~~--~~~~~~~~l~  213 (216)
                      +... ......+++++++.++..+.+.+.+-..+  ..++.+..|+
T Consensus       162 L~~TIrSRC~~f~f~~Ls~eeI~~~L~~Il~kEgi~id~eAL~~Ia  207 (709)
T PRK08691        162 VPVTVLSRCLQFVLRNMTAQQVADHLAHVLDSEKIAYEPPALQLLG  207 (709)
T ss_pred             cchHHHHHHhhhhcCCCCHHHHHHHHHHHHHHcCCCcCHHHHHHHH
Confidence            2211 12236688999999999999987765444  3334455554

>PRK14957 DNA polymerase III subunits gamma and tau; Provisional

Probab=99.13  E-value=3e-09  Score=90.44  Aligned_cols=169  Identities=14%  Similarity=0.130  Sum_probs=92.6

Q ss_pred             CcccccccchhHHHHHHHHHhcCCCCeeEEEEEecCCCcHHHHHHHHHHHhcCCCC--ceEeecc--cccccc--ccCch
Q 039455           23 SAVDGLVGIASRMEKMNGYLEAGLDDVRFIGICGMGGIGKTTLAKVLYNTLKDQFE--ASSFLAN--VREVSV--TRGLV   96 (216)
Q Consensus        23 ~~~~~~vgR~~~~~~l~~~l~~~~~~~~~i~I~G~~GiGKTtL~~~~~~~~~~~~~--~~~~~~~--~~~~~~--~~~~~   96 (216)
                      ..-.+++|.+..++.|...+..+ .-...+.++||.|+||||+|+.++..+.....  ...+..|  +.....  ..++.
T Consensus        13 ~~f~diiGq~~~v~~L~~~i~~~-rl~ha~Lf~Gp~GvGKTTlAr~lAk~L~c~~~~~~~pCg~C~sC~~i~~~~~~dli   91 (546)
T PRK14957         13 QSFAEVAGQQHALNSLVHALETQ-KVHHAYLFTGTRGVGKTTLGRLLAKCLNCKTGVTAEPCNKCENCVAINNNSFIDLI   91 (546)
T ss_pred             CcHHHhcCcHHHHHHHHHHHHcC-CCCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCcccHHHHHHhcCCCCceE
Confidence            34567899999999999988753 22356889999999999999999986542110  0000000  000000  00000


Q ss_pred             HHHHHHHHHHHhhccccccchhhhHHHHH-HHhCCceEEEEEeCCCCH--HHHHHhhcCCCCCCCCcEEEEEeCCc-hhh
Q 039455           97 PLQEQLLSEVLMERNLIIWDVHKGINLIR-WRLCRKRVLVVLDDVDQL--EQLQALAGNHDWFGFGSRIIITTRDE-HVL  172 (216)
Q Consensus        97 ~~~~~l~~~~~~~~~~~~~~~~~~~~~l~-~~l~~~~~llvlDd~~~~--~~~~~l~~~~~~~~~~~~il~tsr~~-~~~  172 (216)
                      .+  .      ........+.......+. ....+++-++||||++..  +....++..+..-...+.+|++|.+. .+.
T Consensus        92 ei--d------aas~~gvd~ir~ii~~~~~~p~~g~~kViIIDEa~~ls~~a~naLLK~LEepp~~v~fIL~Ttd~~kil  163 (546)
T PRK14957         92 EI--D------AASRTGVEETKEILDNIQYMPSQGRYKVYLIDEVHMLSKQSFNALLKTLEEPPEYVKFILATTDYHKIP  163 (546)
T ss_pred             Ee--e------cccccCHHHHHHHHHHHHhhhhcCCcEEEEEechhhccHHHHHHHHHHHhcCCCCceEEEEECChhhhh
Confidence            00  0      000000001111111111 112356679999999855  44555665554333456566555543 233


Q ss_pred             hcc-CCcceEEecCCChHHHHHHHhhhhc
Q 039455          173 KGH-GVTNIYKVRGLDYVEALQLFHLKVS  200 (216)
Q Consensus       173 ~~~-~~~~~~~l~~l~~~~~~~ll~~~~~  200 (216)
                      ..+ .....+++++++.++....+.+.+-
T Consensus       164 ~tI~SRc~~~~f~~Ls~~eI~~~L~~il~  192 (546)
T PRK14957        164 VTILSRCIQLHLKHISQADIKDQLKIILA  192 (546)
T ss_pred             hhHHHheeeEEeCCCCHHHHHHHHHHHHH
Confidence            222 2348899999999999888887543

>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]

Probab=99.13  E-value=5.7e-10  Score=86.37  Aligned_cols=173  Identities=18%  Similarity=0.228  Sum_probs=104.3

Q ss_pred             CCcccccccchhHHHHHHHHHhcCCCCeeEEEEEecCCCcHHHHHHHHHHHhcC--CCCceEeeccccccccccCchHHH
Q 039455           22 PSAVDGLVGIASRMEKMNGYLEAGLDDVRFIGICGMGGIGKTTLAKVLYNTLKD--QFEASSFLANVREVSVTRGLVPLQ   99 (216)
Q Consensus        22 ~~~~~~~vgR~~~~~~l~~~l~~~~~~~~~i~I~G~~GiGKTtL~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~   99 (216)
                      |..-++++|.+...+.|...+..  ...+..+++||+|+|||+.+..++.++..  -++..+.-.+.+.   ..+....-
T Consensus        32 Pkt~de~~gQe~vV~~L~~a~~~--~~lp~~LFyGPpGTGKTStalafar~L~~~~~~~~rvl~lnaSd---erGisvvr  106 (346)
T KOG0989|consen   32 PKTFDELAGQEHVVQVLKNALLR--RILPHYLFYGPPGTGKTSTALAFARALNCEQLFPCRVLELNASD---ERGISVVR  106 (346)
T ss_pred             CCcHHhhcchHHHHHHHHHHHhh--cCCceEEeeCCCCCcHhHHHHHHHHHhcCccccccchhhhcccc---cccccchh
Confidence            44567899999999999998775  45689999999999999999999987643  2333332222222   11111000


Q ss_pred             HHHHHHHHhhccccccchhhhHHHHHHHhC--Cce-EEEEEeCCCCH--HHHHHhhcCCCCCCCCcEEEEEeCCch----
Q 039455          100 EQLLSEVLMERNLIIWDVHKGINLIRWRLC--RKR-VLVVLDDVDQL--EQLQALAGNHDWFGFGSRIIITTRDEH----  170 (216)
Q Consensus       100 ~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~--~~~-~llvlDd~~~~--~~~~~l~~~~~~~~~~~~il~tsr~~~----  170 (216)
                      ..+            .++..+.........  ..+ -++|||++++.  +.|..+...+.+.....++++.|...+    
T Consensus       107 ~Ki------------k~fakl~~~~~~~~~~~~~~fKiiIlDEcdsmtsdaq~aLrr~mE~~s~~trFiLIcnylsrii~  174 (346)
T KOG0989|consen  107 EKI------------KNFAKLTVLLKRSDGYPCPPFKIIILDECDSMTSDAQAALRRTMEDFSRTTRFILICNYLSRIIR  174 (346)
T ss_pred             hhh------------cCHHHHhhccccccCCCCCcceEEEEechhhhhHHHHHHHHHHHhccccceEEEEEcCChhhCCh
Confidence            000            001111111100000  122 49999999876  556666655544455666666665432    


Q ss_pred             -hhhccCCcceEEecCCChHHHHHHHhhhhcCCC--CCchhHhhhcc
Q 039455          171 -VLKGHGVTNIYKVRGLDYVEALQLFHLKVSKGK--QPTDDRVELSK  214 (216)
Q Consensus       171 -~~~~~~~~~~~~l~~l~~~~~~~ll~~~~~~~~--~~~~~~~~l~~  214 (216)
                       +.++   -..|.+++|.+++...-|+..+..++  .+++.++.|++
T Consensus       175 pi~SR---C~KfrFk~L~d~~iv~rL~~Ia~~E~v~~d~~al~~I~~  218 (346)
T KOG0989|consen  175 PLVSR---CQKFRFKKLKDEDIVDRLEKIASKEGVDIDDDALKLIAK  218 (346)
T ss_pred             HHHhh---HHHhcCCCcchHHHHHHHHHHHHHhCCCCCHHHHHHHHH
Confidence             2333   36789999999999999988886666  34455555543

>PRK08903 DnaA regulatory inactivator Hda; Validated

Probab=99.12  E-value=5.7e-10  Score=85.47  Aligned_cols=162  Identities=17%  Similarity=0.221  Sum_probs=87.7

Q ss_pred             cCCCCCCcccccc-cchhHH-HHHHHHHhcCCCCeeEEEEEecCCCcHHHHHHHHHHHhcCCCCceEeeccccccccccC
Q 039455           17 LNPTFPSAVDGLV-GIASRM-EKMNGYLEAGLDDVRFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLANVREVSVTRG   94 (216)
Q Consensus        17 ~~~~~~~~~~~~v-gR~~~~-~~l~~~l~~~~~~~~~i~I~G~~GiGKTtL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   94 (216)
                      ++...+..-++|+ |++.+. ..+..+... ......+.|+|++|+|||+|+..+++.....-..+.++.+...      
T Consensus         9 ~~~~~~~~~d~f~~~~~~~~~~~l~~~~~~-~~~~~~~~l~G~~G~GKT~La~ai~~~~~~~~~~~~~i~~~~~------   81 (227)
T PRK08903          9 LGPPPPPTFDNFVAGENAELVARLRELAAG-PVADRFFYLWGEAGSGRSHLLQALVADASYGGRNARYLDAASP------   81 (227)
T ss_pred             CCCCChhhhcccccCCcHHHHHHHHHHHhc-cCCCCeEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEehHHh------
Confidence            3334444455666 554444 345555442 2345789999999999999999999876444334455441110      


Q ss_pred             chHHHHHHHHHHHhhccccccchhhhHHHHHHHhCCceEEEEEeCCCCHH--HHHHhhcCCCCC-CCCc-EEEEEeCCch
Q 039455           95 LVPLQEQLLSEVLMERNLIIWDVHKGINLIRWRLCRKRVLVVLDDVDQLE--QLQALAGNHDWF-GFGS-RIIITTRDEH  170 (216)
Q Consensus        95 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~llvlDd~~~~~--~~~~l~~~~~~~-~~~~-~il~tsr~~~  170 (216)
                          ...+                       .. ..+.-+|+|||++...  ....+...+... ..+. .+++|++...
T Consensus        82 ----~~~~-----------------------~~-~~~~~~liiDdi~~l~~~~~~~L~~~~~~~~~~~~~~vl~~~~~~~  133 (227)
T PRK08903         82 ----LLAF-----------------------DF-DPEAELYAVDDVERLDDAQQIALFNLFNRVRAHGQGALLVAGPAAP  133 (227)
T ss_pred             ----HHHH-----------------------hh-cccCCEEEEeChhhcCchHHHHHHHHHHHHHHcCCcEEEEeCCCCH
Confidence                0000                       00 1123379999997542  112222222111 1233 3666665432


Q ss_pred             h--------hhccCCcceEEecCCChHHHHHHHhhhhcCCC--CCchhHhhhc
Q 039455          171 V--------LKGHGVTNIYKVRGLDYVEALQLFHLKVSKGK--QPTDDRVELS  213 (216)
Q Consensus       171 ~--------~~~~~~~~~~~l~~l~~~~~~~ll~~~~~~~~--~~~~~~~~l~  213 (216)
                      .        .+.+.....++++|+++++..+++.+.....+  .+++.++.|+
T Consensus       134 ~~~~l~~~L~sr~~~~~~i~l~pl~~~~~~~~l~~~~~~~~v~l~~~al~~L~  186 (227)
T PRK08903        134 LALPLREDLRTRLGWGLVYELKPLSDADKIAALKAAAAERGLQLADEVPDYLL  186 (227)
T ss_pred             HhCCCCHHHHHHHhcCeEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHH
Confidence            1        12333357899999999988888876543322  3444444443

>TIGR00362 DnaA chromosomal replication initiator protein DnaA

Probab=99.11  E-value=1.7e-09  Score=89.81  Aligned_cols=167  Identities=14%  Similarity=0.182  Sum_probs=93.1

Q ss_pred             ccccchhHHHH--HHHHHhcCCCCeeEEEEEecCCCcHHHHHHHHHHHhcCCCC--ceEeeccccccccccCchHHHHHH
Q 039455           27 GLVGIASRMEK--MNGYLEAGLDDVRFIGICGMGGIGKTTLAKVLYNTLKDQFE--ASSFLANVREVSVTRGLVPLQEQL  102 (216)
Q Consensus        27 ~~vgR~~~~~~--l~~~l~~~~~~~~~i~I~G~~GiGKTtL~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~l  102 (216)
                      +.+|.+.....  +..+..........+.|+|++|+|||+|++.+++.+.+..+  .+.++. .         ..+...+
T Consensus       112 fi~g~~n~~a~~~~~~~~~~~~~~~n~l~l~G~~G~GKThL~~ai~~~l~~~~~~~~v~yi~-~---------~~~~~~~  181 (405)
T TIGR00362       112 FVVGKSNRLAHAAALAVAENPGKAYNPLFIYGGVGLGKTHLLHAIGNEILENNPNAKVVYVS-S---------EKFTNDF  181 (405)
T ss_pred             cccCCcHHHHHHHHHHHHhCcCccCCeEEEECCCCCcHHHHHHHHHHHHHHhCCCCcEEEEE-H---------HHHHHHH
Confidence            35576665432  33333332233457899999999999999999998765543  344443 1         1122233


Q ss_pred             HHHHHhhccccccchhhhHHHHHHHhCCceEEEEEeCCCCHH---H-HHHhhcCCCCC-CCCcEEEEEeCCc-h------
Q 039455          103 LSEVLMERNLIIWDVHKGINLIRWRLCRKRVLVVLDDVDQLE---Q-LQALAGNHDWF-GFGSRIIITTRDE-H------  170 (216)
Q Consensus       103 ~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~llvlDd~~~~~---~-~~~l~~~~~~~-~~~~~il~tsr~~-~------  170 (216)
                      ...+...      .    ...+...+.+ .-+|+|||++...   . ...+...+... ..+..+|+|+... .      
T Consensus       182 ~~~~~~~------~----~~~~~~~~~~-~dlLiiDDi~~l~~~~~~~~~l~~~~n~~~~~~~~iiits~~~p~~l~~l~  250 (405)
T TIGR00362       182 VNALRNN------K----MEEFKEKYRS-VDLLLIDDIQFLAGKERTQEEFFHTFNALHENGKQIVLTSDRPPKELPGLE  250 (405)
T ss_pred             HHHHHcC------C----HHHHHHHHHh-CCEEEEehhhhhcCCHHHHHHHHHHHHHHHHCCCCEEEecCCCHHHHhhhh
Confidence            3332211      1    1122222222 3489999997431   1 11222222111 2355677777642 2      


Q ss_pred             --hhhccCCcceEEecCCChHHHHHHHhhhhcCCC--CCchhHhhhcc
Q 039455          171 --VLKGHGVTNIYKVRGLDYVEALQLFHLKVSKGK--QPTDDRVELSK  214 (216)
Q Consensus       171 --~~~~~~~~~~~~l~~l~~~~~~~ll~~~~~~~~--~~~~~~~~l~~  214 (216)
                        +.+++.....+++++.+.++..+++++.+...+  .+++.++.|++
T Consensus       251 ~~l~SRl~~g~~v~i~~pd~~~r~~il~~~~~~~~~~l~~e~l~~ia~  298 (405)
T TIGR00362       251 ERLRSRFEWGLVVDIEPPDLETRLAILQKKAEEEGLELPDEVLEFIAK  298 (405)
T ss_pred             hhhhhhccCCeEEEeCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Confidence              233333456899999999999999998875443  45556666654

DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).

>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]

Probab=99.11  E-value=4.3e-09  Score=91.33  Aligned_cols=167  Identities=19%  Similarity=0.186  Sum_probs=110.8

Q ss_pred             CCCcccccccchhHHHHHHHHHhcCCCCeeEEEEEecCCCcHHHHHHHHHHHhcCCCCceEeeccccccccccCchHHHH
Q 039455           21 FPSAVDGLVGIASRMEKMNGYLEAGLDDVRFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLANVREVSVTRGLVPLQE  100 (216)
Q Consensus        21 ~~~~~~~~vgR~~~~~~l~~~l~~~~~~~~~i~I~G~~GiGKTtL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  100 (216)
                      +|..+.+++-|..-++.|.+.     ..++.+.|+.|+|.|||||+-.++. ....-..+.|++.-.+   ..+...+..
T Consensus        14 ~P~~~~~~v~R~rL~~~L~~~-----~~~RL~li~APAGfGKttl~aq~~~-~~~~~~~v~Wlslde~---dndp~rF~~   84 (894)
T COG2909          14 RPVRPDNYVVRPRLLDRLRRA-----NDYRLILISAPAGFGKTTLLAQWRE-LAADGAAVAWLSLDES---DNDPARFLS   84 (894)
T ss_pred             CCCCcccccccHHHHHHHhcC-----CCceEEEEeCCCCCcHHHHHHHHHH-hcCcccceeEeecCCc---cCCHHHHHH
Confidence            455577888888777666653     4579999999999999999999998 3444578999985443   455667777


Q ss_pred             HHHHHHHhhccccccc------------hhhhHHHHHHHhC--CceEEEEEeCCCCH------HHHHHhhcCCCCCCCCc
Q 039455          101 QLLSEVLMERNLIIWD------------VHKGINLIRWRLC--RKRVLVVLDDVDQL------EQLQALAGNHDWFGFGS  160 (216)
Q Consensus       101 ~l~~~~~~~~~~~~~~------------~~~~~~~l~~~l~--~~~~llvlDd~~~~------~~~~~l~~~~~~~~~~~  160 (216)
                      .++..+....+....+            .......+..-+.  .+++++||||....      ..+..++...+   .+.
T Consensus        85 yLi~al~~~~p~~~~~a~~l~q~~~~~~l~~l~~~L~~Ela~~~~pl~LVlDDyHli~~~~l~~~l~fLl~~~P---~~l  161 (894)
T COG2909          85 YLIAALQQATPTLGDEAQTLLQKHQYVSLESLLSSLLNELASYEGPLYLVLDDYHLISDPALHEALRFLLKHAP---ENL  161 (894)
T ss_pred             HHHHHHHHhCccccHHHHHHHHhcccccHHHHHHHHHHHHHhhcCceEEEeccccccCcccHHHHHHHHHHhCC---CCe
Confidence            7777766443322222            2223333343333  36899999999643      44666666553   678


Q ss_pred             EEEEEeCCchhhhcc---CCcceEEec----CCChHHHHHHHhhhh
Q 039455          161 RIIITTRDEHVLKGH---GVTNIYKVR----GLDYVEALQLFHLKV  199 (216)
Q Consensus       161 ~il~tsr~~~~~~~~---~~~~~~~l~----~l~~~~~~~ll~~~~  199 (216)
                      ..++|||...-...-   -.+..+++.    .|+.+|+.++|....
T Consensus       162 ~lvv~SR~rP~l~la~lRlr~~llEi~~~~Lrf~~eE~~~fl~~~~  207 (894)
T COG2909         162 TLVVTSRSRPQLGLARLRLRDELLEIGSEELRFDTEEAAAFLNDRG  207 (894)
T ss_pred             EEEEEeccCCCCcccceeehhhHHhcChHhhcCChHHHHHHHHHcC
Confidence            899999986432221   122333333    488999999998765

>TIGR02881 spore_V_K stage V sporulation protein K

Probab=99.11  E-value=1.5e-09  Score=84.87  Aligned_cols=164  Identities=15%  Similarity=0.181  Sum_probs=87.9

Q ss_pred             cccccchhHHHHHHHHHh----------c---CCCCeeEEEEEecCCCcHHHHHHHHHHHhcCCC--CceEeeccccccc
Q 039455           26 DGLVGIASRMEKMNGYLE----------A---GLDDVRFIGICGMGGIGKTTLAKVLYNTLKDQF--EASSFLANVREVS   90 (216)
Q Consensus        26 ~~~vgR~~~~~~l~~~l~----------~---~~~~~~~i~I~G~~GiGKTtL~~~~~~~~~~~~--~~~~~~~~~~~~~   90 (216)
                      ..++|.++..+++..+..          .   ..+....++++||+|+||||+|+.++..+....  +...++. +..  
T Consensus         6 ~~~~Gl~~vk~~i~~~~~~~~~~~~~~~~g~~~~~~~~~vll~GppGtGKTtlA~~ia~~l~~~~~~~~~~~v~-~~~--   82 (261)
T TIGR02881         6 SRMVGLDEVKALIKEIYAWIQINEKRKEEGLKTSKQVLHMIFKGNPGTGKTTVARILGKLFKEMNVLSKGHLIE-VER--   82 (261)
T ss_pred             HHhcChHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCcceEEEEcCCCCCHHHHHHHHHHHHHhcCcccCCceEE-ecH--
Confidence            347888888777754321          1   123456899999999999999999998653211  1111111 000  


Q ss_pred             cccCchHHHHHHHHHHHhhccccccchhhhHHHHHHHhCCceEEEEEeCCCCH----------HHHHHhhcCCCCCCCCc
Q 039455           91 VTRGLVPLQEQLLSEVLMERNLIIWDVHKGINLIRWRLCRKRVLVVLDDVDQL----------EQLQALAGNHDWFGFGS  160 (216)
Q Consensus        91 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~llvlDd~~~~----------~~~~~l~~~~~~~~~~~  160 (216)
                               ..+.....+.      ........+...   ...+|+|||++.+          +.+..++..+.......
T Consensus        83 ---------~~l~~~~~g~------~~~~~~~~~~~a---~~~VL~IDE~~~L~~~~~~~~~~~~i~~Ll~~~e~~~~~~  144 (261)
T TIGR02881        83 ---------ADLVGEYIGH------TAQKTREVIKKA---LGGVLFIDEAYSLARGGEKDFGKEAIDTLVKGMEDNRNEF  144 (261)
T ss_pred             ---------HHhhhhhccc------hHHHHHHHHHhc---cCCEEEEechhhhccCCccchHHHHHHHHHHHHhccCCCE
Confidence                     0111111000      011112222221   1348999999753          23444554443223334


Q ss_pred             EEEEEeCCchh----------hhccCCcceEEecCCChHHHHHHHhhhhcCCC--CCchhHhhh
Q 039455          161 RIIITTRDEHV----------LKGHGVTNIYKVRGLDYVEALQLFHLKVSKGK--QPTDDRVEL  212 (216)
Q Consensus       161 ~il~tsr~~~~----------~~~~~~~~~~~l~~l~~~~~~~ll~~~~~~~~--~~~~~~~~l  212 (216)
                      .+++++...+.          .+.  ....+.+++++.++..+++++.+...+  .+++.+..|
T Consensus       145 ~vila~~~~~~~~~~~~~p~L~sR--f~~~i~f~~~~~~el~~Il~~~~~~~~~~l~~~a~~~l  206 (261)
T TIGR02881       145 VLILAGYSDEMDYFLSLNPGLRSR--FPISIDFPDYTVEELMEIAERMVKEREYKLTEEAKWKL  206 (261)
T ss_pred             EEEecCCcchhHHHHhcChHHHhc--cceEEEECCCCHHHHHHHHHHHHHHcCCccCHHHHHHH
Confidence            45555543221          122  246799999999999999998774433  333444443

Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.

>PRK07994 DNA polymerase III subunits gamma and tau; Validated

Probab=99.11  E-value=2.8e-09  Score=92.01  Aligned_cols=168  Identities=15%  Similarity=0.134  Sum_probs=94.9

Q ss_pred             CCcccccccchhHHHHHHHHHhcCCCCeeEEEEEecCCCcHHHHHHHHHHHhcCCCCceEeeccccccccccCchHHHHH
Q 039455           22 PSAVDGLVGIASRMEKMNGYLEAGLDDVRFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLANVREVSVTRGLVPLQEQ  101 (216)
Q Consensus        22 ~~~~~~~vgR~~~~~~l~~~l~~~~~~~~~i~I~G~~GiGKTtL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  101 (216)
                      |..-.+++|.+..++.|...+..+ .-...+.++|+.|+||||+|+.++..+...... .... ++       ....+..
T Consensus        12 P~~f~divGQe~vv~~L~~~l~~~-rl~hAyLf~Gp~GvGKTTlAr~lAk~L~c~~~~-~~~p-Cg-------~C~~C~~   81 (647)
T PRK07994         12 PQTFAEVVGQEHVLTALANALDLG-RLHHAYLFSGTRGVGKTTIARLLAKGLNCETGI-TATP-CG-------ECDNCRE   81 (647)
T ss_pred             CCCHHHhcCcHHHHHHHHHHHHcC-CCCeEEEEECCCCCCHHHHHHHHHHhhhhccCC-CCCC-CC-------CCHHHHH
Confidence            345667999999999999988754 233557899999999999999999865432100 0000 00       0011111


Q ss_pred             HHHH----HHhhccccccchhhhH---HHHH-HHhCCceEEEEEeCCCCH--HHHHHhhcCCCCCCCCcEEEEEeCCch-
Q 039455          102 LLSE----VLMERNLIIWDVHKGI---NLIR-WRLCRKRVLVVLDDVDQL--EQLQALAGNHDWFGFGSRIIITTRDEH-  170 (216)
Q Consensus       102 l~~~----~~~~~~~~~~~~~~~~---~~l~-~~l~~~~~llvlDd~~~~--~~~~~l~~~~~~~~~~~~il~tsr~~~-  170 (216)
                      +...    +...........+...   ..+. ....++.-++|||+++.+  ...+.++..+..-...+.+|++|.+.. 
T Consensus        82 i~~g~~~D~ieidaas~~~VddiR~li~~~~~~p~~g~~KV~IIDEah~Ls~~a~NALLKtLEEPp~~v~FIL~Tt~~~k  161 (647)
T PRK07994         82 IEQGRFVDLIEIDAASRTKVEDTRELLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQK  161 (647)
T ss_pred             HHcCCCCCceeecccccCCHHHHHHHHHHHHhhhhcCCCEEEEEechHhCCHHHHHHHHHHHHcCCCCeEEEEecCCccc
Confidence            1100    0000000000111111   1111 112356679999999855  456666655543334566666665543 


Q ss_pred             hhhcc-CCcceEEecCCChHHHHHHHhhhh
Q 039455          171 VLKGH-GVTNIYKVRGLDYVEALQLFHLKV  199 (216)
Q Consensus       171 ~~~~~-~~~~~~~l~~l~~~~~~~ll~~~~  199 (216)
                      +...+ .....+.+++++.++..+++...+
T Consensus       162 Ll~TI~SRC~~~~f~~Ls~~ei~~~L~~il  191 (647)
T PRK07994        162 LPVTILSRCLQFHLKALDVEQIRQQLEHIL  191 (647)
T ss_pred             cchHHHhhheEeeCCCCCHHHHHHHHHHHH
Confidence            33222 224889999999999999998765

>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA

Probab=99.10  E-value=1.5e-09  Score=96.16  Aligned_cols=154  Identities=16%  Similarity=0.151  Sum_probs=89.9

Q ss_pred             cccccccchhHHHHHHHHHhcCCCCeeEEEEEecCCCcHHHHHHHHHHHhcCC-C-----CceEeeccccccccccCchH
Q 039455           24 AVDGLVGIASRMEKMNGYLEAGLDDVRFIGICGMGGIGKTTLAKVLYNTLKDQ-F-----EASSFLANVREVSVTRGLVP   97 (216)
Q Consensus        24 ~~~~~vgR~~~~~~l~~~l~~~~~~~~~i~I~G~~GiGKTtL~~~~~~~~~~~-~-----~~~~~~~~~~~~~~~~~~~~   97 (216)
                      ..++++||++++..+...|...  ....++++|++|+|||++++.+++++... .     ...+|..+..          
T Consensus       180 ~l~~~igr~~ei~~~~~~L~~~--~~~n~lL~G~pG~GKT~l~~~la~~~~~~~~p~~l~~~~~~~~~~~----------  247 (731)
T TIGR02639       180 KIDPLIGREDELERTIQVLCRR--KKNNPLLVGEPGVGKTAIAEGLALRIAEGKVPENLKNAKIYSLDMG----------  247 (731)
T ss_pred             CCCcccCcHHHHHHHHHHHhcC--CCCceEEECCCCCCHHHHHHHHHHHHHhCCCchhhcCCeEEEecHH----------
Confidence            3457999999999999888754  23567899999999999999999987432 1     1222221111          


Q ss_pred             HHHHHHHHHHhhccccccchhhhHHHHHHHh-CCceEEEEEeCCCCH----------HHHHH-hhcCCCCCCCCcEEEEE
Q 039455           98 LQEQLLSEVLMERNLIIWDVHKGINLIRWRL-CRKRVLVVLDDVDQL----------EQLQA-LAGNHDWFGFGSRIIIT  165 (216)
Q Consensus        98 ~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l-~~~~~llvlDd~~~~----------~~~~~-l~~~~~~~~~~~~il~t  165 (216)
                         .+...    .. ...+++.....+.+.+ ..++.+|+||+++..          .+..+ +.+.+.  .....+|-+
T Consensus       248 ---~l~a~----~~-~~g~~e~~l~~i~~~~~~~~~~ILfiDEih~l~~~g~~~~~~~~~~~~L~~~l~--~g~i~~Iga  317 (731)
T TIGR02639       248 ---SLLAG----TK-YRGDFEERLKAVVSEIEKEPNAILFIDEIHTIVGAGATSGGSMDASNLLKPALS--SGKLRCIGS  317 (731)
T ss_pred             ---HHhhh----cc-ccchHHHHHHHHHHHHhccCCeEEEEecHHHHhccCCCCCccHHHHHHHHHHHh--CCCeEEEEe
Confidence               11100    00 0011222222222222 345789999998633          12223 333332  223455655


Q ss_pred             eCCchhhhc-------cCCcceEEecCCChHHHHHHHhhhh
Q 039455          166 TRDEHVLKG-------HGVTNIYKVRGLDYVEALQLFHLKV  199 (216)
Q Consensus       166 sr~~~~~~~-------~~~~~~~~l~~l~~~~~~~ll~~~~  199 (216)
                      |...++...       ...+..+++++++.++..+++++..
T Consensus       318 Tt~~e~~~~~~~d~al~rRf~~i~v~~p~~~~~~~il~~~~  358 (731)
T TIGR02639       318 TTYEEYKNHFEKDRALSRRFQKIDVGEPSIEETVKILKGLK  358 (731)
T ss_pred             cCHHHHHHHhhhhHHHHHhCceEEeCCCCHHHHHHHHHHHH
Confidence            554332111       1235789999999999999998544

>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]

Probab=99.10  E-value=3.4e-10  Score=86.57  Aligned_cols=59  Identities=19%  Similarity=0.210  Sum_probs=43.7

Q ss_pred             cchhhhHHHHHHHhCCceEEEEEeCC----C--CHHHHHHhhcCCCCCCCCcEEEEEeCCchhhhcc
Q 039455          115 WDVHKGINLIRWRLCRKRVLVVLDDV----D--QLEQLQALAGNHDWFGFGSRIIITTRDEHVLKGH  175 (216)
Q Consensus       115 ~~~~~~~~~l~~~l~~~~~llvlDd~----~--~~~~~~~l~~~~~~~~~~~~il~tsr~~~~~~~~  175 (216)
                      +..+.....++++|.+++-+++||+.    |  +...+-.++..+.  ..|+.||++||+......+
T Consensus       141 SGGQ~QRV~lARAL~~~p~lllLDEP~~gvD~~~~~~i~~lL~~l~--~eg~tIl~vtHDL~~v~~~  205 (254)
T COG1121         141 SGGQKQRVLLARALAQNPDLLLLDEPFTGVDVAGQKEIYDLLKELR--QEGKTVLMVTHDLGLVMAY  205 (254)
T ss_pred             CcHHHHHHHHHHHhccCCCEEEecCCcccCCHHHHHHHHHHHHHHH--HCCCEEEEEeCCcHHhHhh
Confidence            33455566789999999999999966    2  3355666666665  3489999999998766654

>PRK12422 chromosomal replication initiation protein; Provisional

Probab=99.10  E-value=2.9e-09  Score=88.92  Aligned_cols=165  Identities=13%  Similarity=0.084  Sum_probs=94.3

Q ss_pred             ccccchhHHH--HHHHHHhcC----CCCeeEEEEEecCCCcHHHHHHHHHHHhcCCCCceEeeccccccccccCchHHHH
Q 039455           27 GLVGIASRME--KMNGYLEAG----LDDVRFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLANVREVSVTRGLVPLQE  100 (216)
Q Consensus        27 ~~vgR~~~~~--~l~~~l~~~----~~~~~~i~I~G~~GiGKTtL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  100 (216)
                      +.+|......  ...++....    +.....+.|+|++|+|||+|++.+++.+.+....+.++. .         ..+..
T Consensus       113 Fv~g~~N~~a~~~a~~~a~~~~~~~~~~~npl~L~G~~G~GKTHLl~Ai~~~l~~~~~~v~yi~-~---------~~f~~  182 (445)
T PRK12422        113 FLVTPENDLPHRILQEFTKVSEQGKGFPFNPIYLFGPEGSGKTHLMQAAVHALRESGGKILYVR-S---------ELFTE  182 (445)
T ss_pred             eeeCCcHHHHHHHHHHHHhccccccCCCCceEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEee-H---------HHHHH
Confidence            4457766654  344443311    122357899999999999999999998765444455553 1         11222


Q ss_pred             HHHHHHHhhccccccchhhhHHHHHHHhCCceEEEEEeCCCCH-------HHHHHhhcCCCCCCCCcEEEEEeCCc----
Q 039455          101 QLLSEVLMERNLIIWDVHKGINLIRWRLCRKRVLVVLDDVDQL-------EQLQALAGNHDWFGFGSRIIITTRDE----  169 (216)
Q Consensus       101 ~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~llvlDd~~~~-------~~~~~l~~~~~~~~~~~~il~tsr~~----  169 (216)
                      .+...+...          ....+..... +.-+|+|||++..       +.+..++..+.  ..+..+|+||...    
T Consensus       183 ~~~~~l~~~----------~~~~f~~~~~-~~dvLiIDDiq~l~~k~~~qeelf~l~N~l~--~~~k~IIlts~~~p~~l  249 (445)
T PRK12422        183 HLVSAIRSG----------EMQRFRQFYR-NVDALFIEDIEVFSGKGATQEEFFHTFNSLH--TEGKLIVISSTCAPQDL  249 (445)
T ss_pred             HHHHHHhcc----------hHHHHHHHcc-cCCEEEEcchhhhcCChhhHHHHHHHHHHHH--HCCCcEEEecCCCHHHH
Confidence            222222110          1122333332 3448899998644       12222222221  2356788888542    


Q ss_pred             -----hhhhccCCcceEEecCCChHHHHHHHhhhhcCCC--CCchhHhhhcc
Q 039455          170 -----HVLKGHGVTNIYKVRGLDYVEALQLFHLKVSKGK--QPTDDRVELSK  214 (216)
Q Consensus       170 -----~~~~~~~~~~~~~l~~l~~~~~~~ll~~~~~~~~--~~~~~~~~l~~  214 (216)
                           .+.+++.....+++.+++.++..+++++.+-..+  .+++.+..|+.
T Consensus       250 ~~l~~rL~SR~~~Gl~~~l~~pd~e~r~~iL~~k~~~~~~~l~~evl~~la~  301 (445)
T PRK12422        250 KAMEERLISRFEWGIAIPLHPLTKEGLRSFLERKAEALSIRIEETALDFLIE  301 (445)
T ss_pred             hhhHHHHHhhhcCCeEEecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Confidence                 2234444567899999999999999998774443  34455554544

>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair

Probab=99.09  E-value=3.7e-09  Score=79.24  Aligned_cols=162  Identities=17%  Similarity=0.229  Sum_probs=83.3

Q ss_pred             CCcccccccchhHHHHHHHHHhc---CCCCeeEEEEEecCCCcHHHHHHHHHHHhcCCCCceEeeccccccccccCchHH
Q 039455           22 PSAVDGLVGIASRMEKMNGYLEA---GLDDVRFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLANVREVSVTRGLVPL   98 (216)
Q Consensus        22 ~~~~~~~vgR~~~~~~l~~~l~~---~~~~~~~i~I~G~~GiGKTtL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   98 (216)
                      |..-++|+|.++.+..+.-++..   .+.....+.++||+|+||||||..+++.....|.   +.+. ...   ....++
T Consensus        20 P~~L~efiGQ~~l~~~l~i~i~aa~~r~~~l~h~lf~GPPG~GKTTLA~IIA~e~~~~~~---~~sg-~~i---~k~~dl   92 (233)
T PF05496_consen   20 PKSLDEFIGQEHLKGNLKILIRAAKKRGEALDHMLFYGPPGLGKTTLARIIANELGVNFK---ITSG-PAI---EKAGDL   92 (233)
T ss_dssp             -SSCCCS-S-HHHHHHHHHHHHHHHCTTS---EEEEESSTTSSHHHHHHHHHHHCT--EE---EEEC-CC-----SCHHH
T ss_pred             CCCHHHccCcHHHHhhhHHHHHHHHhcCCCcceEEEECCCccchhHHHHHHHhccCCCeE---eccc-hhh---hhHHHH
Confidence            44577899999999998776652   2345678999999999999999999998765442   2210 000   001111


Q ss_pred             HHHHHHHHHhhccccccchhhhHHHHHHHhCCceEEEEEeCCCCHHH--HHHhhcCCCC------CC------------C
Q 039455           99 QEQLLSEVLMERNLIIWDVHKGINLIRWRLCRKRVLVVLDDVDQLEQ--LQALAGNHDW------FG------------F  158 (216)
Q Consensus        99 ~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~llvlDd~~~~~~--~~~l~~~~~~------~~------------~  158 (216)
                       ..++                     . .+ ++.-+|++|+++....  -+.+++.+.+      .+            +
T Consensus        93 -~~il---------------------~-~l-~~~~ILFIDEIHRlnk~~qe~LlpamEd~~idiiiG~g~~ar~~~~~l~  148 (233)
T PF05496_consen   93 -AAIL---------------------T-NL-KEGDILFIDEIHRLNKAQQEILLPAMEDGKIDIIIGKGPNARSIRINLP  148 (233)
T ss_dssp             -HHHH---------------------H-T---TT-EEEECTCCC--HHHHHHHHHHHHCSEEEEEBSSSSS-BEEEEE--
T ss_pred             -HHHH---------------------H-hc-CCCcEEEEechhhccHHHHHHHHHHhccCeEEEEeccccccceeeccCC
Confidence             1111                     1 11 2344889999976521  1112221110      01            1


Q ss_pred             CcEE-EEEeCCchhhhccC--CcceEEecCCChHHHHHHHhhhhcCCC--CCchhHhhhcc
Q 039455          159 GSRI-IITTRDEHVLKGHG--VTNIYKVRGLDYVEALQLFHLKVSKGK--QPTDDRVELSK  214 (216)
Q Consensus       159 ~~~i-l~tsr~~~~~~~~~--~~~~~~l~~l~~~~~~~ll~~~~~~~~--~~~~~~~~l~~  214 (216)
                      ..++ =.|||...+..-+.  ..-..+++..+.+|..+++.+.+...+  ..++...+|++
T Consensus       149 ~FTligATTr~g~ls~pLrdRFgi~~~l~~Y~~~el~~Iv~r~a~~l~i~i~~~~~~~Ia~  209 (233)
T PF05496_consen  149 PFTLIGATTRAGLLSSPLRDRFGIVLRLEFYSEEELAKIVKRSARILNIEIDEDAAEEIAR  209 (233)
T ss_dssp             --EEEEEESSGCCTSHCCCTTSSEEEE----THHHHHHHHHHCCHCTT-EE-HHHHHHHHH
T ss_pred             CceEeeeeccccccchhHHhhcceecchhcCCHHHHHHHHHHHHHHhCCCcCHHHHHHHHH
Confidence            1233 35677654443332  234468999999999999998775544  44556666654

Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.

>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau

Probab=99.09  E-value=5.5e-09  Score=85.27  Aligned_cols=182  Identities=13%  Similarity=0.172  Sum_probs=97.8

Q ss_pred             CCcccccccchhHHHHHHHHHhcCCCCeeEEEEEecCCCcHHHHHHHHHHHhcCCC-----CceEeeccccccc-cccCc
Q 039455           22 PSAVDGLVGIASRMEKMNGYLEAGLDDVRFIGICGMGGIGKTTLAKVLYNTLKDQF-----EASSFLANVREVS-VTRGL   95 (216)
Q Consensus        22 ~~~~~~~vgR~~~~~~l~~~l~~~~~~~~~i~I~G~~GiGKTtL~~~~~~~~~~~~-----~~~~~~~~~~~~~-~~~~~   95 (216)
                      |...+.++|.+..++.|.+++..+ .-...+.++||+|+|||++++.++..+...-     ++..+.++..-.. ...++
T Consensus        10 p~~~~~iig~~~~~~~l~~~~~~~-~~~~~~Ll~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~~c~~c~~~~~~~~~~~   88 (355)
T TIGR02397        10 PQTFEDVIGQEHIVQTLKNAIKNG-RIAHAYLFSGPRGTGKTSIARIFAKALNCQNGPDGEPCNECESCKEINSGSSLDV   88 (355)
T ss_pred             CCcHhhccCcHHHHHHHHHHHHcC-CCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHHHHHhcCCCCCE
Confidence            445667899999999999988754 2346789999999999999999998764221     1110000000000 00000


Q ss_pred             hHHHHHHHHHHHhhccccccchhhhHHHHHH-HhCCceEEEEEeCCCCH--HHHHHhhcCCCCCCCCcEEEEEeCCch-h
Q 039455           96 VPLQEQLLSEVLMERNLIIWDVHKGINLIRW-RLCRKRVLVVLDDVDQL--EQLQALAGNHDWFGFGSRIIITTRDEH-V  171 (216)
Q Consensus        96 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~-~l~~~~~llvlDd~~~~--~~~~~l~~~~~~~~~~~~il~tsr~~~-~  171 (216)
                      ..+        .........+.......+.. .+.+++-++|+|+++..  .....++..+......+.+|++|.+.. +
T Consensus        89 ~~~--------~~~~~~~~~~~~~l~~~~~~~p~~~~~~vviidea~~l~~~~~~~Ll~~le~~~~~~~lIl~~~~~~~l  160 (355)
T TIGR02397        89 IEI--------DAASNNGVDDIREILDNVKYAPSSGKYKVYIIDEVHMLSKSAFNALLKTLEEPPEHVVFILATTEPHKI  160 (355)
T ss_pred             EEe--------eccccCCHHHHHHHHHHHhcCcccCCceEEEEeChhhcCHHHHHHHHHHHhCCccceeEEEEeCCHHHH
Confidence            000        00000000000111111110 12234568999999765  445556555543334566667776554 2


Q ss_pred             hhcc-CCcceEEecCCChHHHHHHHhhhhcCCC--CCchhHhhh
Q 039455          172 LKGH-GVTNIYKVRGLDYVEALQLFHLKVSKGK--QPTDDRVEL  212 (216)
Q Consensus       172 ~~~~-~~~~~~~l~~l~~~~~~~ll~~~~~~~~--~~~~~~~~l  212 (216)
                      ...+ .....+++++++.++..+++...+-..+  .+++.++.|
T Consensus       161 ~~~l~sr~~~~~~~~~~~~~l~~~l~~~~~~~g~~i~~~a~~~l  204 (355)
T TIGR02397       161 PATILSRCQRFDFKRIPLEDIVERLKKILDKEGIKIEDEALELI  204 (355)
T ss_pred             HHHHHhheeEEEcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHH
Confidence            2222 2346889999999999999987653333  333444443

This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.

>PRK14964 DNA polymerase III subunits gamma and tau; Provisional

Probab=99.09  E-value=4e-09  Score=88.49  Aligned_cols=168  Identities=14%  Similarity=0.141  Sum_probs=100.2

Q ss_pred             CCcccccccchhHHHHHHHHHhcCCCCeeEEEEEecCCCcHHHHHHHHHHHhcCCC---------------------Cce
Q 039455           22 PSAVDGLVGIASRMEKMNGYLEAGLDDVRFIGICGMGGIGKTTLAKVLYNTLKDQF---------------------EAS   80 (216)
Q Consensus        22 ~~~~~~~vgR~~~~~~l~~~l~~~~~~~~~i~I~G~~GiGKTtL~~~~~~~~~~~~---------------------~~~   80 (216)
                      |..-.+++|.+...+.|...+..+ .-...+.++||+|+||||+|+.++..+....                     +.+
T Consensus         9 P~~f~dliGQe~vv~~L~~a~~~~-ri~ha~Lf~Gp~G~GKTT~ArilAk~LnC~~~~~~~pCg~C~~C~~i~~~~~~Dv   87 (491)
T PRK14964          9 PSSFKDLVGQDVLVRILRNAFTLN-KIPQSILLVGASGVGKTTCARIISLCLNCSNGPTSDPCGTCHNCISIKNSNHPDV   87 (491)
T ss_pred             CCCHHHhcCcHHHHHHHHHHHHcC-CCCceEEEECCCCccHHHHHHHHHHHHcCcCCCCCCCccccHHHHHHhccCCCCE
Confidence            344567999999999998877654 2345899999999999999999998653211                     111


Q ss_pred             EeeccccccccccCchHHHHHHHHHHHhhccccccchhhhHHHHH-HHhCCceEEEEEeCCCCH--HHHHHhhcCCCCCC
Q 039455           81 SFLANVREVSVTRGLVPLQEQLLSEVLMERNLIIWDVHKGINLIR-WRLCRKRVLVVLDDVDQL--EQLQALAGNHDWFG  157 (216)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~-~~l~~~~~llvlDd~~~~--~~~~~l~~~~~~~~  157 (216)
                      ..+...+    ...... ...+.                  +... ..+.++.-++|||+++.+  +.++.++..+..-.
T Consensus        88 ~eidaas----~~~vdd-IR~Ii------------------e~~~~~P~~~~~KVvIIDEah~Ls~~A~NaLLK~LEePp  144 (491)
T PRK14964         88 IEIDAAS----NTSVDD-IKVIL------------------ENSCYLPISSKFKVYIIDEVHMLSNSAFNALLKTLEEPA  144 (491)
T ss_pred             EEEeccc----CCCHHH-HHHHH------------------HHHHhccccCCceEEEEeChHhCCHHHHHHHHHHHhCCC
Confidence            2211000    000000 11111                  1110 012245669999999755  44666665554334


Q ss_pred             CCcEEEEEeCCc-hhhhcc-CCcceEEecCCChHHHHHHHhhhhcCCC--CCchhHhhhc
Q 039455          158 FGSRIIITTRDE-HVLKGH-GVTNIYKVRGLDYVEALQLFHLKVSKGK--QPTDDRVELS  213 (216)
Q Consensus       158 ~~~~il~tsr~~-~~~~~~-~~~~~~~l~~l~~~~~~~ll~~~~~~~~--~~~~~~~~l~  213 (216)
                      +...+|++|.+. .+...+ .....+++++++.++..+.+.+.+...+  .+++.++.|+
T Consensus       145 ~~v~fIlatte~~Kl~~tI~SRc~~~~f~~l~~~el~~~L~~ia~~Egi~i~~eAL~lIa  204 (491)
T PRK14964        145 PHVKFILATTEVKKIPVTIISRCQRFDLQKIPTDKLVEHLVDIAKKENIEHDEESLKLIA  204 (491)
T ss_pred             CCeEEEEEeCChHHHHHHHHHhheeeecccccHHHHHHHHHHHHHHcCCCCCHHHHHHHH
Confidence            556677666543 232222 2347899999999999999988765444  3445555554

>PRK06645 DNA polymerase III subunits gamma and tau; Validated

Probab=99.08  E-value=5.1e-09  Score=88.45  Aligned_cols=184  Identities=15%  Similarity=0.107  Sum_probs=101.7

Q ss_pred             CCcccccccchhHHHHHHHHHhcCCCCeeEEEEEecCCCcHHHHHHHHHHHhcCCCCc---eEeeccccccccccCchHH
Q 039455           22 PSAVDGLVGIASRMEKMNGYLEAGLDDVRFIGICGMGGIGKTTLAKVLYNTLKDQFEA---SSFLANVREVSVTRGLVPL   98 (216)
Q Consensus        22 ~~~~~~~vgR~~~~~~l~~~l~~~~~~~~~i~I~G~~GiGKTtL~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~   98 (216)
                      |..-.+++|.+..++.|...+..+ .-...+.++||+|+||||+|+.++..+....+.   ..+..|        .....
T Consensus        17 P~~f~dliGq~~vv~~L~~ai~~~-ri~~a~Lf~Gp~G~GKTT~ArilAk~Lnc~~~~~~~~~~~~C--------~~C~~   87 (507)
T PRK06645         17 PSNFAELQGQEVLVKVLSYTILND-RLAGGYLLTGIRGVGKTTSARIIAKAVNCSALITENTTIKTC--------EQCTN   87 (507)
T ss_pred             CCCHHHhcCcHHHHHHHHHHHHcC-CCCceEEEECCCCCCHHHHHHHHHHHhcCccccccCcCcCCC--------CCChH
Confidence            445567899999999998877653 234689999999999999999999876432110   000000        00000


Q ss_pred             HHHHHHHH----HhhccccccchhhhHHHHH----HHhCCceEEEEEeCCCCH--HHHHHhhcCCCCCCCCcEEEEEeCC
Q 039455           99 QEQLLSEV----LMERNLIIWDVHKGINLIR----WRLCRKRVLVVLDDVDQL--EQLQALAGNHDWFGFGSRIIITTRD  168 (216)
Q Consensus        99 ~~~l~~~~----~~~~~~~~~~~~~~~~~l~----~~l~~~~~llvlDd~~~~--~~~~~l~~~~~~~~~~~~il~tsr~  168 (216)
                      +..+....    ...........+.....+.    ..+.++..++||||++..  ..+..++..+..-...+.+|++|..
T Consensus        88 C~~i~~~~h~Dv~eidaas~~~vd~Ir~iie~a~~~P~~~~~KVvIIDEa~~Ls~~a~naLLk~LEepp~~~vfI~aTte  167 (507)
T PRK06645         88 CISFNNHNHPDIIEIDAASKTSVDDIRRIIESAEYKPLQGKHKIFIIDEVHMLSKGAFNALLKTLEEPPPHIIFIFATTE  167 (507)
T ss_pred             HHHHhcCCCCcEEEeeccCCCCHHHHHHHHHHHHhccccCCcEEEEEEChhhcCHHHHHHHHHHHhhcCCCEEEEEEeCC
Confidence            01110000    0000000001111111111    112345679999999865  4466666555433445566655543


Q ss_pred             c-hhhhcc-CCcceEEecCCChHHHHHHHhhhhcCCC--CCchhHhhhcc
Q 039455          169 E-HVLKGH-GVTNIYKVRGLDYVEALQLFHLKVSKGK--QPTDDRVELSK  214 (216)
Q Consensus       169 ~-~~~~~~-~~~~~~~l~~l~~~~~~~ll~~~~~~~~--~~~~~~~~l~~  214 (216)
                      . .+...+ .....+++++++.++..+++.+.+...+  ..++.++.|++
T Consensus       168 ~~kI~~tI~SRc~~~ef~~ls~~el~~~L~~i~~~egi~ie~eAL~~Ia~  217 (507)
T PRK06645        168 VQKIPATIISRCQRYDLRRLSFEEIFKLLEYITKQENLKTDIEALRIIAY  217 (507)
T ss_pred             hHHhhHHHHhcceEEEccCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Confidence            3 333222 2336799999999999999998775544  23345555543

>PRK06620 hypothetical protein; Validated

Probab=99.08  E-value=1.4e-09  Score=82.42  Aligned_cols=149  Identities=13%  Similarity=0.034  Sum_probs=86.5

Q ss_pred             CcccccccchhH--HHHHHHHHhcCCCC--eeEEEEEecCCCcHHHHHHHHHHHhcCCCCceEeeccccccccccCchHH
Q 039455           23 SAVDGLVGIASR--MEKMNGYLEAGLDD--VRFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLANVREVSVTRGLVPL   98 (216)
Q Consensus        23 ~~~~~~vgR~~~--~~~l~~~l~~~~~~--~~~i~I~G~~GiGKTtL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   98 (216)
                      +-..+++|....  ...+..+-.....+  ...+.|+||+|+|||+|++.+++...     ..++....      ..   
T Consensus        14 tfd~Fvvg~~N~~a~~~~~~~~~~~~~~~~~~~l~l~Gp~G~GKThLl~a~~~~~~-----~~~~~~~~------~~---   79 (214)
T PRK06620         14 HPDEFIVSSSNDQAYNIIKNWQCGFGVNPYKFTLLIKGPSSSGKTYLTKIWQNLSN-----AYIIKDIF------FN---   79 (214)
T ss_pred             CchhhEecccHHHHHHHHHHHHHccccCCCcceEEEECCCCCCHHHHHHHHHhccC-----CEEcchhh------hc---
Confidence            345667777333  22344444321111  26799999999999999998876542     12221000      00   


Q ss_pred             HHHHHHHHHhhccccccchhhhHHHHHHHhCCceEEEEEeCCCCHHH--HHHhhcCCCCCCCCcEEEEEeCCc-------
Q 039455           99 QEQLLSEVLMERNLIIWDVHKGINLIRWRLCRKRVLVVLDDVDQLEQ--LQALAGNHDWFGFGSRIIITTRDE-------  169 (216)
Q Consensus        99 ~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~llvlDd~~~~~~--~~~l~~~~~~~~~~~~il~tsr~~-------  169 (216)
                       .                     .    .. ...-+|++||++..++  +..+...+.  ..|..+|+|++.+       
T Consensus        80 -~---------------------~----~~-~~~d~lliDdi~~~~~~~lf~l~N~~~--e~g~~ilits~~~p~~l~l~  130 (214)
T PRK06620         80 -E---------------------E----IL-EKYNAFIIEDIENWQEPALLHIFNIIN--EKQKYLLLTSSDKSRNFTLP  130 (214)
T ss_pred             -h---------------------h----HH-hcCCEEEEeccccchHHHHHHHHHHHH--hcCCEEEEEcCCCccccchH
Confidence             0                     0    00 1223789999975532  333333332  3466788888743       


Q ss_pred             hhhhccCCcceEEecCCChHHHHHHHhhhhcCCC--CCchhHhhhcc
Q 039455          170 HVLKGHGVTNIYKVRGLDYVEALQLFHLKVSKGK--QPTDDRVELSK  214 (216)
Q Consensus       170 ~~~~~~~~~~~~~l~~l~~~~~~~ll~~~~~~~~--~~~~~~~~l~~  214 (216)
                      .+.+++....++++++++.++..+++++.+...+  .+++..+.|++
T Consensus       131 ~L~SRl~~gl~~~l~~pd~~~~~~~l~k~~~~~~l~l~~ev~~~L~~  177 (214)
T PRK06620        131 DLSSRIKSVLSILLNSPDDELIKILIFKHFSISSVTISRQIIDFLLV  177 (214)
T ss_pred             HHHHHHhCCceEeeCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Confidence            2344455567999999999999999987764332  45555555543

>PRK14958 DNA polymerase III subunits gamma and tau; Provisional

Probab=99.06  E-value=4.4e-09  Score=89.18  Aligned_cols=172  Identities=15%  Similarity=0.109  Sum_probs=93.8

Q ss_pred             CCcccccccchhHHHHHHHHHhcCCCCeeEEEEEecCCCcHHHHHHHHHHHhcCCCCceEeeccccccccccCchHHHHH
Q 039455           22 PSAVDGLVGIASRMEKMNGYLEAGLDDVRFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLANVREVSVTRGLVPLQEQ  101 (216)
Q Consensus        22 ~~~~~~~vgR~~~~~~l~~~l~~~~~~~~~i~I~G~~GiGKTtL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  101 (216)
                      |..-.+++|.+..++.|..++..+ .-...+.++||+|+||||+|+.++..+....... .-. ++       -...+..
T Consensus        12 P~~f~divGq~~v~~~L~~~~~~~-~l~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~-~~p-Cg-------~C~~C~~   81 (509)
T PRK14958         12 PRCFQEVIGQAPVVRALSNALDQQ-YLHHAYLFTGTRGVGKTTISRILAKCLNCEKGVS-ANP-CN-------DCENCRE   81 (509)
T ss_pred             CCCHHHhcCCHHHHHHHHHHHHhC-CCCeeEEEECCCCCCHHHHHHHHHHHhcCCCCCC-ccc-CC-------CCHHHHH
Confidence            344567999999999999998754 2235689999999999999999998664211000 000 00       0000000


Q ss_pred             HHHHH----HhhccccccchhhhHHHHHH----HhCCceEEEEEeCCCCH--HHHHHhhcCCCCCCCCcEEEEEeCCch-
Q 039455          102 LLSEV----LMERNLIIWDVHKGINLIRW----RLCRKRVLVVLDDVDQL--EQLQALAGNHDWFGFGSRIIITTRDEH-  170 (216)
Q Consensus       102 l~~~~----~~~~~~~~~~~~~~~~~l~~----~l~~~~~llvlDd~~~~--~~~~~l~~~~~~~~~~~~il~tsr~~~-  170 (216)
                      +...-    ...........+...+.+..    ...++.-++|||+++.+  +.+..++..+..-...+.+|++|.+.. 
T Consensus        82 i~~g~~~d~~eidaas~~~v~~iR~l~~~~~~~p~~~~~kV~iIDE~~~ls~~a~naLLk~LEepp~~~~fIlattd~~k  161 (509)
T PRK14958         82 IDEGRFPDLFEVDAASRTKVEDTRELLDNIPYAPTKGRFKVYLIDEVHMLSGHSFNALLKTLEEPPSHVKFILATTDHHK  161 (509)
T ss_pred             HhcCCCceEEEEcccccCCHHHHHHHHHHHhhccccCCcEEEEEEChHhcCHHHHHHHHHHHhccCCCeEEEEEECChHh
Confidence            00000    00000000011111111111    11245569999999865  456666655543345666776665542 


Q ss_pred             hhhcc-CCcceEEecCCChHHHHHHHhhhhcCCC
Q 039455          171 VLKGH-GVTNIYKVRGLDYVEALQLFHLKVSKGK  203 (216)
Q Consensus       171 ~~~~~-~~~~~~~l~~l~~~~~~~ll~~~~~~~~  203 (216)
                      +...+ .....+++++++.++....+...+-..+
T Consensus       162 l~~tI~SRc~~~~f~~l~~~~i~~~l~~il~~eg  195 (509)
T PRK14958        162 LPVTVLSRCLQFHLAQLPPLQIAAHCQHLLKEEN  195 (509)
T ss_pred             chHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHcC
Confidence            22222 2237789999999988887766553333

>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family

Probab=99.05  E-value=5.2e-09  Score=93.79  Aligned_cols=154  Identities=14%  Similarity=0.103  Sum_probs=89.1

Q ss_pred             CcccccccchhHHHHHHHHHhcCCCCeeEEEEEecCCCcHHHHHHHHHHHhcCCC-C-----ceEeeccccccccccCch
Q 039455           23 SAVDGLVGIASRMEKMNGYLEAGLDDVRFIGICGMGGIGKTTLAKVLYNTLKDQF-E-----ASSFLANVREVSVTRGLV   96 (216)
Q Consensus        23 ~~~~~~vgR~~~~~~l~~~l~~~~~~~~~i~I~G~~GiGKTtL~~~~~~~~~~~~-~-----~~~~~~~~~~~~~~~~~~   96 (216)
                      ...++++||++++.++...|...  ....++++|++|+|||++++.++.++.... +     ..+|...++.+...... 
T Consensus       184 ~~ld~~iGr~~ei~~~i~~l~r~--~~~n~lLvG~pGvGKTal~~~La~~i~~~~v~~~l~~~~i~~l~l~~l~ag~~~-  260 (852)
T TIGR03345       184 GKIDPVLGRDDEIRQMIDILLRR--RQNNPILTGEAGVGKTAVVEGLALRIAAGDVPPALRNVRLLSLDLGLLQAGASV-  260 (852)
T ss_pred             CCCCcccCCHHHHHHHHHHHhcC--CcCceeEECCCCCCHHHHHHHHHHHHhhCCCCccccCCeEEEeehhhhhccccc-
Confidence            34568999999999999987754  235677999999999999999999875431 1     11221111110000000 


Q ss_pred             HHHHHHHHHHHhhccccccchhhhHH-HHHHHh-CCceEEEEEeCCCCHH---------HHHH-hhcCCCCCCCCcEEEE
Q 039455           97 PLQEQLLSEVLMERNLIIWDVHKGIN-LIRWRL-CRKRVLVVLDDVDQLE---------QLQA-LAGNHDWFGFGSRIII  164 (216)
Q Consensus        97 ~~~~~l~~~~~~~~~~~~~~~~~~~~-~l~~~l-~~~~~llvlDd~~~~~---------~~~~-l~~~~~~~~~~~~il~  164 (216)
                                       ..++..... .+.... .+++.+|+||+++..-         +... +.+.+.  .....+|-
T Consensus       261 -----------------~ge~e~~lk~ii~e~~~~~~~~ILfIDEih~l~~~g~~~~~~d~~n~Lkp~l~--~G~l~~Ig  321 (852)
T TIGR03345       261 -----------------KGEFENRLKSVIDEVKASPQPIILFIDEAHTLIGAGGQAGQGDAANLLKPALA--RGELRTIA  321 (852)
T ss_pred             -----------------chHHHHHHHHHHHHHHhcCCCeEEEEeChHHhccCCCccccccHHHHhhHHhh--CCCeEEEE
Confidence                             001111111 122222 2467899999986441         2222 333332  23356676


Q ss_pred             EeCCchhhhc-------cCCcceEEecCCChHHHHHHHhhh
Q 039455          165 TTRDEHVLKG-------HGVTNIYKVRGLDYVEALQLFHLK  198 (216)
Q Consensus       165 tsr~~~~~~~-------~~~~~~~~l~~l~~~~~~~ll~~~  198 (216)
                      +|...++...       ...+..+.+++++.+++.++|+..
T Consensus       322 aTT~~e~~~~~~~d~AL~rRf~~i~v~eps~~~~~~iL~~~  362 (852)
T TIGR03345       322 ATTWAEYKKYFEKDPALTRRFQVVKVEEPDEETAIRMLRGL  362 (852)
T ss_pred             ecCHHHHhhhhhccHHHHHhCeEEEeCCCCHHHHHHHHHHH
Confidence            6665433211       124578999999999999997543

Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.

>PRK14969 DNA polymerase III subunits gamma and tau; Provisional

Probab=99.05  E-value=4.9e-09  Score=89.37  Aligned_cols=171  Identities=15%  Similarity=0.128  Sum_probs=93.8

Q ss_pred             CCcccccccchhHHHHHHHHHhcCCCCeeEEEEEecCCCcHHHHHHHHHHHhcCCCCceEeeccccccccccCchHHHHH
Q 039455           22 PSAVDGLVGIASRMEKMNGYLEAGLDDVRFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLANVREVSVTRGLVPLQEQ  101 (216)
Q Consensus        22 ~~~~~~~vgR~~~~~~l~~~l~~~~~~~~~i~I~G~~GiGKTtL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  101 (216)
                      |..-.+++|.+...+.|..++..+ .-...+.++||+|+||||+|+.++..+..... ...-. +.       ....+..
T Consensus        12 P~~f~divGq~~v~~~L~~~i~~~-~~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~-~~~~p-cg-------~C~~C~~   81 (527)
T PRK14969         12 PKSFSELVGQEHVVRALTNALEQQ-RLHHAYLFTGTRGVGKTTLARILAKSLNCETG-VTATP-CG-------VCSACLE   81 (527)
T ss_pred             CCcHHHhcCcHHHHHHHHHHHHcC-CCCEEEEEECCCCCCHHHHHHHHHHHhcCCCC-CCCCC-CC-------CCHHHHH
Confidence            345567899999999999988753 22356789999999999999999987642110 00000 00       0000000


Q ss_pred             HHHH----HHhhccccccchhhhHHHHHH----HhCCceEEEEEeCCCCH--HHHHHhhcCCCCCCCCcEEEEEeCCc-h
Q 039455          102 LLSE----VLMERNLIIWDVHKGINLIRW----RLCRKRVLVVLDDVDQL--EQLQALAGNHDWFGFGSRIIITTRDE-H  170 (216)
Q Consensus       102 l~~~----~~~~~~~~~~~~~~~~~~l~~----~l~~~~~llvlDd~~~~--~~~~~l~~~~~~~~~~~~il~tsr~~-~  170 (216)
                      +...    +...........+.....+..    ...++.-++|||+++..  +....++..+..-...+.+|++|.+. .
T Consensus        82 i~~~~~~d~~ei~~~~~~~vd~ir~l~~~~~~~p~~~~~kVvIIDEad~ls~~a~naLLK~LEepp~~~~fIL~t~d~~k  161 (527)
T PRK14969         82 IDSGRFVDLIEVDAASNTQVDAMRELLDNAQYAPTRGRFKVYIIDEVHMLSKSAFNAMLKTLEEPPEHVKFILATTDPQK  161 (527)
T ss_pred             HhcCCCCceeEeeccccCCHHHHHHHHHHHhhCcccCCceEEEEcCcccCCHHHHHHHHHHHhCCCCCEEEEEEeCChhh
Confidence            0000    000000000011111111111    12345679999999865  34566665554434455666666543 2


Q ss_pred             hhhcc-CCcceEEecCCChHHHHHHHhhhhcCC
Q 039455          171 VLKGH-GVTNIYKVRGLDYVEALQLFHLKVSKG  202 (216)
Q Consensus       171 ~~~~~-~~~~~~~l~~l~~~~~~~ll~~~~~~~  202 (216)
                      +...+ .....+++++++.++..+.+.+.+...
T Consensus       162 il~tI~SRc~~~~f~~l~~~~i~~~L~~il~~e  194 (527)
T PRK14969        162 IPVTVLSRCLQFNLKQMPPPLIVSHLQHILEQE  194 (527)
T ss_pred             CchhHHHHHHHHhcCCCCHHHHHHHHHHHHHHc
Confidence            22221 123789999999999998888765333

>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional

Probab=99.04  E-value=6.2e-09  Score=85.72  Aligned_cols=168  Identities=18%  Similarity=0.206  Sum_probs=97.5

Q ss_pred             CcccccccchhHHHHHHHHHhc-----------CCCCeeEEEEEecCCCcHHHHHHHHHHHhcCCCCceEeecccccccc
Q 039455           23 SAVDGLVGIASRMEKMNGYLEA-----------GLDDVRFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLANVREVSV   91 (216)
Q Consensus        23 ~~~~~~vgR~~~~~~l~~~l~~-----------~~~~~~~i~I~G~~GiGKTtL~~~~~~~~~~~~~~~~~~~~~~~~~~   91 (216)
                      .....+.|-+...++|...+..           +-..++.+.++||+|+|||+|++.+++.....|  . .+.  .    
T Consensus       142 v~~~digGl~~~k~~l~~~v~~pl~~~~~~~~~Gl~~pkgvLL~GppGTGKT~LAkalA~~l~~~f--i-~i~--~----  212 (398)
T PTZ00454        142 VTYSDIGGLDIQKQEIREAVELPLTCPELYEQIGIDPPRGVLLYGPPGTGKTMLAKAVAHHTTATF--I-RVV--G----  212 (398)
T ss_pred             CCHHHcCCHHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhcCCCE--E-EEe--h----
Confidence            3456788999999988876541           112357899999999999999999998764322  1 111  0    


Q ss_pred             ccCchHHHHHHHHHHHhhccccccchhhhHHHHHHHhCCceEEEEEeCCCCHH----------------HHHHhhcCCCC
Q 039455           92 TRGLVPLQEQLLSEVLMERNLIIWDVHKGINLIRWRLCRKRVLVVLDDVDQLE----------------QLQALAGNHDW  155 (216)
Q Consensus        92 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~llvlDd~~~~~----------------~~~~l~~~~~~  155 (216)
                              ..+.....+.      ........+.......+.+|+|||++..-                .+..++..+..
T Consensus       213 --------s~l~~k~~ge------~~~~lr~lf~~A~~~~P~ILfIDEID~i~~~r~~~~~~~d~~~~r~l~~LL~~ld~  278 (398)
T PTZ00454        213 --------SEFVQKYLGE------GPRMVRDVFRLARENAPSIIFIDEVDSIATKRFDAQTGADREVQRILLELLNQMDG  278 (398)
T ss_pred             --------HHHHHHhcch------hHHHHHHHHHHHHhcCCeEEEEECHhhhccccccccCCccHHHHHHHHHHHHHhhc
Confidence                    0111110000      11112223333445678999999986430                12233322211


Q ss_pred             --CCCCcEEEEEeCCchhhhc--c---CCcceEEecCCChHHHHHHHhhhhcCCC-CCchhHhhhc
Q 039455          156 --FGFGSRIIITTRDEHVLKG--H---GVTNIYKVRGLDYVEALQLFHLKVSKGK-QPTDDRVELS  213 (216)
Q Consensus       156 --~~~~~~il~tsr~~~~~~~--~---~~~~~~~l~~l~~~~~~~ll~~~~~~~~-~~~~~~~~l~  213 (216)
                        ...+..+|+||+.++....  +   ..+..+++++.+.++..++|+.+....+ .++-++.+++
T Consensus       279 ~~~~~~v~VI~aTN~~d~LDpAllR~GRfd~~I~~~~P~~~~R~~Il~~~~~~~~l~~dvd~~~la  344 (398)
T PTZ00454        279 FDQTTNVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLIFQTITSKMNLSEEVDLEDFV  344 (398)
T ss_pred             cCCCCCEEEEEecCCchhCCHHHcCCCcccEEEEeCCcCHHHHHHHHHHHHhcCCCCcccCHHHHH
Confidence              1235677888886544322  1   2467799999999999999987664433 2222444444

>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed

Probab=99.04  E-value=3.4e-09  Score=93.00  Aligned_cols=147  Identities=24%  Similarity=0.363  Sum_probs=85.1

Q ss_pred             CCcccccccchhHHH---HHHHHHhcCCCCeeEEEEEecCCCcHHHHHHHHHHHhcCCCCceEeeccccccccccCchHH
Q 039455           22 PSAVDGLVGIASRME---KMNGYLEAGLDDVRFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLANVREVSVTRGLVPL   98 (216)
Q Consensus        22 ~~~~~~~vgR~~~~~---~l~~~l~~~~~~~~~i~I~G~~GiGKTtL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   98 (216)
                      |..-++|+|++..+.   .+.+.+..  ...+.+.|+||+|+||||||+.+++.....|.   .+.+. .    ..... 
T Consensus        24 P~tldd~vGQe~ii~~~~~L~~~i~~--~~~~slLL~GPpGtGKTTLA~aIA~~~~~~f~---~lna~-~----~~i~d-   92 (725)
T PRK13341         24 PRTLEEFVGQDHILGEGRLLRRAIKA--DRVGSLILYGPPGVGKTTLARIIANHTRAHFS---SLNAV-L----AGVKD-   92 (725)
T ss_pred             CCcHHHhcCcHHHhhhhHHHHHHHhc--CCCceEEEECCCCCCHHHHHHHHHHHhcCcce---eehhh-h----hhhHH-
Confidence            445667999999885   46666654  34468899999999999999999987654331   11100 0    00000 


Q ss_pred             HHHHHHHHHhhccccccchhhhHHHHHHHh--CCceEEEEEeCCCCH--HHHHHhhcCCCCCCCCcEEEEE--eCCchh-
Q 039455           99 QEQLLSEVLMERNLIIWDVHKGINLIRWRL--CRKRVLVVLDDVDQL--EQLQALAGNHDWFGFGSRIIIT--TRDEHV-  171 (216)
Q Consensus        99 ~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l--~~~~~llvlDd~~~~--~~~~~l~~~~~~~~~~~~il~t--sr~~~~-  171 (216)
                      ...                  ........+  .++..+|+|||++..  .+.+.++..+.   .+..++++  |.++.. 
T Consensus        93 ir~------------------~i~~a~~~l~~~~~~~IL~IDEIh~Ln~~qQdaLL~~lE---~g~IiLI~aTTenp~~~  151 (725)
T PRK13341         93 LRA------------------EVDRAKERLERHGKRTILFIDEVHRFNKAQQDALLPWVE---NGTITLIGATTENPYFE  151 (725)
T ss_pred             HHH------------------HHHHHHHHhhhcCCceEEEEeChhhCCHHHHHHHHHHhc---CceEEEEEecCCChHhh
Confidence            000                  111111111  135679999999754  33444554332   23333432  333221 


Q ss_pred             -hhc-cCCcceEEecCCChHHHHHHHhhhhc
Q 039455          172 -LKG-HGVTNIYKVRGLDYVEALQLFHLKVS  200 (216)
Q Consensus       172 -~~~-~~~~~~~~l~~l~~~~~~~ll~~~~~  200 (216)
                       ... ......++++|++.++...++.+.+.
T Consensus       152 l~~aL~SR~~v~~l~pLs~edi~~IL~~~l~  182 (725)
T PRK13341        152 VNKALVSRSRLFRLKSLSDEDLHQLLKRALQ  182 (725)
T ss_pred             hhhHhhccccceecCCCCHHHHHHHHHHHHH
Confidence             111 11246799999999999999987653

>PRK14952 DNA polymerase III subunits gamma and tau; Provisional

Probab=99.03  E-value=1.5e-08  Score=86.91  Aligned_cols=172  Identities=17%  Similarity=0.084  Sum_probs=95.4

Q ss_pred             CCcccccccchhHHHHHHHHHhcCCCCeeEEEEEecCCCcHHHHHHHHHHHhcCCCCceEeeccccccccccCchHHHHH
Q 039455           22 PSAVDGLVGIASRMEKMNGYLEAGLDDVRFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLANVREVSVTRGLVPLQEQ  101 (216)
Q Consensus        22 ~~~~~~~vgR~~~~~~l~~~l~~~~~~~~~i~I~G~~GiGKTtL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  101 (216)
                      |..-.+++|.+...+.|..++..+ .-...+.++||.|+||||+|+.++..+...... .+-. +.       ....+..
T Consensus         9 P~~f~eivGq~~i~~~L~~~i~~~-r~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~-~~~p-Cg-------~C~~C~~   78 (584)
T PRK14952          9 PATFAEVVGQEHVTEPLSSALDAG-RINHAYLFSGPRGCGKTSSARILARSLNCAQGP-TATP-CG-------VCESCVA   78 (584)
T ss_pred             CCcHHHhcCcHHHHHHHHHHHHcC-CCCeEEEEECCCCCCHHHHHHHHHHHhccccCC-CCCc-cc-------ccHHHHH
Confidence            344567999999999999998754 233567999999999999999999866421100 0000 00       0000111


Q ss_pred             HHHH---------HHhhccccccchhhhHHHHH-HHhCCceEEEEEeCCCCH--HHHHHhhcCCCCCCCCcEEEEEeCCc
Q 039455          102 LLSE---------VLMERNLIIWDVHKGINLIR-WRLCRKRVLVVLDDVDQL--EQLQALAGNHDWFGFGSRIIITTRDE  169 (216)
Q Consensus       102 l~~~---------~~~~~~~~~~~~~~~~~~l~-~~l~~~~~llvlDd~~~~--~~~~~l~~~~~~~~~~~~il~tsr~~  169 (216)
                      +...         +.........+...+...+. ....++.-++|||+++..  +..+.|+..+..-.....+|++|.+.
T Consensus        79 i~~~~~~~~dvieidaas~~gvd~iRel~~~~~~~P~~~~~KVvIIDEah~Lt~~A~NALLK~LEEpp~~~~fIL~tte~  158 (584)
T PRK14952         79 LAPNGPGSIDVVELDAASHGGVDDTRELRDRAFYAPAQSRYRIFIVDEAHMVTTAGFNALLKIVEEPPEHLIFIFATTEP  158 (584)
T ss_pred             hhcccCCCceEEEeccccccCHHHHHHHHHHHHhhhhcCCceEEEEECCCcCCHHHHHHHHHHHhcCCCCeEEEEEeCCh
Confidence            1000         00000000000111111111 112345569999999855  45666665555434556566655443


Q ss_pred             -hhhhcc-CCcceEEecCCChHHHHHHHhhhhcCCC
Q 039455          170 -HVLKGH-GVTNIYKVRGLDYVEALQLFHLKVSKGK  203 (216)
Q Consensus       170 -~~~~~~-~~~~~~~l~~l~~~~~~~ll~~~~~~~~  203 (216)
                       .+...+ .....+++.+++.++..+.+.+.+-..+
T Consensus       159 ~kll~TI~SRc~~~~F~~l~~~~i~~~L~~i~~~eg  194 (584)
T PRK14952        159 EKVLPTIRSRTHHYPFRLLPPRTMRALIARICEQEG  194 (584)
T ss_pred             HhhHHHHHHhceEEEeeCCCHHHHHHHHHHHHHHcC
Confidence             333222 2347899999999999999987654433

>KOG2028 consensus ATPase related to the helicase subunit of the Holliday junction resolvase [Replication, recombination and repair]

Probab=99.02  E-value=2.3e-09  Score=85.08  Aligned_cols=151  Identities=16%  Similarity=0.277  Sum_probs=91.8

Q ss_pred             CCcccccccchhHHHH---HHHHHhcCCCCeeEEEEEecCCCcHHHHHHHHHHHhcCCCCceEeeccccccccccCchHH
Q 039455           22 PSAVDGLVGIASRMEK---MNGYLEAGLDDVRFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLANVREVSVTRGLVPL   98 (216)
Q Consensus        22 ~~~~~~~vgR~~~~~~---l~~~l~~~~~~~~~i~I~G~~GiGKTtL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   98 (216)
                      |...+++||.+..+.+   |.+++.+  +..+.+++|||+|+||||||+.++...+.+.  .+|+....    ...-..-
T Consensus       134 PktL~dyvGQ~hlv~q~gllrs~ieq--~~ipSmIlWGppG~GKTtlArlia~tsk~~S--yrfvelSA----t~a~t~d  205 (554)
T KOG2028|consen  134 PKTLDDYVGQSHLVGQDGLLRSLIEQ--NRIPSMILWGPPGTGKTTLARLIASTSKKHS--YRFVELSA----TNAKTND  205 (554)
T ss_pred             cchHHHhcchhhhcCcchHHHHHHHc--CCCCceEEecCCCCchHHHHHHHHhhcCCCc--eEEEEEec----cccchHH
Confidence            3445678888776654   3334443  5678999999999999999999998665543  44444111    1122222


Q ss_pred             HHHHHHHHHhhccccccchhhhHHHHHHHhCCceEEEEEeCCCCH--HHHHHhhcCCCCCCCCcEEE--EEeCCchhhhc
Q 039455           99 QEQLLSEVLMERNLIIWDVHKGINLIRWRLCRKRVLVVLDDVDQL--EQLQALAGNHDWFGFGSRII--ITTRDEHVLKG  174 (216)
Q Consensus        99 ~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~llvlDd~~~~--~~~~~l~~~~~~~~~~~~il--~tsr~~~~~~~  174 (216)
                      ...++.+-..                ...+.+++.+|++|++...  .+-+.+++...   .|.-++  .||-++.+.-.
T Consensus       206 vR~ife~aq~----------------~~~l~krkTilFiDEiHRFNksQQD~fLP~VE---~G~I~lIGATTENPSFqln  266 (554)
T KOG2028|consen  206 VRDIFEQAQN----------------EKSLTKRKTILFIDEIHRFNKSQQDTFLPHVE---NGDITLIGATTENPSFQLN  266 (554)
T ss_pred             HHHHHHHHHH----------------HHhhhcceeEEEeHHhhhhhhhhhhcccceec---cCceEEEecccCCCccchh
Confidence            2223222111                1134467889999999754  33344555443   444333  36666655222


Q ss_pred             ---cCCcceEEecCCChHHHHHHHhhhh
Q 039455          175 ---HGVTNIYKVRGLDYVEALQLFHLKV  199 (216)
Q Consensus       175 ---~~~~~~~~l~~l~~~~~~~ll~~~~  199 (216)
                         +..-.++.|++|+.++...+|.+..
T Consensus       267 ~aLlSRC~VfvLekL~~n~v~~iL~rai  294 (554)
T KOG2028|consen  267 AALLSRCRVFVLEKLPVNAVVTILMRAI  294 (554)
T ss_pred             HHHHhccceeEeccCCHHHHHHHHHHHH
Confidence               2334789999999999999998743

>PRK07764 DNA polymerase III subunits gamma and tau; Validated

Probab=99.01  E-value=1.1e-08  Score=90.89  Aligned_cols=166  Identities=14%  Similarity=0.071  Sum_probs=96.1

Q ss_pred             CCcccccccchhHHHHHHHHHhcCCCCeeEEEEEecCCCcHHHHHHHHHHHhcCCC-----CceEeeccccccccccCch
Q 039455           22 PSAVDGLVGIASRMEKMNGYLEAGLDDVRFIGICGMGGIGKTTLAKVLYNTLKDQF-----EASSFLANVREVSVTRGLV   96 (216)
Q Consensus        22 ~~~~~~~vgR~~~~~~l~~~l~~~~~~~~~i~I~G~~GiGKTtL~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~   96 (216)
                      |..-.+++|.+..++.|..++... .-...++++|+.|+||||+++.++..+....     ++...              
T Consensus        11 P~~f~eiiGqe~v~~~L~~~i~~~-ri~Ha~Lf~Gp~G~GKTt~A~~lAr~L~C~~~~~~~pCg~C--------------   75 (824)
T PRK07764         11 PATFAEVIGQEHVTEPLSTALDSG-RINHAYLFSGPRGCGKTSSARILARSLNCVEGPTSTPCGEC--------------   75 (824)
T ss_pred             CCCHHHhcCcHHHHHHHHHHHHhC-CCCceEEEECCCCCCHHHHHHHHHHHhCcccCCCCCCCccc--------------
Confidence            334567999999999999988753 2335689999999999999999998764211     11110              


Q ss_pred             HHHHHHHHHHHhh------ccccccchhhhHH---H-HHHHhCCceEEEEEeCCCCH--HHHHHhhcCCCCCCCCcEEEE
Q 039455           97 PLQEQLLSEVLME------RNLIIWDVHKGIN---L-IRWRLCRKRVLVVLDDVDQL--EQLQALAGNHDWFGFGSRIII  164 (216)
Q Consensus        97 ~~~~~l~~~~~~~------~~~~~~~~~~~~~---~-l~~~l~~~~~llvlDd~~~~--~~~~~l~~~~~~~~~~~~il~  164 (216)
                      ..+..+.......      ........+....   . ......++.-++|||+++.+  +..+.|+..+..-...+.+|+
T Consensus        76 ~sC~~~~~g~~~~~dv~eidaas~~~Vd~iR~l~~~~~~~p~~~~~KV~IIDEad~lt~~a~NaLLK~LEEpP~~~~fIl  155 (824)
T PRK07764         76 DSCVALAPGGPGSLDVTEIDAASHGGVDDARELRERAFFAPAESRYKIFIIDEAHMVTPQGFNALLKIVEEPPEHLKFIF  155 (824)
T ss_pred             HHHHHHHcCCCCCCcEEEecccccCCHHHHHHHHHHHHhchhcCCceEEEEechhhcCHHHHHHHHHHHhCCCCCeEEEE
Confidence            0000000000000      0000001111111   1 11123355668999999865  445566655554445666666


Q ss_pred             EeCCch-hhhcc-CCcceEEecCCChHHHHHHHhhhhcCC
Q 039455          165 TTRDEH-VLKGH-GVTNIYKVRGLDYVEALQLFHLKVSKG  202 (216)
Q Consensus       165 tsr~~~-~~~~~-~~~~~~~l~~l~~~~~~~ll~~~~~~~  202 (216)
                      +|.+.+ +...+ ...+.+++.+++.++..+++.+.+-..
T Consensus       156 ~tt~~~kLl~TIrSRc~~v~F~~l~~~~l~~~L~~il~~E  195 (824)
T PRK07764        156 ATTEPDKVIGTIRSRTHHYPFRLVPPEVMRGYLERICAQE  195 (824)
T ss_pred             EeCChhhhhHHHHhheeEEEeeCCCHHHHHHHHHHHHHHc
Confidence            665443 33332 235789999999999999998765333

>PRK09112 DNA polymerase III subunit delta'; Validated

Probab=98.99  E-value=4.7e-08  Score=79.29  Aligned_cols=170  Identities=17%  Similarity=0.106  Sum_probs=96.6

Q ss_pred             CCCCcccccccchhHHHHHHHHHhcCCCCeeEEEEEecCCCcHHHHHHHHHHHhcCCC-----CceEeeccccccccccC
Q 039455           20 TFPSAVDGLVGIASRMEKMNGYLEAGLDDVRFIGICGMGGIGKTTLAKVLYNTLKDQF-----EASSFLANVREVSVTRG   94 (216)
Q Consensus        20 ~~~~~~~~~vgR~~~~~~l~~~l~~~~~~~~~i~I~G~~GiGKTtL~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~   94 (216)
                      .+|.....++|.++..+.|...+..+ .-...+.++|+.|+||||++..++..+...-     +...-..        ..
T Consensus        17 ~~P~~~~~l~Gh~~a~~~L~~a~~~g-rl~ha~L~~G~~G~GKttlA~~lA~~Llc~~~~~~~~~~~~~~--------~~   87 (351)
T PRK09112         17 PSPSENTRLFGHEEAEAFLAQAYREG-KLHHALLFEGPEGIGKATLAFHLANHILSHPDPAEAPETLADP--------DP   87 (351)
T ss_pred             CCCCchhhccCcHHHHHHHHHHHHcC-CCCeeEeeECCCCCCHHHHHHHHHHHHcCCCccccCccccCCC--------CC
Confidence            35667788999999999999988754 2335799999999999999999998765421     1100000        00


Q ss_pred             chHHHHHHHHH-------HHh---hcc---ccccchhhhHHHHHHHh-----CCceEEEEEeCCCCH--HHHHHhhcCCC
Q 039455           95 LVPLQEQLLSE-------VLM---ERN---LIIWDVHKGINLIRWRL-----CRKRVLVVLDDVDQL--EQLQALAGNHD  154 (216)
Q Consensus        95 ~~~~~~~l~~~-------~~~---~~~---~~~~~~~~~~~~l~~~l-----~~~~~llvlDd~~~~--~~~~~l~~~~~  154 (216)
                      -...+..+...       +..   ...   ......+.. ..+.+.+     .++..++|||+++..  ...+.++..+.
T Consensus        88 ~c~~c~~i~~~~hPdl~~l~~~~~~~~~~~~~~I~vd~i-R~l~~~l~~~~~~g~~rVviIDeAd~l~~~aanaLLk~LE  166 (351)
T PRK09112         88 ASPVWRQIAQGAHPNLLHITRPFDEKTGKFKTAITVDEI-RRVGHFLSQTSGDGNWRIVIIDPADDMNRNAANAILKTLE  166 (351)
T ss_pred             CCHHHHHHHcCCCCCEEEeecccccccccccccCCHHHH-HHHHHHhhhccccCCceEEEEEchhhcCHHHHHHHHHHHh
Confidence            01111111110       000   000   000011111 1222222     245679999999754  33455554443


Q ss_pred             CCCCCcEEEEEeCCc-hhhhcc-CCcceEEecCCChHHHHHHHhhhh
Q 039455          155 WFGFGSRIIITTRDE-HVLKGH-GVTNIYKVRGLDYVEALQLFHLKV  199 (216)
Q Consensus       155 ~~~~~~~il~tsr~~-~~~~~~-~~~~~~~l~~l~~~~~~~ll~~~~  199 (216)
                      .-..+..+|++|+.+ .+...+ .....+.+.|++.++..+++....
T Consensus       167 Epp~~~~fiLit~~~~~llptIrSRc~~i~l~pl~~~~~~~~L~~~~  213 (351)
T PRK09112        167 EPPARALFILISHSSGRLLPTIRSRCQPISLKPLDDDELKKALSHLG  213 (351)
T ss_pred             cCCCCceEEEEECChhhccHHHHhhccEEEecCCCHHHHHHHHHHhh
Confidence            323445555555544 232222 123799999999999999998743

>PRK07940 DNA polymerase III subunit delta'; Validated

Probab=98.99  E-value=2.7e-08  Score=81.84  Aligned_cols=162  Identities=14%  Similarity=0.068  Sum_probs=88.8

Q ss_pred             cccccchhHHHHHHHHHhcCCC--------CeeEEEEEecCCCcHHHHHHHHHHHhcCCCCceEeeccccccccccCchH
Q 039455           26 DGLVGIASRMEKMNGYLEAGLD--------DVRFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLANVREVSVTRGLVP   97 (216)
Q Consensus        26 ~~~vgR~~~~~~l~~~l~~~~~--------~~~~i~I~G~~GiGKTtL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   97 (216)
                      ++++|.+..++.|.+.+.....        -...+.++||+|+|||++|+.++..+....+.  +.. ++.       ..
T Consensus         5 ~~IiGq~~~~~~L~~~i~~~~~~~~~~~~~l~ha~Lf~Gp~G~GKt~lA~~lA~~l~c~~~~--~~~-Cg~-------C~   74 (394)
T PRK07940          5 DDLVGQEAVVAELRAAARAARADVAAAGSGMTHAWLFTGPPGSGRSVAARAFAAALQCTDPD--EPG-CGE-------CR   74 (394)
T ss_pred             hhccChHHHHHHHHHHHHhccccccccCCCCCeEEEEECCCCCcHHHHHHHHHHHhCCCCCC--CCC-CCC-------CH
Confidence            4588999999999998875421        35679999999999999999999865432110  000 000       00


Q ss_pred             HHHHHHHHHHhh-----ccccccchhhhHHHHHHH-----hCCceEEEEEeCCCCH--HHHHHhhcCCCCCCCCcEEEEE
Q 039455           98 LQEQLLSEVLME-----RNLIIWDVHKGINLIRWR-----LCRKRVLVVLDDVDQL--EQLQALAGNHDWFGFGSRIIIT  165 (216)
Q Consensus        98 ~~~~l~~~~~~~-----~~~~~~~~~~~~~~l~~~-----l~~~~~llvlDd~~~~--~~~~~l~~~~~~~~~~~~il~t  165 (216)
                      .+..+.......     ........+... .+.+.     ..++..+++||+++..  .....++..+..-..+..+|++
T Consensus        75 ~C~~~~~~~hpD~~~i~~~~~~i~i~~iR-~l~~~~~~~p~~~~~kViiIDead~m~~~aanaLLk~LEep~~~~~fIL~  153 (394)
T PRK07940         75 ACRTVLAGTHPDVRVVAPEGLSIGVDEVR-ELVTIAARRPSTGRWRIVVIEDADRLTERAANALLKAVEEPPPRTVWLLC  153 (394)
T ss_pred             HHHHHhcCCCCCEEEeccccccCCHHHHH-HHHHHHHhCcccCCcEEEEEechhhcCHHHHHHHHHHhhcCCCCCeEEEE
Confidence            000000000000     000000011111 11111     1245568999999855  3344455544432345556666


Q ss_pred             eCCc-hhhhcc-CCcceEEecCCChHHHHHHHhhh
Q 039455          166 TRDE-HVLKGH-GVTNIYKVRGLDYVEALQLFHLK  198 (216)
Q Consensus       166 sr~~-~~~~~~-~~~~~~~l~~l~~~~~~~ll~~~  198 (216)
                      |.+. .+...+ .....+.+++++.++..+++.+.
T Consensus       154 a~~~~~llpTIrSRc~~i~f~~~~~~~i~~~L~~~  188 (394)
T PRK07940        154 APSPEDVLPTIRSRCRHVALRTPSVEAVAEVLVRR  188 (394)
T ss_pred             ECChHHChHHHHhhCeEEECCCCCHHHHHHHHHHh
Confidence            5554 333332 23478999999999999998754

>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]

Probab=98.99  E-value=1.3e-09  Score=83.80  Aligned_cols=68  Identities=12%  Similarity=0.165  Sum_probs=44.3

Q ss_pred             cchhhhHHHHHHHhCCceEEEEEeCCCCH----H--HHHHhhcCCCCCCCCcEEEEEeCCchhhhccCCcceEEec
Q 039455          115 WDVHKGINLIRWRLCRKRVLVVLDDVDQL----E--QLQALAGNHDWFGFGSRIIITTRDEHVLKGHGVTNIYKVR  184 (216)
Q Consensus       115 ~~~~~~~~~l~~~l~~~~~llvlDd~~~~----~--~~~~l~~~~~~~~~~~~il~tsr~~~~~~~~~~~~~~~l~  184 (216)
                      +..+.....+++.+.+++-+|++|+.-+.    .  ++-+++..+. ..++..+|+++|+...+..+ +++.+-++
T Consensus       140 SGGerQrv~iArALaQ~~~iLLLDEPTs~LDi~~Q~evl~ll~~l~-~~~~~tvv~vlHDlN~A~ry-ad~~i~lk  213 (258)
T COG1120         140 SGGERQRVLIARALAQETPILLLDEPTSHLDIAHQIEVLELLRDLN-REKGLTVVMVLHDLNLAARY-ADHLILLK  213 (258)
T ss_pred             ChhHHHHHHHHHHHhcCCCEEEeCCCccccCHHHHHHHHHHHHHHH-HhcCCEEEEEecCHHHHHHh-CCEEEEEE
Confidence            34455566789999999999999987432    1  1222222222 13468899999999988887 55444444

>PRK10865 protein disaggregation chaperone; Provisional

Probab=98.99  E-value=1.3e-08  Score=91.49  Aligned_cols=154  Identities=9%  Similarity=0.063  Sum_probs=88.2

Q ss_pred             cccccccchhHHHHHHHHHhcCCCCeeEEEEEecCCCcHHHHHHHHHHHhcCCC------CceEeeccccccccccCchH
Q 039455           24 AVDGLVGIASRMEKMNGYLEAGLDDVRFIGICGMGGIGKTTLAKVLYNTLKDQF------EASSFLANVREVSVTRGLVP   97 (216)
Q Consensus        24 ~~~~~vgR~~~~~~l~~~l~~~~~~~~~i~I~G~~GiGKTtL~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~   97 (216)
                      ..++++||+.++.++...|...  ....++++|++|+|||++++.++.++.+..      ...+|...+..         
T Consensus       176 ~l~~vigr~~ei~~~i~iL~r~--~~~n~lL~G~pGvGKT~l~~~la~~i~~~~vp~~l~~~~~~~l~l~~---------  244 (857)
T PRK10865        176 KLDPVIGRDEEIRRTIQVLQRR--TKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPEGLKGRRVLALDMGA---------  244 (857)
T ss_pred             CCCcCCCCHHHHHHHHHHHhcC--CcCceEEECCCCCCHHHHHHHHHHHhhcCCCchhhCCCEEEEEehhh---------
Confidence            4567999999999999988754  235677999999999999999999875421      11122111111         


Q ss_pred             HHHHHHHHHHhhccccccchhhhHH-HHHHHh-CCceEEEEEeCCCCHH---------HHHHhh-cCCCCCCCCcEEEEE
Q 039455           98 LQEQLLSEVLMERNLIIWDVHKGIN-LIRWRL-CRKRVLVVLDDVDQLE---------QLQALA-GNHDWFGFGSRIIIT  165 (216)
Q Consensus        98 ~~~~l~~~~~~~~~~~~~~~~~~~~-~l~~~l-~~~~~llvlDd~~~~~---------~~~~l~-~~~~~~~~~~~il~t  165 (216)
                          +...    .. ..-++..... .+.... ..++.+|+||+++.+-         +...++ +.+.  .....+|.+
T Consensus       245 ----l~ag----~~-~~g~~e~~lk~~~~~~~~~~~~~ILfIDEih~l~~~~~~~~~~d~~~~lkp~l~--~g~l~~Iga  313 (857)
T PRK10865        245 ----LVAG----AK-YRGEFEERLKGVLNDLAKQEGNVILFIDELHTMVGAGKADGAMDAGNMLKPALA--RGELHCVGA  313 (857)
T ss_pred             ----hhhc----cc-hhhhhHHHHHHHHHHHHHcCCCeEEEEecHHHhccCCCCccchhHHHHhcchhh--cCCCeEEEc
Confidence                0000    00 0001111122 222222 2467899999996542         233333 3332  234566666


Q ss_pred             eCCchhhhc-------cCCcceEEecCCChHHHHHHHhhhh
Q 039455          166 TRDEHVLKG-------HGVTNIYKVRGLDYVEALQLFHLKV  199 (216)
Q Consensus       166 sr~~~~~~~-------~~~~~~~~l~~l~~~~~~~ll~~~~  199 (216)
                      |...++...       ...+..+.+...+.++..++++...
T Consensus       314 Tt~~e~r~~~~~d~al~rRf~~i~v~eP~~~~~~~iL~~l~  354 (857)
T PRK10865        314 TTLDEYRQYIEKDAALERRFQKVFVAEPSVEDTIAILRGLK  354 (857)
T ss_pred             CCCHHHHHHhhhcHHHHhhCCEEEeCCCCHHHHHHHHHHHh
Confidence            665543211       1234567777779999999887543

>TIGR00678 holB DNA polymerase III, delta' subunit

Probab=98.99  E-value=4.7e-08  Score=72.70  Aligned_cols=80  Identities=15%  Similarity=0.119  Sum_probs=51.0

Q ss_pred             CceEEEEEeCCCCH--HHHHHhhcCCCCCCCCcEEEEEeCCc-hhhhcc-CCcceEEecCCChHHHHHHHhhhhcCCCCC
Q 039455          130 RKRVLVVLDDVDQL--EQLQALAGNHDWFGFGSRIIITTRDE-HVLKGH-GVTNIYKVRGLDYVEALQLFHLKVSKGKQP  205 (216)
Q Consensus       130 ~~~~llvlDd~~~~--~~~~~l~~~~~~~~~~~~il~tsr~~-~~~~~~-~~~~~~~l~~l~~~~~~~ll~~~~~~~~~~  205 (216)
                      +.+-++|+||++..  +....++..+..-.....+|++|++. .+...+ .....+++.|++.++..+++.+.    +.+
T Consensus        95 ~~~kviiide~~~l~~~~~~~Ll~~le~~~~~~~~il~~~~~~~l~~~i~sr~~~~~~~~~~~~~~~~~l~~~----gi~  170 (188)
T TIGR00678        95 SGRRVVIIEDAERMNEAAANALLKTLEEPPPNTLFILITPSPEKLLPTIRSRCQVLPFPPLSEEALLQWLIRQ----GIS  170 (188)
T ss_pred             CCeEEEEEechhhhCHHHHHHHHHHhcCCCCCeEEEEEECChHhChHHHHhhcEEeeCCCCCHHHHHHHHHHc----CCC
Confidence            45679999999765  33555555554434556677766654 222222 23468999999999999999887    234


Q ss_pred             chhHhhhc
Q 039455          206 TDDRVELS  213 (216)
Q Consensus       206 ~~~~~~l~  213 (216)
                      ++.++.|+
T Consensus       171 ~~~~~~i~  178 (188)
T TIGR00678       171 EEAAELLL  178 (188)
T ss_pred             HHHHHHHH
Confidence            44555443

At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.

>CHL00095 clpC Clp protease ATP binding subunit

Probab=98.98  E-value=5.2e-09  Score=93.84  Aligned_cols=150  Identities=15%  Similarity=0.120  Sum_probs=88.3

Q ss_pred             cccccchhHHHHHHHHHhcCCCCeeEEEEEecCCCcHHHHHHHHHHHhcCC-CC-----ceEeeccccccccccCchHHH
Q 039455           26 DGLVGIASRMEKMNGYLEAGLDDVRFIGICGMGGIGKTTLAKVLYNTLKDQ-FE-----ASSFLANVREVSVTRGLVPLQ   99 (216)
Q Consensus        26 ~~~vgR~~~~~~l~~~l~~~~~~~~~i~I~G~~GiGKTtL~~~~~~~~~~~-~~-----~~~~~~~~~~~~~~~~~~~~~   99 (216)
                      ++.+||+++++++...|....  ...++++|++|+|||++++.++.++... .+     ..+|..+...           
T Consensus       179 ~~~igr~~ei~~~~~~L~r~~--~~n~lL~G~pGvGKTal~~~la~~i~~~~vp~~l~~~~i~~l~~~~-----------  245 (821)
T CHL00095        179 DPVIGREKEIERVIQILGRRT--KNNPILIGEPGVGKTAIAEGLAQRIVNRDVPDILEDKLVITLDIGL-----------  245 (821)
T ss_pred             CCCCCcHHHHHHHHHHHcccc--cCCeEEECCCCCCHHHHHHHHHHHHHhCCCChhhcCCeEEEeeHHH-----------
Confidence            578999999999999987542  3466899999999999999999976532 11     2333221111           


Q ss_pred             HHHHHHHHhhccccccchhhhHHHH-HHHhCCceEEEEEeCCCCHH---------HHHHhhc-CCCCCCCCcEEEEEeCC
Q 039455          100 EQLLSEVLMERNLIIWDVHKGINLI-RWRLCRKRVLVVLDDVDQLE---------QLQALAG-NHDWFGFGSRIIITTRD  168 (216)
Q Consensus       100 ~~l~~~~~~~~~~~~~~~~~~~~~l-~~~l~~~~~llvlDd~~~~~---------~~~~l~~-~~~~~~~~~~il~tsr~  168 (216)
                        ++.    ...+ ..+++.....+ ......++.+|+||+++.+-         +...++. .+.  ....++|.+|..
T Consensus       246 --l~a----g~~~-~ge~e~rl~~i~~~~~~~~~~ILfiDEih~l~~~g~~~g~~~~a~lLkp~l~--rg~l~~IgaTt~  316 (821)
T CHL00095        246 --LLA----GTKY-RGEFEERLKRIFDEIQENNNIILVIDEVHTLIGAGAAEGAIDAANILKPALA--RGELQCIGATTL  316 (821)
T ss_pred             --Hhc----cCCC-ccHHHHHHHHHHHHHHhcCCeEEEEecHHHHhcCCCCCCcccHHHHhHHHHh--CCCcEEEEeCCH
Confidence              110    0000 11122222222 22223567899999995331         2233332 222  233566666665


Q ss_pred             chhhhc-------cCCcceEEecCCChHHHHHHHhh
Q 039455          169 EHVLKG-------HGVTNIYKVRGLDYVEALQLFHL  197 (216)
Q Consensus       169 ~~~~~~-------~~~~~~~~l~~l~~~~~~~ll~~  197 (216)
                      .++...       ...+..+.++..+.++..++++.
T Consensus       317 ~ey~~~ie~D~aL~rRf~~I~v~ep~~~e~~aILr~  352 (821)
T CHL00095        317 DEYRKHIEKDPALERRFQPVYVGEPSVEETIEILFG  352 (821)
T ss_pred             HHHHHHHhcCHHHHhcceEEecCCCCHHHHHHHHHH
Confidence            544221       12457789999999998888864

>PRK05896 DNA polymerase III subunits gamma and tau; Validated

Probab=98.97  E-value=1.5e-08  Score=86.50  Aligned_cols=181  Identities=15%  Similarity=0.121  Sum_probs=95.3

Q ss_pred             CCcccccccchhHHHHHHHHHhcCCCCeeEEEEEecCCCcHHHHHHHHHHHhcCCCCceEeeccccccccccCchHHHHH
Q 039455           22 PSAVDGLVGIASRMEKMNGYLEAGLDDVRFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLANVREVSVTRGLVPLQEQ  101 (216)
Q Consensus        22 ~~~~~~~vgR~~~~~~l~~~l~~~~~~~~~i~I~G~~GiGKTtL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  101 (216)
                      |..-.+++|++..++.|...+..+ .-...+.++||+|+||||+|+.++..+...-+...  ..+..       ...+..
T Consensus        12 P~~F~dIIGQe~iv~~L~~aI~~~-rl~hA~Lf~GP~GvGKTTlA~~lAk~L~C~~~~~~--~~Cg~-------C~sCr~   81 (605)
T PRK05896         12 PHNFKQIIGQELIKKILVNAILNN-KLTHAYIFSGPRGIGKTSIAKIFAKAINCLNPKDG--DCCNS-------CSVCES   81 (605)
T ss_pred             CCCHHHhcCcHHHHHHHHHHHHcC-CCCceEEEECCCCCCHHHHHHHHHHHhcCCCCCCC--CCCcc-------cHHHHH
Confidence            344567899999999999988653 22367899999999999999999987642211000  00000       001111


Q ss_pred             HHHHH-------HhhccccccchhhhHHHHHH-HhCCceEEEEEeCCCCH--HHHHHhhcCCCCCCCCcEEEEEeCCc-h
Q 039455          102 LLSEV-------LMERNLIIWDVHKGINLIRW-RLCRKRVLVVLDDVDQL--EQLQALAGNHDWFGFGSRIIITTRDE-H  170 (216)
Q Consensus       102 l~~~~-------~~~~~~~~~~~~~~~~~l~~-~l~~~~~llvlDd~~~~--~~~~~l~~~~~~~~~~~~il~tsr~~-~  170 (216)
                      +....       .........+.......+.. ...++.-++|+|+++..  +....++..+..-.....+|++|... .
T Consensus        82 i~~~~h~DiieIdaas~igVd~IReIi~~~~~~P~~~~~KVIIIDEad~Lt~~A~NaLLKtLEEPp~~tvfIL~Tt~~~K  161 (605)
T PRK05896         82 INTNQSVDIVELDAASNNGVDEIRNIIDNINYLPTTFKYKVYIIDEAHMLSTSAWNALLKTLEEPPKHVVFIFATTEFQK  161 (605)
T ss_pred             HHcCCCCceEEeccccccCHHHHHHHHHHHHhchhhCCcEEEEEechHhCCHHHHHHHHHHHHhCCCcEEEEEECCChHh
Confidence            10000       00000000001111111110 11234457999999764  44555554443223345555555433 2


Q ss_pred             hhhc-cCCcceEEecCCChHHHHHHHhhhhcCCC--CCchhHhhh
Q 039455          171 VLKG-HGVTNIYKVRGLDYVEALQLFHLKVSKGK--QPTDDRVEL  212 (216)
Q Consensus       171 ~~~~-~~~~~~~~l~~l~~~~~~~ll~~~~~~~~--~~~~~~~~l  212 (216)
                      +... ......+++.+++.++....+...+...+  .+++.++.|
T Consensus       162 Ll~TI~SRcq~ieF~~Ls~~eL~~~L~~il~kegi~Is~eal~~L  206 (605)
T PRK05896        162 IPLTIISRCQRYNFKKLNNSELQELLKSIAKKEKIKIEDNAIDKI  206 (605)
T ss_pred             hhHHHHhhhhhcccCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHH
Confidence            3222 22346899999999999999887654333  333444443

>PRK09111 DNA polymerase III subunits gamma and tau; Validated

Probab=98.97  E-value=2.5e-08  Score=85.99  Aligned_cols=172  Identities=16%  Similarity=0.162  Sum_probs=96.9

Q ss_pred             CCcccccccchhHHHHHHHHHhcCCCCeeEEEEEecCCCcHHHHHHHHHHHhcCCCCce----EeeccccccccccCchH
Q 039455           22 PSAVDGLVGIASRMEKMNGYLEAGLDDVRFIGICGMGGIGKTTLAKVLYNTLKDQFEAS----SFLANVREVSVTRGLVP   97 (216)
Q Consensus        22 ~~~~~~~vgR~~~~~~l~~~l~~~~~~~~~i~I~G~~GiGKTtL~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~   97 (216)
                      |..-.+++|.+..++.|.+++..+ .-...+.++|+.|+||||+|+.++..+....+..    .+-.|        ....
T Consensus        20 P~~f~dliGq~~~v~~L~~~~~~g-ri~ha~L~~Gp~GvGKTt~Ar~lAk~L~c~~~~~~~~~~~~~c--------g~c~   90 (598)
T PRK09111         20 PQTFDDLIGQEAMVRTLTNAFETG-RIAQAFMLTGVRGVGKTTTARILARALNYEGPDGDGGPTIDLC--------GVGE   90 (598)
T ss_pred             CCCHHHhcCcHHHHHHHHHHHHcC-CCCceEEEECCCCCCHHHHHHHHHHhhCcCCccccCCCccccC--------cccH
Confidence            345567999999999999988754 2345799999999999999999998764322110    01000        0011


Q ss_pred             HHHHHHHHHHh----hccccccchhhhHHHHHHH-----hCCceEEEEEeCCCCH--HHHHHhhcCCCCCCCCcEEEEEe
Q 039455           98 LQEQLLSEVLM----ERNLIIWDVHKGINLIRWR-----LCRKRVLVVLDDVDQL--EQLQALAGNHDWFGFGSRIIITT  166 (216)
Q Consensus        98 ~~~~l~~~~~~----~~~~~~~~~~~~~~~l~~~-----l~~~~~llvlDd~~~~--~~~~~l~~~~~~~~~~~~il~ts  166 (216)
                      .+..+......    .........+...+ +...     +.++.-++|||+++..  ...+.++..+..-...+.+|++|
T Consensus        91 ~C~~i~~g~h~Dv~e~~a~s~~gvd~IRe-Iie~~~~~P~~a~~KVvIIDEad~Ls~~a~naLLKtLEePp~~~~fIl~t  169 (598)
T PRK09111         91 HCQAIMEGRHVDVLEMDAASHTGVDDIRE-IIESVRYRPVSARYKVYIIDEVHMLSTAAFNALLKTLEEPPPHVKFIFAT  169 (598)
T ss_pred             HHHHHhcCCCCceEEecccccCCHHHHHH-HHHHHHhchhcCCcEEEEEEChHhCCHHHHHHHHHHHHhCCCCeEEEEEe
Confidence            11111110000    00000011111111 1111     2235568999999755  44566665554334566676666


Q ss_pred             CCc-hhhhcc-CCcceEEecCCChHHHHHHHhhhhcCCC
Q 039455          167 RDE-HVLKGH-GVTNIYKVRGLDYVEALQLFHLKVSKGK  203 (216)
Q Consensus       167 r~~-~~~~~~-~~~~~~~l~~l~~~~~~~ll~~~~~~~~  203 (216)
                      ... .+...+ .....+++++++.++....+.+.+-..+
T Consensus       170 te~~kll~tI~SRcq~~~f~~l~~~el~~~L~~i~~keg  208 (598)
T PRK09111        170 TEIRKVPVTVLSRCQRFDLRRIEADVLAAHLSRIAAKEG  208 (598)
T ss_pred             CChhhhhHHHHhheeEEEecCCCHHHHHHHHHHHHHHcC
Confidence            443 222222 2337899999999999999988664433

>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional

Probab=98.97  E-value=6.2e-09  Score=86.41  Aligned_cols=157  Identities=18%  Similarity=0.227  Sum_probs=93.4

Q ss_pred             CcccccccchhHHHHHHHHHhcC-----------CCCeeEEEEEecCCCcHHHHHHHHHHHhcCCCCceEeecccccccc
Q 039455           23 SAVDGLVGIASRMEKMNGYLEAG-----------LDDVRFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLANVREVSV   91 (216)
Q Consensus        23 ~~~~~~vgR~~~~~~l~~~l~~~-----------~~~~~~i~I~G~~GiGKTtL~~~~~~~~~~~~~~~~~~~~~~~~~~   91 (216)
                      ....+..|.+.++++|...+...           -.....++|+||+|+|||++|+.+++.....|  ..+..  ..   
T Consensus       180 ~~~~DIgGl~~qi~~l~e~v~lpl~~p~~~~~~gi~~p~gVLL~GPPGTGKT~LAraIA~el~~~f--i~V~~--se---  252 (438)
T PTZ00361        180 ESYADIGGLEQQIQEIKEAVELPLTHPELYDDIGIKPPKGVILYGPPGTGKTLLAKAVANETSATF--LRVVG--SE---  252 (438)
T ss_pred             CCHHHhcCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCcEEEEECCCCCCHHHHHHHHHHhhCCCE--EEEec--ch---
Confidence            34466789999999998876421           12346789999999999999999999765432  11110  00   


Q ss_pred             ccCchHHHHHHHHHHHhhccccccchhhhHHHHHHHhCCceEEEEEeCCCCHH----------------HHHHhhcCCCC
Q 039455           92 TRGLVPLQEQLLSEVLMERNLIIWDVHKGINLIRWRLCRKRVLVVLDDVDQLE----------------QLQALAGNHDW  155 (216)
Q Consensus        92 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~llvlDd~~~~~----------------~~~~l~~~~~~  155 (216)
                            +...+    .+.      ........+.......+.+|+||+++..-                .+..++..+..
T Consensus       253 ------L~~k~----~Ge------~~~~vr~lF~~A~~~~P~ILfIDEID~l~~kR~~~~sgg~~e~qr~ll~LL~~Ldg  316 (438)
T PTZ00361        253 ------LIQKY----LGD------GPKLVRELFRVAEENAPSIVFIDEIDAIGTKRYDATSGGEKEIQRTMLELLNQLDG  316 (438)
T ss_pred             ------hhhhh----cch------HHHHHHHHHHHHHhCCCcEEeHHHHHHHhccCCCCCCcccHHHHHHHHHHHHHHhh
Confidence                  11100    000      01112222333334578899999875321                12222222211


Q ss_pred             --CCCCcEEEEEeCCchhhhcc-----CCcceEEecCCChHHHHHHHhhhhcCC
Q 039455          156 --FGFGSRIIITTRDEHVLKGH-----GVTNIYKVRGLDYVEALQLFHLKVSKG  202 (216)
Q Consensus       156 --~~~~~~il~tsr~~~~~~~~-----~~~~~~~l~~l~~~~~~~ll~~~~~~~  202 (216)
                        ...+..||+||+..+.....     ..+..+++++.+.++..++|+.+....
T Consensus       317 ~~~~~~V~VI~ATNr~d~LDpaLlRpGRfd~~I~~~~Pd~~~R~~Il~~~~~k~  370 (438)
T PTZ00361        317 FDSRGDVKVIMATNRIESLDPALIRPGRIDRKIEFPNPDEKTKRRIFEIHTSKM  370 (438)
T ss_pred             hcccCCeEEEEecCChHHhhHHhccCCeeEEEEEeCCCCHHHHHHHHHHHHhcC
Confidence              12356788888865443321     246789999999999999999776443

>PRK05564 DNA polymerase III subunit delta'; Validated

Probab=98.96  E-value=5.8e-08  Score=77.94  Aligned_cols=153  Identities=16%  Similarity=0.168  Sum_probs=94.7

Q ss_pred             cccccchhHHHHHHHHHhcCCCCeeEEEEEecCCCcHHHHHHHHHHHhcCC-----CCceEeeccccccccccCchHHHH
Q 039455           26 DGLVGIASRMEKMNGYLEAGLDDVRFIGICGMGGIGKTTLAKVLYNTLKDQ-----FEASSFLANVREVSVTRGLVPLQE  100 (216)
Q Consensus        26 ~~~vgR~~~~~~l~~~l~~~~~~~~~i~I~G~~GiGKTtL~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~  100 (216)
                      ++.+|.+...+.|...+..+ .-...+.++||.|+|||++|+.++..+...     ++....+.....  ..... +-+.
T Consensus         4 ~~i~g~~~~~~~l~~~~~~~-~~~ha~Lf~G~~G~Gk~~la~~~a~~l~c~~~~~~h~D~~~~~~~~~--~~i~v-~~ir   79 (313)
T PRK05564          4 HTIIGHENIKNRIKNSIIKN-RFSHAHIIVGEDGIGKSLLAKEIALKILGKSQQREYVDIIEFKPINK--KSIGV-DDIR   79 (313)
T ss_pred             hhccCcHHHHHHHHHHHHcC-CCCceEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCeEEeccccC--CCCCH-HHHH
Confidence            45789998899999988754 344688999999999999999999865322     233322211000  00011 1111


Q ss_pred             HHHHHHHhhccccccchhhhHHHHHHHhCCceEEEEEeCCCC--HHHHHHhhcCCCCCCCCcEEEEEeCCch-hhhcc-C
Q 039455          101 QLLSEVLMERNLIIWDVHKGINLIRWRLCRKRVLVVLDDVDQ--LEQLQALAGNHDWFGFGSRIIITTRDEH-VLKGH-G  176 (216)
Q Consensus       101 ~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~llvlDd~~~--~~~~~~l~~~~~~~~~~~~il~tsr~~~-~~~~~-~  176 (216)
                      ++...+..                 ....+++-++|+|+++.  .+....++..+..-..++.+|++|++++ +...+ .
T Consensus        80 ~~~~~~~~-----------------~p~~~~~kv~iI~~ad~m~~~a~naLLK~LEepp~~t~~il~~~~~~~ll~TI~S  142 (313)
T PRK05564         80 NIIEEVNK-----------------KPYEGDKKVIIIYNSEKMTEQAQNAFLKTIEEPPKGVFIILLCENLEQILDTIKS  142 (313)
T ss_pred             HHHHHHhc-----------------CcccCCceEEEEechhhcCHHHHHHHHHHhcCCCCCeEEEEEeCChHhCcHHHHh
Confidence            11111100                 11234566888888864  4567777777765556777888876653 22222 2


Q ss_pred             CcceEEecCCChHHHHHHHhhhh
Q 039455          177 VTNIYKVRGLDYVEALQLFHLKV  199 (216)
Q Consensus       177 ~~~~~~l~~l~~~~~~~ll~~~~  199 (216)
                      ....+++.+++.++....+.+..
T Consensus       143 Rc~~~~~~~~~~~~~~~~l~~~~  165 (313)
T PRK05564        143 RCQIYKLNRLSKEEIEKFISYKY  165 (313)
T ss_pred             hceeeeCCCcCHHHHHHHHHHHh
Confidence            34789999999999998887653

>PRK07471 DNA polymerase III subunit delta'; Validated

Probab=98.96  E-value=4.8e-08  Score=79.64  Aligned_cols=176  Identities=15%  Similarity=0.094  Sum_probs=97.8

Q ss_pred             CCCcccccccchhHHHHHHHHHhcCCCCeeEEEEEecCCCcHHHHHHHHHHHhcCCCC--ceEeeccccccccccCchHH
Q 039455           21 FPSAVDGLVGIASRMEKMNGYLEAGLDDVRFIGICGMGGIGKTTLAKVLYNTLKDQFE--ASSFLANVREVSVTRGLVPL   98 (216)
Q Consensus        21 ~~~~~~~~vgR~~~~~~l~~~l~~~~~~~~~i~I~G~~GiGKTtL~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~   98 (216)
                      .|+....++|.++..+.|.+.+..+ .-...+.++||.|+||+++|..++..+-..-+  ..........+. ...-...
T Consensus        14 ~P~~~~~iiGq~~~~~~L~~~~~~~-rl~HA~Lf~Gp~G~GK~~lA~~~A~~Llc~~~~~~~~~~~~~~~l~-~~~~c~~   91 (365)
T PRK07471         14 HPRETTALFGHAAAEAALLDAYRSG-RLHHAWLIGGPQGIGKATLAYRMARFLLATPPPGGDGAVPPPTSLA-IDPDHPV   91 (365)
T ss_pred             CCCchhhccChHHHHHHHHHHHHcC-CCCceEEEECCCCCCHHHHHHHHHHHHhCCCCCCCCcccccccccc-CCCCChH
Confidence            4556678999999999999988764 23457999999999999999999986532211  100000000000 0000011


Q ss_pred             HHHHHHHHHhh---------ccc----cccchhhhHHHHHHHh-----CCceEEEEEeCCCCH--HHHHHhhcCCCCCCC
Q 039455           99 QEQLLSEVLME---------RNL----IIWDVHKGINLIRWRL-----CRKRVLVVLDDVDQL--EQLQALAGNHDWFGF  158 (216)
Q Consensus        99 ~~~l~~~~~~~---------~~~----~~~~~~~~~~~l~~~l-----~~~~~llvlDd~~~~--~~~~~l~~~~~~~~~  158 (216)
                      +..+...-...         ...    ..-..+. +..+.+.+     .+++.++||||++..  .....++..+..-..
T Consensus        92 c~~i~~~~HPDl~~i~~~~~~~~~~~~~~I~Vdq-iR~l~~~~~~~~~~~~~kVviIDead~m~~~aanaLLK~LEepp~  170 (365)
T PRK07471         92 ARRIAAGAHGGLLTLERSWNEKGKRLRTVITVDE-VRELISFFGLTAAEGGWRVVIVDTADEMNANAANALLKVLEEPPA  170 (365)
T ss_pred             HHHHHccCCCCeEEEecccccccccccccccHHH-HHHHHHHhCcCcccCCCEEEEEechHhcCHHHHHHHHHHHhcCCC
Confidence            11111000000         000    0001111 12222222     245679999999744  445555555443234


Q ss_pred             CcEEEEEeCCchh-hhcc-CCcceEEecCCChHHHHHHHhhhh
Q 039455          159 GSRIIITTRDEHV-LKGH-GVTNIYKVRGLDYVEALQLFHLKV  199 (216)
Q Consensus       159 ~~~il~tsr~~~~-~~~~-~~~~~~~l~~l~~~~~~~ll~~~~  199 (216)
                      +..+|++|+..+. ...+ .....+.+.|++.++..+++....
T Consensus       171 ~~~~IL~t~~~~~llpti~SRc~~i~l~~l~~~~i~~~L~~~~  213 (365)
T PRK07471        171 RSLFLLVSHAPARLLPTIRSRCRKLRLRPLAPEDVIDALAAAG  213 (365)
T ss_pred             CeEEEEEECCchhchHHhhccceEEECCCCCHHHHHHHHHHhc
Confidence            5667777776642 2222 235789999999999999998764

>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH

Probab=98.96  E-value=1.3e-08  Score=86.58  Aligned_cols=168  Identities=18%  Similarity=0.205  Sum_probs=94.7

Q ss_pred             cccccccchhHHHHHHHHHh---c-------CCCCeeEEEEEecCCCcHHHHHHHHHHHhcCCCCceEeecccccccccc
Q 039455           24 AVDGLVGIASRMEKMNGYLE---A-------GLDDVRFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLANVREVSVTR   93 (216)
Q Consensus        24 ~~~~~vgR~~~~~~l~~~l~---~-------~~~~~~~i~I~G~~GiGKTtL~~~~~~~~~~~~~~~~~~~~~~~~~~~~   93 (216)
                      .-++++|-++..+++..++.   .       +....+.+.++||+|+|||+|++.++....-.     ++...       
T Consensus        53 ~~~di~g~~~~k~~l~~~~~~l~~~~~~~~~g~~~~~giLL~GppGtGKT~la~alA~~~~~~-----~~~i~-------  120 (495)
T TIGR01241        53 TFKDVAGIDEAKEELMEIVDFLKNPSKFTKLGAKIPKGVLLVGPPGTGKTLLAKAVAGEAGVP-----FFSIS-------  120 (495)
T ss_pred             CHHHhCCHHHHHHHHHHHHHHHHCHHHHHhcCCCCCCcEEEECCCCCCHHHHHHHHHHHcCCC-----eeecc-------
Confidence            44578898888777665443   1       12234579999999999999999999865322     11100       


Q ss_pred             CchHHHHHHHHHHHhhccccccchhhhHHHHHHHhCCceEEEEEeCCCCHH----------------HHHHhhcCCCCC-
Q 039455           94 GLVPLQEQLLSEVLMERNLIIWDVHKGINLIRWRLCRKRVLVVLDDVDQLE----------------QLQALAGNHDWF-  156 (216)
Q Consensus        94 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~llvlDd~~~~~----------------~~~~l~~~~~~~-  156 (216)
                       ..    .+.....+      .........+.......+.+|+|||++...                .+..++..+... 
T Consensus       121 -~~----~~~~~~~g------~~~~~l~~~f~~a~~~~p~Il~iDEid~l~~~r~~~~~~~~~~~~~~~~~lL~~~d~~~  189 (495)
T TIGR01241       121 -GS----DFVEMFVG------VGASRVRDLFEQAKKNAPCIIFIDEIDAVGRQRGAGLGGGNDEREQTLNQLLVEMDGFG  189 (495)
T ss_pred             -HH----HHHHHHhc------ccHHHHHHHHHHHHhcCCCEEEEechhhhhhccccCcCCccHHHHHHHHHHHhhhcccc
Confidence             00    11111000      011223334444555678999999996531                122333222211 


Q ss_pred             -CCCcEEEEEeCCchhhhc-----cCCcceEEecCCChHHHHHHHhhhhcCCC-CCchhHhhhcc
Q 039455          157 -GFGSRIIITTRDEHVLKG-----HGVTNIYKVRGLDYVEALQLFHLKVSKGK-QPTDDRVELSK  214 (216)
Q Consensus       157 -~~~~~il~tsr~~~~~~~-----~~~~~~~~l~~l~~~~~~~ll~~~~~~~~-~~~~~~~~l~~  214 (216)
                       ..+..+|.||+.+...+.     -..+..+.+++.+.++..++|+.+..... .++.++.++++
T Consensus       190 ~~~~v~vI~aTn~~~~ld~al~r~gRfd~~i~i~~Pd~~~R~~il~~~l~~~~~~~~~~l~~la~  254 (495)
T TIGR01241       190 TNTGVIVIAATNRPDVLDPALLRPGRFDRQVVVDLPDIKGREEILKVHAKNKKLAPDVDLKAVAR  254 (495)
T ss_pred             CCCCeEEEEecCChhhcCHHHhcCCcceEEEEcCCCCHHHHHHHHHHHHhcCCCCcchhHHHHHH
Confidence             234456667765542221     12467899999999999999988764433 23334555543

HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.

>TIGR03689 pup_AAA proteasome ATPase

Probab=98.95  E-value=4.6e-08  Score=82.51  Aligned_cols=162  Identities=20%  Similarity=0.239  Sum_probs=90.5

Q ss_pred             cccccccchhHHHHHHHHHhc-----------CCCCeeEEEEEecCCCcHHHHHHHHHHHhcCCCC-----ceEeecccc
Q 039455           24 AVDGLVGIASRMEKMNGYLEA-----------GLDDVRFIGICGMGGIGKTTLAKVLYNTLKDQFE-----ASSFLANVR   87 (216)
Q Consensus        24 ~~~~~vgR~~~~~~l~~~l~~-----------~~~~~~~i~I~G~~GiGKTtL~~~~~~~~~~~~~-----~~~~~~~~~   87 (216)
                      ....+.|.+..++++...+..           +-...+.++++||+|+|||++++.+++.+...+.     ...|+. ..
T Consensus       180 ~~~dIgGl~~~i~~i~~~v~lp~~~~~l~~~~gl~~p~GILLyGPPGTGKT~LAKAlA~eL~~~i~~~~~~~~~fl~-v~  258 (512)
T TIGR03689       180 TYADIGGLDSQIEQIRDAVELPFLHPELYREYDLKPPKGVLLYGPPGCGKTLIAKAVANSLAQRIGAETGDKSYFLN-IK  258 (512)
T ss_pred             CHHHcCChHHHHHHHHHHHHHHhhCHHHHHhccCCCCcceEEECCCCCcHHHHHHHHHHhhccccccccCCceeEEe-cc
Confidence            345678899999998886531           1123467999999999999999999998754421     122222 11


Q ss_pred             ccccccCchHHHHHHHHHHHhhccccccchhhhHHHHHH-HhCCceEEEEEeCCCCHH---------H-----HHHhhcC
Q 039455           88 EVSVTRGLVPLQEQLLSEVLMERNLIIWDVHKGINLIRW-RLCRKRVLVVLDDVDQLE---------Q-----LQALAGN  152 (216)
Q Consensus        88 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~-~l~~~~~llvlDd~~~~~---------~-----~~~l~~~  152 (216)
                      ..           .++....+..   ............. ...+++++|+|||++..-         +     +..++..
T Consensus       259 ~~-----------eLl~kyvGet---e~~ir~iF~~Ar~~a~~g~p~IIfIDEiD~L~~~R~~~~s~d~e~~il~~LL~~  324 (512)
T TIGR03689       259 GP-----------ELLNKYVGET---ERQIRLIFQRAREKASDGRPVIVFFDEMDSIFRTRGSGVSSDVETTVVPQLLSE  324 (512)
T ss_pred             ch-----------hhcccccchH---HHHHHHHHHHHHHHhhcCCCceEEEehhhhhhcccCCCccchHHHHHHHHHHHH
Confidence            10           0110000000   0000011111111 123468999999997431         1     2233332


Q ss_pred             CCCC--CCCcEEEEEeCCchhhhc--c---CCcceEEecCCChHHHHHHHhhhhc
Q 039455          153 HDWF--GFGSRIIITTRDEHVLKG--H---GVTNIYKVRGLDYVEALQLFHLKVS  200 (216)
Q Consensus       153 ~~~~--~~~~~il~tsr~~~~~~~--~---~~~~~~~l~~l~~~~~~~ll~~~~~  200 (216)
                      +...  ..+..+|.||..++....  +   ..+..+++++.+.++..++|+.+..
T Consensus       325 LDgl~~~~~ViVI~ATN~~d~LDpALlRpGRfD~~I~~~~Pd~e~r~~Il~~~l~  379 (512)
T TIGR03689       325 LDGVESLDNVIVIGASNREDMIDPAILRPGRLDVKIRIERPDAEAAADIFSKYLT  379 (512)
T ss_pred             hcccccCCceEEEeccCChhhCCHhhcCccccceEEEeCCCCHHHHHHHHHHHhh
Confidence            2211  134455666665543221  1   2466799999999999999998763

In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.

>PRK14970 DNA polymerase III subunits gamma and tau; Provisional

Probab=98.95  E-value=1.5e-08  Score=83.05  Aligned_cols=170  Identities=16%  Similarity=0.203  Sum_probs=96.0

Q ss_pred             CCcccccccchhHHHHHHHHHhcCCCCeeEEEEEecCCCcHHHHHHHHHHHhcCCC--------CceEeecccccccccc
Q 039455           22 PSAVDGLVGIASRMEKMNGYLEAGLDDVRFIGICGMGGIGKTTLAKVLYNTLKDQF--------EASSFLANVREVSVTR   93 (216)
Q Consensus        22 ~~~~~~~vgR~~~~~~l~~~l~~~~~~~~~i~I~G~~GiGKTtL~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~   93 (216)
                      |..-++++|.+...+.+.+.+..+ .-.+.+.++||+|+|||++++.++..+....        .....-  ... . ..
T Consensus        13 P~~~~~iig~~~~~~~l~~~i~~~-~~~~~~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~~~~~~~~~--l~~-~-~~   87 (367)
T PRK14970         13 PQTFDDVVGQSHITNTLLNAIENN-HLAQALLFCGPRGVGKTTCARILARKINQPGYDDPNEDFSFNIFE--LDA-A-SN   87 (367)
T ss_pred             CCcHHhcCCcHHHHHHHHHHHHcC-CCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCcceEE--ecc-c-cC
Confidence            445667899999999999988754 3346899999999999999999988764321        100000  000 0 00


Q ss_pred             CchHHHHHHHHHHHhhccccccchhhhHHHHHHHhCCceEEEEEeCCCCH--HHHHHhhcCCCCCCCCcEEEEEeCCc-h
Q 039455           94 GLVPLQEQLLSEVLMERNLIIWDVHKGINLIRWRLCRKRVLVVLDDVDQL--EQLQALAGNHDWFGFGSRIIITTRDE-H  170 (216)
Q Consensus        94 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~llvlDd~~~~--~~~~~l~~~~~~~~~~~~il~tsr~~-~  170 (216)
                      ........++..+.                 ...+.+++-++++|+++..  ..+..++..+......+.+|+++... .
T Consensus        88 ~~~~~i~~l~~~~~-----------------~~p~~~~~kiviIDE~~~l~~~~~~~ll~~le~~~~~~~~Il~~~~~~k  150 (367)
T PRK14970         88 NSVDDIRNLIDQVR-----------------IPPQTGKYKIYIIDEVHMLSSAAFNAFLKTLEEPPAHAIFILATTEKHK  150 (367)
T ss_pred             CCHHHHHHHHHHHh-----------------hccccCCcEEEEEeChhhcCHHHHHHHHHHHhCCCCceEEEEEeCCccc
Confidence            00011111111100                 0012234568999999754  33555544333223344555555432 2


Q ss_pred             hhhcc-CCcceEEecCCChHHHHHHHhhhhcCCC--CCchhHhhhc
Q 039455          171 VLKGH-GVTNIYKVRGLDYVEALQLFHLKVSKGK--QPTDDRVELS  213 (216)
Q Consensus       171 ~~~~~-~~~~~~~l~~l~~~~~~~ll~~~~~~~~--~~~~~~~~l~  213 (216)
                      +...+ .....+++++++.++....+...+...+  .+++.++.|+
T Consensus       151 l~~~l~sr~~~v~~~~~~~~~l~~~l~~~~~~~g~~i~~~al~~l~  196 (367)
T PRK14970        151 IIPTILSRCQIFDFKRITIKDIKEHLAGIAVKEGIKFEDDALHIIA  196 (367)
T ss_pred             CCHHHHhcceeEecCCccHHHHHHHHHHHHHHcCCCCCHHHHHHHH
Confidence            22221 2345799999999999999987664444  3445555444

>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]

Probab=98.95  E-value=5.1e-09  Score=88.81  Aligned_cols=133  Identities=23%  Similarity=0.250  Sum_probs=80.9

Q ss_pred             CCeeEEEEEecCCCcHHHHHHHHHHHhcCCCCceEeecc-------cc--ccccccCchHHH--------HHHHHHHHhh
Q 039455           47 DDVRFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLAN-------VR--EVSVTRGLVPLQ--------EQLLSEVLME  109 (216)
Q Consensus        47 ~~~~~i~I~G~~GiGKTtL~~~~~~~~~~~~~~~~~~~~-------~~--~~~~~~~~~~~~--------~~l~~~~~~~  109 (216)
                      ..+..|+|+||+|+|||||++.+++........+.|-..       ..  .......+.+..        ..-++.+...
T Consensus       346 ~~g~riaiiG~NG~GKSTLlk~l~g~~~~~~G~v~~g~~v~igyf~Q~~~~l~~~~t~~d~l~~~~~~~~e~~~r~~L~~  425 (530)
T COG0488         346 DRGDRIAIVGPNGAGKSTLLKLLAGELGPLSGTVKVGETVKIGYFDQHRDELDPDKTVLEELSEGFPDGDEQEVRAYLGR  425 (530)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhhhcccCCceEEeCCceEEEEEEehhhhcCccCcHHHHHHhhCccccHHHHHHHHHH
Confidence            346799999999999999999997765443222222211       00  000011111111        1111111111


Q ss_pred             ccc----------cccchhhhHHHHHHHhCCceEEEEEeCC------CCHHHHHHhhcCCCCCCCCcEEEEEeCCchhhh
Q 039455          110 RNL----------IIWDVHKGINLIRWRLCRKRVLVVLDDV------DQLEQLQALAGNHDWFGFGSRIIITTRDEHVLK  173 (216)
Q Consensus       110 ~~~----------~~~~~~~~~~~l~~~l~~~~~llvlDd~------~~~~~~~~l~~~~~~~~~~~~il~tsr~~~~~~  173 (216)
                      ..+          ..+..+...-.+...+..++.+||||+.      ++.+.+...+..|.     ..+|+.||+.++++
T Consensus       426 f~F~~~~~~~~v~~LSGGEk~Rl~La~ll~~~pNvLiLDEPTNhLDi~s~~aLe~aL~~f~-----Gtvl~VSHDr~Fl~  500 (530)
T COG0488         426 FGFTGEDQEKPVGVLSGGEKARLLLAKLLLQPPNLLLLDEPTNHLDIESLEALEEALLDFE-----GTVLLVSHDRYFLD  500 (530)
T ss_pred             cCCChHHHhCchhhcCHhHHHHHHHHHHhccCCCEEEEcCCCccCCHHHHHHHHHHHHhCC-----CeEEEEeCCHHHHH
Confidence            111          1223344555688888899999999955      46677888887775     67999999999999


Q ss_pred             ccCCcceEEecC
Q 039455          174 GHGVTNIYKVRG  185 (216)
Q Consensus       174 ~~~~~~~~~l~~  185 (216)
                      .. +.+.+.+++
T Consensus       501 ~v-a~~i~~~~~  511 (530)
T COG0488         501 RV-ATRIWLVED  511 (530)
T ss_pred             hh-cceEEEEcC
Confidence            87 467777765

>PRK14959 DNA polymerase III subunits gamma and tau; Provisional

Probab=98.94  E-value=2.5e-08  Score=85.63  Aligned_cols=180  Identities=12%  Similarity=0.089  Sum_probs=98.3

Q ss_pred             CCcccccccchhHHHHHHHHHhcCCCCeeEEEEEecCCCcHHHHHHHHHHHhcCCC-C-ceEeeccccccccccCchHHH
Q 039455           22 PSAVDGLVGIASRMEKMNGYLEAGLDDVRFIGICGMGGIGKTTLAKVLYNTLKDQF-E-ASSFLANVREVSVTRGLVPLQ   99 (216)
Q Consensus        22 ~~~~~~~vgR~~~~~~l~~~l~~~~~~~~~i~I~G~~GiGKTtL~~~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~   99 (216)
                      |..-.+++|.+...+.|.+.+..+ .-...+.++|+.|+||||+|+.++..+.... . ...+           +....+
T Consensus        12 P~sf~dIiGQe~v~~~L~~ai~~~-ri~ha~Lf~GPpG~GKTtiArilAk~L~C~~~~~~~pC-----------g~C~sC   79 (624)
T PRK14959         12 PQTFAEVAGQETVKAILSRAAQEN-RVAPAYLFSGTRGVGKTTIARIFAKALNCETAPTGEPC-----------NTCEQC   79 (624)
T ss_pred             CCCHHHhcCCHHHHHHHHHHHHcC-CCCceEEEECCCCCCHHHHHHHHHHhccccCCCCCCCC-----------cccHHH
Confidence            344567899999988899888753 2347888999999999999999998664211 0 0000           000011


Q ss_pred             HHHHHHHHh-------hccccccchhhhHHHHH-HHhCCceEEEEEeCCCCH--HHHHHhhcCCCCCCCCcEEEEEeCCc
Q 039455          100 EQLLSEVLM-------ERNLIIWDVHKGINLIR-WRLCRKRVLVVLDDVDQL--EQLQALAGNHDWFGFGSRIIITTRDE  169 (216)
Q Consensus       100 ~~l~~~~~~-------~~~~~~~~~~~~~~~l~-~~l~~~~~llvlDd~~~~--~~~~~l~~~~~~~~~~~~il~tsr~~  169 (216)
                      ..+......       .......+...+.+.+. ....++..++|||+++..  +....|+..+..-.....+|++|.+.
T Consensus        80 ~~i~~g~hpDv~eId~a~~~~Id~iR~L~~~~~~~p~~g~~kVIIIDEad~Lt~~a~naLLk~LEEP~~~~ifILaTt~~  159 (624)
T PRK14959         80 RKVTQGMHVDVVEIDGASNRGIDDAKRLKEAIGYAPMEGRYKVFIIDEAHMLTREAFNALLKTLEEPPARVTFVLATTEP  159 (624)
T ss_pred             HHHhcCCCCceEEEecccccCHHHHHHHHHHHHhhhhcCCceEEEEEChHhCCHHHHHHHHHHhhccCCCEEEEEecCCh
Confidence            111000000       00000000111111111 112345679999999865  44555665554323455566666553


Q ss_pred             -hhhhcc-CCcceEEecCCChHHHHHHHhhhhcCCC--CCchhHhhhc
Q 039455          170 -HVLKGH-GVTNIYKVRGLDYVEALQLFHLKVSKGK--QPTDDRVELS  213 (216)
Q Consensus       170 -~~~~~~-~~~~~~~l~~l~~~~~~~ll~~~~~~~~--~~~~~~~~l~  213 (216)
                       .+...+ .....+++++++.++....|...+...+  .+++.++.|+
T Consensus       160 ~kll~TI~SRcq~i~F~pLs~~eL~~~L~~il~~egi~id~eal~lIA  207 (624)
T PRK14959        160 HKFPVTIVSRCQHFTFTRLSEAGLEAHLTKVLGREGVDYDPAAVRLIA  207 (624)
T ss_pred             hhhhHHHHhhhhccccCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHH
Confidence             333222 2236789999999999999987654433  3344444443

>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB

Probab=98.93  E-value=2.3e-08  Score=90.12  Aligned_cols=154  Identities=10%  Similarity=0.055  Sum_probs=89.1

Q ss_pred             cccccccchhHHHHHHHHHhcCCCCeeEEEEEecCCCcHHHHHHHHHHHhcCCC------CceEeeccccccccccCchH
Q 039455           24 AVDGLVGIASRMEKMNGYLEAGLDDVRFIGICGMGGIGKTTLAKVLYNTLKDQF------EASSFLANVREVSVTRGLVP   97 (216)
Q Consensus        24 ~~~~~vgR~~~~~~l~~~l~~~~~~~~~i~I~G~~GiGKTtL~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~   97 (216)
                      ..++++||+++++++...|....  ...++++||+|+|||++++.++.++.+..      ...+|...+.          
T Consensus       171 ~~~~~igr~~ei~~~~~~l~r~~--~~n~lL~G~pGvGKT~l~~~la~~i~~~~~p~~l~~~~~~~l~~~----------  238 (852)
T TIGR03346       171 KLDPVIGRDEEIRRTIQVLSRRT--KNNPVLIGEPGVGKTAIVEGLAQRIVNGDVPESLKNKRLLALDMG----------  238 (852)
T ss_pred             CCCcCCCcHHHHHHHHHHHhcCC--CCceEEEcCCCCCHHHHHHHHHHHHhccCCchhhcCCeEEEeeHH----------
Confidence            34679999999999999887542  35667899999999999999999875431      1122221111          


Q ss_pred             HHHHHHHHHHhhccccccchhhhHHH-HHHHhC-CceEEEEEeCCCCHH---------HHHHhhcCCCCCCCCcEEEEEe
Q 039455           98 LQEQLLSEVLMERNLIIWDVHKGINL-IRWRLC-RKRVLVVLDDVDQLE---------QLQALAGNHDWFGFGSRIIITT  166 (216)
Q Consensus        98 ~~~~l~~~~~~~~~~~~~~~~~~~~~-l~~~l~-~~~~llvlDd~~~~~---------~~~~l~~~~~~~~~~~~il~ts  166 (216)
                         .++.    .... ..++...... +..... .++.+|+||+++.+-         +...++..... .....+|.+|
T Consensus       239 ---~l~a----~~~~-~g~~e~~l~~~l~~~~~~~~~~ILfIDEih~l~~~g~~~~~~d~~~~Lk~~l~-~g~i~~IgaT  309 (852)
T TIGR03346       239 ---ALIA----GAKY-RGEFEERLKAVLNEVTKSEGQIILFIDELHTLVGAGKAEGAMDAGNMLKPALA-RGELHCIGAT  309 (852)
T ss_pred             ---HHhh----cchh-hhhHHHHHHHHHHHHHhcCCCeEEEeccHHHhhcCCCCcchhHHHHHhchhhh-cCceEEEEeC
Confidence               1110    0000 0112222222 222222 368999999996441         23333332221 2234566666


Q ss_pred             CCchhhhc-------cCCcceEEecCCChHHHHHHHhhh
Q 039455          167 RDEHVLKG-------HGVTNIYKVRGLDYVEALQLFHLK  198 (216)
Q Consensus       167 r~~~~~~~-------~~~~~~~~l~~l~~~~~~~ll~~~  198 (216)
                      ...++...       ...+..+.++..+.++..++++..
T Consensus       310 t~~e~r~~~~~d~al~rRf~~i~v~~p~~~~~~~iL~~~  348 (852)
T TIGR03346       310 TLDEYRKYIEKDAALERRFQPVFVDEPTVEDTISILRGL  348 (852)
T ss_pred             cHHHHHHHhhcCHHHHhcCCEEEeCCCCHHHHHHHHHHH
Confidence            55543211       124577899999999999998754

Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.

>PHA02544 44 clamp loader, small subunit; Provisional

Probab=98.93  E-value=2.1e-08  Score=80.57  Aligned_cols=149  Identities=17%  Similarity=0.234  Sum_probs=85.0

Q ss_pred             CCcccccccchhHHHHHHHHHhcCCCCeeEEEEEecCCCcHHHHHHHHHHHhcCCCCceEeeccccccccccCchHHHHH
Q 039455           22 PSAVDGLVGIASRMEKMNGYLEAGLDDVRFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLANVREVSVTRGLVPLQEQ  101 (216)
Q Consensus        22 ~~~~~~~vgR~~~~~~l~~~l~~~~~~~~~i~I~G~~GiGKTtL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  101 (216)
                      |....+++|.+...+.+..++..+ .-...+.++|++|+|||++++.+++.....   ...+. ...   . . ......
T Consensus        17 P~~~~~~~~~~~~~~~l~~~~~~~-~~~~~lll~G~~G~GKT~la~~l~~~~~~~---~~~i~-~~~---~-~-~~~i~~   86 (316)
T PHA02544         17 PSTIDECILPAADKETFKSIVKKG-RIPNMLLHSPSPGTGKTTVAKALCNEVGAE---VLFVN-GSD---C-R-IDFVRN   86 (316)
T ss_pred             CCcHHHhcCcHHHHHHHHHHHhcC-CCCeEEEeeCcCCCCHHHHHHHHHHHhCcc---ceEec-cCc---c-c-HHHHHH
Confidence            455678999999999999998753 334677779999999999999998876322   22222 111   0 1 111111


Q ss_pred             HHHHHHhhccccccchhhhHHHHHHHhCCceEEEEEeCCCCH--HHHHHhhcC-CCCCCCCcEEEEEeCCchh-hhcc-C
Q 039455          102 LLSEVLMERNLIIWDVHKGINLIRWRLCRKRVLVVLDDVDQL--EQLQALAGN-HDWFGFGSRIIITTRDEHV-LKGH-G  176 (216)
Q Consensus       102 l~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~llvlDd~~~~--~~~~~l~~~-~~~~~~~~~il~tsr~~~~-~~~~-~  176 (216)
                      .+......               . .+...+-++||||++..  .+....+.. +.....++.+|+||..... ...+ .
T Consensus        87 ~l~~~~~~---------------~-~~~~~~~vliiDe~d~l~~~~~~~~L~~~le~~~~~~~~Ilt~n~~~~l~~~l~s  150 (316)
T PHA02544         87 RLTRFAST---------------V-SLTGGGKVIIIDEFDRLGLADAQRHLRSFMEAYSKNCSFIITANNKNGIIEPLRS  150 (316)
T ss_pred             HHHHHHHh---------------h-cccCCCeEEEEECcccccCHHHHHHHHHHHHhcCCCceEEEEcCChhhchHHHHh
Confidence            11110000               0 01134568999999755  222222221 2222456788888875431 1111 2


Q ss_pred             CcceEEecCCChHHHHHHHh
Q 039455          177 VTNIYKVRGLDYVEALQLFH  196 (216)
Q Consensus       177 ~~~~~~l~~l~~~~~~~ll~  196 (216)
                      ....+.+++.+.++..+++.
T Consensus       151 R~~~i~~~~p~~~~~~~il~  170 (316)
T PHA02544        151 RCRVIDFGVPTKEEQIEMMK  170 (316)
T ss_pred             hceEEEeCCCCHHHHHHHHH
Confidence            23578888888887776654

>CHL00176 ftsH cell division protein; Validated

Probab=98.93  E-value=1.7e-08  Score=87.54  Aligned_cols=166  Identities=17%  Similarity=0.185  Sum_probs=97.0

Q ss_pred             ccccccchhHHHHHHHHHh---cC-------CCCeeEEEEEecCCCcHHHHHHHHHHHhcCCCCceEeeccccccccccC
Q 039455           25 VDGLVGIASRMEKMNGYLE---AG-------LDDVRFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLANVREVSVTRG   94 (216)
Q Consensus        25 ~~~~vgR~~~~~~l~~~l~---~~-------~~~~~~i~I~G~~GiGKTtL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   94 (216)
                      -+++.|.++..+++...+.   ..       ......++++||+|+|||+||+.+++....     .|+.....      
T Consensus       182 f~dv~G~~~~k~~l~eiv~~lk~~~~~~~~g~~~p~gVLL~GPpGTGKT~LAralA~e~~~-----p~i~is~s------  250 (638)
T CHL00176        182 FRDIAGIEEAKEEFEEVVSFLKKPERFTAVGAKIPKGVLLVGPPGTGKTLLAKAIAGEAEV-----PFFSISGS------  250 (638)
T ss_pred             HHhccChHHHHHHHHHHHHHHhCHHHHhhccCCCCceEEEECCCCCCHHHHHHHHHHHhCC-----CeeeccHH------
Confidence            4568899888887766543   11       112457999999999999999999986532     12210000      


Q ss_pred             chHHHHHHHHHHHhhccccccchhhhHHHHHHHhCCceEEEEEeCCCCHH----------------HHHHhhcCCCC--C
Q 039455           95 LVPLQEQLLSEVLMERNLIIWDVHKGINLIRWRLCRKRVLVVLDDVDQLE----------------QLQALAGNHDW--F  156 (216)
Q Consensus        95 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~llvlDd~~~~~----------------~~~~l~~~~~~--~  156 (216)
                            .+......      .........+.......+++|+|||++...                .+..++..+..  .
T Consensus       251 ------~f~~~~~g------~~~~~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~~~dg~~~  318 (638)
T CHL00176        251 ------EFVEMFVG------VGAARVRDLFKKAKENSPCIVFIDEIDAVGRQRGAGIGGGNDEREQTLNQLLTEMDGFKG  318 (638)
T ss_pred             ------HHHHHhhh------hhHHHHHHHHHHHhcCCCcEEEEecchhhhhcccCCCCCCcHHHHHHHHHHHhhhccccC
Confidence                  01100000      011223344555566789999999996541                13334333221  1


Q ss_pred             CCCcEEEEEeCCchhhhc-----cCCcceEEecCCChHHHHHHHhhhhcCCC-CCchhHhhhc
Q 039455          157 GFGSRIIITTRDEHVLKG-----HGVTNIYKVRGLDYVEALQLFHLKVSKGK-QPTDDRVELS  213 (216)
Q Consensus       157 ~~~~~il~tsr~~~~~~~-----~~~~~~~~l~~l~~~~~~~ll~~~~~~~~-~~~~~~~~l~  213 (216)
                      ..+..+|.||+..+....     -..+..+.+++.+.++..++|+.++.... .++..+..++
T Consensus       319 ~~~ViVIaaTN~~~~LD~ALlRpGRFd~~I~v~lPd~~~R~~IL~~~l~~~~~~~d~~l~~lA  381 (638)
T CHL00176        319 NKGVIVIAATNRVDILDAALLRPGRFDRQITVSLPDREGRLDILKVHARNKKLSPDVSLELIA  381 (638)
T ss_pred             CCCeeEEEecCchHhhhhhhhccccCceEEEECCCCHHHHHHHHHHHHhhcccchhHHHHHHH
Confidence            234566777766543321     12457899999999999999998775433 2333444444

>PRK14955 DNA polymerase III subunits gamma and tau; Provisional

Probab=98.92  E-value=2.3e-08  Score=82.70  Aligned_cols=174  Identities=14%  Similarity=0.119  Sum_probs=93.8

Q ss_pred             CCcccccccchhHHHHHHHHHhcCCCCeeEEEEEecCCCcHHHHHHHHHHHhcCC--CCceEeeccccccccccCchHHH
Q 039455           22 PSAVDGLVGIASRMEKMNGYLEAGLDDVRFIGICGMGGIGKTTLAKVLYNTLKDQ--FEASSFLANVREVSVTRGLVPLQ   99 (216)
Q Consensus        22 ~~~~~~~vgR~~~~~~l~~~l~~~~~~~~~i~I~G~~GiGKTtL~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~   99 (216)
                      |..-.+++|.+...+.|.+++..+ .-...+.++||+|+||||+|..++..+...  +....|.....   .+-.-...+
T Consensus        12 P~~~~eiiGq~~~~~~L~~~~~~~-~~~ha~lf~Gp~G~GKtt~A~~~a~~l~c~~~~~~~~~~~~~~---~~c~~c~~c   87 (397)
T PRK14955         12 PKKFADITAQEHITRTIQNSLRMG-RVGHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDADYLQEVT---EPCGECESC   87 (397)
T ss_pred             CCcHhhccChHHHHHHHHHHHHhC-CcceeEEEECCCCCCHHHHHHHHHHHhcCCCCcCcccccccCC---CCCCCCHHH
Confidence            445667999999999999988754 234568999999999999999999876432  11111110000   000000111


Q ss_pred             HHHHHHHHh----hccccccchhhhHHHHHHH-----hCCceEEEEEeCCCCH--HHHHHhhcCCCCCCCCcEEEEEeCC
Q 039455          100 EQLLSEVLM----ERNLIIWDVHKGINLIRWR-----LCRKRVLVVLDDVDQL--EQLQALAGNHDWFGFGSRIIITTRD  168 (216)
Q Consensus       100 ~~l~~~~~~----~~~~~~~~~~~~~~~l~~~-----l~~~~~llvlDd~~~~--~~~~~l~~~~~~~~~~~~il~tsr~  168 (216)
                      ..+......    .........+.... +...     +.+++-++|+||++..  +.+..++..+..-...+.+|+++..
T Consensus        88 ~~~~~~~~~n~~~~~~~~~~~id~Ir~-l~~~~~~~p~~~~~kvvIIdea~~l~~~~~~~LLk~LEep~~~t~~Il~t~~  166 (397)
T PRK14955         88 RDFDAGTSLNISEFDAASNNSVDDIRL-LRENVRYGPQKGRYRVYIIDEVHMLSIAAFNAFLKTLEEPPPHAIFIFATTE  166 (397)
T ss_pred             HHHhcCCCCCeEeecccccCCHHHHHH-HHHHHhhchhcCCeEEEEEeChhhCCHHHHHHHHHHHhcCCCCeEEEEEeCC
Confidence            111100000    00000001111111 1111     2345668999999755  3455665555433445566665543


Q ss_pred             -chhhhcc-CCcceEEecCCChHHHHHHHhhhhc
Q 039455          169 -EHVLKGH-GVTNIYKVRGLDYVEALQLFHLKVS  200 (216)
Q Consensus       169 -~~~~~~~-~~~~~~~l~~l~~~~~~~ll~~~~~  200 (216)
                       ..+...+ .....+++++++.++..+.+...+-
T Consensus       167 ~~kl~~tl~sR~~~v~f~~l~~~ei~~~l~~~~~  200 (397)
T PRK14955        167 LHKIPATIASRCQRFNFKRIPLEEIQQQLQGICE  200 (397)
T ss_pred             hHHhHHHHHHHHHHhhcCCCCHHHHHHHHHHHHH
Confidence             2333222 1236799999999999988887653

>COG3899 Predicted ATPase [General function prediction only]

Probab=98.92  E-value=2.4e-08  Score=89.57  Aligned_cols=50  Identities=18%  Similarity=0.304  Sum_probs=43.1

Q ss_pred             ccccchhHHHHHHHHHhcC-CCCeeEEEEEecCCCcHHHHHHHHHHHhcCC
Q 039455           27 GLVGIASRMEKMNGYLEAG-LDDVRFIGICGMGGIGKTTLAKVLYNTLKDQ   76 (216)
Q Consensus        27 ~~vgR~~~~~~l~~~l~~~-~~~~~~i~I~G~~GiGKTtL~~~~~~~~~~~   76 (216)
                      .++||+.+++.|...+... ...+.++.|.|.+|||||+|++++...+.+.
T Consensus         1 ~l~GRe~ev~~Ll~~f~~v~~g~~~~~lv~G~sGIGKsalv~ev~~~i~~~   51 (849)
T COG3899           1 PLYGRETELAQLLAAFDRVSKGRGEVVLVAGESGIGKSALVNEVHKPITQQ   51 (849)
T ss_pred             CCCchHhHHHHHHHHHHHHhCCCeEEEEEeecCCCcHHHHHHHHHHHHhcc
Confidence            3799999999999987743 4567899999999999999999999877655

>CHL00181 cbbX CbbX; Provisional

Probab=98.91  E-value=1e-07  Score=75.38  Aligned_cols=152  Identities=16%  Similarity=0.191  Sum_probs=84.6

Q ss_pred             ccccchhHHHHHHHHHh--------c--C---CCCeeEEEEEecCCCcHHHHHHHHHHHhcCCC--CceEeecccccccc
Q 039455           27 GLVGIASRMEKMNGYLE--------A--G---LDDVRFIGICGMGGIGKTTLAKVLYNTLKDQF--EASSFLANVREVSV   91 (216)
Q Consensus        27 ~~vgR~~~~~~l~~~l~--------~--~---~~~~~~i~I~G~~GiGKTtL~~~~~~~~~~~~--~~~~~~~~~~~~~~   91 (216)
                      .++|-++..+++.++..        .  +   ...+..++++|++|+|||++|+.++..+....  +...|+...     
T Consensus        24 ~l~Gl~~vK~~i~e~~~~~~~~~~~~~~g~~~~~~~~~ill~G~pGtGKT~lAr~la~~~~~~g~~~~~~~~~v~-----   98 (287)
T CHL00181         24 ELVGLAPVKTRIREIAALLLIDRLRKNLGLTSSNPGLHMSFTGSPGTGKTTVALKMADILYKLGYIKKGHLLTVT-----   98 (287)
T ss_pred             hcCCcHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCceEEEECCCCCCHHHHHHHHHHHHHHcCCCCCCceEEec-----
Confidence            47888777776654421        0  1   12355799999999999999999998654221  111122100     


Q ss_pred             ccCchHHHHHHHHHHHhhccccccchhhhHHHHHHHhCCceEEEEEeCCCCH-----------HHHHHhhcCCCCCCCCc
Q 039455           92 TRGLVPLQEQLLSEVLMERNLIIWDVHKGINLIRWRLCRKRVLVVLDDVDQL-----------EQLQALAGNHDWFGFGS  160 (216)
Q Consensus        92 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~llvlDd~~~~-----------~~~~~l~~~~~~~~~~~  160 (216)
                             ...+...+.+..      .......+...   ..-+|+||+++.+           +....+...+.....+.
T Consensus        99 -------~~~l~~~~~g~~------~~~~~~~l~~a---~ggVLfIDE~~~l~~~~~~~~~~~e~~~~L~~~me~~~~~~  162 (287)
T CHL00181         99 -------RDDLVGQYIGHT------APKTKEVLKKA---MGGVLFIDEAYYLYKPDNERDYGSEAIEILLQVMENQRDDL  162 (287)
T ss_pred             -------HHHHHHHHhccc------hHHHHHHHHHc---cCCEEEEEccchhccCCCccchHHHHHHHHHHHHhcCCCCE
Confidence                   111222211110      11111222221   2249999999753           22334444333333456


Q ss_pred             EEEEEeCCchh----------hhccCCcceEEecCCChHHHHHHHhhhhcC
Q 039455          161 RIIITTRDEHV----------LKGHGVTNIYKVRGLDYVEALQLFHLKVSK  201 (216)
Q Consensus       161 ~il~tsr~~~~----------~~~~~~~~~~~l~~l~~~~~~~ll~~~~~~  201 (216)
                      .||+++....+          .+.  ....+.+++++.++..+++...+-.
T Consensus       163 ~vI~ag~~~~~~~~~~~np~L~sR--~~~~i~F~~~t~~el~~I~~~~l~~  211 (287)
T CHL00181        163 VVIFAGYKDRMDKFYESNPGLSSR--IANHVDFPDYTPEELLQIAKIMLEE  211 (287)
T ss_pred             EEEEeCCcHHHHHHHhcCHHHHHh--CCceEEcCCcCHHHHHHHHHHHHHH
Confidence            67777654322          222  4678999999999999999887643

>PRK05563 DNA polymerase III subunits gamma and tau; Validated

Probab=98.90  E-value=7.8e-08  Score=82.70  Aligned_cols=182  Identities=13%  Similarity=0.132  Sum_probs=97.9

Q ss_pred             CCcccccccchhHHHHHHHHHhcCCCCeeEEEEEecCCCcHHHHHHHHHHHhcCCCCceEeeccccccccccCchHHHHH
Q 039455           22 PSAVDGLVGIASRMEKMNGYLEAGLDDVRFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLANVREVSVTRGLVPLQEQ  101 (216)
Q Consensus        22 ~~~~~~~vgR~~~~~~l~~~l~~~~~~~~~i~I~G~~GiGKTtL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  101 (216)
                      |..-.+++|.+...+.|..++..+ .-...+.++||.|+|||++|+.++..+...-+...- . +       +....+..
T Consensus        12 P~~f~~viGq~~v~~~L~~~i~~~-~~~hayLf~Gp~GtGKTt~Ak~lAkal~c~~~~~~~-p-C-------~~C~~C~~   81 (559)
T PRK05563         12 PQTFEDVVGQEHITKTLKNAIKQG-KISHAYLFSGPRGTGKTSAAKIFAKAVNCLNPPDGE-P-C-------NECEICKA   81 (559)
T ss_pred             CCcHHhccCcHHHHHHHHHHHHcC-CCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCC-C-C-------CccHHHHH
Confidence            445667999999999999988764 234678889999999999999999865422110000 0 0       00001111


Q ss_pred             HHHHHHh----hccccccchhh---hHHHHHH-HhCCceEEEEEeCCCCH--HHHHHhhcCCCCCCCCcEEEEEeCCc-h
Q 039455          102 LLSEVLM----ERNLIIWDVHK---GINLIRW-RLCRKRVLVVLDDVDQL--EQLQALAGNHDWFGFGSRIIITTRDE-H  170 (216)
Q Consensus       102 l~~~~~~----~~~~~~~~~~~---~~~~l~~-~l~~~~~llvlDd~~~~--~~~~~l~~~~~~~~~~~~il~tsr~~-~  170 (216)
                      +......    .........+.   ....+.. ...++.-++|||+++.+  ..+..++..+..-.....+|++|... .
T Consensus        82 i~~g~~~dv~eidaas~~~vd~ir~i~~~v~~~p~~~~~kViIIDE~~~Lt~~a~naLLKtLEepp~~~ifIlatt~~~k  161 (559)
T PRK05563         82 ITNGSLMDVIEIDAASNNGVDEIRDIRDKVKYAPSEAKYKVYIIDEVHMLSTGAFNALLKTLEEPPAHVIFILATTEPHK  161 (559)
T ss_pred             HhcCCCCCeEEeeccccCCHHHHHHHHHHHhhCcccCCeEEEEEECcccCCHHHHHHHHHHhcCCCCCeEEEEEeCChhh
Confidence            1000000    00000001111   1111110 12345679999999865  45666665554333444555555433 2


Q ss_pred             hhhcc-CCcceEEecCCChHHHHHHHhhhhcCCC--CCchhHhhhc
Q 039455          171 VLKGH-GVTNIYKVRGLDYVEALQLFHLKVSKGK--QPTDDRVELS  213 (216)
Q Consensus       171 ~~~~~-~~~~~~~l~~l~~~~~~~ll~~~~~~~~--~~~~~~~~l~  213 (216)
                      +...+ .....+++.+++.++....+...+-..+  .+++.++.|+
T Consensus       162 i~~tI~SRc~~~~f~~~~~~ei~~~L~~i~~~egi~i~~~al~~ia  207 (559)
T PRK05563        162 IPATILSRCQRFDFKRISVEDIVERLKYILDKEGIEYEDEALRLIA  207 (559)
T ss_pred             CcHHHHhHheEEecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHH
Confidence            32222 2346789999999999988887654333  2334444443

>PRK14953 DNA polymerase III subunits gamma and tau; Provisional

Probab=98.90  E-value=8.7e-08  Score=80.95  Aligned_cols=178  Identities=14%  Similarity=0.104  Sum_probs=96.7

Q ss_pred             CCcccccccchhHHHHHHHHHhcCCCCeeEEEEEecCCCcHHHHHHHHHHHhcCC-----CCceEeecccccccc--ccC
Q 039455           22 PSAVDGLVGIASRMEKMNGYLEAGLDDVRFIGICGMGGIGKTTLAKVLYNTLKDQ-----FEASSFLANVREVSV--TRG   94 (216)
Q Consensus        22 ~~~~~~~vgR~~~~~~l~~~l~~~~~~~~~i~I~G~~GiGKTtL~~~~~~~~~~~-----~~~~~~~~~~~~~~~--~~~   94 (216)
                      |..-..++|.+...+.|...+..+ .-...+.++||.|+||||+|+.++..+...     .++..... +.....  ..+
T Consensus        12 P~~f~diiGq~~i~~~L~~~i~~~-~i~hayLf~Gp~G~GKTtlAr~lAk~L~c~~~~~~~pc~~c~n-c~~i~~g~~~d   89 (486)
T PRK14953         12 PKFFKEVIGQEIVVRILKNAVKLQ-RVSHAYIFAGPRGTGKTTIARILAKVLNCLNPQEGEPCGKCEN-CVEIDKGSFPD   89 (486)
T ss_pred             CCcHHHccChHHHHHHHHHHHHcC-CCCeEEEEECCCCCCHHHHHHHHHHHhcCcCCCCCCCCCccHH-HHHHhcCCCCc
Confidence            334567899999999999988764 234567899999999999999999876421     01110000 000000  000


Q ss_pred             chHHHHHHHHHHHhhccccccchhhhHHHHHHH-----hCCceEEEEEeCCCCH--HHHHHhhcCCCCCCCCcEEEEEeC
Q 039455           95 LVPLQEQLLSEVLMERNLIIWDVHKGINLIRWR-----LCRKRVLVVLDDVDQL--EQLQALAGNHDWFGFGSRIIITTR  167 (216)
Q Consensus        95 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~-----l~~~~~llvlDd~~~~--~~~~~l~~~~~~~~~~~~il~tsr  167 (216)
                      +..+           ........+. ...+...     ..+++-++|+|+++..  +....++..+..-.....+|++|.
T Consensus        90 ~~ei-----------daas~~gvd~-ir~I~~~~~~~P~~~~~KVvIIDEad~Lt~~a~naLLk~LEepp~~~v~Il~tt  157 (486)
T PRK14953         90 LIEI-----------DAASNRGIDD-IRALRDAVSYTPIKGKYKVYIIDEAHMLTKEAFNALLKTLEEPPPRTIFILCTT  157 (486)
T ss_pred             EEEE-----------eCccCCCHHH-HHHHHHHHHhCcccCCeeEEEEEChhhcCHHHHHHHHHHHhcCCCCeEEEEEEC
Confidence            0000           0000000111 1111111     2345679999999865  345555554443334455555554


Q ss_pred             Cc-hhhhcc-CCcceEEecCCChHHHHHHHhhhhcCCC--CCchhHhhhc
Q 039455          168 DE-HVLKGH-GVTNIYKVRGLDYVEALQLFHLKVSKGK--QPTDDRVELS  213 (216)
Q Consensus       168 ~~-~~~~~~-~~~~~~~l~~l~~~~~~~ll~~~~~~~~--~~~~~~~~l~  213 (216)
                      +. .+...+ .....+++.+++.++....+.+.+-..+  .+++.+..|+
T Consensus       158 ~~~kl~~tI~SRc~~i~f~~ls~~el~~~L~~i~k~egi~id~~al~~La  207 (486)
T PRK14953        158 EYDKIPPTILSRCQRFIFSKPTKEQIKEYLKRICNEEKIEYEEKALDLLA  207 (486)
T ss_pred             CHHHHHHHHHHhceEEEcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHH
Confidence            43 222221 2346799999999999999987654333  2334444443

>CHL00195 ycf46 Ycf46; Provisional

Probab=98.90  E-value=5.2e-08  Score=82.11  Aligned_cols=154  Identities=16%  Similarity=0.171  Sum_probs=86.4

Q ss_pred             ccccccchhHHHHHHHHHh--------cCCCCeeEEEEEecCCCcHHHHHHHHHHHhcCCCCceEeeccccccccccCch
Q 039455           25 VDGLVGIASRMEKMNGYLE--------AGLDDVRFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLANVREVSVTRGLV   96 (216)
Q Consensus        25 ~~~~vgR~~~~~~l~~~l~--------~~~~~~~~i~I~G~~GiGKTtL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   96 (216)
                      ..++-|.+...+.+.....        .+-...+.+.++||+|+|||.+|+.+++.+.-.+  .. +. .+         
T Consensus       227 ~~dvgGl~~lK~~l~~~~~~~~~~~~~~gl~~pkGILL~GPpGTGKTllAkaiA~e~~~~~--~~-l~-~~---------  293 (489)
T CHL00195        227 ISDIGGLDNLKDWLKKRSTSFSKQASNYGLPTPRGLLLVGIQGTGKSLTAKAIANDWQLPL--LR-LD-VG---------  293 (489)
T ss_pred             HHHhcCHHHHHHHHHHHHHHhhHHHHhcCCCCCceEEEECCCCCcHHHHHHHHHHHhCCCE--EE-EE-hH---------
Confidence            3567787776666654211        1123457899999999999999999999764322  11 11 11         


Q ss_pred             HHHHHHHHHHHhhccccccchhhhHHHHHHHhCCceEEEEEeCCCCHH--------------HHHHhhcCCCCCCCCcEE
Q 039455           97 PLQEQLLSEVLMERNLIIWDVHKGINLIRWRLCRKRVLVVLDDVDQLE--------------QLQALAGNHDWFGFGSRI  162 (216)
Q Consensus        97 ~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~llvlDd~~~~~--------------~~~~l~~~~~~~~~~~~i  162 (216)
                          .+.....+      .+.......+...-...+++|+|||++..-              .+..++..+.....+..+
T Consensus       294 ----~l~~~~vG------ese~~l~~~f~~A~~~~P~IL~IDEID~~~~~~~~~~d~~~~~rvl~~lL~~l~~~~~~V~v  363 (489)
T CHL00195        294 ----KLFGGIVG------ESESRMRQMIRIAEALSPCILWIDEIDKAFSNSESKGDSGTTNRVLATFITWLSEKKSPVFV  363 (489)
T ss_pred             ----HhcccccC------hHHHHHHHHHHHHHhcCCcEEEehhhhhhhccccCCCCchHHHHHHHHHHHHHhcCCCceEE
Confidence                01000000      011112222333334578999999996431              112222222222334456


Q ss_pred             EEEeCCchhhhc-----cCCcceEEecCCChHHHHHHHhhhhcC
Q 039455          163 IITTRDEHVLKG-----HGVTNIYKVRGLDYVEALQLFHLKVSK  201 (216)
Q Consensus       163 l~tsr~~~~~~~-----~~~~~~~~l~~l~~~~~~~ll~~~~~~  201 (216)
                      |.||........     -..+..+.++..+.++..++|+.+...
T Consensus       364 IaTTN~~~~Ld~allR~GRFD~~i~v~lP~~~eR~~Il~~~l~~  407 (489)
T CHL00195        364 VATANNIDLLPLEILRKGRFDEIFFLDLPSLEEREKIFKIHLQK  407 (489)
T ss_pred             EEecCChhhCCHHHhCCCcCCeEEEeCCcCHHHHHHHHHHHHhh
Confidence            667765542221     135678999999999999999987644

>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]

Probab=98.89  E-value=4.1e-08  Score=77.84  Aligned_cols=166  Identities=17%  Similarity=0.251  Sum_probs=99.4

Q ss_pred             cccccchhHHHHHHHHHhcC-----------CCCeeEEEEEecCCCcHHHHHHHHHHHhcCCCCceEeeccccccccccC
Q 039455           26 DGLVGIASRMEKMNGYLEAG-----------LDDVRFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLANVREVSVTRG   94 (216)
Q Consensus        26 ~~~vgR~~~~~~l~~~l~~~-----------~~~~~~i~I~G~~GiGKTtL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   94 (216)
                      ...=|=++++++|...+..+           =..++-|.++||+|+|||-||++++++-...|     +...+       
T Consensus       151 ~dIGGL~~Qi~EirE~VELPL~~PElF~~~GI~PPKGVLLYGPPGTGKTLLAkAVA~~T~AtF-----Irvvg-------  218 (406)
T COG1222         151 EDIGGLDEQIQEIREVVELPLKNPELFEELGIDPPKGVLLYGPPGTGKTLLAKAVANQTDATF-----IRVVG-------  218 (406)
T ss_pred             hhccCHHHHHHHHHHHhcccccCHHHHHHcCCCCCCceEeeCCCCCcHHHHHHHHHhccCceE-----EEecc-------
Confidence            44557788888888876532           12367899999999999999999998754332     22111       


Q ss_pred             chHHHHHHHHHHHhhccccccchhhhHHHHHHHhCCceEEEEEeCCCCH------------HH----HHHhhcCCCCC--
Q 039455           95 LVPLQEQLLSEVLMERNLIIWDVHKGINLIRWRLCRKRVLVVLDDVDQL------------EQ----LQALAGNHDWF--  156 (216)
Q Consensus        95 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~llvlDd~~~~------------~~----~~~l~~~~~~~--  156 (216)
                           .++.+...+.      ......+.+.-+-++.+++|++|++|..            .+    +-+++..+.=+  
T Consensus       219 -----SElVqKYiGE------GaRlVRelF~lArekaPsIIFiDEIDAIg~kR~d~~t~gDrEVQRTmleLL~qlDGFD~  287 (406)
T COG1222         219 -----SELVQKYIGE------GARLVRELFELAREKAPSIIFIDEIDAIGAKRFDSGTSGDREVQRTMLELLNQLDGFDP  287 (406)
T ss_pred             -----HHHHHHHhcc------chHHHHHHHHHHhhcCCeEEEEechhhhhcccccCCCCchHHHHHHHHHHHHhccCCCC
Confidence                 1233222221      1112223333333467999999998654            11    22333333211  


Q ss_pred             CCCcEEEEEeCCchhhhcc-----CCcceEEecCCChHHHHHHHhhhhcCCC-CCchhHhhhcc
Q 039455          157 GFGSRIIITTRDEHVLKGH-----GVTNIYKVRGLDYVEALQLFHLKVSKGK-QPTDDRVELSK  214 (216)
Q Consensus       157 ~~~~~il~tsr~~~~~~~~-----~~~~~~~l~~l~~~~~~~ll~~~~~~~~-~~~~~~~~l~~  214 (216)
                      ..+.+||++|.-.+.+.-.     ..+..++++.-+.+...++|+-+...=. ..+=+++.|++
T Consensus       288 ~~nvKVI~ATNR~D~LDPALLRPGR~DRkIEfplPd~~gR~~Il~IHtrkM~l~~dvd~e~la~  351 (406)
T COG1222         288 RGNVKVIMATNRPDILDPALLRPGRFDRKIEFPLPDEEGRAEILKIHTRKMNLADDVDLELLAR  351 (406)
T ss_pred             CCCeEEEEecCCccccChhhcCCCcccceeecCCCCHHHHHHHHHHHhhhccCccCcCHHHHHH
Confidence            2456888888766553321     3578899998888888888887765433 22235555554

>PRK14950 DNA polymerase III subunits gamma and tau; Provisional

Probab=98.89  E-value=6.2e-08  Score=83.92  Aligned_cols=182  Identities=13%  Similarity=0.104  Sum_probs=99.4

Q ss_pred             CCcccccccchhHHHHHHHHHhcCCCCeeEEEEEecCCCcHHHHHHHHHHHhcCCCCceEeeccccccccccCchHHHHH
Q 039455           22 PSAVDGLVGIASRMEKMNGYLEAGLDDVRFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLANVREVSVTRGLVPLQEQ  101 (216)
Q Consensus        22 ~~~~~~~vgR~~~~~~l~~~l~~~~~~~~~i~I~G~~GiGKTtL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  101 (216)
                      |..-++++|.+...+.|..++..+ .-...++++|+.|+||||+++.++..+........+-. +       +....+..
T Consensus        12 P~~~~eiiGq~~~~~~L~~~i~~~-~i~~a~Lf~Gp~G~GKTtlA~~lA~~l~c~~~~~~~~~-c-------~~c~~c~~   82 (585)
T PRK14950         12 SQTFAELVGQEHVVQTLRNAIAEG-RVAHAYLFTGPRGVGKTSTARILAKAVNCTTNDPKGRP-C-------GTCEMCRA   82 (585)
T ss_pred             CCCHHHhcCCHHHHHHHHHHHHhC-CCceEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCC-C-------ccCHHHHH
Confidence            445667999999999998888754 23467799999999999999999987642211100000 0       01111111


Q ss_pred             HHHHHHhhc---cc-cccchhhhHHHHHHH-----hCCceEEEEEeCCCCH--HHHHHhhcCCCCCCCCcEEEEEeCCc-
Q 039455          102 LLSEVLMER---NL-IIWDVHKGINLIRWR-----LCRKRVLVVLDDVDQL--EQLQALAGNHDWFGFGSRIIITTRDE-  169 (216)
Q Consensus       102 l~~~~~~~~---~~-~~~~~~~~~~~l~~~-----l~~~~~llvlDd~~~~--~~~~~l~~~~~~~~~~~~il~tsr~~-  169 (216)
                      +........   +. .....+... .+...     ...+.-++|||+++.+  +..+.++..+..-...+.+|+++.+. 
T Consensus        83 i~~~~~~d~~~i~~~~~~~vd~ir-~ii~~~~~~p~~~~~kVvIIDEa~~L~~~a~naLLk~LEepp~~tv~Il~t~~~~  161 (585)
T PRK14950         83 IAEGSAVDVIEMDAASHTSVDDAR-EIIERVQFRPALARYKVYIIDEVHMLSTAAFNALLKTLEEPPPHAIFILATTEVH  161 (585)
T ss_pred             HhcCCCCeEEEEeccccCCHHHHH-HHHHHHhhCcccCCeEEEEEeChHhCCHHHHHHHHHHHhcCCCCeEEEEEeCChh
Confidence            111000000   00 001111111 11111     1245679999999755  44666665544333455566666443 


Q ss_pred             hhhhcc-CCcceEEecCCChHHHHHHHhhhhcCCC--CCchhHhhhc
Q 039455          170 HVLKGH-GVTNIYKVRGLDYVEALQLFHLKVSKGK--QPTDDRVELS  213 (216)
Q Consensus       170 ~~~~~~-~~~~~~~l~~l~~~~~~~ll~~~~~~~~--~~~~~~~~l~  213 (216)
                      .+...+ .....+++++++..+....+...+...+  .+++.+..|+
T Consensus       162 kll~tI~SR~~~i~f~~l~~~el~~~L~~~a~~egl~i~~eal~~La  208 (585)
T PRK14950        162 KVPATILSRCQRFDFHRHSVADMAAHLRKIAAAEGINLEPGALEAIA  208 (585)
T ss_pred             hhhHHHHhccceeeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHH
Confidence            222221 2346789999999999988887654433  3334444443

>PRK08451 DNA polymerase III subunits gamma and tau; Validated

Probab=98.88  E-value=1.2e-07  Score=80.48  Aligned_cols=179  Identities=15%  Similarity=0.149  Sum_probs=98.8

Q ss_pred             CCcccccccchhHHHHHHHHHhcCCCCeeEEEEEecCCCcHHHHHHHHHHHhcCC-C----CceEeeccccccccc--cC
Q 039455           22 PSAVDGLVGIASRMEKMNGYLEAGLDDVRFIGICGMGGIGKTTLAKVLYNTLKDQ-F----EASSFLANVREVSVT--RG   94 (216)
Q Consensus        22 ~~~~~~~vgR~~~~~~l~~~l~~~~~~~~~i~I~G~~GiGKTtL~~~~~~~~~~~-~----~~~~~~~~~~~~~~~--~~   94 (216)
                      |..-++++|.+...+.|...+..+ .-...+.++|+.|+||||+|+.++..+... .    ++...-.+ ......  ..
T Consensus        10 P~~fdeiiGqe~v~~~L~~~I~~g-rl~hayLf~Gp~G~GKTt~Ar~LAk~L~c~~~~~~~pC~~C~~C-~~~~~~~h~d   87 (535)
T PRK08451         10 PKHFDELIGQESVSKTLSLALDNN-RLAHAYLFSGLRGSGKTSSARIFARALVCEQGPSSTPCDTCIQC-QSALENRHID   87 (535)
T ss_pred             CCCHHHccCcHHHHHHHHHHHHcC-CCCeeEEEECCCCCcHHHHHHHHHHHhcCCCCCCCCCCcccHHH-HHHhhcCCCe
Confidence            345667999999999999988754 334567999999999999999999875321 1    11000000 000000  00


Q ss_pred             chHHHHHHHHHHHhhccccccchhhhHHHHHH----HhCCceEEEEEeCCCCH--HHHHHhhcCCCCCCCCcEEEEEeCC
Q 039455           95 LVPLQEQLLSEVLMERNLIIWDVHKGINLIRW----RLCRKRVLVVLDDVDQL--EQLQALAGNHDWFGFGSRIIITTRD  168 (216)
Q Consensus        95 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~----~l~~~~~llvlDd~~~~--~~~~~l~~~~~~~~~~~~il~tsr~  168 (216)
                      +...           ........+.....+..    ...++.-++|||+++..  +....++..+..-...+.+|++|.+
T Consensus        88 v~el-----------daas~~gId~IRelie~~~~~P~~~~~KVvIIDEad~Lt~~A~NALLK~LEEpp~~t~FIL~ttd  156 (535)
T PRK08451         88 IIEM-----------DAASNRGIDDIRELIEQTKYKPSMARFKIFIIDEVHMLTKEAFNALLKTLEEPPSYVKFILATTD  156 (535)
T ss_pred             EEEe-----------ccccccCHHHHHHHHHHHhhCcccCCeEEEEEECcccCCHHHHHHHHHHHhhcCCceEEEEEECC
Confidence            0000           00000001111111111    11245569999999865  4455555554433455667777765


Q ss_pred             ch-hhhcc-CCcceEEecCCChHHHHHHHhhhhcCCC--CCchhHhhhc
Q 039455          169 EH-VLKGH-GVTNIYKVRGLDYVEALQLFHLKVSKGK--QPTDDRVELS  213 (216)
Q Consensus       169 ~~-~~~~~-~~~~~~~l~~l~~~~~~~ll~~~~~~~~--~~~~~~~~l~  213 (216)
                      .. +...+ .....+++.+++.++..+.+...+-..+  .+++.++.|+
T Consensus       157 ~~kL~~tI~SRc~~~~F~~Ls~~ei~~~L~~Il~~EGi~i~~~Al~~Ia  205 (535)
T PRK08451        157 PLKLPATILSRTQHFRFKQIPQNSIISHLKTILEKEGVSYEPEALEILA  205 (535)
T ss_pred             hhhCchHHHhhceeEEcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHH
Confidence            42 21111 2247899999999999999987654443  2334555444

>PRK06305 DNA polymerase III subunits gamma and tau; Validated

Probab=98.88  E-value=1e-07  Score=79.90  Aligned_cols=182  Identities=13%  Similarity=0.153  Sum_probs=97.5

Q ss_pred             CCcccccccchhHHHHHHHHHhcCCCCeeEEEEEecCCCcHHHHHHHHHHHhcCCC------CceEeeccccccccc--c
Q 039455           22 PSAVDGLVGIASRMEKMNGYLEAGLDDVRFIGICGMGGIGKTTLAKVLYNTLKDQF------EASSFLANVREVSVT--R   93 (216)
Q Consensus        22 ~~~~~~~vgR~~~~~~l~~~l~~~~~~~~~i~I~G~~GiGKTtL~~~~~~~~~~~~------~~~~~~~~~~~~~~~--~   93 (216)
                      |..-.+++|.+..++.|..++..+ .-...+.++|++|+|||++|+.++..+...-      ++..... +......  .
T Consensus        13 P~~~~diiGq~~~v~~L~~~i~~~-~i~ha~Lf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~c~~c~~-C~~i~~~~~~   90 (451)
T PRK06305         13 PQTFSEILGQDAVVAVLKNALRFN-RAAHAYLFSGIRGTGKTTLARIFAKALNCQNPTEDQEPCNQCAS-CKEISSGTSL   90 (451)
T ss_pred             CCCHHHhcCcHHHHHHHHHHHHcC-CCceEEEEEcCCCCCHHHHHHHHHHHhcCCCcccCCCCCcccHH-HHHHhcCCCC
Confidence            345677999999999999988753 2346789999999999999999998764321      0100000 0000000  0


Q ss_pred             CchHHHHHHHHHHHhhccccccchhhhHHHHH-HHhCCceEEEEEeCCCCH--HHHHHhhcCCCCCCCCcEEEEEeCCc-
Q 039455           94 GLVPLQEQLLSEVLMERNLIIWDVHKGINLIR-WRLCRKRVLVVLDDVDQL--EQLQALAGNHDWFGFGSRIIITTRDE-  169 (216)
Q Consensus        94 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~-~~l~~~~~llvlDd~~~~--~~~~~l~~~~~~~~~~~~il~tsr~~-  169 (216)
                      ++..+        .+.......+.......+. ....+++-++|+|+++..  +....++..+..-.....+|++|... 
T Consensus        91 d~~~i--------~g~~~~gid~ir~i~~~l~~~~~~~~~kvvIIdead~lt~~~~n~LLk~lEep~~~~~~Il~t~~~~  162 (451)
T PRK06305         91 DVLEI--------DGASHRGIEDIRQINETVLFTPSKSRYKIYIIDEVHMLTKEAFNSLLKTLEEPPQHVKFFLATTEIH  162 (451)
T ss_pred             ceEEe--------eccccCCHHHHHHHHHHHHhhhhcCCCEEEEEecHHhhCHHHHHHHHHHhhcCCCCceEEEEeCChH
Confidence            00000        0000000000111111111 112245678999999755  34445554444323455566666433 


Q ss_pred             hhhhcc-CCcceEEecCCChHHHHHHHhhhhcCCC--CCchhHhhhc
Q 039455          170 HVLKGH-GVTNIYKVRGLDYVEALQLFHLKVSKGK--QPTDDRVELS  213 (216)
Q Consensus       170 ~~~~~~-~~~~~~~l~~l~~~~~~~ll~~~~~~~~--~~~~~~~~l~  213 (216)
                      .+...+ .....+++++++.++....+.+.+-..+  .+.+.++.|+
T Consensus       163 kl~~tI~sRc~~v~f~~l~~~el~~~L~~~~~~eg~~i~~~al~~L~  209 (451)
T PRK06305        163 KIPGTILSRCQKMHLKRIPEETIIDKLALIAKQEGIETSREALLPIA  209 (451)
T ss_pred             hcchHHHHhceEEeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHH
Confidence            222222 2346899999999999998887653333  3334444443

>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional

Probab=98.87  E-value=2.8e-08  Score=87.73  Aligned_cols=153  Identities=16%  Similarity=0.117  Sum_probs=88.2

Q ss_pred             cccccchhHHHHHHHHHhcCCCCeeEEEEEecCCCcHHHHHHHHHHHhcCC-CC-----ceEeeccccccccccCchHHH
Q 039455           26 DGLVGIASRMEKMNGYLEAGLDDVRFIGICGMGGIGKTTLAKVLYNTLKDQ-FE-----ASSFLANVREVSVTRGLVPLQ   99 (216)
Q Consensus        26 ~~~vgR~~~~~~l~~~l~~~~~~~~~i~I~G~~GiGKTtL~~~~~~~~~~~-~~-----~~~~~~~~~~~~~~~~~~~~~   99 (216)
                      ++++||+.++.++...|....  ...++++|++|+|||++++.++..+... .+     ...|..         ++    
T Consensus       186 ~~liGR~~ei~~~i~iL~r~~--~~n~LLvGppGvGKT~lae~la~~i~~~~vP~~l~~~~~~~l---------~~----  250 (758)
T PRK11034        186 DPLIGREKELERAIQVLCRRR--KNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSL---------DI----  250 (758)
T ss_pred             CcCcCCCHHHHHHHHHHhccC--CCCeEEECCCCCCHHHHHHHHHHHHHhcCCCchhcCCeEEec---------cH----
Confidence            579999999999999887642  3566789999999999999999875432 11     122211         00    


Q ss_pred             HHHHHHHHhhccccccchhhhHHHHHHHh-CCceEEEEEeCCCCH----------HHHHHhhcCCCCCCCCcEEEEEeCC
Q 039455          100 EQLLSEVLMERNLIIWDVHKGINLIRWRL-CRKRVLVVLDDVDQL----------EQLQALAGNHDWFGFGSRIIITTRD  168 (216)
Q Consensus       100 ~~l~~~~~~~~~~~~~~~~~~~~~l~~~l-~~~~~llvlDd~~~~----------~~~~~l~~~~~~~~~~~~il~tsr~  168 (216)
                      ..++.    ... ..-+++.....+...+ ..++.+|+|||++.+          .+...++..+.. .....+|.+|..
T Consensus       251 ~~lla----G~~-~~Ge~e~rl~~l~~~l~~~~~~ILfIDEIh~L~g~g~~~~g~~d~~nlLkp~L~-~g~i~vIgATt~  324 (758)
T PRK11034        251 GSLLA----GTK-YRGDFEKRFKALLKQLEQDTNSILFIDEIHTIIGAGAASGGQVDAANLIKPLLS-SGKIRVIGSTTY  324 (758)
T ss_pred             HHHhc----ccc-hhhhHHHHHHHHHHHHHhcCCCEEEeccHHHHhccCCCCCcHHHHHHHHHHHHh-CCCeEEEecCCh
Confidence            11110    000 0112222222222222 345679999999633          223223322211 223455656554


Q ss_pred             chhhhc-------cCCcceEEecCCChHHHHHHHhhhh
Q 039455          169 EHVLKG-------HGVTNIYKVRGLDYVEALQLFHLKV  199 (216)
Q Consensus       169 ~~~~~~-------~~~~~~~~l~~l~~~~~~~ll~~~~  199 (216)
                      .++...       ...+..+.+++++.+++.++|+...
T Consensus       325 ~E~~~~~~~D~AL~rRFq~I~v~ePs~~~~~~IL~~~~  362 (758)
T PRK11034        325 QEFSNIFEKDRALARRFQKIDITEPSIEETVQIINGLK  362 (758)
T ss_pred             HHHHHHhhccHHHHhhCcEEEeCCCCHHHHHHHHHHHH
Confidence            443111       1245789999999999999998643

>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos)

Probab=98.87  E-value=7.8e-09  Score=75.10  Aligned_cols=126  Identities=17%  Similarity=0.165  Sum_probs=72.9

Q ss_pred             CCeeEEEEEecCCCcHHHHHHHHHHHhcCCCCceEeeccccccccccCchHHHHHHHHHHHhhccccccchhhhHHHHHH
Q 039455           47 DDVRFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLANVREVSVTRGLVPLQEQLLSEVLMERNLIIWDVHKGINLIRW  126 (216)
Q Consensus        47 ~~~~~i~I~G~~GiGKTtL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~  126 (216)
                      ..+..++|.|++|+|||||++.+++..... ...+++... .... ....    ..... ......+.+..+...-.+..
T Consensus        24 ~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~-~G~v~~~g~-~~~~-~~~~----~~~~~-~i~~~~qLS~G~~qrl~lar   95 (163)
T cd03216          24 RRGEVHALLGENGAGKSTLMKILSGLYKPD-SGEILVDGK-EVSF-ASPR----DARRA-GIAMVYQLSVGERQMVEIAR   95 (163)
T ss_pred             eCCCEEEEECCCCCCHHHHHHHHhCCCCCC-CeEEEECCE-ECCc-CCHH----HHHhc-CeEEEEecCHHHHHHHHHHH
Confidence            346899999999999999999999876433 333443311 1100 0000    01110 00011123344455556888


Q ss_pred             HhCCceEEEEEeCCCC------HHHHHHhhcCCCCCCCCcEEEEEeCCchhhhccCCcceEEe
Q 039455          127 RLCRKRVLVVLDDVDQ------LEQLQALAGNHDWFGFGSRIIITTRDEHVLKGHGVTNIYKV  183 (216)
Q Consensus       127 ~l~~~~~llvlDd~~~------~~~~~~l~~~~~~~~~~~~il~tsr~~~~~~~~~~~~~~~l  183 (216)
                      .+..++-++++|+..+      .+.+..++..+.  ..+..+|++||+.+....+ ++..+.+
T Consensus        96 al~~~p~illlDEP~~~LD~~~~~~l~~~l~~~~--~~~~tiii~sh~~~~~~~~-~d~~~~l  155 (163)
T cd03216          96 ALARNARLLILDEPTAALTPAEVERLFKVIRRLR--AQGVAVIFISHRLDEVFEI-ADRVTVL  155 (163)
T ss_pred             HHhcCCCEEEEECCCcCCCHHHHHHHHHHHHHHH--HCCCEEEEEeCCHHHHHHh-CCEEEEE
Confidence            8889999999998732      233444443332  2467899999998765544 3444444

The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.

>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome

Probab=98.87  E-value=2.2e-08  Score=72.96  Aligned_cols=126  Identities=17%  Similarity=0.134  Sum_probs=72.9

Q ss_pred             CCeeEEEEEecCCCcHHHHHHHHHHHhcCCCCceEeecc---ccccccccCc--hHHHHHHHHHHHhhccccccchhhhH
Q 039455           47 DDVRFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLAN---VREVSVTRGL--VPLQEQLLSEVLMERNLIIWDVHKGI  121 (216)
Q Consensus        47 ~~~~~i~I~G~~GiGKTtL~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~~~~~~~~  121 (216)
                      ..+..++|.|++|+|||||++.+++.+... ...+++..   .........+  ....+.+..    ......+..+...
T Consensus        25 ~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~-~G~i~~~~~~~i~~~~q~~~~~~~tv~~nl~~----~~~~~LS~G~~~r   99 (166)
T cd03223          25 KPGDRLLITGPSGTGKSSLFRALAGLWPWG-SGRIGMPEGEDLLFLPQRPYLPLGTLREQLIY----PWDDVLSGGEQQR   99 (166)
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhcCCCCC-CceEEECCCceEEEECCCCccccccHHHHhhc----cCCCCCCHHHHHH
Confidence            356899999999999999999999865433 22222211   1111111111  112222211    0122334445556


Q ss_pred             HHHHHHhCCceEEEEEeCCC------CHHHHHHhhcCCCCCCCCcEEEEEeCCchhhhccCCcceEEec
Q 039455          122 NLIRWRLCRKRVLVVLDDVD------QLEQLQALAGNHDWFGFGSRIIITTRDEHVLKGHGVTNIYKVR  184 (216)
Q Consensus       122 ~~l~~~l~~~~~llvlDd~~------~~~~~~~l~~~~~~~~~~~~il~tsr~~~~~~~~~~~~~~~l~  184 (216)
                      -.+.+.+..++-++++|+..      ....+..++..+     +..+|++||+.+... . +++.+.+.
T Consensus       100 v~laral~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~-----~~tiiivsh~~~~~~-~-~d~i~~l~  161 (166)
T cd03223         100 LAFARLLLHKPKFVFLDEATSALDEESEDRLYQLLKEL-----GITVISVGHRPSLWK-F-HDRVLDLD  161 (166)
T ss_pred             HHHHHHHHcCCCEEEEECCccccCHHHHHHHHHHHHHh-----CCEEEEEeCChhHHh-h-CCEEEEEc
Confidence            67888888999999999773      223343444332     367999999987653 2 56666553

The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt

>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]

Probab=98.87  E-value=9.9e-09  Score=87.08  Aligned_cols=62  Identities=19%  Similarity=0.276  Sum_probs=45.9

Q ss_pred             hhhHHHHHHHhCCceEEEEEeCCC------CHHHHHHhhcCCCCCCCCcEEEEEeCCchhhhccCCcceEEecC
Q 039455          118 HKGINLIRWRLCRKRVLVVLDDVD------QLEQLQALAGNHDWFGFGSRIIITTRDEHVLKGHGVTNIYKVRG  185 (216)
Q Consensus       118 ~~~~~~l~~~l~~~~~llvlDd~~------~~~~~~~l~~~~~~~~~~~~il~tsr~~~~~~~~~~~~~~~l~~  185 (216)
                      ......+.+++-.++-+|+||+.-      +...++.++..+.    + .+|++||+.++++.. |.+.+++..
T Consensus       158 ~r~Rv~LA~aL~~~pDlLLLDEPTNHLD~~~i~WLe~~L~~~~----g-tviiVSHDR~FLd~V-~t~I~~ld~  225 (530)
T COG0488         158 WRRRVALARALLEEPDLLLLDEPTNHLDLESIEWLEDYLKRYP----G-TVIVVSHDRYFLDNV-ATHILELDR  225 (530)
T ss_pred             HHHHHHHHHHHhcCCCEEEEcCCCcccCHHHHHHHHHHHHhCC----C-cEEEEeCCHHHHHHH-hhheEEecC
Confidence            345567888999999999999763      4455566666543    4 899999999998887 556666554

>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids

Probab=98.86  E-value=1.1e-08  Score=75.20  Aligned_cols=110  Identities=17%  Similarity=0.100  Sum_probs=65.4

Q ss_pred             CCeeEEEEEecCCCcHHHHHHHHHHHhcCCCCceEeeccccccccccCchHHHHHHHHHHHhhccccccchhhhHHHHHH
Q 039455           47 DDVRFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLANVREVSVTRGLVPLQEQLLSEVLMERNLIIWDVHKGINLIRW  126 (216)
Q Consensus        47 ~~~~~i~I~G~~GiGKTtL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~  126 (216)
                      ..+..++|.|++|+|||||++.+++..... ...+++... .......                ....+..+...-.+..
T Consensus        23 ~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~-~G~i~~~g~-~i~~~~q----------------~~~LSgGq~qrv~lar   84 (177)
T cd03222          23 KEGEVIGIVGPNGTGKTTAVKILAGQLIPN-GDNDEWDGI-TPVYKPQ----------------YIDLSGGELQRVAIAA   84 (177)
T ss_pred             CCCCEEEEECCCCChHHHHHHHHHcCCCCC-CcEEEECCE-EEEEEcc----------------cCCCCHHHHHHHHHHH
Confidence            345799999999999999999999866543 233333210 0000000                0002333444556788


Q ss_pred             HhCCceEEEEEeCCCC------HHHHHHhhcCCCCCCCCcEEEEEeCCchhhhcc
Q 039455          127 RLCRKRVLVVLDDVDQ------LEQLQALAGNHDWFGFGSRIIITTRDEHVLKGH  175 (216)
Q Consensus       127 ~l~~~~~llvlDd~~~------~~~~~~l~~~~~~~~~~~~il~tsr~~~~~~~~  175 (216)
                      .+..++-++++|+.-+      ...+..++..+.. ..+..+|++||+.+....+
T Consensus        85 al~~~p~lllLDEPts~LD~~~~~~l~~~l~~~~~-~~~~tiiivsH~~~~~~~~  138 (177)
T cd03222          85 ALLRNATFYLFDEPSAYLDIEQRLNAARAIRRLSE-EGKKTALVVEHDLAVLDYL  138 (177)
T ss_pred             HHhcCCCEEEEECCcccCCHHHHHHHHHHHHHHHH-cCCCEEEEEECCHHHHHHh
Confidence            8888999999998732      1223333333221 1236799999998776544

RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.

>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]

Probab=98.86  E-value=6.1e-09  Score=78.52  Aligned_cols=69  Identities=16%  Similarity=0.193  Sum_probs=47.7

Q ss_pred             cccchhhhHHHHHHHhCCceEEEEEeCC----C--CHHHHHHhhcCCCCCCCCcEEEEEeCCchhhhccCCcceEEec
Q 039455          113 IIWDVHKGINLIRWRLCRKRVLVVLDDV----D--QLEQLQALAGNHDWFGFGSRIIITTRDEHVLKGHGVTNIYKVR  184 (216)
Q Consensus       113 ~~~~~~~~~~~l~~~l~~~~~llvlDd~----~--~~~~~~~l~~~~~~~~~~~~il~tsr~~~~~~~~~~~~~~~l~  184 (216)
                      +.+..+....++.+++..+|-+|+-|+.    |  +.+.+-.++..+. ...+..+|+.||++.++..  ++..+.++
T Consensus       142 eLSGGqqQRVAIARAL~~~P~iilADEPTgnLD~~t~~~V~~ll~~~~-~~~g~tii~VTHd~~lA~~--~dr~i~l~  216 (226)
T COG1136         142 ELSGGQQQRVAIARALINNPKIILADEPTGNLDSKTAKEVLELLRELN-KERGKTIIMVTHDPELAKY--ADRVIELK  216 (226)
T ss_pred             hcCHHHHHHHHHHHHHhcCCCeEEeeCccccCChHHHHHHHHHHHHHH-HhcCCEEEEEcCCHHHHHh--CCEEEEEe
Confidence            3445566677899999999999999976    2  2244444444432 1246789999999998886  45555554

>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX

Probab=98.85  E-value=1e-07  Score=75.38  Aligned_cols=153  Identities=14%  Similarity=0.153  Sum_probs=82.9

Q ss_pred             ccccchhHHHHHHHHHh----------cC---CCCeeEEEEEecCCCcHHHHHHHHHHHhcCCCC--ceEeecccccccc
Q 039455           27 GLVGIASRMEKMNGYLE----------AG---LDDVRFIGICGMGGIGKTTLAKVLYNTLKDQFE--ASSFLANVREVSV   91 (216)
Q Consensus        27 ~~vgR~~~~~~l~~~l~----------~~---~~~~~~i~I~G~~GiGKTtL~~~~~~~~~~~~~--~~~~~~~~~~~~~   91 (216)
                      .++|-++..+++.++..          .+   ......++++|++|+|||++|+.++..+.....  ...|+...     
T Consensus        23 ~l~Gl~~vk~~i~e~~~~~~~~~~r~~~g~~~~~~~~~vll~G~pGTGKT~lA~~ia~~l~~~g~~~~~~~v~v~-----   97 (284)
T TIGR02880        23 ELIGLKPVKTRIREIAALLLVERLRQRLGLASAAPTLHMSFTGNPGTGKTTVALRMAQILHRLGYVRKGHLVSVT-----   97 (284)
T ss_pred             hccCHHHHHHHHHHHHHHHHHHHHHHHhCCCcCCCCceEEEEcCCCCCHHHHHHHHHHHHHHcCCcccceEEEec-----
Confidence            46888877777655321          01   112347999999999999999999886654211  11222100     


Q ss_pred             ccCchHHHHHHHHHHHhhccccccchhhhHHHHHHHhCCceEEEEEeCCCCH-----------HHHHHhhcCCCCCCCCc
Q 039455           92 TRGLVPLQEQLLSEVLMERNLIIWDVHKGINLIRWRLCRKRVLVVLDDVDQL-----------EQLQALAGNHDWFGFGS  160 (216)
Q Consensus        92 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~llvlDd~~~~-----------~~~~~l~~~~~~~~~~~  160 (216)
                             ...+...+.+..      .......+...   ..-+|+|||++.+           +....++..+.....+.
T Consensus        98 -------~~~l~~~~~g~~------~~~~~~~~~~a---~~gvL~iDEi~~L~~~~~~~~~~~~~~~~Ll~~le~~~~~~  161 (284)
T TIGR02880        98 -------RDDLVGQYIGHT------APKTKEILKRA---MGGVLFIDEAYYLYRPDNERDYGQEAIEILLQVMENQRDDL  161 (284)
T ss_pred             -------HHHHhHhhcccc------hHHHHHHHHHc---cCcEEEEechhhhccCCCccchHHHHHHHHHHHHhcCCCCE
Confidence                   011222111110      11111222221   2359999999743           12333443333223455


Q ss_pred             EEEEEeCCchhhhcc--------CCcceEEecCCChHHHHHHHhhhhc
Q 039455          161 RIIITTRDEHVLKGH--------GVTNIYKVRGLDYVEALQLFHLKVS  200 (216)
Q Consensus       161 ~il~tsr~~~~~~~~--------~~~~~~~l~~l~~~~~~~ll~~~~~  200 (216)
                      .+|+++........+        .....+++++++.++..+++..++-
T Consensus       162 ~vI~a~~~~~~~~~~~~np~L~sR~~~~i~fp~l~~edl~~I~~~~l~  209 (284)
T TIGR02880       162 VVILAGYKDRMDSFFESNPGFSSRVAHHVDFPDYSEAELLVIAGLMLK  209 (284)
T ss_pred             EEEEeCCcHHHHHHHhhCHHHHhhCCcEEEeCCcCHHHHHHHHHHHHH
Confidence            666666543221111        1356799999999999999987763

Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.

>PRK07133 DNA polymerase III subunits gamma and tau; Validated

Probab=98.85  E-value=1.1e-07  Score=82.87  Aligned_cols=170  Identities=16%  Similarity=0.201  Sum_probs=93.1

Q ss_pred             CCcccccccchhHHHHHHHHHhcCCCCeeEEEEEecCCCcHHHHHHHHHHHhcCCCCceEeeccccccc----cccCchH
Q 039455           22 PSAVDGLVGIASRMEKMNGYLEAGLDDVRFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLANVREVS----VTRGLVP   97 (216)
Q Consensus        22 ~~~~~~~vgR~~~~~~l~~~l~~~~~~~~~i~I~G~~GiGKTtL~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~   97 (216)
                      |..-..++|.+...+.|...+..+ .-...+.++||.|+|||++|+.++..+........+-. +..+.    ...++..
T Consensus        14 P~~f~dIiGQe~~v~~L~~aI~~~-rl~HAYLF~GP~GtGKTt~AriLAk~LnC~~~~~~~~p-C~~C~~~~~~~~Dvie   91 (725)
T PRK07133         14 PKTFDDIVGQDHIVQTLKNIIKSN-KISHAYLFSGPRGTGKTSVAKIFANALNCSHKTDLLEP-CQECIENVNNSLDIIE   91 (725)
T ss_pred             CCCHHHhcCcHHHHHHHHHHHHcC-CCCeEEEEECCCCCcHHHHHHHHHHHhcccccCCCCCc-hhHHHHhhcCCCcEEE
Confidence            445667899999999999988754 23467789999999999999999986542211100100 00000    0000000


Q ss_pred             HHHHHHHHHHhhccccccchhhhHHHHH-HHhCCceEEEEEeCCCCH--HHHHHhhcCCCCCCCCcEEEEEeCC-chhhh
Q 039455           98 LQEQLLSEVLMERNLIIWDVHKGINLIR-WRLCRKRVLVVLDDVDQL--EQLQALAGNHDWFGFGSRIIITTRD-EHVLK  173 (216)
Q Consensus        98 ~~~~l~~~~~~~~~~~~~~~~~~~~~l~-~~l~~~~~llvlDd~~~~--~~~~~l~~~~~~~~~~~~il~tsr~-~~~~~  173 (216)
                      .        .............+.+.+. ....++.-++|||+++..  +.+..++..+..-.....+|++|.. ..+..
T Consensus        92 i--------daasn~~vd~IReLie~~~~~P~~g~~KV~IIDEa~~LT~~A~NALLKtLEEPP~~tifILaTte~~KLl~  163 (725)
T PRK07133         92 M--------DAASNNGVDEIRELIENVKNLPTQSKYKIYIIDEVHMLSKSAFNALLKTLEEPPKHVIFILATTEVHKIPL  163 (725)
T ss_pred             E--------eccccCCHHHHHHHHHHHHhchhcCCCEEEEEEChhhCCHHHHHHHHHHhhcCCCceEEEEEcCChhhhhH
Confidence            0        0000000000111111111 112345669999999755  4556666554432334445555543 33332


Q ss_pred             cc-CCcceEEecCCChHHHHHHHhhhhcC
Q 039455          174 GH-GVTNIYKVRGLDYVEALQLFHLKVSK  201 (216)
Q Consensus       174 ~~-~~~~~~~l~~l~~~~~~~ll~~~~~~  201 (216)
                      .+ .....+++.+++.++..+.+...+-.
T Consensus       164 TI~SRcq~ieF~~L~~eeI~~~L~~il~k  192 (725)
T PRK07133        164 TILSRVQRFNFRRISEDEIVSRLEFILEK  192 (725)
T ss_pred             HHHhhceeEEccCCCHHHHHHHHHHHHHH
Confidence            22 22368999999999999999875533

>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport

Probab=98.85  E-value=1.6e-08  Score=70.45  Aligned_cols=23  Identities=48%  Similarity=0.540  Sum_probs=21.2

Q ss_pred             EEEEecCCCcHHHHHHHHHHHhc
Q 039455           52 IGICGMGGIGKTTLAKVLYNTLK   74 (216)
Q Consensus        52 i~I~G~~GiGKTtL~~~~~~~~~   74 (216)
                      |+|+||+|+|||++++.+++.+.
T Consensus         1 ill~G~~G~GKT~l~~~la~~l~   23 (132)
T PF00004_consen    1 ILLHGPPGTGKTTLARALAQYLG   23 (132)
T ss_dssp             EEEESSTTSSHHHHHHHHHHHTT
T ss_pred             CEEECcCCCCeeHHHHHHHhhcc
Confidence            68999999999999999999874

Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....

>PRK14954 DNA polymerase III subunits gamma and tau; Provisional

Probab=98.85  E-value=1.1e-07  Score=82.24  Aligned_cols=188  Identities=14%  Similarity=0.098  Sum_probs=98.9

Q ss_pred             CCcccccccchhHHHHHHHHHhcCCCCeeEEEEEecCCCcHHHHHHHHHHHhcCCC--CceEeeccccccccccCchHHH
Q 039455           22 PSAVDGLVGIASRMEKMNGYLEAGLDDVRFIGICGMGGIGKTTLAKVLYNTLKDQF--EASSFLANVREVSVTRGLVPLQ   99 (216)
Q Consensus        22 ~~~~~~~vgR~~~~~~l~~~l~~~~~~~~~i~I~G~~GiGKTtL~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~   99 (216)
                      |..-++++|.+...+.|.+.+..+ .-...++++||.|+||||+|+.++..+...-  ....|......   .-+-...+
T Consensus        12 P~~f~eivGQe~i~~~L~~~i~~~-ri~ha~Lf~Gp~GvGKttlA~~lAk~L~c~~~~~~~~~~~~~~~---~Cg~C~sC   87 (620)
T PRK14954         12 PSKFADITAQEHITHTIQNSLRMD-RVGHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDPVYLQEVTE---PCGECESC   87 (620)
T ss_pred             CCCHHHhcCcHHHHHHHHHHHHcC-CCCeeEEEECCCCCCHHHHHHHHHHHhCCCCcCCccccccccCC---CCccCHHH
Confidence            344667999999999999988753 3345699999999999999999998764321  00111100000   00000111


Q ss_pred             HHHHHHHHh----hccccccchhhhHHHHHH----HhCCceEEEEEeCCCCH--HHHHHhhcCCCCCCCCcEEEEEeCC-
Q 039455          100 EQLLSEVLM----ERNLIIWDVHKGINLIRW----RLCRKRVLVVLDDVDQL--EQLQALAGNHDWFGFGSRIIITTRD-  168 (216)
Q Consensus       100 ~~l~~~~~~----~~~~~~~~~~~~~~~l~~----~l~~~~~llvlDd~~~~--~~~~~l~~~~~~~~~~~~il~tsr~-  168 (216)
                      ..+...-..    .........+........    .+.+++-++|+|+++..  ...+.++..+..-...+.+|++|.. 
T Consensus        88 ~~~~~g~~~n~~~~d~~s~~~vd~Ir~l~e~~~~~P~~~~~KVvIIdEad~Lt~~a~naLLK~LEePp~~tv~IL~t~~~  167 (620)
T PRK14954         88 RDFDAGTSLNISEFDAASNNSVDDIRQLRENVRYGPQKGRYRVYIIDEVHMLSTAAFNAFLKTLEEPPPHAIFIFATTEL  167 (620)
T ss_pred             HHHhccCCCCeEEecccccCCHHHHHHHHHHHHhhhhcCCCEEEEEeChhhcCHHHHHHHHHHHhCCCCCeEEEEEeCCh
Confidence            111000000    000000011122211111    23345668999999765  3455555544432334555555543 


Q ss_pred             chhhhcc-CCcceEEecCCChHHHHHHHhhhhcCCC--CCchhHhhhc
Q 039455          169 EHVLKGH-GVTNIYKVRGLDYVEALQLFHLKVSKGK--QPTDDRVELS  213 (216)
Q Consensus       169 ~~~~~~~-~~~~~~~l~~l~~~~~~~ll~~~~~~~~--~~~~~~~~l~  213 (216)
                      ..+...+ .....+++.+++.++....+.+.+-..+  .+++.++.|+
T Consensus       168 ~kLl~TI~SRc~~vef~~l~~~ei~~~L~~i~~~egi~I~~eal~~La  215 (620)
T PRK14954        168 HKIPATIASRCQRFNFKRIPLDEIQSQLQMICRAEGIQIDADALQLIA  215 (620)
T ss_pred             hhhhHHHHhhceEEecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHH
Confidence            3333222 2457899999999999988887654333  3444444443

>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=98.84  E-value=2.3e-08  Score=75.78  Aligned_cols=127  Identities=20%  Similarity=0.174  Sum_probs=71.0

Q ss_pred             CCeeEEEEEecCCCcHHHHHHHHHHHhcC------------------------CCCceEeeccccccccccCc-------
Q 039455           47 DDVRFIGICGMGGIGKTTLAKVLYNTLKD------------------------QFEASSFLANVREVSVTRGL-------   95 (216)
Q Consensus        47 ~~~~~i~I~G~~GiGKTtL~~~~~~~~~~------------------------~~~~~~~~~~~~~~~~~~~~-------   95 (216)
                      ..+..++|.||+|+|||||++.+++-.+.                        ++....|.+...+.......       
T Consensus        27 ~~GEfvsilGpSGcGKSTLLriiAGL~~p~~G~V~~~g~~v~~p~~~~~~vFQ~~~LlPW~Tv~~NV~l~l~~~~~~~~e  106 (248)
T COG1116          27 EKGEFVAILGPSGCGKSTLLRLIAGLEKPTSGEVLLDGRPVTGPGPDIGYVFQEDALLPWLTVLDNVALGLELRGKSKAE  106 (248)
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCcccCCCCCCEEEEeccCcccchhhHHhhheehhhccccchHh
Confidence            45689999999999999999999984332                        12223333322221111111       


Q ss_pred             -hHHHHHHHHHH-----HhhccccccchhhhHHHHHHHhCCceEEEEEeCCCC-HH-----HHHHhh-cCCCCCCCCcEE
Q 039455           96 -VPLQEQLLSEV-----LMERNLIIWDVHKGINLIRWRLCRKRVLVVLDDVDQ-LE-----QLQALA-GNHDWFGFGSRI  162 (216)
Q Consensus        96 -~~~~~~l~~~~-----~~~~~~~~~~~~~~~~~l~~~l~~~~~llvlDd~~~-~~-----~~~~l~-~~~~~~~~~~~i  162 (216)
                       ......++...     ....+.+.+........+.+.+..++-+|++|+.-+ ++     .+.+.+ ....  ..+.++
T Consensus       107 ~~~~a~~~L~~VgL~~~~~~~P~qLSGGMrQRVaiARAL~~~P~lLLlDEPFgALDalTR~~lq~~l~~lw~--~~~~Tv  184 (248)
T COG1116         107 ARERAKELLELVGLAGFEDKYPHQLSGGMRQRVAIARALATRPKLLLLDEPFGALDALTREELQDELLRLWE--ETRKTV  184 (248)
T ss_pred             HHHHHHHHHHHcCCcchhhcCccccChHHHHHHHHHHHHhcCCCEEEEcCCcchhhHHHHHHHHHHHHHHHH--hhCCEE
Confidence             01112222211     111223334444556679999999999999998732 22     222222 1111  356889


Q ss_pred             EEEeCCchhhhcc
Q 039455          163 IITTRDEHVLKGH  175 (216)
Q Consensus       163 l~tsr~~~~~~~~  175 (216)
                      ++.||+.+.+-.+
T Consensus       185 llVTHdi~EAv~L  197 (248)
T COG1116         185 LLVTHDVDEAVYL  197 (248)
T ss_pred             EEEeCCHHHHHhh
Confidence            9999997654443

>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea

Probab=98.83  E-value=1.8e-08  Score=74.42  Aligned_cols=132  Identities=17%  Similarity=0.197  Sum_probs=73.1

Q ss_pred             CCeeEEEEEecCCCcHHHHHHHHHHHhcCCCCceEeeccccccccccCchH------HHHHHHHHHHh-----hcccccc
Q 039455           47 DDVRFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLANVREVSVTRGLVP------LQEQLLSEVLM-----ERNLIIW  115 (216)
Q Consensus        47 ~~~~~i~I~G~~GiGKTtL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~l~~~~~~-----~~~~~~~  115 (216)
                      ..+..++|.|++|+|||||++.+++..... ...+++... ... ......      ...+++..+.-     ......+
T Consensus        23 ~~G~~~~l~G~nGsGKStLl~~i~G~~~~~-~G~v~~~g~-~~~-~~~~~~~~~~i~~~~q~l~~~gl~~~~~~~~~~LS   99 (180)
T cd03214          23 EAGEIVGILGPNGAGKSTLLKTLAGLLKPS-SGEILLDGK-DLA-SLSPKELARKIAYVPQALELLGLAHLADRPFNELS   99 (180)
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhCCCCCC-CcEEEECCE-ECC-cCCHHHHHHHHhHHHHHHHHcCCHhHhcCCcccCC
Confidence            356899999999999999999999876543 333333211 110 000001      11112222111     1111223


Q ss_pred             chhhhHHHHHHHhCCceEEEEEeCCC------CHHHHHHhhcCCCCCCCCcEEEEEeCCchhhhccCCcceEEe
Q 039455          116 DVHKGINLIRWRLCRKRVLVVLDDVD------QLEQLQALAGNHDWFGFGSRIIITTRDEHVLKGHGVTNIYKV  183 (216)
Q Consensus       116 ~~~~~~~~l~~~l~~~~~llvlDd~~------~~~~~~~l~~~~~~~~~~~~il~tsr~~~~~~~~~~~~~~~l  183 (216)
                      ..+...-.+.+.+...+-++++|+.-      +.+.+..++..+.. ..+..+|++||+.+....+ ++..+.+
T Consensus       100 ~G~~qrl~laral~~~p~llllDEP~~~LD~~~~~~~~~~l~~~~~-~~~~tiii~sh~~~~~~~~-~d~~~~l  171 (180)
T cd03214         100 GGERQRVLLARALAQEPPILLLDEPTSHLDIAHQIELLELLRRLAR-ERGKTVVMVLHDLNLAARY-ADRVILL  171 (180)
T ss_pred             HHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHH-hcCCEEEEEeCCHHHHHHh-CCEEEEE
Confidence            33444556788888999999999873      22334444433321 1257899999998776543 3444444

Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.

>PRK06647 DNA polymerase III subunits gamma and tau; Validated

Probab=98.83  E-value=1.9e-07  Score=80.15  Aligned_cols=179  Identities=12%  Similarity=0.102  Sum_probs=100.8

Q ss_pred             CCcccccccchhHHHHHHHHHhcCCCCeeEEEEEecCCCcHHHHHHHHHHHhcCC-----CCceEeeccccccccc--cC
Q 039455           22 PSAVDGLVGIASRMEKMNGYLEAGLDDVRFIGICGMGGIGKTTLAKVLYNTLKDQ-----FEASSFLANVREVSVT--RG   94 (216)
Q Consensus        22 ~~~~~~~vgR~~~~~~l~~~l~~~~~~~~~i~I~G~~GiGKTtL~~~~~~~~~~~-----~~~~~~~~~~~~~~~~--~~   94 (216)
                      |..-.+++|.+...+.|..++..+ .-...+.++||.|+||||+|+.++..+...     .++..--. +......  .+
T Consensus        12 P~~f~diiGqe~iv~~L~~~i~~~-~i~hayLf~Gp~G~GKTt~Ar~lAk~L~c~~~~~~~pC~~C~~-C~~i~~~~~~d   89 (563)
T PRK06647         12 PRDFNSLEGQDFVVETLKHSIESN-KIANAYIFSGPRGVGKTSSARAFARCLNCVNGPTPMPCGECSS-CKSIDNDNSLD   89 (563)
T ss_pred             CCCHHHccCcHHHHHHHHHHHHcC-CCCeEEEEECCCCCCHHHHHHHHHHhhccccCCCCCCCccchH-HHHHHcCCCCC
Confidence            445677999999999999998754 334679999999999999999999876421     01110000 0000000  00


Q ss_pred             chHHHHHHHHHHHhhccccccchhhhHHHH----HHHhCCceEEEEEeCCCCH--HHHHHhhcCCCCCCCCcEEEEEeCC
Q 039455           95 LVPLQEQLLSEVLMERNLIIWDVHKGINLI----RWRLCRKRVLVVLDDVDQL--EQLQALAGNHDWFGFGSRIIITTRD  168 (216)
Q Consensus        95 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l----~~~l~~~~~llvlDd~~~~--~~~~~l~~~~~~~~~~~~il~tsr~  168 (216)
                      +..+           ........+......    .....++.-++|+|+++..  ..+..++..+..-.....+|++|.+
T Consensus        90 v~~i-----------dgas~~~vddIr~l~e~~~~~p~~~~~KVvIIDEa~~Ls~~a~naLLK~LEepp~~~vfI~~tte  158 (563)
T PRK06647         90 VIEI-----------DGASNTSVQDVRQIKEEIMFPPASSRYRVYIIDEVHMLSNSAFNALLKTIEEPPPYIVFIFATTE  158 (563)
T ss_pred             eEEe-----------cCcccCCHHHHHHHHHHHHhchhcCCCEEEEEEChhhcCHHHHHHHHHhhccCCCCEEEEEecCC
Confidence            0000           000001111111111    1112345668999999765  4466666665543455666666654


Q ss_pred             c-hhhhcc-CCcceEEecCCChHHHHHHHhhhhcCCC--CCchhHhhhc
Q 039455          169 E-HVLKGH-GVTNIYKVRGLDYVEALQLFHLKVSKGK--QPTDDRVELS  213 (216)
Q Consensus       169 ~-~~~~~~-~~~~~~~l~~l~~~~~~~ll~~~~~~~~--~~~~~~~~l~  213 (216)
                      . .+...+ .....+++++++.++..+.+.+.+...+  .+++.+..|+
T Consensus       159 ~~kL~~tI~SRc~~~~f~~l~~~el~~~L~~i~~~egi~id~eAl~lLa  207 (563)
T PRK06647        159 VHKLPATIKSRCQHFNFRLLSLEKIYNMLKKVCLEDQIKYEDEALKWIA  207 (563)
T ss_pred             hHHhHHHHHHhceEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHH
Confidence            3 222222 2346799999999999999887664333  2344444444

>PRK14965 DNA polymerase III subunits gamma and tau; Provisional

Probab=98.83  E-value=9.5e-08  Score=82.49  Aligned_cols=182  Identities=13%  Similarity=0.163  Sum_probs=97.0

Q ss_pred             CCcccccccchhHHHHHHHHHhcCCCCeeEEEEEecCCCcHHHHHHHHHHHhcCCC-----CceEeecccccccc--ccC
Q 039455           22 PSAVDGLVGIASRMEKMNGYLEAGLDDVRFIGICGMGGIGKTTLAKVLYNTLKDQF-----EASSFLANVREVSV--TRG   94 (216)
Q Consensus        22 ~~~~~~~vgR~~~~~~l~~~l~~~~~~~~~i~I~G~~GiGKTtL~~~~~~~~~~~~-----~~~~~~~~~~~~~~--~~~   94 (216)
                      |..-.+++|.+...+.|..++..+ .-...++++||.|+||||+++.++..+...-     ++...-. +.....  ..+
T Consensus        12 P~~f~~iiGq~~v~~~L~~~i~~~-~~~hayLf~Gp~G~GKtt~A~~lak~l~c~~~~~~~~c~~c~~-c~~i~~g~~~d   89 (576)
T PRK14965         12 PQTFSDLTGQEHVSRTLQNAIDTG-RVAHAFLFTGARGVGKTSTARILAKALNCEQGLTAEPCNVCPP-CVEITEGRSVD   89 (576)
T ss_pred             CCCHHHccCcHHHHHHHHHHHHcC-CCCeEEEEECCCCCCHHHHHHHHHHhhcCCCCCCCCCCCccHH-HHHHhcCCCCC
Confidence            345567999999999999988754 2346679999999999999999998754211     1100000 000000  000


Q ss_pred             chHHHHHHHHHHHhhccccccchhhhHHHHHH-HhCCceEEEEEeCCCCH--HHHHHhhcCCCCCCCCcEEEEEeCCc-h
Q 039455           95 LVPLQEQLLSEVLMERNLIIWDVHKGINLIRW-RLCRKRVLVVLDDVDQL--EQLQALAGNHDWFGFGSRIIITTRDE-H  170 (216)
Q Consensus        95 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~-~l~~~~~llvlDd~~~~--~~~~~l~~~~~~~~~~~~il~tsr~~-~  170 (216)
                      +..+        .........+...+...+.. ...++.-++|||+++..  .....++..+..-...+.+|++|.+. .
T Consensus        90 ~~ei--------d~~s~~~v~~ir~l~~~~~~~p~~~~~KVvIIdev~~Lt~~a~naLLk~LEepp~~~~fIl~t~~~~k  161 (576)
T PRK14965         90 VFEI--------DGASNTGVDDIRELRENVKYLPSRSRYKIFIIDEVHMLSTNAFNALLKTLEEPPPHVKFIFATTEPHK  161 (576)
T ss_pred             eeee--------eccCccCHHHHHHHHHHHHhccccCCceEEEEEChhhCCHHHHHHHHHHHHcCCCCeEEEEEeCChhh
Confidence            0000        00000000011111111110 11234568999999865  34555555443323455566655443 3


Q ss_pred             hhhcc-CCcceEEecCCChHHHHHHHhhhhcCCC--CCchhHhhhc
Q 039455          171 VLKGH-GVTNIYKVRGLDYVEALQLFHLKVSKGK--QPTDDRVELS  213 (216)
Q Consensus       171 ~~~~~-~~~~~~~l~~l~~~~~~~ll~~~~~~~~--~~~~~~~~l~  213 (216)
                      +...+ .....+++++++.++....+...+-..+  .+++.+..|+
T Consensus       162 l~~tI~SRc~~~~f~~l~~~~i~~~L~~i~~~egi~i~~~al~~la  207 (576)
T PRK14965        162 VPITILSRCQRFDFRRIPLQKIVDRLRYIADQEGISISDAALALVA  207 (576)
T ss_pred             hhHHHHHhhhhhhcCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHH
Confidence            33332 2346789999999999888876553333  3344444443

>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily

Probab=98.83  E-value=9.3e-08  Score=85.07  Aligned_cols=167  Identities=17%  Similarity=0.154  Sum_probs=95.6

Q ss_pred             ccccccchhHHHHHHHHHhc-----------CCCCeeEEEEEecCCCcHHHHHHHHHHHhcCCCCceEeecccccccccc
Q 039455           25 VDGLVGIASRMEKMNGYLEA-----------GLDDVRFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLANVREVSVTR   93 (216)
Q Consensus        25 ~~~~vgR~~~~~~l~~~l~~-----------~~~~~~~i~I~G~~GiGKTtL~~~~~~~~~~~~~~~~~~~~~~~~~~~~   93 (216)
                      ...+.|.+...+.|...+..           +......+.++||+|+|||++|+.+++.....|   +.+. .       
T Consensus       452 ~~di~g~~~~k~~l~~~v~~~~~~~~~~~~~g~~~~~giLL~GppGtGKT~lakalA~e~~~~f---i~v~-~-------  520 (733)
T TIGR01243       452 WSDIGGLEEVKQELREAVEWPLKHPEIFEKMGIRPPKGVLLFGPPGTGKTLLAKAVATESGANF---IAVR-G-------  520 (733)
T ss_pred             hhhcccHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhcCCCE---EEEe-h-------
Confidence            45577888887777775531           112345689999999999999999998765332   1111 0       


Q ss_pred             CchHHHHHHHHHHHhhccccccchhhhHHHHHHHhCCceEEEEEeCCCCH--------------HHHHHhhcCCCC--CC
Q 039455           94 GLVPLQEQLLSEVLMERNLIIWDVHKGINLIRWRLCRKRVLVVLDDVDQL--------------EQLQALAGNHDW--FG  157 (216)
Q Consensus        94 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~llvlDd~~~~--------------~~~~~l~~~~~~--~~  157 (216)
                            ..++....+      .+.......+...-...+.+|+||+++.+              ..+..++..+..  ..
T Consensus       521 ------~~l~~~~vG------ese~~i~~~f~~A~~~~p~iifiDEid~l~~~r~~~~~~~~~~~~~~~lL~~ldg~~~~  588 (733)
T TIGR01243       521 ------PEILSKWVG------ESEKAIREIFRKARQAAPAIIFFDEIDAIAPARGARFDTSVTDRIVNQLLTEMDGIQEL  588 (733)
T ss_pred             ------HHHhhcccC------cHHHHHHHHHHHHHhcCCEEEEEEChhhhhccCCCCCCccHHHHHHHHHHHHhhcccCC
Confidence                  011111000      01112223334444567899999998643              112333333321  12


Q ss_pred             CCcEEEEEeCCchhhhc--c---CCcceEEecCCChHHHHHHHhhhhcCCC-CCchhHhhhcc
Q 039455          158 FGSRIIITTRDEHVLKG--H---GVTNIYKVRGLDYVEALQLFHLKVSKGK-QPTDDRVELSK  214 (216)
Q Consensus       158 ~~~~il~tsr~~~~~~~--~---~~~~~~~l~~l~~~~~~~ll~~~~~~~~-~~~~~~~~l~~  214 (216)
                      .+..+|.||..++....  .   ..+..+.+++.+.++..++|+.+..... .++-++..|++
T Consensus       589 ~~v~vI~aTn~~~~ld~allRpgRfd~~i~v~~Pd~~~R~~i~~~~~~~~~~~~~~~l~~la~  651 (733)
T TIGR01243       589 SNVVVIAATNRPDILDPALLRPGRFDRLILVPPPDEEARKEIFKIHTRSMPLAEDVDLEELAE  651 (733)
T ss_pred             CCEEEEEeCCChhhCCHhhcCCCccceEEEeCCcCHHHHHHHHHHHhcCCCCCccCCHHHHHH
Confidence            34556677766654322  1   3567899999999999999986654333 22334555553

This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.

>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity

Probab=98.83  E-value=2.2e-08  Score=73.42  Aligned_cols=126  Identities=16%  Similarity=0.144  Sum_probs=71.0

Q ss_pred             CCeeEEEEEecCCCcHHHHHHHHHHHhcCCCCceEeeccccc-------------cccccCchHHHHHHHHHHHhhcccc
Q 039455           47 DDVRFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLANVRE-------------VSVTRGLVPLQEQLLSEVLMERNLI  113 (216)
Q Consensus        47 ~~~~~i~I~G~~GiGKTtL~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~~~~~~~l~~~~~~~~~~~  113 (216)
                      ..+..++|.|++|+|||||++.+++.... ....+++....-             ......+.. ...+...+      .
T Consensus        24 ~~Ge~~~i~G~nGsGKStLl~~l~G~~~~-~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~-~~tv~~~~------~   95 (173)
T cd03230          24 EKGEIYGLLGPNGAGKTTLIKIILGLLKP-DSGEIKVLGKDIKKEPEEVKRRIGYLPEEPSLYE-NLTVRENL------K   95 (173)
T ss_pred             cCCcEEEEECCCCCCHHHHHHHHhCCCCC-CCeEEEECCEEcccchHhhhccEEEEecCCcccc-CCcHHHHh------h
Confidence            34689999999999999999999986543 233333321100             000000000 00000000      0


Q ss_pred             ccchhhhHHHHHHHhCCceEEEEEeCCCC------HHHHHHhhcCCCCCCCCcEEEEEeCCchhhhccCCcceEEe
Q 039455          114 IWDVHKGINLIRWRLCRKRVLVVLDDVDQ------LEQLQALAGNHDWFGFGSRIIITTRDEHVLKGHGVTNIYKV  183 (216)
Q Consensus       114 ~~~~~~~~~~l~~~l~~~~~llvlDd~~~------~~~~~~l~~~~~~~~~~~~il~tsr~~~~~~~~~~~~~~~l  183 (216)
                      .+..+...-.+...+..++-++++|+...      ...+..++..+.  ..+..+|++||+......+ ++..+.+
T Consensus        96 LS~G~~qrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~--~~g~tiii~th~~~~~~~~-~d~i~~l  168 (173)
T cd03230          96 LSGGMKQRLALAQALLHDPELLILDEPTSGLDPESRREFWELLRELK--KEGKTILLSSHILEEAERL-CDRVAIL  168 (173)
T ss_pred             cCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHH--HCCCEEEEECCCHHHHHHh-CCEEEEE
Confidence            22233444568888889999999998732      233444444432  2367899999998776654 4444444

In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth

Probab=98.82  E-value=3e-08  Score=70.52  Aligned_cols=111  Identities=21%  Similarity=0.235  Sum_probs=68.8

Q ss_pred             CCeeEEEEEecCCCcHHHHHHHHHHHhcCCCCceEeeccccccccccCchHHHHHHHHHHHhhccccccchhhhHHHHHH
Q 039455           47 DDVRFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLANVREVSVTRGLVPLQEQLLSEVLMERNLIIWDVHKGINLIRW  126 (216)
Q Consensus        47 ~~~~~i~I~G~~GiGKTtL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~  126 (216)
                      ..+..++|.|++|+|||||++.+++..... ...+++.........                   .+.+..+...-.+..
T Consensus        24 ~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~-~G~i~~~~~~~i~~~-------------------~~lS~G~~~rv~lar   83 (144)
T cd03221          24 NPGDRIGLVGRNGAGKSTLLKLIAGELEPD-EGIVTWGSTVKIGYF-------------------EQLSGGEKMRLALAK   83 (144)
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHcCCCCCC-ceEEEECCeEEEEEE-------------------ccCCHHHHHHHHHHH
Confidence            456899999999999999999999865432 344444311000000                   002233344556788


Q ss_pred             HhCCceEEEEEeCCC------CHHHHHHhhcCCCCCCCCcEEEEEeCCchhhhccCCcceEEe
Q 039455          127 RLCRKRVLVVLDDVD------QLEQLQALAGNHDWFGFGSRIIITTRDEHVLKGHGVTNIYKV  183 (216)
Q Consensus       127 ~l~~~~~llvlDd~~------~~~~~~~l~~~~~~~~~~~~il~tsr~~~~~~~~~~~~~~~l  183 (216)
                      .+..++-++++|+..      ....+..++..+     +..+|++||+.+....+ ++..+.+
T Consensus        84 al~~~p~illlDEP~~~LD~~~~~~l~~~l~~~-----~~til~~th~~~~~~~~-~d~v~~l  140 (144)
T cd03221          84 LLLENPNLLLLDEPTNHLDLESIEALEEALKEY-----PGTVILVSHDRYFLDQV-ATKIIEL  140 (144)
T ss_pred             HHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHc-----CCEEEEEECCHHHHHHh-CCEEEEE
Confidence            888899999999873      223344444332     25799999998776554 4444444

EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.

>COG4555 NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism]

Probab=98.82  E-value=5.5e-08  Score=71.40  Aligned_cols=58  Identities=12%  Similarity=0.176  Sum_probs=40.4

Q ss_pred             HHHHHHHhCCceEEEEEeCCC------CHHHHHHhhcCCCCCCCCcEEEEEeCCchhhhccCCcceE
Q 039455          121 INLIRWRLCRKRVLVVLDDVD------QLEQLQALAGNHDWFGFGSRIIITTRDEHVLKGHGVTNIY  181 (216)
Q Consensus       121 ~~~l~~~l~~~~~llvlDd~~------~~~~~~~l~~~~~~~~~~~~il~tsr~~~~~~~~~~~~~~  181 (216)
                      ...+.+.+-++|-++|||+.-      ....+.++...+.  ..+-.+|++||..+....+ |+.++
T Consensus       141 kV~iARAlvh~P~i~vlDEP~sGLDi~~~r~~~dfi~q~k--~egr~viFSSH~m~Eveal-CDrvi  204 (245)
T COG4555         141 KVAIARALVHDPSILVLDEPTSGLDIRTRRKFHDFIKQLK--NEGRAVIFSSHIMQEVEAL-CDRVI  204 (245)
T ss_pred             HHHHHHHHhcCCCeEEEcCCCCCccHHHHHHHHHHHHHhh--cCCcEEEEecccHHHHHHh-hheEE
Confidence            335788888999999999763      2344566666655  4577899999998766654 44433

>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion

Probab=98.82  E-value=3.1e-08  Score=72.67  Aligned_cols=129  Identities=17%  Similarity=0.158  Sum_probs=68.8

Q ss_pred             CCeeEEEEEecCCCcHHHHHHHHHHHhcCCCCceEeeccccccccc-cCchHHHHHHHHHHHhhc---c---ccccchhh
Q 039455           47 DDVRFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLANVREVSVT-RGLVPLQEQLLSEVLMER---N---LIIWDVHK  119 (216)
Q Consensus        47 ~~~~~i~I~G~~GiGKTtL~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~---~---~~~~~~~~  119 (216)
                      ..+..++|.||+|+|||||++.+...    ...+.|.......... ..+. ...+++..+....   .   ...+..+.
T Consensus        19 ~~G~~~~l~G~nG~GKSTLl~~il~~----~G~v~~~~~~~~~~~~~~~~~-~q~~~l~~~~L~~~~~~~~~~~LSgGq~   93 (176)
T cd03238          19 PLNVLVVVTGVSGSGKSTLVNEGLYA----SGKARLISFLPKFSRNKLIFI-DQLQFLIDVGLGYLTLGQKLSTLSGGEL   93 (176)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhhc----CCcEEECCcccccccccEEEE-hHHHHHHHcCCCccccCCCcCcCCHHHH
Confidence            34679999999999999999988631    1112221110000000 0000 0122333322111   0   11122233


Q ss_pred             hHHHHHHHhCCc--eEEEEEeCCCC------HHHHHHhhcCCCCCCCCcEEEEEeCCchhhhccCCcceEEec
Q 039455          120 GINLIRWRLCRK--RVLVVLDDVDQ------LEQLQALAGNHDWFGFGSRIIITTRDEHVLKGHGVTNIYKVR  184 (216)
Q Consensus       120 ~~~~l~~~l~~~--~~llvlDd~~~------~~~~~~l~~~~~~~~~~~~il~tsr~~~~~~~~~~~~~~~l~  184 (216)
                      ..-.+...+..+  +-++++|+...      .+.+..++..+.  ..+..||++||+.+....  ++..+.+.
T Consensus        94 qrl~laral~~~~~p~llLlDEPt~~LD~~~~~~l~~~l~~~~--~~g~tvIivSH~~~~~~~--~d~i~~l~  162 (176)
T cd03238          94 QRVKLASELFSEPPGTLFILDEPSTGLHQQDINQLLEVIKGLI--DLGNTVILIEHNLDVLSS--ADWIIDFG  162 (176)
T ss_pred             HHHHHHHHHhhCCCCCEEEEeCCcccCCHHHHHHHHHHHHHHH--hCCCEEEEEeCCHHHHHh--CCEEEEEC
Confidence            444577777788  89999998732      233333333332  246789999999887643  56666654

Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.

>COG0396 sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]

Probab=98.82  E-value=1e-08  Score=76.60  Aligned_cols=62  Identities=19%  Similarity=0.100  Sum_probs=44.3

Q ss_pred             hhhhHHHHHHHhCCceEEEEEeCCCCH------HHHHHhhcCCCCCCCCcEEEEEeCCchhhhccCCcce
Q 039455          117 VHKGINLIRWRLCRKRVLVVLDDVDQL------EQLQALAGNHDWFGFGSRIIITTRDEHVLKGHGVTNI  180 (216)
Q Consensus       117 ~~~~~~~l~~~l~~~~~llvlDd~~~~------~~~~~l~~~~~~~~~~~~il~tsr~~~~~~~~~~~~~  180 (216)
                      .+.....+.+++.-+|-+.|||+.|+-      +.+......+.  ..+..++++||...++....++.+
T Consensus       148 GEkKR~EilQ~~~lePkl~ILDE~DSGLDIdalk~V~~~i~~lr--~~~~~~liITHy~rll~~i~pD~v  215 (251)
T COG0396         148 GEKKRNEILQLLLLEPKLAILDEPDSGLDIDALKIVAEGINALR--EEGRGVLIITHYQRLLDYIKPDKV  215 (251)
T ss_pred             chHHHHHHHHHHhcCCCEEEecCCCcCccHHHHHHHHHHHHHHh--cCCCeEEEEecHHHHHhhcCCCEE
Confidence            345566788888889999999988653      33444444444  567889999999998888754433

>PRK14948 DNA polymerase III subunits gamma and tau; Provisional

Probab=98.81  E-value=1e-07  Score=82.64  Aligned_cols=170  Identities=18%  Similarity=0.137  Sum_probs=93.0

Q ss_pred             CcccccccchhHHHHHHHHHhcCCCCeeEEEEEecCCCcHHHHHHHHHHHhcCCCCce-EeeccccccccccCchHHHHH
Q 039455           23 SAVDGLVGIASRMEKMNGYLEAGLDDVRFIGICGMGGIGKTTLAKVLYNTLKDQFEAS-SFLANVREVSVTRGLVPLQEQ  101 (216)
Q Consensus        23 ~~~~~~vgR~~~~~~l~~~l~~~~~~~~~i~I~G~~GiGKTtL~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~  101 (216)
                      ..-..++|.+...+.|..++..+ .-...+.++|+.|+||||+|+.++..+....... ..-. +       .....+..
T Consensus        13 ~~f~~liGq~~i~~~L~~~l~~~-rl~~a~Lf~Gp~G~GKttlA~~lAk~L~c~~~~~~~~~~-C-------g~C~~C~~   83 (620)
T PRK14948         13 QRFDELVGQEAIATTLKNALISN-RIAPAYLFTGPRGTGKTSSARILAKSLNCLNSDKPTPEP-C-------GKCELCRA   83 (620)
T ss_pred             CcHhhccChHHHHHHHHHHHHcC-CCCceEEEECCCCCChHHHHHHHHHHhcCCCcCCCCCCC-C-------cccHHHHH
Confidence            44567899999999999988854 2346889999999999999999998764321100 0000 0       00111111


Q ss_pred             HHHHHHhh----ccccccchhhhHHHHHH----HhCCceEEEEEeCCCCH--HHHHHhhcCCCCCCCCcEEEEEeCCc-h
Q 039455          102 LLSEVLME----RNLIIWDVHKGINLIRW----RLCRKRVLVVLDDVDQL--EQLQALAGNHDWFGFGSRIIITTRDE-H  170 (216)
Q Consensus       102 l~~~~~~~----~~~~~~~~~~~~~~l~~----~l~~~~~llvlDd~~~~--~~~~~l~~~~~~~~~~~~il~tsr~~-~  170 (216)
                      +.......    ........+...+.+..    ...++.-++|||+++.+  +....++..+..-.....+|++|.+. .
T Consensus        84 i~~g~h~D~~ei~~~~~~~vd~IReii~~a~~~p~~~~~KViIIDEad~Lt~~a~naLLK~LEePp~~tvfIL~t~~~~~  163 (620)
T PRK14948         84 IAAGNALDVIEIDAASNTGVDNIRELIERAQFAPVQARWKVYVIDECHMLSTAAFNALLKTLEEPPPRVVFVLATTDPQR  163 (620)
T ss_pred             HhcCCCccEEEEeccccCCHHHHHHHHHHHhhChhcCCceEEEEECccccCHHHHHHHHHHHhcCCcCeEEEEEeCChhh
Confidence            11100000    00000111111111111    11244569999999865  44566665554323445555555543 2


Q ss_pred             hhhcc-CCcceEEecCCChHHHHHHHhhhhcC
Q 039455          171 VLKGH-GVTNIYKVRGLDYVEALQLFHLKVSK  201 (216)
Q Consensus       171 ~~~~~-~~~~~~~l~~l~~~~~~~ll~~~~~~  201 (216)
                      +...+ .....+++.+++.++....+...+..
T Consensus       164 llpTIrSRc~~~~f~~l~~~ei~~~L~~ia~k  195 (620)
T PRK14948        164 VLPTIISRCQRFDFRRIPLEAMVQHLSEIAEK  195 (620)
T ss_pred             hhHHHHhheeEEEecCCCHHHHHHHHHHHHHH
Confidence            22222 23477899999999888888765533

>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=98.81  E-value=1.5e-07  Score=79.30  Aligned_cols=167  Identities=17%  Similarity=0.150  Sum_probs=99.1

Q ss_pred             ccccccchhHHHHHHHHHhc----------CCCCeeEEEEEecCCCcHHHHHHHHHHHhcCCCCceEeeccccccccccC
Q 039455           25 VDGLVGIASRMEKMNGYLEA----------GLDDVRFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLANVREVSVTRG   94 (216)
Q Consensus        25 ~~~~vgR~~~~~~l~~~l~~----------~~~~~~~i~I~G~~GiGKTtL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   94 (216)
                      -..+=|.++.+++|..++..          +-.-.+-+.+|||+|+|||.||+.+++++.-.     ++..        +
T Consensus       189 f~diGG~d~~~~el~~li~~i~~Pe~~~~lGv~PprGvLlHGPPGCGKT~lA~AiAgel~vP-----f~~i--------s  255 (802)
T KOG0733|consen  189 FSDIGGLDKTLAELCELIIHIKHPEVFSSLGVRPPRGVLLHGPPGCGKTSLANAIAGELGVP-----FLSI--------S  255 (802)
T ss_pred             hhhccChHHHHHHHHHHHHHhcCchhHhhcCCCCCCceeeeCCCCccHHHHHHHHhhhcCCc-----eEee--------c
Confidence            45678999999998876531          11235789999999999999999999876422     2220        1


Q ss_pred             chHHHHHHHHHHHhhccccccchhhhHHHHHHHhCCceEEEEEeCCCCH--------H-----HHHHhhcCC---CCCC-
Q 039455           95 LVPLQEQLLSEVLMERNLIIWDVHKGINLIRWRLCRKRVLVVLDDVDQL--------E-----QLQALAGNH---DWFG-  157 (216)
Q Consensus        95 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~llvlDd~~~~--------~-----~~~~l~~~~---~~~~-  157 (216)
                      .    ..+...+.      ..+-....+.+.++....+++++|||+|.+        .     -+.+++..+   .... 
T Consensus       256 A----peivSGvS------GESEkkiRelF~~A~~~aPcivFiDeIDAI~pkRe~aqreMErRiVaQLlt~mD~l~~~~~  325 (802)
T KOG0733|consen  256 A----PEIVSGVS------GESEKKIRELFDQAKSNAPCIVFIDEIDAITPKREEAQREMERRIVAQLLTSMDELSNEKT  325 (802)
T ss_pred             c----hhhhcccC------cccHHHHHHHHHHHhccCCeEEEeecccccccchhhHHHHHHHHHHHHHHHhhhccccccc
Confidence            1    11222111      112334455566666778999999999744        1     133444333   2211 


Q ss_pred             CCcEE--EE-EeCCchhhhc---c-CCcceEEecCCChHHHHHHHhhhhcCCC-CCchhHhhhcc
Q 039455          158 FGSRI--II-TTRDEHVLKG---H-GVTNIYKVRGLDYVEALQLFHLKVSKGK-QPTDDRVELSK  214 (216)
Q Consensus       158 ~~~~i--l~-tsr~~~~~~~---~-~~~~~~~l~~l~~~~~~~ll~~~~~~~~-~~~~~~~~l~~  214 (216)
                      .|..+  |- |+|...+-..   . ..+.-|.+.--++.+..++|+..+-+-. ..+=+++.||+
T Consensus       326 ~g~~VlVIgATnRPDslDpaLRRaGRFdrEI~l~vP~e~aR~~IL~~~~~~lrl~g~~d~~qlA~  390 (802)
T KOG0733|consen  326 KGDPVLVIGATNRPDSLDPALRRAGRFDREICLGVPSETAREEILRIICRGLRLSGDFDFKQLAK  390 (802)
T ss_pred             CCCCeEEEecCCCCcccCHHHhccccccceeeecCCchHHHHHHHHHHHhhCCCCCCcCHHHHHh
Confidence            12223  32 4444333222   2 2467899999999999999987775444 22335555554

>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]

Probab=98.79  E-value=6.5e-08  Score=82.83  Aligned_cols=160  Identities=19%  Similarity=0.183  Sum_probs=89.6

Q ss_pred             ccccccchhHHHHHHHHHh----cCCCCeeEEEEEecCCCcHHHHHHHHHHHhcCCCCceEeeccccccccccCchHHHH
Q 039455           25 VDGLVGIASRMEKMNGYLE----AGLDDVRFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLANVREVSVTRGLVPLQE  100 (216)
Q Consensus        25 ~~~~vgR~~~~~~l~~~l~----~~~~~~~~i~I~G~~GiGKTtL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  100 (216)
                      ..+.+|-++..++|.++|.    ...-+++++|++||+|+|||+|++.++..+...|-...... +++..+-++-...  
T Consensus       322 d~dHYGLekVKeRIlEyLAV~~l~~~~kGpILcLVGPPGVGKTSLgkSIA~al~RkfvR~sLGG-vrDEAEIRGHRRT--  398 (782)
T COG0466         322 DKDHYGLEKVKERILEYLAVQKLTKKLKGPILCLVGPPGVGKTSLGKSIAKALGRKFVRISLGG-VRDEAEIRGHRRT--  398 (782)
T ss_pred             cccccCchhHHHHHHHHHHHHHHhccCCCcEEEEECCCCCCchhHHHHHHHHhCCCEEEEecCc-cccHHHhcccccc--
Confidence            3467999999999999876    22456799999999999999999999998876653332222 2221111111000  


Q ss_pred             HHHHHHHhhccccccchhhhHHHHHHHhCCceEEEEEeCCCCH------HHHHHhh------------cCCCCCC---CC
Q 039455          101 QLLSEVLMERNLIIWDVHKGINLIRWRLCRKRVLVVLDDVDQL------EQLQALA------------GNHDWFG---FG  159 (216)
Q Consensus       101 ~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~llvlDd~~~~------~~~~~l~------------~~~~~~~---~~  159 (216)
                                 +-..=....++.+...-.. .-+++||++|..      +-...++            .+|....   ..
T Consensus       399 -----------YIGamPGrIiQ~mkka~~~-NPv~LLDEIDKm~ss~rGDPaSALLEVLDPEQN~~F~DhYLev~yDLS~  466 (782)
T COG0466         399 -----------YIGAMPGKIIQGMKKAGVK-NPVFLLDEIDKMGSSFRGDPASALLEVLDPEQNNTFSDHYLEVPYDLSK  466 (782)
T ss_pred             -----------ccccCChHHHHHHHHhCCc-CCeEEeechhhccCCCCCChHHHHHhhcCHhhcCchhhccccCccchhh
Confidence                       0000012223333333222 337788988633      1112222            2221111   12


Q ss_pred             cEEEEEeCCch-h-hhccCCcceEEecCCChHHHHHHHhhhh
Q 039455          160 SRIIITTRDEH-V-LKGHGVTNIYKVRGLDYVEALQLFHLKV  199 (216)
Q Consensus       160 ~~il~tsr~~~-~-~~~~~~~~~~~l~~l~~~~~~~ll~~~~  199 (216)
                      ..+|.|+...+ + ...+...+++++...+.+|=.++-+++.
T Consensus       467 VmFiaTANsl~tIP~PLlDRMEiI~lsgYt~~EKl~IAk~~L  508 (782)
T COG0466         467 VMFIATANSLDTIPAPLLDRMEVIRLSGYTEDEKLEIAKRHL  508 (782)
T ss_pred             eEEEeecCccccCChHHhcceeeeeecCCChHHHHHHHHHhc
Confidence            33444444433 1 2223456899999999998888877765

>KOG2227 consensus Pre-initiation complex, subunit CDC6, AAA+ superfamily ATPase [Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]

Probab=98.79  E-value=4e-07  Score=74.63  Aligned_cols=186  Identities=16%  Similarity=0.184  Sum_probs=110.4

Q ss_pred             HHHHHhhcCCCCCCcccccccchhHHHHHHHHHhcC--CCCeeEEEEEecCCCcHHHHHHHHHHHhcCCCCc--eEeecc
Q 039455           10 VKEISKRLNPTFPSAVDGLVGIASRMEKMNGYLEAG--LDDVRFIGICGMGGIGKTTLAKVLYNTLKDQFEA--SSFLAN   85 (216)
Q Consensus        10 ~~~~~~~~~~~~~~~~~~~vgR~~~~~~l~~~l~~~--~~~~~~i~I~G~~GiGKTtL~~~~~~~~~~~~~~--~~~~~~   85 (216)
                      ..+....+..+.  .+..++||+.|++.+..|+...  ....+.+.|.|-+|.|||.+...++......+..  .+++.+
T Consensus       136 ~~~~~~~l~~t~--~p~~l~gRe~e~~~v~~F~~~hle~~t~gSlYVsG~PGtgkt~~l~rvl~~~~~~~~~~~~v~inc  213 (529)
T KOG2227|consen  136 SEQRSESLLNTA--PPGTLKGRELEMDIVREFFSLHLELNTSGSLYVSGQPGTGKTALLSRVLDSLSKSSKSPVTVYINC  213 (529)
T ss_pred             HHHHHHHHHhcC--CCCCccchHHHHHHHHHHHHhhhhcccCcceEeeCCCCcchHHHHHHHHHhhhhhcccceeEEEee
Confidence            333344444443  3556899999999999998754  5667899999999999999999888766655443  355543


Q ss_pred             ccccccccCchHHHHHHHHHHHhhccccccchhhhHHHHHHHhC-C-ceEEEEEeCCCCHHHH--HHhhcCCCCC-CCCc
Q 039455           86 VREVSVTRGLVPLQEQLLSEVLMERNLIIWDVHKGINLIRWRLC-R-KRVLVVLDDVDQLEQL--QALAGNHDWF-GFGS  160 (216)
Q Consensus        86 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~-~-~~~llvlDd~~~~~~~--~~l~~~~~~~-~~~~  160 (216)
                      .+    ......++..++..+......+... ......+..... . ..+++|+|+.|.+..-  ..+...|.+- -+++
T Consensus       214 ~s----l~~~~aiF~kI~~~~~q~~~s~~~~-~~~~~~~~~h~~q~k~~~llVlDEmD~L~tr~~~vLy~lFewp~lp~s  288 (529)
T KOG2227|consen  214 TS----LTEASAIFKKIFSSLLQDLVSPGTG-MQHLEKFEKHTKQSKFMLLLVLDEMDHLITRSQTVLYTLFEWPKLPNS  288 (529)
T ss_pred             cc----ccchHHHHHHHHHHHHHHhcCCchh-HHHHHHHHHHHhcccceEEEEechhhHHhhcccceeeeehhcccCCcc
Confidence            32    2344455666666654333333333 222333333333 3 4799999999865321  1111111110 1334


Q ss_pred             EEEEEeCCc------hhhhccC-----CcceEEecCCChHHHHHHHhhhhcCC
Q 039455          161 RIIITTRDE------HVLKGHG-----VTNIYKVRGLDYVEALQLFHLKVSKG  202 (216)
Q Consensus       161 ~il~tsr~~------~~~~~~~-----~~~~~~l~~l~~~~~~~ll~~~~~~~  202 (216)
                      ++++..-..      .++..++     ....+.++|.+.++..++|....-..
T Consensus       289 r~iLiGiANslDlTdR~LprL~~~~~~~P~~l~F~PYTk~qI~~Il~~rl~~~  341 (529)
T KOG2227|consen  289 RIILIGIANSLDLTDRFLPRLNLDLTIKPKLLVFPPYTKDQIVEILQQRLSEE  341 (529)
T ss_pred             eeeeeeehhhhhHHHHHhhhhhhccCCCCceeeecCCCHHHHHHHHHHHHhcc
Confidence            444333221      1122221     35789999999999999999876443

>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]

Probab=98.78  E-value=4.9e-08  Score=73.63  Aligned_cols=138  Identities=18%  Similarity=0.170  Sum_probs=73.4

Q ss_pred             HHHHHHhcCCCCeeEEEEEecCCCcHHHHHHHHHHHhcCCCCceEeec---------------------c-ccccccccC
Q 039455           37 KMNGYLEAGLDDVRFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLA---------------------N-VREVSVTRG   94 (216)
Q Consensus        37 ~l~~~l~~~~~~~~~i~I~G~~GiGKTtL~~~~~~~~~~~~~~~~~~~---------------------~-~~~~~~~~~   94 (216)
                      .+.+.+...-..+.+++|+|++|+|||||++.+++..+.....+.|-.                     + .+++.+...
T Consensus        21 ~~l~~VS~~i~~Ge~lgivGeSGsGKSTL~r~l~Gl~~p~~G~I~~~G~~~~~~~~~~~~~~~VQmVFQDp~~SLnP~~t  100 (252)
T COG1124          21 HALNNVSLEIERGETLGIVGESGSGKSTLARLLAGLEKPSSGSILLDGKPLAPKKRAKAFYRPVQMVFQDPYSSLNPRRT  100 (252)
T ss_pred             hhhcceeEEecCCCEEEEEcCCCCCHHHHHHHHhcccCCCCceEEECCcccCccccchhhccceeEEecCCccccCcchh
Confidence            333333333456789999999999999999999985433221111110                     0 011111111


Q ss_pred             chHHH----------------HHHHHHHH------hhccccccchhhhHHHHHHHhCCceEEEEEeCCCCH-H-----HH
Q 039455           95 LVPLQ----------------EQLLSEVL------MERNLIIWDVHKGINLIRWRLCRKRVLVVLDDVDQL-E-----QL  146 (216)
Q Consensus        95 ~~~~~----------------~~l~~~~~------~~~~~~~~~~~~~~~~l~~~l~~~~~llvlDd~~~~-~-----~~  146 (216)
                      ...++                .+++..+.      ...+.+.+..+...-.+.+++.-++-+||+|+.-+. +     ++
T Consensus       101 v~~~l~Epl~~~~~~~~~~~i~~~L~~VgL~~~~l~R~P~eLSGGQ~QRiaIARAL~~~PklLIlDEptSaLD~siQa~I  180 (252)
T COG1124         101 VGRILSEPLRPHGLSKSQQRIAELLDQVGLPPSFLDRRPHELSGGQRQRIAIARALIPEPKLLILDEPTSALDVSVQAQI  180 (252)
T ss_pred             HHHHHhhhhccCCccHHHHHHHHHHHHcCCCHHHHhcCchhcChhHHHHHHHHHHhccCCCEEEecCchhhhcHHHHHHH
Confidence            11111                11222111      111222334445556788999999999999988432 1     12


Q ss_pred             HHhhcCCCCCCCCcEEEEEeCCchhhhcc
Q 039455          147 QALAGNHDWFGFGSRIIITTRDEHVLKGH  175 (216)
Q Consensus       147 ~~l~~~~~~~~~~~~il~tsr~~~~~~~~  175 (216)
                      -+++..+. ...+..+|+.||+..++..+
T Consensus       181 lnlL~~l~-~~~~lt~l~IsHdl~~v~~~  208 (252)
T COG1124         181 LNLLLELK-KERGLTYLFISHDLALVEHM  208 (252)
T ss_pred             HHHHHHHH-HhcCceEEEEeCcHHHHHHH
Confidence            22221111 03467899999998765554

>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain

Probab=98.77  E-value=3.8e-08  Score=72.23  Aligned_cols=130  Identities=16%  Similarity=0.198  Sum_probs=71.5

Q ss_pred             CCeeEEEEEecCCCcHHHHHHHHHHHhcCCCCceEeeccccccccccCchHHHHHHHHHHHhhcc-cc-------ccchh
Q 039455           47 DDVRFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLANVREVSVTRGLVPLQEQLLSEVLMERN-LI-------IWDVH  118 (216)
Q Consensus        47 ~~~~~i~I~G~~GiGKTtL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~-------~~~~~  118 (216)
                      ..+..++|.|++|+|||||++.+++..... ...+++... ... ..........+. .+..... ..       .+..+
T Consensus        26 ~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~-~G~i~~~g~-~~~-~~~~~~~~~~i~-~~~q~~~~~~~tv~~~lLS~G~  101 (173)
T cd03246          26 EPGESLAIIGPSGSGKSTLARLILGLLRPT-SGRVRLDGA-DIS-QWDPNELGDHVG-YLPQDDELFSGSIAENILSGGQ  101 (173)
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHHhccCCC-CCeEEECCE-Ecc-cCCHHHHHhheE-EECCCCccccCcHHHHCcCHHH
Confidence            345799999999999999999999865433 232332210 000 000000000000 0000000 00       22233


Q ss_pred             hhHHHHHHHhCCceEEEEEeCCC------CHHHHHHhhcCCCCCCCCcEEEEEeCCchhhhccCCcceEEec
Q 039455          119 KGINLIRWRLCRKRVLVVLDDVD------QLEQLQALAGNHDWFGFGSRIIITTRDEHVLKGHGVTNIYKVR  184 (216)
Q Consensus       119 ~~~~~l~~~l~~~~~llvlDd~~------~~~~~~~l~~~~~~~~~~~~il~tsr~~~~~~~~~~~~~~~l~  184 (216)
                      ...-.+...+..++-++++|+..      ....+..++..+.  ..+..+|++||+.+... . +++.+.+.
T Consensus       102 ~qrv~la~al~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~--~~~~tii~~sh~~~~~~-~-~d~v~~l~  169 (173)
T cd03246         102 RQRLGLARALYGNPRILVLDEPNSHLDVEGERALNQAIAALK--AAGATRIVIAHRPETLA-S-ADRILVLE  169 (173)
T ss_pred             HHHHHHHHHHhcCCCEEEEECCccccCHHHHHHHHHHHHHHH--hCCCEEEEEeCCHHHHH-h-CCEEEEEE
Confidence            44556788888899999999873      2233444444433  24678999999987764 3 56665553

They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra

>PRK14971 DNA polymerase III subunits gamma and tau; Provisional

Probab=98.77  E-value=4e-07  Score=79.06  Aligned_cols=173  Identities=18%  Similarity=0.181  Sum_probs=93.9

Q ss_pred             CCcccccccchhHHHHHHHHHhcCCCCeeEEEEEecCCCcHHHHHHHHHHHhcCCCCceEeeccccccccccCchHHHHH
Q 039455           22 PSAVDGLVGIASRMEKMNGYLEAGLDDVRFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLANVREVSVTRGLVPLQEQ  101 (216)
Q Consensus        22 ~~~~~~~vgR~~~~~~l~~~l~~~~~~~~~i~I~G~~GiGKTtL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  101 (216)
                      |..-++++|.++..+.|..++..+ .-...+.++|+.|+||||+|+.++..+....+....-. ++.+       ..+..
T Consensus        13 P~~f~~viGq~~~~~~L~~~i~~~-~l~hayLf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~-Cg~C-------~sC~~   83 (614)
T PRK14971         13 PSTFESVVGQEALTTTLKNAIATN-KLAHAYLFCGPRGVGKTTCARIFAKTINCQNLTADGEA-CNEC-------ESCVA   83 (614)
T ss_pred             CCCHHHhcCcHHHHHHHHHHHHcC-CCCeeEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCC-CCcc-------hHHHH
Confidence            345667999999999999988754 23466899999999999999999987642111000000 0000       00000


Q ss_pred             HHHH----HHhhccccccchhhhHHHHHH----HhCCceEEEEEeCCCCH--HHHHHhhcCCCCCCCCcEEEEEeCC-ch
Q 039455          102 LLSE----VLMERNLIIWDVHKGINLIRW----RLCRKRVLVVLDDVDQL--EQLQALAGNHDWFGFGSRIIITTRD-EH  170 (216)
Q Consensus       102 l~~~----~~~~~~~~~~~~~~~~~~l~~----~l~~~~~llvlDd~~~~--~~~~~l~~~~~~~~~~~~il~tsr~-~~  170 (216)
                      +-..    +...........+.....+..    .+.++.-++|||+++..  +....++..+..-...+.+|++|.. ..
T Consensus        84 ~~~~~~~n~~~ld~~~~~~vd~Ir~li~~~~~~P~~~~~KVvIIdea~~Ls~~a~naLLK~LEepp~~tifIL~tt~~~k  163 (614)
T PRK14971         84 FNEQRSYNIHELDAASNNSVDDIRNLIEQVRIPPQIGKYKIYIIDEVHMLSQAAFNAFLKTLEEPPSYAIFILATTEKHK  163 (614)
T ss_pred             HhcCCCCceEEecccccCCHHHHHHHHHHHhhCcccCCcEEEEEECcccCCHHHHHHHHHHHhCCCCCeEEEEEeCCchh
Confidence            0000    000000000001111111111    12235568999999755  3455555544432345555555543 33


Q ss_pred             hhhcc-CCcceEEecCCChHHHHHHHhhhhcCCC
Q 039455          171 VLKGH-GVTNIYKVRGLDYVEALQLFHLKVSKGK  203 (216)
Q Consensus       171 ~~~~~-~~~~~~~l~~l~~~~~~~ll~~~~~~~~  203 (216)
                      +...+ .....+++++++.++....+.+.+-..+
T Consensus       164 Il~tI~SRc~iv~f~~ls~~ei~~~L~~ia~~eg  197 (614)
T PRK14971        164 ILPTILSRCQIFDFNRIQVADIVNHLQYVASKEG  197 (614)
T ss_pred             chHHHHhhhheeecCCCCHHHHHHHHHHHHHHcC
Confidence            33332 2347799999999999999987654433

>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export

Probab=98.77  E-value=5.7e-08  Score=71.13  Aligned_cols=128  Identities=18%  Similarity=0.238  Sum_probs=71.5

Q ss_pred             CCeeEEEEEecCCCcHHHHHHHHHHHhcCCCCceEeeccccccccccCchHHHH---------HHHHHHHhhccccccch
Q 039455           47 DDVRFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLANVREVSVTRGLVPLQE---------QLLSEVLMERNLIIWDV  117 (216)
Q Consensus        47 ~~~~~i~I~G~~GiGKTtL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~l~~~~~~~~~~~~~~~  117 (216)
                      ..+..++|.|++|+|||||++.+++..... ...+++... .... ........         .++. .....+. .+..
T Consensus        26 ~~G~~~~l~G~nGsGKstLl~~i~G~~~~~-~G~i~~~g~-~~~~-~~~~~~~~~i~~~~~~~~~~~-~t~~e~l-LS~G  100 (171)
T cd03228          26 KPGEKVAIVGPSGSGKSTLLKLLLRLYDPT-SGEILIDGV-DLRD-LDLESLRKNIAYVPQDPFLFS-GTIRENI-LSGG  100 (171)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHHcCCCCC-CCEEEECCE-Ehhh-cCHHHHHhhEEEEcCCchhcc-chHHHHh-hCHH
Confidence            456899999999999999999999876533 333333211 0000 00000000         0000 0000000 2223


Q ss_pred             hhhHHHHHHHhCCceEEEEEeCCC------CHHHHHHhhcCCCCCCCCcEEEEEeCCchhhhccCCcceEEec
Q 039455          118 HKGINLIRWRLCRKRVLVVLDDVD------QLEQLQALAGNHDWFGFGSRIIITTRDEHVLKGHGVTNIYKVR  184 (216)
Q Consensus       118 ~~~~~~l~~~l~~~~~llvlDd~~------~~~~~~~l~~~~~~~~~~~~il~tsr~~~~~~~~~~~~~~~l~  184 (216)
                      +...-.+...+..++-++++|+..      ..+.+..++..+.   .+..+|++||+.+....  ++..+.+.
T Consensus       101 ~~~rl~la~al~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~---~~~tii~~sh~~~~~~~--~d~~~~l~  168 (171)
T cd03228         101 QRQRIAIARALLRDPPILILDEATSALDPETEALILEALRALA---KGKTVIVIAHRLSTIRD--ADRIIVLD  168 (171)
T ss_pred             HHHHHHHHHHHhcCCCEEEEECCCcCCCHHHHHHHHHHHHHhc---CCCEEEEEecCHHHHHh--CCEEEEEc
Confidence            334445788888899999999873      2244445554443   24789999999887654  55655553

They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily

Probab=98.77  E-value=2e-07  Score=82.97  Aligned_cols=154  Identities=18%  Similarity=0.213  Sum_probs=86.6

Q ss_pred             cccccccchhHHHHHHHHHhcC-----------CCCeeEEEEEecCCCcHHHHHHHHHHHhcCCCCceEeeccccccccc
Q 039455           24 AVDGLVGIASRMEKMNGYLEAG-----------LDDVRFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLANVREVSVT   92 (216)
Q Consensus        24 ~~~~~vgR~~~~~~l~~~l~~~-----------~~~~~~i~I~G~~GiGKTtL~~~~~~~~~~~~~~~~~~~~~~~~~~~   92 (216)
                      ..+.+.|.+..++.+.+++...           -..+..++|+||+|+|||+|++.+++.....+   +.+. ...    
T Consensus       176 ~~~di~G~~~~~~~l~~~i~~~~~~~~~~~~~gi~~~~giLL~GppGtGKT~laraia~~~~~~~---i~i~-~~~----  247 (733)
T TIGR01243       176 TYEDIGGLKEAKEKIREMVELPMKHPELFEHLGIEPPKGVLLYGPPGTGKTLLAKAVANEAGAYF---ISIN-GPE----  247 (733)
T ss_pred             CHHHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCceEEEECCCCCChHHHHHHHHHHhCCeE---EEEe-cHH----
Confidence            3456889999999998876421           12346799999999999999999998764322   1111 100    


Q ss_pred             cCchHHHHHHHHHHHhhccccccchhhhHHHHHHHhCCceEEEEEeCCCCHH-------------HHHHhhcCCCCC-CC
Q 039455           93 RGLVPLQEQLLSEVLMERNLIIWDVHKGINLIRWRLCRKRVLVVLDDVDQLE-------------QLQALAGNHDWF-GF  158 (216)
Q Consensus        93 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~llvlDd~~~~~-------------~~~~l~~~~~~~-~~  158 (216)
                               +....      ...........+.......+.+|+|||++...             ....++..+... ..
T Consensus       248 ---------i~~~~------~g~~~~~l~~lf~~a~~~~p~il~iDEid~l~~~r~~~~~~~~~~~~~~Ll~~ld~l~~~  312 (733)
T TIGR01243       248 ---------IMSKY------YGESEERLREIFKEAEENAPSIIFIDEIDAIAPKREEVTGEVEKRVVAQLLTLMDGLKGR  312 (733)
T ss_pred             ---------Hhccc------ccHHHHHHHHHHHHHHhcCCcEEEeehhhhhcccccCCcchHHHHHHHHHHHHhhccccC
Confidence                     00000      00011122223333445567899999986431             122233222111 22


Q ss_pred             CcEEEE-EeCCchhhh-cc----CCcceEEecCCChHHHHHHHhhhhc
Q 039455          159 GSRIII-TTRDEHVLK-GH----GVTNIYKVRGLDYVEALQLFHLKVS  200 (216)
Q Consensus       159 ~~~il~-tsr~~~~~~-~~----~~~~~~~l~~l~~~~~~~ll~~~~~  200 (216)
                      +..+++ +|+.+.... .+    .....+.+...+.++..++++.+..
T Consensus       313 ~~vivI~atn~~~~ld~al~r~gRfd~~i~i~~P~~~~R~~Il~~~~~  360 (733)
T TIGR01243       313 GRVIVIGATNRPDALDPALRRPGRFDREIVIRVPDKRARKEILKVHTR  360 (733)
T ss_pred             CCEEEEeecCChhhcCHHHhCchhccEEEEeCCcCHHHHHHHHHHHhc
Confidence            333343 555443211 11    2356788999999999999986553

This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.

>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment

Probab=98.76  E-value=2.4e-08  Score=73.62  Aligned_cols=133  Identities=14%  Similarity=0.220  Sum_probs=70.8

Q ss_pred             CCeeEEEEEecCCCcHHHHHHHHHHHhcCCCCceEeecccccccccc-CchHHHHHH---------HHHHHhhcccc--c
Q 039455           47 DDVRFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLANVREVSVTR-GLVPLQEQL---------LSEVLMERNLI--I  114 (216)
Q Consensus        47 ~~~~~i~I~G~~GiGKTtL~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l---------~~~~~~~~~~~--~  114 (216)
                      ..+..++|.|++|+|||||++.+++.+.. ....+.+... ...... ........+         ...........  .
T Consensus        24 ~~G~~~~i~G~nGsGKSTLl~~l~G~~~~-~~G~i~~~g~-~~~~~~~~~~~~~~~i~~~~q~~~~~~~~t~~~~l~~~l  101 (178)
T cd03229          24 EAGEIVALLGPSGSGKSTLLRCIAGLEEP-DSGSILIDGE-DLTDLEDELPPLRRRIGMVFQDFALFPHLTVLENIALGL  101 (178)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhCCCCC-CceEEEECCE-EccccchhHHHHhhcEEEEecCCccCCCCCHHHheeecC
Confidence            35689999999999999999999986543 2333332210 000000 000000000         00000000000  2


Q ss_pred             cchhhhHHHHHHHhCCceEEEEEeCCC------CHHHHHHhhcCCCCCCCCcEEEEEeCCchhhhccCCcceEEe
Q 039455          115 WDVHKGINLIRWRLCRKRVLVVLDDVD------QLEQLQALAGNHDWFGFGSRIIITTRDEHVLKGHGVTNIYKV  183 (216)
Q Consensus       115 ~~~~~~~~~l~~~l~~~~~llvlDd~~------~~~~~~~l~~~~~~~~~~~~il~tsr~~~~~~~~~~~~~~~l  183 (216)
                      +..+...-.+...+..++-++++|+.-      +...+..++..+.. ..+..+|++||+.+....+ +++.+.+
T Consensus       102 S~G~~qr~~la~al~~~p~llilDEP~~~LD~~~~~~l~~~l~~~~~-~~~~tiii~sH~~~~~~~~-~d~i~~l  174 (178)
T cd03229         102 SGGQQQRVALARALAMDPDVLLLDEPTSALDPITRREVRALLKSLQA-QLGITVVLVTHDLDEAARL-ADRVVVL  174 (178)
T ss_pred             CHHHHHHHHHHHHHHCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHH-hcCCEEEEEeCCHHHHHHh-cCEEEEE
Confidence            223344556788888899999999773      22334444433321 1257899999998776654 4555554

ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>COG2812 DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair]

Probab=98.76  E-value=8.4e-08  Score=80.59  Aligned_cols=164  Identities=19%  Similarity=0.245  Sum_probs=100.3

Q ss_pred             ccccccchhHHHHHHHHHhcCCCCeeEEEEEecCCCcHHHHHHHHHHHhcCCC-----CceEeeccccccccccCchHHH
Q 039455           25 VDGLVGIASRMEKMNGYLEAGLDDVRFIGICGMGGIGKTTLAKVLYNTLKDQF-----EASSFLANVREVSVTRGLVPLQ   99 (216)
Q Consensus        25 ~~~~vgR~~~~~~l~~~l~~~~~~~~~i~I~G~~GiGKTtL~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~   99 (216)
                      -.+++|-+...+.|...+..+ .-.....++|+.|+||||+|+.++..+.-.-     |+..-.. +...........+.
T Consensus        15 F~evvGQe~v~~~L~nal~~~-ri~hAYlfsG~RGvGKTt~Ari~AkalNC~~~~~~ePC~~C~~-Ck~I~~g~~~DviE   92 (515)
T COG2812          15 FDDVVGQEHVVKTLSNALENG-RIAHAYLFSGPRGVGKTTIARILAKALNCENGPTAEPCGKCIS-CKEINEGSLIDVIE   92 (515)
T ss_pred             HHHhcccHHHHHHHHHHHHhC-cchhhhhhcCCCCcCchhHHHHHHHHhcCCCCCCCCcchhhhh-hHhhhcCCcccchh
Confidence            345799999999999988764 3346788999999999999999998653221     1111000 00000000000000


Q ss_pred             HHHHHHHHhhccccccchhhhHHHHHHHh--------CCceEEEEEeCCCCH--HHHHHhhcCCCCCCCCcEEEEEeCCc
Q 039455          100 EQLLSEVLMERNLIIWDVHKGINLIRWRL--------CRKRVLVVLDDVDQL--EQLQALAGNHDWFGFGSRIIITTRDE  169 (216)
Q Consensus       100 ~~l~~~~~~~~~~~~~~~~~~~~~l~~~l--------~~~~~llvlDd~~~~--~~~~~l~~~~~~~~~~~~il~tsr~~  169 (216)
                      -+-++         .    ..++.++++.        .++--+.|||+++++  ..+..++.-+..-.....+|++|.++
T Consensus        93 iDaAS---------n----~gVddiR~i~e~v~y~P~~~ryKVyiIDEvHMLS~~afNALLKTLEEPP~hV~FIlATTe~  159 (515)
T COG2812          93 IDAAS---------N----TGVDDIREIIEKVNYAPSEGRYKVYIIDEVHMLSKQAFNALLKTLEEPPSHVKFILATTEP  159 (515)
T ss_pred             hhhhh---------c----cChHHHHHHHHHhccCCccccceEEEEecHHhhhHHHHHHHhcccccCccCeEEEEecCCc
Confidence            00000         0    0122222222        235569999999866  67888888776545667777777765


Q ss_pred             h-hhhc-cCCcceEEecCCChHHHHHHHhhhhcCCC
Q 039455          170 H-VLKG-HGVTNIYKVRGLDYVEALQLFHLKVSKGK  203 (216)
Q Consensus       170 ~-~~~~-~~~~~~~~l~~l~~~~~~~ll~~~~~~~~  203 (216)
                      . +... +...+.|.++.++.++....|...+-..+
T Consensus       160 ~Kip~TIlSRcq~f~fkri~~~~I~~~L~~i~~~E~  195 (515)
T COG2812         160 QKIPNTILSRCQRFDFKRLDLEEIAKHLAAILDKEG  195 (515)
T ss_pred             CcCchhhhhccccccccCCCHHHHHHHHHHHHHhcC
Confidence            3 2222 22348899999999999999988876665

>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos)

Probab=98.76  E-value=7.3e-08  Score=71.30  Aligned_cols=127  Identities=19%  Similarity=0.294  Sum_probs=71.0

Q ss_pred             CCeeEEEEEecCCCcHHHHHHHHHHHhcCCCCceEeeccc--cc-------------ccccc---Cc---hHHHHHHHHH
Q 039455           47 DDVRFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLANV--RE-------------VSVTR---GL---VPLQEQLLSE  105 (216)
Q Consensus        47 ~~~~~i~I~G~~GiGKTtL~~~~~~~~~~~~~~~~~~~~~--~~-------------~~~~~---~~---~~~~~~l~~~  105 (216)
                      ..+..++|.|++|+|||||++.+++..... ...+++...  ..             .....   .+   ....+.+...
T Consensus        24 ~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~-~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~~~t~~e~l~~~  102 (182)
T cd03215          24 RAGEIVGIAGLVGNGQTELAEALFGLRPPA-SGEITLDGKPVTRRSPRDAIRAGIAYVPEDRKREGLVLDLSVAENIALS  102 (182)
T ss_pred             cCCcEEEEECCCCCCHHHHHHHHhCCCCCC-CceEEECCEECCccCHHHHHhCCeEEecCCcccCcccCCCcHHHHHHHH
Confidence            346799999999999999999999865432 222222110  00             00000   00   0111111100


Q ss_pred             HHhhccccccchhhhHHHHHHHhCCceEEEEEeCCC------CHHHHHHhhcCCCCCCCCcEEEEEeCCchhhhccCCcc
Q 039455          106 VLMERNLIIWDVHKGINLIRWRLCRKRVLVVLDDVD------QLEQLQALAGNHDWFGFGSRIIITTRDEHVLKGHGVTN  179 (216)
Q Consensus       106 ~~~~~~~~~~~~~~~~~~l~~~l~~~~~llvlDd~~------~~~~~~~l~~~~~~~~~~~~il~tsr~~~~~~~~~~~~  179 (216)
                      .      ..+..+...-.+...+..++-++++|+.-      ..+.+..++..+.  ..+..+|++||+......+ +++
T Consensus       103 ~------~LS~G~~qrl~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~--~~~~tiii~sh~~~~~~~~-~d~  173 (182)
T cd03215         103 S------LLSGGNQQKVVLARWLARDPRVLILDEPTRGVDVGAKAEIYRLIRELA--DAGKAVLLISSELDELLGL-CDR  173 (182)
T ss_pred             h------hcCHHHHHHHHHHHHHccCCCEEEECCCCcCCCHHHHHHHHHHHHHHH--HCCCEEEEEeCCHHHHHHh-CCE
Confidence            0      02333344456888888899999999773      2234444444332  2367899999998766554 344


Q ss_pred             eEEe
Q 039455          180 IYKV  183 (216)
Q Consensus       180 ~~~l  183 (216)
                      .+.+
T Consensus       174 v~~l  177 (182)
T cd03215         174 ILVM  177 (182)
T ss_pred             EEEe
Confidence            4444

The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.

>TIGR00602 rad24 checkpoint protein rad24

Probab=98.75  E-value=1.4e-07  Score=81.68  Aligned_cols=53  Identities=28%  Similarity=0.395  Sum_probs=43.8

Q ss_pred             CCcccccccchhHHHHHHHHHhcC---CCCeeEEEEEecCCCcHHHHHHHHHHHhc
Q 039455           22 PSAVDGLVGIASRMEKMNGYLEAG---LDDVRFIGICGMGGIGKTTLAKVLYNTLK   74 (216)
Q Consensus        22 ~~~~~~~vgR~~~~~~l~~~l~~~---~~~~~~i~I~G~~GiGKTtL~~~~~~~~~   74 (216)
                      |....+++|.++.++.+..++...   .....+++|+||+|+||||+++.++..+.
T Consensus        80 P~~ldel~~~~~ki~~l~~~l~~~~~~~~~~~illL~GP~GsGKTTl~~~la~~l~  135 (637)
T TIGR00602        80 PETQHELAVHKKKIEEVETWLKAQVLENAPKRILLITGPSGCGKSTTIKILSKELG  135 (637)
T ss_pred             CCCHHHhcCcHHHHHHHHHHHHhcccccCCCcEEEEECCCCCCHHHHHHHHHHHhh
Confidence            455678999999999999998743   23346799999999999999999998653

This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>PRK08181 transposase; Validated

Probab=98.75  E-value=6.8e-08  Score=75.45  Aligned_cols=35  Identities=23%  Similarity=0.117  Sum_probs=28.1

Q ss_pred             eEEEEEecCCCcHHHHHHHHHHHhcCCCCceEeec
Q 039455           50 RFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLA   84 (216)
Q Consensus        50 ~~i~I~G~~GiGKTtL~~~~~~~~~~~~~~~~~~~   84 (216)
                      ..++++|++|+|||+|+..+++.+......+.|+.
T Consensus       107 ~nlll~Gp~GtGKTHLa~Aia~~a~~~g~~v~f~~  141 (269)
T PRK08181        107 ANLLLFGPPGGGKSHLAAAIGLALIENGWRVLFTR  141 (269)
T ss_pred             ceEEEEecCCCcHHHHHHHHHHHHHHcCCceeeee
Confidence            56999999999999999999987765544455553

>TIGR00763 lon ATP-dependent protease La

Probab=98.74  E-value=2.4e-07  Score=82.88  Aligned_cols=158  Identities=18%  Similarity=0.199  Sum_probs=84.6

Q ss_pred             ccccchhHHHHHHHHHhc----CCCCeeEEEEEecCCCcHHHHHHHHHHHhcCCCCceEeeccccccccccCchHHHHHH
Q 039455           27 GLVGIASRMEKMNGYLEA----GLDDVRFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLANVREVSVTRGLVPLQEQL  102 (216)
Q Consensus        27 ~~vgR~~~~~~l~~~l~~----~~~~~~~i~I~G~~GiGKTtL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  102 (216)
                      ..+|.+...+++..++..    +...++.++++||+|+|||++|+.++..+...|.....    ..   ....    ..+
T Consensus       321 ~~~G~~~~k~~i~~~~~~~~~~~~~~~~~lll~GppG~GKT~lAk~iA~~l~~~~~~i~~----~~---~~~~----~~i  389 (775)
T TIGR00763       321 DHYGLKKVKERILEYLAVQKLRGKMKGPILCLVGPPGVGKTSLGKSIAKALNRKFVRFSL----GG---VRDE----AEI  389 (775)
T ss_pred             hcCChHHHHHHHHHHHHHHHhhcCCCCceEEEECCCCCCHHHHHHHHHHHhcCCeEEEeC----CC---cccH----HHH
Confidence            578888888888886642    23345689999999999999999999987543321111    10   0010    111


Q ss_pred             HHHHHhhccccccchhhhHHHHHHHhCCceEEEEEeCCCCHHH------HHHhhcC--------CCCCC-------CCcE
Q 039455          103 LSEVLMERNLIIWDVHKGINLIRWRLCRKRVLVVLDDVDQLEQ------LQALAGN--------HDWFG-------FGSR  161 (216)
Q Consensus       103 ~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~llvlDd~~~~~~------~~~l~~~--------~~~~~-------~~~~  161 (216)
                      ..   ....+...........+.......+ +++||+++....      ...++..        |.+..       .+..
T Consensus       390 ~g---~~~~~~g~~~g~i~~~l~~~~~~~~-villDEidk~~~~~~~~~~~aLl~~ld~~~~~~f~d~~~~~~~d~s~v~  465 (775)
T TIGR00763       390 RG---HRRTYVGAMPGRIIQGLKKAKTKNP-LFLLDEIDKIGSSFRGDPASALLEVLDPEQNNAFSDHYLDVPFDLSKVI  465 (775)
T ss_pred             cC---CCCceeCCCCchHHHHHHHhCcCCC-EEEEechhhcCCccCCCHHHHHHHhcCHHhcCccccccCCceeccCCEE
Confidence            00   0000011112223333443333334 788999965411      1222211        11111       2344


Q ss_pred             EEEEeCCchhhh--ccCCcceEEecCCChHHHHHHHhhhh
Q 039455          162 IIITTRDEHVLK--GHGVTNIYKVRGLDYVEALQLFHLKV  199 (216)
Q Consensus       162 il~tsr~~~~~~--~~~~~~~~~l~~l~~~~~~~ll~~~~  199 (216)
                      +|.||.......  ..+....+++++++.++..+++.++.
T Consensus       466 ~I~TtN~~~~i~~~L~~R~~vi~~~~~~~~e~~~I~~~~l  505 (775)
T TIGR00763       466 FIATANSIDTIPRPLLDRMEVIELSGYTEEEKLEIAKKYL  505 (775)
T ss_pred             EEEecCCchhCCHHHhCCeeEEecCCCCHHHHHHHHHHHH
Confidence            455665432211  12334789999999999888887654

This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.

>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis

Probab=98.74  E-value=1e-07  Score=70.18  Aligned_cols=126  Identities=20%  Similarity=0.149  Sum_probs=71.7

Q ss_pred             CCeeEEEEEecCCCcHHHHHHHHHHHhcCCCCceEeeccccc-------------cccccCchHHHHHHHHHHHhhcccc
Q 039455           47 DDVRFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLANVRE-------------VSVTRGLVPLQEQLLSEVLMERNLI  113 (216)
Q Consensus        47 ~~~~~i~I~G~~GiGKTtL~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~~~~~~~l~~~~~~~~~~~  113 (216)
                      ..+..++|.|++|+|||||++.+++..... ...+++....-             ......+..  ..+...+    ...
T Consensus        26 ~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~-~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~--~tv~~~i----~~~   98 (178)
T cd03247          26 KQGEKIALLGRSGSGKSTLLQLLTGDLKPQ-QGEITLDGVPVSDLEKALSSLISVLNQRPYLFD--TTLRNNL----GRR   98 (178)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhccCCCC-CCEEEECCEEHHHHHHHHHhhEEEEccCCeeec--ccHHHhh----ccc
Confidence            356899999999999999999999865433 23333321100             000000000  0011000    112


Q ss_pred             ccchhhhHHHHHHHhCCceEEEEEeCCCC------HHHHHHhhcCCCCCCCCcEEEEEeCCchhhhccCCcceEEec
Q 039455          114 IWDVHKGINLIRWRLCRKRVLVVLDDVDQ------LEQLQALAGNHDWFGFGSRIIITTRDEHVLKGHGVTNIYKVR  184 (216)
Q Consensus       114 ~~~~~~~~~~l~~~l~~~~~llvlDd~~~------~~~~~~l~~~~~~~~~~~~il~tsr~~~~~~~~~~~~~~~l~  184 (216)
                      .+..+...-.+...+..++-++++|+...      .+.+..++..+.   .+..+|++||+.+....  ++..+.+.
T Consensus        99 LS~G~~qrv~laral~~~p~~lllDEP~~~LD~~~~~~l~~~l~~~~---~~~tii~~sh~~~~~~~--~d~~~~l~  170 (178)
T cd03247          99 FSGGERQRLALARILLQDAPIVLLDEPTVGLDPITERQLLSLIFEVL---KDKTLIWITHHLTGIEH--MDKILFLE  170 (178)
T ss_pred             CCHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHHc---CCCEEEEEecCHHHHHh--CCEEEEEE
Confidence            22234444567888889999999998742      233444444432   36789999999887753  45555553

The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.

>PRK07399 DNA polymerase III subunit delta'; Validated

Probab=98.74  E-value=6e-07  Score=71.88  Aligned_cols=167  Identities=15%  Similarity=0.130  Sum_probs=94.7

Q ss_pred             cccccchhHHHHHHHHHhcCCCCeeEEEEEecCCCcHHHHHHHHHHHhcC---------------CCCceEeeccccccc
Q 039455           26 DGLVGIASRMEKMNGYLEAGLDDVRFIGICGMGGIGKTTLAKVLYNTLKD---------------QFEASSFLANVREVS   90 (216)
Q Consensus        26 ~~~vgR~~~~~~l~~~l~~~~~~~~~i~I~G~~GiGKTtL~~~~~~~~~~---------------~~~~~~~~~~~~~~~   90 (216)
                      .+++|.+...+.|.+.+..+ .-...+.++||.|+||+++|..++..+-.               ..|...|+.-.... 
T Consensus         4 ~~iiGq~~~~~~L~~~i~~~-rl~ha~Lf~G~~G~Gk~~~A~~~a~~llc~~~c~~c~~~~~~~~~hPDl~~i~p~~~~-   81 (314)
T PRK07399          4 ANLIGQPLAIELLTAAIKQN-RIAPAYLFAGPEGVGRKLAALCFIEGLLSQGSPSKNIRRRLEEGNHPDLLWVEPTYQH-   81 (314)
T ss_pred             HHhCCHHHHHHHHHHHHHhC-CCCceEEEECCCCCCHHHHHHHHHHHHcCCCCCCCcHhcccccCCCCCEEEEeccccc-
Confidence            35799999999999988764 33579999999999999999999986532               23444554311000 


Q ss_pred             cccCchHHHHHHHHHHHhhcc-ccccchhhhHHHHHHHh-----CCceEEEEEeCCCCH--HHHHHhhcCCCCCCCCcEE
Q 039455           91 VTRGLVPLQEQLLSEVLMERN-LIIWDVHKGINLIRWRL-----CRKRVLVVLDDVDQL--EQLQALAGNHDWFGFGSRI  162 (216)
Q Consensus        91 ~~~~~~~~~~~l~~~~~~~~~-~~~~~~~~~~~~l~~~l-----~~~~~llvlDd~~~~--~~~~~l~~~~~~~~~~~~i  162 (216)
                         .-.......+........ ...-..+. +..+.+.+     .++.-++|||+++..  .....++..+..-. .+.+
T Consensus        82 ---~g~~~~~~~~~~~~~~~~~~~~I~id~-ir~i~~~l~~~p~~~~~kVvII~~ae~m~~~aaNaLLK~LEEPp-~~~f  156 (314)
T PRK07399         82 ---QGKLITASEAEEAGLKRKAPPQIRLEQ-IREIKRFLSRPPLEAPRKVVVIEDAETMNEAAANALLKTLEEPG-NGTL  156 (314)
T ss_pred             ---cccccchhhhhhccccccccccCcHHH-HHHHHHHHccCcccCCceEEEEEchhhcCHHHHHHHHHHHhCCC-CCeE
Confidence               000000000000000000 00001111 12222222     345679999999755  34555555443323 4455


Q ss_pred             EEEeCCc-hhhhcc-CCcceEEecCCChHHHHHHHhhhh
Q 039455          163 IITTRDE-HVLKGH-GVTNIYKVRGLDYVEALQLFHLKV  199 (216)
Q Consensus       163 l~tsr~~-~~~~~~-~~~~~~~l~~l~~~~~~~ll~~~~  199 (216)
                      |++|.++ .+...+ .....+++.+++.++..+.+.+..
T Consensus       157 ILi~~~~~~Ll~TI~SRcq~i~f~~l~~~~~~~~L~~~~  195 (314)
T PRK07399        157 ILIAPSPESLLPTIVSRCQIIPFYRLSDEQLEQVLKRLG  195 (314)
T ss_pred             EEEECChHhCcHHHHhhceEEecCCCCHHHHHHHHHHhh
Confidence            5555544 333333 234889999999999999999875

>PF07693 KAP_NTPase: KAP family P-loop domain; InterPro: IPR011646 The KAP (after Kidins220/ARMS and PifA) family of predicted NTPases are sporadically distributed across a wide phylogenetic range in bacteria and in animals

Probab=98.73  E-value=7.1e-07  Score=71.96  Aligned_cols=46  Identities=24%  Similarity=0.358  Sum_probs=37.7

Q ss_pred             chhHHHHHHHHHhcC-CCCeeEEEEEecCCCcHHHHHHHHHHHhcCC
Q 039455           31 IASRMEKMNGYLEAG-LDDVRFIGICGMGGIGKTTLAKVLYNTLKDQ   76 (216)
Q Consensus        31 R~~~~~~l~~~l~~~-~~~~~~i~I~G~~GiGKTtL~~~~~~~~~~~   76 (216)
                      |+...+.|.+.+... ...+.+|+|.|+-|+|||++++.+.+.+...
T Consensus         1 ~~~~a~~la~~I~~~~~~~~~~IgL~G~WGsGKSs~l~~l~~~L~~~   47 (325)
T PF07693_consen    1 RKPYAKALAEIIKNPDSDDPFVIGLYGEWGSGKSSFLNMLKEELKED   47 (325)
T ss_pred             ChHHHHHHHHHHhccCCCCCeEEEEECCCCCCHHHHHHHHHHHHhcc
Confidence            455667777777754 2677899999999999999999999988766

Many of the prokaryotic KAP NTPases are encoded in plasmids and tend to undergo disruption to form pseudogenes. A unique feature of all eukaryotic and certain bacterial KAP NTPases is the presence of two or four transmembrane helices inserted into the P-loop NTPase domain. These transmembrane helices anchor KAP NTPases in the membrane such that the P-loop domain is located on the intracellular side [].

>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function

Probab=98.73  E-value=3.2e-07  Score=69.77  Aligned_cols=56  Identities=30%  Similarity=0.367  Sum_probs=44.1

Q ss_pred             CCCcccccccchhHHHHHHHHHhc--CCCCeeEEEEEecCCCcHHHHHHHHHHHhcCC
Q 039455           21 FPSAVDGLVGIASRMEKMNGYLEA--GLDDVRFIGICGMGGIGKTTLAKVLYNTLKDQ   76 (216)
Q Consensus        21 ~~~~~~~~vgR~~~~~~l~~~l~~--~~~~~~~i~I~G~~GiGKTtL~~~~~~~~~~~   76 (216)
                      .+...+.++|-+.+.+.|.+....  .+.....+.++|+.|+|||++++.+.+.+...
T Consensus        22 ~~~~l~~L~Gie~Qk~~l~~Nt~~Fl~G~pannvLL~G~rGtGKSSlVkall~~y~~~   79 (249)
T PF05673_consen   22 DPIRLDDLIGIERQKEALIENTEQFLQGLPANNVLLWGARGTGKSSLVKALLNEYADQ   79 (249)
T ss_pred             CCCCHHHhcCHHHHHHHHHHHHHHHHcCCCCcceEEecCCCCCHHHHHHHHHHHHhhc
Confidence            345567899999999998775431  12345788999999999999999999987654

>cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor

Probab=98.72  E-value=6.4e-08  Score=75.00  Aligned_cols=127  Identities=17%  Similarity=0.113  Sum_probs=67.4

Q ss_pred             CeeEEEEEecCCCcHHHHHHHHHHHhcCCCCceEeec-c----ccccc--cccCchHHH--------------HHHHHHH
Q 039455           48 DVRFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLA-N----VREVS--VTRGLVPLQ--------------EQLLSEV  106 (216)
Q Consensus        48 ~~~~i~I~G~~GiGKTtL~~~~~~~~~~~~~~~~~~~-~----~~~~~--~~~~~~~~~--------------~~l~~~~  106 (216)
                      .+.+++|.|++|+|||||++.+++........+.|-. .    .+...  ......+.+              .+++..+
T Consensus        24 ~Ge~~~i~G~NGsGKSTLlk~L~G~~~p~~G~i~~~g~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~l~~l  103 (246)
T cd03237          24 ESEVIGILGPNGIGKTTFIKMLAGVLKPDEGDIEIELDTVSYKPQYIKADYEGTVRDLLSSITKDFYTHPYFKTEIAKPL  103 (246)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCCcCCCCeEEECCceEEEecccccCCCCCCHHHHHHHHhhhccccHHHHHHHHHHc
Confidence            4689999999999999999999986543322111110 0    01000  001111111              1111111


Q ss_pred             Hhh-----ccccccchhhhHHHHHHHhCCceEEEEEeCCCC------HHHHHHhhcCCCCCCCCcEEEEEeCCchhhhcc
Q 039455          107 LME-----RNLIIWDVHKGINLIRWRLCRKRVLVVLDDVDQ------LEQLQALAGNHDWFGFGSRIIITTRDEHVLKGH  175 (216)
Q Consensus       107 ~~~-----~~~~~~~~~~~~~~l~~~l~~~~~llvlDd~~~------~~~~~~l~~~~~~~~~~~~il~tsr~~~~~~~~  175 (216)
                      ...     .....+..+...-.+...+..++-++++|+.-.      ...+..++..+.. ..+..||++||+.+.+..+
T Consensus       104 ~l~~~~~~~~~~LSgGe~qrv~iaraL~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~~~tiiivsHd~~~~~~~  182 (246)
T cd03237         104 QIEQILDREVPELSGGELQRVAIAACLSKDADIYLLDEPSAYLDVEQRLMASKVIRRFAE-NNEKTAFVVEHDIIMIDYL  182 (246)
T ss_pred             CCHHHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHH-hcCCEEEEEeCCHHHHHHh
Confidence            000     001112233334467888888999999998732      2333343333321 2367899999998776654

The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.

>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules

Probab=98.71  E-value=4.7e-08  Score=70.54  Aligned_cols=125  Identities=18%  Similarity=0.224  Sum_probs=72.6

Q ss_pred             CeeEEEEEecCCCcHHHHHHHHHHHhcCCCCceEeeccccccccccCchHHHHHHHHHHHhhccccccchhhhHHHHHHH
Q 039455           48 DVRFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLANVREVSVTRGLVPLQEQLLSEVLMERNLIIWDVHKGINLIRWR  127 (216)
Q Consensus        48 ~~~~i~I~G~~GiGKTtL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~  127 (216)
                      .+..++|.|++|+|||||++.+++.+.. ....+++... ...   ...  .......+  ....+.+..+.....+...
T Consensus        24 ~g~~~~i~G~nGsGKStll~~l~g~~~~-~~G~i~~~~~-~~~---~~~--~~~~~~~i--~~~~qlS~G~~~r~~l~~~   94 (157)
T cd00267          24 AGEIVALVGPNGSGKSTLLRAIAGLLKP-TSGEILIDGK-DIA---KLP--LEELRRRI--GYVPQLSGGQRQRVALARA   94 (157)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCCCC-CccEEEECCE-Ecc---cCC--HHHHHhce--EEEeeCCHHHHHHHHHHHH
Confidence            4579999999999999999999987653 3343444311 100   000  00110000  0001123334445567778


Q ss_pred             hCCceEEEEEeCCCC------HHHHHHhhcCCCCCCCCcEEEEEeCCchhhhccCCcceEEec
Q 039455          128 LCRKRVLVVLDDVDQ------LEQLQALAGNHDWFGFGSRIIITTRDEHVLKGHGVTNIYKVR  184 (216)
Q Consensus       128 l~~~~~llvlDd~~~------~~~~~~l~~~~~~~~~~~~il~tsr~~~~~~~~~~~~~~~l~  184 (216)
                      +...+-++++|+...      ...+..++..+.  ..+..++++||+.+....+ +++.+.+.
T Consensus        95 l~~~~~i~ilDEp~~~lD~~~~~~l~~~l~~~~--~~~~tii~~sh~~~~~~~~-~d~i~~l~  154 (157)
T cd00267          95 LLLNPDLLLLDEPTSGLDPASRERLLELLRELA--EEGRTVIIVTHDPELAELA-ADRVIVLK  154 (157)
T ss_pred             HhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHH--HCCCEEEEEeCCHHHHHHh-CCEEEEEe
Confidence            888899999998742      233444443332  2357899999998887765 45555553

The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR)

Probab=98.71  E-value=1.5e-07  Score=70.31  Aligned_cols=130  Identities=17%  Similarity=0.152  Sum_probs=71.0

Q ss_pred             CCeeEEEEEecCCCcHHHHHHHHHHHh--cCCCCceEeecc-----------ccccccccCc---hHHHHHHHHHHHhhc
Q 039455           47 DDVRFIGICGMGGIGKTTLAKVLYNTL--KDQFEASSFLAN-----------VREVSVTRGL---VPLQEQLLSEVLMER  110 (216)
Q Consensus        47 ~~~~~i~I~G~~GiGKTtL~~~~~~~~--~~~~~~~~~~~~-----------~~~~~~~~~~---~~~~~~l~~~~~~~~  110 (216)
                      ..+..++|.|++|+|||||++.+++..  ... ...+++..           .........+   ....+.+.... .. 
T Consensus        33 ~~Ge~~~l~G~nGsGKStLl~~i~Gl~~~~~~-~G~i~~~g~~~~~~~~~~~i~~~~q~~~~~~~~t~~~~i~~~~-~~-  109 (194)
T cd03213          33 KPGELTAIMGPSGAGKSTLLNALAGRRTGLGV-SGEVLINGRPLDKRSFRKIIGYVPQDDILHPTLTVRETLMFAA-KL-  109 (194)
T ss_pred             cCCcEEEEECCCCCCHHHHHHHHhCCCCCCCC-ceEEEECCEeCchHhhhheEEEccCcccCCCCCcHHHHHHHHH-Hh-
Confidence            456899999999999999999999866  422 22222210           0000001110   11222221100 00 


Q ss_pred             cccccchhhhHHHHHHHhCCceEEEEEeCCCC------HHHHHHhhcCCCCCCCCcEEEEEeCCch-hhhccCCcceEEe
Q 039455          111 NLIIWDVHKGINLIRWRLCRKRVLVVLDDVDQ------LEQLQALAGNHDWFGFGSRIIITTRDEH-VLKGHGVTNIYKV  183 (216)
Q Consensus       111 ~~~~~~~~~~~~~l~~~l~~~~~llvlDd~~~------~~~~~~l~~~~~~~~~~~~il~tsr~~~-~~~~~~~~~~~~l  183 (216)
                       ...+..+...-.+...+..++-++++|+..+      .+.+..++..+.  ..+..+|++||+.+ ....+ +++.+.+
T Consensus       110 -~~LS~G~~qrv~laral~~~p~illlDEP~~~LD~~~~~~l~~~l~~~~--~~~~tiii~sh~~~~~~~~~-~d~v~~l  185 (194)
T cd03213         110 -RGLSGGERKRVSIALELVSNPSLLFLDEPTSGLDSSSALQVMSLLRRLA--DTGRTIICSIHQPSSEIFEL-FDKLLLL  185 (194)
T ss_pred             -ccCCHHHHHHHHHHHHHHcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHH--hCCCEEEEEecCchHHHHHh-cCEEEEE
Confidence             0233344445568888888999999998732      233444443332  24678999999875 34333 3444444

DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.

>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]

Probab=98.71  E-value=6.6e-08  Score=74.28  Aligned_cols=127  Identities=17%  Similarity=0.156  Sum_probs=76.0

Q ss_pred             CCeeEEEEEecCCCcHHHHHHHHHHHhcCCCCceEeecc-ccccccccCchHHHHHHHHHHH------hhccccccchhh
Q 039455           47 DDVRFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLAN-VREVSVTRGLVPLQEQLLSEVL------MERNLIIWDVHK  119 (216)
Q Consensus        47 ~~~~~i~I~G~~GiGKTtL~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~------~~~~~~~~~~~~  119 (216)
                      ..+..++|+|++|+||||+++.+..-.......+.|-.. ..... .........+++....      ...+.+.+..+.
T Consensus        37 ~~ge~~glVGESG~GKSTlgr~i~~L~~pt~G~i~f~g~~i~~~~-~~~~~~~v~elL~~Vgl~~~~~~ryPhelSGGQr  115 (268)
T COG4608          37 KEGETLGLVGESGCGKSTLGRLILGLEEPTSGEILFEGKDITKLS-KEERRERVLELLEKVGLPEEFLYRYPHELSGGQR  115 (268)
T ss_pred             cCCCEEEEEecCCCCHHHHHHHHHcCcCCCCceEEEcCcchhhcc-hhHHHHHHHHHHHHhCCCHHHhhcCCcccCchhh
Confidence            456899999999999999999999876654333333211 11110 0111222333333322      122233445555


Q ss_pred             hHHHHHHHhCCceEEEEEeCCCCH------HHHHHhhcCCCCCCCCcEEEEEeCCchhhhcc
Q 039455          120 GINLIRWRLCRKRVLVVLDDVDQL------EQLQALAGNHDWFGFGSRIIITTRDEHVLKGH  175 (216)
Q Consensus       120 ~~~~l~~~l~~~~~llvlDd~~~~------~~~~~l~~~~~~~~~~~~il~tsr~~~~~~~~  175 (216)
                      ..-.+++++.-++-++|.|+.-+.      .++-.++..+.. ..+...+++||+..+...+
T Consensus       116 QRi~IARALal~P~liV~DEpvSaLDvSiqaqIlnLL~dlq~-~~~lt~lFIsHDL~vv~~i  176 (268)
T COG4608         116 QRIGIARALALNPKLIVADEPVSALDVSVQAQILNLLKDLQE-ELGLTYLFISHDLSVVRYI  176 (268)
T ss_pred             hhHHHHHHHhhCCcEEEecCchhhcchhHHHHHHHHHHHHHH-HhCCeEEEEEEEHHhhhhh
Confidence            566789999999999999988543      222233322210 2467899999998776655

>PRK08116 hypothetical protein; Validated

Probab=98.70  E-value=1.8e-07  Score=73.32  Aligned_cols=35  Identities=29%  Similarity=0.237  Sum_probs=27.8

Q ss_pred             eeEEEEEecCCCcHHHHHHHHHHHhcCCCCceEee
Q 039455           49 VRFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFL   83 (216)
Q Consensus        49 ~~~i~I~G~~GiGKTtL~~~~~~~~~~~~~~~~~~   83 (216)
                      ...+.|+|++|+|||+||..+++.+..+...+.++
T Consensus       114 ~~gl~l~G~~GtGKThLa~aia~~l~~~~~~v~~~  148 (268)
T PRK08116        114 NVGLLLWGSVGTGKTYLAACIANELIEKGVPVIFV  148 (268)
T ss_pred             CceEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEE
Confidence            35699999999999999999999876554444444

>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein

Probab=98.70  E-value=1.2e-07  Score=72.11  Aligned_cols=62  Identities=13%  Similarity=0.193  Sum_probs=40.6

Q ss_pred             hhHHHHHHHhCCceEEEEEeCCCC------HHHHHHhhcCCCCCCCCcEEEEEeCCchhhhccCCcceEEe
Q 039455          119 KGINLIRWRLCRKRVLVVLDDVDQ------LEQLQALAGNHDWFGFGSRIIITTRDEHVLKGHGVTNIYKV  183 (216)
Q Consensus       119 ~~~~~l~~~l~~~~~llvlDd~~~------~~~~~~l~~~~~~~~~~~~il~tsr~~~~~~~~~~~~~~~l  183 (216)
                      ...-.+...+..++-++++|+.-+      ...+..++..+.  ..+..||++||+.+....+ ++..+.+
T Consensus       144 ~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~--~~~~tii~vsH~~~~~~~~-~d~i~~l  211 (216)
T TIGR00960       144 QQRVAIARAIVHKPPLLLADEPTGNLDPELSRDIMRLFEEFN--RRGTTVLVATHDINLVETY-RHRTLTL  211 (216)
T ss_pred             HHHHHHHHHHhcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHH--HCCCEEEEEeCCHHHHHHh-CCEEEEE
Confidence            334457888888999999998732      233444444332  2467899999998876654 4555554

>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]

Probab=98.69  E-value=2.7e-07  Score=68.58  Aligned_cols=62  Identities=11%  Similarity=0.086  Sum_probs=44.2

Q ss_pred             ccccchhhhHHHHHHHhCCceEEEEEeCCCCH------HHHHHhhcCCCCCCCCcEEEEEeCCchhhhcc
Q 039455          112 LIIWDVHKGINLIRWRLCRKRVLVVLDDVDQL------EQLQALAGNHDWFGFGSRIIITTRDEHVLKGH  175 (216)
Q Consensus       112 ~~~~~~~~~~~~l~~~l~~~~~llvlDd~~~~------~~~~~l~~~~~~~~~~~~il~tsr~~~~~~~~  175 (216)
                      ...+..+....++.+.+..+|-++.||+.-+.      .++-+++..+.  ..|-+.++.||+..++...
T Consensus       135 ~qLSGGQqQRVAIARALaM~P~vmLFDEPTSALDPElv~EVL~vm~~LA--~eGmTMivVTHEM~FAr~V  202 (240)
T COG1126         135 AQLSGGQQQRVAIARALAMDPKVMLFDEPTSALDPELVGEVLDVMKDLA--EEGMTMIIVTHEMGFAREV  202 (240)
T ss_pred             cccCcHHHHHHHHHHHHcCCCCEEeecCCcccCCHHHHHHHHHHHHHHH--HcCCeEEEEechhHHHHHh
Confidence            33455666777899999999999999988542      23333333333  4678899999998887765

>smart00382 AAA ATPases associated with a variety of cellular activities

Probab=98.69  E-value=1.8e-07  Score=65.42  Aligned_cols=36  Identities=33%  Similarity=0.330  Sum_probs=28.7

Q ss_pred             eeEEEEEecCCCcHHHHHHHHHHHhcCCCCceEeec
Q 039455           49 VRFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLA   84 (216)
Q Consensus        49 ~~~i~I~G~~GiGKTtL~~~~~~~~~~~~~~~~~~~   84 (216)
                      ...+.|+|++|+||||+++.++..+......+.++.
T Consensus         2 ~~~~~l~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~   37 (148)
T smart00382        2 GEVILIVGPPGSGKTTLARALARELGPPGGGVIYID   37 (148)
T ss_pred             CCEEEEECCCCCcHHHHHHHHHhccCCCCCCEEEEC
Confidence            368999999999999999999998765543455554

AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.

>KOG2004 consensus Mitochondrial ATP-dependent protease PIM1/LON [Posttranslational modification, protein turnover, chaperones]

Probab=98.69  E-value=2.6e-07  Score=79.23  Aligned_cols=53  Identities=23%  Similarity=0.429  Sum_probs=45.9

Q ss_pred             ccccccchhHHHHHHHHHh----cCCCCeeEEEEEecCCCcHHHHHHHHHHHhcCCC
Q 039455           25 VDGLVGIASRMEKMNGYLE----AGLDDVRFIGICGMGGIGKTTLAKVLYNTLKDQF   77 (216)
Q Consensus        25 ~~~~vgR~~~~~~l~~~l~----~~~~~~~~i~I~G~~GiGKTtL~~~~~~~~~~~~   77 (216)
                      ....+|.++..+++..++.    .++.++++++++||+|+|||++++.++..+...|
T Consensus       410 deDHYgm~dVKeRILEfiAV~kLrgs~qGkIlCf~GPPGVGKTSI~kSIA~ALnRkF  466 (906)
T KOG2004|consen  410 DEDHYGMEDVKERILEFIAVGKLRGSVQGKILCFVGPPGVGKTSIAKSIARALNRKF  466 (906)
T ss_pred             cccccchHHHHHHHHHHHHHHhhcccCCCcEEEEeCCCCCCcccHHHHHHHHhCCce
Confidence            4578999999999999876    3356789999999999999999999999887665

>PRK13539 cytochrome c biogenesis protein CcmA; Provisional

Probab=98.69  E-value=1.1e-07  Score=71.87  Aligned_cols=63  Identities=17%  Similarity=0.156  Sum_probs=42.0

Q ss_pred             HHHHHHHhCCceEEEEEeCCC------CHHHHHHhhcCCCCCCCCcEEEEEeCCchhhhccCCcceEEecCCCh
Q 039455          121 INLIRWRLCRKRVLVVLDDVD------QLEQLQALAGNHDWFGFGSRIIITTRDEHVLKGHGVTNIYKVRGLDY  188 (216)
Q Consensus       121 ~~~l~~~l~~~~~llvlDd~~------~~~~~~~l~~~~~~~~~~~~il~tsr~~~~~~~~~~~~~~~l~~l~~  188 (216)
                      .-.+...+..++-++++|+..      ....+..++..+.  ..+..||++||+.+....   +..+.++++..
T Consensus       135 rl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~--~~~~tiii~sH~~~~~~~---~~~~~~~~~~~  203 (207)
T PRK13539        135 RVALARLLVSNRPIWILDEPTAALDAAAVALFAELIRAHL--AQGGIVIAATHIPLGLPG---ARELDLGPFAA  203 (207)
T ss_pred             HHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHH--HCCCEEEEEeCCchhhcc---CcEEeecCccC
Confidence            345677778889999999773      2234444444332  246789999999876665   56777776443

>PRK13543 cytochrome c biogenesis protein CcmA; Provisional

Probab=98.68  E-value=1.3e-07  Score=71.75  Aligned_cols=62  Identities=15%  Similarity=0.074  Sum_probs=40.1

Q ss_pred             hhHHHHHHHhCCceEEEEEeCCC------CHHHHHHhhcCCCCCCCCcEEEEEeCCchhhhccCCcceEEe
Q 039455          119 KGINLIRWRLCRKRVLVVLDDVD------QLEQLQALAGNHDWFGFGSRIIITTRDEHVLKGHGVTNIYKV  183 (216)
Q Consensus       119 ~~~~~l~~~l~~~~~llvlDd~~------~~~~~~~l~~~~~~~~~~~~il~tsr~~~~~~~~~~~~~~~l  183 (216)
                      .....+...+..++-++++|+.-      +.+.+..++..+.  ..+..+|++||+......+ ++..+.+
T Consensus       143 ~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~--~~~~tiii~sH~~~~~~~~-~~~i~~l  210 (214)
T PRK13543        143 KKRLALARLWLSPAPLWLLDEPYANLDLEGITLVNRMISAHL--RGGGAALVTTHGAYAAPPV-RTRMLTL  210 (214)
T ss_pred             HHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHH--hCCCEEEEEecChhhhhhh-cceEEEE
Confidence            34445777788888999999873      2233444443332  3467899999998877665 4444444

>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters

Probab=98.68  E-value=2.2e-07  Score=69.34  Aligned_cols=132  Identities=16%  Similarity=0.157  Sum_probs=70.9

Q ss_pred             CCeeEEEEEecCCCcHHHHHHHHHHHhc-CCCCceEeecc----------cccccccc---CchHHHHHHHHHHHhhccc
Q 039455           47 DDVRFIGICGMGGIGKTTLAKVLYNTLK-DQFEASSFLAN----------VREVSVTR---GLVPLQEQLLSEVLMERNL  112 (216)
Q Consensus        47 ~~~~~i~I~G~~GiGKTtL~~~~~~~~~-~~~~~~~~~~~----------~~~~~~~~---~~~~~~~~l~~~~~~~~~~  112 (216)
                      ..+..++|+|++|+|||||++.+++... ......+++..          ........   ......+.+......   .
T Consensus        31 ~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~~~G~i~~~g~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~---~  107 (192)
T cd03232          31 KPGTLTALMGESGAGKTTLLDVLAGRKTAGVITGEILINGRPLDKNFQRSTGYVEQQDVHSPNLTVREALRFSALL---R  107 (192)
T ss_pred             eCCcEEEEECCCCCCHHHHHHHHhCCCcCCCcceEEEECCEehHHHhhhceEEecccCccccCCcHHHHHHHHHHH---h
Confidence            3468999999999999999999997532 11122222210          00000000   001112222111000   0


Q ss_pred             cccchhhhHHHHHHHhCCceEEEEEeCCCC------HHHHHHhhcCCCCCCCCcEEEEEeCCchh-hhccCCcceEEec
Q 039455          113 IIWDVHKGINLIRWRLCRKRVLVVLDDVDQ------LEQLQALAGNHDWFGFGSRIIITTRDEHV-LKGHGVTNIYKVR  184 (216)
Q Consensus       113 ~~~~~~~~~~~l~~~l~~~~~llvlDd~~~------~~~~~~l~~~~~~~~~~~~il~tsr~~~~-~~~~~~~~~~~l~  184 (216)
                      ..+..+...-.+...+..++-++++|+...      ...+..++..+.  ..+..+|++||+.+. .... +++.+.+.
T Consensus       108 ~LSgGe~qrv~la~al~~~p~vlllDEP~~~LD~~~~~~l~~~l~~~~--~~~~tiiivtH~~~~~~~~~-~d~i~~l~  183 (192)
T cd03232         108 GLSVEQRKRLTIGVELAAKPSILFLDEPTSGLDSQAAYNIVRFLKKLA--DSGQAILCTIHQPSASIFEK-FDRLLLLK  183 (192)
T ss_pred             cCCHHHhHHHHHHHHHhcCCcEEEEeCCCcCCCHHHHHHHHHHHHHHH--HcCCEEEEEEcCChHHHHhh-CCEEEEEc
Confidence            233344455567888888999999998732      233444443332  246789999999763 3333 45555543

PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]

Probab=98.68  E-value=1.2e-07  Score=69.03  Aligned_cols=60  Identities=12%  Similarity=0.183  Sum_probs=42.6

Q ss_pred             ccchhhhHHHHHHHhCCceEEEEEeCC----CCH--HHHHHhhcCCCCCCCCcEEEEEeCCchhhhcc
Q 039455          114 IWDVHKGINLIRWRLCRKRVLVVLDDV----DQL--EQLQALAGNHDWFGFGSRIIITTRDEHVLKGH  175 (216)
Q Consensus       114 ~~~~~~~~~~l~~~l~~~~~llvlDd~----~~~--~~~~~l~~~~~~~~~~~~il~tsr~~~~~~~~  175 (216)
                      .+..++....+++++-++|-+|+=|+.    |-.  ..+-.++..++  ..|.+||++||+.++.+.+
T Consensus       138 LSGGEQQRvaIARAiV~~P~vLlADEPTGNLDp~~s~~im~lfeein--r~GtTVl~ATHd~~lv~~~  203 (223)
T COG2884         138 LSGGEQQRVAIARAIVNQPAVLLADEPTGNLDPDLSWEIMRLFEEIN--RLGTTVLMATHDLELVNRM  203 (223)
T ss_pred             cCchHHHHHHHHHHHccCCCeEeecCCCCCCChHHHHHHHHHHHHHh--hcCcEEEEEeccHHHHHhc
Confidence            344555666789999999999999966    222  22333344444  4689999999999988876

>TIGR01188 drrA daunorubicin resistance ABC transporter ATP-binding subunit

Probab=98.67  E-value=1.4e-07  Score=75.30  Aligned_cols=52  Identities=15%  Similarity=0.046  Sum_probs=35.4

Q ss_pred             HHHHHHHhCCceEEEEEeCCC------CHHHHHHhhcCCCCCCCCcEEEEEeCCchhhhc
Q 039455          121 INLIRWRLCRKRVLVVLDDVD------QLEQLQALAGNHDWFGFGSRIIITTRDEHVLKG  174 (216)
Q Consensus       121 ~~~l~~~l~~~~~llvlDd~~------~~~~~~~l~~~~~~~~~~~~il~tsr~~~~~~~  174 (216)
                      .-.+...+..++-+|++|+.-      ....+..++..+.  ..+..||++||+.+....
T Consensus       132 rv~la~al~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~--~~g~tvi~~sH~~~~~~~  189 (302)
T TIGR01188       132 RLDIAASLIHQPDVLFLDEPTTGLDPRTRRAIWDYIRALK--EEGVTILLTTHYMEEADK  189 (302)
T ss_pred             HHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHH--hCCCEEEEECCCHHHHHH
Confidence            345777888899999999873      2234444444443  346789999999866544

This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc.

>PRK07952 DNA replication protein DnaC; Validated

Probab=98.67  E-value=1.9e-07  Score=71.91  Aligned_cols=49  Identities=22%  Similarity=0.255  Sum_probs=34.2

Q ss_pred             HHHHHHHHhcCCCCeeEEEEEecCCCcHHHHHHHHHHHhcCCCCceEee
Q 039455           35 MEKMNGYLEAGLDDVRFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFL   83 (216)
Q Consensus        35 ~~~l~~~l~~~~~~~~~i~I~G~~GiGKTtL~~~~~~~~~~~~~~~~~~   83 (216)
                      +..+.++...-......++++|++|+|||+|+..++..+......+.++
T Consensus        85 l~~a~~~~~~~~~~~~~~~l~G~~GtGKThLa~aia~~l~~~g~~v~~i  133 (244)
T PRK07952         85 LSKARQYVEEFDGNIASFIFSGKPGTGKNHLAAAICNELLLRGKSVLII  133 (244)
T ss_pred             HHHHHHHHHhhccCCceEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEE
Confidence            3444555443222335899999999999999999999876654555555

>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity

Probab=98.66  E-value=1.7e-07  Score=70.94  Aligned_cols=60  Identities=13%  Similarity=0.177  Sum_probs=38.0

Q ss_pred             HHHHHHHhCCceEEEEEeCCCC------HHHHHHhhcCCCCCCCCcEEEEEeCCchhhhccCCcceEEe
Q 039455          121 INLIRWRLCRKRVLVVLDDVDQ------LEQLQALAGNHDWFGFGSRIIITTRDEHVLKGHGVTNIYKV  183 (216)
Q Consensus       121 ~~~l~~~l~~~~~llvlDd~~~------~~~~~~l~~~~~~~~~~~~il~tsr~~~~~~~~~~~~~~~l  183 (216)
                      .-.+...+..++-++++|+..+      ...+..++..+.  ..+..||++||+.+....+ ++..+.+
T Consensus       136 rl~la~al~~~p~~lllDEP~~~LD~~~~~~~~~~l~~~~--~~~~tii~~sH~~~~~~~~-~d~i~~l  201 (210)
T cd03269         136 KVQFIAAVIHDPELLILDEPFSGLDPVNVELLKDVIRELA--RAGKTVILSTHQMELVEEL-CDRVLLL  201 (210)
T ss_pred             HHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHH--HCCCEEEEECCCHHHHHHh-hhEEEEE
Confidence            3357777788889999998732      233333443332  2467899999998776554 3444444

In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids

Probab=98.66  E-value=1.2e-07  Score=72.38  Aligned_cols=61  Identities=15%  Similarity=0.204  Sum_probs=38.8

Q ss_pred             hHHHHHHHhCCceEEEEEeCCC------CHHHHHHhhcCCCCCCCCcEEEEEeCCchhhhccCCcceEEe
Q 039455          120 GINLIRWRLCRKRVLVVLDDVD------QLEQLQALAGNHDWFGFGSRIIITTRDEHVLKGHGVTNIYKV  183 (216)
Q Consensus       120 ~~~~l~~~l~~~~~llvlDd~~------~~~~~~~l~~~~~~~~~~~~il~tsr~~~~~~~~~~~~~~~l  183 (216)
                      ..-.+...+..++-++++|+.-      ....+..++..+.  ..+..||++||+.+....+ +++.+.+
T Consensus       139 qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~--~~~~tiii~sH~~~~~~~~-~d~i~~l  205 (222)
T cd03224         139 QMLAIARALMSRPKLLLLDEPSEGLAPKIVEEIFEAIRELR--DEGVTILLVEQNARFALEI-ADRAYVL  205 (222)
T ss_pred             HHHHHHHHHhcCCCEEEECCCcccCCHHHHHHHHHHHHHHH--HCCCEEEEEeCCHHHHHHh-ccEEEEe
Confidence            3445677777888999999773      2234444444332  2467899999998765554 3444444

The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.

>PRK12377 putative replication protein; Provisional

Probab=98.65  E-value=8.7e-08  Score=73.98  Aligned_cols=36  Identities=22%  Similarity=0.212  Sum_probs=29.4

Q ss_pred             eeEEEEEecCCCcHHHHHHHHHHHhcCCCCceEeec
Q 039455           49 VRFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLA   84 (216)
Q Consensus        49 ~~~i~I~G~~GiGKTtL~~~~~~~~~~~~~~~~~~~   84 (216)
                      ...++++|++|+|||+||..+++.+......+.++.
T Consensus       101 ~~~l~l~G~~GtGKThLa~AIa~~l~~~g~~v~~i~  136 (248)
T PRK12377        101 CTNFVFSGKPGTGKNHLAAAIGNRLLAKGRSVIVVT  136 (248)
T ss_pred             CCeEEEECCCCCCHHHHHHHHHHHHHHcCCCeEEEE
Confidence            368999999999999999999998776544556554

>PF14516 AAA_35: AAA-like domain

Probab=98.65  E-value=3.1e-06  Score=68.43  Aligned_cols=175  Identities=13%  Similarity=0.096  Sum_probs=98.8

Q ss_pred             CCCcccccccchhHHHHHHHHHhcCCCCeeEEEEEecCCCcHHHHHHHHHHHhcCCCCceEeecccccccc--ccCchHH
Q 039455           21 FPSAVDGLVGIASRMEKMNGYLEAGLDDVRFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLANVREVSV--TRGLVPL   98 (216)
Q Consensus        21 ~~~~~~~~vgR~~~~~~l~~~l~~~~~~~~~i~I~G~~GiGKTtL~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~   98 (216)
                      .|...+.+|.|...-+++.+.+...   +..+.|.||..+|||+|+..+...+++.--.+++++ +.....  ..+...+
T Consensus         6 ~~~~~~~Yi~R~~~e~~~~~~i~~~---G~~~~I~apRq~GKTSll~~l~~~l~~~~~~~v~id-~~~~~~~~~~~~~~f   81 (331)
T PF14516_consen    6 LPLDSPFYIERPPAEQECYQEIVQP---GSYIRIKAPRQMGKTSLLLRLLERLQQQGYRCVYID-LQQLGSAIFSDLEQF   81 (331)
T ss_pred             CCCCCCcccCchHHHHHHHHHHhcC---CCEEEEECcccCCHHHHHHHHHHHHHHCCCEEEEEE-eecCCCcccCCHHHH
Confidence            3556778899996666666666532   479999999999999999999988765544455554 332221  2334444


Q ss_pred             HHHHHHHHHhhccccc----------cchhhhHHHHHHHh-C--CceEEEEEeCCCCHH-------HHHHhhcCCCCC--
Q 039455           99 QEQLLSEVLMERNLII----------WDVHKGINLIRWRL-C--RKRVLVVLDDVDQLE-------QLQALAGNHDWF--  156 (216)
Q Consensus        99 ~~~l~~~~~~~~~~~~----------~~~~~~~~~l~~~l-~--~~~~llvlDd~~~~~-------~~~~l~~~~~~~--  156 (216)
                      ...++..+........          .........+.+.+ .  +++++|+||+++.+-       ++-.++......  
T Consensus        82 ~~~~~~~i~~~L~l~~~l~~~w~~~~~~~~~~~~~~~~~ll~~~~~~lVL~iDEiD~l~~~~~~~~dF~~~LR~~~~~~~  161 (331)
T PF14516_consen   82 LRWFCEEISRQLKLDEKLDEYWDEEIGSKISCTEYFEEYLLKQIDKPLVLFIDEIDRLFEYPQIADDFFGLLRSWYEQRK  161 (331)
T ss_pred             HHHHHHHHHHHcCCChhHHHHHHHhcCChhhHHHHHHHHHHhcCCCCEEEEEechhhhccCcchHHHHHHHHHHHHHhcc
Confidence            5555544433322111          11112233343332 2  579999999997542       222222111000  


Q ss_pred             -C---CCcEEEEEeC-Cchhhhc-----cCCcceEEecCCChHHHHHHHhhhh
Q 039455          157 -G---FGSRIIITTR-DEHVLKG-----HGVTNIYKVRGLDYVEALQLFHLKV  199 (216)
Q Consensus       157 -~---~~~~il~tsr-~~~~~~~-----~~~~~~~~l~~l~~~~~~~ll~~~~  199 (216)
                       .   ...++++... .......     ++....++|++|+.+|...|++++-
T Consensus       162 ~~~~~~~L~li~~~~t~~~~~~~~~~SPFNIg~~i~L~~Ft~~ev~~L~~~~~  214 (331)
T PF14516_consen  162 NNPIWQKLRLILAGSTEDYIILDINQSPFNIGQPIELPDFTPEEVQELAQRYG  214 (331)
T ss_pred             cCcccceEEEEEecCcccccccCCCCCCcccccceeCCCCCHHHHHHHHHhhh
Confidence             0   1122222222 1111111     2345689999999999999998764

>PRK06835 DNA replication protein DnaC; Validated

Probab=98.65  E-value=1.5e-07  Score=75.70  Aligned_cols=36  Identities=22%  Similarity=0.247  Sum_probs=29.7

Q ss_pred             eeEEEEEecCCCcHHHHHHHHHHHhcCCCCceEeec
Q 039455           49 VRFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLA   84 (216)
Q Consensus        49 ~~~i~I~G~~GiGKTtL~~~~~~~~~~~~~~~~~~~   84 (216)
                      ...+.++|++|+|||+|+..+++.+......+.|++
T Consensus       183 ~~~Lll~G~~GtGKThLa~aIa~~l~~~g~~V~y~t  218 (329)
T PRK06835        183 NENLLFYGNTGTGKTFLSNCIAKELLDRGKSVIYRT  218 (329)
T ss_pred             CCcEEEECCCCCcHHHHHHHHHHHHHHCCCeEEEEE
Confidence            378999999999999999999998766555566664

>PRK11248 tauB taurine transporter ATP-binding subunit; Provisional

Probab=98.65  E-value=1.8e-07  Score=72.95  Aligned_cols=61  Identities=21%  Similarity=0.102  Sum_probs=38.4

Q ss_pred             HHHHHHHhCCceEEEEEeCCCC------HHHHHHhhcCCCCCCCCcEEEEEeCCchhhhccCCcceEEe
Q 039455          121 INLIRWRLCRKRVLVVLDDVDQ------LEQLQALAGNHDWFGFGSRIIITTRDEHVLKGHGVTNIYKV  183 (216)
Q Consensus       121 ~~~l~~~l~~~~~llvlDd~~~------~~~~~~l~~~~~~~~~~~~il~tsr~~~~~~~~~~~~~~~l  183 (216)
                      .-.+...+..++-++++|+.-+      ...+..++..+.. ..+..||++||+.+....+ ++..+.+
T Consensus       136 rl~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~-~~g~tviivsH~~~~~~~~-~d~i~~l  202 (255)
T PRK11248        136 RVGIARALAANPQLLLLDEPFGALDAFTREQMQTLLLKLWQ-ETGKQVLLITHDIEEAVFM-ATELVLL  202 (255)
T ss_pred             HHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHH-hcCCEEEEEeCCHHHHHHh-CCEEEEE
Confidence            4457777788899999998732      2334444433210 2367899999998776554 3444444

>TIGR02903 spore_lon_C ATP-dependent protease, Lon family

Probab=98.65  E-value=3.1e-07  Score=79.87  Aligned_cols=51  Identities=25%  Similarity=0.353  Sum_probs=40.7

Q ss_pred             CCcccccccchhHHHHHHHHHhcCCCCeeEEEEEecCCCcHHHHHHHHHHHhc
Q 039455           22 PSAVDGLVGIASRMEKMNGYLEAGLDDVRFIGICGMGGIGKTTLAKVLYNTLK   74 (216)
Q Consensus        22 ~~~~~~~vgR~~~~~~l~~~l~~~~~~~~~i~I~G~~GiGKTtL~~~~~~~~~   74 (216)
                      |..-+.++|++..++.+.+.+...  ....++|+||+|+||||||+.+.+..+
T Consensus       150 p~~~~~iiGqs~~~~~l~~~ia~~--~~~~vlL~Gp~GtGKTTLAr~i~~~~~  200 (615)
T TIGR02903       150 PRAFSEIVGQERAIKALLAKVASP--FPQHIILYGPPGVGKTTAARLALEEAK  200 (615)
T ss_pred             cCcHHhceeCcHHHHHHHHHHhcC--CCCeEEEECCCCCCHHHHHHHHHHhhh
Confidence            344567899999999987776532  346799999999999999999987653

Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.

>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]

Probab=98.65  E-value=5.9e-07  Score=69.33  Aligned_cols=162  Identities=16%  Similarity=0.189  Sum_probs=93.8

Q ss_pred             CCcccccccchhHHHHHHHHHhcC---CCCeeEEEEEecCCCcHHHHHHHHHHHhcCCCCceEeeccccccccccCchHH
Q 039455           22 PSAVDGLVGIASRMEKMNGYLEAG---LDDVRFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLANVREVSVTRGLVPL   98 (216)
Q Consensus        22 ~~~~~~~vgR~~~~~~l~~~l~~~---~~~~~~i~I~G~~GiGKTtL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   98 (216)
                      |..-.+|+|.+...+.|.-++...   ....-.+.++||+|.||||||..+++....++...      +     -....-
T Consensus        22 P~~l~efiGQ~~vk~~L~ifI~AAk~r~e~lDHvLl~GPPGlGKTTLA~IIA~Emgvn~k~t------s-----Gp~leK   90 (332)
T COG2255          22 PKTLDEFIGQEKVKEQLQIFIKAAKKRGEALDHVLLFGPPGLGKTTLAHIIANELGVNLKIT------S-----GPALEK   90 (332)
T ss_pred             cccHHHhcChHHHHHHHHHHHHHHHhcCCCcCeEEeeCCCCCcHHHHHHHHHHHhcCCeEec------c-----cccccC
Confidence            445678999999999888877632   33456999999999999999999999875442110      0     011111


Q ss_pred             HHHHHHHHHhhccccccchhhhHHHHHHHhCCceEEEEEeCCCCHH---------HHHHhhcCCC------------CCC
Q 039455           99 QEQLLSEVLMERNLIIWDVHKGINLIRWRLCRKRVLVVLDDVDQLE---------QLQALAGNHD------------WFG  157 (216)
Q Consensus        99 ~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~llvlDd~~~~~---------~~~~l~~~~~------------~~~  157 (216)
                      ..+++.-+                  .. + ...-+|++|+++.+.         .++++.....            ...
T Consensus        91 ~gDlaaiL------------------t~-L-e~~DVLFIDEIHrl~~~vEE~LYpaMEDf~lDI~IG~gp~Arsv~ldLp  150 (332)
T COG2255          91 PGDLAAIL------------------TN-L-EEGDVLFIDEIHRLSPAVEEVLYPAMEDFRLDIIIGKGPAARSIRLDLP  150 (332)
T ss_pred             hhhHHHHH------------------hc-C-CcCCeEEEehhhhcChhHHHHhhhhhhheeEEEEEccCCccceEeccCC
Confidence            11111111                  11 1 122388889886441         1222211100            001


Q ss_pred             CCcEEEEEeCCchhhhccC--CcceEEecCCChHHHHHHHhhhhcC--CCCCchhHhhhcc
Q 039455          158 FGSRIIITTRDEHVLKGHG--VTNIYKVRGLDYVEALQLFHLKVSK--GKQPTDDRVELSK  214 (216)
Q Consensus       158 ~~~~il~tsr~~~~~~~~~--~~~~~~l~~l~~~~~~~ll~~~~~~--~~~~~~~~~~l~~  214 (216)
                      +-.-|=.|||...+.+-+.  .....+++-.+.+|..+++.+.+..  -...++...+|++
T Consensus       151 pFTLIGATTr~G~lt~PLrdRFGi~~rlefY~~~eL~~Iv~r~a~~l~i~i~~~~a~eIA~  211 (332)
T COG2255         151 PFTLIGATTRAGMLTNPLRDRFGIIQRLEFYTVEELEEIVKRSAKILGIEIDEEAALEIAR  211 (332)
T ss_pred             CeeEeeeccccccccchhHHhcCCeeeeecCCHHHHHHHHHHHHHHhCCCCChHHHHHHHH
Confidence            1223336888664433321  3567889999999999999887633  3345566666664

>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only]

Probab=98.64  E-value=9.1e-07  Score=67.57  Aligned_cols=154  Identities=21%  Similarity=0.209  Sum_probs=91.0

Q ss_pred             ccccccchhHHHH---HHHHHhcC----CCCeeEEEEEecCCCcHHHHHHHHHHHhcCCCCceEeeccccccccccCchH
Q 039455           25 VDGLVGIASRMEK---MNGYLEAG----LDDVRFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLANVREVSVTRGLVP   97 (216)
Q Consensus        25 ~~~~vgR~~~~~~---l~~~l~~~----~~~~~~i~I~G~~GiGKTtL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   97 (216)
                      -++.+|.++..+.   |..+|..+    .=..+.|..+||+|+|||.+|+++++..+-.+  ...-              
T Consensus       120 ~ddViGqEeAK~kcrli~~yLenPe~Fg~WAPknVLFyGppGTGKTm~Akalane~kvp~--l~vk--------------  183 (368)
T COG1223         120 LDDVIGQEEAKRKCRLIMEYLENPERFGDWAPKNVLFYGPPGTGKTMMAKALANEAKVPL--LLVK--------------  183 (368)
T ss_pred             HhhhhchHHHHHHHHHHHHHhhChHHhcccCcceeEEECCCCccHHHHHHHHhcccCCce--EEec--------------
Confidence            4567888876554   56677644    12367999999999999999999998754321  1110              


Q ss_pred             HHHHHHHHHHhhccccccchhhhHHHHHHHhCCceEEEEEeCCCCH--------------HHHHHhhcCCCC--CCCCcE
Q 039455           98 LQEQLLSEVLMERNLIIWDVHKGINLIRWRLCRKRVLVVLDDVDQL--------------EQLQALAGNHDW--FGFGSR  161 (216)
Q Consensus        98 ~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~llvlDd~~~~--------------~~~~~l~~~~~~--~~~~~~  161 (216)
                       ..+++....+..      .....+...+.-...+|+++||++|.+              +.+..++-.+.-  .+.|..
T Consensus       184 -at~liGehVGdg------ar~Ihely~rA~~~aPcivFiDE~DAiaLdRryQelRGDVsEiVNALLTelDgi~eneGVv  256 (368)
T COG1223         184 -ATELIGEHVGDG------ARRIHELYERARKAAPCIVFIDELDAIALDRRYQELRGDVSEIVNALLTELDGIKENEGVV  256 (368)
T ss_pred             -hHHHHHHHhhhH------HHHHHHHHHHHHhcCCeEEEehhhhhhhhhhhHHHhcccHHHHHHHHHHhccCcccCCceE
Confidence             112222111110      111122223333457999999988644              223445444322  234555


Q ss_pred             EEEEeCCchhhhcc---CCcceEEecCCChHHHHHHHhhhhcC
Q 039455          162 IIITTRDEHVLKGH---GVTNIYKVRGLDYVEALQLFHLKVSK  201 (216)
Q Consensus       162 il~tsr~~~~~~~~---~~~~~~~l~~l~~~~~~~ll~~~~~~  201 (216)
                      .|.+|..+++++..   .....+++.--+++|..+++..++-.
T Consensus       257 tIaaTN~p~~LD~aiRsRFEeEIEF~LP~~eEr~~ile~y~k~  299 (368)
T COG1223         257 TIAATNRPELLDPAIRSRFEEEIEFKLPNDEERLEILEYYAKK  299 (368)
T ss_pred             EEeecCChhhcCHHHHhhhhheeeeeCCChHHHHHHHHHHHHh
Confidence            56666655543331   23567888889999999999988744

>COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms]

Probab=98.64  E-value=1.6e-07  Score=74.59  Aligned_cols=53  Identities=17%  Similarity=0.118  Sum_probs=36.4

Q ss_pred             HHHHHHHhCCceEEEEEeCCC------CHHHHHHhhcCCCCCCCC-cEEEEEeCCchhhhcc
Q 039455          121 INLIRWRLCRKRVLVVLDDVD------QLEQLQALAGNHDWFGFG-SRIIITTRDEHVLKGH  175 (216)
Q Consensus       121 ~~~l~~~l~~~~~llvlDd~~------~~~~~~~l~~~~~~~~~~-~~il~tsr~~~~~~~~  175 (216)
                      .-.+...+..+|-+++||+.-      ....+.+++..+.  ..+ ..|++|||..+....+
T Consensus       144 rl~ia~aL~~~P~lliLDEPt~GLDp~~~~~~~~~l~~l~--~~g~~tvlissH~l~e~~~~  203 (293)
T COG1131         144 RLSIALALLHDPELLILDEPTSGLDPESRREIWELLRELA--KEGGVTILLSTHILEEAEEL  203 (293)
T ss_pred             HHHHHHHHhcCCCEEEECCCCcCCCHHHHHHHHHHHHHHH--hCCCcEEEEeCCcHHHHHHh
Confidence            335778888999999999773      2244455554444  334 6899999998766654

>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota

Probab=98.64  E-value=1.3e-07  Score=71.27  Aligned_cols=61  Identities=18%  Similarity=0.232  Sum_probs=39.5

Q ss_pred             hHHHHHHHhCCceEEEEEeCCC------CHHHHHHhhcCCCCCCCCcEEEEEeCCchhhhccCCcceEEe
Q 039455          120 GINLIRWRLCRKRVLVVLDDVD------QLEQLQALAGNHDWFGFGSRIIITTRDEHVLKGHGVTNIYKV  183 (216)
Q Consensus       120 ~~~~l~~~l~~~~~llvlDd~~------~~~~~~~l~~~~~~~~~~~~il~tsr~~~~~~~~~~~~~~~l  183 (216)
                      ..-.+...+..++-++++|+.-      ..+.+..++..+.  ..+..+|++||+.+....+ ++..+.+
T Consensus       133 qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~--~~~~tii~~sH~~~~~~~~-~d~i~~l  199 (205)
T cd03226         133 QRLAIAAALLSGKDLLIFDEPTSGLDYKNMERVGELIRELA--AQGKAVIVITHDYEFLAKV-CDRVLLL  199 (205)
T ss_pred             HHHHHHHHHHhCCCEEEEeCCCccCCHHHHHHHHHHHHHHH--HCCCEEEEEeCCHHHHHHh-CCEEEEE
Confidence            3445777778889999999873      2234444444332  2467899999998776554 4455544

The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.

>PRK06921 hypothetical protein; Provisional

Probab=98.64  E-value=8.1e-08  Score=75.14  Aligned_cols=37  Identities=24%  Similarity=0.242  Sum_probs=30.0

Q ss_pred             CeeEEEEEecCCCcHHHHHHHHHHHhcCC-CCceEeec
Q 039455           48 DVRFIGICGMGGIGKTTLAKVLYNTLKDQ-FEASSFLA   84 (216)
Q Consensus        48 ~~~~i~I~G~~GiGKTtL~~~~~~~~~~~-~~~~~~~~   84 (216)
                      ....+.++|++|+|||+|+..+++.+.+. ...+.|+.
T Consensus       116 ~~~~l~l~G~~G~GKThLa~aia~~l~~~~g~~v~y~~  153 (266)
T PRK06921        116 RKNSIALLGQPGSGKTHLLTAAANELMRKKGVPVLYFP  153 (266)
T ss_pred             CCCeEEEECCCCCcHHHHHHHHHHHHhhhcCceEEEEE
Confidence            35789999999999999999999987655 45556654

>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters

Probab=98.63  E-value=2.4e-07  Score=70.19  Aligned_cols=63  Identities=17%  Similarity=0.186  Sum_probs=40.5

Q ss_pred             hhHHHHHHHhCCceEEEEEeCCCC------HHHHHHhhcCCCCCCCCcEEEEEeCCchhhhccCCcceEEec
Q 039455          119 KGINLIRWRLCRKRVLVVLDDVDQ------LEQLQALAGNHDWFGFGSRIIITTRDEHVLKGHGVTNIYKVR  184 (216)
Q Consensus       119 ~~~~~l~~~l~~~~~llvlDd~~~------~~~~~~l~~~~~~~~~~~~il~tsr~~~~~~~~~~~~~~~l~  184 (216)
                      ...-.+...+..++-++++|+.-+      ...+..++..+.  ..+..+|++||+.+....+ ++..+.+.
T Consensus       138 ~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~--~~~~tvi~~sH~~~~~~~~-~d~i~~l~  206 (213)
T cd03235         138 QQRVLLARALVQDPDLLLLDEPFAGVDPKTQEDIYELLRELR--REGMTILVVTHDLGLVLEY-FDRVLLLN  206 (213)
T ss_pred             HHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHH--hcCCEEEEEeCCHHHHHHh-cCEEEEEc
Confidence            334457777888899999998732      233444443332  2467899999998876654 45555543

This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.

>cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance

Probab=98.63  E-value=2.8e-07  Score=69.63  Aligned_cols=60  Identities=17%  Similarity=0.148  Sum_probs=38.7

Q ss_pred             HHHHHHHhCCceEEEEEeCCC------CHHHHHHhhcCCCCCCCCcEEEEEeCCchhhhccCCcceEEe
Q 039455          121 INLIRWRLCRKRVLVVLDDVD------QLEQLQALAGNHDWFGFGSRIIITTRDEHVLKGHGVTNIYKV  183 (216)
Q Consensus       121 ~~~l~~~l~~~~~llvlDd~~------~~~~~~~l~~~~~~~~~~~~il~tsr~~~~~~~~~~~~~~~l  183 (216)
                      .-.+...+..++-++++|+.-      ..+.+..++..+.  ..+..+|++||+.+....+ ++..+.+
T Consensus       134 rv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~--~~~~tii~~tH~~~~~~~~-~d~v~~l  199 (208)
T cd03268         134 RLGIALALLGNPDLLILDEPTNGLDPDGIKELRELILSLR--DQGITVLISSHLLSEIQKV-ADRIGII  199 (208)
T ss_pred             HHHHHHHHhcCCCEEEECCCcccCCHHHHHHHHHHHHHHH--HCCCEEEEEcCCHHHHHHh-cCEEEEE
Confidence            345777778888999999873      2233444444332  2467899999998876654 3444444

Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.

>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup

Probab=98.63  E-value=1.8e-07  Score=70.91  Aligned_cols=62  Identities=19%  Similarity=0.168  Sum_probs=38.8

Q ss_pred             hHHHHHHHhCCceEEEEEeCCCC------HHHHHHhhcCCCCCCCCcEEEEEeCCchhhhccCCcceEEe
Q 039455          120 GINLIRWRLCRKRVLVVLDDVDQ------LEQLQALAGNHDWFGFGSRIIITTRDEHVLKGHGVTNIYKV  183 (216)
Q Consensus       120 ~~~~l~~~l~~~~~llvlDd~~~------~~~~~~l~~~~~~~~~~~~il~tsr~~~~~~~~~~~~~~~l  183 (216)
                      ..-.+...+..++-++++|+.-.      ...+..++..+.. ..+..||++||+.+....+ ++..+.+
T Consensus       137 qrl~la~al~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~-~~~~tii~~sH~~~~~~~~-~d~v~~l  204 (213)
T cd03259         137 QRVALARALAREPSLLLLDEPLSALDAKLREELREELKELQR-ELGITTIYVTHDQEEALAL-ADRIAVM  204 (213)
T ss_pred             HHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHH-HcCCEEEEEecCHHHHHHh-cCEEEEE
Confidence            34457778888899999998732      2333333333220 1367899999998776554 4455544

This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>KOG2543 consensus Origin recognition complex, subunit 5 [Replication, recombination and repair]

Probab=98.63  E-value=1.1e-06  Score=70.30  Aligned_cols=170  Identities=17%  Similarity=0.188  Sum_probs=104.4

Q ss_pred             cccccccchhHHHHHHHHHhcCCCC-eeEEEEEecCCCcHHHHHHHHHHHhcCCCCceEeeccccccccccCchHHHHHH
Q 039455           24 AVDGLVGIASRMEKMNGYLEAGLDD-VRFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLANVREVSVTRGLVPLQEQL  102 (216)
Q Consensus        24 ~~~~~vgR~~~~~~l~~~l~~~~~~-~~~i~I~G~~GiGKTtL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  102 (216)
                      ..+.+.+|+.++..+..++...... +..+.|+|.+|+|||.+++.+......+   ..|+.+..    -..+....+.+
T Consensus         4 l~~~v~~Re~qi~~L~~Llg~~~~~~PS~~~iyG~sgTGKT~~~r~~l~~~n~~---~vw~n~~e----cft~~~lle~I   76 (438)
T KOG2543|consen    4 LEPNVPCRESQIRRLKSLLGNNSCTIPSIVHIYGHSGTGKTYLVRQLLRKLNLE---NVWLNCVE----CFTYAILLEKI   76 (438)
T ss_pred             cccCccchHHHHHHHHHHhCCCCcccceeEEEeccCCCchhHHHHHHHhhcCCc---ceeeehHH----hccHHHHHHHH
Confidence            4567899999999999999876553 4556999999999999999999877433   46665332    35666677777


Q ss_pred             HHHHH-hhccccc-----cchhhhHHHHHH--HhC--CceEEEEEeCCCCHHHHHHh-----hcCCCCC-CCCcEEEEEe
Q 039455          103 LSEVL-MERNLII-----WDVHKGINLIRW--RLC--RKRVLVVLDDVDQLEQLQAL-----AGNHDWF-GFGSRIIITT  166 (216)
Q Consensus       103 ~~~~~-~~~~~~~-----~~~~~~~~~l~~--~l~--~~~~llvlDd~~~~~~~~~l-----~~~~~~~-~~~~~il~ts  166 (216)
                      +.... ...+...     ..+......+.+  ...  ++.++||||+++...++...     +..+... -+...|+++.
T Consensus        77 L~~~~~~d~dg~~~~~~~en~~d~i~~l~q~~~~t~~d~~~~liLDnad~lrD~~a~ll~~l~~L~el~~~~~i~iils~  156 (438)
T KOG2543|consen   77 LNKSQLADKDGDKVEGDAENFSDFIYLLVQWPAATNRDQKVFLILDNADALRDMDAILLQCLFRLYELLNEPTIVIILSA  156 (438)
T ss_pred             HHHhccCCCchhhhhhHHHHHHHHHHHHHhhHHhhccCceEEEEEcCHHhhhccchHHHHHHHHHHHHhCCCceEEEEec
Confidence            77763 2221111     111222333333  222  35899999999876543222     1111111 2344455444


Q ss_pred             CCc--hhhhccC--CcceEEecCCChHHHHHHHhhhhc
Q 039455          167 RDE--HVLKGHG--VTNIYKVRGLDYVEALQLFHLKVS  200 (216)
Q Consensus       167 r~~--~~~~~~~--~~~~~~l~~l~~~~~~~ll~~~~~  200 (216)
                      ...  .+..+.+  +.-.+.++..+.++...++.+.-.
T Consensus       157 ~~~e~~y~~n~g~~~i~~l~fP~Ys~~e~~~Il~~~~p  194 (438)
T KOG2543|consen  157 PSCEKQYLINTGTLEIVVLHFPQYSVEETQVILSRDNP  194 (438)
T ss_pred             cccHHHhhcccCCCCceEEecCCCCHHHHHHHHhcCCc
Confidence            432  2333233  345677888999999999886544

>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota

Probab=98.63  E-value=1.4e-07  Score=71.45  Aligned_cols=61  Identities=21%  Similarity=0.182  Sum_probs=39.9

Q ss_pred             hHHHHHHHhCCceEEEEEeCCC------CHHHHHHhhcCCCCCCCCcEEEEEeCCchhhhccCCcceEEe
Q 039455          120 GINLIRWRLCRKRVLVVLDDVD------QLEQLQALAGNHDWFGFGSRIIITTRDEHVLKGHGVTNIYKV  183 (216)
Q Consensus       120 ~~~~l~~~l~~~~~llvlDd~~------~~~~~~~l~~~~~~~~~~~~il~tsr~~~~~~~~~~~~~~~l  183 (216)
                      ..-.+...+..++-++++|+.-      ..+.+..++..+.  ..+..+|++||+.+....+ +++.+.+
T Consensus       141 qrv~laral~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~--~~~~tvi~~sH~~~~~~~~-~d~i~~l  207 (211)
T cd03225         141 QRVAIAGVLAMDPDILLLDEPTAGLDPAGRRELLELLKKLK--AEGKTIIIVTHDLDLLLEL-ADRVIVL  207 (211)
T ss_pred             HHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHH--HcCCEEEEEeCCHHHHHHh-CCEEEEE
Confidence            3445777788888899999873      2233444444333  2367899999998876664 4555554

The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.

>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin

Probab=98.63  E-value=2.8e-07  Score=70.21  Aligned_cols=61  Identities=15%  Similarity=0.124  Sum_probs=38.0

Q ss_pred             HHHHHHHhCCceEEEEEeCCC------CHHHHHHhhcCCCCCCCCcEEEEEeCCchhhhccCCcceEEe
Q 039455          121 INLIRWRLCRKRVLVVLDDVD------QLEQLQALAGNHDWFGFGSRIIITTRDEHVLKGHGVTNIYKV  183 (216)
Q Consensus       121 ~~~l~~~l~~~~~llvlDd~~------~~~~~~~l~~~~~~~~~~~~il~tsr~~~~~~~~~~~~~~~l  183 (216)
                      .-.+...+..++-++++|+.-      ..+.+..++..+.. ..+..+|++||+.+....+ ++..+.+
T Consensus       139 r~~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~~~tvi~~tH~~~~~~~~-~d~i~~l  205 (220)
T cd03265         139 RLEIARSLVHRPEVLFLDEPTIGLDPQTRAHVWEYIEKLKE-EFGMTILLTTHYMEEAEQL-CDRVAII  205 (220)
T ss_pred             HHHHHHHHhcCCCEEEEcCCccCCCHHHHHHHHHHHHHHHH-hcCCEEEEEeCCHHHHHHh-CCEEEEE
Confidence            345777888889999999873      22333343333321 1267899999998776654 3444444

In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>KOG0734 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]

Probab=98.62  E-value=7.5e-07  Score=74.23  Aligned_cols=150  Identities=18%  Similarity=0.235  Sum_probs=79.0

Q ss_pred             ccccchhH---HHHHHHHHhcC-------CCCeeEEEEEecCCCcHHHHHHHHHHHhcCCCCceEeeccccccccccCch
Q 039455           27 GLVGIASR---MEKMNGYLEAG-------LDDVRFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLANVREVSVTRGLV   96 (216)
Q Consensus        27 ~~vgR~~~---~~~l~~~l~~~-------~~~~~~i~I~G~~GiGKTtL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   96 (216)
                      +.-|-++.   ++++.++|..+       +.=++-|.++||+|+|||-||++++++..     +.|+.+.++     .+ 
T Consensus       305 dVkG~DEAK~ELeEiVefLkdP~kftrLGGKLPKGVLLvGPPGTGKTlLARAvAGEA~-----VPFF~~sGS-----EF-  373 (752)
T KOG0734|consen  305 DVKGVDEAKQELEEIVEFLKDPTKFTRLGGKLPKGVLLVGPPGTGKTLLARAVAGEAG-----VPFFYASGS-----EF-  373 (752)
T ss_pred             cccChHHHHHHHHHHHHHhcCcHHhhhccCcCCCceEEeCCCCCchhHHHHHhhcccC-----CCeEecccc-----ch-
Confidence            34556554   44555566533       22357899999999999999999998642     333332222     01 


Q ss_pred             HHHHHHHHHHHhhccccccchhhhHHHHHHHhCCceEEEEEeCCCCH-------------HHHHHhhcCCCCCC--CCcE
Q 039455           97 PLQEQLLSEVLMERNLIIWDVHKGINLIRWRLCRKRVLVVLDDVDQL-------------EQLQALAGNHDWFG--FGSR  161 (216)
Q Consensus        97 ~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~llvlDd~~~~-------------~~~~~l~~~~~~~~--~~~~  161 (216)
                         .+++    ...     ........+...-..-|++|+||++|..             +-+.+++..+.-..  .|.-
T Consensus       374 ---dEm~----VGv-----GArRVRdLF~aAk~~APcIIFIDEiDavG~kR~~~~~~y~kqTlNQLLvEmDGF~qNeGiI  441 (752)
T KOG0734|consen  374 ---DEMF----VGV-----GARRVRDLFAAAKARAPCIIFIDEIDAVGGKRNPSDQHYAKQTLNQLLVEMDGFKQNEGII  441 (752)
T ss_pred             ---hhhh----hcc-----cHHHHHHHHHHHHhcCCeEEEEechhhhcccCCccHHHHHHHHHHHHHHHhcCcCcCCceE
Confidence               1111    100     1112233444445567999999999754             23556655443222  2333


Q ss_pred             EEEEeCCchhhhcc----C-CcceEEecCCChHHHHHHHhhhh
Q 039455          162 IIITTRDEHVLKGH----G-VTNIYKVRGLDYVEALQLFHLKV  199 (216)
Q Consensus       162 il~tsr~~~~~~~~----~-~~~~~~l~~l~~~~~~~ll~~~~  199 (216)
                      ||-+|..++.++..    + .+..+.++.-+..=..++|..+.
T Consensus       442 vigATNfpe~LD~AL~RPGRFD~~v~Vp~PDv~GR~eIL~~yl  484 (752)
T KOG0734|consen  442 VIGATNFPEALDKALTRPGRFDRHVTVPLPDVRGRTEILKLYL  484 (752)
T ss_pred             EEeccCChhhhhHHhcCCCccceeEecCCCCcccHHHHHHHHH
Confidence            34455544433321    2 34555565555444455554443

>TIGR02324 CP_lyasePhnL phosphonate C-P lyase system protein PhnL

Probab=98.62  E-value=2.9e-07  Score=70.31  Aligned_cols=62  Identities=16%  Similarity=0.128  Sum_probs=40.1

Q ss_pred             HHHHHHHhCCceEEEEEeCCCC------HHHHHHhhcCCCCCCCCcEEEEEeCCchhhhccCCcceEEecC
Q 039455          121 INLIRWRLCRKRVLVVLDDVDQ------LEQLQALAGNHDWFGFGSRIIITTRDEHVLKGHGVTNIYKVRG  185 (216)
Q Consensus       121 ~~~l~~~l~~~~~llvlDd~~~------~~~~~~l~~~~~~~~~~~~il~tsr~~~~~~~~~~~~~~~l~~  185 (216)
                      .-.+...+..++-++++|+.-.      ...+..++..+.  ..+..+|++||+.+....+ ++..+.+.|
T Consensus       157 rl~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~--~~g~tii~vsH~~~~~~~~-~d~i~~~~~  224 (224)
T TIGR02324       157 RVNIARGFIADYPILLLDEPTASLDAANRQVVVELIAEAK--ARGAALIGIFHDEEVRELV-ADRVMDVTP  224 (224)
T ss_pred             HHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHH--hcCCEEEEEeCCHHHHHHh-cceeEecCC
Confidence            3356777778888999998732      233444443332  2467899999998777655 456665543

Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se.

>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules

Probab=98.62  E-value=2.5e-07  Score=71.27  Aligned_cols=62  Identities=15%  Similarity=0.083  Sum_probs=38.9

Q ss_pred             hHHHHHHHhCCceEEEEEeCCC------CHHHHHHhhcCCCCCCCCcEEEEEeCCchhhhccCCcceEEe
Q 039455          120 GINLIRWRLCRKRVLVVLDDVD------QLEQLQALAGNHDWFGFGSRIIITTRDEHVLKGHGVTNIYKV  183 (216)
Q Consensus       120 ~~~~l~~~l~~~~~llvlDd~~------~~~~~~~l~~~~~~~~~~~~il~tsr~~~~~~~~~~~~~~~l  183 (216)
                      ..-.+...+..++-++++|+.-      ....+..++..+.. ..+..||++||+.+....+ ++..+.+
T Consensus       143 qrv~ia~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~~~tvi~vsH~~~~~~~~-~d~v~~l  210 (235)
T cd03261         143 KRVALARALALDPELLLYDEPTAGLDPIASGVIDDLIRSLKK-ELGLTSIMVTHDLDTAFAI-ADRIAVL  210 (235)
T ss_pred             HHHHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHH-hcCcEEEEEecCHHHHHHh-cCEEEEE
Confidence            3445777888889999999873      22334444433321 1367899999998766554 3444444

The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>TIGR02673 FtsE cell division ATP-binding protein FtsE

Probab=98.61  E-value=3.4e-07  Score=69.46  Aligned_cols=61  Identities=15%  Similarity=0.188  Sum_probs=39.6

Q ss_pred             hHHHHHHHhCCceEEEEEeCCC------CHHHHHHhhcCCCCCCCCcEEEEEeCCchhhhccCCcceEEe
Q 039455          120 GINLIRWRLCRKRVLVVLDDVD------QLEQLQALAGNHDWFGFGSRIIITTRDEHVLKGHGVTNIYKV  183 (216)
Q Consensus       120 ~~~~l~~~l~~~~~llvlDd~~------~~~~~~~l~~~~~~~~~~~~il~tsr~~~~~~~~~~~~~~~l  183 (216)
                      ..-.+...+..++-++++|+..      ....+..++..+.  ..+..||++||+.+....+ ++..+.+
T Consensus       144 qrl~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~--~~~~tii~~tH~~~~~~~~-~d~i~~l  210 (214)
T TIGR02673       144 QRVAIARAIVNSPPLLLADEPTGNLDPDLSERILDLLKRLN--KRGTTVIVATHDLSLVDRV-AHRVIIL  210 (214)
T ss_pred             HHHHHHHHHhCCCCEEEEeCCcccCCHHHHHHHHHHHHHHH--HcCCEEEEEeCCHHHHHHh-cCEEEEe
Confidence            3445777888889999999873      2233444444332  2467899999998776655 4555544

This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.

>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=98.61  E-value=7.4e-07  Score=75.30  Aligned_cols=171  Identities=19%  Similarity=0.251  Sum_probs=101.1

Q ss_pred             CCCcccccccchhHHH-HHHHHHhcC-----------CCCeeEEEEEecCCCcHHHHHHHHHHHhcCCCCceEeeccccc
Q 039455           21 FPSAVDGLVGIASRME-KMNGYLEAG-----------LDDVRFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLANVRE   88 (216)
Q Consensus        21 ~~~~~~~~vgR~~~~~-~l~~~l~~~-----------~~~~~~i~I~G~~GiGKTtL~~~~~~~~~~~~~~~~~~~~~~~   88 (216)
                      -|...+.=||--.+++ +|.-.+..+           -.-..-|.++||+|+|||-||++++++..-+|     ++. . 
T Consensus       505 VPdVtW~dIGaL~~vR~eL~~aI~~PiK~pd~~k~lGi~~PsGvLL~GPPGCGKTLlAKAVANEag~NF-----isV-K-  577 (802)
T KOG0733|consen  505 VPDVTWDDIGALEEVRLELNMAILAPIKRPDLFKALGIDAPSGVLLCGPPGCGKTLLAKAVANEAGANF-----ISV-K-  577 (802)
T ss_pred             cCCCChhhcccHHHHHHHHHHHHhhhccCHHHHHHhCCCCCCceEEeCCCCccHHHHHHHHhhhccCce-----Eee-c-
Confidence            3444555566655555 454444321           12356899999999999999999999866554     220 0 


Q ss_pred             cccccCchHHHHHHHHHHHhhccccccchhhhHHHHHHHhCCceEEEEEeCCCCH-------------HHHHHhhcCCCC
Q 039455           89 VSVTRGLVPLQEQLLSEVLMERNLIIWDVHKGINLIRWRLCRKRVLVVLDDVDQL-------------EQLQALAGNHDW  155 (216)
Q Consensus        89 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~llvlDd~~~~-------------~~~~~l~~~~~~  155 (216)
                           .     .+++....++      +-......+.++-.+.+++|+||++|.+             .-+.+++-.+.-
T Consensus       578 -----G-----PELlNkYVGE------SErAVR~vFqRAR~saPCVIFFDEiDaL~p~R~~~~s~~s~RvvNqLLtElDG  641 (802)
T KOG0733|consen  578 -----G-----PELLNKYVGE------SERAVRQVFQRARASAPCVIFFDEIDALVPRRSDEGSSVSSRVVNQLLTELDG  641 (802)
T ss_pred             -----C-----HHHHHHHhhh------HHHHHHHHHHHhhcCCCeEEEecchhhcCcccCCCCchhHHHHHHHHHHHhcc
Confidence                 1     1222221111      1112233445555678999999999754             224555544431


Q ss_pred             --CCCCcEEEEEeCCchhhhc--c---CCcceEEecCCChHHHHHHHhhhhcCCC---CCchhHhhhcc
Q 039455          156 --FGFGSRIIITTRDEHVLKG--H---GVTNIYKVRGLDYVEALQLFHLKVSKGK---QPTDDRVELSK  214 (216)
Q Consensus       156 --~~~~~~il~tsr~~~~~~~--~---~~~~~~~l~~l~~~~~~~ll~~~~~~~~---~~~~~~~~l~~  214 (216)
                        ...|..||-+|.-+++...  +   ..+..+-+..-+.++..++|+...-...   .++=++++|++
T Consensus       642 l~~R~gV~viaATNRPDiIDpAiLRPGRlDk~LyV~lPn~~eR~~ILK~~tkn~k~pl~~dVdl~eia~  710 (802)
T KOG0733|consen  642 LEERRGVYVIAATNRPDIIDPAILRPGRLDKLLYVGLPNAEERVAILKTITKNTKPPLSSDVDLDEIAR  710 (802)
T ss_pred             cccccceEEEeecCCCcccchhhcCCCccCceeeecCCCHHHHHHHHHHHhccCCCCCCcccCHHHHhh
Confidence              1245666766665554332  1   2467788888899999999987765322   23346777765

>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane

Probab=98.61  E-value=3.5e-07  Score=69.32  Aligned_cols=60  Identities=8%  Similarity=0.181  Sum_probs=38.8

Q ss_pred             HHHHHHHhCCceEEEEEeCCCC------HHHHHHhhcCCCCCCCCcEEEEEeCCchhhhccCCcceEEe
Q 039455          121 INLIRWRLCRKRVLVVLDDVDQ------LEQLQALAGNHDWFGFGSRIIITTRDEHVLKGHGVTNIYKV  183 (216)
Q Consensus       121 ~~~l~~~l~~~~~llvlDd~~~------~~~~~~l~~~~~~~~~~~~il~tsr~~~~~~~~~~~~~~~l  183 (216)
                      .-.+...+..++-++++|+.-+      .+.+..++..+.  ..+..+|++||+.+....+ ++..+.+
T Consensus       144 rv~laral~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~--~~~~tiiivtH~~~~~~~~-~d~i~~l  209 (214)
T cd03292         144 RVAIARAIVNSPTILIADEPTGNLDPDTTWEIMNLLKKIN--KAGTTVVVATHAKELVDTT-RHRVIAL  209 (214)
T ss_pred             HHHHHHHHHcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHH--HcCCEEEEEeCCHHHHHHh-CCEEEEE
Confidence            3456777788889999998732      233444443332  2467899999998776654 4555544

The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.

>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional

Probab=98.61  E-value=8.9e-07  Score=71.30  Aligned_cols=146  Identities=15%  Similarity=0.101  Sum_probs=78.6

Q ss_pred             CCeeEEEEEecCCCcHHHHHHHHHHHhcCCCCceEeeccccccccccCchHHHHHHHHHHHhhccccccchhhhHHHHHH
Q 039455           47 DDVRFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLANVREVSVTRGLVPLQEQLLSEVLMERNLIIWDVHKGINLIRW  126 (216)
Q Consensus        47 ~~~~~i~I~G~~GiGKTtL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~  126 (216)
                      .-...++|+||+|+|||.+++.++....-.+   +.++ ...+  ...+.--.+..+++++.              ....
T Consensus       146 k~PlgllL~GPPGcGKTllAraiA~elg~~~---i~vs-a~eL--~sk~vGEsEk~IR~~F~--------------~A~~  205 (413)
T PLN00020        146 KVPLILGIWGGKGQGKSFQCELVFKKMGIEP---IVMS-AGEL--ESENAGEPGKLIRQRYR--------------EAAD  205 (413)
T ss_pred             CCCeEEEeeCCCCCCHHHHHHHHHHHcCCCe---EEEE-HHHh--hcCcCCcHHHHHHHHHH--------------HHHH
Confidence            3467999999999999999999999875432   1111 1110  00010001111111111              0111


Q ss_pred             Hh--CCceEEEEEeCCCCH------------HHH--HHhhcCC--------------CCCCCCcEEEEEeCCchhhhc--
Q 039455          127 RL--CRKRVLVVLDDVDQL------------EQL--QALAGNH--------------DWFGFGSRIIITTRDEHVLKG--  174 (216)
Q Consensus       127 ~l--~~~~~llvlDd~~~~------------~~~--~~l~~~~--------------~~~~~~~~il~tsr~~~~~~~--  174 (216)
                      ..  .+++++|+|||+|..            .++  ..++..+              ....++..||.||..++.+..  
T Consensus       206 ~a~~~~aPcVLFIDEIDA~~g~r~~~~~tv~~qiV~~tLLnl~D~p~~v~l~G~w~~~~~~~~V~VIaTTNrpd~LDpAL  285 (413)
T PLN00020        206 IIKKKGKMSCLFINDLDAGAGRFGTTQYTVNNQMVNGTLMNIADNPTNVSLGGDWREKEEIPRVPIIVTGNDFSTLYAPL  285 (413)
T ss_pred             HhhccCCCeEEEEehhhhcCCCCCCCCcchHHHHHHHHHHHHhcCCccccccccccccccCCCceEEEeCCCcccCCHhH
Confidence            11  357999999998632            111  2333211              112345678888877654221  


Q ss_pred             cC---CcceEEecCCChHHHHHHHhhhhcCCCCCchhHhhhcc
Q 039455          175 HG---VTNIYKVRGLDYVEALQLFHLKVSKGKQPTDDRVELSK  214 (216)
Q Consensus       175 ~~---~~~~~~l~~l~~~~~~~ll~~~~~~~~~~~~~~~~l~~  214 (216)
                      +.   .+..  +..-+.++..++++.+.-..+.+..++..|++
T Consensus       286 lRpGRfDk~--i~lPd~e~R~eIL~~~~r~~~l~~~dv~~Lv~  326 (413)
T PLN00020        286 IRDGRMEKF--YWAPTREDRIGVVHGIFRDDGVSREDVVKLVD  326 (413)
T ss_pred             cCCCCCCce--eCCCCHHHHHHHHHHHhccCCCCHHHHHHHHH
Confidence            11   2233  34567788888888776665555566666654

>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif

Probab=98.60  E-value=6.8e-08  Score=71.07  Aligned_cols=37  Identities=24%  Similarity=0.226  Sum_probs=27.6

Q ss_pred             CeeEEEEEecCCCcHHHHHHHHHHHhcCCCCceEeec
Q 039455           48 DVRFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLA   84 (216)
Q Consensus        48 ~~~~i~I~G~~GiGKTtL~~~~~~~~~~~~~~~~~~~   84 (216)
                      +...++++|++|+|||+||..++..+..+...+.|+.
T Consensus        46 ~~~~l~l~G~~G~GKThLa~ai~~~~~~~g~~v~f~~   82 (178)
T PF01695_consen   46 NGENLILYGPPGTGKTHLAVAIANEAIRKGYSVLFIT   82 (178)
T ss_dssp             C--EEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEE
T ss_pred             cCeEEEEEhhHhHHHHHHHHHHHHHhccCCcceeEee
Confidence            4578999999999999999999987665545566654

They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.

>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]

Probab=98.60  E-value=3.2e-07  Score=80.23  Aligned_cols=158  Identities=13%  Similarity=0.141  Sum_probs=93.0

Q ss_pred             ccccccchhHHHHHHHHHhcCCCCeeEEEEEecCCCcHHHHHHHHHHHhcCCCCceEeeccccccccccCchHHHHHHHH
Q 039455           25 VDGLVGIASRMEKMNGYLEAGLDDVRFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLANVREVSVTRGLVPLQEQLLS  104 (216)
Q Consensus        25 ~~~~vgR~~~~~~l~~~l~~~~~~~~~i~I~G~~GiGKTtL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  104 (216)
                      .++.+||++|+.+.++.|.....+.++  ++|++|+|||+++.-++.++.+. ....++....-.  ..++    .    
T Consensus       169 lDPvIGRd~EI~r~iqIL~RR~KNNPv--LiGEpGVGKTAIvEGLA~rIv~g-~VP~~L~~~~i~--sLD~----g----  235 (786)
T COG0542         169 LDPVIGRDEEIRRTIQILSRRTKNNPV--LVGEPGVGKTAIVEGLAQRIVNG-DVPESLKDKRIY--SLDL----G----  235 (786)
T ss_pred             CCCCcChHHHHHHHHHHHhccCCCCCe--EecCCCCCHHHHHHHHHHHHhcC-CCCHHHcCCEEE--EecH----H----
Confidence            467999999999999998866444454  67999999999999999987543 111111100000  0000    0    


Q ss_pred             HHHhhccccccchhhhHHHHHHHhC-CceEEEEEeCCCC-----------HHHHHHhhcCCCCCCCCcEEEEEeCCchhh
Q 039455          105 EVLMERNLIIWDVHKGINLIRWRLC-RKRVLVVLDDVDQ-----------LEQLQALAGNHDWFGFGSRIIITTRDEHVL  172 (216)
Q Consensus       105 ~~~~~~~~~~~~~~~~~~~l~~~l~-~~~~llvlDd~~~-----------~~~~~~l~~~~~~~~~~~~il~tsr~~~~~  172 (216)
                      .+..... ..-+++...+.+.+.+. .++.+|+||+++.           .+...-+.+.+.  ....++|-+|...++.
T Consensus       236 ~LvAGak-yRGeFEeRlk~vl~ev~~~~~vILFIDEiHtiVGAG~~~G~a~DAaNiLKPaLA--RGeL~~IGATT~~EYR  312 (786)
T COG0542         236 SLVAGAK-YRGEFEERLKAVLKEVEKSKNVILFIDEIHTIVGAGATEGGAMDAANLLKPALA--RGELRCIGATTLDEYR  312 (786)
T ss_pred             HHhcccc-ccCcHHHHHHHHHHHHhcCCCeEEEEechhhhcCCCcccccccchhhhhHHHHh--cCCeEEEEeccHHHHH
Confidence            0011111 11233444444444443 4589999998742           334444455554  2234556555544443


Q ss_pred             hcc-------CCcceEEecCCChHHHHHHHhhh
Q 039455          173 KGH-------GVTNIYKVRGLDYVEALQLFHLK  198 (216)
Q Consensus       173 ~~~-------~~~~~~~l~~l~~~~~~~ll~~~  198 (216)
                      ..+       ..++.+.+...+.+++..+|+..
T Consensus       313 k~iEKD~AL~RRFQ~V~V~EPs~e~ti~ILrGl  345 (786)
T COG0542         313 KYIEKDAALERRFQKVLVDEPSVEDTIAILRGL  345 (786)
T ss_pred             HHhhhchHHHhcCceeeCCCCCHHHHHHHHHHH
Confidence            222       25789999999999999999753

>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively

Probab=98.60  E-value=2.4e-07  Score=70.56  Aligned_cols=62  Identities=16%  Similarity=0.040  Sum_probs=38.5

Q ss_pred             hHHHHHHHhCCceEEEEEeCCCC------HHHHHHhhcCCCCCCCCcEEEEEeCCchhhhccCCcceEEe
Q 039455          120 GINLIRWRLCRKRVLVVLDDVDQ------LEQLQALAGNHDWFGFGSRIIITTRDEHVLKGHGVTNIYKV  183 (216)
Q Consensus       120 ~~~~l~~~l~~~~~llvlDd~~~------~~~~~~l~~~~~~~~~~~~il~tsr~~~~~~~~~~~~~~~l  183 (216)
                      ..-.+...+..++-++++|+.-+      ...+..++..+.. ..+..||++||+.+....+ ++..+.+
T Consensus       138 qrl~la~al~~~p~lllLDEPt~~LD~~~~~~~~~~l~~~~~-~~~~tiii~sH~~~~~~~~-~d~i~~l  205 (220)
T cd03293         138 QRVALARALAVDPDVLLLDEPFSALDALTREQLQEELLDIWR-ETGKTVLLVTHDIDEAVFL-ADRVVVL  205 (220)
T ss_pred             HHHHHHHHHHcCCCEEEECCCCCCCCHHHHHHHHHHHHHHHH-HcCCEEEEEecCHHHHHHh-CCEEEEE
Confidence            34457778888899999998732      2333343333210 2357899999998765554 4454444

ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK11124 artP arginine transporter ATP-binding subunit; Provisional

Probab=98.60  E-value=3.2e-07  Score=70.96  Aligned_cols=54  Identities=15%  Similarity=0.159  Sum_probs=35.4

Q ss_pred             hHHHHHHHhCCceEEEEEeCCCC------HHHHHHhhcCCCCCCCCcEEEEEeCCchhhhcc
Q 039455          120 GINLIRWRLCRKRVLVVLDDVDQ------LEQLQALAGNHDWFGFGSRIIITTRDEHVLKGH  175 (216)
Q Consensus       120 ~~~~l~~~l~~~~~llvlDd~~~------~~~~~~l~~~~~~~~~~~~il~tsr~~~~~~~~  175 (216)
                      ....+...+..++-++++|+..+      ...+..++..+.  ..+..+|++||+.+....+
T Consensus       148 qrv~laral~~~p~llilDEPt~~LD~~~~~~l~~~l~~~~--~~~~tii~~sh~~~~~~~~  207 (242)
T PRK11124        148 QRVAIARALMMEPQVLLFDEPTAALDPEITAQIVSIIRELA--ETGITQVIVTHEVEVARKT  207 (242)
T ss_pred             HHHHHHHHHhcCCCEEEEcCCCCcCCHHHHHHHHHHHHHHH--HcCCEEEEEeCCHHHHHHh
Confidence            34457777888889999998732      233334443332  2467899999998776554

>PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional

Probab=98.60  E-value=2.3e-07  Score=72.36  Aligned_cols=28  Identities=29%  Similarity=0.489  Sum_probs=24.4

Q ss_pred             CCeeEEEEEecCCCcHHHHHHHHHHHhc
Q 039455           47 DDVRFIGICGMGGIGKTTLAKVLYNTLK   74 (216)
Q Consensus        47 ~~~~~i~I~G~~GiGKTtL~~~~~~~~~   74 (216)
                      ..+..++|.|++|+|||||++.+++...
T Consensus        36 ~~Ge~~~I~G~NGsGKSTLlk~l~Gl~~   63 (257)
T PRK11247         36 PAGQFVAVVGRSGCGKSTLLRLLAGLET   63 (257)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence            4568999999999999999999998643

>cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component

Probab=98.60  E-value=2.3e-07  Score=69.65  Aligned_cols=122  Identities=20%  Similarity=0.144  Sum_probs=67.6

Q ss_pred             CCeeEEEEEecCCCcHHHHHHHHHHHhc-CCCCceEeeccc--cc-------------cccccCc--hHHHHHHHHHHHh
Q 039455           47 DDVRFIGICGMGGIGKTTLAKVLYNTLK-DQFEASSFLANV--RE-------------VSVTRGL--VPLQEQLLSEVLM  108 (216)
Q Consensus        47 ~~~~~i~I~G~~GiGKTtL~~~~~~~~~-~~~~~~~~~~~~--~~-------------~~~~~~~--~~~~~~l~~~~~~  108 (216)
                      ..+..++|.|++|+|||||++.+++... ......+.+...  ..             .......  .....+++    .
T Consensus        24 ~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~~~~l----~   99 (200)
T cd03217          24 KKGEVHALMGPNGSGKSTLAKTIMGHPKYEVTEGEILFKGEDITDLPPEERARLGIFLAFQYPPEIPGVKNADFL----R   99 (200)
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHhCCCcCCCCccEEEECCEECCcCCHHHHhhCcEEEeecChhhccCccHHHHH----h
Confidence            3468999999999999999999998631 111222222100  00             0000000  00111111    1


Q ss_pred             hccccccchhhhHHHHHHHhCCceEEEEEeCCC------CHHHHHHhhcCCCCCCCCcEEEEEeCCchhhhc
Q 039455          109 ERNLIIWDVHKGINLIRWRLCRKRVLVVLDDVD------QLEQLQALAGNHDWFGFGSRIIITTRDEHVLKG  174 (216)
Q Consensus       109 ~~~~~~~~~~~~~~~l~~~l~~~~~llvlDd~~------~~~~~~~l~~~~~~~~~~~~il~tsr~~~~~~~  174 (216)
                      ......+..+...-.+...+..++-++++|+.-      ..+.+..++..+.  ..+..+|++||+.+....
T Consensus       100 ~~~~~LS~G~~qrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~L~~~~--~~~~tiii~sh~~~~~~~  169 (200)
T cd03217         100 YVNEGFSGGEKKRNEILQLLLLEPDLAILDEPDSGLDIDALRLVAEVINKLR--EEGKSVLIITHYQRLLDY  169 (200)
T ss_pred             hccccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHH--HCCCEEEEEecCHHHHHH
Confidence            111123334444556888888999999999873      2233444443332  236789999999887664

Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.

>PRK13537 nodulation ABC transporter NodI; Provisional

Probab=98.60  E-value=3.2e-07  Score=73.39  Aligned_cols=52  Identities=15%  Similarity=0.054  Sum_probs=35.8

Q ss_pred             HHHHHHHhCCceEEEEEeCCC------CHHHHHHhhcCCCCCCCCcEEEEEeCCchhhhc
Q 039455          121 INLIRWRLCRKRVLVVLDDVD------QLEQLQALAGNHDWFGFGSRIIITTRDEHVLKG  174 (216)
Q Consensus       121 ~~~l~~~l~~~~~llvlDd~~------~~~~~~~l~~~~~~~~~~~~il~tsr~~~~~~~  174 (216)
                      .-.+...+..++-+++||+..      ....+..++..+.  ..+..||+|||+.+.+..
T Consensus       146 rl~la~aL~~~P~lllLDEPt~gLD~~~~~~l~~~l~~l~--~~g~till~sH~l~e~~~  203 (306)
T PRK13537        146 RLTLARALVNDPDVLVLDEPTTGLDPQARHLMWERLRSLL--ARGKTILLTTHFMEEAER  203 (306)
T ss_pred             HHHHHHHHhCCCCEEEEeCCCcCCCHHHHHHHHHHHHHHH--hCCCEEEEECCCHHHHHH
Confidence            335778888899999999773      2234445554443  347889999999876544

>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively

Probab=98.60  E-value=3.3e-07  Score=69.43  Aligned_cols=60  Identities=8%  Similarity=0.122  Sum_probs=38.7

Q ss_pred             HHHHHHHhCCceEEEEEeCCC------CHHHHHHhhcCCCCCCCCcEEEEEeCCchhhhccCCcceEEe
Q 039455          121 INLIRWRLCRKRVLVVLDDVD------QLEQLQALAGNHDWFGFGSRIIITTRDEHVLKGHGVTNIYKV  183 (216)
Q Consensus       121 ~~~l~~~l~~~~~llvlDd~~------~~~~~~~l~~~~~~~~~~~~il~tsr~~~~~~~~~~~~~~~l  183 (216)
                      .-.+...+..++-++++|+.-      +.+.+..++..+.  ..+..+|++||+.+....+ +++.+.+
T Consensus       143 rv~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~--~~~~tvi~~sh~~~~~~~~-~d~i~~l  208 (213)
T cd03262         143 RVAIARALAMNPKVMLFDEPTSALDPELVGEVLDVMKDLA--EEGMTMVVVTHEMGFAREV-ADRVIFM  208 (213)
T ss_pred             HHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHH--HcCCEEEEEeCCHHHHHHh-CCEEEEE
Confidence            445777778888999999873      2233444444332  2367899999998776554 4455544

Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM

>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE)

Probab=98.59  E-value=4e-07  Score=69.27  Aligned_cols=62  Identities=16%  Similarity=0.226  Sum_probs=40.2

Q ss_pred             hHHHHHHHhCCceEEEEEeCCC------CHHHHHHhhcCCCCCCCCcEEEEEeCCchhhhccCCcceEEec
Q 039455          120 GINLIRWRLCRKRVLVVLDDVD------QLEQLQALAGNHDWFGFGSRIIITTRDEHVLKGHGVTNIYKVR  184 (216)
Q Consensus       120 ~~~~l~~~l~~~~~llvlDd~~------~~~~~~~l~~~~~~~~~~~~il~tsr~~~~~~~~~~~~~~~l~  184 (216)
                      ..-.+...+..++-++++|+.-      ....+..++..+.. ..+..||++||+.+... + ++..+.+.
T Consensus       147 qrv~la~al~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~-~~~~tii~~sH~~~~~~-~-~d~v~~l~  214 (218)
T cd03255         147 QRVAIARALANDPKIILADEPTGNLDSETGKEVMELLRELNK-EAGTTIVVVTHDPELAE-Y-ADRIIELR  214 (218)
T ss_pred             HHHHHHHHHccCCCEEEEcCCcccCCHHHHHHHHHHHHHHHH-hcCCeEEEEECCHHHHh-h-hcEEEEee
Confidence            3445778888899999999873      22344444443321 13678999999987765 3 56665553

They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.

>cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters

Probab=98.59  E-value=2.6e-07  Score=69.48  Aligned_cols=28  Identities=29%  Similarity=0.312  Sum_probs=24.9

Q ss_pred             CCeeEEEEEecCCCcHHHHHHHHHHHhc
Q 039455           47 DDVRFIGICGMGGIGKTTLAKVLYNTLK   74 (216)
Q Consensus        47 ~~~~~i~I~G~~GiGKTtL~~~~~~~~~   74 (216)
                      ..+..++|.|++|+|||||++.+++...
T Consensus        31 ~~Ge~~~i~G~nGsGKSTLl~~l~G~~~   58 (202)
T cd03233          31 KPGEMVLVLGRPGSGCSTLLKALANRTE   58 (202)
T ss_pred             CCCcEEEEECCCCCCHHHHHHHhcccCC
Confidence            4568999999999999999999998765

PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK08058 DNA polymerase III subunit delta'; Validated

Probab=98.59  E-value=3e-06  Score=68.50  Aligned_cols=160  Identities=13%  Similarity=0.034  Sum_probs=86.8

Q ss_pred             cccc-chhHHHHHHHHHhcCCCCeeEEEEEecCCCcHHHHHHHHHHHhcCCC--CceEeeccccccccccCchHHHHHHH
Q 039455           27 GLVG-IASRMEKMNGYLEAGLDDVRFIGICGMGGIGKTTLAKVLYNTLKDQF--EASSFLANVREVSVTRGLVPLQEQLL  103 (216)
Q Consensus        27 ~~vg-R~~~~~~l~~~l~~~~~~~~~i~I~G~~GiGKTtL~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~l~  103 (216)
                      .++| -+...+.|...+..+ .-...+.++||.|+|||++|+.++..+....  .......           ...+..+.
T Consensus         6 ~i~~~q~~~~~~L~~~~~~~-~l~ha~Lf~G~~G~gk~~~a~~la~~l~c~~~~~~~~cg~-----------C~~c~~~~   73 (329)
T PRK08058          6 QLTALQPVVVKMLQNSIAKN-RLSHAYLFEGAKGTGKKATALWLAKSLFCLERNGVEPCGT-----------CTNCKRID   73 (329)
T ss_pred             HHHhhHHHHHHHHHHHHHcC-CCCceEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCc-----------CHHHHHHh
Confidence            4566 666777777777643 3346789999999999999999998653221  0000000           00000000


Q ss_pred             HHHHhhc-----cccccchhhhHHHHHH----HhCCceEEEEEeCCCCH--HHHHHhhcCCCCCCCCcEEEEEeCCch-h
Q 039455          104 SEVLMER-----NLIIWDVHKGINLIRW----RLCRKRVLVVLDDVDQL--EQLQALAGNHDWFGFGSRIIITTRDEH-V  171 (216)
Q Consensus       104 ~~~~~~~-----~~~~~~~~~~~~~l~~----~l~~~~~llvlDd~~~~--~~~~~l~~~~~~~~~~~~il~tsr~~~-~  171 (216)
                      .......     .......+........    ...+++-++|||+++..  +....++..+..-..++.+|++|.+.. +
T Consensus        74 ~~~hpD~~~i~~~~~~i~id~ir~l~~~~~~~~~~~~~kvviI~~a~~~~~~a~NaLLK~LEEPp~~~~~Il~t~~~~~l  153 (329)
T PRK08058         74 SGNHPDVHLVAPDGQSIKKDQIRYLKEEFSKSGVESNKKVYIIEHADKMTASAANSLLKFLEEPSGGTTAILLTENKHQI  153 (329)
T ss_pred             cCCCCCEEEeccccccCCHHHHHHHHHHHhhCCcccCceEEEeehHhhhCHHHHHHHHHHhcCCCCCceEEEEeCChHhC
Confidence            0000000     0000111111111111    12345668999999755  345556655543345666777776542 3


Q ss_pred             hhcc-CCcceEEecCCChHHHHHHHhhh
Q 039455          172 LKGH-GVTNIYKVRGLDYVEALQLFHLK  198 (216)
Q Consensus       172 ~~~~-~~~~~~~l~~l~~~~~~~ll~~~  198 (216)
                      ...+ .....+++++++.++..+.+...
T Consensus       154 l~TIrSRc~~i~~~~~~~~~~~~~L~~~  181 (329)
T PRK08058        154 LPTILSRCQVVEFRPLPPESLIQRLQEE  181 (329)
T ss_pred             cHHHHhhceeeeCCCCCHHHHHHHHHHc
Confidence            3332 23578999999999998888754

>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein

Probab=98.59  E-value=2.9e-07  Score=71.22  Aligned_cols=62  Identities=16%  Similarity=0.101  Sum_probs=38.5

Q ss_pred             hHHHHHHHhCCceEEEEEeCCCC------HHHHHHhhcCCCCCCCCcEEEEEeCCchhhhccCCcceEEe
Q 039455          120 GINLIRWRLCRKRVLVVLDDVDQ------LEQLQALAGNHDWFGFGSRIIITTRDEHVLKGHGVTNIYKV  183 (216)
Q Consensus       120 ~~~~l~~~l~~~~~llvlDd~~~------~~~~~~l~~~~~~~~~~~~il~tsr~~~~~~~~~~~~~~~l  183 (216)
                      ..-.+...+..++-++++|+..+      ...+..++..+.. ..+..||++||+.+....+ ++..+.+
T Consensus       152 qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~~~tiii~tH~~~~~~~~-~d~v~~l  219 (243)
T TIGR02315       152 QRVAIARALAQQPDLILADEPIASLDPKTSKQVMDYLKRINK-EDGITVIINLHQVDLAKKY-ADRIVGL  219 (243)
T ss_pred             HHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHH-HcCCEEEEEeCCHHHHHHh-cCeEEEE
Confidence            34457778888889999998732      2333344433321 1367899999998876554 3444444

Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.

>PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed

Probab=98.59  E-value=2e-07  Score=72.49  Aligned_cols=128  Identities=16%  Similarity=0.170  Sum_probs=66.5

Q ss_pred             CCeeEEEEEecCCCcHHHHHHHHHHHhcCCCCc--------eEeeccccccccc--cCch-----------HHHHHHHHH
Q 039455           47 DDVRFIGICGMGGIGKTTLAKVLYNTLKDQFEA--------SSFLANVREVSVT--RGLV-----------PLQEQLLSE  105 (216)
Q Consensus        47 ~~~~~i~I~G~~GiGKTtL~~~~~~~~~~~~~~--------~~~~~~~~~~~~~--~~~~-----------~~~~~l~~~  105 (216)
                      ..+..++|.|++|+|||||++.+++........        +.++.--......  ....           .....++..
T Consensus        28 ~~Ge~~~I~G~NGsGKSTLl~~i~Gl~~p~~G~i~~~~~~~i~~v~q~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~  107 (251)
T PRK09544         28 KPGKILTLLGPNGAGKSTLVRVVLGLVAPDEGVIKRNGKLRIGYVPQKLYLDTTLPLTVNRFLRLRPGTKKEDILPALKR  107 (251)
T ss_pred             cCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCccCEEEeccccccccccChhHHHHHhccccccHHHHHHHHHH
Confidence            346899999999999999999999865322111        1111100000000  0000           001111111


Q ss_pred             HHhh-----ccccccchhhhHHHHHHHhCCceEEEEEeCCCC------HHHHHHhhcCCCCCCCCcEEEEEeCCchhhhc
Q 039455          106 VLME-----RNLIIWDVHKGINLIRWRLCRKRVLVVLDDVDQ------LEQLQALAGNHDWFGFGSRIIITTRDEHVLKG  174 (216)
Q Consensus       106 ~~~~-----~~~~~~~~~~~~~~l~~~l~~~~~llvlDd~~~------~~~~~~l~~~~~~~~~~~~il~tsr~~~~~~~  174 (216)
                      +...     .....+..+...-.+...+..++-++++|+..+      ...+..++..+.. ..+..||++||+.+....
T Consensus       108 ~gl~~~~~~~~~~LSgGq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~-~~g~tiiivsH~~~~i~~  186 (251)
T PRK09544        108 VQAGHLIDAPMQKLSGGETQRVLLARALLNRPQLLVLDEPTQGVDVNGQVALYDLIDQLRR-ELDCAVLMVSHDLHLVMA  186 (251)
T ss_pred             cCChHHHhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHH-hcCCEEEEEecCHHHHHH
Confidence            1100     001112233344457778888999999998732      2333344433221 126789999999877655


Q ss_pred             c
Q 039455          175 H  175 (216)
Q Consensus       175 ~  175 (216)
                      +
T Consensus       187 ~  187 (251)
T PRK09544        187 K  187 (251)
T ss_pred             h
Confidence            4

>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds

Probab=98.58  E-value=5e-07  Score=68.81  Aligned_cols=59  Identities=17%  Similarity=0.106  Sum_probs=37.9

Q ss_pred             HHHHHHHhCCceEEEEEeCCCC------HHHHHHhhcCCCCCCCCcEEEEEeCCchhhhccCCcceEEe
Q 039455          121 INLIRWRLCRKRVLVVLDDVDQ------LEQLQALAGNHDWFGFGSRIIITTRDEHVLKGHGVTNIYKV  183 (216)
Q Consensus       121 ~~~l~~~l~~~~~llvlDd~~~------~~~~~~l~~~~~~~~~~~~il~tsr~~~~~~~~~~~~~~~l  183 (216)
                      .-.+...+..++-++++|+...      .+.+..++..+.   .+..+|++||+.+....+ ++..+.+
T Consensus       141 rv~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~---~~~tii~~sH~~~~~~~~-~d~i~~l  205 (220)
T cd03263         141 KLSLAIALIGGPSVLLLDEPTSGLDPASRRAIWDLILEVR---KGRSIILTTHSMDEAEAL-CDRIAIM  205 (220)
T ss_pred             HHHHHHHHhcCCCEEEECCCCCCCCHHHHHHHHHHHHHHh---cCCEEEEEcCCHHHHHHh-cCEEEEE
Confidence            3457777888999999998732      233444443332   247899999998876554 3444444

Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.

>TIGR03740 galliderm_ABC gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit

Probab=98.58  E-value=4.5e-07  Score=69.22  Aligned_cols=53  Identities=17%  Similarity=0.190  Sum_probs=35.6

Q ss_pred             HHHHHHHhCCceEEEEEeCCC------CHHHHHHhhcCCCCCCCCcEEEEEeCCchhhhcc
Q 039455          121 INLIRWRLCRKRVLVVLDDVD------QLEQLQALAGNHDWFGFGSRIIITTRDEHVLKGH  175 (216)
Q Consensus       121 ~~~l~~~l~~~~~llvlDd~~------~~~~~~~l~~~~~~~~~~~~il~tsr~~~~~~~~  175 (216)
                      .-.+...+...+-++++|+..      ..+.+..++..+.  ..+..||++||+.+....+
T Consensus       132 rv~laral~~~p~llllDEP~~~LD~~~~~~l~~~L~~~~--~~~~tiii~sH~~~~~~~~  190 (223)
T TIGR03740       132 RLGIAIALLNHPKLLILDEPTNGLDPIGIQELRELIRSFP--EQGITVILSSHILSEVQQL  190 (223)
T ss_pred             HHHHHHHHhcCCCEEEECCCccCCCHHHHHHHHHHHHHHH--HCCCEEEEEcCCHHHHHHh
Confidence            335677778889999999773      2234444444433  2467899999998776544

Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes.

>cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids

Probab=98.58  E-value=4.9e-07  Score=69.42  Aligned_cols=60  Identities=15%  Similarity=0.162  Sum_probs=37.8

Q ss_pred             HHHHHHHhCCceEEEEEeCCC------CHHHHHHhhcCCCCCCCCcEEEEEeCCchhhhccCCcceEEe
Q 039455          121 INLIRWRLCRKRVLVVLDDVD------QLEQLQALAGNHDWFGFGSRIIITTRDEHVLKGHGVTNIYKV  183 (216)
Q Consensus       121 ~~~l~~~l~~~~~llvlDd~~------~~~~~~~l~~~~~~~~~~~~il~tsr~~~~~~~~~~~~~~~l  183 (216)
                      .-.+...+..++-++++|+.-      +.+.+..++..+.  ..+..||++||+.+....+ ++..+.+
T Consensus       141 rl~la~al~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~--~~~~tii~~sH~~~~~~~~-~d~i~~l  206 (232)
T cd03218         141 RVEIARALATNPKFLLLDEPFAGVDPIAVQDIQKIIKILK--DRGIGVLITDHNVRETLSI-TDRAYII  206 (232)
T ss_pred             HHHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHH--HCCCEEEEEeCCHHHHHHh-CCEEEEE
Confidence            345777788889999999773      2233444444333  2467899999998655554 3344333

The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.

>PRK10908 cell division protein FtsE; Provisional

Probab=98.58  E-value=4.3e-07  Score=69.31  Aligned_cols=62  Identities=13%  Similarity=0.177  Sum_probs=39.8

Q ss_pred             hHHHHHHHhCCceEEEEEeCCCC------HHHHHHhhcCCCCCCCCcEEEEEeCCchhhhccCCcceEEec
Q 039455          120 GINLIRWRLCRKRVLVVLDDVDQ------LEQLQALAGNHDWFGFGSRIIITTRDEHVLKGHGVTNIYKVR  184 (216)
Q Consensus       120 ~~~~l~~~l~~~~~llvlDd~~~------~~~~~~l~~~~~~~~~~~~il~tsr~~~~~~~~~~~~~~~l~  184 (216)
                      ..-.+...+..++-++++|+.-+      .+.+..++..+.  ..+..+|++||+.+....+ ++..+.+.
T Consensus       144 qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~--~~~~tiii~sH~~~~~~~~-~d~i~~l~  211 (222)
T PRK10908        144 QRVGIARAVVNKPAVLLADEPTGNLDDALSEGILRLFEEFN--RVGVTVLMATHDIGLISRR-SYRMLTLS  211 (222)
T ss_pred             HHHHHHHHHHcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHH--HCCCEEEEEeCCHHHHHHh-CCEEEEEE
Confidence            34457777788889999998732      233444444332  2467899999998876664 44555443

>cd03250 ABCC_MRP_domain1 Domain 1 of the ABC subfamily C

Probab=98.58  E-value=9.1e-07  Score=66.61  Aligned_cols=133  Identities=13%  Similarity=0.111  Sum_probs=70.6

Q ss_pred             CCeeEEEEEecCCCcHHHHHHHHHHHhcCCCCce------Eeecccc---------ccccccCc-hHHHHHHHHH-----
Q 039455           47 DDVRFIGICGMGGIGKTTLAKVLYNTLKDQFEAS------SFLANVR---------EVSVTRGL-VPLQEQLLSE-----  105 (216)
Q Consensus        47 ~~~~~i~I~G~~GiGKTtL~~~~~~~~~~~~~~~------~~~~~~~---------~~~~~~~~-~~~~~~l~~~-----  105 (216)
                      +.+..++|.|++|+|||||++.+++........+      .++..-.         ........ ..........     
T Consensus        29 ~~G~~~~i~G~nG~GKSTLl~~i~G~~~~~~G~i~~~g~i~~~~q~~~l~~~t~~enl~~~~~~~~~~~~~~~~~~~l~~  108 (204)
T cd03250          29 PKGELVAIVGPVGSGKSSLLSALLGELEKLSGSVSVPGSIAYVSQEPWIQNGTIRENILFGKPFDEERYEKVIKACALEP  108 (204)
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhCcCCCCCCeEEEcCEEEEEecCchhccCcHHHHhccCCCcCHHHHHHHHHHcCcHH
Confidence            4568999999999999999999998654322111      1111000         00000000 0011111111     


Q ss_pred             -HHhh----------ccccccchhhhHHHHHHHhCCceEEEEEeCCCC------HHHHHH-hhcCCCCCCCCcEEEEEeC
Q 039455          106 -VLME----------RNLIIWDVHKGINLIRWRLCRKRVLVVLDDVDQ------LEQLQA-LAGNHDWFGFGSRIIITTR  167 (216)
Q Consensus       106 -~~~~----------~~~~~~~~~~~~~~l~~~l~~~~~llvlDd~~~------~~~~~~-l~~~~~~~~~~~~il~tsr  167 (216)
                       +...          .....+..+...-.+...+..++-++++|+..+      .+.+.. ++....  ..+..+|++||
T Consensus       109 ~~~~~~~~~~~~~~~~~~~lS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~ll~~~~--~~~~tvi~~sh  186 (204)
T cd03250         109 DLEILPDGDLTEIGEKGINLSGGQKQRISLARAVYSDADIYLLDDPLSAVDAHVGRHIFENCILGLL--LNNKTRILVTH  186 (204)
T ss_pred             HHHhccCcccceecCCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHhc--cCCCEEEEEeC
Confidence             1000          001122333445568888889999999998732      122322 332222  23678999999


Q ss_pred             CchhhhccCCcceEEe
Q 039455          168 DEHVLKGHGVTNIYKV  183 (216)
Q Consensus       168 ~~~~~~~~~~~~~~~l  183 (216)
                      +......  ++..+.+
T Consensus       187 ~~~~~~~--~d~i~~l  200 (204)
T cd03250         187 QLQLLPH--ADQIVVL  200 (204)
T ss_pred             CHHHHhh--CCEEEEE
Confidence            9876664  4555554

This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.

>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK

Probab=98.58  E-value=3.2e-07  Score=69.56  Aligned_cols=61  Identities=15%  Similarity=0.108  Sum_probs=37.5

Q ss_pred             HHHHHHHhCCceEEEEEeCCCC------HHHHHHhhcCCCCCCCCcEEEEEeCCchhhhccCCcceEEe
Q 039455          121 INLIRWRLCRKRVLVVLDDVDQ------LEQLQALAGNHDWFGFGSRIIITTRDEHVLKGHGVTNIYKV  183 (216)
Q Consensus       121 ~~~l~~~l~~~~~llvlDd~~~------~~~~~~l~~~~~~~~~~~~il~tsr~~~~~~~~~~~~~~~l  183 (216)
                      .-.+...+..++-++++|+.-.      ...+..++..+.. ..+..+|++||+.+....+ +++.+.+
T Consensus       138 r~~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~~~tvi~~sH~~~~~~~~-~d~i~~l  204 (213)
T cd03301         138 RVALGRAIVREPKVFLMDEPLSNLDAKLRVQMRAELKRLQQ-RLGTTTIYVTHDQVEAMTM-ADRIAVM  204 (213)
T ss_pred             HHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHH-HcCCEEEEEeCCHHHHHHh-cCeEEEE
Confidence            3457777778888999998732      2333333333220 1367899999998766554 3444444

ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.

>PRK11819 putative ABC transporter ATP-binding protein; Reviewed

Probab=98.58  E-value=6e-07  Score=77.63  Aligned_cols=51  Identities=16%  Similarity=0.174  Sum_probs=35.1

Q ss_pred             hHHHHHHHhCCceEEEEEeCCC------CHHHHHHhhcCCCCCCCCcEEEEEeCCchhhhcc
Q 039455          120 GINLIRWRLCRKRVLVVLDDVD------QLEQLQALAGNHDWFGFGSRIIITTRDEHVLKGH  175 (216)
Q Consensus       120 ~~~~l~~~l~~~~~llvlDd~~------~~~~~~~l~~~~~~~~~~~~il~tsr~~~~~~~~  175 (216)
                      ....+...+..++-++++|+..      ....+..++..+.     ..||++||+.+.+...
T Consensus       170 qrv~la~al~~~p~vlLLDEPt~~LD~~~~~~l~~~L~~~~-----~tviiisHd~~~~~~~  226 (556)
T PRK11819        170 RRVALCRLLLEKPDMLLLDEPTNHLDAESVAWLEQFLHDYP-----GTVVAVTHDRYFLDNV  226 (556)
T ss_pred             HHHHHHHHHhCCCCEEEEcCCCCcCChHHHHHHHHHHHhCC-----CeEEEEeCCHHHHHhh
Confidence            3445777888889999999873      2234444544432     4799999999876654

>PRK05707 DNA polymerase III subunit delta'; Validated

Probab=98.58  E-value=3.4e-06  Score=67.95  Aligned_cols=70  Identities=11%  Similarity=0.101  Sum_probs=47.4

Q ss_pred             CceEEEEEeCCCCH--HHHHHhhcCCCCCCCCcEEEEEeCCch-hhhcc-CCcceEEecCCChHHHHHHHhhhh
Q 039455          130 RKRVLVVLDDVDQL--EQLQALAGNHDWFGFGSRIIITTRDEH-VLKGH-GVTNIYKVRGLDYVEALQLFHLKV  199 (216)
Q Consensus       130 ~~~~llvlDd~~~~--~~~~~l~~~~~~~~~~~~il~tsr~~~-~~~~~-~~~~~~~l~~l~~~~~~~ll~~~~  199 (216)
                      ++.-++|||+++..  .....++..+..-..++.+|++|++.+ +...+ ..-..+.+.|++.+++.+.+....
T Consensus       105 ~~~kv~iI~~a~~m~~~aaNaLLK~LEEPp~~~~fiL~t~~~~~ll~TI~SRc~~~~~~~~~~~~~~~~L~~~~  178 (328)
T PRK05707        105 GGRKVVLIEPAEAMNRNAANALLKSLEEPSGDTVLLLISHQPSRLLPTIKSRCQQQACPLPSNEESLQWLQQAL  178 (328)
T ss_pred             CCCeEEEECChhhCCHHHHHHHHHHHhCCCCCeEEEEEECChhhCcHHHHhhceeeeCCCcCHHHHHHHHHHhc
Confidence            34557788999854  556666665554345677777777653 33332 234679999999999999998653

>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN

Probab=98.58  E-value=7.4e-07  Score=69.74  Aligned_cols=24  Identities=33%  Similarity=0.321  Sum_probs=21.7

Q ss_pred             eEEEEEecCCCcHHHHHHHHHHHh
Q 039455           50 RFIGICGMGGIGKTTLAKVLYNTL   73 (216)
Q Consensus        50 ~~i~I~G~~GiGKTtL~~~~~~~~   73 (216)
                      ..+.|.|++|+|||+||+.++...
T Consensus        22 ~~vLL~G~~GtGKT~lA~~la~~l   45 (262)
T TIGR02640        22 YPVHLRGPAGTGKTTLAMHVARKR   45 (262)
T ss_pred             CeEEEEcCCCCCHHHHHHHHHHHh
Confidence            678899999999999999999755

Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).

>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake

Probab=98.58  E-value=4.2e-07  Score=69.16  Aligned_cols=60  Identities=13%  Similarity=0.178  Sum_probs=38.8

Q ss_pred             HHHHHHHhCCceEEEEEeCCCC------HHHHHHhhcCCCCCCCCcEEEEEeCCchhhhccCCcceEEe
Q 039455          121 INLIRWRLCRKRVLVVLDDVDQ------LEQLQALAGNHDWFGFGSRIIITTRDEHVLKGHGVTNIYKV  183 (216)
Q Consensus       121 ~~~l~~~l~~~~~llvlDd~~~------~~~~~~l~~~~~~~~~~~~il~tsr~~~~~~~~~~~~~~~l  183 (216)
                      ...+...+..++-++++|+...      .+.+..++..+.  ..+..+|++||+.+....+ ++..+.+
T Consensus       144 rv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~--~~~~tii~~tH~~~~~~~~-~d~i~~l  209 (218)
T cd03266         144 KVAIARALVHDPPVLLLDEPTTGLDVMATRALREFIRQLR--ALGKCILFSTHIMQEVERL-CDRVVVL  209 (218)
T ss_pred             HHHHHHHHhcCCCEEEEcCCCcCCCHHHHHHHHHHHHHHH--HCCCEEEEEeCCHHHHHHh-cCEEEEE
Confidence            3457777788889999998732      233444444332  2467899999998766554 4444444

NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.

>COG1373 Predicted ATPase (AAA+ superfamily) [General function prediction only]

Probab=98.58  E-value=8.3e-07  Score=73.41  Aligned_cols=117  Identities=21%  Similarity=0.187  Sum_probs=74.5

Q ss_pred             EEEEEecCCCcHHHHHHHHHHHhcCCCCceEeeccccccccccCchHHHHHHHHHHHhhccccccchhhhHHHHHHHhCC
Q 039455           51 FIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLANVREVSVTRGLVPLQEQLLSEVLMERNLIIWDVHKGINLIRWRLCR  130 (216)
Q Consensus        51 ~i~I~G~~GiGKTtL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~  130 (216)
                      +++|.||.++||||+++.+.....+.   .+++......   ...... .+...                  .+......
T Consensus        39 i~~i~GpR~~GKTtll~~l~~~~~~~---~iy~~~~d~~---~~~~~l-~d~~~------------------~~~~~~~~   93 (398)
T COG1373          39 IILILGPRQVGKTTLLKLLIKGLLEE---IIYINFDDLR---LDRIEL-LDLLR------------------AYIELKER   93 (398)
T ss_pred             EEEEECCccccHHHHHHHHHhhCCcc---eEEEEecchh---cchhhH-HHHHH------------------HHHHhhcc
Confidence            99999999999999997777665444   3333211110   000000 11111                  11111112


Q ss_pred             ceEEEEEeCCCCHHHHHHhhcCCCCCCCCcEEEEEeCCchhhhc-----c-CCcceEEecCCChHHHHH
Q 039455          131 KRVLVVLDDVDQLEQLQALAGNHDWFGFGSRIIITTRDEHVLKG-----H-GVTNIYKVRGLDYVEALQ  193 (216)
Q Consensus       131 ~~~llvlDd~~~~~~~~~l~~~~~~~~~~~~il~tsr~~~~~~~-----~-~~~~~~~l~~l~~~~~~~  193 (216)
                      ++..++||++.....|...+..+.+.++. .+++|+.+..+...     + +....+++-|||..|...
T Consensus        94 ~~~yifLDEIq~v~~W~~~lk~l~d~~~~-~v~itgsss~ll~~~~~~~L~GR~~~~~l~PlSF~Efl~  161 (398)
T COG1373          94 EKSYIFLDEIQNVPDWERALKYLYDRGNL-DVLITGSSSSLLSKEISESLAGRGKDLELYPLSFREFLK  161 (398)
T ss_pred             CCceEEEecccCchhHHHHHHHHHccccc-eEEEECCchhhhccchhhhcCCCceeEEECCCCHHHHHh
Confidence            67899999999999998888777655555 78887776644332     1 346889999999999865

>PRK06526 transposase; Provisional

Probab=98.57  E-value=5e-07  Score=70.19  Aligned_cols=34  Identities=26%  Similarity=0.087  Sum_probs=26.3

Q ss_pred             eeEEEEEecCCCcHHHHHHHHHHHhcCCCCceEe
Q 039455           49 VRFIGICGMGGIGKTTLAKVLYNTLKDQFEASSF   82 (216)
Q Consensus        49 ~~~i~I~G~~GiGKTtL~~~~~~~~~~~~~~~~~   82 (216)
                      ...++++||+|+|||+|+..++.........+.|
T Consensus        98 ~~nlll~Gp~GtGKThLa~al~~~a~~~g~~v~f  131 (254)
T PRK06526         98 KENVVFLGPPGTGKTHLAIGLGIRACQAGHRVLF  131 (254)
T ss_pred             CceEEEEeCCCCchHHHHHHHHHHHHHCCCchhh
Confidence            4679999999999999999999876544333333

>TIGR01288 nodI ATP-binding ABC transporter family nodulation protein NodI

Probab=98.57  E-value=3.9e-07  Score=72.84  Aligned_cols=53  Identities=15%  Similarity=0.055  Sum_probs=35.8

Q ss_pred             HHHHHHHhCCceEEEEEeCCC------CHHHHHHhhcCCCCCCCCcEEEEEeCCchhhhcc
Q 039455          121 INLIRWRLCRKRVLVVLDDVD------QLEQLQALAGNHDWFGFGSRIIITTRDEHVLKGH  175 (216)
Q Consensus       121 ~~~l~~~l~~~~~llvlDd~~------~~~~~~~l~~~~~~~~~~~~il~tsr~~~~~~~~  175 (216)
                      .-.+...+..++-++++|+.-      ....+..++..+.  ..+..||++||+.+.+..+
T Consensus       143 rv~la~al~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~--~~g~til~~sH~~~~~~~~  201 (303)
T TIGR01288       143 RLTLARALINDPQLLILDEPTTGLDPHARHLIWERLRSLL--ARGKTILLTTHFMEEAERL  201 (303)
T ss_pred             HHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHH--hCCCEEEEECCCHHHHHHh
Confidence            335777788899999999873      2234444444443  2467899999998765543

This model does not recognize the highly divergent NodI from Azorhizobium caulinodans.

>PRK10787 DNA-binding ATP-dependent protease La; Provisional

Probab=98.56  E-value=7.4e-07  Score=79.39  Aligned_cols=158  Identities=16%  Similarity=0.179  Sum_probs=86.6

Q ss_pred             cccccchhHHHHHHHHHhcC----CCCeeEEEEEecCCCcHHHHHHHHHHHhcCCCCceEeeccccccccccCchHHHHH
Q 039455           26 DGLVGIASRMEKMNGYLEAG----LDDVRFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLANVREVSVTRGLVPLQEQ  101 (216)
Q Consensus        26 ~~~vgR~~~~~~l~~~l~~~----~~~~~~i~I~G~~GiGKTtL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  101 (216)
                      ...+|.++..++|..++...    ...+..++++||+|+||||+++.++......|..+.+-. .      ...    ..
T Consensus       322 ~~~~g~~~vK~~i~~~l~~~~~~~~~~g~~i~l~GppG~GKTtl~~~ia~~l~~~~~~i~~~~-~------~d~----~~  390 (784)
T PRK10787        322 TDHYGLERVKDRILEYLAVQSRVNKIKGPILCLVGPPGVGKTSLGQSIAKATGRKYVRMALGG-V------RDE----AE  390 (784)
T ss_pred             hhccCHHHHHHHHHHHHHHHHhcccCCCceEEEECCCCCCHHHHHHHHHHHhCCCEEEEEcCC-C------CCH----HH
Confidence            35899999999999887731    235678999999999999999999987654332222111 0      111    01


Q ss_pred             HHHHHHhhc-cccccchhhhHHHHHHHhCCceEEEEEeCCCCHHH------HHHhhcCCC--------CC------C-CC
Q 039455          102 LLSEVLMER-NLIIWDVHKGINLIRWRLCRKRVLVVLDDVDQLEQ------LQALAGNHD--------WF------G-FG  159 (216)
Q Consensus       102 l~~~~~~~~-~~~~~~~~~~~~~l~~~l~~~~~llvlDd~~~~~~------~~~l~~~~~--------~~------~-~~  159 (216)
                      +    .+.. .+...........+...-...+ +++||+++....      ...++..+.        ++      . .+
T Consensus       391 i----~g~~~~~~g~~~G~~~~~l~~~~~~~~-villDEidk~~~~~~g~~~~aLlevld~~~~~~~~d~~~~~~~dls~  465 (784)
T PRK10787        391 I----RGHRRTYIGSMPGKLIQKMAKVGVKNP-LFLLDEIDKMSSDMRGDPASALLEVLDPEQNVAFSDHYLEVDYDLSD  465 (784)
T ss_pred             h----ccchhccCCCCCcHHHHHHHhcCCCCC-EEEEEChhhcccccCCCHHHHHHHHhccccEEEEecccccccccCCc
Confidence            1    0000 0000011122333333222233 788999964421      222322211        00      0 23


Q ss_pred             cEEEEEeCCchhhhc-cCCcceEEecCCChHHHHHHHhhhh
Q 039455          160 SRIIITTRDEHVLKG-HGVTNIYKVRGLDYVEALQLFHLKV  199 (216)
Q Consensus       160 ~~il~tsr~~~~~~~-~~~~~~~~l~~l~~~~~~~ll~~~~  199 (216)
                      ..+|.|+....+... ++....+++.+++.++-.++.+++.
T Consensus       466 v~~i~TaN~~~i~~aLl~R~~ii~~~~~t~eek~~Ia~~~L  506 (784)
T PRK10787        466 VMFVATSNSMNIPAPLLDRMEVIRLSGYTEDEKLNIAKRHL  506 (784)
T ss_pred             eEEEEcCCCCCCCHHHhcceeeeecCCCCHHHHHHHHHHhh
Confidence            444555544322111 2344789999999999988887766

>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport

Probab=98.56  E-value=5e-07  Score=69.46  Aligned_cols=62  Identities=16%  Similarity=0.205  Sum_probs=38.3

Q ss_pred             hHHHHHHHhCCceEEEEEeCCCC------HHHHHHhhcCCCCCCCCcEEEEEeCCchhhhccCCcceEEe
Q 039455          120 GINLIRWRLCRKRVLVVLDDVDQ------LEQLQALAGNHDWFGFGSRIIITTRDEHVLKGHGVTNIYKV  183 (216)
Q Consensus       120 ~~~~l~~~l~~~~~llvlDd~~~------~~~~~~l~~~~~~~~~~~~il~tsr~~~~~~~~~~~~~~~l  183 (216)
                      ..-.+...+..++-++++|+.-+      ...+..++..+.. ..+..||++||+.+....+ +++.+.+
T Consensus       147 qrv~la~al~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~-~~~~tvii~sH~~~~~~~~-~d~i~~l  214 (233)
T cd03258         147 QRVGIARALANNPKVLLCDEATSALDPETTQSILALLRDINR-ELGLTIVLITHEMEVVKRI-CDRVAVM  214 (233)
T ss_pred             HHHHHHHHHhcCCCEEEecCCCCcCCHHHHHHHHHHHHHHHH-HcCCEEEEEeCCHHHHHHh-CCEEEEE
Confidence            34457777788888999998732      2333344433320 2367899999998776554 3444444

Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>COG3267 ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion]

Probab=98.56  E-value=6.6e-06  Score=62.70  Aligned_cols=185  Identities=17%  Similarity=0.135  Sum_probs=97.3

Q ss_pred             HhhcCCCCCCcccccccchhHHHHHHHHHhcCCCCeeEEEEEecCCCcHHHHHHHHHHHhcCCCCceEeecccccccccc
Q 039455           14 SKRLNPTFPSAVDGLVGIASRMEKMNGYLEAGLDDVRFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLANVREVSVTR   93 (216)
Q Consensus        14 ~~~~~~~~~~~~~~~vgR~~~~~~l~~~l~~~~~~~~~i~I~G~~GiGKTtL~~~~~~~~~~~~~~~~~~~~~~~~~~~~   93 (216)
                      +.+.+......+..+++..+.-+.+..+-..-.+....+.++|+-|+|||++.+.+..-..+.--.+++++     ....
T Consensus        16 ~~~~pf~~~~~~~~~~~~a~h~e~l~~l~~~i~d~qg~~~vtGevGsGKTv~~Ral~~s~~~d~~~~v~i~-----~~~~   90 (269)
T COG3267          16 FSRLPFSWDIQPGLDYWAADHNEALLMLHAAIADGQGILAVTGEVGSGKTVLRRALLASLNEDQVAVVVID-----KPTL   90 (269)
T ss_pred             hccCCCccchhhhhhhhhhhhhHHHHHHHHHHhcCCceEEEEecCCCchhHHHHHHHHhcCCCceEEEEec-----Ccch
Confidence            34444444334445555555544444432222344579999999999999999955544433222333332     1122


Q ss_pred             CchHHHHHHHHHHHhhccccccchhhhHH----HHHHHh-CCce-EEEEEeCCCCH-----HHHHHhhcCCCCCCCCcEE
Q 039455           94 GLVPLQEQLLSEVLMERNLIIWDVHKGIN----LIRWRL-CRKR-VLVVLDDVDQL-----EQLQALAGNHDWFGFGSRI  162 (216)
Q Consensus        94 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~----~l~~~l-~~~~-~llvlDd~~~~-----~~~~~l~~~~~~~~~~~~i  162 (216)
                      ....+...++..+....   .........    .+.... .+++ ..+++||+..+     +.+.-+...-...+..-.|
T Consensus        91 s~~~~~~ai~~~l~~~p---~~~~~~~~e~~~~~L~al~~~g~r~v~l~vdEah~L~~~~le~Lrll~nl~~~~~~~l~i  167 (269)
T COG3267          91 SDATLLEAIVADLESQP---KVNVNAVLEQIDRELAALVKKGKRPVVLMVDEAHDLNDSALEALRLLTNLEEDSSKLLSI  167 (269)
T ss_pred             hHHHHHHHHHHHhccCc---cchhHHHHHHHHHHHHHHHHhCCCCeEEeehhHhhhChhHHHHHHHHHhhcccccCceee
Confidence            33445556665554422   222222222    233333 3444 89999998533     2233332222222223456


Q ss_pred             EEEeCCc--------hhhhccCCcce-EEecCCChHHHHHHHhhhhcCCCCCc
Q 039455          163 IITTRDE--------HVLKGHGVTNI-YKVRGLDYVEALQLFHLKVSKGKQPT  206 (216)
Q Consensus       163 l~tsr~~--------~~~~~~~~~~~-~~l~~l~~~~~~~ll~~~~~~~~~~~  206 (216)
                      ++.....        .+......... |++.|++.++...|++....+.+.++
T Consensus       168 vL~Gqp~L~~~lr~~~l~e~~~R~~ir~~l~P~~~~~t~~yl~~~Le~a~~~~  220 (269)
T COG3267         168 VLIGQPKLRPRLRLPVLRELEQRIDIRIELPPLTEAETGLYLRHRLEGAGLPE  220 (269)
T ss_pred             eecCCcccchhhchHHHHhhhheEEEEEecCCcChHHHHHHHHHHHhccCCCc
Confidence            6655532        11111122333 99999999999999998776655443

>COG4133 CcmA ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones]

Probab=98.56  E-value=6.6e-08  Score=70.17  Aligned_cols=122  Identities=18%  Similarity=0.152  Sum_probs=68.0

Q ss_pred             CeeEEEEEecCCCcHHHHHHHHHHHhcCCCCceEeeccc-ccccc-----------ccCc---hHHHHH--HHHHHHhh-
Q 039455           48 DVRFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLANV-REVSV-----------TRGL---VPLQEQ--LLSEVLME-  109 (216)
Q Consensus        48 ~~~~i~I~G~~GiGKTtL~~~~~~~~~~~~~~~~~~~~~-~~~~~-----------~~~~---~~~~~~--l~~~~~~~-  109 (216)
                      .+..+.|+|++|+|||||++.+++-.+.....+.|-... .....           ...+   ....+.  +...+... 
T Consensus        27 ~Ge~~~i~G~NG~GKTtLLRilaGLl~p~~G~v~~~~~~i~~~~~~~~~~l~yLGH~~giK~eLTa~ENL~F~~~~~~~~  106 (209)
T COG4133          27 AGEALQITGPNGAGKTTLLRILAGLLRPDAGEVYWQGEPIQNVRESYHQALLYLGHQPGIKTELTALENLHFWQRFHGSG  106 (209)
T ss_pred             CCCEEEEECCCCCcHHHHHHHHHcccCCCCCeEEecCCCCccchhhHHHHHHHhhccccccchhhHHHHHHHHHHHhCCC
Confidence            457999999999999999999999776655555554211 00000           0000   000111  11111111 


Q ss_pred             --------------------ccccccchhhhHHHHHHHhCCceEEEEEeCCCC------HHHHHHhhcCCCCCCCCcEEE
Q 039455          110 --------------------RNLIIWDVHKGINLIRWRLCRKRVLVVLDDVDQ------LEQLQALAGNHDWFGFGSRII  163 (216)
Q Consensus       110 --------------------~~~~~~~~~~~~~~l~~~l~~~~~llvlDd~~~------~~~~~~l~~~~~~~~~~~~il  163 (216)
                                          .-...+..+.....+.+..-..+-+-|||+...      ...+..++..  ++..|..||
T Consensus       107 ~~~~i~~Al~~vgL~g~~dlp~~~LSAGQqRRvAlArL~ls~~pLWiLDEP~taLDk~g~a~l~~l~~~--H~~~GGiVl  184 (209)
T COG4133         107 NAATIWEALAQVGLAGLEDLPVGQLSAGQQRRVALARLWLSPAPLWILDEPFTALDKEGVALLTALMAA--HAAQGGIVL  184 (209)
T ss_pred             chhhHHHHHHHcCcccccccchhhcchhHHHHHHHHHHHcCCCCceeecCcccccCHHHHHHHHHHHHH--HhcCCCEEE
Confidence                                001122334445567788888888999998742      2334444322  235788999


Q ss_pred             EEeCCchh
Q 039455          164 ITTRDEHV  171 (216)
Q Consensus       164 ~tsr~~~~  171 (216)
                      +|||.+..
T Consensus       185 lttHq~l~  192 (209)
T COG4133         185 LTTHQPLP  192 (209)
T ss_pred             EecCCccC
Confidence            99997743

>TIGR01277 thiQ thiamine ABC transporter, ATP-binding protein

Probab=98.55  E-value=5.2e-07  Score=68.41  Aligned_cols=61  Identities=16%  Similarity=0.105  Sum_probs=37.9

Q ss_pred             HHHHHHHhCCceEEEEEeCCCC------HHHHHHhhcCCCCCCCCcEEEEEeCCchhhhccCCcceEEe
Q 039455          121 INLIRWRLCRKRVLVVLDDVDQ------LEQLQALAGNHDWFGFGSRIIITTRDEHVLKGHGVTNIYKV  183 (216)
Q Consensus       121 ~~~l~~~l~~~~~llvlDd~~~------~~~~~~l~~~~~~~~~~~~il~tsr~~~~~~~~~~~~~~~l  183 (216)
                      .-.+...+..++-++++|+...      ...+..++..+.. ..+..||++||+.+....+ ++..+.+
T Consensus       136 rl~laral~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~-~~~~tii~vsh~~~~~~~~-~d~v~~l  202 (213)
T TIGR01277       136 RVALARCLVRPNPILLLDEPFSALDPLLREEMLALVKQLCS-ERQRTLLMVTHHLSDARAI-ASQIAVV  202 (213)
T ss_pred             HHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHH-hcCCEEEEEeCCHHHHHhh-cCeEEEE
Confidence            4456777778889999998732      2334444433320 2367899999998765543 4454444

This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found.

>cd03220 ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export

Probab=98.55  E-value=5e-07  Score=69.08  Aligned_cols=60  Identities=13%  Similarity=0.096  Sum_probs=38.3

Q ss_pred             HHHHHHHhCCceEEEEEeCCCC------HHHHHHhhcCCCCCCCCcEEEEEeCCchhhhccCCcceEEe
Q 039455          121 INLIRWRLCRKRVLVVLDDVDQ------LEQLQALAGNHDWFGFGSRIIITTRDEHVLKGHGVTNIYKV  183 (216)
Q Consensus       121 ~~~l~~~l~~~~~llvlDd~~~------~~~~~~l~~~~~~~~~~~~il~tsr~~~~~~~~~~~~~~~l  183 (216)
                      .-.+...+..++-++++|+..+      ...+..++..+.  ..+..||++||+.+.+..+ +++.+.+
T Consensus       150 rv~laral~~~p~llllDEP~~gLD~~~~~~~~~~l~~~~--~~~~tiii~sH~~~~~~~~-~d~i~~l  215 (224)
T cd03220         150 RLAFAIATALEPDILLIDEVLAVGDAAFQEKCQRRLRELL--KQGKTVILVSHDPSSIKRL-CDRALVL  215 (224)
T ss_pred             HHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHH--hCCCEEEEEeCCHHHHHHh-CCEEEEE
Confidence            3457888888999999998732      223333333332  2357899999998776654 3444444

Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenzae) and a cytoplasmic membrane protein MPA2.

>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only]

Probab=98.55  E-value=1.7e-06  Score=61.94  Aligned_cols=134  Identities=16%  Similarity=0.138  Sum_probs=74.1

Q ss_pred             CCeeEEEEEecCCCcHHHHHHHHHHHhcCCCCceEeeccccccccccCch------------------------------
Q 039455           47 DDVRFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLANVREVSVTRGLV------------------------------   96 (216)
Q Consensus        47 ~~~~~i~I~G~~GiGKTtL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------------------------   96 (216)
                      ..+..++|+||+|+|||||.+.++..+.....-+.|-...-+   .....                              
T Consensus        27 ~~Ge~iaitGPSG~GKStllk~va~Lisp~~G~l~f~Ge~vs---~~~pea~Rq~VsY~~Q~paLfg~tVeDNlifP~~~  103 (223)
T COG4619          27 RAGEFIAITGPSGCGKSTLLKIVASLISPTSGTLLFEGEDVS---TLKPEAYRQQVSYCAQTPALFGDTVEDNLIFPWQI  103 (223)
T ss_pred             cCCceEEEeCCCCccHHHHHHHHHhccCCCCceEEEcCcccc---ccChHHHHHHHHHHHcCccccccchhhccccchHH
Confidence            346789999999999999999999865543333333210000   00000                              


Q ss_pred             -------HHHHHHHHHHHhh------ccccccchhhhHHHHHHHhCCceEEEEEeCCC------CHHHHHHhhcCCCCCC
Q 039455           97 -------PLQEQLLSEVLME------RNLIIWDVHKGINLIRWRLCRKRVLVVLDDVD------QLEQLQALAGNHDWFG  157 (216)
Q Consensus        97 -------~~~~~l~~~~~~~------~~~~~~~~~~~~~~l~~~l~~~~~llvlDd~~------~~~~~~~l~~~~~~~~  157 (216)
                             ....+++......      .-...+..+.....+.+.+.-.+-+|+||+.-      +...++.++..+.. .
T Consensus       104 r~rr~dr~aa~~llar~~l~~~~L~k~it~lSGGE~QriAliR~Lq~~P~ILLLDE~TsALD~~nkr~ie~mi~~~v~-~  182 (223)
T COG4619         104 RNRRPDRAAALDLLARFALPDSILTKNITELSGGEKQRIALIRNLQFMPKILLLDEITSALDESNKRNIEEMIHRYVR-E  182 (223)
T ss_pred             hccCCChHHHHHHHHHcCCchhhhcchhhhccchHHHHHHHHHHhhcCCceEEecCchhhcChhhHHHHHHHHHHHhh-h
Confidence                   1111111111100      00112233444556777788888899999773      34556777655542 3


Q ss_pred             CCcEEEEEeCCchhhhccCCcceEEecC
Q 039455          158 FGSRIIITTRDEHVLKGHGVTNIYKVRG  185 (216)
Q Consensus       158 ~~~~il~tsr~~~~~~~~~~~~~~~l~~  185 (216)
                      ....++-.||+.+-...+ .+..+.+.+
T Consensus       183 q~vAv~WiTHd~dqa~rh-a~k~itl~~  209 (223)
T COG4619         183 QNVAVLWITHDKDQAIRH-ADKVITLQP  209 (223)
T ss_pred             hceEEEEEecChHHHhhh-hheEEEecc
Confidence            456678888887654444 334444443

>TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE

Probab=98.54  E-value=3.4e-07  Score=70.21  Aligned_cols=55  Identities=13%  Similarity=0.106  Sum_probs=35.7

Q ss_pred             hHHHHHHHhCCceEEEEEeCCC------CHHHHHHhhcCCCCCCCCcEEEEEeCCchhhhcc
Q 039455          120 GINLIRWRLCRKRVLVVLDDVD------QLEQLQALAGNHDWFGFGSRIIITTRDEHVLKGH  175 (216)
Q Consensus       120 ~~~~l~~~l~~~~~llvlDd~~------~~~~~~~l~~~~~~~~~~~~il~tsr~~~~~~~~  175 (216)
                      ....+...+..++-++++|+.-      +...+..++..+.. ..+..+|++||+.+....+
T Consensus       138 qrv~la~al~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~-~~~~tii~~sH~~~~~~~~  198 (230)
T TIGR03410       138 QQLAIARALVTRPKLLLLDEPTEGIQPSIIKDIGRVIRRLRA-EGGMAILLVEQYLDFAREL  198 (230)
T ss_pred             HHHHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHH-cCCcEEEEEeCCHHHHHHh
Confidence            3445777778888999999873      22334444433321 1367899999998876654

Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.

>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]

Probab=98.54  E-value=5.2e-07  Score=70.12  Aligned_cols=37  Identities=27%  Similarity=0.257  Sum_probs=30.3

Q ss_pred             CeeEEEEEecCCCcHHHHHHHHHHHhcCCCCceEeec
Q 039455           48 DVRFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLA   84 (216)
Q Consensus        48 ~~~~i~I~G~~GiGKTtL~~~~~~~~~~~~~~~~~~~   84 (216)
                      +...++++|++|+|||+||.++++++......+.++.
T Consensus       104 ~~~nl~l~G~~G~GKThLa~Ai~~~l~~~g~sv~f~~  140 (254)
T COG1484         104 RGENLVLLGPPGVGKTHLAIAIGNELLKAGISVLFIT  140 (254)
T ss_pred             cCCcEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEE
Confidence            5679999999999999999999998874444555554

>PRK13546 teichoic acids export protein ATP-binding subunit; Provisional

Probab=98.54  E-value=4.5e-07  Score=71.02  Aligned_cols=54  Identities=6%  Similarity=0.021  Sum_probs=35.1

Q ss_pred             hHHHHHHHhCCceEEEEEeCCCCH------HHHHHhhcCCCCCCCCcEEEEEeCCchhhhcc
Q 039455          120 GINLIRWRLCRKRVLVVLDDVDQL------EQLQALAGNHDWFGFGSRIIITTRDEHVLKGH  175 (216)
Q Consensus       120 ~~~~l~~~l~~~~~llvlDd~~~~------~~~~~l~~~~~~~~~~~~il~tsr~~~~~~~~  175 (216)
                      ..-.+...+..++-++++|+..+.      +.+..++..+.  ..+..||++||+......+
T Consensus       150 qrv~Laral~~~p~iLlLDEPt~gLD~~~~~~l~~~L~~~~--~~g~tiIiisH~~~~i~~~  209 (264)
T PRK13546        150 AKLGFSINITVNPDILVIDEALSVGDQTFAQKCLDKIYEFK--EQNKTIFFVSHNLGQVRQF  209 (264)
T ss_pred             HHHHHHHHHhhCCCEEEEeCccccCCHHHHHHHHHHHHHHH--HCCCEEEEEcCCHHHHHHH
Confidence            344577788888999999987421      22333333332  3467899999998765543

>PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional

Probab=98.54  E-value=7.1e-07  Score=69.33  Aligned_cols=60  Identities=8%  Similarity=0.082  Sum_probs=37.9

Q ss_pred             HHHHHHHhCCceEEEEEeCCCC------HHHHHHhhcCCCCCCCCcEEEEEeCCchhhhccCCcceEEe
Q 039455          121 INLIRWRLCRKRVLVVLDDVDQ------LEQLQALAGNHDWFGFGSRIIITTRDEHVLKGHGVTNIYKV  183 (216)
Q Consensus       121 ~~~l~~~l~~~~~llvlDd~~~------~~~~~~l~~~~~~~~~~~~il~tsr~~~~~~~~~~~~~~~l  183 (216)
                      .-.+...+..++-++++|+..+      ...+..++..+.  ..+..+|++||+.+....+ ++..+.+
T Consensus       152 rv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~--~~~~tvi~~tH~~~~~~~~-~d~i~~l  217 (250)
T PRK11264        152 RVAIARALAMRPEVILFDEPTSALDPELVGEVLNTIRQLA--QEKRTMVIVTHEMSFARDV-ADRAIFM  217 (250)
T ss_pred             HHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHH--hcCCEEEEEeCCHHHHHHh-cCEEEEE
Confidence            3457777788889999998732      233444443332  2467899999998776554 3344333

>TIGR01184 ntrCD nitrate transport ATP-binding subunits C and D

Probab=98.53  E-value=2.1e-07  Score=71.46  Aligned_cols=62  Identities=13%  Similarity=-0.033  Sum_probs=38.1

Q ss_pred             hHHHHHHHhCCceEEEEEeCCCC------HHHHHHhhcCCCCCCCCcEEEEEeCCchhhhccCCcceEEe
Q 039455          120 GINLIRWRLCRKRVLVVLDDVDQ------LEQLQALAGNHDWFGFGSRIIITTRDEHVLKGHGVTNIYKV  183 (216)
Q Consensus       120 ~~~~l~~~l~~~~~llvlDd~~~------~~~~~~l~~~~~~~~~~~~il~tsr~~~~~~~~~~~~~~~l  183 (216)
                      ..-.+...+..++-++++|+.-+      ...+..++..+.. ..+..||++||+.+....+ +++.+.+
T Consensus       121 qrv~la~al~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~-~~~~tii~~sH~~~~~~~~-~d~v~~l  188 (230)
T TIGR01184       121 QRVAIARALSIRPKVLLLDEPFGALDALTRGNLQEELMQIWE-EHRVTVLMVTHDVDEALLL-SDRVVML  188 (230)
T ss_pred             HHHHHHHHHHcCCCEEEEcCCCcCCCHHHHHHHHHHHHHHHH-hcCCEEEEEeCCHHHHHHh-cCEEEEE
Confidence            34457777888889999998732      2334443333220 1367899999998765554 3444444

This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase.

>cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import

Probab=98.53  E-value=4.4e-07  Score=70.04  Aligned_cols=62  Identities=10%  Similarity=0.037  Sum_probs=38.2

Q ss_pred             hHHHHHHHhCCceEEEEEeCCCC------HHHHHHhhcCCCCCCCCcEEEEEeCCchhhhccCCcceEEe
Q 039455          120 GINLIRWRLCRKRVLVVLDDVDQ------LEQLQALAGNHDWFGFGSRIIITTRDEHVLKGHGVTNIYKV  183 (216)
Q Consensus       120 ~~~~l~~~l~~~~~llvlDd~~~------~~~~~~l~~~~~~~~~~~~il~tsr~~~~~~~~~~~~~~~l  183 (216)
                      ..-.+...+..++-++++|+.-+      ...+..++..+.. ..+..||++||+.+....+ +++.+.+
T Consensus       143 qrl~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~~~tvii~sH~~~~~~~~-~d~i~~l  210 (239)
T cd03296         143 QRVALARALAVEPKVLLLDEPFGALDAKVRKELRRWLRRLHD-ELHVTTVFVTHDQEEALEV-ADRVVVM  210 (239)
T ss_pred             HHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHH-HcCCEEEEEeCCHHHHHHh-CCEEEEE
Confidence            34457777788889999998732      2334444433321 1367899999998765544 3444444

Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]

Probab=98.53  E-value=1.6e-06  Score=73.88  Aligned_cols=170  Identities=21%  Similarity=0.207  Sum_probs=95.5

Q ss_pred             CCccccccc-chhHHHHHHHHHh-----------cCCCCeeEEEEEecCCCcHHHHHHHHHHHhcCCCCceEeecccccc
Q 039455           22 PSAVDGLVG-IASRMEKMNGYLE-----------AGLDDVRFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLANVREV   89 (216)
Q Consensus        22 ~~~~~~~vg-R~~~~~~l~~~l~-----------~~~~~~~~i~I~G~~GiGKTtL~~~~~~~~~~~~~~~~~~~~~~~~   89 (216)
                      |...+.=+| -++...+|...+.           -+-...+-|.++||+|+|||++|+.+++...-.|-.+-        
T Consensus       429 p~v~W~dIGGlE~lK~elq~~V~~p~~~pe~F~r~Gi~ppkGVLlyGPPGC~KT~lAkalAne~~~nFlsvk--------  500 (693)
T KOG0730|consen  429 PNVSWDDIGGLEELKRELQQAVEWPLKHPEKFARFGISPPKGVLLYGPPGCGKTLLAKALANEAGMNFLSVK--------  500 (693)
T ss_pred             CCCChhhccCHHHHHHHHHHHHhhhhhchHHHHHhcCCCCceEEEECCCCcchHHHHHHHhhhhcCCeeecc--------
Confidence            344455566 4444445554332           11244689999999999999999999998765542220        


Q ss_pred             ccccCchHHHHHHHHHHHhhccccccchhhhHHHHHHHhCCceEEEEEeCCCCHH-------------HHHHhhcCCCCC
Q 039455           90 SVTRGLVPLQEQLLSEVLMERNLIIWDVHKGINLIRWRLCRKRVLVVLDDVDQLE-------------QLQALAGNHDWF  156 (216)
Q Consensus        90 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~llvlDd~~~~~-------------~~~~l~~~~~~~  156 (216)
                               ..+++....+.      +-......+.+.-+-.+++|+||++|+..             -+..++..+.=.
T Consensus       501 ---------gpEL~sk~vGe------SEr~ir~iF~kAR~~aP~IiFfDEiDsi~~~R~g~~~~v~~RVlsqLLtEmDG~  565 (693)
T KOG0730|consen  501 ---------GPELFSKYVGE------SERAIREVFRKARQVAPCIIFFDEIDALAGSRGGSSSGVTDRVLSQLLTEMDGL  565 (693)
T ss_pred             ---------CHHHHHHhcCc------hHHHHHHHHHHHhhcCCeEEehhhHHhHhhccCCCccchHHHHHHHHHHHcccc
Confidence                     01122211111      11112223333444567999999997552             133444433211


Q ss_pred             --CCCcEEEEEeCCchhhhc--c---CCcceEEecCCChHHHHHHHhhhhcCCCCCch-hHhhhcc
Q 039455          157 --GFGSRIIITTRDEHVLKG--H---GVTNIYKVRGLDYVEALQLFHLKVSKGKQPTD-DRVELSK  214 (216)
Q Consensus       157 --~~~~~il~tsr~~~~~~~--~---~~~~~~~l~~l~~~~~~~ll~~~~~~~~~~~~-~~~~l~~  214 (216)
                        .++..||-.|.-++..+.  +   ..+..+.+++-+.+...++|+.++-+-..+++ ++++|+.
T Consensus       566 e~~k~V~ViAATNRpd~ID~ALlRPGRlD~iiyVplPD~~aR~~Ilk~~~kkmp~~~~vdl~~La~  631 (693)
T KOG0730|consen  566 EALKNVLVIAATNRPDMIDPALLRPGRLDRIIYVPLPDLEARLEILKQCAKKMPFSEDVDLEELAQ  631 (693)
T ss_pred             cccCcEEEEeccCChhhcCHHHcCCcccceeEeecCccHHHHHHHHHHHHhcCCCCccccHHHHHH
Confidence              123444444443433222  1   25788999999999999999988855543333 5666654

>PRK13536 nodulation factor exporter subunit NodI; Provisional

Probab=98.53  E-value=1.9e-07  Score=75.61  Aligned_cols=53  Identities=15%  Similarity=0.055  Sum_probs=36.5

Q ss_pred             HHHHHHHhCCceEEEEEeCCC------CHHHHHHhhcCCCCCCCCcEEEEEeCCchhhhcc
Q 039455          121 INLIRWRLCRKRVLVVLDDVD------QLEQLQALAGNHDWFGFGSRIIITTRDEHVLKGH  175 (216)
Q Consensus       121 ~~~l~~~l~~~~~llvlDd~~------~~~~~~~l~~~~~~~~~~~~il~tsr~~~~~~~~  175 (216)
                      .-.+...+..++-++++|+.-      ....+.+++..+.  ..+..||++||+.+....+
T Consensus       180 rv~lA~aL~~~P~lLiLDEPt~gLD~~~r~~l~~~l~~l~--~~g~tilisSH~l~e~~~~  238 (340)
T PRK13536        180 RLTLARALINDPQLLILDEPTTGLDPHARHLIWERLRSLL--ARGKTILLTTHFMEEAERL  238 (340)
T ss_pred             HHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHH--hCCCEEEEECCCHHHHHHh
Confidence            345777888899999999773      2344555554443  2477899999998765543

>PRK11614 livF leucine/isoleucine/valine transporter ATP-binding subunit; Provisional

Probab=98.53  E-value=3.6e-07  Score=70.45  Aligned_cols=61  Identities=15%  Similarity=0.157  Sum_probs=37.8

Q ss_pred             hHHHHHHHhCCceEEEEEeCCC------CHHHHHHhhcCCCCCCCCcEEEEEeCCchhhhccCCcceEEe
Q 039455          120 GINLIRWRLCRKRVLVVLDDVD------QLEQLQALAGNHDWFGFGSRIIITTRDEHVLKGHGVTNIYKV  183 (216)
Q Consensus       120 ~~~~l~~~l~~~~~llvlDd~~------~~~~~~~l~~~~~~~~~~~~il~tsr~~~~~~~~~~~~~~~l  183 (216)
                      ..-.+...+..++-++++|+..      ....+..++..+.  ..+..||++||+.+....+ +++.+.+
T Consensus       144 qrl~la~al~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~--~~~~tiii~sH~~~~~~~~-~d~i~~l  210 (237)
T PRK11614        144 QMLAIGRALMSQPRLLLLDEPSLGLAPIIIQQIFDTIEQLR--EQGMTIFLVEQNANQALKL-ADRGYVL  210 (237)
T ss_pred             HHHHHHHHHHhCCCEEEEcCccccCCHHHHHHHHHHHHHHH--HCCCEEEEEeCcHHHHHhh-CCEEEEE
Confidence            3445777777888999999773      2233444443332  2467899999998755544 3444333

>PRK13538 cytochrome c biogenesis protein CcmA; Provisional

Probab=98.53  E-value=8.3e-07  Score=66.86  Aligned_cols=54  Identities=20%  Similarity=0.241  Sum_probs=36.6

Q ss_pred             hHHHHHHHhCCceEEEEEeCCC------CHHHHHHhhcCCCCCCCCcEEEEEeCCchhhhcc
Q 039455          120 GINLIRWRLCRKRVLVVLDDVD------QLEQLQALAGNHDWFGFGSRIIITTRDEHVLKGH  175 (216)
Q Consensus       120 ~~~~l~~~l~~~~~llvlDd~~------~~~~~~~l~~~~~~~~~~~~il~tsr~~~~~~~~  175 (216)
                      ..-.+...+..++-++++|+..      ..+.+..++..+.  ..+..||++||+......+
T Consensus       136 qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~--~~~~tiii~sh~~~~i~~~  195 (204)
T PRK13538        136 RRVALARLWLTRAPLWILDEPFTAIDKQGVARLEALLAQHA--EQGGMVILTTHQDLPVASD  195 (204)
T ss_pred             HHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHH--HCCCEEEEEecChhhhccC
Confidence            3445777888899999999873      2233444444332  2357899999998877765

>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase

Probab=98.53  E-value=1.6e-07  Score=72.66  Aligned_cols=93  Identities=18%  Similarity=0.122  Sum_probs=53.0

Q ss_pred             CCeeEEEEEecCCCcHHHHHHHHHHHhcC-CCCceEeeccccccccccCchHHHHHHHHHHHhhccc--cccch---hhh
Q 039455           47 DDVRFIGICGMGGIGKTTLAKVLYNTLKD-QFEASSFLANVREVSVTRGLVPLQEQLLSEVLMERNL--IIWDV---HKG  120 (216)
Q Consensus        47 ~~~~~i~I~G~~GiGKTtL~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~--~~~~~---~~~  120 (216)
                      ..+..++|+|++|+|||||++.+++.+.. +|+...|+......  .....++...+...+......  +....   ...
T Consensus        14 ~~Gqr~~I~G~~G~GKTTLlr~I~n~l~~~~fdv~~~v~vI~er--~~ev~el~~~I~~~~v~~~~~~~~~~~~~~~~~~   91 (249)
T cd01128          14 GKGQRGLIVAPPKAGKTTLLQSIANAITKNHPEVYLIVLLIDER--PEEVTDMQRSVKGEVIASTFDEPPERHVQVAEMV   91 (249)
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHHhccccccCCeEEEEEEccCC--CccHHHHHHHhccEEEEecCCCCHHHHHHHHHHH
Confidence            34689999999999999999999997654 46777787633321  134555555551111111000  00000   111


Q ss_pred             HHHHHHH-hCCceEEEEEeCCC
Q 039455          121 INLIRWR-LCRKRVLVVLDDVD  141 (216)
Q Consensus       121 ~~~l~~~-l~~~~~llvlDd~~  141 (216)
                      ....... -.+++.++++|++.
T Consensus        92 ~~~a~~~~~~G~~vll~iDei~  113 (249)
T cd01128          92 LEKAKRLVEHGKDVVILLDSIT  113 (249)
T ss_pred             HHHHHHHHHCCCCEEEEEECHH
Confidence            1112222 23689999999984

It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.

>TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA

Probab=98.52  E-value=7.3e-07  Score=71.21  Aligned_cols=51  Identities=18%  Similarity=0.190  Sum_probs=34.9

Q ss_pred             HHHHHHHhCCceEEEEEeCCC------CHHHHHHhhcCCCCCCCCcEEEEEeCCchhhhc
Q 039455          121 INLIRWRLCRKRVLVVLDDVD------QLEQLQALAGNHDWFGFGSRIIITTRDEHVLKG  174 (216)
Q Consensus       121 ~~~l~~~l~~~~~llvlDd~~------~~~~~~~l~~~~~~~~~~~~il~tsr~~~~~~~  174 (216)
                      .-.+...+..++-++++|+..      ..+.+..++..+.   .+..||++||+.+.+..
T Consensus       141 rv~la~al~~~p~lliLDEPt~gLD~~~~~~l~~~l~~~~---~~~tiii~sH~l~~~~~  197 (301)
T TIGR03522       141 RVGLAQALIHDPKVLILDEPTTGLDPNQLVEIRNVIKNIG---KDKTIILSTHIMQEVEA  197 (301)
T ss_pred             HHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHhc---CCCEEEEEcCCHHHHHH
Confidence            335777888899999999773      2244555555543   25789999999865443

Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.

>TIGR03771 anch_rpt_ABC anchored repeat-type ABC transporter, ATP-binding subunit

Probab=98.52  E-value=8.3e-07  Score=67.80  Aligned_cols=54  Identities=24%  Similarity=0.239  Sum_probs=36.4

Q ss_pred             hHHHHHHHhCCceEEEEEeCCC------CHHHHHHhhcCCCCCCCCcEEEEEeCCchhhhcc
Q 039455          120 GINLIRWRLCRKRVLVVLDDVD------QLEQLQALAGNHDWFGFGSRIIITTRDEHVLKGH  175 (216)
Q Consensus       120 ~~~~l~~~l~~~~~llvlDd~~------~~~~~~~l~~~~~~~~~~~~il~tsr~~~~~~~~  175 (216)
                      ..-.+...+..++-++++|+..      +...+..++..+.  ..+..+|++||+.+....+
T Consensus       120 qrv~laral~~~p~llilDEP~~~LD~~~~~~l~~~l~~~~--~~~~tvii~sH~~~~~~~~  179 (223)
T TIGR03771       120 QRVLVARALATRPSVLLLDEPFTGLDMPTQELLTELFIELA--GAGTAILMTTHDLAQAMAT  179 (223)
T ss_pred             HHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHH--HcCCEEEEEeCCHHHHHHh
Confidence            3446778888899999999773      2244444444332  3467899999998765543

This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown.

>PRK13409 putative ATPase RIL; Provisional

Probab=98.52  E-value=3.9e-07  Score=78.98  Aligned_cols=128  Identities=19%  Similarity=0.137  Sum_probs=68.9

Q ss_pred             CCeeEEEEEecCCCcHHHHHHHHHHHhcCCCCceEe---ecc-ccccc--cccCchHHH-------------HHHHHHHH
Q 039455           47 DDVRFIGICGMGGIGKTTLAKVLYNTLKDQFEASSF---LAN-VREVS--VTRGLVPLQ-------------EQLLSEVL  107 (216)
Q Consensus        47 ~~~~~i~I~G~~GiGKTtL~~~~~~~~~~~~~~~~~---~~~-~~~~~--~~~~~~~~~-------------~~l~~~~~  107 (216)
                      ..+.+++|.|++|+|||||++.+++........+.|   +.. .+...  ....+...+             ..++..+.
T Consensus       363 ~~Geiv~l~G~NGsGKSTLlk~L~Gl~~p~~G~I~~~~~i~y~~Q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~L~~l~  442 (590)
T PRK13409        363 YEGEVIGIVGPNGIGKTTFAKLLAGVLKPDEGEVDPELKISYKPQYIKPDYDGTVEDLLRSITDDLGSSYYKSEIIKPLQ  442 (590)
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEEeeeEEEecccccCCCCCcHHHHHHHHhhhcChHHHHHHHHHHCC
Confidence            356799999999999999999999865432211111   000 01100  000111111             11111110


Q ss_pred             h-----hccccccchhhhHHHHHHHhCCceEEEEEeCCC------CHHHHHHhhcCCCCCCCCcEEEEEeCCchhhhcc
Q 039455          108 M-----ERNLIIWDVHKGINLIRWRLCRKRVLVVLDDVD------QLEQLQALAGNHDWFGFGSRIIITTRDEHVLKGH  175 (216)
Q Consensus       108 ~-----~~~~~~~~~~~~~~~l~~~l~~~~~llvlDd~~------~~~~~~~l~~~~~~~~~~~~il~tsr~~~~~~~~  175 (216)
                      .     ......+..+.....+..++..++-++++|+.-      ....+..++..+.. ..+..+|++||+.+++..+
T Consensus       443 l~~~~~~~~~~LSGGe~QRvaiAraL~~~p~llLLDEPt~~LD~~~~~~l~~~l~~l~~-~~g~tviivsHD~~~~~~~  520 (590)
T PRK13409        443 LERLLDKNVKDLSGGELQRVAIAACLSRDADLYLLDEPSAHLDVEQRLAVAKAIRRIAE-EREATALVVDHDIYMIDYI  520 (590)
T ss_pred             CHHHHhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHH-hCCCEEEEEeCCHHHHHHh
Confidence            0     000112223334446788888999999999773      22334444444321 2367899999998876665

>cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP

Probab=98.52  E-value=4.7e-07  Score=68.54  Aligned_cols=62  Identities=11%  Similarity=0.073  Sum_probs=39.0

Q ss_pred             hHHHHHHHhCCceEEEEEeCCCC------HHHHHHhhcCCCCCCCCcEEEEEeCCchhhhccCCcceEEe
Q 039455          120 GINLIRWRLCRKRVLVVLDDVDQ------LEQLQALAGNHDWFGFGSRIIITTRDEHVLKGHGVTNIYKV  183 (216)
Q Consensus       120 ~~~~l~~~l~~~~~llvlDd~~~------~~~~~~l~~~~~~~~~~~~il~tsr~~~~~~~~~~~~~~~l  183 (216)
                      ..-.+...+..++-++++|+..+      .+.+..++..+.. ..+..||++||+.+....+ ++..+.+
T Consensus       135 qrv~ia~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~~~tii~~sH~~~~~~~~-~d~i~~l  202 (211)
T cd03298         135 QRVALARVLVRDKPVLLLDEPFAALDPALRAEMLDLVLDLHA-ETKMTVLMVTHQPEDAKRL-AQRVVFL  202 (211)
T ss_pred             HHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHH-hcCCEEEEEecCHHHHHhh-hCEEEEE
Confidence            34457777788899999998732      2333343333210 2367899999998876654 3454444

Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea

Probab=98.52  E-value=6.9e-07  Score=70.23  Aligned_cols=56  Identities=11%  Similarity=-0.008  Sum_probs=36.0

Q ss_pred             hhHHHHHHHhCCceEEEEEeCCC------CHHHHHHhhcCCCCCCCCcEEEEEeCCchhhhcc
Q 039455          119 KGINLIRWRLCRKRVLVVLDDVD------QLEQLQALAGNHDWFGFGSRIIITTRDEHVLKGH  175 (216)
Q Consensus       119 ~~~~~l~~~l~~~~~llvlDd~~------~~~~~~~l~~~~~~~~~~~~il~tsr~~~~~~~~  175 (216)
                      ...-.+...+..++-++++|+.-      ....+..++..+.. ..+..||++||+.+....+
T Consensus       166 ~qrv~lAral~~~p~illLDEPt~~LD~~~~~~l~~~l~~~~~-~~g~tiii~tH~~~~~~~~  227 (269)
T cd03294         166 QQRVGLARALAVDPDILLMDEAFSALDPLIRREMQDELLRLQA-ELQKTIVFITHDLDEALRL  227 (269)
T ss_pred             HHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHH-hcCCEEEEEeCCHHHHHHh
Confidence            33445788888899999999873      22334444433321 2367899999998765443

This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>KOG0744 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]

Probab=98.51  E-value=1.2e-06  Score=68.92  Aligned_cols=136  Identities=21%  Similarity=0.229  Sum_probs=72.4

Q ss_pred             eeEEEEEecCCCcHHHHHHHHHHHhc----CCCCceEeeccccccccccCchHHHHHHHHHHHhhccccccchhhhHHHH
Q 039455           49 VRFIGICGMGGIGKTTLAKVLYNTLK----DQFEASSFLANVREVSVTRGLVPLQEQLLSEVLMERNLIIWDVHKGINLI  124 (216)
Q Consensus        49 ~~~i~I~G~~GiGKTtL~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l  124 (216)
                      .+.|.++||+|+|||+|-+.+++++.    .+|.....+.        -+--.++...+.+    .+   --...+.+.+
T Consensus       177 NRliLlhGPPGTGKTSLCKaLaQkLSIR~~~~y~~~~liE--------inshsLFSKWFsE----Sg---KlV~kmF~kI  241 (423)
T KOG0744|consen  177 NRLILLHGPPGTGKTSLCKALAQKLSIRTNDRYYKGQLIE--------INSHSLFSKWFSE----SG---KLVAKMFQKI  241 (423)
T ss_pred             eeEEEEeCCCCCChhHHHHHHHHhheeeecCccccceEEE--------EehhHHHHHHHhh----hh---hHHHHHHHHH
Confidence            67999999999999999999999653    3343333331        1111222222221    10   0123334445


Q ss_pred             HHHhCCce--EEEEEeCCCCHHH-----------------HHHhhcCCCCC--CCCcEEEEEeCCchhhh---ccCCcce
Q 039455          125 RWRLCRKR--VLVVLDDVDQLEQ-----------------LQALAGNHDWF--GFGSRIIITTRDEHVLK---GHGVTNI  180 (216)
Q Consensus       125 ~~~l~~~~--~llvlDd~~~~~~-----------------~~~l~~~~~~~--~~~~~il~tsr~~~~~~---~~~~~~~  180 (216)
                      ......+.  +.+.+|++.++..                 +..++-.+...  .++.-||.||...+-.+   .-..+-+
T Consensus       242 ~ELv~d~~~lVfvLIDEVESLa~aR~s~~S~~EpsDaIRvVNalLTQlDrlK~~~NvliL~TSNl~~siD~AfVDRADi~  321 (423)
T KOG0744|consen  242 QELVEDRGNLVFVLIDEVESLAAARTSASSRNEPSDAIRVVNALLTQLDRLKRYPNVLILATSNLTDSIDVAFVDRADIV  321 (423)
T ss_pred             HHHHhCCCcEEEEEeHHHHHHHHHHHhhhcCCCCchHHHHHHHHHHHHHHhccCCCEEEEeccchHHHHHHHhhhHhhhe
Confidence            55555543  4556898854421                 22222111111  12343444443222111   1125677


Q ss_pred             EEecCCChHHHHHHHhhhh
Q 039455          181 YKVRGLDYVEALQLFHLKV  199 (216)
Q Consensus       181 ~~l~~l~~~~~~~ll~~~~  199 (216)
                      +.+.|-+.+...++++.+.
T Consensus       322 ~yVG~Pt~~ai~~Ilksci  340 (423)
T KOG0744|consen  322 FYVGPPTAEAIYEILKSCI  340 (423)
T ss_pred             eecCCccHHHHHHHHHHHH
Confidence            8899999998888887765

>cd03267 ABC_NatA_like Similar in sequence to NatA, this is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake

Probab=98.51  E-value=6.9e-07  Score=68.85  Aligned_cols=61  Identities=11%  Similarity=0.170  Sum_probs=39.3

Q ss_pred             HHHHHHHhCCceEEEEEeCCCC------HHHHHHhhcCCCCCCCCcEEEEEeCCchhhhccCCcceEEe
Q 039455          121 INLIRWRLCRKRVLVVLDDVDQ------LEQLQALAGNHDWFGFGSRIIITTRDEHVLKGHGVTNIYKV  183 (216)
Q Consensus       121 ~~~l~~~l~~~~~llvlDd~~~------~~~~~~l~~~~~~~~~~~~il~tsr~~~~~~~~~~~~~~~l  183 (216)
                      .-.+...+..++-++++|+.-.      ...+..++..+.. ..+..||++||+.+.+..+ +++.+.+
T Consensus       161 rl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~~~tiiivsH~~~~~~~~-~d~i~~l  227 (236)
T cd03267         161 RAEIAAALLHEPEILFLDEPTIGLDVVAQENIRNFLKEYNR-ERGTTVLLTSHYMKDIEAL-ARRVLVI  227 (236)
T ss_pred             HHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHh-cCCCEEEEEecCHHHHHHh-CCEEEEE
Confidence            3357777888899999998732      2344444443321 2357899999999876665 4455544

NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single intergral membrane protein.

>KOG0738 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]

Probab=98.51  E-value=2.4e-06  Score=68.66  Aligned_cols=70  Identities=20%  Similarity=0.243  Sum_probs=47.0

Q ss_pred             HHHHHHHHHHhhcCCCCCCcccccccchhHHHHHHHHHhcC----------CCCeeEEEEEecCCCcHHHHHHHHHHHhc
Q 039455            5 LIKDIVKEISKRLNPTFPSAVDGLVGIASRMEKMNGYLEAG----------LDDVRFIGICGMGGIGKTTLAKVLYNTLK   74 (216)
Q Consensus         5 ~~~~~~~~~~~~~~~~~~~~~~~~vgR~~~~~~l~~~l~~~----------~~~~~~i~I~G~~GiGKTtL~~~~~~~~~   74 (216)
                      |++-+-+++.++.+.   .......|-++..+-|...+.-+          ..-=+.++++||+|+|||.||++++.+..
T Consensus       194 Lve~lerdIl~~np~---ikW~DIagl~~AK~lL~EAVvlPi~mPe~F~GirrPWkgvLm~GPPGTGKTlLAKAvATEc~  270 (491)
T KOG0738|consen  194 LVEALERDILQRNPN---IKWDDIAGLHEAKKLLKEAVVLPIWMPEFFKGIRRPWKGVLMVGPPGTGKTLLAKAVATECG  270 (491)
T ss_pred             HHHHHHHHHhccCCC---cChHhhcchHHHHHHHHHHHhhhhhhHHHHhhcccccceeeeeCCCCCcHHHHHHHHHHhhc
Confidence            333333444443332   34667889998888887754311          22245899999999999999999998876


Q ss_pred             CCC
Q 039455           75 DQF   77 (216)
Q Consensus        75 ~~~   77 (216)
                      ..|
T Consensus       271 tTF  273 (491)
T KOG0738|consen  271 TTF  273 (491)
T ss_pred             CeE
Confidence            443

>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component

Probab=98.51  E-value=1.1e-06  Score=66.56  Aligned_cols=60  Identities=10%  Similarity=0.098  Sum_probs=39.2

Q ss_pred             hHHHHHHHhCCceEEEEEeCCC------CHHHHHHhhcCCCCCCCCcEEEEEeCCchhhhccCCcceEEe
Q 039455          120 GINLIRWRLCRKRVLVVLDDVD------QLEQLQALAGNHDWFGFGSRIIITTRDEHVLKGHGVTNIYKV  183 (216)
Q Consensus       120 ~~~~l~~~l~~~~~llvlDd~~------~~~~~~~l~~~~~~~~~~~~il~tsr~~~~~~~~~~~~~~~l  183 (216)
                      ..-.+...+..++-++++|+.-      +.+.+..++..+.  . +..+|++||+.+....+ +++.+.+
T Consensus       137 qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~--~-~~tii~vsH~~~~~~~~-~d~i~~l  202 (211)
T cd03264         137 RRVGIAQALVGDPSILIVDEPTAGLDPEERIRFRNLLSELG--E-DRIVILSTHIVEDVESL-CNQVAVL  202 (211)
T ss_pred             HHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHh--C-CCEEEEEcCCHHHHHHh-CCEEEEE
Confidence            3445777888899999999773      2234444554443  2 37899999998876554 3444444

The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK09183 transposase/IS protein; Provisional

Probab=98.51  E-value=5.1e-07  Score=70.46  Aligned_cols=36  Identities=28%  Similarity=0.176  Sum_probs=27.2

Q ss_pred             CeeEEEEEecCCCcHHHHHHHHHHHhcCCCCceEee
Q 039455           48 DVRFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFL   83 (216)
Q Consensus        48 ~~~~i~I~G~~GiGKTtL~~~~~~~~~~~~~~~~~~   83 (216)
                      .+..++|+||+|+|||+|+..++.........+.++
T Consensus       101 ~~~~v~l~Gp~GtGKThLa~al~~~a~~~G~~v~~~  136 (259)
T PRK09183        101 RNENIVLLGPSGVGKTHLAIALGYEAVRAGIKVRFT  136 (259)
T ss_pred             cCCeEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEE
Confidence            346888999999999999999988754443344444

>PRK11000 maltose/maltodextrin transporter ATP-binding protein; Provisional

Probab=98.51  E-value=5.1e-07  Score=74.05  Aligned_cols=57  Identities=16%  Similarity=0.106  Sum_probs=36.1

Q ss_pred             hhhHHHHHHHhCCceEEEEEeCCCC------HHHHHHhhcCCCCCCCCcEEEEEeCCchhhhcc
Q 039455          118 HKGINLIRWRLCRKRVLVVLDDVDQ------LEQLQALAGNHDWFGFGSRIIITTRDEHVLKGH  175 (216)
Q Consensus       118 ~~~~~~l~~~l~~~~~llvlDd~~~------~~~~~~l~~~~~~~~~~~~il~tsr~~~~~~~~  175 (216)
                      +...-.+.+.+..++-+|++|+.-+      ...+..++..+.. ..+..+|++||+.+.+..+
T Consensus       138 q~QRvaLAraL~~~P~lLLLDEPts~LD~~~~~~l~~~L~~l~~-~~g~tvI~vTHd~~~~~~~  200 (369)
T PRK11000        138 QRQRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHK-RLGRTMIYVTHDQVEAMTL  200 (369)
T ss_pred             HHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHH-HhCCEEEEEeCCHHHHHHh
Confidence            3444568888888999999998732      2233333332210 1367899999998765543

>cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system

Probab=98.51  E-value=5.5e-07  Score=69.56  Aligned_cols=62  Identities=15%  Similarity=0.134  Sum_probs=38.5

Q ss_pred             hHHHHHHHhCCceEEEEEeCCCC------HHHHHHhhcCCCCCCCCcEEEEEeCCchhhhccCCcceEEe
Q 039455          120 GINLIRWRLCRKRVLVVLDDVDQ------LEQLQALAGNHDWFGFGSRIIITTRDEHVLKGHGVTNIYKV  183 (216)
Q Consensus       120 ~~~~l~~~l~~~~~llvlDd~~~------~~~~~~l~~~~~~~~~~~~il~tsr~~~~~~~~~~~~~~~l  183 (216)
                      ..-.+...+..++-++++|+..+      ...+..++..+.. ..+..||++||+.+....+ ++..+.+
T Consensus       151 qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~~~tii~~tH~~~~~~~~-~d~v~~l  218 (241)
T cd03256         151 QRVAIARALMQQPKLILADEPVASLDPASSRQVMDLLKRINR-EEGITVIVSLHQVDLAREY-ADRIVGL  218 (241)
T ss_pred             HHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHHH-hcCCEEEEEeCCHHHHHHh-CCEEEEE
Confidence            34457777888889999998732      2333333333220 2367899999998776654 4444444

Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family

Probab=98.51  E-value=1.2e-06  Score=75.79  Aligned_cols=51  Identities=16%  Similarity=0.133  Sum_probs=34.8

Q ss_pred             hHHHHHHHhCCceEEEEEeCCC------CHHHHHHhhcCCCCCCCCcEEEEEeCCchhhhcc
Q 039455          120 GINLIRWRLCRKRVLVVLDDVD------QLEQLQALAGNHDWFGFGSRIIITTRDEHVLKGH  175 (216)
Q Consensus       120 ~~~~l~~~l~~~~~llvlDd~~------~~~~~~~l~~~~~~~~~~~~il~tsr~~~~~~~~  175 (216)
                      ....+...+..++-++++|+..      ....+..++..+     +..||++||+.+....+
T Consensus       168 qrv~la~al~~~p~lLLLDEPt~~LD~~~~~~l~~~L~~~-----~~tvIiisHd~~~~~~~  224 (552)
T TIGR03719       168 RRVALCRLLLSKPDMLLLDEPTNHLDAESVAWLEQHLQEY-----PGTVVAVTHDRYFLDNV  224 (552)
T ss_pred             HHHHHHHHHhcCCCEEEEcCCCCCCChHHHHHHHHHHHhC-----CCeEEEEeCCHHHHHhh
Confidence            3445777788888999999773      223444444443     24799999998876654

Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.

>COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=98.51  E-value=6.1e-07  Score=68.73  Aligned_cols=68  Identities=19%  Similarity=0.120  Sum_probs=44.2

Q ss_pred             ccchhhhHHHHHHHhCCceEEEEEeCCCC------HHHHHHhhcCCCCCCCCcEEEEEeCCchhhhccCCcceEEe
Q 039455          114 IWDVHKGINLIRWRLCRKRVLVVLDDVDQ------LEQLQALAGNHDWFGFGSRIIITTRDEHVLKGHGVTNIYKV  183 (216)
Q Consensus       114 ~~~~~~~~~~l~~~l~~~~~llvlDd~~~------~~~~~~l~~~~~~~~~~~~il~tsr~~~~~~~~~~~~~~~l  183 (216)
                      .+..++..-.+...+..++-++|||+.-+      ...+..++..+.. ..+.++|++||+.+....+ ++..+.+
T Consensus       139 LSGGqkqRvaIA~vLa~~P~iliLDEPta~LD~~~~~~l~~~l~~L~~-~~~~tii~~tHd~~~~~~~-ad~v~vl  212 (235)
T COG1122         139 LSGGQKQRVAIAGVLAMGPEILLLDEPTAGLDPKGRRELLELLKKLKE-EGGKTIIIVTHDLELVLEY-ADRVVVL  212 (235)
T ss_pred             cCCcceeeHHhhHHHHcCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHh-cCCCeEEEEeCcHHHHHhh-CCEEEEE
Confidence            34455666678899999999999998732      2344444444431 2357899999998877665 3343333

>COG1127 Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]

Probab=98.50  E-value=1.1e-06  Score=66.25  Aligned_cols=56  Identities=16%  Similarity=0.169  Sum_probs=38.1

Q ss_pred             hhHHHHHHHhCCceEEEEEeCCC------CHHHHHHhhcCCCCCCCCcEEEEEeCCchhhhcc
Q 039455          119 KGINLIRWRLCRKRVLVVLDDVD------QLEQLQALAGNHDWFGFGSRIIITTRDEHVLKGH  175 (216)
Q Consensus       119 ~~~~~l~~~l~~~~~llvlDd~~------~~~~~~~l~~~~~~~~~~~~il~tsr~~~~~~~~  175 (216)
                      .....+.+++.-.|-+|++|+..      +...+..+...+.. .-+.++++.||+.+-...+
T Consensus       151 ~KRvaLARAialdPell~~DEPtsGLDPI~a~~~~~LI~~L~~-~lg~T~i~VTHDl~s~~~i  212 (263)
T COG1127         151 RKRVALARAIALDPELLFLDEPTSGLDPISAGVIDELIRELND-ALGLTVIMVTHDLDSLLTI  212 (263)
T ss_pred             HHHHHHHHHHhcCCCEEEecCCCCCCCcchHHHHHHHHHHHHH-hhCCEEEEEECChHHHHhh
Confidence            34567899999999999999763      33445555544432 2468899999987554443

>TIGR03873 F420-0_ABC_ATP proposed F420-0 ABC transporter, ATP-binding protein

Probab=98.50  E-value=8.9e-07  Score=69.06  Aligned_cols=53  Identities=15%  Similarity=0.156  Sum_probs=36.0

Q ss_pred             HHHHHHHhCCceEEEEEeCCC------CHHHHHHhhcCCCCCCCCcEEEEEeCCchhhhcc
Q 039455          121 INLIRWRLCRKRVLVVLDDVD------QLEQLQALAGNHDWFGFGSRIIITTRDEHVLKGH  175 (216)
Q Consensus       121 ~~~l~~~l~~~~~llvlDd~~------~~~~~~~l~~~~~~~~~~~~il~tsr~~~~~~~~  175 (216)
                      .-.+...+..++-++++|+..      ..+.+..++..+.  ..+..||++||+.+....+
T Consensus       145 rl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~--~~~~tiii~sH~~~~~~~~  203 (256)
T TIGR03873       145 RVHVARALAQEPKLLLLDEPTNHLDVRAQLETLALVRELA--ATGVTVVAALHDLNLAASY  203 (256)
T ss_pred             HHHHHHHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHH--hcCCEEEEEeCCHHHHHHh
Confidence            445777778888999999773      2344444444443  2367899999998776543

This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter.

>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]

Probab=98.50  E-value=5.3e-06  Score=66.75  Aligned_cols=150  Identities=19%  Similarity=0.115  Sum_probs=82.4

Q ss_pred             ccccchhHHHHHHHHHhcCCCCeeEEEEEecCCCcHHHHHHHHHHHhcCCC---------------------CceEeecc
Q 039455           27 GLVGIASRMEKMNGYLEAGLDDVRFIGICGMGGIGKTTLAKVLYNTLKDQF---------------------EASSFLAN   85 (216)
Q Consensus        27 ~~vgR~~~~~~l~~~l~~~~~~~~~i~I~G~~GiGKTtL~~~~~~~~~~~~---------------------~~~~~~~~   85 (216)
                      .++|-+.....+..+..........+.++||+|+||||+|..+++.+-...                     +.+..+. 
T Consensus         2 ~~~~~~~~~~~l~~~~~~~~~~~halL~~Gp~G~Gktt~a~~lA~~l~~~~~~~~~~~~~~~~~~~~~~~~~~d~lel~-   80 (325)
T COG0470           2 ELVPWQEAVKRLLVQALESGRLPHALLFYGPPGVGKTTAALALAKELLCENPTGLLPCGHCRSCKLIPAGNHPDFLELN-   80 (325)
T ss_pred             CcccchhHHHHHHHHHHhcCCCCceeeeeCCCCCCHHHHHHHHHHHHhCCCcccCCcccchhhhhHHhhcCCCceEEec-
Confidence            457778888888888775433334599999999999999999998765322                     2222222 


Q ss_pred             ccccccccCchHHHHHHHHHHHhhccccccchhhhHHHHHHHhCCceEEEEEeCCCCH--HHHHHhhcCCCCCCCCcEEE
Q 039455           86 VREVSVTRGLVPLQEQLLSEVLMERNLIIWDVHKGINLIRWRLCRKRVLVVLDDVDQL--EQLQALAGNHDWFGFGSRII  163 (216)
Q Consensus        86 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~llvlDd~~~~--~~~~~l~~~~~~~~~~~~il  163 (216)
                      .++........+....+.......                 ...++.-+++||+++..  +....+...+..-...+.++
T Consensus        81 ~s~~~~~~i~~~~vr~~~~~~~~~-----------------~~~~~~kviiidead~mt~~A~nallk~lEep~~~~~~i  143 (325)
T COG0470          81 PSDLRKIDIIVEQVRELAEFLSES-----------------PLEGGYKVVIIDEADKLTEDAANALLKTLEEPPKNTRFI  143 (325)
T ss_pred             ccccCCCcchHHHHHHHHHHhccC-----------------CCCCCceEEEeCcHHHHhHHHHHHHHHHhccCCCCeEEE
Confidence            111000000111111111111000                 00245679999999865  33445554444335677788


Q ss_pred             EEeCCc-hhhhcc-CCcceEEecCCChHHHHHH
Q 039455          164 ITTRDE-HVLKGH-GVTNIYKVRGLDYVEALQL  194 (216)
Q Consensus       164 ~tsr~~-~~~~~~-~~~~~~~l~~l~~~~~~~l  194 (216)
                      ++|..+ .+...+ .....++++|.+.......
T Consensus       144 l~~n~~~~il~tI~SRc~~i~f~~~~~~~~i~~  176 (325)
T COG0470         144 LITNDPSKILPTIRSRCQRIRFKPPSRLEAIAW  176 (325)
T ss_pred             EEcCChhhccchhhhcceeeecCCchHHHHHHH
Confidence            888754 233333 2346677877554444333

>cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter

Probab=98.50  E-value=5.1e-07  Score=67.83  Aligned_cols=61  Identities=16%  Similarity=0.170  Sum_probs=37.9

Q ss_pred             hhHHHHHHHhCCceEEEEEeCCC------CHHHHHHhhcCCCCCCCCcEEEEEeCCchhhhccCCcceEE
Q 039455          119 KGINLIRWRLCRKRVLVVLDDVD------QLEQLQALAGNHDWFGFGSRIIITTRDEHVLKGHGVTNIYK  182 (216)
Q Consensus       119 ~~~~~l~~~l~~~~~llvlDd~~------~~~~~~~l~~~~~~~~~~~~il~tsr~~~~~~~~~~~~~~~  182 (216)
                      ...-.+...+..++-++++|+.-      ..+.+..++..+.  ..+..+|++||+....... +.+.+.
T Consensus       131 ~qrl~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~--~~g~tiii~sH~~~~~~~~-~~~~~~  197 (201)
T cd03231         131 QRRVALARLLLSGRPLWILDEPTTALDKAGVARFAEAMAGHC--ARGGMVVLTTHQDLGLSEA-GARELD  197 (201)
T ss_pred             HHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHH--hCCCEEEEEecCchhhhhc-cceeEe
Confidence            33445777888888999999873      2233444443332  3467899999987654443 444443

The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE.

>PRK11153 metN DL-methionine transporter ATP-binding subunit; Provisional

Probab=98.49  E-value=7.1e-07  Score=72.52  Aligned_cols=57  Identities=18%  Similarity=0.235  Sum_probs=36.8

Q ss_pred             hhhHHHHHHHhCCceEEEEEeCCCC------HHHHHHhhcCCCCCCCCcEEEEEeCCchhhhcc
Q 039455          118 HKGINLIRWRLCRKRVLVVLDDVDQ------LEQLQALAGNHDWFGFGSRIIITTRDEHVLKGH  175 (216)
Q Consensus       118 ~~~~~~l~~~l~~~~~llvlDd~~~------~~~~~~l~~~~~~~~~~~~il~tsr~~~~~~~~  175 (216)
                      +...-.+...+..++-++++|+.-+      ...+..++..+.. ..+..||++||+.+....+
T Consensus       145 q~qRv~lAraL~~~p~iLlLDEPts~LD~~~~~~l~~~L~~l~~-~~g~tiilvtH~~~~i~~~  207 (343)
T PRK11153        145 QKQRVAIARALASNPKVLLCDEATSALDPATTRSILELLKDINR-ELGLTIVLITHEMDVVKRI  207 (343)
T ss_pred             HHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHH-hcCCEEEEEeCCHHHHHHh
Confidence            3344467888888999999998732      2334444433321 2367899999998776554

>PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional

Probab=98.49  E-value=1e-06  Score=68.04  Aligned_cols=28  Identities=25%  Similarity=0.413  Sum_probs=24.4

Q ss_pred             CCeeEEEEEecCCCcHHHHHHHHHHHhc
Q 039455           47 DDVRFIGICGMGGIGKTTLAKVLYNTLK   74 (216)
Q Consensus        47 ~~~~~i~I~G~~GiGKTtL~~~~~~~~~   74 (216)
                      ..+..++|.|++|+|||||++.+++...
T Consensus        27 ~~Ge~~~l~G~nGsGKSTLl~~l~G~~~   54 (241)
T PRK10895         27 NSGEIVGLLGPNGAGKTTTFYMVVGIVP   54 (241)
T ss_pred             cCCcEEEEECCCCCCHHHHHHHHhCCCC
Confidence            3468999999999999999999998543

>PRK13647 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=98.49  E-value=3.6e-07  Score=71.98  Aligned_cols=54  Identities=22%  Similarity=0.213  Sum_probs=36.5

Q ss_pred             hhHHHHHHHhCCceEEEEEeCCCC------HHHHHHhhcCCCCCCCCcEEEEEeCCchhhhc
Q 039455          119 KGINLIRWRLCRKRVLVVLDDVDQ------LEQLQALAGNHDWFGFGSRIIITTRDEHVLKG  174 (216)
Q Consensus       119 ~~~~~l~~~l~~~~~llvlDd~~~------~~~~~~l~~~~~~~~~~~~il~tsr~~~~~~~  174 (216)
                      .....+...+..++-++++|+...      ...+..++..+.  ..+..||++||+.+.+..
T Consensus       144 ~qrv~laraL~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~--~~g~tili~tH~~~~~~~  203 (274)
T PRK13647        144 KKRVAIAGVLAMDPDVIVLDEPMAYLDPRGQETLMEILDRLH--NQGKTVIVATHDVDLAAE  203 (274)
T ss_pred             HHHHHHHHHHHcCCCEEEEECCCcCCCHHHHHHHHHHHHHHH--HCCCEEEEEeCCHHHHHH
Confidence            334467888888999999998732      234444444433  236889999999876544

>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional

Probab=98.49  E-value=4.6e-07  Score=77.52  Aligned_cols=56  Identities=18%  Similarity=0.193  Sum_probs=37.6

Q ss_pred             hhhHHHHHHHhCCceEEEEEeCCC------CHHHHHHhhcCCCCCCCCcEEEEEeCCchhhhcc
Q 039455          118 HKGINLIRWRLCRKRVLVVLDDVD------QLEQLQALAGNHDWFGFGSRIIITTRDEHVLKGH  175 (216)
Q Consensus       118 ~~~~~~l~~~l~~~~~llvlDd~~------~~~~~~~l~~~~~~~~~~~~il~tsr~~~~~~~~  175 (216)
                      +...-.+...+..++-++++|+.-      ....+..++..+.  ..+..||++||+.+....+
T Consensus       145 ~~qrv~la~aL~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~--~~g~tiiivtHd~~~~~~~  206 (510)
T PRK15439        145 DRQIVEILRGLMRDSRILILDEPTASLTPAETERLFSRIRELL--AQGVGIVFISHKLPEIRQL  206 (510)
T ss_pred             HHHHHHHHHHHHcCCCEEEEECCCCCCCHHHHHHHHHHHHHHH--HCCCEEEEEeCCHHHHHHh
Confidence            344556788888899999999873      2234444444433  2467899999998765543

>cd03297 ABC_ModC_molybdenum_transporter ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB

Probab=98.49  E-value=9e-07  Score=67.14  Aligned_cols=62  Identities=16%  Similarity=0.045  Sum_probs=38.6

Q ss_pred             hHHHHHHHhCCceEEEEEeCCCC------HHHHHHhhcCCCCCCCCcEEEEEeCCchhhhccCCcceEEe
Q 039455          120 GINLIRWRLCRKRVLVVLDDVDQ------LEQLQALAGNHDWFGFGSRIIITTRDEHVLKGHGVTNIYKV  183 (216)
Q Consensus       120 ~~~~l~~~l~~~~~llvlDd~~~------~~~~~~l~~~~~~~~~~~~il~tsr~~~~~~~~~~~~~~~l  183 (216)
                      ..-.+...+..++-++++|+.-.      .+.+..++..+.. ..+..||++||+.+....+ ++..+.+
T Consensus       138 qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~~~tiii~sH~~~~~~~~-~d~i~~l  205 (214)
T cd03297         138 QRVALARALAAQPELLLLDEPFSALDRALRLQLLPELKQIKK-NLNIPVIFVTHDLSEAEYL-ADRIVVM  205 (214)
T ss_pred             HHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHH-HcCcEEEEEecCHHHHHHh-cCEEEEE
Confidence            34457778888999999998732      2333344333321 1267899999998776554 3444444

ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd01131 PilT Pilus retraction ATPase PilT

Probab=98.49  E-value=6.4e-07  Score=67.16  Aligned_cols=112  Identities=13%  Similarity=0.161  Sum_probs=64.5

Q ss_pred             eEEEEEecCCCcHHHHHHHHHHHhcCCCCceEeeccccccccccCchHHHHHHHHHHHhhccccccchhhhHHHHHHHhC
Q 039455           50 RFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLANVREVSVTRGLVPLQEQLLSEVLMERNLIIWDVHKGINLIRWRLC  129 (216)
Q Consensus        50 ~~i~I~G~~GiGKTtL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~  129 (216)
                      ..++|+||+|+||||++..++..+.......++..  .... ...... ...+..    .... ..+.......+...+.
T Consensus         2 GlilI~GptGSGKTTll~~ll~~~~~~~~~~i~t~--e~~~-E~~~~~-~~~~i~----q~~v-g~~~~~~~~~i~~aLr   72 (198)
T cd01131           2 GLVLVTGPTGSGKSTTLAAMIDYINKNKTHHILTI--EDPI-EFVHES-KRSLIN----QREV-GLDTLSFENALKAALR   72 (198)
T ss_pred             cEEEEECCCCCCHHHHHHHHHHHhhhcCCcEEEEE--cCCc-cccccC-ccceee----eccc-CCCccCHHHHHHHHhc
Confidence            57999999999999999998887754433333321  1100 000000 000000    0000 0112234556777788


Q ss_pred             CceEEEEEeCCCCHHHHHHhhcCCCCCCCCcEEEEEeCCchhhh
Q 039455          130 RKRVLVVLDDVDQLEQLQALAGNHDWFGFGSRIIITTRDEHVLK  173 (216)
Q Consensus       130 ~~~~llvlDd~~~~~~~~~l~~~~~~~~~~~~il~tsr~~~~~~  173 (216)
                      ..+-++++|++...+.+..++...   ..|..++.|+|..+...
T Consensus        73 ~~pd~ii~gEird~e~~~~~l~~a---~~G~~v~~t~Ha~~~~~  113 (198)
T cd01131          73 QDPDVILVGEMRDLETIRLALTAA---ETGHLVMSTLHTNSAAK  113 (198)
T ss_pred             CCcCEEEEcCCCCHHHHHHHHHHH---HcCCEEEEEecCCcHHH
Confidence            888999999998776665544332   24566888999775443

PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.

>PF10443 RNA12: RNA12 protein; InterPro: IPR018850 Mitochondrial escape protein 2 (also known as RNA12) plays a role in maintaining the mitochondrial genome and in controlling mtDNA escape [, ]

Probab=98.49  E-value=2.2e-06  Score=70.08  Aligned_cols=39  Identities=23%  Similarity=0.379  Sum_probs=32.9

Q ss_pred             chhHHHHHHHHHhcCCCCeeEEEEEecCCCcHHHHH-HHHHH
Q 039455           31 IASRMEKMNGYLEAGLDDVRFIGICGMGGIGKTTLA-KVLYN   71 (216)
Q Consensus        31 R~~~~~~l~~~l~~~~~~~~~i~I~G~~GiGKTtL~-~~~~~   71 (216)
                      |.+.+++|..||....  ...|+|+||.|+||+.|+ .++..
T Consensus         1 R~e~~~~L~~wL~e~~--~TFIvV~GPrGSGK~elV~d~~L~   40 (431)
T PF10443_consen    1 RKEAIEQLKSWLNENP--NTFIVVQGPRGSGKRELVMDHVLK   40 (431)
T ss_pred             CchHHHHHHHHHhcCC--CeEEEEECCCCCCccHHHHHHHHh
Confidence            6678899999998753  369999999999999999 66665

It is also involved in the regulation of mtDNA nucleotide structure and number []. Additionally, this protein have a dispensable role in the early maturation of pre-rRNA [].

>COG4152 ABC-type uncharacterized transport system, ATPase component [General function prediction only]

Probab=98.49  E-value=6.4e-07  Score=67.79  Aligned_cols=127  Identities=18%  Similarity=0.187  Sum_probs=71.2

Q ss_pred             CCeeEEEEEecCCCcHHHHHHHHHHHhcCCCCceEeec---------cccccccccCch---HHHHHH--HHHHHhhc--
Q 039455           47 DDVRFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLA---------NVREVSVTRGLV---PLQEQL--LSEVLMER--  110 (216)
Q Consensus        47 ~~~~~i~I~G~~GiGKTtL~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~---~~~~~l--~~~~~~~~--  110 (216)
                      +.+.+.++.|++|.||||..+.+.+-+...-....|-.         ..+.+++.+.+.   ....++  +..+.+..  
T Consensus        26 ~~G~i~GllG~NGAGKTTtfRmILglle~~~G~I~~~g~~~~~~~~~rIGyLPEERGLy~k~tv~dql~yla~LkGm~~~  105 (300)
T COG4152          26 PPGEIFGLLGPNGAGKTTTFRMILGLLEPTEGEITWNGGPLSQEIKNRIGYLPEERGLYPKMTVEDQLKYLAELKGMPKA  105 (300)
T ss_pred             cCCeEEEeecCCCCCccchHHHHhccCCccCceEEEcCcchhhhhhhhcccChhhhccCccCcHHHHHHHHHHhcCCcHH
Confidence            45789999999999999999999987655434445542         122233322221   111111  11111110  


Q ss_pred             -------------c---ccc------cchhhhHHHHHHHhCCceEEEEEeCCC------CHHHHHHhhcCCCCCCCCcEE
Q 039455          111 -------------N---LII------WDVHKGINLIRWRLCRKRVLVVLDDVD------QLEQLQALAGNHDWFGFGSRI  162 (216)
Q Consensus       111 -------------~---~~~------~~~~~~~~~l~~~l~~~~~llvlDd~~------~~~~~~~l~~~~~~~~~~~~i  162 (216)
                                   .   ...      +........+...+-++|-++|||+.-      +.+.+.+....+.  ..|.+|
T Consensus       106 e~~~~~~~wLer~~i~~~~~~kIk~LSKGnqQKIQfisaviHePeLlILDEPFSGLDPVN~elLk~~I~~lk--~~GatI  183 (300)
T COG4152         106 EIQKKLQAWLERLEIVGKKTKKIKELSKGNQQKIQFISAVIHEPELLILDEPFSGLDPVNVELLKDAIFELK--EEGATI  183 (300)
T ss_pred             HHHHHHHHHHHhccccccccchHHHhhhhhhHHHHHHHHHhcCCCEEEecCCccCCChhhHHHHHHHHHHHH--hcCCEE
Confidence                         0   000      001111113444555788899999663      4466666665555  578999


Q ss_pred             EEEeCCchhhhcc
Q 039455          163 IITTRDEHVLKGH  175 (216)
Q Consensus       163 l~tsr~~~~~~~~  175 (216)
                      |++||..+.+..+
T Consensus       184 ifSsH~Me~vEeL  196 (300)
T COG4152         184 IFSSHRMEHVEEL  196 (300)
T ss_pred             EEecchHHHHHHH
Confidence            9999987554443

>KOG2228 consensus Origin recognition complex, subunit 4 [Replication, recombination and repair]

Probab=98.49  E-value=5.6e-06  Score=65.50  Aligned_cols=174  Identities=18%  Similarity=0.133  Sum_probs=96.6

Q ss_pred             ccccccchhHHHHHHHHHhcC--CCCeeEEEEEecCCCcHHHHHHHHHHHhcCCCCceEeeccccccc--cccCchHHHH
Q 039455           25 VDGLVGIASRMEKMNGYLEAG--LDDVRFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLANVREVS--VTRGLVPLQE  100 (216)
Q Consensus        25 ~~~~vgR~~~~~~l~~~l~~~--~~~~~~i~I~G~~GiGKTtL~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~  100 (216)
                      --.|+|-.++.+.+..++..+  ......+.++||.|+|||+|......+.++.-+....+. ....-  ....+..+..
T Consensus        23 ~~~l~g~~~~~~~l~~~lkqt~~~gEsnsviiigprgsgkT~li~~~Ls~~q~~~E~~l~v~-Lng~~~~dk~al~~I~r  101 (408)
T KOG2228|consen   23 HINLFGVQDEQKHLSELLKQTILHGESNSVIIIGPRGSGKTILIDTRLSDIQENGENFLLVR-LNGELQTDKIALKGITR  101 (408)
T ss_pred             CcceeehHHHHHHHHHHHHHHHHhcCCCceEEEccCCCCceEeeHHHHhhHHhcCCeEEEEE-ECccchhhHHHHHHHHH
Confidence            345899999999999988754  344578899999999999999998877433333333332 11100  0112223333


Q ss_pred             HHHHHHHhhccccccchhhhHHHHHHHhC------CceEEEEEeCCCCHH------HHHHhhcCCC-CCCCCcEEEEEeC
Q 039455          101 QLLSEVLMERNLIIWDVHKGINLIRWRLC------RKRVLVVLDDVDQLE------QLQALAGNHD-WFGFGSRIIITTR  167 (216)
Q Consensus       101 ~l~~~~~~~~~~~~~~~~~~~~~l~~~l~------~~~~llvlDd~~~~~------~~~~l~~~~~-~~~~~~~il~tsr  167 (216)
                      ++..++.... ....+.......+...+.      +.++++|+|++|..-      -+-.++..-. ...+=|-|-+|||
T Consensus       102 ql~~e~~~~~-k~~gsfte~l~~lL~~L~~~~~~t~~~ViFIldEfDlf~~h~rQtllYnlfDisqs~r~Piciig~Ttr  180 (408)
T KOG2228|consen  102 QLALELNRIV-KSFGSFTENLSKLLEALKKGDETTSGKVIFILDEFDLFAPHSRQTLLYNLFDISQSARAPICIIGVTTR  180 (408)
T ss_pred             HHHHHHhhhh-eeecccchhHHHHHHHHhcCCCCCCceEEEEeehhhccccchhhHHHHHHHHHHhhcCCCeEEEEeecc
Confidence            3333322221 112233333444444443      236888999886331      1222222111 1124456678998


Q ss_pred             Cch-------hhhccCCcceEEecCCChHHHHHHHhhhhc
Q 039455          168 DEH-------VLKGHGVTNIYKVRGLDYVEALQLFHLKVS  200 (216)
Q Consensus       168 ~~~-------~~~~~~~~~~~~l~~l~~~~~~~ll~~~~~  200 (216)
                      -.-       +-+++.....+-+++++-++...++++-..
T Consensus       181 ld~lE~LEKRVKSRFshr~I~m~~~~~l~~yv~l~r~ll~  220 (408)
T KOG2228|consen  181 LDILELLEKRVKSRFSHRVIFMLPSLPLGDYVDLYRKLLS  220 (408)
T ss_pred             ccHHHHHHHHHHhhcccceeeccCCCChHHHHHHHHHHhc
Confidence            642       233333334566777888899999987663

>PRK10619 histidine/lysine/arginine/ornithine transporter subunit; Provisional

Probab=98.49  E-value=1e-06  Score=68.77  Aligned_cols=61  Identities=8%  Similarity=0.121  Sum_probs=39.6

Q ss_pred             hHHHHHHHhCCceEEEEEeCCC------CHHHHHHhhcCCCCCCCCcEEEEEeCCchhhhccCCcceEEe
Q 039455          120 GINLIRWRLCRKRVLVVLDDVD------QLEQLQALAGNHDWFGFGSRIIITTRDEHVLKGHGVTNIYKV  183 (216)
Q Consensus       120 ~~~~l~~~l~~~~~llvlDd~~------~~~~~~~l~~~~~~~~~~~~il~tsr~~~~~~~~~~~~~~~l  183 (216)
                      ....+.+.+..++-++++|+..      ....+..++..+.  ..+..||++||+.+....+ +++.+.+
T Consensus       159 qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~--~~g~tiiivsH~~~~~~~~-~d~i~~l  225 (257)
T PRK10619        159 QRVSIARALAMEPEVLLFDEPTSALDPELVGEVLRIMQQLA--EEGKTMVVVTHEMGFARHV-SSHVIFL  225 (257)
T ss_pred             HHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHH--hcCCEEEEEeCCHHHHHHh-cCEEEEE
Confidence            3445777888888999999773      2233444444333  3478899999998876654 3444444

>PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed

Probab=98.48  E-value=1.2e-06  Score=67.68  Aligned_cols=60  Identities=13%  Similarity=0.136  Sum_probs=38.2

Q ss_pred             HHHHHHHhCCceEEEEEeCCC------CHHHHHHhhcCCCCCCCCcEEEEEeCCchhhhccCCcceEEe
Q 039455          121 INLIRWRLCRKRVLVVLDDVD------QLEQLQALAGNHDWFGFGSRIIITTRDEHVLKGHGVTNIYKV  183 (216)
Q Consensus       121 ~~~l~~~l~~~~~llvlDd~~------~~~~~~~l~~~~~~~~~~~~il~tsr~~~~~~~~~~~~~~~l  183 (216)
                      .-.+...+..++-++++|+..      ....+..++..+.  ..+..||++||+.+....+ ++..+.+
T Consensus       144 rv~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~--~~~~tiii~sH~~~~~~~~-~d~i~~l  209 (240)
T PRK09493        144 RVAIARALAVKPKLMLFDEPTSALDPELRHEVLKVMQDLA--EEGMTMVIVTHEIGFAEKV-ASRLIFI  209 (240)
T ss_pred             HHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHH--HcCCEEEEEeCCHHHHHHh-CCEEEEE
Confidence            345677777888899999773      2234444444432  2367899999998876554 3444444

>PRK14259 phosphate ABC transporter ATP-binding protein; Provisional

Probab=98.48  E-value=1.9e-06  Score=67.68  Aligned_cols=60  Identities=8%  Similarity=-0.011  Sum_probs=39.8

Q ss_pred             HHHHHHHhCCceEEEEEeCCCC------HHHHHHhhcCCCCCCCCcEEEEEeCCchhhhccCCcceEEec
Q 039455          121 INLIRWRLCRKRVLVVLDDVDQ------LEQLQALAGNHDWFGFGSRIIITTRDEHVLKGHGVTNIYKVR  184 (216)
Q Consensus       121 ~~~l~~~l~~~~~llvlDd~~~------~~~~~~l~~~~~~~~~~~~il~tsr~~~~~~~~~~~~~~~l~  184 (216)
                      .-.+...+..++-++++|+.-+      ...+..++..+.   .+..||++||+.+....+ ++..+.+.
T Consensus       162 rl~laral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~---~~~tiiivtH~~~~~~~~-~d~i~~l~  227 (269)
T PRK14259        162 RLCIARTIAIEPEVILMDEPCSALDPISTLKIEETMHELK---KNFTIVIVTHNMQQAVRV-SDMTAFFN  227 (269)
T ss_pred             HHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHh---cCCEEEEEeCCHHHHHHh-cCEEEEEe
Confidence            3456777778889999998732      233444444432   246799999998776665 45666655

>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA

Probab=98.48  E-value=5.9e-06  Score=73.66  Aligned_cols=50  Identities=24%  Similarity=0.300  Sum_probs=38.4

Q ss_pred             ccccccchhHHHHHHHHHhcC-------CCCeeEEEEEecCCCcHHHHHHHHHHHhc
Q 039455           25 VDGLVGIASRMEKMNGYLEAG-------LDDVRFIGICGMGGIGKTTLAKVLYNTLK   74 (216)
Q Consensus        25 ~~~~vgR~~~~~~l~~~l~~~-------~~~~~~i~I~G~~GiGKTtL~~~~~~~~~   74 (216)
                      ....+|.+..++.+...+...       ..-..++.++||+|+|||.||+.++..+.
T Consensus       453 ~~~v~GQ~~ai~~l~~~i~~~~~g~~~~~~p~~~~lf~Gp~GvGKT~lA~~la~~l~  509 (731)
T TIGR02639       453 KAKIFGQDEAIDSLVSSIKRSRAGLGNPNKPVGSFLFTGPTGVGKTELAKQLAEALG  509 (731)
T ss_pred             hcceeCcHHHHHHHHHHHHHHhcCCCCCCCCceeEEEECCCCccHHHHHHHHHHHhc
Confidence            346789999999888776521       11234689999999999999999998763

>PRK10865 protein disaggregation chaperone; Provisional

Probab=98.48  E-value=6.2e-06  Score=74.52  Aligned_cols=49  Identities=22%  Similarity=0.313  Sum_probs=38.0

Q ss_pred             cccccchhHHHHHHHHHhcC-----C-CC-eeEEEEEecCCCcHHHHHHHHHHHhc
Q 039455           26 DGLVGIASRMEKMNGYLEAG-----L-DD-VRFIGICGMGGIGKTTLAKVLYNTLK   74 (216)
Q Consensus        26 ~~~vgR~~~~~~l~~~l~~~-----~-~~-~~~i~I~G~~GiGKTtL~~~~~~~~~   74 (216)
                      ..++|.+..++.+...+...     . +. ..++.++||+|+|||+||+.++..+.
T Consensus       568 ~~viGQ~~ai~~l~~~i~~~~~gl~~~~~p~~~~Lf~Gp~G~GKT~lA~aLa~~l~  623 (857)
T PRK10865        568 HRVIGQNEAVEAVSNAIRRSRAGLSDPNRPIGSFLFLGPTGVGKTELCKALANFMF  623 (857)
T ss_pred             CeEeCCHHHHHHHHHHHHHHHhcccCCCCCCceEEEECCCCCCHHHHHHHHHHHhh
Confidence            45889999999888876521     1 11 24789999999999999999998664

>PRK11144 modC molybdate transporter ATP-binding protein; Provisional

Probab=98.48  E-value=7.6e-07  Score=72.62  Aligned_cols=57  Identities=12%  Similarity=0.036  Sum_probs=36.1

Q ss_pred             hhhHHHHHHHhCCceEEEEEeCCCC------HHHHHHhhcCCCCCCCCcEEEEEeCCchhhhcc
Q 039455          118 HKGINLIRWRLCRKRVLVVLDDVDQ------LEQLQALAGNHDWFGFGSRIIITTRDEHVLKGH  175 (216)
Q Consensus       118 ~~~~~~l~~~l~~~~~llvlDd~~~------~~~~~~l~~~~~~~~~~~~il~tsr~~~~~~~~  175 (216)
                      +...-.+.+.+..++-++++|+.-+      ...+..++..+.. ..+..+|++||+.+.+..+
T Consensus       133 q~qRvalaraL~~~p~llLLDEPts~LD~~~~~~l~~~L~~l~~-~~g~tii~vTHd~~~~~~~  195 (352)
T PRK11144        133 EKQRVAIGRALLTAPELLLMDEPLASLDLPRKRELLPYLERLAR-EINIPILYVSHSLDEILRL  195 (352)
T ss_pred             HHHHHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHH-hcCCeEEEEecCHHHHHHh
Confidence            3444567888888999999998732      2333333333221 1357899999998765443

>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]

Probab=98.47  E-value=1.5e-06  Score=74.20  Aligned_cols=153  Identities=22%  Similarity=0.234  Sum_probs=89.2

Q ss_pred             cccccchhHHHHHHHHHhc-----------CCCCeeEEEEEecCCCcHHHHHHHHHHHhcCCCCceEeeccccccccccC
Q 039455           26 DGLVGIASRMEKMNGYLEA-----------GLDDVRFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLANVREVSVTRG   94 (216)
Q Consensus        26 ~~~vgR~~~~~~l~~~l~~-----------~~~~~~~i~I~G~~GiGKTtL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   94 (216)
                      ....|-+...+.+...+..           .-.....+.++||+|+|||.||+.++.....+|-.+..-.          
T Consensus       242 ~diggl~~~k~~l~e~v~~~~~~~e~~~~~~~~~~~giLl~GpPGtGKT~lAkava~~~~~~fi~v~~~~----------  311 (494)
T COG0464         242 DDIGGLEEAKEELKEAIETPLKRPELFRKLGLRPPKGVLLYGPPGTGKTLLAKAVALESRSRFISVKGSE----------  311 (494)
T ss_pred             ehhhcHHHHHHHHHHHHHhHhhChHHHHhcCCCCCCeeEEECCCCCCHHHHHHHHHhhCCCeEEEeeCHH----------
Confidence            3445555555555554331           1234568999999999999999999986554432222211          


Q ss_pred             chHHHHHHHHHHHhhccccccchhhhHHHHHHHhCCceEEEEEeCCCCH-------------HHHHHhhcCCCCC--CCC
Q 039455           95 LVPLQEQLLSEVLMERNLIIWDVHKGINLIRWRLCRKRVLVVLDDVDQL-------------EQLQALAGNHDWF--GFG  159 (216)
Q Consensus        95 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~llvlDd~~~~-------------~~~~~l~~~~~~~--~~~  159 (216)
                             ++....      ..+.......+..+....+++|++|++++.             ..+..++..+...  ..+
T Consensus       312 -------l~sk~v------Gesek~ir~~F~~A~~~~p~iiFiDEiDs~~~~r~~~~~~~~~r~~~~lL~~~d~~e~~~~  378 (494)
T COG0464         312 -------LLSKWV------GESEKNIRELFEKARKLAPSIIFIDEIDSLASGRGPSEDGSGRRVVGQLLTELDGIEKAEG  378 (494)
T ss_pred             -------Hhcccc------chHHHHHHHHHHHHHcCCCcEEEEEchhhhhccCCCCCchHHHHHHHHHHHHhcCCCccCc
Confidence                   111000      001112233344455678999999998643             2234444443211  233


Q ss_pred             cEEEEEeCCchhhhc---c--CCcceEEecCCChHHHHHHHhhhhcC
Q 039455          160 SRIIITTRDEHVLKG---H--GVTNIYKVRGLDYVEALQLFHLKVSK  201 (216)
Q Consensus       160 ~~il~tsr~~~~~~~---~--~~~~~~~l~~l~~~~~~~ll~~~~~~  201 (216)
                      ..+|-+|..+.....   .  .-+..+.+++-+.++..+.|..+...
T Consensus       379 v~vi~aTN~p~~ld~a~lR~gRfd~~i~v~~pd~~~r~~i~~~~~~~  425 (494)
T COG0464         379 VLVIAATNRPDDLDPALLRPGRFDRLIYVPLPDLEERLEIFKIHLRD  425 (494)
T ss_pred             eEEEecCCCccccCHhhcccCccceEeecCCCCHHHHHHHHHHHhcc
Confidence            445556655544332   1  34678999999999999999988753

>PRK15177 Vi polysaccharide export ATP-binding protein VexC; Provisional

Probab=98.47  E-value=1.3e-06  Score=66.25  Aligned_cols=28  Identities=36%  Similarity=0.404  Sum_probs=24.3

Q ss_pred             CCeeEEEEEecCCCcHHHHHHHHHHHhc
Q 039455           47 DDVRFIGICGMGGIGKTTLAKVLYNTLK   74 (216)
Q Consensus        47 ~~~~~i~I~G~~GiGKTtL~~~~~~~~~   74 (216)
                      +.+.+++|.|++|+|||||++.+++...
T Consensus        11 ~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~   38 (213)
T PRK15177         11 GYHEHIGILAAPGSGKTTLTRLLCGLDA   38 (213)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhCCcc
Confidence            3468999999999999999999998554

>PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional

Probab=98.47  E-value=1.3e-06  Score=67.04  Aligned_cols=62  Identities=10%  Similarity=0.040  Sum_probs=37.8

Q ss_pred             hHHHHHHHhCCceEEEEEeCCCC------HHHHHHhhcCCCCCCCCcEEEEEeCCchhhhccCCcceEEe
Q 039455          120 GINLIRWRLCRKRVLVVLDDVDQ------LEQLQALAGNHDWFGFGSRIIITTRDEHVLKGHGVTNIYKV  183 (216)
Q Consensus       120 ~~~~l~~~l~~~~~llvlDd~~~------~~~~~~l~~~~~~~~~~~~il~tsr~~~~~~~~~~~~~~~l  183 (216)
                      ..-.+...+..++-++++|+...      ...+..++..+.. ..+..+|++||+.+....+ +++.+.+
T Consensus       136 qrv~laral~~~p~lllLDEP~~gLD~~~~~~~~~~l~~~~~-~~~~tiii~sH~~~~~~~~-~d~i~~l  203 (232)
T PRK10771        136 QRVALARCLVREQPILLLDEPFSALDPALRQEMLTLVSQVCQ-ERQLTLLMVSHSLEDAARI-APRSLVV  203 (232)
T ss_pred             HHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHH-hcCCEEEEEECCHHHHHHh-CCEEEEE
Confidence            34456777788889999998732      2333333333210 2367899999999876554 3344444

>cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine

Probab=98.47  E-value=1e-06  Score=67.89  Aligned_cols=60  Identities=18%  Similarity=0.210  Sum_probs=38.3

Q ss_pred             HHHHHHHhCCceEEEEEeCCCC------HHHHHHhhcCCCCCCCCcEEEEEeCCchhhhccCCcceEEe
Q 039455          121 INLIRWRLCRKRVLVVLDDVDQ------LEQLQALAGNHDWFGFGSRIIITTRDEHVLKGHGVTNIYKV  183 (216)
Q Consensus       121 ~~~l~~~l~~~~~llvlDd~~~------~~~~~~l~~~~~~~~~~~~il~tsr~~~~~~~~~~~~~~~l  183 (216)
                      ...+...+..++-++++|+..+      ...+..++..+.  ..+..||++||+.+....+ ++..+.+
T Consensus       151 rv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~--~~~~tii~vsH~~~~~~~~-~d~i~~l  216 (236)
T cd03219         151 RLEIARALATDPKLLLLDEPAAGLNPEETEELAELIRELR--ERGITVLLVEHDMDVVMSL-ADRVTVL  216 (236)
T ss_pred             HHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHH--HCCCEEEEEecCHHHHHHh-CCEEEEE
Confidence            3356777778889999998732      233334443332  2467899999998876654 4444444

MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).

>PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional

Probab=98.47  E-value=1.2e-06  Score=67.19  Aligned_cols=62  Identities=10%  Similarity=0.116  Sum_probs=39.1

Q ss_pred             hHHHHHHHhCCceEEEEEeCCC------CHHHHHHhhcCCCCCCCCcEEEEEeCCchhhhccCCcceEEec
Q 039455          120 GINLIRWRLCRKRVLVVLDDVD------QLEQLQALAGNHDWFGFGSRIIITTRDEHVLKGHGVTNIYKVR  184 (216)
Q Consensus       120 ~~~~l~~~l~~~~~llvlDd~~------~~~~~~~l~~~~~~~~~~~~il~tsr~~~~~~~~~~~~~~~l~  184 (216)
                      ..-.+...+..++-++++|+.-      +.+.+..++..+.. ..+..||++||+.+....  +++.+.+.
T Consensus       153 qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~~~tii~~sH~~~~~~~--~d~i~~l~  220 (228)
T PRK10584        153 QRVALARAFNGRPDVLFADEPTGNLDRQTGDKIADLLFSLNR-EHGTTLILVTHDLQLAAR--CDRRLRLV  220 (228)
T ss_pred             HHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHH-hcCCEEEEEecCHHHHHh--CCEEEEEE
Confidence            3445777778888999999873      22334444433321 236789999999887643  55655554

>PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional

Probab=98.47  E-value=1.2e-06  Score=68.26  Aligned_cols=62  Identities=16%  Similarity=0.237  Sum_probs=38.8

Q ss_pred             hHHHHHHHhCCceEEEEEeCCC------CHHHHHHhhcCCCCCCCCcEEEEEeCCchhhhccCCcceEEe
Q 039455          120 GINLIRWRLCRKRVLVVLDDVD------QLEQLQALAGNHDWFGFGSRIIITTRDEHVLKGHGVTNIYKV  183 (216)
Q Consensus       120 ~~~~l~~~l~~~~~llvlDd~~------~~~~~~~l~~~~~~~~~~~~il~tsr~~~~~~~~~~~~~~~l  183 (216)
                      ..-.+...+..++-++++|+.-      +...+..++..+.. ..+..||++||+.+....+ +++.+.+
T Consensus       160 qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~-~~~~tii~~sH~~~~~~~~-~d~i~~l  227 (255)
T PRK11300        160 RRLEIARCMVTQPEILMLDEPAAGLNPKETKELDELIAELRN-EHNVTVLLIEHDMKLVMGI-SDRIYVV  227 (255)
T ss_pred             HHHHHHHHHhcCCCEEEEcCCccCCCHHHHHHHHHHHHHHHh-hcCCEEEEEeCCHHHHHHh-CCEEEEE
Confidence            3445777888889999999873      22334444433321 1367899999998776554 3444443

>COG1118 CysA ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism]

Probab=98.47  E-value=1.6e-06  Score=67.68  Aligned_cols=63  Identities=11%  Similarity=0.059  Sum_probs=40.4

Q ss_pred             ccccchhhhHHHHHHHhCCceEEEEEeCCCCH------HHHHHhhcCCCCCCCCcEEEEEeCCchhhhcc
Q 039455          112 LIIWDVHKGINLIRWRLCRKRVLVVLDDVDQL------EQLQALAGNHDWFGFGSRIIITTRDEHVLKGH  175 (216)
Q Consensus       112 ~~~~~~~~~~~~l~~~l~~~~~llvlDd~~~~------~~~~~l~~~~~~~~~~~~il~tsr~~~~~~~~  175 (216)
                      .+.+..+....++.+.+.-.|-+|.||+.-..      .+++..+..+.. ..+...+++||+.+.+..+
T Consensus       136 ~QLSGGQrQRVALARALA~eP~vLLLDEPf~ALDa~vr~~lr~wLr~~~~-~~~~ttvfVTHD~eea~~l  204 (345)
T COG1118         136 AQLSGGQRQRVALARALAVEPKVLLLDEPFGALDAKVRKELRRWLRKLHD-RLGVTTVFVTHDQEEALEL  204 (345)
T ss_pred             hhcChHHHHHHHHHHHhhcCCCeEeecCCchhhhHHHHHHHHHHHHHHHH-hhCceEEEEeCCHHHHHhh
Confidence            34455566677899999999999999987322      223222222110 2367899999998765554

>PRK11147 ABC transporter ATPase component; Reviewed

Probab=98.47  E-value=1.1e-06  Score=77.02  Aligned_cols=58  Identities=17%  Similarity=0.290  Sum_probs=38.9

Q ss_pred             hHHHHHHHhCCceEEEEEeCCC------CHHHHHHhhcCCCCCCCCcEEEEEeCCchhhhccCCcceEEe
Q 039455          120 GINLIRWRLCRKRVLVVLDDVD------QLEQLQALAGNHDWFGFGSRIIITTRDEHVLKGHGVTNIYKV  183 (216)
Q Consensus       120 ~~~~l~~~l~~~~~llvlDd~~------~~~~~~~l~~~~~~~~~~~~il~tsr~~~~~~~~~~~~~~~l  183 (216)
                      ....+...+..++-+|++|+.-      +...+..++..+.     ..||++||+..++..+ ++..+.+
T Consensus       163 qRv~LAraL~~~P~lLLLDEPt~~LD~~~~~~L~~~L~~~~-----~tvlivsHd~~~l~~~-~d~i~~L  226 (635)
T PRK11147        163 RKAALGRALVSNPDVLLLDEPTNHLDIETIEWLEGFLKTFQ-----GSIIFISHDRSFIRNM-ATRIVDL  226 (635)
T ss_pred             HHHHHHHHHhcCCCEEEEcCCCCccCHHHHHHHHHHHHhCC-----CEEEEEeCCHHHHHHh-cCeEEEE
Confidence            3446778888889999999773      2344555555442     4799999999887665 3344333

>TIGR02314 ABC_MetN D-methionine ABC transporter, ATP-binding protein

Probab=98.47  E-value=9.5e-07  Score=71.61  Aligned_cols=57  Identities=18%  Similarity=0.232  Sum_probs=37.7

Q ss_pred             hhhHHHHHHHhCCceEEEEEeCCCC------HHHHHHhhcCCCCCCCCcEEEEEeCCchhhhcc
Q 039455          118 HKGINLIRWRLCRKRVLVVLDDVDQ------LEQLQALAGNHDWFGFGSRIIITTRDEHVLKGH  175 (216)
Q Consensus       118 ~~~~~~l~~~l~~~~~llvlDd~~~------~~~~~~l~~~~~~~~~~~~il~tsr~~~~~~~~  175 (216)
                      +.....+.+.+..++-++++|+.-+      ...+..++..+.. ..+.+||++||+.+.+..+
T Consensus       145 qkQRV~IARAL~~~P~iLLlDEPts~LD~~t~~~i~~lL~~l~~-~~g~tiiliTH~~~~v~~~  207 (343)
T TIGR02314       145 QKQRVAIARALASNPKVLLCDEATSALDPATTQSILELLKEINR-RLGLTILLITHEMDVVKRI  207 (343)
T ss_pred             HHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHHH-hcCCEEEEEeCCHHHHHHh
Confidence            3445568888889999999998732      2333344433321 2367899999998876554

Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria.

>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB

Probab=98.47  E-value=6.4e-06  Score=74.56  Aligned_cols=51  Identities=27%  Similarity=0.322  Sum_probs=40.0

Q ss_pred             ccccccchhHHHHHHHHHhcC-------CCCeeEEEEEecCCCcHHHHHHHHHHHhcC
Q 039455           25 VDGLVGIASRMEKMNGYLEAG-------LDDVRFIGICGMGGIGKTTLAKVLYNTLKD   75 (216)
Q Consensus        25 ~~~~vgR~~~~~~l~~~l~~~-------~~~~~~i~I~G~~GiGKTtL~~~~~~~~~~   75 (216)
                      ...++|.+..++.+...+...       ......+.++||+|+|||++|+.++..+..
T Consensus       564 ~~~v~GQ~~av~~v~~~i~~~~~gl~~~~~p~~~~Lf~Gp~GvGKt~lA~~La~~l~~  621 (852)
T TIGR03346       564 HERVVGQDEAVEAVSDAIRRSRAGLSDPNRPIGSFLFLGPTGVGKTELAKALAEFLFD  621 (852)
T ss_pred             hcccCCChHHHHHHHHHHHHHhccCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHhcC
Confidence            356899999999998877531       112357889999999999999999987643

Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.

>TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein

Probab=98.46  E-value=1.6e-06  Score=67.27  Aligned_cols=28  Identities=25%  Similarity=0.347  Sum_probs=24.7

Q ss_pred             CCeeEEEEEecCCCcHHHHHHHHHHHhc
Q 039455           47 DDVRFIGICGMGGIGKTTLAKVLYNTLK   74 (216)
Q Consensus        47 ~~~~~i~I~G~~GiGKTtL~~~~~~~~~   74 (216)
                      ..+.+++|.|++|+|||||++.+++...
T Consensus        25 ~~Ge~~~i~G~nGsGKSTLl~~l~G~~~   52 (247)
T TIGR00972        25 PKNQVTALIGPSGCGKSTLLRSLNRMND   52 (247)
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhccCC
Confidence            4568999999999999999999998654

This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters.

>PF14532 Sigma54_activ_2: Sigma-54 interaction domain; PDB: 3CO5_B 3N70_H

Probab=98.46  E-value=9.3e-07  Score=62.35  Aligned_cols=46  Identities=28%  Similarity=0.302  Sum_probs=34.2

Q ss_pred             ccchhHHHHHHHHHhcCCCCeeEEEEEecCCCcHHHHHHHHHHHhc
Q 039455           29 VGIASRMEKMNGYLEAGLDDVRFIGICGMGGIGKTTLAKVLYNTLK   74 (216)
Q Consensus        29 vgR~~~~~~l~~~l~~~~~~~~~i~I~G~~GiGKTtL~~~~~~~~~   74 (216)
                      ||+...++++.+-+..-......|.|+|++|+||+++|+.+.....
T Consensus         1 vG~S~~~~~l~~~l~~~a~~~~pvli~GE~GtGK~~~A~~lh~~~~   46 (138)
T PF14532_consen    1 VGKSPAMRRLRRQLERLAKSSSPVLITGEPGTGKSLLARALHRYSG   46 (138)
T ss_dssp             --SCHHHHHHHHHHHHHHCSSS-EEEECCTTSSHHHHHHCCHHTTT
T ss_pred             CCCCHHHHHHHHHHHHHhCCCCcEEEEcCCCCCHHHHHHHHHhhcC
Confidence            5788888888887664334457889999999999999998877543

>PRK13540 cytochrome c biogenesis protein CcmA; Provisional

Probab=98.46  E-value=9.3e-07  Score=66.37  Aligned_cols=55  Identities=18%  Similarity=0.155  Sum_probs=36.6

Q ss_pred             hhHHHHHHHhCCceEEEEEeCCCC------HHHHHHhhcCCCCCCCCcEEEEEeCCchhhhcc
Q 039455          119 KGINLIRWRLCRKRVLVVLDDVDQ------LEQLQALAGNHDWFGFGSRIIITTRDEHVLKGH  175 (216)
Q Consensus       119 ~~~~~l~~~l~~~~~llvlDd~~~------~~~~~~l~~~~~~~~~~~~il~tsr~~~~~~~~  175 (216)
                      ...-.+...+..++-++++|+...      .+.+..++..+.  ..+..||++||+....+..
T Consensus       133 ~~rv~laral~~~p~~lilDEP~~~LD~~~~~~l~~~l~~~~--~~~~tiii~sh~~~~~~~~  193 (200)
T PRK13540        133 KRQVALLRLWMSKAKLWLLDEPLVALDELSLLTIITKIQEHR--AKGGAVLLTSHQDLPLNKA  193 (200)
T ss_pred             HHHHHHHHHHhcCCCEEEEeCCCcccCHHHHHHHHHHHHHHH--HcCCEEEEEeCCchhcccc
Confidence            334457778888899999998732      233444443332  2467899999998777664

>PRK13651 cobalt transporter ATP-binding subunit; Provisional

Probab=98.46  E-value=9e-07  Score=70.76  Aligned_cols=53  Identities=17%  Similarity=0.191  Sum_probs=35.3

Q ss_pred             hHHHHHHHhCCceEEEEEeCCCC------HHHHHHhhcCCCCCCCCcEEEEEeCCchhhhc
Q 039455          120 GINLIRWRLCRKRVLVVLDDVDQ------LEQLQALAGNHDWFGFGSRIIITTRDEHVLKG  174 (216)
Q Consensus       120 ~~~~l~~~l~~~~~llvlDd~~~------~~~~~~l~~~~~~~~~~~~il~tsr~~~~~~~  174 (216)
                      ....+...+..++-+|++|+.-.      ...+..++..+.  ..+..||++||+.+.+..
T Consensus       172 qrvalA~aL~~~P~lLlLDEPt~~LD~~~~~~l~~~l~~l~--~~g~tiiivtHd~~~~~~  230 (305)
T PRK13651        172 RRVALAGILAMEPDFLVFDEPTAGLDPQGVKEILEIFDNLN--KQGKTIILVTHDLDNVLE  230 (305)
T ss_pred             HHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHH--HCCCEEEEEeeCHHHHHH
Confidence            34457888888999999998732      233344443332  247889999999876544

>TIGR01166 cbiO cobalt transport protein ATP-binding subunit

Probab=98.46  E-value=4.3e-07  Score=67.60  Aligned_cols=28  Identities=29%  Similarity=0.444  Sum_probs=24.2

Q ss_pred             CCeeEEEEEecCCCcHHHHHHHHHHHhc
Q 039455           47 DDVRFIGICGMGGIGKTTLAKVLYNTLK   74 (216)
Q Consensus        47 ~~~~~i~I~G~~GiGKTtL~~~~~~~~~   74 (216)
                      ..+.+++|.|++|+|||||++.+++...
T Consensus        16 ~~Ge~~~i~G~nGsGKSTLl~~i~G~~~   43 (190)
T TIGR01166        16 ERGEVLALLGANGAGKSTLLLHLNGLLR   43 (190)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence            4568999999999999999999998543

This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.

>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein

Probab=98.46  E-value=1.6e-06  Score=66.05  Aligned_cols=62  Identities=15%  Similarity=0.196  Sum_probs=38.6

Q ss_pred             hHHHHHHHhCCceEEEEEeCCCC------HHHHHHhhcCCCCCCCCcEEEEEeCCchhhhccCCcceEEec
Q 039455          120 GINLIRWRLCRKRVLVVLDDVDQ------LEQLQALAGNHDWFGFGSRIIITTRDEHVLKGHGVTNIYKVR  184 (216)
Q Consensus       120 ~~~~l~~~l~~~~~llvlDd~~~------~~~~~~l~~~~~~~~~~~~il~tsr~~~~~~~~~~~~~~~l~  184 (216)
                      ..-.+...+..++-++++|+.-+      ...+..++..+.. ..+..||++||+.+....  ++..+.+.
T Consensus       148 qrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~-~~~~tii~~tH~~~~~~~--~d~v~~l~  215 (221)
T TIGR02211       148 QRVAIARALVNQPSLVLADEPTGNLDNNNAKIIFDLMLELNR-ELNTSFLVVTHDLELAKK--LDRVLEMK  215 (221)
T ss_pred             HHHHHHHHHhCCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHH-hcCCEEEEEeCCHHHHhh--cCEEEEEe
Confidence            34457777788888999998732      2334344433220 235789999999877654  35555553

This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina.

>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A

Probab=98.46  E-value=5.3e-06  Score=60.13  Aligned_cols=133  Identities=19%  Similarity=0.188  Sum_probs=70.4

Q ss_pred             cchhHHHHHHHHHhcCCCCeeEEEEEecCCCcHHHHHHHHHHHhcCC--------------------CCceEeecccccc
Q 039455           30 GIASRMEKMNGYLEAGLDDVRFIGICGMGGIGKTTLAKVLYNTLKDQ--------------------FEASSFLANVREV   89 (216)
Q Consensus        30 gR~~~~~~l~~~l~~~~~~~~~i~I~G~~GiGKTtL~~~~~~~~~~~--------------------~~~~~~~~~~~~~   89 (216)
                      |.+...+.|...+..+ .-...+.++|+.|+||+++|..++..+-..                    .+...|+..... 
T Consensus         1 gq~~~~~~L~~~~~~~-~l~ha~L~~G~~g~gk~~~a~~~a~~ll~~~~~~~~c~~c~~c~~~~~~~~~d~~~~~~~~~-   78 (162)
T PF13177_consen    1 GQEEIIELLKNLIKSG-RLPHALLFHGPSGSGKKTLALAFARALLCSNPNEDPCGECRSCRRIEEGNHPDFIIIKPDKK-   78 (162)
T ss_dssp             S-HHHHHHHHHHHHCT-C--SEEEEECSTTSSHHHHHHHHHHHHC-TT-CTT--SSSHHHHHHHTT-CTTEEEEETTTS-
T ss_pred             CcHHHHHHHHHHHHcC-CcceeEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHhccCcceEEEecccc-
Confidence            5566677777777653 334678999999999999999999865322                    223333320000 


Q ss_pred             ccccCchHHHHHHHHHHHhhccccccchhhhHHHHHHHh-----CCceEEEEEeCCCCH--HHHHHhhcCCCCCCCCcEE
Q 039455           90 SVTRGLVPLQEQLLSEVLMERNLIIWDVHKGINLIRWRL-----CRKRVLVVLDDVDQL--EQLQALAGNHDWFGFGSRI  162 (216)
Q Consensus        90 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l-----~~~~~llvlDd~~~~--~~~~~l~~~~~~~~~~~~i  162 (216)
                        ..                    ....+... .+...+     .++.-++|||+++..  +....++..+..-..++.+
T Consensus        79 --~~--------------------~i~i~~ir-~i~~~~~~~~~~~~~KviiI~~ad~l~~~a~NaLLK~LEepp~~~~f  135 (162)
T PF13177_consen   79 --KK--------------------SIKIDQIR-EIIEFLSLSPSEGKYKVIIIDEADKLTEEAQNALLKTLEEPPENTYF  135 (162)
T ss_dssp             --SS--------------------SBSHHHHH-HHHHHCTSS-TTSSSEEEEEETGGGS-HHHHHHHHHHHHSTTTTEEE
T ss_pred             --cc--------------------hhhHHHHH-HHHHHHHHHHhcCCceEEEeehHhhhhHHHHHHHHHHhcCCCCCEEE
Confidence              00                    00111111 222222     234669999999854  4455555444333467778


Q ss_pred             EEEeCCch-hhhcc-CCcceEEecCCC
Q 039455          163 IITTRDEH-VLKGH-GVTNIYKVRGLD  187 (216)
Q Consensus       163 l~tsr~~~-~~~~~-~~~~~~~l~~l~  187 (216)
                      |++|++.. +...+ ..-..+.++|+|
T Consensus       136 iL~t~~~~~il~TI~SRc~~i~~~~ls  162 (162)
T PF13177_consen  136 ILITNNPSKILPTIRSRCQVIRFRPLS  162 (162)
T ss_dssp             EEEES-GGGS-HHHHTTSEEEEE----
T ss_pred             EEEECChHHChHHHHhhceEEecCCCC
Confidence            88887654 33332 234677777764

...

>PRK13545 tagH teichoic acids export protein ATP-binding subunit; Provisional

Probab=98.46  E-value=1.1e-06  Score=74.37  Aligned_cols=126  Identities=11%  Similarity=0.094  Sum_probs=67.4

Q ss_pred             CCeeEEEEEecCCCcHHHHHHHHHHHhcCCCCceEeecccc-------ccccccCchHH------------------HHH
Q 039455           47 DDVRFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLANVR-------EVSVTRGLVPL------------------QEQ  101 (216)
Q Consensus        47 ~~~~~i~I~G~~GiGKTtL~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~------------------~~~  101 (216)
                      ..+..++|.|++|+|||||++.+++..... .+.+++....       .........+.                  ...
T Consensus        48 ~~GEivgIiGpNGSGKSTLLkiLaGLl~P~-sGeI~I~G~~~~i~~~~~l~~~lTV~EnL~l~~~~~~~~~~e~~e~i~e  126 (549)
T PRK13545         48 PEGEIVGIIGLNGSGKSTLSNLIAGVTMPN-KGTVDIKGSAALIAISSGLNGQLTGIENIELKGLMMGLTKEKIKEIIPE  126 (549)
T ss_pred             eCCCEEEEEcCCCCCHHHHHHHHhCCCCCC-ceEEEECCEeeeEEeccccCCCCcHHHHHHhhhhhcCCCHHHHHHHHHH
Confidence            356899999999999999999999865432 2222221100       00000000000                  001


Q ss_pred             HHHHHHh-----hccccccchhhhHHHHHHHhCCceEEEEEeCCCC------HHHHHHhhcCCCCCCCCcEEEEEeCCch
Q 039455          102 LLSEVLM-----ERNLIIWDVHKGINLIRWRLCRKRVLVVLDDVDQ------LEQLQALAGNHDWFGFGSRIIITTRDEH  170 (216)
Q Consensus       102 l~~~~~~-----~~~~~~~~~~~~~~~l~~~l~~~~~llvlDd~~~------~~~~~~l~~~~~~~~~~~~il~tsr~~~  170 (216)
                      ++..+..     ......+..+...-.+...+...+-++++|+.-+      ...+..++..+.  ..+..||++||+..
T Consensus       127 lLe~lgL~~~ld~~~~~LSGGQrQRVaLArAL~~~P~LLLLDEPTsgLD~~sr~~LlelL~el~--~~G~TIIIVSHdl~  204 (549)
T PRK13545        127 IIEFADIGKFIYQPVKTYSSGMKSRLGFAISVHINPDILVIDEALSVGDQTFTKKCLDKMNEFK--EQGKTIFFISHSLS  204 (549)
T ss_pred             HHHHcCChhHhhCCcccCCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHH--hCCCEEEEEECCHH
Confidence            1111100     0001112223334457888888999999998742      123333333332  34678999999987


Q ss_pred             hhhcc
Q 039455          171 VLKGH  175 (216)
Q Consensus       171 ~~~~~  175 (216)
                      .+..+
T Consensus       205 ~i~~l  209 (549)
T PRK13545        205 QVKSF  209 (549)
T ss_pred             HHHHh
Confidence            66554

>PRK10636 putative ABC transporter ATP-binding protein; Provisional

Probab=98.46  E-value=1.5e-06  Score=76.21  Aligned_cols=58  Identities=17%  Similarity=0.171  Sum_probs=38.9

Q ss_pred             hHHHHHHHhCCceEEEEEeCCC------CHHHHHHhhcCCCCCCCCcEEEEEeCCchhhhccCCcceEEe
Q 039455          120 GINLIRWRLCRKRVLVVLDDVD------QLEQLQALAGNHDWFGFGSRIIITTRDEHVLKGHGVTNIYKV  183 (216)
Q Consensus       120 ~~~~l~~~l~~~~~llvlDd~~------~~~~~~~l~~~~~~~~~~~~il~tsr~~~~~~~~~~~~~~~l  183 (216)
                      ....+...+..++-+|+||+.-      +...+..++..+     +..||++||+.+++..+ ++..+.+
T Consensus       156 qRv~LA~aL~~~P~lLLLDEPtn~LD~~~~~~L~~~L~~~-----~~tviivsHd~~~l~~~-~d~i~~L  219 (638)
T PRK10636        156 MRLNLAQALICRSDLLLLDEPTNHLDLDAVIWLEKWLKSY-----QGTLILISHDRDFLDPI-VDKIIHI  219 (638)
T ss_pred             HHHHHHHHHccCCCEEEEcCCCCcCCHHHHHHHHHHHHhC-----CCeEEEEeCCHHHHHHh-cCEEEEE
Confidence            3445777888889999999773      334455555443     35799999999887765 3444444

>TIGR03258 PhnT 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT

Probab=98.46  E-value=1.1e-06  Score=71.85  Aligned_cols=58  Identities=10%  Similarity=-0.064  Sum_probs=37.0

Q ss_pred             hhhHHHHHHHhCCceEEEEEeCCCC------HHHHHHhhcCCCCCCCCcEEEEEeCCchhhhcc
Q 039455          118 HKGINLIRWRLCRKRVLVVLDDVDQ------LEQLQALAGNHDWFGFGSRIIITTRDEHVLKGH  175 (216)
Q Consensus       118 ~~~~~~l~~~l~~~~~llvlDd~~~------~~~~~~l~~~~~~~~~~~~il~tsr~~~~~~~~  175 (216)
                      +...-.+.+.+..++-++++|+.-+      ...+...+..+.....+..+|++||+.+.+..+
T Consensus       142 q~QRvaLARAL~~~P~llLLDEP~s~LD~~~r~~l~~~l~~l~~~~~g~til~vTHd~~ea~~l  205 (362)
T TIGR03258       142 MQQRIAIARAIAIEPDVLLLDEPLSALDANIRANMREEIAALHEELPELTILCVTHDQDDALTL  205 (362)
T ss_pred             HHHHHHHHHHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHHHhCCCCEEEEEeCCHHHHHHh
Confidence            3444568888889999999998732      233444443332111267899999998765443

This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate.

>cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria

Probab=98.46  E-value=1.8e-06  Score=66.41  Aligned_cols=61  Identities=15%  Similarity=0.205  Sum_probs=40.9

Q ss_pred             hhhHHHHHHHhCCceEEEEEeCCC------CHHHHHHhhcCCCCCCCCcEEEEEeCCchhhhccCCcceEEe
Q 039455          118 HKGINLIRWRLCRKRVLVVLDDVD------QLEQLQALAGNHDWFGFGSRIIITTRDEHVLKGHGVTNIYKV  183 (216)
Q Consensus       118 ~~~~~~l~~~l~~~~~llvlDd~~------~~~~~~~l~~~~~~~~~~~~il~tsr~~~~~~~~~~~~~~~l  183 (216)
                      +...-.+...+..++-++++|+..      ..+.+..++..+.  . +..||++||+.+....  +++.+.+
T Consensus       142 ~~~rl~la~aL~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~--~-~~tiii~sh~~~~~~~--~d~~~~l  208 (236)
T cd03253         142 EKQRVAIARAILKNPPILLLDEATSALDTHTEREIQAALRDVS--K-GRTTIVIAHRLSTIVN--ADKIIVL  208 (236)
T ss_pred             HHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHhc--C-CCEEEEEcCCHHHHHh--CCEEEEE
Confidence            334446788888999999999873      2234445554443  3 6789999999887754  5555555

Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK15064 ABC transporter ATP-binding protein; Provisional

Probab=98.45  E-value=2e-06  Score=74.05  Aligned_cols=53  Identities=23%  Similarity=0.293  Sum_probs=35.9

Q ss_pred             hhhHHHHHHHhCCceEEEEEeCCCC------HHHHHHhhcCCCCCCCCcEEEEEeCCchhhhcc
Q 039455          118 HKGINLIRWRLCRKRVLVVLDDVDQ------LEQLQALAGNHDWFGFGSRIIITTRDEHVLKGH  175 (216)
Q Consensus       118 ~~~~~~l~~~l~~~~~llvlDd~~~------~~~~~~l~~~~~~~~~~~~il~tsr~~~~~~~~  175 (216)
                      +.....+...+..++-++++|+..+      ...+..++..     .+..||++||+.+....+
T Consensus       160 q~qrv~lA~aL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~-----~~~tiiivsHd~~~~~~~  218 (530)
T PRK15064        160 WKLRVLLAQALFSNPDILLLDEPTNNLDINTIRWLEDVLNE-----RNSTMIIISHDRHFLNSV  218 (530)
T ss_pred             HHHHHHHHHHHhcCCCEEEEcCCCcccCHHHHHHHHHHHHh-----CCCeEEEEeCCHHHHHhh
Confidence            3344467778888899999998732      2334444432     357899999998876554

>cd03248 ABCC_TAP TAP, the Transporter Associated with Antigen Processing; TAP is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules

Probab=98.45  E-value=1.1e-06  Score=67.23  Aligned_cols=60  Identities=13%  Similarity=0.159  Sum_probs=39.4

Q ss_pred             hHHHHHHHhCCceEEEEEeCCCC------HHHHHHhhcCCCCCCCCcEEEEEeCCchhhhccCCcceEEec
Q 039455          120 GINLIRWRLCRKRVLVVLDDVDQ------LEQLQALAGNHDWFGFGSRIIITTRDEHVLKGHGVTNIYKVR  184 (216)
Q Consensus       120 ~~~~l~~~l~~~~~llvlDd~~~------~~~~~~l~~~~~~~~~~~~il~tsr~~~~~~~~~~~~~~~l~  184 (216)
                      ..-.+...+..++-++++|+...      .+.+..++..+.   .+..+|++||+.+... . ++..+.+.
T Consensus       157 qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~---~~~tii~~sh~~~~~~-~-~d~i~~l~  222 (226)
T cd03248         157 QRVAIARALIRNPQVLILDEATSALDAESEQQVQQALYDWP---ERRTVLVIAHRLSTVE-R-ADQILVLD  222 (226)
T ss_pred             HHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHc---CCCEEEEEECCHHHHH-h-CCEEEEec
Confidence            34457777788899999998732      233444444333   2468999999988774 3 56666553

Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes.

>PRK13638 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=98.45  E-value=9.6e-07  Score=69.47  Aligned_cols=54  Identities=19%  Similarity=0.175  Sum_probs=35.6

Q ss_pred             hHHHHHHHhCCceEEEEEeCCCC------HHHHHHhhcCCCCCCCCcEEEEEeCCchhhhcc
Q 039455          120 GINLIRWRLCRKRVLVVLDDVDQ------LEQLQALAGNHDWFGFGSRIIITTRDEHVLKGH  175 (216)
Q Consensus       120 ~~~~l~~~l~~~~~llvlDd~~~------~~~~~~l~~~~~~~~~~~~il~tsr~~~~~~~~  175 (216)
                      ..-.+...+..++-++++|+..+      ...+..++..+.  ..+..||++||+.+....+
T Consensus       143 qrl~laraL~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~--~~g~tii~vtH~~~~~~~~  202 (271)
T PRK13638        143 KRVAIAGALVLQARYLLLDEPTAGLDPAGRTQMIAIIRRIV--AQGNHVIISSHDIDLIYEI  202 (271)
T ss_pred             HHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHH--HCCCEEEEEeCCHHHHHHh
Confidence            34457777888899999998732      233444444332  2367899999998766543

>cd03281 ABC_MSH5_euk MutS5 homolog in eukaryotes

Probab=98.45  E-value=2.3e-07  Score=70.30  Aligned_cols=23  Identities=22%  Similarity=0.195  Sum_probs=21.0

Q ss_pred             eeEEEEEecCCCcHHHHHHHHHH
Q 039455           49 VRFIGICGMGGIGKTTLAKVLYN   71 (216)
Q Consensus        49 ~~~i~I~G~~GiGKTtL~~~~~~   71 (216)
                      .+.++|+|++|+|||||++.++.
T Consensus        29 ~~~~~itGpNg~GKStlLk~i~~   51 (213)
T cd03281          29 PSIMVITGPNSSGKSVYLKQVAL   51 (213)
T ss_pred             ceEEEEECCCCCChHHHHHHHHH
Confidence            37899999999999999999984

The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c

>PRK14247 phosphate ABC transporter ATP-binding protein; Provisional

Probab=98.45  E-value=1.7e-06  Score=67.27  Aligned_cols=59  Identities=10%  Similarity=0.017  Sum_probs=37.7

Q ss_pred             HHHHHHHhCCceEEEEEeCCC------CHHHHHHhhcCCCCCCCCcEEEEEeCCchhhhccCCcceEEe
Q 039455          121 INLIRWRLCRKRVLVVLDDVD------QLEQLQALAGNHDWFGFGSRIIITTRDEHVLKGHGVTNIYKV  183 (216)
Q Consensus       121 ~~~l~~~l~~~~~llvlDd~~------~~~~~~~l~~~~~~~~~~~~il~tsr~~~~~~~~~~~~~~~l  183 (216)
                      .-.+...+..++-++++|+.-      ..+.+..++..+.   .+..+|++||+.+....+ ++..+.+
T Consensus       154 rv~laral~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~---~~~tiii~sH~~~~~~~~-~d~i~~l  218 (250)
T PRK14247        154 RLCIARALAFQPEVLLADEPTANLDPENTAKIESLFLELK---KDMTIVLVTHFPQQAARI-SDYVAFL  218 (250)
T ss_pred             HHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHh---cCCEEEEEeCCHHHHHHh-cCEEEEE
Confidence            445677777888999999773      2234444444432   257899999998765543 3444444

>cd03300 ABC_PotA_N PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D

Probab=98.45  E-value=1.3e-06  Score=67.12  Aligned_cols=61  Identities=15%  Similarity=0.094  Sum_probs=37.9

Q ss_pred             HHHHHHHhCCceEEEEEeCCC------CHHHHHHhhcCCCCCCCCcEEEEEeCCchhhhccCCcceEEe
Q 039455          121 INLIRWRLCRKRVLVVLDDVD------QLEQLQALAGNHDWFGFGSRIIITTRDEHVLKGHGVTNIYKV  183 (216)
Q Consensus       121 ~~~l~~~l~~~~~llvlDd~~------~~~~~~~l~~~~~~~~~~~~il~tsr~~~~~~~~~~~~~~~l  183 (216)
                      .-.+...+..++-++++|+..      ....+..++..+.. ..+.+||++||+......+ +++.+.+
T Consensus       138 rl~laral~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~-~~~~tiii~sh~~~~~~~~-~d~i~~l  204 (232)
T cd03300         138 RVAIARALVNEPKVLLLDEPLGALDLKLRKDMQLELKRLQK-ELGITFVFVTHDQEEALTM-SDRIAVM  204 (232)
T ss_pred             HHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHH-HcCCEEEEEeCCHHHHHHh-cCEEEEE
Confidence            345777788888999999873      22334444433321 1367899999998765443 3344433

PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK13643 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=98.45  E-value=1.3e-06  Score=69.36  Aligned_cols=54  Identities=15%  Similarity=0.081  Sum_probs=36.0

Q ss_pred             hhHHHHHHHhCCceEEEEEeCCC------CHHHHHHhhcCCCCCCCCcEEEEEeCCchhhhc
Q 039455          119 KGINLIRWRLCRKRVLVVLDDVD------QLEQLQALAGNHDWFGFGSRIIITTRDEHVLKG  174 (216)
Q Consensus       119 ~~~~~l~~~l~~~~~llvlDd~~------~~~~~~~l~~~~~~~~~~~~il~tsr~~~~~~~  174 (216)
                      .....+...+..++-++++|+.-      ....+..++..+.  ..+..||++||+.+.+..
T Consensus       150 kqrvaiA~aL~~~p~illLDEPt~gLD~~~~~~l~~~l~~l~--~~g~til~vtHd~~~~~~  209 (288)
T PRK13643        150 MRRVAIAGILAMEPEVLVLDEPTAGLDPKARIEMMQLFESIH--QSGQTVVLVTHLMDDVAD  209 (288)
T ss_pred             HHHHHHHHHHHhCCCEEEEECCccCCCHHHHHHHHHHHHHHH--HCCCEEEEEecCHHHHHH
Confidence            33446778888888999999773      2233444443333  246789999999876544

>PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional

Probab=98.44  E-value=1.4e-06  Score=68.40  Aligned_cols=56  Identities=14%  Similarity=0.105  Sum_probs=35.9

Q ss_pred             hhHHHHHHHhCCceEEEEEeCCCC------HHHHHHhhcCCCCCCCCcEEEEEeCCchhhhcc
Q 039455          119 KGINLIRWRLCRKRVLVVLDDVDQ------LEQLQALAGNHDWFGFGSRIIITTRDEHVLKGH  175 (216)
Q Consensus       119 ~~~~~l~~~l~~~~~llvlDd~~~------~~~~~~l~~~~~~~~~~~~il~tsr~~~~~~~~  175 (216)
                      ...-.+...+..++-++++|+...      ...+..++..+.. ..+..||++||+.+....+
T Consensus       153 ~qrv~laral~~~p~lllLDEPt~~LD~~~~~~~~~~l~~l~~-~~~~tiii~sH~~~~i~~~  214 (265)
T PRK10575        153 RQRAWIAMLVAQDSRCLLLDEPTSALDIAHQVDVLALVHRLSQ-ERGLTVIAVLHDINMAARY  214 (265)
T ss_pred             HHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHH-hcCCEEEEEeCCHHHHHHh
Confidence            334457778888999999998732      2333344433321 2367899999998765543

>PRK08939 primosomal protein DnaI; Reviewed

Probab=98.44  E-value=1.4e-06  Score=69.51  Aligned_cols=55  Identities=24%  Similarity=0.231  Sum_probs=37.9

Q ss_pred             cchhHHHHHHHHHhcC--CCCeeEEEEEecCCCcHHHHHHHHHHHhcCCCCceEeec
Q 039455           30 GIASRMEKMNGYLEAG--LDDVRFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLA   84 (216)
Q Consensus        30 gR~~~~~~l~~~l~~~--~~~~~~i~I~G~~GiGKTtL~~~~~~~~~~~~~~~~~~~   84 (216)
                      +|....+....++..-  ......+.|+|+.|+|||+|+..+++.+......+.++.
T Consensus       135 ~~~~~~~~~~~fi~~~~~~~~~~gl~L~G~~G~GKThLa~Aia~~l~~~g~~v~~~~  191 (306)
T PRK08939        135 DRLDALMAALDFLEAYPPGEKVKGLYLYGDFGVGKSYLLAAIANELAKKGVSSTLLH  191 (306)
T ss_pred             HHHHHHHHHHHHHHHhhccCCCCeEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEEE
Confidence            4444445555565532  224578999999999999999999998765544455553

>PRK10636 putative ABC transporter ATP-binding protein; Provisional

Probab=98.44  E-value=1.4e-06  Score=76.39  Aligned_cols=124  Identities=17%  Similarity=0.203  Sum_probs=67.1

Q ss_pred             CCeeEEEEEecCCCcHHHHHHHHHHHhcCCCCce--------Eeecccc--ccccccCchHH------------HHHHHH
Q 039455           47 DDVRFIGICGMGGIGKTTLAKVLYNTLKDQFEAS--------SFLANVR--EVSVTRGLVPL------------QEQLLS  104 (216)
Q Consensus        47 ~~~~~i~I~G~~GiGKTtL~~~~~~~~~~~~~~~--------~~~~~~~--~~~~~~~~~~~------------~~~l~~  104 (216)
                      ..+..++|+|++|+|||||++.+++.....-..+        .|+.-..  ...........            ...++.
T Consensus       336 ~~Ge~~~l~G~NGsGKSTLlk~l~G~~~p~~G~i~~~~~~~igy~~Q~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~  415 (638)
T PRK10636        336 VPGSRIGLLGRNGAGKSTLIKLLAGELAPVSGEIGLAKGIKLGYFAQHQLEFLRADESPLQHLARLAPQELEQKLRDYLG  415 (638)
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEECCCEEEEEecCcchhhCCccchHHHHHHHhCchhhHHHHHHHHH
Confidence            3468999999999999999999998654321111        1111000  00000011100            011111


Q ss_pred             HHHhh------ccccccchhhhHHHHHHHhCCceEEEEEeCCC------CHHHHHHhhcCCCCCCCCcEEEEEeCCchhh
Q 039455          105 EVLME------RNLIIWDVHKGINLIRWRLCRKRVLVVLDDVD------QLEQLQALAGNHDWFGFGSRIIITTRDEHVL  172 (216)
Q Consensus       105 ~~~~~------~~~~~~~~~~~~~~l~~~l~~~~~llvlDd~~------~~~~~~~l~~~~~~~~~~~~il~tsr~~~~~  172 (216)
                      .+.-.      .....+..+...-.+...+..++-+|+||+.-      +...+..++..+    . ..||++||+.+++
T Consensus       416 ~~~l~~~~~~~~~~~LSgGekqRl~La~~l~~~p~lLlLDEPt~~LD~~~~~~l~~~L~~~----~-gtvi~vSHd~~~~  490 (638)
T PRK10636        416 GFGFQGDKVTEETRRFSGGEKARLVLALIVWQRPNLLLLDEPTNHLDLDMRQALTEALIDF----E-GALVVVSHDRHLL  490 (638)
T ss_pred             HcCCChhHhcCchhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHHc----C-CeEEEEeCCHHHH
Confidence            11000      00111222333445777888899999999773      334555555554    2 3799999999887


Q ss_pred             hcc
Q 039455          173 KGH  175 (216)
Q Consensus       173 ~~~  175 (216)
                      ..+
T Consensus       491 ~~~  493 (638)
T PRK10636        491 RST  493 (638)
T ss_pred             HHh
Confidence            665

>PRK09580 sufC cysteine desulfurase ATPase component; Reviewed

Probab=98.44  E-value=2.1e-06  Score=66.56  Aligned_cols=55  Identities=22%  Similarity=0.122  Sum_probs=36.7

Q ss_pred             hhHHHHHHHhCCceEEEEEeCCC------CHHHHHHhhcCCCCCCCCcEEEEEeCCchhhhcc
Q 039455          119 KGINLIRWRLCRKRVLVVLDDVD------QLEQLQALAGNHDWFGFGSRIIITTRDEHVLKGH  175 (216)
Q Consensus       119 ~~~~~l~~~l~~~~~llvlDd~~------~~~~~~~l~~~~~~~~~~~~il~tsr~~~~~~~~  175 (216)
                      ...-.+...+..++-++++|+.-      +.+.+..++..+.  ..+..||++||+.......
T Consensus       151 ~qrv~laral~~~p~illLDEPt~~LD~~~~~~l~~~l~~l~--~~~~tiii~sH~~~~~~~~  211 (248)
T PRK09580        151 KKRNDILQMAVLEPELCILDESDSGLDIDALKIVADGVNSLR--DGKRSFIIVTHYQRILDYI  211 (248)
T ss_pred             HHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHH--hCCCEEEEEeCCHHHHHhh
Confidence            34445777888889999999873      2234444443332  3467899999998776653

>cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment

Probab=98.44  E-value=1.4e-06  Score=67.34  Aligned_cols=28  Identities=29%  Similarity=0.440  Sum_probs=24.1

Q ss_pred             CCeeEEEEEecCCCcHHHHHHHHHHHhc
Q 039455           47 DDVRFIGICGMGGIGKTTLAKVLYNTLK   74 (216)
Q Consensus        47 ~~~~~i~I~G~~GiGKTtL~~~~~~~~~   74 (216)
                      ..+..++|.|++|+|||||++.+++...
T Consensus        25 ~~Ge~~~i~G~nGsGKSTLl~~l~G~~~   52 (242)
T cd03295          25 AKGEFLVLIGPSGSGKTTTMKMINRLIE   52 (242)
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence            3467999999999999999999998543

ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>KOG1514 consensus Origin recognition complex, subunit 1, and related proteins [Replication, recombination and repair]

Probab=98.44  E-value=8.3e-06  Score=70.05  Aligned_cols=170  Identities=11%  Similarity=0.119  Sum_probs=101.6

Q ss_pred             cccccccchhHHHHHHHHHhcC---CCCeeEEEEEecCCCcHHHHHHHHHHHhcC-----CCCceEeeccccccccccCc
Q 039455           24 AVDGLVGIASRMEKMNGYLEAG---LDDVRFIGICGMGGIGKTTLAKVLYNTLKD-----QFEASSFLANVREVSVTRGL   95 (216)
Q Consensus        24 ~~~~~vgR~~~~~~l~~~l~~~---~~~~~~i~I~G~~GiGKTtL~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~   95 (216)
                      .+..+-+|+.+...|..++...   ...+.++.|+|.+|+|||.++..+...++.     ..+...|+. .- --.....
T Consensus       394 vp~sLpcRe~E~~~I~~f~~~~i~~~~~g~~mYIsGvPGtGKT~tV~~Vm~~Lq~~s~~~e~p~f~yve-IN-gm~l~~~  471 (767)
T KOG1514|consen  394 VPESLPCRENEFSEIEDFLRSFISDQGLGSCMYISGVPGTGKTATVLEVMKELQTSSAQKELPKFDYVE-IN-GLRLASP  471 (767)
T ss_pred             ccccccchhHHHHHHHHHHHhhcCCCCCceeEEEecCCCCCceehHHHHHHHHHHHHhhcCCCCccEEE-Ec-ceeecCH
Confidence            5667889999999999987732   245669999999999999999999885441     122222221 00 0112234


Q ss_pred             hHHHHHHHHHHHhhccccccchhhhHHHHHHHhC-----CceEEEEEeCCCCH-----HHHHHhhcCCCCCCCCcEEEEE
Q 039455           96 VPLQEQLLSEVLMERNLIIWDVHKGINLIRWRLC-----RKRVLVVLDDVDQL-----EQLQALAGNHDWFGFGSRIIIT  165 (216)
Q Consensus        96 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~-----~~~~llvlDd~~~~-----~~~~~l~~~~~~~~~~~~il~t  165 (216)
                      ..+...+...    .+.....+....+.+...+.     .+++++++|++|.+     +-+..++.-..  .++++++|.
T Consensus       472 ~~~Y~~I~~~----lsg~~~~~~~al~~L~~~f~~~k~~~~~~VvLiDElD~Lvtr~QdVlYn~fdWpt--~~~sKLvvi  545 (767)
T KOG1514|consen  472 REIYEKIWEA----LSGERVTWDAALEALNFRFTVPKPKRSTTVVLIDELDILVTRSQDVLYNIFDWPT--LKNSKLVVI  545 (767)
T ss_pred             HHHHHHHHHh----cccCcccHHHHHHHHHHhhccCCCCCCCEEEEeccHHHHhcccHHHHHHHhcCCc--CCCCceEEE
Confidence            4444444444    33444455556666665554     24789999999754     22333332222  244544333


Q ss_pred             e--CCchhhh---------ccCCcceEEecCCChHHHHHHHhhhhcCC
Q 039455          166 T--RDEHVLK---------GHGVTNIYKVRGLDYVEALQLFHLKVSKG  202 (216)
Q Consensus       166 s--r~~~~~~---------~~~~~~~~~l~~l~~~~~~~ll~~~~~~~  202 (216)
                      +  ...++..         .+ ....+.+.|.+-+|..+++..+.-+.
T Consensus       546 ~IaNTmdlPEr~l~nrvsSRl-g~tRi~F~pYth~qLq~Ii~~RL~~~  592 (767)
T KOG1514|consen  546 AIANTMDLPERLLMNRVSSRL-GLTRICFQPYTHEQLQEIISARLKGL  592 (767)
T ss_pred             EecccccCHHHHhccchhhhc-cceeeecCCCCHHHHHHHHHHhhcch
Confidence            2  2222222         22 45678899999988888887766443

>PRK10733 hflB ATP-dependent metalloprotease; Reviewed

Probab=98.44  E-value=2.8e-06  Score=74.52  Aligned_cols=153  Identities=18%  Similarity=0.177  Sum_probs=85.7

Q ss_pred             cccccchhHHHHHHHHHhcC----------CCCeeEEEEEecCCCcHHHHHHHHHHHhcCCCCceEeeccccccccccCc
Q 039455           26 DGLVGIASRMEKMNGYLEAG----------LDDVRFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLANVREVSVTRGL   95 (216)
Q Consensus        26 ~~~vgR~~~~~~l~~~l~~~----------~~~~~~i~I~G~~GiGKTtL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   95 (216)
                      ..+.|.+...+++.+.+...          ..-.+.++++||+|+|||++++.++......|   +.++ ...       
T Consensus       152 ~di~g~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~gill~G~~G~GKt~~~~~~a~~~~~~f---~~is-~~~-------  220 (644)
T PRK10733        152 ADVAGCDEAKEEVAELVEYLREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGEAKVPF---FTIS-GSD-------  220 (644)
T ss_pred             HHHcCHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCcEEEECCCCCCHHHHHHHHHHHcCCCE---EEEe-hHH-------
Confidence            45667776666665544311          11234699999999999999999988764322   1111 000       


Q ss_pred             hHHHHHHHHHHHhhccccccchhhhHHHHHHHhCCceEEEEEeCCCCHH----------------HHHHhhcCCCCC--C
Q 039455           96 VPLQEQLLSEVLMERNLIIWDVHKGINLIRWRLCRKRVLVVLDDVDQLE----------------QLQALAGNHDWF--G  157 (216)
Q Consensus        96 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~llvlDd~~~~~----------------~~~~l~~~~~~~--~  157 (216)
                        +....     ..     .........+.......+++|+|||++...                .+..++..+...  .
T Consensus       221 --~~~~~-----~g-----~~~~~~~~~f~~a~~~~P~IifIDEiD~l~~~r~~~~~g~~~~~~~~ln~lL~~mdg~~~~  288 (644)
T PRK10733        221 --FVEMF-----VG-----VGASRVRDMFEQAKKAAPCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFEGN  288 (644)
T ss_pred             --hHHhh-----hc-----ccHHHHHHHHHHHHhcCCcEEEehhHhhhhhccCCCCCCCchHHHHHHHHHHHhhhcccCC
Confidence              10000     00     011122233444444578999999986541                123333222211  2


Q ss_pred             CCcEEEEEeCCchhhhcc-----CCcceEEecCCChHHHHHHHhhhhcC
Q 039455          158 FGSRIIITTRDEHVLKGH-----GVTNIYKVRGLDYVEALQLFHLKVSK  201 (216)
Q Consensus       158 ~~~~il~tsr~~~~~~~~-----~~~~~~~l~~l~~~~~~~ll~~~~~~  201 (216)
                      .+..+|.||..++.+...     ..+..+.++..+.++..++++.+...
T Consensus       289 ~~vivIaaTN~p~~lD~Al~RpgRfdr~i~v~~Pd~~~R~~Il~~~~~~  337 (644)
T PRK10733        289 EGIIVIAATNRPDVLDPALLRPGRFDRQVVVGLPDVRGREQILKVHMRR  337 (644)
T ss_pred             CCeeEEEecCChhhcCHHHhCCcccceEEEcCCCCHHHHHHHHHHHhhc
Confidence            344556677765533321     24678899999999999999877644

>COG4586 ABC-type uncharacterized transport system, ATPase component [General function prediction only]

Probab=98.44  E-value=2.1e-06  Score=65.99  Aligned_cols=145  Identities=13%  Similarity=0.073  Sum_probs=78.5

Q ss_pred             cccccchhHHHHHHHHHhcCCCCeeEEEEEecCCCcHHHHHHHHHHHhcCCC---------------------------C
Q 039455           26 DGLVGIASRMEKMNGYLEAGLDDVRFIGICGMGGIGKTTLAKVLYNTLKDQF---------------------------E   78 (216)
Q Consensus        26 ~~~vgR~~~~~~l~~~l~~~~~~~~~i~I~G~~GiGKTtL~~~~~~~~~~~~---------------------------~   78 (216)
                      ..|+-|....-.-..-++..-+.+.++++.|++|.||||+++.+-+.+....                           .
T Consensus        27 ~~~~~~k~~~~~AVqdisf~IP~G~ivgflGaNGAGKSTtLKmLTGll~p~~G~v~V~G~~Pf~~~~~~~~~~~~v~gqk  106 (325)
T COG4586          27 NHFFHRKERSIEAVQDISFEIPKGEIVGFLGANGAGKSTTLKMLTGLLLPTSGKVRVNGKDPFRRREEYLRSIGLVMGQK  106 (325)
T ss_pred             HhhcCchhhhhhhhheeeeecCCCcEEEEEcCCCCcchhhHHHHhCccccCCCeEEecCcCcchhHHHHHHHHHHHhhhh
Confidence            4566666644443333444446678999999999999999999987543211                           1


Q ss_pred             ceEeeccccccccccCch--------HHHHHH---HHHHHhhc---cc---cccchhhhHHHHHHHhCCceEEEEEeCC-
Q 039455           79 ASSFLANVREVSVTRGLV--------PLQEQL---LSEVLMER---NL---IIWDVHKGINLIRWRLCRKRVLVVLDDV-  140 (216)
Q Consensus        79 ~~~~~~~~~~~~~~~~~~--------~~~~~l---~~~~~~~~---~~---~~~~~~~~~~~l~~~l~~~~~llvlDd~-  140 (216)
                      ...||+.....  ...+.        ....+-   +.++..-.   ..   ..+..+.....+...+-..+-+|+||+. 
T Consensus       107 ~ql~Wdlp~~d--s~~v~~~Iy~Ipd~~F~~r~~~l~eiLdl~~~lk~~vr~LSlGqRmraeLaaaLLh~p~VLfLDEpT  184 (325)
T COG4586         107 LQLWWDLPALD--SLEVLKLIYEIPDDEFAERLDFLTEILDLEGFLKWPVRKLSLGQRMRAELAAALLHPPKVLFLDEPT  184 (325)
T ss_pred             heeeeechhhh--hHHHHHHHHhCCHHHHHHHHHHHHHHhcchhhhhhhhhhccchHHHHHHHHHHhcCCCcEEEecCCc
Confidence            23444321100  00000        000000   11111111   01   1123344455577777788999999965 


Q ss_pred             ---C--CHHHHHHhhcCCCCCCCCcEEEEEeCCchhhh
Q 039455          141 ---D--QLEQLQALAGNHDWFGFGSRIIITTRDEHVLK  173 (216)
Q Consensus       141 ---~--~~~~~~~l~~~~~~~~~~~~il~tsr~~~~~~  173 (216)
                         |  .-..+..++..++ ...+++|++|||+-.-..
T Consensus       185 vgLDV~aq~~ir~Flke~n-~~~~aTVllTTH~~~di~  221 (325)
T COG4586         185 VGLDVNAQANIREFLKEYN-EERQATVLLTTHIFDDIA  221 (325)
T ss_pred             cCcchhHHHHHHHHHHHHH-HhhCceEEEEecchhhHH
Confidence               2  3344556655443 135789999999864433

>cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins

Probab=98.43  E-value=1e-06  Score=67.70  Aligned_cols=60  Identities=12%  Similarity=0.109  Sum_probs=40.2

Q ss_pred             hhHHHHHHHhCCceEEEEEeCCC------CHHHHHHhhcCCCCCCCCcEEEEEeCCchhhhccCCcceEEe
Q 039455          119 KGINLIRWRLCRKRVLVVLDDVD------QLEQLQALAGNHDWFGFGSRIIITTRDEHVLKGHGVTNIYKV  183 (216)
Q Consensus       119 ~~~~~l~~~l~~~~~llvlDd~~------~~~~~~~l~~~~~~~~~~~~il~tsr~~~~~~~~~~~~~~~l  183 (216)
                      ...-.+...+..++-++++|+.-      ..+.+..++..+.   .+..||++||+......  +++.+.+
T Consensus       144 ~qrv~la~al~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~---~~~tii~~sh~~~~~~~--~d~v~~l  209 (234)
T cd03251         144 RQRIAIARALLKDPPILILDEATSALDTESERLVQAALERLM---KNRTTFVIAHRLSTIEN--ADRIVVL  209 (234)
T ss_pred             HHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHhc---CCCEEEEEecCHHHHhh--CCEEEEe
Confidence            34446778888889999999773      2244445554443   35789999999877654  5555555

ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1)

Probab=98.43  E-value=3.1e-06  Score=63.83  Aligned_cols=61  Identities=13%  Similarity=0.139  Sum_probs=39.5

Q ss_pred             hhHHHHHHHhCCceEEEEEeCCCC------HHHHHHhhcCCCCCCCCcEEEEEeCCchhhhccCCcceEEec
Q 039455          119 KGINLIRWRLCRKRVLVVLDDVDQ------LEQLQALAGNHDWFGFGSRIIITTRDEHVLKGHGVTNIYKVR  184 (216)
Q Consensus       119 ~~~~~l~~~l~~~~~llvlDd~~~------~~~~~~l~~~~~~~~~~~~il~tsr~~~~~~~~~~~~~~~l~  184 (216)
                      ...-.+...+..++-++++|+...      .+.+..++..+.   .+..+|++||+.+....  ++..+.+.
T Consensus       131 ~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~---~~~tiii~th~~~~~~~--~d~v~~l~  197 (207)
T cd03369         131 RQLLCLARALLKRPRVLVLDEATASIDYATDALIQKTIREEF---TNSTILTIAHRLRTIID--YDKILVMD  197 (207)
T ss_pred             HHHHHHHHHHhhCCCEEEEeCCcccCCHHHHHHHHHHHHHhc---CCCEEEEEeCCHHHHhh--CCEEEEEE
Confidence            334457777888899999998742      233444444332   36789999999877643  45555554

NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate.

>TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system

Probab=98.43  E-value=1.7e-06  Score=66.71  Aligned_cols=61  Identities=13%  Similarity=0.071  Sum_probs=38.7

Q ss_pred             HHHHHHHhCCceEEEEEeCCCC------HHHHHHhhcCCCCCCCCcEEEEEeCCchhhhccCCcceEEec
Q 039455          121 INLIRWRLCRKRVLVVLDDVDQ------LEQLQALAGNHDWFGFGSRIIITTRDEHVLKGHGVTNIYKVR  184 (216)
Q Consensus       121 ~~~l~~~l~~~~~llvlDd~~~------~~~~~~l~~~~~~~~~~~~il~tsr~~~~~~~~~~~~~~~l~  184 (216)
                      .-.+...+..++-++++|+...      .+.+..++..+.. ..+..+|++||+.+....  +++.+.+.
T Consensus       140 rl~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~~~tiii~sH~~~~~~~--~d~i~~l~  206 (236)
T TIGR03864       140 RVEIARALLHRPALLLLDEPTVGLDPASRAAIVAHVRALCR-DQGLSVLWATHLVDEIEA--DDRLVVLH  206 (236)
T ss_pred             HHHHHHHHhcCCCEEEEcCCccCCCHHHHHHHHHHHHHHHH-hCCCEEEEEecChhhHhh--CCEEEEEe
Confidence            3357778888899999998732      2334344433321 136789999999887653  55555553

Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification.

>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional

Probab=98.43  E-value=1.1e-06  Score=72.82  Aligned_cols=55  Identities=22%  Similarity=0.230  Sum_probs=42.4

Q ss_pred             cccccchhHHHHHHHHHhcCCCCeeEEEEEecCCCcHHHHHHHHHHHhcCC--CCceEeec
Q 039455           26 DGLVGIASRMEKMNGYLEAGLDDVRFIGICGMGGIGKTTLAKVLYNTLKDQ--FEASSFLA   84 (216)
Q Consensus        26 ~~~vgR~~~~~~l~~~l~~~~~~~~~i~I~G~~GiGKTtL~~~~~~~~~~~--~~~~~~~~   84 (216)
                      .+.++.++.++.+...+..+    ..++++|++|+|||++|+.++..+...  +..+.|+.
T Consensus       175 ~d~~i~e~~le~l~~~L~~~----~~iil~GppGtGKT~lA~~la~~l~~~~~~~~v~~Vt  231 (459)
T PRK11331        175 NDLFIPETTIETILKRLTIK----KNIILQGPPGVGKTFVARRLAYLLTGEKAPQRVNMVQ  231 (459)
T ss_pred             hcccCCHHHHHHHHHHHhcC----CCEEEECCCCCCHHHHHHHHHHHhcCCcccceeeEEe
Confidence            45778888898888887643    688999999999999999999876532  33445554

>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group

Probab=98.43  E-value=1.7e-06  Score=65.14  Aligned_cols=51  Identities=22%  Similarity=0.249  Sum_probs=34.2

Q ss_pred             HHHHHHHhCCceEEEEEeCCCC------HHHHHHhhcCCCCCCCCcEEEEEeCCchhhh
Q 039455          121 INLIRWRLCRKRVLVVLDDVDQ------LEQLQALAGNHDWFGFGSRIIITTRDEHVLK  173 (216)
Q Consensus       121 ~~~l~~~l~~~~~llvlDd~~~------~~~~~~l~~~~~~~~~~~~il~tsr~~~~~~  173 (216)
                      .-.+...+..++-++++|+..+      .+.+..++..+.  ..+..+|++||+.....
T Consensus       142 r~~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~--~~~~tii~~sh~~~~~~  198 (206)
T TIGR03608       142 RVALARAILKDPPLILADEPTGSLDPKNRDEVLDLLLELN--DEGKTIIIVTHDPEVAK  198 (206)
T ss_pred             HHHHHHHHHcCCCEEEEeCCcCCCCHHHHHHHHHHHHHHH--hcCCEEEEEeCCHHHHh
Confidence            3457778888999999998732      233444443332  24678999999987654

A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.

>PRK14250 phosphate ABC transporter ATP-binding protein; Provisional

Probab=98.43  E-value=1.8e-06  Score=66.72  Aligned_cols=55  Identities=16%  Similarity=0.104  Sum_probs=35.0

Q ss_pred             hHHHHHHHhCCceEEEEEeCCCC------HHHHHHhhcCCCCCCCCcEEEEEeCCchhhhcc
Q 039455          120 GINLIRWRLCRKRVLVVLDDVDQ------LEQLQALAGNHDWFGFGSRIIITTRDEHVLKGH  175 (216)
Q Consensus       120 ~~~~l~~~l~~~~~llvlDd~~~------~~~~~~l~~~~~~~~~~~~il~tsr~~~~~~~~  175 (216)
                      ..-.+...+..++-++++|+..+      .+.+..++..+.. ..+..||++||+.+....+
T Consensus       138 qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~g~tii~~sH~~~~~~~~  198 (241)
T PRK14250        138 QRVSIARTLANNPEVLLLDEPTSALDPTSTEIIEELIVKLKN-KMNLTVIWITHNMEQAKRI  198 (241)
T ss_pred             HHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHH-hCCCEEEEEeccHHHHHHh
Confidence            34457777788889999998732      2333333333321 1367899999998775543

>PRK13541 cytochrome c biogenesis protein CcmA; Provisional

Probab=98.43  E-value=1.6e-06  Score=64.79  Aligned_cols=28  Identities=21%  Similarity=0.331  Sum_probs=24.3

Q ss_pred             CCeeEEEEEecCCCcHHHHHHHHHHHhc
Q 039455           47 DDVRFIGICGMGGIGKTTLAKVLYNTLK   74 (216)
Q Consensus        47 ~~~~~i~I~G~~GiGKTtL~~~~~~~~~   74 (216)
                      ..+..++|.|++|+|||||++.+++...
T Consensus        24 ~~Ge~~~l~G~nGsGKSTLl~~l~G~~~   51 (195)
T PRK13541         24 LPSAITYIKGANGCGKSSLLRMIAGIMQ   51 (195)
T ss_pred             cCCcEEEEECCCCCCHHHHHHHHhcCCC
Confidence            3457999999999999999999998543

>TIGR01978 sufC FeS assembly ATPase SufC

Probab=98.43  E-value=2.1e-06  Score=66.36  Aligned_cols=63  Identities=17%  Similarity=0.099  Sum_probs=39.9

Q ss_pred             hhHHHHHHHhCCceEEEEEeCCC------CHHHHHHhhcCCCCCCCCcEEEEEeCCchhhhccCCcceEEe
Q 039455          119 KGINLIRWRLCRKRVLVVLDDVD------QLEQLQALAGNHDWFGFGSRIIITTRDEHVLKGHGVTNIYKV  183 (216)
Q Consensus       119 ~~~~~l~~~l~~~~~llvlDd~~------~~~~~~~l~~~~~~~~~~~~il~tsr~~~~~~~~~~~~~~~l  183 (216)
                      ...-.+...+..++-++++|+.-      ..+.+..++..+.  ..+..||++||+.+....+.++..+.+
T Consensus       150 ~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~--~~~~tvi~vsH~~~~~~~~~~d~i~~l  218 (243)
T TIGR01978       150 KKRNEILQMALLEPKLAILDEIDSGLDIDALKIVAEGINRLR--EPDRSFLIITHYQRLLNYIKPDYVHVL  218 (243)
T ss_pred             HHHHHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHH--HCCcEEEEEEecHHHHHhhcCCeEEEE
Confidence            33445777888889999999873      2234444444433  246789999999887665423343333

SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA.

>TIGR03005 ectoine_ehuA ectoine/hydroxyectoine ABC transporter, ATP-binding protein

Probab=98.43  E-value=1.7e-06  Score=67.25  Aligned_cols=28  Identities=21%  Similarity=0.343  Sum_probs=24.3

Q ss_pred             CCeeEEEEEecCCCcHHHHHHHHHHHhc
Q 039455           47 DDVRFIGICGMGGIGKTTLAKVLYNTLK   74 (216)
Q Consensus        47 ~~~~~i~I~G~~GiGKTtL~~~~~~~~~   74 (216)
                      ..+..++|.|++|+|||||++.+++...
T Consensus        24 ~~Ge~~~i~G~nGsGKSTLl~~l~G~~~   51 (252)
T TIGR03005        24 AAGEKVALIGPSGSGKSTILRILMTLEP   51 (252)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence            3468999999999999999999998543

Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins.

>PRK11650 ugpC glycerol-3-phosphate transporter ATP-binding subunit; Provisional

Probab=98.42  E-value=5.6e-07  Score=73.40  Aligned_cols=58  Identities=9%  Similarity=0.027  Sum_probs=36.9

Q ss_pred             hhhhHHHHHHHhCCceEEEEEeCCCC------HHHHHHhhcCCCCCCCCcEEEEEeCCchhhhcc
Q 039455          117 VHKGINLIRWRLCRKRVLVVLDDVDQ------LEQLQALAGNHDWFGFGSRIIITTRDEHVLKGH  175 (216)
Q Consensus       117 ~~~~~~~l~~~l~~~~~llvlDd~~~------~~~~~~l~~~~~~~~~~~~il~tsr~~~~~~~~  175 (216)
                      .+.....+.+.+..++-++++|+.-+      .+.+...+..+.. ..+..+|++||+...+..+
T Consensus       138 Gq~QRvalARAL~~~P~llLLDEP~s~LD~~~r~~l~~~l~~l~~-~~g~tii~vTHd~~ea~~l  201 (356)
T PRK11650        138 GQRQRVAMGRAIVREPAVFLFDEPLSNLDAKLRVQMRLEIQRLHR-RLKTTSLYVTHDQVEAMTL  201 (356)
T ss_pred             HHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHH-hcCCEEEEEeCCHHHHHHh
Confidence            34445568888899999999998732      2333333332210 2367899999998655443

>PRK11231 fecE iron-dicitrate transporter ATP-binding subunit; Provisional

Probab=98.42  E-value=2.4e-06  Score=66.65  Aligned_cols=54  Identities=15%  Similarity=0.180  Sum_probs=35.5

Q ss_pred             hHHHHHHHhCCceEEEEEeCCC------CHHHHHHhhcCCCCCCCCcEEEEEeCCchhhhcc
Q 039455          120 GINLIRWRLCRKRVLVVLDDVD------QLEQLQALAGNHDWFGFGSRIIITTRDEHVLKGH  175 (216)
Q Consensus       120 ~~~~l~~~l~~~~~llvlDd~~------~~~~~~~l~~~~~~~~~~~~il~tsr~~~~~~~~  175 (216)
                      ..-.+...+..++-++++|+..      ..+.+..++..+.  ..+..+|++||+......+
T Consensus       145 qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~l~--~~~~tiii~tH~~~~~~~~  204 (255)
T PRK11231        145 QRAFLAMVLAQDTPVVLLDEPTTYLDINHQVELMRLMRELN--TQGKTVVTVLHDLNQASRY  204 (255)
T ss_pred             HHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHH--HCCCEEEEEECCHHHHHHh
Confidence            3445777888889999999873      2233444443332  2367899999998765443

>PRK15056 manganese/iron transporter ATP-binding protein; Provisional

Probab=98.42  E-value=1.9e-06  Score=67.82  Aligned_cols=55  Identities=11%  Similarity=0.184  Sum_probs=36.1

Q ss_pred             hhHHHHHHHhCCceEEEEEeCCC------CHHHHHHhhcCCCCCCCCcEEEEEeCCchhhhcc
Q 039455          119 KGINLIRWRLCRKRVLVVLDDVD------QLEQLQALAGNHDWFGFGSRIIITTRDEHVLKGH  175 (216)
Q Consensus       119 ~~~~~l~~~l~~~~~llvlDd~~------~~~~~~~l~~~~~~~~~~~~il~tsr~~~~~~~~  175 (216)
                      ...-.+...+..++-++++|+.-      ....+..++..+.  ..+..+|++||+.+....+
T Consensus       148 ~qrv~laraL~~~p~llllDEPt~~LD~~~~~~l~~~L~~~~--~~g~tviivsH~~~~~~~~  208 (272)
T PRK15056        148 KKRVFLARAIAQQGQVILLDEPFTGVDVKTEARIISLLRELR--DEGKTMLVSTHNLGSVTEF  208 (272)
T ss_pred             HHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHH--hCCCEEEEEeCCHHHHHHh
Confidence            33445777888889999999873      2234444444433  2467899999998665443

>cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters

Probab=98.42  E-value=3.9e-06  Score=63.87  Aligned_cols=61  Identities=20%  Similarity=0.233  Sum_probs=40.0

Q ss_pred             hhHHHHHHHhCCceEEEEEeCCC------CHHHHHHhhcCCCCCCCCcEEEEEeCCchhhhccCCcceEEec
Q 039455          119 KGINLIRWRLCRKRVLVVLDDVD------QLEQLQALAGNHDWFGFGSRIIITTRDEHVLKGHGVTNIYKVR  184 (216)
Q Consensus       119 ~~~~~l~~~l~~~~~llvlDd~~------~~~~~~~l~~~~~~~~~~~~il~tsr~~~~~~~~~~~~~~~l~  184 (216)
                      ...-.+...+..++-++++|+.-      ....+..++..+.  . +..||++||+.+... + +++.+.+.
T Consensus       146 ~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~--~-~~tii~~sH~~~~~~-~-~d~v~~l~  212 (220)
T cd03245         146 RQAVALARALLNDPPILLLDEPTSAMDMNSEERLKERLRQLL--G-DKTLIIITHRPSLLD-L-VDRIIVMD  212 (220)
T ss_pred             HHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHhc--C-CCEEEEEeCCHHHHH-h-CCEEEEEe
Confidence            33445777777888999999773      2344555555443  2 368999999988763 3 55655553

Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane.

>TIGR02770 nickel_nikD nickel import ATP-binding protein NikD

Probab=98.42  E-value=1.7e-06  Score=66.45  Aligned_cols=28  Identities=18%  Similarity=0.294  Sum_probs=24.7

Q ss_pred             CeeEEEEEecCCCcHHHHHHHHHHHhcC
Q 039455           48 DVRFIGICGMGGIGKTTLAKVLYNTLKD   75 (216)
Q Consensus        48 ~~~~i~I~G~~GiGKTtL~~~~~~~~~~   75 (216)
                      .+.+++|.|++|+|||||++.+++....
T Consensus        11 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p   38 (230)
T TIGR02770        11 RGEVLALVGESGSGKSLTCLAILGLLPP   38 (230)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhcCCCC
Confidence            4679999999999999999999987653

This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous.

>TIGR03411 urea_trans_UrtD urea ABC transporter, ATP-binding protein UrtD

Probab=98.42  E-value=3.4e-06  Score=65.19  Aligned_cols=60  Identities=13%  Similarity=0.123  Sum_probs=38.4

Q ss_pred             hHHHHHHHhCCceEEEEEeCCCC------HHHHHHhhcCCCCCCCCcEEEEEeCCchhhhccCCcceEEe
Q 039455          120 GINLIRWRLCRKRVLVVLDDVDQ------LEQLQALAGNHDWFGFGSRIIITTRDEHVLKGHGVTNIYKV  183 (216)
Q Consensus       120 ~~~~l~~~l~~~~~llvlDd~~~------~~~~~~l~~~~~~~~~~~~il~tsr~~~~~~~~~~~~~~~l  183 (216)
                      ..-.+...+..++-++++|+.-+      ...+..++..+.   .+..||++||+.+....+ +++.+.+
T Consensus       150 qrv~laral~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~---~~~tii~~sH~~~~~~~~-~d~i~~l  215 (242)
T TIGR03411       150 QWLEIGMLLMQDPKLLLLDEPVAGMTDEETEKTAELLKSLA---GKHSVVVVEHDMEFVRSI-ADKVTVL  215 (242)
T ss_pred             HHHHHHHHHhcCCCEEEecCCccCCCHHHHHHHHHHHHHHh---cCCEEEEEECCHHHHHHh-CCEEEEE
Confidence            34457778888889999998732      233444444433   246899999998776554 3444443

Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.

>PRK13652 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=98.41  E-value=1.5e-06  Score=68.55  Aligned_cols=55  Identities=16%  Similarity=0.219  Sum_probs=35.6

Q ss_pred             hhHHHHHHHhCCceEEEEEeCCCC------HHHHHHhhcCCCCCCCCcEEEEEeCCchhhhc
Q 039455          119 KGINLIRWRLCRKRVLVVLDDVDQ------LEQLQALAGNHDWFGFGSRIIITTRDEHVLKG  174 (216)
Q Consensus       119 ~~~~~l~~~l~~~~~llvlDd~~~------~~~~~~l~~~~~~~~~~~~il~tsr~~~~~~~  174 (216)
                      .....+...+..++-++++|+...      ...+..++..+.. ..+..||++||+.+....
T Consensus       143 ~qrl~laraL~~~p~llilDEPt~gLD~~~~~~l~~~l~~l~~-~~g~tvli~tH~~~~~~~  203 (277)
T PRK13652        143 KKRVAIAGVIAMEPQVLVLDEPTAGLDPQGVKELIDFLNDLPE-TYGMTVIFSTHQLDLVPE  203 (277)
T ss_pred             HHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHH-hcCCEEEEEecCHHHHHH
Confidence            334457888888999999998742      2334444433321 126789999999876544

>PRK14249 phosphate ABC transporter ATP-binding protein; Provisional

Probab=98.41  E-value=2.5e-06  Score=66.30  Aligned_cols=53  Identities=13%  Similarity=0.075  Sum_probs=35.5

Q ss_pred             hHHHHHHHhCCceEEEEEeCCCC------HHHHHHhhcCCCCCCCCcEEEEEeCCchhhhcc
Q 039455          120 GINLIRWRLCRKRVLVVLDDVDQ------LEQLQALAGNHDWFGFGSRIIITTRDEHVLKGH  175 (216)
Q Consensus       120 ~~~~l~~~l~~~~~llvlDd~~~------~~~~~~l~~~~~~~~~~~~il~tsr~~~~~~~~  175 (216)
                      ....+.+.+..++-++++|+...      ...+..++..+.   .+..||++||+.+....+
T Consensus       154 qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~---~~~tilivsh~~~~~~~~  212 (251)
T PRK14249        154 QRLCIARVLAIEPEVILMDEPCSALDPVSTMRIEELMQELK---QNYTIAIVTHNMQQAARA  212 (251)
T ss_pred             HHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHh---cCCEEEEEeCCHHHHHhh
Confidence            34457777888899999998732      233444444432   357899999998776654

>PRK09536 btuD corrinoid ABC transporter ATPase; Reviewed

Probab=98.41  E-value=3.7e-07  Score=75.42  Aligned_cols=56  Identities=13%  Similarity=0.112  Sum_probs=38.6

Q ss_pred             hhhHHHHHHHhCCceEEEEEeCCC------CHHHHHHhhcCCCCCCCCcEEEEEeCCchhhhcc
Q 039455          118 HKGINLIRWRLCRKRVLVVLDDVD------QLEQLQALAGNHDWFGFGSRIIITTRDEHVLKGH  175 (216)
Q Consensus       118 ~~~~~~l~~~l~~~~~llvlDd~~------~~~~~~~l~~~~~~~~~~~~il~tsr~~~~~~~~  175 (216)
                      +.....+.+.+..++-+|+||+.-      ....+..++..+.  ..+..||++||+.+.+..+
T Consensus       144 erQRv~IArAL~~~P~iLLLDEPtsgLD~~~~~~l~~lL~~l~--~~g~TIIivsHdl~~~~~~  205 (402)
T PRK09536        144 ERQRVLLARALAQATPVLLLDEPTASLDINHQVRTLELVRRLV--DDGKTAVAAIHDLDLAARY  205 (402)
T ss_pred             HHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHH--hcCCEEEEEECCHHHHHHh
Confidence            344556888888999999999773      2234555555444  2467899999998776554

>PRK13641 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=98.41  E-value=1.7e-06  Score=68.67  Aligned_cols=54  Identities=13%  Similarity=0.120  Sum_probs=36.6

Q ss_pred             hHHHHHHHhCCceEEEEEeCCC------CHHHHHHhhcCCCCCCCCcEEEEEeCCchhhhcc
Q 039455          120 GINLIRWRLCRKRVLVVLDDVD------QLEQLQALAGNHDWFGFGSRIIITTRDEHVLKGH  175 (216)
Q Consensus       120 ~~~~l~~~l~~~~~llvlDd~~------~~~~~~~l~~~~~~~~~~~~il~tsr~~~~~~~~  175 (216)
                      ....+...+..++-+|++|+..      ....+..++..+.  ..+..||++||+.+.+..+
T Consensus       152 qrl~laral~~~p~lLlLDEPt~gLD~~~~~~l~~~l~~l~--~~g~tvlivsH~~~~~~~~  211 (287)
T PRK13641        152 RRVAIAGVMAYEPEILCLDEPAAGLDPEGRKEMMQLFKDYQ--KAGHTVILVTHNMDDVAEY  211 (287)
T ss_pred             HHHHHHHHHHcCCCEEEEECCCCCCCHHHHHHHHHHHHHHH--hCCCEEEEEeCCHHHHHHh
Confidence            3445777888889999999773      2234444444432  3478899999998776554

>PRK10536 hypothetical protein; Provisional

Probab=98.41  E-value=1.6e-06  Score=66.75  Aligned_cols=44  Identities=16%  Similarity=0.151  Sum_probs=37.5

Q ss_pred             ccccccchhHHHHHHHHHhcCCCCeeEEEEEecCCCcHHHHHHHHHHH
Q 039455           25 VDGLVGIASRMEKMNGYLEAGLDDVRFIGICGMGGIGKTTLAKVLYNT   72 (216)
Q Consensus        25 ~~~~vgR~~~~~~l~~~l~~~~~~~~~i~I~G~~GiGKTtL~~~~~~~   72 (216)
                      ...+.+|+.....+..++...    ..+.++|++|+|||+|+..++..
T Consensus        54 ~~~i~p~n~~Q~~~l~al~~~----~lV~i~G~aGTGKT~La~a~a~~   97 (262)
T PRK10536         54 TSPILARNEAQAHYLKAIESK----QLIFATGEAGCGKTWISAAKAAE   97 (262)
T ss_pred             CccccCCCHHHHHHHHHHhcC----CeEEEECCCCCCHHHHHHHHHHH
Confidence            356788999999998888642    59999999999999999999874

>PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional

Probab=98.41  E-value=1.6e-06  Score=68.13  Aligned_cols=28  Identities=32%  Similarity=0.492  Sum_probs=24.3

Q ss_pred             CCeeEEEEEecCCCcHHHHHHHHHHHhc
Q 039455           47 DDVRFIGICGMGGIGKTTLAKVLYNTLK   74 (216)
Q Consensus        47 ~~~~~i~I~G~~GiGKTtL~~~~~~~~~   74 (216)
                      ..+..++|+|++|+|||||++.+++.+.
T Consensus        31 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~   58 (269)
T PRK11831         31 PRGKITAIMGPSGIGKTTLLRLIGGQIA   58 (269)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence            3468999999999999999999998543

>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional

Probab=98.41  E-value=9.6e-07  Score=75.25  Aligned_cols=56  Identities=16%  Similarity=0.165  Sum_probs=37.7

Q ss_pred             hhhHHHHHHHhCCceEEEEEeCCC------CHHHHHHhhcCCCCCCCCcEEEEEeCCchhhhcc
Q 039455          118 HKGINLIRWRLCRKRVLVVLDDVD------QLEQLQALAGNHDWFGFGSRIIITTRDEHVLKGH  175 (216)
Q Consensus       118 ~~~~~~l~~~l~~~~~llvlDd~~------~~~~~~~l~~~~~~~~~~~~il~tsr~~~~~~~~  175 (216)
                      +.....+...+..++-++++|+.-      ....+..++..+.  ..+..||++||+.+....+
T Consensus       140 ~~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~--~~g~tvii~tH~~~~~~~~  201 (490)
T PRK10938        140 ETRKTLLCQALMSEPDLLILDEPFDGLDVASRQQLAELLASLH--QSGITLVLVLNRFDEIPDF  201 (490)
T ss_pred             HHHHHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHH--hcCCeEEEEeCCHHHHHhh
Confidence            344556788888889999999873      2234444444443  2367899999998765544

>KOG0652 consensus 26S proteasome regulatory complex, ATPase RPT5 [Posttranslational modification, protein turnover, chaperones]

Probab=98.41  E-value=2.2e-05  Score=60.25  Aligned_cols=170  Identities=14%  Similarity=0.196  Sum_probs=97.7

Q ss_pred             CcccccccchhHHHHHHHHHhcC-----------CCCeeEEEEEecCCCcHHHHHHHHHHHhcCCCCceEeecccccccc
Q 039455           23 SAVDGLVGIASRMEKMNGYLEAG-----------LDDVRFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLANVREVSV   91 (216)
Q Consensus        23 ~~~~~~vgR~~~~~~l~~~l~~~-----------~~~~~~i~I~G~~GiGKTtL~~~~~~~~~~~~~~~~~~~~~~~~~~   91 (216)
                      ......=|-+..+++|...+..+           -...+-+..+||+|+|||-+|+..+.+-+..|     +..      
T Consensus       168 E~YsDiGGldkQIqELvEAiVLpmth~ekF~~lgi~pPKGvLmYGPPGTGKTlmARAcAaqT~aTF-----LKL------  236 (424)
T KOG0652|consen  168 EQYSDIGGLDKQIQELVEAIVLPMTHKEKFENLGIRPPKGVLMYGPPGTGKTLMARACAAQTNATF-----LKL------  236 (424)
T ss_pred             ccccccccHHHHHHHHHHHhccccccHHHHHhcCCCCCCceEeeCCCCCcHHHHHHHHHHhccchH-----HHh------
Confidence            34556778889999988765321           12356889999999999999999987654332     110      


Q ss_pred             ccCchHHHHHHHHHHHhhccccccchhhhHHHHHHHhCCceEEEEEeCCCCH-------------H---HHHHhhcCCCC
Q 039455           92 TRGLVPLQEQLLSEVLMERNLIIWDVHKGINLIRWRLCRKRVLVVLDDVDQL-------------E---QLQALAGNHDW  155 (216)
Q Consensus        92 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~llvlDd~~~~-------------~---~~~~l~~~~~~  155 (216)
                            .-.++.. ++...     ...-....+.-.-+..+.+|++|+++..             +   .+-.++..+.-
T Consensus       237 ------AgPQLVQ-MfIGd-----GAkLVRDAFaLAKEkaP~IIFIDElDAIGtKRfDSek~GDREVQRTMLELLNQLDG  304 (424)
T KOG0652|consen  237 ------AGPQLVQ-MFIGD-----GAKLVRDAFALAKEKAPTIIFIDELDAIGTKRFDSEKAGDREVQRTMLELLNQLDG  304 (424)
T ss_pred             ------cchHHHh-hhhcc-----hHHHHHHHHHHhhccCCeEEEEechhhhccccccccccccHHHHHHHHHHHHhhcC
Confidence                  0011211 11111     0111223333344467899999988533             1   12223333321


Q ss_pred             C--CCCcEEEEEeCCchh-----hhccCCcceEEecCCChHHHHHHHhhhhcCCC-CCchhHhhhccc
Q 039455          156 F--GFGSRIIITTRDEHV-----LKGHGVTNIYKVRGLDYVEALQLFHLKVSKGK-QPTDDRVELSKC  215 (216)
Q Consensus       156 ~--~~~~~il~tsr~~~~-----~~~~~~~~~~~l~~l~~~~~~~ll~~~~~~~~-~~~~~~~~l~~~  215 (216)
                      .  ....++|.+|.--++     +..-..+..++++.-+.+....+++-+...-+ .++-.+++|+++
T Consensus       305 Fss~~~vKviAATNRvDiLDPALlRSGRLDRKIEfP~Pne~aRarIlQIHsRKMnv~~DvNfeELaRs  372 (424)
T KOG0652|consen  305 FSSDDRVKVIAATNRVDILDPALLRSGRLDRKIEFPHPNEEARARILQIHSRKMNVSDDVNFEELARS  372 (424)
T ss_pred             CCCccceEEEeecccccccCHHHhhcccccccccCCCCChHHHHHHHHHhhhhcCCCCCCCHHHHhhc
Confidence            1  234577776654333     22223578889887777777777776765544 445578888774

>cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C

Probab=98.40  E-value=5.2e-06  Score=63.25  Aligned_cols=61  Identities=13%  Similarity=0.132  Sum_probs=39.6

Q ss_pred             hhHHHHHHHhCCceEEEEEeCCC------CHHHHHHhhcCCCCCCCCcEEEEEeCCchhhhccCCcceEEec
Q 039455          119 KGINLIRWRLCRKRVLVVLDDVD------QLEQLQALAGNHDWFGFGSRIIITTRDEHVLKGHGVTNIYKVR  184 (216)
Q Consensus       119 ~~~~~l~~~l~~~~~llvlDd~~------~~~~~~~l~~~~~~~~~~~~il~tsr~~~~~~~~~~~~~~~l~  184 (216)
                      ...-.+...+..++-++++|+..      ..+.+..++..+.   .+..||++||+.+....  +++.+.+.
T Consensus       145 ~qr~~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~---~~~tii~~sh~~~~~~~--~d~i~~l~  211 (221)
T cd03244         145 RQLLCLARALLRKSKILVLDEATASVDPETDALIQKTIREAF---KDCTVLTIAHRLDTIID--SDRILVLD  211 (221)
T ss_pred             HHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHhc---CCCEEEEEeCCHHHHhh--CCEEEEEE
Confidence            33445777888889999999873      2233444444432   34679999999877654  45555554

This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.

>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]

Probab=98.40  E-value=1.3e-06  Score=69.99  Aligned_cols=59  Identities=20%  Similarity=0.238  Sum_probs=38.6

Q ss_pred             ccccchhhhHHHHHHHhCCceEEEEEeCCCC-HH---------HHHHhhcCCCCCCCCcEEEEEeCCchhhhcc
Q 039455          112 LIIWDVHKGINLIRWRLCRKRVLVVLDDVDQ-LE---------QLQALAGNHDWFGFGSRIIITTRDEHVLKGH  175 (216)
Q Consensus       112 ~~~~~~~~~~~~l~~~l~~~~~llvlDd~~~-~~---------~~~~l~~~~~~~~~~~~il~tsr~~~~~~~~  175 (216)
                      ...+..+.....+.+.+-.++-++.+|+.-+ ++         .+..+...     -+.++|..||+...+..+
T Consensus       132 ~~LSGGQrQRVAlaRAlVr~P~v~L~DEPlSnLDa~lR~~mr~ei~~lh~~-----l~~T~IYVTHDq~EAmtl  200 (338)
T COG3839         132 LQLSGGQRQRVALARALVRKPKVFLLDEPLSNLDAKLRVLMRSEIKKLHER-----LGTTTIYVTHDQVEAMTL  200 (338)
T ss_pred             ccCChhhHHHHHHHHHHhcCCCEEEecCchhHhhHHHHHHHHHHHHHHHHh-----cCCcEEEEcCCHHHHHhh
Confidence            3444555666678889999999999998743 22         22222222     357889999998655544

>TIGR02142 modC_ABC molybdenum ABC transporter, ATP-binding protein

Probab=98.40  E-value=1.6e-06  Score=70.84  Aligned_cols=56  Identities=14%  Similarity=0.075  Sum_probs=35.4

Q ss_pred             hhHHHHHHHhCCceEEEEEeCCCC------HHHHHHhhcCCCCCCCCcEEEEEeCCchhhhcc
Q 039455          119 KGINLIRWRLCRKRVLVVLDDVDQ------LEQLQALAGNHDWFGFGSRIIITTRDEHVLKGH  175 (216)
Q Consensus       119 ~~~~~l~~~l~~~~~llvlDd~~~------~~~~~~l~~~~~~~~~~~~il~tsr~~~~~~~~  175 (216)
                      ...-.+...+..++-++++|+.-+      ...+..++..+.. ..+..+|++||+.+.+..+
T Consensus       137 kqRvalAraL~~~p~lllLDEPts~LD~~~~~~l~~~L~~l~~-~~g~tiiivtH~~~~~~~~  198 (354)
T TIGR02142       137 KQRVAIGRALLSSPRLLLMDEPLAALDDPRKYEILPYLERLHA-EFGIPILYVSHSLQEVLRL  198 (354)
T ss_pred             HHHHHHHHHHHcCCCEEEEcCCCcCCCHHHHHHHHHHHHHHHH-hcCCEEEEEecCHHHHHHh
Confidence            334467788888899999998732      2333333333321 1257899999998765543

This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter.

>TIGR00968 3a0106s01 sulfate ABC transporter, ATP-binding protein

Probab=98.40  E-value=1.9e-06  Score=66.42  Aligned_cols=27  Identities=22%  Similarity=0.389  Sum_probs=23.9

Q ss_pred             CCeeEEEEEecCCCcHHHHHHHHHHHh
Q 039455           47 DDVRFIGICGMGGIGKTTLAKVLYNTL   73 (216)
Q Consensus        47 ~~~~~i~I~G~~GiGKTtL~~~~~~~~   73 (216)
                      ..+.+++|.|++|+|||||++.+++.+
T Consensus        24 ~~Ge~~~l~G~nGsGKSTLl~~i~G~~   50 (237)
T TIGR00968        24 PTGSLVALLGPSGSGKSTLLRIIAGLE   50 (237)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence            356899999999999999999999854

>TIGR03265 PhnT2 putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein

Probab=98.40  E-value=1.5e-06  Score=70.76  Aligned_cols=58  Identities=17%  Similarity=0.143  Sum_probs=37.0

Q ss_pred             hhhhHHHHHHHhCCceEEEEEeCCCC------HHHHHHhhcCCCCCCCCcEEEEEeCCchhhhcc
Q 039455          117 VHKGINLIRWRLCRKRVLVVLDDVDQ------LEQLQALAGNHDWFGFGSRIIITTRDEHVLKGH  175 (216)
Q Consensus       117 ~~~~~~~l~~~l~~~~~llvlDd~~~------~~~~~~l~~~~~~~~~~~~il~tsr~~~~~~~~  175 (216)
                      .+.....+.+.+..++-++++|+.-+      ...+...+..+.. ..+..+|++||+.+.+..+
T Consensus       138 Gq~QRvaLARaL~~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~-~~~~tvi~vTHd~~ea~~l  201 (353)
T TIGR03265       138 GQQQRVALARALATSPGLLLLDEPLSALDARVREHLRTEIRQLQR-RLGVTTIMVTHDQEEALSM  201 (353)
T ss_pred             HHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHH-hcCCEEEEEcCCHHHHHHh
Confidence            34445568888889999999998732      1333333332210 2367899999998765443

This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely.

>cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E

Probab=98.40  E-value=1.7e-06  Score=66.63  Aligned_cols=59  Identities=14%  Similarity=0.139  Sum_probs=38.9

Q ss_pred             hHHHHHHHhCCceEEEEEeCCCC------HHHHHHhhcCCCCCCCCcEEEEEeCCchhhhccCCcceEEe
Q 039455          120 GINLIRWRLCRKRVLVVLDDVDQ------LEQLQALAGNHDWFGFGSRIIITTRDEHVLKGHGVTNIYKV  183 (216)
Q Consensus       120 ~~~~l~~~l~~~~~llvlDd~~~------~~~~~~l~~~~~~~~~~~~il~tsr~~~~~~~~~~~~~~~l  183 (216)
                      ..-.+...+..++-++++|+..+      ...+..++..+.   .+..||++||+.+....  ++..+.+
T Consensus       145 qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~---~~~tiii~sH~~~~~~~--~d~v~~l  209 (237)
T cd03252         145 QRIAIARALIHNPRILIFDEATSALDYESEHAIMRNMHDIC---AGRTVIIIAHRLSTVKN--ADRIIVM  209 (237)
T ss_pred             HHHHHHHHHhhCCCEEEEeCCcccCCHHHHHHHHHHHHHhc---CCCEEEEEeCCHHHHHh--CCEEEEE
Confidence            34457777788889999998732      234444444443   36789999999987753  4555444

coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy.

>cd01120 RecA-like_NTPases RecA-like NTPases

Probab=98.40  E-value=7.8e-07  Score=64.01  Aligned_cols=34  Identities=29%  Similarity=0.303  Sum_probs=27.3

Q ss_pred             EEEEEecCCCcHHHHHHHHHHHhcCCCCceEeec
Q 039455           51 FIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLA   84 (216)
Q Consensus        51 ~i~I~G~~GiGKTtL~~~~~~~~~~~~~~~~~~~   84 (216)
                      +++|+|++|+|||+++..++......-..+.|++
T Consensus         1 ~~~i~G~~G~GKT~l~~~i~~~~~~~~~~v~~~~   34 (165)
T cd01120           1 LILVFGPTGSGKTTLALQLALNIATKGGKVVYVD   34 (165)
T ss_pred             CeeEeCCCCCCHHHHHHHHHHHHHhcCCEEEEEE
Confidence            3689999999999999999987765545566665

This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.

>PRK10762 D-ribose transporter ATP binding protein; Provisional

Probab=98.39  E-value=1e-06  Score=75.27  Aligned_cols=56  Identities=13%  Similarity=0.120  Sum_probs=37.3

Q ss_pred             hhhHHHHHHHhCCceEEEEEeCCCC------HHHHHHhhcCCCCCCCCcEEEEEeCCchhhhcc
Q 039455          118 HKGINLIRWRLCRKRVLVVLDDVDQ------LEQLQALAGNHDWFGFGSRIIITTRDEHVLKGH  175 (216)
Q Consensus       118 ~~~~~~l~~~l~~~~~llvlDd~~~------~~~~~~l~~~~~~~~~~~~il~tsr~~~~~~~~  175 (216)
                      +.....+...+..++-++++|+.-+      ...+..++..+.  ..+..||++||+.+....+
T Consensus       146 ~~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~--~~~~tvii~sHd~~~~~~~  207 (501)
T PRK10762        146 EQQMVEIAKVLSFESKVIIMDEPTDALTDTETESLFRVIRELK--SQGRGIVYISHRLKEIFEI  207 (501)
T ss_pred             HHHHHHHHHHHhcCCCEEEEeCCcCCCCHHHHHHHHHHHHHHH--HCCCEEEEEeCCHHHHHHh
Confidence            3344567888888999999998732      233444444443  2367899999998766554

>PRK14273 phosphate ABC transporter ATP-binding protein; Provisional

Probab=98.39  E-value=2.2e-06  Score=66.81  Aligned_cols=52  Identities=17%  Similarity=0.125  Sum_probs=35.0

Q ss_pred             HHHHHHHhCCceEEEEEeCCC------CHHHHHHhhcCCCCCCCCcEEEEEeCCchhhhcc
Q 039455          121 INLIRWRLCRKRVLVVLDDVD------QLEQLQALAGNHDWFGFGSRIIITTRDEHVLKGH  175 (216)
Q Consensus       121 ~~~l~~~l~~~~~llvlDd~~------~~~~~~~l~~~~~~~~~~~~il~tsr~~~~~~~~  175 (216)
                      ...+.+.+..++-++++|+.-      ....+..++..+.   .+..+|++||+.+....+
T Consensus       158 rv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~---~~~tvii~sH~~~~~~~~  215 (254)
T PRK14273        158 RLCIARTLAIEPNVILMDEPTSALDPISTGKIEELIINLK---ESYTIIIVTHNMQQAGRI  215 (254)
T ss_pred             HHHHHHHHHcCCCEEEEeCCCcccCHHHHHHHHHHHHHHh---cCCEEEEEeCCHHHHHHh
Confidence            445677777888899999773      2234444444443   257899999998876554

>PRK14272 phosphate ABC transporter ATP-binding protein; Provisional

Probab=98.39  E-value=3.8e-06  Score=65.32  Aligned_cols=59  Identities=15%  Similarity=0.123  Sum_probs=37.8

Q ss_pred             HHHHHHHhCCceEEEEEeCCC------CHHHHHHhhcCCCCCCCCcEEEEEeCCchhhhccCCcceEEe
Q 039455          121 INLIRWRLCRKRVLVVLDDVD------QLEQLQALAGNHDWFGFGSRIIITTRDEHVLKGHGVTNIYKV  183 (216)
Q Consensus       121 ~~~l~~~l~~~~~llvlDd~~------~~~~~~~l~~~~~~~~~~~~il~tsr~~~~~~~~~~~~~~~l  183 (216)
                      .-.+...+..++-++++|+.-      ....+..++..+.   .+..+|++||+.+....+ ++..+.+
T Consensus       156 rv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~---~~~tiii~sH~~~~~~~~-~d~i~~l  220 (252)
T PRK14272        156 RLCIARALAVEPEILLMDEPTSALDPASTARIEDLMTDLK---KVTTIIIVTHNMHQAARV-SDTTSFF  220 (252)
T ss_pred             HHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHh---cCCeEEEEeCCHHHHHHh-CCEEEEE
Confidence            345677777888999999773      2234444444443   247899999998876654 3343333

>cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein

Probab=98.39  E-value=4.9e-06  Score=63.75  Aligned_cols=61  Identities=16%  Similarity=0.208  Sum_probs=40.4

Q ss_pred             hhhHHHHHHHhCCceEEEEEeCCC------CHHHHHHhhcCCCCCCCCcEEEEEeCCchhhhccCCcceEEe
Q 039455          118 HKGINLIRWRLCRKRVLVVLDDVD------QLEQLQALAGNHDWFGFGSRIIITTRDEHVLKGHGVTNIYKV  183 (216)
Q Consensus       118 ~~~~~~l~~~l~~~~~llvlDd~~------~~~~~~~l~~~~~~~~~~~~il~tsr~~~~~~~~~~~~~~~l  183 (216)
                      +...-.+...+..++-++++|+..      +.+.+..++..+.   .+..||++||+......  +++.+.+
T Consensus       144 ~~~rv~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~---~~~tii~~sh~~~~~~~--~d~i~~l  210 (229)
T cd03254         144 ERQLLAIARAMLRDPKILILDEATSNIDTETEKLIQEALEKLM---KGRTSIIIAHRLSTIKN--ADKILVL  210 (229)
T ss_pred             HHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHhc---CCCEEEEEecCHHHHhh--CCEEEEE
Confidence            334446788888899999999873      2234444444442   36789999999877643  5555555

In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1

Probab=98.39  E-value=3.7e-06  Score=64.85  Aligned_cols=60  Identities=15%  Similarity=0.150  Sum_probs=39.8

Q ss_pred             hHHHHHHHhCCceEEEEEeCCC------CHHHHHHhhcCCCCCCCCcEEEEEeCCchhhhccCCcceEEec
Q 039455          120 GINLIRWRLCRKRVLVVLDDVD------QLEQLQALAGNHDWFGFGSRIIITTRDEHVLKGHGVTNIYKVR  184 (216)
Q Consensus       120 ~~~~l~~~l~~~~~llvlDd~~------~~~~~~~l~~~~~~~~~~~~il~tsr~~~~~~~~~~~~~~~l~  184 (216)
                      ....+...+..++-++++|+..      ..+.+..++..+.   .+..+|++||+.+... . +++.+.+.
T Consensus       146 qrv~la~al~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~---~g~~vi~~sh~~~~~~-~-~d~v~~l~  211 (238)
T cd03249         146 QRIAIARALLRNPKILLLDEATSALDAESEKLVQEALDRAM---KGRTTIVIAHRLSTIR-N-ADLIAVLQ  211 (238)
T ss_pred             HHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHhc---CCCEEEEEeCCHHHHh-h-CCEEEEEE
Confidence            3445777778888899999873      2234444444432   4678999999988775 4 56655553

In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another.

>PRK10070 glycine betaine transporter ATP-binding subunit; Provisional

Probab=98.39  E-value=2e-06  Score=71.11  Aligned_cols=57  Identities=9%  Similarity=-0.009  Sum_probs=36.5

Q ss_pred             hhhHHHHHHHhCCceEEEEEeCCCC------HHHHHHhhcCCCCCCCCcEEEEEeCCchhhhcc
Q 039455          118 HKGINLIRWRLCRKRVLVVLDDVDQ------LEQLQALAGNHDWFGFGSRIIITTRDEHVLKGH  175 (216)
Q Consensus       118 ~~~~~~l~~~l~~~~~llvlDd~~~------~~~~~~l~~~~~~~~~~~~il~tsr~~~~~~~~  175 (216)
                      +...-.+...+..++-++++|+.-+      ...+..++..+.. ..+..||++||+.+.+..+
T Consensus       169 q~QRv~LArAL~~~P~iLLLDEPts~LD~~~r~~l~~~L~~l~~-~~g~TIIivTHd~~~~~~~  231 (400)
T PRK10070        169 MRQRVGLARALAINPDILLMDEAFSALDPLIRTEMQDELVKLQA-KHQRTIVFISHDLDEAMRI  231 (400)
T ss_pred             HHHHHHHHHHHhcCCCEEEEECCCccCCHHHHHHHHHHHHHHHH-HCCCeEEEEECCHHHHHHh
Confidence            3334457888888999999998732      2334444433320 2367899999998765543

>TIGR01189 ccmA heme ABC exporter, ATP-binding protein CcmA

Probab=98.39  E-value=2.9e-06  Score=63.54  Aligned_cols=28  Identities=36%  Similarity=0.564  Sum_probs=24.3

Q ss_pred             CCeeEEEEEecCCCcHHHHHHHHHHHhc
Q 039455           47 DDVRFIGICGMGGIGKTTLAKVLYNTLK   74 (216)
Q Consensus        47 ~~~~~i~I~G~~GiGKTtL~~~~~~~~~   74 (216)
                      ..+..++|.|++|+|||||++.+++.+.
T Consensus        24 ~~Ge~~~i~G~nGsGKSTLl~~l~G~~~   51 (198)
T TIGR01189        24 NAGEALQVTGPNGIGKTTLLRILAGLLR   51 (198)
T ss_pred             cCCcEEEEECCCCCCHHHHHHHHhCCCC
Confidence            3468999999999999999999998543

This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c.

>cd03236 ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 of RNase L inhibitor

Probab=98.38  E-value=9e-07  Score=68.93  Aligned_cols=29  Identities=38%  Similarity=0.628  Sum_probs=25.0

Q ss_pred             CCeeEEEEEecCCCcHHHHHHHHHHHhcC
Q 039455           47 DDVRFIGICGMGGIGKTTLAKVLYNTLKD   75 (216)
Q Consensus        47 ~~~~~i~I~G~~GiGKTtL~~~~~~~~~~   75 (216)
                      ..+..++|+|++|+|||||++.+++.+..
T Consensus        24 ~~Ge~~~IvG~nGsGKSTLlk~l~Gl~~p   52 (255)
T cd03236          24 REGQVLGLVGPNGIGKSTALKILAGKLKP   52 (255)
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhCCcCC
Confidence            45689999999999999999999986543

The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.

>TIGR02858 spore_III_AA stage III sporulation protein AA

Probab=98.38  E-value=2.3e-06  Score=66.94  Aligned_cols=115  Identities=21%  Similarity=0.150  Sum_probs=64.4

Q ss_pred             eeEEEEEecCCCcHHHHHHHHHHHhcCCCCceEeeccccccccccCchHHHHHHHHHHH--hhcc-cc---cc-chhhhH
Q 039455           49 VRFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLANVREVSVTRGLVPLQEQLLSEVL--MERN-LI---IW-DVHKGI  121 (216)
Q Consensus        49 ~~~i~I~G~~GiGKTtL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~--~~~~-~~---~~-~~~~~~  121 (216)
                      ...++|.|++|+|||||++.++..+... ...+++. -....   .. +...++.....  .+.. ..   .. ...+..
T Consensus       111 ~~~~~i~g~~g~GKttl~~~l~~~~~~~-~G~i~~~-g~~v~---~~-d~~~ei~~~~~~~~q~~~~~r~~v~~~~~k~~  184 (270)
T TIGR02858       111 VLNTLIISPPQCGKTTLLRDLARILSTG-ISQLGLR-GKKVG---IV-DERSEIAGCVNGVPQHDVGIRTDVLDGCPKAE  184 (270)
T ss_pred             eeEEEEEcCCCCCHHHHHHHHhCccCCC-CceEEEC-CEEee---cc-hhHHHHHHHhcccccccccccccccccchHHH
Confidence            4789999999999999999999877643 2233332 11110   00 00112211110  0000 00   00 111112


Q ss_pred             HHHHHHhCCceEEEEEeCCCCHHHHHHhhcCCCCCCCCcEEEEEeCCchhh
Q 039455          122 NLIRWRLCRKRVLVVLDDVDQLEQLQALAGNHDWFGFGSRIIITTRDEHVL  172 (216)
Q Consensus       122 ~~l~~~l~~~~~llvlDd~~~~~~~~~l~~~~~~~~~~~~il~tsr~~~~~  172 (216)
                      .+..-.....+-++++|++...+.+..+...+.   .|..+|+|+|+..+.
T Consensus       185 ~~~~~i~~~~P~villDE~~~~e~~~~l~~~~~---~G~~vI~ttH~~~~~  232 (270)
T TIGR02858       185 GMMMLIRSMSPDVIVVDEIGREEDVEALLEALH---AGVSIIATAHGRDVE  232 (270)
T ss_pred             HHHHHHHhCCCCEEEEeCCCcHHHHHHHHHHHh---CCCEEEEEechhHHH
Confidence            222223336889999999987777776665543   478899999987553

Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.

>PRK14265 phosphate ABC transporter ATP-binding protein; Provisional

Probab=98.38  E-value=2.4e-06  Score=67.31  Aligned_cols=62  Identities=13%  Similarity=0.028  Sum_probs=41.6

Q ss_pred             hhHHHHHHHhCCceEEEEEeCCC------CHHHHHHhhcCCCCCCCCcEEEEEeCCchhhhccCCcceEEec
Q 039455          119 KGINLIRWRLCRKRVLVVLDDVD------QLEQLQALAGNHDWFGFGSRIIITTRDEHVLKGHGVTNIYKVR  184 (216)
Q Consensus       119 ~~~~~l~~~l~~~~~llvlDd~~------~~~~~~~l~~~~~~~~~~~~il~tsr~~~~~~~~~~~~~~~l~  184 (216)
                      .....+...+..++-++++|+.-      ..+.+..++..+.   .+..||++||+.+....+ ++..+.++
T Consensus       167 ~qrv~LAraL~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~---~~~tiii~sH~~~~~~~~-~d~i~~l~  234 (274)
T PRK14265        167 QQRLCIARAIAMKPDVLLMDEPCSALDPISTRQVEELCLELK---EQYTIIMVTHNMQQASRV-ADWTAFFN  234 (274)
T ss_pred             HHHHHHHHHHhhCCCEEEEeCCcccCCHHHHHHHHHHHHHHh---cCCEEEEEeCCHHHHHHh-CCEEEEEe
Confidence            33445777788889999999773      2244445554443   247899999999877665 55666664

>PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional

Probab=98.37  E-value=3e-06  Score=65.14  Aligned_cols=54  Identities=20%  Similarity=0.235  Sum_probs=35.4

Q ss_pred             HHHHHHHhCCceEEEEEeCCC------CHHHHHHhhcCCCCCCCCcEEEEEeCCchhhhcc
Q 039455          121 INLIRWRLCRKRVLVVLDDVD------QLEQLQALAGNHDWFGFGSRIIITTRDEHVLKGH  175 (216)
Q Consensus       121 ~~~l~~~l~~~~~llvlDd~~------~~~~~~~l~~~~~~~~~~~~il~tsr~~~~~~~~  175 (216)
                      .-.+...+..++-++++|+..      ..+.+..++..+.. ..+..||++||+.+.....
T Consensus       153 rl~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~-~~g~tvii~sH~~~~~~~~  212 (233)
T PRK11629        153 RVAIARALVNNPRLVLADEPTGNLDARNADSIFQLLGELNR-LQGTAFLVVTHDLQLAKRM  212 (233)
T ss_pred             HHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHH-hCCCEEEEEeCCHHHHHhh
Confidence            345777778889999999873      22334444433320 2367899999998876654

>PRK11432 fbpC ferric transporter ATP-binding subunit; Provisional

Probab=98.37  E-value=1.8e-06  Score=70.27  Aligned_cols=58  Identities=10%  Similarity=0.032  Sum_probs=37.0

Q ss_pred             hhhhHHHHHHHhCCceEEEEEeCCCC------HHHHHHhhcCCCCCCCCcEEEEEeCCchhhhcc
Q 039455          117 VHKGINLIRWRLCRKRVLVVLDDVDQ------LEQLQALAGNHDWFGFGSRIIITTRDEHVLKGH  175 (216)
Q Consensus       117 ~~~~~~~l~~~l~~~~~llvlDd~~~------~~~~~~l~~~~~~~~~~~~il~tsr~~~~~~~~  175 (216)
                      .+.....+.+.+..++-++++|+.-+      .+.+...+..+.. ..+..+|++||+.+.+..+
T Consensus       140 Gq~QRVaLARaL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~-~~g~tii~vTHd~~e~~~l  203 (351)
T PRK11432        140 GQQQRVALARALILKPKVLLFDEPLSNLDANLRRSMREKIRELQQ-QFNITSLYVTHDQSEAFAV  203 (351)
T ss_pred             HHHHHHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHH-hcCCEEEEEcCCHHHHHHh
Confidence            34445568888889999999998732      2333333332210 2367899999998765443

>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional

Probab=98.37  E-value=1.2e-06  Score=74.72  Aligned_cols=56  Identities=11%  Similarity=0.128  Sum_probs=37.2

Q ss_pred             hhhHHHHHHHhCCceEEEEEeCCCC------HHHHHHhhcCCCCCCCCcEEEEEeCCchhhhcc
Q 039455          118 HKGINLIRWRLCRKRVLVVLDDVDQ------LEQLQALAGNHDWFGFGSRIIITTRDEHVLKGH  175 (216)
Q Consensus       118 ~~~~~~l~~~l~~~~~llvlDd~~~------~~~~~~l~~~~~~~~~~~~il~tsr~~~~~~~~  175 (216)
                      +...-.+...+..++-++++|+..+      ...+..++..+.  ..+..+|++||+.+....+
T Consensus       139 q~qrv~lA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~--~~g~tvii~tH~~~~~~~~  200 (491)
T PRK10982        139 QMQMIEIAKAFSYNAKIVIMDEPTSSLTEKEVNHLFTIIRKLK--ERGCGIVYISHKMEEIFQL  200 (491)
T ss_pred             HHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHH--hCCCEEEEEecCHHHHHHh
Confidence            3344467888888999999998732      233444444432  3467899999998766544

>CHL00131 ycf16 sulfate ABC transporter protein; Validated

Probab=98.37  E-value=2.7e-06  Score=66.18  Aligned_cols=55  Identities=22%  Similarity=0.129  Sum_probs=36.4

Q ss_pred             hhHHHHHHHhCCceEEEEEeCCCC------HHHHHHhhcCCCCCCCCcEEEEEeCCchhhhcc
Q 039455          119 KGINLIRWRLCRKRVLVVLDDVDQ------LEQLQALAGNHDWFGFGSRIIITTRDEHVLKGH  175 (216)
Q Consensus       119 ~~~~~l~~~l~~~~~llvlDd~~~------~~~~~~l~~~~~~~~~~~~il~tsr~~~~~~~~  175 (216)
                      ...-.+...+..++-++++|+.-.      ...+..++..+.  ..+..||++||+.+.....
T Consensus       157 ~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~--~~g~tii~~tH~~~~~~~~  217 (252)
T CHL00131        157 KKRNEILQMALLDSELAILDETDSGLDIDALKIIAEGINKLM--TSENSIILITHYQRLLDYI  217 (252)
T ss_pred             HHHHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHH--hCCCEEEEEecCHHHHHhh
Confidence            344457788888999999998732      233444443332  2467899999998766543

>PRK10419 nikE nickel transporter ATP-binding protein NikE; Provisional

Probab=98.37  E-value=2.6e-06  Score=66.89  Aligned_cols=57  Identities=16%  Similarity=0.184  Sum_probs=36.6

Q ss_pred             hhhHHHHHHHhCCceEEEEEeCCCC------HHHHHHhhcCCCCCCCCcEEEEEeCCchhhhcc
Q 039455          118 HKGINLIRWRLCRKRVLVVLDDVDQ------LEQLQALAGNHDWFGFGSRIIITTRDEHVLKGH  175 (216)
Q Consensus       118 ~~~~~~l~~~l~~~~~llvlDd~~~------~~~~~~l~~~~~~~~~~~~il~tsr~~~~~~~~  175 (216)
                      +...-.+...+..++-++++|+...      .+.+..++..+.. ..+..+|++||+.+....+
T Consensus       156 e~qrl~laral~~~p~lllLDEPt~~LD~~~~~~~~~~l~~~~~-~~~~tiiivsH~~~~i~~~  218 (268)
T PRK10419        156 QLQRVCLARALAVEPKLLILDEAVSNLDLVLQAGVIRLLKKLQQ-QFGTACLFITHDLRLVERF  218 (268)
T ss_pred             HHHHHHHHHHHhcCCCEEEEeCCCcccCHHHHHHHHHHHHHHHH-HcCcEEEEEECCHHHHHHh
Confidence            3344467888888999999998732      2234444433321 1367899999998776543

>PRK11147 ABC transporter ATPase component; Reviewed

Probab=98.37  E-value=2.8e-06  Score=74.65  Aligned_cols=58  Identities=19%  Similarity=0.323  Sum_probs=39.2

Q ss_pred             hHHHHHHHhCCceEEEEEeCCC------CHHHHHHhhcCCCCCCCCcEEEEEeCCchhhhccCCcceEEe
Q 039455          120 GINLIRWRLCRKRVLVVLDDVD------QLEQLQALAGNHDWFGFGSRIIITTRDEHVLKGHGVTNIYKV  183 (216)
Q Consensus       120 ~~~~l~~~l~~~~~llvlDd~~------~~~~~~~l~~~~~~~~~~~~il~tsr~~~~~~~~~~~~~~~l  183 (216)
                      ..-.+...+..++-+|++|+.-      +.+.+..++..+     +..||++||+.+++..+ ++..+.+
T Consensus       447 qRl~la~al~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~-----~~tvi~vSHd~~~~~~~-~d~i~~l  510 (635)
T PRK11147        447 NRLLLARLFLKPSNLLILDEPTNDLDVETLELLEELLDSY-----QGTVLLVSHDRQFVDNT-VTECWIF  510 (635)
T ss_pred             HHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHhC-----CCeEEEEECCHHHHHHh-cCEEEEE
Confidence            3445777888889999999773      234455555443     34799999999877665 4444444

>cd03283 ABC_MutS-like MutS-like homolog in eukaryotes

Probab=98.37  E-value=6.6e-07  Score=67.08  Aligned_cols=25  Identities=24%  Similarity=0.175  Sum_probs=22.2

Q ss_pred             eeEEEEEecCCCcHHHHHHHHHHHh
Q 039455           49 VRFIGICGMGGIGKTTLAKVLYNTL   73 (216)
Q Consensus        49 ~~~i~I~G~~GiGKTtL~~~~~~~~   73 (216)
                      +.+++|+||+|+|||||++.++...
T Consensus        25 g~~~~ltGpNg~GKSTllr~i~~~~   49 (199)
T cd03283          25 KNGILITGSNMSGKSTFLRTIGVNV   49 (199)
T ss_pred             CcEEEEECCCCCChHHHHHHHHHHH
Confidence            3799999999999999999998743

The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form slid

>PRK06067 flagellar accessory protein FlaH; Validated

Probab=98.36  E-value=2.5e-06  Score=65.63  Aligned_cols=48  Identities=21%  Similarity=0.215  Sum_probs=36.7

Q ss_pred             HHHHHHhcCCCCeeEEEEEecCCCcHHHHHHHHHHHhcCCCCceEeec
Q 039455           37 KMNGYLEAGLDDVRFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLA   84 (216)
Q Consensus        37 ~l~~~l~~~~~~~~~i~I~G~~GiGKTtL~~~~~~~~~~~~~~~~~~~   84 (216)
                      .|...|..+-+.+.++.|+|++|+|||+|+.+++.....+-..+.|++
T Consensus        13 ~LD~~l~gG~~~g~~~~i~G~~GsGKt~l~~~~~~~~~~~g~~~~y~~   60 (234)
T PRK06067         13 ELDRKLGGGIPFPSLILIEGDHGTGKSVLSQQFVYGALKQGKKVYVIT   60 (234)
T ss_pred             HHHHhhCCCCcCCcEEEEECCCCCChHHHHHHHHHHHHhCCCEEEEEE
Confidence            455556556667899999999999999999999765434456677775

>KOG0066 consensus eIF2-interacting protein ABC50 (ABC superfamily) [Translation, ribosomal structure and biogenesis]

Probab=98.36  E-value=2.1e-06  Score=70.25  Aligned_cols=131  Identities=17%  Similarity=0.179  Sum_probs=72.5

Q ss_pred             HHHHHhcCCCCeeEEEEEecCCCcHHHHHHHHHHHhcC--------CCCceEeeccccccccccCchHHHHHHHHHHHh-
Q 039455           38 MNGYLEAGLDDVRFIGICGMGGIGKTTLAKVLYNTLKD--------QFEASSFLANVREVSVTRGLVPLQEQLLSEVLM-  108 (216)
Q Consensus        38 l~~~l~~~~~~~~~i~I~G~~GiGKTtL~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-  108 (216)
                      |...|+.+-+-.+.|+|+||+|+|||||++.+.+.+..        +.-.+-|+.-....  ..........++...+. 
T Consensus       602 LFkkldFGiDmdSRiaIVGPNGVGKSTlLkLL~Gkl~P~~GE~RKnhrL~iG~FdQh~~E--~L~~Eetp~EyLqr~FNl  679 (807)
T KOG0066|consen  602 LFKKLDFGIDMDSRIAIVGPNGVGKSTLLKLLIGKLDPNDGELRKNHRLRIGWFDQHANE--ALNGEETPVEYLQRKFNL  679 (807)
T ss_pred             hhhcccccccccceeEEECCCCccHHHHHHHHhcCCCCCcchhhccceeeeechhhhhHH--hhccccCHHHHHHHhcCC
Confidence            33444444445689999999999999999999986542        12234444311110  01111111111111110 


Q ss_pred             ----------hcc----------ccccchhhhHHHHHHHhCCceEEEEEeCC------CCHHHHHHhhcCCCCCCCCcEE
Q 039455          109 ----------ERN----------LIIWDVHKGINLIRWRLCRKRVLVVLDDV------DQLEQLQALAGNHDWFGFGSRI  162 (216)
Q Consensus       109 ----------~~~----------~~~~~~~~~~~~l~~~l~~~~~llvlDd~------~~~~~~~~l~~~~~~~~~~~~i  162 (216)
                                ...          ...+..+.....+..+.-+.+-+||||+.      .+++.+..-...|.     ..+
T Consensus       680 pyq~ARK~LG~fGL~sHAHTikikdLSGGQKaRValaeLal~~PDvlILDEPTNNLDIESIDALaEAIney~-----GgV  754 (807)
T KOG0066|consen  680 PYQEARKQLGTFGLASHAHTIKIKDLSGGQKARVALAELALGGPDVLILDEPTNNLDIESIDALAEAINEYN-----GGV  754 (807)
T ss_pred             ChHHHHHHhhhhhhhhccceEeeeecCCcchHHHHHHHHhcCCCCEEEecCCCCCcchhhHHHHHHHHHhcc-----CcE
Confidence                      000          11233445566778888889999999955      45555555555543     447


Q ss_pred             EEEeCCchhhhcc
Q 039455          163 IITTRDEHVLKGH  175 (216)
Q Consensus       163 l~tsr~~~~~~~~  175 (216)
                      |+.||+..+...-
T Consensus       755 i~VsHDeRLi~eT  767 (807)
T KOG0066|consen  755 IMVSHDERLIVET  767 (807)
T ss_pred             EEEecccceeeec
Confidence            7788887665443

>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]

Probab=98.36  E-value=6.3e-06  Score=69.58  Aligned_cols=61  Identities=16%  Similarity=0.134  Sum_probs=40.5

Q ss_pred             ccchhhhHHHHHHHhCCceEEEEEeCCCCH------HHHHHhhcCCCCCCCCcEEEEEeCCchhhhcc
Q 039455          114 IWDVHKGINLIRWRLCRKRVLVVLDDVDQL------EQLQALAGNHDWFGFGSRIIITTRDEHVLKGH  175 (216)
Q Consensus       114 ~~~~~~~~~~l~~~l~~~~~llvlDd~~~~------~~~~~l~~~~~~~~~~~~il~tsr~~~~~~~~  175 (216)
                      .+..+.....+.+.+..+|-+||.|+.-+.      .++-+++..+.. .-+..+|+.||+..+...+
T Consensus       430 lSGGQrQRvaIARALa~~P~lli~DEp~SaLDvsvqa~VlnLl~~lq~-e~g~t~lfISHDl~vV~~i  496 (539)
T COG1123         430 LSGGQRQRVAIARALALEPKLLILDEPVSALDVSVQAQVLNLLKDLQE-ELGLTYLFISHDLAVVRYI  496 (539)
T ss_pred             cCcchhHHHHHHHHHhcCCCEEEecCCccccCHHHHHHHHHHHHHHHH-HhCCEEEEEeCCHHHHHhh
Confidence            344455566789999999999999988432      122222222210 2368899999999887765

>PRK13531 regulatory ATPase RavA; Provisional

Probab=98.36  E-value=4.5e-06  Score=69.81  Aligned_cols=48  Identities=19%  Similarity=0.161  Sum_probs=40.7

Q ss_pred             cccccccchhHHHHHHHHHhcCCCCeeEEEEEecCCCcHHHHHHHHHHHhcC
Q 039455           24 AVDGLVGIASRMEKMNGYLEAGLDDVRFIGICGMGGIGKTTLAKVLYNTLKD   75 (216)
Q Consensus        24 ~~~~~vgR~~~~~~l~~~l~~~~~~~~~i~I~G~~GiGKTtL~~~~~~~~~~   75 (216)
                      ....++||++.++.+...+..+    ..+.|.|++|+|||+||+.++.....
T Consensus        18 l~~~i~gre~vI~lll~aalag----~hVLL~GpPGTGKT~LAraLa~~~~~   65 (498)
T PRK13531         18 LEKGLYERSHAIRLCLLAALSG----ESVFLLGPPGIAKSLIARRLKFAFQN   65 (498)
T ss_pred             HhhhccCcHHHHHHHHHHHccC----CCEEEECCCChhHHHHHHHHHHHhcc
Confidence            3556899999999988877643    68999999999999999999987654

>PRK13649 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=98.36  E-value=2.1e-06  Score=67.93  Aligned_cols=53  Identities=19%  Similarity=0.125  Sum_probs=34.9

Q ss_pred             HHHHHHHhCCceEEEEEeCCCC------HHHHHHhhcCCCCCCCCcEEEEEeCCchhhhcc
Q 039455          121 INLIRWRLCRKRVLVVLDDVDQ------LEQLQALAGNHDWFGFGSRIIITTRDEHVLKGH  175 (216)
Q Consensus       121 ~~~l~~~l~~~~~llvlDd~~~------~~~~~~l~~~~~~~~~~~~il~tsr~~~~~~~~  175 (216)
                      .-.+...+..++-++++|+.-+      .+.+..++..+.  ..+..||++||+.+....+
T Consensus       153 rv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~--~~~~tiiivsH~~~~~~~~  211 (280)
T PRK13649        153 RVAIAGILAMEPKILVLDEPTAGLDPKGRKELMTLFKKLH--QSGMTIVLVTHLMDDVANY  211 (280)
T ss_pred             HHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHH--HCCCEEEEEeccHHHHHHh
Confidence            3457777788889999998732      233444443332  2367899999998765543

>cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE)

Probab=98.36  E-value=2.8e-06  Score=65.05  Aligned_cols=62  Identities=16%  Similarity=0.134  Sum_probs=38.9

Q ss_pred             HHHHHHHhCCceEEEEEeCCCC------HHHHHHhhcCCCCCCCCcEEEEEeCCchhhhccCCcceEEec
Q 039455          121 INLIRWRLCRKRVLVVLDDVDQ------LEQLQALAGNHDWFGFGSRIIITTRDEHVLKGHGVTNIYKVR  184 (216)
Q Consensus       121 ~~~l~~~l~~~~~llvlDd~~~------~~~~~~l~~~~~~~~~~~~il~tsr~~~~~~~~~~~~~~~l~  184 (216)
                      .-.+...+..++-++++|+.-+      .+.+..++..+.. ..+..||++||+.+....+ +++.+.+.
T Consensus       153 rv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~-~~~~tii~~sH~~~~~~~~-~d~i~~l~  220 (228)
T cd03257         153 RVAIARALALNPKLLIADEPTSALDVSVQAQILDLLKKLQE-ELGLTLLFITHDLGVVAKI-ADRVAVMY  220 (228)
T ss_pred             HHHHHHHHhcCCCEEEecCCCCCCCHHHHHHHHHHHHHHHH-HcCCEEEEEeCCHHHHHHh-cCeEEEEe
Confidence            3456777778889999998732      2333343333320 1267899999998876654 45555543

The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.

>PRK14269 phosphate ABC transporter ATP-binding protein; Provisional

Probab=98.36  E-value=2.6e-06  Score=66.09  Aligned_cols=62  Identities=16%  Similarity=0.088  Sum_probs=39.1

Q ss_pred             hhhHHHHHHHhCCceEEEEEeCCC------CHHHHHHhhcCCCCCCCCcEEEEEeCCchhhhccCCcceEEe
Q 039455          118 HKGINLIRWRLCRKRVLVVLDDVD------QLEQLQALAGNHDWFGFGSRIIITTRDEHVLKGHGVTNIYKV  183 (216)
Q Consensus       118 ~~~~~~l~~~l~~~~~llvlDd~~------~~~~~~~l~~~~~~~~~~~~il~tsr~~~~~~~~~~~~~~~l  183 (216)
                      +.....+.+.+..++-++++|+..      +...+..++..+.   .+..+|++||+.+....+ ++..+.+
T Consensus       147 ~~qrv~laral~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~---~~~tiii~tH~~~~~~~~-~d~i~~l  214 (246)
T PRK14269        147 QQQRLCIARALAIKPKLLLLDEPTSALDPISSGVIEELLKELS---HNLSMIMVTHNMQQGKRV-ADYTAFF  214 (246)
T ss_pred             HHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHh---CCCEEEEEecCHHHHHhh-CcEEEEE
Confidence            334446788888899999999873      2233444444332   267899999998765543 3343333

>PRK09984 phosphonate/organophosphate ester transporter subunit; Provisional

Probab=98.36  E-value=2.9e-06  Score=66.41  Aligned_cols=55  Identities=9%  Similarity=0.018  Sum_probs=35.4

Q ss_pred             hHHHHHHHhCCceEEEEEeCCCC------HHHHHHhhcCCCCCCCCcEEEEEeCCchhhhcc
Q 039455          120 GINLIRWRLCRKRVLVVLDDVDQ------LEQLQALAGNHDWFGFGSRIIITTRDEHVLKGH  175 (216)
Q Consensus       120 ~~~~l~~~l~~~~~llvlDd~~~------~~~~~~l~~~~~~~~~~~~il~tsr~~~~~~~~  175 (216)
                      ....+...+..++-+|++|+..+      .+.+..++..+.. ..+..||++||+.+....+
T Consensus       159 qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~g~tvii~tH~~~~~~~~  219 (262)
T PRK09984        159 QRVAIARALMQQAKVILADEPIASLDPESARIVMDTLRDINQ-NDGITVVVTLHQVDYALRY  219 (262)
T ss_pred             HHHHHHHHHhcCCCEEEecCccccCCHHHHHHHHHHHHHHHH-hcCCEEEEEeCCHHHHHHh
Confidence            34457777788889999998732      2344444443321 1367899999998765443

>PF04665 Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 This entry contains uncharacterised proteins belonging to the B354L family which include the pox virus A32 protein

Probab=98.36  E-value=3.8e-06  Score=64.27  Aligned_cols=35  Identities=34%  Similarity=0.432  Sum_probs=30.3

Q ss_pred             eEEEEEecCCCcHHHHHHHHHHHhcCCCCceEeec
Q 039455           50 RFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLA   84 (216)
Q Consensus        50 ~~i~I~G~~GiGKTtL~~~~~~~~~~~~~~~~~~~   84 (216)
                      -.++|.|++|+|||+|+..+.......|..+.++.
T Consensus        14 fr~viIG~sGSGKT~li~~lL~~~~~~f~~I~l~t   48 (241)
T PF04665_consen   14 FRMVIIGKSGSGKTTLIKSLLYYLRHKFDHIFLIT   48 (241)
T ss_pred             ceEEEECCCCCCHHHHHHHHHHhhcccCCEEEEEe
Confidence            47899999999999999999998888887776664

This is thought to be an ATPase involved in viral DNA packaging [].

>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family

Probab=98.36  E-value=1.4e-05  Score=72.23  Aligned_cols=49  Identities=20%  Similarity=0.306  Sum_probs=37.8

Q ss_pred             cccccchhHHHHHHHHHhc-------CCCCeeEEEEEecCCCcHHHHHHHHHHHhc
Q 039455           26 DGLVGIASRMEKMNGYLEA-------GLDDVRFIGICGMGGIGKTTLAKVLYNTLK   74 (216)
Q Consensus        26 ~~~vgR~~~~~~l~~~l~~-------~~~~~~~i~I~G~~GiGKTtL~~~~~~~~~   74 (216)
                      ...+|.+..++.+.+.+..       +.....++.++||+|+|||.||+.++..+.
T Consensus       566 ~~v~GQ~~Av~~v~~~i~~~~~gl~~~~~p~~~~lf~Gp~GvGKT~lA~~La~~l~  621 (852)
T TIGR03345       566 ERVIGQDHALEAIAERIRTARAGLEDPRKPLGVFLLVGPSGVGKTETALALAELLY  621 (852)
T ss_pred             CeEcChHHHHHHHHHHHHHHhcCCCCCCCCceEEEEECCCCCCHHHHHHHHHHHHh
Confidence            4678999988888776642       111234789999999999999999998764

Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.

>PRK10851 sulfate/thiosulfate transporter subunit; Provisional

Probab=98.35  E-value=2.5e-06  Score=69.59  Aligned_cols=57  Identities=12%  Similarity=0.055  Sum_probs=37.0

Q ss_pred             hhhHHHHHHHhCCceEEEEEeCCCC------HHHHHHhhcCCCCCCCCcEEEEEeCCchhhhcc
Q 039455          118 HKGINLIRWRLCRKRVLVVLDDVDQ------LEQLQALAGNHDWFGFGSRIIITTRDEHVLKGH  175 (216)
Q Consensus       118 ~~~~~~l~~~l~~~~~llvlDd~~~------~~~~~~l~~~~~~~~~~~~il~tsr~~~~~~~~  175 (216)
                      +.....+.+.+..++-++++|+.-+      ...+..++..+.. ..+..+|++||+.+.+..+
T Consensus       141 q~QRvalArAL~~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~-~~g~tii~vTHd~~ea~~~  203 (353)
T PRK10851        141 QKQRVALARALAVEPQILLLDEPFGALDAQVRKELRRWLRQLHE-ELKFTSVFVTHDQEEAMEV  203 (353)
T ss_pred             HHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHH-hcCCEEEEEeCCHHHHHHh
Confidence            3444568888888999999998732      2333333333321 2367899999998765554

>PRK10253 iron-enterobactin transporter ATP-binding protein; Provisional

Probab=98.35  E-value=3.3e-06  Score=66.25  Aligned_cols=55  Identities=15%  Similarity=0.099  Sum_probs=35.1

Q ss_pred             hHHHHHHHhCCceEEEEEeCCCC------HHHHHHhhcCCCCCCCCcEEEEEeCCchhhhcc
Q 039455          120 GINLIRWRLCRKRVLVVLDDVDQ------LEQLQALAGNHDWFGFGSRIIITTRDEHVLKGH  175 (216)
Q Consensus       120 ~~~~l~~~l~~~~~llvlDd~~~------~~~~~~l~~~~~~~~~~~~il~tsr~~~~~~~~  175 (216)
                      ....+...+..++-++++|+...      .+.+..++..+.. ..+..||++||+......+
T Consensus       150 qrv~laral~~~p~llllDEPt~gLD~~~~~~l~~~L~~l~~-~~~~tiii~tH~~~~~~~~  210 (265)
T PRK10253        150 QRAWIAMVLAQETAIMLLDEPTTWLDISHQIDLLELLSELNR-EKGYTLAAVLHDLNQACRY  210 (265)
T ss_pred             HHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHHH-hcCCEEEEEeCCHHHHHHh
Confidence            34457778888899999998732      2333344433321 1367899999998765443

>PRK13645 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=98.35  E-value=2.4e-06  Score=67.91  Aligned_cols=28  Identities=18%  Similarity=0.322  Sum_probs=24.3

Q ss_pred             CCeeEEEEEecCCCcHHHHHHHHHHHhc
Q 039455           47 DDVRFIGICGMGGIGKTTLAKVLYNTLK   74 (216)
Q Consensus        47 ~~~~~i~I~G~~GiGKTtL~~~~~~~~~   74 (216)
                      ..+.+++|.|++|+|||||++.+++.+.
T Consensus        35 ~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~   62 (289)
T PRK13645         35 KKNKVTCVIGTTGSGKSTMIQLTNGLII   62 (289)
T ss_pred             eCCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence            3457999999999999999999998653

>PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional

Probab=98.35  E-value=3.1e-06  Score=64.74  Aligned_cols=61  Identities=10%  Similarity=0.139  Sum_probs=39.4

Q ss_pred             HHHHHHHhCCceEEEEEeCCC------CHHHHHHhhcCCCCCCCCcEEEEEeCCchhhhccCCcceEEec
Q 039455          121 INLIRWRLCRKRVLVVLDDVD------QLEQLQALAGNHDWFGFGSRIIITTRDEHVLKGHGVTNIYKVR  184 (216)
Q Consensus       121 ~~~l~~~l~~~~~llvlDd~~------~~~~~~~l~~~~~~~~~~~~il~tsr~~~~~~~~~~~~~~~l~  184 (216)
                      .-.+...+..++-++++|+.-      ..+.+..++..+.. ..+..+|++||+.+... . ++..+.+.
T Consensus       145 rv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~~~tvii~sh~~~~~~-~-~d~i~~l~  211 (225)
T PRK10247        145 RISLIRNLQFMPKVLLLDEITSALDESNKHNVNEIIHRYVR-EQNIAVLWVTHDKDEIN-H-ADKVITLQ  211 (225)
T ss_pred             HHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHH-hcCCEEEEEECChHHHH-h-CCEEEEEe
Confidence            345777888889999999773      22333343333221 23678999999988775 3 66666663

>PRK14235 phosphate transporter ATP-binding protein; Provisional

Probab=98.35  E-value=7.4e-06  Score=64.33  Aligned_cols=52  Identities=12%  Similarity=0.091  Sum_probs=34.7

Q ss_pred             HHHHHHHhCCceEEEEEeCCC------CHHHHHHhhcCCCCCCCCcEEEEEeCCchhhhcc
Q 039455          121 INLIRWRLCRKRVLVVLDDVD------QLEQLQALAGNHDWFGFGSRIIITTRDEHVLKGH  175 (216)
Q Consensus       121 ~~~l~~~l~~~~~llvlDd~~------~~~~~~~l~~~~~~~~~~~~il~tsr~~~~~~~~  175 (216)
                      .-.+...+..++-+|++|+.-      ....+..++..+.   .+..||++||+.+....+
T Consensus       171 rv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~l~---~~~tiiivtH~~~~~~~~  228 (267)
T PRK14235        171 RLCIARAIAVSPEVILMDEPCSALDPIATAKVEELIDELR---QNYTIVIVTHSMQQAARV  228 (267)
T ss_pred             HHHHHHHHHcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHh---cCCeEEEEEcCHHHHHhh
Confidence            345777777888999999873      2234444444443   246899999998776554

>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional

Probab=98.35  E-value=1.6e-06  Score=74.12  Aligned_cols=55  Identities=16%  Similarity=0.198  Sum_probs=36.8

Q ss_pred             hhHHHHHHHhCCceEEEEEeCCC------CHHHHHHhhcCCCCCCCCcEEEEEeCCchhhhcc
Q 039455          119 KGINLIRWRLCRKRVLVVLDDVD------QLEQLQALAGNHDWFGFGSRIIITTRDEHVLKGH  175 (216)
Q Consensus       119 ~~~~~l~~~l~~~~~llvlDd~~------~~~~~~~l~~~~~~~~~~~~il~tsr~~~~~~~~  175 (216)
                      ...-.+...+..++-++++|+.-      ....+..++..+.  ..+..||++||+.+....+
T Consensus       146 ~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~--~~g~tiiiitHd~~~~~~~  206 (501)
T PRK11288        146 RQMVEIAKALARNARVIAFDEPTSSLSAREIEQLFRVIRELR--AEGRVILYVSHRMEEIFAL  206 (501)
T ss_pred             HHHHHHHHHHHhCCCEEEEcCCCCCCCHHHHHHHHHHHHHHH--hCCCEEEEEeCCHHHHHHh
Confidence            33445777888889999999873      2234444444433  2467899999998766543

>PRK13646 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=98.35  E-value=2.1e-06  Score=68.04  Aligned_cols=55  Identities=18%  Similarity=0.103  Sum_probs=35.9

Q ss_pred             hHHHHHHHhCCceEEEEEeCCCC------HHHHHHhhcCCCCCCCCcEEEEEeCCchhhhcc
Q 039455          120 GINLIRWRLCRKRVLVVLDDVDQ------LEQLQALAGNHDWFGFGSRIIITTRDEHVLKGH  175 (216)
Q Consensus       120 ~~~~l~~~l~~~~~llvlDd~~~------~~~~~~l~~~~~~~~~~~~il~tsr~~~~~~~~  175 (216)
                      ....+...+..++-++++|+..+      ...+..++..+.. ..+.+||++||+.+.+..+
T Consensus       152 qrv~laraL~~~p~illlDEPt~~LD~~~~~~l~~~l~~l~~-~~g~tvl~vtH~~~~~~~~  212 (286)
T PRK13646        152 RKIAIVSILAMNPDIIVLDEPTAGLDPQSKRQVMRLLKSLQT-DENKTIILVSHDMNEVARY  212 (286)
T ss_pred             HHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHHH-hCCCEEEEEecCHHHHHHh
Confidence            34457788888899999998732      2334444433321 2468999999998765443

>cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient

Probab=98.35  E-value=5.4e-06  Score=63.45  Aligned_cols=60  Identities=12%  Similarity=0.096  Sum_probs=37.7

Q ss_pred             hHHHHHHHhCCceEEEEEeCCCC------HHHHHHhhcCCCCCCCCcEEEEEeCCchhhhccCCcceEEe
Q 039455          120 GINLIRWRLCRKRVLVVLDDVDQ------LEQLQALAGNHDWFGFGSRIIITTRDEHVLKGHGVTNIYKV  183 (216)
Q Consensus       120 ~~~~l~~~l~~~~~llvlDd~~~------~~~~~~l~~~~~~~~~~~~il~tsr~~~~~~~~~~~~~~~l  183 (216)
                      ..-.+...+..++-++++|+.-+      ...+..++..+.  .. ..||++||+.+....+ ++..+.+
T Consensus       148 qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~--~~-~tii~~sH~~~~~~~~-~d~i~~l  213 (227)
T cd03260         148 QRLCLARALANEPEVLLLDEPTSALDPISTAKIEELIAELK--KE-YTIVIVTHNMQQAARV-ADRTAFL  213 (227)
T ss_pred             HHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHh--hC-cEEEEEeccHHHHHHh-CCEEEEE
Confidence            34456777778889999998732      233444444433  23 6799999998766554 3444444

The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).

>PRK09700 D-allose transporter ATP-binding protein; Provisional

Probab=98.35  E-value=1.6e-06  Score=74.34  Aligned_cols=56  Identities=14%  Similarity=0.192  Sum_probs=37.5

Q ss_pred             hhhHHHHHHHhCCceEEEEEeCCCC------HHHHHHhhcCCCCCCCCcEEEEEeCCchhhhcc
Q 039455          118 HKGINLIRWRLCRKRVLVVLDDVDQ------LEQLQALAGNHDWFGFGSRIIITTRDEHVLKGH  175 (216)
Q Consensus       118 ~~~~~~l~~~l~~~~~llvlDd~~~------~~~~~~l~~~~~~~~~~~~il~tsr~~~~~~~~  175 (216)
                      +.....+...+..++-++++|+.-+      ...+..++..+.  ..+..||++||+...+..+
T Consensus       150 ~~qrv~ia~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~--~~g~tiiivsHd~~~~~~~  211 (510)
T PRK09700        150 HKQMLEIAKTLMLDAKVIIMDEPTSSLTNKEVDYLFLIMNQLR--KEGTAIVYISHKLAEIRRI  211 (510)
T ss_pred             HHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHH--hCCCEEEEEeCCHHHHHHh
Confidence            3344467888888999999998732      233444444433  2367899999998776554

>PRK13650 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=98.34  E-value=1.2e-06  Score=69.18  Aligned_cols=54  Identities=15%  Similarity=0.105  Sum_probs=35.2

Q ss_pred             hhHHHHHHHhCCceEEEEEeCCCC------HHHHHHhhcCCCCCCCCcEEEEEeCCchhhh
Q 039455          119 KGINLIRWRLCRKRVLVVLDDVDQ------LEQLQALAGNHDWFGFGSRIIITTRDEHVLK  173 (216)
Q Consensus       119 ~~~~~l~~~l~~~~~llvlDd~~~------~~~~~~l~~~~~~~~~~~~il~tsr~~~~~~  173 (216)
                      .....+...+..++-++++|+...      ...+..++..+.. ..+.+||++||+.+...
T Consensus       146 ~qrv~lAral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~l~~-~~g~tilivtH~~~~~~  205 (279)
T PRK13650        146 KQRVAIAGAVAMRPKIIILDEATSMLDPEGRLELIKTIKGIRD-DYQMTVISITHDLDEVA  205 (279)
T ss_pred             HHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHH-hcCCEEEEEecCHHHHH
Confidence            344467888888999999998742      2333333333321 13688999999987664

>TIGR02902 spore_lonB ATP-dependent protease LonB

Probab=98.34  E-value=3.6e-06  Score=72.18  Aligned_cols=48  Identities=21%  Similarity=0.391  Sum_probs=39.1

Q ss_pred             cccccccchhHHHHHHHHHhcCCCCeeEEEEEecCCCcHHHHHHHHHHHh
Q 039455           24 AVDGLVGIASRMEKMNGYLEAGLDDVRFIGICGMGGIGKTTLAKVLYNTL   73 (216)
Q Consensus        24 ~~~~~vgR~~~~~~l~~~l~~~~~~~~~i~I~G~~GiGKTtL~~~~~~~~   73 (216)
                      .-.+++|.+..++.+...+...  ....+.|+|++|+|||++|+.+.+..
T Consensus        63 ~f~~iiGqs~~i~~l~~al~~~--~~~~vLi~Ge~GtGKt~lAr~i~~~~  110 (531)
T TIGR02902        63 SFDEIIGQEEGIKALKAALCGP--NPQHVIIYGPPGVGKTAAARLVLEEA  110 (531)
T ss_pred             CHHHeeCcHHHHHHHHHHHhCC--CCceEEEECCCCCCHHHHHHHHHHHh
Confidence            3456999999999998776543  34688999999999999999998754

Members of this protein are LonB, a paralog of the ATP-dependent protease La (LonA, TIGR00763). LonB proteins are found strictly, and almost universally, in endospore-forming bacteria. This protease was shown, in Bacillus subtilis, to be expressed specifically in the forespore, during sporulation, under control of sigma(F). The lonB gene, despite location immediately upstream of lonA, was shown to be monocistronic. LonB appears able to act on sigma(H) for post-translation control, but lonB mutation did not produce an obvious sporulation defect under the conditions tested. Note that additional paralogs of LonA and LonB occur in the Clostridium lineage and this model selects only one per species as the protein that corresponds to LonB in B. subtilis.

>PRK15064 ABC transporter ATP-binding protein; Provisional

Probab=98.34  E-value=2.9e-06  Score=73.00  Aligned_cols=132  Identities=20%  Similarity=0.267  Sum_probs=71.1

Q ss_pred             CCeeEEEEEecCCCcHHHHHHHHHHHhcCCCCce--------Eeeccccc--cccccCchH-------------HHHHHH
Q 039455           47 DDVRFIGICGMGGIGKTTLAKVLYNTLKDQFEAS--------SFLANVRE--VSVTRGLVP-------------LQEQLL  103 (216)
Q Consensus        47 ~~~~~i~I~G~~GiGKTtL~~~~~~~~~~~~~~~--------~~~~~~~~--~~~~~~~~~-------------~~~~l~  103 (216)
                      ..+..++|.|++|+|||||++.+++........+        .++.-...  ......+..             ....++
T Consensus       343 ~~Ge~~~l~G~NGsGKSTLl~~i~G~~~p~~G~i~~~~~~~i~~~~q~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~l  422 (530)
T PRK15064        343 EAGERLAIIGENGVGKTTLLRTLVGELEPDSGTVKWSENANIGYYAQDHAYDFENDLTLFDWMSQWRQEGDDEQAVRGTL  422 (530)
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCceEEEEEcccccccCCCCCcHHHHHHHhccCCccHHHHHHHH
Confidence            3567999999999999999999998643321111        11110000  000001111             011122


Q ss_pred             HHHHh------hccccccchhhhHHHHHHHhCCceEEEEEeCCC------CHHHHHHhhcCCCCCCCCcEEEEEeCCchh
Q 039455          104 SEVLM------ERNLIIWDVHKGINLIRWRLCRKRVLVVLDDVD------QLEQLQALAGNHDWFGFGSRIIITTRDEHV  171 (216)
Q Consensus       104 ~~~~~------~~~~~~~~~~~~~~~l~~~l~~~~~llvlDd~~------~~~~~~~l~~~~~~~~~~~~il~tsr~~~~  171 (216)
                      ..+..      ......+..+...-.+...+..++-++++|+.-      ..+.+..++..+     +..||++||+.+.
T Consensus       423 ~~~~l~~~~~~~~~~~LSgGq~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~-----~~tvi~vsHd~~~  497 (530)
T PRK15064        423 GRLLFSQDDIKKSVKVLSGGEKGRMLFGKLMMQKPNVLVMDEPTNHMDMESIESLNMALEKY-----EGTLIFVSHDREF  497 (530)
T ss_pred             HHcCCChhHhcCcccccCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHHC-----CCEEEEEeCCHHH
Confidence            22110      000111223334446788888899999999873      223444444443     2479999999987


Q ss_pred             hhccCCcceEEec
Q 039455          172 LKGHGVTNIYKVR  184 (216)
Q Consensus       172 ~~~~~~~~~~~l~  184 (216)
                      +..+ ++..+.+.
T Consensus       498 ~~~~-~d~i~~l~  509 (530)
T PRK15064        498 VSSL-ATRIIEIT  509 (530)
T ss_pred             HHHh-CCEEEEEE
Confidence            7765 45555553

>TIGR00767 rho transcription termination factor Rho

Probab=98.34  E-value=1e-06  Score=71.83  Aligned_cols=95  Identities=17%  Similarity=0.107  Sum_probs=55.9

Q ss_pred             CCeeEEEEEecCCCcHHHHHHHHHHHhcCC-CCceEeeccccccccccCchHHHHHHHHHHHhhccccccch-----hhh
Q 039455           47 DDVRFIGICGMGGIGKTTLAKVLYNTLKDQ-FEASSFLANVREVSVTRGLVPLQEQLLSEVLMERNLIIWDV-----HKG  120 (216)
Q Consensus        47 ~~~~~i~I~G~~GiGKTtL~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~-----~~~  120 (216)
                      ..+..++|+|++|+|||||++.+++.+... |....|+...+.-  ...+.++...+...+...........     ...
T Consensus       166 g~Gq~~~IvG~~g~GKTtL~~~i~~~I~~nhfdv~v~VlLIgER--~~EVtDLqrsIlg~Vvast~d~p~~~~~~va~~v  243 (415)
T TIGR00767       166 GKGQRGLIVAPPKAGKTVLLQKIAQAITRNHPEVELIVLLIDER--PEEVTDMQRSVKGEVVASTFDEPASRHVQVAEMV  243 (415)
T ss_pred             CCCCEEEEECCCCCChhHHHHHHHHhhcccCCceEEEEEEcCCC--CccHHHHHHHhhceEEEecCCCChHHHHHHHHHH
Confidence            356789999999999999999999977655 7777787644321  23455555555332211111100000     111


Q ss_pred             HHHHHHH-hCCceEEEEEeCCCCH
Q 039455          121 INLIRWR-LCRKRVLVVLDDVDQL  143 (216)
Q Consensus       121 ~~~l~~~-l~~~~~llvlDd~~~~  143 (216)
                      .+..... ..+++.+|++|++...
T Consensus       244 ~e~Ae~~~~~GkdVVLlIDEitR~  267 (415)
T TIGR00767       244 IEKAKRLVEHKKDVVILLDSITRL  267 (415)
T ss_pred             HHHHHHHHHcCCCeEEEEEChhHH
Confidence            1112222 2468999999998533

Members of this family differ in the specificity of RNA binding.

>PRK14267 phosphate ABC transporter ATP-binding protein; Provisional

Probab=98.34  E-value=5.4e-06  Score=64.54  Aligned_cols=28  Identities=25%  Similarity=0.414  Sum_probs=24.6

Q ss_pred             CCeeEEEEEecCCCcHHHHHHHHHHHhc
Q 039455           47 DDVRFIGICGMGGIGKTTLAKVLYNTLK   74 (216)
Q Consensus        47 ~~~~~i~I~G~~GiGKTtL~~~~~~~~~   74 (216)
                      ..+.+++|.|++|+|||||++.+++.+.
T Consensus        28 ~~Ge~~~l~G~nGsGKSTLl~~l~G~~~   55 (253)
T PRK14267         28 PQNGVFALMGPSGCGKSTLLRTFNRLLE   55 (253)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhccCC
Confidence            3468999999999999999999998654

>PRK14275 phosphate ABC transporter ATP-binding protein; Provisional

Probab=98.33  E-value=3.3e-06  Score=66.96  Aligned_cols=60  Identities=12%  Similarity=0.063  Sum_probs=38.3

Q ss_pred             hHHHHHHHhCCceEEEEEeCCC------CHHHHHHhhcCCCCCCCCcEEEEEeCCchhhhccCCcceEEe
Q 039455          120 GINLIRWRLCRKRVLVVLDDVD------QLEQLQALAGNHDWFGFGSRIIITTRDEHVLKGHGVTNIYKV  183 (216)
Q Consensus       120 ~~~~l~~~l~~~~~llvlDd~~------~~~~~~~l~~~~~~~~~~~~il~tsr~~~~~~~~~~~~~~~l  183 (216)
                      ....+...+..++-++++|+.-      ....+..++..+.   .+..||++||+.+....+ +++.+.+
T Consensus       189 qrv~LAraL~~~p~lllLDEPt~gLD~~~~~~l~~~L~~~~---~~~tvIivsH~~~~~~~~-~d~i~~L  254 (286)
T PRK14275        189 QRLCVARTLAVEPEILLLDEPTSALDPKATAKIEDLIQELR---GSYTIMIVTHNMQQASRV-SDYTMFF  254 (286)
T ss_pred             HHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHh---cCCeEEEEeCCHHHHHHh-CCEEEEE
Confidence            3445777888888999999873      2233444444333   246799999998776554 3444444

>KOG0731 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]

Probab=98.33  E-value=1.1e-05  Score=70.52  Aligned_cols=156  Identities=15%  Similarity=0.223  Sum_probs=92.9

Q ss_pred             ccccccchhHHHHHHHHHh---cC-------CCCeeEEEEEecCCCcHHHHHHHHHHHhcCCCCceEeeccccccccccC
Q 039455           25 VDGLVGIASRMEKMNGYLE---AG-------LDDVRFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLANVREVSVTRG   94 (216)
Q Consensus        25 ~~~~vgR~~~~~~l~~~l~---~~-------~~~~~~i~I~G~~GiGKTtL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   94 (216)
                      =+++.|-++..++|.+++.   .+       -.-++-+.|+||+|+|||-||++++.+.     .+.|++..++      
T Consensus       310 FkDVAG~deAK~El~E~V~fLKNP~~Y~~lGAKiPkGvLL~GPPGTGKTLLAKAiAGEA-----gVPF~svSGS------  378 (774)
T KOG0731|consen  310 FKDVAGVDEAKEELMEFVKFLKNPEQYQELGAKIPKGVLLVGPPGTGKTLLAKAIAGEA-----GVPFFSVSGS------  378 (774)
T ss_pred             cccccCcHHHHHHHHHHHHHhcCHHHHHHcCCcCcCceEEECCCCCcHHHHHHHHhccc-----CCceeeechH------
Confidence            3567888877777766543   22       1225789999999999999999999864     3555543222      


Q ss_pred             chHHHHHHHHHHHhhccccccchhhhHHHHHHHhCCceEEEEEeCCCCH-----------------HHHHHhhcCCCCCC
Q 039455           95 LVPLQEQLLSEVLMERNLIIWDVHKGINLIRWRLCRKRVLVVLDDVDQL-----------------EQLQALAGNHDWFG  157 (216)
Q Consensus        95 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~llvlDd~~~~-----------------~~~~~l~~~~~~~~  157 (216)
                            ++...+.+.      ........+...-...|+++.+|+++..                 .-+.+++..+.-+.
T Consensus       379 ------EFvE~~~g~------~asrvr~lf~~ar~~aP~iifideida~~~~r~G~~~~~~~~e~e~tlnQll~emDgf~  446 (774)
T KOG0731|consen  379 ------EFVEMFVGV------GASRVRDLFPLARKNAPSIIFIDEIDAVGRKRGGKGTGGGQDEREQTLNQLLVEMDGFE  446 (774)
T ss_pred             ------HHHHHhccc------chHHHHHHHHHhhccCCeEEEecccccccccccccccCCCChHHHHHHHHHHHHhcCCc
Confidence                  111111111      0112233344444567899999988533                 22455554443222


Q ss_pred             --CCcEEEEEeCCchhhhcc-----CCcceEEecCCChHHHHHHHhhhhcCCC
Q 039455          158 --FGSRIIITTRDEHVLKGH-----GVTNIYKVRGLDYVEALQLFHLKVSKGK  203 (216)
Q Consensus       158 --~~~~il~tsr~~~~~~~~-----~~~~~~~l~~l~~~~~~~ll~~~~~~~~  203 (216)
                        .+.-++-+|+.++.++..     .-+..+.+..-+.....++|..++..-.
T Consensus       447 ~~~~vi~~a~tnr~d~ld~allrpGRfdr~i~i~~p~~~~r~~i~~~h~~~~~  499 (774)
T KOG0731|consen  447 TSKGVIVLAATNRPDILDPALLRPGRFDRQIQIDLPDVKGRASILKVHLRKKK  499 (774)
T ss_pred             CCCcEEEEeccCCccccCHHhcCCCccccceeccCCchhhhHHHHHHHhhccC
Confidence              223334455554443321     2467888988888999999998886544

>cd03278 ABC_SMC_barmotin Barmotin is a tight junction-associated protein expressed in rat epithelial cells which is thought to have an important regulatory role in tight junction barrier function

Probab=98.33  E-value=3.4e-06  Score=63.18  Aligned_cols=22  Identities=23%  Similarity=0.412  Sum_probs=20.2

Q ss_pred             EEEEEecCCCcHHHHHHHHHHH
Q 039455           51 FIGICGMGGIGKTTLAKVLYNT   72 (216)
Q Consensus        51 ~i~I~G~~GiGKTtL~~~~~~~   72 (216)
                      .++|+|++|+|||||++.++..
T Consensus        24 ~~~i~G~nGsGKStll~al~~l   45 (197)
T cd03278          24 LTAIVGPNGSGKSNIIDAIRWV   45 (197)
T ss_pred             cEEEECCCCCCHHHHHHHHHHH
Confidence            8899999999999999998754

Barmotin belongs to the SMC protein family. SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, w

>cd03299 ABC_ModC_like Archeal protein closely related to ModC

Probab=98.33  E-value=4e-06  Score=64.57  Aligned_cols=63  Identities=16%  Similarity=0.101  Sum_probs=38.4

Q ss_pred             hhHHHHHHHhCCceEEEEEeCCC------CHHHHHHhhcCCCCCCCCcEEEEEeCCchhhhccCCcceEEe
Q 039455          119 KGINLIRWRLCRKRVLVVLDDVD------QLEQLQALAGNHDWFGFGSRIIITTRDEHVLKGHGVTNIYKV  183 (216)
Q Consensus       119 ~~~~~l~~~l~~~~~llvlDd~~------~~~~~~~l~~~~~~~~~~~~il~tsr~~~~~~~~~~~~~~~l  183 (216)
                      ...-.+...+..++-++++|+..      +.+.+..++..+.. ..+..+|++||+......+ +++.+.+
T Consensus       135 ~qrl~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~~~~-~~~~tili~tH~~~~~~~~-~d~i~~l  203 (235)
T cd03299         135 QQRVAIARALVVNPKILLLDEPFSALDVRTKEKLREELKKIRK-EFGVTVLHVTHDFEEAWAL-ADKVAIM  203 (235)
T ss_pred             HHHHHHHHHHHcCCCEEEECCCcccCCHHHHHHHHHHHHHHHH-hcCCEEEEEecCHHHHHHh-CCEEEEE
Confidence            33445777888888999999773      22333343333321 2367899999998765543 3344333

ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK11701 phnK phosphonate C-P lyase system protein PhnK; Provisional

Probab=98.33  E-value=2.9e-06  Score=66.26  Aligned_cols=55  Identities=22%  Similarity=0.162  Sum_probs=35.6

Q ss_pred             hHHHHHHHhCCceEEEEEeCCCC------HHHHHHhhcCCCCCCCCcEEEEEeCCchhhhcc
Q 039455          120 GINLIRWRLCRKRVLVVLDDVDQ------LEQLQALAGNHDWFGFGSRIIITTRDEHVLKGH  175 (216)
Q Consensus       120 ~~~~l~~~l~~~~~llvlDd~~~------~~~~~~l~~~~~~~~~~~~il~tsr~~~~~~~~  175 (216)
                      ....+...+..++-++++|+..+      ...+..++..+.. ..+..||++||+.+....+
T Consensus       158 qrl~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~~~tii~isH~~~~~~~~  218 (258)
T PRK11701        158 QRLQIARNLVTHPRLVFMDEPTGGLDVSVQARLLDLLRGLVR-ELGLAVVIVTHDLAVARLL  218 (258)
T ss_pred             HHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHH-hcCcEEEEEeCCHHHHHHh
Confidence            34457778888999999998732      2333333333221 2367899999998876653

>PRK14242 phosphate transporter ATP-binding protein; Provisional

Probab=98.33  E-value=4.5e-06  Score=64.99  Aligned_cols=59  Identities=14%  Similarity=0.070  Sum_probs=37.4

Q ss_pred             HHHHHHHhCCceEEEEEeCCC------CHHHHHHhhcCCCCCCCCcEEEEEeCCchhhhccCCcceEEe
Q 039455          121 INLIRWRLCRKRVLVVLDDVD------QLEQLQALAGNHDWFGFGSRIIITTRDEHVLKGHGVTNIYKV  183 (216)
Q Consensus       121 ~~~l~~~l~~~~~llvlDd~~------~~~~~~~l~~~~~~~~~~~~il~tsr~~~~~~~~~~~~~~~l  183 (216)
                      .-.+...+..++-++++|+.-      ....+..++..+.   .+..||++||+.+....+ +++.+.+
T Consensus       157 rv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~---~~~tvii~tH~~~~~~~~-~d~v~~l  221 (253)
T PRK14242        157 RLCIARALAVEPEVLLMDEPASALDPIATQKIEELIHELK---ARYTIIIVTHNMQQAARV-SDVTAFF  221 (253)
T ss_pred             HHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHh---cCCeEEEEEecHHHHHHh-CCEEEEE
Confidence            345677777888999999773      2234444444442   256899999998766544 3444333

>PRK14262 phosphate ABC transporter ATP-binding protein; Provisional

Probab=98.33  E-value=4.9e-06  Score=64.65  Aligned_cols=52  Identities=15%  Similarity=0.114  Sum_probs=34.6

Q ss_pred             HHHHHHHhCCceEEEEEeCCC------CHHHHHHhhcCCCCCCCCcEEEEEeCCchhhhcc
Q 039455          121 INLIRWRLCRKRVLVVLDDVD------QLEQLQALAGNHDWFGFGSRIIITTRDEHVLKGH  175 (216)
Q Consensus       121 ~~~l~~~l~~~~~llvlDd~~------~~~~~~~l~~~~~~~~~~~~il~tsr~~~~~~~~  175 (216)
                      ...+...+..++-++++|+..      +...+..++..+.   .+..+|++||+.+....+
T Consensus       154 r~~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~---~~~tili~sH~~~~~~~~  211 (250)
T PRK14262        154 RLCIARALAVEPEVILLDEPTSALDPIATQRIEKLLEELS---ENYTIVIVTHNIGQAIRI  211 (250)
T ss_pred             HHHHHHHHhCCCCEEEEeCCccccCHHHHHHHHHHHHHHh---cCcEEEEEeCCHHHHHHh
Confidence            445677777888999999873      2234444444443   246899999998765443

>COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=98.33  E-value=1.8e-06  Score=64.11  Aligned_cols=49  Identities=16%  Similarity=0.169  Sum_probs=35.9

Q ss_pred             HHHHhCCceEEEEEeCCC------CHHHHHHhhcCCCCCCCCcEEEEEeCCchhhhcc
Q 039455          124 IRWRLCRKRVLVVLDDVD------QLEQLQALAGNHDWFGFGSRIIITTRDEHVLKGH  175 (216)
Q Consensus       124 l~~~l~~~~~llvlDd~~------~~~~~~~l~~~~~~~~~~~~il~tsr~~~~~~~~  175 (216)
                      +++.++-+|-+|++|+.-      +...++.+...+.   ...+|++.||+..-+.+.
T Consensus       160 IARalAv~PeVlLmDEPtSALDPIsT~kIEeLi~eLk---~~yTIviVTHnmqQAaRv  214 (253)
T COG1117         160 IARALAVKPEVLLMDEPTSALDPISTLKIEELITELK---KKYTIVIVTHNMQQAARV  214 (253)
T ss_pred             HHHHHhcCCcEEEecCcccccCchhHHHHHHHHHHHH---hccEEEEEeCCHHHHHHH
Confidence            677888899999999773      3345666666554   567899999988665554

>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional

Probab=98.33  E-value=2.7e-06  Score=72.84  Aligned_cols=55  Identities=13%  Similarity=0.121  Sum_probs=37.9

Q ss_pred             hhHHHHHHHhCCceEEEEEeCCC------CHHHHHHhhcCCCCCCCCcEEEEEeCCchhhhcc
Q 039455          119 KGINLIRWRLCRKRVLVVLDDVD------QLEQLQALAGNHDWFGFGSRIIITTRDEHVLKGH  175 (216)
Q Consensus       119 ~~~~~l~~~l~~~~~llvlDd~~------~~~~~~~l~~~~~~~~~~~~il~tsr~~~~~~~~  175 (216)
                      ...-.+...+..++-+|++|+.-      ....+..++..+.  ..+..||++||+.+.+..+
T Consensus       409 kqrl~la~al~~~p~lLlLDEPt~gLD~~~~~~l~~~l~~l~--~~g~tiIivsHd~~~i~~~  469 (510)
T PRK15439        409 QQKVLIAKCLEASPQLLIVDEPTRGVDVSARNDIYQLIRSIA--AQNVAVLFISSDLEEIEQM  469 (510)
T ss_pred             HHHHHHHHHHhhCCCEEEECCCCcCcChhHHHHHHHHHHHHH--hCCCEEEEECCCHHHHHHh
Confidence            33445777888888999999762      3345555554443  2367899999998876654

>PRK10744 pstB phosphate transporter ATP-binding protein; Provisional

Probab=98.33  E-value=4.6e-06  Score=65.19  Aligned_cols=53  Identities=11%  Similarity=0.102  Sum_probs=34.9

Q ss_pred             hHHHHHHHhCCceEEEEEeCCCC------HHHHHHhhcCCCCCCCCcEEEEEeCCchhhhcc
Q 039455          120 GINLIRWRLCRKRVLVVLDDVDQ------LEQLQALAGNHDWFGFGSRIIITTRDEHVLKGH  175 (216)
Q Consensus       120 ~~~~l~~~l~~~~~llvlDd~~~------~~~~~~l~~~~~~~~~~~~il~tsr~~~~~~~~  175 (216)
                      ..-.+...+..++-++++|+.-+      ...+..++..+.   .+..||++||+.+....+
T Consensus       163 qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~---~~~tiii~sH~~~~~~~~  221 (260)
T PRK10744        163 QRLCIARGIAIRPEVLLLDEPCSALDPISTGRIEELITELK---QDYTVVIVTHNMQQAARC  221 (260)
T ss_pred             HHHHHHHHHHCCCCEEEEcCCCccCCHHHHHHHHHHHHHHh---cCCeEEEEeCCHHHHHHh
Confidence            34457778888899999998732      233444444332   246799999998765543

>CHL00095 clpC Clp protease ATP binding subunit

Probab=98.33  E-value=2.8e-05  Score=70.25  Aligned_cols=50  Identities=18%  Similarity=0.234  Sum_probs=38.3

Q ss_pred             ccccccchhHHHHHHHHHhcC-------CCCeeEEEEEecCCCcHHHHHHHHHHHhc
Q 039455           25 VDGLVGIASRMEKMNGYLEAG-------LDDVRFIGICGMGGIGKTTLAKVLYNTLK   74 (216)
Q Consensus        25 ~~~~vgR~~~~~~l~~~l~~~-------~~~~~~i~I~G~~GiGKTtL~~~~~~~~~   74 (216)
                      ...++|.+..++.+...+...       ......+.++||+|+|||+||+.++..+.
T Consensus       508 ~~~v~GQ~~ai~~l~~~i~~~~~gl~~~~~p~~~~lf~Gp~GvGKt~lA~~LA~~l~  564 (821)
T CHL00095        508 HKRIIGQDEAVVAVSKAIRRARVGLKNPNRPIASFLFSGPTGVGKTELTKALASYFF  564 (821)
T ss_pred             cCcCcChHHHHHHHHHHHHHHhhcccCCCCCceEEEEECCCCCcHHHHHHHHHHHhc
Confidence            356889999999987766411       11124678999999999999999998764

>PRK13631 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=98.32  E-value=3.9e-06  Score=67.58  Aligned_cols=54  Identities=11%  Similarity=0.086  Sum_probs=35.7

Q ss_pred             hhHHHHHHHhCCceEEEEEeCCCC------HHHHHHhhcCCCCCCCCcEEEEEeCCchhhhc
Q 039455          119 KGINLIRWRLCRKRVLVVLDDVDQ------LEQLQALAGNHDWFGFGSRIIITTRDEHVLKG  174 (216)
Q Consensus       119 ~~~~~l~~~l~~~~~llvlDd~~~------~~~~~~l~~~~~~~~~~~~il~tsr~~~~~~~  174 (216)
                      .....+...+..++-+|++|+.-+      ...+..++..+.  ..+.+||++||+.+....
T Consensus       182 kqRvaiAraL~~~p~iLLLDEPtsgLD~~~~~~l~~~L~~l~--~~g~TiiivtHd~~~~~~  241 (320)
T PRK13631        182 KRRVAIAGILAIQPEILIFDEPTAGLDPKGEHEMMQLILDAK--ANNKTVFVITHTMEHVLE  241 (320)
T ss_pred             HHHHHHHHHHHcCCCEEEEECCccCCCHHHHHHHHHHHHHHH--HCCCEEEEEecCHHHHHH
Confidence            344467888888999999998732      233444443332  246789999999875443

>TIGR02974 phageshock_pspF psp operon transcriptional activator PspF

Probab=98.32  E-value=4e-06  Score=67.71  Aligned_cols=46  Identities=22%  Similarity=0.125  Sum_probs=37.4

Q ss_pred             cccchhHHHHHHHHHhcCCCCeeEEEEEecCCCcHHHHHHHHHHHh
Q 039455           28 LVGIASRMEKMNGYLEAGLDDVRFIGICGMGGIGKTTLAKVLYNTL   73 (216)
Q Consensus        28 ~vgR~~~~~~l~~~l~~~~~~~~~i~I~G~~GiGKTtL~~~~~~~~   73 (216)
                      ++|++..++.+.+.+..-......|.|+|++|+||+++|+.+....
T Consensus         1 liG~S~~m~~~~~~~~~~a~~~~pVLI~GE~GtGK~~lAr~iH~~s   46 (329)
T TIGR02974         1 LIGESNAFLEVLEQVSRLAPLDRPVLIIGERGTGKELIAARLHYLS   46 (329)
T ss_pred             CCcCCHHHHHHHHHHHHHhCCCCCEEEECCCCChHHHHHHHHHHhc
Confidence            4788888888888776544456789999999999999999887643

Members of this protein family are PspF, the sigma-54-dependent transcriptional activator of the phage shock protein (psp) operon, in Escherichia coli and numerous other species. The psp operon is induced by a number of stress conditions, including heat shock, ethanol, and filamentous phage infection. Changed com_name to adhere to TIGR role notes conventions. 09/15/06 - DMH

>PRK13644 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=98.32  E-value=2e-06  Score=67.80  Aligned_cols=60  Identities=13%  Similarity=0.072  Sum_probs=38.3

Q ss_pred             hHHHHHHHhCCceEEEEEeCCC------CHHHHHHhhcCCCCCCCCcEEEEEeCCchhhhccCCcceEEe
Q 039455          120 GINLIRWRLCRKRVLVVLDDVD------QLEQLQALAGNHDWFGFGSRIIITTRDEHVLKGHGVTNIYKV  183 (216)
Q Consensus       120 ~~~~l~~~l~~~~~llvlDd~~------~~~~~~~l~~~~~~~~~~~~il~tsr~~~~~~~~~~~~~~~l  183 (216)
                      ....+...+..++-++++|+.-      +...+..++..+.  ..+..||++||+.+....  +++.+.+
T Consensus       143 qrv~laral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~l~--~~g~til~~tH~~~~~~~--~d~v~~l  208 (274)
T PRK13644        143 QCVALAGILTMEPECLIFDEVTSMLDPDSGIAVLERIKKLH--EKGKTIVYITHNLEELHD--ADRIIVM  208 (274)
T ss_pred             HHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHH--hCCCEEEEEecCHHHHhh--CCEEEEE
Confidence            3445777888899999999873      2233444443333  247889999999877643  4444333

>PRK14261 phosphate ABC transporter ATP-binding protein; Provisional

Probab=98.32  E-value=4.8e-06  Score=64.84  Aligned_cols=60  Identities=12%  Similarity=0.047  Sum_probs=37.8

Q ss_pred             hHHHHHHHhCCceEEEEEeCCC------CHHHHHHhhcCCCCCCCCcEEEEEeCCchhhhccCCcceEEe
Q 039455          120 GINLIRWRLCRKRVLVVLDDVD------QLEQLQALAGNHDWFGFGSRIIITTRDEHVLKGHGVTNIYKV  183 (216)
Q Consensus       120 ~~~~l~~~l~~~~~llvlDd~~------~~~~~~~l~~~~~~~~~~~~il~tsr~~~~~~~~~~~~~~~l  183 (216)
                      ....+...+..++-++++|+..      ....+..++..+.   .+..+|++||+......+ +++.+.+
T Consensus       156 qrv~laral~~~p~lllLDEP~~gLD~~~~~~l~~~l~~~~---~~~tvii~sh~~~~~~~~-~d~v~~l  221 (253)
T PRK14261        156 QRLCIARTLAVNPEVILMDEPCSALDPIATAKIEDLIEDLK---KEYTVIIVTHNMQQAARV-SDYTGFM  221 (253)
T ss_pred             HHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHh---hCceEEEEEcCHHHHHhh-CCEEEEE
Confidence            3445777778888999999873      2234444444443   246899999998766543 3344333

>TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit

Probab=98.32  E-value=3.4e-06  Score=68.89  Aligned_cols=56  Identities=11%  Similarity=0.041  Sum_probs=36.2

Q ss_pred             hhHHHHHHHhCCceEEEEEeCCCC------HHHHHHhhcCCCCCCCCcEEEEEeCCchhhhcc
Q 039455          119 KGINLIRWRLCRKRVLVVLDDVDQ------LEQLQALAGNHDWFGFGSRIIITTRDEHVLKGH  175 (216)
Q Consensus       119 ~~~~~l~~~l~~~~~llvlDd~~~------~~~~~~l~~~~~~~~~~~~il~tsr~~~~~~~~  175 (216)
                      ...-.+.+.+..++-++++|+.-+      ...+.+++..+.. ..+.+||++||+.+.+..+
T Consensus       135 ~QRV~lARAL~~~p~iLLlDEP~saLD~~~r~~l~~~l~~l~~-~~~~Tii~vTHd~~ea~~~  196 (363)
T TIGR01186       135 QQRVGLARALAAEPDILLMDEAFSALDPLIRDSMQDELKKLQA-TLQKTIVFITHDLDEAIRI  196 (363)
T ss_pred             HHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHH-hcCCEEEEEeCCHHHHHHh
Confidence            334457888888999999998742      2334444333210 2367899999998765543

This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact

>cd03243 ABC_MutS_homologs The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch

Probab=98.32  E-value=4.8e-07  Score=68.03  Aligned_cols=23  Identities=26%  Similarity=0.176  Sum_probs=21.2

Q ss_pred             eeEEEEEecCCCcHHHHHHHHHH
Q 039455           49 VRFIGICGMGGIGKTTLAKVLYN   71 (216)
Q Consensus        49 ~~~i~I~G~~GiGKTtL~~~~~~   71 (216)
                      +..++|+|++|+|||||++.++.
T Consensus        29 ~~~~~l~G~Ng~GKStll~~i~~   51 (202)
T cd03243          29 GRLLLITGPNMGGKSTYLRSIGL   51 (202)
T ss_pred             CeEEEEECCCCCccHHHHHHHHH
Confidence            37999999999999999999984

Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, and recognition of specific DNA stru

>cd03289 ABCC_CFTR2 The CFTR subfamily domain 2

Probab=98.32  E-value=5.9e-06  Score=65.07  Aligned_cols=28  Identities=29%  Similarity=0.442  Sum_probs=24.5

Q ss_pred             CCeeEEEEEecCCCcHHHHHHHHHHHhc
Q 039455           47 DDVRFIGICGMGGIGKTTLAKVLYNTLK   74 (216)
Q Consensus        47 ~~~~~i~I~G~~GiGKTtL~~~~~~~~~   74 (216)
                      ..+..++|+|++|+|||||++.+.+.+.
T Consensus        28 ~~Ge~~~IvG~nGsGKSTLl~~L~gl~~   55 (275)
T cd03289          28 SPGQRVGLLGRTGSGKSTLLSAFLRLLN   55 (275)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhhhcC
Confidence            3468999999999999999999998654

The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.

>PRK13409 putative ATPase RIL; Provisional

Probab=98.32  E-value=3.4e-06  Score=73.24  Aligned_cols=54  Identities=17%  Similarity=0.111  Sum_probs=37.1

Q ss_pred             hhHHHHHHHhCCceEEEEEeCCCC------HHHHHHhhcCCCCCCCCcEEEEEeCCchhhhcc
Q 039455          119 KGINLIRWRLCRKRVLVVLDDVDQ------LEQLQALAGNHDWFGFGSRIIITTRDEHVLKGH  175 (216)
Q Consensus       119 ~~~~~l~~~l~~~~~llvlDd~~~------~~~~~~l~~~~~~~~~~~~il~tsr~~~~~~~~  175 (216)
                      ...-.+...+..++-+++||+.-+      ...+..++..+.  . +..+|++||+.+.+..+
T Consensus       218 ~qrv~ia~al~~~p~lllLDEPts~LD~~~~~~l~~~i~~l~--~-g~tvIivsHd~~~l~~~  277 (590)
T PRK13409        218 LQRVAIAAALLRDADFYFFDEPTSYLDIRQRLNVARLIRELA--E-GKYVLVVEHDLAVLDYL  277 (590)
T ss_pred             HHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHH--C-CCEEEEEeCCHHHHHHh
Confidence            334457778888899999998732      234444454443  3 67899999998776654

>PRK14238 phosphate transporter ATP-binding protein; Provisional

Probab=98.31  E-value=7.5e-06  Score=64.44  Aligned_cols=28  Identities=29%  Similarity=0.427  Sum_probs=24.8

Q ss_pred             CCeeEEEEEecCCCcHHHHHHHHHHHhc
Q 039455           47 DDVRFIGICGMGGIGKTTLAKVLYNTLK   74 (216)
Q Consensus        47 ~~~~~i~I~G~~GiGKTtL~~~~~~~~~   74 (216)
                      ..+..++|.|++|+|||||++.+++.+.
T Consensus        48 ~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~   75 (271)
T PRK14238         48 HENEVTAIIGPSGCGKSTYIKTLNRMVE   75 (271)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHHhhcc
Confidence            4568999999999999999999998654

>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein

Probab=98.31  E-value=2.5e-06  Score=72.92  Aligned_cols=62  Identities=13%  Similarity=0.168  Sum_probs=40.2

Q ss_pred             hhHHHHHHHhCCceEEEEEeCCC------CHHHHHHhhcCCCCCCCCcEEEEEeCCchhhhccCCcceEEe
Q 039455          119 KGINLIRWRLCRKRVLVVLDDVD------QLEQLQALAGNHDWFGFGSRIIITTRDEHVLKGHGVTNIYKV  183 (216)
Q Consensus       119 ~~~~~l~~~l~~~~~llvlDd~~------~~~~~~~l~~~~~~~~~~~~il~tsr~~~~~~~~~~~~~~~l  183 (216)
                      ...-.+...+..++-++++|+.-      ....+..++..+.  ..+..||++||+.+....+ ++..+.+
T Consensus       409 kqrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~--~~g~tviivsHd~~~~~~~-~d~v~~l  476 (500)
T TIGR02633       409 QQKAVLAKMLLTNPRVLILDEPTRGVDVGAKYEIYKLINQLA--QEGVAIIVVSSELAEVLGL-SDRVLVI  476 (500)
T ss_pred             HHHHHHHHHHhhCCCEEEEcCCCCCcCHhHHHHHHHHHHHHH--hCCCEEEEECCCHHHHHHh-CCEEEEE
Confidence            33445777888889999999773      2233444444443  2467899999998877665 3444444

Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).

>PRK09452 potA putrescine/spermidine ABC transporter ATPase protein; Reviewed

Probab=98.31  E-value=3.2e-06  Score=69.37  Aligned_cols=58  Identities=16%  Similarity=0.119  Sum_probs=36.8

Q ss_pred             hhhhHHHHHHHhCCceEEEEEeCCCC------HHHHHHhhcCCCCCCCCcEEEEEeCCchhhhcc
Q 039455          117 VHKGINLIRWRLCRKRVLVVLDDVDQ------LEQLQALAGNHDWFGFGSRIIITTRDEHVLKGH  175 (216)
Q Consensus       117 ~~~~~~~l~~~l~~~~~llvlDd~~~------~~~~~~l~~~~~~~~~~~~il~tsr~~~~~~~~  175 (216)
                      .+.....+.+.+..++-++++|+.-+      ...+...+..+.. ..+..+|++||+...+..+
T Consensus       148 Gq~QRVaLARaL~~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~-~~g~tiI~vTHd~~ea~~l  211 (375)
T PRK09452        148 GQQQRVAIARAVVNKPKVLLLDESLSALDYKLRKQMQNELKALQR-KLGITFVFVTHDQEEALTM  211 (375)
T ss_pred             HHHHHHHHHHHHhcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHH-hcCCEEEEEeCCHHHHHHh
Confidence            34445568888888999999998732      1333333333221 2367899999998764443

>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]

Probab=98.31  E-value=1.2e-05  Score=67.29  Aligned_cols=134  Identities=19%  Similarity=0.169  Sum_probs=77.9

Q ss_pred             CeeEEEEEecCCCcHHHHHHHHHHHhcCCCCceEeeccccccccccCchHHHHHHHHHHHhhccccccchhhhHHHHHHH
Q 039455           48 DVRFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLANVREVSVTRGLVPLQEQLLSEVLMERNLIIWDVHKGINLIRWR  127 (216)
Q Consensus        48 ~~~~i~I~G~~GiGKTtL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~  127 (216)
                      ....+++.||+|+|||+||..++..  ..||.+..++. .+   .-.+.+...                .......+...
T Consensus       537 ~lvSvLl~Gp~~sGKTaLAA~iA~~--S~FPFvKiiSp-e~---miG~sEsaK----------------c~~i~k~F~DA  594 (744)
T KOG0741|consen  537 PLVSVLLEGPPGSGKTALAAKIALS--SDFPFVKIISP-ED---MIGLSESAK----------------CAHIKKIFEDA  594 (744)
T ss_pred             cceEEEEecCCCCChHHHHHHHHhh--cCCCeEEEeCh-HH---ccCccHHHH----------------HHHHHHHHHHh
Confidence            3568999999999999999999864  56888887751 11   001111000                00111222333


Q ss_pred             hCCceEEEEEeCCCCHHHH---------------HHhhcCCCCCCCCcEEEEEeCCchhhhccC----CcceEEecCCCh
Q 039455          128 LCRKRVLVVLDDVDQLEQL---------------QALAGNHDWFGFGSRIIITTRDEHVLKGHG----VTNIYKVRGLDY  188 (216)
Q Consensus       128 l~~~~~llvlDd~~~~~~~---------------~~l~~~~~~~~~~~~il~tsr~~~~~~~~~----~~~~~~l~~l~~  188 (216)
                      -.+.-.+||+||+..+-+|               .-++...+-.++..-|+-||....++..++    ....+.++.++.
T Consensus       595 YkS~lsiivvDdiErLiD~vpIGPRfSN~vlQaL~VllK~~ppkg~kLli~~TTS~~~vL~~m~i~~~F~~~i~Vpnl~~  674 (744)
T KOG0741|consen  595 YKSPLSIIVVDDIERLLDYVPIGPRFSNLVLQALLVLLKKQPPKGRKLLIFGTTSRREVLQEMGILDCFSSTIHVPNLTT  674 (744)
T ss_pred             hcCcceEEEEcchhhhhcccccCchhhHHHHHHHHHHhccCCCCCceEEEEecccHHHHHHHcCHHHhhhheeecCccCc
Confidence            3345569999999655332               222233222223334455666667766653    346799999987


Q ss_pred             -HHHHHHHhhhh-cCCC
Q 039455          189 -VEALQLFHLKV-SKGK  203 (216)
Q Consensus       189 -~~~~~ll~~~~-~~~~  203 (216)
                       ++..+.+...- |.+.
T Consensus       675 ~~~~~~vl~~~n~fsd~  691 (744)
T KOG0741|consen  675 GEQLLEVLEELNIFSDD  691 (744)
T ss_pred             hHHHHHHHHHccCCCcc
Confidence             77777777544 4433

>PRK06871 DNA polymerase III subunit delta'; Validated

Probab=98.31  E-value=8.2e-05  Score=59.79  Aligned_cols=155  Identities=10%  Similarity=0.038  Sum_probs=82.6

Q ss_pred             HHHHHHHHHhcCCCCeeEEEEEecCCCcHHHHHHHHHHHhcCCCCceEeeccccccccccCchHHHHHHHHHHHhh----
Q 039455           34 RMEKMNGYLEAGLDDVRFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLANVREVSVTRGLVPLQEQLLSEVLME----  109 (216)
Q Consensus        34 ~~~~l~~~l~~~~~~~~~i~I~G~~GiGKTtL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----  109 (216)
                      .-+.|.+.+..+ .-...+.++|+.|+||+++|+.++..+--.-+...  ..++.       ...+..+...-...    
T Consensus        10 ~~~~l~~~~~~~-rl~HA~Lf~G~~G~GK~~lA~~~A~~llC~~~~~~--~~Cg~-------C~sC~~~~~g~HPD~~~i   79 (325)
T PRK06871         10 TYQQITQAFQQG-LGHHALLFKADSGLGTEQLIRALAQWLMCQTPQGD--QPCGQ-------CHSCHLFQAGNHPDFHIL   79 (325)
T ss_pred             HHHHHHHHHHcC-CcceeEEeECCCCCCHHHHHHHHHHHHcCCCCCCC--CCCCC-------CHHHHHHhcCCCCCEEEE
Confidence            344555555543 33468889999999999999999986532111000  00000       00000000000000    


Q ss_pred             --ccccccchhhhHHHHHHH-----hCCceEEEEEeCCCCH--HHHHHhhcCCCCCCCCcEEEEEeCCc-hhhhcc-CCc
Q 039455          110 --RNLIIWDVHKGINLIRWR-----LCRKRVLVVLDDVDQL--EQLQALAGNHDWFGFGSRIIITTRDE-HVLKGH-GVT  178 (216)
Q Consensus       110 --~~~~~~~~~~~~~~l~~~-----l~~~~~llvlDd~~~~--~~~~~l~~~~~~~~~~~~il~tsr~~-~~~~~~-~~~  178 (216)
                        ........+...+ +.+.     ..++.-++|||+++..  .....++..+..-..+..+|++|..+ .+...+ ..-
T Consensus        80 ~p~~~~~I~id~iR~-l~~~~~~~~~~g~~KV~iI~~a~~m~~~AaNaLLKtLEEPp~~~~fiL~t~~~~~llpTI~SRC  158 (325)
T PRK06871         80 EPIDNKDIGVDQVRE-INEKVSQHAQQGGNKVVYIQGAERLTEAAANALLKTLEEPRPNTYFLLQADLSAALLPTIYSRC  158 (325)
T ss_pred             ccccCCCCCHHHHHH-HHHHHhhccccCCceEEEEechhhhCHHHHHHHHHHhcCCCCCeEEEEEECChHhCchHHHhhc
Confidence              0000011111111 1111     2345679999999855  45666666655434556666676654 344343 234


Q ss_pred             ceEEecCCChHHHHHHHhhhh
Q 039455          179 NIYKVRGLDYVEALQLFHLKV  199 (216)
Q Consensus       179 ~~~~l~~l~~~~~~~ll~~~~  199 (216)
                      ..+.+.|++.++..+.+....
T Consensus       159 ~~~~~~~~~~~~~~~~L~~~~  179 (325)
T PRK06871        159 QTWLIHPPEEQQALDWLQAQS  179 (325)
T ss_pred             eEEeCCCCCHHHHHHHHHHHh
Confidence            789999999999999888753

>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional

Probab=98.31  E-value=2.6e-06  Score=72.83  Aligned_cols=55  Identities=11%  Similarity=0.172  Sum_probs=37.7

Q ss_pred             hhHHHHHHHhCCceEEEEEeCCC------CHHHHHHhhcCCCCCCCCcEEEEEeCCchhhhcc
Q 039455          119 KGINLIRWRLCRKRVLVVLDDVD------QLEQLQALAGNHDWFGFGSRIIITTRDEHVLKGH  175 (216)
Q Consensus       119 ~~~~~l~~~l~~~~~llvlDd~~------~~~~~~~l~~~~~~~~~~~~il~tsr~~~~~~~~  175 (216)
                      ...-.+...+..++-+|++|+.-      +...+..++..+.  ..+..||++||+.+....+
T Consensus       402 ~qrl~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~--~~g~tviivsHd~~~~~~~  462 (501)
T PRK11288        402 QQKAILGRWLSEDMKVILLDEPTRGIDVGAKHEIYNVIYELA--AQGVAVLFVSSDLPEVLGV  462 (501)
T ss_pred             HHHHHHHHHHccCCCEEEEcCCCCCCCHhHHHHHHHHHHHHH--hCCCEEEEECCCHHHHHhh
Confidence            33445777888899999999773      2344444444443  3467899999998876655

>smart00534 MUTSac ATPase domain of DNA mismatch repair MUTS family

Probab=98.31  E-value=2.3e-07  Score=68.77  Aligned_cols=21  Identities=24%  Similarity=0.120  Sum_probs=19.0

Q ss_pred             EEEEEecCCCcHHHHHHHHHH
Q 039455           51 FIGICGMGGIGKTTLAKVLYN   71 (216)
Q Consensus        51 ~i~I~G~~GiGKTtL~~~~~~   71 (216)
                      +++|+|++|.||||+++.++.
T Consensus         1 ~~~ltG~N~~GKst~l~~i~~   21 (185)
T smart00534        1 VVIITGPNMGGKSTYLRQVGL   21 (185)
T ss_pred             CEEEECCCCCcHHHHHHHHHH
Confidence            368999999999999999984

>COG1119 ModF ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism]

Probab=98.31  E-value=1.3e-05  Score=60.81  Aligned_cols=25  Identities=36%  Similarity=0.418  Sum_probs=22.2

Q ss_pred             CeeEEEEEecCCCcHHHHHHHHHHH
Q 039455           48 DVRFIGICGMGGIGKTTLAKVLYNT   72 (216)
Q Consensus        48 ~~~~i~I~G~~GiGKTtL~~~~~~~   72 (216)
                      .+...+|+|++|+|||||++.+...
T Consensus        56 ~ge~W~I~G~NGsGKTTLL~ll~~~   80 (257)
T COG1119          56 PGEHWAIVGPNGAGKTTLLSLLTGE   80 (257)
T ss_pred             CCCcEEEECCCCCCHHHHHHHHhcc
Confidence            3578999999999999999999874

>KOG0739 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]

Probab=98.31  E-value=6.9e-06  Score=64.04  Aligned_cols=166  Identities=17%  Similarity=0.168  Sum_probs=88.3

Q ss_pred             ccccccchhHHHHHHHHHh----------cCCCCeeEEEEEecCCCcHHHHHHHHHHHhcCCCCceEeeccccccccccC
Q 039455           25 VDGLVGIASRMEKMNGYLE----------AGLDDVRFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLANVREVSVTRG   94 (216)
Q Consensus        25 ~~~~vgR~~~~~~l~~~l~----------~~~~~~~~i~I~G~~GiGKTtL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   94 (216)
                      ....-|-+...+.|...+.          .+..--+.|.++||+|+|||.||++++......     |++..++      
T Consensus       132 WsDVAGLE~AKeALKEAVILPIKFPqlFtGkR~PwrgiLLyGPPGTGKSYLAKAVATEAnST-----FFSvSSS------  200 (439)
T KOG0739|consen  132 WSDVAGLEGAKEALKEAVILPIKFPQLFTGKRKPWRGILLYGPPGTGKSYLAKAVATEANST-----FFSVSSS------  200 (439)
T ss_pred             hhhhccchhHHHHHHhheeecccchhhhcCCCCcceeEEEeCCCCCcHHHHHHHHHhhcCCc-----eEEeehH------
Confidence            4556777777777766432          111225689999999999999999999865433     2321111      


Q ss_pred             chHHHHHHHHHHHhhccccccchhhhHHHHHHHh-CCceEEEEEeCCCCH---------HHHH----HhhcCCC---CCC
Q 039455           95 LVPLQEQLLSEVLMERNLIIWDVHKGINLIRWRL-CRKRVLVVLDDVDQL---------EQLQ----ALAGNHD---WFG  157 (216)
Q Consensus        95 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l-~~~~~llvlDd~~~~---------~~~~----~l~~~~~---~~~  157 (216)
                            ++.+..++       ..+.++..+..+. ++++.+|++|++++.         +...    .++..+.   +..
T Consensus       201 ------DLvSKWmG-------ESEkLVknLFemARe~kPSIIFiDEiDslcg~r~enEseasRRIKTEfLVQMqGVG~d~  267 (439)
T KOG0739|consen  201 ------DLVSKWMG-------ESEKLVKNLFEMARENKPSIIFIDEIDSLCGSRSENESEASRRIKTEFLVQMQGVGNDN  267 (439)
T ss_pred             ------HHHHHHhc-------cHHHHHHHHHHHHHhcCCcEEEeehhhhhccCCCCCchHHHHHHHHHHHHhhhccccCC
Confidence                  22222211       1233444444433 468999999999744         2222    2222222   112


Q ss_pred             CCcEEEEEeCCchhhhcc---CCcceEEecCCChHHHHHHHhhhhcCCC--CCchhHhhhcc
Q 039455          158 FGSRIIITTRDEHVLKGH---GVTNIYKVRGLDYVEALQLFHLKVSKGK--QPTDDRVELSK  214 (216)
Q Consensus       158 ~~~~il~tsr~~~~~~~~---~~~~~~~l~~l~~~~~~~ll~~~~~~~~--~~~~~~~~l~~  214 (216)
                      .|.-+|-+|..+-.+...   .....|-++--.......+|+-+++...  ..++++++|++
T Consensus       268 ~gvLVLgATNiPw~LDsAIRRRFekRIYIPLPe~~AR~~MF~lhlG~tp~~LT~~d~~eL~~  329 (439)
T KOG0739|consen  268 DGVLVLGATNIPWVLDSAIRRRFEKRIYIPLPEAHARARMFKLHLGDTPHVLTEQDFKELAR  329 (439)
T ss_pred             CceEEEecCCCchhHHHHHHHHhhcceeccCCcHHHhhhhheeccCCCccccchhhHHHHHh
Confidence            344455566655333221   1234444543334444456665654432  34467777765

>PRK13549 xylose transporter ATP-binding subunit; Provisional

Probab=98.31  E-value=3.5e-06  Score=72.14  Aligned_cols=55  Identities=15%  Similarity=0.145  Sum_probs=37.4

Q ss_pred             hhHHHHHHHhCCceEEEEEeCCC------CHHHHHHhhcCCCCCCCCcEEEEEeCCchhhhcc
Q 039455          119 KGINLIRWRLCRKRVLVVLDDVD------QLEQLQALAGNHDWFGFGSRIIITTRDEHVLKGH  175 (216)
Q Consensus       119 ~~~~~l~~~l~~~~~llvlDd~~------~~~~~~~l~~~~~~~~~~~~il~tsr~~~~~~~~  175 (216)
                      .....+...+..++-++++|+.-      +...+..++..+.  ..+..||++||+.+....+
T Consensus       411 kqrv~lA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~--~~g~tvi~~sHd~~~~~~~  471 (506)
T PRK13549        411 QQKAVLAKCLLLNPKILILDEPTRGIDVGAKYEIYKLINQLV--QQGVAIIVISSELPEVLGL  471 (506)
T ss_pred             HHHHHHHHHHhhCCCEEEEcCCCCCcCHhHHHHHHHHHHHHH--HCCCEEEEECCCHHHHHHh
Confidence            33445777888888999999773      2344445544443  2467899999998776654

>PRK14237 phosphate transporter ATP-binding protein; Provisional

Probab=98.31  E-value=5.1e-06  Score=65.22  Aligned_cols=28  Identities=21%  Similarity=0.356  Sum_probs=24.6

Q ss_pred             CCeeEEEEEecCCCcHHHHHHHHHHHhc
Q 039455           47 DDVRFIGICGMGGIGKTTLAKVLYNTLK   74 (216)
Q Consensus        47 ~~~~~i~I~G~~GiGKTtL~~~~~~~~~   74 (216)
                      ..+..++|.|++|+|||||++.+++...
T Consensus        44 ~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~   71 (267)
T PRK14237         44 EKNKITALIGPSGSGKSTYLRSLNRMND   71 (267)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHHhccC
Confidence            3568999999999999999999998653

>PRK15112 antimicrobial peptide ABC system ATP-binding protein SapF; Provisional

Probab=98.31  E-value=2.6e-06  Score=66.86  Aligned_cols=62  Identities=15%  Similarity=0.043  Sum_probs=38.1

Q ss_pred             hHHHHHHHhCCceEEEEEeCCCC------HHHHHHhhcCCCCCCCCcEEEEEeCCchhhhccCCcceEEe
Q 039455          120 GINLIRWRLCRKRVLVVLDDVDQ------LEQLQALAGNHDWFGFGSRIIITTRDEHVLKGHGVTNIYKV  183 (216)
Q Consensus       120 ~~~~l~~~l~~~~~llvlDd~~~------~~~~~~l~~~~~~~~~~~~il~tsr~~~~~~~~~~~~~~~l  183 (216)
                      ..-.+...+..++-++++|+.-+      ...+..++..+.. ..+..||++||+.+....+ +++.+.+
T Consensus       156 qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~-~~g~tviivsH~~~~~~~~-~d~i~~l  223 (267)
T PRK15112        156 QRLGLARALILRPKVIIADEALASLDMSMRSQLINLMLELQE-KQGISYIYVTQHLGMMKHI-SDQVLVM  223 (267)
T ss_pred             HHHHHHHHHHhCCCEEEEcCCcccCCHHHHHHHHHHHHHHHH-HcCcEEEEEeCCHHHHHHh-cCEEEEE
Confidence            34457777788899999998732      2334444433321 1367899999998776654 3344333

>PRK13636 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=98.31  E-value=1.5e-06  Score=68.74  Aligned_cols=54  Identities=22%  Similarity=0.198  Sum_probs=34.7

Q ss_pred             HHHHHHHhCCceEEEEEeCCCC------HHHHHHhhcCCCCCCCCcEEEEEeCCchhhhcc
Q 039455          121 INLIRWRLCRKRVLVVLDDVDQ------LEQLQALAGNHDWFGFGSRIIITTRDEHVLKGH  175 (216)
Q Consensus       121 ~~~l~~~l~~~~~llvlDd~~~------~~~~~~l~~~~~~~~~~~~il~tsr~~~~~~~~  175 (216)
                      .-.+...+..++-++++|+...      ...+..++..+.. ..+..||++||+.+....+
T Consensus       149 rl~laraL~~~p~lLilDEPt~gLD~~~~~~l~~~l~~l~~-~~g~tillvsH~~~~~~~~  208 (283)
T PRK13636        149 RVAIAGVLVMEPKVLVLDEPTAGLDPMGVSEIMKLLVEMQK-ELGLTIIIATHDIDIVPLY  208 (283)
T ss_pred             HHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHH-hCCCEEEEEecCHHHHHHh
Confidence            4457777888899999998732      2333344433321 2367899999998776543

>PRK15079 oligopeptide ABC transporter ATP-binding protein OppF; Provisional

Probab=98.30  E-value=3.5e-06  Score=68.11  Aligned_cols=55  Identities=20%  Similarity=0.135  Sum_probs=35.8

Q ss_pred             hHHHHHHHhCCceEEEEEeCCCC------HHHHHHhhcCCCCCCCCcEEEEEeCCchhhhcc
Q 039455          120 GINLIRWRLCRKRVLVVLDDVDQ------LEQLQALAGNHDWFGFGSRIIITTRDEHVLKGH  175 (216)
Q Consensus       120 ~~~~l~~~l~~~~~llvlDd~~~------~~~~~~l~~~~~~~~~~~~il~tsr~~~~~~~~  175 (216)
                      ....+...+..++-+||+|+.-+      ..++..++..+.. ..+..+|++||+...+..+
T Consensus       168 QRv~iArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~-~~~~til~iTHdl~~~~~~  228 (331)
T PRK15079        168 QRIGIARALILEPKLIICDEPVSALDVSIQAQVVNLLQQLQR-EMGLSLIFIAHDLAVVKHI  228 (331)
T ss_pred             HHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHH-HcCCEEEEEeCCHHHHHHh
Confidence            34457788888999999998742      2233333333321 2367899999998776553

>PRK14248 phosphate ABC transporter ATP-binding protein; Provisional

Probab=98.30  E-value=5.8e-06  Score=64.94  Aligned_cols=59  Identities=17%  Similarity=0.085  Sum_probs=37.2

Q ss_pred             HHHHHHHhCCceEEEEEeCCC------CHHHHHHhhcCCCCCCCCcEEEEEeCCchhhhccCCcceEEe
Q 039455          121 INLIRWRLCRKRVLVVLDDVD------QLEQLQALAGNHDWFGFGSRIIITTRDEHVLKGHGVTNIYKV  183 (216)
Q Consensus       121 ~~~l~~~l~~~~~llvlDd~~------~~~~~~~l~~~~~~~~~~~~il~tsr~~~~~~~~~~~~~~~l  183 (216)
                      .-.+...+..++-++++|+.-      +...+..++..+.   .+..||++||+.+....+ +++.+.+
T Consensus       172 rl~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~---~~~tiii~tH~~~~~~~~-~d~v~~l  236 (268)
T PRK14248        172 RLCIARTLAMKPAVLLLDEPASALDPISNAKIEELITELK---EEYSIIIVTHNMQQALRV-SDRTAFF  236 (268)
T ss_pred             HHHHHHHHhCCCCEEEEcCCCcccCHHHHHHHHHHHHHHh---cCCEEEEEEeCHHHHHHh-CCEEEEE
Confidence            335677777888899999773      2234444444442   246799999998765544 3444444

>PRK14245 phosphate ABC transporter ATP-binding protein; Provisional

Probab=98.30  E-value=5e-06  Score=64.64  Aligned_cols=60  Identities=10%  Similarity=0.055  Sum_probs=38.0

Q ss_pred             hHHHHHHHhCCceEEEEEeCCC------CHHHHHHhhcCCCCCCCCcEEEEEeCCchhhhccCCcceEEe
Q 039455          120 GINLIRWRLCRKRVLVVLDDVD------QLEQLQALAGNHDWFGFGSRIIITTRDEHVLKGHGVTNIYKV  183 (216)
Q Consensus       120 ~~~~l~~~l~~~~~llvlDd~~------~~~~~~~l~~~~~~~~~~~~il~tsr~~~~~~~~~~~~~~~l  183 (216)
                      ..-.+...+..++-++++|+..      +...+..++..+.   .+..||++||+.+....+ +++.+.+
T Consensus       153 qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~---~~~tiiivtH~~~~~~~~-~d~v~~l  218 (250)
T PRK14245        153 QRLCIARAMAVSPSVLLMDEPASALDPISTAKVEELIHELK---KDYTIVIVTHNMQQAARV-SDKTAFF  218 (250)
T ss_pred             HHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHh---cCCeEEEEeCCHHHHHhh-CCEEEEE
Confidence            3445777778888899999773      2234444444432   257899999998766543 3444444

>PRK10418 nikD nickel transporter ATP-binding protein NikD; Provisional

Probab=98.30  E-value=3.7e-06  Score=65.53  Aligned_cols=28  Identities=21%  Similarity=0.328  Sum_probs=24.5

Q ss_pred             CCeeEEEEEecCCCcHHHHHHHHHHHhc
Q 039455           47 DDVRFIGICGMGGIGKTTLAKVLYNTLK   74 (216)
Q Consensus        47 ~~~~~i~I~G~~GiGKTtL~~~~~~~~~   74 (216)
                      ..+..++|.|++|+|||||++.+++...
T Consensus        27 ~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~   54 (254)
T PRK10418         27 QRGRVLALVGGSGSGKSLTCAAALGILP   54 (254)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence            4568999999999999999999998654

>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional

Probab=98.30  E-value=3e-06  Score=72.30  Aligned_cols=63  Identities=17%  Similarity=0.168  Sum_probs=42.0

Q ss_pred             hhhHHHHHHHhCCceEEEEEeCCC------CHHHHHHhhcCCCCCCCCcEEEEEeCCchhhhccCCcceEEe
Q 039455          118 HKGINLIRWRLCRKRVLVVLDDVD------QLEQLQALAGNHDWFGFGSRIIITTRDEHVLKGHGVTNIYKV  183 (216)
Q Consensus       118 ~~~~~~l~~~l~~~~~llvlDd~~------~~~~~~~l~~~~~~~~~~~~il~tsr~~~~~~~~~~~~~~~l  183 (216)
                      +...-.+...+..++-++++|+.-      ....+..++..+.  ..+..||++||+.+....+ ++..+.+
T Consensus       396 q~qrv~la~al~~~p~illLDEPt~gLD~~~~~~~~~~l~~l~--~~~~tvi~vsHd~~~~~~~-~d~v~~l  464 (491)
T PRK10982        396 NQQKVIIGRWLLTQPEILMLDEPTRGIDVGAKFEIYQLIAELA--KKDKGIIIISSEMPELLGI-TDRILVM  464 (491)
T ss_pred             HHHHHHHHHHHhcCCCEEEEcCCCcccChhHHHHHHHHHHHHH--HCCCEEEEECCChHHHHhh-CCEEEEE
Confidence            344556788888899999999762      3344544454443  2467899999998877665 4444444

>PRK14240 phosphate transporter ATP-binding protein; Provisional

Probab=98.30  E-value=5.9e-06  Score=64.20  Aligned_cols=59  Identities=12%  Similarity=0.065  Sum_probs=37.5

Q ss_pred             HHHHHHHhCCceEEEEEeCCCC------HHHHHHhhcCCCCCCCCcEEEEEeCCchhhhccCCcceEEe
Q 039455          121 INLIRWRLCRKRVLVVLDDVDQ------LEQLQALAGNHDWFGFGSRIIITTRDEHVLKGHGVTNIYKV  183 (216)
Q Consensus       121 ~~~l~~~l~~~~~llvlDd~~~------~~~~~~l~~~~~~~~~~~~il~tsr~~~~~~~~~~~~~~~l  183 (216)
                      ...+...+..++-++++|+...      ...+..++..+.   .+..||++||+.+....+ +++.+.+
T Consensus       154 rv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~---~~~tiii~sH~~~~~~~~-~d~v~~l  218 (250)
T PRK14240        154 RLCIARALAVEPEVLLMDEPTSALDPISTLKIEELIQELK---KDYTIVIVTHNMQQASRI-SDKTAFF  218 (250)
T ss_pred             HHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHh---cCCeEEEEEeCHHHHHhh-CCEEEEE
Confidence            4457777778888999998732      233444444442   256899999998765554 3444444

>PRK13548 hmuV hemin importer ATP-binding subunit; Provisional

Probab=98.30  E-value=5e-06  Score=64.93  Aligned_cols=28  Identities=32%  Similarity=0.460  Sum_probs=24.3

Q ss_pred             CCeeEEEEEecCCCcHHHHHHHHHHHhc
Q 039455           47 DDVRFIGICGMGGIGKTTLAKVLYNTLK   74 (216)
Q Consensus        47 ~~~~~i~I~G~~GiGKTtL~~~~~~~~~   74 (216)
                      ..+..++|.|++|+|||||++.+++...
T Consensus        26 ~~Ge~~~i~G~nGsGKSTLl~~i~G~~~   53 (258)
T PRK13548         26 RPGEVVAILGPNGAGKSTLLRALSGELS   53 (258)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence            3467999999999999999999998543

>COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]

Probab=98.30  E-value=8.3e-07  Score=71.43  Aligned_cols=57  Identities=16%  Similarity=0.191  Sum_probs=38.4

Q ss_pred             ccchhhhHHHHHHHhCCceEEEEEeCCCCH------H----HHHHhhcCCCCCCCCcEEEEEeCCchhhhcc
Q 039455          114 IWDVHKGINLIRWRLCRKRVLVVLDDVDQL------E----QLQALAGNHDWFGFGSRIIITTRDEHVLKGH  175 (216)
Q Consensus       114 ~~~~~~~~~~l~~~l~~~~~llvlDd~~~~------~----~~~~l~~~~~~~~~~~~il~tsr~~~~~~~~  175 (216)
                      .+..+....++.+.|..+|-+|++|+.-+.      +    ++..+...     .|.+.|+.||+.+.+-.+
T Consensus       137 LSGGQqQRVALARAL~~~P~vLLLDEPlSaLD~kLR~~mr~Elk~lq~~-----~giT~i~VTHDqeEAl~m  203 (352)
T COG3842         137 LSGGQQQRVALARALVPEPKVLLLDEPLSALDAKLREQMRKELKELQRE-----LGITFVYVTHDQEEALAM  203 (352)
T ss_pred             hChHHHHHHHHHHHhhcCcchhhhcCcccchhHHHHHHHHHHHHHHHHh-----cCCeEEEEECCHHHHhhh
Confidence            344556667899999999999999987322      1    22233222     378899999998654443

>cd03287 ABC_MSH3_euk MutS3 homolog in eukaryotes

Probab=98.30  E-value=7.4e-07  Score=67.81  Aligned_cols=118  Identities=14%  Similarity=0.021  Sum_probs=61.0

Q ss_pred             CeeEEEEEecCCCcHHHHHHHHHH-HhcCCCCceEeeccccccccccCchHHHHHHHHHHHhhcc--ccccchhhhHHHH
Q 039455           48 DVRFIGICGMGGIGKTTLAKVLYN-TLKDQFEASSFLANVREVSVTRGLVPLQEQLLSEVLMERN--LIIWDVHKGINLI  124 (216)
Q Consensus        48 ~~~~i~I~G~~GiGKTtL~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~--~~~~~~~~~~~~l  124 (216)
                      .+..++|+|++|.||||+++.++. .+..+.....|-... ...       ...+++..+...++  ...+.+..-...+
T Consensus        30 ~g~~~~itG~N~~GKStll~~i~~~~~la~~G~~v~a~~~-~~~-------~~~~i~~~~~~~d~~~~~~StF~~e~~~~  101 (222)
T cd03287          30 GGYCQIITGPNMGGKSSYIRQVALITIMAQIGSFVPASSA-TLS-------IFDSVLTRMGASDSIQHGMSTFMVELSET  101 (222)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHHHHHHhCCCEEEcCce-EEe-------ccceEEEEecCccccccccchHHHHHHHH
Confidence            357899999999999999999987 443333333333211 000       01111111111111  0111222223334


Q ss_pred             HHHhC--CceEEEEEeCCCC----HHH---HHHhhcCCCCCCCCcEEEEEeCCchhhhc
Q 039455          125 RWRLC--RKRVLVVLDDVDQ----LEQ---LQALAGNHDWFGFGSRIIITTRDEHVLKG  174 (216)
Q Consensus       125 ~~~l~--~~~~llvlDd~~~----~~~---~~~l~~~~~~~~~~~~il~tsr~~~~~~~  174 (216)
                      ...+.  +++.++++|++..    .+.   ...++..+.. ..++.+|++||+.++...
T Consensus       102 ~~il~~~~~~sLvllDE~~~gT~~~d~~~i~~~il~~l~~-~~~~~~i~~TH~~~l~~~  159 (222)
T cd03287         102 SHILSNCTSRSLVILDELGRGTSTHDGIAIAYATLHYLLE-EKKCLVLFVTHYPSLGEI  159 (222)
T ss_pred             HHHHHhCCCCeEEEEccCCCCCChhhHHHHHHHHHHHHHh-ccCCeEEEEcccHHHHHH
Confidence            44433  4688999999721    221   1223333331 146889999999877543

The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c

>TIGR01817 nifA Nif-specific regulatory protein

Probab=98.30  E-value=8.3e-06  Score=70.27  Aligned_cols=51  Identities=20%  Similarity=0.244  Sum_probs=42.0

Q ss_pred             cccccccchhHHHHHHHHHhcCCCCeeEEEEEecCCCcHHHHHHHHHHHhc
Q 039455           24 AVDGLVGIASRMEKMNGYLEAGLDDVRFIGICGMGGIGKTTLAKVLYNTLK   74 (216)
Q Consensus        24 ~~~~~vgR~~~~~~l~~~l~~~~~~~~~i~I~G~~GiGKTtL~~~~~~~~~   74 (216)
                      ....++|++..++++.+.+..-......|.|+|++|+|||++|+.+.....
T Consensus       194 ~~~~liG~s~~~~~~~~~~~~~a~~~~pvli~Ge~GtGK~~lA~~ih~~s~  244 (534)
T TIGR01817       194 KEDGIIGKSPAMRQVVDQARVVARSNSTVLLRGESGTGKELIAKAIHYLSP  244 (534)
T ss_pred             ccCceEECCHHHHHHHHHHHHHhCcCCCEEEECCCCccHHHHHHHHHHhCC
Confidence            445789999999999887765434557899999999999999999987543

This model represents NifA, a DNA-binding regulatory protein for nitrogen fixation. The model produces scores between the trusted and noise cutoffs for a well-described NifA homolog in Aquifex aeolicus (which lacks nitrogenase), for transcriptional activators of alternative nitrogenases (VFe or FeFe instead of MoFe), and truncated forms.

>PRK11607 potG putrescine transporter ATP-binding subunit; Provisional

Probab=98.29  E-value=3.9e-06  Score=68.96  Aligned_cols=58  Identities=14%  Similarity=0.110  Sum_probs=36.3

Q ss_pred             hhhhHHHHHHHhCCceEEEEEeCCCC------HHHHHHhhcCCCCCCCCcEEEEEeCCchhhhcc
Q 039455          117 VHKGINLIRWRLCRKRVLVVLDDVDQ------LEQLQALAGNHDWFGFGSRIIITTRDEHVLKGH  175 (216)
Q Consensus       117 ~~~~~~~l~~~l~~~~~llvlDd~~~------~~~~~~l~~~~~~~~~~~~il~tsr~~~~~~~~  175 (216)
                      .+...-.+.+.+..++-+|++|+.-+      ...+...+..+.. ..+..+|++||+.+.+..+
T Consensus       153 Gq~QRVaLARAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~-~~g~tii~vTHd~~ea~~l  216 (377)
T PRK11607        153 GQRQRVALARSLAKRPKLLLLDEPMGALDKKLRDRMQLEVVDILE-RVGVTCVMVTHDQEEAMTM  216 (377)
T ss_pred             HHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHH-hcCCEEEEEcCCHHHHHHh
Confidence            34445568888889999999998732      1223222222211 2357899999998765443

>cd03240 ABC_Rad50 The catalytic domains of Rad50 are similar to the ATP-binding cassette of ABC transporters, but are not associated with membrane-spanning domains

Probab=98.29  E-value=7.7e-06  Score=61.61  Aligned_cols=59  Identities=19%  Similarity=0.344  Sum_probs=38.3

Q ss_pred             HHHHHhCCceEEEEEeCCCC------HH-HHHHhhcCCCCCCC-CcEEEEEeCCchhhhccCCcceEEecC
Q 039455          123 LIRWRLCRKRVLVVLDDVDQ------LE-QLQALAGNHDWFGF-GSRIIITTRDEHVLKGHGVTNIYKVRG  185 (216)
Q Consensus       123 ~l~~~l~~~~~llvlDd~~~------~~-~~~~l~~~~~~~~~-~~~il~tsr~~~~~~~~~~~~~~~l~~  185 (216)
                      .+...+..++-++++|+...      .. .+..++..+.  .. +..+|++||+.+....  ++..+.+..
T Consensus       131 ala~al~~~p~illlDEP~~~LD~~~~~~~l~~~l~~~~--~~~~~~iiiitH~~~~~~~--~d~i~~l~~  197 (204)
T cd03240         131 ALAETFGSNCGILALDEPTTNLDEENIEESLAEIIEERK--SQKNFQLIVITHDEELVDA--ADHIYRVEK  197 (204)
T ss_pred             HHHHHhccCCCEEEEcCCccccCHHHHHHHHHHHHHHHH--hccCCEEEEEEecHHHHhh--CCEEEEEee
Confidence            45667778899999998842      23 3444444332  22 5679999999877653  556666543

The conserved ATP-binding motifs common to Rad50 and the ABC transporter family include the Walker A and Walker B motifs, the Q loop, a histidine residue in the switch region, a D-loop, and a conserved LSGG sequence. This conserved sequence, LSGG, is the most specific and characteristic motif of this family and is thus known as the ABC signature sequence.

>PRK14253 phosphate ABC transporter ATP-binding protein; Provisional

Probab=98.29  E-value=5.5e-06  Score=64.34  Aligned_cols=53  Identities=11%  Similarity=0.133  Sum_probs=35.0

Q ss_pred             hHHHHHHHhCCceEEEEEeCCCC------HHHHHHhhcCCCCCCCCcEEEEEeCCchhhhcc
Q 039455          120 GINLIRWRLCRKRVLVVLDDVDQ------LEQLQALAGNHDWFGFGSRIIITTRDEHVLKGH  175 (216)
Q Consensus       120 ~~~~l~~~l~~~~~llvlDd~~~------~~~~~~l~~~~~~~~~~~~il~tsr~~~~~~~~  175 (216)
                      ....+.+.+..++-++++|+.-.      ...+..++..+.   .+..||++||+.+....+
T Consensus       152 qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~---~~~tii~~sh~~~~~~~~  210 (249)
T PRK14253        152 QRLCIARTIAMEPDVILMDEPTSALDPIATHKIEELMEELK---KNYTIVIVTHSMQQARRI  210 (249)
T ss_pred             HHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHh---cCCeEEEEecCHHHHHHh
Confidence            34457777788889999998732      233444444433   246899999998765554

>TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein

Probab=98.29  E-value=4.4e-06  Score=68.62  Aligned_cols=54  Identities=13%  Similarity=0.003  Sum_probs=35.4

Q ss_pred             HHHHHHHhCCceEEEEEeCCCC------HHHHHHhhcCCCCCCCCcEEEEEeCCchhhhcc
Q 039455          121 INLIRWRLCRKRVLVVLDDVDQ------LEQLQALAGNHDWFGFGSRIIITTRDEHVLKGH  175 (216)
Q Consensus       121 ~~~l~~~l~~~~~llvlDd~~~------~~~~~~l~~~~~~~~~~~~il~tsr~~~~~~~~  175 (216)
                      ...+.+.+..++-++++|+.-+      ...+.+++..+.. ..+..||++||+.+.+..+
T Consensus       172 RV~LARALa~~P~ILLlDEPts~LD~~~r~~l~~~L~~l~~-~~~~TII~iTHdl~e~~~l  231 (382)
T TIGR03415       172 RVGLARAFAMDADILLMDEPFSALDPLIRTQLQDELLELQA-KLNKTIIFVSHDLDEALKI  231 (382)
T ss_pred             HHHHHHHHhcCCCEEEEECCCccCCHHHHHHHHHHHHHHHH-hcCCEEEEEeCCHHHHHHh
Confidence            4457888888999999998732      2334444433320 1367899999998775543

Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines.

>PRK13549 xylose transporter ATP-binding subunit; Provisional

Probab=98.29  E-value=2.7e-06  Score=72.81  Aligned_cols=55  Identities=16%  Similarity=0.180  Sum_probs=36.9

Q ss_pred             hhHHHHHHHhCCceEEEEEeCCCC------HHHHHHhhcCCCCCCCCcEEEEEeCCchhhhcc
Q 039455          119 KGINLIRWRLCRKRVLVVLDDVDQ------LEQLQALAGNHDWFGFGSRIIITTRDEHVLKGH  175 (216)
Q Consensus       119 ~~~~~l~~~l~~~~~llvlDd~~~------~~~~~~l~~~~~~~~~~~~il~tsr~~~~~~~~  175 (216)
                      ...-.+...+..++-++++|+.-+      ...+..++..+.  ..+..||++||+.+.+..+
T Consensus       149 kqrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~--~~~~tvi~~tH~~~~~~~~  209 (506)
T PRK13549        149 QQLVEIAKALNKQARLLILDEPTASLTESETAVLLDIIRDLK--AHGIACIYISHKLNEVKAI  209 (506)
T ss_pred             HHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHH--HCCCEEEEEeCcHHHHHHh
Confidence            344467888888999999998732      233444444432  2467899999998766554

>PRK13639 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=98.29  E-value=2e-06  Score=67.82  Aligned_cols=53  Identities=26%  Similarity=0.221  Sum_probs=35.5

Q ss_pred             HHHHHHHhCCceEEEEEeCCCC------HHHHHHhhcCCCCCCCCcEEEEEeCCchhhhcc
Q 039455          121 INLIRWRLCRKRVLVVLDDVDQ------LEQLQALAGNHDWFGFGSRIIITTRDEHVLKGH  175 (216)
Q Consensus       121 ~~~l~~~l~~~~~llvlDd~~~------~~~~~~l~~~~~~~~~~~~il~tsr~~~~~~~~  175 (216)
                      ...+...+..++-++++|+...      ...+..++..+.  ..+..||++||+.+....+
T Consensus       145 rv~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~--~~~~til~vtH~~~~~~~~  203 (275)
T PRK13639        145 RVAIAGILAMKPEIIVLDEPTSGLDPMGASQIMKLLYDLN--KEGITIIISTHDVDLVPVY  203 (275)
T ss_pred             HHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHH--HCCCEEEEEecCHHHHHHh
Confidence            4457777888889999998732      233444444433  2367899999998766543

>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2

Probab=98.29  E-value=5.1e-06  Score=71.36  Aligned_cols=62  Identities=10%  Similarity=0.104  Sum_probs=39.1

Q ss_pred             hHHHHHHHhCCceEEEEEeCCCC------HHHHHHhhcCCCCCCCCcEEEEEeCCchhhhccCCcceEEe
Q 039455          120 GINLIRWRLCRKRVLVVLDDVDQ------LEQLQALAGNHDWFGFGSRIIITTRDEHVLKGHGVTNIYKV  183 (216)
Q Consensus       120 ~~~~l~~~l~~~~~llvlDd~~~------~~~~~~l~~~~~~~~~~~~il~tsr~~~~~~~~~~~~~~~l  183 (216)
                      ....+...+..++-+|++|+.-+      ...+..++..+.. ..+..||++||+.+....+ +++.+.+
T Consensus       175 qrv~iA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~-~~g~tviivtHd~~~~~~~-~d~i~~l  242 (520)
T TIGR03269       175 QRVVLARQLAKEPFLFLADEPTGTLDPQTAKLVHNALEEAVK-ASGISMVLTSHWPEVIEDL-SDKAIWL  242 (520)
T ss_pred             HHHHHHHHHhcCCCEEEeeCCcccCCHHHHHHHHHHHHHHHH-hcCcEEEEEeCCHHHHHHh-cCEEEEE
Confidence            34467778888899999998732      2333333333321 2367899999998876654 3444444

The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.

>PRK13635 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=98.29  E-value=2.3e-06  Score=67.58  Aligned_cols=53  Identities=13%  Similarity=0.065  Sum_probs=34.5

Q ss_pred             hHHHHHHHhCCceEEEEEeCCCC------HHHHHHhhcCCCCCCCCcEEEEEeCCchhhh
Q 039455          120 GINLIRWRLCRKRVLVVLDDVDQ------LEQLQALAGNHDWFGFGSRIIITTRDEHVLK  173 (216)
Q Consensus       120 ~~~~l~~~l~~~~~llvlDd~~~------~~~~~~l~~~~~~~~~~~~il~tsr~~~~~~  173 (216)
                      ..-.+...+..++-+|++|+...      ...+..++..+.. ..+..||++||+.+...
T Consensus       147 qrv~laral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~l~~-~~~~tilivsH~~~~~~  205 (279)
T PRK13635        147 QRVAIAGVLALQPDIIILDEATSMLDPRGRREVLETVRQLKE-QKGITVLSITHDLDEAA  205 (279)
T ss_pred             HHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHH-cCCCEEEEEecCHHHHH
Confidence            34457778888899999998732      2333343333321 13688999999987665

>COG2607 Predicted ATPase (AAA+ superfamily) [General function prediction only]

Probab=98.29  E-value=1.8e-05  Score=59.94  Aligned_cols=61  Identities=26%  Similarity=0.255  Sum_probs=45.2

Q ss_pred             CCCcccccccchhHHHHHHHHHh--cCCCCeeEEEEEecCCCcHHHHHHHHHHHhcCCCCceE
Q 039455           21 FPSAVDGLVGIASRMEKMNGYLE--AGLDDVRFIGICGMGGIGKTTLAKVLYNTLKDQFEASS   81 (216)
Q Consensus        21 ~~~~~~~~vgR~~~~~~l~~~l~--~~~~~~~~i~I~G~~GiGKTtL~~~~~~~~~~~~~~~~   81 (216)
                      ++.....++|-+...+.|.+.-.  ..+.....|.++|..|+|||+|++++.+.+.......+
T Consensus        55 ~~i~L~~l~Gvd~qk~~L~~NT~~F~~G~pANnVLLwGaRGtGKSSLVKA~~~e~~~~glrLV  117 (287)
T COG2607          55 DPIDLADLVGVDRQKEALVRNTEQFAEGLPANNVLLWGARGTGKSSLVKALLNEYADEGLRLV  117 (287)
T ss_pred             CCcCHHHHhCchHHHHHHHHHHHHHHcCCcccceEEecCCCCChHHHHHHHHHHHHhcCCeEE
Confidence            33445678999999999877532  11233468999999999999999999998876655433

>KOG0728 consensus 26S proteasome regulatory complex, ATPase RPT6 [Posttranslational modification, protein turnover, chaperones]

Probab=98.29  E-value=3.9e-05  Score=58.55  Aligned_cols=154  Identities=14%  Similarity=0.220  Sum_probs=91.4

Q ss_pred             cccccccc-hhHHHHHHHHHhcC-----------CCCeeEEEEEecCCCcHHHHHHHHHHHhcCCCCceEeecccccccc
Q 039455           24 AVDGLVGI-ASRMEKMNGYLEAG-----------LDDVRFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLANVREVSV   91 (216)
Q Consensus        24 ~~~~~vgR-~~~~~~l~~~l~~~-----------~~~~~~i~I~G~~GiGKTtL~~~~~~~~~~~~~~~~~~~~~~~~~~   91 (216)
                      +..+.+|+ +..+++|...+..+           -.+.+-+.++||+|.|||-||+.+++.-     ...|+. .+.   
T Consensus       144 StYeMiGgLd~QIkeIkEVIeLPvKHPELF~aLGIaQPKGvlLygppgtGktLlaraVahht-----~c~fir-vsg---  214 (404)
T KOG0728|consen  144 STYEMIGGLDKQIKEIKEVIELPVKHPELFEALGIAQPKGVLLYGPPGTGKTLLARAVAHHT-----DCTFIR-VSG---  214 (404)
T ss_pred             cHHHHhccHHHHHHHHHHHHhccccCHHHHHhcCCCCCcceEEecCCCCchhHHHHHHHhhc-----ceEEEE-ech---
Confidence            34455554 56677777765422           1356789999999999999999998743     222332 111   


Q ss_pred             ccCchHHHHHHHHHHHhhccccccchhhhHHHHHHHhCCceEEEEEeCCCCH------------HH----HHHhhcCCCC
Q 039455           92 TRGLVPLQEQLLSEVLMERNLIIWDVHKGINLIRWRLCRKRVLVVLDDVDQL------------EQ----LQALAGNHDW  155 (216)
Q Consensus        92 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~llvlDd~~~~------------~~----~~~l~~~~~~  155 (216)
                          .++.+.+.    +.      ......+.+...-+.-+.+|+.|++++.            .+    +-.++..+.-
T Consensus       215 ----selvqk~i----ge------gsrmvrelfvmarehapsiifmdeidsigs~r~e~~~ggdsevqrtmlellnqldg  280 (404)
T KOG0728|consen  215 ----SELVQKYI----GE------GSRMVRELFVMAREHAPSIIFMDEIDSIGSSRVESGSGGDSEVQRTMLELLNQLDG  280 (404)
T ss_pred             ----HHHHHHHh----hh------hHHHHHHHHHHHHhcCCceEeeecccccccccccCCCCccHHHHHHHHHHHHhccc
Confidence                11222221    11      1223344445455567889999998754            11    2223333221


Q ss_pred             --CCCCcEEEEEeCCchhhhc-----cCCcceEEecCCChHHHHHHHhhhhc
Q 039455          156 --FGFGSRIIITTRDEHVLKG-----HGVTNIYKVRGLDYVEALQLFHLKVS  200 (216)
Q Consensus       156 --~~~~~~il~tsr~~~~~~~-----~~~~~~~~l~~l~~~~~~~ll~~~~~  200 (216)
                        ..++.++|++|.-.++++.     -.-+..++++|-+.+...++++-+..
T Consensus       281 featknikvimatnridild~allrpgridrkiefp~p~e~ar~~ilkihsr  332 (404)
T KOG0728|consen  281 FEATKNIKVIMATNRIDILDPALLRPGRIDRKIEFPPPNEEARLDILKIHSR  332 (404)
T ss_pred             cccccceEEEEeccccccccHhhcCCCcccccccCCCCCHHHHHHHHHHhhh
Confidence              1356678887765544332     13578899999999999999876553

>PRK11308 dppF dipeptide transporter ATP-binding subunit; Provisional

Probab=98.29  E-value=3.9e-06  Score=67.77  Aligned_cols=56  Identities=18%  Similarity=0.113  Sum_probs=36.2

Q ss_pred             hhHHHHHHHhCCceEEEEEeCCCC------HHHHHHhhcCCCCCCCCcEEEEEeCCchhhhcc
Q 039455          119 KGINLIRWRLCRKRVLVVLDDVDQ------LEQLQALAGNHDWFGFGSRIIITTRDEHVLKGH  175 (216)
Q Consensus       119 ~~~~~l~~~l~~~~~llvlDd~~~------~~~~~~l~~~~~~~~~~~~il~tsr~~~~~~~~  175 (216)
                      .....+...+..++-+||+|+.-.      ...+..++..+.. ..+..+|++||+...+..+
T Consensus       160 ~QRv~iArAL~~~P~lLilDEPts~LD~~~~~~i~~lL~~l~~-~~g~til~iTHdl~~~~~~  221 (327)
T PRK11308        160 RQRIAIARALMLDPDVVVADEPVSALDVSVQAQVLNLMMDLQQ-ELGLSYVFISHDLSVVEHI  221 (327)
T ss_pred             HHHHHHHHHHHcCCCEEEEECCCccCCHHHHHHHHHHHHHHHH-HcCCEEEEEeCCHHHHHHh
Confidence            344467888888999999998732      1233333333221 2367899999998776553

>PRK14268 phosphate ABC transporter ATP-binding protein; Provisional

Probab=98.29  E-value=5.5e-06  Score=64.70  Aligned_cols=59  Identities=15%  Similarity=0.079  Sum_probs=37.5

Q ss_pred             HHHHHHHhCCceEEEEEeCCCC------HHHHHHhhcCCCCCCCCcEEEEEeCCchhhhccCCcceEEe
Q 039455          121 INLIRWRLCRKRVLVVLDDVDQ------LEQLQALAGNHDWFGFGSRIIITTRDEHVLKGHGVTNIYKV  183 (216)
Q Consensus       121 ~~~l~~~l~~~~~llvlDd~~~------~~~~~~l~~~~~~~~~~~~il~tsr~~~~~~~~~~~~~~~l  183 (216)
                      .-.+...+..++-++++|+.-+      ...+..++..+.   .+..||++||+.+....+ +++.+.+
T Consensus       162 rv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~---~~~tiiivsH~~~~~~~~-~d~i~~l  226 (258)
T PRK14268        162 RLCIARTLAVKPKIILFDEPTSALDPISTARIEDLIMNLK---KDYTIVIVTHNMQQAARI-SDYTGFF  226 (258)
T ss_pred             HHHHHHHHHcCCCEEEEeCCCcccCHHHHHHHHHHHHHHh---hCCEEEEEECCHHHHHHh-CCEEEEE
Confidence            3457777778889999998732      233444444332   257899999998776554 3444333

>PRK13634 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=98.29  E-value=4e-06  Score=66.64  Aligned_cols=55  Identities=13%  Similarity=0.019  Sum_probs=35.6

Q ss_pred             hHHHHHHHhCCceEEEEEeCCCC------HHHHHHhhcCCCCCCCCcEEEEEeCCchhhhcc
Q 039455          120 GINLIRWRLCRKRVLVVLDDVDQ------LEQLQALAGNHDWFGFGSRIIITTRDEHVLKGH  175 (216)
Q Consensus       120 ~~~~l~~~l~~~~~llvlDd~~~------~~~~~~l~~~~~~~~~~~~il~tsr~~~~~~~~  175 (216)
                      ..-.+...+..++-++++|+..+      ...+..++..+.. ..+.+||++||+.+.+..+
T Consensus       152 qrv~lAraL~~~P~llllDEPt~~LD~~~~~~l~~~L~~l~~-~~g~tviiitHd~~~~~~~  212 (290)
T PRK13634        152 RRVAIAGVLAMEPEVLVLDEPTAGLDPKGRKEMMEMFYKLHK-EKGLTTVLVTHSMEDAARY  212 (290)
T ss_pred             HHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHH-hcCCEEEEEeCCHHHHHHh
Confidence            34457888888999999998842      2333343333321 2367899999998765543

>PRK11608 pspF phage shock protein operon transcriptional activator; Provisional

Probab=98.29  E-value=7.6e-06  Score=66.07  Aligned_cols=47  Identities=23%  Similarity=0.166  Sum_probs=39.5

Q ss_pred             cccccchhHHHHHHHHHhcCCCCeeEEEEEecCCCcHHHHHHHHHHH
Q 039455           26 DGLVGIASRMEKMNGYLEAGLDDVRFIGICGMGGIGKTTLAKVLYNT   72 (216)
Q Consensus        26 ~~~vgR~~~~~~l~~~l~~~~~~~~~i~I~G~~GiGKTtL~~~~~~~   72 (216)
                      ..++|++..++.+.+.+..-......|.|+|++|+||+++|+.+...
T Consensus         6 ~~liG~S~~~~~~~~~i~~~a~~~~pVlI~GE~GtGK~~lA~~iH~~   52 (326)
T PRK11608          6 DNLLGEANSFLEVLEQVSRLAPLDKPVLIIGERGTGKELIASRLHYL   52 (326)
T ss_pred             CccEECCHHHHHHHHHHHHHhCCCCCEEEECCCCCcHHHHHHHHHHh
Confidence            35899999999998887754455678999999999999999988753

>COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism]

Probab=98.29  E-value=1.8e-05  Score=57.54  Aligned_cols=127  Identities=16%  Similarity=0.129  Sum_probs=70.6

Q ss_pred             CCeeEEEEEecCCCcHHHHHHHHHHHhcCCCCceEeeccccccc------------cc------------------cCc-
Q 039455           47 DDVRFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLANVREVS------------VT------------------RGL-   95 (216)
Q Consensus        47 ~~~~~i~I~G~~GiGKTtL~~~~~~~~~~~~~~~~~~~~~~~~~------------~~------------------~~~-   95 (216)
                      +.+..++|.||+|+|||||+..+++..... ...+|+.......            .+                  +++ 
T Consensus        23 ~~ge~vAi~GpSGaGKSTLLnLIAGF~~P~-~G~i~i~g~d~t~~~P~~RPVSmlFQEnNLFaHLtV~qNigLGl~P~Lk  101 (231)
T COG3840          23 PAGEIVAILGPSGAGKSTLLNLIAGFETPA-SGEILINGVDHTASPPAERPVSMLFQENNLFAHLTVAQNIGLGLSPGLK  101 (231)
T ss_pred             cCCcEEEEECCCCccHHHHHHHHHhccCCC-CceEEEcCeecCcCCcccCChhhhhhccccchhhhhhhhhcccCCcccc
Confidence            346799999999999999999999854332 3344442111000            00                  000 


Q ss_pred             -----hHHHHHHHHHH-----HhhccccccchhhhHHHHHHHhCCceEEEEEeCCCCH------HHHHHhhcCCCCCCCC
Q 039455           96 -----VPLQEQLLSEV-----LMERNLIIWDVHKGINLIRWRLCRKRVLVVLDDVDQL------EQLQALAGNHDWFGFG  159 (216)
Q Consensus        96 -----~~~~~~l~~~~-----~~~~~~~~~~~~~~~~~l~~~l~~~~~llvlDd~~~~------~~~~~l~~~~~~~~~~  159 (216)
                           ......++.++     ....+...+..+.....+.+++-..+-++.||+.-+.      .++-.+...+. ...+
T Consensus       102 L~a~~r~~v~~aa~~vGl~~~~~RLP~~LSGGqRQRvALARclvR~~PilLLDEPFsALdP~LR~eMl~Lv~~l~-~E~~  180 (231)
T COG3840         102 LNAEQREKVEAAAAQVGLAGFLKRLPGELSGGQRQRVALARCLVREQPILLLDEPFSALDPALRAEMLALVSQLC-DERK  180 (231)
T ss_pred             cCHHHHHHHHHHHHHhChhhHhhhCccccCchHHHHHHHHHHHhccCCeEEecCchhhcCHHHHHHHHHHHHHHH-HhhC
Confidence                 01112222222     1222233444555666788888777778889987432      23333333221 1356


Q ss_pred             cEEEEEeCCchhhhcc
Q 039455          160 SRIIITTRDEHVLKGH  175 (216)
Q Consensus       160 ~~il~tsr~~~~~~~~  175 (216)
                      .++++.||.++-+..+
T Consensus       181 ~TllmVTH~~~Da~~i  196 (231)
T COG3840         181 MTLLMVTHHPEDAARI  196 (231)
T ss_pred             CEEEEEeCCHHHHHHh
Confidence            7899999987665554

>PRK09361 radB DNA repair and recombination protein RadB; Provisional

Probab=98.29  E-value=5.2e-06  Score=63.45  Aligned_cols=48  Identities=19%  Similarity=0.254  Sum_probs=37.7

Q ss_pred             HHHHHHhcCCCCeeEEEEEecCCCcHHHHHHHHHHHhcCCCCceEeec
Q 039455           37 KMNGYLEAGLDDVRFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLA   84 (216)
Q Consensus        37 ~l~~~l~~~~~~~~~i~I~G~~GiGKTtL~~~~~~~~~~~~~~~~~~~   84 (216)
                      .|...|..+-+.+.++.|+|++|+|||+++.+++.........+.|++
T Consensus        11 ~lD~~l~GGi~~g~i~~i~G~~GsGKT~l~~~la~~~~~~~~~v~yi~   58 (225)
T PRK09361         11 MLDELLGGGFERGTITQIYGPPGSGKTNICLQLAVEAAKNGKKVIYID   58 (225)
T ss_pred             HHHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEE
Confidence            355555555567799999999999999999999986655556778876

>cd03234 ABCG_White The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors

Probab=98.29  E-value=7.4e-06  Score=62.69  Aligned_cols=28  Identities=29%  Similarity=0.474  Sum_probs=24.7

Q ss_pred             CCeeEEEEEecCCCcHHHHHHHHHHHhc
Q 039455           47 DDVRFIGICGMGGIGKTTLAKVLYNTLK   74 (216)
Q Consensus        47 ~~~~~i~I~G~~GiGKTtL~~~~~~~~~   74 (216)
                      ..+..++|+|++|+|||||++.+++...
T Consensus        31 ~~Ge~~~l~G~nGsGKSTLlk~l~G~~~   58 (226)
T cd03234          31 ESGQVMAILGSSGSGKTTLLDAISGRVE   58 (226)
T ss_pred             cCCeEEEEECCCCCCHHHHHHHHhCccC
Confidence            4568999999999999999999998654

The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in

>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional

Probab=98.29  E-value=2e-05  Score=70.09  Aligned_cols=49  Identities=20%  Similarity=0.235  Sum_probs=38.5

Q ss_pred             cccccchhHHHHHHHHHhcC-------CCCeeEEEEEecCCCcHHHHHHHHHHHhc
Q 039455           26 DGLVGIASRMEKMNGYLEAG-------LDDVRFIGICGMGGIGKTTLAKVLYNTLK   74 (216)
Q Consensus        26 ~~~vgR~~~~~~l~~~l~~~-------~~~~~~i~I~G~~GiGKTtL~~~~~~~~~   74 (216)
                      ..++|.++.++.+...+...       ......+.++||+|+|||.+|+.++..+.
T Consensus       458 ~~ViGQ~~ai~~l~~~i~~~~~gl~~~~kp~~~~Lf~GP~GvGKT~lAk~LA~~l~  513 (758)
T PRK11034        458 MLVFGQDKAIEALTEAIKMSRAGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSKALG  513 (758)
T ss_pred             ceEeCcHHHHHHHHHHHHHHhccccCCCCCcceEEEECCCCCCHHHHHHHHHHHhC
Confidence            45799999999888876521       11235789999999999999999998773

>PRK11819 putative ABC transporter ATP-binding protein; Reviewed

Probab=98.28  E-value=6.2e-06  Score=71.41  Aligned_cols=59  Identities=17%  Similarity=0.189  Sum_probs=39.8

Q ss_pred             hHHHHHHHhCCceEEEEEeCCC------CHHHHHHhhcCCCCCCCCcEEEEEeCCchhhhccCCcceEEec
Q 039455          120 GINLIRWRLCRKRVLVVLDDVD------QLEQLQALAGNHDWFGFGSRIIITTRDEHVLKGHGVTNIYKVR  184 (216)
Q Consensus       120 ~~~~l~~~l~~~~~llvlDd~~------~~~~~~~l~~~~~~~~~~~~il~tsr~~~~~~~~~~~~~~~l~  184 (216)
                      ..-.+...+..++-++++|+.-      +.+.+..++..+.    + .+|++||+.+.+..+ ++..+.+.
T Consensus       452 qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~----~-tvi~vtHd~~~~~~~-~d~i~~l~  516 (556)
T PRK11819        452 NRLHLAKTLKQGGNVLLLDEPTNDLDVETLRALEEALLEFP----G-CAVVISHDRWFLDRI-ATHILAFE  516 (556)
T ss_pred             HHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHhCC----C-eEEEEECCHHHHHHh-CCEEEEEE
Confidence            3445777888899999999773      2344555555442    3 689999998877665 44555554

>COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]

Probab=98.28  E-value=4.5e-06  Score=73.51  Aligned_cols=29  Identities=34%  Similarity=0.430  Sum_probs=24.6

Q ss_pred             CCeeEEEEEecCCCcHHHHHHHHHHHhcC
Q 039455           47 DDVRFIGICGMGGIGKTTLAKVLYNTLKD   75 (216)
Q Consensus        47 ~~~~~i~I~G~~GiGKTtL~~~~~~~~~~   75 (216)
                      +.+..++|+|.+|+|||||++.+.+.+..
T Consensus       497 ~~Ge~vaIvG~SGsGKSTL~KLL~gly~p  525 (709)
T COG2274         497 PPGEKVAIVGRSGSGKSTLLKLLLGLYKP  525 (709)
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhcCCCC
Confidence            34579999999999999999999985543

>PRK14274 phosphate ABC transporter ATP-binding protein; Provisional

Probab=98.28  E-value=6.1e-06  Score=64.49  Aligned_cols=59  Identities=12%  Similarity=0.053  Sum_probs=37.4

Q ss_pred             HHHHHHHhCCceEEEEEeCCC------CHHHHHHhhcCCCCCCCCcEEEEEeCCchhhhccCCcceEEe
Q 039455          121 INLIRWRLCRKRVLVVLDDVD------QLEQLQALAGNHDWFGFGSRIIITTRDEHVLKGHGVTNIYKV  183 (216)
Q Consensus       121 ~~~l~~~l~~~~~llvlDd~~------~~~~~~~l~~~~~~~~~~~~il~tsr~~~~~~~~~~~~~~~l  183 (216)
                      ...+...+..++-++++|+..      ....+..++..+.   .+..+|++||+.+....+ +++.+.+
T Consensus       163 rv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~---~~~tiiivtH~~~~~~~~-~d~i~~l  227 (259)
T PRK14274        163 RLCIARALATNPDVLLMDEPTSALDPVSTRKIEELILKLK---EKYTIVIVTHNMQQAARV-SDQTAFF  227 (259)
T ss_pred             HHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHh---cCCEEEEEEcCHHHHHHh-CCEEEEE
Confidence            345677777888899999773      2234444444443   246799999988765544 3444444

>cd03291 ABCC_CFTR1 The CFTR subfamily domain 1

Probab=98.28  E-value=1.1e-05  Score=63.87  Aligned_cols=28  Identities=29%  Similarity=0.512  Sum_probs=24.7

Q ss_pred             CCeeEEEEEecCCCcHHHHHHHHHHHhc
Q 039455           47 DDVRFIGICGMGGIGKTTLAKVLYNTLK   74 (216)
Q Consensus        47 ~~~~~i~I~G~~GiGKTtL~~~~~~~~~   74 (216)
                      ..+..++|.|++|+|||||++.+++.+.
T Consensus        61 ~~Ge~~~liG~NGsGKSTLl~~I~Gl~~   88 (282)
T cd03291          61 EKGEMLAITGSTGSGKTSLLMLILGELE   88 (282)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence            4568999999999999999999998654

The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits, or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.

>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein

Probab=98.28  E-value=3.1e-06  Score=72.37  Aligned_cols=55  Identities=16%  Similarity=0.215  Sum_probs=37.1

Q ss_pred             hhHHHHHHHhCCceEEEEEeCCC------CHHHHHHhhcCCCCCCCCcEEEEEeCCchhhhcc
Q 039455          119 KGINLIRWRLCRKRVLVVLDDVD------QLEQLQALAGNHDWFGFGSRIIITTRDEHVLKGH  175 (216)
Q Consensus       119 ~~~~~l~~~l~~~~~llvlDd~~------~~~~~~~l~~~~~~~~~~~~il~tsr~~~~~~~~  175 (216)
                      ...-.+...+..++-++++|+.-      ....+..++..+.  ..+..||++||+.+.+..+
T Consensus       147 ~qrv~iA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~--~~g~tviiitHd~~~~~~~  207 (500)
T TIGR02633       147 QQLVEIAKALNKQARLLILDEPSSSLTEKETEILLDIIRDLK--AHGVACVYISHKLNEVKAV  207 (500)
T ss_pred             HHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHH--hCCCEEEEEeCcHHHHHHh
Confidence            33445777888889999999773      2234444444443  3467899999998776554

Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).

>PRK14243 phosphate transporter ATP-binding protein; Provisional

Probab=98.28  E-value=1.4e-05  Score=62.73  Aligned_cols=60  Identities=12%  Similarity=0.026  Sum_probs=38.9

Q ss_pred             HHHHHHHhCCceEEEEEeCCC------CHHHHHHhhcCCCCCCCCcEEEEEeCCchhhhccCCcceEEec
Q 039455          121 INLIRWRLCRKRVLVVLDDVD------QLEQLQALAGNHDWFGFGSRIIITTRDEHVLKGHGVTNIYKVR  184 (216)
Q Consensus       121 ~~~l~~~l~~~~~llvlDd~~------~~~~~~~l~~~~~~~~~~~~il~tsr~~~~~~~~~~~~~~~l~  184 (216)
                      .-.+...+..++-++++|+..      ..+.+..++..+.   .+..||++||+.+....+ +++.+.++
T Consensus       159 rv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~---~~~tvi~vtH~~~~~~~~-~d~v~~l~  224 (264)
T PRK14243        159 RLCIARAIAVQPEVILMDEPCSALDPISTLRIEELMHELK---EQYTIIIVTHNMQQAARV-SDMTAFFN  224 (264)
T ss_pred             HHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHh---cCCEEEEEecCHHHHHHh-CCEEEEEe
Confidence            445677777888899999873      2244445444443   236899999998776655 45555553

>PRK14255 phosphate ABC transporter ATP-binding protein; Provisional

Probab=98.28  E-value=7.6e-06  Score=63.66  Aligned_cols=59  Identities=17%  Similarity=0.067  Sum_probs=37.1

Q ss_pred             HHHHHHHhCCceEEEEEeCCCC------HHHHHHhhcCCCCCCCCcEEEEEeCCchhhhccCCcceEEe
Q 039455          121 INLIRWRLCRKRVLVVLDDVDQ------LEQLQALAGNHDWFGFGSRIIITTRDEHVLKGHGVTNIYKV  183 (216)
Q Consensus       121 ~~~l~~~l~~~~~llvlDd~~~------~~~~~~l~~~~~~~~~~~~il~tsr~~~~~~~~~~~~~~~l  183 (216)
                      ...+...+..++-++++|+.-+      ...+..++..+.   .+..+|++||+.+....+ ++..+.+
T Consensus       156 rv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~---~~~tii~vsH~~~~~~~~-~d~i~~l  220 (252)
T PRK14255        156 RVCIARVLAVKPDVILLDEPTSALDPISSTQIENMLLELR---DQYTIILVTHSMHQASRI-SDKTAFF  220 (252)
T ss_pred             HHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHH---hCCEEEEEECCHHHHHHh-CCEEEEE
Confidence            4457777788889999998732      233444444332   236799999998776554 3344333

>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]

Probab=98.28  E-value=2.5e-05  Score=68.74  Aligned_cols=162  Identities=17%  Similarity=0.153  Sum_probs=92.4

Q ss_pred             cccccchhHHHHHHHHHh-------cCCCCeeEEEEEecCCCcHHHHHHHHHHHhcCCCCceEeeccccccccccCchHH
Q 039455           26 DGLVGIASRMEKMNGYLE-------AGLDDVRFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLANVREVSVTRGLVPL   98 (216)
Q Consensus        26 ~~~vgR~~~~~~l~~~l~-------~~~~~~~~i~I~G~~GiGKTtL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   98 (216)
                      ...+|.++.+..+.+.+.       .+..-..+..+.||.|+|||-||+.++..+-..-...+-++ ++...+.      
T Consensus       491 ~rViGQd~AV~avs~aIrraRaGL~dp~rPigsFlF~GPTGVGKTELAkaLA~~Lfg~e~aliR~D-MSEy~Ek------  563 (786)
T COG0542         491 KRVIGQDEAVEAVSDAIRRARAGLGDPNRPIGSFLFLGPTGVGKTELAKALAEALFGDEQALIRID-MSEYMEK------  563 (786)
T ss_pred             cceeChHHHHHHHHHHHHHHhcCCCCCCCCceEEEeeCCCcccHHHHHHHHHHHhcCCCccceeec-hHHHHHH------
Confidence            467999999988877654       12233468889999999999999999997743212222222 3321111      


Q ss_pred             HHHHHHHHHhhccccccchhhhHHHHHHHhCCceE-EEEEeCCCC--HHHHHHhhcCCCCC-----------CCCcEEEE
Q 039455           99 QEQLLSEVLMERNLIIWDVHKGINLIRWRLCRKRV-LVVLDDVDQ--LEQLQALAGNHDWF-----------GFGSRIII  164 (216)
Q Consensus        99 ~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~-llvlDd~~~--~~~~~~l~~~~~~~-----------~~~~~il~  164 (216)
                        --.+.+.+..+ .....+. -..+-.....+|| +|+||+++.  .+-+.-|+..+.+-           ..++-||+
T Consensus       564 --HsVSrLIGaPP-GYVGyee-GG~LTEaVRr~PySViLlDEIEKAHpdV~nilLQVlDdGrLTD~~Gr~VdFrNtiIIm  639 (786)
T COG0542         564 --HSVSRLIGAPP-GYVGYEE-GGQLTEAVRRKPYSVILLDEIEKAHPDVFNLLLQVLDDGRLTDGQGRTVDFRNTIIIM  639 (786)
T ss_pred             --HHHHHHhCCCC-CCceecc-ccchhHhhhcCCCeEEEechhhhcCHHHHHHHHHHhcCCeeecCCCCEEecceeEEEE
Confidence              12233333332 2222222 3445556667877 888999963  34444444443311           13456677


Q ss_pred             EeCCchh--hhc-----------------------c-----C-CcceEEecCCChHHHHHHHhhh
Q 039455          165 TTRDEHV--LKG-----------------------H-----G-VTNIYKVRGLDYVEALQLFHLK  198 (216)
Q Consensus       165 tsr~~~~--~~~-----------------------~-----~-~~~~~~l~~l~~~~~~~ll~~~  198 (216)
                      ||....-  ...                       +     + .+..+...||+.+...+++...
T Consensus       640 TSN~Gs~~i~~~~~~~~~~~~~~~~~~v~~~l~~~F~PEFLNRid~II~F~~L~~~~l~~Iv~~~  704 (786)
T COG0542         640 TSNAGSEEILRDADGDDFADKEALKEAVMEELKKHFRPEFLNRIDEIIPFNPLSKEVLERIVDLQ  704 (786)
T ss_pred             ecccchHHHHhhccccccchhhhHHHHHHHHHHhhCCHHHHhhcccEEeccCCCHHHHHHHHHHH
Confidence            8764210  000                       0     0 2457888888887777776543

>PRK14241 phosphate transporter ATP-binding protein; Provisional

Probab=98.28  E-value=8.5e-06  Score=63.63  Aligned_cols=28  Identities=21%  Similarity=0.341  Sum_probs=24.5

Q ss_pred             CCeeEEEEEecCCCcHHHHHHHHHHHhc
Q 039455           47 DDVRFIGICGMGGIGKTTLAKVLYNTLK   74 (216)
Q Consensus        47 ~~~~~i~I~G~~GiGKTtL~~~~~~~~~   74 (216)
                      ..+.+++|.|++|+|||||++.+++...
T Consensus        28 ~~Ge~~~i~G~nGsGKSTLl~~laGl~~   55 (258)
T PRK14241         28 EPRSVTAFIGPSGCGKSTVLRTLNRMHE   55 (258)
T ss_pred             cCCcEEEEECCCCCCHHHHHHHHhccCC
Confidence            3468999999999999999999998654

>PRK14270 phosphate ABC transporter ATP-binding protein; Provisional

Probab=98.27  E-value=5.8e-06  Score=64.30  Aligned_cols=28  Identities=21%  Similarity=0.361  Sum_probs=24.4

Q ss_pred             CCeeEEEEEecCCCcHHHHHHHHHHHhc
Q 039455           47 DDVRFIGICGMGGIGKTTLAKVLYNTLK   74 (216)
Q Consensus        47 ~~~~~i~I~G~~GiGKTtL~~~~~~~~~   74 (216)
                      ..+.+++|.|++|+|||||++.+++...
T Consensus        28 ~~Ge~~~i~G~nGsGKSTLl~~l~G~~~   55 (251)
T PRK14270         28 YENKITALIGPSGCGKSTFLRCLNRMND   55 (251)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHHhccC
Confidence            3568999999999999999999998543

>PF03215 Rad17: Rad17 cell cycle checkpoint protein

Probab=98.27  E-value=9.1e-06  Score=69.21  Aligned_cols=60  Identities=32%  Similarity=0.487  Sum_probs=47.2

Q ss_pred             CCcccccccchhHHHHHHHHHhcC---CCCeeEEEEEecCCCcHHHHHHHHHHHhcCCCCceEee
Q 039455           22 PSAVDGLVGIASRMEKMNGYLEAG---LDDVRFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFL   83 (216)
Q Consensus        22 ~~~~~~~vgR~~~~~~l~~~l~~~---~~~~~~i~I~G~~GiGKTtL~~~~~~~~~~~~~~~~~~   83 (216)
                      |....++.-....++++..||...   ....++++|+||+|+||||+++.++..+.  +...-|.
T Consensus        15 P~~~~eLavhkkKv~eV~~wl~~~~~~~~~~~iLlLtGP~G~GKtttv~~La~elg--~~v~Ew~   77 (519)
T PF03215_consen   15 PKTLDELAVHKKKVEEVRSWLEEMFSGSSPKRILLLTGPSGCGKTTTVKVLAKELG--FEVQEWI   77 (519)
T ss_pred             CCCHHHhhccHHHHHHHHHHHHHHhccCCCcceEEEECCCCCCHHHHHHHHHHHhC--CeeEEec
Confidence            555667788888999999998743   33457999999999999999999998763  5556665

>PRK13640 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=98.27  E-value=2.5e-06  Score=67.52  Aligned_cols=28  Identities=25%  Similarity=0.433  Sum_probs=24.6

Q ss_pred             CCeeEEEEEecCCCcHHHHHHHHHHHhc
Q 039455           47 DDVRFIGICGMGGIGKTTLAKVLYNTLK   74 (216)
Q Consensus        47 ~~~~~i~I~G~~GiGKTtL~~~~~~~~~   74 (216)
                      ..+..++|.|++|+|||||++.+++.+.
T Consensus        31 ~~Ge~~~I~G~nGaGKSTLl~~l~G~~~   58 (282)
T PRK13640         31 PRGSWTALIGHNGSGKSTISKLINGLLL   58 (282)
T ss_pred             cCCCEEEEECCCCCcHHHHHHHHhcccC
Confidence            3468999999999999999999998654

>COG4615 PvdE ABC-type siderophore export system, fused ATPase and permease components [Secondary metabolites biosynthesis, transport, and catabolism / Inorganic ion transport and metabolism]

Probab=98.27  E-value=2.8e-06  Score=68.64  Aligned_cols=36  Identities=25%  Similarity=0.210  Sum_probs=29.3

Q ss_pred             CeeEEEEEecCCCcHHHHHHHHHHHhcCCCCceEee
Q 039455           48 DVRFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFL   83 (216)
Q Consensus        48 ~~~~i~I~G~~GiGKTtL~~~~~~~~~~~~~~~~~~   83 (216)
                      ++..+.|+|.+|+||||+++-+-+-++.+.....|=
T Consensus       348 rGelvFliG~NGsGKST~~~LLtGL~~PqsG~I~ld  383 (546)
T COG4615         348 RGELVFLIGGNGSGKSTLAMLLTGLYQPQSGEILLD  383 (546)
T ss_pred             cCcEEEEECCCCCcHHHHHHHHhcccCCCCCceeEC
Confidence            467999999999999999999988777665555553

>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins

Probab=98.27  E-value=1.2e-05  Score=63.30  Aligned_cols=106  Identities=14%  Similarity=0.098  Sum_probs=66.8

Q ss_pred             HHHHHHHHHhcC-CCCeeEEEEEecCCCcHHHHHHHHHHHhcCCCC-----ceEeeccccccccccCchHHHHHHHHHHH
Q 039455           34 RMEKMNGYLEAG-LDDVRFIGICGMGGIGKTTLAKVLYNTLKDQFE-----ASSFLANVREVSVTRGLVPLQEQLLSEVL  107 (216)
Q Consensus        34 ~~~~l~~~l~~~-~~~~~~i~I~G~~GiGKTtL~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~l~~~~~  107 (216)
                      .++.|..++..+ ...-+.+.|+|++|.|||++++.+....-..++     ..+++.   ......+...+...++..+.
T Consensus        45 ~L~~L~~Ll~~P~~~Rmp~lLivG~snnGKT~Ii~rF~~~hp~~~d~~~~~~PVv~v---q~P~~p~~~~~Y~~IL~~lg  121 (302)
T PF05621_consen   45 ALDRLEELLEYPKRHRMPNLLIVGDSNNGKTMIIERFRRLHPPQSDEDAERIPVVYV---QMPPEPDERRFYSAILEALG  121 (302)
T ss_pred             HHHHHHHHHhCCcccCCCceEEecCCCCcHHHHHHHHHHHCCCCCCCCCccccEEEE---ecCCCCChHHHHHHHHHHhC
Confidence            444566666654 444579999999999999999999975432221     112211   13335667778888888877


Q ss_pred             hhccccccchhhhHHHHHHHhCC-ceEEEEEeCCCCH
Q 039455          108 MERNLIIWDVHKGINLIRWRLCR-KRVLVVLDDVDQL  143 (216)
Q Consensus       108 ~~~~~~~~~~~~~~~~l~~~l~~-~~~llvlDd~~~~  143 (216)
                      ...... .+...+.......+.. +.-+||||++.+.
T Consensus       122 aP~~~~-~~~~~~~~~~~~llr~~~vrmLIIDE~H~l  157 (302)
T PF05621_consen  122 APYRPR-DRVAKLEQQVLRLLRRLGVRMLIIDEFHNL  157 (302)
T ss_pred             cccCCC-CCHHHHHHHHHHHHHHcCCcEEEeechHHH
Confidence            664332 3334444444455543 5669999999653

TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].

>PRK14256 phosphate ABC transporter ATP-binding protein; Provisional

Probab=98.27  E-value=9.1e-06  Score=63.24  Aligned_cols=27  Identities=22%  Similarity=0.346  Sum_probs=24.0

Q ss_pred             CCeeEEEEEecCCCcHHHHHHHHHHHh
Q 039455           47 DDVRFIGICGMGGIGKTTLAKVLYNTL   73 (216)
Q Consensus        47 ~~~~~i~I~G~~GiGKTtL~~~~~~~~   73 (216)
                      ..+.+++|+|++|+|||||++.+++..
T Consensus        28 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~   54 (252)
T PRK14256         28 PENSVTAIIGPSGCGKSTVLRSINRMH   54 (252)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHHhcc
Confidence            346799999999999999999999865

>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit

Probab=98.27  E-value=3.5e-06  Score=72.52  Aligned_cols=28  Identities=32%  Similarity=0.367  Sum_probs=24.5

Q ss_pred             CCeeEEEEEecCCCcHHHHHHHHHHHhc
Q 039455           47 DDVRFIGICGMGGIGKTTLAKVLYNTLK   74 (216)
Q Consensus        47 ~~~~~i~I~G~~GiGKTtL~~~~~~~~~   74 (216)
                      +.+..++|+|++|+|||||++.+.+.+.
T Consensus       359 ~~G~~vaIvG~SGsGKSTLl~lL~g~~~  386 (529)
T TIGR02868       359 PPGERVAILGPSGSGKSTLLMLLTGLLD  386 (529)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence            4568999999999999999999987554

The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.

>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2

Probab=98.27  E-value=4.3e-06  Score=71.82  Aligned_cols=62  Identities=13%  Similarity=0.078  Sum_probs=39.7

Q ss_pred             HHHHHHHhCCceEEEEEeCCC------CHHHHHHhhcCCCCCCCCcEEEEEeCCchhhhccCCcceEEec
Q 039455          121 INLIRWRLCRKRVLVVLDDVD------QLEQLQALAGNHDWFGFGSRIIITTRDEHVLKGHGVTNIYKVR  184 (216)
Q Consensus       121 ~~~l~~~l~~~~~llvlDd~~------~~~~~~~l~~~~~~~~~~~~il~tsr~~~~~~~~~~~~~~~l~  184 (216)
                      .-.+...+..++-+|++|+.-      ....+..++..+.. ..+..||++||+.+.+..+ ++..+.+.
T Consensus       435 rv~laral~~~p~lLllDEPt~~LD~~~~~~l~~~l~~l~~-~~g~tvi~vsHd~~~~~~~-~d~i~~l~  502 (520)
T TIGR03269       435 RVALAQVLIKEPRIVILDEPTGTMDPITKVDVTHSILKARE-EMEQTFIIVSHDMDFVLDV-CDRAALMR  502 (520)
T ss_pred             HHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHH-HcCcEEEEEeCCHHHHHHh-CCEEEEEE
Confidence            445777888899999999873      22334444433221 2367899999998877665 44555543

The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.

>PRK14239 phosphate transporter ATP-binding protein; Provisional

Probab=98.27  E-value=6.4e-06  Score=64.06  Aligned_cols=59  Identities=10%  Similarity=0.021  Sum_probs=36.4

Q ss_pred             HHHHHHHhCCceEEEEEeCCCC------HHHHHHhhcCCCCCCCCcEEEEEeCCchhhhccCCcceEEe
Q 039455          121 INLIRWRLCRKRVLVVLDDVDQ------LEQLQALAGNHDWFGFGSRIIITTRDEHVLKGHGVTNIYKV  183 (216)
Q Consensus       121 ~~~l~~~l~~~~~llvlDd~~~------~~~~~~l~~~~~~~~~~~~il~tsr~~~~~~~~~~~~~~~l  183 (216)
                      .-.+...+..++-++++|+.-.      ...+..++..+.   .+..||++||+.+....+ ++..+.+
T Consensus       156 rv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~---~~~tii~~sH~~~~~~~~-~d~i~~l  220 (252)
T PRK14239        156 RVCIARVLATSPKIILLDEPTSALDPISAGKIEETLLGLK---DDYTMLLVTRSMQQASRI-SDRTGFF  220 (252)
T ss_pred             HHHHHHHHhcCCCEEEEcCCccccCHHHHHHHHHHHHHHh---hCCeEEEEECCHHHHHHh-CCEEEEE
Confidence            3356777778888999998732      234444444432   246799999998765443 3343333

>KOG0736 consensus Peroxisome assembly factor 2 containing the AAA+-type ATPase domain [Posttranslational modification, protein turnover, chaperones]

Probab=98.27  E-value=3e-05  Score=67.49  Aligned_cols=151  Identities=19%  Similarity=0.164  Sum_probs=83.0

Q ss_pred             CCccccccc-chhHHHHHHHHHh----------cCCCCeeEEEEEecCCCcHHHHHHHHHHHhcCCCCceEeeccccccc
Q 039455           22 PSAVDGLVG-IASRMEKMNGYLE----------AGLDDVRFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLANVREVS   90 (216)
Q Consensus        22 ~~~~~~~vg-R~~~~~~l~~~l~----------~~~~~~~~i~I~G~~GiGKTtL~~~~~~~~~~~~~~~~~~~~~~~~~   90 (216)
                      |...++=|| -++...+|.+-+.          .+-.+.+-|.++||+|+|||-||++++-++.-.|     ++.-    
T Consensus       667 PnV~WdDVGGLeevK~eIldTIqlPL~hpeLfssglrkRSGILLYGPPGTGKTLlAKAVATEcsL~F-----lSVK----  737 (953)
T KOG0736|consen  667 PNVSWDDVGGLEEVKTEILDTIQLPLKHPELFSSGLRKRSGILLYGPPGTGKTLLAKAVATECSLNF-----LSVK----  737 (953)
T ss_pred             CccchhcccCHHHHHHHHHHHhcCcccChhhhhccccccceeEEECCCCCchHHHHHHHHhhceeeE-----Eeec----
Confidence            334444444 4444445655443          2234478999999999999999999998765332     2211    


Q ss_pred             cccCchHHHHHHHHHHHhhccccccchhhhHHHHHHHhCCceEEEEEeCCCCH---------------HHHHHhhcCC--
Q 039455           91 VTRGLVPLQEQLLSEVLMERNLIIWDVHKGINLIRWRLCRKRVLVVLDDVDQL---------------EQLQALAGNH--  153 (216)
Q Consensus        91 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~llvlDd~~~~---------------~~~~~l~~~~--  153 (216)
                         +.     +++....++      +.+-..+-+.++-...||+|+||++|++               .-+.+++..+  
T Consensus       738 ---GP-----ELLNMYVGq------SE~NVR~VFerAR~A~PCVIFFDELDSlAP~RG~sGDSGGVMDRVVSQLLAELDg  803 (953)
T KOG0736|consen  738 ---GP-----ELLNMYVGQ------SEENVREVFERARSAAPCVIFFDELDSLAPNRGRSGDSGGVMDRVVSQLLAELDG  803 (953)
T ss_pred             ---CH-----HHHHHHhcc------hHHHHHHHHHHhhccCCeEEEeccccccCccCCCCCCccccHHHHHHHHHHHhhc
Confidence               11     222221111      1222344455555678999999999765               1234444333  


Q ss_pred             -CC-CCCCcEEEEEeCCchhhhc--c---CCcceEEecCCChHHHHHHH
Q 039455          154 -DW-FGFGSRIIITTRDEHVLKG--H---GVTNIYKVRGLDYVEALQLF  195 (216)
Q Consensus       154 -~~-~~~~~~il~tsr~~~~~~~--~---~~~~~~~l~~l~~~~~~~ll  195 (216)
                       .+ ...+..||-+|.-+++++.  +   ..+.-+.+.+=...+...=.
T Consensus       804 ls~~~s~~VFViGATNRPDLLDpALLRPGRFDKLvyvG~~~d~esk~~v  852 (953)
T KOG0736|consen  804 LSDSSSQDVFVIGATNRPDLLDPALLRPGRFDKLVYVGPNEDAESKLRV  852 (953)
T ss_pred             ccCCCCCceEEEecCCCccccChhhcCCCccceeEEecCCccHHHHHHH
Confidence             22 2234455556655555433  1   24566777776665554433

>PRK11176 lipid transporter ATP-binding/permease protein; Provisional

Probab=98.27  E-value=1.8e-06  Score=75.21  Aligned_cols=29  Identities=24%  Similarity=0.360  Sum_probs=24.8

Q ss_pred             CCeeEEEEEecCCCcHHHHHHHHHHHhcC
Q 039455           47 DDVRFIGICGMGGIGKTTLAKVLYNTLKD   75 (216)
Q Consensus        47 ~~~~~i~I~G~~GiGKTtL~~~~~~~~~~   75 (216)
                      +.+..++|+|++|+|||||++.+++.+..
T Consensus       367 ~~G~~~aIvG~sGsGKSTLl~ll~gl~~p  395 (582)
T PRK11176        367 PAGKTVALVGRSGSGKSTIANLLTRFYDI  395 (582)
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHHhccCC
Confidence            34678999999999999999999986543

>PRK04296 thymidine kinase; Provisional

Probab=98.26  E-value=2.4e-06  Score=63.60  Aligned_cols=113  Identities=19%  Similarity=0.134  Sum_probs=60.3

Q ss_pred             eeEEEEEecCCCcHHHHHHHHHHHhcCCCCceEeeccccccccccCchHHHHHHHHHHHhhcc-ccccchhhhHHHHHHH
Q 039455           49 VRFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLANVREVSVTRGLVPLQEQLLSEVLMERN-LIIWDVHKGINLIRWR  127 (216)
Q Consensus        49 ~~~i~I~G~~GiGKTtL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~~~~~~~~~~l~~~  127 (216)
                      +.+++++|+.|+||||++..++.+...+...+.++. . .........    .++..+..... ............+.. 
T Consensus         2 g~i~litG~~GsGKTT~~l~~~~~~~~~g~~v~i~k-~-~~d~~~~~~----~i~~~lg~~~~~~~~~~~~~~~~~~~~-   74 (190)
T PRK04296          2 AKLEFIYGAMNSGKSTELLQRAYNYEERGMKVLVFK-P-AIDDRYGEG----KVVSRIGLSREAIPVSSDTDIFELIEE-   74 (190)
T ss_pred             cEEEEEECCCCCHHHHHHHHHHHHHHHcCCeEEEEe-c-cccccccCC----cEecCCCCcccceEeCChHHHHHHHHh-
Confidence            368899999999999999999988765544444331 1 000011111    11111110000 001122222333333 


Q ss_pred             hCCceEEEEEeCCCCH--HHHHHhhcCCCCCCCCcEEEEEeCCch
Q 039455          128 LCRKRVLVVLDDVDQL--EQLQALAGNHDWFGFGSRIIITTRDEH  170 (216)
Q Consensus       128 l~~~~~llvlDd~~~~--~~~~~l~~~~~~~~~~~~il~tsr~~~  170 (216)
                      ..++.-+|++|++...  +++..+...+.  ..+..+++|.++..
T Consensus        75 ~~~~~dvviIDEaq~l~~~~v~~l~~~l~--~~g~~vi~tgl~~~  117 (190)
T PRK04296         75 EGEKIDCVLIDEAQFLDKEQVVQLAEVLD--DLGIPVICYGLDTD  117 (190)
T ss_pred             hCCCCCEEEEEccccCCHHHHHHHHHHHH--HcCCeEEEEecCcc
Confidence            2334568999999654  33554544433  46788999999844

>PRK13657 cyclic beta-1,2-glucan ABC transporter; Provisional

Probab=98.26  E-value=3e-06  Score=73.83  Aligned_cols=28  Identities=29%  Similarity=0.441  Sum_probs=24.3

Q ss_pred             CCeeEEEEEecCCCcHHHHHHHHHHHhc
Q 039455           47 DDVRFIGICGMGGIGKTTLAKVLYNTLK   74 (216)
Q Consensus        47 ~~~~~i~I~G~~GiGKTtL~~~~~~~~~   74 (216)
                      ..+..++|+|++|+|||||++.+.+.+.
T Consensus       359 ~~G~~v~IvG~sGsGKSTLl~lL~gl~~  386 (588)
T PRK13657        359 KPGQTVAIVGPTGAGKSTLINLLQRVFD  386 (588)
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhcCcC
Confidence            3568999999999999999999998654

>PRK10762 D-ribose transporter ATP binding protein; Provisional

Probab=98.26  E-value=3.8e-06  Score=71.80  Aligned_cols=54  Identities=17%  Similarity=0.221  Sum_probs=37.1

Q ss_pred             hHHHHHHHhCCceEEEEEeCCC------CHHHHHHhhcCCCCCCCCcEEEEEeCCchhhhcc
Q 039455          120 GINLIRWRLCRKRVLVVLDDVD------QLEQLQALAGNHDWFGFGSRIIITTRDEHVLKGH  175 (216)
Q Consensus       120 ~~~~l~~~l~~~~~llvlDd~~------~~~~~~~l~~~~~~~~~~~~il~tsr~~~~~~~~  175 (216)
                      ..-.+...+..++-++++|+.-      ....+..++..+.  ..+..+|++||+.+....+
T Consensus       402 qrv~lA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~--~~g~tviivtHd~~~~~~~  461 (501)
T PRK10762        402 QKVAIARGLMTRPKVLILDEPTRGVDVGAKKEIYQLINQFK--AEGLSIILVSSEMPEVLGM  461 (501)
T ss_pred             HHHHHHHHHhhCCCEEEEcCCCCCCCHhHHHHHHHHHHHHH--HCCCEEEEEcCCHHHHHhh
Confidence            3445777888889999999773      2344555554443  3467899999998776554

>cd03290 ABCC_SUR1_N The SUR domain 1

Probab=98.26  E-value=1.6e-05  Score=60.46  Aligned_cols=62  Identities=16%  Similarity=0.164  Sum_probs=39.4

Q ss_pred             hhHHHHHHHhCCceEEEEEeCCCC------HHHHHH--hhcCCCCCCCCcEEEEEeCCchhhhccCCcceEEec
Q 039455          119 KGINLIRWRLCRKRVLVVLDDVDQ------LEQLQA--LAGNHDWFGFGSRIIITTRDEHVLKGHGVTNIYKVR  184 (216)
Q Consensus       119 ~~~~~l~~~l~~~~~llvlDd~~~------~~~~~~--l~~~~~~~~~~~~il~tsr~~~~~~~~~~~~~~~l~  184 (216)
                      ...-.+...+..++-++++|+...      .+.+..  ++..+.  ..+..+|++||+..... . +++.+.+.
T Consensus       146 ~qrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~~ll~~~~--~~~~tii~~sH~~~~~~-~-~d~i~~l~  215 (218)
T cd03290         146 RQRICVARALYQNTNIVFLDDPFSALDIHLSDHLMQEGILKFLQ--DDKRTLVLVTHKLQYLP-H-ADWIIAMK  215 (218)
T ss_pred             HHHHHHHHHHhhCCCEEEEeCCccccCHHHHHHHHHHHHHHHHh--cCCCEEEEEeCChHHHh-h-CCEEEEec
Confidence            334457788888999999998732      222222  333332  34678999999987764 3 55655553

The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.

>PHA00729 NTP-binding motif containing protein

Probab=98.26  E-value=7.5e-06  Score=62.00  Aligned_cols=26  Identities=31%  Similarity=0.197  Sum_probs=23.0

Q ss_pred             eeEEEEEecCCCcHHHHHHHHHHHhc
Q 039455           49 VRFIGICGMGGIGKTTLAKVLYNTLK   74 (216)
Q Consensus        49 ~~~i~I~G~~GiGKTtL~~~~~~~~~   74 (216)
                      -..++|+|++|+||||||..++.++.
T Consensus        17 f~nIlItG~pGvGKT~LA~aLa~~l~   42 (226)
T PHA00729         17 FVSAVIFGKQGSGKTTYALKVARDVF   42 (226)
T ss_pred             eEEEEEECCCCCCHHHHHHHHHHHHH
Confidence            35799999999999999999998753

>PRK14260 phosphate ABC transporter ATP-binding protein; Provisional

Probab=98.26  E-value=1.3e-05  Score=62.59  Aligned_cols=59  Identities=14%  Similarity=0.001  Sum_probs=37.6

Q ss_pred             HHHHHHHhCCceEEEEEeCCC------CHHHHHHhhcCCCCCCCCcEEEEEeCCchhhhccCCcceEEe
Q 039455          121 INLIRWRLCRKRVLVVLDDVD------QLEQLQALAGNHDWFGFGSRIIITTRDEHVLKGHGVTNIYKV  183 (216)
Q Consensus       121 ~~~l~~~l~~~~~llvlDd~~------~~~~~~~l~~~~~~~~~~~~il~tsr~~~~~~~~~~~~~~~l  183 (216)
                      ...+...+..++-++++|+.-      ....+..++..+.   .+..||++||+.+....+ +++.+-+
T Consensus       158 rv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~---~~~tiii~tH~~~~i~~~-~d~i~~l  222 (259)
T PRK14260        158 RLCIARALAIKPKVLLMDEPCSALDPIATMKVEELIHSLR---SELTIAIVTHNMQQATRV-SDFTAFF  222 (259)
T ss_pred             HHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHh---cCCEEEEEeCCHHHHHHh-cCeEEEE
Confidence            345777777888899999873      2233444443333   246899999998776654 3444444

>TIGR02857 CydD thiol reductant ABC exporter, CydD subunit

Probab=98.25  E-value=4.1e-06  Score=72.09  Aligned_cols=28  Identities=25%  Similarity=0.394  Sum_probs=24.4

Q ss_pred             CCeeEEEEEecCCCcHHHHHHHHHHHhc
Q 039455           47 DDVRFIGICGMGGIGKTTLAKVLYNTLK   74 (216)
Q Consensus        47 ~~~~~i~I~G~~GiGKTtL~~~~~~~~~   74 (216)
                      +.+..++|+|++|+|||||++.+.+.+.
T Consensus       346 ~~G~~~~ivG~sGsGKSTL~~ll~g~~~  373 (529)
T TIGR02857       346 PPGERVALVGPSGAGKSTLLNLLLGFVD  373 (529)
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence            4568999999999999999999988544

Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD

>PRK03695 vitamin B12-transporter ATPase; Provisional

Probab=98.25  E-value=3.4e-06  Score=65.53  Aligned_cols=27  Identities=26%  Similarity=0.372  Sum_probs=23.6

Q ss_pred             CCeeEEEEEecCCCcHHHHHHHHHHHh
Q 039455           47 DDVRFIGICGMGGIGKTTLAKVLYNTL   73 (216)
Q Consensus        47 ~~~~~i~I~G~~GiGKTtL~~~~~~~~   73 (216)
                      ..+.+++|.|++|+|||||++.+++..
T Consensus        20 ~~Gei~~l~G~nGsGKSTLl~~l~Gl~   46 (248)
T PRK03695         20 RAGEILHLVGPNGAGKSTLLARMAGLL   46 (248)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHcCCC
Confidence            346899999999999999999998753

>TIGR02769 nickel_nikE nickel import ATP-binding protein NikE

Probab=98.25  E-value=6.5e-06  Score=64.55  Aligned_cols=28  Identities=36%  Similarity=0.599  Sum_probs=24.3

Q ss_pred             CCeeEEEEEecCCCcHHHHHHHHHHHhc
Q 039455           47 DDVRFIGICGMGGIGKTTLAKVLYNTLK   74 (216)
Q Consensus        47 ~~~~~i~I~G~~GiGKTtL~~~~~~~~~   74 (216)
                      ..+..++|.|++|+|||||++.+++.+.
T Consensus        35 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~   62 (265)
T TIGR02769        35 EEGETVGLLGRSGCGKSTLARLLLGLEK   62 (265)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence            4568999999999999999999998543

This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase.

>cd03279 ABC_sbcCD SbcCD and other Mre11/Rad50 (MR) complexes are implicated in the metabolism of DNA ends

Probab=98.25  E-value=1.6e-05  Score=60.29  Aligned_cols=22  Identities=32%  Similarity=0.557  Sum_probs=20.5

Q ss_pred             eeEEEEEecCCCcHHHHHHHHH
Q 039455           49 VRFIGICGMGGIGKTTLAKVLY   70 (216)
Q Consensus        49 ~~~i~I~G~~GiGKTtL~~~~~   70 (216)
                      +..++|+|++|+|||||++.+.
T Consensus        28 ~~~~~i~G~NGsGKSTll~~i~   49 (213)
T cd03279          28 NGLFLICGPTGAGKSTILDAIT   49 (213)
T ss_pred             cCEEEEECCCCCCHHHHHHHhe
Confidence            5699999999999999999987

They cleave ends sealed by hairpin structures and are thought to play a role in removing protein bound to DNA termini.

>TIGR02323 CP_lyasePhnK phosphonate C-P lyase system protein PhnK

Probab=98.25  E-value=6e-06  Score=64.28  Aligned_cols=55  Identities=24%  Similarity=0.182  Sum_probs=35.3

Q ss_pred             hHHHHHHHhCCceEEEEEeCCCC------HHHHHHhhcCCCCCCCCcEEEEEeCCchhhhcc
Q 039455          120 GINLIRWRLCRKRVLVVLDDVDQ------LEQLQALAGNHDWFGFGSRIIITTRDEHVLKGH  175 (216)
Q Consensus       120 ~~~~l~~~l~~~~~llvlDd~~~------~~~~~~l~~~~~~~~~~~~il~tsr~~~~~~~~  175 (216)
                      ..-.+...+..++-++++|+.-+      .+.+..++..+.. ..+..+|++||+.+....+
T Consensus       155 qrv~laral~~~p~vlllDEP~~~LD~~~~~~l~~~l~~~~~-~~~~tii~vsH~~~~~~~~  215 (253)
T TIGR02323       155 QRLQIARNLVTRPRLVFMDEPTGGLDVSVQARLLDLLRGLVR-DLGLAVIIVTHDLGVARLL  215 (253)
T ss_pred             HHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHH-hcCCEEEEEeCCHHHHHHh
Confidence            34457778888999999998732      2333333332210 2367899999998776653

Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se.

>PHA02244 ATPase-like protein

Probab=98.25  E-value=9.3e-06  Score=65.72  Aligned_cols=51  Identities=12%  Similarity=0.080  Sum_probs=34.9

Q ss_pred             cccccccchhHHHHHHHHHhcCCCCeeEEEEEecCCCcHHHHHHHHHHHhc
Q 039455           24 AVDGLVGIASRMEKMNGYLEAGLDDVRFIGICGMGGIGKTTLAKVLYNTLK   74 (216)
Q Consensus        24 ~~~~~vgR~~~~~~l~~~l~~~~~~~~~i~I~G~~GiGKTtL~~~~~~~~~   74 (216)
                      ....|+|...........+..--.....+.|+||+|+|||+||+.++..+.
T Consensus        94 ~d~~~ig~sp~~~~~~~ri~r~l~~~~PVLL~GppGtGKTtLA~aLA~~lg  144 (383)
T PHA02244         94 IDTTKIASNPTFHYETADIAKIVNANIPVFLKGGAGSGKNHIAEQIAEALD  144 (383)
T ss_pred             CCCcccCCCHHHHHHHHHHHHHHhcCCCEEEECCCCCCHHHHHHHHHHHhC
Confidence            345678877766544332221112235788999999999999999998754

>PRK13547 hmuV hemin importer ATP-binding subunit; Provisional

Probab=98.25  E-value=6e-06  Score=64.97  Aligned_cols=28  Identities=36%  Similarity=0.501  Sum_probs=24.4

Q ss_pred             CCeeEEEEEecCCCcHHHHHHHHHHHhc
Q 039455           47 DDVRFIGICGMGGIGKTTLAKVLYNTLK   74 (216)
Q Consensus        47 ~~~~~i~I~G~~GiGKTtL~~~~~~~~~   74 (216)
                      ..+.+++|.|++|+|||||++.+++.+.
T Consensus        25 ~~Ge~~~l~G~nGsGKSTLl~~laG~~~   52 (272)
T PRK13547         25 EPGRVTALLGRNGAGKSTLLKALAGDLT   52 (272)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence            3467999999999999999999998654

>PRK13633 cobalt transporter ATP-binding subunit; Provisional

Probab=98.24  E-value=3e-06  Score=67.02  Aligned_cols=53  Identities=13%  Similarity=0.080  Sum_probs=34.6

Q ss_pred             HHHHHHHhCCceEEEEEeCCCC------HHHHHHhhcCCCCCCCCcEEEEEeCCchhhhc
Q 039455          121 INLIRWRLCRKRVLVVLDDVDQ------LEQLQALAGNHDWFGFGSRIIITTRDEHVLKG  174 (216)
Q Consensus       121 ~~~l~~~l~~~~~llvlDd~~~------~~~~~~l~~~~~~~~~~~~il~tsr~~~~~~~  174 (216)
                      ...+...+..++-++++|+..+      ...+..++..+.. ..+..||++||+.+....
T Consensus       152 rv~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~-~~g~tillvtH~~~~~~~  210 (280)
T PRK13633        152 RVAIAGILAMRPECIIFDEPTAMLDPSGRREVVNTIKELNK-KYGITIILITHYMEEAVE  210 (280)
T ss_pred             HHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHH-hcCCEEEEEecChHHHhc
Confidence            4457777888899999997732      2334444433321 236789999999877653

>PRK14246 phosphate ABC transporter ATP-binding protein; Provisional

Probab=98.24  E-value=9.1e-06  Score=63.44  Aligned_cols=59  Identities=12%  Similarity=0.122  Sum_probs=38.3

Q ss_pred             HHHHHHHhCCceEEEEEeCCCC------HHHHHHhhcCCCCCCCCcEEEEEeCCchhhhccCCcceEEe
Q 039455          121 INLIRWRLCRKRVLVVLDDVDQ------LEQLQALAGNHDWFGFGSRIIITTRDEHVLKGHGVTNIYKV  183 (216)
Q Consensus       121 ~~~l~~~l~~~~~llvlDd~~~------~~~~~~l~~~~~~~~~~~~il~tsr~~~~~~~~~~~~~~~l  183 (216)
                      .-.+.+.+..++-++++|+...      .+.+..++..+.   .+..||++||+......+ +++.+.+
T Consensus       161 rl~laral~~~P~llllDEPt~~LD~~~~~~l~~~l~~~~---~~~tiilvsh~~~~~~~~-~d~v~~l  225 (257)
T PRK14246        161 RLTIARALALKPKVLLMDEPTSMIDIVNSQAIEKLITELK---NEIAIVIVSHNPQQVARV-ADYVAFL  225 (257)
T ss_pred             HHHHHHHHHcCCCEEEEcCCCccCCHHHHHHHHHHHHHHh---cCcEEEEEECCHHHHHHh-CCEEEEE
Confidence            3356777778889999998732      244555554443   247899999998876554 3343333

>PRK14271 phosphate ABC transporter ATP-binding protein; Provisional

Probab=98.24  E-value=6.4e-06  Score=65.00  Aligned_cols=28  Identities=25%  Similarity=0.290  Sum_probs=24.5

Q ss_pred             CCeeEEEEEecCCCcHHHHHHHHHHHhc
Q 039455           47 DDVRFIGICGMGGIGKTTLAKVLYNTLK   74 (216)
Q Consensus        47 ~~~~~i~I~G~~GiGKTtL~~~~~~~~~   74 (216)
                      ..+..++|.|++|+|||||++.+++...
T Consensus        45 ~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~   72 (276)
T PRK14271         45 PARAVTSLMGPTGSGKTTFLRTLNRMND   72 (276)
T ss_pred             cCCcEEEEECCCCCCHHHHHHHHhccCC
Confidence            3568999999999999999999998654

>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family

Probab=98.24  E-value=6.7e-06  Score=71.12  Aligned_cols=131  Identities=14%  Similarity=0.165  Sum_probs=70.7

Q ss_pred             CCeeEEEEEecCCCcHHHHHHHHHHHhcCCCCceEeecc---ccccccc-------cCchHH----------------HH
Q 039455           47 DDVRFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLAN---VREVSVT-------RGLVPL----------------QE  100 (216)
Q Consensus        47 ~~~~~i~I~G~~GiGKTtL~~~~~~~~~~~~~~~~~~~~---~~~~~~~-------~~~~~~----------------~~  100 (216)
                      ..+.+++|.|++|+|||||++.+++..... .+.+++..   .+.....       ......                ..
T Consensus       346 ~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~-~G~i~~~~~~~i~~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~  424 (552)
T TIGR03719       346 PPGGIVGVIGPNGAGKSTLFRMITGQEQPD-SGTIKIGETVKLAYVDQSRDALDPNKTVWEEISGGLDIIQLGKREVPSR  424 (552)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHcCCCCCC-CeEEEECCceEEEEEeCCccccCCCCcHHHHHHhhccccccCcchHHHH
Confidence            346799999999999999999999865432 12111110   0000000       011000                11


Q ss_pred             HHHHHHHhhc------cccccchhhhHHHHHHHhCCceEEEEEeCCC------CHHHHHHhhcCCCCCCCCcEEEEEeCC
Q 039455          101 QLLSEVLMER------NLIIWDVHKGINLIRWRLCRKRVLVVLDDVD------QLEQLQALAGNHDWFGFGSRIIITTRD  168 (216)
Q Consensus       101 ~l~~~~~~~~------~~~~~~~~~~~~~l~~~l~~~~~llvlDd~~------~~~~~~~l~~~~~~~~~~~~il~tsr~  168 (216)
                      .++..+.-..      ....+..+...-.+...+..++-++++|+.-      ....+..++..+.    + .||++||+
T Consensus       425 ~~l~~~~l~~~~~~~~~~~LSgGe~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~----~-~viivsHd  499 (552)
T TIGR03719       425 AYVGRFNFKGSDQQKKVGQLSGGERNRVHLAKTLKSGGNVLLLDEPTNDLDVETLRALEEALLEFA----G-CAVVISHD  499 (552)
T ss_pred             HHHHhCCCChhHhcCchhhCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHCC----C-eEEEEeCC
Confidence            1222211100      0111222333445778888899999999873      2244555554442    3 69999999


Q ss_pred             chhhhccCCcceEEec
Q 039455          169 EHVLKGHGVTNIYKVR  184 (216)
Q Consensus       169 ~~~~~~~~~~~~~~l~  184 (216)
                      .+.+..+ ++..+.+.
T Consensus       500 ~~~~~~~-~d~i~~l~  514 (552)
T TIGR03719       500 RWFLDRI-ATHILAFE  514 (552)
T ss_pred             HHHHHHh-CCEEEEEE
Confidence            9877665 44555553

Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.

>PRK14244 phosphate ABC transporter ATP-binding protein; Provisional

Probab=98.24  E-value=1.4e-05  Score=62.22  Aligned_cols=52  Identities=15%  Similarity=0.121  Sum_probs=34.4

Q ss_pred             HHHHHHHhCCceEEEEEeCCCC------HHHHHHhhcCCCCCCCCcEEEEEeCCchhhhcc
Q 039455          121 INLIRWRLCRKRVLVVLDDVDQ------LEQLQALAGNHDWFGFGSRIIITTRDEHVLKGH  175 (216)
Q Consensus       121 ~~~l~~~l~~~~~llvlDd~~~------~~~~~~l~~~~~~~~~~~~il~tsr~~~~~~~~  175 (216)
                      .-.+...+..++-++++|+...      ...+..++..+.   .+..||++||+.+....+
T Consensus       157 rv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~---~~~tiiiisH~~~~~~~~  214 (251)
T PRK14244        157 RLCIARAIAVKPTMLLMDEPCSALDPVATNVIENLIQELK---KNFTIIVVTHSMKQAKKV  214 (251)
T ss_pred             HHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHh---cCCeEEEEeCCHHHHHhh
Confidence            3356777778888999998732      233444443332   367899999998766543

>cd01121 Sms Sms (bacterial radA) DNA repair protein

Probab=98.24  E-value=8.1e-06  Score=66.83  Aligned_cols=49  Identities=29%  Similarity=0.310  Sum_probs=36.3

Q ss_pred             HHHHHHHhcCCCCeeEEEEEecCCCcHHHHHHHHHHHhcCCCCceEeec
Q 039455           36 EKMNGYLEAGLDDVRFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLA   84 (216)
Q Consensus        36 ~~l~~~l~~~~~~~~~i~I~G~~GiGKTtL~~~~~~~~~~~~~~~~~~~   84 (216)
                      ..|.+.|..+-..+.++.|.|++|+|||||+.+++.........+.|++
T Consensus        69 ~eLD~vLgGGi~~GslvLI~G~pG~GKStLllq~a~~~a~~g~~VlYvs  117 (372)
T cd01121          69 EELDRVLGGGLVPGSVILIGGDPGIGKSTLLLQVAARLAKRGGKVLYVS  117 (372)
T ss_pred             HHHHHhhcCCccCCeEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEEE
Confidence            3455555544455789999999999999999999987655444566664

This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.

>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]

Probab=98.24  E-value=6.6e-06  Score=62.02  Aligned_cols=52  Identities=27%  Similarity=0.356  Sum_probs=42.3

Q ss_pred             CCcccccccchhHHHHHHHHHhcCCCCeeEEEEEecCCCcHHHHHHHHHHHhcC
Q 039455           22 PSAVDGLVGIASRMEKMNGYLEAGLDDVRFIGICGMGGIGKTTLAKVLYNTLKD   75 (216)
Q Consensus        22 ~~~~~~~vgR~~~~~~l~~~l~~~~~~~~~i~I~G~~GiGKTtL~~~~~~~~~~   75 (216)
                      |....+.||.++-++++.-....  .+-+.++|.||+|+||||-+..+++.+-.
T Consensus        23 P~~l~dIVGNe~tv~rl~via~~--gnmP~liisGpPG~GKTTsi~~LAr~LLG   74 (333)
T KOG0991|consen   23 PSVLQDIVGNEDTVERLSVIAKE--GNMPNLIISGPPGTGKTTSILCLARELLG   74 (333)
T ss_pred             chHHHHhhCCHHHHHHHHHHHHc--CCCCceEeeCCCCCchhhHHHHHHHHHhC
Confidence            33456789999999998887665  45689999999999999999999886543

>cd03288 ABCC_SUR2 The SUR domain 2

Probab=98.24  E-value=1.8e-05  Score=61.73  Aligned_cols=61  Identities=8%  Similarity=0.140  Sum_probs=39.1

Q ss_pred             hhhHHHHHHHhCCceEEEEEeCCCC------HHHHHHhhcCCCCCCCCcEEEEEeCCchhhhccCCcceEEe
Q 039455          118 HKGINLIRWRLCRKRVLVVLDDVDQ------LEQLQALAGNHDWFGFGSRIIITTRDEHVLKGHGVTNIYKV  183 (216)
Q Consensus       118 ~~~~~~l~~~l~~~~~llvlDd~~~------~~~~~~l~~~~~~~~~~~~il~tsr~~~~~~~~~~~~~~~l  183 (216)
                      +...-.+...+..++-++++|+.-.      .+.+..++...   ..+..||++||+.+....  ++..+.+
T Consensus       161 ~~qrl~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~~---~~~~tiii~sh~~~~~~~--~dri~~l  227 (257)
T cd03288         161 QRQLFCLARAFVRKSSILIMDEATASIDMATENILQKVVMTA---FADRTVVTIAHRVSTILD--ADLVLVL  227 (257)
T ss_pred             HHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHh---cCCCEEEEEecChHHHHh--CCEEEEE
Confidence            3334457888888999999998732      23344444333   236789999999877654  4554444

The sulfonylurea receptor SUR is an ATP binding cassette (ABC) protein of the ABCC/MRP family. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.

>PRK09376 rho transcription termination factor Rho; Provisional

Probab=98.24  E-value=2.5e-06  Score=69.38  Aligned_cols=42  Identities=19%  Similarity=0.100  Sum_probs=33.6

Q ss_pred             CCeeEEEEEecCCCcHHHHHHHHHHHhcC-CCCceEeeccccc
Q 039455           47 DDVRFIGICGMGGIGKTTLAKVLYNTLKD-QFEASSFLANVRE   88 (216)
Q Consensus        47 ~~~~~i~I~G~~GiGKTtL~~~~~~~~~~-~~~~~~~~~~~~~   88 (216)
                      ..+...+|+||+|+|||||++.+++.+.. +|+...|+...+.
T Consensus       167 GkGQR~lIvgppGvGKTTLaK~Ian~I~~nhFDv~~~VvLIgE  209 (416)
T PRK09376        167 GKGQRGLIVAPPKAGKTVLLQNIANSITTNHPEVHLIVLLIDE  209 (416)
T ss_pred             ccCceEEEeCCCCCChhHHHHHHHHHHHhhcCCeEEEEEEeCC
Confidence            35678999999999999999999997654 5777788864433

>COG4181 Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]

Probab=98.24  E-value=1e-05  Score=58.25  Aligned_cols=61  Identities=10%  Similarity=0.121  Sum_probs=45.5

Q ss_pred             ccchhhhHHHHHHHhCCceEEEEEeCC----C--CHHHHHHhhcCCCCCCCCcEEEEEeCCchhhhcc
Q 039455          114 IWDVHKGINLIRWRLCRKRVLVVLDDV----D--QLEQLQALAGNHDWFGFGSRIIITTRDEHVLKGH  175 (216)
Q Consensus       114 ~~~~~~~~~~l~~~l~~~~~llvlDd~----~--~~~~~~~l~~~~~~~~~~~~il~tsr~~~~~~~~  175 (216)
                      .+..+.....+.+.+...|-+++=|+.    |  .-+.+.+++..++. ..|.+.++.||++.++.++
T Consensus       147 LSGGEQQRVAiARAfa~~P~vLfADEPTGNLD~~Tg~~iaDLlF~lnr-e~G~TlVlVTHD~~LA~Rc  213 (228)
T COG4181         147 LSGGEQQRVALARAFAGRPDVLFADEPTGNLDRATGDKIADLLFALNR-ERGTTLVLVTHDPQLAARC  213 (228)
T ss_pred             cCchHHHHHHHHHHhcCCCCEEeccCCCCCcchhHHHHHHHHHHHHhh-hcCceEEEEeCCHHHHHhh
Confidence            344556677899999999999999976    2  22557777765542 4678899999999888775

>cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP)

Probab=98.23  E-value=2.2e-05  Score=61.51  Aligned_cols=119  Identities=14%  Similarity=0.071  Sum_probs=68.4

Q ss_pred             HHHHHHHHHhcCCCCeeEEEEEecCCCcHHHHHHHHHHHhcCCCCceEeeccccccccccCchHHHHHHHHHHHhhcccc
Q 039455           34 RMEKMNGYLEAGLDDVRFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLANVREVSVTRGLVPLQEQLLSEVLMERNLI  113 (216)
Q Consensus        34 ~~~~l~~~l~~~~~~~~~i~I~G~~GiGKTtL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~  113 (216)
                      .++.|..++...   ...++|.|+.|+||||+++.+...+......++.+.+....    .+...         ......
T Consensus        68 ~~~~l~~~~~~~---~GlilisG~tGSGKTT~l~all~~i~~~~~~iitiEdp~E~----~~~~~---------~q~~v~  131 (264)
T cd01129          68 NLEIFRKLLEKP---HGIILVTGPTGSGKTTTLYSALSELNTPEKNIITVEDPVEY----QIPGI---------NQVQVN  131 (264)
T ss_pred             HHHHHHHHHhcC---CCEEEEECCCCCcHHHHHHHHHhhhCCCCCeEEEECCCcee----cCCCc---------eEEEeC
Confidence            344455555432   36899999999999999999988765422223333221111    11000         000001


Q ss_pred             ccchhhhHHHHHHHhCCceEEEEEeCCCCHHHHHHhhcCCCCCCCCcEEEEEeCCchh
Q 039455          114 IWDVHKGINLIRWRLCRKRVLVVLDDVDQLEQLQALAGNHDWFGFGSRIIITTRDEHV  171 (216)
Q Consensus       114 ~~~~~~~~~~l~~~l~~~~~llvlDd~~~~~~~~~l~~~~~~~~~~~~il~tsr~~~~  171 (216)
                      ..........+...+...+-+++++++...+....++....   .|..++-|.|..+.
T Consensus       132 ~~~~~~~~~~l~~~lR~~PD~i~vgEiR~~e~a~~~~~aa~---tGh~v~tTlHa~~~  186 (264)
T cd01129         132 EKAGLTFARGLRAILRQDPDIIMVGEIRDAETAEIAVQAAL---TGHLVLSTLHTNDA  186 (264)
T ss_pred             CcCCcCHHHHHHHHhccCCCEEEeccCCCHHHHHHHHHHHH---cCCcEEEEeccCCH
Confidence            11112345667788888999999999988876655443322   34446777776544

It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB.

>PRK13632 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=98.23  E-value=3.8e-06  Score=66.08  Aligned_cols=28  Identities=36%  Similarity=0.668  Sum_probs=24.3

Q ss_pred             CCeeEEEEEecCCCcHHHHHHHHHHHhc
Q 039455           47 DDVRFIGICGMGGIGKTTLAKVLYNTLK   74 (216)
Q Consensus        47 ~~~~~i~I~G~~GiGKTtL~~~~~~~~~   74 (216)
                      ..+.+++|.|++|+|||||++.+++...
T Consensus        33 ~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~   60 (271)
T PRK13632         33 NEGEYVAILGHNGSGKSTISKILTGLLK   60 (271)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence            4568999999999999999999998543

>TIGR01420 pilT_fam pilus retraction protein PilT

Probab=98.23  E-value=7.8e-06  Score=66.48  Aligned_cols=110  Identities=14%  Similarity=0.165  Sum_probs=63.8

Q ss_pred             eeEEEEEecCCCcHHHHHHHHHHHhcCCCCceEeeccccccccccCchHHHHHHHHHHHhhccccccchhhhHHHHHHHh
Q 039455           49 VRFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLANVREVSVTRGLVPLQEQLLSEVLMERNLIIWDVHKGINLIRWRL  128 (216)
Q Consensus        49 ~~~i~I~G~~GiGKTtL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l  128 (216)
                      ...++|+|++|+||||+++.+...+.......++..  .+     ........ ...+....... .+.......+...+
T Consensus       122 ~g~ili~G~tGSGKTT~l~al~~~i~~~~~~~i~ti--Ed-----p~E~~~~~-~~~~i~q~evg-~~~~~~~~~l~~~l  192 (343)
T TIGR01420       122 RGLILVTGPTGSGKSTTLASMIDYINKNAAGHIITI--ED-----PIEYVHRN-KRSLINQREVG-LDTLSFANALRAAL  192 (343)
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHhhCcCCCCEEEEE--cC-----ChhhhccC-ccceEEccccC-CCCcCHHHHHHHhh
Confidence            478999999999999999999987765433333331  11     10000000 00000000000 11223455677888


Q ss_pred             CCceEEEEEeCCCCHHHHHHhhcCCCCCCCCcEEEEEeCCch
Q 039455          129 CRKRVLVVLDDVDQLEQLQALAGNHDWFGFGSRIIITTRDEH  170 (216)
Q Consensus       129 ~~~~~llvlDd~~~~~~~~~l~~~~~~~~~~~~il~tsr~~~  170 (216)
                      ...+-+|++|++...+.+...+...   ..|..++.|.|..+
T Consensus       193 r~~pd~i~vgEird~~~~~~~l~aa---~tGh~v~~T~Ha~~  231 (343)
T TIGR01420       193 REDPDVILIGEMRDLETVELALTAA---ETGHLVFGTLHTNS  231 (343)
T ss_pred             ccCCCEEEEeCCCCHHHHHHHHHHH---HcCCcEEEEEcCCC
Confidence            8999999999998766655433321   34566888888753

This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.

>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]

Probab=98.23  E-value=1.8e-05  Score=68.30  Aligned_cols=166  Identities=19%  Similarity=0.164  Sum_probs=97.1

Q ss_pred             ccccccchhHHHHHHHHHhcC-----------CCCeeEEEEEecCCCcHHHHHHHHHHHhcCCCCceEeecccccccccc
Q 039455           25 VDGLVGIASRMEKMNGYLEAG-----------LDDVRFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLANVREVSVTR   93 (216)
Q Consensus        25 ~~~~vgR~~~~~~l~~~l~~~-----------~~~~~~i~I~G~~GiGKTtL~~~~~~~~~~~~~~~~~~~~~~~~~~~~   93 (216)
                      ..+.-|..+..+.+.+.+.-+           -....-|.++||+|+|||.||-+++....     ..+++.-       
T Consensus       666 w~digg~~~~k~~l~~~i~~P~kyp~if~~~plr~~~giLLyGppGcGKT~la~a~a~~~~-----~~fisvK-------  733 (952)
T KOG0735|consen  666 WEDIGGLFEAKKVLEEVIEWPSKYPQIFANCPLRLRTGILLYGPPGCGKTLLASAIASNSN-----LRFISVK-------  733 (952)
T ss_pred             ceecccHHHHHHHHHHHHhccccchHHHhhCCcccccceEEECCCCCcHHHHHHHHHhhCC-----eeEEEec-------
Confidence            445667777666676655422           22456899999999999999999987543     2233311       


Q ss_pred             CchHHHHHHHHHHHhhccccccchhhhHHHHHHHhCCceEEEEEeCCCCH-------------HHHHHhhcCCC--CCCC
Q 039455           94 GLVPLQEQLLSEVLMERNLIIWDVHKGINLIRWRLCRKRVLVVLDDVDQL-------------EQLQALAGNHD--WFGF  158 (216)
Q Consensus        94 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~llvlDd~~~~-------------~~~~~l~~~~~--~~~~  158 (216)
                      +.     +++....+.      +.+.....+.++-.-+||+|+||+++++             .-+.+++-.+.  ..-.
T Consensus       734 GP-----ElL~KyIGa------SEq~vR~lF~rA~~a~PCiLFFDEfdSiAPkRGhDsTGVTDRVVNQlLTelDG~Egl~  802 (952)
T KOG0735|consen  734 GP-----ELLSKYIGA------SEQNVRDLFERAQSAKPCILFFDEFDSIAPKRGHDSTGVTDRVVNQLLTELDGAEGLD  802 (952)
T ss_pred             CH-----HHHHHHhcc------cHHHHHHHHHHhhccCCeEEEeccccccCcccCCCCCCchHHHHHHHHHhhccccccc
Confidence            11     222221111      2233444556666679999999999765             12455554442  1114


Q ss_pred             CcEEEEEeCCchhhhc--c---CCcceEEecCCChHHHHHHHhhhhcC-CCCCchhHhhhc
Q 039455          159 GSRIIITTRDEHVLKG--H---GVTNIYKVRGLDYVEALQLFHLKVSK-GKQPTDDRVELS  213 (216)
Q Consensus       159 ~~~il~tsr~~~~~~~--~---~~~~~~~l~~l~~~~~~~ll~~~~~~-~~~~~~~~~~l~  213 (216)
                      |..|+.+|.-+++.+.  +   ..++.+..+.-++.+..++|+...-. ..+.+-+++-+|
T Consensus       803 GV~i~aaTsRpdliDpALLRpGRlD~~v~C~~P~~~eRl~il~~ls~s~~~~~~vdl~~~a  863 (952)
T KOG0735|consen  803 GVYILAATSRPDLIDPALLRPGRLDKLVYCPLPDEPERLEILQVLSNSLLKDTDVDLECLA  863 (952)
T ss_pred             eEEEEEecCCccccCHhhcCCCccceeeeCCCCCcHHHHHHHHHHhhccCCccccchHHHh
Confidence            5666655544444222  1   24677778888888999999876532 223333444444

>PRK09700 D-allose transporter ATP-binding protein; Provisional

Probab=98.23  E-value=3.7e-06  Score=72.04  Aligned_cols=62  Identities=13%  Similarity=0.146  Sum_probs=40.7

Q ss_pred             hhHHHHHHHhCCceEEEEEeCCC------CHHHHHHhhcCCCCCCCCcEEEEEeCCchhhhccCCcceEEe
Q 039455          119 KGINLIRWRLCRKRVLVVLDDVD------QLEQLQALAGNHDWFGFGSRIIITTRDEHVLKGHGVTNIYKV  183 (216)
Q Consensus       119 ~~~~~l~~~l~~~~~llvlDd~~------~~~~~~~l~~~~~~~~~~~~il~tsr~~~~~~~~~~~~~~~l  183 (216)
                      ...-.+...+..++-++++|+.-      ..+.+..++..+.  ..+..||++||+......+ ++..+.+
T Consensus       415 ~qrv~lAral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~l~--~~g~tvi~vsHd~~~~~~~-~d~i~~l  482 (510)
T PRK09700        415 QQKVLISKWLCCCPEVIIFDEPTRGIDVGAKAEIYKVMRQLA--DDGKVILMVSSELPEIITV-CDRIAVF  482 (510)
T ss_pred             HHHHHHHHHHhcCCCEEEECCCCCCcCHHHHHHHHHHHHHHH--HCCCEEEEEcCCHHHHHhh-CCEEEEE
Confidence            34446778888889999999773      2344445554443  2467899999998776654 3444444

>PLN03073 ABC transporter F family; Provisional

Probab=98.23  E-value=8.1e-06  Score=72.39  Aligned_cols=131  Identities=18%  Similarity=0.205  Sum_probs=69.0

Q ss_pred             CCeeEEEEEecCCCcHHHHHHHHHHHhcCCCCceE--------eeccc--cccccccC------------chHHHHHHHH
Q 039455           47 DDVRFIGICGMGGIGKTTLAKVLYNTLKDQFEASS--------FLANV--REVSVTRG------------LVPLQEQLLS  104 (216)
Q Consensus        47 ~~~~~i~I~G~~GiGKTtL~~~~~~~~~~~~~~~~--------~~~~~--~~~~~~~~------------~~~~~~~l~~  104 (216)
                      ..+..++|+|++|+|||||++.+++.+......+.        |+.-.  ........            .......++.
T Consensus       533 ~~Ge~i~LvG~NGsGKSTLLk~L~Gll~p~~G~I~~~~~~~igyv~Q~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~L~  612 (718)
T PLN03073        533 DLDSRIAMVGPNGIGKSTILKLISGELQPSSGTVFRSAKVRMAVFSQHHVDGLDLSSNPLLYMMRCFPGVPEQKLRAHLG  612 (718)
T ss_pred             cCCCEEEEECCCCCcHHHHHHHHhCCCCCCCceEEECCceeEEEEeccccccCCcchhHHHHHHHhcCCCCHHHHHHHHH
Confidence            34679999999999999999999986543211111        11100  00000000            0001111222


Q ss_pred             HHHhh------ccccccchhhhHHHHHHHhCCceEEEEEeCCCC------HHHHHHhhcCCCCCCCCcEEEEEeCCchhh
Q 039455          105 EVLME------RNLIIWDVHKGINLIRWRLCRKRVLVVLDDVDQ------LEQLQALAGNHDWFGFGSRIIITTRDEHVL  172 (216)
Q Consensus       105 ~~~~~------~~~~~~~~~~~~~~l~~~l~~~~~llvlDd~~~------~~~~~~l~~~~~~~~~~~~il~tsr~~~~~  172 (216)
                      .+...      .....+..+...-.+...+..++-+|++|+.-+      .+.+...+..+    . ..||++||+..+.
T Consensus       613 ~~gl~~~~~~~~~~~LSgGqkqRvaLAraL~~~p~lLLLDEPT~~LD~~s~~~l~~~L~~~----~-gtvIivSHd~~~i  687 (718)
T PLN03073        613 SFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHILLLDEPSNHLDLDAVEALIQGLVLF----Q-GGVLMVSHDEHLI  687 (718)
T ss_pred             HCCCChHHhcCCccccCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHHc----C-CEEEEEECCHHHH
Confidence            21110      001122233344467888888999999998732      22333333222    2 3799999999887


Q ss_pred             hccCCcceEEe
Q 039455          173 KGHGVTNIYKV  183 (216)
Q Consensus       173 ~~~~~~~~~~l  183 (216)
                      ..+ ++..+.+
T Consensus       688 ~~~-~drv~~l  697 (718)
T PLN03073        688 SGS-VDELWVV  697 (718)
T ss_pred             HHh-CCEEEEE
Confidence            765 4444444

>PRK08769 DNA polymerase III subunit delta'; Validated

Probab=98.23  E-value=0.00011  Score=59.02  Aligned_cols=144  Identities=16%  Similarity=0.113  Sum_probs=81.3

Q ss_pred             hhHHHHHHHHHhcCCCCeeEEEEEecCCCcHHHHHHHHHHHhcCCC------------------CceEeec-cccccccc
Q 039455           32 ASRMEKMNGYLEAGLDDVRFIGICGMGGIGKTTLAKVLYNTLKDQF------------------EASSFLA-NVREVSVT   92 (216)
Q Consensus        32 ~~~~~~l~~~l~~~~~~~~~i~I~G~~GiGKTtL~~~~~~~~~~~~------------------~~~~~~~-~~~~~~~~   92 (216)
                      +...+.+.+.+..+ .-...+.++|+.|+||+++|..++..+--.-                  |...|+. ...+    
T Consensus        10 ~~~~~~l~~~~~~~-rl~HA~Lf~Gp~G~GK~~lA~~lA~~LlC~~~~~~~~c~~c~~~~~g~HPD~~~i~~~p~~----   84 (319)
T PRK08769         10 QRAYDQTVAALDAG-RLGHGLLICGPEGLGKRAVALALAEHVLASGPDPAAAQRTRQLIAAGTHPDLQLVSFIPNR----   84 (319)
T ss_pred             HHHHHHHHHHHHcC-CcceeEeeECCCCCCHHHHHHHHHHHHhCCCCCCCCcchHHHHHhcCCCCCEEEEecCCCc----
Confidence            34455666665543 3345799999999999999999998543211                  1111110 0000    


Q ss_pred             cCchHHHHHHHHHHHhhccccccchhhhHHHHH---HHh-----CCceEEEEEeCCCCH--HHHHHhhcCCCCCCCCcEE
Q 039455           93 RGLVPLQEQLLSEVLMERNLIIWDVHKGINLIR---WRL-----CRKRVLVVLDDVDQL--EQLQALAGNHDWFGFGSRI  162 (216)
Q Consensus        93 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~---~~l-----~~~~~llvlDd~~~~--~~~~~l~~~~~~~~~~~~i  162 (216)
                                        ..........++.++   +.+     .++.-++|||+++..  .....++..+..=..++.+
T Consensus        85 ------------------~~~k~~~~I~idqIR~l~~~~~~~p~~g~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~~~f  146 (319)
T PRK08769         85 ------------------TGDKLRTEIVIEQVREISQKLALTPQYGIAQVVIVDPADAINRAACNALLKTLEEPSPGRYL  146 (319)
T ss_pred             ------------------ccccccccccHHHHHHHHHHHhhCcccCCcEEEEeccHhhhCHHHHHHHHHHhhCCCCCCeE
Confidence                              000000001122222   211     235579999999855  4455566555433456667


Q ss_pred             EEEeCCc-hhhhcc-CCcceEEecCCChHHHHHHHhhh
Q 039455          163 IITTRDE-HVLKGH-GVTNIYKVRGLDYVEALQLFHLK  198 (216)
Q Consensus       163 l~tsr~~-~~~~~~-~~~~~~~l~~l~~~~~~~ll~~~  198 (216)
                      |++|+.+ .+...+ ..-..+.+.+++.+++.+.+...
T Consensus       147 iL~~~~~~~lLpTIrSRCq~i~~~~~~~~~~~~~L~~~  184 (319)
T PRK08769        147 WLISAQPARLPATIRSRCQRLEFKLPPAHEALAWLLAQ  184 (319)
T ss_pred             EEEECChhhCchHHHhhheEeeCCCcCHHHHHHHHHHc
Confidence            7777654 344343 23477899999999999888754

>PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=98.23  E-value=3.7e-06  Score=66.12  Aligned_cols=28  Identities=32%  Similarity=0.503  Sum_probs=24.4

Q ss_pred             CCeeEEEEEecCCCcHHHHHHHHHHHhc
Q 039455           47 DDVRFIGICGMGGIGKTTLAKVLYNTLK   74 (216)
Q Consensus        47 ~~~~~i~I~G~~GiGKTtL~~~~~~~~~   74 (216)
                      ..+..++|.|++|+|||||++.+++.+.
T Consensus        33 ~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~   60 (269)
T PRK13648         33 PKGQWTSIVGHNGSGKSTIAKLMIGIEK   60 (269)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence            3568999999999999999999998543

>PRK15093 antimicrobial peptide ABC transporter ATP-binding protein; Provisional

Probab=98.22  E-value=6.9e-06  Score=66.47  Aligned_cols=54  Identities=17%  Similarity=0.214  Sum_probs=35.5

Q ss_pred             HHHHHHHhCCceEEEEEeCCCC------HHHHHHhhcCCCCCCCCcEEEEEeCCchhhhcc
Q 039455          121 INLIRWRLCRKRVLVVLDDVDQ------LEQLQALAGNHDWFGFGSRIIITTRDEHVLKGH  175 (216)
Q Consensus       121 ~~~l~~~l~~~~~llvlDd~~~------~~~~~~l~~~~~~~~~~~~il~tsr~~~~~~~~  175 (216)
                      ...+...+..++-+||+|+.-+      ...+..++..+.. ..+..||++||+...+..+
T Consensus       166 Rv~iArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~-~~g~tii~itHdl~~v~~~  225 (330)
T PRK15093        166 KVMIAIALANQPRLLIADEPTNAMEPTTQAQIFRLLTRLNQ-NNNTTILLISHDLQMLSQW  225 (330)
T ss_pred             HHHHHHHHHCCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHH-hcCCEEEEEECCHHHHHHh
Confidence            3457778888899999998732      2333444433321 2367899999998776553

>PLN03073 ABC transporter F family; Provisional

Probab=98.22  E-value=1e-05  Score=71.75  Aligned_cols=50  Identities=14%  Similarity=0.119  Sum_probs=34.7

Q ss_pred             HHHHHHHhCCceEEEEEeCCCC------HHHHHHhhcCCCCCCCCcEEEEEeCCchhhhcc
Q 039455          121 INLIRWRLCRKRVLVVLDDVDQ------LEQLQALAGNHDWFGFGSRIIITTRDEHVLKGH  175 (216)
Q Consensus       121 ~~~l~~~l~~~~~llvlDd~~~------~~~~~~l~~~~~~~~~~~~il~tsr~~~~~~~~  175 (216)
                      ...+...+..++-+|+||+..+      ...+..++..+     +..+|++||+..++...
T Consensus       352 rv~LA~aL~~~p~lLlLDEPt~~LD~~~~~~l~~~L~~~-----~~tviivsHd~~~l~~~  407 (718)
T PLN03073        352 RIALARALFIEPDLLLLDEPTNHLDLHAVLWLETYLLKW-----PKTFIVVSHAREFLNTV  407 (718)
T ss_pred             HHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHc-----CCEEEEEECCHHHHHHh
Confidence            3357777778889999998742      23444444443     46799999998876654

>PF00158 Sigma54_activat: Sigma-54 interaction domain; InterPro: IPR002078 Some bacterial regulatory proteins activate the expression of genes from promoters recognised by core RNA polymerase associated with the alternative sigma-54 factor

Probab=98.22  E-value=6e-06  Score=60.16  Aligned_cols=46  Identities=24%  Similarity=0.317  Sum_probs=34.9

Q ss_pred             cccchhHHHHHHHHHhcCCCCeeEEEEEecCCCcHHHHHHHHHHHh
Q 039455           28 LVGIASRMEKMNGYLEAGLDDVRFIGICGMGGIGKTTLAKVLYNTL   73 (216)
Q Consensus        28 ~vgR~~~~~~l~~~l~~~~~~~~~i~I~G~~GiGKTtL~~~~~~~~   73 (216)
                      ++|.+..++++.+.+..-......|.|+|++|+||+.+|+.+.+..
T Consensus         1 liG~s~~m~~~~~~~~~~a~~~~pVlI~GE~GtGK~~lA~~IH~~s   46 (168)
T PF00158_consen    1 LIGESPAMKRLREQAKRAASSDLPVLITGETGTGKELLARAIHNNS   46 (168)
T ss_dssp             SS--SHHHHHHHHHHHHHTTSTS-EEEECSTTSSHHHHHHHHHHCS
T ss_pred             CEeCCHHHHHHHHHHHHHhCCCCCEEEEcCCCCcHHHHHHHHHHhh
Confidence            4788889999888776443444789999999999999999998743

These have a conserved domain of about 230 residues involved in the ATP-dependent [, ] interaction with sigma-54. About half of the proteins in which this domain is found (algB, dcdT, flbD, hoxA, hupR1, hydG, ntrC, pgtA and pilR) belong to signal transduction two-component systems [] and possess a domain that can be phosphorylated by a sensor-kinase protein in their N-terminal section. Almost all of these proteins possess a helix-turn-helix DNA-binding domain in their C-terminal section. The domain which interacts with the sigma-54 factor has an ATPase activity. This may be required to promote a conformational change necessary for the interaction []. The domain contains an atypical ATP-binding motif A (P-loop) as well as a form of motif B. The two ATP-binding motifs are located in the N-terminal section of the domain.; GO: 0005524 ATP binding, 0008134 transcription factor binding, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 1NY6_K 3M0E_G 1NY5_A 1OJL_A 3DZD_B 2C9C_A 2C98_A 2C96_A 2BJV_A 2C99_A ....

>PRK14251 phosphate ABC transporter ATP-binding protein; Provisional

Probab=98.22  E-value=9e-06  Score=63.22  Aligned_cols=28  Identities=21%  Similarity=0.417  Sum_probs=24.4

Q ss_pred             CCeeEEEEEecCCCcHHHHHHHHHHHhc
Q 039455           47 DDVRFIGICGMGGIGKTTLAKVLYNTLK   74 (216)
Q Consensus        47 ~~~~~i~I~G~~GiGKTtL~~~~~~~~~   74 (216)
                      ..+..++|+|++|+|||||++.+++.+.
T Consensus        28 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~   55 (251)
T PRK14251         28 EEKELTALIGPSGCGKSTFLRCLNRMND   55 (251)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhhccc
Confidence            3457999999999999999999998653

>PRK13637 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=98.22  E-value=7.6e-06  Score=64.94  Aligned_cols=56  Identities=11%  Similarity=0.095  Sum_probs=36.4

Q ss_pred             hhHHHHHHHhCCceEEEEEeCCCC------HHHHHHhhcCCCCCCCCcEEEEEeCCchhhhcc
Q 039455          119 KGINLIRWRLCRKRVLVVLDDVDQ------LEQLQALAGNHDWFGFGSRIIITTRDEHVLKGH  175 (216)
Q Consensus       119 ~~~~~l~~~l~~~~~llvlDd~~~------~~~~~~l~~~~~~~~~~~~il~tsr~~~~~~~~  175 (216)
                      .....+...+..++-+|++|+.-.      ...+..++..+.. ..+..||++||+.+.+..+
T Consensus       150 ~qrv~iAraL~~~P~llllDEPt~gLD~~~~~~l~~~l~~l~~-~~g~tvi~vtHd~~~~~~~  211 (287)
T PRK13637        150 KRRVAIAGVVAMEPKILILDEPTAGLDPKGRDEILNKIKELHK-EYNMTIILVSHSMEDVAKL  211 (287)
T ss_pred             HHHHHHHHHHHcCCCEEEEECCccCCCHHHHHHHHHHHHHHHH-hcCCEEEEEeCCHHHHHHh
Confidence            334467888888999999998732      2334444443321 2367899999998765443

>PRK14236 phosphate transporter ATP-binding protein; Provisional

Probab=98.22  E-value=1.2e-05  Score=63.22  Aligned_cols=28  Identities=25%  Similarity=0.351  Sum_probs=24.5

Q ss_pred             CCeeEEEEEecCCCcHHHHHHHHHHHhc
Q 039455           47 DDVRFIGICGMGGIGKTTLAKVLYNTLK   74 (216)
Q Consensus        47 ~~~~~i~I~G~~GiGKTtL~~~~~~~~~   74 (216)
                      ..+.+++|+|++|+|||||++.+++...
T Consensus        49 ~~Ge~~~I~G~nGsGKSTLl~~laGl~~   76 (272)
T PRK14236         49 PKNRVTAFIGPSGCGKSTLLRCFNRMND   76 (272)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHHhcCC
Confidence            3568999999999999999999988643

>KOG0727 consensus 26S proteasome regulatory complex, ATPase RPT3 [Posttranslational modification, protein turnover, chaperones]

Probab=98.22  E-value=2.1e-05  Score=60.03  Aligned_cols=152  Identities=19%  Similarity=0.236  Sum_probs=84.6

Q ss_pred             ccccchhHHHHHHHHHhcC-----------CCCeeEEEEEecCCCcHHHHHHHHHHHhcCCCCceEeeccccccccccCc
Q 039455           27 GLVGIASRMEKMNGYLEAG-----------LDDVRFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLANVREVSVTRGL   95 (216)
Q Consensus        27 ~~vgR~~~~~~l~~~l~~~-----------~~~~~~i~I~G~~GiGKTtL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   95 (216)
                      ..=|-+-..+++...+..+           -+-.+-+.++||+|+|||.|++.+++.-...|-  ..+   +        
T Consensus       156 diggld~qkqeireavelplt~~~ly~qigidpprgvllygppg~gktml~kava~~t~a~fi--rvv---g--------  222 (408)
T KOG0727|consen  156 DIGGLDVQKQEIREAVELPLTHADLYKQIGIDPPRGVLLYGPPGTGKTMLAKAVANHTTAAFI--RVV---G--------  222 (408)
T ss_pred             ccccchhhHHHHHHHHhccchHHHHHHHhCCCCCcceEEeCCCCCcHHHHHHHHhhccchhee--eec---c--------
Confidence            3446666666676654321           123578999999999999999999986543331  111   1        


Q ss_pred             hHHHHHHHHHHHhhccccccchhhhHHHHHHHhCCceEEEEEeCCCCH------------HHHHH----hhcCCC--CCC
Q 039455           96 VPLQEQLLSEVLMERNLIIWDVHKGINLIRWRLCRKRVLVVLDDVDQL------------EQLQA----LAGNHD--WFG  157 (216)
Q Consensus        96 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~llvlDd~~~~------------~~~~~----l~~~~~--~~~  157 (216)
                          .++.....+.      ...+....++-.-++.+.++++|+++..            .+++.    ++..+.  +..
T Consensus       223 ----sefvqkylge------gprmvrdvfrlakenapsiifideidaiatkrfdaqtgadrevqril~ellnqmdgfdq~  292 (408)
T KOG0727|consen  223 ----SEFVQKYLGE------GPRMVRDVFRLAKENAPSIIFIDEIDAIATKRFDAQTGADREVQRILIELLNQMDGFDQT  292 (408)
T ss_pred             ----HHHHHHHhcc------CcHHHHHHHHHHhccCCcEEEeehhhhHhhhhccccccccHHHHHHHHHHHHhccCcCcc
Confidence                1222221111      1223344444455567899999988654            12222    222221  123


Q ss_pred             CCcEEEEEeCCchh-----hhccCCcceEEecCCChHHHHHHHhhhhcC
Q 039455          158 FGSRIIITTRDEHV-----LKGHGVTNIYKVRGLDYVEALQLFHLKVSK  201 (216)
Q Consensus       158 ~~~~il~tsr~~~~-----~~~~~~~~~~~l~~l~~~~~~~ll~~~~~~  201 (216)
                      .+.++|++|.-.+.     +.--..+..++++--+..+-+-.|......
T Consensus       293 ~nvkvimatnradtldpallrpgrldrkiefplpdrrqkrlvf~titsk  341 (408)
T KOG0727|consen  293 TNVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFSTITSK  341 (408)
T ss_pred             cceEEEEecCcccccCHhhcCCccccccccCCCCchhhhhhhHHhhhhc
Confidence            45677776654322     111135678888866666777677655433

>PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed

Probab=98.22  E-value=5.1e-06  Score=72.45  Aligned_cols=27  Identities=33%  Similarity=0.438  Sum_probs=24.3

Q ss_pred             CCeeEEEEEecCCCcHHHHHHHHHHHh
Q 039455           47 DDVRFIGICGMGGIGKTTLAKVLYNTL   73 (216)
Q Consensus        47 ~~~~~i~I~G~~GiGKTtL~~~~~~~~   73 (216)
                      +.+..++|+|++|+|||||++.+.+.+
T Consensus       374 ~~G~~vaIvG~SGsGKSTL~~lL~g~~  400 (588)
T PRK11174        374 PAGQRIALVGPSGAGKTSLLNALLGFL  400 (588)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence            456899999999999999999998866

>TIGR02203 MsbA_lipidA lipid A export permease/ATP-binding protein MsbA

Probab=98.22  E-value=2.8e-06  Score=73.77  Aligned_cols=63  Identities=13%  Similarity=0.126  Sum_probs=39.5

Q ss_pred             hhhhHHHHHHHhCCceEEEEEeCCCC------HHHHHHhhcCCCCCCCCcEEEEEeCCchhhhccCCcceEEec
Q 039455          117 VHKGINLIRWRLCRKRVLVVLDDVDQ------LEQLQALAGNHDWFGFGSRIIITTRDEHVLKGHGVTNIYKVR  184 (216)
Q Consensus       117 ~~~~~~~l~~~l~~~~~llvlDd~~~------~~~~~~l~~~~~~~~~~~~il~tsr~~~~~~~~~~~~~~~l~  184 (216)
                      .+...-.+.+.+-.++-++++|+.-+      .+.+...+..+   .++..+|+.||+......  +++.+.++
T Consensus       473 GqrQRiaLARall~~~~illLDEpts~LD~~~~~~i~~~L~~~---~~~~tiIiitH~~~~~~~--~D~ii~l~  541 (571)
T TIGR02203       473 GQRQRLAIARALLKDAPILILDEATSALDNESERLVQAALERL---MQGRTTLVIAHRLSTIEK--ADRIVVMD  541 (571)
T ss_pred             HHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHH---hCCCEEEEEehhhHHHHh--CCEEEEEe
Confidence            34444567888888889999998732      12233323222   246788899998876655  45666553

This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes.

>PRK13642 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=98.21  E-value=8.5e-06  Score=64.33  Aligned_cols=52  Identities=8%  Similarity=0.091  Sum_probs=33.8

Q ss_pred             HHHHHHHhCCceEEEEEeCCCC------HHHHHHhhcCCCCCCCCcEEEEEeCCchhhh
Q 039455          121 INLIRWRLCRKRVLVVLDDVDQ------LEQLQALAGNHDWFGFGSRIIITTRDEHVLK  173 (216)
Q Consensus       121 ~~~l~~~l~~~~~llvlDd~~~------~~~~~~l~~~~~~~~~~~~il~tsr~~~~~~  173 (216)
                      ...+...+..++-++++|+..+      ...+..++..+.. ..+..||++||+.....
T Consensus       148 rv~lAraL~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~-~~g~tiil~sH~~~~~~  205 (277)
T PRK13642        148 RVAVAGIIALRPEIIILDESTSMLDPTGRQEIMRVIHEIKE-KYQLTVLSITHDLDEAA  205 (277)
T ss_pred             HHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHH-hcCCEEEEEeCCHHHHH
Confidence            3457777888888999998732      2333333333320 23678999999987764

>KOG0743 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]

Probab=98.21  E-value=1.7e-05  Score=65.14  Aligned_cols=132  Identities=17%  Similarity=0.174  Sum_probs=73.9

Q ss_pred             eeEEEEEecCCCcHHHHHHHHHHHhcCCCCceEeeccccccccccCchHHHHHHHHHHHhhccccccchhhhHHHHHHHh
Q 039455           49 VRFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLANVREVSVTRGLVPLQEQLLSEVLMERNLIIWDVHKGINLIRWRL  128 (216)
Q Consensus        49 ~~~i~I~G~~GiGKTtL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l  128 (216)
                      .+-..++||||+|||+++.++++.+.  |..  +--.+...    ....                     +    ++.+|
T Consensus       235 KRGYLLYGPPGTGKSS~IaAmAn~L~--ydI--ydLeLt~v----~~n~---------------------d----Lr~LL  281 (457)
T KOG0743|consen  235 KRGYLLYGPPGTGKSSFIAAMANYLN--YDI--YDLELTEV----KLDS---------------------D----LRHLL  281 (457)
T ss_pred             hccceeeCCCCCCHHHHHHHHHhhcC--Cce--EEeeeccc----cCcH---------------------H----HHHHH
Confidence            46789999999999999999998763  321  11101110    0000                     0    22222


Q ss_pred             C--CceEEEEEeCCCCH--------H---H---------HHHhhcC----CCCCCCCcEEEEEeCCchhhhc--c---CC
Q 039455          129 C--RKRVLVVLDDVDQL--------E---Q---------LQALAGN----HDWFGFGSRIIITTRDEHVLKG--H---GV  177 (216)
Q Consensus       129 ~--~~~~llvlDd~~~~--------~---~---------~~~l~~~----~~~~~~~~~il~tsr~~~~~~~--~---~~  177 (216)
                      .  ..+-+|||.|+|..        +   .         +.-++..    .+.|+..--|++||...+-++.  +   ..
T Consensus       282 ~~t~~kSIivIEDIDcs~~l~~~~~~~~~~~~~~~~~VTlSGLLNfiDGlwSscg~ERIivFTTNh~EkLDPALlRpGRm  361 (457)
T KOG0743|consen  282 LATPNKSILLIEDIDCSFDLRERRKKKKENFEGDLSRVTLSGLLNFLDGLWSSCGDERIIVFTTNHKEKLDPALLRPGRM  361 (457)
T ss_pred             HhCCCCcEEEEeecccccccccccccccccccCCcceeehHHhhhhhccccccCCCceEEEEecCChhhcCHhhcCCCcc
Confidence            2  24557777777532        0   0         1112211    1223322245678775432221  1   35


Q ss_pred             cceEEecCCChHHHHHHHhhhhcCCCCCchhHhhhcc
Q 039455          178 TNIYKVRGLDYVEALQLFHLKVSKGKQPTDDRVELSK  214 (216)
Q Consensus       178 ~~~~~l~~l~~~~~~~ll~~~~~~~~~~~~~~~~l~~  214 (216)
                      +..+.+..=+.++...|+.++...+. +++.+.+|.+
T Consensus       362 DmhI~mgyCtf~~fK~La~nYL~~~~-~h~L~~eie~  397 (457)
T KOG0743|consen  362 DMHIYMGYCTFEAFKTLASNYLGIEE-DHRLFDEIER  397 (457)
T ss_pred             eeEEEcCCCCHHHHHHHHHHhcCCCC-CcchhHHHHH
Confidence            67899999999999999999886644 4555555543

>PRK14254 phosphate ABC transporter ATP-binding protein; Provisional

Probab=98.21  E-value=1.1e-05  Score=64.03  Aligned_cols=54  Identities=9%  Similarity=0.125  Sum_probs=35.7

Q ss_pred             hhHHHHHHHhCCceEEEEEeCCC------CHHHHHHhhcCCCCCCCCcEEEEEeCCchhhhcc
Q 039455          119 KGINLIRWRLCRKRVLVVLDDVD------QLEQLQALAGNHDWFGFGSRIIITTRDEHVLKGH  175 (216)
Q Consensus       119 ~~~~~l~~~l~~~~~llvlDd~~------~~~~~~~l~~~~~~~~~~~~il~tsr~~~~~~~~  175 (216)
                      ...-.+...+..++-+|++|+.-      ....+..++..+.  . +..||++||+.+....+
T Consensus       186 ~qrv~LAraL~~~p~lLLLDEPts~LD~~~~~~l~~~L~~~~--~-~~tiii~tH~~~~i~~~  245 (285)
T PRK14254        186 QQRLCIARAIAPDPEVILMDEPASALDPVATSKIEDLIEELA--E-EYTVVIVTHNMQQAARI  245 (285)
T ss_pred             HHHHHHHHHHHcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHh--c-CCEEEEEeCCHHHHHhh
Confidence            33445777788889999999873      2234444444443  2 35799999998776554

>COG0410 LivF ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]

Probab=98.20  E-value=1.9e-05  Score=59.42  Aligned_cols=29  Identities=28%  Similarity=0.493  Sum_probs=25.3

Q ss_pred             CCeeEEEEEecCCCcHHHHHHHHHHHhcC
Q 039455           47 DDVRFIGICGMGGIGKTTLAKVLYNTLKD   75 (216)
Q Consensus        47 ~~~~~i~I~G~~GiGKTtL~~~~~~~~~~   75 (216)
                      +.+.+++|.|++|+|||||++.+++..+.
T Consensus        27 ~~Geiv~llG~NGaGKTTlLkti~Gl~~~   55 (237)
T COG0410          27 ERGEIVALLGRNGAGKTTLLKTIMGLVRP   55 (237)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhCCCCC
Confidence            45689999999999999999999986553

>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs

Probab=98.20  E-value=7.5e-06  Score=60.56  Aligned_cols=33  Identities=24%  Similarity=0.218  Sum_probs=26.7

Q ss_pred             EEEEecCCCcHHHHHHHHHHHhcCCCCceEeec
Q 039455           52 IGICGMGGIGKTTLAKVLYNTLKDQFEASSFLA   84 (216)
Q Consensus        52 i~I~G~~GiGKTtL~~~~~~~~~~~~~~~~~~~   84 (216)
                      ++|.|++|+|||+|+.+++......-..+.|++
T Consensus         2 ~li~G~~G~GKT~l~~~~~~~~~~~g~~v~~~s   34 (187)
T cd01124           2 TLLSGGPGTGKTTFALQFLYAGLARGEPGLYVT   34 (187)
T ss_pred             EEEEcCCCCCHHHHHHHHHHHHHHCCCcEEEEE
Confidence            689999999999999999876544456677775

A related protein is found in archaea.

>PRK07993 DNA polymerase III subunit delta'; Validated

Probab=98.20  E-value=9.4e-05  Score=59.86  Aligned_cols=141  Identities=17%  Similarity=0.088  Sum_probs=80.9

Q ss_pred             hHHHHHHHHHhcCCCCeeEEEEEecCCCcHHHHHHHHHHHhcCCC---------------------CceEeecccccccc
Q 039455           33 SRMEKMNGYLEAGLDDVRFIGICGMGGIGKTTLAKVLYNTLKDQF---------------------EASSFLANVREVSV   91 (216)
Q Consensus        33 ~~~~~l~~~l~~~~~~~~~i~I~G~~GiGKTtL~~~~~~~~~~~~---------------------~~~~~~~~~~~~~~   91 (216)
                      ..-+++.+.+..+ .-...+.++|+.|+||+++|..++..+--.-                     |.+.++.-      
T Consensus         9 ~~~~~l~~~~~~~-rl~HA~Lf~G~~G~Gk~~lA~~~A~~LlC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~p------   81 (334)
T PRK07993          9 PDYEQLVGSYQAG-RGHHALLIQALPGMGDDALIYALSRWLMCQQPQGHKSCGHCRGCQLMQAGTHPDYYTLTP------   81 (334)
T ss_pred             HHHHHHHHHHHcC-CcceEEeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCCCCEEEEec------
Confidence            3445565655543 3357888999999999999999998653211                     11111110      


Q ss_pred             ccCchHHHHHHHHHHHhhccccccchhhhHHHHHHH-----hCCceEEEEEeCCCCH--HHHHHhhcCCCCCCCCcEEEE
Q 039455           92 TRGLVPLQEQLLSEVLMERNLIIWDVHKGINLIRWR-----LCRKRVLVVLDDVDQL--EQLQALAGNHDWFGFGSRIII  164 (216)
Q Consensus        92 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~-----l~~~~~llvlDd~~~~--~~~~~l~~~~~~~~~~~~il~  164 (216)
                                       ......-..+...+ +.+.     ..++.-++|||+++..  .....+++.+..=..+..+|+
T Consensus        82 -----------------~~~~~~I~idqiR~-l~~~~~~~~~~g~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~t~fiL  143 (334)
T PRK07993         82 -----------------EKGKSSLGVDAVRE-VTEKLYEHARLGGAKVVWLPDAALLTDAAANALLKTLEEPPENTWFFL  143 (334)
T ss_pred             -----------------ccccccCCHHHHHH-HHHHHhhccccCCceEEEEcchHhhCHHHHHHHHHHhcCCCCCeEEEE
Confidence                             00000011111111 1111     2345679999999855  456666665543345566666


Q ss_pred             EeCCc-hhhhcc-CCcceEEecCCChHHHHHHHhhh
Q 039455          165 TTRDE-HVLKGH-GVTNIYKVRGLDYVEALQLFHLK  198 (216)
Q Consensus       165 tsr~~-~~~~~~-~~~~~~~l~~l~~~~~~~ll~~~  198 (216)
                      +|+.+ .++..+ ..-..+.+.+++.++..+.+...
T Consensus       144 ~t~~~~~lLpTIrSRCq~~~~~~~~~~~~~~~L~~~  179 (334)
T PRK07993        144 ACREPARLLATLRSRCRLHYLAPPPEQYALTWLSRE  179 (334)
T ss_pred             EECChhhChHHHHhccccccCCCCCHHHHHHHHHHc
Confidence            66654 344443 22356899999999999888654

>PRK14263 phosphate ABC transporter ATP-binding protein; Provisional

Probab=98.20  E-value=2.3e-05  Score=61.30  Aligned_cols=59  Identities=10%  Similarity=0.019  Sum_probs=37.9

Q ss_pred             HHHHHHHhCCceEEEEEeCCC------CHHHHHHhhcCCCCCCCCcEEEEEeCCchhhhccCCcceEEe
Q 039455          121 INLIRWRLCRKRVLVVLDDVD------QLEQLQALAGNHDWFGFGSRIIITTRDEHVLKGHGVTNIYKV  183 (216)
Q Consensus       121 ~~~l~~~l~~~~~llvlDd~~------~~~~~~~l~~~~~~~~~~~~il~tsr~~~~~~~~~~~~~~~l  183 (216)
                      ...+...+..++-++++|+.-      ....+..++..+.   .+..+|++||+.+....+ +++.+.+
T Consensus       157 rv~laral~~~p~llllDEPtsgLD~~~~~~l~~~l~~~~---~~~tii~isH~~~~i~~~-~d~v~~l  221 (261)
T PRK14263        157 RLCIARAIATEPEVLLLDEPCSALDPIATRRVEELMVELK---KDYTIALVTHNMQQAIRV-ADTTAFF  221 (261)
T ss_pred             HHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHh---cCCeEEEEeCCHHHHHHh-CCEEEEE
Confidence            345677777888999999773      2244444444442   246899999998765554 3444444

>TIGR02982 heterocyst_DevA ABC exporter ATP-binding subunit, DevA family

Probab=98.20  E-value=1.2e-05  Score=61.32  Aligned_cols=61  Identities=21%  Similarity=0.237  Sum_probs=38.4

Q ss_pred             HHHHHHHhCCceEEEEEeCCCC------HHHHHHhhcCCCCCCCCcEEEEEeCCchhhhccCCcceEEec
Q 039455          121 INLIRWRLCRKRVLVVLDDVDQ------LEQLQALAGNHDWFGFGSRIIITTRDEHVLKGHGVTNIYKVR  184 (216)
Q Consensus       121 ~~~l~~~l~~~~~llvlDd~~~------~~~~~~l~~~~~~~~~~~~il~tsr~~~~~~~~~~~~~~~l~  184 (216)
                      ...+...+..++-++++|+...      ...+..++..+. ...+..+|++||+.+... + +++.+.+.
T Consensus       149 rv~laral~~~p~illlDEP~~~LD~~~~~~l~~~l~~~~-~~~~~tii~~sh~~~~~~-~-~d~v~~l~  215 (220)
T TIGR02982       149 RVAIARALVHRPKLVLADEPTAALDSKSGRDVVELMQKLA-REQGCTILIVTHDNRILD-V-ADRIVHME  215 (220)
T ss_pred             HHHHHHHHhcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHH-HHcCCEEEEEeCCHHHHh-h-CCEEEEEE
Confidence            4457778888999999998732      233334433332 123688999999987643 3 55655553

Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts.

>PRK13695 putative NTPase; Provisional

Probab=98.20  E-value=3.1e-06  Score=62.06  Aligned_cols=25  Identities=48%  Similarity=0.644  Sum_probs=21.8

Q ss_pred             EEEEEecCCCcHHHHHHHHHHHhcC
Q 039455           51 FIGICGMGGIGKTTLAKVLYNTLKD   75 (216)
Q Consensus        51 ~i~I~G~~GiGKTtL~~~~~~~~~~   75 (216)
                      .++|+|++|+|||||++.+++.+..
T Consensus         2 ~i~ltG~~G~GKTTll~~i~~~l~~   26 (174)
T PRK13695          2 KIGITGPPGVGKTTLVLKIAELLKE   26 (174)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHHH
Confidence            4789999999999999999887653

>cd03282 ABC_MSH4_euk MutS4 homolog in eukaryotes

Probab=98.20  E-value=1.5e-06  Score=65.32  Aligned_cols=24  Identities=33%  Similarity=0.268  Sum_probs=21.6

Q ss_pred             CeeEEEEEecCCCcHHHHHHHHHH
Q 039455           48 DVRFIGICGMGGIGKTTLAKVLYN   71 (216)
Q Consensus        48 ~~~~i~I~G~~GiGKTtL~~~~~~   71 (216)
                      .+..++|+|++|.||||+++.++.
T Consensus        28 ~~~~~~l~G~n~~GKstll~~i~~   51 (204)
T cd03282          28 SSRFHIITGPNMSGKSTYLKQIAL   51 (204)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHH
Confidence            357899999999999999999875

The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c

>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]

Probab=98.20  E-value=1.9e-05  Score=60.37  Aligned_cols=60  Identities=15%  Similarity=0.062  Sum_probs=36.8

Q ss_pred             cchhhhHHHHHHHhCCceEEEEEeCCCC------HHHHHHhhcCCCCCCCCcEEEEEeCCchhhhcc
Q 039455          115 WDVHKGINLIRWRLCRKRVLVVLDDVDQ------LEQLQALAGNHDWFGFGSRIIITTRDEHVLKGH  175 (216)
Q Consensus       115 ~~~~~~~~~l~~~l~~~~~llvlDd~~~------~~~~~~l~~~~~~~~~~~~il~tsr~~~~~~~~  175 (216)
                      +..+....-+.+.++..|-++..|+.-+      ...++..+..+.. .-+.+|++.||+.+.+-.+
T Consensus       137 SGGQQQRVGv~RALAadP~ilLMDEPFgALDpI~R~~lQ~e~~~lq~-~l~kTivfVTHDidEA~kL  202 (309)
T COG1125         137 SGGQQQRVGVARALAADPPILLMDEPFGALDPITRKQLQEEIKELQK-ELGKTIVFVTHDIDEALKL  202 (309)
T ss_pred             CcchhhHHHHHHHHhcCCCeEeecCCccccChhhHHHHHHHHHHHHH-HhCCEEEEEecCHHHHHhh
Confidence            3444555568888889999999997732      2333332222110 1357899999997654443

>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A

Probab=98.19  E-value=2.7e-06  Score=63.68  Aligned_cols=113  Identities=22%  Similarity=0.253  Sum_probs=56.9

Q ss_pred             HHHHHHHHhcCCCCeeEEEEEecCCCcHHHHHHHHHHHhcCCCCceEeeccccccccccCchHHHHHHHHHHHhhccccc
Q 039455           35 MEKMNGYLEAGLDDVRFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLANVREVSVTRGLVPLQEQLLSEVLMERNLII  114 (216)
Q Consensus        35 ~~~l~~~l~~~~~~~~~i~I~G~~GiGKTtL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~  114 (216)
                      .+.+...+..   ..+.++|.|++|+|||++++.+...+...-..+.+.. ...        .....+.....    ...
T Consensus         7 ~~a~~~~l~~---~~~~~~l~G~aGtGKT~~l~~~~~~~~~~g~~v~~~a-pT~--------~Aa~~L~~~~~----~~a   70 (196)
T PF13604_consen    7 REAVRAILTS---GDRVSVLQGPAGTGKTTLLKALAEALEAAGKRVIGLA-PTN--------KAAKELREKTG----IEA   70 (196)
T ss_dssp             HHHHHHHHHC---TCSEEEEEESTTSTHHHHHHHHHHHHHHTT--EEEEE-SSH--------HHHHHHHHHHT----S-E
T ss_pred             HHHHHHHHhc---CCeEEEEEECCCCCHHHHHHHHHHHHHhCCCeEEEEC-CcH--------HHHHHHHHhhC----cch
Confidence            3444444443   2368999999999999999999887766533344432 111        11111221111    001


Q ss_pred             cchhhhHHHHHHHh----------CCceEEEEEeCCCCH--HHHHHhhcCCCCCCCCcEEEEEeCCc
Q 039455          115 WDVHKGINLIRWRL----------CRKRVLVVLDDVDQL--EQLQALAGNHDWFGFGSRIIITTRDE  169 (216)
Q Consensus       115 ~~~~~~~~~l~~~l----------~~~~~llvlDd~~~~--~~~~~l~~~~~~~~~~~~il~tsr~~  169 (216)
                      .+    +..+....          ..+.-+||+|++...  ..+..++....  ..++++|+.-...
T Consensus        71 ~T----i~~~l~~~~~~~~~~~~~~~~~~vliVDEasmv~~~~~~~ll~~~~--~~~~klilvGD~~  131 (196)
T PF13604_consen   71 QT----IHSFLYRIPNGDDEGRPELPKKDVLIVDEASMVDSRQLARLLRLAK--KSGAKLILVGDPN  131 (196)
T ss_dssp             EE----HHHHTTEECCEECCSSCC-TSTSEEEESSGGG-BHHHHHHHHHHS---T-T-EEEEEE-TT
T ss_pred             hh----HHHHHhcCCcccccccccCCcccEEEEecccccCHHHHHHHHHHHH--hcCCEEEEECCcc
Confidence            01    11111101          122349999999765  45666665544  3567888877654

>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]

Probab=98.19  E-value=1.8e-05  Score=68.34  Aligned_cols=132  Identities=17%  Similarity=0.147  Sum_probs=73.6

Q ss_pred             CeeEEEEEecCCCcHHHHHHHHHHHhcCCC-CceEeeccccccccccCchHHHHHHHHHHHhhccccccchhhhHHHHHH
Q 039455           48 DVRFIGICGMGGIGKTTLAKVLYNTLKDQF-EASSFLANVREVSVTRGLVPLQEQLLSEVLMERNLIIWDVHKGINLIRW  126 (216)
Q Consensus        48 ~~~~i~I~G~~GiGKTtL~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~  126 (216)
                      ..+.|.|.|+.|+|||+|++.++.++.... ..+.+++| +.+. ...+.. ++.++                 ...+..
T Consensus       430 ~~~~Ill~G~~GsGKT~L~kal~~~~~k~~~~hv~~v~C-s~l~-~~~~e~-iQk~l-----------------~~vfse  489 (952)
T KOG0735|consen  430 RHGNILLNGPKGSGKTNLVKALFDYYSKDLIAHVEIVSC-STLD-GSSLEK-IQKFL-----------------NNVFSE  489 (952)
T ss_pred             ccccEEEeCCCCCCHhHHHHHHHHHhccccceEEEEEec-hhcc-chhHHH-HHHHH-----------------HHHHHH
Confidence            357899999999999999999998776432 23344442 2211 011111 11111                 122444


Q ss_pred             HhCCceEEEEEeCCCCHH-------------------HHHHhhcCCCCCCCCcEEEEEeCCch-----hhhccCCcceEE
Q 039455          127 RLCRKRVLVVLDDVDQLE-------------------QLQALAGNHDWFGFGSRIIITTRDEH-----VLKGHGVTNIYK  182 (216)
Q Consensus       127 ~l~~~~~llvlDd~~~~~-------------------~~~~l~~~~~~~~~~~~il~tsr~~~-----~~~~~~~~~~~~  182 (216)
                      .+...|-+|+|||++.+-                   -+.++...+...++...+|.|.....     +.+..-...++.
T Consensus       490 ~~~~~PSiIvLDdld~l~~~s~~e~~q~~~~~~rla~flnqvi~~y~~~~~~ia~Iat~qe~qtl~~~L~s~~~Fq~~~~  569 (952)
T KOG0735|consen  490 ALWYAPSIIVLDDLDCLASASSNENGQDGVVSERLAAFLNQVIKIYLKRNRKIAVIATGQELQTLNPLLVSPLLFQIVIA  569 (952)
T ss_pred             HHhhCCcEEEEcchhhhhccCcccCCcchHHHHHHHHHHHHHHHHHHccCcEEEEEEechhhhhcChhhcCccceEEEEe
Confidence            556778899999996431                   12233333331122234455554321     122222356788


Q ss_pred             ecCCChHHHHHHHhhhh
Q 039455          183 VRGLDYVEALQLFHLKV  199 (216)
Q Consensus       183 l~~l~~~~~~~ll~~~~  199 (216)
                      ++++..++..++|....
T Consensus       570 L~ap~~~~R~~IL~~~~  586 (952)
T KOG0735|consen  570 LPAPAVTRRKEILTTIF  586 (952)
T ss_pred             cCCcchhHHHHHHHHHH
Confidence            99999998888887554

>PRK09473 oppD oligopeptide transporter ATP-binding component; Provisional

Probab=98.19  E-value=4.4e-06  Score=67.53  Aligned_cols=28  Identities=32%  Similarity=0.396  Sum_probs=24.6

Q ss_pred             CCeeEEEEEecCCCcHHHHHHHHHHHhc
Q 039455           47 DDVRFIGICGMGGIGKTTLAKVLYNTLK   74 (216)
Q Consensus        47 ~~~~~i~I~G~~GiGKTtL~~~~~~~~~   74 (216)
                      ..+.+++|+|++|+|||||++.+++...
T Consensus        40 ~~Ge~~~ivG~sGsGKSTL~~~l~Gl~~   67 (330)
T PRK09473         40 RAGETLGIVGESGSGKSQTAFALMGLLA   67 (330)
T ss_pred             cCCCEEEEECCCCchHHHHHHHHHcCCC
Confidence            3568999999999999999999998654

>smart00763 AAA_PrkA PrkA AAA domain

Probab=98.19  E-value=3.9e-06  Score=67.70  Aligned_cols=49  Identities=20%  Similarity=0.428  Sum_probs=41.7

Q ss_pred             ccccchhHHHHHHHHHhcC----CCCeeEEEEEecCCCcHHHHHHHHHHHhcC
Q 039455           27 GLVGIASRMEKMNGYLEAG----LDDVRFIGICGMGGIGKTTLAKVLYNTLKD   75 (216)
Q Consensus        27 ~~vgR~~~~~~l~~~l~~~----~~~~~~i~I~G~~GiGKTtL~~~~~~~~~~   75 (216)
                      .++|.++.+.++.+++...    ....++++|+||+|+||||||+.++..+..
T Consensus        52 ~~~G~~~~i~~lv~~l~~~a~g~~~~r~il~L~GPPGsGKStla~~La~~l~~  104 (361)
T smart00763       52 DFFGMEEAIERFVNYFKSAAQGLEERKQILYLLGPVGGGKSSLVECLKRGLEE  104 (361)
T ss_pred             hccCcHHHHHHHHHHHHHHHhcCCCCCcEEEEECCCCCCHHHHHHHHHHHHhh
Confidence            6999999999999987632    335689999999999999999999987654

This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.

>cd01393 recA_like RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response

Probab=98.19  E-value=2.4e-05  Score=59.76  Aligned_cols=48  Identities=23%  Similarity=0.228  Sum_probs=36.0

Q ss_pred             HHHHHHhcCCCCeeEEEEEecCCCcHHHHHHHHHHHhcCCC------CceEeec
Q 039455           37 KMNGYLEAGLDDVRFIGICGMGGIGKTTLAKVLYNTLKDQF------EASSFLA   84 (216)
Q Consensus        37 ~l~~~l~~~~~~~~~i~I~G~~GiGKTtL~~~~~~~~~~~~------~~~~~~~   84 (216)
                      .|...|..+-+.+.++.|+|++|+|||+|+..++.......      ..+.|+.
T Consensus         7 ~lD~~l~GG~~~g~v~~I~G~~GsGKT~l~~~ia~~~~~~~~~~g~~~~v~yi~   60 (226)
T cd01393           7 ALDELLGGGIPTGRITEIFGEFGSGKTQLCLQLAVEAQLPGELGGLEGKVVYID   60 (226)
T ss_pred             HHHHHhCCCCcCCcEEEEeCCCCCChhHHHHHHHHHhhcccccCCCcceEEEEe
Confidence            34455555556678999999999999999999987654443      5567775

RecA couples ATP hydrolysis to DNA strand exchange. While prokaryotes have a single RecA protein, eukaryotes have multiple RecA homologs such as Rad51, DMC1 and Rad55/57. Archaea have the RecA-like homologs radA and radB.

>cd03227 ABC_Class2 ABC-type Class 2 contains systems involved in cellular processes other than transport

Probab=98.19  E-value=6.2e-06  Score=59.80  Aligned_cols=22  Identities=27%  Similarity=0.326  Sum_probs=20.1

Q ss_pred             eEEEEEecCCCcHHHHHHHHHH
Q 039455           50 RFIGICGMGGIGKTTLAKVLYN   71 (216)
Q Consensus        50 ~~i~I~G~~GiGKTtL~~~~~~   71 (216)
                      ...+|+||+|+|||++++.+.-
T Consensus        22 ~~~~i~G~NgsGKS~~l~~i~~   43 (162)
T cd03227          22 SLTIITGPNGSGKSTILDAIGL   43 (162)
T ss_pred             CEEEEECCCCCCHHHHHHHHHH
Confidence            5999999999999999999764

These families are characterised by the fact that the ABC subunit is made up of duplicated, fused ABC modules (ABC2). No known transmembrane proteins or domains are associated with these proteins.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	216
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	6e-30
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	5e-04
1z6t_A	591	APAF-1, apoptotic protease activating factor 1; ca	1e-25
2a5y_B	549	CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis	3e-24
3sfz_A	1249	APAF-1, apoptotic peptidase activating factor 1; a	3e-16
2qby_B	384	CDC6 homolog 3, cell division control protein 6 ho	2e-04

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score =  115 bits (289), Expect = 6e-30
 Identities = 48/238 (20%), Positives = 91/238 (38%), Gaps = 38/238 (15%)

Query: 1   RESELIKDIVKEISKRL---NPTFPSAVDGLVGIASRMEKMNGYLEA--GLDDVRFIGIC 55
           R+  ++  +  E   RL   N  F       V   SR++      +A   L   + + I 
Sbjct: 103 RQPSMMTRMYIEQRDRLYNDNQVFA---KYNV---SRLQPYLKLRQALLELRPAKNVLID 156

Query: 56  GMGGIGKTTLA-KVLYN-TLKDQFEASSFLANVREVSVTRGLVPLQEQLLSEV---LMER 110
           G+ G GKT +A  V  +  ++ + +   F  N++  +    ++ + ++LL ++      R
Sbjct: 157 GVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSR 216

Query: 111 NLIIWDVHKGINLIRWRLCR-------KRVLVVLDDVDQLEQLQALAGNHDWFGFGSRII 163
           +    ++   I+ I+  L R       +  L+VL +V   +   A       F    +I+
Sbjct: 217 SDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNA-------FNLSCKIL 269

Query: 164 ITTRDEHV---LKGHGVTNIYKV---RGLDYVEALQLFHLKVSKGKQPTDDRVELSKC 215
           +TTR + V   L     T+I        L   E   L    +    +P D   E+   
Sbjct: 270 LTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYL--DCRPQDLPREVLTT 325

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 39.8 bits (92), Expect = 5e-04
 Identities = 27/190 (14%), Positives = 58/190 (30%), Gaps = 43/190 (22%)

Query: 1   RESELIKDIVKEISKRLNPTFPSAVDGLVGIASRMEKMNGYLEAG------------LDD 48
              E + ++++++  +++P + S  D    I  R+  +   L               L +
Sbjct: 193 NSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLN 252

Query: 49  V-------------------RFIGICGMGGIGKTTLAKVLYNTLKDQF---EASSFLANV 86
           V                   RF  +        TT   +  +         E  S L   
Sbjct: 253 VQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTT--HISLDHHSMTLTPDEVKSLLLKY 310

Query: 87  REVSVT------RGLVPLQEQLLSEVLMERNLIIWDVHKGINLIRWRLCRKRVLVVLDDV 140
            +              P +  +++E + +  L  WD  K +N  +     +  L VL+  
Sbjct: 311 LDCRPQDLPREVLTTNPRRLSIIAESIRD-GLATWDNWKHVNCDKLTTIIESSLNVLEPA 369

Query: 141 DQLEQLQALA 150
           +  +    L+
Sbjct: 370 EYRKMFDRLS 379

>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens} Length = 591

 Score =  102 bits (257), Expect = 1e-25
 Identities = 41/208 (19%), Positives = 74/208 (35%), Gaps = 17/208 (8%)

Query: 4   ELIKDIVKEISKRLNPT-FPSAVDGLVGIASRMEKMNGYLEAGLDDVRFIGICGMGGIGK 62
           + +  I   +   L     P      V     +  +   L     +  ++ I GM G GK
Sbjct: 101 DSVSGITSYVRTVLCEGGVPQRPVVFVTRKKLVNAIQQKLSKLKGEPGWVTIHGMAGCGK 160

Query: 63  TTLAKVLYN---TLKDQFEASSFLANVREVSVTRGLVPLQEQL--LSEVLMERNLIIWDV 117
           + LA         L+  F       +V +   +  L+ LQ     L +       +  ++
Sbjct: 161 SVLAAEAVRDHSLLEGCFPGGVHWVSVGKQDKSGLLMKLQNLCTRLDQDESFSQRLPLNI 220

Query: 118 HKGINLIRWRLCRK--RVLVVLDDVDQLEQLQALAGNHDWFGFGSRIIITTRDEHVLKGH 175
            +  + +R  + RK  R L++LDDV     L         F    +I++TTRD+ V    
Sbjct: 221 EEAKDRLRILMLRKHPRSLLILDDVWDSWVL-------KAFDSQCQILLTTRDKSVTDSV 273

Query: 176 GVTN--IYKVRGLDYVEALQLFHLKVSK 201
                 +     L   + L++  L V+ 
Sbjct: 274 MGPKYVVPVESSLGKEKGLEILSLFVNM 301

>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A* Length = 549

 Score = 98.9 bits (246), Expect = 3e-24
 Identities = 28/193 (14%), Positives = 56/193 (29%), Gaps = 18/193 (9%)

Query: 33  SRMEKMNGYLEAGLD-DVRFIGICGMGGIGKTTLAKVLYN---TLKDQFEASSFLANV-- 86
             ++++   L+   D D  F+ + G  G GK+ +A    +    L      S        
Sbjct: 135 YHVDRVIKKLDEMCDLDSFFLFLHGRAGSGKSVIASQALSKSDQLIGINYDSIVWLKDSG 194

Query: 87  ----REVSVTRGLVPLQEQLLSEVLMERNLIIWDVHKGINLIRWRLCRKRVLVVLDDVDQ 142
                   +   ++ + +     +       +  V     +    + R   L V DDV Q
Sbjct: 195 TAPKSTFDLFTDILLMLKSEDDLLNFPSVEHVTSVVLKRMICNALIDRPNTLFVFDDVVQ 254

Query: 143 LEQLQALAGNHDWFGFGSRIIITTRDEHVLKG-HGVTNIYKVRGLDYVEALQLFHLKVSK 201
            E +              R ++TTRD  +           +V  L+  E           
Sbjct: 255 EETI------RWAQELRLRCLVTTRDVEISNAASQTCEFIEVTSLEIDECYDFLEAYGMP 308

Query: 202 GKQPTDDRVELSK 214
                 +  ++  
Sbjct: 309 MPVGEKE-EDVLN 320

>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A* Length = 1249

 Score = 76.0 bits (187), Expect = 3e-16
 Identities = 41/175 (23%), Positives = 75/175 (42%), Gaps = 18/175 (10%)

Query: 47  DDVRFIGICGMGGIGKTTLA-KVLYN--TLKDQFEASSF---LANVREVSVTRGLVPLQE 100
            +  ++ I GM G GK+ LA + + +   L+  F        +    +  +   L  L  
Sbjct: 145 GEPGWVTIYGMAGCGKSVLAAEAVRDHSLLEGCFSGGVHWVSIGKQDKSGLLMKLQNLCM 204

Query: 101 QLLSEVLMERNLIIWDVHKGINLIRWRLCRK--RVLVVLDDVDQLEQLQALAGNHDWFGF 158
           +L  E    + L + ++ +  + +R  + RK  R L++LDDV     L+A       F  
Sbjct: 205 RLDQEESFSQRLPL-NIEEAKDRLRVLMLRKHPRSLLILDDVWDPWVLKA-------FDN 256

Query: 159 GSRIIITTRDEHVLKG-HGVTNIYKVR-GLDYVEALQLFHLKVSKGKQPTDDRVE 211
             +I++TTRD+ V     G  ++  V  GL   + L++  L V+  K+       
Sbjct: 257 QCQILLTTRDKSVTDSVMGPKHVVPVESGLGREKGLEILSLFVNMKKEDLPAEAH 311

>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus} Length = 384

 Score = 40.5 bits (94), Expect = 2e-04
 Identities = 25/145 (17%), Positives = 53/145 (36%), Gaps = 10/145 (6%)

Query: 7   KDIVKEISKRLNPTFPSAVDGLVGIASRMEKMNGYLEAGLDDVRF--IGICGMGGIGKTT 64
            +++K     ++P        +      +      +   + +         G+ G GKT 
Sbjct: 3   MEVIKNPKVFIDPLS--VFKEIPFREDILRDAAIAIRYFVKNEVKFSNLFLGLTGTGKTF 60

Query: 65  LAKVLYNTLKDQFEASSFLANVREVSVTRGLVPLQEQLLSEVLMERNLIIWDVHKGINL- 123
           ++K ++N +++  +      +V++  V    V    Q +   L  +         GINL 
Sbjct: 61  VSKYIFNEIEEVKKEDEEYKDVKQAYVNCREVGGTPQAVLSSLAGKLTGFSVPKHGINLG 120

Query: 124 -----IRWRLCRKRVLVVLDDVDQL 143
                I+      R ++ LD+VD L
Sbjct: 121 EYIDKIKNGTRNIRAIIYLDEVDTL 145

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	216
2a5y_B	549	CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis	99.94
3sfz_A	1249	APAF-1, apoptotic peptidase activating factor 1; a	99.88
1z6t_A	591	APAF-1, apoptotic protease activating factor 1; ca	99.87
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	99.85
2qen_A	350	Walker-type ATPase; unknown function; HET: ADP; 2.	99.66
2qby_B	384	CDC6 homolog 3, cell division control protein 6 ho	99.66
1w5s_A	412	Origin recognition complex subunit 2 ORC2; replica	99.65
2v1u_A	387	Cell division control protein 6 homolog; DNA repli	99.63
2qby_A	386	CDC6 homolog 1, cell division control protein 6 ho	99.62
1fnn_A	389	CDC6P, cell division control protein 6; ORC1, AAA	99.62
2fna_A	357	Conserved hypothetical protein; structural genomic	99.61
1njg_A	250	DNA polymerase III subunit gamma; rossman-like fol	99.55
2chg_A	226	Replication factor C small subunit; DNA-binding pr	99.52
3te6_A	318	Regulatory protein SIR3; heterochromatin, gene sil	99.43
1jbk_A	195	CLPB protein; beta barrel, chaperone; 1.80A {Esche	99.4
3h4m_A	285	Proteasome-activating nucleotidase; ATPase, PAN, A	99.38
1sxj_B	323	Activator 1 37 kDa subunit; clamp loader, processi	99.34
1iqp_A	327	RFCS; clamp loader, extended AAA-ATPase domain, co	99.3
2chq_A	319	Replication factor C small subunit; DNA-binding pr	99.28
3eie_A	322	Vacuolar protein sorting-associated protein 4; AAA	99.27
3d8b_A	357	Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, s	99.25
1jr3_A	373	DNA polymerase III subunit gamma; processivity, pr	99.24
2z4s_A	440	Chromosomal replication initiator protein DNAA; AA	99.23
1xwi_A	322	SKD1 protein; VPS4B, AAA ATPase, protein transport	99.21
1sxj_E	354	Activator 1 40 kDa subunit; clamp loader, processi	99.2
3bos_A	242	Putative DNA replication factor; P-loop containing	99.2
3syl_A	309	Protein CBBX; photosynthesis, rubisco activase, AA	99.2
4b4t_J	405	26S protease regulatory subunit 8 homolog; hydrola	99.19
2qz4_A	262	Paraplegin; AAA+, SPG7, protease, ADP, structural	99.19
1l8q_A	324	Chromosomal replication initiator protein DNAA; AA	99.18
3cf0_A	301	Transitional endoplasmic reticulum ATPase; AAA, P9	99.18
3uk6_A	368	RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding	99.16
4b4t_L	437	26S protease subunit RPT4; hydrolase, AAA-atpases,	99.15
3vfd_A	389	Spastin; ATPase, microtubule severing, hydrolase;	99.14
2qp9_X	355	Vacuolar protein sorting-associated protein 4; ATP	99.14
2zan_A	444	Vacuolar protein sorting-associating protein 4B; S	99.14
1sxj_A	516	Activator 1 95 kDa subunit; clamp loader, processi	99.14
3pxg_A	468	Negative regulator of genetic competence CLPC/MEC;	99.12
4b4t_H	467	26S protease regulatory subunit 7 homolog; hydrola	99.12
4b4t_M	434	26S protease regulatory subunit 6A; hydrolase, AAA	99.11
3pvs_A	447	Replication-associated recombination protein A; ma	99.1
1hqc_A	324	RUVB; extended AAA-ATPase domain, complex with nuc	99.1
1d2n_A	272	N-ethylmaleimide-sensitive fusion protein; hexamer	99.1
2p65_A	187	Hypothetical protein PF08_0063; CLPB, malaria, str	99.09
3b9p_A	297	CG5977-PA, isoform A; AAA ATPase, ATP-binding, nuc	99.08
3u61_B	324	DNA polymerase accessory protein 44; AAA+, ATP hyd	99.08
3n70_A	145	Transport activator; sigma-54, ntpase, PSI, MCSG,	99.08
4b4t_I	437	26S protease regulatory subunit 4 homolog; hydrola	99.08
3hu3_A	489	Transitional endoplasmic reticulum ATPase; VCP, tr	99.08
1sxj_D	353	Activator 1 41 kDa subunit; clamp loader, processi	99.07
3pfi_A	338	Holliday junction ATP-dependent DNA helicase RUVB;	99.07
4b4t_K	428	26S protease regulatory subunit 6B homolog; hydrol	99.03
2r62_A	268	Cell division protease FTSH homolog; ATPase domain	99.03
1qvr_A	854	CLPB protein; coiled coil, AAA ATPase, chaperone;	99.02
1r6b_X	758	CLPA protein; AAA+, N-terminal domain, CLPS, cryst	99.01
2ce7_A	476	Cell division protein FTSH; metalloprotease; HET:	98.99
1lv7_A	257	FTSH; alpha/beta domain, four helix bundle, hydrol	98.97
3ec2_A	180	DNA replication protein DNAC; helicase loader, rep	98.96
3pxi_A	758	Negative regulator of genetic competence CLPC/MEC;	98.95
1sxj_C	340	Activator 1 40 kDa subunit; clamp loader, processi	98.94
1a5t_A	334	Delta prime, HOLB; zinc finger, DNA replication; 2	98.91
1ojl_A	304	Transcriptional regulatory protein ZRAR; response	98.89
2kjq_A	149	DNAA-related protein; solution structure, NESG, st	98.89
2bjv_A	265	PSP operon transcriptional activator; AAA, transcr	98.88
2gno_A	305	DNA polymerase III, gamma subunit-related protein;	98.86
4fcw_A	311	Chaperone protein CLPB; AAA domain; HET: ADP; 2.35	98.85
3cf2_A	806	TER ATPase, transitional endoplasmic reticulum ATP	98.83
1ixz_A	254	ATP-dependent metalloprotease FTSH; AAA domain fol	98.82
3co5_A	143	Putative two-component system transcriptional RES	98.81
1ofh_A	310	ATP-dependent HSL protease ATP-binding subunit HSL	98.8
2cbz_A	237	Multidrug resistance-associated protein 1; ABC pro	98.78
1iy2_A	278	ATP-dependent metalloprotease FTSH; AAA domain fol	98.73
1vpl_A	256	ABC transporter, ATP-binding protein; TM0544, stru	98.72
3t15_A	293	Ribulose bisphosphate carboxylase/oxygenase activ	98.72
4gp7_A	171	Metallophosphoesterase; polynucleotide kinase phos	98.72
3pxi_A	758	Negative regulator of genetic competence CLPC/MEC;	98.71
2pcj_A	224	ABC transporter, lipoprotein-releasing system ATP-	98.71
2nq2_C	253	Hypothetical ABC transporter ATP-binding protein H	98.71
2pze_A	229	Cystic fibrosis transmembrane conductance regulat;	98.7
2dhr_A	499	FTSH; AAA+ protein, hexameric Zn metalloprotease,	98.7
3m6a_A	543	ATP-dependent protease LA 1; alpha, beta, ATP-bind	98.69
2olj_A	263	Amino acid ABC transporter; ABC domain, ATPase, hy	98.68
3tui_C	366	Methionine import ATP-binding protein METN; ABC-tr	98.68
3tif_A	235	Uncharacterized ABC transporter ATP-binding prote;	98.65
1b0u_A	262	Histidine permease; ABC transporter, transport pro	98.64
1ji0_A	240	ABC transporter; ATP binding protein, structural g	98.64
1sgw_A	214	Putative ABC transporter; structural genomics, P p	98.62
2x8a_A	274	Nuclear valosin-containing protein-like; nuclear p	98.62
2pjz_A	263	Hypothetical protein ST1066; ATP binding protein,	98.62
2yz2_A	266	Putative ABC transporter ATP-binding protein TM_0;	98.62
1ypw_A	806	Transitional endoplasmic reticulum ATPase; AAA, P9	98.62
2bbs_A	290	Cystic fibrosis transmembrane conductance regulato	98.61
3gfo_A	275	Cobalt import ATP-binding protein CBIO 1; structur	98.6
1g6h_A	257	High-affinity branched-chain amino acid transport	98.59
1z47_A	355	CYSA, putative ABC-transporter ATP-binding protein	98.58
2zu0_C	267	Probable ATP-dependent transporter SUFC; iron-sulf	98.57
2it1_A	362	362AA long hypothetical maltose/maltodextrin trans	98.56
2qi9_C	249	Vitamin B12 import ATP-binding protein BTUD; inner	98.56
4g1u_C	266	Hemin import ATP-binding protein HMUV; membrane tr	98.55
2w58_A	202	DNAI, primosome component (helicase loader); ATP-b	98.55
3rlf_A	381	Maltose/maltodextrin import ATP-binding protein M;	98.55
2d2e_A	250	SUFC protein; ABC-ATPase, SUF protein, 310-helix,	98.54
2cvh_A	220	DNA repair and recombination protein RADB; filamen	98.54
2ehv_A	251	Hypothetical protein PH0186; KAIC, RECA ATPase, un	98.53
4a74_A	231	DNA repair and recombination protein RADA; hydrola	98.52
3fvq_A	359	Fe(3+) IONS import ATP-binding protein FBPC; nucle	98.52
2onk_A	240	Molybdate/tungstate ABC transporter, ATP-binding p	98.52
2ixe_A	271	Antigen peptide transporter 1; ABC ATPase, hydrola	98.51
1r6b_X	758	CLPA protein; AAA+, N-terminal domain, CLPS, cryst	98.51
2yyz_A	359	Sugar ABC transporter, ATP-binding protein; sugar	98.5
3d31_A	348	Sulfate/molybdate ABC transporter, ATP-binding pro	98.49
2ff7_A	247	Alpha-hemolysin translocation ATP-binding protein	98.49
1mv5_A	243	LMRA, multidrug resistance ABC transporter ATP-bin	98.48
1um8_A	376	ATP-dependent CLP protease ATP-binding subunit CL;	98.47
3cf2_A	806	TER ATPase, transitional endoplasmic reticulum ATP	98.46
3jvv_A	356	Twitching mobility protein; hexameric P-loop ATPas	98.45
1oxx_K	353	GLCV, glucose, ABC transporter, ATP binding protei	98.45
1v43_A	372	Sugar-binding transport ATP-binding protein; ATPas	98.45
1g29_1	372	MALK, maltose transport protein MALK; ATPase, acti	98.44
2c9o_A	456	RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-	98.44
1ye8_A	178	Protein THEP1, hypothetical UPF0334 kinase-like pr	98.43
2w0m_A	235	SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus	98.43
3nbx_X	500	ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structu	98.41
2ghi_A	260	Transport protein; multidrug resistance protein, M	98.41
1qvr_A	854	CLPB protein; coiled coil, AAA ATPase, chaperone;	98.4
2ihy_A	279	ABC transporter, ATP-binding protein; ATPase, ABC	98.4
3j16_B	608	RLI1P; ribosome recycling, translation, eukarya, r	98.39
3gd7_A	390	Fusion complex of cystic fibrosis transmembrane co	98.38
3ozx_A	538	RNAse L inhibitor; ATP binding cassette protein, h	98.38
3bk7_A	607	ABC transporter ATP-binding protein; ABC ATPase, i	98.35
1yqt_A	538	RNAse L inhibitor; ATP-binding cassette, ribosome	98.34
3nh6_A	306	ATP-binding cassette SUB-family B member 6, mitoc;	98.34
2eyu_A	261	Twitching motility protein PILT; pilus retraction	98.33
1yqt_A	538	RNAse L inhibitor; ATP-binding cassette, ribosome	98.32
1ypw_A	806	Transitional endoplasmic reticulum ATPase; AAA, P9	98.29
3ozx_A	538	RNAse L inhibitor; ATP binding cassette protein, h	98.26
3bk7_A	607	ABC transporter ATP-binding protein; ABC ATPase, i	98.26
2qgz_A	308	Helicase loader, putative primosome component; str	98.25
1tf7_A	525	KAIC; homohexamer, hexamer, circadian clock protei	98.24
3j16_B	608	RLI1P; ribosome recycling, translation, eukarya, r	98.21
2ewv_A	372	Twitching motility protein PILT; pilus retraction	98.21
1in4_A	334	RUVB, holliday junction DNA helicase RUVB; AAA+-cl	98.18
2pt7_A	330	CAG-ALFA; ATPase, protein-protein complex, type IV	98.18
2iw3_A	986	Elongation factor 3A; acetylation, ATP-binding, pr	98.16
3b5x_A	582	Lipid A export ATP-binding/permease protein MSBA;	98.16
1u0j_A	267	DNA replication protein; AAA+ protein, P-loop atpa	98.09
3hr8_A	356	Protein RECA; alpha and beta proteins (A/B, A+B),	98.07
3c8u_A	208	Fructokinase; YP_612366.1, putative fructose trans	98.06
1rz3_A	201	Hypothetical protein rbstp0775; MCSG, structural g	98.06
1nlf_A	279	Regulatory protein REPA; replicative DNA helicase	98.05
4a82_A	578	Cystic fibrosis transmembrane conductance regulat;	98.02
1n0w_A	243	DNA repair protein RAD51 homolog 1; DNA repair, ho	98.0
3qf4_B	598	Uncharacterized ABC transporter ATP-binding prote	97.99
3qf4_A	587	ABC transporter, ATP-binding protein; multidrug tr	97.98
1g5t_A	196	COB(I)alamin adenosyltransferase; P-loop protein,	97.98
1vma_A	306	Cell division protein FTSY; TM0570, structural gen	97.95
2r44_A	331	Uncharacterized protein; putative ATPase, structur	97.95
3b60_A	582	Lipid A export ATP-binding/permease protein MSBA;	97.94
2vhj_A	331	Ntpase P4, P4; non- hydrolysable ATP analogue, hyd	97.94
3ux8_A	670	Excinuclease ABC, A subunit; UVRA, nucleotide exci	97.92
2iw3_A	986	Elongation factor 3A; acetylation, ATP-binding, pr	97.91
2yl4_A	595	ATP-binding cassette SUB-family B member 10, mitoc	97.9
3thx_A	934	DNA mismatch repair protein MSH2; ABC family ATPas	97.89
2o8b_B	1022	DNA mismatch repair protein MSH6; DNA damage respo	97.87
1zu4_A	320	FTSY; GTPase, signal recognition particle, SRP, re	97.86
3hws_A	363	ATP-dependent CLP protease ATP-binding subunit CL;	97.86
3dzd_A	368	Transcriptional regulator (NTRC family); sigma43 a	97.84
2b8t_A	223	Thymidine kinase; deoxyribonucleoside kinase, zinc	97.83
1zp6_A	191	Hypothetical protein ATU3015; alpha-beta protein.,	97.83
1v5w_A	343	DMC1, meiotic recombination protein DMC1/LIM15 hom	97.82
2zr9_A	349	Protein RECA, recombinase A; recombination, RECA m	97.82
1htw_A	158	HI0065; nucleotide-binding fold, structural genomi	97.82
3io5_A	333	Recombination and repair protein; storage dimer, i	97.81
3tr0_A	205	Guanylate kinase, GMP kinase; purines, pyrimidines	97.81
3thx_B	918	DNA mismatch repair protein MSH3; ABC family ATPas	97.81
4aby_A	415	DNA repair protein RECN; hydrolase, double strand	97.81
1kgd_A	180	CASK, peripheral plasma membrane CASK; maguk, guan	97.78
3uie_A	200	Adenylyl-sulfate kinase 1, chloroplastic; rossmann	97.77
1pzn_A	349	RAD51, DNA repair and recombination protein RAD51,	97.77
1qhx_A	178	CPT, protein (chloramphenicol phosphotransferase);	97.77
2z43_A	324	DNA repair and recombination protein RADA; archaea	97.76
1ewq_A	765	DNA mismatch repair protein MUTS; multiple domains	97.76
3asz_A	211	Uridine kinase; cytidine phosphorylation, transfer	97.76
1znw_A	207	Guanylate kinase, GMP kinase; ATP:GMP-phosphotrans	97.75
4f4c_A	1321	Multidrug resistance protein PGP-1; ABC transporte	97.74
4eun_A	200	Thermoresistant glucokinase; putative sugar kinase	97.74
3e70_C	328	DPA, signal recognition particle receptor; FTSY, S	97.74
3tau_A	208	Guanylate kinase, GMP kinase; structural genomics,	97.73
3a00_A	186	Guanylate kinase, GMP kinase; domain movement, dim	97.73
1knq_A	175	Gluconate kinase; ALFA/beta structure, transferase	97.72
1s96_A	219	Guanylate kinase, GMP kinase; E.coli, dimer, SAD,	97.72
1ny5_A	387	Transcriptional regulator (NTRC family); AAA+ ATPa	97.71
1g8p_A	350	Magnesium-chelatase 38 kDa subunit; parallel beta	97.71
3umf_A	217	Adenylate kinase; rossmann fold, transferase; 2.05	97.71
1kag_A	173	SKI, shikimate kinase I; transferase, structural g	97.7
2px0_A	296	Flagellar biosynthesis protein FLHF; SRP GTPase, f	97.69
1wb9_A	800	DNA mismatch repair protein MUTS; DNA-binding, ATP	97.69
1lvg_A	198	Guanylate kinase, GMP kinase; transferase; HET: AD	97.69
1odf_A	290	YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser	97.68
1ex7_A	186	Guanylate kinase; substrate-induced FIT, domain mo	97.68
1rj9_A	304	FTSY, signal recognition protein; SRP-GTPase domai	97.67
3b9q_A	302	Chloroplast SRP receptor homolog, alpha subunit CP	97.67
1tf7_A	525	KAIC; homohexamer, hexamer, circadian clock protei	97.67
3vaa_A	199	Shikimate kinase, SK; structural genomics, center	97.67
3kb2_A	173	SPBC2 prophage-derived uncharacterized protein YOR	97.66
2jeo_A	245	Uridine-cytidine kinase 1; UCK, transferase, ATP-b	97.65
2bdt_A	189	BH3686; alpha-beta protein, structural genomics, P	97.64
1z6g_A	218	Guanylate kinase; structural genomics, SGC, struct	97.64
2j41_A	207	Guanylate kinase; GMP, GMK, transferase, ATP-bindi	97.63
3ux8_A	670	Excinuclease ABC, A subunit; UVRA, nucleotide exci	97.61
3ney_A	197	55 kDa erythrocyte membrane protein; structural ge	97.61
3tlx_A	243	Adenylate kinase 2; structural genomics, structura	97.6
3kl4_A	433	SRP54, signal recognition 54 kDa protein; signal r	97.59
1xp8_A	366	RECA protein, recombinase A; recombination, radior	97.59
1nks_A	194	Adenylate kinase; thermophilic, transferase; HET:	97.59
1tue_A	212	Replication protein E1; helicase, replication, E1E	97.59
2dr3_A	247	UPF0273 protein PH0284; RECA superfamily ATPase, h	97.57
2rhm_A	193	Putative kinase; P-loop containing nucleoside trip	97.57
2i1q_A	322	DNA repair and recombination protein RADA; ATPase,	97.57
3k1j_A	604	LON protease, ATP-dependent protease LON; ATP-bind	97.57
3trf_A	185	Shikimate kinase, SK; amino acid biosynthesis, tra	97.57
1j8m_F	297	SRP54, signal recognition 54 kDa protein; signalin	97.57
2og2_A	359	Putative signal recognition particle receptor; nuc	97.57
3aez_A	312	Pantothenate kinase; transferase, homodimer, COA b	97.57
1gvn_B	287	Zeta; postsegregational killing system, plasmid; 1	97.57
3lda_A	400	DNA repair protein RAD51; DNA binding protein, ATP	97.56
2i3b_A	189	HCR-ntpase, human cancer-related ntpase; AAA, ross	97.56
2qor_A	204	Guanylate kinase; phosphotransferase, purine metab	97.56
3tqc_A	321	Pantothenate kinase; biosynthesis of cofactors, pr	97.55
3sr0_A	206	Adenylate kinase; phosphoryl transfer analogue, AL	97.55
2yvu_A	186	Probable adenylyl-sulfate kinase; transferase, str	97.54
3cm0_A	186	Adenylate kinase; ATP-binding, cytoplasm, nucleoti	97.54
1ly1_A	181	Polynucleotide kinase; PNK, phosphatase, transfera	97.53
1sq5_A	308	Pantothenate kinase; P-loop, transferase; HET: PAU	97.53
1kht_A	192	Adenylate kinase; phosphotransferase, signaling pr	97.53
3b85_A	208	Phosphate starvation-inducible protein; PHOH2, ATP	97.53
3t61_A	202	Gluconokinase; PSI-biology, structural genomics, p	97.53
2ze6_A	253	Isopentenyl transferase; crown GALL tumor, cytokin	97.52
2bbw_A	246	Adenylate kinase 4, AK4; nucleotide kinase, nucleo	97.52
3g5u_A	1284	MCG1178, multidrug resistance protein 1A; P-glycop	97.51
2v9p_A	305	Replication protein E1; AAA+ molecular motor, DNA	97.5
1cke_A	227	CK, MSSA, protein (cytidine monophosphate kinase);	97.49
3lnc_A	231	Guanylate kinase, GMP kinase; ALS collaborative cr	97.49
2qt1_A	207	Nicotinamide riboside kinase 1; non-protein kinase	97.49
3lw7_A	179	Adenylate kinase related protein (ADKA-like); AMP,	97.48
3iij_A	180	Coilin-interacting nuclear ATPase protein; alpha a	97.48
2pez_A	179	Bifunctional 3'-phosphoadenosine 5'- phosphosulfat	97.47
2yhs_A	503	FTSY, cell division protein FTSY; cell cycle, prot	97.47
1y63_A	184	LMAJ004144AAA protein; structural genomics, protei	97.46
4e22_A	252	Cytidylate kinase; P-loop, CMP/ATP binding, transf	97.46
2c95_A	196	Adenylate kinase 1; transferase, AP4A, nucleotide	97.46
1via_A	175	Shikimate kinase; structural genomics, transferase	97.45
2p5t_B	253	PEZT; postsegregational killing system, phosphoryl	97.45
2plr_A	213	DTMP kinase, probable thymidylate kinase; TMP-bind	97.44
1nn5_A	215	Similar to deoxythymidylate kinase (thymidylate K;	97.44
2if2_A	204	Dephospho-COA kinase; alpha-beta protein, structur	97.44
1tev_A	196	UMP-CMP kinase; ploop, NMP binding region, LID reg	97.43
2qm8_A	337	GTPase/ATPase; G protein, G3E, metallochaperone, c	97.41
3g5u_A	1284	MCG1178, multidrug resistance protein 1A; P-glycop	97.41
1p9r_A	418	General secretion pathway protein E; bacterial typ	97.41
4f4c_A	1321	Multidrug resistance protein PGP-1; ABC transporte	97.4
2iyv_A	184	Shikimate kinase, SK; transferase, aromatic amino	97.39
1zuh_A	168	Shikimate kinase; alpha-beta protein, transferase;	97.39
2bwj_A	199	Adenylate kinase 5; phosphoryl transfer reaction,	97.39
3bh0_A	315	DNAB-like replicative helicase; ATPase, replicatio	97.39
2wwf_A	212	Thymidilate kinase, putative; transferase, malaria	97.38
1cr0_A	296	DNA primase/helicase; RECA-type protein fold, tran	97.38
1jjv_A	206	Dephospho-COA kinase; P-loop nucleotide-binding fo	97.38
1svm_A	377	Large T antigen; AAA+ fold, viral protein; HET: AT	97.38
3cmu_A	2050	Protein RECA, recombinase A; homologous recombinat	97.38
2jaq_A	205	Deoxyguanosine kinase; transferase, deoxyribonucle	97.37
2cdn_A	201	Adenylate kinase; phosphoryl transfer, associative	97.37
2q6t_A	444	DNAB replication FORK helicase; hydrolase; 2.90A {	97.36
1ls1_A	295	Signal recognition particle protein; FFH, SRP54, S	97.36
1xjc_A	169	MOBB protein homolog; structural genomics, midwest	97.36
1ukz_A	203	Uridylate kinase; transferase; HET: ADP AMP; 1.90A	97.36
1g41_A	444	Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dep	97.34
2vli_A	183	Antibiotic resistance protein; transferase, tunica	97.34
1uf9_A	203	TT1252 protein; P-loop, nucleotide binding domain,	97.34
1aky_A	220	Adenylate kinase; ATP:AMP phosphotransferase, myok	97.34
1qf9_A	194	UMP/CMP kinase, protein (uridylmonophosphate/cytid	97.34
1uj2_A	252	Uridine-cytidine kinase 2; alpha/beta mononucleoti	97.33
3fb4_A	216	Adenylate kinase; psychrophIle, phosphotransferase	97.33
4a1f_A	338	DNAB helicase, replicative DNA helicase; hydrolase	97.32
3dm5_A	443	SRP54, signal recognition 54 kDa protein; protein-	97.31
2v54_A	204	DTMP kinase, thymidylate kinase; nucleotide biosyn	97.31
2fz4_A	237	DNA repair protein RAD25; RECA-like domain, DNA da	97.3
3sop_A	270	Neuronal-specific septin-3; hydrolase; HET: GDP; 2	97.3
1e6c_A	173	Shikimate kinase; phosphoryl transfer, ADP, shikim	97.29
3dl0_A	216	Adenylate kinase; phosphotransferase, zinc coordin	97.29
1tq4_A	413	IIGP1, interferon-inducible GTPase; interferon gam	97.29
1m7g_A	211	Adenylylsulfate kinase; APS kinase, transferase, s	97.29
2pt5_A	168	Shikimate kinase, SK; aromatic amino acid biosynth	97.29
4akg_A	2695	Glutathione S-transferase class-MU 26 kDa isozyme	97.29
2pbr_A	195	DTMP kinase, thymidylate kinase; transferase, nucl	97.28
2ga8_A	359	Hypothetical 39.9 kDa protein; YFR007W, YFH7, unkn	97.28
2vf7_A	842	UVRA2, excinuclease ABC, subunit A.; DNA-binding p	97.28
3p32_A	355	Probable GTPase RV1496/MT1543; structural genomics	97.27
2z0h_A	197	DTMP kinase, thymidylate kinase; ATP-binding, nucl	97.26
3a4m_A	260	L-seryl-tRNA(SEC) kinase; P-loop motif, walker A m	97.26
3cr8_A	552	Sulfate adenylyltranferase, adenylylsulfate kinase	97.26
1jr3_D	343	DNA polymerase III, delta subunit; processivity, p	97.26
1zd8_A	227	GTP:AMP phosphotransferase mitochondrial; ATP:AMP	97.26
1zak_A	222	Adenylate kinase; ATP:AMP-phosphotransferase, tran	97.26
3ice_A	422	Transcription termination factor RHO; transcriptio	97.26
1sky_E	473	F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alp	97.24
2f1r_A	171	Molybdopterin-guanine dinucleotide biosynthesis pr	97.24
3kta_A	182	Chromosome segregation protein SMC; structural mai	97.21
2xxa_A	433	Signal recognition particle protein; protein trans	97.21
3nwj_A	250	ATSK2; P loop, shikimate, nucleoside monophosphate	97.2
3pih_A	916	Uvrabc system protein A; hydrolase, ABC ATPase, DN	97.2
1u94_A	356	RECA protein, recombinase A; homologous recombinat	97.2
1gtv_A	214	TMK, thymidylate kinase; transferase, transferase	97.19
2grj_A	192	Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosp	97.17
1np6_A	174	Molybdopterin-guanine dinucleotide biosynthesis pr	97.17
1vht_A	218	Dephospho-COA kinase; structural genomics, transfe	97.16
2gza_A	361	Type IV secretion system protein VIRB11; ATPase, h	97.16
3exa_A	322	TRNA delta(2)-isopentenylpyrophosphate transferase	97.16
3ake_A	208	Cytidylate kinase; CMP kinase, CMP complex, open c	97.15
3r20_A	233	Cytidylate kinase; structural genomics, seattle st	97.15
2vp4_A	230	Deoxynucleoside kinase; ATP-binding, DNA synthesis	97.15
1oix_A	191	RAS-related protein RAB-11A; small G protein, intr	97.14
2obl_A	347	ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O	97.14
1lw7_A	365	Transcriptional regulator NADR; NMN, NMN adenylyl	97.13
1e4v_A	214	Adenylate kinase; transferase(phosphotransferase);	97.13
3a8t_A	339	Adenylate isopentenyltransferase; rossmann fold pr	97.12
3be4_A	217	Adenylate kinase; malaria, cryptosporidium parvum	97.12
2wsm_A	221	Hydrogenase expression/formation protein (HYPB); m	97.12
1g8f_A	511	Sulfate adenylyltransferase; alpha-beta protein, b	97.11
2hf9_A	226	Probable hydrogenase nickel incorporation protein	97.11
3foz_A	316	TRNA delta(2)-isopentenylpyrophosphate transferas;	97.1
4eaq_A	229	DTMP kinase, thymidylate kinase; structural genomi	97.1
3crm_A	323	TRNA delta(2)-isopentenylpyrophosphate transferase	97.09
2orw_A	184	Thymidine kinase; TMTK, TP4A, transferase; HET: 4T	97.09
2xb4_A	223	Adenylate kinase; ATP-binding, nucleotide-binding,	97.09
2p67_A	341	LAO/AO transport system kinase; ARGK, structural G	97.08
2qmh_A	205	HPR kinase/phosphorylase; V267F mutation, ATP-bind	97.08
1a7j_A	290	Phosphoribulokinase; transferase, calvin cycle; 2.	97.08
1f2t_A	149	RAD50 ABC-ATPase; DNA double-strand break repair,	97.08
2f9l_A	199	RAB11B, member RAS oncogene family; RAB11B GTPase,	97.08
3d3q_A	340	TRNA delta(2)-isopentenylpyrophosphate transferase	97.07
1nij_A	318	Hypothetical protein YJIA; structural genomics, P-	97.06
1ak2_A	233	Adenylate kinase isoenzyme-2; nucleoside monophosp	97.06
2yv5_A	302	YJEQ protein; hydrolase, GTPase, permutation, stru	97.05
2f6r_A	281	COA synthase, bifunctional coenzyme A synthase; 18	97.03
2ffh_A	425	Protein (FFH); SRP54, signal recognition particle,	97.03
1q3t_A	236	Cytidylate kinase; nucleotide monophosphate kinase	97.01
2dpy_A	438	FLII, flagellum-specific ATP synthase; beta barrel	97.01
2npi_A	460	Protein CLP1; CLP1-PCF11 complex, ATP binding, ter	97.0
3hjn_A	197	DTMP kinase, thymidylate kinase; ATP-binding, nucl	96.98
3euj_A	483	Chromosome partition protein MUKB, linker; MUKB, M	96.93
1ltq_A	301	Polynucleotide kinase; phosphatase, alpha/beta, P-	96.93
2wji_A	165	Ferrous iron transport protein B homolog; membrane	96.92
3upu_A	459	ATP-dependent DNA helicase DDA; RECA-like domain,	96.92
2www_A	349	Methylmalonic aciduria type A protein, mitochondri	96.91
3bgw_A	444	DNAB-like replicative helicase; ATPase, replicatio	96.91
2ged_A	193	SR-beta, signal recognition particle receptor beta	96.91
3zvl_A	416	Bifunctional polynucleotide phosphatase/kinase; hy	96.9
2qag_B	427	Septin-6, protein NEDD5; cell cycle, cell division	96.89
3tqf_A	181	HPR(Ser) kinase; transferase, hydrolase; 2.80A {Co	96.87
2oap_1	511	GSPE-2, type II secretion system protein; hexameri	96.86
1u0l_A	301	Probable GTPase ENGC; permutation, OB-fold, zinc-f	96.85
2gj8_A	172	MNME, tRNA modification GTPase TRME; G-domain dime	96.85
2zej_A	184	Dardarin, leucine-rich repeat kinase 2; parkinson'	96.84
2zts_A	251	Putative uncharacterized protein PH0186; KAIC like	96.83
2wjg_A	188	FEOB, ferrous iron transport protein B homolog; me	96.83
2dyk_A	161	GTP-binding protein; GTPase, ribosome-binding prot	96.82
1pui_A	210	ENGB, probable GTP-binding protein ENGB; structura	96.81
3eph_A	409	TRNA isopentenyltransferase; transferase, alternat	96.81
2iut_A	574	DNA translocase FTSK; nucleotide-binding, chromoso	96.8
4edh_A	213	DTMP kinase, thymidylate kinase; structural genomi	96.8
1w4r_A	195	Thymidine kinase; type II, human, cytosolic, phosp	96.76
2j9r_A	214	Thymidine kinase; TK1, DNK, lasso, transferase, AT	96.74
2rcn_A	358	Probable GTPase ENGC; YJEQ, circularly permuted, G	96.74
2ocp_A	241	DGK, deoxyguanosine kinase; protein-nucleotide com	96.73
2r6a_A	454	DNAB helicase, replicative helicase; replication,	96.73
2ce2_X	166	GTPase HRAS; signaling protein, guanine nucleotide	96.73
1yrb_A	262	ATP(GTP)binding protein; GTPase, P-loop, rossman f	96.72
3f9v_A	595	Minichromosome maintenance protein MCM; replicativ	96.72
2gks_A	546	Bifunctional SAT/APS kinase; transferase, sulfuryl	96.71
1z2a_A	168	RAS-related protein RAB-23; RAB GTPase, vesicular	96.71
2r8r_A	228	Sensor protein; KDPD, PFAM02702, MCSG, structural	96.71
3qks_A	203	DNA double-strand break repair RAD50 ATPase; RECA-	96.71
1h65_A	270	Chloroplast outer envelope protein OEP34; GTPase,	96.68
3cmw_A	1706	Protein RECA, recombinase A; homologous recombinat	96.68
3qf7_A	365	RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.	96.67
1fzq_A	181	ADP-ribosylation factor-like protein 3; protein-GD	96.67
2nzj_A	175	GTP-binding protein REM 1; GDP/GTP binding, GTP hy	96.66
3def_A	262	T7I23.11 protein; chloroplast, TOC33, GTPase, hydr	96.64
2fn4_A	181	P23, RAS-related protein R-RAS; GDP/GTP binding, G	96.64
3cmu_A	2050	Protein RECA, recombinase A; homologous recombinat	96.64
2qnr_A	301	Septin-2, protein NEDD5; structural genomics conso	96.63
2lkc_A	178	Translation initiation factor IF-2; NMR {Geobacill	96.62
4gzl_A	204	RAS-related C3 botulinum toxin substrate 1; rossma	96.62
1kao_A	167	RAP2A; GTP-binding protein, small G protein, GDP,	96.62
1u8z_A	168	RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNH	96.61
3lv8_A	236	DTMP kinase, thymidylate kinase; structural genomi	96.61
1z08_A	170	RAS-related protein RAB-21; RAB GTPase, vesicular	96.6
1m8p_A	573	Sulfate adenylyltransferase; rossmann fold, phosph	96.59
3qkt_A	339	DNA double-strand break repair RAD50 ATPase; RECA-	96.59
1ek0_A	170	Protein (GTP-binding protein YPT51); vesicular tra	96.59
2h92_A	219	Cytidylate kinase; rossmann fold, transferase; HET	96.59
1z0j_A	170	RAB-22, RAS-related protein RAB-22A; RAB GTPase, R	96.59
1nrj_B	218	SR-beta, signal recognition particle receptor beta	96.59
3fwy_A	314	Light-independent protochlorophyllide reductase I	96.58
2j37_W	504	Signal recognition particle 54 kDa protein (SRP54)	96.58
1g16_A	170	RAS-related protein SEC4; G protein RAB, signaling	96.58
1svi_A	195	GTP-binding protein YSXC; ENGB, GTPase, GDP, hydro	96.58
3ld9_A	223	DTMP kinase, thymidylate kinase; ssgcid, NIH, niai	96.57
1wms_A	177	RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, p	96.56
1ky3_A	182	GTP-binding protein YPT7P; vesicular traffic, GTP	96.56
2v3c_C	432	SRP54, signal recognition 54 kDa protein; nucleoti	96.56
1c1y_A	167	RAS-related protein RAP-1A; GTP-binding proteins,	96.56
3e1s_A	574	Exodeoxyribonuclease V, subunit RECD; alpha and be	96.55
2erx_A	172	GTP-binding protein DI-RAS2; GTP hydrolysis, trans	96.55
1m7b_A	184	RND3/RHOE small GTP-binding protein; small GTPase,	96.53
1r8s_A	164	ADP-ribosylation factor 1; protein transport/excha	96.53
3pqc_A	195	Probable GTP-binding protein ENGB; rossmann fold,	96.53
3con_A	190	GTPase NRAS; structural genomics consortium, SGC,	96.52
4b3f_X	646	DNA-binding protein smubp-2; hydrolase, helicase;	96.52
1upt_A	171	ARL1, ADP-ribosylation factor-like protein 1; hydr	96.52
3q72_A	166	GTP-binding protein RAD; G-domain, CAV2 beta, sign	96.52
3ihw_A	184	Centg3; RAS, centaurin, GTPase, structural genomic	96.51
1m2o_B	190	GTP-binding protein SAR1, GTP binding protein; zin	96.5
4tmk_A	213	Protein (thymidylate kinase); ATP:DTMP phosphotran	96.5
1r2q_A	170	RAS-related protein RAB-5A; GTPase, GNP, atomic re	96.5
2orv_A	234	Thymidine kinase; TP4A (P1-(5'-adenosyl)P4-(5'- (2	96.5
2cxx_A	190	Probable GTP-binding protein ENGB; structural geno	96.49
3q85_A	169	GTP-binding protein REM 2; G-domain, CAV2 beta, si	96.49
2y8e_A	179	RAB-protein 6, GH09086P, RAB6; hydrolase, nucleoti	96.48
2o5v_A	359	DNA replication and repair protein RECF; ABC ATPas	96.46
1t9h_A	307	YLOQ, probable GTPase ENGC; N-terminal beta-barrel	96.46
3bc1_A	195	RAS-related protein RAB-27A; RAB27, GTPase, RAB, s	96.45
2bme_A	186	RAB4A, RAS-related protein RAB4A; GTP-binding prot	96.45
1z0f_A	179	RAB14, member RAS oncogene family; RAB GTPase, ves	96.44
2cjw_A	192	GTP-binding protein GEM; nucleotide-binding, small	96.44
3v9p_A	227	DTMP kinase, thymidylate kinase; ssgcid, STRU geno	96.44
3tmk_A	216	Thymidylate kinase; phosphotransferase; HET: T5A;	96.43
2oil_A	193	CATX-8, RAS-related protein RAB-25; G-protein, GDP	96.42
4hlc_A	205	DTMP kinase, thymidylate kinase; TMK, MRSA, pipiri	96.42
3lxx_A	239	GTPase IMAP family member 4; structural genomics c	96.41
2qag_C	418	Septin-7; cell cycle, cell division, GTP-binding,	96.4
2ck3_D	482	ATP synthase subunit beta\, mitochondrial; hydrola	96.4
3fdi_A	201	Uncharacterized protein; cytidylate kinase like pr	96.4
3clv_A	208	RAB5 protein, putative; malaria, GTPase, structura	96.39
2axn_A	520	6-phosphofructo-2-kinase/fructose-2,6- biphosphata	96.39
1p5z_B	263	DCK, deoxycytidine kinase; nucleoside kinase, P-lo	96.39
3gmt_A	230	Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucle	96.39
2hxs_A	178	RAB-26, RAS-related protein RAB-28; GTPase, signal	96.39
3kkq_A	183	RAS-related protein M-RAS; GTP-binding, GTPase, si	96.37
2efe_B	181	Small GTP-binding protein-like; GEF, GTPase, VPS9,	96.37
4dsu_A	189	GTPase KRAS, isoform 2B; small G-protein, signalin	96.37
1ega_A	301	Protein (GTP-binding protein ERA); GTPase, RNA-bin	96.37
2fg5_A	192	RAB-22B, RAS-related protein RAB-31; G-protein, GT	96.37
2a9k_A	187	RAS-related protein RAL-A; bacterial ADP-ribosyltr	96.36
1fx0_B	498	ATP synthase beta chain; latent ATPase, thermal st	96.36
1gwn_A	205	RHO-related GTP-binding protein RHOE; GTPase, inac	96.36
2g6b_A	180	RAS-related protein RAB-26; G-protein, GTP analogu	96.36
2iwr_A	178	Centaurin gamma 1; ANK repeat, zinc-finger, GTP-bi	96.36
3tw8_B	181	RAS-related protein RAB-35; longin domain, RAB GTP	96.35
1f6b_A	198	SAR1; gtpases, N-terminal helix, Mg-containing com	96.35
3t1o_A	198	Gliding protein MGLA; G domain containing protein,	96.34
1vg8_A	207	RAS-related protein RAB-7; GTP-binding protein, pr	96.34
3c5c_A	187	RAS-like protein 12; GDP, GTPase, structural genom	96.33
2bov_A	206	RAla, RAS-related protein RAL-A; C3BOT, exoenzyme,	96.33
3t5g_A	181	GTP-binding protein RHEB; immunoglobulin-like beta	96.33
2ew1_A	201	RAS-related protein RAB-30; G-protein, GTP analogu	96.33
1mh1_A	186	RAC1; GTP-binding, GTPase, small G-protein, RHO fa	96.33
2atv_A	196	RERG, RAS-like estrogen-regulated growth inhibitor	96.32
3dz8_A	191	RAS-related protein RAB-3B; GDP, GTPase, structura	96.32
1x6v_B	630	Bifunctional 3'-phosphoadenosine 5'- phosphosulfat	96.32
1c9k_A	180	COBU, adenosylcobinamide kinase; alpha/beta struct	96.32
3bwd_D	182	RAC-like GTP-binding protein ARAC6; G domain, cyto	96.32
1q57_A	503	DNA primase/helicase; dntpase, DNA replication, tr	96.32
1w1w_A	430	Structural maintenance of chromosome 1; cohesin, c	96.31
2gf9_A	189	RAS-related protein RAB-3D; G-protein, structural	96.31
1moz_A	183	ARL1, ADP-ribosylation factor-like protein 1; GTP-	96.3
1e69_A	322	Chromosome segregation SMC protein; structural mai	96.3
1zd9_A	188	ADP-ribosylation factor-like 10B; transport protei	96.29
2gf0_A	199	GTP-binding protein DI-RAS1; GDP/GTP binding, GTP	96.28
3oes_A	201	GTPase rhebl1; small GTPase, structural genomics,	96.27
1qhl_A	227	Protein (cell division protein MUKB); SMC, chromos	96.27
2a5j_A	191	RAS-related protein RAB-2B; GTPase, signal transdu	96.27
2bcg_Y	206	Protein YP2, GTP-binding protein YPT1; RABGTPase,	96.26
3reg_A	194	RHO-like small GTPase; cytoskeleton, nucleotide-bi	96.25
3tkl_A	196	RAS-related protein RAB-1A; vesicle trafficking, p	96.25
1zj6_A	187	ADP-ribosylation factor-like protein 5; ARL, GTP-b	96.24
1zbd_A	203	Rabphilin-3A; G protein, effector, RABCDR, synapti	96.23
2p5s_A	199	RAS and EF-hand domain containing; G-protein, RAB,	96.22
2fh5_B	214	SR-beta, signal recognition particle receptor beta	96.22
3cbq_A	195	GTP-binding protein REM 2; FLJ38964A, structural g	96.22
3end_A	307	Light-independent protochlorophyllide reductase ir	96.22
3k53_A	271	Ferrous iron transport protein B; GTPase fold, hel	96.22
1z06_A	189	RAS-related protein RAB-33B; RAB GTPase, RAB33B GT	96.21
1cp2_A	269	CP2, nitrogenase iron protein; oxidoreductase; 1.9	96.21
3auy_A	371	DNA double-strand break repair RAD50 ATPase; DNA r	96.21
1x3s_A	195	RAS-related protein RAB-18; GTPase, GNP, structura	96.2
2h17_A	181	ADP-ribosylation factor-like protein 5A; GDP, GTPa	96.2
4bas_A	199	ADP-ribosylation factor, putative (small GTPase, p	96.19
3hdt_A	223	Putative kinase; structura genomics, PSI-2, protei	96.19

>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*

Probab=99.94  E-value=9.8e-26  Score=191.98  Aligned_cols=177  Identities=17%  Similarity=0.155  Sum_probs=133.2

Q ss_pred             ccchhHHHHHHHHHhcC-CCCeeEEEEEecCCCcHHHHHHHHHH----HhcCCCCceEeeccccccccccCchHHHHHHH
Q 039455           29 VGIASRMEKMNGYLEAG-LDDVRFIGICGMGGIGKTTLAKVLYN----TLKDQFEASSFLANVREVSVTRGLVPLQEQLL  103 (216)
Q Consensus        29 vgR~~~~~~l~~~l~~~-~~~~~~i~I~G~~GiGKTtL~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  103 (216)
                      +||+.++++|.++|... ....++|+|+|++|+||||||+.+++    ++..+|+.+.|+. ++.... .+...+...++
T Consensus       131 ~GR~~~~~~l~~~L~~~~~~~~~vv~I~G~gGvGKTtLA~~v~~~~~~~~~~~F~~~~wv~-vs~~~~-~~~~~~~~~il  208 (549)
T 2a5y_B          131 YIREYHVDRVIKKLDEMCDLDSFFLFLHGRAGSGKSVIASQALSKSDQLIGINYDSIVWLK-DSGTAP-KSTFDLFTDIL  208 (549)
T ss_dssp             CCCHHHHHHHHHHHHHHTTSSSEEEEEECSTTSSHHHHHHHHHHHCSSTBTTTBSEEEEEE-CCCCST-THHHHHHHHHH
T ss_pred             CCchHHHHHHHHHHhcccCCCceEEEEEcCCCCCHHHHHHHHHHhhhHHHhccCCcEEEEE-ECCCCC-CCHHHHHHHHH
Confidence            49999999999998754 34579999999999999999999996    6788899999995 333211 34667777888


Q ss_pred             HHHHhhcc---c---cccchhhhHHHHHHHhCCc-eEEEEEeCCCCHHHHHHhhcCCCCCCCCcEEEEEeCCchhhhccC
Q 039455          104 SEVLMERN---L---IIWDVHKGINLIRWRLCRK-RVLVVLDDVDQLEQLQALAGNHDWFGFGSRIIITTRDEHVLKGHG  176 (216)
Q Consensus       104 ~~~~~~~~---~---~~~~~~~~~~~l~~~l~~~-~~llvlDd~~~~~~~~~l~~~~~~~~~~~~il~tsr~~~~~~~~~  176 (216)
                      ..+.....   .   ...+...+...+.+.+.++ ++||||||+|..+++ .+..     .+|++||+|||+..++....
T Consensus       209 ~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~L~~~kr~LlVLDdv~~~~~~-~~~~-----~~gs~ilvTTR~~~v~~~~~  282 (549)
T 2a5y_B          209 LMLKSEDDLLNFPSVEHVTSVVLKRMICNALIDRPNTLFVFDDVVQEETI-RWAQ-----ELRLRCLVTTRDVEISNAAS  282 (549)
T ss_dssp             HHHTTTSCCTTCCCCTTCCHHHHHHHHHHHHTTSTTEEEEEEEECCHHHH-HHHH-----HTTCEEEEEESBGGGGGGCC
T ss_pred             HHHhcCcccccccccccccHHHHHHHHHHHHcCCCcEEEEEECCCCchhh-cccc-----cCCCEEEEEcCCHHHHHHcC
Confidence            87765422   1   1112334578889999996 999999999998865 2221     26899999999998887764


Q ss_pred             -CcceEEecCCChHHHHHHHhhhhcCCCCCchhHhhhcc
Q 039455          177 -VTNIYKVRGLDYVEALQLFHLKVSKGKQPTDDRVELSK  214 (216)
Q Consensus       177 -~~~~~~l~~l~~~~~~~ll~~~~~~~~~~~~~~~~l~~  214 (216)
                       ....+++++|+.+++++||.+.++.... .+.+.++++
T Consensus       283 ~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~-~~~~~~~~~  320 (549)
T 2a5y_B          283 QTCEFIEVTSLEIDECYDFLEAYGMPMPV-GEKEEDVLN  320 (549)
T ss_dssp             SCEEEEECCCCCHHHHHHHHHHTSCCCC---CHHHHHHH
T ss_pred             CCCeEEECCCCCHHHHHHHHHHHhcCCCC-chhHHHHHH
Confidence             3467999999999999999999876542 244444443

>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*

Probab=99.88  E-value=7.5e-22  Score=181.39  Aligned_cols=186  Identities=23%  Similarity=0.284  Sum_probs=132.0

Q ss_pred             CCCCcccccccchhHHHHHHHHHhcCCCCeeEEEEEecCCCcHHHHHHHHHHH---hcCCCCc-eEeeccccccccccCc
Q 039455           20 TFPSAVDGLVGIASRMEKMNGYLEAGLDDVRFIGICGMGGIGKTTLAKVLYNT---LKDQFEA-SSFLANVREVSVTRGL   95 (216)
Q Consensus        20 ~~~~~~~~~vgR~~~~~~l~~~l~~~~~~~~~i~I~G~~GiGKTtL~~~~~~~---~~~~~~~-~~~~~~~~~~~~~~~~   95 (216)
                      ..|..+..|+||++++++|.++|.......++++|+|++|+||||||++++++   ...+|+. +.|+. .+... ....
T Consensus       118 ~~p~~~~~~vgR~~~~~~l~~~l~~~~~~~~~v~i~G~gG~GKTtLa~~~~~~~~~~~~~~~~~~~~v~-~~~~~-~~~~  195 (1249)
T 3sfz_A          118 GVPQRPVIFVTRKKLVHAIQQKLWKLNGEPGWVTIYGMAGCGKSVLAAEAVRDHSLLEGCFSGGVHWVS-IGKQD-KSGL  195 (1249)
T ss_dssp             TCCCCCSSCCCCHHHHHHHHHHHHTTTTSCEEEEEECSTTSSHHHHHHHHTCCHHHHTTTSTTCEEEEE-CCSCC-HHHH
T ss_pred             CCCCCCceeccHHHHHHHHHHHHhhccCCCCEEEEEeCCCCCHHHHHHHHhcChhHHHhhCCCeEEEEE-ECCcC-chHH
Confidence            45666778999999999999999755566789999999999999999999876   3445665 55765 33211 1122


Q ss_pred             hHHHHHHHHHHHhhcc---ccccchhhhHHHHHHHhCCc--eEEEEEeCCCCHHHHHHhhcCCCCCCCCcEEEEEeCCch
Q 039455           96 VPLQEQLLSEVLMERN---LIIWDVHKGINLIRWRLCRK--RVLVVLDDVDQLEQLQALAGNHDWFGFGSRIIITTRDEH  170 (216)
Q Consensus        96 ~~~~~~l~~~~~~~~~---~~~~~~~~~~~~l~~~l~~~--~~llvlDd~~~~~~~~~l~~~~~~~~~~~~il~tsr~~~  170 (216)
                      ......++..+.....   ....+.......+...+.++  ++||||||+|...++..+       .++++||+|||+..
T Consensus       196 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~LlvlDd~~~~~~~~~~-------~~~~~ilvTtR~~~  268 (1249)
T 3sfz_A          196 LMKLQNLCMRLDQEESFSQRLPLNIEEAKDRLRVLMLRKHPRSLLILDDVWDPWVLKAF-------DNQCQILLTTRDKS  268 (1249)
T ss_dssp             HHHHHHHHHHHTTTCTTCSSCCSSHHHHHHHHHHHTSSSSCSCEEEEESCCCHHHHTTT-------CSSCEEEEEESSTT
T ss_pred             HHHHHHHHHHhhhhcccccCCCCCHHHHHHHHHHHHhccCCCEEEEEecCCCHHHHHhh-------cCCCEEEEEcCCHH
Confidence            3334445555443321   11234566777888888877  999999999998766553       46899999999998


Q ss_pred             hhhc-cCCcceEEecC-CChHHHHHHHhhhhcCCC-CCchhHhhhcc
Q 039455          171 VLKG-HGVTNIYKVRG-LDYVEALQLFHLKVSKGK-QPTDDRVELSK  214 (216)
Q Consensus       171 ~~~~-~~~~~~~~l~~-l~~~~~~~ll~~~~~~~~-~~~~~~~~l~~  214 (216)
                      ++.. ......+.+++ |+.+++++||...++... ...+..++|++
T Consensus       269 ~~~~~~~~~~~~~~~~~l~~~~a~~l~~~~~~~~~~~~~~~~~~i~~  315 (1249)
T 3sfz_A          269 VTDSVMGPKHVVPVESGLGREKGLEILSLFVNMKKEDLPAEAHSIIK  315 (1249)
T ss_dssp             TTTTCCSCBCCEECCSSCCHHHHHHHHHHHHTSCSTTCCTHHHHHHH
T ss_pred             HHHhhcCCceEEEecCCCCHHHHHHHHHHhhCCChhhCcHHHHHHHH
Confidence            8744 34567899996 999999999998875433 22234444443

>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}

Probab=99.87  E-value=1.8e-21  Score=167.02  Aligned_cols=172  Identities=22%  Similarity=0.276  Sum_probs=119.3

Q ss_pred             CCCCcccccccchhHHHHHHHHHhcCCCCeeEEEEEecCCCcHHHHHHHHHHHh---cCCCC-ceEeeccccccccccCc
Q 039455           20 TFPSAVDGLVGIASRMEKMNGYLEAGLDDVRFIGICGMGGIGKTTLAKVLYNTL---KDQFE-ASSFLANVREVSVTRGL   95 (216)
Q Consensus        20 ~~~~~~~~~vgR~~~~~~l~~~l~~~~~~~~~i~I~G~~GiGKTtL~~~~~~~~---~~~~~-~~~~~~~~~~~~~~~~~   95 (216)
                      ..|+.+..||||+.+++.|.+++.......++++|+|++|+||||||..+++..   ..+|+ .+.|+. .+... ...+
T Consensus       118 ~~P~~~~~~vGR~~~l~~L~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~v~wv~-~~~~~-~~~~  195 (591)
T 1z6t_A          118 GVPQRPVVFVTRKKLVNAIQQKLSKLKGEPGWVTIHGMAGCGKSVLAAEAVRDHSLLEGCFPGGVHWVS-VGKQD-KSGL  195 (591)
T ss_dssp             TCCCCCSSCCCCHHHHHHHHHHHTTSTTSCEEEEEECCTTSSHHHHHHHHHCCHHHHHHHCTTCEEEEE-EESCC-HHHH
T ss_pred             CCCCCCCeecccHHHHHHHHHHHhcccCCCceEEEEcCCCCCHHHHHHHHHhchhHHHhhCCCceEEEE-CCCCc-hHHH
Confidence            446667889999999999999987544567899999999999999999998753   55675 578876 32211 1111


Q ss_pred             hHHHHHHHHHHHhhc---cccccchhhhHHHHHHHhCC--ceEEEEEeCCCCHHHHHHhhcCCCCCCCCcEEEEEeCCch
Q 039455           96 VPLQEQLLSEVLMER---NLIIWDVHKGINLIRWRLCR--KRVLVVLDDVDQLEQLQALAGNHDWFGFGSRIIITTRDEH  170 (216)
Q Consensus        96 ~~~~~~l~~~~~~~~---~~~~~~~~~~~~~l~~~l~~--~~~llvlDd~~~~~~~~~l~~~~~~~~~~~~il~tsr~~~  170 (216)
                      ......++..+....   .....+.......+...+.+  ++++|||||+|....+..+       .++++||+|||+..
T Consensus       196 ~~~l~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~LLVLDdv~~~~~l~~l-------~~~~~ilvTsR~~~  268 (591)
T 1z6t_A          196 LMKLQNLCTRLDQDESFSQRLPLNIEEAKDRLRILMLRKHPRSLLILDDVWDSWVLKAF-------DSQCQILLTTRDKS  268 (591)
T ss_dssp             HHHHHHHHHHHCSSCCSCSSCCCSHHHHHHHHHHHHHHTCTTCEEEEEEECCHHHHHTT-------CSSCEEEEEESCGG
T ss_pred             HHHHHHHHHHhccccccccCCCCCHHHHHHHHHHHHccCCCCeEEEEeCCCCHHHHHHh-------cCCCeEEEECCCcH
Confidence            112222222222111   11223445556667777765  6899999999997766543       46799999999988


Q ss_pred             hhhccCCcceEEe---cCCChHHHHHHHhhhhcC
Q 039455          171 VLKGHGVTNIYKV---RGLDYVEALQLFHLKVSK  201 (216)
Q Consensus       171 ~~~~~~~~~~~~l---~~l~~~~~~~ll~~~~~~  201 (216)
                      +..... ...+++   ++|+.+++++||...++.
T Consensus       269 ~~~~~~-~~~~~v~~l~~L~~~ea~~L~~~~~~~  301 (591)
T 1z6t_A          269 VTDSVM-GPKYVVPVESSLGKEKGLEILSLFVNM  301 (591)
T ss_dssp             GGTTCC-SCEEEEECCSSCCHHHHHHHHHHHHTS
T ss_pred             HHHhcC-CCceEeecCCCCCHHHHHHHHHHHhCC
Confidence            766542 344555   489999999999998865

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A*

Probab=99.85  E-value=7.1e-21  Score=168.28  Aligned_cols=162  Identities=19%  Similarity=0.114  Sum_probs=116.1

Q ss_pred             cccccchhHHHHHHHHHhcCCCCeeEEEEEecCCCcHHHHHHHHHH--HhcCCCCc-eEeeccccccccccCchHHHHHH
Q 039455           26 DGLVGIASRMEKMNGYLEAGLDDVRFIGICGMGGIGKTTLAKVLYN--TLKDQFEA-SSFLANVREVSVTRGLVPLQEQL  102 (216)
Q Consensus        26 ~~~vgR~~~~~~l~~~l~~~~~~~~~i~I~G~~GiGKTtL~~~~~~--~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l  102 (216)
                      +..+||+.+++.|.++|... +..++++|+||+|+||||||+.+++  ++..+|+. ++|+. ++.   ..+...+...+
T Consensus       128 k~~VGRe~eLeeL~elL~~~-d~~RVV~IvGmGGIGKTTLAk~Vy~d~rV~~~Fd~gV~WVs-Vs~---~~d~~~IL~~L  202 (1221)
T 1vt4_I          128 KYNVSRLQPYLKLRQALLEL-RPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLN-LKN---CNSPETVLEML  202 (1221)
T ss_dssp             CSCCCCHHHHHHHHHHHHHC-CSSCEEEECCSTTSSHHHHHHHHHHHCHHHHHHSSCEEEEE-CCC---SSSHHHHHHHH
T ss_pred             CCCCCcHHHHHHHHHHHhcc-CCCeEEEEEcCCCccHHHHHHHHHHhhHHHHhCCCcEEEEE-eCC---CCCHHHHHHHH
Confidence            34599999999999998753 2368999999999999999999996  46677886 78886 332   33444445555


Q ss_pred             HHHHHhhcc---c-------cccchhhhHHHHHHHh---CCceEEEEEeCCCCHHHHHHhhcCCCCCCCCcEEEEEeCCc
Q 039455          103 LSEVLMERN---L-------IIWDVHKGINLIRWRL---CRKRVLVVLDDVDQLEQLQALAGNHDWFGFGSRIIITTRDE  169 (216)
Q Consensus       103 ~~~~~~~~~---~-------~~~~~~~~~~~l~~~l---~~~~~llvlDd~~~~~~~~~l~~~~~~~~~~~~il~tsr~~  169 (216)
                      ...+.....   .       ...+.+.....+...+   .++++||||||+|..+.+..+.       ++++||+|||+.
T Consensus       203 l~lL~~i~~~~~~~~d~~~~ip~~leeL~e~Lr~lL~~l~~KRvLLVLDDVwd~eqLe~f~-------pGSRILVTTRd~  275 (1221)
T 1vt4_I          203 QKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFN-------LSCKILLTTRFK  275 (1221)
T ss_dssp             HHHHHHHCSSSTTTSCCCSSHHHHHHHHHHHHHHHHHHSTTSSCEEEEESCCCHHHHHHHH-------SSCCEEEECSCS
T ss_pred             HHHHhhcCcccccccccccCCCCCHHHHHHHHHHHHHhhcCCCEEEEEeCcChHHHHHhhC-------CCeEEEEeccCh
Confidence            443322110   0       0112334455566655   6789999999999988887753       579999999999


Q ss_pred             hhhhccCCcceEEec------CCChHHHHHHHhhhh
Q 039455          170 HVLKGHGVTNIYKVR------GLDYVEALQLFHLKV  199 (216)
Q Consensus       170 ~~~~~~~~~~~~~l~------~l~~~~~~~ll~~~~  199 (216)
                      .++........+.++      +|+.+|+++||.+..
T Consensus       276 ~Va~~l~g~~vy~LeL~d~dL~LS~eEA~eLF~~~~  311 (1221)
T 1vt4_I          276 QVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYL  311 (1221)
T ss_dssp             HHHHHHHHHSSCEEEECSSSSCCCHHHHHHHHHHHH
T ss_pred             HHHHhcCCCeEEEecCccccCCcCHHHHHHHHHHHc
Confidence            877543222345666      999999999999884

>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}

Probab=99.66  E-value=6.5e-16  Score=123.92  Aligned_cols=173  Identities=14%  Similarity=0.078  Sum_probs=105.0

Q ss_pred             CCCCCCcccccccchhHHHHHHHHHhcCCCCeeEEEEEecCCCcHHHHHHHHHHHhcCCCCceEeecccccc--ccccCc
Q 039455           18 NPTFPSAVDGLVGIASRMEKMNGYLEAGLDDVRFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLANVREV--SVTRGL   95 (216)
Q Consensus        18 ~~~~~~~~~~~vgR~~~~~~l~~~l~~~~~~~~~i~I~G~~GiGKTtL~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~   95 (216)
                      .+.++..+..|+||+.+++.|.+++..+    +.++|+|++|+|||+|++.+++...     ..|+.+....  ....+.
T Consensus         4 ~~~~~~~~~~~~gR~~el~~L~~~l~~~----~~v~i~G~~G~GKT~Ll~~~~~~~~-----~~~~~~~~~~~~~~~~~~   74 (350)
T 2qen_A            4 DLRPKTRREDIFDREEESRKLEESLENY----PLTLLLGIRRVGKSSLLRAFLNERP-----GILIDCRELYAERGHITR   74 (350)
T ss_dssp             CCSCCCSGGGSCSCHHHHHHHHHHHHHC----SEEEEECCTTSSHHHHHHHHHHHSS-----EEEEEHHHHHHTTTCBCH
T ss_pred             CCCCCCChHhcCChHHHHHHHHHHHhcC----CeEEEECCCcCCHHHHHHHHHHHcC-----cEEEEeecccccccCCCH
Confidence            4456667788999999999999988753    6999999999999999999998751     5565432211  001122


Q ss_pred             hHHHHHHHHHHHh---------------hccc--cccchhhhHHHHHHHhCC-ceEEEEEeCCCCHH--------HHHHh
Q 039455           96 VPLQEQLLSEVLM---------------ERNL--IIWDVHKGINLIRWRLCR-KRVLVVLDDVDQLE--------QLQAL  149 (216)
Q Consensus        96 ~~~~~~l~~~~~~---------------~~~~--~~~~~~~~~~~l~~~l~~-~~~llvlDd~~~~~--------~~~~l  149 (216)
                      ..+...+...+..               ....  ...+.......+...... ++.+|||||++...        .+..+
T Consensus        75 ~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~vlvlDe~~~~~~~~~~~~~~~~~~  154 (350)
T 2qen_A           75 EELIKELQSTISPFQKFQSKFKISLNLKFLTLEPRKLSLREVFRELNDLGEELGEFIVAFDEAQYLRFYGSRGGKELLAL  154 (350)
T ss_dssp             HHHHHHHHHHSCSHHHHHHHHTCCCCCGGGTSCGGGCCHHHHHHHHHHHHHHHSCEEEEEETGGGGGGBTTTTTHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhHhhhceeEEEecceeeccccchHHHHHHHHHHHHhccCCEEEEEeCHHHHhccCccchhhHHHH
Confidence            2333333332211               0000  012333344445444432 48999999997643        22222


Q ss_pred             hcCCCCCCCCcEEEEEeCCchhhhc----------c--CCcceEEecCCChHHHHHHHhhhh
Q 039455          150 AGNHDWFGFGSRIIITTRDEHVLKG----------H--GVTNIYKVRGLDYVEALQLFHLKV  199 (216)
Q Consensus       150 ~~~~~~~~~~~~il~tsr~~~~~~~----------~--~~~~~~~l~~l~~~~~~~ll~~~~  199 (216)
                      +..+....++..+|+|++.......          +  .....+++.||+.+++.+++....
T Consensus       155 L~~~~~~~~~~~~il~g~~~~~l~~~l~~~~~~~~l~~~~~~~i~l~pl~~~e~~~~l~~~~  216 (350)
T 2qen_A          155 FAYAYDSLPNLKIILTGSEVGLLHDFLKITDYESPLYGRIAGEVLVKPFDKDTSVEFLKRGF  216 (350)
T ss_dssp             HHHHHHHCTTEEEEEEESSHHHHHHHHCTTCTTSTTTTCCCEEEECCCCCHHHHHHHHHHHH
T ss_pred             HHHHHHhcCCeEEEEECCcHHHHHHHHhhcCCCCccccCccceeeCCCCCHHHHHHHHHHHH
Confidence            2211111246788999887543111          1  123589999999999999998754

>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}

Probab=99.66  E-value=4.8e-15  Score=120.54  Aligned_cols=167  Identities=13%  Similarity=0.063  Sum_probs=109.9

Q ss_pred             ccccccchhHHHHHHHHHhc--CCCCeeEEEEEecCCCcHHHHHHHHHHHhcCC--------CCceEeecccccccccc-
Q 039455           25 VDGLVGIASRMEKMNGYLEA--GLDDVRFIGICGMGGIGKTTLAKVLYNTLKDQ--------FEASSFLANVREVSVTR-   93 (216)
Q Consensus        25 ~~~~vgR~~~~~~l~~~l~~--~~~~~~~i~I~G~~GiGKTtL~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~-   93 (216)
                      +..|+||+.+++.+..++..  .......+.|+||+|+|||+|++.+++.+...        ....+|+.+..    .. 
T Consensus        19 p~~l~gr~~~~~~l~~~l~~~~~~~~~~~vll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~~~~~i~~~~----~~~   94 (384)
T 2qby_B           19 FKEIPFREDILRDAAIAIRYFVKNEVKFSNLFLGLTGTGKTFVSKYIFNEIEEVKKEDEEYKDVKQAYVNCRE----VGG   94 (384)
T ss_dssp             CSSCTTCHHHHHHHHHHHHHHHTTCCCCEEEEEECTTSSHHHHHHHHHHHHHHHHHHSSSSTTCEEEEEEHHH----HCS
T ss_pred             CCCCCChHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhhhcCCCCceEEEEECcc----CCC
Confidence            47899999999999988764  23445799999999999999999999876332        22344544221    22 


Q ss_pred             CchHHHHHHHHHHHhhccc-cccchhhhHHHHHHHhCCceEEEEEeCCCCHHH-------HHHhhcCCCCCCCCcEEEEE
Q 039455           94 GLVPLQEQLLSEVLMERNL-IIWDVHKGINLIRWRLCRKRVLVVLDDVDQLEQ-------LQALAGNHDWFGFGSRIIIT  165 (216)
Q Consensus        94 ~~~~~~~~l~~~~~~~~~~-~~~~~~~~~~~l~~~l~~~~~llvlDd~~~~~~-------~~~l~~~~~~~~~~~~il~t  165 (216)
                      ....+...++..+...... ...+.......+...+...+.+|+|||++....       +..+....    .+..+|+|
T Consensus        95 ~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~vlilDEi~~l~~~~~~~~~l~~l~~~~----~~~~iI~~  170 (384)
T 2qby_B           95 TPQAVLSSLAGKLTGFSVPKHGINLGEYIDKIKNGTRNIRAIIYLDEVDTLVKRRGGDIVLYQLLRSD----ANISVIMI  170 (384)
T ss_dssp             CHHHHHHHHHHHHHCSCCCSSSSCTHHHHHHHHHHHSSSCEEEEEETTHHHHHSTTSHHHHHHHHTSS----SCEEEEEE
T ss_pred             CHHHHHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHhccCCCEEEEECHHHhccCCCCceeHHHHhcCC----cceEEEEE
Confidence            4445556666665332111 112234456666677776655999999976532       33344332    56788889


Q ss_pred             eCCchhhhcc------CCcceEEecCCChHHHHHHHhhhh
Q 039455          166 TRDEHVLKGH------GVTNIYKVRGLDYVEALQLFHLKV  199 (216)
Q Consensus       166 sr~~~~~~~~------~~~~~~~l~~l~~~~~~~ll~~~~  199 (216)
                      |+...+...+      .....+.++|++.++..++|...+
T Consensus       171 t~~~~~~~~l~~~l~sr~~~~i~l~~l~~~~~~~il~~~~  210 (384)
T 2qby_B          171 SNDINVRDYMEPRVLSSLGPSVIFKPYDAEQLKFILSKYA  210 (384)
T ss_dssp             CSSTTTTTTSCHHHHHTCCCEEEECCCCHHHHHHHHHHHH
T ss_pred             ECCCchHhhhCHHHHhcCCCeEEECCCCHHHHHHHHHHHH
Confidence            8876432211      112489999999999999999864

>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*

Probab=99.65  E-value=7.3e-16  Score=126.45  Aligned_cols=172  Identities=15%  Similarity=0.108  Sum_probs=105.6

Q ss_pred             cccccccchhHHHHHHHHH-hcC--C--CCeeEEEE--EecCCCcHHHHHHHHHHHhcCC-----CC-ceEeeccccccc
Q 039455           24 AVDGLVGIASRMEKMNGYL-EAG--L--DDVRFIGI--CGMGGIGKTTLAKVLYNTLKDQ-----FE-ASSFLANVREVS   90 (216)
Q Consensus        24 ~~~~~vgR~~~~~~l~~~l-~~~--~--~~~~~i~I--~G~~GiGKTtL~~~~~~~~~~~-----~~-~~~~~~~~~~~~   90 (216)
                      .+..|+||+.+++.|..++ ...  +  .....++|  +|++|+|||+|++.+++.....     +. .+.|+.+..   
T Consensus        20 ~p~~l~gR~~el~~l~~~l~~~~~~~~~~~~~~~li~i~G~~G~GKT~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~---   96 (412)
T 1w5s_A           20 IPPELRVRRGEAEALARIYLNRLLSGAGLSDVNMIYGSIGRVGIGKTTLAKFTVKRVSEAAAKEGLTVKQAYVNAFN---   96 (412)
T ss_dssp             CCSSCSSSCHHHHHHHHHHHHHHHTSSCBCCEEEEEECTTCCSSSHHHHHHHHHHHHHHHHHHTTCCEEEEEEEGGG---
T ss_pred             CCCCCCChHHHHHHHHHHHhHHHhcCCCCCCCEEEEeCcCcCCCCHHHHHHHHHHHHHHHHhccCCceeEEEEECCC---
Confidence            4578999999999999988 521  2  24567888  9999999999999999876542     12 245554222   


Q ss_pred             cccCchHHHHHHHHHHHhhccccccchhhhHHHHHHHhC--CceEEEEEeCCCCH--------HHHHHhhcCCCCC---C
Q 039455           91 VTRGLVPLQEQLLSEVLMERNLIIWDVHKGINLIRWRLC--RKRVLVVLDDVDQL--------EQLQALAGNHDWF---G  157 (216)
Q Consensus        91 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~--~~~~llvlDd~~~~--------~~~~~l~~~~~~~---~  157 (216)
                       ......+...++..+....+....+.......+...+.  +++++|||||++..        +.+..+...+...   +
T Consensus        97 -~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~llvlDe~~~l~~~~~~~~~~l~~l~~~~~~~~~~~  175 (412)
T 1w5s_A           97 -APNLYTILSLIVRQTGYPIQVRGAPALDILKALVDNLYVENHYLLVILDEFQSMLSSPRIAAEDLYTLLRVHEEIPSRD  175 (412)
T ss_dssp             -CCSHHHHHHHHHHHHTCCCCCTTCCHHHHHHHHHHHHHHHTCEEEEEEESTHHHHSCTTSCHHHHHHHHTHHHHSCCTT
T ss_pred             -CCCHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHHhcCCeEEEEEeCHHHHhhccCcchHHHHHHHHHHHhcccCC
Confidence             23445566666666533211111223334445555553  57999999999754        2233332222111   1


Q ss_pred             --CCcEEEEEeCCchhhhcc---------CCcceEEecCCChHHHHHHHhhhh
Q 039455          158 --FGSRIIITTRDEHVLKGH---------GVTNIYKVRGLDYVEALQLFHLKV  199 (216)
Q Consensus       158 --~~~~il~tsr~~~~~~~~---------~~~~~~~l~~l~~~~~~~ll~~~~  199 (216)
                        .+..+|+||+...+...+         .....+.++||+.+++.++|...+
T Consensus       176 ~~~~v~lI~~~~~~~~~~~l~~~~~~~~~~~~~~i~l~~l~~~e~~~ll~~~~  228 (412)
T 1w5s_A          176 GVNRIGFLLVASDVRALSYMREKIPQVESQIGFKLHLPAYKSRELYTILEQRA  228 (412)
T ss_dssp             SCCBEEEEEEEEETHHHHHHHHHCHHHHTTCSEEEECCCCCHHHHHHHHHHHH
T ss_pred             CCceEEEEEEeccccHHHHHhhhcchhhhhcCCeeeeCCCCHHHHHHHHHHHH
Confidence              345577788765432111         112339999999999999997543

>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}

Probab=99.63  E-value=2.8e-15  Score=121.75  Aligned_cols=172  Identities=13%  Similarity=0.135  Sum_probs=107.9

Q ss_pred             cccccccchhHHHHHHHHHhcC--CCCeeEEEEEecCCCcHHHHHHHHHHHhcCC------CCceEeeccccccccccCc
Q 039455           24 AVDGLVGIASRMEKMNGYLEAG--LDDVRFIGICGMGGIGKTTLAKVLYNTLKDQ------FEASSFLANVREVSVTRGL   95 (216)
Q Consensus        24 ~~~~~vgR~~~~~~l~~~l~~~--~~~~~~i~I~G~~GiGKTtL~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~   95 (216)
                      .+..|+||+.+++.+..++...  ......+.|+||+|+|||+|++.+++.....      ....+|+.+..    ....
T Consensus        17 ~p~~~~gr~~~~~~l~~~l~~~~~~~~~~~vll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~----~~~~   92 (387)
T 2v1u_A           17 VPDVLPHREAELRRLAEVLAPALRGEKPSNALLYGLTGTGKTAVARLVLRRLEARASSLGVLVKPIYVNARH----RETP   92 (387)
T ss_dssp             CCSCCTTCHHHHHHHHHTTGGGTSSCCCCCEEECBCTTSSHHHHHHHHHHHHHHHHHHHTCCEEEEEEETTT----SCSH
T ss_pred             CCCCCCCHHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHHHHHHHhccCCCeEEEEEECCc----CCCH
Confidence            3478999999999999988543  3456789999999999999999999876432      12334444221    2344


Q ss_pred             hHHHHHHHHHHHhhccccccchhhhHHHHHHHhC--CceEEEEEeCCCCHHH-------HHHhhcCCCCC--CCCcEEEE
Q 039455           96 VPLQEQLLSEVLMERNLIIWDVHKGINLIRWRLC--RKRVLVVLDDVDQLEQ-------LQALAGNHDWF--GFGSRIII  164 (216)
Q Consensus        96 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~--~~~~llvlDd~~~~~~-------~~~l~~~~~~~--~~~~~il~  164 (216)
                      ..+...++..+....+....+.......+...+.  +++.+|+|||++....       +..+.......  ..+..+|+
T Consensus        93 ~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDEi~~l~~~~~~~~~l~~l~~~~~~~~~~~~~~~I~  172 (387)
T 2v1u_A           93 YRVASAIAEAVGVRVPFTGLSVGEVYERLVKRLSRLRGIYIIVLDEIDFLPKRPGGQDLLYRITRINQELGDRVWVSLVG  172 (387)
T ss_dssp             HHHHHHHHHHHSCCCCSSCCCHHHHHHHHHHHHTTSCSEEEEEEETTTHHHHSTTHHHHHHHHHHGGGCC-----CEEEE
T ss_pred             HHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHhccCCeEEEEEccHhhhcccCCCChHHHhHhhchhhcCCCceEEEEE
Confidence            4555666666533222222223444555555553  4589999999986532       22223222111  34567788


Q ss_pred             EeCCchhhhcc-----C-C-cceEEecCCChHHHHHHHhhhh
Q 039455          165 TTRDEHVLKGH-----G-V-TNIYKVRGLDYVEALQLFHLKV  199 (216)
Q Consensus       165 tsr~~~~~~~~-----~-~-~~~~~l~~l~~~~~~~ll~~~~  199 (216)
                      ||+...+...+     . . ...+.++|++.++..+++...+
T Consensus       173 ~t~~~~~~~~l~~~l~~r~~~~~i~l~~l~~~~~~~il~~~~  214 (387)
T 2v1u_A          173 ITNSLGFVENLEPRVKSSLGEVELVFPPYTAPQLRDILETRA  214 (387)
T ss_dssp             ECSCSTTSSSSCHHHHTTTTSEECCBCCCCHHHHHHHHHHHH
T ss_pred             EECCCchHhhhCHHHHhcCCCeEEeeCCCCHHHHHHHHHHHH
Confidence            88766332211     1 1 2579999999999999998764

>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}

Probab=99.62  E-value=1.4e-15  Score=123.48  Aligned_cols=173  Identities=16%  Similarity=0.136  Sum_probs=104.2

Q ss_pred             CcccccccchhHHHHHHHHHhcC--CCCeeEEEEEecCCCcHHHHHHHHHHHhcCCC---CceEeeccccccccccCchH
Q 039455           23 SAVDGLVGIASRMEKMNGYLEAG--LDDVRFIGICGMGGIGKTTLAKVLYNTLKDQF---EASSFLANVREVSVTRGLVP   97 (216)
Q Consensus        23 ~~~~~~vgR~~~~~~l~~~l~~~--~~~~~~i~I~G~~GiGKTtL~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~   97 (216)
                      ..+..|+||+.+++.+..++...  ......++|+|++|+|||||++.+++.+...+   ...+|+.+..    ......
T Consensus        17 ~~p~~~~gr~~e~~~l~~~l~~~~~~~~~~~vli~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~i~~~~----~~~~~~   92 (386)
T 2qby_A           17 YIPDELPHREDQIRKIASILAPLYREEKPNNIFIYGLTGTGKTAVVKFVLSKLHKKFLGKFKHVYINTRQ----IDTPYR   92 (386)
T ss_dssp             CCCSCCTTCHHHHHHHHHSSGGGGGTCCCCCEEEEECTTSSHHHHHHHHHHHHHHHTCSSCEEEEEEHHH----HCSHHH
T ss_pred             cCCCCCCChHHHHHHHHHHHHHHHcCCCCCeEEEECCCCCCHHHHHHHHHHHHHHHhcCCceEEEEECCC----CCCHHH
Confidence            34578999999999999988742  34567999999999999999999998765432   2344554221    122223


Q ss_pred             HHHHHHHHHHhhccccccchhhhHHHHHHHhC--CceEEEEEeCCCCH------HHHHHhhcCCCC-CCCCcEEEEEeCC
Q 039455           98 LQEQLLSEVLMERNLIIWDVHKGINLIRWRLC--RKRVLVVLDDVDQL------EQLQALAGNHDW-FGFGSRIIITTRD  168 (216)
Q Consensus        98 ~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~--~~~~llvlDd~~~~------~~~~~l~~~~~~-~~~~~~il~tsr~  168 (216)
                      ....++..+.........+.......+...+.  +++.+|+|||++..      +.+..+...+.. ...+..+|++|+.
T Consensus        93 ~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDE~~~l~~~~~~~~l~~l~~~~~~~~~~~~~~I~~~~~  172 (386)
T 2qby_A           93 VLADLLESLDVKVPFTGLSIAELYRRLVKAVRDYGSQVVIVLDEIDAFVKKYNDDILYKLSRINSEVNKSKISFIGITND  172 (386)
T ss_dssp             HHHHHTTTTSCCCCSSSCCHHHHHHHHHHHHHTCCSCEEEEEETHHHHHHSSCSTHHHHHHHHHHSCCC--EEEEEEESC
T ss_pred             HHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHhccCCeEEEEEcChhhhhccCcCHHHHHHhhchhhcCCCeEEEEEEECC
Confidence            33333332211111111122333444444443  34899999999653      223333222210 1345677888887


Q ss_pred             chhhhccC-------CcceEEecCCChHHHHHHHhhhh
Q 039455          169 EHVLKGHG-------VTNIYKVRGLDYVEALQLFHLKV  199 (216)
Q Consensus       169 ~~~~~~~~-------~~~~~~l~~l~~~~~~~ll~~~~  199 (216)
                      ..+...+.       ....+.++|++.++..+++...+
T Consensus       173 ~~~~~~~~~~~~~r~~~~~i~l~~l~~~~~~~il~~~~  210 (386)
T 2qby_A          173 VKFVDLLDPRVKSSLSEEEIIFPPYNAEELEDILTKRA  210 (386)
T ss_dssp             GGGGGGCTTHHHHTTTTEEEEECCCCHHHHHHHHHHHH
T ss_pred             CChHhhhCHHHhccCCCeeEEeCCCCHHHHHHHHHHHH
Confidence            65433221       12589999999999999998754

>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20

Probab=99.62  E-value=1e-14  Score=118.68  Aligned_cols=172  Identities=13%  Similarity=0.124  Sum_probs=108.4

Q ss_pred             cccccccchhHHHHHHHHHhcC--CCCee--EEEEEecCCCcHHHHHHHHHHHhcCCC-CceEeeccccccccccCchHH
Q 039455           24 AVDGLVGIASRMEKMNGYLEAG--LDDVR--FIGICGMGGIGKTTLAKVLYNTLKDQF-EASSFLANVREVSVTRGLVPL   98 (216)
Q Consensus        24 ~~~~~vgR~~~~~~l~~~l~~~--~~~~~--~i~I~G~~GiGKTtL~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~   98 (216)
                      .++.++||+.+++.+..++...  +..+.  .++|+|++|+|||||++.+++...... ..+.++.+..    ......+
T Consensus        15 ~p~~l~gr~~~~~~l~~~l~~~~~~~~~~~~~~li~G~~G~GKTtl~~~l~~~~~~~~~~~~~~i~~~~----~~~~~~~   90 (389)
T 1fnn_A           15 VPKRLPHREQQLQQLDILLGNWLRNPGHHYPRATLLGRPGTGKTVTLRKLWELYKDKTTARFVYINGFI----YRNFTAI   90 (389)
T ss_dssp             CCSCCTTCHHHHHHHHHHHHHHHHSTTSSCCEEEEECCTTSSHHHHHHHHHHHHTTSCCCEEEEEETTT----CCSHHHH
T ss_pred             CCCCCCChHHHHHHHHHHHHHHHcCCCCCCCeEEEECCCCCCHHHHHHHHHHHHhhhcCeeEEEEeCcc----CCCHHHH
Confidence            3477999999999999988742  22234  899999999999999999999876542 2344444221    2333445


Q ss_pred             HHHHHHHHHhhccccccchhhhHHHHHHHhC--CceEEEEEeCCCCH--HHHHHhhcCCCCC-C---CCcEEEEEeCCch
Q 039455           99 QEQLLSEVLMERNLIIWDVHKGINLIRWRLC--RKRVLVVLDDVDQL--EQLQALAGNHDWF-G---FGSRIIITTRDEH  170 (216)
Q Consensus        99 ~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~--~~~~llvlDd~~~~--~~~~~l~~~~~~~-~---~~~~il~tsr~~~  170 (216)
                      ...++..+....+....+.......+...+.  +++.+|+|||++..  +....+...+... .   .+..+|++|+...
T Consensus        91 ~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDE~~~l~~~~~~~L~~~~~~~~~~~~~~~~iI~~~~~~~  170 (389)
T 1fnn_A           91 IGEIARSLNIPFPRRGLSRDEFLALLVEHLRERDLYMFLVLDDAFNLAPDILSTFIRLGQEADKLGAFRIALVIVGHNDA  170 (389)
T ss_dssp             HHHHHHHTTCCCCSSCCCHHHHHHHHHHHHHHTTCCEEEEEETGGGSCHHHHHHHHHHTTCHHHHSSCCEEEEEEESSTH
T ss_pred             HHHHHHHhCccCCCCCCCHHHHHHHHHHHHhhcCCeEEEEEECccccchHHHHHHHHHHHhCCCCCcCCEEEEEEECCch
Confidence            5555554422211111223334444444443  56889999999764  3344443333211 1   3677888888775


Q ss_pred             hhhccC-------CcceEEecCCChHHHHHHHhhhh
Q 039455          171 VLKGHG-------VTNIYKVRGLDYVEALQLFHLKV  199 (216)
Q Consensus       171 ~~~~~~-------~~~~~~l~~l~~~~~~~ll~~~~  199 (216)
                      +...+.       ....+.++|++.++..+++...+
T Consensus       171 ~~~~l~~~~~~r~~~~~i~~~pl~~~~~~~~l~~~~  206 (389)
T 1fnn_A          171 VLNNLDPSTRGIMGKYVIRFSPYTKDQIFDILLDRA  206 (389)
T ss_dssp             HHHTSCHHHHHHHTTCEEECCCCBHHHHHHHHHHHH
T ss_pred             HHHHhCHHhhhcCCCceEEeCCCCHHHHHHHHHHHH
Confidence            433321       12379999999999999998765

>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20

Probab=99.61  E-value=4.7e-15  Score=119.14  Aligned_cols=172  Identities=15%  Similarity=0.127  Sum_probs=101.1

Q ss_pred             CCCCCCcccccccchhHHHHHHHHHhcCCCCeeEEEEEecCCCcHHHHHHHHHHHhcCCCCceEeeccccccc-cccCch
Q 039455           18 NPTFPSAVDGLVGIASRMEKMNGYLEAGLDDVRFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLANVREVS-VTRGLV   96 (216)
Q Consensus        18 ~~~~~~~~~~~vgR~~~~~~l~~~l~~~~~~~~~i~I~G~~GiGKTtL~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~   96 (216)
                      .+.++..+..|+||+.+++.|.+ +..     +.++|+|++|+|||+|++.+++.....   ..|+....... ...+..
T Consensus         5 ~~~~~~~~~~~~gR~~el~~L~~-l~~-----~~v~i~G~~G~GKT~L~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~   75 (357)
T 2fna_A            5 DTSPKDNRKDFFDREKEIEKLKG-LRA-----PITLVLGLRRTGKSSIIKIGINELNLP---YIYLDLRKFEERNYISYK   75 (357)
T ss_dssp             CSSCCCSGGGSCCCHHHHHHHHH-TCS-----SEEEEEESTTSSHHHHHHHHHHHHTCC---EEEEEGGGGTTCSCCCHH
T ss_pred             CCCCCCCHHHhcChHHHHHHHHH-hcC-----CcEEEECCCCCCHHHHHHHHHHhcCCC---EEEEEchhhccccCCCHH
Confidence            34555677889999999999999 653     599999999999999999999876432   46665322100 001222


Q ss_pred             HHHHHHHHHHHh-------------hc---cc-----c-------ccchhhhHHHHHHHhCCceEEEEEeCCCCHHH---
Q 039455           97 PLQEQLLSEVLM-------------ER---NL-----I-------IWDVHKGINLIRWRLCRKRVLVVLDDVDQLEQ---  145 (216)
Q Consensus        97 ~~~~~l~~~~~~-------------~~---~~-----~-------~~~~~~~~~~l~~~l~~~~~llvlDd~~~~~~---  145 (216)
                      .....+...+..             ..   ..     .       ..........+..... ++.+|||||++..+.   
T Consensus        76 ~~~~~l~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~-~~~vlvlDe~~~~~~~~~  154 (357)
T 2fna_A           76 DFLLELQKEINKLVKRLPSLLKALKNIQGIVIMGNEIKFNWNRKDRLSFANLLESFEQASK-DNVIIVLDEAQELVKLRG  154 (357)
T ss_dssp             HHHHHHHHHHHHHHHHCTTHHHHTTTSTTEEECSSSEEEC-----CCCHHHHHHHHHHTCS-SCEEEEEETGGGGGGCTT
T ss_pred             HHHHHHHHHHHHHhhhhhHHHHHhcccceEEecceEEEeccCCcchhhHHHHHHHHHhcCC-CCeEEEEECHHHhhccCc
Confidence            333333332211             00   00     0       1122223333333222 489999999965421   


Q ss_pred             --HHHhhcCCCCCCCCcEEEEEeCCchhhhc----------c-C-CcceEEecCCChHHHHHHHhhhh
Q 039455          146 --LQALAGNHDWFGFGSRIIITTRDEHVLKG----------H-G-VTNIYKVRGLDYVEALQLFHLKV  199 (216)
Q Consensus       146 --~~~l~~~~~~~~~~~~il~tsr~~~~~~~----------~-~-~~~~~~l~~l~~~~~~~ll~~~~  199 (216)
                        +..++..+.....+..+|+|++.......          + + ....+++.||+.+++.+++....
T Consensus       155 ~~~~~~l~~~~~~~~~~~~i~~g~~~~~l~~~l~~~~~~~~l~~r~~~~i~l~~l~~~e~~~~l~~~~  222 (357)
T 2fna_A          155 VNLLPALAYAYDNLKRIKFIMSGSEMGLLYDYLRVEDPESPLFGRAFSTVELKPFSREEAIEFLRRGF  222 (357)
T ss_dssp             CCCHHHHHHHHHHCTTEEEEEEESSHHHHHHHTTTTCTTSTTTTCCCEEEEECCCCHHHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHcCCCeEEEEEcCchHHHHHHHhccCCCCccccCccceeecCCCCHHHHHHHHHHHH
Confidence              11111111111236789999987643211          1 1 23689999999999999998754

>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*

Probab=99.55  E-value=5.7e-14  Score=106.59  Aligned_cols=182  Identities=13%  Similarity=0.122  Sum_probs=101.1

Q ss_pred             CCcccccccchhHHHHHHHHHhcCCCCeeEEEEEecCCCcHHHHHHHHHHHhcCCCCceEeeccccccccccCchHHHHH
Q 039455           22 PSAVDGLVGIASRMEKMNGYLEAGLDDVRFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLANVREVSVTRGLVPLQEQ  101 (216)
Q Consensus        22 ~~~~~~~vgR~~~~~~l~~~l~~~~~~~~~i~I~G~~GiGKTtL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  101 (216)
                      |.....++||+..++.+..++.... ....++|+|++|+|||+|++.++..+........+.  ..       .......
T Consensus        19 p~~~~~~~g~~~~~~~l~~~l~~~~-~~~~~ll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~--~~-------~~~~~~~   88 (250)
T 1njg_A           19 PQTFADVVGQEHVLTALANGLSLGR-IHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATP--CG-------VCDNCRE   88 (250)
T ss_dssp             CCSGGGCCSCHHHHHHHHHHHHHTC-CCSEEEEECSTTSCHHHHHHHHHHHHHCTTCSCSSC--CS-------CSHHHHH
T ss_pred             CccHHHHhCcHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCC--Cc-------ccHHHHH
Confidence            3345679999999999999987642 235899999999999999999998765432111100  00       0000000


Q ss_pred             HHHHHHhh-cccccc--chhhhHHHHHHHh-----CCceEEEEEeCCCCH--HHHHHhhcCCCCCCCCcEEEEEeCCchh
Q 039455          102 LLSEVLME-RNLIIW--DVHKGINLIRWRL-----CRKRVLVVLDDVDQL--EQLQALAGNHDWFGFGSRIIITTRDEHV  171 (216)
Q Consensus       102 l~~~~~~~-~~~~~~--~~~~~~~~l~~~l-----~~~~~llvlDd~~~~--~~~~~l~~~~~~~~~~~~il~tsr~~~~  171 (216)
                      +....... ......  ........+...+     .+++.+|||||++..  +.+..+...+.....+..+|+||+....
T Consensus        89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlviDe~~~l~~~~~~~l~~~l~~~~~~~~~i~~t~~~~~  168 (250)
T 1njg_A           89 IEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQK  168 (250)
T ss_dssp             HHTTCCSSEEEEETTCGGGHHHHHHHHHSCCCSCSSSSSEEEEEETGGGSCHHHHHHHHHHHHSCCTTEEEEEEESCGGG
T ss_pred             HhccCCcceEEecCcccccHHHHHHHHHHhhhchhcCCceEEEEECcccccHHHHHHHHHHHhcCCCceEEEEEeCChHh
Confidence            00000000 000000  0001111222222     245789999999753  3444444333322456778888876532


Q ss_pred             h-hc-cCCcceEEecCCChHHHHHHHhhhhcCCC--CCchhHhhhc
Q 039455          172 L-KG-HGVTNIYKVRGLDYVEALQLFHLKVSKGK--QPTDDRVELS  213 (216)
Q Consensus       172 ~-~~-~~~~~~~~l~~l~~~~~~~ll~~~~~~~~--~~~~~~~~l~  213 (216)
                      . .. ......++++|++.++..+++...+...+  .+++.++.|+
T Consensus       169 ~~~~l~~r~~~i~l~~l~~~e~~~~l~~~~~~~~~~~~~~~~~~l~  214 (250)
T 1njg_A          169 LPVTILSRCLQFHLKALDVEQIRHQLEHILNEEHIAHEPRALQLLA  214 (250)
T ss_dssp             SCHHHHTTSEEEECCCCCHHHHHHHHHHHHHHTTCCBCHHHHHHHH
T ss_pred             CCHHHHHHhhhccCCCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHH
Confidence            1 11 12347899999999999999987764333  2333444443

>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}

Probab=99.52  E-value=2.1e-13  Score=102.18  Aligned_cols=158  Identities=18%  Similarity=0.263  Sum_probs=93.5

Q ss_pred             CCcccccccchhHHHHHHHHHhcCCCCeeEEEEEecCCCcHHHHHHHHHHHhcCCCCceEeec-cccccccccCchHHHH
Q 039455           22 PSAVDGLVGIASRMEKMNGYLEAGLDDVRFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLA-NVREVSVTRGLVPLQE  100 (216)
Q Consensus        22 ~~~~~~~vgR~~~~~~l~~~l~~~~~~~~~i~I~G~~GiGKTtL~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~  100 (216)
                      |.....++||+..++.+..++....  .+.+.|+|++|+|||++++.++..+........++. ....   .... ....
T Consensus        13 p~~~~~~~g~~~~~~~l~~~l~~~~--~~~~ll~G~~G~GKT~l~~~l~~~~~~~~~~~~~~~~~~~~---~~~~-~~~~   86 (226)
T 2chg_A           13 PRTLDEVVGQDEVIQRLKGYVERKN--IPHLLFSGPPGTGKTATAIALARDLFGENWRDNFIEMNASD---ERGI-DVVR   86 (226)
T ss_dssp             CSSGGGCCSCHHHHHHHHHHHHTTC--CCCEEEECSTTSSHHHHHHHHHHHHHGGGGGGGEEEEETTC---TTCH-HHHH
T ss_pred             CCCHHHHcCcHHHHHHHHHHHhCCC--CCeEEEECCCCCCHHHHHHHHHHHHhccccccceEEecccc---ccCh-HHHH
Confidence            3445679999999999999988642  234999999999999999999987643322222221 1111   1111 1111


Q ss_pred             HHHHHHHhhccccccchhhhHHHHHHHhCCceEEEEEeCCCCH--HHHHHhhcCCCCCCCCcEEEEEeCCchhh-hc-cC
Q 039455          101 QLLSEVLMERNLIIWDVHKGINLIRWRLCRKRVLVVLDDVDQL--EQLQALAGNHDWFGFGSRIIITTRDEHVL-KG-HG  176 (216)
Q Consensus       101 ~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~llvlDd~~~~--~~~~~l~~~~~~~~~~~~il~tsr~~~~~-~~-~~  176 (216)
                      ..+.......               .....++.+|+|||++..  +....+...+.....+..+|+||+..... .. ..
T Consensus        87 ~~~~~~~~~~---------------~~~~~~~~vliiDe~~~l~~~~~~~l~~~l~~~~~~~~~i~~~~~~~~~~~~l~~  151 (226)
T 2chg_A           87 HKIKEFARTA---------------PIGGAPFKIIFLDEADALTADAQAALRRTMEMYSKSCRFILSCNYVSRIIEPIQS  151 (226)
T ss_dssp             HHHHHHHTSC---------------CSTTCSCEEEEEETGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHHT
T ss_pred             HHHHHHhccc---------------CCCccCceEEEEeChhhcCHHHHHHHHHHHHhcCCCCeEEEEeCChhhcCHHHHH
Confidence            1111100000               011256789999999754  22333332222123567788888765321 11 12


Q ss_pred             CcceEEecCCChHHHHHHHhhhhc
Q 039455          177 VTNIYKVRGLDYVEALQLFHLKVS  200 (216)
Q Consensus       177 ~~~~~~l~~l~~~~~~~ll~~~~~  200 (216)
                      ....++++|++.++..+++...+.
T Consensus       152 r~~~i~~~~~~~~~~~~~l~~~~~  175 (226)
T 2chg_A          152 RCAVFRFKPVPKEAMKKRLLEICE  175 (226)
T ss_dssp             TSEEEECCCCCHHHHHHHHHHHHH
T ss_pred             hCceeecCCCCHHHHHHHHHHHHH
Confidence            335899999999999999987764

>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}

Probab=99.43  E-value=1.3e-12  Score=103.16  Aligned_cols=169  Identities=12%  Similarity=0.028  Sum_probs=100.8

Q ss_pred             cccccchhHHHHHHHHHhcC--CCCeeEEEEEecCCCcHHHHHHHHHHHhcCCC-----C--ceEeeccccccccccCch
Q 039455           26 DGLVGIASRMEKMNGYLEAG--LDDVRFIGICGMGGIGKTTLAKVLYNTLKDQF-----E--ASSFLANVREVSVTRGLV   96 (216)
Q Consensus        26 ~~~vgR~~~~~~l~~~l~~~--~~~~~~i~I~G~~GiGKTtL~~~~~~~~~~~~-----~--~~~~~~~~~~~~~~~~~~   96 (216)
                      ..+.||++|++.|...|...  ...++.+.|+|++|+|||++++.++..+....     +  ..+++.+..    ..+..
T Consensus        20 ~~L~~Re~E~~~i~~~L~~~i~~~~~~~lli~GpPGTGKT~~v~~v~~~L~~~~~~~~~~~~~~v~INc~~----~~t~~   95 (318)
T 3te6_A           20 ELLKSQVEDFTRIFLPIYDSLMSSQNKLFYITNADDSTKFQLVNDVMDELITSSARKELPIFDYIHIDALE----LAGMD   95 (318)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHTTCCCEEEEECCCSHHHHHHHHHHHHHHHHTTTTTSSCCEEEEEEETTC----CC--H
T ss_pred             cccCCHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHHHHHHhhhccCCceEEEEEeccc----cCCHH
Confidence            34899999999999887643  45678999999999999999999999875422     1  223333222    23445


Q ss_pred             HHHHHHHHHHHhhccccccchhhhHHHHHHH--hCCceEEEEEeCCCCH---HHHHHhhcCCCCCCCCcEEEEEeCCchh
Q 039455           97 PLQEQLLSEVLMERNLIIWDVHKGINLIRWR--LCRKRVLVVLDDVDQL---EQLQALAGNHDWFGFGSRIIITTRDEHV  171 (216)
Q Consensus        97 ~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~--l~~~~~llvlDd~~~~---~~~~~l~~~~~~~~~~~~il~tsr~~~~  171 (216)
                      .....++.++.+...........+...+...  -.+++++++||+++..   +.+..++...........+|.++...+.
T Consensus        96 ~~~~~I~~~L~g~~~~~~~~~~~L~~~f~~~~~~~~~~~ii~lDE~d~l~~q~~L~~l~~~~~~~~s~~~vI~i~n~~d~  175 (318)
T 3te6_A           96 ALYEKIWFAISKENLCGDISLEALNFYITNVPKAKKRKTLILIQNPENLLSEKILQYFEKWISSKNSKLSIICVGGHNVT  175 (318)
T ss_dssp             HHHHHHHHHHSCCC--CCCCHHHHHHHHHHSCGGGSCEEEEEEECCSSSCCTHHHHHHHHHHHCSSCCEEEEEECCSSCC
T ss_pred             HHHHHHHHHhcCCCCCchHHHHHHHHHHHHhhhccCCceEEEEecHHHhhcchHHHHHHhcccccCCcEEEEEEecCccc
Confidence            5666777776443211111222223333332  1356899999999865   2233332111001223345555554322


Q ss_pred             h---------hccCCcceEEecCCChHHHHHHHhhhh
Q 039455          172 L---------KGHGVTNIYKVRGLDYVEALQLFHLKV  199 (216)
Q Consensus       172 ~---------~~~~~~~~~~l~~l~~~~~~~ll~~~~  199 (216)
                      .         +++ ....+.++|++.+|..+++..++
T Consensus       176 ~~~~L~~~v~SR~-~~~~i~F~pYt~~el~~Il~~Rl  211 (318)
T 3te6_A          176 IREQINIMPSLKA-HFTEIKLNKVDKNELQQMIITRL  211 (318)
T ss_dssp             CHHHHHTCHHHHT-TEEEEECCCCCHHHHHHHHHHHH
T ss_pred             chhhcchhhhccC-CceEEEeCCCCHHHHHHHHHHHH
Confidence            1         122 12579999999999999998765

>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20

Probab=99.40  E-value=2.1e-12  Score=94.46  Aligned_cols=146  Identities=10%  Similarity=0.068  Sum_probs=84.9

Q ss_pred             cccccccchhHHHHHHHHHhcCCCCeeEEEEEecCCCcHHHHHHHHHHHhcCC-------CCceEeeccccccccccCch
Q 039455           24 AVDGLVGIASRMEKMNGYLEAGLDDVRFIGICGMGGIGKTTLAKVLYNTLKDQ-------FEASSFLANVREVSVTRGLV   96 (216)
Q Consensus        24 ~~~~~vgR~~~~~~l~~~l~~~~~~~~~i~I~G~~GiGKTtL~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~   96 (216)
                      ....++||+++++.+.+.+...  ....+.|+|++|+|||+|++.+++.+...       .....++. ...........
T Consensus        20 ~~~~~~g~~~~~~~l~~~l~~~--~~~~~ll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~   96 (195)
T 1jbk_A           20 KLDPVIGRDEEIRRTIQVLQRR--TKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPEGLKGRRVLALD-MGALVAGAKYR   96 (195)
T ss_dssp             CSCCCCSCHHHHHHHHHHHTSS--SSCEEEEECCTTSCHHHHHHHHHHHHHHTCSCGGGTTCEEEEEC-HHHHHTTTCSH
T ss_pred             cccccccchHHHHHHHHHHhcC--CCCceEEECCCCCCHHHHHHHHHHHHHhCCCchhhcCCcEEEee-HHHHhccCCcc
Confidence            3456999999999999988753  34678999999999999999999876431       11222322 11100000000


Q ss_pred             HHHHHHHHHHHhhccccccchhhhHHH-HHHHh-CCceEEEEEeCCCCHH-------------HHHHhhcCCCCCCCCcE
Q 039455           97 PLQEQLLSEVLMERNLIIWDVHKGINL-IRWRL-CRKRVLVVLDDVDQLE-------------QLQALAGNHDWFGFGSR  161 (216)
Q Consensus        97 ~~~~~l~~~~~~~~~~~~~~~~~~~~~-l~~~l-~~~~~llvlDd~~~~~-------------~~~~l~~~~~~~~~~~~  161 (216)
                      .                  ........ +.... .+++.+|+|||++...             .+..+..     ..+..
T Consensus        97 ~------------------~~~~~~~~~~~~~~~~~~~~vl~iDe~~~l~~~~~~~~~~~~~~~l~~~~~-----~~~~~  153 (195)
T 1jbk_A           97 G------------------EFEERLKGVLNDLAKQEGNVILFIDELHTMVGAGKADGAMDAGNMLKPALA-----RGELH  153 (195)
T ss_dssp             H------------------HHHHHHHHHHHHHHHSTTTEEEEEETGGGGTT------CCCCHHHHHHHHH-----TTSCC
T ss_pred             c------------------cHHHHHHHHHHHHhhcCCCeEEEEeCHHHHhccCcccchHHHHHHHHHhhc-----cCCeE
Confidence            0                  00111111 11111 3567899999997542             1222222     23456


Q ss_pred             EEEEeCCchhhh-------ccCCcceEEecCCChHHHHHHH
Q 039455          162 IIITTRDEHVLK-------GHGVTNIYKVRGLDYVEALQLF  195 (216)
Q Consensus       162 il~tsr~~~~~~-------~~~~~~~~~l~~l~~~~~~~ll  195 (216)
                      +|+||.......       .......+.+++++.++..+++
T Consensus       154 ~i~~~~~~~~~~~~~~~~~l~~r~~~i~~~~p~~~~~~~il  194 (195)
T 1jbk_A          154 CVGATTLDEYRQYIEKDAALERRFQKVFVAEPSVEDTIAIL  194 (195)
T ss_dssp             EEEEECHHHHHHHTTTCHHHHTTEEEEECCCCCHHHHHTTC
T ss_pred             EEEeCCHHHHHHHHhcCHHHHHHhceeecCCCCHHHHHHHh
Confidence            777776554211       1123347999999999988775

>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}

Probab=99.38  E-value=3.5e-12  Score=99.65  Aligned_cols=170  Identities=17%  Similarity=0.211  Sum_probs=98.9

Q ss_pred             CCCcccccccchhHHHHHHHHHhcC-----------CCCeeEEEEEecCCCcHHHHHHHHHHHhcCCCCceEeecccccc
Q 039455           21 FPSAVDGLVGIASRMEKMNGYLEAG-----------LDDVRFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLANVREV   89 (216)
Q Consensus        21 ~~~~~~~~vgR~~~~~~l~~~l~~~-----------~~~~~~i~I~G~~GiGKTtL~~~~~~~~~~~~~~~~~~~~~~~~   89 (216)
                      ++.....++|.+..++.|..++...           ......+.|+||+|+|||+|++.++..+...+   ..+. ....
T Consensus        12 ~~~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~G~~GtGKT~la~~la~~~~~~~---~~v~-~~~~   87 (285)
T 3h4m_A           12 PNVRYEDIGGLEKQMQEIREVVELPLKHPELFEKVGIEPPKGILLYGPPGTGKTLLAKAVATETNATF---IRVV-GSEL   87 (285)
T ss_dssp             CCCCGGGSCSCHHHHHHHHHHTHHHHHCHHHHHHHCCCCCSEEEEESSSSSSHHHHHHHHHHHTTCEE---EEEE-GGGG
T ss_pred             CCCCHHHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECCCCCcHHHHHHHHHHHhCCCE---EEEe-hHHH
Confidence            3445678999999999998876431           13456799999999999999999998764321   1111 1111


Q ss_pred             ccccCchHHHHHHHHHHHhhccccccchhhhHHHHHHHhCCceEEEEEeCCCCH----------------HHHHHhhcCC
Q 039455           90 SVTRGLVPLQEQLLSEVLMERNLIIWDVHKGINLIRWRLCRKRVLVVLDDVDQL----------------EQLQALAGNH  153 (216)
Q Consensus        90 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~llvlDd~~~~----------------~~~~~l~~~~  153 (216)
                        .........                 ......+.......+.+|+|||++..                ..+..++..+
T Consensus        88 --~~~~~~~~~-----------------~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~l~~ll~~~  148 (285)
T 3h4m_A           88 --VKKFIGEGA-----------------SLVKDIFKLAKEKAPSIIFIDEIDAIAAKRTDALTGGDREVQRTLMQLLAEM  148 (285)
T ss_dssp             --CCCSTTHHH-----------------HHHHHHHHHHHHTCSEEEEEETTHHHHBCCSSSCCGGGGHHHHHHHHHHHHH
T ss_pred             --HHhccchHH-----------------HHHHHHHHHHHHcCCeEEEEECHHHhcccCccccCCccHHHHHHHHHHHHHh
Confidence              001100000                 11112222333356789999999654                1222332221


Q ss_pred             C--CCCCCcEEEEEeCCchhhhc-----cCCcceEEecCCChHHHHHHHhhhhcCCC-CCchhHhhhc
Q 039455          154 D--WFGFGSRIIITTRDEHVLKG-----HGVTNIYKVRGLDYVEALQLFHLKVSKGK-QPTDDRVELS  213 (216)
Q Consensus       154 ~--~~~~~~~il~tsr~~~~~~~-----~~~~~~~~l~~l~~~~~~~ll~~~~~~~~-~~~~~~~~l~  213 (216)
                      .  ....+..+|.||..+.....     ......+.+++++.++..++++....... ..+..+.+|+
T Consensus       149 ~~~~~~~~~~vI~ttn~~~~l~~~l~~~~Rf~~~i~~~~p~~~~r~~il~~~~~~~~~~~~~~~~~l~  216 (285)
T 3h4m_A          149 DGFDARGDVKIIGATNRPDILDPAILRPGRFDRIIEVPAPDEKGRLEILKIHTRKMNLAEDVNLEEIA  216 (285)
T ss_dssp             HTTCSSSSEEEEEECSCGGGBCHHHHSTTSEEEEEECCCCCHHHHHHHHHHHHTTSCBCTTCCHHHHH
T ss_pred             hCCCCCCCEEEEEeCCCchhcCHHHcCCCcCCeEEEECCCCHHHHHHHHHHHHhcCCCCCcCCHHHHH
Confidence            1  11235667778876543221     12345799999999999999998775544 2223444444

>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=99.34  E-value=4.5e-12  Score=100.46  Aligned_cols=157  Identities=20%  Similarity=0.314  Sum_probs=93.4

Q ss_pred             CCcccccccchhHHHHHHHHHhcCCCCeeEEEEEecCCCcHHHHHHHHHHHhcCCCC--ceEeeccccccccccCchHHH
Q 039455           22 PSAVDGLVGIASRMEKMNGYLEAGLDDVRFIGICGMGGIGKTTLAKVLYNTLKDQFE--ASSFLANVREVSVTRGLVPLQ   99 (216)
Q Consensus        22 ~~~~~~~vgR~~~~~~l~~~l~~~~~~~~~i~I~G~~GiGKTtL~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~   99 (216)
                      |.....++||+..++.+..++..+.  .+.+.|+||+|+|||++++.++..+.....  ...++.. ..   ... ....
T Consensus        17 p~~~~~~~g~~~~~~~l~~~l~~~~--~~~~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~-~~---~~~-~~~i   89 (323)
T 1sxj_B           17 PQVLSDIVGNKETIDRLQQIAKDGN--MPHMIISGMPGIGKTTSVHCLAHELLGRSYADGVLELNA-SD---DRG-IDVV   89 (323)
T ss_dssp             CSSGGGCCSCTHHHHHHHHHHHSCC--CCCEEEECSTTSSHHHHHHHHHHHHHGGGHHHHEEEECT-TS---CCS-HHHH
T ss_pred             CCCHHHHHCCHHHHHHHHHHHHcCC--CCeEEEECcCCCCHHHHHHHHHHHhcCCcccCCEEEecC-cc---ccC-hHHH
Confidence            3445679999999999999987642  234999999999999999999987643211  1222221 11   111 1111


Q ss_pred             HHHHHHHHhhccccccchhhhHHHHHHHh-CCceEEEEEeCCCCH--HHHHHhhcCCCCCCCCcEEEEEeCCchh-hhc-
Q 039455          100 EQLLSEVLMERNLIIWDVHKGINLIRWRL-CRKRVLVVLDDVDQL--EQLQALAGNHDWFGFGSRIIITTRDEHV-LKG-  174 (216)
Q Consensus       100 ~~l~~~~~~~~~~~~~~~~~~~~~l~~~l-~~~~~llvlDd~~~~--~~~~~l~~~~~~~~~~~~il~tsr~~~~-~~~-  174 (216)
                      ..++..+....               ..+ .+++.++||||++..  +....+...+.....++.+|++|+...- ... 
T Consensus        90 ~~~~~~~~~~~---------------~~~~~~~~~viiiDe~~~l~~~~~~~L~~~le~~~~~~~~il~~~~~~~l~~~l  154 (323)
T 1sxj_B           90 RNQIKHFAQKK---------------LHLPPGKHKIVILDEADSMTAGAQQALRRTMELYSNSTRFAFACNQSNKIIEPL  154 (323)
T ss_dssp             HTHHHHHHHBC---------------CCCCTTCCEEEEEESGGGSCHHHHHTTHHHHHHTTTTEEEEEEESCGGGSCHHH
T ss_pred             HHHHHHHHhcc---------------ccCCCCCceEEEEECcccCCHHHHHHHHHHHhccCCCceEEEEeCChhhchhHH
Confidence            11111111000               012 345789999999754  2333333222212356778888876432 111 


Q ss_pred             cCCcceEEecCCChHHHHHHHhhhhc
Q 039455          175 HGVTNIYKVRGLDYVEALQLFHLKVS  200 (216)
Q Consensus       175 ~~~~~~~~l~~l~~~~~~~ll~~~~~  200 (216)
                      ......++++|++.++..+++...+.
T Consensus       155 ~sr~~~i~~~~~~~~~~~~~l~~~~~  180 (323)
T 1sxj_B          155 QSQCAILRYSKLSDEDVLKRLLQIIK  180 (323)
T ss_dssp             HTTSEEEECCCCCHHHHHHHHHHHHH
T ss_pred             HhhceEEeecCCCHHHHHHHHHHHHH
Confidence            12345899999999999999987653

>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20

Probab=99.30  E-value=8.5e-12  Score=99.04  Aligned_cols=168  Identities=18%  Similarity=0.242  Sum_probs=96.4

Q ss_pred             CcccccccchhHHHHHHHHHhcCCCCeeEEEEEecCCCcHHHHHHHHHHHhcCCCCc--eEeeccccccccccCchHHHH
Q 039455           23 SAVDGLVGIASRMEKMNGYLEAGLDDVRFIGICGMGGIGKTTLAKVLYNTLKDQFEA--SSFLANVREVSVTRGLVPLQE  100 (216)
Q Consensus        23 ~~~~~~vgR~~~~~~l~~~l~~~~~~~~~i~I~G~~GiGKTtL~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~  100 (216)
                      ..-.+++|++..++.+..++..+  ..+.+.|+||+|+|||++++.++..+......  ...+. ...   .... ....
T Consensus        22 ~~~~~~~g~~~~~~~l~~~l~~~--~~~~~ll~G~~G~GKT~la~~l~~~l~~~~~~~~~~~~~-~~~---~~~~-~~~~   94 (327)
T 1iqp_A           22 QRLDDIVGQEHIVKRLKHYVKTG--SMPHLLFAGPPGVGKTTAALALARELFGENWRHNFLELN-ASD---ERGI-NVIR   94 (327)
T ss_dssp             CSTTTCCSCHHHHHHHHHHHHHT--CCCEEEEESCTTSSHHHHHHHHHHHHHGGGHHHHEEEEE-TTC---HHHH-HTTH
T ss_pred             CCHHHhhCCHHHHHHHHHHHHcC--CCCeEEEECcCCCCHHHHHHHHHHHhcCCcccCceEEee-ccc---cCch-HHHH
Confidence            34567999999999999988864  23459999999999999999999876432111  12221 111   0000 0000


Q ss_pred             HHHHHHHhhccccccchhhhHHHHHHHhCCceEEEEEeCCCCH--HHHHHhhcCCCCCCCCcEEEEEeCCchh-hhcc-C
Q 039455          101 QLLSEVLMERNLIIWDVHKGINLIRWRLCRKRVLVVLDDVDQL--EQLQALAGNHDWFGFGSRIIITTRDEHV-LKGH-G  176 (216)
Q Consensus       101 ~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~llvlDd~~~~--~~~~~l~~~~~~~~~~~~il~tsr~~~~-~~~~-~  176 (216)
                      ..+..+...               .....+++.++++||++..  +....+...+.....++.+|+||....- ...+ .
T Consensus        95 ~~~~~~~~~---------------~~~~~~~~~vliiDe~~~l~~~~~~~L~~~le~~~~~~~~i~~~~~~~~l~~~l~s  159 (327)
T 1iqp_A           95 EKVKEFART---------------KPIGGASFKIIFLDEADALTQDAQQALRRTMEMFSSNVRFILSCNYSSKIIEPIQS  159 (327)
T ss_dssp             HHHHHHHHS---------------CCGGGCSCEEEEEETGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHHH
T ss_pred             HHHHHHHhh---------------CCcCCCCCeEEEEeCCCcCCHHHHHHHHHHHHhcCCCCeEEEEeCCccccCHHHHh
Confidence            000000000               0011246789999999754  3333333322222346778888876532 1111 1


Q ss_pred             CcceEEecCCChHHHHHHHhhhhcCCC--CCchhHhhh
Q 039455          177 VTNIYKVRGLDYVEALQLFHLKVSKGK--QPTDDRVEL  212 (216)
Q Consensus       177 ~~~~~~l~~l~~~~~~~ll~~~~~~~~--~~~~~~~~l  212 (216)
                      ....++++|++.++..+++...+...+  .+++.++.|
T Consensus       160 r~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~~~~~~~l  197 (327)
T 1iqp_A          160 RCAIFRFRPLRDEDIAKRLRYIAENEGLELTEEGLQAI  197 (327)
T ss_dssp             TEEEEECCCCCHHHHHHHHHHHHHTTTCEECHHHHHHH
T ss_pred             hCcEEEecCCCHHHHHHHHHHHHHhcCCCCCHHHHHHH
Confidence            235899999999999999987764433  233444444

>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A

Probab=99.28  E-value=4.3e-11  Score=94.64  Aligned_cols=167  Identities=16%  Similarity=0.213  Sum_probs=100.0

Q ss_pred             CCcccccccchhHHHHHHHHHhcCCCCeeEEEEEecCCCcHHHHHHHHHHHhcCCC-C-ceEeeccccccccccCchHHH
Q 039455           22 PSAVDGLVGIASRMEKMNGYLEAGLDDVRFIGICGMGGIGKTTLAKVLYNTLKDQF-E-ASSFLANVREVSVTRGLVPLQ   99 (216)
Q Consensus        22 ~~~~~~~vgR~~~~~~l~~~l~~~~~~~~~i~I~G~~GiGKTtL~~~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~   99 (216)
                      |....+++|++..++.+..++..+  ..+.+.++||+|+|||++++.++..+.... . ....+. ............. 
T Consensus        13 p~~~~~~~g~~~~~~~l~~~l~~~--~~~~~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~-~~~~~~~~~~~~~-   88 (319)
T 2chq_A           13 PRTLDEVVGQDEVIQRLKGYVERK--NIPHLLFSGPPGTGKTATAIALARDLFGENWRDNFIEMN-ASDERGIDVVRHK-   88 (319)
T ss_dssp             CSSGGGSCSCHHHHHHHHTTTTTT--CCCCEEEESSSSSSHHHHHHHHHHHHHTTCHHHHCEEEE-TTSTTCTTTSSHH-
T ss_pred             CCCHHHHhCCHHHHHHHHHHHhCC--CCCeEEEECcCCcCHHHHHHHHHHHhcCCcccCCeEEEe-CccccChHHHHHH-
Confidence            445577999999999999988754  223499999999999999999998763221 1 111121 1110000011111 


Q ss_pred             HHHHHHHHhhccccccchhhhHHHHHH--Hh-CCceEEEEEeCCCCH--HHHHHhhcCCCCCCCCcEEEEEeCCch-hhh
Q 039455          100 EQLLSEVLMERNLIIWDVHKGINLIRW--RL-CRKRVLVVLDDVDQL--EQLQALAGNHDWFGFGSRIIITTRDEH-VLK  173 (216)
Q Consensus       100 ~~l~~~~~~~~~~~~~~~~~~~~~l~~--~l-~~~~~llvlDd~~~~--~~~~~l~~~~~~~~~~~~il~tsr~~~-~~~  173 (216)
                                           ...+..  .+ .+++.+++|||++..  +....+...+.....++.+|++|.... +..
T Consensus        89 ---------------------~~~~~~~~~~~~~~~~vliiDe~~~l~~~~~~~L~~~le~~~~~~~~i~~~~~~~~l~~  147 (319)
T 2chq_A           89 ---------------------IKEFARTAPIGGAPFKIIFLDEADALTADAQAALRRTMEMYSKSCRFILSCNYVSRIIE  147 (319)
T ss_dssp             ---------------------HHHHHHSCCSSSCCCEEEEEETGGGSCHHHHHTTGGGTSSSSSSEEEEEEESCGGGSCH
T ss_pred             ---------------------HHHHHhcCCCCCCCceEEEEeCCCcCCHHHHHHHHHHHHhcCCCCeEEEEeCChhhcch
Confidence                                 111110  11 245789999999754  334555554443345677787776543 211


Q ss_pred             c-cCCcceEEecCCChHHHHHHHhhhhcCCC--CCchhHhhhc
Q 039455          174 G-HGVTNIYKVRGLDYVEALQLFHLKVSKGK--QPTDDRVELS  213 (216)
Q Consensus       174 ~-~~~~~~~~l~~l~~~~~~~ll~~~~~~~~--~~~~~~~~l~  213 (216)
                      . ......+++.|++.++..+++...+...+  .+++.++.|+
T Consensus       148 ~l~sr~~~i~~~~~~~~~~~~~l~~~~~~~~~~i~~~~l~~l~  190 (319)
T 2chq_A          148 PIQSRCAVFRFKPVPKEAMKKRLLEICEKEGVKITEDGLEALI  190 (319)
T ss_dssp             HHHTTCEEEECCCCCHHHHHHHHHHHHHTTCCCBCHHHHHHHH
T ss_pred             HHHhhCeEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHH
Confidence            1 12335899999999999999987764433  2344444443

>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C

Probab=99.27  E-value=6.5e-11  Score=94.18  Aligned_cols=170  Identities=16%  Similarity=0.134  Sum_probs=98.5

Q ss_pred             CCcccccccchhHHHHHHHHHh----------cCCCCeeEEEEEecCCCcHHHHHHHHHHHhcCCCCceEeecccccccc
Q 039455           22 PSAVDGLVGIASRMEKMNGYLE----------AGLDDVRFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLANVREVSV   91 (216)
Q Consensus        22 ~~~~~~~vgR~~~~~~l~~~l~----------~~~~~~~~i~I~G~~GiGKTtL~~~~~~~~~~~~~~~~~~~~~~~~~~   91 (216)
                      +.....++|.+..++.|...+.          ........+.|+||+|+|||+||+.+++.....|   +.+. ...   
T Consensus        14 ~~~~~di~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~aia~~~~~~~---~~v~-~~~---   86 (322)
T 3eie_A           14 NVKWEDVAGLEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLAKAVATEANSTF---FSVS-SSD---   86 (322)
T ss_dssp             CCCGGGSCSCHHHHHHHHHHTHHHHHCGGGCCTTCCCCCEEEEECSSSSCHHHHHHHHHHHHTCEE---EEEE-HHH---
T ss_pred             CCCHHHhcChHHHHHHHHHHHHHHHhCHHHHhcCCCCCCeEEEECCCCCcHHHHHHHHHHHHCCCE---EEEc-hHH---
Confidence            3446779999999999988762          1122346899999999999999999998764321   1221 111   


Q ss_pred             ccCchHHHHHHHHHHHhhccccccchhhhHHHHHHHhCCceEEEEEeCCCCHH-------------HHHHhh---cCCCC
Q 039455           92 TRGLVPLQEQLLSEVLMERNLIIWDVHKGINLIRWRLCRKRVLVVLDDVDQLE-------------QLQALA---GNHDW  155 (216)
Q Consensus        92 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~llvlDd~~~~~-------------~~~~l~---~~~~~  155 (216)
                                +.....      ..........+......++.+|+|||++.+.             ....++   ..+..
T Consensus        87 ----------l~~~~~------g~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~  150 (322)
T 3eie_A           87 ----------LVSKWM------GESEKLVKQLFAMARENKPSIIFIDQVDALTGTRGEGESEASRRIKTELLVQMNGVGN  150 (322)
T ss_dssp             ----------HHTTTG------GGHHHHHHHHHHHHHHTSSEEEEEECGGGGSCC------CCTHHHHHHHHHHHGGGGT
T ss_pred             ----------Hhhccc------chHHHHHHHHHHHHHhcCCeEEEechhhhhhccCCCCcchHHHHHHHHHHHHhccccc
Confidence                      100000      0001111122222333567899999997431             122222   22211


Q ss_pred             CCCCcEEEEEeCCchhhhc---cCCcceEEecCCChHHHHHHHhhhhcCCC--CCchhHhhhcc
Q 039455          156 FGFGSRIIITTRDEHVLKG---HGVTNIYKVRGLDYVEALQLFHLKVSKGK--QPTDDRVELSK  214 (216)
Q Consensus       156 ~~~~~~il~tsr~~~~~~~---~~~~~~~~l~~l~~~~~~~ll~~~~~~~~--~~~~~~~~l~~  214 (216)
                      ...+..+|.||..+..+..   ......+.+++.+.++..++|+..+....  .++..+..|++
T Consensus       151 ~~~~v~vi~atn~~~~ld~al~~Rf~~~i~~~~p~~~~r~~il~~~~~~~~~~~~~~~l~~la~  214 (322)
T 3eie_A          151 DSQGVLVLGATNIPWQLDSAIRRRFERRIYIPLPDLAARTTMFEINVGDTPCVLTKEDYRTLGA  214 (322)
T ss_dssp             SCCCEEEEEEESCGGGSCHHHHHHCCEEEECCCCCHHHHHHHHHHHHTTCCCCCCHHHHHHHHH
T ss_pred             cCCceEEEEecCChhhCCHHHHcccCeEEEeCCCCHHHHHHHHHHHhccCCCCCCHHHHHHHHH
Confidence            2344556667765433211   12457789999999999999998875543  24456666654

>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}

Probab=99.25  E-value=9.9e-11  Score=94.44  Aligned_cols=171  Identities=12%  Similarity=0.086  Sum_probs=95.8

Q ss_pred             CCCcccccccchhHHHHHHHHHhc----------CCCCeeEEEEEecCCCcHHHHHHHHHHHhcCCCCceEeeccccccc
Q 039455           21 FPSAVDGLVGIASRMEKMNGYLEA----------GLDDVRFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLANVREVS   90 (216)
Q Consensus        21 ~~~~~~~~vgR~~~~~~l~~~l~~----------~~~~~~~i~I~G~~GiGKTtL~~~~~~~~~~~~~~~~~~~~~~~~~   90 (216)
                      ++.....++|.+..++.|...+..          .......++|+|++|+|||+||+.++......   .+.+. .....
T Consensus        79 ~~~~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~aia~~~~~~---~~~i~-~~~l~  154 (357)
T 3d8b_A           79 PPVNWEDIAGVEFAKATIKEIVVWPMLRPDIFTGLRGPPKGILLFGPPGTGKTLIGKCIASQSGAT---FFSIS-ASSLT  154 (357)
T ss_dssp             CCCCGGGSCSCHHHHHHHHHHTHHHHHCTTTSCGGGSCCSEEEEESSTTSSHHHHHHHHHHHTTCE---EEEEE-GGGGC
T ss_pred             CCCCHHHhCChHHHHHHHHHHHHHHhhChHhHhhccCCCceEEEECCCCCCHHHHHHHHHHHcCCe---EEEEe-hHHhh
Confidence            344567799999999999887642          11335689999999999999999999876321   12222 11110


Q ss_pred             cccCchHHHHHHHHHHHhhccccccchhhhHHHHHHHhCCceEEEEEeCCCCH-------------HHHHHhhcCC---C
Q 039455           91 VTRGLVPLQEQLLSEVLMERNLIIWDVHKGINLIRWRLCRKRVLVVLDDVDQL-------------EQLQALAGNH---D  154 (216)
Q Consensus        91 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~llvlDd~~~~-------------~~~~~l~~~~---~  154 (216)
                        ..+.......                 ....+......++.+|+|||++.+             .....++..+   .
T Consensus       155 --~~~~g~~~~~-----------------~~~~~~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~lL~~l~~~~  215 (357)
T 3d8b_A          155 --SKWVGEGEKM-----------------VRALFAVARCQQPAVIFIDEIDSLLSQRGDGEHESSRRIKTEFLVQLDGAT  215 (357)
T ss_dssp             --CSSTTHHHHH-----------------HHHHHHHHHHTCSEEEEEETHHHHTBC------CHHHHHHHHHHHHHHC--
T ss_pred             --ccccchHHHH-----------------HHHHHHHHHhcCCeEEEEeCchhhhccCCCCcchHHHHHHHHHHHHHhccc
Confidence              0110000111                 111122222356789999999543             1122222211   1


Q ss_pred             -CCCCCcEEEEEeCCchhhhc---cCCcceEEecCCChHHHHHHHhhhhcCCC--CCchhHhhhcc
Q 039455          155 -WFGFGSRIIITTRDEHVLKG---HGVTNIYKVRGLDYVEALQLFHLKVSKGK--QPTDDRVELSK  214 (216)
Q Consensus       155 -~~~~~~~il~tsr~~~~~~~---~~~~~~~~l~~l~~~~~~~ll~~~~~~~~--~~~~~~~~l~~  214 (216)
                       ....+..+|.||........   ......+.+++.+.++..+++...+...+  .+++.++.|++
T Consensus       216 ~~~~~~v~vI~atn~~~~l~~~l~~Rf~~~i~i~~p~~~~r~~il~~~~~~~~~~l~~~~l~~la~  281 (357)
T 3d8b_A          216 TSSEDRILVVGATNRPQEIDEAARRRLVKRLYIPLPEASARKQIVINLMSKEQCCLSEEEIEQIVQ  281 (357)
T ss_dssp             --CCCCEEEEEEESCGGGBCHHHHTTCCEEEECCCCCHHHHHHHHHHHHHTSCBCCCHHHHHHHHH
T ss_pred             ccCCCCEEEEEecCChhhCCHHHHhhCceEEEeCCcCHHHHHHHHHHHHhhcCCCccHHHHHHHHH
Confidence             11234556667765432111   12456789999999999999987664332  33445555543

>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*

Probab=99.24  E-value=1.2e-10  Score=94.03  Aligned_cols=165  Identities=14%  Similarity=0.124  Sum_probs=92.2

Q ss_pred             cccccccchhHHHHHHHHHhcCCCCeeEEEEEecCCCcHHHHHHHHHHHhcCCCCceEeeccccccccccCchHHHHHHH
Q 039455           24 AVDGLVGIASRMEKMNGYLEAGLDDVRFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLANVREVSVTRGLVPLQEQLL  103 (216)
Q Consensus        24 ~~~~~vgR~~~~~~l~~~l~~~~~~~~~i~I~G~~GiGKTtL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  103 (216)
                      ...+++||+..++.+...+..+ .....+.|+|++|+|||++++.++..+....... ... +       .....+..+.
T Consensus        14 ~~~~~vg~~~~~~~L~~~l~~~-~~~~~~ll~G~~G~GKT~la~~la~~l~~~~~~~-~~~-~-------~~~~~~~~~~   83 (373)
T 1jr3_A           14 TFADVVGQEHVLTALANGLSLG-RIHHAYLFSGTRGVGKTSIARLLAKGLNCETGIT-ATP-C-------GVCDNCREIE   83 (373)
T ss_dssp             STTTSCSCHHHHHHHHHHHHHT-CCCSEEEEESCTTSSHHHHHHHHHHHHSCTTCSC-SSC-C-------SSSHHHHHHH
T ss_pred             chhhccCcHHHHHHHHHHHHhC-CCCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCC-CCC-C-------cccHHHHHHh
Confidence            3456999999999999988754 2235789999999999999999998765322110 000 0       0000000000


Q ss_pred             HH----HHhhccccccchhhhHHHHHHHh-----CCceEEEEEeCCCCH--HHHHHhhcCCCCCCCCcEEEEEeCCchh-
Q 039455          104 SE----VLMERNLIIWDVHKGINLIRWRL-----CRKRVLVVLDDVDQL--EQLQALAGNHDWFGFGSRIIITTRDEHV-  171 (216)
Q Consensus       104 ~~----~~~~~~~~~~~~~~~~~~l~~~l-----~~~~~llvlDd~~~~--~~~~~l~~~~~~~~~~~~il~tsr~~~~-  171 (216)
                      ..    +...........+. ...+...+     .+++.+++|||++..  +....++..+.....+..+|++|+...- 
T Consensus        84 ~~~~~~~~~~~~~~~~~~~~-~~~l~~~~~~~~~~~~~~vliiDe~~~l~~~~~~~Ll~~le~~~~~~~~Il~~~~~~~l  162 (373)
T 1jr3_A           84 QGRFVDLIEIDAASRTKVED-TRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKL  162 (373)
T ss_dssp             TSCCSSCEEEETTCSCCSSC-HHHHHHHTTSCCSSSSSEEEEEECGGGSCHHHHHHHHHHHHSCCSSEEEEEEESCGGGS
T ss_pred             ccCCCceEEecccccCCHHH-HHHHHHHHhhccccCCeEEEEEECcchhcHHHHHHHHHHHhcCCCceEEEEEeCChHhC
Confidence            00    00000000001111 22222222     245789999999754  3344443333222345667777765432 


Q ss_pred             hhc-cCCcceEEecCCChHHHHHHHhhhh
Q 039455          172 LKG-HGVTNIYKVRGLDYVEALQLFHLKV  199 (216)
Q Consensus       172 ~~~-~~~~~~~~l~~l~~~~~~~ll~~~~  199 (216)
                      ... ......+++++++.++..+++...+
T Consensus       163 ~~~l~sr~~~i~~~~l~~~~~~~~l~~~~  191 (373)
T 1jr3_A          163 PVTILSRCLQFHLKALDVEQIRHQLEHIL  191 (373)
T ss_dssp             CHHHHTTSEEEECCCCCHHHHHHHHHHHH
T ss_pred             cHHHHhheeEeeCCCCCHHHHHHHHHHHH
Confidence            111 1234789999999999999998765

>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*

Probab=99.23  E-value=7.5e-11  Score=97.68  Aligned_cols=168  Identities=16%  Similarity=0.158  Sum_probs=94.8

Q ss_pred             ccccc-cchhHH--HHHHHHHhcCCCCeeEEEEEecCCCcHHHHHHHHHHHhcCCCCc--eEeeccccccccccCchHHH
Q 039455           25 VDGLV-GIASRM--EKMNGYLEAGLDDVRFIGICGMGGIGKTTLAKVLYNTLKDQFEA--SSFLANVREVSVTRGLVPLQ   99 (216)
Q Consensus        25 ~~~~v-gR~~~~--~~l~~~l~~~~~~~~~i~I~G~~GiGKTtL~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~   99 (216)
                      -+.|+ |.....  ..+..+...... ...++|+|++|+|||||++.+++.+...++.  +.++. ..         .+.
T Consensus       104 fd~fv~g~~n~~a~~~~~~~a~~~~~-~~~lll~Gp~G~GKTtLa~aia~~l~~~~~~~~v~~v~-~~---------~~~  172 (440)
T 2z4s_A          104 FENFVVGPGNSFAYHAALEVAKHPGR-YNPLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYIT-SE---------KFL  172 (440)
T ss_dssp             GGGCCCCTTTHHHHHHHHHHHHSTTS-SCCEEEECSSSSSHHHHHHHHHHHHHHHCCSSCEEEEE-HH---------HHH
T ss_pred             hhhcCCCCchHHHHHHHHHHHhCCCC-CCeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEee-HH---------HHH
Confidence            34566 655443  234444443322 6789999999999999999999977554433  23332 11         122


Q ss_pred             HHHHHHHHhhccccccchhhhHHHHHHHhCCceEEEEEeCCCCHH----HHHHhhcCCCC-CCCCcEEEEEeCCch----
Q 039455          100 EQLLSEVLMERNLIIWDVHKGINLIRWRLCRKRVLVVLDDVDQLE----QLQALAGNHDW-FGFGSRIIITTRDEH----  170 (216)
Q Consensus       100 ~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~llvlDd~~~~~----~~~~l~~~~~~-~~~~~~il~tsr~~~----  170 (216)
                      ..+...+...          ....+...+..++.+|+|||++...    ....++..+.. ...+..||+||+.+.    
T Consensus       173 ~~~~~~~~~~----------~~~~~~~~~~~~~~vL~IDEi~~l~~~~~~q~~l~~~l~~l~~~~~~iIitt~~~~~~l~  242 (440)
T 2z4s_A          173 NDLVDSMKEG----------KLNEFREKYRKKVDILLIDDVQFLIGKTGVQTELFHTFNELHDSGKQIVICSDREPQKLS  242 (440)
T ss_dssp             HHHHHHHHTT----------CHHHHHHHHTTTCSEEEEECGGGGSSCHHHHHHHHHHHHHHHTTTCEEEEEESSCGGGCS
T ss_pred             HHHHHHHHcc----------cHHHHHHHhcCCCCEEEEeCcccccCChHHHHHHHHHHHHHHHCCCeEEEEECCCHHHHH
Confidence            2333222111          1122333344467799999996432    12222222110 134677888888632    


Q ss_pred             -----hhhccCCcceEEecCCChHHHHHHHhhhhcC--CCCCchhHhhhc
Q 039455          171 -----VLKGHGVTNIYKVRGLDYVEALQLFHLKVSK--GKQPTDDRVELS  213 (216)
Q Consensus       171 -----~~~~~~~~~~~~l~~l~~~~~~~ll~~~~~~--~~~~~~~~~~l~  213 (216)
                           +.+++.....+.+++++.++..+++.+.+..  -..+++.+..|+
T Consensus       243 ~l~~~L~sR~~~g~~i~l~~p~~e~r~~iL~~~~~~~~~~i~~e~l~~la  292 (440)
T 2z4s_A          243 EFQDRLVSRFQMGLVAKLEPPDEETRKSIARKMLEIEHGELPEEVLNFVA  292 (440)
T ss_dssp             SCCHHHHHHHHSSBCCBCCCCCHHHHHHHHHHHHHHHTCCCCTTHHHHHH
T ss_pred             HHHHHHHhhccCCeEEEeCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHH
Confidence                 2222223467899999999999999887632  223445555554

>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}

Probab=99.21  E-value=9.4e-10  Score=87.49  Aligned_cols=171  Identities=15%  Similarity=0.100  Sum_probs=96.5

Q ss_pred             CCcccccccchhHHHHHHHHHhc----------CCCCeeEEEEEecCCCcHHHHHHHHHHHhcCCCCceEeecccccccc
Q 039455           22 PSAVDGLVGIASRMEKMNGYLEA----------GLDDVRFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLANVREVSV   91 (216)
Q Consensus        22 ~~~~~~~vgR~~~~~~l~~~l~~----------~~~~~~~i~I~G~~GiGKTtL~~~~~~~~~~~~~~~~~~~~~~~~~~   91 (216)
                      +.....++|.+...+.|...+..          .....+.+.|+||+|+|||+||+.++......  ..+.+. ..... 
T Consensus         8 ~~~~~di~G~~~~k~~l~~~v~~p~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~ala~~~~~~--~~~~i~-~~~l~-   83 (322)
T 1xwi_A            8 NVKWSDVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLAKAVATEANNS--TFFSIS-SSDLV-   83 (322)
T ss_dssp             CCCGGGSCSCHHHHHHHHHHHHHHHHCGGGSCTTCCCCSEEEEESSSSSCHHHHHHHHHHHTTSC--EEEEEE-CCSSC-
T ss_pred             CCCHHHhcCHHHHHHHHHHHHHHHHhCHHHHhCCCCCCceEEEECCCCccHHHHHHHHHHHcCCC--cEEEEE-hHHHH-
Confidence            34467799999999998876531          11224689999999999999999999876211  111221 11100 


Q ss_pred             ccCchHHHHHHHHHHHhhccccccchhhhHHHHHHHhCCceEEEEEeCCCCH-------------HHHHHhhc---CCCC
Q 039455           92 TRGLVPLQEQLLSEVLMERNLIIWDVHKGINLIRWRLCRKRVLVVLDDVDQL-------------EQLQALAG---NHDW  155 (216)
Q Consensus        92 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~llvlDd~~~~-------------~~~~~l~~---~~~~  155 (216)
                       ..+.                 ..........+......++.+|+|||++..             .....++.   .+..
T Consensus        84 -~~~~-----------------g~~~~~~~~lf~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~ld~~~~  145 (322)
T 1xwi_A           84 -SKWL-----------------GESEKLVKNLFQLARENKPSIIFIDEIDSLCGSRSENESEAARRIKTEFLVQMQGVGV  145 (322)
T ss_dssp             -CSSC-----------------CSCHHHHHHHHHHHHHTSSEEEEEETTTGGGCCSSSCCTTHHHHHHHHHHHHHHCSSS
T ss_pred             -hhhh-----------------hHHHHHHHHHHHHHHhcCCcEEEeecHHHhccccccccchHHHHHHHHHHHHHhcccc
Confidence             0000                 000011111222222356789999999755             11222222   1211


Q ss_pred             CCCCcEEEEEeCCchhhhc---cCCcceEEecCCChHHHHHHHhhhhcCCC--CCchhHhhhcc
Q 039455          156 FGFGSRIIITTRDEHVLKG---HGVTNIYKVRGLDYVEALQLFHLKVSKGK--QPTDDRVELSK  214 (216)
Q Consensus       156 ~~~~~~il~tsr~~~~~~~---~~~~~~~~l~~l~~~~~~~ll~~~~~~~~--~~~~~~~~l~~  214 (216)
                      ...+..+|.||..+.....   ......+.+++.+.++..++|+.......  .++..++.|++
T Consensus       146 ~~~~v~vI~atn~~~~ld~al~rRf~~~i~i~~P~~~~r~~il~~~l~~~~~~l~~~~l~~la~  209 (322)
T 1xwi_A          146 DNDGILVLGATNIPWVLDSAIRRRFEKRIYIPLPEPHARAAMFKLHLGTTQNSLTEADFRELGR  209 (322)
T ss_dssp             CCTTEEEEEEESCTTTSCHHHHHTCCEEEECCCCCHHHHHHHHHHHHTTCCBCCCHHHHHHHHH
T ss_pred             cCCCEEEEEecCCcccCCHHHHhhcCeEEEeCCcCHHHHHHHHHHHHhcCCCCCCHHHHHHHHH
Confidence            1234556666765432111   13457889999999999999988764433  24456666654

>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=99.20  E-value=1e-10  Score=94.06  Aligned_cols=183  Identities=13%  Similarity=0.125  Sum_probs=95.0

Q ss_pred             CCcccccccchhHHHHHHHHH-hcCCCCeeEEEEEecCCCcHHHHHHHHHHHhcCCCCceEeecc------------ccc
Q 039455           22 PSAVDGLVGIASRMEKMNGYL-EAGLDDVRFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLAN------------VRE   88 (216)
Q Consensus        22 ~~~~~~~vgR~~~~~~l~~~l-~~~~~~~~~i~I~G~~GiGKTtL~~~~~~~~~~~~~~~~~~~~------------~~~   88 (216)
                      |..-..++|++...+.+..++ ..+ . .+.++|+||+|+||||+++.+++.+.........+..            +..
T Consensus        10 P~~~~~~vg~~~~~~~l~~~~~~~~-~-~~~~ll~Gp~G~GKTtl~~~la~~l~~~~~g~i~~~~~~~~~~~~~~~~~~~   87 (354)
T 1sxj_E           10 PKSLNALSHNEELTNFLKSLSDQPR-D-LPHLLLYGPNGTGKKTRCMALLESIFGPGVYRLKIDVRQFVTASNRKLELNV   87 (354)
T ss_dssp             CCSGGGCCSCHHHHHHHHTTTTCTT-C-CCCEEEECSTTSSHHHHHHTHHHHHSCTTCCC------------------CC
T ss_pred             CCCHHHhcCCHHHHHHHHHHHhhCC-C-CCeEEEECCCCCCHHHHHHHHHHHHcCCCCCeEEecceeecccccccceeee
Confidence            445577999999999999987 432 2 2339999999999999999999864322111111100            000


Q ss_pred             --------ccc-ccCchH--HHHHHHHHHHhhccccccchhhhHHHHHHHhCCceEEEEEeCCCCHH--HHHHhhcCCCC
Q 039455           89 --------VSV-TRGLVP--LQEQLLSEVLMERNLIIWDVHKGINLIRWRLCRKRVLVVLDDVDQLE--QLQALAGNHDW  155 (216)
Q Consensus        89 --------~~~-~~~~~~--~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~llvlDd~~~~~--~~~~l~~~~~~  155 (216)
                              ... ......  .....+..+......     .... .+. -+..++-+++||+++..+  ....+...+..
T Consensus        88 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-----~~~~-~ls-~l~~~~~vlilDE~~~L~~~~~~~L~~~le~  160 (354)
T 1sxj_E           88 VSSPYHLEITPSDMGNNDRIVIQELLKEVAQMEQV-----DFQD-SKD-GLAHRYKCVIINEANSLTKDAQAALRRTMEK  160 (354)
T ss_dssp             EECSSEEEECCC----CCHHHHHHHHHHHTTTTC-------------------CCEEEEEECTTSSCHHHHHHHHHHHHH
T ss_pred             ecccceEEecHhhcCCcchHHHHHHHHHHHHhccc-----cccc-ccc-ccCCCCeEEEEeCccccCHHHHHHHHHHHHh
Confidence                    000 000000  011111111100000     0000 000 023467799999997652  22223322221


Q ss_pred             CCCCcEEEEEeCCchh-hhcc-CCcceEEecCCChHHHHHHHhhhhcCCC--CC-chhHhhhc
Q 039455          156 FGFGSRIIITTRDEHV-LKGH-GVTNIYKVRGLDYVEALQLFHLKVSKGK--QP-TDDRVELS  213 (216)
Q Consensus       156 ~~~~~~il~tsr~~~~-~~~~-~~~~~~~l~~l~~~~~~~ll~~~~~~~~--~~-~~~~~~l~  213 (216)
                      ...+..+|++|++... ...+ .....++++|++.++..+++...+...+  .+ ++.++.|+
T Consensus       161 ~~~~~~~Il~t~~~~~l~~~l~sR~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~i~  223 (354)
T 1sxj_E          161 YSKNIRLIMVCDSMSPIIAPIKSQCLLIRCPAPSDSEISTILSDVVTNERIQLETKDILKRIA  223 (354)
T ss_dssp             STTTEEEEEEESCSCSSCHHHHTTSEEEECCCCCHHHHHHHHHHHHHHHTCEECCSHHHHHHH
T ss_pred             hcCCCEEEEEeCCHHHHHHHHHhhceEEecCCcCHHHHHHHHHHHHHHcCCCCCcHHHHHHHH
Confidence            1346788888887532 1111 2237899999999999999987663332  23 44555544

>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A

Probab=99.20  E-value=8.9e-12  Score=94.55  Aligned_cols=158  Identities=14%  Similarity=0.085  Sum_probs=88.4

Q ss_pred             cccccccch---hHHHHHHHHHhcCCCCeeEEEEEecCCCcHHHHHHHHHHHhcCCCCceEeeccccccccccCchHHHH
Q 039455           24 AVDGLVGIA---SRMEKMNGYLEAGLDDVRFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLANVREVSVTRGLVPLQE  100 (216)
Q Consensus        24 ~~~~~vgR~---~~~~~l~~~l~~~~~~~~~i~I~G~~GiGKTtL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  100 (216)
                      .-+.|+|+.   ..++.+..+....  ....++|+|++|+|||+|++.++.........+.|+.. ....  .....   
T Consensus        26 ~~~~~~~~~~~~~~~~~l~~~~~~~--~~~~~ll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~-~~~~--~~~~~---   97 (242)
T 3bos_A           26 TFTSYYPAAGNDELIGALKSAASGD--GVQAIYLWGPVKSGRTHLIHAACARANELERRSFYIPL-GIHA--SISTA---   97 (242)
T ss_dssp             STTTSCC--CCHHHHHHHHHHHHTC--SCSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEG-GGGG--GSCGG---
T ss_pred             ChhhccCCCCCHHHHHHHHHHHhCC--CCCeEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEH-HHHH--HHHHH---
Confidence            446788743   5566666666542  45789999999999999999999877654344555542 1110  00000   


Q ss_pred             HHHHHHHhhccccccchhhhHHHHHHHhCCceEEEEEeCCCCHH--H--HHHhhcCCCCC-CCCc-EEEEEeCCch----
Q 039455          101 QLLSEVLMERNLIIWDVHKGINLIRWRLCRKRVLVVLDDVDQLE--Q--LQALAGNHDWF-GFGS-RIIITTRDEH----  170 (216)
Q Consensus       101 ~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~llvlDd~~~~~--~--~~~l~~~~~~~-~~~~-~il~tsr~~~----  170 (216)
                                         ..    ..+ .++.+|+|||++...  .  ...+...+... ..+. .+|+||+...    
T Consensus        98 -------------------~~----~~~-~~~~vliiDe~~~~~~~~~~~~~l~~~l~~~~~~~~~~ii~~~~~~~~~~~  153 (242)
T 3bos_A           98 -------------------LL----EGL-EQFDLICIDDVDAVAGHPLWEEAIFDLYNRVAEQKRGSLIVSASASPMEAG  153 (242)
T ss_dssp             -------------------GG----TTG-GGSSEEEEETGGGGTTCHHHHHHHHHHHHHHHHHCSCEEEEEESSCTTTTT
T ss_pred             -------------------HH----Hhc-cCCCEEEEeccccccCCHHHHHHHHHHHHHHHHcCCCeEEEEcCCCHHHHH
Confidence                               00    000 345699999996441  1  22222111100 1222 4777776432    


Q ss_pred             -----hhhccCCcceEEecCCChHHHHHHHhhhhcCCC--CCchhHhhhc
Q 039455          171 -----VLKGHGVTNIYKVRGLDYVEALQLFHLKVSKGK--QPTDDRVELS  213 (216)
Q Consensus       171 -----~~~~~~~~~~~~l~~l~~~~~~~ll~~~~~~~~--~~~~~~~~l~  213 (216)
                           +.+.+.....+++++++.++..+++...+...+  .+++.++.|+
T Consensus       154 ~~~~~l~~r~~~~~~i~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~  203 (242)
T 3bos_A          154 FVLPDLVSRMHWGLTYQLQPMMDDEKLAALQRRAAMRGLQLPEDVGRFLL  203 (242)
T ss_dssp             CCCHHHHHHHHHSEEEECCCCCGGGHHHHHHHHHHHTTCCCCHHHHHHHH
T ss_pred             HhhhhhhhHhhcCceEEeCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHH
Confidence                 111111227899999999999999988763222  3344444443

>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*

Probab=99.20  E-value=2.5e-10  Score=90.00  Aligned_cols=149  Identities=11%  Similarity=0.084  Sum_probs=87.7

Q ss_pred             ccccchhHHHHHHHHHhcC-------------CCCeeEEEEEecCCCcHHHHHHHHHHHhcCCCC----ceEeecccccc
Q 039455           27 GLVGIASRMEKMNGYLEAG-------------LDDVRFIGICGMGGIGKTTLAKVLYNTLKDQFE----ASSFLANVREV   89 (216)
Q Consensus        27 ~~vgR~~~~~~l~~~l~~~-------------~~~~~~i~I~G~~GiGKTtL~~~~~~~~~~~~~----~~~~~~~~~~~   89 (216)
                      .++|.+...+.+..++...             ......++|+||+|+|||++|+.+++.+.....    ....+. ....
T Consensus        32 ~i~G~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~vll~G~~GtGKT~la~~la~~l~~~~~~~~~~~~~~~-~~~l  110 (309)
T 3syl_A           32 ELIGLKPVKDRIRETAALLLVERARQKLGLAHETPTLHMSFTGNPGTGKTTVALKMAGLLHRLGYVRKGHLVSVT-RDDL  110 (309)
T ss_dssp             HSSSCHHHHHHHHHHHHHHHHHHHHHHHTCCSSCCCCEEEEEECTTSSHHHHHHHHHHHHHHTTSSSSCCEEEEC-GGGT
T ss_pred             HccChHHHHHHHHHHHHHHHhHHHHHHcCCCCCCCCceEEEECCCCCCHHHHHHHHHHHHHhcCCcCCCcEEEEc-HHHh
Confidence            5899999999988765411             234568999999999999999999987643211    122222 1111


Q ss_pred             ccccCchHHHHHHHHHHHhhccccccchhhhHHHHHHHhCCceEEEEEeCCCCH-----------HHHHHhhcCCCCCCC
Q 039455           90 SVTRGLVPLQEQLLSEVLMERNLIIWDVHKGINLIRWRLCRKRVLVVLDDVDQL-----------EQLQALAGNHDWFGF  158 (216)
Q Consensus        90 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~llvlDd~~~~-----------~~~~~l~~~~~~~~~  158 (216)
                      .  ..+...                 ........+...   .+.+|+|||++.+           +....++..+.....
T Consensus       111 ~--~~~~g~-----------------~~~~~~~~~~~~---~~~vl~iDEid~l~~~~~~~~~~~~~~~~Ll~~l~~~~~  168 (309)
T 3syl_A          111 V--GQYIGH-----------------TAPKTKEVLKRA---MGGVLFIDEAYYLYRPDNERDYGQEAIEILLQVMENNRD  168 (309)
T ss_dssp             C--CSSTTC-----------------HHHHHHHHHHHH---TTSEEEEETGGGSCCCC---CCTHHHHHHHHHHHHHCTT
T ss_pred             h--hhcccc-----------------cHHHHHHHHHhc---CCCEEEEEChhhhccCCCcccccHHHHHHHHHHHhcCCC
Confidence            0  000000                 000111111111   2349999999733           333444433322234


Q ss_pred             CcEEEEEeCCch----------hhhccCCcceEEecCCChHHHHHHHhhhhc
Q 039455          159 GSRIIITTRDEH----------VLKGHGVTNIYKVRGLDYVEALQLFHLKVS  200 (216)
Q Consensus       159 ~~~il~tsr~~~----------~~~~~~~~~~~~l~~l~~~~~~~ll~~~~~  200 (216)
                      +..+|+||....          +.++  ....+.+++++.++..+++...+.
T Consensus       169 ~~~~i~~~~~~~~~~~~~~~~~l~~R--~~~~i~~~~~~~~~~~~il~~~l~  218 (309)
T 3syl_A          169 DLVVILAGYADRMENFFQSNPGFRSR--IAHHIEFPDYSDEELFEIAGHMLD  218 (309)
T ss_dssp             TCEEEEEECHHHHHHHHHHSTTHHHH--EEEEEEECCCCHHHHHHHHHHHHH
T ss_pred             CEEEEEeCChHHHHHHHhhCHHHHHh--CCeEEEcCCcCHHHHHHHHHHHHH
Confidence            567788876432          2222  348899999999999999987764

>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=99.19  E-value=5.3e-10  Score=90.63  Aligned_cols=168  Identities=14%  Similarity=0.197  Sum_probs=99.1

Q ss_pred             cccccccchhHHHHHHHHHhc-----------CCCCeeEEEEEecCCCcHHHHHHHHHHHhcCCCCceEeeccccccccc
Q 039455           24 AVDGLVGIASRMEKMNGYLEA-----------GLDDVRFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLANVREVSVT   92 (216)
Q Consensus        24 ~~~~~vgR~~~~~~l~~~l~~-----------~~~~~~~i~I~G~~GiGKTtL~~~~~~~~~~~~~~~~~~~~~~~~~~~   92 (216)
                      ...+..|-++..++|.+.+..           +-...+-+.++||+|+|||.||+++++.....|   +.+. .+..  .
T Consensus       146 ~~~dIgGl~~~k~~l~e~v~~Pl~~pe~f~~~gi~~prGvLL~GPPGTGKTllAkAiA~e~~~~f---~~v~-~s~l--~  219 (405)
T 4b4t_J          146 TYDMVGGLTKQIKEIKEVIELPVKHPELFESLGIAQPKGVILYGPPGTGKTLLARAVAHHTDCKF---IRVS-GAEL--V  219 (405)
T ss_dssp             CGGGSCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCCEEEESCSSSSHHHHHHHHHHHHTCEE---EEEE-GGGG--S
T ss_pred             CHHHhCCHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCceEEeCCCCCCHHHHHHHHHHhhCCCc---eEEE-hHHh--h
Confidence            356788999999998775431           223357899999999999999999999875432   1121 1111  0


Q ss_pred             cCchHHHHHHHHHHHhhccccccchhhhHHHHHHHhCCceEEEEEeCCCCH----------------HHHHHhhcCCC--
Q 039455           93 RGLVPLQEQLLSEVLMERNLIIWDVHKGINLIRWRLCRKRVLVVLDDVDQL----------------EQLQALAGNHD--  154 (216)
Q Consensus        93 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~llvlDd~~~~----------------~~~~~l~~~~~--  154 (216)
                      ..+..-....                 ....+..+-...+++|+||++|..                ..+..++..+.  
T Consensus       220 sk~vGese~~-----------------vr~lF~~Ar~~aP~IIFiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~  282 (405)
T 4b4t_J          220 QKYIGEGSRM-----------------VRELFVMAREHAPSIIFMDEIDSIGSTRVEGSGGGDSEVQRTMLELLNQLDGF  282 (405)
T ss_dssp             CSSTTHHHHH-----------------HHHHHHHHHHTCSEEEEEESSSCCTTSCSCSSSGGGGHHHHHHHHHHHHHHTT
T ss_pred             ccccchHHHH-----------------HHHHHHHHHHhCCceEeeecchhhccCCCCCCCCCcHHHHHHHHHHHHhhhcc
Confidence            1111111111                 122233333467899999999743                01223332221  


Q ss_pred             CCCCCcEEEEEeCCchhhhc-----cCCcceEEecCCChHHHHHHHhhhhcCCC-CCchhHhhhcc
Q 039455          155 WFGFGSRIIITTRDEHVLKG-----HGVTNIYKVRGLDYVEALQLFHLKVSKGK-QPTDDRVELSK  214 (216)
Q Consensus       155 ~~~~~~~il~tsr~~~~~~~-----~~~~~~~~l~~l~~~~~~~ll~~~~~~~~-~~~~~~~~l~~  214 (216)
                      ....+..+|.||..++.++.     -..+..+.+++.+.++..++|+.+...-. ..+-++++|++
T Consensus       283 ~~~~~V~vIaATNrpd~LDpAllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~l~~dvdl~~lA~  348 (405)
T 4b4t_J          283 ETSKNIKIIMATNRLDILDPALLRPGRIDRKIEFPPPSVAARAEILRIHSRKMNLTRGINLRKVAE  348 (405)
T ss_dssp             TCCCCEEEEEEESCSSSSCHHHHSTTSSCCEEECCCCCHHHHHHHHHHHHTTSBCCSSCCHHHHHH
T ss_pred             CCCCCeEEEeccCChhhCCHhHcCCCcCceEEEcCCcCHHHHHHHHHHHhcCCCCCccCCHHHHHH
Confidence            11234566777776543221     13578999999999999999987764433 22335666654

>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}

Probab=99.19  E-value=8.8e-10  Score=84.75  Aligned_cols=155  Identities=17%  Similarity=0.172  Sum_probs=87.3

Q ss_pred             cccccccchhHHHHHHHHHhc---C-------CCCeeEEEEEecCCCcHHHHHHHHHHHhcCCCCceEeecccccccccc
Q 039455           24 AVDGLVGIASRMEKMNGYLEA---G-------LDDVRFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLANVREVSVTR   93 (216)
Q Consensus        24 ~~~~~vgR~~~~~~l~~~l~~---~-------~~~~~~i~I~G~~GiGKTtL~~~~~~~~~~~~~~~~~~~~~~~~~~~~   93 (216)
                      .-..++|.+...+.+.+++..   .       ......+.|+||+|+|||++|+.++......+   ..+. .....  .
T Consensus         4 ~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~vll~G~~GtGKT~la~~la~~~~~~~---~~~~-~~~~~--~   77 (262)
T 2qz4_A            4 SFKDVAGMHEAKLEVREFVDYLKSPERFLQLGAKVPKGALLLGPPGCGKTLLAKAVATEAQVPF---LAMA-GAEFV--E   77 (262)
T ss_dssp             CTTSSCSCHHHHHHHHHHHHHHHCCC------CCCCCEEEEESCTTSSHHHHHHHHHHHHTCCE---EEEE-TTTTS--S
T ss_pred             CHHHhCCHHHHHHHHHHHHHHHHCHHHHHHcCCCCCceEEEECCCCCCHHHHHHHHHHHhCCCE---EEec-hHHHH--h
Confidence            345689999998888776531   1       12346789999999999999999998764321   2222 11110  0


Q ss_pred             CchHHHHHHHHHHHhhccccccchhhhHHHHHHHhCCceEEEEEeCCCCH-----------------HHHHHhhcCCCC-
Q 039455           94 GLVPLQEQLLSEVLMERNLIIWDVHKGINLIRWRLCRKRVLVVLDDVDQL-----------------EQLQALAGNHDW-  155 (216)
Q Consensus        94 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~llvlDd~~~~-----------------~~~~~l~~~~~~-  155 (216)
                      .+....                 .......+.......+.+|+|||++..                 ..+..++..+.. 
T Consensus        78 ~~~~~~-----------------~~~~~~~~~~a~~~~~~vl~iDeid~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~  140 (262)
T 2qz4_A           78 VIGGLG-----------------AARVRSLFKEARARAPCIVYIDEIDAVGKKRSTTMSGFSNTEEEQTLNQLLVEMDGM  140 (262)
T ss_dssp             SSTTHH-----------------HHHHHHHHHHHHHTCSEEEEEECC-------------------CHHHHHHHHHHHTC
T ss_pred             hccChh-----------------HHHHHHHHHHHHhcCCeEEEEeCcchhhccccccccCccchhHHHHHHHHHHHhhCc
Confidence            000000                 011112233333345789999999764                 112233322111 


Q ss_pred             -CCCCcEEEEEeCCchhhhc--c---CCcceEEecCCChHHHHHHHhhhhcC
Q 039455          156 -FGFGSRIIITTRDEHVLKG--H---GVTNIYKVRGLDYVEALQLFHLKVSK  201 (216)
Q Consensus       156 -~~~~~~il~tsr~~~~~~~--~---~~~~~~~l~~l~~~~~~~ll~~~~~~  201 (216)
                       ...+..+|.||........  .   .....+.+++.+.++..++++..+..
T Consensus       141 ~~~~~~~vi~~tn~~~~ld~~l~~~~R~~~~i~i~~p~~~~r~~il~~~~~~  192 (262)
T 2qz4_A          141 GTTDHVIVLASTNRADILDGALMRPGRLDRHVFIDLPTLQERREIFEQHLKS  192 (262)
T ss_dssp             CTTCCEEEEEEESCGGGGGSGGGSTTSCCEEEECCSCCHHHHHHHHHHHHHH
T ss_pred             CCCCCEEEEecCCChhhcCHHHhcCCcCCeEEEeCCcCHHHHHHHHHHHHHh
Confidence             1234566677765442211  1   23477889999999999999876643

>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*

Probab=99.18  E-value=2.4e-10  Score=90.86  Aligned_cols=168  Identities=17%  Similarity=0.143  Sum_probs=90.6

Q ss_pred             cccccc-cchhH--HHHHHHHHhcCCCCeeEEEEEecCCCcHHHHHHHHHHHhcCCCCceEeeccccccccccCchHHHH
Q 039455           24 AVDGLV-GIASR--MEKMNGYLEAGLDDVRFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLANVREVSVTRGLVPLQE  100 (216)
Q Consensus        24 ~~~~~v-gR~~~--~~~l~~~l~~~~~~~~~i~I~G~~GiGKTtL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  100 (216)
                      .-+.|+ |....  ...+..++.........+.|+||+|+|||||++.+++.+......+.++. ..         .+..
T Consensus         9 ~f~~fv~g~~~~~a~~~~~~~~~~~~~~~~~lll~G~~GtGKT~la~~i~~~~~~~~~~~~~i~-~~---------~~~~   78 (324)
T 1l8q_A            9 TLENFIVGEGNRLAYEVVKEALENLGSLYNPIFIYGSVGTGKTHLLQAAGNEAKKRGYRVIYSS-AD---------DFAQ   78 (324)
T ss_dssp             CSSSCCCCTTTHHHHHHHHHHHHTTTTSCSSEEEECSSSSSHHHHHHHHHHHHHHTTCCEEEEE-HH---------HHHH
T ss_pred             CcccCCCCCcHHHHHHHHHHHHhCcCCCCCeEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEE-HH---------HHHH
Confidence            345565 54433  33455555544334578999999999999999999987754322333433 11         1122


Q ss_pred             HHHHHHHhhccccccchhhhHHHHHHHhCCceEEEEEeCCCCHH---H-HHHhhcCCCC-CCCCcEEEEEeCCch-----
Q 039455          101 QLLSEVLMERNLIIWDVHKGINLIRWRLCRKRVLVVLDDVDQLE---Q-LQALAGNHDW-FGFGSRIIITTRDEH-----  170 (216)
Q Consensus       101 ~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~llvlDd~~~~~---~-~~~l~~~~~~-~~~~~~il~tsr~~~-----  170 (216)
                      .+...+...          ....+.... .++.+|+|||++...   . ...+...+.. ...+..+|+|+....     
T Consensus        79 ~~~~~~~~~----------~~~~~~~~~-~~~~vL~iDEi~~l~~~~~~~~~l~~~l~~~~~~~~~iii~~~~~~~~l~~  147 (324)
T 1l8q_A           79 AMVEHLKKG----------TINEFRNMY-KSVDLLLLDDVQFLSGKERTQIEFFHIFNTLYLLEKQIILASDRHPQKLDG  147 (324)
T ss_dssp             HHHHHHHHT----------CHHHHHHHH-HTCSEEEEECGGGGTTCHHHHHHHHHHHHHHHHTTCEEEEEESSCGGGCTT
T ss_pred             HHHHHHHcC----------cHHHHHHHh-cCCCEEEEcCcccccCChHHHHHHHHHHHHHHHCCCeEEEEecCChHHHHH
Confidence            222222110          011122222 135699999996542   1 1222211110 023566777776432     


Q ss_pred             ----hhhccCCcceEEecCCChHHHHHHHhhhhcCCC--CCchhHhhhc
Q 039455          171 ----VLKGHGVTNIYKVRGLDYVEALQLFHLKVSKGK--QPTDDRVELS  213 (216)
Q Consensus       171 ----~~~~~~~~~~~~l~~l~~~~~~~ll~~~~~~~~--~~~~~~~~l~  213 (216)
                          +.+.+.....++++| +.++..+++...+...+  .+++.++.|+
T Consensus       148 l~~~L~sR~~~~~~i~l~~-~~~e~~~il~~~~~~~~~~l~~~~l~~l~  195 (324)
T 1l8q_A          148 VSDRLVSRFEGGILVEIEL-DNKTRFKIIKEKLKEFNLELRKEVIDYLL  195 (324)
T ss_dssp             SCHHHHHHHHTSEEEECCC-CHHHHHHHHHHHHHHTTCCCCHHHHHHHH
T ss_pred             hhhHhhhcccCceEEEeCC-CHHHHHHHHHHHHHhcCCCCCHHHHHHHH
Confidence                122222336799999 99999999988764322  3444555444

>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}

Probab=99.18  E-value=4.7e-09  Score=82.67  Aligned_cols=157  Identities=14%  Similarity=0.153  Sum_probs=94.3

Q ss_pred             CcccccccchhHHHHHHHHHhc-----------CCCCeeEEEEEecCCCcHHHHHHHHHHHhcCCCCceEeecccccccc
Q 039455           23 SAVDGLVGIASRMEKMNGYLEA-----------GLDDVRFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLANVREVSV   91 (216)
Q Consensus        23 ~~~~~~vgR~~~~~~l~~~l~~-----------~~~~~~~i~I~G~~GiGKTtL~~~~~~~~~~~~~~~~~~~~~~~~~~   91 (216)
                      .....++|.+..++.|..++..           +-.....+.|+||+|+|||+||+.++......   .+.+. .     
T Consensus        12 ~~~~di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~~vLL~Gp~GtGKT~la~ala~~~~~~---~i~v~-~-----   82 (301)
T 3cf0_A           12 VTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQAN---FISIK-G-----   82 (301)
T ss_dssp             CCGGGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCSEEEEECSSSSSHHHHHHHHHHHTTCE---EEEEC-H-----
T ss_pred             CCHHHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCceEEEECCCCcCHHHHHHHHHHHhCCC---EEEEE-h-----
Confidence            3456799999999998887642           12345789999999999999999999876421   12221 1     


Q ss_pred             ccCchHHHHHHHHHHHhhccccccchhhhHHHHHHHhCCceEEEEEeCCCCHHH----------------HHHhhcCCCC
Q 039455           92 TRGLVPLQEQLLSEVLMERNLIIWDVHKGINLIRWRLCRKRVLVVLDDVDQLEQ----------------LQALAGNHDW  155 (216)
Q Consensus        92 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~llvlDd~~~~~~----------------~~~l~~~~~~  155 (216)
                              ..+.....+..      .......+.......+.+|+||+++.+..                ...++..+..
T Consensus        83 --------~~l~~~~~g~~------~~~~~~~f~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~~~~lL~~l~~  148 (301)
T 3cf0_A           83 --------PELLTMWFGES------EANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDG  148 (301)
T ss_dssp             --------HHHHHHHHTTC------TTHHHHHHHHHHHTCSEEEEECSTTHHHHHHTTTTCCSSCSCCHHHHHHHHHHHS
T ss_pred             --------HHHHhhhcCch------HHHHHHHHHHHHhcCCeEEEEEChHHHhhccCCCcCCcchHHHHHHHHHHHHhhc
Confidence                    11222211111      11122334444445689999999975321                2222222110


Q ss_pred             --CCCCcEEEEEeCCchhhhc--c---CCcceEEecCCChHHHHHHHhhhhcCC
Q 039455          156 --FGFGSRIIITTRDEHVLKG--H---GVTNIYKVRGLDYVEALQLFHLKVSKG  202 (216)
Q Consensus       156 --~~~~~~il~tsr~~~~~~~--~---~~~~~~~l~~l~~~~~~~ll~~~~~~~  202 (216)
                        ...+..||.||..+.....  .   .....+.+++.+.++..++++......
T Consensus       149 ~~~~~~v~vi~atn~~~~ld~al~r~gRf~~~i~i~~p~~~~r~~il~~~l~~~  202 (301)
T 3cf0_A          149 MSTKKNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSRVAILKANLRKS  202 (301)
T ss_dssp             SCTTSSEEEEEEESCGGGSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTS
T ss_pred             ccCCCCEEEEEecCCccccChHHhcCCccceEEecCCcCHHHHHHHHHHHHccC
Confidence              1234667777776543221  1   245689999999999999998776443

>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*

Probab=99.16  E-value=4.1e-10  Score=90.97  Aligned_cols=52  Identities=25%  Similarity=0.309  Sum_probs=40.4

Q ss_pred             ccccccchhHHHHHH---HHHhcCCCCeeEEEEEecCCCcHHHHHHHHHHHhcCC
Q 039455           25 VDGLVGIASRMEKMN---GYLEAGLDDVRFIGICGMGGIGKTTLAKVLYNTLKDQ   76 (216)
Q Consensus        25 ~~~~vgR~~~~~~l~---~~l~~~~~~~~~i~I~G~~GiGKTtL~~~~~~~~~~~   76 (216)
                      ...|+|++...+.+.   ..+..+...+..+.|+||+|+|||++|+.++..+...
T Consensus        43 ~~~ivG~~~~~~~l~~l~~~~~~~~~~~~~vLl~GppGtGKT~la~~la~~l~~~   97 (368)
T 3uk6_A           43 SQGMVGQLAARRAAGVVLEMIREGKIAGRAVLIAGQPGTGKTAIAMGMAQALGPD   97 (368)
T ss_dssp             ETTEESCHHHHHHHHHHHHHHHTTCCTTCEEEEEESTTSSHHHHHHHHHHHHCSS
T ss_pred             hhhccChHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCCCHHHHHHHHHHHhccc
Confidence            557999999977754   4444443334689999999999999999999987644

>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=99.15  E-value=1.2e-09  Score=89.73  Aligned_cols=168  Identities=19%  Similarity=0.261  Sum_probs=98.1

Q ss_pred             cccccccchhHHHHHHHHHhc-----------CCCCeeEEEEEecCCCcHHHHHHHHHHHhcCCCCceEeeccccccccc
Q 039455           24 AVDGLVGIASRMEKMNGYLEA-----------GLDDVRFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLANVREVSVT   92 (216)
Q Consensus        24 ~~~~~vgR~~~~~~l~~~l~~-----------~~~~~~~i~I~G~~GiGKTtL~~~~~~~~~~~~~~~~~~~~~~~~~~~   92 (216)
                      ......|-++..++|...+..           +-.-.+-+.++||+|+|||+||+++++.....|   +.+. .+..  .
T Consensus       179 ~~~digGl~~~k~~l~e~v~~pl~~p~~f~~~g~~~prGvLL~GPPGtGKTllAkAiA~e~~~~~---~~v~-~s~l--~  252 (437)
T 4b4t_L          179 TFDGIGGLTEQIRELREVIELPLKNPEIFQRVGIKPPKGVLLYGPPGTGKTLLAKAVAATIGANF---IFSP-ASGI--V  252 (437)
T ss_dssp             CSGGGCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHHHTCEE---EEEE-GGGT--C
T ss_pred             ChhHhCChHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeEEEECCCCCcHHHHHHHHHHHhCCCE---EEEe-hhhh--c
Confidence            356788999999988776542           123357899999999999999999999875332   1121 1111  0


Q ss_pred             cCchHHHHHHHHHHHhhccccccchhhhHHHHHHHhCCceEEEEEeCCCCH----------------HHHHHhhcCCC--
Q 039455           93 RGLVPLQEQLLSEVLMERNLIIWDVHKGINLIRWRLCRKRVLVVLDDVDQL----------------EQLQALAGNHD--  154 (216)
Q Consensus        93 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~llvlDd~~~~----------------~~~~~l~~~~~--  154 (216)
                      ..+..-....                 ....+...-...+++|+||+++..                ..+..++..+.  
T Consensus       253 sk~~Gese~~-----------------ir~~F~~A~~~~P~IifiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~  315 (437)
T 4b4t_L          253 DKYIGESARI-----------------IREMFAYAKEHEPCIIFMDEVDAIGGRRFSEGTSADREIQRTLMELLTQMDGF  315 (437)
T ss_dssp             CSSSSHHHHH-----------------HHHHHHHHHHSCSEEEEEECCCSSSCCCSSSCCSSTTHHHHHHHHHHHHHHSS
T ss_pred             cccchHHHHH-----------------HHHHHHHHHhcCCceeeeecccccccccccCCCCcchHHHHHHHHHHHHhhcc
Confidence            0111111111                 122233333467899999999643                01223332221  


Q ss_pred             CCCCCcEEEEEeCCchhhhc--c---CCcceEEecCCChHHHHHHHhhhhcCCC-CCchhHhhhcc
Q 039455          155 WFGFGSRIIITTRDEHVLKG--H---GVTNIYKVRGLDYVEALQLFHLKVSKGK-QPTDDRVELSK  214 (216)
Q Consensus       155 ~~~~~~~il~tsr~~~~~~~--~---~~~~~~~l~~l~~~~~~~ll~~~~~~~~-~~~~~~~~l~~  214 (216)
                      ....+..||.||..++.+..  +   ..+..+.++..+.++..++|+.+...-. .++-++..|++
T Consensus       316 ~~~~~vivI~ATNrp~~LDpAllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~~~~d~dl~~lA~  381 (437)
T 4b4t_L          316 DNLGQTKIIMATNRPDTLDPALLRPGRLDRKVEIPLPNEAGRLEIFKIHTAKVKKTGEFDFEAAVK  381 (437)
T ss_dssp             SCTTSSEEEEEESSTTSSCTTTTSTTSEEEEECCCCCCHHHHHHHHHHHHHTSCBCSCCCHHHHHH
T ss_pred             cCCCCeEEEEecCCchhhCHHHhCCCccceeeecCCcCHHHHHHHHHHHhcCCCCCcccCHHHHHH
Confidence            11234567777776544322  1   1467899999999999999987764433 23334555553

>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}

Probab=99.14  E-value=7.1e-10  Score=90.44  Aligned_cols=169  Identities=14%  Similarity=0.048  Sum_probs=92.9

Q ss_pred             CCcccccccchhHHHHHHHHHhcC----------CCCeeEEEEEecCCCcHHHHHHHHHHHhcCCCCceEeecccccccc
Q 039455           22 PSAVDGLVGIASRMEKMNGYLEAG----------LDDVRFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLANVREVSV   91 (216)
Q Consensus        22 ~~~~~~~vgR~~~~~~l~~~l~~~----------~~~~~~i~I~G~~GiGKTtL~~~~~~~~~~~~~~~~~~~~~~~~~~   91 (216)
                      +.....++|.+..++.|..++...          ......++|+|++|+|||+||+.++......   .+.+. +.... 
T Consensus       111 ~~~~~~iiG~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~la~aia~~~~~~---~~~v~-~~~l~-  185 (389)
T 3vfd_A          111 AVKFDDIAGQDLAKQALQEIVILPSLRPELFTGLRAPARGLLLFGPPGNGKTMLAKAVAAESNAT---FFNIS-AASLT-  185 (389)
T ss_dssp             CCCGGGSCSCHHHHHHHHHHTHHHHHCTTTSCGGGCCCSEEEEESSTTSCHHHHHHHHHHHTTCE---EEEEC-SCCC--
T ss_pred             CCChHHhCCHHHHHHHHHHHHHHhccCHHHhcccCCCCceEEEECCCCCCHHHHHHHHHHhhcCc---EEEee-HHHhh-
Confidence            344567999999999998876311          1234789999999999999999998875322   12222 11110 


Q ss_pred             ccCchHHHHHHHHHHHhhccccccchhhhHHHHHHHhCCceEEEEEeCCCCH-------------HHHHHhhcCC---CC
Q 039455           92 TRGLVPLQEQLLSEVLMERNLIIWDVHKGINLIRWRLCRKRVLVVLDDVDQL-------------EQLQALAGNH---DW  155 (216)
Q Consensus        92 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~llvlDd~~~~-------------~~~~~l~~~~---~~  155 (216)
                        .      ....          .........+......++.+|+|||++.+             .....++..+   ..
T Consensus       186 --~------~~~g----------~~~~~~~~~~~~a~~~~~~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~  247 (389)
T 3vfd_A          186 --S------KYVG----------EGEKLVRALFAVARELQPSIIFIDQVDSLLCERREGEHDASRRLKTEFLIEFDGVQS  247 (389)
T ss_dssp             ------------------------CHHHHHHHHHHHHHSSSEEEEEETGGGGC--------CTHHHHHHHHHHHHHHHC-
T ss_pred             --c------cccc----------hHHHHHHHHHHHHHhcCCeEEEEECchhhcccCCCccchHHHHHHHHHHHHhhcccc
Confidence              0      0000          00011111222222345679999999654             1111222111   10


Q ss_pred             -CCCCcEEEEEeCCchhhhc---cCCcceEEecCCChHHHHHHHhhhhcCCC--CCchhHhhhc
Q 039455          156 -FGFGSRIIITTRDEHVLKG---HGVTNIYKVRGLDYVEALQLFHLKVSKGK--QPTDDRVELS  213 (216)
Q Consensus       156 -~~~~~~il~tsr~~~~~~~---~~~~~~~~l~~l~~~~~~~ll~~~~~~~~--~~~~~~~~l~  213 (216)
                       ......||.||.....+..   ......+.+.+.+.++..+++...+...+  ..++.+..|+
T Consensus       248 ~~~~~v~vI~atn~~~~l~~~l~~R~~~~i~i~~p~~~~r~~il~~~~~~~~~~l~~~~~~~la  311 (389)
T 3vfd_A          248 AGDDRVLVMGATNRPQELDEAVLRRFIKRVYVSLPNEETRLLLLKNLLCKQGSPLTQKELAQLA  311 (389)
T ss_dssp             ----CEEEEEEESCGGGCCHHHHTTCCEEEECCCCCHHHHHHHHHHHHTTSCCCSCHHHHHHHH
T ss_pred             cCCCCEEEEEecCCchhcCHHHHcCcceEEEcCCcCHHHHHHHHHHHHHhcCCCCCHHHHHHHH
Confidence             1223456666765432111   12446789999999999999987764433  3344555554

>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*

Probab=99.14  E-value=5.8e-10  Score=89.87  Aligned_cols=170  Identities=16%  Similarity=0.125  Sum_probs=96.4

Q ss_pred             CCcccccccchhHHHHHHHHHhc----------CCCCeeEEEEEecCCCcHHHHHHHHHHHhcCCCCceEeecccccccc
Q 039455           22 PSAVDGLVGIASRMEKMNGYLEA----------GLDDVRFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLANVREVSV   91 (216)
Q Consensus        22 ~~~~~~~vgR~~~~~~l~~~l~~----------~~~~~~~i~I~G~~GiGKTtL~~~~~~~~~~~~~~~~~~~~~~~~~~   91 (216)
                      +.....++|.+..++.|...+..          .......++|+||+|+|||+||+.++..+...|   +.+. ...   
T Consensus        47 ~~~~~di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~ala~~~~~~~---~~v~-~~~---  119 (355)
T 2qp9_X           47 NVKWEDVAGLEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLAKAVATEANSTF---FSVS-SSD---  119 (355)
T ss_dssp             CCCGGGSCCGGGHHHHHHHHTHHHHHCGGGGCSSCCCCCCEEEECSTTSCHHHHHHHHHHHHTCEE---EEEE-HHH---
T ss_pred             CCCHHHhCCHHHHHHHHHHHHHHHHhCHHHHhcCCCCCceEEEECCCCCcHHHHHHHHHHHhCCCE---EEee-HHH---
Confidence            34456799999999999887631          112235799999999999999999999874221   1111 111   


Q ss_pred             ccCchHHHHHHHHHHHhhccccccchhhhHHHHHHHhCCceEEEEEeCCCCHH-------------HHHHhhcC---CCC
Q 039455           92 TRGLVPLQEQLLSEVLMERNLIIWDVHKGINLIRWRLCRKRVLVVLDDVDQLE-------------QLQALAGN---HDW  155 (216)
Q Consensus        92 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~llvlDd~~~~~-------------~~~~l~~~---~~~  155 (216)
                                +..    ..  ...........+......++.+|+|||++.+.             ....++..   +..
T Consensus       120 ----------l~~----~~--~g~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~r~~~~~~~~~~~~~~ll~~l~~~~~  183 (355)
T 2qp9_X          120 ----------LVS----KW--MGESEKLVKQLFAMARENKPSIIFIDQVDALTGTRGEGESEASRRIKTELLVQMNGVGN  183 (355)
T ss_dssp             ----------HHS----CC-----CHHHHHHHHHHHHHTSSEEEEEECGGGGTC------CTHHHHHHHHHHHHHHHCC-
T ss_pred             ----------Hhh----hh--cchHHHHHHHHHHHHHHcCCeEEEEechHhhcccCCCCcchHHHHHHHHHHHHhhcccc
Confidence                      000    00  00001111122222333578899999997541             12222221   111


Q ss_pred             CCCCcEEEEEeCCchhhhc---cCCcceEEecCCChHHHHHHHhhhhcCCC--CCchhHhhhcc
Q 039455          156 FGFGSRIIITTRDEHVLKG---HGVTNIYKVRGLDYVEALQLFHLKVSKGK--QPTDDRVELSK  214 (216)
Q Consensus       156 ~~~~~~il~tsr~~~~~~~---~~~~~~~~l~~l~~~~~~~ll~~~~~~~~--~~~~~~~~l~~  214 (216)
                      ...+..+|.||..+.....   ......+.+++.+.++..++|..+.....  .++..++.|++
T Consensus       184 ~~~~v~vI~atn~~~~ld~al~rRf~~~i~i~~P~~~~r~~il~~~l~~~~~~~~~~~l~~la~  247 (355)
T 2qp9_X          184 DSQGVLVLGATNIPWQLDSAIRRRFERRIYIPLPDLAARTTMFEINVGDTPSVLTKEDYRTLGA  247 (355)
T ss_dssp             --CCEEEEEEESCGGGSCHHHHHTCCEEEECCCCCHHHHHHHHHHHHTTSCBCCCHHHHHHHHH
T ss_pred             cCCCeEEEeecCCcccCCHHHHcccCEEEEeCCcCHHHHHHHHHHHHhhCCCCCCHHHHHHHHH
Confidence            1234556667765432111   13567889999999999999998775443  23445665553

>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A

Probab=99.14  E-value=1.8e-09  Score=89.50  Aligned_cols=172  Identities=17%  Similarity=0.135  Sum_probs=99.8

Q ss_pred             CCCcccccccchhHHHHHHHHHhc----------CCCCeeEEEEEecCCCcHHHHHHHHHHHhcCCCCceEeeccccccc
Q 039455           21 FPSAVDGLVGIASRMEKMNGYLEA----------GLDDVRFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLANVREVS   90 (216)
Q Consensus        21 ~~~~~~~~vgR~~~~~~l~~~l~~----------~~~~~~~i~I~G~~GiGKTtL~~~~~~~~~~~~~~~~~~~~~~~~~   90 (216)
                      ++.....++|.+...+.|...+..          .......++|+||+|+|||+||+.++..+...  ..+.+. ...  
T Consensus       129 ~~~~~~di~G~~~~k~~l~~~v~~p~~~~~~~~~~~~~~~~vLL~GppGtGKT~lA~aia~~~~~~--~~~~v~-~~~--  203 (444)
T 2zan_A          129 PNVKWSDVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLAKAVATEANNS--TFFSIS-SSD--  203 (444)
T ss_dssp             CCCCGGGSCSCHHHHHHHHHHHTHHHHCTTTTSGGGCCCSEEEEECSTTSSHHHHHHHHHHHCCSS--EEEEEC-CC---
T ss_pred             CCCCHHHhcCHHHHHHHHHHHHHHHhhCHHHhhccCCCCceEEEECCCCCCHHHHHHHHHHHcCCC--CEEEEe-HHH--
Confidence            344567899999999999887631          11234689999999999999999999876211  112221 111  


Q ss_pred             cccCchHHHHHHHHHHHhhccccccchhhhHHHHHHHhCCceEEEEEeCCCCH-------------HHHHHhhcCCCCC-
Q 039455           91 VTRGLVPLQEQLLSEVLMERNLIIWDVHKGINLIRWRLCRKRVLVVLDDVDQL-------------EQLQALAGNHDWF-  156 (216)
Q Consensus        91 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~llvlDd~~~~-------------~~~~~l~~~~~~~-  156 (216)
                             +....    .+.      ........+......++.+|+|||++.+             .....++..+... 
T Consensus       204 -------l~~~~----~g~------~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~lL~~l~~~~  266 (444)
T 2zan_A          204 -------LVSKW----LGE------SEKLVKNLFQLARENKPSIIFIDEIDSLCGSRSENESEAARRIKTEFLVQMQGVG  266 (444)
T ss_dssp             -------------------------CCCTHHHHHHHHHHSCSEEEEESCTTTTCCCSSCCCCGGGHHHHHHHHTTTTCSS
T ss_pred             -------HHhhh----cch------HHHHHHHHHHHHHHcCCeEEEEechHhhccCCCCccccHHHHHHHHHHHHHhCcc
Confidence                   00000    000      0111122222233356789999999755             2234455444321 


Q ss_pred             --CCCcEEEEEeCCchhhhc---cCCcceEEecCCChHHHHHHHhhhhcCCC--CCchhHhhhcc
Q 039455          157 --GFGSRIIITTRDEHVLKG---HGVTNIYKVRGLDYVEALQLFHLKVSKGK--QPTDDRVELSK  214 (216)
Q Consensus       157 --~~~~~il~tsr~~~~~~~---~~~~~~~~l~~l~~~~~~~ll~~~~~~~~--~~~~~~~~l~~  214 (216)
                        ..+..||.||..+.....   ......+.+++.+.++..++|..+.....  .++..+..|++
T Consensus       267 ~~~~~v~vI~atn~~~~ld~al~rRf~~~i~i~~P~~~~r~~il~~~l~~~~~~l~~~~l~~la~  331 (444)
T 2zan_A          267 VDNDGILVLGATNIPWVLDSAIRRRFEKRIYIPLPEAHARAAMFRLHLGSTQNSLTEADFQELGR  331 (444)
T ss_dssp             CCCSSCEEEEEESCGGGSCHHHHTTCCEEEECCCCCHHHHHHHHHHHHTTSCEECCHHHHHHHHH
T ss_pred             cCCCCEEEEecCCCccccCHHHHhhcceEEEeCCcCHHHHHHHHHHHHhcCCCCCCHHHHHHHHH
Confidence              345666777765532211   13456888999999999999988775443  24455665553

>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=99.14  E-value=5.8e-10  Score=94.18  Aligned_cols=174  Identities=18%  Similarity=0.164  Sum_probs=96.2

Q ss_pred             CCcccccccchhHHHHHHHHHhcC---------------CCCeeEEEEEecCCCcHHHHHHHHHHHhcCCCCceEeeccc
Q 039455           22 PSAVDGLVGIASRMEKMNGYLEAG---------------LDDVRFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLANV   86 (216)
Q Consensus        22 ~~~~~~~vgR~~~~~~l~~~l~~~---------------~~~~~~i~I~G~~GiGKTtL~~~~~~~~~~~~~~~~~~~~~   86 (216)
                      |....+++|++..++.+..++...               .+..+.++|+||+|+|||++|+.++..+.  ++ ++.+. .
T Consensus        35 P~~~~dliG~~~~~~~L~~~l~~~~~~~~~~~~~~g~~~~~~~~~lLL~GppGtGKTtla~~la~~l~--~~-~i~in-~  110 (516)
T 1sxj_A           35 PTNLQQVCGNKGSVMKLKNWLANWENSKKNSFKHAGKDGSGVFRAAMLYGPPGIGKTTAAHLVAQELG--YD-ILEQN-A  110 (516)
T ss_dssp             CSSGGGCCSCHHHHHHHHHHHHTHHHHHHTTTCCCCTTSTTSCSEEEEECSTTSSHHHHHHHHHHHTT--CE-EEEEC-T
T ss_pred             CCCHHHhcCCHHHHHHHHHHHHHhHhhchhhccccCccCCCCCcEEEEECCCCCCHHHHHHHHHHHcC--CC-EEEEe-C
Confidence            345577999999999999988641               01346999999999999999999998772  22 22222 1


Q ss_pred             cccccccCchHHHHHHHHHHHhhccccccchhhhHHHHHH--HhCCceEEEEEeCCCCH--------HHHHHhhcCCCCC
Q 039455           87 REVSVTRGLVPLQEQLLSEVLMERNLIIWDVHKGINLIRW--RLCRKRVLVVLDDVDQL--------EQLQALAGNHDWF  156 (216)
Q Consensus        87 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~--~l~~~~~llvlDd~~~~--------~~~~~l~~~~~~~  156 (216)
                      ..   .... ......+.....     .............  ....++.+|+|||++..        ..+..++..    
T Consensus       111 s~---~~~~-~~~~~~i~~~~~-----~~~~~~~~~~~~~~~~~~~~~~vliIDEid~l~~~~~~~l~~L~~~l~~----  177 (516)
T 1sxj_A          111 SD---VRSK-TLLNAGVKNALD-----NMSVVGYFKHNEEAQNLNGKHFVIIMDEVDGMSGGDRGGVGQLAQFCRK----  177 (516)
T ss_dssp             TS---CCCH-HHHHHTGGGGTT-----BCCSTTTTTC----CCSSTTSEEEEECSGGGCCTTSTTHHHHHHHHHHH----
T ss_pred             CC---cchH-HHHHHHHHHHhc-----cccHHHHHhhhhhhhhccCCCeEEEEECCCccchhhHHHHHHHHHHHHh----
Confidence            11   1111 111111110000     0000000000000  11246789999999643        233333322    


Q ss_pred             CCCcEEEEEeCCch---hhhccCCcceEEecCCChHHHHHHHhhhhcCC--CCCchhHhhhc
Q 039455          157 GFGSRIIITTRDEH---VLKGHGVTNIYKVRGLDYVEALQLFHLKVSKG--KQPTDDRVELS  213 (216)
Q Consensus       157 ~~~~~il~tsr~~~---~~~~~~~~~~~~l~~l~~~~~~~ll~~~~~~~--~~~~~~~~~l~  213 (216)
                       .+..+|+++.+..   +.........+.+++++.++..+++...+...  ..+++.+..|+
T Consensus       178 -~~~~iIli~~~~~~~~l~~l~~r~~~i~f~~~~~~~~~~~L~~i~~~~~~~i~~~~l~~la  238 (516)
T 1sxj_A          178 -TSTPLILICNERNLPKMRPFDRVCLDIQFRRPDANSIKSRLMTIAIREKFKLDPNVIDRLI  238 (516)
T ss_dssp             -CSSCEEEEESCTTSSTTGGGTTTSEEEECCCCCHHHHHHHHHHHHHHHTCCCCTTHHHHHH
T ss_pred             -cCCCEEEEEcCCCCccchhhHhceEEEEeCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHH
Confidence             2344666665432   22222334689999999999999998765332  23445555554

>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}

Probab=99.12  E-value=2e-09  Score=89.88  Aligned_cols=149  Identities=12%  Similarity=0.074  Sum_probs=85.6

Q ss_pred             cccccccchhHHHHHHHHHhcCCCCeeEEEEEecCCCcHHHHHHHHHHHhcCCC-C----ceEeec-cccccccccCchH
Q 039455           24 AVDGLVGIASRMEKMNGYLEAGLDDVRFIGICGMGGIGKTTLAKVLYNTLKDQF-E----ASSFLA-NVREVSVTRGLVP   97 (216)
Q Consensus        24 ~~~~~vgR~~~~~~l~~~l~~~~~~~~~i~I~G~~GiGKTtL~~~~~~~~~~~~-~----~~~~~~-~~~~~~~~~~~~~   97 (216)
                      ..++++||+.+++.+...+...  ....++|+|++|+|||++++.++..+.... +    ...++. ++.          
T Consensus       178 ~ld~iiGr~~~i~~l~~~l~r~--~~~~~LL~G~pG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~~~----------  245 (468)
T 3pxg_A          178 SLDPVIGRSKEIQRVIEVLSRR--TKNNPVLIGEPGVGKTAIAEGLAQQIINNEVPEILRDKRVMTLDMG----------  245 (468)
T ss_dssp             CSCCCCCCHHHHHHHHHHHHCS--SSCEEEEESCTTTTTHHHHHHHHHHHHSSCSCTTTSSCCEECC-------------
T ss_pred             CCCCccCcHHHHHHHHHHHhcc--CCCCeEEECCCCCCHHHHHHHHHHHHHhCCCChhhcCCeEEEeeCC----------
Confidence            3457999999999999988753  235678999999999999999999864321 1    111111 010          


Q ss_pred             HHHHHHHHHHhhccccccchhhhHHHHHHHhCCceEEEEEeCCCCHHHHHHhhcCCCCCCCCcEEEEEeCCchhhhc---
Q 039455           98 LQEQLLSEVLMERNLIIWDVHKGINLIRWRLCRKRVLVVLDDVDQLEQLQALAGNHDWFGFGSRIIITTRDEHVLKG---  174 (216)
Q Consensus        98 ~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~llvlDd~~~~~~~~~l~~~~~~~~~~~~il~tsr~~~~~~~---  174 (216)
                            ....+    .  ........+...-..++.+|++|  ...+....+...+.  .....+|.+|...++...   
T Consensus       246 ------~~~~g----~--~e~~~~~~~~~~~~~~~~iLfiD--~~~~a~~~L~~~L~--~g~v~vI~at~~~e~~~~~~~  309 (468)
T 3pxg_A          246 ------TKYRG----E--FEDRLKKVMDEIRQAGNIILFID--AAIDASNILKPSLA--RGELQCIGATTLDEYRKYIEK  309 (468)
T ss_dssp             -------------------CTTHHHHHHHHHTCCCCEEEEC--C--------CCCTT--SSSCEEEEECCTTTTHHHHTT
T ss_pred             ------ccccc----h--HHHHHHHHHHHHHhcCCeEEEEe--CchhHHHHHHHhhc--CCCEEEEecCCHHHHHHHhhc
Confidence                  00000    0  00112222333334567899999  22233333444333  334666766665542110   


Q ss_pred             ----cCCcceEEecCCChHHHHHHHhhhhc
Q 039455          175 ----HGVTNIYKVRGLDYVEALQLFHLKVS  200 (216)
Q Consensus       175 ----~~~~~~~~l~~l~~~~~~~ll~~~~~  200 (216)
                          ...+..+.+++++.++..++|.....
T Consensus       310 ~~al~~Rf~~i~v~~p~~e~~~~iL~~~~~  339 (468)
T 3pxg_A          310 DAALERRFQPIQVDQPSVDESIQILQGLRD  339 (468)
T ss_dssp             CSHHHHSEEEEECCCCCHHHHHHHHHHTTT
T ss_pred             CHHHHHhCccceeCCCCHHHHHHHHHHHHH
Confidence                11345799999999999999986553

>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=99.12  E-value=1.8e-09  Score=88.81  Aligned_cols=167  Identities=17%  Similarity=0.185  Sum_probs=96.7

Q ss_pred             ccccccchhHHHHHHHHHhc-----------CCCCeeEEEEEecCCCcHHHHHHHHHHHhcCCCCceEeecccccccccc
Q 039455           25 VDGLVGIASRMEKMNGYLEA-----------GLDDVRFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLANVREVSVTR   93 (216)
Q Consensus        25 ~~~~vgR~~~~~~l~~~l~~-----------~~~~~~~i~I~G~~GiGKTtL~~~~~~~~~~~~~~~~~~~~~~~~~~~~   93 (216)
                      -....|-++..++|.+.+..           +-.-.+-|+++||+|+|||+||+++++.....|   +.+. ...+  ..
T Consensus       208 ~~DIgGl~~~k~~L~e~V~~pl~~pe~f~~~Gi~pprGILLyGPPGTGKTlLAkAiA~e~~~~f---i~vs-~s~L--~s  281 (467)
T 4b4t_H          208 YSDVGGCKDQIEKLREVVELPLLSPERFATLGIDPPKGILLYGPPGTGKTLCARAVANRTDATF---IRVI-GSEL--VQ  281 (467)
T ss_dssp             CSSCTTCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCSEEEECSCTTSSHHHHHHHHHHHHTCEE---EEEE-GGGG--CC
T ss_pred             HHHhccHHHHHHHHHHHHHHHhcCHHHHHHCCCCCCCceEeeCCCCCcHHHHHHHHHhccCCCe---EEEE-hHHh--hc
Confidence            45788999999988775431           223467899999999999999999999875432   1111 1111  00


Q ss_pred             CchHHHHHHHHHHHhhccccccchhhhHHHHHHHhCCceEEEEEeCCCCH----------------HHHHHhhcCCC--C
Q 039455           94 GLVPLQEQLLSEVLMERNLIIWDVHKGINLIRWRLCRKRVLVVLDDVDQL----------------EQLQALAGNHD--W  155 (216)
Q Consensus        94 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~llvlDd~~~~----------------~~~~~l~~~~~--~  155 (216)
                      .+..-...                 .....+...-...+++|+||+++..                ..+..++..+.  .
T Consensus       282 k~vGesek-----------------~ir~lF~~Ar~~aP~IIfiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~  344 (467)
T 4b4t_H          282 KYVGEGAR-----------------MVRELFEMARTKKACIIFFDEIDAVGGARFDDGAGGDNEVQRTMLELITQLDGFD  344 (467)
T ss_dssp             CSSSHHHH-----------------HHHHHHHHHHHTCSEEEEEECCTTTSBCCSSSSCGGGGHHHHHHHHHHHHHHSSC
T ss_pred             ccCCHHHH-----------------HHHHHHHHHHhcCCceEeecccccccccccCcCCCccHHHHHHHHHHHHHhhccC
Confidence            11111111                 1122233334467899999998643                01222222211  1


Q ss_pred             CCCCcEEEEEeCCchhhhc--c---CCcceEEecCCChHHHHHHHhhhhcCCC-CCchhHhhhcc
Q 039455          156 FGFGSRIIITTRDEHVLKG--H---GVTNIYKVRGLDYVEALQLFHLKVSKGK-QPTDDRVELSK  214 (216)
Q Consensus       156 ~~~~~~il~tsr~~~~~~~--~---~~~~~~~l~~l~~~~~~~ll~~~~~~~~-~~~~~~~~l~~  214 (216)
                      ...+..+|.||..+..+..  +   ..+..+.++..+.++..++|+.+...-. ..+-+++.|++
T Consensus       345 ~~~~ViVIaATNrpd~LDpALlRpGRFD~~I~i~lPd~~~R~~Ilk~~l~~~~l~~dvdl~~LA~  409 (467)
T 4b4t_H          345 PRGNIKVMFATNRPNTLDPALLRPGRIDRKVEFSLPDLEGRANIFRIHSKSMSVERGIRWELISR  409 (467)
T ss_dssp             CTTTEEEEEECSCTTSBCHHHHSTTTCCEEECCCCCCHHHHHHHHHHHHTTSCBCSSCCHHHHHH
T ss_pred             CCCcEEEEeCCCCcccCChhhhccccccEEEEeCCcCHHHHHHHHHHHhcCCCCCCCCCHHHHHH
Confidence            1234456667765543221  1   3578899999999999999987764433 22234555553

>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=99.11  E-value=9.5e-10  Score=90.26  Aligned_cols=171  Identities=15%  Similarity=0.182  Sum_probs=97.6

Q ss_pred             CCCcccccccchhHHHHHHHHHhc-----------CCCCeeEEEEEecCCCcHHHHHHHHHHHhcCCCCceEeecccccc
Q 039455           21 FPSAVDGLVGIASRMEKMNGYLEA-----------GLDDVRFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLANVREV   89 (216)
Q Consensus        21 ~~~~~~~~vgR~~~~~~l~~~l~~-----------~~~~~~~i~I~G~~GiGKTtL~~~~~~~~~~~~~~~~~~~~~~~~   89 (216)
                      +......+.|-++..++|...+..           +-...+.|.++||+|+|||.||+++++.....|   +.+. .+.+
T Consensus       176 p~~t~~digGl~~~k~~l~e~v~~pl~~pe~f~~~g~~~prGvLLyGPPGTGKTllAkAiA~e~~~~f---~~v~-~s~l  251 (434)
T 4b4t_M          176 PTETYSDVGGLDKQIEELVEAIVLPMKRADKFKDMGIRAPKGALMYGPPGTGKTLLARACAAQTNATF---LKLA-APQL  251 (434)
T ss_dssp             CSCCGGGSCSCHHHHHHHHHHTHHHHHCSHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHHHTCEE---EEEE-GGGG
T ss_pred             CCCChHhcCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeeEEECcCCCCHHHHHHHHHHHhCCCE---EEEe-hhhh
Confidence            334567889999999998775321           123457899999999999999999999875432   1111 1111


Q ss_pred             ccccCchHHHHHHHHHHHhhccccccchhhhHHHHHHHhCCceEEEEEeCCCCH------------H----HHHHhhcCC
Q 039455           90 SVTRGLVPLQEQLLSEVLMERNLIIWDVHKGINLIRWRLCRKRVLVVLDDVDQL------------E----QLQALAGNH  153 (216)
Q Consensus        90 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~llvlDd~~~~------------~----~~~~l~~~~  153 (216)
                        ...+..-....++                 ..+...-...+++|+||+++..            .    .+..++..+
T Consensus       252 --~~~~vGese~~ir-----------------~lF~~A~~~aP~IifiDEiDal~~~R~~~~~~~~~~~~~~~~~lL~~l  312 (434)
T 4b4t_M          252 --VQMYIGEGAKLVR-----------------DAFALAKEKAPTIIFIDELDAIGTKRFDSEKSGDREVQRTMLELLNQL  312 (434)
T ss_dssp             --CSSCSSHHHHHHH-----------------HHHHHHHHHCSEEEEEECTHHHHCCCSSGGGGTTHHHHHHHHHHHHHH
T ss_pred             --hhcccchHHHHHH-----------------HHHHHHHhcCCeEEeecchhhhhhccCCCCCCCchHHHHHHHHHHHHh
Confidence              0111111111111                 1222223346899999998533            0    122333222


Q ss_pred             CCC--CCCcEEEEEeCCchhhhc--c---CCcceEEecCCChHHHHHHHhhhhcCCC-CCchhHhhhcc
Q 039455          154 DWF--GFGSRIIITTRDEHVLKG--H---GVTNIYKVRGLDYVEALQLFHLKVSKGK-QPTDDRVELSK  214 (216)
Q Consensus       154 ~~~--~~~~~il~tsr~~~~~~~--~---~~~~~~~l~~l~~~~~~~ll~~~~~~~~-~~~~~~~~l~~  214 (216)
                      ...  ..+..||.||..++.+..  +   ..+..+.++..+.++..++|+.+...-. .++-++++|++
T Consensus       313 dg~~~~~~ViVIaaTNrp~~LD~AllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~~~~dvdl~~lA~  381 (434)
T 4b4t_M          313 DGFSSDDRVKVLAATNRVDVLDPALLRSGRLDRKIEFPLPSEDSRAQILQIHSRKMTTDDDINWQELAR  381 (434)
T ss_dssp             TTSCSSCSSEEEEECSSCCCCCTTTCSTTSEEEEEECCCCCHHHHHHHHHHHHHHSCBCSCCCHHHHHH
T ss_pred             hccCCCCCEEEEEeCCCchhcCHhHhcCCceeEEEEeCCcCHHHHHHHHHHHhcCCCCCCcCCHHHHHH
Confidence            111  234556667776544322  1   2467899999999999999986653332 22234555553

>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}

Probab=99.10  E-value=1.1e-09  Score=90.67  Aligned_cols=149  Identities=19%  Similarity=0.263  Sum_probs=87.3

Q ss_pred             CCcccccccchhHH---HHHHHHHhcCCCCeeEEEEEecCCCcHHHHHHHHHHHhcCCCCceEeeccccccccccCchHH
Q 039455           22 PSAVDGLVGIASRM---EKMNGYLEAGLDDVRFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLANVREVSVTRGLVPL   98 (216)
Q Consensus        22 ~~~~~~~vgR~~~~---~~l~~~l~~~~~~~~~i~I~G~~GiGKTtL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   98 (216)
                      |..-.+++|.+..+   +.|...+..+.  ...++|+||+|+||||||+.+++.....|.  . +....     ... ..
T Consensus        22 P~~l~~ivGq~~~~~~~~~L~~~i~~~~--~~~vLL~GppGtGKTtlAr~ia~~~~~~f~--~-l~a~~-----~~~-~~   90 (447)
T 3pvs_A           22 PENLAQYIGQQHLLAAGKPLPRAIEAGH--LHSMILWGPPGTGKTTLAEVIARYANADVE--R-ISAVT-----SGV-KE   90 (447)
T ss_dssp             CCSTTTCCSCHHHHSTTSHHHHHHHHTC--CCEEEEECSTTSSHHHHHHHHHHHTTCEEE--E-EETTT-----CCH-HH
T ss_pred             CCCHHHhCCcHHHHhchHHHHHHHHcCC--CcEEEEECCCCCcHHHHHHHHHHHhCCCeE--E-EEecc-----CCH-HH
Confidence            34556799999998   77888777642  378999999999999999999987643321  1 11000     111 11


Q ss_pred             HHHHHHHHHhhccccccchhhhHHHHHHHhCCceEEEEEeCCCCHH--HHHHhhcCCCCCCCCcEEEEEe-CCchh--hh
Q 039455           99 QEQLLSEVLMERNLIIWDVHKGINLIRWRLCRKRVLVVLDDVDQLE--QLQALAGNHDWFGFGSRIIITT-RDEHV--LK  173 (216)
Q Consensus        99 ~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~llvlDd~~~~~--~~~~l~~~~~~~~~~~~il~ts-r~~~~--~~  173 (216)
                      ...++..                 ........++.+|+|||++...  ....++..+.  .....+|.+| .+...  ..
T Consensus        91 ir~~~~~-----------------a~~~~~~~~~~iLfIDEI~~l~~~~q~~LL~~le--~~~v~lI~att~n~~~~l~~  151 (447)
T 3pvs_A           91 IREAIER-----------------ARQNRNAGRRTILFVDEVHRFNKSQQDAFLPHIE--DGTITFIGATTENPSFELNS  151 (447)
T ss_dssp             HHHHHHH-----------------HHHHHHTTCCEEEEEETTTCC------CCHHHHH--TTSCEEEEEESSCGGGSSCH
T ss_pred             HHHHHHH-----------------HHHhhhcCCCcEEEEeChhhhCHHHHHHHHHHHh--cCceEEEecCCCCcccccCH
Confidence            1111111                 0011124567899999997652  2233333222  1234455544 33321  11


Q ss_pred             -ccCCcceEEecCCChHHHHHHHhhhhc
Q 039455          174 -GHGVTNIYKVRGLDYVEALQLFHLKVS  200 (216)
Q Consensus       174 -~~~~~~~~~l~~l~~~~~~~ll~~~~~  200 (216)
                       .......+.+++++.++..+++.+...
T Consensus       152 aL~sR~~v~~l~~l~~edi~~il~~~l~  179 (447)
T 3pvs_A          152 ALLSRARVYLLKSLSTEDIEQVLTQAME  179 (447)
T ss_dssp             HHHTTEEEEECCCCCHHHHHHHHHHHHH
T ss_pred             HHhCceeEEeeCCcCHHHHHHHHHHHHH
Confidence             122346899999999999999987764

>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*

Probab=99.10  E-value=6.7e-10  Score=88.09  Aligned_cols=161  Identities=17%  Similarity=0.157  Sum_probs=92.4

Q ss_pred             CCcccccccchhHHHHHHHHHhcC---CCCeeEEEEEecCCCcHHHHHHHHHHHhcCCCCceEeeccccccccccCchHH
Q 039455           22 PSAVDGLVGIASRMEKMNGYLEAG---LDDVRFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLANVREVSVTRGLVPL   98 (216)
Q Consensus        22 ~~~~~~~vgR~~~~~~l~~~l~~~---~~~~~~i~I~G~~GiGKTtL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   98 (216)
                      |.....|+|++..++.+..++...   ......+.|+|++|+|||++|+.+++.....   ..++. ....   ..    
T Consensus         8 p~~~~~~ig~~~~~~~l~~~l~~~~~~~~~~~~vll~G~~GtGKT~la~~i~~~~~~~---~~~~~-~~~~---~~----   76 (324)
T 1hqc_A            8 PKTLDEYIGQERLKQKLRVYLEAAKARKEPLEHLLLFGPPGLGKTTLAHVIAHELGVN---LRVTS-GPAI---EK----   76 (324)
T ss_dssp             CCSTTTCCSCHHHHHHHHHHHHHHHHHCSCCCCCEEECCTTCCCHHHHHHHHHHHTCC---EEEEC-TTTC---CS----
T ss_pred             cccHHHhhCHHHHHHHHHHHHHHHHccCCCCCcEEEECCCCCCHHHHHHHHHHHhCCC---EEEEe-cccc---CC----
Confidence            345577999999999998877521   2234689999999999999999999876422   22332 1110   00    


Q ss_pred             HHHHHHHHHhhccccccchhhhHHHHHHHhCCceEEEEEeCCCCHH--HHHHhhcCCCCC------------------CC
Q 039455           99 QEQLLSEVLMERNLIIWDVHKGINLIRWRLCRKRVLVVLDDVDQLE--QLQALAGNHDWF------------------GF  158 (216)
Q Consensus        99 ~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~llvlDd~~~~~--~~~~l~~~~~~~------------------~~  158 (216)
                      ...+...                  +... ..++.+|+|||++...  ....+...+...                  ..
T Consensus        77 ~~~l~~~------------------l~~~-~~~~~~l~lDEi~~l~~~~~~~L~~~l~~~~~~~v~~~~~~~~~~~~~~~  137 (324)
T 1hqc_A           77 PGDLAAI------------------LANS-LEEGDILFIDEIHRLSRQAEEHLYPAMEDFVMDIVIGQGPAARTIRLELP  137 (324)
T ss_dssp             HHHHHHH------------------HTTT-CCTTCEEEETTTTSCCHHHHHHHHHHHHHSEEEECCSSSSSCCCEEEECC
T ss_pred             hHHHHHH------------------HHHh-ccCCCEEEEECCcccccchHHHHHHHHHhhhhHHhccccccccccccCCC
Confidence            1111111                  1110 1245699999997642  222222111000                  02


Q ss_pred             CcEEEEEeCCch-hhhcc--CCcceEEecCCChHHHHHHHhhhhcCCC--CCchhHhhh
Q 039455          159 GSRIIITTRDEH-VLKGH--GVTNIYKVRGLDYVEALQLFHLKVSKGK--QPTDDRVEL  212 (216)
Q Consensus       159 ~~~il~tsr~~~-~~~~~--~~~~~~~l~~l~~~~~~~ll~~~~~~~~--~~~~~~~~l  212 (216)
                      ...++.+|.... +...+  .....+.+.+++.++..+++...+...+  .+++.++.|
T Consensus       138 ~~~~i~~t~~~~~~~~~l~~R~~~~i~l~~~~~~e~~~~l~~~~~~~~~~~~~~~~~~l  196 (324)
T 1hqc_A          138 RFTLIGATTRPGLITAPLLSRFGIVEHLEYYTPEELAQGVMRDARLLGVRITEEAALEI  196 (324)
T ss_dssp             CCEEEEEESCCSSCSCSTTTTCSCEEECCCCCHHHHHHHHHHHHHTTTCCCCHHHHHHH
T ss_pred             CEEEEEeCCCcccCCHHHHhcccEEEecCCCCHHHHHHHHHHHHHhcCCCCCHHHHHHH
Confidence            355666666442 21111  1346899999999999999988764333  333444444

>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*

Probab=99.10  E-value=1.5e-09  Score=84.09  Aligned_cols=152  Identities=17%  Similarity=0.155  Sum_probs=84.8

Q ss_pred             ccccccchhHHHHHHHH-------Hhc-CCCCeeEEEEEecCCCcHHHHHHHHHHHhcCCCCceEeeccccccccccCch
Q 039455           25 VDGLVGIASRMEKMNGY-------LEA-GLDDVRFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLANVREVSVTRGLV   96 (216)
Q Consensus        25 ~~~~vgR~~~~~~l~~~-------l~~-~~~~~~~i~I~G~~GiGKTtL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   96 (216)
                      ...++|.+..++.+...       +.. .......+.|+||+|+|||+||+.++....  .+.+.+.. ...   .....
T Consensus        32 ~~~~i~~~~~~~~i~~~~~~l~~~l~~~~~~~~~~vLl~G~~GtGKT~la~~ia~~~~--~~~~~i~~-~~~---~~g~~  105 (272)
T 1d2n_A           32 MNGIIKWGDPVTRVLDDGELLVQQTKNSDRTPLVSVLLEGPPHSGKTALAAKIAEESN--FPFIKICS-PDK---MIGFS  105 (272)
T ss_dssp             TTCCCCCSHHHHHHHHHHHHHHHHHHHCSSCSEEEEEEECSTTSSHHHHHHHHHHHHT--CSEEEEEC-GGG---CTTCC
T ss_pred             hcCCCCccHHHHHHHHHHHHHHHHHhccCCCCCeEEEEECCCCCcHHHHHHHHHHHhC--CCEEEEeC-HHH---hcCCc
Confidence            34688998887776652       221 234568999999999999999999998753  23222211 110   00000


Q ss_pred             HHHHHHHHHHHhhccccccchhhhHHHHHHHhCCceEEEEEeCCCCH---------------HHHHHhhcCCCCCCCCcE
Q 039455           97 PLQEQLLSEVLMERNLIIWDVHKGINLIRWRLCRKRVLVVLDDVDQL---------------EQLQALAGNHDWFGFGSR  161 (216)
Q Consensus        97 ~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~llvlDd~~~~---------------~~~~~l~~~~~~~~~~~~  161 (216)
                      .  ..              ........+......++.+|+|||++.+               +.+..++...........
T Consensus       106 ~--~~--------------~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~l~~L~~~~~~~~~~~~~~~  169 (272)
T 1d2n_A          106 E--TA--------------KCQAMKKIFDDAYKSQLSCVVVDDIERLLDYVPIGPRFSNLVLQALLVLLKKAPPQGRKLL  169 (272)
T ss_dssp             H--HH--------------HHHHHHHHHHHHHTSSEEEEEECCHHHHTTCBTTTTBCCHHHHHHHHHHTTCCCSTTCEEE
T ss_pred             h--HH--------------HHHHHHHHHHHHHhcCCcEEEEEChhhhhccCCCChhHHHHHHHHHHHHhcCccCCCCCEE
Confidence            0  00              0011122233334466889999998643               222233322221123345


Q ss_pred             EEEEeCCchhhhc---cC-CcceEEecCCCh-HHHHHHHhhh
Q 039455          162 IIITTRDEHVLKG---HG-VTNIYKVRGLDY-VEALQLFHLK  198 (216)
Q Consensus       162 il~tsr~~~~~~~---~~-~~~~~~l~~l~~-~~~~~ll~~~  198 (216)
                      ||.||..+.....   .. ....+.+++++. ++...++...
T Consensus       170 ii~ttn~~~~l~~~~l~~rf~~~i~~p~l~~r~~i~~i~~~~  211 (272)
T 1d2n_A          170 IIGTTSRKDVLQEMEMLNAFSTTIHVPNIATGEQLLEALELL  211 (272)
T ss_dssp             EEEEESCHHHHHHTTCTTTSSEEEECCCEEEHHHHHHHHHHH
T ss_pred             EEEecCChhhcchhhhhcccceEEcCCCccHHHHHHHHHHhc
Confidence            6777776644332   11 256789999988 6666666653

>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}

Probab=99.09  E-value=8.5e-10  Score=80.14  Aligned_cols=50  Identities=18%  Similarity=0.231  Sum_probs=41.9

Q ss_pred             cccccccchhHHHHHHHHHhcCCCCeeEEEEEecCCCcHHHHHHHHHHHhcC
Q 039455           24 AVDGLVGIASRMEKMNGYLEAGLDDVRFIGICGMGGIGKTTLAKVLYNTLKD   75 (216)
Q Consensus        24 ~~~~~vgR~~~~~~l~~~l~~~~~~~~~i~I~G~~GiGKTtL~~~~~~~~~~   75 (216)
                      ....++||+.+++.+...+...  ....+.|+|++|+|||+|++.++..+..
T Consensus        20 ~~~~~~g~~~~~~~l~~~l~~~--~~~~vll~G~~G~GKT~la~~~~~~~~~   69 (187)
T 2p65_A           20 KLDPVIGRDTEIRRAIQILSRR--TKNNPILLGDPGVGKTAIVEGLAIKIVQ   69 (187)
T ss_dssp             CSCCCCSCHHHHHHHHHHHTSS--SSCEEEEESCGGGCHHHHHHHHHHHHHT
T ss_pred             ccchhhcchHHHHHHHHHHhCC--CCCceEEECCCCCCHHHHHHHHHHHHHh
Confidence            3456999999999999988753  3467899999999999999999987644

>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}

Probab=99.08  E-value=1.4e-09  Score=85.24  Aligned_cols=169  Identities=14%  Similarity=0.061  Sum_probs=92.5

Q ss_pred             CCcccccccchhHHHHHHHHHhcC----------CCCeeEEEEEecCCCcHHHHHHHHHHHhcCCCCceEeecccccccc
Q 039455           22 PSAVDGLVGIASRMEKMNGYLEAG----------LDDVRFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLANVREVSV   91 (216)
Q Consensus        22 ~~~~~~~vgR~~~~~~l~~~l~~~----------~~~~~~i~I~G~~GiGKTtL~~~~~~~~~~~~~~~~~~~~~~~~~~   91 (216)
                      +..-..++|.+..++.+...+...          ......+.|+||+|+|||++|+.++......|   ..+. ......
T Consensus        17 ~~~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~la~~la~~~~~~~---~~i~-~~~l~~   92 (297)
T 3b9p_A           17 KVEWTDIAGQDVAKQALQEMVILPSVRPELFTGLRAPAKGLLLFGPPGNGKTLLARAVATECSATF---LNIS-AASLTS   92 (297)
T ss_dssp             CCCGGGSCCCHHHHHHHHHHTHHHHHCGGGSCGGGCCCSEEEEESSSSSCHHHHHHHHHHHTTCEE---EEEE-STTTSS
T ss_pred             CCCHHHhCChHHHHHHHHHHHHhhhhCHHHHhcCCCCCCeEEEECcCCCCHHHHHHHHHHHhCCCe---EEee-HHHHhh
Confidence            445678999999999998876421          12346899999999999999999998764221   1222 111100


Q ss_pred             ccCchHHHHHHHHHHHhhccccccchhhhHHHHHHHhCCceEEEEEeCCCCH-------------HHHHHhh---cCCCC
Q 039455           92 TRGLVPLQEQLLSEVLMERNLIIWDVHKGINLIRWRLCRKRVLVVLDDVDQL-------------EQLQALA---GNHDW  155 (216)
Q Consensus        92 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~llvlDd~~~~-------------~~~~~l~---~~~~~  155 (216)
                      .. ..                  .........+......++.+|+|||++..             .....++   ..+..
T Consensus        93 ~~-~~------------------~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~  153 (297)
T 3b9p_A           93 KY-VG------------------DGEKLVRALFAVARHMQPSIIFIDEVDSLLSERSSSEHEASRRLKTEFLVEFDGLPG  153 (297)
T ss_dssp             SS-CS------------------CHHHHHHHHHHHHHHTCSEEEEEETGGGTSBCC-----CCSHHHHHHHHHHHHHCC-
T ss_pred             cc-cc------------------hHHHHHHHHHHHHHHcCCcEEEeccHHHhccccccCcchHHHHHHHHHHHHHhcccc
Confidence            00 00                  00011111222233356789999999643             1111222   11111


Q ss_pred             C--CCCcEEEEEeCCchhhhc---cCCcceEEecCCChHHHHHHHhhhhcCCC--CCchhHhhhc
Q 039455          156 F--GFGSRIIITTRDEHVLKG---HGVTNIYKVRGLDYVEALQLFHLKVSKGK--QPTDDRVELS  213 (216)
Q Consensus       156 ~--~~~~~il~tsr~~~~~~~---~~~~~~~~l~~l~~~~~~~ll~~~~~~~~--~~~~~~~~l~  213 (216)
                      .  +.+..+|.||..+.....   ......+.+++.+.++..+++.......+  .+++.++.|+
T Consensus       154 ~~~~~~v~vi~~tn~~~~l~~~l~~R~~~~i~~~~p~~~~r~~il~~~~~~~~~~~~~~~~~~la  218 (297)
T 3b9p_A          154 NPDGDRIVVLAATNRPQELDEAALRRFTKRVYVSLPDEQTRELLLNRLLQKQGSPLDTEALRRLA  218 (297)
T ss_dssp             -----CEEEEEEESCGGGBCHHHHHHCCEEEECCCCCHHHHHHHHHHHHGGGSCCSCHHHHHHHH
T ss_pred             cCCCCcEEEEeecCChhhCCHHHHhhCCeEEEeCCcCHHHHHHHHHHHHHhcCCCCCHHHHHHHH
Confidence            1  134556777776432111   02456788888899888888877653322  2334455444

>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*

Probab=99.08  E-value=1.3e-09  Score=86.55  Aligned_cols=145  Identities=17%  Similarity=0.182  Sum_probs=85.0

Q ss_pred             CcccccccchhHHHHHHHHHhcCCCCeeEEEEEecCCCcHHHHHHHHHHHhcCCCCceEeeccccccccccCchHHHHHH
Q 039455           23 SAVDGLVGIASRMEKMNGYLEAGLDDVRFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLANVREVSVTRGLVPLQEQL  102 (216)
Q Consensus        23 ~~~~~~vgR~~~~~~l~~~l~~~~~~~~~i~I~G~~GiGKTtL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  102 (216)
                      ..-++++|++..++.+..++..+ .....+.++||+|+|||++++.+++.+..   .+..+. ...    .. .......
T Consensus        23 ~~~~~ivg~~~~~~~l~~~l~~~-~~~~~~L~~G~~G~GKT~la~~la~~l~~---~~~~i~-~~~----~~-~~~i~~~   92 (324)
T 3u61_B           23 STIDECILPAFDKETFKSITSKG-KIPHIILHSPSPGTGKTTVAKALCHDVNA---DMMFVN-GSD----CK-IDFVRGP   92 (324)
T ss_dssp             CSTTTSCCCHHHHHHHHHHHHTT-CCCSEEEECSSTTSSHHHHHHHHHHHTTE---EEEEEE-TTT----CC-HHHHHTH
T ss_pred             CCHHHHhCcHHHHHHHHHHHHcC-CCCeEEEeeCcCCCCHHHHHHHHHHHhCC---CEEEEc-ccc----cC-HHHHHHH
Confidence            44567999999999999998854 23467888899999999999999987631   222222 111    11 1111111


Q ss_pred             HHHHHhhccccccchhhhHHHHHHHhCCceEEEEEeCCCCHH---HHHHhhcCCCCCCCCcEEEEEeCCchh-hhcc-CC
Q 039455          103 LSEVLMERNLIIWDVHKGINLIRWRLCRKRVLVVLDDVDQLE---QLQALAGNHDWFGFGSRIIITTRDEHV-LKGH-GV  177 (216)
Q Consensus       103 ~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~llvlDd~~~~~---~~~~l~~~~~~~~~~~~il~tsr~~~~-~~~~-~~  177 (216)
                      +.......                ...+++.+|+|||++...   ....+...+.....++.+|+||....- ...+ ..
T Consensus        93 ~~~~~~~~----------------~~~~~~~vliiDEi~~l~~~~~~~~L~~~le~~~~~~~iI~~~n~~~~l~~~l~sR  156 (324)
T 3u61_B           93 LTNFASAA----------------SFDGRQKVIVIDEFDRSGLAESQRHLRSFMEAYSSNCSIIITANNIDGIIKPLQSR  156 (324)
T ss_dssp             HHHHHHBC----------------CCSSCEEEEEEESCCCGGGHHHHHHHHHHHHHHGGGCEEEEEESSGGGSCTTHHHH
T ss_pred             HHHHHhhc----------------ccCCCCeEEEEECCcccCcHHHHHHHHHHHHhCCCCcEEEEEeCCccccCHHHHhh
Confidence            11111000                012367899999998764   233333222211245678888876532 1111 12


Q ss_pred             cceEEecCCChHHHHH
Q 039455          178 TNIYKVRGLDYVEALQ  193 (216)
Q Consensus       178 ~~~~~l~~l~~~~~~~  193 (216)
                      ...+++++++.++..+
T Consensus       157 ~~~i~~~~~~~~e~~~  172 (324)
T 3u61_B          157 CRVITFGQPTDEDKIE  172 (324)
T ss_dssp             SEEEECCCCCHHHHHH
T ss_pred             CcEEEeCCCCHHHHHH
Confidence            3579999999887433

>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}

Probab=99.08  E-value=3.1e-10  Score=79.79  Aligned_cols=47  Identities=19%  Similarity=0.178  Sum_probs=37.8

Q ss_pred             ccccchhHHHHHHHHHhcCCCCeeEEEEEecCCCcHHHHHHHHHHHh
Q 039455           27 GLVGIASRMEKMNGYLEAGLDDVRFIGICGMGGIGKTTLAKVLYNTL   73 (216)
Q Consensus        27 ~~vgR~~~~~~l~~~l~~~~~~~~~i~I~G~~GiGKTtL~~~~~~~~   73 (216)
                      .++|++..++.+.+.+..-......+.|+|++|+|||++|+.+++..
T Consensus         2 ~iiG~s~~~~~~~~~~~~~a~~~~~vll~G~~GtGKt~lA~~i~~~~   48 (145)
T 3n70_A            2 ELIGRSEWINQYRRRLQQLSETDIAVWLYGAPGTGRMTGARYLHQFG   48 (145)
T ss_dssp             --CCSSHHHHHHHHHHHHHTTCCSCEEEESSTTSSHHHHHHHHHHSS
T ss_pred             CceeCCHHHHHHHHHHHHHhCCCCCEEEECCCCCCHHHHHHHHHHhC
Confidence            58999999999998776433344678999999999999999998754

>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=99.08  E-value=2.7e-09  Score=86.93  Aligned_cols=169  Identities=17%  Similarity=0.195  Sum_probs=97.7

Q ss_pred             CcccccccchhHHHHHHHHHhc-----------CCCCeeEEEEEecCCCcHHHHHHHHHHHhcCCCCceEeecccccccc
Q 039455           23 SAVDGLVGIASRMEKMNGYLEA-----------GLDDVRFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLANVREVSV   91 (216)
Q Consensus        23 ~~~~~~vgR~~~~~~l~~~l~~-----------~~~~~~~i~I~G~~GiGKTtL~~~~~~~~~~~~~~~~~~~~~~~~~~   91 (216)
                      .....+-|-++..++|.+.+..           +-.-.+-|.++||+|+|||.||+++++.....|-   .+. .+.+  
T Consensus       179 v~~~DIgGld~~k~~L~e~v~~Pl~~pe~f~~~Gi~~prGvLLyGPPGTGKTlLAkAiA~e~~~~fi---~v~-~s~l--  252 (437)
T 4b4t_I          179 ESYSDIGGLESQIQEIKESVELPLTHPELYEEMGIKPPKGVILYGAPGTGKTLLAKAVANQTSATFL---RIV-GSEL--  252 (437)
T ss_dssp             CCGGGTCSCHHHHHHHHHHHHHHHHCCHHHHHHTCCCCSEEEEESSTTTTHHHHHHHHHHHHTCEEE---EEE-SGGG--
T ss_pred             CcceecCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCCCceECCCCchHHHHHHHHHHHhCCCEE---EEE-HHHh--
Confidence            3456788999999988775531           1233578999999999999999999998754321   111 1111  


Q ss_pred             ccCchHHHHHHHHHHHhhccccccchhhhHHHHHHHhCCceEEEEEeCCCCH----------------HHHHHhhcCCC-
Q 039455           92 TRGLVPLQEQLLSEVLMERNLIIWDVHKGINLIRWRLCRKRVLVVLDDVDQL----------------EQLQALAGNHD-  154 (216)
Q Consensus        92 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~llvlDd~~~~----------------~~~~~l~~~~~-  154 (216)
                      ...+..-....+                 ...+..+-...+++|+||+++..                ..+..++..+. 
T Consensus       253 ~sk~vGesek~i-----------------r~lF~~Ar~~aP~IIfiDEiDai~~~R~~~~~~~~~~~~~~l~~LL~~lDg  315 (437)
T 4b4t_I          253 IQKYLGDGPRLC-----------------RQIFKVAGENAPSIVFIDEIDAIGTKRYDSNSGGEREIQRTMLELLNQLDG  315 (437)
T ss_dssp             CCSSSSHHHHHH-----------------HHHHHHHHHTCSEEEEEEEESSSSCCCSCSSCSSCCHHHHHHHHHHHHHHH
T ss_pred             hhccCchHHHHH-----------------HHHHHHHHhcCCcEEEEehhhhhcccCCCCCCCccHHHHHHHHHHHHHhhC
Confidence            011111111111                 12223333457899999988633                11222322211 


Q ss_pred             -CCCCCcEEEEEeCCchhhhc--c---CCcceEEecCCChHHHHHHHhhhhcCCC-CCchhHhhhcc
Q 039455          155 -WFGFGSRIIITTRDEHVLKG--H---GVTNIYKVRGLDYVEALQLFHLKVSKGK-QPTDDRVELSK  214 (216)
Q Consensus       155 -~~~~~~~il~tsr~~~~~~~--~---~~~~~~~l~~l~~~~~~~ll~~~~~~~~-~~~~~~~~l~~  214 (216)
                       ....+..+|.||..++.++.  +   ..+..+.++..+.++..++|+.+...-. ..+-+++.|++
T Consensus       316 ~~~~~~ViVIaATNrpd~LDpALlRpGRfD~~I~v~lPd~~~R~~Il~~~l~~~~l~~dvdl~~LA~  382 (437)
T 4b4t_I          316 FDDRGDVKVIMATNKIETLDPALIRPGRIDRKILFENPDLSTKKKILGIHTSKMNLSEDVNLETLVT  382 (437)
T ss_dssp             CCCSSSEEEEEEESCSTTCCTTSSCTTTEEEEECCCCCCHHHHHHHHHHHHTTSCBCSCCCHHHHHH
T ss_pred             cCCCCCEEEEEeCCChhhcCHHHhcCCceeEEEEcCCcCHHHHHHHHHHHhcCCCCCCcCCHHHHHH
Confidence             11234566777776654332  1   2456789999999999999987765443 22334666654

>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*

Probab=99.08  E-value=7.9e-10  Score=92.51  Aligned_cols=166  Identities=14%  Similarity=0.095  Sum_probs=95.2

Q ss_pred             ccccccchhHHHHHHHHHhcC-----------CCCeeEEEEEecCCCcHHHHHHHHHHHhcCCCCceEeecccccccccc
Q 039455           25 VDGLVGIASRMEKMNGYLEAG-----------LDDVRFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLANVREVSVTR   93 (216)
Q Consensus        25 ~~~~vgR~~~~~~l~~~l~~~-----------~~~~~~i~I~G~~GiGKTtL~~~~~~~~~~~~~~~~~~~~~~~~~~~~   93 (216)
                      ...++|.+..++.|..++...           ......++|+|++|+|||++|+.+++.....   .+.+. +....  .
T Consensus       203 ~~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~lAraia~~~~~~---fv~vn-~~~l~--~  276 (489)
T 3hu3_A          203 YDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAF---FFLIN-GPEIM--S  276 (489)
T ss_dssp             GGGCCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCEEEEECSTTSSHHHHHHHHHHHCSSE---EEEEE-HHHHH--T
T ss_pred             HHHcCCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCcEEEECcCCCCHHHHHHHHHHHhCCC---EEEEE-chHhh--h
Confidence            456899999999998876532           2345679999999999999999998876321   12222 11110  0


Q ss_pred             CchHHHHHHHHHHHhhccccccchhhhHHHHHHHhCCceEEEEEeCCCCH-------------HHHHHhhcCCC--CCCC
Q 039455           94 GLVPLQEQLLSEVLMERNLIIWDVHKGINLIRWRLCRKRVLVVLDDVDQL-------------EQLQALAGNHD--WFGF  158 (216)
Q Consensus        94 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~llvlDd~~~~-------------~~~~~l~~~~~--~~~~  158 (216)
                      .+.                 ..........+.....+++.+|+|||++.+             .....++..+.  ....
T Consensus       277 ~~~-----------------g~~~~~~~~~f~~A~~~~p~iLfLDEId~l~~~~~~~~~~~~~~~~~~LL~~ld~~~~~~  339 (489)
T 3hu3_A          277 KLA-----------------GESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRA  339 (489)
T ss_dssp             SCT-----------------THHHHHHHHHHHHHHHTCSEEEEEESHHHHCBCTTSCCCHHHHHHHHHHHHHHHHSCTTS
T ss_pred             hhc-----------------chhHHHHHHHHHHHHhcCCcEEEecchhhhccccccccchHHHHHHHHHHHHhhccccCC
Confidence            000                 001111223344444566789999998422             11122222111  1123


Q ss_pred             CcEEEEEeCCchh-----hhccCCcceEEecCCChHHHHHHHhhhhcCCC-CCchhHhhhc
Q 039455          159 GSRIIITTRDEHV-----LKGHGVTNIYKVRGLDYVEALQLFHLKVSKGK-QPTDDRVELS  213 (216)
Q Consensus       159 ~~~il~tsr~~~~-----~~~~~~~~~~~l~~l~~~~~~~ll~~~~~~~~-~~~~~~~~l~  213 (216)
                      +..+|.||+.+..     .+.......+.+.+.+.++..++|+.+..... ..+..+.+++
T Consensus       340 ~v~vIaaTn~~~~Ld~al~r~gRf~~~i~i~~P~~~eR~~IL~~~~~~~~l~~~~~l~~la  400 (489)
T 3hu3_A          340 HVIVMAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHTKNMKLADDVDLEQVA  400 (489)
T ss_dssp             CEEEEEEESCGGGBCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHTTTSCBCTTCCHHHHH
T ss_pred             ceEEEEecCCccccCHHHhCCCcCceEEEeCCCCHHHHHHHHHHHHhcCCCcchhhHHHHH
Confidence            4556667765532     11112456799999999999999998764433 2222344444

>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=99.07  E-value=1.4e-09  Score=87.15  Aligned_cols=180  Identities=13%  Similarity=0.171  Sum_probs=96.5

Q ss_pred             CCcccccccchhHHHHHHHHHhcCCCCeeEEEEEecCCCcHHHHHHHHHHHhcCC--CC-ceEeeccccccccccCchHH
Q 039455           22 PSAVDGLVGIASRMEKMNGYLEAGLDDVRFIGICGMGGIGKTTLAKVLYNTLKDQ--FE-ASSFLANVREVSVTRGLVPL   98 (216)
Q Consensus        22 ~~~~~~~vgR~~~~~~l~~~l~~~~~~~~~i~I~G~~GiGKTtL~~~~~~~~~~~--~~-~~~~~~~~~~~~~~~~~~~~   98 (216)
                      |.....++|++..++.+..++..+.  .+.+.|+||+|+||||+++.++..+...  +. ....+. ...   .... ..
T Consensus        33 p~~~~~i~g~~~~~~~l~~~l~~~~--~~~~ll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~-~~~---~~~~-~~  105 (353)
T 1sxj_D           33 PKNLDEVTAQDHAVTVLKKTLKSAN--LPHMLFYGPPGTGKTSTILALTKELYGPDLMKSRILELN-ASD---ERGI-SI  105 (353)
T ss_dssp             CSSTTTCCSCCTTHHHHHHHTTCTT--CCCEEEECSTTSSHHHHHHHHHHHHHHHHHHTTSEEEEC-SSS---CCCH-HH
T ss_pred             CCCHHHhhCCHHHHHHHHHHHhcCC--CCEEEEECCCCCCHHHHHHHHHHHhCCCcccccceEEEc-ccc---ccch-HH
Confidence            3445679999999999999887542  2348999999999999999999875321  11 122222 111   0111 11


Q ss_pred             HHHHHHHHHhhccccccchhhhHHHHHHHhCCceEEEEEeCCCCH--HHHHHhhcCCCCCCCCcEEEEEeCCch-hhhcc
Q 039455           99 QEQLLSEVLMERNLIIWDVHKGINLIRWRLCRKRVLVVLDDVDQL--EQLQALAGNHDWFGFGSRIIITTRDEH-VLKGH  175 (216)
Q Consensus        99 ~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~llvlDd~~~~--~~~~~l~~~~~~~~~~~~il~tsr~~~-~~~~~  175 (216)
                      .......+........   ...  .....-..+..+|++|+++..  +....+...+........+++++.... +...+
T Consensus       106 ~~~~~~~~~~~~~~~~---~~~--~~~~~~~~~~~vliiDE~~~l~~~~~~~Ll~~le~~~~~~~~il~~~~~~~l~~~l  180 (353)
T 1sxj_D          106 VREKVKNFARLTVSKP---SKH--DLENYPCPPYKIIILDEADSMTADAQSALRRTMETYSGVTRFCLICNYVTRIIDPL  180 (353)
T ss_dssp             HTTHHHHHHHSCCCCC---CTT--HHHHSCCCSCEEEEETTGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHH
T ss_pred             HHHHHHHHhhhccccc---chh--hcccCCCCCceEEEEECCCccCHHHHHHHHHHHHhcCCCceEEEEeCchhhCcchh
Confidence            1111111111100000   000  000111234579999999754  222333322221134566777775442 21111


Q ss_pred             -CCcceEEecCCChHHHHHHHhhhhcCCC--CCchhHhhhc
Q 039455          176 -GVTNIYKVRGLDYVEALQLFHLKVSKGK--QPTDDRVELS  213 (216)
Q Consensus       176 -~~~~~~~l~~l~~~~~~~ll~~~~~~~~--~~~~~~~~l~  213 (216)
                       .....+.++|++.++..+++...+...+  .+++.++.|+
T Consensus       181 ~sR~~~i~~~~~~~~~~~~~l~~~~~~~~~~i~~~~l~~l~  221 (353)
T 1sxj_D          181 ASQCSKFRFKALDASNAIDRLRFISEQENVKCDDGVLERIL  221 (353)
T ss_dssp             HHHSEEEECCCCCHHHHHHHHHHHHHTTTCCCCHHHHHHHH
T ss_pred             hccCceEEeCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHH
Confidence             1235899999999999999988664333  3444555444

>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}

Probab=99.07  E-value=9.2e-10  Score=87.94  Aligned_cols=149  Identities=18%  Similarity=0.209  Sum_probs=88.3

Q ss_pred             CCcccccccchhHHHHHHHHHhcC---CCCeeEEEEEecCCCcHHHHHHHHHHHhcCCCCceEeeccccccccccCchHH
Q 039455           22 PSAVDGLVGIASRMEKMNGYLEAG---LDDVRFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLANVREVSVTRGLVPL   98 (216)
Q Consensus        22 ~~~~~~~vgR~~~~~~l~~~l~~~---~~~~~~i~I~G~~GiGKTtL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   98 (216)
                      |.....++|++..++.+..++...   ......+.|+|++|+|||+||+.+++.....|  + .+. ....   ...   
T Consensus        25 p~~~~~iiG~~~~~~~l~~~l~~~~~~~~~~~~vll~G~~GtGKT~la~~ia~~~~~~~--~-~~~-~~~~---~~~---   94 (338)
T 3pfi_A           25 PSNFDGYIGQESIKKNLNVFIAAAKKRNECLDHILFSGPAGLGKTTLANIISYEMSANI--K-TTA-APMI---EKS---   94 (338)
T ss_dssp             CCSGGGCCSCHHHHHHHHHHHHHHHHTTSCCCCEEEECSTTSSHHHHHHHHHHHTTCCE--E-EEE-GGGC---CSH---
T ss_pred             CCCHHHhCChHHHHHHHHHHHHHHHhcCCCCCeEEEECcCCCCHHHHHHHHHHHhCCCe--E-Eec-chhc---cch---
Confidence            445678999999999999887642   33456799999999999999999988764332  1 111 1110   000   


Q ss_pred             HHHHHHHHHhhccccccchhhhHHHHHHHhCCceEEEEEeCCCCH--HHHHHhh---cCCC---------------CCCC
Q 039455           99 QEQLLSEVLMERNLIIWDVHKGINLIRWRLCRKRVLVVLDDVDQL--EQLQALA---GNHD---------------WFGF  158 (216)
Q Consensus        99 ~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~llvlDd~~~~--~~~~~l~---~~~~---------------~~~~  158 (216)
                       ..+                  ...+..  ..+..+|+|||++..  +....++   ....               ...+
T Consensus        95 -~~~------------------~~~~~~--~~~~~vl~lDEi~~l~~~~~~~Ll~~l~~~~~~~~~~~~~~~~~~~~~~~  153 (338)
T 3pfi_A           95 -GDL------------------AAILTN--LSEGDILFIDEIHRLSPAIEEVLYPAMEDYRLDIIIGSGPAAQTIKIDLP  153 (338)
T ss_dssp             -HHH------------------HHHHHT--CCTTCEEEEETGGGCCHHHHHHHHHHHHTSCC---------CCCCCCCCC
T ss_pred             -hHH------------------HHHHHh--ccCCCEEEEechhhcCHHHHHHHHHHHHhccchhhcccCccccceecCCC
Confidence             000                  011111  234569999999744  2222222   1110               0011


Q ss_pred             CcEEEEEeCCchhhh-c-c-CCcceEEecCCChHHHHHHHhhhhcC
Q 039455          159 GSRIIITTRDEHVLK-G-H-GVTNIYKVRGLDYVEALQLFHLKVSK  201 (216)
Q Consensus       159 ~~~il~tsr~~~~~~-~-~-~~~~~~~l~~l~~~~~~~ll~~~~~~  201 (216)
                      +..+|.+|....... . . .....+.+++++.++..+++...+..
T Consensus       154 ~~~~i~atn~~~~l~~~L~~R~~~~i~l~~~~~~e~~~il~~~~~~  199 (338)
T 3pfi_A          154 KFTLIGATTRAGMLSNPLRDRFGMQFRLEFYKDSELALILQKAALK  199 (338)
T ss_dssp             CCEEEEEESCGGGSCHHHHTTCSEEEECCCCCHHHHHHHHHHHHHH
T ss_pred             CeEEEEeCCCccccCHHHHhhcCEEeeCCCcCHHHHHHHHHHHHHh
Confidence            355666666533211 1 1 23578999999999999999877643

>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=99.03  E-value=4.2e-09  Score=86.40  Aligned_cols=168  Identities=21%  Similarity=0.222  Sum_probs=92.4

Q ss_pred             cccccccchhHHHHHHHHHhc-----------CCCCeeEEEEEecCCCcHHHHHHHHHHHhcCCCCceEeeccccccccc
Q 039455           24 AVDGLVGIASRMEKMNGYLEA-----------GLDDVRFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLANVREVSVT   92 (216)
Q Consensus        24 ~~~~~vgR~~~~~~l~~~l~~-----------~~~~~~~i~I~G~~GiGKTtL~~~~~~~~~~~~~~~~~~~~~~~~~~~   92 (216)
                      ...+..|-++..++|...+..           +-...+.+.++||+|+|||+||+++++.....|   +.+. ....  .
T Consensus       170 ~~~digGl~~~k~~l~e~v~~pl~~p~~~~~~g~~~prGiLL~GPPGtGKT~lakAiA~~~~~~~---~~v~-~~~l--~  243 (428)
T 4b4t_K          170 TYADVGGLDMQKQEIREAVELPLVQADLYEQIGIDPPRGVLLYGPPGTGKTMLVKAVANSTKAAF---IRVN-GSEF--V  243 (428)
T ss_dssp             CGGGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTTTHHHHHHHHHHHHTCEE---EEEE-GGGT--C
T ss_pred             CHHHhccHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCceEEEECCCCCCHHHHHHHHHHHhCCCe---EEEe-cchh--h
Confidence            356788999999988776531           223456899999999999999999999875332   1111 1110  0


Q ss_pred             cCchHHHHHHHHHHHhhccccccchhhhHHHHHHHhCCceEEEEEeCCCCH----------------HHHHHhhcCCC--
Q 039455           93 RGLVPLQEQLLSEVLMERNLIIWDVHKGINLIRWRLCRKRVLVVLDDVDQL----------------EQLQALAGNHD--  154 (216)
Q Consensus        93 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~llvlDd~~~~----------------~~~~~l~~~~~--  154 (216)
                      ..+..-...                 .....+..+-...++++++|+++..                ..+..++..+.  
T Consensus       244 ~~~~Ge~e~-----------------~ir~lF~~A~~~aP~IifiDEiD~i~~~R~~~~~~~~~~~~r~l~~lL~~ldg~  306 (428)
T 4b4t_K          244 HKYLGEGPR-----------------MVRDVFRLARENAPSIIFIDEVDSIATKRFDAQTGSDREVQRILIELLTQMDGF  306 (428)
T ss_dssp             CSSCSHHHH-----------------HHHHHHHHHHHTCSEEEEEECTHHHHCSCSSSCSCCCCHHHHHHHHHHHHHHHS
T ss_pred             ccccchhHH-----------------HHHHHHHHHHHcCCCeeechhhhhhhccccCCCCCCChHHHHHHHHHHHHhhCC
Confidence            011001111                 1122233333467899999988532                01223332211  


Q ss_pred             CCCCCcEEEEEeCCchhhhc--c---CCcceEEecCC-ChHHHHHHHhhhhcCCC-CCchhHhhhcc
Q 039455          155 WFGFGSRIIITTRDEHVLKG--H---GVTNIYKVRGL-DYVEALQLFHLKVSKGK-QPTDDRVELSK  214 (216)
Q Consensus       155 ~~~~~~~il~tsr~~~~~~~--~---~~~~~~~l~~l-~~~~~~~ll~~~~~~~~-~~~~~~~~l~~  214 (216)
                      ....+..+|.||..++.+..  +   ..+..++++.+ +.++..++|+.+...-. .++-+++.|++
T Consensus       307 ~~~~~v~vI~aTN~~~~LD~AllRpGRfd~~I~~p~lPd~~~R~~Il~~~~~~~~l~~~~dl~~lA~  373 (428)
T 4b4t_K          307 DQSTNVKVIMATNRADTLDPALLRPGRLDRKIEFPSLRDRRERRLIFGTIASKMSLAPEADLDSLII  373 (428)
T ss_dssp             CSSCSEEEEEEESCSSSCCHHHHSSSSEEEEEECCSSCCHHHHHHHHHHHHHSSCBCTTCCHHHHHH
T ss_pred             CCCCCEEEEEecCChhhcChhhhcCCcceEEEEcCCCCCHHHHHHHHHHHhcCCCCCcccCHHHHHH
Confidence            11234566777775543221  1   23567888655 55666677776654433 23334566553

>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*

Probab=99.03  E-value=5.5e-10  Score=86.35  Aligned_cols=157  Identities=15%  Similarity=0.177  Sum_probs=87.8

Q ss_pred             CCcccccccchhHHHHHHHHHhc----------CCCCeeEEEEEecCCCcHHHHHHHHHHHhcCCCCceEeecccccccc
Q 039455           22 PSAVDGLVGIASRMEKMNGYLEA----------GLDDVRFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLANVREVSV   91 (216)
Q Consensus        22 ~~~~~~~vgR~~~~~~l~~~l~~----------~~~~~~~i~I~G~~GiGKTtL~~~~~~~~~~~~~~~~~~~~~~~~~~   91 (216)
                      +.....++|.+..++.+...+..          .......+.|+||+|+|||+||+.++......+-.   +. ......
T Consensus         7 ~~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~~~~~~~~---v~-~~~~~~   82 (268)
T 2r62_A            7 NVRFKDMAGNEEAKEEVVEIVDFLKYPERYANLGAKIPKGVLLVGPPGTGKTLLAKAVAGEAHVPFFS---MG-GSSFIE   82 (268)
T ss_dssp             CCCSTTSSSCTTTHHHHHHHHHHHHCHHHHHHHSCCCCSCCCCBCSSCSSHHHHHHHHHHHHTCCCCC---CC-SCTTTT
T ss_pred             CCCHHHhCCcHHHHHHHHHHHHHHHChHHHHHCCCCCCceEEEECCCCCcHHHHHHHHHHHhCCCEEE---ec-hHHHHH
Confidence            34456799999999988876541          11223458899999999999999999876533211   11 111000


Q ss_pred             ccCchHHHHHHHHHHHhhccccccchhhhHHHHHHHhCCceEEEEEeCCCCHHH-----------------HHHhhcCCC
Q 039455           92 TRGLVPLQEQLLSEVLMERNLIIWDVHKGINLIRWRLCRKRVLVVLDDVDQLEQ-----------------LQALAGNHD  154 (216)
Q Consensus        92 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~llvlDd~~~~~~-----------------~~~l~~~~~  154 (216)
                      .  +           . ..  .....   ...+......++.+|+|||++....                 +..++..+.
T Consensus        83 ~--~-----------~-~~--~~~~~---~~~~~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~  143 (268)
T 2r62_A           83 M--F-----------V-GL--GASRV---RDLFETAKKQAPSIIFIDEIDAIGKSRAAGGVVSGNDEREQTLNQLLAEMD  143 (268)
T ss_dssp             S--C-----------S-SS--CSSSS---STTHHHHHHSCSCEEEESCGGGTTC----------CCCSCSSTTTTTTTTT
T ss_pred             h--h-----------c-ch--HHHHH---HHHHHHHHhcCCeEEEEeChhhhcccccccccCCCchhHHHHHHHHHHHhh
Confidence            0  0           0 00  00011   1112222234567999999965421                 222332222


Q ss_pred             CC---CCCcEEEEEeCCchhhh--cc---CCcceEEecCCChHHHHHHHhhhhcC
Q 039455          155 WF---GFGSRIIITTRDEHVLK--GH---GVTNIYKVRGLDYVEALQLFHLKVSK  201 (216)
Q Consensus       155 ~~---~~~~~il~tsr~~~~~~--~~---~~~~~~~l~~l~~~~~~~ll~~~~~~  201 (216)
                      ..   .....+|.||..+....  ..   .....+.+++.+.++..++++.....
T Consensus       144 ~~~~~~~~v~vi~ttn~~~~ld~~l~r~~Rf~~~i~i~~p~~~~r~~il~~~~~~  198 (268)
T 2r62_A          144 GFGSENAPVIVLAATNRPEILDPALMRPGRFDRQVLVDKPDFNGRVEILKVHIKG  198 (268)
T ss_dssp             CSSCSCSCCEEEECBSCCTTSCGGGGSSSSSCCCCBCCCCCTTTHHHHHHHHTSS
T ss_pred             CcccCCCCEEEEEecCCchhcCHhHcCCCCCCeEEEecCcCHHHHHHHHHHHHhc
Confidence            11   12245666776554221  11   23467889999999999999877643

>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20

Probab=99.02  E-value=1.4e-09  Score=97.00  Aligned_cols=151  Identities=13%  Similarity=0.063  Sum_probs=82.6

Q ss_pred             ccccccchhHHHHHHHHHhcCCCCeeEEEEEecCCCcHHHHHHHHHHHhcCCC------C-ceEeeccccccccccCchH
Q 039455           25 VDGLVGIASRMEKMNGYLEAGLDDVRFIGICGMGGIGKTTLAKVLYNTLKDQF------E-ASSFLANVREVSVTRGLVP   97 (216)
Q Consensus        25 ~~~~vgR~~~~~~l~~~l~~~~~~~~~i~I~G~~GiGKTtL~~~~~~~~~~~~------~-~~~~~~~~~~~~~~~~~~~   97 (216)
                      .++++||+++++.+...+....  ...++|+|++|+|||++++.+++.+....      . .+.++. +...        
T Consensus       169 ld~viGr~~~i~~l~~~l~~~~--~~~vlL~G~pG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~-~~~l--------  237 (854)
T 1qvr_A          169 LDPVIGRDEEIRRVIQILLRRT--KNNPVLIGEPGVGKTAIVEGLAQRIVKGDVPEGLKGKRIVSLQ-MGSL--------  237 (854)
T ss_dssp             SCCCCSCHHHHHHHHHHHHCSS--CCCCEEEECTTSCHHHHHHHHHHHHHHTCSCTTSTTCEEEEEC-C-----------
T ss_pred             CcccCCcHHHHHHHHHHHhcCC--CCceEEEcCCCCCHHHHHHHHHHHHhcCCCchhhcCCeEEEee-hHHh--------
Confidence            4568999999999999887532  35678999999999999999999764311      1 122222 1110        


Q ss_pred             HHHHHHHHHHhhccccccchhhh-HHHHHHHhC-CceEEEEEeCCCCHH---------HHH-HhhcCCCCCCCCcEEEEE
Q 039455           98 LQEQLLSEVLMERNLIIWDVHKG-INLIRWRLC-RKRVLVVLDDVDQLE---------QLQ-ALAGNHDWFGFGSRIIIT  165 (216)
Q Consensus        98 ~~~~l~~~~~~~~~~~~~~~~~~-~~~l~~~l~-~~~~llvlDd~~~~~---------~~~-~l~~~~~~~~~~~~il~t  165 (216)
                       ..        .... ..+.... ...+..... +++.+|+|||++...         +.. .+...+.  ..+..+|.+
T Consensus       238 -~~--------g~~~-~g~~~~~l~~~~~~~~~~~~~~iL~IDEi~~l~~~~~~~g~~~~~~~L~~~l~--~~~i~~I~a  305 (854)
T 1qvr_A          238 -LA--------GAKY-RGEFEERLKAVIQEVVQSQGEVILFIDELHTVVGAGKAEGAVDAGNMLKPALA--RGELRLIGA  305 (854)
T ss_dssp             ------------------CHHHHHHHHHHHHHTTCSSEEEEECCC-------------------HHHHH--TTCCCEEEE
T ss_pred             -hc--------cCcc-chHHHHHHHHHHHHHHhcCCCeEEEEecHHHHhccCCccchHHHHHHHHHHHh--CCCeEEEEe
Confidence             00        0000 0011111 222222333 367899999997542         111 1111111  233556666


Q ss_pred             eCCchhh------hccCCcceEEecCCChHHHHHHHhhh
Q 039455          166 TRDEHVL------KGHGVTNIYKVRGLDYVEALQLFHLK  198 (216)
Q Consensus       166 sr~~~~~------~~~~~~~~~~l~~l~~~~~~~ll~~~  198 (216)
                      |......      ........+.+++++.++..++++..
T Consensus       306 t~~~~~~~~~~d~aL~rRf~~i~l~~p~~~e~~~iL~~~  344 (854)
T 1qvr_A          306 TTLDEYREIEKDPALERRFQPVYVDEPTVEETISILRGL  344 (854)
T ss_dssp             ECHHHHHHHTTCTTTCSCCCCEEECCCCHHHHHHHHHHH
T ss_pred             cCchHHhhhccCHHHHhCCceEEeCCCCHHHHHHHHHhh
Confidence            6544321      11123456999999999999999743

>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*

Probab=99.01  E-value=7.9e-09  Score=91.12  Aligned_cols=154  Identities=14%  Similarity=0.090  Sum_probs=89.8

Q ss_pred             ccccccchhHHHHHHHHHhcCCCCeeEEEEEecCCCcHHHHHHHHHHHhcCC-C-----CceEeeccccccccccCchHH
Q 039455           25 VDGLVGIASRMEKMNGYLEAGLDDVRFIGICGMGGIGKTTLAKVLYNTLKDQ-F-----EASSFLANVREVSVTRGLVPL   98 (216)
Q Consensus        25 ~~~~vgR~~~~~~l~~~l~~~~~~~~~i~I~G~~GiGKTtL~~~~~~~~~~~-~-----~~~~~~~~~~~~~~~~~~~~~   98 (216)
                      .++++||+.+++.+.+.+...  ....++|+|++|+|||++++.++..+... .     ...+|.........       
T Consensus       185 ~d~~iGr~~~i~~l~~~l~~~--~~~~vlL~G~~GtGKT~la~~la~~l~~~~v~~~~~~~~~~~~~~~~l~~-------  255 (758)
T 1r6b_X          185 IDPLIGREKELERAIQVLCRR--RKNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSLDIGSLLA-------  255 (758)
T ss_dssp             SCCCCSCHHHHHHHHHHHTSS--SSCEEEEECCTTSSHHHHHHHHHHHHHHTCSCGGGTTCEEEECCCC---C-------
T ss_pred             CCCccCCHHHHHHHHHHHhcc--CCCCeEEEcCCCCCHHHHHHHHHHHHHhCCCChhhcCCEEEEEcHHHHhc-------
Confidence            357899999999999988754  34678999999999999999999876432 1     11222211111000       


Q ss_pred             HHHHHHHHHhhccccccchhhhHHHHHH-HhCCceEEEEEeCCCCH----------HHHHHhhcCCCCCCCCcEEEEEeC
Q 039455           99 QEQLLSEVLMERNLIIWDVHKGINLIRW-RLCRKRVLVVLDDVDQL----------EQLQALAGNHDWFGFGSRIIITTR  167 (216)
Q Consensus        99 ~~~l~~~~~~~~~~~~~~~~~~~~~l~~-~l~~~~~llvlDd~~~~----------~~~~~l~~~~~~~~~~~~il~tsr  167 (216)
                                .. ............+.. ....++.+|+|||++..          .+...++..+.. .....+|.+|.
T Consensus       256 ----------~~-~~~g~~e~~l~~~~~~~~~~~~~iL~IDEi~~l~~~~~~~~~~~~~~~~L~~~l~-~~~~~~I~at~  323 (758)
T 1r6b_X          256 ----------GT-KYRGDFEKRFKALLKQLEQDTNSILFIDEIHTIIGAGAASGGQVDAANLIKPLLS-SGKIRVIGSTT  323 (758)
T ss_dssp             ----------CC-CCSSCHHHHHHHHHHHHSSSSCEEEEETTTTTTTTSCCSSSCHHHHHHHHSSCSS-SCCCEEEEEEC
T ss_pred             ----------cc-cccchHHHHHHHHHHHHHhcCCeEEEEechHHHhhcCCCCcchHHHHHHHHHHHh-CCCeEEEEEeC
Confidence                      00 001111222222222 22345789999999754          233334433321 34456677766


Q ss_pred             Cchhhhc-------cCCcceEEecCCChHHHHHHHhhhh
Q 039455          168 DEHVLKG-------HGVTNIYKVRGLDYVEALQLFHLKV  199 (216)
Q Consensus       168 ~~~~~~~-------~~~~~~~~l~~l~~~~~~~ll~~~~  199 (216)
                      ..++...       ......+.+++.+.++..+++....
T Consensus       324 ~~~~~~~~~~d~aL~~Rf~~i~v~~p~~~e~~~il~~l~  362 (758)
T 1r6b_X          324 YQEFSNIFEKDRALARRFQKIDITEPSIEETVQIINGLK  362 (758)
T ss_dssp             HHHHHCCCCCTTSSGGGEEEEECCCCCHHHHHHHHHHHH
T ss_pred             chHHhhhhhcCHHHHhCceEEEcCCCCHHHHHHHHHHHH
Confidence            5432111       1133579999999999999887543

>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*

Probab=98.99  E-value=7.1e-09  Score=86.27  Aligned_cols=155  Identities=16%  Similarity=0.178  Sum_probs=91.3

Q ss_pred             cccccccchhHHHHHHHHHhc---C-------CCCeeEEEEEecCCCcHHHHHHHHHHHhcCCCCceEeecccccccccc
Q 039455           24 AVDGLVGIASRMEKMNGYLEA---G-------LDDVRFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLANVREVSVTR   93 (216)
Q Consensus        24 ~~~~~vgR~~~~~~l~~~l~~---~-------~~~~~~i~I~G~~GiGKTtL~~~~~~~~~~~~~~~~~~~~~~~~~~~~   93 (216)
                      .-..++|.++.++++...+..   .       ..-.+.++|+||+|+|||+|++.+++.....|   +.+. .....  .
T Consensus        14 ~f~di~G~~~~~~~l~e~v~~l~~~~~~~~~g~~~p~gvLL~GppGtGKT~Laraia~~~~~~f---~~is-~~~~~--~   87 (476)
T 2ce7_A           14 TFKDVGGAEEAIEELKEVVEFLKDPSKFNRIGARMPKGILLVGPPGTGKTLLARAVAGEANVPF---FHIS-GSDFV--E   87 (476)
T ss_dssp             CGGGCCSCHHHHHHHHHHHHHHHCTHHHHTTTCCCCSEEEEECCTTSSHHHHHHHHHHHHTCCE---EEEE-GGGTT--T
T ss_pred             CHHHhCCcHHHHHHHHHHHHHhhChHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHHHcCCCe---eeCC-HHHHH--H
Confidence            446799999988888775431   1       11234689999999999999999998764322   1221 11110  0


Q ss_pred             CchHHHHHHHHHHHhhccccccchhhhHHHHHHHhCCceEEEEEeCCCCH----------------HHHHHhhcCCCC--
Q 039455           94 GLVPLQEQLLSEVLMERNLIIWDVHKGINLIRWRLCRKRVLVVLDDVDQL----------------EQLQALAGNHDW--  155 (216)
Q Consensus        94 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~llvlDd~~~~----------------~~~~~l~~~~~~--  155 (216)
                      .+..                 .........+.......+.+|+||+++..                ..+..++..+..  
T Consensus        88 ~~~g-----------------~~~~~~r~lf~~A~~~~p~ILfIDEid~l~~~r~~~~~g~~~~~~~~l~~LL~~ld~~~  150 (476)
T 2ce7_A           88 LFVG-----------------VGAARVRDLFAQAKAHAPCIVFIDEIDAVGRHRGAGLGGGHDEREQTLNQLLVEMDGFD  150 (476)
T ss_dssp             CCTT-----------------HHHHHHHHHHHHHHHTCSEEEEEETGGGTCCC---------CHHHHHHHHHHHHHHHSC
T ss_pred             HHhc-----------------ccHHHHHHHHHHHHhcCCCEEEEechhhhhhhcccccCcCcHHHHHHHHHHHHHHhccC
Confidence            0000                 00112233345555567899999999542                123333322210  


Q ss_pred             CCCCcEEEEEeCCchhhhc--c---CCcceEEecCCChHHHHHHHhhhhcC
Q 039455          156 FGFGSRIIITTRDEHVLKG--H---GVTNIYKVRGLDYVEALQLFHLKVSK  201 (216)
Q Consensus       156 ~~~~~~il~tsr~~~~~~~--~---~~~~~~~l~~l~~~~~~~ll~~~~~~  201 (216)
                      ...+..||.||+.++.+..  .   .....+.+++.+.++..++++.+...
T Consensus       151 ~~~~viVIaaTn~~~~Ld~allR~gRFd~~i~i~~Pd~~~R~~Il~~~~~~  201 (476)
T 2ce7_A          151 SKEGIIVMAATNRPDILDPALLRPGRFDKKIVVDPPDMLGRKKILEIHTRN  201 (476)
T ss_dssp             GGGTEEEEEEESCGGGSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTT
T ss_pred             CCCCEEEEEecCChhhhchhhcccCcceeEeecCCCCHHHHHHHHHHHHHh
Confidence            1235667778877654321  1   23458899999999988988776644

>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20

Probab=98.97  E-value=1e-08  Score=78.68  Aligned_cols=157  Identities=16%  Similarity=0.131  Sum_probs=87.4

Q ss_pred             CCcccccccchhHHHHHHHHHhc---C-------CCCeeEEEEEecCCCcHHHHHHHHHHHhcCCCCceEeecccccccc
Q 039455           22 PSAVDGLVGIASRMEKMNGYLEA---G-------LDDVRFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLANVREVSV   91 (216)
Q Consensus        22 ~~~~~~~vgR~~~~~~l~~~l~~---~-------~~~~~~i~I~G~~GiGKTtL~~~~~~~~~~~~~~~~~~~~~~~~~~   91 (216)
                      +..-..++|.+...+.+...+..   .       ......++|+|++|+|||||++.+++.....+   +.+. ......
T Consensus         8 ~~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~~~~~~---~~i~-~~~~~~   83 (257)
T 1lv7_A            8 KTTFADVAGCDEAKEEVAELVEYLREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGEAKVPF---FTIS-GSDFVE   83 (257)
T ss_dssp             CCCGGGSCSCHHHHHHTHHHHHHHHCGGGC-----CCCCEEEEECCTTSCHHHHHHHHHHHHTCCE---EEEC-SCSSTT
T ss_pred             CCCHHHhcCcHHHHHHHHHHHHHHhCHHHHHHcCCCCCCeEEEECcCCCCHHHHHHHHHHHcCCCE---EEEe-HHHHHH
Confidence            34556799999988887765431   1       11235699999999999999999998764221   2222 111100


Q ss_pred             ccCchHHHHHHHHHHHhhccccccchhhhHHHHHHHhCCceEEEEEeCCCCH----------------HHHHHhhcCCCC
Q 039455           92 TRGLVPLQEQLLSEVLMERNLIIWDVHKGINLIRWRLCRKRVLVVLDDVDQL----------------EQLQALAGNHDW  155 (216)
Q Consensus        92 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~llvlDd~~~~----------------~~~~~l~~~~~~  155 (216)
                      .. .                  ..........+.......+.++++|+++..                ..+..++..+..
T Consensus        84 ~~-~------------------~~~~~~~~~~~~~a~~~~~~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~  144 (257)
T 1lv7_A           84 MF-V------------------GVGASRVRDMFEQAKKAAPCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDG  144 (257)
T ss_dssp             SC-C------------------CCCHHHHHHHHHHHHTTCSEEEEETTHHHHTCCCSTTSCCTTCHHHHHHHHHHHHHHT
T ss_pred             Hh-h------------------hhhHHHHHHHHHHHHHcCCeeehhhhhhhhccCCCCCcCCCchHHHHHHHHHHHHhhC
Confidence            00 0                  000111122233334456789999988422                112223221110


Q ss_pred             --CCCCcEEEEEeCCchhhh-cc----CCcceEEecCCChHHHHHHHhhhhcC
Q 039455          156 --FGFGSRIIITTRDEHVLK-GH----GVTNIYKVRGLDYVEALQLFHLKVSK  201 (216)
Q Consensus       156 --~~~~~~il~tsr~~~~~~-~~----~~~~~~~l~~l~~~~~~~ll~~~~~~  201 (216)
                        ...+..+|.||..++... .+    .....+.+++.+.++..++++.+...
T Consensus       145 ~~~~~~~~vI~~tn~~~~l~~~l~r~~rf~~~i~i~~P~~~~r~~il~~~~~~  197 (257)
T 1lv7_A          145 FEGNEGIIVIAATNRPDVLDPALLRPGRFDRQVVVGLPDVRGREQILKVHMRR  197 (257)
T ss_dssp             CCSSSCEEEEEEESCTTTSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTT
T ss_pred             cccCCCEEEEEeeCCchhCCHHHcCCCcCCeEEEeCCCCHHHHHHHHHHHHhc
Confidence              123456677776654221 11    23467889999999988988876533

>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*

Probab=98.96  E-value=3.8e-09  Score=76.79  Aligned_cols=44  Identities=16%  Similarity=0.224  Sum_probs=32.0

Q ss_pred             chhHHHHHHHHHhcC-CCCeeEEEEEecCCCcHHHHHHHHHHHhc
Q 039455           31 IASRMEKMNGYLEAG-LDDVRFIGICGMGGIGKTTLAKVLYNTLK   74 (216)
Q Consensus        31 R~~~~~~l~~~l~~~-~~~~~~i~I~G~~GiGKTtL~~~~~~~~~   74 (216)
                      +...++.+..++..- ...+..++|+||+|+|||||++.+++.+.
T Consensus        19 ~~~~~~~~~~~~~~~~~~~g~~~~l~G~~G~GKTtL~~~i~~~~~   63 (180)
T 3ec2_A           19 QNRALLTIRVFVHNFNPEEGKGLTFVGSPGVGKTHLAVATLKAIY   63 (180)
T ss_dssp             HHHHHHHHHHHHHSCCGGGCCEEEECCSSSSSHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhccccCCCEEEEECCCCCCHHHHHHHHHHHHH
Confidence            344455555555432 23357899999999999999999999775

>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}

Probab=98.95  E-value=1.6e-08  Score=89.19  Aligned_cols=148  Identities=12%  Similarity=0.062  Sum_probs=85.7

Q ss_pred             ccccccchhHHHHHHHHHhcCCCCeeEEEEEecCCCcHHHHHHHHHHHhcCCC-C----ceEeeccccccccccCchHHH
Q 039455           25 VDGLVGIASRMEKMNGYLEAGLDDVRFIGICGMGGIGKTTLAKVLYNTLKDQF-E----ASSFLANVREVSVTRGLVPLQ   99 (216)
Q Consensus        25 ~~~~vgR~~~~~~l~~~l~~~~~~~~~i~I~G~~GiGKTtL~~~~~~~~~~~~-~----~~~~~~~~~~~~~~~~~~~~~   99 (216)
                      .++++||+++++.+...+...  ....++++|++|+|||++|+.++..+.... +    ...++.    .    +.    
T Consensus       179 ld~iiG~~~~i~~l~~~l~~~--~~~~vLL~G~pGtGKT~la~~la~~l~~~~~p~~l~~~~~~~----~----~~----  244 (758)
T 3pxi_A          179 LDPVIGRSKEIQRVIEVLSRR--TKNNPVLIGEPGVGKTAIAEGLAQQIINNEVPEILRDKRVMT----L----DM----  244 (758)
T ss_dssp             SCCCCCCHHHHHHHHHHHHCS--SSCEEEEESCTTTTTHHHHHHHHHHHHSSCSCTTTSSCCEEC----C----------
T ss_pred             CCCccCchHHHHHHHHHHhCC--CCCCeEEECCCCCCHHHHHHHHHHHHhcCCCChhhcCCeEEE----e----cc----
Confidence            457999999999999988753  235689999999999999999999864321 1    111111    0    00    


Q ss_pred             HHHHHHHHhhccccccchhhhHHHHHHHhCCceEEEEEeCCCCHHHHHHhhcCCCCCCCCcEEEEEeCCchhhhc-----
Q 039455          100 EQLLSEVLMERNLIIWDVHKGINLIRWRLCRKRVLVVLDDVDQLEQLQALAGNHDWFGFGSRIIITTRDEHVLKG-----  174 (216)
Q Consensus       100 ~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~llvlDd~~~~~~~~~l~~~~~~~~~~~~il~tsr~~~~~~~-----  174 (216)
                         ...      ............+......++.+|++|  ...+....+...+.  .....+|.+|....+...     
T Consensus       245 ---g~~------~~G~~e~~l~~~~~~~~~~~~~iLfiD--~~~~~~~~L~~~l~--~~~v~~I~at~~~~~~~~~~~d~  311 (758)
T 3pxi_A          245 ---GTK------YRGEFEDRLKKVMDEIRQAGNIILFID--AAIDASNILKPSLA--RGELQCIGATTLDEYRKYIEKDA  311 (758)
T ss_dssp             -----------------CTTHHHHHHHHHTCCCCEEEEC--C--------CCCTT--SSSCEEEEECCTTTTHHHHTTCS
T ss_pred             ---ccc------ccchHHHHHHHHHHHHHhcCCEEEEEc--CchhHHHHHHHHHh--cCCEEEEeCCChHHHHHHhhccH
Confidence               000      000011122233333444678899999  22233333444433  344667777765542110     


Q ss_pred             --cCCcceEEecCCChHHHHHHHhhhh
Q 039455          175 --HGVTNIYKVRGLDYVEALQLFHLKV  199 (216)
Q Consensus       175 --~~~~~~~~l~~l~~~~~~~ll~~~~  199 (216)
                        ...+..+.+++++.++..+++....
T Consensus       312 al~rRf~~i~v~~p~~~~~~~il~~~~  338 (758)
T 3pxi_A          312 ALERRFQPIQVDQPSVDESIQILQGLR  338 (758)
T ss_dssp             HHHHSEEEEECCCCCHHHHHHHHHHTT
T ss_pred             HHHhhCcEEEeCCCCHHHHHHHHHHHH
Confidence              1134679999999999999998654

>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=98.94  E-value=1.2e-08  Score=81.60  Aligned_cols=155  Identities=14%  Similarity=0.216  Sum_probs=86.7

Q ss_pred             CcccccccchhHHHHHHHHHhcCCCCeeEEEEEecCCCcHHHHHHHHHHHhcCCCCc--eEeeccccccccccCchHHHH
Q 039455           23 SAVDGLVGIASRMEKMNGYLEAGLDDVRFIGICGMGGIGKTTLAKVLYNTLKDQFEA--SSFLANVREVSVTRGLVPLQE  100 (216)
Q Consensus        23 ~~~~~~vgR~~~~~~l~~~l~~~~~~~~~i~I~G~~GiGKTtL~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~  100 (216)
                      ..-..++|.+..++.|...+..+  ..+.++++||+|+||||+++.+++.+......  +..+. ...   .... ....
T Consensus        22 ~~~~~~~g~~~~~~~L~~~i~~g--~~~~~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~-~~~---~~~~-~~ir   94 (340)
T 1sxj_C           22 ETLDEVYGQNEVITTVRKFVDEG--KLPHLLFYGPPGTGKTSTIVALAREIYGKNYSNMVLELN-ASD---DRGI-DVVR   94 (340)
T ss_dssp             SSGGGCCSCHHHHHHHHHHHHTT--CCCCEEEECSSSSSHHHHHHHHHHHHHTTSHHHHEEEEC-TTS---CCSH-HHHH
T ss_pred             CcHHHhcCcHHHHHHHHHHHhcC--CCceEEEECCCCCCHHHHHHHHHHHHcCCCccceEEEEc-Ccc---cccH-HHHH
Confidence            34566899999999998888754  22348999999999999999999976432111  11111 110   0111 1111


Q ss_pred             HHHHHHHhhccccccchhhhHHHHHHHhCCceEEEEEeCCCCH--HHHHHhhcCCCCCCCCcEEEEEeCCch-hhhcc-C
Q 039455          101 QLLSEVLMERNLIIWDVHKGINLIRWRLCRKRVLVVLDDVDQL--EQLQALAGNHDWFGFGSRIIITTRDEH-VLKGH-G  176 (216)
Q Consensus       101 ~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~llvlDd~~~~--~~~~~l~~~~~~~~~~~~il~tsr~~~-~~~~~-~  176 (216)
                      .....+....               ..+.++..++|+|+++..  +....+...+..-.....++++|.... +...+ .
T Consensus        95 ~~i~~~~~~~---------------~~~~~~~~viiiDe~~~l~~~~~~~L~~~le~~~~~~~~il~~n~~~~i~~~i~s  159 (340)
T 1sxj_C           95 NQIKDFASTR---------------QIFSKGFKLIILDEADAMTNAAQNALRRVIERYTKNTRFCVLANYAHKLTPALLS  159 (340)
T ss_dssp             THHHHHHHBC---------------CSSSCSCEEEEETTGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHHT
T ss_pred             HHHHHHHhhc---------------ccCCCCceEEEEeCCCCCCHHHHHHHHHHHhcCCCCeEEEEEecCccccchhHHh
Confidence            1111110000               011234679999999743  222333222211124556677766442 11111 1


Q ss_pred             CcceEEecCCChHHHHHHHhhhh
Q 039455          177 VTNIYKVRGLDYVEALQLFHLKV  199 (216)
Q Consensus       177 ~~~~~~l~~l~~~~~~~ll~~~~  199 (216)
                      ....+.+.+++.++..+.+...+
T Consensus       160 R~~~~~~~~l~~~~~~~~l~~~~  182 (340)
T 1sxj_C          160 QCTRFRFQPLPQEAIERRIANVL  182 (340)
T ss_dssp             TSEEEECCCCCHHHHHHHHHHHH
T ss_pred             hceeEeccCCCHHHHHHHHHHHH
Confidence            23578999999999999888765

>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*

Probab=98.91  E-value=5.8e-08  Score=77.50  Aligned_cols=159  Identities=15%  Similarity=0.060  Sum_probs=85.4

Q ss_pred             cchhHHHHHHHHHhcCCCCeeEEEEEecCCCcHHHHHHHHHHHhcCCCCceEeeccccccccccCchHHHHHHHHHHHhh
Q 039455           30 GIASRMEKMNGYLEAGLDDVRFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLANVREVSVTRGLVPLQEQLLSEVLME  109 (216)
Q Consensus        30 gR~~~~~~l~~~l~~~~~~~~~i~I~G~~GiGKTtL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  109 (216)
                      ..++..+.+...+..+ .-...+.++||+|+|||++|+.++..+....... ... +       .....+..+...-...
T Consensus         6 w~~~~~~~l~~~i~~~-~~~~a~L~~G~~G~GKt~~a~~la~~l~~~~~~~-~~~-c-------~~c~~c~~~~~~~~~d   75 (334)
T 1a5t_A            6 WLRPDFEKLVASYQAG-RGHHALLIQALPGMGDDALIYALSRYLLCQQPQG-HKS-C-------GHCRGCQLMQAGTHPD   75 (334)
T ss_dssp             GGHHHHHHHHHHHHTT-CCCSEEEEECCTTSCHHHHHHHHHHHHTCSSCBT-TBC-C-------SCSHHHHHHHHTCCTT
T ss_pred             chHHHHHHHHHHHHcC-CcceeEEEECCCCchHHHHHHHHHHHHhCCCCCC-CCC-C-------CCCHHHHHHhcCCCCC
Confidence            3456667777776643 2345799999999999999999998765332110 000 0       0000011100000000


Q ss_pred             ---ccc----cccchhhhHHHHHHHh-----CCceEEEEEeCCCCH--HHHHHhhcCCCCCCCCcEEEEEeCCch-hhhc
Q 039455          110 ---RNL----IIWDVHKGINLIRWRL-----CRKRVLVVLDDVDQL--EQLQALAGNHDWFGFGSRIIITTRDEH-VLKG  174 (216)
Q Consensus       110 ---~~~----~~~~~~~~~~~l~~~l-----~~~~~llvlDd~~~~--~~~~~l~~~~~~~~~~~~il~tsr~~~-~~~~  174 (216)
                         ...    .....+... .+.+.+     .+++.++|||+++..  +....++..+..-..+..+|++|+.++ +...
T Consensus        76 ~~~~~~~~~~~~~~i~~ir-~l~~~~~~~~~~~~~kvviIdead~l~~~a~naLLk~lEep~~~~~~Il~t~~~~~l~~t  154 (334)
T 1a5t_A           76 YYTLAPEKGKNTLGVDAVR-EVTEKLNEHARLGGAKVVWVTDAALLTDAAANALLKTLEEPPAETWFFLATREPERLLAT  154 (334)
T ss_dssp             EEEECCCTTCSSBCHHHHH-HHHHHTTSCCTTSSCEEEEESCGGGBCHHHHHHHHHHHTSCCTTEEEEEEESCGGGSCHH
T ss_pred             EEEEeccccCCCCCHHHHH-HHHHHHhhccccCCcEEEEECchhhcCHHHHHHHHHHhcCCCCCeEEEEEeCChHhCcHH
Confidence               000    001111111 122222     245779999999854  334445444332234566777776653 2222


Q ss_pred             c-CCcceEEecCCChHHHHHHHhhhh
Q 039455          175 H-GVTNIYKVRGLDYVEALQLFHLKV  199 (216)
Q Consensus       175 ~-~~~~~~~l~~l~~~~~~~ll~~~~  199 (216)
                      + .....+++++++.++..+++....
T Consensus       155 i~SRc~~~~~~~~~~~~~~~~L~~~~  180 (334)
T 1a5t_A          155 LRSRCRLHYLAPPPEQYAVTWLSREV  180 (334)
T ss_dssp             HHTTSEEEECCCCCHHHHHHHHHHHC
T ss_pred             HhhcceeeeCCCCCHHHHHHHHHHhc
Confidence            1 233689999999999999998775

>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}

Probab=98.89  E-value=1e-08  Score=80.88  Aligned_cols=49  Identities=18%  Similarity=0.218  Sum_probs=39.7

Q ss_pred             cccccchhHHHHHHHHHhcCCCCeeEEEEEecCCCcHHHHHHHHHHHhc
Q 039455           26 DGLVGIASRMEKMNGYLEAGLDDVRFIGICGMGGIGKTTLAKVLYNTLK   74 (216)
Q Consensus        26 ~~~vgR~~~~~~l~~~l~~~~~~~~~i~I~G~~GiGKTtL~~~~~~~~~   74 (216)
                      ..++|++..++.+...+.........+.|+|++|+|||++|+.+.....
T Consensus         2 ~~iig~s~~~~~~~~~~~~~a~~~~~vLi~Ge~GtGKt~lAr~i~~~~~   50 (304)
T 1ojl_A            2 SHMIGSSPAMQHLLNEIAMVAPSDATVLIHGDSGTGKELVARALHACSA   50 (304)
T ss_dssp             -CCCCCSHHHHHHHHHHHHHCSTTSCEEEESCTTSCHHHHHHHHHHHSS
T ss_pred             CCcEECCHHHHHHHHHHHHHhCCCCcEEEECCCCchHHHHHHHHHHhCc
Confidence            3589999999999887764333446789999999999999999988653

>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}

Probab=98.89  E-value=1.3e-09  Score=76.90  Aligned_cols=37  Identities=19%  Similarity=0.319  Sum_probs=28.2

Q ss_pred             CeeEEEEEecCCCcHHHHHHHHHHHhcCCCCceEeec
Q 039455           48 DVRFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLA   84 (216)
Q Consensus        48 ~~~~i~I~G~~GiGKTtL~~~~~~~~~~~~~~~~~~~   84 (216)
                      .+..++|+|++|+|||||++.+++.+......+.++.
T Consensus        35 ~g~~~~l~G~~G~GKTtL~~~i~~~~~~~g~~~~~~~   71 (149)
T 2kjq_A           35 HGQFIYVWGEEGAGKSHLLQAWVAQALEAGKNAAYID   71 (149)
T ss_dssp             CCSEEEEESSSTTTTCHHHHHHHHHHHTTTCCEEEEE
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHHHHHhcCCcEEEEc
Confidence            4578999999999999999999997764322244543

>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*

Probab=98.88  E-value=8.2e-09  Score=79.65  Aligned_cols=49  Identities=22%  Similarity=0.144  Sum_probs=36.5

Q ss_pred             cccccchhHHHHHHHHHhcCCCCeeEEEEEecCCCcHHHHHHHHHHHhc
Q 039455           26 DGLVGIASRMEKMNGYLEAGLDDVRFIGICGMGGIGKTTLAKVLYNTLK   74 (216)
Q Consensus        26 ~~~vgR~~~~~~l~~~l~~~~~~~~~i~I~G~~GiGKTtL~~~~~~~~~   74 (216)
                      +.++|++..++.+.+.+..-......+.|+|++|+|||++|+.++....
T Consensus         6 ~~~ig~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKt~la~~i~~~~~   54 (265)
T 2bjv_A            6 DNLLGEANSFLEVLEQVSHLAPLDKPVLIIGERGTGKELIASRLHYLSS   54 (265)
T ss_dssp             ----CCCHHHHHHHHHHHHHTTSCSCEEEECCTTSCHHHHHHHHHHTST
T ss_pred             ccceeCCHHHHHHHHHHHHHhCCCCCEEEECCCCCcHHHHHHHHHHhcC
Confidence            4589999999998876653223346889999999999999999998654

>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20

Probab=98.86  E-value=3.4e-08  Score=77.82  Aligned_cols=146  Identities=14%  Similarity=0.043  Sum_probs=86.2

Q ss_pred             cchhHHHHHHHHHhcCCCCeeEEEEEecCCCcHHHHHHHHHHHhc---CCCCceEeeccccccccccCchHHHHHHHHHH
Q 039455           30 GIASRMEKMNGYLEAGLDDVRFIGICGMGGIGKTTLAKVLYNTLK---DQFEASSFLANVREVSVTRGLVPLQEQLLSEV  106 (216)
Q Consensus        30 gR~~~~~~l~~~l~~~~~~~~~i~I~G~~GiGKTtL~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~  106 (216)
                      |.++.++.|...+..+.  .+.+.++||+|+|||++++.++..+.   ...+...++...+.   .... +....+....
T Consensus         1 g~~~~~~~L~~~i~~~~--~~~~Lf~Gp~G~GKtt~a~~la~~~~~~~~~~~d~~~l~~~~~---~~~i-d~ir~li~~~   74 (305)
T 2gno_A            1 GAKDQLETLKRIIEKSE--GISILINGEDLSYPREVSLELPEYVEKFPPKASDVLEIDPEGE---NIGI-DDIRTIKDFL   74 (305)
T ss_dssp             ---CHHHHHHHHHHTCS--SEEEEEECSSSSHHHHHHHHHHHHHHTSCCCTTTEEEECCSSS---CBCH-HHHHHHHHHH
T ss_pred             ChHHHHHHHHHHHHCCC--CcEEEEECCCCCCHHHHHHHHHHhCchhhccCCCEEEEcCCcC---CCCH-HHHHHHHHHH
Confidence            45667778888877643  68999999999999999999987531   22344444431100   1111 1122222221


Q ss_pred             HhhccccccchhhhHHHHHHHhCCceEEEEEeCCCCH--HHHHHhhcCCCCCCCCcEEEEEeCCc-hhhhccCCcceEEe
Q 039455          107 LMERNLIIWDVHKGINLIRWRLCRKRVLVVLDDVDQL--EQLQALAGNHDWFGFGSRIIITTRDE-HVLKGHGVTNIYKV  183 (216)
Q Consensus       107 ~~~~~~~~~~~~~~~~~l~~~l~~~~~llvlDd~~~~--~~~~~l~~~~~~~~~~~~il~tsr~~-~~~~~~~~~~~~~l  183 (216)
                      ...                 ...++.-++|+|+++..  +..+.++..+..-.+.+.+|++|.++ .+...+..- .+++
T Consensus        75 ~~~-----------------p~~~~~kvviIdead~lt~~a~naLLk~LEep~~~t~fIl~t~~~~kl~~tI~SR-~~~f  136 (305)
T 2gno_A           75 NYS-----------------PELYTRKYVIVHDCERMTQQAANAFLKALEEPPEYAVIVLNTRRWHYLLPTIKSR-VFRV  136 (305)
T ss_dssp             TSC-----------------CSSSSSEEEEETTGGGBCHHHHHHTHHHHHSCCTTEEEEEEESCGGGSCHHHHTT-SEEE
T ss_pred             hhc-----------------cccCCceEEEeccHHHhCHHHHHHHHHHHhCCCCCeEEEEEECChHhChHHHHce-eEeC
Confidence            100                 01234679999999754  34444443333223456677776554 333333333 9999


Q ss_pred             cCCChHHHHHHHhhhh
Q 039455          184 RGLDYVEALQLFHLKV  199 (216)
Q Consensus       184 ~~l~~~~~~~ll~~~~  199 (216)
                      +|++.++..+.+.+..
T Consensus       137 ~~l~~~~i~~~L~~~~  152 (305)
T 2gno_A          137 VVNVPKEFRDLVKEKI  152 (305)
T ss_dssp             ECCCCHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHh
Confidence            9999999999998775

>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*

Probab=98.85  E-value=1.9e-08  Score=79.16  Aligned_cols=51  Identities=27%  Similarity=0.321  Sum_probs=39.9

Q ss_pred             cccccchhHHHHHHHHHhcC-------CCCeeEEEEEecCCCcHHHHHHHHHHHhcCC
Q 039455           26 DGLVGIASRMEKMNGYLEAG-------LDDVRFIGICGMGGIGKTTLAKVLYNTLKDQ   76 (216)
Q Consensus        26 ~~~vgR~~~~~~l~~~l~~~-------~~~~~~i~I~G~~GiGKTtL~~~~~~~~~~~   76 (216)
                      ..++|.+..++.+...+...       ......++++||+|+|||++|+.+++.....
T Consensus        17 ~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~ll~G~~GtGKt~la~~la~~~~~~   74 (311)
T 4fcw_A           17 KRVVGQDEAIRAVADAIRRARAGLKDPNRPIGSFLFLGPTGVGKTELAKTLAATLFDT   74 (311)
T ss_dssp             TTCCSCHHHHHHHHHHHHHHHHTCSCTTSCSEEEEEESCSSSSHHHHHHHHHHHHHSC
T ss_pred             hhcCCHHHHHHHHHHHHHHHhcCCCCCCCCceEEEEECCCCcCHHHHHHHHHHHHcCC
Confidence            34789999999988876632       1113589999999999999999999976543

>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*

Probab=98.83  E-value=1.6e-08  Score=88.76  Aligned_cols=167  Identities=15%  Similarity=0.148  Sum_probs=96.2

Q ss_pred             ccccccchhHHHHHHHHHhc-----------CCCCeeEEEEEecCCCcHHHHHHHHHHHhcCCCCceEeecccccccccc
Q 039455           25 VDGLVGIASRMEKMNGYLEA-----------GLDDVRFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLANVREVSVTR   93 (216)
Q Consensus        25 ~~~~vgR~~~~~~l~~~l~~-----------~~~~~~~i~I~G~~GiGKTtL~~~~~~~~~~~~~~~~~~~~~~~~~~~~   93 (216)
                      .....|-++.+++|.+.+..           +-.-.+.|.++||+|+|||+||+.+++.+..+   .+.+. ...     
T Consensus       203 ~~dIgGl~~~~~~l~e~v~~pl~~p~~f~~~g~~~p~GILL~GPPGTGKT~LAraiA~elg~~---~~~v~-~~~-----  273 (806)
T 3cf2_A          203 YDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAF---FFLIN-GPE-----  273 (806)
T ss_dssp             GGGCCSCCTTHHHHHHHHHHHHHCCGGGTSCCCCCCCEEEEECCTTSCHHHHHHHHHTTTTCE---EEEEE-HHH-----
T ss_pred             hhhhcCHHHHHHHHHHHHHHHccCHHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHHHhCCe---EEEEE-hHH-----
Confidence            35678889988888876531           11235789999999999999999999876432   22222 111     


Q ss_pred             CchHHHHHHHHHHHhhccccccchhhhHHHHHHHhCCceEEEEEeCCCCH-------------HHHHHhhcCCCCC--CC
Q 039455           94 GLVPLQEQLLSEVLMERNLIIWDVHKGINLIRWRLCRKRVLVVLDDVDQL-------------EQLQALAGNHDWF--GF  158 (216)
Q Consensus        94 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~llvlDd~~~~-------------~~~~~l~~~~~~~--~~  158 (216)
                              +..    .  +.......+...+..+....+.+|+||+++.+             .-+..++..+...  ..
T Consensus       274 --------l~s----k--~~gese~~lr~lF~~A~~~~PsIIfIDEiDal~~~r~~~~~~~~~riv~~LL~~mdg~~~~~  339 (806)
T 3cf2_A          274 --------IMS----K--LAGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRA  339 (806)
T ss_dssp             --------HHS----S--CTTHHHHHHHHHHHHHTTSCSEEEEEESGGGTCCTTTTCCCTTHHHHHHHHHTHHHHCCGGG
T ss_pred             --------hhc----c--cchHHHHHHHHHHHHHHHcCCeEEEEehhcccccccCCCCChHHHHHHHHHHHHHhcccccC
Confidence                    100    0  00111122233444455677999999998643             1122333221110  12


Q ss_pred             CcEEEEEeCCchhhhc-c----CCcceEEecCCChHHHHHHHhhhhcCCC-CCchhHhhhcc
Q 039455          159 GSRIIITTRDEHVLKG-H----GVTNIYKVRGLDYVEALQLFHLKVSKGK-QPTDDRVELSK  214 (216)
Q Consensus       159 ~~~il~tsr~~~~~~~-~----~~~~~~~l~~l~~~~~~~ll~~~~~~~~-~~~~~~~~l~~  214 (216)
                      +..+|.||..++.+.. +    ..+..++++..+.++..++|+.+..... ..+-++..|++
T Consensus       340 ~V~VIaaTN~~d~LD~ALrR~GRFd~~I~i~~Pd~~~R~~IL~~~l~~~~~~~dvdl~~lA~  401 (806)
T 3cf2_A          340 HVIVMAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHTKNMKLADDVDLEQVAN  401 (806)
T ss_dssp             CEEEEEECSSTTTSCTTTTSTTSSCEEEECCCCCHHHHHHHHHHTCSSSEECTTCCHHHHHH
T ss_pred             CEEEEEecCChhhcCHHHhCCcccceEEecCCCCHHHHHHHHHHHhcCCCCCcccCHHHHHH
Confidence            3455666665433221 1    2467899999999999999987764433 23334555553

>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*

Probab=98.82  E-value=2.6e-07  Score=70.67  Aligned_cols=157  Identities=13%  Similarity=0.122  Sum_probs=84.5

Q ss_pred             CCCcccccccchhHHHHHHHHHhc--C--------CCCeeEEEEEecCCCcHHHHHHHHHHHhcCCCCceEeeccccccc
Q 039455           21 FPSAVDGLVGIASRMEKMNGYLEA--G--------LDDVRFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLANVREVS   90 (216)
Q Consensus        21 ~~~~~~~~vgR~~~~~~l~~~l~~--~--------~~~~~~i~I~G~~GiGKTtL~~~~~~~~~~~~~~~~~~~~~~~~~   90 (216)
                      ++...+.++|.+....++......  .        ..-.+.++|+||+|+|||||++.+++....  + .+.+. ...  
T Consensus        11 ~~~~~~~i~g~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~g~ll~G~~G~GKTtl~~~i~~~~~~--~-~i~~~-~~~--   84 (254)
T 1ixz_A           11 PKVTFKDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEARV--P-FITAS-GSD--   84 (254)
T ss_dssp             CSCCGGGCCSCHHHHHHHHHHHHHHHCHHHHHHTTCCCCSEEEEECCTTSSHHHHHHHHHHHTTC--C-EEEEE-HHH--
T ss_pred             CCCCHHHhCCcHHHHHHHHHHHHHHHCHHHHHHcCCCCCCeEEEECCCCCCHHHHHHHHHHHhCC--C-EEEee-HHH--
Confidence            344557789998887777654321  0        011234999999999999999999987642  1 22221 000  


Q ss_pred             cccCchHHHHHHHHHHHhhccccccchhhhHHHHHHHh-CCceEEEEEeCCCCHH----------------HHHHhhcCC
Q 039455           91 VTRGLVPLQEQLLSEVLMERNLIIWDVHKGINLIRWRL-CRKRVLVVLDDVDQLE----------------QLQALAGNH  153 (216)
Q Consensus        91 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l-~~~~~llvlDd~~~~~----------------~~~~l~~~~  153 (216)
                                 +...    .   ..........+.+.. ...+.++++||++...                .+..++..+
T Consensus        85 -----------~~~~----~---~~~~~~~i~~~~~~~~~~~~~i~~~Deid~l~~~~~~~~~~~~~~~~~~~~~ll~~l  146 (254)
T 1ixz_A           85 -----------FVEM----F---VGVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEM  146 (254)
T ss_dssp             -----------HHHS----C---TTHHHHHHHHHHHHHTTSSSEEEEEETHHHHHC---------CHHHHHHHHHHHHHH
T ss_pred             -----------HHHH----H---hhHHHHHHHHHHHHHHhcCCeEEEehhhhhhhcccCccccccchHHHHHHHHHHHHH
Confidence                       0000    0   000001111222222 2457899999985321                122332222


Q ss_pred             CCC--CCCcEEEEEeCCchhhhc-----cCCcceEEecCCChHHHHHHHhhhhcC
Q 039455          154 DWF--GFGSRIIITTRDEHVLKG-----HGVTNIYKVRGLDYVEALQLFHLKVSK  201 (216)
Q Consensus       154 ~~~--~~~~~il~tsr~~~~~~~-----~~~~~~~~l~~l~~~~~~~ll~~~~~~  201 (216)
                      ...  +....++.+|..+.....     ......+.+++.+.++..++++.....
T Consensus       147 ~g~~~~~~~i~~a~t~~p~~ld~~l~r~~rf~~~i~i~~p~~~~r~~il~~~~~~  201 (254)
T 1ixz_A          147 DGFEKDTAIVVMAATNRPDILDPALLRPGRFDRQIAIDAPDVKGREQILRIHARG  201 (254)
T ss_dssp             HTCCTTCCEEEEEEESCGGGSCGGGGSTTSSCEEEECCSCCHHHHHHHHHHHHTT
T ss_pred             hCCCCCCCEEEEEccCCchhCCHHHcCCCcCCeEEeeCCcCHHHHHHHHHHHHcC
Confidence            110  122344556666554322     124578999999999999999876533

>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}

Probab=98.81  E-value=6.3e-09  Score=72.87  Aligned_cols=48  Identities=19%  Similarity=0.168  Sum_probs=35.3

Q ss_pred             cccccchhHHHHHHHHHhcCCCCeeEEEEEecCCCcHHHHHHHHHHHh
Q 039455           26 DGLVGIASRMEKMNGYLEAGLDDVRFIGICGMGGIGKTTLAKVLYNTL   73 (216)
Q Consensus        26 ~~~vgR~~~~~~l~~~l~~~~~~~~~i~I~G~~GiGKTtL~~~~~~~~   73 (216)
                      ..++|++..++.+.+.+..-......+.|+|++|+|||++|+.++...
T Consensus         4 ~~~iG~s~~~~~l~~~~~~~~~~~~~vll~G~~GtGKt~lA~~i~~~~   51 (143)
T 3co5_A            4 FDKLGNSAAIQEMNREVEAAAKRTSPVFLTGEAGSPFETVARYFHKNG   51 (143)
T ss_dssp             ----CCCHHHHHHHHHHHHHHTCSSCEEEEEETTCCHHHHHGGGCCTT
T ss_pred             cCceeCCHHHHHHHHHHHHHhCCCCcEEEECCCCccHHHHHHHHHHhC
Confidence            358999999999988766322233578999999999999999987654

>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*

Probab=98.80  E-value=2.4e-08  Score=78.45  Aligned_cols=49  Identities=22%  Similarity=0.228  Sum_probs=39.4

Q ss_pred             cccccchhHHHHHHHHHhc------------CCCCeeEEEEEecCCCcHHHHHHHHHHHhc
Q 039455           26 DGLVGIASRMEKMNGYLEA------------GLDDVRFIGICGMGGIGKTTLAKVLYNTLK   74 (216)
Q Consensus        26 ~~~vgR~~~~~~l~~~l~~------------~~~~~~~i~I~G~~GiGKTtL~~~~~~~~~   74 (216)
                      ..++|++..++.+...+..            .......+.|+|++|+|||++++.++..+.
T Consensus        15 ~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~l~   75 (310)
T 1ofh_A           15 QHIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKLAN   75 (310)
T ss_dssp             TTCCSCHHHHHHHHHHHHHHHHTTSSCHHHHHHCCCCCEEEECCTTSSHHHHHHHHHHHHT
T ss_pred             hhcCChHHHHHHHHHHHHHHHhhhhhcccccccCCCceEEEECCCCCCHHHHHHHHHHHhC
Confidence            4589999999998877653            112346889999999999999999998774

>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}

Probab=98.78  E-value=3.1e-08  Score=75.30  Aligned_cols=65  Identities=12%  Similarity=-0.015  Sum_probs=40.0

Q ss_pred             hhhhHHHHHHHhCCceEEEEEeCCCCH------HHHHHhhcCCCCCCCCcEEEEEeCCchhhhccCCcceEEe
Q 039455          117 VHKGINLIRWRLCRKRVLVVLDDVDQL------EQLQALAGNHDWFGFGSRIIITTRDEHVLKGHGVTNIYKV  183 (216)
Q Consensus       117 ~~~~~~~l~~~l~~~~~llvlDd~~~~------~~~~~l~~~~~~~~~~~~il~tsr~~~~~~~~~~~~~~~l  183 (216)
                      .+...-.+.+.+..++-++++|+.-+.      ..+..++........+..+|++||+.+....  ++..+.+
T Consensus       131 GqkqRv~lAraL~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~~~~~~~tviivtH~~~~~~~--~d~v~~l  201 (237)
T 2cbz_A          131 GQKQRVSLARAVYSNADIYLFDDPLSAVDAHVGKHIFENVIGPKGMLKNKTRILVTHSMSYLPQ--VDVIIVM  201 (237)
T ss_dssp             HHHHHHHHHHHHHHCCSEEEEESTTTTSCHHHHHHHHHHTTSTTSTTTTSEEEEECSCSTTGGG--SSEEEEE
T ss_pred             HHHHHHHHHHHHhcCCCEEEEeCcccccCHHHHHHHHHHHHHHHhhcCCCEEEEEecChHHHHh--CCEEEEE
Confidence            344455678888889999999988421      2333333211111247789999999877643  4555444

>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20

Probab=98.73  E-value=6e-07  Score=69.66  Aligned_cols=158  Identities=14%  Similarity=0.154  Sum_probs=85.1

Q ss_pred             CCCcccccccchhHHHHHHHHHhc--C--------CCCeeEEEEEecCCCcHHHHHHHHHHHhcCCCCceEeeccccccc
Q 039455           21 FPSAVDGLVGIASRMEKMNGYLEA--G--------LDDVRFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLANVREVS   90 (216)
Q Consensus        21 ~~~~~~~~vgR~~~~~~l~~~l~~--~--------~~~~~~i~I~G~~GiGKTtL~~~~~~~~~~~~~~~~~~~~~~~~~   90 (216)
                      ++...+.++|.++..+++......  .        -.-.+.++|+||+|+|||||++.+++....  + .+.+. ...  
T Consensus        35 ~~~~~~~i~g~~~~~~~l~~l~~~~~~~~~l~~~~~~~~~gvll~Gp~GtGKTtl~~~i~~~~~~--~-~i~~~-~~~--  108 (278)
T 1iy2_A           35 PKVTFKDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEARV--P-FITAS-GSD--  108 (278)
T ss_dssp             CCCCGGGSSSCHHHHHHHHHHHHHHHCHHHHHHTTCCCCCEEEEECCTTSSHHHHHHHHHHHTTC--C-EEEEE-HHH--
T ss_pred             CCCCHHHhCChHHHHHHHHHHHHHHHCHHHHHHcCCCCCCeEEEECCCcChHHHHHHHHHHHcCC--C-EEEec-HHH--
Confidence            444567899999888877664321  0        011234999999999999999999987642  1 22221 110  


Q ss_pred             cccCchHHHHHHHHHHHhhccccccchhhhHHHHHHHhCCceEEEEEeCCCCH----------------HHHHHhhcCCC
Q 039455           91 VTRGLVPLQEQLLSEVLMERNLIIWDVHKGINLIRWRLCRKRVLVVLDDVDQL----------------EQLQALAGNHD  154 (216)
Q Consensus        91 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~llvlDd~~~~----------------~~~~~l~~~~~  154 (216)
                                 +......      .........+.......+.++++||++..                ..+..++..+.
T Consensus       109 -----------~~~~~~~------~~~~~i~~~~~~~~~~~~~i~~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~~ls  171 (278)
T 1iy2_A          109 -----------FVEMFVG------VGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMD  171 (278)
T ss_dssp             -----------HHHSTTT------HHHHHHHHHHHHHHTSCSEEEEEETHHHHHCC--------CHHHHHHHHHHHHHHT
T ss_pred             -----------HHHHHhh------HHHHHHHHHHHHHHhcCCcEEehhhhHhhhcccccccCCcchHHHHHHHHHHHHHh
Confidence                       0000000      00000111122222345689999998532                11223332222


Q ss_pred             CC--CCCcEEEEEeCCchhhhc-----cCCcceEEecCCChHHHHHHHhhhhcC
Q 039455          155 WF--GFGSRIIITTRDEHVLKG-----HGVTNIYKVRGLDYVEALQLFHLKVSK  201 (216)
Q Consensus       155 ~~--~~~~~il~tsr~~~~~~~-----~~~~~~~~l~~l~~~~~~~ll~~~~~~  201 (216)
                      ..  +....++.++..+.....     ......+.+++.+.++..++++.+...
T Consensus       172 gg~~~~~~i~~a~t~~p~~ld~~l~r~~rf~~~i~i~~p~~~~r~~il~~~~~~  225 (278)
T 1iy2_A          172 GFEKDTAIVVMAATNRPDILDPALLRPGRFDRQIAIDAPDVKGREQILRIHARG  225 (278)
T ss_dssp             TCCTTCCEEEEEEESCTTSSCHHHHSTTSSCCEEECCCCCHHHHHHHHHHHHTT
T ss_pred             CCCCCCCEEEEEecCCchhCCHhHcCCCcCCeEEEeCCcCHHHHHHHHHHHHcc
Confidence            11  122344556665544321     124578999999999999999876533

>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12

Probab=98.72  E-value=3.3e-08  Score=75.91  Aligned_cols=56  Identities=14%  Similarity=0.133  Sum_probs=37.7

Q ss_pred             hhhHHHHHHHhCCceEEEEEeCCCC------HHHHHHhhcCCCCCCCCcEEEEEeCCchhhhcc
Q 039455          118 HKGINLIRWRLCRKRVLVVLDDVDQ------LEQLQALAGNHDWFGFGSRIIITTRDEHVLKGH  175 (216)
Q Consensus       118 ~~~~~~l~~~l~~~~~llvlDd~~~------~~~~~~l~~~~~~~~~~~~il~tsr~~~~~~~~  175 (216)
                      +...-.+...+..++-++++|+.-+      ...+..++..+.  ..+..||++||+.+.+..+
T Consensus       151 q~qRv~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~--~~g~tiiivtHd~~~~~~~  212 (256)
T 1vpl_A          151 MVRKLLIARALMVNPRLAILDEPTSGLDVLNAREVRKILKQAS--QEGLTILVSSHNMLEVEFL  212 (256)
T ss_dssp             HHHHHHHHHHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHHHH--HTTCEEEEEECCHHHHTTT
T ss_pred             HHHHHHHHHHHHcCCCEEEEeCCccccCHHHHHHHHHHHHHHH--hCCCEEEEEcCCHHHHHHH
Confidence            3445568888999999999998742      233444443332  2367899999998776654

>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A

Probab=98.72  E-value=1.2e-07  Score=74.21  Aligned_cols=27  Identities=22%  Similarity=0.411  Sum_probs=23.9

Q ss_pred             CeeEEEEEecCCCcHHHHHHHHHHHhc
Q 039455           48 DVRFIGICGMGGIGKTTLAKVLYNTLK   74 (216)
Q Consensus        48 ~~~~i~I~G~~GiGKTtL~~~~~~~~~   74 (216)
                      ....++++||+|+|||+||+.+++.+.
T Consensus        35 ~p~~lLl~GppGtGKT~la~aiA~~l~   61 (293)
T 3t15_A           35 VPLILGIWGGKGQGKSFQCELVFRKMG   61 (293)
T ss_dssp             CCSEEEEEECTTSCHHHHHHHHHHHHT
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHhC
Confidence            346889999999999999999999874

>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*

Probab=98.72  E-value=2.2e-08  Score=72.27  Aligned_cols=53  Identities=11%  Similarity=0.050  Sum_probs=34.8

Q ss_pred             hHHHHHHHhCCceEEEEEeCCCCH----------------------HHHHHhhcCCCCCCCCcEEEEEeCCchhhhc
Q 039455          120 GINLIRWRLCRKRVLVVLDDVDQL----------------------EQLQALAGNHDWFGFGSRIIITTRDEHVLKG  174 (216)
Q Consensus       120 ~~~~l~~~l~~~~~llvlDd~~~~----------------------~~~~~l~~~~~~~~~~~~il~tsr~~~~~~~  174 (216)
                      ....+...+..++-++++|+..+.                      ..+..++..+.  ..|..+|++||+.+.+..
T Consensus        90 qrv~iAral~~~p~~lllDEPt~~Ld~~~~~R~~~~~~~~vi~~~~~~l~~~l~~l~--~~g~tvi~vtH~~~~~~~  164 (171)
T 4gp7_A           90 PLIEMAKDYHCFPVAVVFNLPEKVCQERNKNRTDRQVEEYVIRKHTQQMKKSIKGLQ--REGFRYVYILNSPEEVEE  164 (171)
T ss_dssp             HHHHHHHHTTCEEEEEEECCCHHHHHHHHHTCSSCCCCHHHHHHHHHHHHHHSTTHH--HHTCSEEEEECSHHHHHH
T ss_pred             HHHHHHHHcCCcEEEEEEeCCHHHHHHHHhcccCCCCCHHHHHHHHHHhhhhhhhHH--hcCCcEEEEeCCHHHhhh
Confidence            344678888899999999987321                      22233333222  347789999999876654

>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}

Probab=98.71  E-value=1.2e-07  Score=83.59  Aligned_cols=148  Identities=14%  Similarity=0.136  Sum_probs=82.8

Q ss_pred             cccccchhHHHHHHHHHhcC-----C--CCeeEEEEEecCCCcHHHHHHHHHHHhcCCCCceEeeccccccccccCchHH
Q 039455           26 DGLVGIASRMEKMNGYLEAG-----L--DDVRFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLANVREVSVTRGLVPL   98 (216)
Q Consensus        26 ~~~vgR~~~~~~l~~~l~~~-----~--~~~~~i~I~G~~GiGKTtL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   98 (216)
                      ..++|.+..++.+...+...     .  .....+.++||+|+|||++|+.+++.........+.+. ++.........  
T Consensus       491 ~~viGq~~a~~~l~~~i~~~~~~~~~~~~p~~~~Ll~Gp~GtGKT~lA~ala~~l~~~~~~~i~i~-~s~~~~~~~~~--  567 (758)
T 3pxi_A          491 SRVIGQDEAVVAVAKAVRRARAGLKDPKRPIGSFIFLGPTGVGKTELARALAESIFGDEESMIRID-MSEYMEKHSTS--  567 (758)
T ss_dssp             TTSCSCHHHHHHHHHHHHHHTTTCSCTTSCSEEEEEESCTTSSHHHHHHHHHHHHHSCTTCEEEEE-GGGGCSSCCCC--
T ss_pred             CcCcChHHHHHHHHHHHHHHHcccCCCCCCceEEEEECCCCCCHHHHHHHHHHHhcCCCcceEEEe-chhcccccccc--
Confidence            46899999998888776521     1  11237999999999999999999987643322233333 22222111111  


Q ss_pred             HHHHHHHHHhhccccccchhhhHHHHHHHhCCceEEEEEeCCCCH--HHHHHhhcC-----CCC------CCCCcEEEEE
Q 039455           99 QEQLLSEVLMERNLIIWDVHKGINLIRWRLCRKRVLVVLDDVDQL--EQLQALAGN-----HDW------FGFGSRIIIT  165 (216)
Q Consensus        99 ~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~llvlDd~~~~--~~~~~l~~~-----~~~------~~~~~~il~t  165 (216)
                                        .......+..   ....+|+||+++..  +....++..     +..      ...+..||+|
T Consensus       568 ------------------~~~l~~~~~~---~~~~vl~lDEi~~~~~~~~~~Ll~~le~g~~~~~~g~~~~~~~~~iI~t  626 (758)
T 3pxi_A          568 ------------------GGQLTEKVRR---KPYSVVLLDAIEKAHPDVFNILLQVLEDGRLTDSKGRTVDFRNTILIMT  626 (758)
T ss_dssp             ---------------------CHHHHHH---CSSSEEEEECGGGSCHHHHHHHHHHHHHSBCC-----CCBCTTCEEEEE
T ss_pred             ------------------cchhhHHHHh---CCCeEEEEeCccccCHHHHHHHHHHhccCeEEcCCCCEeccCCeEEEEe
Confidence                              0001111111   12349999999743  222222211     111      1235678888


Q ss_pred             eCCc-----------------hhhhccCCcceEEecCCChHHHHHHHhhhh
Q 039455          166 TRDE-----------------HVLKGHGVTNIYKVRGLDYVEALQLFHLKV  199 (216)
Q Consensus       166 sr~~-----------------~~~~~~~~~~~~~l~~l~~~~~~~ll~~~~  199 (216)
                      |...                 ++.++  .+..+.+.|++.++..+++....
T Consensus       627 tn~~~~~~~~~~~~~~~~f~p~l~~R--l~~~i~~~~l~~~~~~~i~~~~l  675 (758)
T 3pxi_A          627 SNVGASEKDKVMGELKRAFRPEFINR--IDEIIVFHSLEKKHLTEIVSLMS  675 (758)
T ss_dssp             ESSSTTCCHHHHHHHHHHSCHHHHTT--SSEEEECC--CHHHHHHHHHHHH
T ss_pred             CCCChhhHHHHHHHHHhhCCHHHHhh--CCeEEecCCCCHHHHHHHHHHHH
Confidence            8731                 12222  34689999999999888886543

>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A

Probab=98.71  E-value=4.9e-08  Score=73.56  Aligned_cols=61  Identities=11%  Similarity=0.168  Sum_probs=39.9

Q ss_pred             hhHHHHHHHhCCceEEEEEeCCCC------HHHHHHhhcCCCCCCCCcEEEEEeCCchhhhccCCcceEEe
Q 039455          119 KGINLIRWRLCRKRVLVVLDDVDQ------LEQLQALAGNHDWFGFGSRIIITTRDEHVLKGHGVTNIYKV  183 (216)
Q Consensus       119 ~~~~~l~~~l~~~~~llvlDd~~~------~~~~~~l~~~~~~~~~~~~il~tsr~~~~~~~~~~~~~~~l  183 (216)
                      ...-.+...+..++-++++|+.-+      ...+..++..+.  ..+..||++||+.+.. .+ ++..+.+
T Consensus       146 ~qrv~laral~~~p~lllLDEPt~~LD~~~~~~~~~~l~~l~--~~g~tvi~vtHd~~~~-~~-~d~v~~l  212 (224)
T 2pcj_A          146 QQRVAIARALANEPILLFADEPTGNLDSANTKRVMDIFLKIN--EGGTSIVMVTHERELA-EL-THRTLEM  212 (224)
T ss_dssp             HHHHHHHHHTTTCCSEEEEESTTTTCCHHHHHHHHHHHHHHH--HTTCEEEEECSCHHHH-TT-SSEEEEE
T ss_pred             HHHHHHHHHHHcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHH--HCCCEEEEEcCCHHHH-Hh-CCEEEEE
Confidence            344568888889999999998732      233334443332  2367899999998765 33 5555554

>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}

Probab=98.71  E-value=1.7e-08  Score=77.45  Aligned_cols=127  Identities=14%  Similarity=0.159  Sum_probs=67.4

Q ss_pred             CeeEEEEEecCCCcHHHHHHHHHHHhcCCCC------ceEeeccccccccccC-------------------ch---HHH
Q 039455           48 DVRFIGICGMGGIGKTTLAKVLYNTLKDQFE------ASSFLANVREVSVTRG-------------------LV---PLQ   99 (216)
Q Consensus        48 ~~~~i~I~G~~GiGKTtL~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~-------------------~~---~~~   99 (216)
                      .+.+++|.|++|+|||||++.+++.+.....      .+.|+.-.........                   ..   ...
T Consensus        30 ~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~~~i~~v~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~  109 (253)
T 2nq2_C           30 KGDILAVLGQNGCGKSTLLDLLLGIHRPIQGKIEVYQSIGFVPQFFSSPFAYSVLDIVLMGRSTHINTFAKPKSHDYQVA  109 (253)
T ss_dssp             TTCEEEEECCSSSSHHHHHHHHTTSSCCSEEEEEECSCEEEECSCCCCSSCCBHHHHHHGGGGGGSCTTCCCCHHHHHHH
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEEeccEEEEcCCCccCCCCCHHHHHHHhhhhhcccccCCCHHHHHHH
Confidence            4579999999999999999999985432211      1112210000000000                   00   111


Q ss_pred             HHHHHHHHhh-----ccccccchhhhHHHHHHHhCCceEEEEEeCCCC------HHHHHHhhcCCCCCCCCcEEEEEeCC
Q 039455          100 EQLLSEVLME-----RNLIIWDVHKGINLIRWRLCRKRVLVVLDDVDQ------LEQLQALAGNHDWFGFGSRIIITTRD  168 (216)
Q Consensus       100 ~~l~~~~~~~-----~~~~~~~~~~~~~~l~~~l~~~~~llvlDd~~~------~~~~~~l~~~~~~~~~~~~il~tsr~  168 (216)
                      ..++..+...     .....+..+...-.+...+..++-++++|+.-+      ...+..++..+.. ..+..||++||+
T Consensus       110 ~~~l~~~~l~~~~~~~~~~LSgGq~qrv~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~-~~g~tvi~vtHd  188 (253)
T 2nq2_C          110 MQALDYLNLTHLAKREFTSLSGGQRQLILIARAIASECKLILLDEPTSALDLANQDIVLSLLIDLAQ-SQNMTVVFTTHQ  188 (253)
T ss_dssp             HHHHHHTTCGGGTTSBGGGSCHHHHHHHHHHHHHHTTCSEEEESSSSTTSCHHHHHHHHHHHHHHHH-TSCCEEEEEESC
T ss_pred             HHHHHHcCChHHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHH-hcCCEEEEEecC
Confidence            2222222111     011122233445568888889999999998742      2333444433320 126789999999


Q ss_pred             chhhhcc
Q 039455          169 EHVLKGH  175 (216)
Q Consensus       169 ~~~~~~~  175 (216)
                      .+.+..+
T Consensus       189 ~~~~~~~  195 (253)
T 2nq2_C          189 PNQVVAI  195 (253)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHh
Confidence            8766543

>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A

Probab=98.70  E-value=1.6e-07  Score=70.92  Aligned_cols=62  Identities=13%  Similarity=0.067  Sum_probs=39.3

Q ss_pred             hhhHHHHHHHhCCceEEEEEeCCCCH------HHHHHh-hcCCCCCCCCcEEEEEeCCchhhhccCCcceEEec
Q 039455          118 HKGINLIRWRLCRKRVLVVLDDVDQL------EQLQAL-AGNHDWFGFGSRIIITTRDEHVLKGHGVTNIYKVR  184 (216)
Q Consensus       118 ~~~~~~l~~~l~~~~~llvlDd~~~~------~~~~~l-~~~~~~~~~~~~il~tsr~~~~~~~~~~~~~~~l~  184 (216)
                      +...-.+.+.+..++-++++|+.-+.      ..+..+ ...+   ..+..+|++||+.+....  ++..+.+.
T Consensus       135 qkqrv~lAral~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~---~~~~tvi~vtH~~~~~~~--~d~v~~l~  203 (229)
T 2pze_A          135 QRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKL---MANKTRILVTSKMEHLKK--ADKILILH  203 (229)
T ss_dssp             HHHHHHHHHHHHSCCSEEEEESTTTTSCHHHHHHHHHHCCCCC---TTTSEEEEECCCHHHHHH--CSEEEEEE
T ss_pred             HHHHHHHHHHHhcCCCEEEEECcccCCCHHHHHHHHHHHHHHh---hCCCEEEEEcCChHHHHh--CCEEEEEE
Confidence            34455678888899999999988422      223332 2222   236789999999876643  45555443

>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}

Probab=98.70  E-value=9.3e-07  Score=74.02  Aligned_cols=153  Identities=15%  Similarity=0.161  Sum_probs=86.9

Q ss_pred             CCcccccccchhHHHHHHHHHh---cC-------CCCeeEEEEEecCCCcHHHHHHHHHHHhcCCCCceEeecccccccc
Q 039455           22 PSAVDGLVGIASRMEKMNGYLE---AG-------LDDVRFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLANVREVSV   91 (216)
Q Consensus        22 ~~~~~~~vgR~~~~~~l~~~l~---~~-------~~~~~~i~I~G~~GiGKTtL~~~~~~~~~~~~~~~~~~~~~~~~~~   91 (216)
                      +..-..++|.+....++.....   ..       ..-.+.++|+||+|+|||+|++.+++....  + .+.+. ..... 
T Consensus        27 ~~~f~dv~G~~~~k~~l~~lv~~l~~~~~~~~lg~~ip~GvLL~GppGtGKTtLaraIa~~~~~--~-~i~i~-g~~~~-  101 (499)
T 2dhr_A           27 KVTFKDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEARV--P-FITAS-GSDFV-  101 (499)
T ss_dssp             CCCTTSSCSCHHHHHHHHHHHHHHHCGGGTTTTSCCCCSEEEEECSSSSSHHHHHHHHHHHTTC--C-EEEEE-GGGGT-
T ss_pred             CCCHHHcCCcHHHHHHHHHHHHHhhchhhhhhccCCCCceEEEECCCCCCHHHHHHHHHHHhCC--C-EEEEe-hhHHH-
Confidence            3445679999998888776543   11       011235999999999999999999987642  2 22222 11110 


Q ss_pred             ccCchHHHHHHHHHHHhhccccccchhhhHHHHHHHhC----CceEEEEEeCCCCH----------------HHHHHhhc
Q 039455           92 TRGLVPLQEQLLSEVLMERNLIIWDVHKGINLIRWRLC----RKRVLVVLDDVDQL----------------EQLQALAG  151 (216)
Q Consensus        92 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~----~~~~llvlDd~~~~----------------~~~~~l~~  151 (216)
                       ....                     ......+...++    ..+.++++||++..                ..+..++.
T Consensus       102 -~~~~---------------------g~~~~~v~~lfq~a~~~~p~il~IDEId~l~~~r~~~~~~~~~e~~~~l~~LL~  159 (499)
T 2dhr_A          102 -EMFV---------------------GVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLV  159 (499)
T ss_dssp             -SSCT---------------------THHHHHHHHHTTTSSSSSSCEEEEECGGGTCCCSSSSTTTSSHHHHHHHHHHHH
T ss_pred             -Hhhh---------------------hhHHHHHHHHHHHHHhcCCCEEEEehHHHHHHhhccCcCCCcHHHHHHHHHHHH
Confidence             0000                     001112222232    24679999998532                12233332


Q ss_pred             CCCC--CCCCcEEEEEeCCchhhhc-----cCCcceEEecCCChHHHHHHHhhhhcC
Q 039455          152 NHDW--FGFGSRIIITTRDEHVLKG-----HGVTNIYKVRGLDYVEALQLFHLKVSK  201 (216)
Q Consensus       152 ~~~~--~~~~~~il~tsr~~~~~~~-----~~~~~~~~l~~l~~~~~~~ll~~~~~~  201 (216)
                      .+.-  ......++.+|+.+..+..     ...+..+.+.+.+.++..++|+.+...
T Consensus       160 ~Ldg~~~~~~viviAatn~p~~LD~aLlr~gRfdr~i~i~~Pd~~~R~~IL~~~~~~  216 (499)
T 2dhr_A          160 EMDGFEKDTAIVVMAATNRPDILDPALLRPGRFDRQIAIDAPDVKGREQILRIHARG  216 (499)
T ss_dssp             HGGGCCSSCCCEEEECCSCGGGSCTTTSSTTSSCCEEECCCCCHHHHHHHHHHTTSS
T ss_pred             HhcccccCccEEEEEecCChhhcCcccccccccceEEecCCCCHHHHHHHHHHHHhc
Confidence            2221  1223445566666654321     124568999999999999999876533

>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A

Probab=98.69  E-value=2.4e-07  Score=78.61  Aligned_cols=155  Identities=17%  Similarity=0.179  Sum_probs=80.2

Q ss_pred             ccccchhHHHHHHHHHh----cCCCCeeEEEEEecCCCcHHHHHHHHHHHhcCCCCceEeeccccccccccCchHHHHHH
Q 039455           27 GLVGIASRMEKMNGYLE----AGLDDVRFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLANVREVSVTRGLVPLQEQL  102 (216)
Q Consensus        27 ~~vgR~~~~~~l~~~l~----~~~~~~~~i~I~G~~GiGKTtL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  102 (216)
                      ..+|-++..+.+...+.    .....+..++|+||+|+|||||++.++......+..   +. +................
T Consensus        82 di~G~~~vk~~i~~~~~l~~~~~~~~g~~vll~Gp~GtGKTtlar~ia~~l~~~~~~---i~-~~~~~~~~~~~g~~~~~  157 (543)
T 3m6a_A           82 EHHGLEKVKERILEYLAVQKLTKSLKGPILCLAGPPGVGKTSLAKSIAKSLGRKFVR---IS-LGGVRDESEIRGHRRTY  157 (543)
T ss_dssp             HCSSCHHHHHHHHHHHHHHHHSSSCCSCEEEEESSSSSSHHHHHHHHHHHHTCEEEE---EC-CCC--------------
T ss_pred             HhccHHHHHHHHHHHHHHHHhcccCCCCEEEEECCCCCCHHHHHHHHHHhcCCCeEE---EE-ecccchhhhhhhHHHHH
Confidence            36888877777765433    112356799999999999999999999877433211   11 11100000000000000


Q ss_pred             HHHHHhhccccccchhhhHHHHHHHhCCceEEEEEeCCCCHHH------HHHhhcCCCC--------CC-------CCcE
Q 039455          103 LSEVLMERNLIIWDVHKGINLIRWRLCRKRVLVVLDDVDQLEQ------LQALAGNHDW--------FG-------FGSR  161 (216)
Q Consensus       103 ~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~llvlDd~~~~~~------~~~l~~~~~~--------~~-------~~~~  161 (216)
                      .          ..........+......++ +++||+++....      ...++..+..        ..       ....
T Consensus       158 i----------g~~~~~~~~~~~~a~~~~~-vl~lDEid~l~~~~~~~~~~~LL~~ld~~~~~~~~~~~~~~~~~~~~v~  226 (543)
T 3m6a_A          158 V----------GAMPGRIIQGMKKAGKLNP-VFLLDEIDKMSSDFRGDPSSAMLEVLDPEQNSSFSDHYIEETFDLSKVL  226 (543)
T ss_dssp             ----------------CHHHHHHTTCSSSE-EEEEEESSSCC---------CCGGGTCTTTTTBCCCSSSCCCCBCSSCE
T ss_pred             h----------ccCchHHHHHHHHhhccCC-EEEEhhhhhhhhhhccCHHHHHHHHHhhhhcceeecccCCeeecccceE
Confidence            0          0011112222333223344 888999975421      1333322211        00       2345


Q ss_pred             EEEEeCCch-----hhhccCCcceEEecCCChHHHHHHHhhhh
Q 039455          162 IIITTRDEH-----VLKGHGVTNIYKVRGLDYVEALQLFHLKV  199 (216)
Q Consensus       162 il~tsr~~~-----~~~~~~~~~~~~l~~l~~~~~~~ll~~~~  199 (216)
                      +|.||....     +.++   ...+.+++++.++..+++..+.
T Consensus       227 iI~ttN~~~~l~~aL~~R---~~vi~~~~~~~~e~~~Il~~~l  266 (543)
T 3m6a_A          227 FIATANNLATIPGPLRDR---MEIINIAGYTEIEKLEIVKDHL  266 (543)
T ss_dssp             EEEECSSTTTSCHHHHHH---EEEEECCCCCHHHHHHHHHHTH
T ss_pred             EEeccCccccCCHHHHhh---cceeeeCCCCHHHHHHHHHHHH
Confidence            666666543     2333   2579999999999999988764

>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*

Probab=98.68  E-value=3.4e-08  Score=76.13  Aligned_cols=62  Identities=8%  Similarity=0.119  Sum_probs=39.8

Q ss_pred             hhHHHHHHHhCCceEEEEEeCCCC------HHHHHHhhcCCCCCCCCcEEEEEeCCchhhhccCCcceEEe
Q 039455          119 KGINLIRWRLCRKRVLVVLDDVDQ------LEQLQALAGNHDWFGFGSRIIITTRDEHVLKGHGVTNIYKV  183 (216)
Q Consensus       119 ~~~~~l~~~l~~~~~llvlDd~~~------~~~~~~l~~~~~~~~~~~~il~tsr~~~~~~~~~~~~~~~l  183 (216)
                      ...-.+...+..++-+|++|+.-+      ...+..++..+.  ..+..||++||+.+.+..+ ++..+.+
T Consensus       165 kQRv~lAraL~~~p~lllLDEPts~LD~~~~~~~~~~l~~l~--~~g~tvi~vtHd~~~~~~~-~d~v~~l  232 (263)
T 2olj_A          165 AQRVAIARALAMEPKIMLFDEPTSALDPEMVGEVLSVMKQLA--NEGMTMVVVTHEMGFAREV-GDRVLFM  232 (263)
T ss_dssp             HHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHH--HTTCEEEEECSCHHHHHHH-CSEEEEE
T ss_pred             HHHHHHHHHHHCCCCEEEEeCCcccCCHHHHHHHHHHHHHHH--hCCCEEEEEcCCHHHHHHh-CCEEEEE
Confidence            344468888899999999998732      233444443332  2367899999998776554 3343333

>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C

Probab=98.68  E-value=7.7e-08  Score=77.26  Aligned_cols=58  Identities=17%  Similarity=0.190  Sum_probs=38.9

Q ss_pred             hhhhHHHHHHHhCCceEEEEEeCCCCH------HHHHHhhcCCCCCCCCcEEEEEeCCchhhhcc
Q 039455          117 VHKGINLIRWRLCRKRVLVVLDDVDQL------EQLQALAGNHDWFGFGSRIIITTRDEHVLKGH  175 (216)
Q Consensus       117 ~~~~~~~l~~~l~~~~~llvlDd~~~~------~~~~~l~~~~~~~~~~~~il~tsr~~~~~~~~  175 (216)
                      .+.....+.+.+..+|-+|++|+.-+.      ..+..++..+. ...+..||++||+.+.+..+
T Consensus       167 GqkQRVaIArAL~~~P~lLLlDEPTs~LD~~~~~~i~~lL~~l~-~~~g~Tii~vTHdl~~~~~~  230 (366)
T 3tui_C          167 GQKQRVAIARALASNPKVLLCDQATSALDPATTRSILELLKDIN-RRLGLTILLITHEMDVVKRI  230 (366)
T ss_dssp             HHHHHHHHHHHTTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHH-HHSCCEEEEEESCHHHHHHH
T ss_pred             HHHHHHHHHHHHhcCCCEEEEECCCccCCHHHHHHHHHHHHHHH-HhCCCEEEEEecCHHHHHHh
Confidence            344455789999999999999987422      33333333321 02378899999998776654

>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*

Probab=98.65  E-value=5.1e-08  Score=73.99  Aligned_cols=63  Identities=16%  Similarity=0.158  Sum_probs=40.2

Q ss_pred             hhhHHHHHHHhCCceEEEEEeCCCCH------HHHHHhhcCCCCCCCCcEEEEEeCCchhhhccCCcceEEe
Q 039455          118 HKGINLIRWRLCRKRVLVVLDDVDQL------EQLQALAGNHDWFGFGSRIIITTRDEHVLKGHGVTNIYKV  183 (216)
Q Consensus       118 ~~~~~~l~~~l~~~~~llvlDd~~~~------~~~~~l~~~~~~~~~~~~il~tsr~~~~~~~~~~~~~~~l  183 (216)
                      +...-.+.+.+..++-+|++|+.-+.      ..+..++..+.. ..+..||++||+.+.. .+ ++..+.+
T Consensus       150 q~QRv~iAral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~-~~g~tvi~vtHd~~~~-~~-~d~i~~l  218 (235)
T 3tif_A          150 QQQRVAIARALANNPPIILADQPTWALDSKTGEKIMQLLKKLNE-EDGKTVVVVTHDINVA-RF-GERIIYL  218 (235)
T ss_dssp             HHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHH-HHCCEEEEECSCHHHH-TT-SSEEEEE
T ss_pred             HHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHH-HcCCEEEEEcCCHHHH-Hh-CCEEEEE
Confidence            34455688899999999999987421      333333333220 1368899999998865 33 5555544

>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12

Probab=98.64  E-value=4e-08  Score=75.80  Aligned_cols=54  Identities=9%  Similarity=0.125  Sum_probs=36.0

Q ss_pred             hHHHHHHHhCCceEEEEEeCCCC------HHHHHHhhcCCCCCCCCcEEEEEeCCchhhhcc
Q 039455          120 GINLIRWRLCRKRVLVVLDDVDQ------LEQLQALAGNHDWFGFGSRIIITTRDEHVLKGH  175 (216)
Q Consensus       120 ~~~~l~~~l~~~~~llvlDd~~~------~~~~~~l~~~~~~~~~~~~il~tsr~~~~~~~~  175 (216)
                      ....+...+..++-+|++|+.-+      ...+..++..+.  ..+..||++||+.+.+..+
T Consensus       160 qRv~lAraL~~~p~lllLDEPts~LD~~~~~~~~~~l~~l~--~~g~tvi~vtHd~~~~~~~  219 (262)
T 1b0u_A          160 QRVSIARALAMEPDVLLFDEPTSALDPELVGEVLRIMQQLA--EEGKTMVVVTHEMGFARHV  219 (262)
T ss_dssp             HHHHHHHHHHTCCSEEEEESTTTTSCHHHHHHHHHHHHHHH--HTTCCEEEECSCHHHHHHH
T ss_pred             HHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHH--hCCCEEEEEeCCHHHHHHh
Confidence            34467888888999999998732      233444443332  2367899999998776554

>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12

Probab=98.64  E-value=4.1e-08  Score=74.72  Aligned_cols=57  Identities=11%  Similarity=0.135  Sum_probs=37.3

Q ss_pred             hhhhHHHHHHHhCCceEEEEEeCCCC------HHHHHHhhcCCCCCCCCcEEEEEeCCchhhhcc
Q 039455          117 VHKGINLIRWRLCRKRVLVVLDDVDQ------LEQLQALAGNHDWFGFGSRIIITTRDEHVLKGH  175 (216)
Q Consensus       117 ~~~~~~~l~~~l~~~~~llvlDd~~~------~~~~~~l~~~~~~~~~~~~il~tsr~~~~~~~~  175 (216)
                      .+...-.+...+..++-++++|+.-+      ...+..++..+.  ..+..||++||+.+.+..+
T Consensus       143 Gq~qrv~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~~~--~~g~tvi~vtHd~~~~~~~  205 (240)
T 1ji0_A          143 GEQQMLAIGRALMSRPKLLMMDEPSLGLAPILVSEVFEVIQKIN--QEGTTILLVEQNALGALKV  205 (240)
T ss_dssp             HHHHHHHHHHHHTTCCSEEEEECTTTTCCHHHHHHHHHHHHHHH--HTTCCEEEEESCHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHH--HCCCEEEEEecCHHHHHHh
Confidence            34445568888999999999998732      233444443332  2467899999998665443

>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12

Probab=98.62  E-value=6.1e-08  Score=72.45  Aligned_cols=55  Identities=18%  Similarity=0.050  Sum_probs=37.0

Q ss_pred             hhhHHHHHHHhCCceEEEEEeCC------CCHHHHHHhhcCCCCCCCCcEEEEEeCCchhhhc
Q 039455          118 HKGINLIRWRLCRKRVLVVLDDV------DQLEQLQALAGNHDWFGFGSRIIITTRDEHVLKG  174 (216)
Q Consensus       118 ~~~~~~l~~~l~~~~~llvlDd~------~~~~~~~~l~~~~~~~~~~~~il~tsr~~~~~~~  174 (216)
                      +...-.+...+..++-++++|+.      .....+..++..+.  ..+..||++||+.+.+..
T Consensus       138 qkqrv~laraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~~~--~~g~tiiivtHd~~~~~~  198 (214)
T 1sgw_A          138 TIRRVQLASTLLVNAEIYVLDDPVVAIDEDSKHKVLKSILEIL--KEKGIVIISSREELSYCD  198 (214)
T ss_dssp             HHHHHHHHHHTTSCCSEEEEESTTTTSCTTTHHHHHHHHHHHH--HHHSEEEEEESSCCTTSS
T ss_pred             HHHHHHHHHHHHhCCCEEEEECCCcCCCHHHHHHHHHHHHHHH--hCCCEEEEEeCCHHHHHH
Confidence            33444678888899999999976      23445555544332  235789999999866544

>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}

Probab=98.62  E-value=1.7e-06  Score=67.06  Aligned_cols=152  Identities=16%  Similarity=0.082  Sum_probs=81.0

Q ss_pred             cccccccchhHHHHHHHHHh----------c-CCCCeeEEEEEecCCCcHHHHHHHHHHHhcCCCCceEeeccccccccc
Q 039455           24 AVDGLVGIASRMEKMNGYLE----------A-GLDDVRFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLANVREVSVT   92 (216)
Q Consensus        24 ~~~~~vgR~~~~~~l~~~l~----------~-~~~~~~~i~I~G~~GiGKTtL~~~~~~~~~~~~~~~~~~~~~~~~~~~   92 (216)
                      ....+.|-++..++|...+.          . .-.-.+-++|+||+|+|||||++.+++....   ..+++. ..... .
T Consensus         8 ~~~di~g~~~~~~~l~~~i~~~~~~~~~l~~~~l~~~~GvlL~Gp~GtGKTtLakala~~~~~---~~i~i~-g~~l~-~   82 (274)
T 2x8a_A            8 TWADIGALEDIREELTMAILAPVRNPDQFKALGLVTPAGVLLAGPPGCGKTLLAKAVANESGL---NFISVK-GPELL-N   82 (274)
T ss_dssp             ----CCHHHHHHHHHHHHHTHHHHSHHHHHHTTCCCCSEEEEESSTTSCHHHHHHHHHHHTTC---EEEEEE-TTTTC-S
T ss_pred             CHHHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCCeEEEECCCCCcHHHHHHHHHHHcCC---CEEEEE-cHHHH-h
Confidence            34567788877777766432          0 1111233999999999999999999987643   223332 11100 0


Q ss_pred             cCchHHHHHHHHHHHhhccccccchhhhHHHHHH-HhCCceEEEEEeCCCCHH-------------HHHHhhcCCCC--C
Q 039455           93 RGLVPLQEQLLSEVLMERNLIIWDVHKGINLIRW-RLCRKRVLVVLDDVDQLE-------------QLQALAGNHDW--F  156 (216)
Q Consensus        93 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~-~l~~~~~llvlDd~~~~~-------------~~~~l~~~~~~--~  156 (216)
                      ...... ..                  ....+.+ .....+.++++|+++...             ....++..+.-  .
T Consensus        83 ~~~~~~-~~------------------~i~~vf~~a~~~~p~i~~~Deid~~~~~r~~~~~~~~~~~~~~~l~~Lsgg~~  143 (274)
T 2x8a_A           83 MYVGES-ER------------------AVRQVFQRAKNSAPCVIFFDEVDALCPRRSDRETGASVRVVNQLLTEMDGLEA  143 (274)
T ss_dssp             STTHHH-HH------------------HHHHHHHHHHHTCSEEEEEETCTTTCC---------CTTHHHHHHHHHHTCCS
T ss_pred             hhhhHH-HH------------------HHHHHHHHHHhcCCCeEeeehhhhhhcccCCCcchHHHHHHHHHHHhhhcccc
Confidence            000000 00                  1111111 112457899999986431             11222211110  1


Q ss_pred             CCCcEEEEEeCCchhhhcc-----CCcceEEecCCChHHHHHHHhhhh
Q 039455          157 GFGSRIIITTRDEHVLKGH-----GVTNIYKVRGLDYVEALQLFHLKV  199 (216)
Q Consensus       157 ~~~~~il~tsr~~~~~~~~-----~~~~~~~l~~l~~~~~~~ll~~~~  199 (216)
                      .....++.+|..+..+...     ..+..+.++..+.++..++|+...
T Consensus       144 ~~~~i~ia~tn~p~~LD~al~r~gRfd~~i~~~~P~~~~r~~il~~~~  191 (274)
T 2x8a_A          144 RQQVFIMAATNRPDIIDPAILRPGRLDKTLFVGLPPPADRLAILKTIT  191 (274)
T ss_dssp             TTCEEEEEEESCGGGSCHHHHSTTSSCEEEECCSCCHHHHHHHHHHHT
T ss_pred             cCCEEEEeecCChhhCCHhhcCcccCCeEEEeCCcCHHHHHHHHHHHH
Confidence            2234456677766553321     356789999999999999998765

>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}

Probab=98.62  E-value=1.6e-07  Score=72.42  Aligned_cols=59  Identities=14%  Similarity=0.053  Sum_probs=39.0

Q ss_pred             hhHHHHHHHhCCceEEEEEeCCCC------HHHHHHhhcCCCCCCCCcEEEEEeCCchhhhccCCc-ceEEe
Q 039455          119 KGINLIRWRLCRKRVLVVLDDVDQ------LEQLQALAGNHDWFGFGSRIIITTRDEHVLKGHGVT-NIYKV  183 (216)
Q Consensus       119 ~~~~~l~~~l~~~~~llvlDd~~~------~~~~~~l~~~~~~~~~~~~il~tsr~~~~~~~~~~~-~~~~l  183 (216)
                      ...-.+...+..++-++++|+.-+      ...+..++..+.   .  .+|++||+.+.+..+ ++ ..+.+
T Consensus       134 kqRv~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~L~~~~---~--tviivtHd~~~~~~~-~d~~i~~l  199 (263)
T 2pjz_A          134 SVLVRTSLALASQPEIVGLDEPFENVDAARRHVISRYIKEYG---K--EGILVTHELDMLNLY-KEYKAYFL  199 (263)
T ss_dssp             HHHHHHHHHHHTCCSEEEEECTTTTCCHHHHHHHHHHHHHSC---S--EEEEEESCGGGGGGC-TTSEEEEE
T ss_pred             HHHHHHHHHHHhCCCEEEEECCccccCHHHHHHHHHHHHHhc---C--cEEEEEcCHHHHHHh-cCceEEEE
Confidence            344467888888999999998732      234444444443   2  899999998776554 44 54544

>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}

Probab=98.62  E-value=1e-07  Score=73.68  Aligned_cols=56  Identities=16%  Similarity=0.227  Sum_probs=37.3

Q ss_pred             hhhHHHHHHHhCCceEEEEEeCCCC------HHHHHHhhcCCCCCCCCcEEEEEeCCchhhhcc
Q 039455          118 HKGINLIRWRLCRKRVLVVLDDVDQ------LEQLQALAGNHDWFGFGSRIIITTRDEHVLKGH  175 (216)
Q Consensus       118 ~~~~~~l~~~l~~~~~llvlDd~~~------~~~~~~l~~~~~~~~~~~~il~tsr~~~~~~~~  175 (216)
                      +...-.+...+..++-++++|+.-+      ...+..++..+.  ..+..||++||+.+.+..+
T Consensus       143 q~qRv~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~--~~g~tii~vtHd~~~~~~~  204 (266)
T 2yz2_A          143 EKRRVAIASVIVHEPDILILDEPLVGLDREGKTDLLRIVEKWK--TLGKTVILISHDIETVINH  204 (266)
T ss_dssp             HHHHHHHHHHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHHHH--HTTCEEEEECSCCTTTGGG
T ss_pred             HHHHHHHHHHHHcCCCEEEEcCccccCCHHHHHHHHHHHHHHH--HcCCEEEEEeCCHHHHHHh
Confidence            3345568888999999999998742      233444443332  2367899999998766543

>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*

Probab=98.61  E-value=2.8e-07  Score=72.04  Aligned_cols=61  Identities=13%  Similarity=0.065  Sum_probs=38.4

Q ss_pred             hhhHHHHHHHhCCceEEEEEeCCCCH------HHHHHh-hcCCCCCCCCcEEEEEeCCchhhhccCCcceEEe
Q 039455          118 HKGINLIRWRLCRKRVLVVLDDVDQL------EQLQAL-AGNHDWFGFGSRIIITTRDEHVLKGHGVTNIYKV  183 (216)
Q Consensus       118 ~~~~~~l~~~l~~~~~llvlDd~~~~------~~~~~l-~~~~~~~~~~~~il~tsr~~~~~~~~~~~~~~~l  183 (216)
                      +...-.+.+.+..++-++++|+.-+.      ..+..+ ...+   ..+..||++||+.+....  ++..+.+
T Consensus       164 q~QRv~lAraL~~~p~lllLDEPts~LD~~~~~~i~~~ll~~~---~~~~tviivtHd~~~~~~--~d~i~~l  231 (290)
T 2bbs_A          164 QRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKL---MANKTRILVTSKMEHLKK--ADKILIL  231 (290)
T ss_dssp             HHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHCCCCC---TTTSEEEEECCCHHHHHH--SSEEEEE
T ss_pred             HHHHHHHHHHHHCCCCEEEEECCcccCCHHHHHHHHHHHHHHh---hCCCEEEEEecCHHHHHc--CCEEEEE
Confidence            34455678888889999999988422      223332 2222   246789999999876643  4444433

>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}

Probab=98.60  E-value=7.1e-08  Score=74.82  Aligned_cols=64  Identities=20%  Similarity=0.246  Sum_probs=40.6

Q ss_pred             hhhHHHHHHHhCCceEEEEEeCCCC------HHHHHHhhcCCCCCCCCcEEEEEeCCchhhhccCCcceEEe
Q 039455          118 HKGINLIRWRLCRKRVLVVLDDVDQ------LEQLQALAGNHDWFGFGSRIIITTRDEHVLKGHGVTNIYKV  183 (216)
Q Consensus       118 ~~~~~~l~~~l~~~~~llvlDd~~~------~~~~~~l~~~~~~~~~~~~il~tsr~~~~~~~~~~~~~~~l  183 (216)
                      +...-.+...+..++-+|++|+.-+      ...+..++..+.. ..+..||++||+.+.+..+ ++..+-+
T Consensus       148 qkQRv~iAraL~~~P~lLlLDEPts~LD~~~~~~i~~~l~~l~~-~~g~tvi~vtHdl~~~~~~-~drv~~l  217 (275)
T 3gfo_A          148 QKKRVAIAGVLVMEPKVLILDEPTAGLDPMGVSEIMKLLVEMQK-ELGITIIIATHDIDIVPLY-CDNVFVM  217 (275)
T ss_dssp             HHHHHHHHHHHTTCCSEEEEECTTTTCCHHHHHHHHHHHHHHHH-HHCCEEEEEESCCSSGGGG-CSEEEEE
T ss_pred             HHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHHh-hCCCEEEEEecCHHHHHHh-CCEEEEE
Confidence            3445568889999999999998732      1333333333210 1267899999998776654 3444333

>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*

Probab=98.59  E-value=6.4e-08  Score=74.43  Aligned_cols=55  Identities=11%  Similarity=0.075  Sum_probs=36.5

Q ss_pred             hhHHHHHHHhCCceEEEEEeCCCC------HHHHHHhhcCCCCCCCCcEEEEEeCCchhhhcc
Q 039455          119 KGINLIRWRLCRKRVLVVLDDVDQ------LEQLQALAGNHDWFGFGSRIIITTRDEHVLKGH  175 (216)
Q Consensus       119 ~~~~~l~~~l~~~~~llvlDd~~~------~~~~~~l~~~~~~~~~~~~il~tsr~~~~~~~~  175 (216)
                      ...-.+...+..++-+|++|+.-+      ...+..++..+.  ..+..||++||+.+.+..+
T Consensus       159 kQrv~iAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~--~~g~tvi~vtHd~~~~~~~  219 (257)
T 1g6h_A          159 MKLVEIGRALMTNPKMIVMDEPIAGVAPGLAHDIFNHVLELK--AKGITFLIIEHRLDIVLNY  219 (257)
T ss_dssp             HHHHHHHHHHHTCCSEEEEESTTTTCCHHHHHHHHHHHHHHH--HTTCEEEEECSCCSTTGGG
T ss_pred             HHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHH--HCCCEEEEEecCHHHHHHh
Confidence            344467788888899999998732      233444443332  2367899999998766554

>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}

Probab=98.58  E-value=1.1e-07  Score=76.25  Aligned_cols=58  Identities=10%  Similarity=0.095  Sum_probs=37.3

Q ss_pred             hhhhHHHHHHHhCCceEEEEEeCCCC------HHHHHHhhcCCCCCCCCcEEEEEeCCchhhhcc
Q 039455          117 VHKGINLIRWRLCRKRVLVVLDDVDQ------LEQLQALAGNHDWFGFGSRIIITTRDEHVLKGH  175 (216)
Q Consensus       117 ~~~~~~~l~~~l~~~~~llvlDd~~~------~~~~~~l~~~~~~~~~~~~il~tsr~~~~~~~~  175 (216)
                      .+.....+.+.+..++-+|++|+.-+      ...+..++..+.. ..+..+|++||+.+.+..+
T Consensus       149 Gq~QRvalArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~-~~g~tvi~vTHd~~~a~~~  212 (355)
T 1z47_A          149 GQQQRVALARALAPRPQVLLFDEPFAAIDTQIRRELRTFVRQVHD-EMGVTSVFVTHDQEEALEV  212 (355)
T ss_dssp             HHHHHHHHHHHHTTCCSEEEEESTTCCSSHHHHHHHHHHHHHHHH-HHTCEEEEECSCHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHH-hcCCEEEEECCCHHHHHHh
Confidence            34445578899999999999998732      1233333332210 1267899999998765544

>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A

Probab=98.57  E-value=3.2e-07  Score=70.90  Aligned_cols=63  Identities=19%  Similarity=0.093  Sum_probs=41.2

Q ss_pred             hhHHHHHHHhCCceEEEEEeCCCC------HHHHHHhhcCCCCCCCCcEEEEEeCCchhhhccCCcceEEe
Q 039455          119 KGINLIRWRLCRKRVLVVLDDVDQ------LEQLQALAGNHDWFGFGSRIIITTRDEHVLKGHGVTNIYKV  183 (216)
Q Consensus       119 ~~~~~l~~~l~~~~~llvlDd~~~------~~~~~~l~~~~~~~~~~~~il~tsr~~~~~~~~~~~~~~~l  183 (216)
                      ...-.+...+..++-+|++|+.-+      ...+..++..+.  ..+..||++||+.+....+.++..+.+
T Consensus       170 ~QRv~iAraL~~~p~lLlLDEPts~LD~~~~~~l~~~l~~l~--~~g~tviivtHd~~~~~~~~~d~v~~l  238 (267)
T 2zu0_C          170 KKRNDILQMAVLEPELCILDESDSGLDIDALKVVADGVNSLR--DGKRSFIIVTHYQRILDYIKPDYVHVL  238 (267)
T ss_dssp             HHHHHHHHHHHHCCSEEEEESTTTTCCHHHHHHHHHHHHTTC--CSSCEEEEECSSGGGGGTSCCSEEEEE
T ss_pred             HHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHH--hcCCEEEEEeeCHHHHHhhcCCEEEEE
Confidence            344467788888899999998732      244555555553  347889999999877655323444433

>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}

Probab=98.56  E-value=1.3e-07  Score=75.96  Aligned_cols=58  Identities=14%  Similarity=0.080  Sum_probs=37.1

Q ss_pred             hhhhHHHHHHHhCCceEEEEEeCCCC------HHHHHHhhcCCCCCCCCcEEEEEeCCchhhhcc
Q 039455          117 VHKGINLIRWRLCRKRVLVVLDDVDQ------LEQLQALAGNHDWFGFGSRIIITTRDEHVLKGH  175 (216)
Q Consensus       117 ~~~~~~~l~~~l~~~~~llvlDd~~~------~~~~~~l~~~~~~~~~~~~il~tsr~~~~~~~~  175 (216)
                      .+.....+.+.+..++-+|++|+.-+      ...+..++..+.. ..+..+|++||+.+.+..+
T Consensus       137 Gq~QRvalArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~-~~g~tvi~vTHd~~~a~~~  200 (362)
T 2it1_A          137 GQQQRVAIARALVKEPEVLLLDEPLSNLDALLRLEVRAELKRLQK-ELGITTVYVTHDQAEALAM  200 (362)
T ss_dssp             HHHHHHHHHHHHTTCCSEEEEESGGGGSCHHHHHHHHHHHHHHHH-HHTCEEEEEESCHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHHH-hCCCEEEEECCCHHHHHHh
Confidence            34445578899999999999997731      2333333333210 1267899999998765443

>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C

Probab=98.56  E-value=5e-08  Score=74.60  Aligned_cols=28  Identities=21%  Similarity=0.310  Sum_probs=24.3

Q ss_pred             CeeEEEEEecCCCcHHHHHHHHHHHhcC
Q 039455           48 DVRFIGICGMGGIGKTTLAKVLYNTLKD   75 (216)
Q Consensus        48 ~~~~i~I~G~~GiGKTtL~~~~~~~~~~   75 (216)
                      .+..++|.|++|+|||||++.+++.+..
T Consensus        25 ~Ge~~~liG~NGsGKSTLlk~l~Gl~~p   52 (249)
T 2qi9_C           25 AGEILHLVGPNGAGKSTLLARMAGMTSG   52 (249)
T ss_dssp             TTCEEEEECCTTSSHHHHHHHHTTSSCC
T ss_pred             CCCEEEEECCCCCcHHHHHHHHhCCCCC
Confidence            4579999999999999999999986543

>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}

Probab=98.55  E-value=6.7e-08  Score=74.66  Aligned_cols=27  Identities=33%  Similarity=0.518  Sum_probs=23.7

Q ss_pred             CeeEEEEEecCCCcHHHHHHHHHHHhc
Q 039455           48 DVRFIGICGMGGIGKTTLAKVLYNTLK   74 (216)
Q Consensus        48 ~~~~i~I~G~~GiGKTtL~~~~~~~~~   74 (216)
                      .+..++|.|++|+|||||++.+++.+.
T Consensus        36 ~Ge~~~liG~nGsGKSTLl~~l~Gl~~   62 (266)
T 4g1u_C           36 SGEMVAIIGPNGAGKSTLLRLLTGYLS   62 (266)
T ss_dssp             TTCEEEEECCTTSCHHHHHHHHTSSSC
T ss_pred             CCCEEEEECCCCCcHHHHHHHHhcCCC
Confidence            457999999999999999999998543

>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}

Probab=98.55  E-value=4.8e-07  Score=66.70  Aligned_cols=61  Identities=15%  Similarity=0.121  Sum_probs=40.9

Q ss_pred             cccccccchh----HHHHHHHHHhcCCCC--eeEEEEEecCCCcHHHHHHHHHHHhcCCCCceEeec
Q 039455           24 AVDGLVGIAS----RMEKMNGYLEAGLDD--VRFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLA   84 (216)
Q Consensus        24 ~~~~~vgR~~----~~~~l~~~l~~~~~~--~~~i~I~G~~GiGKTtL~~~~~~~~~~~~~~~~~~~   84 (216)
                      .-+.|++.+.    .++.+..++......  ...+.|+|++|+|||+|++.++.........+.|+.
T Consensus        23 ~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~GtGKT~la~~i~~~~~~~~~~~~~~~   89 (202)
T 2w58_A           23 SLSDVDLNDDGRIKAIRFAERFVAEYEPGKKMKGLYLHGSFGVGKTYLLAAIANELAKRNVSSLIVY   89 (202)
T ss_dssp             CTTSSCCSSHHHHHHHHHHHHHHHHCCSSCCCCEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEEE
T ss_pred             CHhhccCCChhHHHHHHHHHHHHHHhhhccCCCeEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEE
Confidence            3456776543    444556666543221  278999999999999999999998765544455543

>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A

Probab=98.55  E-value=1.4e-07  Score=76.18  Aligned_cols=58  Identities=16%  Similarity=0.081  Sum_probs=36.7

Q ss_pred             hhhhHHHHHHHhCCceEEEEEeCCCCH------HHHHHhhcCCCCCCCCcEEEEEeCCchhhhcc
Q 039455          117 VHKGINLIRWRLCRKRVLVVLDDVDQL------EQLQALAGNHDWFGFGSRIIITTRDEHVLKGH  175 (216)
Q Consensus       117 ~~~~~~~l~~~l~~~~~llvlDd~~~~------~~~~~l~~~~~~~~~~~~il~tsr~~~~~~~~  175 (216)
                      .+.....+.+.+..++-+|++|+.-+.      ..+..++..+.. ..+..+|++||+.+.+..+
T Consensus       137 GqrQRVaiArAL~~~P~lLLLDEPts~LD~~~~~~l~~~l~~l~~-~~g~tii~vTHd~~ea~~~  200 (381)
T 3rlf_A          137 GQRQRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHK-RLGRTMIYVTHDQVEAMTL  200 (381)
T ss_dssp             HHHHHHHHHHHHHHCCSEEEEESTTTTSCHHHHHHHHHHHHHHHH-HHCCEEEEECSCHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCCEEEEECCCcCCCHHHHHHHHHHHHHHHH-hCCCEEEEEECCHHHHHHh
Confidence            344455688888889999999987321      233333322210 1367899999998765544

>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*

Probab=98.54  E-value=1.5e-07  Score=72.10  Aligned_cols=63  Identities=19%  Similarity=0.134  Sum_probs=40.2

Q ss_pred             hhHHHHHHHhCCceEEEEEeCCC------CHHHHHHhhcCCCCCCCCcEEEEEeCCchhhhccCCcceEEe
Q 039455          119 KGINLIRWRLCRKRVLVVLDDVD------QLEQLQALAGNHDWFGFGSRIIITTRDEHVLKGHGVTNIYKV  183 (216)
Q Consensus       119 ~~~~~l~~~l~~~~~llvlDd~~------~~~~~~~l~~~~~~~~~~~~il~tsr~~~~~~~~~~~~~~~l  183 (216)
                      ...-.+...+..++-+|++|+.-      ....+..++..+.  ..+..||++||+.+.+..+.++..+.+
T Consensus       149 kQrv~iAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~--~~g~tvi~vtHd~~~~~~~~~d~v~~l  217 (250)
T 2d2e_A          149 KKRNEILQLLVLEPTYAVLDETDSGLDIDALKVVARGVNAMR--GPNFGALVITHYQRILNYIQPDKVHVM  217 (250)
T ss_dssp             HHHHHHHHHHHHCCSEEEEECGGGTTCHHHHHHHHHHHHHHC--STTCEEEEECSSSGGGGTSCCSEEEEE
T ss_pred             HHHHHHHHHHHcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHH--hcCCEEEEEecCHHHHHHhcCCEEEEE
Confidence            33445777888889999999773      2234444444443  246789999999877665423444433

>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*

Probab=98.54  E-value=1.5e-07  Score=70.22  Aligned_cols=44  Identities=20%  Similarity=0.176  Sum_probs=31.5

Q ss_pred             HHHHHhcCCCCeeEEEEEecCCCcHHHHHHHHHHHhcCCCCceEeec
Q 039455           38 MNGYLEAGLDDVRFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLA   84 (216)
Q Consensus        38 l~~~l~~~~~~~~~i~I~G~~GiGKTtL~~~~~~~~~~~~~~~~~~~   84 (216)
                      |...+..+-..+.+++|.|++|+|||||+..++.  . ....+.|++
T Consensus         9 LD~~l~Ggi~~G~~~~i~G~~GsGKTtl~~~l~~--~-~~~~v~~i~   52 (220)
T 2cvh_A            9 LDSLLGGGFAPGVLTQVYGPYASGKTTLALQTGL--L-SGKKVAYVD   52 (220)
T ss_dssp             HHHHTTSSBCTTSEEEEECSTTSSHHHHHHHHHH--H-HCSEEEEEE
T ss_pred             HHHhhcCCCcCCEEEEEECCCCCCHHHHHHHHHH--H-cCCcEEEEE
Confidence            4444443434568999999999999999999998  2 234566664

>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*

Probab=98.52  E-value=6.1e-07  Score=67.30  Aligned_cols=37  Identities=27%  Similarity=0.409  Sum_probs=28.0

Q ss_pred             HHHHHhcCCCCeeEEEEEecCCCcHHHHHHHHHHHhc
Q 039455           38 MNGYLEAGLDDVRFIGICGMGGIGKTTLAKVLYNTLK   74 (216)
Q Consensus        38 l~~~l~~~~~~~~~i~I~G~~GiGKTtL~~~~~~~~~   74 (216)
                      |...+..+-..+.+++|.|++|+|||||++.++....
T Consensus        14 LD~~l~ggi~~G~~~~l~G~nGsGKSTll~~l~g~~~   50 (231)
T 4a74_A           14 LDKLLGGGIETQAITEVFGEFGSGKTQLAHTLAVMVQ   50 (231)
T ss_dssp             HHHHTTSSEESSEEEEEEESTTSSHHHHHHHHHHHTT
T ss_pred             HHhHhcCCCCCCcEEEEECCCCCCHHHHHHHHHHHHh
Confidence            3334433334568999999999999999999998543

>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}

Probab=98.52  E-value=2.2e-07  Score=74.46  Aligned_cols=58  Identities=12%  Similarity=0.133  Sum_probs=37.8

Q ss_pred             chhhhHHHHHHHhCCceEEEEEeCCCCH------HHHHH-hhcCCCCCCCCcEEEEEeCCchhhhcc
Q 039455          116 DVHKGINLIRWRLCRKRVLVVLDDVDQL------EQLQA-LAGNHDWFGFGSRIIITTRDEHVLKGH  175 (216)
Q Consensus       116 ~~~~~~~~l~~~l~~~~~llvlDd~~~~------~~~~~-l~~~~~~~~~~~~il~tsr~~~~~~~~  175 (216)
                      ..+.....+.+.+..++-+|++|+.-+-      ..+.. +.....  ..+..+|++||+.+.+..+
T Consensus       141 GGq~QRValArAL~~~P~lLLLDEPts~LD~~~r~~l~~~l~~~~~--~~g~tvi~vTHd~~ea~~~  205 (359)
T 3fvq_A          141 GGQQQRAALARALAPDPELILLDEPFSALDEQLRRQIREDMIAALR--ANGKSAVFVSHDREEALQY  205 (359)
T ss_dssp             HHHHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHH--HTTCEEEEECCCHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHH--hCCCEEEEEeCCHHHHHHH
Confidence            3445566789999999999999987321      22322 222111  2468899999998765544

>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12

Probab=98.52  E-value=8e-08  Score=73.10  Aligned_cols=57  Identities=16%  Similarity=0.006  Sum_probs=36.4

Q ss_pred             hhhHHHHHHHhCCceEEEEEeCCCC------HHHHHHhhcCCCCCCCCcEEEEEeCCchhhhcc
Q 039455          118 HKGINLIRWRLCRKRVLVVLDDVDQ------LEQLQALAGNHDWFGFGSRIIITTRDEHVLKGH  175 (216)
Q Consensus       118 ~~~~~~l~~~l~~~~~llvlDd~~~------~~~~~~l~~~~~~~~~~~~il~tsr~~~~~~~~  175 (216)
                      +...-.+...+..++-++++|+.-+      ...+..++..+.. ..+..||++||+.+.+..+
T Consensus       131 qkqRv~lAral~~~p~lllLDEPts~LD~~~~~~~~~~l~~l~~-~~g~tvi~vtHd~~~~~~~  193 (240)
T 2onk_A          131 ERQRVALARALVIQPRLLLLDEPLSAVDLKTKGVLMEELRFVQR-EFDVPILHVTHDLIEAAML  193 (240)
T ss_dssp             HHHHHHHHHHHTTCCSSBEEESTTSSCCHHHHHHHHHHHHHHHH-HHTCCEEEEESCHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHH-hcCCEEEEEeCCHHHHHHh
Confidence            3445568889999999999998732      1333333333210 1257799999998765443

>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*

Probab=98.51  E-value=2.7e-07  Score=71.47  Aligned_cols=63  Identities=16%  Similarity=0.162  Sum_probs=41.2

Q ss_pred             hhhHHHHHHHhCCceEEEEEeCCCC------HHHHHHhhcCCCCCCCCcEEEEEeCCchhhhccCCcceEEe
Q 039455          118 HKGINLIRWRLCRKRVLVVLDDVDQ------LEQLQALAGNHDWFGFGSRIIITTRDEHVLKGHGVTNIYKV  183 (216)
Q Consensus       118 ~~~~~~l~~~l~~~~~llvlDd~~~------~~~~~~l~~~~~~~~~~~~il~tsr~~~~~~~~~~~~~~~l  183 (216)
                      +...-.+.+.+..++-+|++|+.-+      ...+..++..+.. ..+..||++||+.+.+..  ++..+.+
T Consensus       161 q~QRv~lAraL~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~~-~~g~tviivtHd~~~~~~--~d~v~~l  229 (271)
T 2ixe_A          161 QRQAVALARALIRKPRLLILDNATSALDAGNQLRVQRLLYESPE-WASRTVLLITQQLSLAER--AHHILFL  229 (271)
T ss_dssp             HHHHHHHHHHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHHCTT-TTTSEEEEECSCHHHHTT--CSEEEEE
T ss_pred             HHHHHHHHHHHhcCCCEEEEECCccCCCHHHHHHHHHHHHHHHh-hcCCEEEEEeCCHHHHHh--CCEEEEE
Confidence            3445568889999999999998732      2334444443321 236789999999877653  4555444

>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*

Probab=98.51  E-value=8.5e-07  Score=78.22  Aligned_cols=48  Identities=21%  Similarity=0.248  Sum_probs=37.6

Q ss_pred             cccccchhHHHHHHHHHhcC-------CCCeeEEEEEecCCCcHHHHHHHHHHHh
Q 039455           26 DGLVGIASRMEKMNGYLEAG-------LDDVRFIGICGMGGIGKTTLAKVLYNTL   73 (216)
Q Consensus        26 ~~~vgR~~~~~~l~~~l~~~-------~~~~~~i~I~G~~GiGKTtL~~~~~~~~   73 (216)
                      ..++|.+..++.+...+...       ......+.++||+|+|||++|+.++...
T Consensus       458 ~~v~g~~~~~~~l~~~i~~~~~g~~~~~~p~~~~ll~G~~GtGKT~la~~la~~l  512 (758)
T 1r6b_X          458 MLVFGQDKAIEALTEAIKMARAGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSKAL  512 (758)
T ss_dssp             TTSCSCHHHHHHHHHHHHHHHTTCSCTTSCSEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             hhccCHHHHHHHHHHHHHHHhcccCCCCCCceEEEEECCCCCcHHHHHHHHHHHh
Confidence            35789999998887765421       1123479999999999999999999877

>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}

Probab=98.50  E-value=1.3e-07  Score=76.04  Aligned_cols=58  Identities=10%  Similarity=0.054  Sum_probs=37.4

Q ss_pred             hhhhHHHHHHHhCCceEEEEEeCCCC------HHHHHHhhcCCCCCCCCcEEEEEeCCchhhhcc
Q 039455          117 VHKGINLIRWRLCRKRVLVVLDDVDQ------LEQLQALAGNHDWFGFGSRIIITTRDEHVLKGH  175 (216)
Q Consensus       117 ~~~~~~~l~~~l~~~~~llvlDd~~~------~~~~~~l~~~~~~~~~~~~il~tsr~~~~~~~~  175 (216)
                      .+...-.+.+.+..++-+|++|+.-+      ...+..++..+.. ..+..+|++||+.+.+..+
T Consensus       137 Gq~QRvalArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~-~~g~tvi~vTHd~~~~~~~  200 (359)
T 2yyz_A          137 GQQQRVALARALVKQPKVLLFDEPLSNLDANLRMIMRAEIKHLQQ-ELGITSVYVTHDQAEAMTM  200 (359)
T ss_dssp             HHHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHH-HHCCEEEEEESCHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHH-hcCCEEEEEcCCHHHHHHh
Confidence            44455578999999999999998732      1233333332210 1267899999998765543

>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12

Probab=98.49  E-value=1.8e-07  Score=74.88  Aligned_cols=58  Identities=10%  Similarity=0.016  Sum_probs=37.2

Q ss_pred             hhhhHHHHHHHhCCceEEEEEeCCCC------HHHHHHhhcCCCCCCCCcEEEEEeCCchhhhcc
Q 039455          117 VHKGINLIRWRLCRKRVLVVLDDVDQ------LEQLQALAGNHDWFGFGSRIIITTRDEHVLKGH  175 (216)
Q Consensus       117 ~~~~~~~l~~~l~~~~~llvlDd~~~------~~~~~~l~~~~~~~~~~~~il~tsr~~~~~~~~  175 (216)
                      .+...-.+.+.+..++-+|++|+.-+      ...+..++..+.. ..+..+|++||+.+.+..+
T Consensus       131 Gq~QRvalAraL~~~P~lLLLDEP~s~LD~~~~~~l~~~l~~l~~-~~g~tii~vTHd~~~~~~~  194 (348)
T 3d31_A          131 GEQQRVALARALVTNPKILLLDEPLSALDPRTQENAREMLSVLHK-KNKLTVLHITHDQTEARIM  194 (348)
T ss_dssp             HHHHHHHHHHHTTSCCSEEEEESSSTTSCHHHHHHHHHHHHHHHH-HTTCEEEEEESCHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHHH-hcCCEEEEEeCCHHHHHHh
Confidence            34445578899999999999998732      1333333332210 1367899999997665443

>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*

Probab=98.49  E-value=4e-07  Score=69.56  Aligned_cols=63  Identities=13%  Similarity=0.122  Sum_probs=41.3

Q ss_pred             hhhhHHHHHHHhCCceEEEEEeCCCC------HHHHHHhhcCCCCCCCCcEEEEEeCCchhhhccCCcceEEec
Q 039455          117 VHKGINLIRWRLCRKRVLVVLDDVDQ------LEQLQALAGNHDWFGFGSRIIITTRDEHVLKGHGVTNIYKVR  184 (216)
Q Consensus       117 ~~~~~~~l~~~l~~~~~llvlDd~~~------~~~~~~l~~~~~~~~~~~~il~tsr~~~~~~~~~~~~~~~l~  184 (216)
                      .+...-.+.+.+..++-++++|+.-+      ...+..++..+.   .+..||++||+......  ++..+.+.
T Consensus       149 Gq~qRv~iAraL~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~---~g~tviivtH~~~~~~~--~d~v~~l~  217 (247)
T 2ff7_A          149 GQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMRNMHKIC---KGRTVIIIAHRLSTVKN--ADRIIVME  217 (247)
T ss_dssp             HHHHHHHHHHHHTTCCSEEEECCCCSCCCHHHHHHHHHHHHHHH---TTSEEEEECSSGGGGTT--SSEEEEEE
T ss_pred             HHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHc---CCCEEEEEeCCHHHHHh--CCEEEEEE
Confidence            34445568888999999999998732      233444443332   36789999999877643  55555543

>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12

Probab=98.48  E-value=5.5e-07  Score=68.59  Aligned_cols=61  Identities=13%  Similarity=0.178  Sum_probs=39.9

Q ss_pred             hhhHHHHHHHhCCceEEEEEeCCC------CHHHHHHhhcCCCCCCCCcEEEEEeCCchhhhccCCcceEEe
Q 039455          118 HKGINLIRWRLCRKRVLVVLDDVD------QLEQLQALAGNHDWFGFGSRIIITTRDEHVLKGHGVTNIYKV  183 (216)
Q Consensus       118 ~~~~~~l~~~l~~~~~llvlDd~~------~~~~~~~l~~~~~~~~~~~~il~tsr~~~~~~~~~~~~~~~l  183 (216)
                      +...-.+.+.+..++-++++|+.-      ....+..++..+.   .+..+|++||+.+....  ++..+.+
T Consensus       144 q~qrv~lAral~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~---~~~tvi~vtH~~~~~~~--~d~v~~l  210 (243)
T 1mv5_A          144 QRQRLAIARAFLRNPKILMLDEATASLDSESESMVQKALDSLM---KGRTTLVIAHRLSTIVD--ADKIYFI  210 (243)
T ss_dssp             HHHHHHHHHHHHHCCSEEEEECCSCSSCSSSCCHHHHHHHHHH---TTSEEEEECCSHHHHHH--CSEEEEE
T ss_pred             HHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHhc---CCCEEEEEeCChHHHHh--CCEEEEE
Confidence            344556788888889999999762      3344444443332   26789999999876643  4555544

>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20

Probab=98.47  E-value=1.3e-06  Score=70.65  Aligned_cols=49  Identities=20%  Similarity=0.143  Sum_probs=37.4

Q ss_pred             cccccchhHHHHHHHHHh----------------------------cCCCCeeEEEEEecCCCcHHHHHHHHHHHhc
Q 039455           26 DGLVGIASRMEKMNGYLE----------------------------AGLDDVRFIGICGMGGIGKTTLAKVLYNTLK   74 (216)
Q Consensus        26 ~~~vgR~~~~~~l~~~l~----------------------------~~~~~~~~i~I~G~~GiGKTtL~~~~~~~~~   74 (216)
                      ..++|.+...+.|...+.                            ........+.++||+|+|||++|+.++..+.
T Consensus        21 ~~viGq~~ak~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~p~~~~~~~~~~~~~ill~Gp~GtGKT~la~~la~~l~   97 (376)
T 1um8_A           21 NYVIGQEQAKKVFSVAVYNHYKRLSFKEKLKKQDNQDSNVELEHLEEVELSKSNILLIGPTGSGKTLMAQTLAKHLD   97 (376)
T ss_dssp             TTCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHCSHHHHHHHHHHHHTTCCCCCEEEECCTTSSHHHHHHHHHHHTT
T ss_pred             hHccCcHHHHHHHHHHHHHHHHHHHhhhhhhhccccccccccccccccccCCCCEEEECCCCCCHHHHHHHHHHHhC
Confidence            357899888888876652                            0112346799999999999999999998773

>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*

Probab=98.46  E-value=3.5e-07  Score=80.45  Aligned_cols=167  Identities=14%  Similarity=0.135  Sum_probs=83.3

Q ss_pred             ccccccchhHHHHHHHHHhcC-----------CCCeeEEEEEecCCCcHHHHHHHHHHHhcCCCCceEeecccccccccc
Q 039455           25 VDGLVGIASRMEKMNGYLEAG-----------LDDVRFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLANVREVSVTR   93 (216)
Q Consensus        25 ~~~~vgR~~~~~~l~~~l~~~-----------~~~~~~i~I~G~~GiGKTtL~~~~~~~~~~~~~~~~~~~~~~~~~~~~   93 (216)
                      .....|-++..+.|...+...           ....+.++++||+|+|||.+|+.+++.....|  . .+. .       
T Consensus       476 w~diggl~~~k~~l~e~v~~p~~~p~~f~~~g~~~~~gvLl~GPPGtGKT~lAkaiA~e~~~~f--~-~v~-~-------  544 (806)
T 3cf2_A          476 WEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQANF--I-SIK-G-------  544 (806)
T ss_dssp             STTCCSCHHHHHHHTTTTTTTTTCSGGGSSSCCCCCSCCEEESSTTSSHHHHHHHHHHTTTCEE--E-ECC-H-------
T ss_pred             HHHhCCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCceEEEecCCCCCchHHHHHHHHHhCCce--E-Eec-c-------
Confidence            445677888888887754321           12345789999999999999999998764321  1 111 0       


Q ss_pred             CchHHHHHHHHHHHhhccccccchhhhHHHHHHHhCCceEEEEEeCCCCHH----------------HHHHhhcCCCCC-
Q 039455           94 GLVPLQEQLLSEVLMERNLIIWDVHKGINLIRWRLCRKRVLVVLDDVDQLE----------------QLQALAGNHDWF-  156 (216)
Q Consensus        94 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~llvlDd~~~~~----------------~~~~l~~~~~~~-  156 (216)
                            ..++.    ..  -..+.......+..+-...+++|+||+++++-                .+..++..+.-. 
T Consensus       545 ------~~l~s----~~--vGese~~vr~lF~~Ar~~~P~IifiDEiDsl~~~R~~~~~~~~~~~~rv~~~lL~~mdg~~  612 (806)
T 3cf2_A          545 ------PELLT----MW--FGESEANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMS  612 (806)
T ss_dssp             ------HHHHT----TT--CSSCHHHHHHHHHHHHTTCSEEEECSCGGGCC--------------CHHHHHHHHHHHSSC
T ss_pred             ------chhhc----cc--cchHHHHHHHHHHHHHHcCCceeechhhhHHhhccCCCCCCCchHHHHHHHHHHHHHhCCC
Confidence                  11111    11  11111223333444445679999999986430                123333222111 


Q ss_pred             -CCCcEEEEEeCCchhhhc--c---CCcceEEecCCChHHHHHHHhhhhcCCC-CCchhHhhhcc
Q 039455          157 -GFGSRIIITTRDEHVLKG--H---GVTNIYKVRGLDYVEALQLFHLKVSKGK-QPTDDRVELSK  214 (216)
Q Consensus       157 -~~~~~il~tsr~~~~~~~--~---~~~~~~~l~~l~~~~~~~ll~~~~~~~~-~~~~~~~~l~~  214 (216)
                       ..+..+|.||..+..+..  +   ..+..+.++..+.++..++|+.+..... ..+-++..|++
T Consensus       613 ~~~~V~vi~aTN~p~~lD~AllRpgRfd~~i~v~lPd~~~R~~il~~~l~~~~~~~~~dl~~la~  677 (806)
T 3cf2_A          613 TKKNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSRVAILKANLRKSPVAKDVDLEFLAK  677 (806)
T ss_dssp             SSSSEEEECC-CCSSSSCHHHHSTTTSCCEEEC-----CHHHHTTTTTSSCC--CCC--------
T ss_pred             CCCCEEEEEeCCCchhCCHhHcCCCcceEEEEECCcCHHHHHHHHHHHhcCCCCCCCCCHHHHHH
Confidence             123344445554433221  1   3467889988888888899887764433 23334555554

>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*

Probab=98.45  E-value=7.2e-07  Score=71.66  Aligned_cols=111  Identities=14%  Similarity=0.116  Sum_probs=65.1

Q ss_pred             eeEEEEEecCCCcHHHHHHHHHHHhcCCCCc-eEeeccccccccccCchHHHHHHHHHHHhhccccccchhhhHHHHHHH
Q 039455           49 VRFIGICGMGGIGKTTLAKVLYNTLKDQFEA-SSFLANVREVSVTRGLVPLQEQLLSEVLMERNLIIWDVHKGINLIRWR  127 (216)
Q Consensus        49 ~~~i~I~G~~GiGKTtL~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~  127 (216)
                      +..++|+||+|+|||||++.+++.+...... +..+.+.......... .        ...... ...........+...
T Consensus       123 ~g~i~I~GptGSGKTTlL~~l~g~~~~~~~~~i~t~ed~~e~~~~~~~-~--------~v~q~~-~~~~~~~~~~~La~a  192 (356)
T 3jvv_A          123 RGLVLVTGPTGSGKSTTLAAMLDYLNNTKYHHILTIEDPIEFVHESKK-C--------LVNQRE-VHRDTLGFSEALRSA  192 (356)
T ss_dssp             SEEEEEECSTTSCHHHHHHHHHHHHHHHCCCEEEEEESSCCSCCCCSS-S--------EEEEEE-BTTTBSCHHHHHHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHHhcccCCCCcEEEEccCcHHhhhhccc-c--------ceeeee-eccccCCHHHHHHHH
Confidence            3699999999999999999999876543222 2222111100000000 0        000000 001112344578889


Q ss_pred             hCCceEEEEEeCCCCHHHHHHhhcCCCCCCCCcEEEEEeCCchhh
Q 039455          128 LCRKRVLVVLDDVDQLEQLQALAGNHDWFGFGSRIIITTRDEHVL  172 (216)
Q Consensus       128 l~~~~~llvlDd~~~~~~~~~l~~~~~~~~~~~~il~tsr~~~~~  172 (216)
                      +..+|-+|++|++...+.+..+....   ..|..+++|+|..+..
T Consensus       193 L~~~PdvillDEp~d~e~~~~~~~~~---~~G~~vl~t~H~~~~~  234 (356)
T 3jvv_A          193 LREDPDIILVGEMRDLETIRLALTAA---ETGHLVFGTLHTTSAA  234 (356)
T ss_dssp             TTSCCSEEEESCCCSHHHHHHHHHHH---HTTCEEEEEESCSSHH
T ss_pred             hhhCcCEEecCCCCCHHHHHHHHHHH---hcCCEEEEEEccChHH
Confidence            99999999999998766555444322   2467799999987543

>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*

Probab=98.45  E-value=1.7e-07  Score=75.14  Aligned_cols=58  Identities=14%  Similarity=0.182  Sum_probs=37.9

Q ss_pred             hhhhHHHHHHHhCCceEEEEEeCCC------CHHHHHHhhcCCCCCCCCcEEEEEeCCchhhhcc
Q 039455          117 VHKGINLIRWRLCRKRVLVVLDDVD------QLEQLQALAGNHDWFGFGSRIIITTRDEHVLKGH  175 (216)
Q Consensus       117 ~~~~~~~l~~~l~~~~~llvlDd~~------~~~~~~~l~~~~~~~~~~~~il~tsr~~~~~~~~  175 (216)
                      .+...-.+.+.+..++-+|++|+.-      ....+..++..+.. ..+..+|++||+.+.+..+
T Consensus       144 Gq~QRvalAraL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~-~~g~tvi~vTHd~~~~~~~  207 (353)
T 1oxx_K          144 AQQQRVALARALVKDPSLLLLDEPFSNLDARMRDSARALVKEVQS-RLGVTLLVVSHDPADIFAI  207 (353)
T ss_dssp             HHHHHHHHHHHHTTCCSEEEEESTTTTSCGGGHHHHHHHHHHHHH-HHCCEEEEEESCHHHHHHH
T ss_pred             HHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHHH-hcCCEEEEEeCCHHHHHHh
Confidence            3445557899999999999999763      22344444333210 1267899999998765543

>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*

Probab=98.45  E-value=1.3e-07  Score=76.28  Aligned_cols=60  Identities=8%  Similarity=-0.021  Sum_probs=38.5

Q ss_pred             cchhhhHHHHHHHhCCceEEEEEeCCCC------HHHHHHhhcCCCCCCCCcEEEEEeCCchhhhcc
Q 039455          115 WDVHKGINLIRWRLCRKRVLVVLDDVDQ------LEQLQALAGNHDWFGFGSRIIITTRDEHVLKGH  175 (216)
Q Consensus       115 ~~~~~~~~~l~~~l~~~~~llvlDd~~~------~~~~~~l~~~~~~~~~~~~il~tsr~~~~~~~~  175 (216)
                      +..+...-.+.+.+..++-+|++|+.-+      ...+..++..+.. ..+..+|++||+.+.+..+
T Consensus       143 SGGq~QRvalArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~-~~g~tvi~vTHd~~~a~~~  208 (372)
T 1v43_A          143 SGGQRQRVAVARAIVVEPDVLLMDEPLSNLDAKLRVAMRAEIKKLQQ-KLKVTTIYVTHDQVEAMTM  208 (372)
T ss_dssp             CSSCHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHH-HHTCEEEEEESCHHHHHHH
T ss_pred             CHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHH-hCCCEEEEEeCCHHHHHHh
Confidence            3344556678999999999999998732      1233333332210 1267899999998765443

>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A

Probab=98.44  E-value=3e-07  Score=74.26  Aligned_cols=58  Identities=14%  Similarity=0.099  Sum_probs=36.7

Q ss_pred             hhhhHHHHHHHhCCceEEEEEeCCCC------HHHHHHhhcCCCCCCCCcEEEEEeCCchhhhcc
Q 039455          117 VHKGINLIRWRLCRKRVLVVLDDVDQ------LEQLQALAGNHDWFGFGSRIIITTRDEHVLKGH  175 (216)
Q Consensus       117 ~~~~~~~l~~~l~~~~~llvlDd~~~------~~~~~~l~~~~~~~~~~~~il~tsr~~~~~~~~  175 (216)
                      .+...-.+.+.+..++-+|++|+.-+      ...+..++..+.. ..+..+|++||+.+.+..+
T Consensus       143 Gq~QRvalArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~-~~g~tvi~vTHd~~~a~~~  206 (372)
T 1g29_1          143 GQRQRVALGRAIVRKPQVFLMDEPLSNLDAKLRVRMRAELKKLQR-QLGVTTIYVTHDQVEAMTM  206 (372)
T ss_dssp             HHHHHHHHHHHHHTCCSEEEEECTTTTSCHHHHHHHHHHHHHHHH-HHTCEEEEEESCHHHHHHH
T ss_pred             HHHHHHHHHHHHhcCCCEEEECCCCccCCHHHHHHHHHHHHHHHH-hcCCEEEEECCCHHHHHHh
Confidence            34445568888889999999998732      1233333332210 1267899999998765543

>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*

Probab=98.44  E-value=6.9e-07  Score=74.25  Aligned_cols=52  Identities=29%  Similarity=0.320  Sum_probs=40.5

Q ss_pred             ccccccchhHHHHHHHHHh---cCCCCeeEEEEEecCCCcHHHHHHHHHHHhcCC
Q 039455           25 VDGLVGIASRMEKMNGYLE---AGLDDVRFIGICGMGGIGKTTLAKVLYNTLKDQ   76 (216)
Q Consensus        25 ~~~~vgR~~~~~~l~~~l~---~~~~~~~~i~I~G~~GiGKTtL~~~~~~~~~~~   76 (216)
                      ...++|.+..++.+..++.   .+......+.++||+|+|||+||+.++..+...
T Consensus        36 ~~~iiG~~~~~~~l~~~~~~~~~~~~~~~~iLl~GppGtGKT~la~ala~~l~~~   90 (456)
T 2c9o_A           36 ASGLVGQENAREACGVIVELIKSKKMAGRAVLLAGPPGTGKTALALAIAQELGSK   90 (456)
T ss_dssp             ETTEESCHHHHHHHHHHHHHHHTTCCTTCEEEEECCTTSSHHHHHHHHHHHHCTT
T ss_pred             hhhccCHHHHHHHHHHHHHHHHhCCCCCCeEEEECCCcCCHHHHHHHHHHHhCCC
Confidence            4789999999887665543   332334679999999999999999999987543

>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11

Probab=98.43  E-value=6.1e-07  Score=65.06  Aligned_cols=24  Identities=46%  Similarity=0.530  Sum_probs=21.6

Q ss_pred             EEEEEecCCCcHHHHHHHHHHHhc
Q 039455           51 FIGICGMGGIGKTTLAKVLYNTLK   74 (216)
Q Consensus        51 ~i~I~G~~GiGKTtL~~~~~~~~~   74 (216)
                      .++|+|++|+|||||++.+++.+.
T Consensus         2 ~i~l~G~nGsGKTTLl~~l~g~l~   25 (178)
T 1ye8_A            2 KIIITGEPGVGKTTLVKKIVERLG   25 (178)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHHG
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhC
Confidence            578999999999999999998764

>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}

Probab=98.43  E-value=3e-07  Score=69.07  Aligned_cols=38  Identities=18%  Similarity=0.230  Sum_probs=28.7

Q ss_pred             CCeeEEEEEecCCCcHHHHHHHHHHHhcCCCCceEeec
Q 039455           47 DDVRFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLA   84 (216)
Q Consensus        47 ~~~~~i~I~G~~GiGKTtL~~~~~~~~~~~~~~~~~~~   84 (216)
                      ..+..++|.|++|+|||||++.++......-..+.|+.
T Consensus        21 ~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~v~~~~   58 (235)
T 2w0m_A           21 PQGFFIALTGEPGTGKTIFSLHFIAKGLRDGDPCIYVT   58 (235)
T ss_dssp             ETTCEEEEECSTTSSHHHHHHHHHHHHHHHTCCEEEEE
T ss_pred             cCCCEEEEEcCCCCCHHHHHHHHHHHHHHCCCeEEEEE
Confidence            34579999999999999999999976543333455553

>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}

Probab=98.41  E-value=1.1e-06  Score=73.52  Aligned_cols=46  Identities=20%  Similarity=0.161  Sum_probs=39.1

Q ss_pred             ccccccchhHHHHHHHHHhcCCCCeeEEEEEecCCCcHHHHHHHHHHHhc
Q 039455           25 VDGLVGIASRMEKMNGYLEAGLDDVRFIGICGMGGIGKTTLAKVLYNTLK   74 (216)
Q Consensus        25 ~~~~vgR~~~~~~l~~~l~~~~~~~~~i~I~G~~GiGKTtL~~~~~~~~~   74 (216)
                      .+.++|+++.++.+...+..+    ..+.|+||+|+|||+||+.++....
T Consensus        21 ~~~ivGq~~~i~~l~~al~~~----~~VLL~GpPGtGKT~LAraLa~~l~   66 (500)
T 3nbx_X           21 EKGLYERSHAIRLCLLAALSG----ESVFLLGPPGIAKSLIARRLKFAFQ   66 (500)
T ss_dssp             HTTCSSCHHHHHHHHHHHHHT----CEEEEECCSSSSHHHHHHHGGGGBS
T ss_pred             HhhhHHHHHHHHHHHHHHhcC----CeeEeecCchHHHHHHHHHHHHHHh
Confidence            355899999999888877654    5899999999999999999998764

>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}

Probab=98.41  E-value=8.2e-07  Score=68.32  Aligned_cols=61  Identities=13%  Similarity=0.137  Sum_probs=39.3

Q ss_pred             hhhHHHHHHHhCCceEEEEEeCCCC------HHHHHHhhcCCCCCCCCcEEEEEeCCchhhhccCCcceEEe
Q 039455          118 HKGINLIRWRLCRKRVLVVLDDVDQ------LEQLQALAGNHDWFGFGSRIIITTRDEHVLKGHGVTNIYKV  183 (216)
Q Consensus       118 ~~~~~~l~~~l~~~~~llvlDd~~~------~~~~~~l~~~~~~~~~~~~il~tsr~~~~~~~~~~~~~~~l  183 (216)
                      +...-.+.+.+..++-++++|+.-+      ...+..++..+.   .+..+|++||+......  ++..+.+
T Consensus       160 qkqRv~lAraL~~~p~lllLDEPts~LD~~~~~~i~~~l~~l~---~~~tviivtH~~~~~~~--~d~i~~l  226 (260)
T 2ghi_A          160 ERQRIAIARCLLKDPKIVIFDEATSSLDSKTEYLFQKAVEDLR---KNRTLIIIAHRLSTISS--AESIILL  226 (260)
T ss_dssp             HHHHHHHHHHHHHCCSEEEEECCCCTTCHHHHHHHHHHHHHHT---TTSEEEEECSSGGGSTT--CSEEEEE
T ss_pred             HHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHhc---CCCEEEEEcCCHHHHHh--CCEEEEE
Confidence            3444567788888889999998732      233444443332   25789999999876643  4555444

>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20

Probab=98.40  E-value=2e-06  Score=76.84  Aligned_cols=49  Identities=29%  Similarity=0.331  Sum_probs=38.3

Q ss_pred             ccccchhHHHHHHHHHhcC-------CCCeeEEEEEecCCCcHHHHHHHHHHHhcC
Q 039455           27 GLVGIASRMEKMNGYLEAG-------LDDVRFIGICGMGGIGKTTLAKVLYNTLKD   75 (216)
Q Consensus        27 ~~vgR~~~~~~l~~~l~~~-------~~~~~~i~I~G~~GiGKTtL~~~~~~~~~~   75 (216)
                      .++|.+..++.+...+...       ......+.|+||+|+|||++|+.++.....
T Consensus       559 ~viG~~~a~~~l~~~i~~~~~g~~~~~~p~~~vLl~Gp~GtGKT~lA~~la~~~~~  614 (854)
T 1qvr_A          559 RVVGQDEAIRAVADAIRRARAGLKDPNRPIGSFLFLGPTGVGKTELAKTLAATLFD  614 (854)
T ss_dssp             HSCSCHHHHHHHHHHHHHHGGGCSCSSSCSEEEEEBSCSSSSHHHHHHHHHHHHHS
T ss_pred             ccCCcHHHHHHHHHHHHHHhcccCCCCCCceEEEEECCCCCCHHHHHHHHHHHhcC
Confidence            4799999999887766521       111258999999999999999999987643

>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}

Probab=98.40  E-value=2.1e-07  Score=72.30  Aligned_cols=27  Identities=30%  Similarity=0.294  Sum_probs=23.7

Q ss_pred             CeeEEEEEecCCCcHHHHHHHHHHHhc
Q 039455           48 DVRFIGICGMGGIGKTTLAKVLYNTLK   74 (216)
Q Consensus        48 ~~~~i~I~G~~GiGKTtL~~~~~~~~~   74 (216)
                      .+.+++|.|++|+|||||++.+++.+.
T Consensus        46 ~Ge~~~liG~NGsGKSTLlk~l~Gl~~   72 (279)
T 2ihy_A           46 KGDKWILYGLNGAGKTTLLNILNAYEP   72 (279)
T ss_dssp             TTCEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred             CCCEEEEECCCCCcHHHHHHHHhCCCC
Confidence            457999999999999999999998543

>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}

Probab=98.39  E-value=2.2e-07  Score=79.58  Aligned_cols=63  Identities=10%  Similarity=-0.027  Sum_probs=41.1

Q ss_pred             hhhHHHHHHHhCCceEEEEEeCCCC------HHHHHHhhcCCCCCCCCcEEEEEeCCchhhhccCCcceEEe
Q 039455          118 HKGINLIRWRLCRKRVLVVLDDVDQ------LEQLQALAGNHDWFGFGSRIIITTRDEHVLKGHGVTNIYKV  183 (216)
Q Consensus       118 ~~~~~~l~~~l~~~~~llvlDd~~~------~~~~~~l~~~~~~~~~~~~il~tsr~~~~~~~~~~~~~~~l  183 (216)
                      +...-.+...+..++-+++||+.-+      ...+..++..+.  ..+..||++||+.+.+..+ ++..+.+
T Consensus       226 e~Qrv~iAraL~~~p~llllDEPts~LD~~~~~~l~~~l~~l~--~~g~tvi~vtHdl~~~~~~-~drv~vl  294 (608)
T 3j16_B          226 ELQRFAIGMSCVQEADVYMFDEPSSYLDVKQRLNAAQIIRSLL--APTKYVICVEHDLSVLDYL-SDFVCII  294 (608)
T ss_dssp             HHHHHHHHHHHHSCCSEEEEECTTTTCCHHHHHHHHHHHHGGG--TTTCEEEEECSCHHHHHHH-CSEEEEE
T ss_pred             HHHHHHHHHHHHhCCCEEEEECcccCCCHHHHHHHHHHHHHHH--hCCCEEEEEeCCHHHHHHh-CCEEEEE
Confidence            3444567888888999999998742      233444554443  3467899999998776655 3343333

>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}

Probab=98.38  E-value=8.2e-07  Score=72.08  Aligned_cols=64  Identities=11%  Similarity=0.131  Sum_probs=40.7

Q ss_pred             cchhhhHHHHHHHhCCceEEEEEeCC----C--CHHHHHHhhcCCCCCCCCcEEEEEeCCchhhhccCCcceEEe
Q 039455          115 WDVHKGINLIRWRLCRKRVLVVLDDV----D--QLEQLQALAGNHDWFGFGSRIIITTRDEHVLKGHGVTNIYKV  183 (216)
Q Consensus       115 ~~~~~~~~~l~~~l~~~~~llvlDd~----~--~~~~~~~l~~~~~~~~~~~~il~tsr~~~~~~~~~~~~~~~l  183 (216)
                      +..+...-.+.+.+..++-+|++|+.    |  ....+..++..+   ..+..+|++||+.+....  ++..+-+
T Consensus       157 SGGqrQRvalARAL~~~P~lLLLDEPts~LD~~~~~~l~~~l~~~---~~~~tvi~vtHd~e~~~~--aDri~vl  226 (390)
T 3gd7_A          157 SHGHKQLMCLARSVLSKAKILLLDEPSAHLDPVTYQIIRRTLKQA---FADCTVILCEARIEAMLE--CDQFLVI  226 (390)
T ss_dssp             CHHHHHHHHHHHHHHTTCCEEEEESHHHHSCHHHHHHHHHHHHTT---TTTSCEEEECSSSGGGTT--CSEEEEE
T ss_pred             CHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHH---hCCCEEEEEEcCHHHHHh--CCEEEEE
Confidence            33444555788888899999999966    2  223444444433   246789999998765543  4444433

>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}

Probab=98.38  E-value=3.7e-07  Score=77.29  Aligned_cols=55  Identities=15%  Similarity=0.069  Sum_probs=38.0

Q ss_pred             hhhHHHHHHHhCCceEEEEEeCCCCH------HHHHHhhcCCCCCCCCcEEEEEeCCchhhhcc
Q 039455          118 HKGINLIRWRLCRKRVLVVLDDVDQL------EQLQALAGNHDWFGFGSRIIITTRDEHVLKGH  175 (216)
Q Consensus       118 ~~~~~~l~~~l~~~~~llvlDd~~~~------~~~~~l~~~~~~~~~~~~il~tsr~~~~~~~~  175 (216)
                      +...-.+...+..++-+|+||+.-+.      ..+..++..+.  . +..||++||+.+++..+
T Consensus       143 e~Qrv~iA~aL~~~p~illlDEPts~LD~~~~~~l~~~l~~l~--~-g~tii~vsHdl~~~~~~  203 (538)
T 3ozx_A          143 GLQRLLVAASLLREADVYIFDQPSSYLDVRERMNMAKAIRELL--K-NKYVIVVDHDLIVLDYL  203 (538)
T ss_dssp             HHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHHHHHC--T-TSEEEEECSCHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHh--C-CCEEEEEEeChHHHHhh
Confidence            34455688888899999999987421      23444444443  2 68899999998776654

>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*

Probab=98.35  E-value=6.9e-07  Score=76.62  Aligned_cols=134  Identities=16%  Similarity=0.088  Sum_probs=71.2

Q ss_pred             CeeEEEEEecCCCcHHHHHHHHHHHhcCCCC------ceEeeccccccccccCchHHHH--------------HHHHHHH
Q 039455           48 DVRFIGICGMGGIGKTTLAKVLYNTLKDQFE------ASSFLANVREVSVTRGLVPLQE--------------QLLSEVL  107 (216)
Q Consensus        48 ~~~~i~I~G~~GiGKTtL~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~--------------~l~~~~~  107 (216)
                      .+.+++|.|++|+|||||++.+++.......      .+.++.--........+.....              .++..+.
T Consensus       381 ~Gei~~i~G~NGsGKSTLlk~l~Gl~~p~~G~I~~~~~i~~v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~l~~~~  460 (607)
T 3bk7_A          381 KGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKVEWDLTVAYKPQYIKAEYEGTVYELLSKIDSSKLNSNFYKTELLKPLG  460 (607)
T ss_dssp             TTCEEEEECCTTSSHHHHHHHHHTSSCCSBSCCCCCCCEEEECSSCCCCCSSBHHHHHHHHHHHHHHCHHHHHHTHHHHT
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEEeeEEEEEecCccCCCCCcHHHHHHhhhccCCCHHHHHHHHHHHcC
Confidence            4579999999999999999999986543211      1222211000000111111111              1111111


Q ss_pred             hhc-----cccccchhhhHHHHHHHhCCceEEEEEeCCCC------HHHHHHhhcCCCCCCCCcEEEEEeCCchhhhccC
Q 039455          108 MER-----NLIIWDVHKGINLIRWRLCRKRVLVVLDDVDQ------LEQLQALAGNHDWFGFGSRIIITTRDEHVLKGHG  176 (216)
Q Consensus       108 ~~~-----~~~~~~~~~~~~~l~~~l~~~~~llvlDd~~~------~~~~~~l~~~~~~~~~~~~il~tsr~~~~~~~~~  176 (216)
                      ...     ....+..+.....+..++..++-+|+||+.-+      ...+..++..+.. ..+..+|++||+...+..+ 
T Consensus       461 l~~~~~~~~~~LSGGe~QRv~iAraL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~l~~-~~g~tvi~vsHd~~~~~~~-  538 (607)
T 3bk7_A          461 IIDLYDRNVEDLSGGELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLME-KNEKTALVVEHDVLMIDYV-  538 (607)
T ss_dssp             CTTTTTSBGGGCCHHHHHHHHHHHHHTSCCSEEEEECTTTTCCHHHHHHHHHHHHHHHH-HTTCEEEEECSCHHHHHHH-
T ss_pred             CchHhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCccCCCHHHHHHHHHHHHHHHH-hCCCEEEEEeCCHHHHHHh-
Confidence            100     01112223345568889999999999998732      1233333333210 2367899999998877665 


Q ss_pred             CcceEEe
Q 039455          177 VTNIYKV  183 (216)
Q Consensus       177 ~~~~~~l  183 (216)
                      ++..+.+
T Consensus       539 adrv~vl  545 (607)
T 3bk7_A          539 SDRLIVF  545 (607)
T ss_dssp             CSEEEEE
T ss_pred             CCEEEEE
Confidence            3444444

>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}

Probab=98.34  E-value=1.4e-07  Score=79.87  Aligned_cols=64  Identities=16%  Similarity=0.054  Sum_probs=41.4

Q ss_pred             hhhhHHHHHHHhCCceEEEEEeCCCCH------HHHHHhhcCCCCCCCCcEEEEEeCCchhhhccCCcceEEe
Q 039455          117 VHKGINLIRWRLCRKRVLVVLDDVDQL------EQLQALAGNHDWFGFGSRIIITTRDEHVLKGHGVTNIYKV  183 (216)
Q Consensus       117 ~~~~~~~l~~~l~~~~~llvlDd~~~~------~~~~~l~~~~~~~~~~~~il~tsr~~~~~~~~~~~~~~~l  183 (216)
                      .+.....+...+..++-+|++|+.-+.      ..+..++..+.  ..+..||++||+.+++..+ ++..+.+
T Consensus       162 GekQRv~iAraL~~~P~lLlLDEPTs~LD~~~~~~l~~~L~~l~--~~g~tvi~vsHd~~~~~~~-~dri~vl  231 (538)
T 1yqt_A          162 GELQRVAIAAALLRNATFYFFDEPSSYLDIRQRLNAARAIRRLS--EEGKSVLVVEHDLAVLDYL-SDIIHVV  231 (538)
T ss_dssp             HHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHHHHHH--HTTCEEEEECSCHHHHHHH-CSEEEEE
T ss_pred             HHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHHH--hcCCEEEEEeCCHHHHHHh-CCEEEEE
Confidence            344455688888899999999987321      23344443332  2368899999998876655 3444333

>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*

Probab=98.34  E-value=5.3e-07  Score=70.91  Aligned_cols=62  Identities=13%  Similarity=0.123  Sum_probs=38.3

Q ss_pred             hhhhHHHHHHHhCCceEEEEEeCCCCH------HHHHHhhcCCCCCCCCcEEEEEeCCchhhhccCCcceEEe
Q 039455          117 VHKGINLIRWRLCRKRVLVVLDDVDQL------EQLQALAGNHDWFGFGSRIIITTRDEHVLKGHGVTNIYKV  183 (216)
Q Consensus       117 ~~~~~~~l~~~l~~~~~llvlDd~~~~------~~~~~l~~~~~~~~~~~~il~tsr~~~~~~~~~~~~~~~l  183 (216)
                      .+...-.+.+.+..++-+|+||+.-+.      ..+...+..+.   .+.++|++||+...+..  ++..+.+
T Consensus       194 GqrQRvaiARAL~~~p~iLlLDEPts~LD~~~~~~i~~~l~~l~---~~~Tvi~itH~l~~~~~--aD~i~vl  261 (306)
T 3nh6_A          194 GEKQRVAIARTILKAPGIILLDEATSALDTSNERAIQASLAKVC---ANRTTIVVAHRLSTVVN--ADQILVI  261 (306)
T ss_dssp             HHHHHHHHHHHHHHCCSEEEEECCSSCCCHHHHHHHHHHHHHHH---TTSEEEEECCSHHHHHT--CSEEEEE
T ss_pred             HHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHc---CCCEEEEEEcChHHHHc--CCEEEEE
Confidence            344455678888888889999987321      22333332221   35688999998877654  4444444

>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}

Probab=98.33  E-value=8.2e-07  Score=68.36  Aligned_cols=111  Identities=14%  Similarity=0.162  Sum_probs=62.3

Q ss_pred             CCeeEEEEEecCCCcHHHHHHHHHHHhcCCCCceEee-cc-ccccccccCchHHHHHHHHHHHhhccccccchhhhHHHH
Q 039455           47 DDVRFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFL-AN-VREVSVTRGLVPLQEQLLSEVLMERNLIIWDVHKGINLI  124 (216)
Q Consensus        47 ~~~~~i~I~G~~GiGKTtL~~~~~~~~~~~~~~~~~~-~~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l  124 (216)
                      ..+..++|+||+|+|||||++.+++.+...+...+++ .. .....  .....+        ........ +.......+
T Consensus        23 ~~g~~v~i~Gp~GsGKSTll~~l~g~~~~~~~G~I~~~g~~i~~~~--~~~~~~--------v~q~~~gl-~~~~l~~~l   91 (261)
T 2eyu_A           23 RKMGLILVTGPTGSGKSTTIASMIDYINQTKSYHIITIEDPIEYVF--KHKKSI--------VNQREVGE-DTKSFADAL   91 (261)
T ss_dssp             CSSEEEEEECSTTCSHHHHHHHHHHHHHHHCCCEEEEEESSCCSCC--CCSSSE--------EEEEEBTT-TBSCHHHHH
T ss_pred             CCCCEEEEECCCCccHHHHHHHHHHhCCCCCCCEEEEcCCcceeec--CCccee--------eeHHHhCC-CHHHHHHHH
Confidence            4468999999999999999999998765432222222 11 00000  000000        00000000 112235567


Q ss_pred             HHHhCCceEEEEEeCCCCHHHHHHhhcCCCCCCCCcEEEEEeCCchh
Q 039455          125 RWRLCRKRVLVVLDDVDQLEQLQALAGNHDWFGFGSRIIITTRDEHV  171 (216)
Q Consensus       125 ~~~l~~~~~llvlDd~~~~~~~~~l~~~~~~~~~~~~il~tsr~~~~  171 (216)
                      ...+..++-+|++|++...+....++...   ..+..+++|+|+.+.
T Consensus        92 a~aL~~~p~illlDEp~D~~~~~~~l~~~---~~g~~vl~t~H~~~~  135 (261)
T 2eyu_A           92 RAALREDPDVIFVGEMRDLETVETALRAA---ETGHLVFGTLHTNTA  135 (261)
T ss_dssp             HHHHHHCCSEEEESCCCSHHHHHHHHHHH---HTTCEEEEEECCSSH
T ss_pred             HHHHhhCCCEEEeCCCCCHHHHHHHHHHH---ccCCEEEEEeCcchH
Confidence            77777788899999996554444433221   246778999998643

>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}

Probab=98.32  E-value=6.6e-07  Score=75.78  Aligned_cols=134  Identities=16%  Similarity=0.105  Sum_probs=70.9

Q ss_pred             CeeEEEEEecCCCcHHHHHHHHHHHhcCCCC------ceEeeccccccccccCchHHHHHH----------HHHHHhhcc
Q 039455           48 DVRFIGICGMGGIGKTTLAKVLYNTLKDQFE------ASSFLANVREVSVTRGLVPLQEQL----------LSEVLMERN  111 (216)
Q Consensus        48 ~~~~i~I~G~~GiGKTtL~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~l----------~~~~~~~~~  111 (216)
                      .+.+++|.|++|+|||||++.+++.......      .+.++.--........+.......          ...+.....
T Consensus       311 ~Ge~~~i~G~NGsGKSTLlk~l~Gl~~p~~G~i~~~~~i~~v~Q~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~l~~~~  390 (538)
T 1yqt_A          311 KGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKIEWDLTVAYKPQYIKADYEGTVYELLSKIDASKLNSNFYKTELLKPLG  390 (538)
T ss_dssp             TTCEEEEECCTTSSHHHHHHHHHTSSCCSBCCCCCCCCEEEECSSCCCCCSSBHHHHHHHHHHHHHTCHHHHHHTTTTTT
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECceEEEEecCCcCCCCCcHHHHHHhhhccCCCHHHHHHHHHHHcC
Confidence            4579999999999999999999986543211      122221100000011111111111          011100000


Q ss_pred             ---------ccccchhhhHHHHHHHhCCceEEEEEeCCCC------HHHHHHhhcCCCCCCCCcEEEEEeCCchhhhccC
Q 039455          112 ---------LIIWDVHKGINLIRWRLCRKRVLVVLDDVDQ------LEQLQALAGNHDWFGFGSRIIITTRDEHVLKGHG  176 (216)
Q Consensus       112 ---------~~~~~~~~~~~~l~~~l~~~~~llvlDd~~~------~~~~~~l~~~~~~~~~~~~il~tsr~~~~~~~~~  176 (216)
                               ...+..+.....+..++..++-+|++|+.-+      ...+..++..+.. ..+..||++||+.+++..+ 
T Consensus       391 l~~~~~~~~~~LSGGe~qrv~lAraL~~~p~lLlLDEPt~~LD~~~~~~i~~~l~~l~~-~~g~tvi~vsHd~~~~~~~-  468 (538)
T 1yqt_A          391 IIDLYDREVNELSGGELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLME-KNEKTALVVEHDVLMIDYV-  468 (538)
T ss_dssp             CGGGTTSBGGGCCHHHHHHHHHHHHHTSCCSEEEEECTTTTCCHHHHHHHHHHHHHHHH-HHTCEEEEECSCHHHHHHH-
T ss_pred             ChhhhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHHH-hCCCEEEEEeCCHHHHHHh-
Confidence                     0112223344568889999999999998732      2333333332210 1367899999998877655 


Q ss_pred             CcceEEe
Q 039455          177 VTNIYKV  183 (216)
Q Consensus       177 ~~~~~~l  183 (216)
                      ++..+.+
T Consensus       469 ~drv~vl  475 (538)
T 1yqt_A          469 SDRLMVF  475 (538)
T ss_dssp             CSEEEEE
T ss_pred             CCEEEEE
Confidence            3444444

>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}

Probab=98.26  E-value=6.3e-07  Score=75.82  Aligned_cols=64  Identities=14%  Similarity=-0.001  Sum_probs=40.6

Q ss_pred             hhhHHHHHHHhCCceEEEEEeCCCCH------HHHHHhhcCCCCCCCCcEEEEEeCCchhhhccCCcceEEe
Q 039455          118 HKGINLIRWRLCRKRVLVVLDDVDQL------EQLQALAGNHDWFGFGSRIIITTRDEHVLKGHGVTNIYKV  183 (216)
Q Consensus       118 ~~~~~~l~~~l~~~~~llvlDd~~~~------~~~~~l~~~~~~~~~~~~il~tsr~~~~~~~~~~~~~~~l  183 (216)
                      +.....+..++..++-+|++|+.-+.      ..+..++..+.. ..+..||++||+.+.+..+ ++..+.+
T Consensus       390 q~QRv~iAraL~~~p~lLlLDEPT~gLD~~~~~~i~~~l~~l~~-~~g~tvi~vsHdl~~~~~~-aDri~vl  459 (538)
T 3ozx_A          390 ELQKLYIAATLAKEADLYVLDQPSSYLDVEERYIVAKAIKRVTR-ERKAVTFIIDHDLSIHDYI-ADRIIVF  459 (538)
T ss_dssp             HHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHHHHHHH-HTTCEEEEECSCHHHHHHH-CSEEEEE
T ss_pred             HHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHH-hCCCEEEEEeCCHHHHHHh-CCEEEEE
Confidence            33455688889999999999987321      233333332210 2367899999998877665 4444444

>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*

Probab=98.26  E-value=2.7e-07  Score=79.19  Aligned_cols=57  Identities=16%  Similarity=0.104  Sum_probs=38.4

Q ss_pred             hhhhHHHHHHHhCCceEEEEEeCCCCH------HHHHHhhcCCCCCCCCcEEEEEeCCchhhhcc
Q 039455          117 VHKGINLIRWRLCRKRVLVVLDDVDQL------EQLQALAGNHDWFGFGSRIIITTRDEHVLKGH  175 (216)
Q Consensus       117 ~~~~~~~l~~~l~~~~~llvlDd~~~~------~~~~~l~~~~~~~~~~~~il~tsr~~~~~~~~  175 (216)
                      .+...-.+...+..++-+|+||+.-+.      ..+..++..+.  ..+..||++||+..++..+
T Consensus       232 GekQRvaIAraL~~~P~lLlLDEPTs~LD~~~~~~l~~~L~~l~--~~g~tvIivsHdl~~~~~~  294 (607)
T 3bk7_A          232 GELQRVAIAAALLRKAHFYFFDEPSSYLDIRQRLKVARVIRRLA--NEGKAVLVVEHDLAVLDYL  294 (607)
T ss_dssp             HHHHHHHHHHHHHSCCSEEEEECTTTTCCHHHHHHHHHHHHHHH--HTTCEEEEECSCHHHHHHH
T ss_pred             HHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHHH--hcCCEEEEEecChHHHHhh
Confidence            334455688888899999999987321      23344443332  2368899999998776654

>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}

Probab=98.25  E-value=4.1e-06  Score=66.01  Aligned_cols=59  Identities=15%  Similarity=0.193  Sum_probs=39.2

Q ss_pred             ccccccc----hhHHHHHHHHHhcCCC-CeeEEEEEecCCCcHHHHHHHHHHHhc-CCCCceEee
Q 039455           25 VDGLVGI----ASRMEKMNGYLEAGLD-DVRFIGICGMGGIGKTTLAKVLYNTLK-DQFEASSFL   83 (216)
Q Consensus        25 ~~~~vgR----~~~~~~l~~~l~~~~~-~~~~i~I~G~~GiGKTtL~~~~~~~~~-~~~~~~~~~   83 (216)
                      -+.|++.    ...++.+..++..... ....+.|+|++|+|||+|+..++..+. .....+.++
T Consensus       123 fd~f~~~~~~~~~~~~~~~~~i~~~~~~~~~~lll~G~~GtGKT~La~aia~~~~~~~g~~v~~~  187 (308)
T 2qgz_A          123 LSDIDVNNASRMEAFSAILDFVEQYPSAEQKGLYLYGDMGIGKSYLLAAMAHELSEKKGVSTTLL  187 (308)
T ss_dssp             GGGSCCCSHHHHHHHHHHHHHHHHCSCSSCCEEEEECSTTSSHHHHHHHHHHHHHHHSCCCEEEE
T ss_pred             HhhCcCCChHHHHHHHHHHHHHHhccccCCceEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEE
Confidence            3456643    3344455666664322 257899999999999999999999776 443344444

>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*

Probab=98.24  E-value=4.7e-06  Score=70.48  Aligned_cols=124  Identities=14%  Similarity=0.039  Sum_probs=65.9

Q ss_pred             HHHHHhcCCCCeeEEEEEecCCCcHHHHHHHHHHHhcCCCCceEeeccccccccccCchHHHHHH------HHHHHhh--
Q 039455           38 MNGYLEAGLDDVRFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLANVREVSVTRGLVPLQEQL------LSEVLME--  109 (216)
Q Consensus        38 l~~~l~~~~~~~~~i~I~G~~GiGKTtL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l------~~~~~~~--  109 (216)
                      +...|..+-..+.+++|.|++|+|||||++.++......-..+.++. ...     ....+....      ...+...  
T Consensus       270 ld~vL~g~i~~G~i~~i~G~~GsGKSTLl~~l~g~~~~~G~~vi~~~-~ee-----~~~~l~~~~~~~g~~~~~~~~~g~  343 (525)
T 1tf7_A          270 LDEMCGGGFFKDSIILATGATGTGKTLLVSRFVENACANKERAILFA-YEE-----SRAQLLRNAYSWGMDFEEMERQNL  343 (525)
T ss_dssp             HHHHTTSSEESSCEEEEEECTTSSHHHHHHHHHHHHHTTTCCEEEEE-SSS-----CHHHHHHHHHTTSCCHHHHHHTTS
T ss_pred             HHHHhCCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHhCCCCEEEEE-EeC-----CHHHHHHHHHHcCCCHHHHHhCCC
Confidence            44444444345689999999999999999999986654322234442 111     111111111      0000000  


Q ss_pred             cc-----ccccch-hhhHHHHHHHhCCceEEEEEe-----CCC-----CHHHHHHhhcCCCCCCCCcEEEEEeCCc
Q 039455          110 RN-----LIIWDV-HKGINLIRWRLCRKRVLVVLD-----DVD-----QLEQLQALAGNHDWFGFGSRIIITTRDE  169 (216)
Q Consensus       110 ~~-----~~~~~~-~~~~~~l~~~l~~~~~llvlD-----d~~-----~~~~~~~l~~~~~~~~~~~~il~tsr~~  169 (216)
                      ..     ....+. +.....+..++..++-+||+|     |..     ....+..++..+.  ..+..+|++||+.
T Consensus       344 ~~~~~~~p~~LS~g~~q~~~~a~~l~~~p~llilDp~~~Ld~~~~~~~~~~~i~~ll~~l~--~~g~tvilvsh~~  417 (525)
T 1tf7_A          344 LKIVCAYPESAGLEDHLQIIKSEINDFKPARIAIDSLSALARGVSNNAFRQFVIGVTGYAK--QEEITGLFTNTSD  417 (525)
T ss_dssp             EEECCCCGGGSCHHHHHHHHHHHHHTTCCSEEEEECHHHHTSSSCHHHHHHHHHHHHHHHH--HTTCEEEEEEECS
T ss_pred             EEEEEeccccCCHHHHHHHHHHHHHhhCCCEEEEcChHHHHhhCChHHHHHHHHHHHHHHH--hCCCEEEEEECcc
Confidence            00     001122 233344666777889999999     222     2223333433332  3478899999986

>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}

Probab=98.21  E-value=1.6e-06  Score=74.35  Aligned_cols=133  Identities=14%  Similarity=0.061  Sum_probs=70.8

Q ss_pred             eEEEEEecCCCcHHHHHHHHHHHhcCCCC------ceEeeccccccccccCc--------------hHHHHHHHHHHHhh
Q 039455           50 RFIGICGMGGIGKTTLAKVLYNTLKDQFE------ASSFLANVREVSVTRGL--------------VPLQEQLLSEVLME  109 (216)
Q Consensus        50 ~~i~I~G~~GiGKTtL~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~--------------~~~~~~l~~~~~~~  109 (216)
                      .+++|.|++|+|||||++.+++.......      .+.++.-..........              ......++..+...
T Consensus       379 Eiv~iiG~NGsGKSTLlk~l~Gl~~p~~G~~~~~~~i~~~~q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~l~~l~l~  458 (608)
T 3j16_B          379 EILVMMGENGTGKTTLIKLLAGALKPDEGQDIPKLNVSMKPQKIAPKFPGTVRQLFFKKIRGQFLNPQFQTDVVKPLRID  458 (608)
T ss_dssp             CEEEEESCTTSSHHHHHHHHHTSSCCSBCCCCCSCCEEEECSSCCCCCCSBHHHHHHHHCSSTTTSHHHHHHTHHHHTST
T ss_pred             eEEEEECCCCCcHHHHHHHHhcCCCCCCCcCccCCcEEEecccccccCCccHHHHHHHHhhcccccHHHHHHHHHHcCCh
Confidence            67999999999999999999985543211      11121100000000000              01111222222111


Q ss_pred             -----ccccccchhhhHHHHHHHhCCceEEEEEeCCCCH------HHHHHhhcCCCCCCCCcEEEEEeCCchhhhccCCc
Q 039455          110 -----RNLIIWDVHKGINLIRWRLCRKRVLVVLDDVDQL------EQLQALAGNHDWFGFGSRIIITTRDEHVLKGHGVT  178 (216)
Q Consensus       110 -----~~~~~~~~~~~~~~l~~~l~~~~~llvlDd~~~~------~~~~~l~~~~~~~~~~~~il~tsr~~~~~~~~~~~  178 (216)
                           .....+..+.....+..++..++-+|++|+.-+.      ..+..++..+.. ..+..||++||+.+.+..+ ++
T Consensus       459 ~~~~~~~~~LSGGqkQRv~iAraL~~~p~lLlLDEPT~gLD~~~~~~i~~ll~~l~~-~~g~tviivtHdl~~~~~~-aD  536 (608)
T 3j16_B          459 DIIDQEVQHLSGGELQRVAIVLALGIPADIYLIDEPSAYLDSEQRIICSKVIRRFIL-HNKKTAFIVEHDFIMATYL-AD  536 (608)
T ss_dssp             TTSSSBSSSCCHHHHHHHHHHHHTTSCCSEEEECCTTTTCCHHHHHHHHHHHHHHHH-HHTCEEEEECSCHHHHHHH-CS
T ss_pred             hhhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEECCCCCCCHHHHHHHHHHHHHHHH-hCCCEEEEEeCCHHHHHHh-CC
Confidence                 1112223344455789999999999999987321      233333332210 2367899999998877665 44


Q ss_pred             ceEEec
Q 039455          179 NIYKVR  184 (216)
Q Consensus       179 ~~~~l~  184 (216)
                      ..+.+.
T Consensus       537 rvivl~  542 (608)
T 3j16_B          537 KVIVFE  542 (608)
T ss_dssp             EEEECE
T ss_pred             EEEEEe
Confidence            444443

>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*

Probab=98.21  E-value=4.5e-06  Score=67.48  Aligned_cols=111  Identities=14%  Similarity=0.123  Sum_probs=63.2

Q ss_pred             CCeeEEEEEecCCCcHHHHHHHHHHHhcCC-CCceEeeccccccccccCchHHHHHHHHHHHhhccccccchhhhHHHHH
Q 039455           47 DDVRFIGICGMGGIGKTTLAKVLYNTLKDQ-FEASSFLANVREVSVTRGLVPLQEQLLSEVLMERNLIIWDVHKGINLIR  125 (216)
Q Consensus        47 ~~~~~i~I~G~~GiGKTtL~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~  125 (216)
                      ..+..++|+|++|+|||||++.+++.+... ...+.++.....    ......   +  .+..+.... .+.......+.
T Consensus       134 ~~g~~i~ivG~~GsGKTTll~~l~~~~~~~~~g~I~~~e~~~e----~~~~~~---~--~~v~Q~~~g-~~~~~~~~~l~  203 (372)
T 2ewv_A          134 RKMGLILVTGPTGSGKSTTIASMIDYINQTKSYHIITIEDPIE----YVFKHK---K--SIVNQREVG-EDTKSFADALR  203 (372)
T ss_dssp             SSSEEEEEECSSSSSHHHHHHHHHHHHHHHSCCEEEEEESSCC----SCCCCS---S--SEEEEEEBT-TTBSCSHHHHH
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHHhhcCcCCCcEEEEecccHh----hhhccC---c--eEEEeeecC-CCHHHHHHHHH
Confidence            345799999999999999999999876543 222223221000    000000   0  000000000 01123356778


Q ss_pred             HHhCCceEEEEEeCCCCHHHHHHhhcCCCCCCCCcEEEEEeCCch
Q 039455          126 WRLCRKRVLVVLDDVDQLEQLQALAGNHDWFGFGSRIIITTRDEH  170 (216)
Q Consensus       126 ~~l~~~~~llvlDd~~~~~~~~~l~~~~~~~~~~~~il~tsr~~~  170 (216)
                      ..+..++-+|++|++...+.+...+...   ..|..++.|+|..+
T Consensus       204 ~~L~~~pd~illdE~~d~e~~~~~l~~~---~~g~~vi~t~H~~~  245 (372)
T 2ewv_A          204 AALREDPDVIFVGEMRDLETVETALRAA---ETGHLVFGTLHTNT  245 (372)
T ss_dssp             HHTTSCCSEEEESCCCSHHHHHHHHHHH---TTTCEEEECCCCCS
T ss_pred             HHhhhCcCEEEECCCCCHHHHHHHHHHH---hcCCEEEEEECcch
Confidence            8888888899999997665554443322   24567888888754

>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*

Probab=98.18  E-value=1.9e-06  Score=68.67  Aligned_cols=53  Identities=30%  Similarity=0.481  Sum_probs=41.6

Q ss_pred             CCcccccccchhHHHHHHHHHhcC---CCCeeEEEEEecCCCcHHHHHHHHHHHhc
Q 039455           22 PSAVDGLVGIASRMEKMNGYLEAG---LDDVRFIGICGMGGIGKTTLAKVLYNTLK   74 (216)
Q Consensus        22 ~~~~~~~vgR~~~~~~l~~~l~~~---~~~~~~i~I~G~~GiGKTtL~~~~~~~~~   74 (216)
                      |..-..++|.+..++.+...+...   +.....++|+||+|+|||||++.+++.+.
T Consensus        21 ~~~l~~~~g~~~~~~~l~~~i~~~~~~~~~~~~~ll~Gp~G~GKTTLa~~ia~~l~   76 (334)
T 1in4_A           21 PKSLDEFIGQENVKKKLSLALEAAKMRGEVLDHVLLAGPPGLGKTTLAHIIASELQ   76 (334)
T ss_dssp             CSSGGGCCSCHHHHHHHHHHHHHHHHHTCCCCCEEEESSTTSSHHHHHHHHHHHHT
T ss_pred             CccHHHccCcHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCcHHHHHHHHHHHhC
Confidence            445567899998888887776532   22346799999999999999999999874

>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A

Probab=98.18  E-value=9.5e-07  Score=70.32  Aligned_cols=106  Identities=13%  Similarity=0.119  Sum_probs=63.5

Q ss_pred             eeEEEEEecCCCcHHHHHHHHHHHhcCCCCceEeeccccccccccCchHHHHHHHHHHHhhcccccc--chhhhHHHHHH
Q 039455           49 VRFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLANVREVSVTRGLVPLQEQLLSEVLMERNLIIW--DVHKGINLIRW  126 (216)
Q Consensus        49 ~~~i~I~G~~GiGKTtL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~--~~~~~~~~l~~  126 (216)
                      +..++|+|++|+|||||++.+++.+... ...+.+......... ...             ......  ........+..
T Consensus       171 g~~v~i~G~~GsGKTTll~~l~g~~~~~-~g~i~i~~~~e~~~~-~~~-------------~~i~~~~ggg~~~r~~la~  235 (330)
T 2pt7_A          171 GKNVIVCGGTGSGKTTYIKSIMEFIPKE-ERIISIEDTEEIVFK-HHK-------------NYTQLFFGGNITSADCLKS  235 (330)
T ss_dssp             TCCEEEEESTTSCHHHHHHHGGGGSCTT-SCEEEEESSCCCCCS-SCS-------------SEEEEECBTTBCHHHHHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHhCCCcCC-CcEEEECCeeccccc-cch-------------hEEEEEeCCChhHHHHHHH
Confidence            3689999999999999999999876543 333333321111000 000             000000  23445667888


Q ss_pred             HhCCceEEEEEeCCCCHHHHHHhhcCCCCCCCCcEEEEEeCCchhh
Q 039455          127 RLCRKRVLVVLDDVDQLEQLQALAGNHDWFGFGSRIIITTRDEHVL  172 (216)
Q Consensus       127 ~l~~~~~llvlDd~~~~~~~~~l~~~~~~~~~~~~il~tsr~~~~~  172 (216)
                      .+..++-+|++|++.+.+.++ ++..+.  ..+..+++|+|..+..
T Consensus       236 aL~~~p~ilildE~~~~e~~~-~l~~~~--~g~~tvi~t~H~~~~~  278 (330)
T 2pt7_A          236 CLRMRPDRIILGELRSSEAYD-FYNVLC--SGHKGTLTTLHAGSSE  278 (330)
T ss_dssp             HTTSCCSEEEECCCCSTHHHH-HHHHHH--TTCCCEEEEEECSSHH
T ss_pred             HhhhCCCEEEEcCCChHHHHH-HHHHHh--cCCCEEEEEEcccHHH
Confidence            888899999999998754433 333322  1223588899987643

>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A

Probab=98.16  E-value=7.2e-06  Score=73.48  Aligned_cols=129  Identities=19%  Similarity=0.232  Sum_probs=69.8

Q ss_pred             CeeEEEEEecCCCcHHHHHHHHHH-HhcCCCC-----ceEeec-cccccccccCc-----------hHHHHHHHHHHHh-
Q 039455           48 DVRFIGICGMGGIGKTTLAKVLYN-TLKDQFE-----ASSFLA-NVREVSVTRGL-----------VPLQEQLLSEVLM-  108 (216)
Q Consensus        48 ~~~~i~I~G~~GiGKTtL~~~~~~-~~~~~~~-----~~~~~~-~~~~~~~~~~~-----------~~~~~~l~~~~~~-  108 (216)
                      .+..++|+|++|+|||||++.+++ .+. .++     ...++. ...........           ......++..+.- 
T Consensus       460 ~Ge~v~LiGpNGsGKSTLLk~LagG~i~-g~~~~~~~~~~~v~q~~~~~~~~ltv~e~l~~~~~~~~~~v~~~L~~lgL~  538 (986)
T 2iw3_A          460 RARRYGICGPNGCGKSTLMRAIANGQVD-GFPTQEECRTVYVEHDIDGTHSDTSVLDFVFESGVGTKEAIKDKLIEFGFT  538 (986)
T ss_dssp             TTCEEEEECSTTSSHHHHHHHHHHTCST-TCCCTTTSCEEETTCCCCCCCTTSBHHHHHHTTCSSCHHHHHHHHHHTTCC
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCCcC-CCccccceeEEEEcccccccccCCcHHHHHHHhhcCHHHHHHHHHHHcCCC
Confidence            357899999999999999999984 221 111     111221 00000000010           1112223332221 


Q ss_pred             -----hccccccchhhhHHHHHHHhCCceEEEEEeCCCC------HHHHHHhhcCCCCCCCCcEEEEEeCCchhhhccCC
Q 039455          109 -----ERNLIIWDVHKGINLIRWRLCRKRVLVVLDDVDQ------LEQLQALAGNHDWFGFGSRIIITTRDEHVLKGHGV  177 (216)
Q Consensus       109 -----~~~~~~~~~~~~~~~l~~~l~~~~~llvlDd~~~------~~~~~~l~~~~~~~~~~~~il~tsr~~~~~~~~~~  177 (216)
                           ......+..+...-.+...+..++-+|+||+.-+      ...+..++..     .+..+|++||+..+...+ +
T Consensus       539 ~~~~~~~~~~LSGGqkQRvaLArAL~~~P~lLLLDEPTs~LD~~~~~~l~~~L~~-----~g~tvIivSHdl~~l~~~-a  612 (986)
T 2iw3_A          539 DEMIAMPISALSGGWKMKLALARAVLRNADILLLDEPTNHLDTVNVAWLVNYLNT-----CGITSITISHDSVFLDNV-C  612 (986)
T ss_dssp             HHHHHSBGGGCCHHHHHHHHHHHHHHTTCSEEEEESTTTTCCHHHHHHHHHHHHH-----SCSEEEEECSCHHHHHHH-C
T ss_pred             hhhhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEECCccCCCHHHHHHHHHHHHh-----CCCEEEEEECCHHHHHHh-C
Confidence                 1111223344455568888889999999998732      2334444433     367899999998776654 3


Q ss_pred             cceEEe
Q 039455          178 TNIYKV  183 (216)
Q Consensus       178 ~~~~~l  183 (216)
                      ++.+.+
T Consensus       613 drii~L  618 (986)
T 2iw3_A          613 EYIINY  618 (986)
T ss_dssp             SEEEEE
T ss_pred             CEEEEE
Confidence            333333

>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}

Probab=98.16  E-value=9.1e-06  Score=69.57  Aligned_cols=62  Identities=15%  Similarity=0.204  Sum_probs=39.5

Q ss_pred             hhhHHHHHHHhCCceEEEEEeCCCC------HHHHHHhhcCCCCCCCCcEEEEEeCCchhhhccCCcceEEec
Q 039455          118 HKGINLIRWRLCRKRVLVVLDDVDQ------LEQLQALAGNHDWFGFGSRIIITTRDEHVLKGHGVTNIYKVR  184 (216)
Q Consensus       118 ~~~~~~l~~~l~~~~~llvlDd~~~------~~~~~~l~~~~~~~~~~~~il~tsr~~~~~~~~~~~~~~~l~  184 (216)
                      +...-.+.+.+-.++-++++||.-+      ...+.+.+..+.   .+..+|++||+.+....  +++.+.++
T Consensus       485 q~qr~~iAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~---~~~tvi~itH~~~~~~~--~d~i~~l~  552 (582)
T 3b5x_A          485 QRQRVAIARALLRDAPVLILDEATSALDTESERAIQAALDELQ---KNKTVLVIAHRLSTIEQ--ADEILVVD  552 (582)
T ss_pred             HHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHc---CCCEEEEEecCHHHHHh--CCEEEEEE
Confidence            3444467888888999999998732      233444443332   36789999998876653  45555443

>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A

Probab=98.09  E-value=1.5e-05  Score=61.16  Aligned_cols=37  Identities=22%  Similarity=0.307  Sum_probs=28.2

Q ss_pred             HHHHHHhcCCCCeeEEEEEecCCCcHHHHHHHHHHHh
Q 039455           37 KMNGYLEAGLDDVRFIGICGMGGIGKTTLAKVLYNTL   73 (216)
Q Consensus        37 ~l~~~l~~~~~~~~~i~I~G~~GiGKTtL~~~~~~~~   73 (216)
                      .+..|+....+....++++||+|+|||.++..+++..
T Consensus        92 ~l~~~l~~~~~~~n~~~l~GppgtGKt~~a~ala~~~  128 (267)
T 1u0j_A           92 VFLGWATKKFGKRNTIWLFGPATTGKTNIAEAIAHTV  128 (267)
T ss_dssp             HHHHHHTTCSTTCCEEEEECSTTSSHHHHHHHHHHHS
T ss_pred             HHHHHHhCCCCCCcEEEEECCCCCCHHHHHHHHHhhh
Confidence            3455555432445689999999999999999999854

>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}

Probab=98.07  E-value=5.6e-06  Score=66.35  Aligned_cols=50  Identities=22%  Similarity=0.196  Sum_probs=37.6

Q ss_pred             HHHHHHHHh-cCCCCeeEEEEEecCCCcHHHHHHHHHHHhcCCCCceEeec
Q 039455           35 MEKMNGYLE-AGLDDVRFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLA   84 (216)
Q Consensus        35 ~~~l~~~l~-~~~~~~~~i~I~G~~GiGKTtL~~~~~~~~~~~~~~~~~~~   84 (216)
                      ...|...|. .+-+.+.++.|.|++|+|||||+..++..+...-..+.|++
T Consensus        46 ~~~LD~~Lg~GGi~~G~i~~I~GppGsGKSTLal~la~~~~~~gg~VlyId   96 (356)
T 3hr8_A           46 SLAIDIATGVGGYPRGRIVEIFGQESSGKTTLALHAIAEAQKMGGVAAFID   96 (356)
T ss_dssp             CHHHHHHTSSSSEETTEEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred             CHHHHHHhccCCccCCcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEe
Confidence            345666665 44455689999999999999999999987655444566765

>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}

Probab=98.06  E-value=4.8e-06  Score=61.73  Aligned_cols=41  Identities=22%  Similarity=0.314  Sum_probs=30.8

Q ss_pred             HHHHHHHHHhcCCCCeeEEEEEecCCCcHHHHHHHHHHHhc
Q 039455           34 RMEKMNGYLEAGLDDVRFIGICGMGGIGKTTLAKVLYNTLK   74 (216)
Q Consensus        34 ~~~~l~~~l~~~~~~~~~i~I~G~~GiGKTtL~~~~~~~~~   74 (216)
                      -++.|.+.+......+..++|.|++|+|||||++.++..+.
T Consensus         7 ~~~~~~~~~~~~~~~g~~v~I~G~sGsGKSTl~~~l~~~~~   47 (208)
T 3c8u_A            7 LCQGVLERLDPRQPGRQLVALSGAPGSGKSTLSNPLAAALS   47 (208)
T ss_dssp             HHHHHHHHSCTTCCSCEEEEEECCTTSCTHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhcCCCCeEEEEECCCCCCHHHHHHHHHHHHh
Confidence            34444444433235678999999999999999999998765

>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6

Probab=98.06  E-value=1.1e-05  Score=59.51  Aligned_cols=46  Identities=30%  Similarity=0.372  Sum_probs=36.2

Q ss_pred             cchhHHHHHHHHHhcC-CCCeeEEEEEecCCCcHHHHHHHHHHHhcC
Q 039455           30 GIASRMEKMNGYLEAG-LDDVRFIGICGMGGIGKTTLAKVLYNTLKD   75 (216)
Q Consensus        30 gR~~~~~~l~~~l~~~-~~~~~~i~I~G~~GiGKTtL~~~~~~~~~~   75 (216)
                      .|++.++.|...+... ...+.+++|+|++|+||||+++.+...+..
T Consensus         2 ~~~~~~~~l~~~~~~~~~~~~~~i~i~G~~GsGKstl~~~l~~~~~~   48 (201)
T 1rz3_A            2 ELRDRIDFLCKTILAIKTAGRLVLGIDGLSRSGKTTLANQLSQTLRE   48 (201)
T ss_dssp             CHHHHHHHHHHHHHTSCCSSSEEEEEEECTTSSHHHHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHHhccCCCeEEEEECCCCCCHHHHHHHHHHHHhh
Confidence            4666777777766543 345689999999999999999999987643

>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A

Probab=98.05  E-value=1.7e-05  Score=61.40  Aligned_cols=28  Identities=25%  Similarity=0.275  Sum_probs=24.2

Q ss_pred             CeeEEEEEecCCCcHHHHHHHHHHHhcC
Q 039455           48 DVRFIGICGMGGIGKTTLAKVLYNTLKD   75 (216)
Q Consensus        48 ~~~~i~I~G~~GiGKTtL~~~~~~~~~~   75 (216)
                      .+.+++|.|++|+|||||+..++..+..
T Consensus        29 ~G~i~~i~G~~GsGKTtl~~~l~~~~~~   56 (279)
T 1nlf_A           29 AGTVGALVSPGGAGKSMLALQLAAQIAG   56 (279)
T ss_dssp             TTSEEEEEESTTSSHHHHHHHHHHHHHT
T ss_pred             CCCEEEEEcCCCCCHHHHHHHHHHHHhc
Confidence            4579999999999999999999976543

>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A

Probab=98.02  E-value=6.4e-06  Score=70.44  Aligned_cols=63  Identities=11%  Similarity=0.079  Sum_probs=39.5

Q ss_pred             hhhhHHHHHHHhCCceEEEEEeCCCCH------HHHHHhhcCCCCCCCCcEEEEEeCCchhhhccCCcceEEec
Q 039455          117 VHKGINLIRWRLCRKRVLVVLDDVDQL------EQLQALAGNHDWFGFGSRIIITTRDEHVLKGHGVTNIYKVR  184 (216)
Q Consensus       117 ~~~~~~~l~~~l~~~~~llvlDd~~~~------~~~~~l~~~~~~~~~~~~il~tsr~~~~~~~~~~~~~~~l~  184 (216)
                      .+...-.+.+.+-.++-++++||.-+.      ..+...+..+   ..+.++|++||+.+....  +++.+.++
T Consensus       481 Gq~Qrv~lAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~---~~~~t~i~itH~l~~~~~--~d~i~~l~  549 (578)
T 4a82_A          481 GQKQRLSIARIFLNNPPILILDEATSALDLESESIIQEALDVL---SKDRTTLIVAHRLSTITH--ADKIVVIE  549 (578)
T ss_dssp             HHHHHHHHHHHHHHCCSEEEEESTTTTCCHHHHHHHHHHHHHH---TTTSEEEEECSSGGGTTT--CSEEEEEE
T ss_pred             HHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHH---cCCCEEEEEecCHHHHHc--CCEEEEEE
Confidence            344455678888888899999988321      2333333222   235788999998877654  55555553

>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11

Probab=98.00  E-value=2.2e-05  Score=59.17  Aligned_cols=48  Identities=17%  Similarity=0.241  Sum_probs=33.3

Q ss_pred             HHHHHHhcCCCCeeEEEEEecCCCcHHHHHHHHHHHhcC------CCCceEeec
Q 039455           37 KMNGYLEAGLDDVRFIGICGMGGIGKTTLAKVLYNTLKD------QFEASSFLA   84 (216)
Q Consensus        37 ~l~~~l~~~~~~~~~i~I~G~~GiGKTtL~~~~~~~~~~------~~~~~~~~~   84 (216)
                      .|..++..+-+.+.++.|.|++|+|||||+..++.....      ....+.|+.
T Consensus        12 ~LD~~l~ggi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~g~~~~~~~~i~   65 (243)
T 1n0w_A           12 ELDKLLQGGIETGSITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYID   65 (243)
T ss_dssp             HHHHHTTTSEETTSEEEEECCTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEE
T ss_pred             HHHHhhcCCCcCCeEEEEECCCCCcHHHHHHHHHHHHhCchhcCCCCCeEEEEE
Confidence            344445444345689999999999999999999985322      124566664

>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}

Probab=97.99  E-value=5e-06  Score=71.40  Aligned_cols=62  Identities=18%  Similarity=0.193  Sum_probs=39.0

Q ss_pred             hhhHHHHHHHhCCceEEEEEeCCCCH------HHHHHhhcCCCCCCCCcEEEEEeCCchhhhccCCcceEEec
Q 039455          118 HKGINLIRWRLCRKRVLVVLDDVDQL------EQLQALAGNHDWFGFGSRIIITTRDEHVLKGHGVTNIYKVR  184 (216)
Q Consensus       118 ~~~~~~l~~~l~~~~~llvlDd~~~~------~~~~~l~~~~~~~~~~~~il~tsr~~~~~~~~~~~~~~~l~  184 (216)
                      +...-.+.+.+-.++-++++|+.-+.      ..+...+..+   ..+.++|++||+.+....  +++.+.++
T Consensus       496 q~Qrv~iAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~---~~~~t~i~itH~l~~~~~--~d~i~~l~  563 (598)
T 3qf4_B          496 QRQLLAITRAFLANPKILILDEATSNVDTKTEKSIQAAMWKL---MEGKTSIIIAHRLNTIKN--ADLIIVLR  563 (598)
T ss_dssp             HHHHHHHHHHHHTCCSEEEECCCCTTCCHHHHHHHHHHHHHH---HTTSEEEEESCCTTHHHH--CSEEEEEC
T ss_pred             HHHHHHHHHHHhcCCCEEEEECCccCCCHHHHHHHHHHHHHH---cCCCEEEEEecCHHHHHc--CCEEEEEE
Confidence            33444678888888889999988321      2233333222   236789999998876654  45555543

>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}

Probab=97.98  E-value=8.8e-06  Score=69.70  Aligned_cols=62  Identities=18%  Similarity=0.100  Sum_probs=39.4

Q ss_pred             hhhhHHHHHHHhCCceEEEEEeCCCCH------HHHHHhhcCCCCCCCCcEEEEEeCCchhhhccCCcceEEe
Q 039455          117 VHKGINLIRWRLCRKRVLVVLDDVDQL------EQLQALAGNHDWFGFGSRIIITTRDEHVLKGHGVTNIYKV  183 (216)
Q Consensus       117 ~~~~~~~l~~~l~~~~~llvlDd~~~~------~~~~~l~~~~~~~~~~~~il~tsr~~~~~~~~~~~~~~~l  183 (216)
                      .+...-.+.+.+-.++-++++||.-+.      ..+.+.+..+   ..+.++|++||+.+....  +++.+.+
T Consensus       483 GqrQrv~lARal~~~p~illlDEpts~LD~~~~~~i~~~l~~~---~~~~tvi~itH~l~~~~~--~d~i~vl  550 (587)
T 3qf4_A          483 GQKQRLSIARALVKKPKVLILDDCTSSVDPITEKRILDGLKRY---TKGCTTFIITQKIPTALL--ADKILVL  550 (587)
T ss_dssp             HHHHHHHHHHHHHTCCSEEEEESCCTTSCHHHHHHHHHHHHHH---STTCEEEEEESCHHHHTT--SSEEEEE
T ss_pred             HHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHh---CCCCEEEEEecChHHHHh--CCEEEEE
Confidence            344455688888888999999988422      2333333222   246889999998876653  4555544

>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*

Probab=97.98  E-value=1.1e-05  Score=58.88  Aligned_cols=114  Identities=18%  Similarity=0.035  Sum_probs=59.9

Q ss_pred             CeeEEEEEecCCCcHHHHHHHHHHHhcCCCCceEeeccccccccccCchHHHHHHHHHHH-------hhccccc------
Q 039455           48 DVRFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLANVREVSVTRGLVPLQEQLLSEVL-------MERNLII------  114 (216)
Q Consensus        48 ~~~~i~I~G~~GiGKTtL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-------~~~~~~~------  114 (216)
                      ....|.|++.+|.||||+|-.++-+...+-..+.++.....     ....-...++..+.       ....+..      
T Consensus        27 ~~g~i~v~tG~GkGKTTaA~GlalRA~g~G~rV~~vQF~Kg-----~~~~gE~~~l~~L~v~~~~~g~gf~~~~~~~~~~  101 (196)
T 1g5t_A           27 ERGIIIVFTGNGKGKTTAAFGTAARAVGHGKNVGVVQFIKG-----TWPNGERNLLEPHGVEFQVMATGFTWETQNREAD  101 (196)
T ss_dssp             CCCCEEEEESSSSCHHHHHHHHHHHHHHTTCCEEEEESSCC-----SSCCHHHHHHGGGTCEEEECCTTCCCCGGGHHHH
T ss_pred             cCceEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEEeeCC-----CCCccHHHHHHhCCcEEEEcccccccCCCCcHHH
Confidence            34678888888899999999998876655444444421111     01111112222220       0000000      


Q ss_pred             -cchhhhHHHHHHHhCCc-eEEEEEeCCC--------CHHHHHHhhcCCCCCCCCcEEEEEeCCc
Q 039455          115 -WDVHKGINLIRWRLCRK-RVLVVLDDVD--------QLEQLQALAGNHDWFGFGSRIIITTRDE  169 (216)
Q Consensus       115 -~~~~~~~~~l~~~l~~~-~~llvlDd~~--------~~~~~~~l~~~~~~~~~~~~il~tsr~~  169 (216)
                       ...........+.+.+. --+||||++.        ..+++..++..-   .....+|+|+|..
T Consensus       102 ~~~a~~~l~~a~~~l~~~~yDlvILDEi~~al~~g~l~~~ev~~~l~~R---p~~~~vIlTGr~a  163 (196)
T 1g5t_A          102 TAACMAVWQHGKRMLADPLLDMVVLDELTYMVAYDYLPLEEVISALNAR---PGHQTVIITGRGC  163 (196)
T ss_dssp             HHHHHHHHHHHHHHTTCTTCSEEEEETHHHHHHTTSSCHHHHHHHHHTS---CTTCEEEEECSSC
T ss_pred             HHHHHHHHHHHHHHHhcCCCCEEEEeCCCccccCCCCCHHHHHHHHHhC---cCCCEEEEECCCC
Confidence             01112233345555544 4599999882        334444444332   3567899999986

>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10

Probab=97.95  E-value=5.5e-05  Score=59.45  Aligned_cols=52  Identities=23%  Similarity=0.186  Sum_probs=35.8

Q ss_pred             hhHHHHHHHHHhcC------CCCeeEEEEEecCCCcHHHHHHHHHHHhcCCCCceEee
Q 039455           32 ASRMEKMNGYLEAG------LDDVRFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFL   83 (216)
Q Consensus        32 ~~~~~~l~~~l~~~------~~~~~~i~I~G~~GiGKTtL~~~~~~~~~~~~~~~~~~   83 (216)
                      ....++|.+.+...      ...+.+++|+|++|+||||++..++..+......+.++
T Consensus        81 ~~~~~~l~~~l~~~~~~~~~~~~~~vi~ivG~~GsGKTTl~~~LA~~l~~~g~kV~lv  138 (306)
T 1vma_A           81 ESLKEIILEILNFDTKLNVPPEPPFVIMVVGVNGTGKTTSCGKLAKMFVDEGKSVVLA  138 (306)
T ss_dssp             HHHHHHHHHHTCSCCCCCCCSSSCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEE
T ss_pred             HHHHHHHHHHhCCCCCCcccCCCCeEEEEEcCCCChHHHHHHHHHHHHHhcCCEEEEE
Confidence            34444555555422      13467999999999999999999999776543444444

>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}

Probab=97.95  E-value=7e-06  Score=65.14  Aligned_cols=47  Identities=21%  Similarity=0.191  Sum_probs=39.7

Q ss_pred             ccccccchhHHHHHHHHHhcCCCCeeEEEEEecCCCcHHHHHHHHHHHhcC
Q 039455           25 VDGLVGIASRMEKMNGYLEAGLDDVRFIGICGMGGIGKTTLAKVLYNTLKD   75 (216)
Q Consensus        25 ~~~~vgR~~~~~~l~~~l~~~~~~~~~i~I~G~~GiGKTtL~~~~~~~~~~   75 (216)
                      ...++|++..++.+...+..+    ..+.++|++|+|||+|++.++.....
T Consensus        26 ~~~i~g~~~~~~~l~~~l~~~----~~vll~G~pGtGKT~la~~la~~~~~   72 (331)
T 2r44_A           26 GKVVVGQKYMINRLLIGICTG----GHILLEGVPGLAKTLSVNTLAKTMDL   72 (331)
T ss_dssp             TTTCCSCHHHHHHHHHHHHHT----CCEEEESCCCHHHHHHHHHHHHHTTC
T ss_pred             ccceeCcHHHHHHHHHHHHcC----CeEEEECCCCCcHHHHHHHHHHHhCC
Confidence            356899999999988877653    57999999999999999999987643

>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A

Probab=97.94  E-value=9.6e-06  Score=69.41  Aligned_cols=62  Identities=15%  Similarity=0.187  Sum_probs=38.9

Q ss_pred             hhhHHHHHHHhCCceEEEEEeCCCCH------HHHHHhhcCCCCCCCCcEEEEEeCCchhhhccCCcceEEec
Q 039455          118 HKGINLIRWRLCRKRVLVVLDDVDQL------EQLQALAGNHDWFGFGSRIIITTRDEHVLKGHGVTNIYKVR  184 (216)
Q Consensus       118 ~~~~~~l~~~l~~~~~llvlDd~~~~------~~~~~l~~~~~~~~~~~~il~tsr~~~~~~~~~~~~~~~l~  184 (216)
                      +...-.+.+.+-.++-++++|+.-+.      ..+.+.+..+.   .+..+|++||+.+....  +++.+.++
T Consensus       485 q~qrl~iAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~---~~~tvi~itH~~~~~~~--~d~i~~l~  552 (582)
T 3b60_A          485 QRQRIAIARALLRDSPILILDEATSALDTESERAIQAALDELQ---KNRTSLVIAHRLSTIEQ--ADEIVVVE  552 (582)
T ss_dssp             HHHHHHHHHHHHHCCSEEEEETTTSSCCHHHHHHHHHHHHHHH---TTSEEEEECSCGGGTTT--CSEEEEEE
T ss_pred             HHHHHHHHHHHHhCCCEEEEECccccCCHHHHHHHHHHHHHHh---CCCEEEEEeccHHHHHh--CCEEEEEE
Confidence            34444577777788889999988321      23333333322   36789999998876553  55555543

>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*

Probab=97.94  E-value=9.7e-06  Score=63.82  Aligned_cols=25  Identities=28%  Similarity=0.396  Sum_probs=22.2

Q ss_pred             CeeEEEEEecCCCcHHHHHHHHHHH
Q 039455           48 DVRFIGICGMGGIGKTTLAKVLYNT   72 (216)
Q Consensus        48 ~~~~i~I~G~~GiGKTtL~~~~~~~   72 (216)
                      .++.+.|+|++|+|||+|+.+++..
T Consensus       122 ~gsviLI~GpPGsGKTtLAlqlA~~  146 (331)
T 2vhj_A          122 ASGMVIVTGKGNSGKTPLVHALGEA  146 (331)
T ss_dssp             ESEEEEEECSCSSSHHHHHHHHHHH
T ss_pred             CCcEEEEEcCCCCCHHHHHHHHHHh
Confidence            3467899999999999999999876

>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}

Probab=97.92  E-value=1e-05  Score=70.32  Aligned_cols=62  Identities=16%  Similarity=0.247  Sum_probs=41.5

Q ss_pred             hhhHHHHHHHhCCceE--EEEEeCCC------CHHHHHHhhcCCCCCCCCcEEEEEeCCchhhhccCCcceEEe
Q 039455          118 HKGINLIRWRLCRKRV--LVVLDDVD------QLEQLQALAGNHDWFGFGSRIIITTRDEHVLKGHGVTNIYKV  183 (216)
Q Consensus       118 ~~~~~~l~~~l~~~~~--llvlDd~~------~~~~~~~l~~~~~~~~~~~~il~tsr~~~~~~~~~~~~~~~l  183 (216)
                      +.....+.+.+..++-  +|++|+.-      ....+..++..+.  ..+..||++||+.++...  ++..+.+
T Consensus       207 e~QRv~iArAL~~~p~~~lLlLDEPtsgLD~~~~~~l~~~l~~l~--~~g~tvi~vtHd~~~~~~--~d~ii~l  276 (670)
T 3ux8_A          207 EAQRIRLATQIGSRLTGVLYVLDEPSIGLHQRDNDRLIATLKSMR--DLGNTLIVVEHDEDTMLA--ADYLIDI  276 (670)
T ss_dssp             HHHHHHHHHHHHTCCCSCEEEEECTTTTCCGGGHHHHHHHHHHHH--HTTCEEEEECCCHHHHHH--CSEEEEE
T ss_pred             HHHHHHHHHHHhhCCCCCEEEEECCccCCCHHHHHHHHHHHHHHH--HcCCEEEEEeCCHHHHhh--CCEEEEe
Confidence            3445567888877766  99999773      3344555544443  246889999999887553  5666666

>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A

Probab=97.91  E-value=2e-05  Score=70.70  Aligned_cols=61  Identities=20%  Similarity=0.221  Sum_probs=40.7

Q ss_pred             hhhhHHHHHHHhCCceEEEEEeCCC------CHHHHHHhhcCCCCCCCCcEEEEEeCCchhhhccCCcceEEe
Q 039455          117 VHKGINLIRWRLCRKRVLVVLDDVD------QLEQLQALAGNHDWFGFGSRIIITTRDEHVLKGHGVTNIYKV  183 (216)
Q Consensus       117 ~~~~~~~l~~~l~~~~~llvlDd~~------~~~~~~~l~~~~~~~~~~~~il~tsr~~~~~~~~~~~~~~~l  183 (216)
                      .+...-.+...+..++-+|+||+.-      +...+..++..+     +..||++||+.++...+ +++.+.+
T Consensus       905 GQkQRVaLArAL~~~P~LLLLDEPT~gLD~~s~~~L~~~L~~~-----g~tVIiISHD~e~v~~l-~DrVivL  971 (986)
T 2iw3_A          905 GQKVKLVLAAGTWQRPHLIVLDEPTNYLDRDSLGALSKALKEF-----EGGVIIITHSAEFTKNL-TEEVWAV  971 (986)
T ss_dssp             HHHHHHHHHHHHTTCCSEEEEECGGGTCCHHHHHHHHHHHHSC-----SSEEEEECSCHHHHTTT-CCEEECC
T ss_pred             HHHHHHHHHHHHHhCCCEEEEECCccCCCHHHHHHHHHHHHHh-----CCEEEEEECCHHHHHHh-CCEEEEE
Confidence            3444556888889999999999762      223344444433     35799999998887665 4555544

>3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A*

Probab=97.89  E-value=2e-05  Score=70.66  Aligned_cols=24  Identities=29%  Similarity=0.159  Sum_probs=21.5

Q ss_pred             CCeeEEEEEecCCCcHHHHHHHHH
Q 039455           47 DDVRFIGICGMGGIGKTTLAKVLY   70 (216)
Q Consensus        47 ~~~~~i~I~G~~GiGKTtL~~~~~   70 (216)
                      ..+.+++|+||+|+||||+++.++
T Consensus       660 ~~g~i~~ItGpNGsGKSTlLr~ia  683 (934)
T 3thx_A          660 DKQMFHIITGPNMGGKSTYIRQTG  683 (934)
T ss_dssp             TTBCEEEEECCTTSSHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHH
Confidence            346899999999999999999984

>2o8b_B DNA mismatch repair protein MSH6; DNA damage response, somatic hypermutat protein-DNA complex, DNA mispair, cancer; HET: DNA ADP; 2.75A {Homo sapiens} PDB: 2o8c_B* 2o8d_B* 2o8e_B* 2o8f_B*

Probab=97.87  E-value=1.7e-06  Score=78.26  Aligned_cols=21  Identities=24%  Similarity=0.200  Sum_probs=20.1

Q ss_pred             eeEEEEEecCCCcHHHHHHHH
Q 039455           49 VRFIGICGMGGIGKTTLAKVL   69 (216)
Q Consensus        49 ~~~i~I~G~~GiGKTtL~~~~   69 (216)
                      +.+++|+||+|+|||||++.+
T Consensus       789 g~i~~ItGpNgsGKSTlLr~i  809 (1022)
T 2o8b_B          789 AYCVLVTGPNMGGKSTLMRQA  809 (1022)
T ss_dssp             CCEEEEECCTTSSHHHHHHHH
T ss_pred             CcEEEEECCCCCChHHHHHHH
Confidence            589999999999999999999

>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A

Probab=97.86  E-value=0.00027  Score=55.89  Aligned_cols=36  Identities=19%  Similarity=0.175  Sum_probs=28.2

Q ss_pred             CeeEEEEEecCCCcHHHHHHHHHHHhcCCCCceEee
Q 039455           48 DVRFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFL   83 (216)
Q Consensus        48 ~~~~i~I~G~~GiGKTtL~~~~~~~~~~~~~~~~~~   83 (216)
                      .+.+++|+|++|+||||++..++..+......+.++
T Consensus       104 ~~~vI~ivG~~G~GKTT~~~~LA~~l~~~g~kVlli  139 (320)
T 1zu4_A          104 RLNIFMLVGVNGTGKTTSLAKMANYYAELGYKVLIA  139 (320)
T ss_dssp             SCEEEEEESSTTSSHHHHHHHHHHHHHHTTCCEEEE
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEE
Confidence            467999999999999999999998766543334443

>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A

Probab=97.86  E-value=1.6e-05  Score=63.91  Aligned_cols=48  Identities=23%  Similarity=0.127  Sum_probs=38.0

Q ss_pred             ccccchhHHHHHHHHHh-------------cCCCCeeEEEEEecCCCcHHHHHHHHHHHhc
Q 039455           27 GLVGIASRMEKMNGYLE-------------AGLDDVRFIGICGMGGIGKTTLAKVLYNTLK   74 (216)
Q Consensus        27 ~~vgR~~~~~~l~~~l~-------------~~~~~~~~i~I~G~~GiGKTtL~~~~~~~~~   74 (216)
                      .++|.+..++.+...+.             ........++++||+|+|||++|+.++..+.
T Consensus        16 ~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~vll~GppGtGKT~la~~ia~~~~   76 (363)
T 3hws_A           16 YVIGQEQAKKVLAVAVYNHYKRLRNGDTSNGVELGKSNILLIGPTGSGKTLLAETLARLLD   76 (363)
T ss_dssp             HCCSCHHHHHHHHHHHHHHHHHHHTTSCSSSCCCCCCCEEEECCTTSSHHHHHHHHHHHTT
T ss_pred             hccCHHHHHHHHHHHHHHHHhhhccccccccccCCCCeEEEECCCCCCHHHHHHHHHHHcC
Confidence            37999999998887762             1112346899999999999999999998763

>3dzd_A Transcriptional regulator (NTRC family); sigma43 activator, AAA+ ATPase, response regulator, transcriptional activator, ATP-binding; HET: ADP; 2.40A {Aquifex aeolicus} PDB: 1zit_A 2jrl_A

Probab=97.84  E-value=0.00014  Score=58.65  Aligned_cols=50  Identities=16%  Similarity=0.177  Sum_probs=37.8

Q ss_pred             ccccccchhHHHHHHHHHhcCCCCeeEEEEEecCCCcHHHHHHHHHHHhc
Q 039455           25 VDGLVGIASRMEKMNGYLEAGLDDVRFIGICGMGGIGKTTLAKVLYNTLK   74 (216)
Q Consensus        25 ~~~~vgR~~~~~~l~~~l~~~~~~~~~i~I~G~~GiGKTtL~~~~~~~~~   74 (216)
                      ...++|.+..+..+...+..-......+.|+|++|+||+++++.+.....
T Consensus       128 ~~~~ig~s~~~~~~~~~~~~~a~~~~~vli~GesGtGKe~lAr~ih~~s~  177 (368)
T 3dzd_A          128 EIEFVGEHPKILEIKRLIPKIAKSKAPVLITGESGTGKEIVARLIHRYSG  177 (368)
T ss_dssp             CCCCCCCSHHHHHHHHHHHHHHTSCSCEEEECCTTSSHHHHHHHHHHHHC
T ss_pred             cccccccchHHHHHHhhhhhhhccchhheEEeCCCchHHHHHHHHHHhcc
Confidence            35689999888888776553323345688999999999999998876543

>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*

Probab=97.83  E-value=2.1e-05  Score=58.95  Aligned_cols=113  Identities=13%  Similarity=-0.010  Sum_probs=57.6

Q ss_pred             CCeeEEEEEecCCCcHHHHHHHHHHHhcCCCCceEeeccccccccccCchHHHHHHHHHHHhh-ccccccchhhhHHHHH
Q 039455           47 DDVRFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLANVREVSVTRGLVPLQEQLLSEVLME-RNLIIWDVHKGINLIR  125 (216)
Q Consensus        47 ~~~~~i~I~G~~GiGKTtL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~~~~~~~~~~l~  125 (216)
                      ..+..++++|+.|+||||++..++.++..+...+..+.-..+.  . ...    .++..+... ..............+.
T Consensus        10 ~~G~i~litG~mGsGKTT~ll~~~~r~~~~g~kVli~~~~~d~--r-~~~----~i~srlG~~~~~~~~~~~~~i~~~i~   82 (223)
T 2b8t_A           10 KIGWIEFITGPMFAGKTAELIRRLHRLEYADVKYLVFKPKIDT--R-SIR----NIQSRTGTSLPSVEVESAPEILNYIM   82 (223)
T ss_dssp             -CCEEEEEECSTTSCHHHHHHHHHHHHHHTTCCEEEEEECCCG--G-GCS----SCCCCCCCSSCCEEESSTHHHHHHHH
T ss_pred             CCcEEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEEeccCc--h-HHH----HHHHhcCCCccccccCCHHHHHHHHH
Confidence            3468999999999999999999998776554334433211100  0 000    111111000 0011112223333344


Q ss_pred             HHhCC-ceEEEEEeCCCCH--HHHHHhhcCCCCCCCCcEEEEEeCCc
Q 039455          126 WRLCR-KRVLVVLDDVDQL--EQLQALAGNHDWFGFGSRIIITTRDE  169 (216)
Q Consensus       126 ~~l~~-~~~llvlDd~~~~--~~~~~l~~~~~~~~~~~~il~tsr~~  169 (216)
                      +.+.+ +.-+|++|++...  +.++.+. .+.  ..+..++++.+..
T Consensus        83 ~~~~~~~~dvViIDEaQ~l~~~~ve~l~-~L~--~~gi~Vil~Gl~~  126 (223)
T 2b8t_A           83 SNSFNDETKVIGIDEVQFFDDRICEVAN-ILA--ENGFVVIISGLDK  126 (223)
T ss_dssp             STTSCTTCCEEEECSGGGSCTHHHHHHH-HHH--HTTCEEEEECCSB
T ss_pred             HHhhCCCCCEEEEecCccCcHHHHHHHH-HHH--hCCCeEEEEeccc
Confidence            43333 3559999998633  3333222 111  1267899999954

>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25

Probab=97.83  E-value=1.1e-05  Score=58.68  Aligned_cols=25  Identities=32%  Similarity=0.434  Sum_probs=22.8

Q ss_pred             CeeEEEEEecCCCcHHHHHHHHHHH
Q 039455           48 DVRFIGICGMGGIGKTTLAKVLYNT   72 (216)
Q Consensus        48 ~~~~i~I~G~~GiGKTtL~~~~~~~   72 (216)
                      .+.+++|+|++|+|||||++.++..
T Consensus         8 ~g~~i~l~G~~GsGKSTl~~~La~~   32 (191)
T 1zp6_A            8 GGNILLLSGHPGSGKSTIAEALANL   32 (191)
T ss_dssp             TTEEEEEEECTTSCHHHHHHHHHTC
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHhc
Confidence            4579999999999999999999875

>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A

Probab=97.82  E-value=8.6e-05  Score=59.31  Aligned_cols=48  Identities=21%  Similarity=0.241  Sum_probs=34.3

Q ss_pred             HHHHHHhcCCCCeeEEEEEecCCCcHHHHHHHHHHHhcC------CCCceEeec
Q 039455           37 KMNGYLEAGLDDVRFIGICGMGGIGKTTLAKVLYNTLKD------QFEASSFLA   84 (216)
Q Consensus        37 ~l~~~l~~~~~~~~~i~I~G~~GiGKTtL~~~~~~~~~~------~~~~~~~~~   84 (216)
                      .|...|..+-+.+.++.|+|++|+|||+|+..++.....      .-..+.|++
T Consensus       110 ~LD~~LgGGl~~G~i~~I~G~~GsGKTtla~~la~~~~~~~~~gg~~~~vlyi~  163 (343)
T 1v5w_A          110 EFDKLLGGGIESMAITEAFGEFRTGKTQLSHTLCVTAQLPGAGGYPGGKIIFID  163 (343)
T ss_dssp             HHHHHTTSSBCSSEEEEEECCTTCTHHHHHHHHHHHTTSCBTTTBCCCEEEEEE
T ss_pred             hHHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCeEEEEE
Confidence            344445444456789999999999999999999986432      224566765

>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...

Probab=97.82  E-value=3.4e-05  Score=61.81  Aligned_cols=50  Identities=26%  Similarity=0.245  Sum_probs=36.8

Q ss_pred             HHHHHHHHh-cCCCCeeEEEEEecCCCcHHHHHHHHHHHhcCCCCceEeec
Q 039455           35 MEKMNGYLE-AGLDDVRFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLA   84 (216)
Q Consensus        35 ~~~l~~~l~-~~~~~~~~i~I~G~~GiGKTtL~~~~~~~~~~~~~~~~~~~   84 (216)
                      ...|...|. .+-+.+.++.|.|++|+|||||+..++......-..+.|++
T Consensus        46 ~~~LD~~Lg~GGl~~G~iv~I~G~pGsGKTtLal~la~~~~~~g~~vlyi~   96 (349)
T 2zr9_A           46 SISLDVALGIGGLPRGRVIEIYGPESSGKTTVALHAVANAQAAGGIAAFID   96 (349)
T ss_dssp             CHHHHHHTSSSSEETTSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred             CHHHHHHhccCCccCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEE
Confidence            344555555 44345689999999999999999999976655445667775

>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A

Probab=97.82  E-value=2.8e-05  Score=55.10  Aligned_cols=27  Identities=26%  Similarity=0.391  Sum_probs=24.7

Q ss_pred             CCeeEEEEEecCCCcHHHHHHHHHHHh
Q 039455           47 DDVRFIGICGMGGIGKTTLAKVLYNTL   73 (216)
Q Consensus        47 ~~~~~i~I~G~~GiGKTtL~~~~~~~~   73 (216)
                      ..+.+++|.|++|+|||||++.+++.+
T Consensus        31 ~~Ge~v~L~G~nGaGKTTLlr~l~g~l   57 (158)
T 1htw_A           31 EKAIMVYLNGDLGAGKTTLTRGMLQGI   57 (158)
T ss_dssp             SSCEEEEEECSTTSSHHHHHHHHHHHT
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHHHhC
Confidence            456899999999999999999999976

>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}

Probab=97.81  E-value=7.4e-05  Score=58.67  Aligned_cols=47  Identities=17%  Similarity=0.167  Sum_probs=34.0

Q ss_pred             HHHHHHh----cCCCCeeEEEEEecCCCcHHHHHHHHHHHhcCC--CCceEeec
Q 039455           37 KMNGYLE----AGLDDVRFIGICGMGGIGKTTLAKVLYNTLKDQ--FEASSFLA   84 (216)
Q Consensus        37 ~l~~~l~----~~~~~~~~i~I~G~~GiGKTtL~~~~~~~~~~~--~~~~~~~~   84 (216)
                      .|...|.    .+-+.+ ++.|.|++|+|||||+.+++......  -..+.|++
T Consensus        13 ~LD~~LGg~~~GGl~~G-iteI~G~pGsGKTtL~Lq~~~~~~~~g~g~~vlyId   65 (333)
T 3io5_A           13 MMNIALSGEITGGMQSG-LLILAGPSKSFKSNFGLTMVSSYMRQYPDAVCLFYD   65 (333)
T ss_dssp             HHHHHHHSSTTCCBCSE-EEEEEESSSSSHHHHHHHHHHHHHHHCTTCEEEEEE
T ss_pred             HHHHHhCCCCCCCCcCC-eEEEECCCCCCHHHHHHHHHHHHHhcCCCceEEEEe
Confidence            4445555    444445 79999999999999999998766543  34577776

>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}

Probab=97.81  E-value=1.3e-05  Score=59.01  Aligned_cols=26  Identities=31%  Similarity=0.473  Sum_probs=23.3

Q ss_pred             CeeEEEEEecCCCcHHHHHHHHHHHh
Q 039455           48 DVRFIGICGMGGIGKTTLAKVLYNTL   73 (216)
Q Consensus        48 ~~~~i~I~G~~GiGKTtL~~~~~~~~   73 (216)
                      .+.+++|+||+|+|||||++.+++..
T Consensus         6 ~g~ii~l~Gp~GsGKSTl~~~L~~~~   31 (205)
T 3tr0_A            6 KANLFIISAPSGAGKTSLVRALVKAL   31 (205)
T ss_dssp             CCCEEEEECCTTSCHHHHHHHHHHHS
T ss_pred             CCcEEEEECcCCCCHHHHHHHHHhhC
Confidence            35799999999999999999999864

>3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B*

Probab=97.81  E-value=6.3e-06  Score=73.61  Aligned_cols=25  Identities=28%  Similarity=0.222  Sum_probs=22.2

Q ss_pred             CCeeEEEEEecCCCcHHHHHHHHHH
Q 039455           47 DDVRFIGICGMGGIGKTTLAKVLYN   71 (216)
Q Consensus        47 ~~~~~i~I~G~~GiGKTtL~~~~~~   71 (216)
                      +.+.+++|+||+|+|||||++.++.
T Consensus       671 ~~g~i~~ItGPNGaGKSTlLr~i~~  695 (918)
T 3thx_B          671 DSERVMIITGPNMGGKSSYIKQVAL  695 (918)
T ss_dssp             TSCCEEEEESCCCHHHHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCchHHHHHHHHH
Confidence            3468999999999999999999874

>4aby_A DNA repair protein RECN; hydrolase, double strand break repair, ATPase, nucleotide binding domain; HET: DNA; 3.00A {Deinococcus radiodurans}

Probab=97.81  E-value=4.2e-05  Score=62.53  Aligned_cols=75  Identities=19%  Similarity=0.131  Sum_probs=44.8

Q ss_pred             HHHHHhCCce--EEEEEeCCCCH------HHHHHhhcCCCCCCCCcEEEEEeCCchhhhccCCcceEEe-----------
Q 039455          123 LIRWRLCRKR--VLVVLDDVDQL------EQLQALAGNHDWFGFGSRIIITTRDEHVLKGHGVTNIYKV-----------  183 (216)
Q Consensus       123 ~l~~~l~~~~--~llvlDd~~~~------~~~~~l~~~~~~~~~~~~il~tsr~~~~~~~~~~~~~~~l-----------  183 (216)
                      .+...+..++  -+|+|||+.+.      ..+..++..+.   .+..||++||+.+++..  ++..+.+           
T Consensus       305 ~lA~~l~~~~~~~~LlLDEpt~~LD~~~~~~l~~~L~~l~---~~~~vi~itH~~~~~~~--~d~i~~l~k~~~~G~~~~  379 (415)
T 4aby_A          305 MLAVSTVLGADTPSVVFDEVDAGIGGAAAIAVAEQLSRLA---DTRQVLVVTHLAQIAAR--AHHHYKVEKQVEDGRTVS  379 (415)
T ss_dssp             HHHHHHHHCCSSSEEEESSTTTTCCHHHHHHHHHHHHHHT---TTSEEEEECSCHHHHTT--CSEEEEEEEEEETTEEEE
T ss_pred             HHHHHHHhCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHh---CCCEEEEEeCcHHHHhh--cCeEEEEEEeccCCceEE
Confidence            3555555566  89999998532      33444444433   37889999999887654  3444443           


Q ss_pred             --cCCChHHHHHHHhhhhcCC
Q 039455          184 --RGLDYVEALQLFHLKVSKG  202 (216)
Q Consensus       184 --~~l~~~~~~~ll~~~~~~~  202 (216)
                        ..++.++..+=+.+...+.
T Consensus       380 ~~~~l~~~~~~~ei~~~~~g~  400 (415)
T 4aby_A          380 HVRLLTGDERLEEIARMLSGN  400 (415)
T ss_dssp             EEEECCSHHHHHHHHHHHHSS
T ss_pred             EEEECCchhhHHHHHHHhcCC
Confidence              4466655554444454443

>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1

Probab=97.78  E-value=1.5e-05  Score=57.67  Aligned_cols=27  Identities=15%  Similarity=0.297  Sum_probs=23.7

Q ss_pred             CeeEEEEEecCCCcHHHHHHHHHHHhc
Q 039455           48 DVRFIGICGMGGIGKTTLAKVLYNTLK   74 (216)
Q Consensus        48 ~~~~i~I~G~~GiGKTtL~~~~~~~~~   74 (216)
                      .+..++|+||+|+|||||++.+.....
T Consensus         4 ~g~~i~i~GpsGsGKSTL~~~L~~~~~   30 (180)
T 1kgd_A            4 MRKTLVLLGAHGVGRRHIKNTLITKHP   30 (180)
T ss_dssp             CCCEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHhhCC
Confidence            357999999999999999999998653

>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*

Probab=97.77  E-value=2.1e-05  Score=57.86  Aligned_cols=28  Identities=36%  Similarity=0.421  Sum_probs=25.1

Q ss_pred             CCeeEEEEEecCCCcHHHHHHHHHHHhc
Q 039455           47 DDVRFIGICGMGGIGKTTLAKVLYNTLK   74 (216)
Q Consensus        47 ~~~~~i~I~G~~GiGKTtL~~~~~~~~~   74 (216)
                      ..+.+++|+|++|+||||+++.++..+.
T Consensus        23 ~~g~~i~l~G~sGsGKSTl~~~La~~l~   50 (200)
T 3uie_A           23 QKGCVIWVTGLSGSGKSTLACALNQMLY   50 (200)
T ss_dssp             SCCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence            3468999999999999999999998775

>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11

Probab=97.77  E-value=4.5e-05  Score=61.12  Aligned_cols=37  Identities=27%  Similarity=0.409  Sum_probs=29.3

Q ss_pred             HHHHHhcCCCCeeEEEEEecCCCcHHHHHHHHHHHhc
Q 039455           38 MNGYLEAGLDDVRFIGICGMGGIGKTTLAKVLYNTLK   74 (216)
Q Consensus        38 l~~~l~~~~~~~~~i~I~G~~GiGKTtL~~~~~~~~~   74 (216)
                      |...|..+-+.+.++.|+|++|+|||||+..++..+.
T Consensus       120 LD~lL~ggi~~G~i~~I~G~~GsGKTTL~~~l~~~~~  156 (349)
T 1pzn_A          120 LDKLLGGGIETQAITEVFGEFGSGKTQLAHTLAVMVQ  156 (349)
T ss_dssp             HHHHHTSSEESSEEEEEEESTTSSHHHHHHHHHHHTT
T ss_pred             HHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHhc
Confidence            4444544445678999999999999999999998763

>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*

Probab=97.77  E-value=1.7e-05  Score=56.99  Aligned_cols=25  Identities=28%  Similarity=0.432  Sum_probs=22.8

Q ss_pred             eEEEEEecCCCcHHHHHHHHHHHhc
Q 039455           50 RFIGICGMGGIGKTTLAKVLYNTLK   74 (216)
Q Consensus        50 ~~i~I~G~~GiGKTtL~~~~~~~~~   74 (216)
                      ..|+|+|++|+||||+++.++.++.
T Consensus         4 ~~i~l~G~~GsGKST~a~~La~~l~   28 (178)
T 1qhx_A            4 RMIILNGGSSAGKSGIVRCLQSVLP   28 (178)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHHSS
T ss_pred             eEEEEECCCCCCHHHHHHHHHHhcC
Confidence            6899999999999999999998764

>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*

Probab=97.76  E-value=9.3e-05  Score=58.61  Aligned_cols=47  Identities=21%  Similarity=0.354  Sum_probs=33.2

Q ss_pred             HHHHHhcCCCCeeEEEEEecCCCcHHHHHHHHHHHhcCC------CCceEeec
Q 039455           38 MNGYLEAGLDDVRFIGICGMGGIGKTTLAKVLYNTLKDQ------FEASSFLA   84 (216)
Q Consensus        38 l~~~l~~~~~~~~~i~I~G~~GiGKTtL~~~~~~~~~~~------~~~~~~~~   84 (216)
                      |...|..+-+.+.++.|+|++|+|||+|+..++......      -..+.|++
T Consensus        96 LD~~L~GGl~~G~i~~i~G~~GsGKT~la~~la~~~~~~~~~gg~~~~vlyi~  148 (324)
T 2z43_A           96 LDGLLAGGIETRTMTEFFGEFGSGKTQLCHQLSVNVQLPPEKGGLSGKAVYID  148 (324)
T ss_dssp             HHHHTTTSEETTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEE
T ss_pred             HHHhcCCCCCCCcEEEEECCCCCCHhHHHHHHHHHHhcccccCCCCCeEEEEE
Confidence            444443333456799999999999999999999865332      24566765

>1ewq_A DNA mismatch repair protein MUTS; multiple domains of protein, mostly mixed alpha-beta structures, one domain is entirely helical; HET: DNA; 2.20A {Thermus aquaticus} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1nne_A* 1fw6_A* 1ewr_A*

Probab=97.76  E-value=6.6e-06  Score=72.26  Aligned_cols=24  Identities=21%  Similarity=0.163  Sum_probs=22.1

Q ss_pred             eeEEEEEecCCCcHHHHHHHHHHH
Q 039455           49 VRFIGICGMGGIGKTTLAKVLYNT   72 (216)
Q Consensus        49 ~~~i~I~G~~GiGKTtL~~~~~~~   72 (216)
                      +.+++|+||+|+|||||++.++.-
T Consensus       576 g~i~~I~GpNGsGKSTlLr~iagl  599 (765)
T 1ewq_A          576 HELVLITGPNMAGKSTFLRQTALI  599 (765)
T ss_dssp             SCEEEEESCSSSSHHHHHHHHHHH
T ss_pred             CcEEEEECCCCCChHHHHHHHHhh
Confidence            579999999999999999999874

>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*

Probab=97.76  E-value=2.2e-05  Score=58.06  Aligned_cols=27  Identities=48%  Similarity=0.516  Sum_probs=24.1

Q ss_pred             CeeEEEEEecCCCcHHHHHHHHHHHhc
Q 039455           48 DVRFIGICGMGGIGKTTLAKVLYNTLK   74 (216)
Q Consensus        48 ~~~~i~I~G~~GiGKTtL~~~~~~~~~   74 (216)
                      .+.+++|+|++|+|||||++.+++.+.
T Consensus         5 ~~~~i~i~G~~GsGKSTl~~~l~~~~~   31 (211)
T 3asz_A            5 KPFVIGIAGGTASGKTTLAQALARTLG   31 (211)
T ss_dssp             CCEEEEEEESTTSSHHHHHHHHHHHHG
T ss_pred             CcEEEEEECCCCCCHHHHHHHHHHHhC
Confidence            457999999999999999999998764

>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A

Probab=97.75  E-value=1.7e-05  Score=58.61  Aligned_cols=27  Identities=22%  Similarity=0.412  Sum_probs=23.7

Q ss_pred             CCeeEEEEEecCCCcHHHHHHHHHHHh
Q 039455           47 DDVRFIGICGMGGIGKTTLAKVLYNTL   73 (216)
Q Consensus        47 ~~~~~i~I~G~~GiGKTtL~~~~~~~~   73 (216)
                      ..+.+++|.||+|+|||||++.+++.+
T Consensus        18 ~~Gei~~l~GpnGsGKSTLl~~l~gl~   44 (207)
T 1znw_A           18 AVGRVVVLSGPSAVGKSTVVRCLRERI   44 (207)
T ss_dssp             -CCCEEEEECSTTSSHHHHHHHHHHHS
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHHhhC
Confidence            345799999999999999999999865

>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}

Probab=97.74  E-value=7.5e-05  Score=69.59  Aligned_cols=28  Identities=21%  Similarity=0.430  Sum_probs=24.0

Q ss_pred             CCeeEEEEEecCCCcHHHHHHHHHHHhc
Q 039455           47 DDVRFIGICGMGGIGKTTLAKVLYNTLK   74 (216)
Q Consensus        47 ~~~~~i~I~G~~GiGKTtL~~~~~~~~~   74 (216)
                      +.+..++|+|++|+|||||++.+.+.+.
T Consensus       442 ~~G~~vaivG~sGsGKSTll~ll~~~~~  469 (1321)
T 4f4c_A          442 NAGQTVALVGSSGCGKSTIISLLLRYYD  469 (1321)
T ss_dssp             CTTCEEEEEECSSSCHHHHHHHHTTSSC
T ss_pred             cCCcEEEEEecCCCcHHHHHHHhccccc
Confidence            3467999999999999999999987543

>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}

Probab=97.74  E-value=2e-05  Score=57.92  Aligned_cols=26  Identities=31%  Similarity=0.475  Sum_probs=23.7

Q ss_pred             CeeEEEEEecCCCcHHHHHHHHHHHh
Q 039455           48 DVRFIGICGMGGIGKTTLAKVLYNTL   73 (216)
Q Consensus        48 ~~~~i~I~G~~GiGKTtL~~~~~~~~   73 (216)
                      .+..++|+|++|+|||||++.+++.+
T Consensus        28 ~g~~i~l~G~~GsGKSTl~~~L~~~~   53 (200)
T 4eun_A           28 PTRHVVVMGVSGSGKTTIAHGVADET   53 (200)
T ss_dssp             CCCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHhh
Confidence            45799999999999999999999876

>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*

Probab=97.74  E-value=4.5e-05  Score=60.50  Aligned_cols=36  Identities=31%  Similarity=0.269  Sum_probs=28.3

Q ss_pred             CCeeEEEEEecCCCcHHHHHHHHHHHhcCCCCceEe
Q 039455           47 DDVRFIGICGMGGIGKTTLAKVLYNTLKDQFEASSF   82 (216)
Q Consensus        47 ~~~~~i~I~G~~GiGKTtL~~~~~~~~~~~~~~~~~   82 (216)
                      ..+.+++|+|++|+||||+++.+++.+......+.+
T Consensus       127 ~~g~vi~lvG~nGaGKTTll~~Lag~l~~~~g~V~l  162 (328)
T 3e70_C          127 EKPYVIMFVGFNGSGKTTTIAKLANWLKNHGFSVVI  162 (328)
T ss_dssp             CSSEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEE
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHHHhcCCEEEE
Confidence            357899999999999999999999876654333333

>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}

Probab=97.73  E-value=1.9e-05  Score=58.50  Aligned_cols=27  Identities=22%  Similarity=0.426  Sum_probs=24.0

Q ss_pred             CeeEEEEEecCCCcHHHHHHHHHHHhc
Q 039455           48 DVRFIGICGMGGIGKTTLAKVLYNTLK   74 (216)
Q Consensus        48 ~~~~i~I~G~~GiGKTtL~~~~~~~~~   74 (216)
                      .+.+++|+||+|+|||||++.++..+.
T Consensus         7 ~g~~i~l~GpsGsGKsTl~~~L~~~~~   33 (208)
T 3tau_A            7 RGLLIVLSGPSGVGKGTVREAVFKDPE   33 (208)
T ss_dssp             CCCEEEEECCTTSCHHHHHHHHHHSTT
T ss_pred             CCcEEEEECcCCCCHHHHHHHHHhhCC
Confidence            467999999999999999999998754

>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*

Probab=97.72  E-value=3e-05  Score=55.55  Aligned_cols=27  Identities=26%  Similarity=0.434  Sum_probs=23.8

Q ss_pred             CCeeEEEEEecCCCcHHHHHHHHHHHh
Q 039455           47 DDVRFIGICGMGGIGKTTLAKVLYNTL   73 (216)
Q Consensus        47 ~~~~~i~I~G~~GiGKTtL~~~~~~~~   73 (216)
                      ..+..++|+|++|+||||+++.++..+
T Consensus         6 ~~g~~i~l~G~~GsGKSTl~~~l~~~~   32 (175)
T 1knq_A            6 HDHHIYVLMGVSGSGKSAVASEVAHQL   32 (175)
T ss_dssp             TTSEEEEEECSTTSCHHHHHHHHHHHH
T ss_pred             CCCcEEEEEcCCCCCHHHHHHHHHHhh
Confidence            345799999999999999999998865

>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*

Probab=97.72  E-value=2e-05  Score=58.91  Aligned_cols=28  Identities=21%  Similarity=0.288  Sum_probs=24.4

Q ss_pred             CCeeEEEEEecCCCcHHHHHHHHHHHhc
Q 039455           47 DDVRFIGICGMGGIGKTTLAKVLYNTLK   74 (216)
Q Consensus        47 ~~~~~i~I~G~~GiGKTtL~~~~~~~~~   74 (216)
                      +.+..++|+||+|+|||||++.+++...
T Consensus        14 ~~G~ii~l~GpsGsGKSTLlk~L~g~~~   41 (219)
T 1s96_A           14 AQGTLYIVSAPSGAGKSSLIQALLKTQP   41 (219)
T ss_dssp             -CCCEEEEECCTTSCHHHHHHHHHHHSC
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHhccCC
Confidence            4568999999999999999999998764

>1ny5_A Transcriptional regulator (NTRC family); AAA+ ATPase, sigma54 activator, bacterial transcription, DIM transcription; HET: ADP; 2.40A {Aquifex aeolicus} SCOP: c.23.1.1 c.37.1.20 PDB: 1ny6_A* 3m0e_A* 1zy2_A*

Probab=97.71  E-value=0.00021  Score=58.02  Aligned_cols=48  Identities=17%  Similarity=0.167  Sum_probs=37.2

Q ss_pred             cccccchhHHHHHHHHHhcCCCCeeEEEEEecCCCcHHHHHHHHHHHh
Q 039455           26 DGLVGIASRMEKMNGYLEAGLDDVRFIGICGMGGIGKTTLAKVLYNTL   73 (216)
Q Consensus        26 ~~~vgR~~~~~~l~~~l~~~~~~~~~i~I~G~~GiGKTtL~~~~~~~~   73 (216)
                      ..++|.+..++.+.+.+..-......+.|+|++|+|||++|+.+....
T Consensus       137 ~~~ig~s~~m~~l~~~i~~~a~~~~~vli~Ge~GtGK~~lAr~ih~~s  184 (387)
T 1ny5_A          137 EEYVFESPKMKEILEKIKKISCAECPVLITGESGVGKEVVARLIHKLS  184 (387)
T ss_dssp             CCCCCCSHHHHHHHHHHHHHTTCCSCEEEECSTTSSHHHHHHHHHHHS
T ss_pred             hhhhhccHHhhHHHHHHHHhcCCCCCeEEecCCCcCHHHHHHHHHHhc
Confidence            357899989998888766433334567999999999999999887653

>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G

Probab=97.71  E-value=2.8e-05  Score=61.94  Aligned_cols=51  Identities=18%  Similarity=0.107  Sum_probs=37.1

Q ss_pred             CCcccccccchhHHHHHHHHHhcCCCCeeEEEEEecCCCcHHHHHHHHHHHhc
Q 039455           22 PSAVDGLVGIASRMEKMNGYLEAGLDDVRFIGICGMGGIGKTTLAKVLYNTLK   74 (216)
Q Consensus        22 ~~~~~~~vgR~~~~~~l~~~l~~~~~~~~~i~I~G~~GiGKTtL~~~~~~~~~   74 (216)
                      +..-..++|.+...+.+.......  ....+.|+|++|+|||+||+.++....
T Consensus        20 ~~~f~~i~G~~~~~~~l~~~~~~~--~~~~vLl~G~~GtGKT~la~~la~~~~   70 (350)
T 1g8p_A           20 VFPFSAIVGQEDMKLALLLTAVDP--GIGGVLVFGDRGTGKSTAVRALAALLP   70 (350)
T ss_dssp             CCCGGGSCSCHHHHHHHHHHHHCG--GGCCEEEECCGGGCTTHHHHHHHHHSC
T ss_pred             CCCchhccChHHHHHHHHHHhhCC--CCceEEEECCCCccHHHHHHHHHHhCc
Confidence            344567999998666654443322  224599999999999999999998664

>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}

Probab=97.71  E-value=0.0003  Score=52.41  Aligned_cols=28  Identities=29%  Similarity=0.348  Sum_probs=24.7

Q ss_pred             CCCeeEEEEEecCCCcHHHHHHHHHHHh
Q 039455           46 LDDVRFIGICGMGGIGKTTLAKVLYNTL   73 (216)
Q Consensus        46 ~~~~~~i~I~G~~GiGKTtL~~~~~~~~   73 (216)
                      ..+.++|+|.||+|+||||.++.++.++
T Consensus        26 ~~k~kiI~llGpPGsGKgTqa~~L~~~~   53 (217)
T 3umf_A           26 LAKAKVIFVLGGPGSGKGTQCEKLVQKF   53 (217)
T ss_dssp             TTSCEEEEEECCTTCCHHHHHHHHHHHH
T ss_pred             ccCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence            3467899999999999999999999875

>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2

Probab=97.70  E-value=1.8e-05  Score=56.54  Aligned_cols=25  Identities=36%  Similarity=0.472  Sum_probs=22.5

Q ss_pred             eEEEEEecCCCcHHHHHHHHHHHhc
Q 039455           50 RFIGICGMGGIGKTTLAKVLYNTLK   74 (216)
Q Consensus        50 ~~i~I~G~~GiGKTtL~~~~~~~~~   74 (216)
                      ..|+|+|++|+||||+++.++..+.
T Consensus         5 ~~i~l~G~~GsGKSTl~~~La~~l~   29 (173)
T 1kag_A            5 RNIFLVGPMGAGKSTIGRQLAQQLN   29 (173)
T ss_dssp             CCEEEECCTTSCHHHHHHHHHHHTT
T ss_pred             CeEEEECCCCCCHHHHHHHHHHHhC
Confidence            5799999999999999999998753

>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*

Probab=97.69  E-value=0.00013  Score=57.05  Aligned_cols=36  Identities=25%  Similarity=0.323  Sum_probs=28.0

Q ss_pred             CeeEEEEEecCCCcHHHHHHHHHHHhcC-CCCceEee
Q 039455           48 DVRFIGICGMGGIGKTTLAKVLYNTLKD-QFEASSFL   83 (216)
Q Consensus        48 ~~~~i~I~G~~GiGKTtL~~~~~~~~~~-~~~~~~~~   83 (216)
                      .+.+++++|++|+||||++..++..+.. ....+.++
T Consensus       104 ~g~vi~lvG~~GsGKTTl~~~LA~~l~~~~G~~V~lv  140 (296)
T 2px0_A          104 HSKYIVLFGSTGAGKTTTLAKLAAISMLEKHKKIAFI  140 (296)
T ss_dssp             CSSEEEEEESTTSSHHHHHHHHHHHHHHTTCCCEEEE
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCEEEEE
Confidence            4679999999999999999999987763 32234444

>1wb9_A DNA mismatch repair protein MUTS; DNA-binding, ATP-binding, DNA binding, DNA repair, mismatch recognition; HET: DNA ADP; 2.10A {Escherichia coli} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1wbb_A* 1e3m_A* 1oh5_A* 1oh6_A* 1oh7_A* 1oh8_A* 1w7a_A* 2wtu_A* 1wbd_A* 1ng9_A* 3k0s_A*

Probab=97.69  E-value=1e-05  Score=71.41  Aligned_cols=26  Identities=23%  Similarity=0.132  Sum_probs=23.1

Q ss_pred             CCeeEEEEEecCCCcHHHHHHHHHHH
Q 039455           47 DDVRFIGICGMGGIGKTTLAKVLYNT   72 (216)
Q Consensus        47 ~~~~~i~I~G~~GiGKTtL~~~~~~~   72 (216)
                      +.+.+++|+||+|+|||||++.++.-
T Consensus       605 ~~g~i~~ItGpNGsGKSTlLr~iagl  630 (800)
T 1wb9_A          605 PQRRMLIITGPNMGGKSTYMRQTALI  630 (800)
T ss_dssp             SSSCEEEEECCTTSSHHHHHHHHHHH
T ss_pred             CCCcEEEEECCCCCChHHHHHHHHHH
Confidence            45679999999999999999999873

>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1

Probab=97.69  E-value=1.9e-05  Score=58.04  Aligned_cols=26  Identities=35%  Similarity=0.491  Sum_probs=22.6

Q ss_pred             eeEEEEEecCCCcHHHHHHHHHHHhc
Q 039455           49 VRFIGICGMGGIGKTTLAKVLYNTLK   74 (216)
Q Consensus        49 ~~~i~I~G~~GiGKTtL~~~~~~~~~   74 (216)
                      +..++|+||+|+|||||++.+...+.
T Consensus         4 g~~i~lvGpsGaGKSTLl~~L~~~~~   29 (198)
T 1lvg_A            4 PRPVVLSGPSGAGKSTLLKKLFQEHS   29 (198)
T ss_dssp             -CCEEEECCTTSSHHHHHHHHHHHHT
T ss_pred             CCEEEEECCCCCCHHHHHHHHHhhCc
Confidence            46899999999999999999988653

>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6

Probab=97.68  E-value=6.9e-05  Score=58.43  Aligned_cols=30  Identities=30%  Similarity=0.333  Sum_probs=25.7

Q ss_pred             CCCeeEEEEEecCCCcHHHHHHHHHHHhcC
Q 039455           46 LDDVRFIGICGMGGIGKTTLAKVLYNTLKD   75 (216)
Q Consensus        46 ~~~~~~i~I~G~~GiGKTtL~~~~~~~~~~   75 (216)
                      ...+.+|+|.|++|+|||||++.+...+..
T Consensus        28 ~~~~~ii~I~G~sGsGKSTla~~L~~~l~~   57 (290)
T 1odf_A           28 NKCPLFIFFSGPQGSGKSFTSIQIYNHLME   57 (290)
T ss_dssp             CCSCEEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred             CCCCeEEEEECCCCCCHHHHHHHHHHHhhh
Confidence            455789999999999999999999886653

>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A

Probab=97.68  E-value=1.7e-05  Score=57.69  Aligned_cols=26  Identities=46%  Similarity=0.606  Sum_probs=22.2

Q ss_pred             eEEEEEecCCCcHHHHHHHHHHHhcC
Q 039455           50 RFIGICGMGGIGKTTLAKVLYNTLKD   75 (216)
Q Consensus        50 ~~i~I~G~~GiGKTtL~~~~~~~~~~   75 (216)
                      +.|+|+||+|+|||||++.+..+...
T Consensus         2 RpIVi~GPSG~GK~Tl~~~L~~~~~~   27 (186)
T 1ex7_A            2 RPIVISGPSGTGKSTLLKKLFAEYPD   27 (186)
T ss_dssp             CCEEEECCTTSSHHHHHHHHHHHCTT
T ss_pred             CEEEEECCCCCCHHHHHHHHHHhCCC
Confidence            46899999999999999999876533

>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*

Probab=97.67  E-value=4.5e-05  Score=59.89  Aligned_cols=29  Identities=28%  Similarity=0.383  Sum_probs=25.5

Q ss_pred             CeeEEEEEecCCCcHHHHHHHHHHHhcCC
Q 039455           48 DVRFIGICGMGGIGKTTLAKVLYNTLKDQ   76 (216)
Q Consensus        48 ~~~~i~I~G~~GiGKTtL~~~~~~~~~~~   76 (216)
                      .+.+++|+|++|+||||+++.++..+...
T Consensus       101 ~g~vi~lvG~nGsGKTTll~~Lagll~~~  129 (304)
T 1rj9_A          101 KGRVVLVVGVNGVGKTTTIAKLGRYYQNL  129 (304)
T ss_dssp             SSSEEEEECSTTSSHHHHHHHHHHHHHTT
T ss_pred             CCeEEEEECCCCCcHHHHHHHHHHHHHhc
Confidence            46799999999999999999999876654

>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}

Probab=97.67  E-value=4.2e-05  Score=60.01  Aligned_cols=29  Identities=38%  Similarity=0.415  Sum_probs=25.4

Q ss_pred             CeeEEEEEecCCCcHHHHHHHHHHHhcCC
Q 039455           48 DVRFIGICGMGGIGKTTLAKVLYNTLKDQ   76 (216)
Q Consensus        48 ~~~~i~I~G~~GiGKTtL~~~~~~~~~~~   76 (216)
                      .+.+++|+|++|+||||+++.+++.+...
T Consensus        99 ~g~vi~lvG~nGsGKTTll~~Lag~l~~~  127 (302)
T 3b9q_A           99 KPAVIMIVGVNGGGKTTSLGKLAHRLKNE  127 (302)
T ss_dssp             SCEEEEEECCTTSCHHHHHHHHHHHHHHT
T ss_pred             CCcEEEEEcCCCCCHHHHHHHHHHHHHHc
Confidence            46799999999999999999999876543

>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*

Probab=97.67  E-value=1.2e-05  Score=68.03  Aligned_cols=37  Identities=22%  Similarity=0.212  Sum_probs=26.1

Q ss_pred             CCeeEEEEEecCCCcHHHHHHHH--HHHhcCCCCceEeec
Q 039455           47 DDVRFIGICGMGGIGKTTLAKVL--YNTLKDQFEASSFLA   84 (216)
Q Consensus        47 ~~~~~i~I~G~~GiGKTtL~~~~--~~~~~~~~~~~~~~~   84 (216)
                      ..+.+++|.|++|+|||||++.+  .+.... ....+++.
T Consensus        37 ~~Ge~~~l~G~nGsGKSTL~~~~ll~Gl~~~-~~g~i~v~   75 (525)
T 1tf7_A           37 PIGRSTLVSGTSGTGKTLFSIQFLYNGIIEF-DEPGVFVT   75 (525)
T ss_dssp             ETTSEEEEEESTTSSHHHHHHHHHHHHHHHH-CCCEEEEE
T ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHHHHHHhC-CCCEEEEE
Confidence            35689999999999999999995  444331 23445543

>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}

Probab=97.67  E-value=2.9e-05  Score=56.97  Aligned_cols=26  Identities=38%  Similarity=0.420  Sum_probs=23.5

Q ss_pred             CeeEEEEEecCCCcHHHHHHHHHHHh
Q 039455           48 DVRFIGICGMGGIGKTTLAKVLYNTL   73 (216)
Q Consensus        48 ~~~~i~I~G~~GiGKTtL~~~~~~~~   73 (216)
                      ....|+|+|++|+||||+++.++..+
T Consensus        24 ~~~~i~l~G~~GsGKsTl~~~La~~l   49 (199)
T 3vaa_A           24 AMVRIFLTGYMGAGKTTLGKAFARKL   49 (199)
T ss_dssp             CCCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred             CCCEEEEEcCCCCCHHHHHHHHHHHc
Confidence            34699999999999999999999876

>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*

Probab=97.66  E-value=3.1e-05  Score=55.15  Aligned_cols=25  Identities=32%  Similarity=0.220  Sum_probs=22.2

Q ss_pred             eEEEEEecCCCcHHHHHHHHHHHhc
Q 039455           50 RFIGICGMGGIGKTTLAKVLYNTLK   74 (216)
Q Consensus        50 ~~i~I~G~~GiGKTtL~~~~~~~~~   74 (216)
                      ..|+|.|++|+||||+++.++..+.
T Consensus         2 ~~i~l~G~~GsGKsT~~~~L~~~l~   26 (173)
T 3kb2_A            2 TLIILEGPDCCFKSTVAAKLSKELK   26 (173)
T ss_dssp             CEEEEECSSSSSHHHHHHHHHHHHC
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHhC
Confidence            3689999999999999999998764

>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*

Probab=97.65  E-value=3.7e-05  Score=58.41  Aligned_cols=27  Identities=26%  Similarity=0.372  Sum_probs=24.0

Q ss_pred             CCeeEEEEEecCCCcHHHHHHHHHHHh
Q 039455           47 DDVRFIGICGMGGIGKTTLAKVLYNTL   73 (216)
Q Consensus        47 ~~~~~i~I~G~~GiGKTtL~~~~~~~~   73 (216)
                      ..+.+++|.|++|+|||||++.+++.+
T Consensus        23 ~~g~iigI~G~~GsGKSTl~k~L~~~l   49 (245)
T 2jeo_A           23 MRPFLIGVSGGTASGKSTVCEKIMELL   49 (245)
T ss_dssp             CCSEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHHHh
Confidence            456899999999999999999998865

>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25

Probab=97.64  E-value=3.5e-05  Score=55.99  Aligned_cols=24  Identities=33%  Similarity=0.437  Sum_probs=21.4

Q ss_pred             eeEEEEEecCCCcHHHHHHHHHHH
Q 039455           49 VRFIGICGMGGIGKTTLAKVLYNT   72 (216)
Q Consensus        49 ~~~i~I~G~~GiGKTtL~~~~~~~   72 (216)
                      +.+++|+|++|+|||||++.++..
T Consensus         2 g~ii~l~G~~GaGKSTl~~~L~~~   25 (189)
T 2bdt_A            2 KKLYIITGPAGVGKSTTCKRLAAQ   25 (189)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CeEEEEECCCCCcHHHHHHHHhcc
Confidence            368999999999999999999863

>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}

Probab=97.64  E-value=2.4e-05  Score=58.38  Aligned_cols=27  Identities=41%  Similarity=0.701  Sum_probs=23.6

Q ss_pred             CCeeEEEEEecCCCcHHHHHHHHHHHh
Q 039455           47 DDVRFIGICGMGGIGKTTLAKVLYNTL   73 (216)
Q Consensus        47 ~~~~~i~I~G~~GiGKTtL~~~~~~~~   73 (216)
                      ..+..++|+||+|+|||||++.+++.+
T Consensus        21 ~~G~~~~lvGpsGsGKSTLl~~L~g~~   47 (218)
T 1z6g_A           21 NNIYPLVICGPSGVGKGTLIKKLLNEF   47 (218)
T ss_dssp             -CCCCEEEECSTTSSHHHHHHHHHHHS
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHHhhC
Confidence            345799999999999999999999865

>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}

Probab=97.63  E-value=3.5e-05  Score=56.60  Aligned_cols=26  Identities=27%  Similarity=0.450  Sum_probs=23.3

Q ss_pred             CeeEEEEEecCCCcHHHHHHHHHHHh
Q 039455           48 DVRFIGICGMGGIGKTTLAKVLYNTL   73 (216)
Q Consensus        48 ~~~~i~I~G~~GiGKTtL~~~~~~~~   73 (216)
                      .+..++|+|++|+||||+++.++...
T Consensus         5 ~g~~i~l~G~~GsGKSTl~~~L~~~~   30 (207)
T 2j41_A            5 KGLLIVLSGPSGVGKGTVRKRIFEDP   30 (207)
T ss_dssp             CCCEEEEECSTTSCHHHHHHHHHHCT
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHHhh
Confidence            35799999999999999999998865

>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}

Probab=97.61  E-value=8.8e-05  Score=64.54  Aligned_cols=62  Identities=18%  Similarity=0.260  Sum_probs=39.5

Q ss_pred             hhhHHHHHHHhCCc---eEEEEEeCCCC------HHHHHHhhcCCCCCCCCcEEEEEeCCchhhhccCCcceEEe
Q 039455          118 HKGINLIRWRLCRK---RVLVVLDDVDQ------LEQLQALAGNHDWFGFGSRIIITTRDEHVLKGHGVTNIYKV  183 (216)
Q Consensus       118 ~~~~~~l~~~l~~~---~~llvlDd~~~------~~~~~~l~~~~~~~~~~~~il~tsr~~~~~~~~~~~~~~~l  183 (216)
                      +...-.+.+.+..+   +-+|++|+.-+      ...+..++..+.  ..+..||++||+.+.+..  ++..+.+
T Consensus       548 ~~qrv~iAraL~~~p~~p~llllDEPt~~LD~~~~~~i~~~l~~l~--~~g~tvi~vtHd~~~~~~--~d~i~~l  618 (670)
T 3ux8_A          548 EAQRVKLAAELHRRSNGRTLYILDEPTTGLHVDDIARLLDVLHRLV--DNGDTVLVIEHNLDVIKT--ADYIIDL  618 (670)
T ss_dssp             HHHHHHHHHHHHSCCCSCEEEEEESTTTTCCHHHHHHHHHHHHHHH--HTTCEEEEECCCHHHHTT--CSEEEEE
T ss_pred             HHHHHHHHHHHhhCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHH--HCCCEEEEEeCCHHHHHh--CCEEEEe
Confidence            33445677777554   46999998732      233444443332  247889999999987643  6677766

>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0

Probab=97.61  E-value=3.8e-05  Score=56.34  Aligned_cols=27  Identities=15%  Similarity=0.383  Sum_probs=24.0

Q ss_pred             CeeEEEEEecCCCcHHHHHHHHHHHhc
Q 039455           48 DVRFIGICGMGGIGKTTLAKVLYNTLK   74 (216)
Q Consensus        48 ~~~~i~I~G~~GiGKTtL~~~~~~~~~   74 (216)
                      .+..++|+||+|+|||||++.+.....
T Consensus        18 ~g~~ivl~GPSGaGKsTL~~~L~~~~~   44 (197)
T 3ney_A           18 GRKTLVLIGASGVGRSHIKNALLSQNP   44 (197)
T ss_dssp             SCCEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred             CCCEEEEECcCCCCHHHHHHHHHhhCC
Confidence            567999999999999999999998653

>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}

Probab=97.60  E-value=8.7e-05  Score=56.31  Aligned_cols=44  Identities=14%  Similarity=0.016  Sum_probs=30.5

Q ss_pred             cchhHHHHHHHHHhcCCCCeeEEEEEecCCCcHHHHHHHHHHHh
Q 039455           30 GIASRMEKMNGYLEAGLDDVRFIGICGMGGIGKTTLAKVLYNTL   73 (216)
Q Consensus        30 gR~~~~~~l~~~l~~~~~~~~~i~I~G~~GiGKTtL~~~~~~~~   73 (216)
                      +...-+.++.+-..........|+|+|++|+||||+++.++..+
T Consensus        10 ~~~~~~~~~~~~~~~~~~~~~~I~l~G~~GsGKsT~a~~L~~~~   53 (243)
T 3tlx_A           10 STIDLLNELKRRYACLSKPDGRYIFLGAPGSGKGTQSLNLKKSH   53 (243)
T ss_dssp             CHHHHHHHHHHHHHHHTSCCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             chHHHHHHHHHHHHhccCCCcEEEEECCCCCCHHHHHHHHHHHh
Confidence            33344444444333223355789999999999999999998765

>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A

Probab=97.59  E-value=0.00055  Score=56.25  Aligned_cols=36  Identities=28%  Similarity=0.175  Sum_probs=28.2

Q ss_pred             CeeEEEEEecCCCcHHHHHHHHHHHhcCCCCceEee
Q 039455           48 DVRFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFL   83 (216)
Q Consensus        48 ~~~~i~I~G~~GiGKTtL~~~~~~~~~~~~~~~~~~   83 (216)
                      .+.+++++|++|+||||++..++..+...-..+..+
T Consensus        96 ~~~vI~lvG~~GsGKTTt~~kLA~~l~~~G~kVllv  131 (433)
T 3kl4_A           96 LPFIIMLVGVQGSGKTTTAGKLAYFYKKRGYKVGLV  131 (433)
T ss_dssp             SSEEEEECCCTTSCHHHHHHHHHHHHHHTTCCEEEE
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEE
Confidence            368999999999999999999998776543334333

>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1

Probab=97.59  E-value=0.0001  Score=59.40  Aligned_cols=50  Identities=24%  Similarity=0.246  Sum_probs=36.3

Q ss_pred             HHHHHHHHh-cCCCCeeEEEEEecCCCcHHHHHHHHHHHhcCCCCceEeec
Q 039455           35 MEKMNGYLE-AGLDDVRFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLA   84 (216)
Q Consensus        35 ~~~l~~~l~-~~~~~~~~i~I~G~~GiGKTtL~~~~~~~~~~~~~~~~~~~   84 (216)
                      ...|...|. .+-+.+.++.|.|++|+|||+|+..++......-..+.|++
T Consensus        59 ~~~LD~~Lg~GGl~~G~li~I~G~pGsGKTtlal~la~~~~~~g~~vlyi~  109 (366)
T 1xp8_A           59 SLSLDLALGVGGIPRGRITEIYGPESGGKTTLALAIVAQAQKAGGTCAFID  109 (366)
T ss_dssp             CHHHHHHTSSSSEETTSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred             CHHHHHHhCCCCccCCcEEEEEcCCCCChHHHHHHHHHHHHHCCCeEEEEE
Confidence            345555554 34345679999999999999999999886654445677776

>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1

Probab=97.59  E-value=8.3e-05  Score=53.85  Aligned_cols=27  Identities=26%  Similarity=0.448  Sum_probs=23.6

Q ss_pred             eEEEEEecCCCcHHHHHHHHHHHhcCC
Q 039455           50 RFIGICGMGGIGKTTLAKVLYNTLKDQ   76 (216)
Q Consensus        50 ~~i~I~G~~GiGKTtL~~~~~~~~~~~   76 (216)
                      ..|+|.|++|+||||+++.++.++...
T Consensus         2 ~~I~i~G~~GsGKsT~~~~L~~~l~~~   28 (194)
T 1nks_A            2 KIGIVTGIPGVGKSTVLAKVKEILDNQ   28 (194)
T ss_dssp             EEEEEEECTTSCHHHHHHHHHHHHHTT
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHHHhc
Confidence            468999999999999999999987643

>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20

Probab=97.59  E-value=8.1e-05  Score=54.77  Aligned_cols=45  Identities=11%  Similarity=0.329  Sum_probs=34.2

Q ss_pred             ccchhHHHHHHHHHhcCCCCeeEEEEEecCCCcHHHHHHHHHHHhc
Q 039455           29 VGIASRMEKMNGYLEAGLDDVRFIGICGMGGIGKTTLAKVLYNTLK   74 (216)
Q Consensus        29 vgR~~~~~~l~~~l~~~~~~~~~i~I~G~~GiGKTtL~~~~~~~~~   74 (216)
                      +.-...+..+..++... ++...++++||+|+|||+++..++..+.
T Consensus        39 ~~~~~f~~~l~~~~~~i-Pkkn~ili~GPPGtGKTt~a~ala~~l~   83 (212)
T 1tue_A           39 IEFITFLGALKSFLKGT-PKKNCLVFCGPANTGKSYFGMSFIHFIQ   83 (212)
T ss_dssp             CCHHHHHHHHHHHHHTC-TTCSEEEEESCGGGCHHHHHHHHHHHHT
T ss_pred             cCHHHHHHHHHHHHhcC-CcccEEEEECCCCCCHHHHHHHHHHHhC
Confidence            44445667777777642 3345799999999999999999998764

>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}

Probab=97.57  E-value=5.8e-05  Score=56.93  Aligned_cols=45  Identities=20%  Similarity=0.265  Sum_probs=31.6

Q ss_pred             HHHhcCCCCeeEEEEEecCCCcHHHHHHHHHHHhcCCCCceEeec
Q 039455           40 GYLEAGLDDVRFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLA   84 (216)
Q Consensus        40 ~~l~~~~~~~~~i~I~G~~GiGKTtL~~~~~~~~~~~~~~~~~~~   84 (216)
                      ..|..+-..+.+++|.|++|+|||||+..++......-..+.|++
T Consensus        14 ~~l~gGl~~G~~~~i~G~~GsGKTtl~~~~~~~~~~~~~~v~~~~   58 (247)
T 2dr3_A           14 EILHGGIPERNVVLLSGGPGTGKTIFSQQFLWNGLKMGEPGIYVA   58 (247)
T ss_dssp             HHTTTSEETTCEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred             HHcCCCCCCCcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEE
Confidence            334433345679999999999999999888765544444566654

>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}

Probab=97.57  E-value=6.1e-05  Score=54.67  Aligned_cols=26  Identities=35%  Similarity=0.411  Sum_probs=23.3

Q ss_pred             CeeEEEEEecCCCcHHHHHHHHHHHh
Q 039455           48 DVRFIGICGMGGIGKTTLAKVLYNTL   73 (216)
Q Consensus        48 ~~~~i~I~G~~GiGKTtL~~~~~~~~   73 (216)
                      .+..|+|.|++|+||||+++.++..+
T Consensus         4 ~~~~I~l~G~~GsGKST~~~~L~~~l   29 (193)
T 2rhm_A            4 TPALIIVTGHPATGKTTLSQALATGL   29 (193)
T ss_dssp             CCEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHc
Confidence            35789999999999999999998866

>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*

Probab=97.57  E-value=0.00027  Score=55.82  Aligned_cols=37  Identities=24%  Similarity=0.384  Sum_probs=28.3

Q ss_pred             HHHHHHhcCCCCeeEEEEEecCCCcHHHHHHHHHHHh
Q 039455           37 KMNGYLEAGLDDVRFIGICGMGGIGKTTLAKVLYNTL   73 (216)
Q Consensus        37 ~l~~~l~~~~~~~~~i~I~G~~GiGKTtL~~~~~~~~   73 (216)
                      .|...|..+-+.+.++.|+|++|+|||+|+..++...
T Consensus        86 ~LD~~l~GGl~~g~i~~i~G~~gsGKT~la~~la~~~  122 (322)
T 2i1q_A           86 ELDSVLGGGLESQSVTEFAGVFGSGKTQIMHQSCVNL  122 (322)
T ss_dssp             HHHHHTTSSEETTEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred             hHHHhcCCCccCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence            4444454443456899999999999999999998753

>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}

Probab=97.57  E-value=7.9e-05  Score=64.05  Aligned_cols=51  Identities=20%  Similarity=0.341  Sum_probs=41.7

Q ss_pred             CCcccccccchhHHHHHHHHHhcCCCCeeEEEEEecCCCcHHHHHHHHHHHhcCC
Q 039455           22 PSAVDGLVGIASRMEKMNGYLEAGLDDVRFIGICGMGGIGKTTLAKVLYNTLKDQ   76 (216)
Q Consensus        22 ~~~~~~~vgR~~~~~~l~~~l~~~~~~~~~i~I~G~~GiGKTtL~~~~~~~~~~~   76 (216)
                      |..-..++|.+..++.+...+..+    ..++|+||+|+|||||++.+++.+...
T Consensus        37 p~~l~~i~G~~~~l~~l~~~i~~g----~~vll~Gp~GtGKTtlar~ia~~l~~~   87 (604)
T 3k1j_A           37 EKLIDQVIGQEHAVEVIKTAANQK----RHVLLIGEPGTGKSMLGQAMAELLPTE   87 (604)
T ss_dssp             SSHHHHCCSCHHHHHHHHHHHHTT----CCEEEECCTTSSHHHHHHHHHHTSCCS
T ss_pred             ccccceEECchhhHhhccccccCC----CEEEEEeCCCCCHHHHHHHHhccCCcc
Confidence            344567899999998888877654    589999999999999999999976543

>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}

Probab=97.57  E-value=4.8e-05  Score=54.96  Aligned_cols=26  Identities=31%  Similarity=0.383  Sum_probs=23.1

Q ss_pred             eeEEEEEecCCCcHHHHHHHHHHHhc
Q 039455           49 VRFIGICGMGGIGKTTLAKVLYNTLK   74 (216)
Q Consensus        49 ~~~i~I~G~~GiGKTtL~~~~~~~~~   74 (216)
                      ...|+|+|++|+||||+++.++..+.
T Consensus         5 ~~~i~l~G~~GsGKst~a~~La~~l~   30 (185)
T 3trf_A            5 LTNIYLIGLMGAGKTSVGSQLAKLTK   30 (185)
T ss_dssp             CCEEEEECSTTSSHHHHHHHHHHHHC
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHHhC
Confidence            36899999999999999999998763

>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F

Probab=97.57  E-value=0.00088  Score=52.33  Aligned_cols=35  Identities=29%  Similarity=0.223  Sum_probs=27.7

Q ss_pred             eeEEEEEecCCCcHHHHHHHHHHHhcCCCCceEee
Q 039455           49 VRFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFL   83 (216)
Q Consensus        49 ~~~i~I~G~~GiGKTtL~~~~~~~~~~~~~~~~~~   83 (216)
                      +.+++++|++|+||||++..++..+......+.++
T Consensus        98 ~~vi~i~G~~G~GKTT~~~~la~~~~~~g~~v~l~  132 (297)
T 1j8m_F           98 PYVIMLVGVQGTGKTTTAGKLAYFYKKKGFKVGLV  132 (297)
T ss_dssp             SEEEEEECSSCSSTTHHHHHHHHHHHHTTCCEEEE
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEE
Confidence            67999999999999999999998765543344444

>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}

Probab=97.57  E-value=7e-05  Score=60.11  Aligned_cols=29  Identities=38%  Similarity=0.415  Sum_probs=25.4

Q ss_pred             CeeEEEEEecCCCcHHHHHHHHHHHhcCC
Q 039455           48 DVRFIGICGMGGIGKTTLAKVLYNTLKDQ   76 (216)
Q Consensus        48 ~~~~i~I~G~~GiGKTtL~~~~~~~~~~~   76 (216)
                      .+.+++|+|++|+||||+++.+++.+...
T Consensus       156 ~g~vi~lvG~nGsGKTTll~~Lag~l~~~  184 (359)
T 2og2_A          156 KPAVIMIVGVNGGGKTTSLGKLAHRLKNE  184 (359)
T ss_dssp             SSEEEEEECCTTSCHHHHHHHHHHHHHHT
T ss_pred             CCeEEEEEcCCCChHHHHHHHHHhhcccc
Confidence            46799999999999999999999876543

>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*

Probab=97.57  E-value=5.3e-05  Score=59.70  Aligned_cols=30  Identities=33%  Similarity=0.389  Sum_probs=26.1

Q ss_pred             CCCeeEEEEEecCCCcHHHHHHHHHHHhcC
Q 039455           46 LDDVRFIGICGMGGIGKTTLAKVLYNTLKD   75 (216)
Q Consensus        46 ~~~~~~i~I~G~~GiGKTtL~~~~~~~~~~   75 (216)
                      ...+.+++|.|++|+|||||++.++..+..
T Consensus        87 ~~~g~ivgI~G~sGsGKSTL~~~L~gll~~  116 (312)
T 3aez_A           87 RPVPFIIGVAGSVAVGKSTTARVLQALLAR  116 (312)
T ss_dssp             SCCCEEEEEECCTTSCHHHHHHHHHHHHHT
T ss_pred             CCCCEEEEEECCCCchHHHHHHHHHhhccc
Confidence            356789999999999999999999987653

>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*

Probab=97.57  E-value=8.4e-05  Score=57.86  Aligned_cols=27  Identities=22%  Similarity=0.370  Sum_probs=23.9

Q ss_pred             CCeeEEEEEecCCCcHHHHHHHHHHHh
Q 039455           47 DDVRFIGICGMGGIGKTTLAKVLYNTL   73 (216)
Q Consensus        47 ~~~~~i~I~G~~GiGKTtL~~~~~~~~   73 (216)
                      ..+..++|+|++|+||||+++.++...
T Consensus        31 ~~~~livl~G~sGsGKSTla~~L~~~~   57 (287)
T 1gvn_B           31 ESPTAFLLGGQPGSGKTSLRSAIFEET   57 (287)
T ss_dssp             SSCEEEEEECCTTSCTHHHHHHHHHHT
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence            346799999999999999999998765

>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*

Probab=97.56  E-value=0.00038  Score=56.72  Aligned_cols=36  Identities=22%  Similarity=0.315  Sum_probs=27.1

Q ss_pred             HHHHHHhcCCCCeeEEEEEecCCCcHHHHHHHHHHH
Q 039455           37 KMNGYLEAGLDDVRFIGICGMGGIGKTTLAKVLYNT   72 (216)
Q Consensus        37 ~l~~~l~~~~~~~~~i~I~G~~GiGKTtL~~~~~~~   72 (216)
                      .|...|..+-..+.++.|+|++|+|||||+..++..
T Consensus       166 ~LD~lLgGGI~~Gei~~I~G~sGsGKTTLl~~la~~  201 (400)
T 3lda_A          166 NLDTLLGGGVETGSITELFGEFRTGKSQLCHTLAVT  201 (400)
T ss_dssp             HHHHHTTTSEETTSEEEEEESTTSSHHHHHHHHHHH
T ss_pred             hHHHHhcCCcCCCcEEEEEcCCCCChHHHHHHHHHH
Confidence            344455444445689999999999999999987643

>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11

Probab=97.56  E-value=3.7e-05  Score=56.15  Aligned_cols=25  Identities=40%  Similarity=0.521  Sum_probs=22.5

Q ss_pred             eEEEEEecCCCcHHHHHHHHHHHhc
Q 039455           50 RFIGICGMGGIGKTTLAKVLYNTLK   74 (216)
Q Consensus        50 ~~i~I~G~~GiGKTtL~~~~~~~~~   74 (216)
                      ..++|+|++|+|||||++.+++.+.
T Consensus         2 ~~i~i~G~nG~GKTTll~~l~g~~~   26 (189)
T 2i3b_A            2 RHVFLTGPPGVGKTTLIHKASEVLK   26 (189)
T ss_dssp             CCEEEESCCSSCHHHHHHHHHHHHH
T ss_pred             CEEEEECCCCChHHHHHHHHHhhcc
Confidence            4689999999999999999998764

>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}

Probab=97.56  E-value=3.9e-05  Score=56.55  Aligned_cols=26  Identities=31%  Similarity=0.603  Sum_probs=23.5

Q ss_pred             CeeEEEEEecCCCcHHHHHHHHHHHh
Q 039455           48 DVRFIGICGMGGIGKTTLAKVLYNTL   73 (216)
Q Consensus        48 ~~~~i~I~G~~GiGKTtL~~~~~~~~   73 (216)
                      .+..++|+|++|+|||||++.++..+
T Consensus        11 ~~~~i~l~G~sGsGKsTl~~~L~~~~   36 (204)
T 2qor_A           11 RIPPLVVCGPSGVGKGTLIKKVLSEF   36 (204)
T ss_dssp             CCCCEEEECCTTSCHHHHHHHHHHHC
T ss_pred             cCCEEEEECCCCCCHHHHHHHHHHhC
Confidence            45789999999999999999998876

>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}

Probab=97.55  E-value=0.00011  Score=58.08  Aligned_cols=48  Identities=23%  Similarity=0.257  Sum_probs=33.3

Q ss_pred             cccchhHHHHHHHHHhcC--CCCeeEEEEEecCCCcHHHHHHHHHHHhcC
Q 039455           28 LVGIASRMEKMNGYLEAG--LDDVRFIGICGMGGIGKTTLAKVLYNTLKD   75 (216)
Q Consensus        28 ~vgR~~~~~~l~~~l~~~--~~~~~~i~I~G~~GiGKTtL~~~~~~~~~~   75 (216)
                      ++|....+..+..-+...  .....+++|.|++|+|||||++.+...+..
T Consensus        69 ~~~~~~~l~~~~~~~l~~~~~~~p~iigI~GpsGSGKSTl~~~L~~ll~~  118 (321)
T 3tqc_A           69 YVTARQTLQQATYQFLGKPEPKVPYIIGIAGSVAVGKSTTSRVLKALLSR  118 (321)
T ss_dssp             HHHHHHHHHHHHHHHHTCCCCCCCEEEEEECCTTSSHHHHHHHHHHHHTT
T ss_pred             hhcchHHHHHHHHHHhccCCCCCCEEEEEECCCCCCHHHHHHHHHHHhcc
Confidence            445555555544433322  344569999999999999999999887653

>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*

Probab=97.55  E-value=0.00035  Score=51.61  Aligned_cols=23  Identities=35%  Similarity=0.320  Sum_probs=21.0

Q ss_pred             EEEEEecCCCcHHHHHHHHHHHh
Q 039455           51 FIGICGMGGIGKTTLAKVLYNTL   73 (216)
Q Consensus        51 ~i~I~G~~GiGKTtL~~~~~~~~   73 (216)
                      +|+|.||+|+||+|.++.++.++
T Consensus         2 ~Iil~GpPGsGKgTqa~~La~~~   24 (206)
T 3sr0_A            2 ILVFLGPPGAGKGTQAKRLAKEK   24 (206)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHH
Confidence            57899999999999999999875

>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}

Probab=97.54  E-value=9.7e-05  Score=53.46  Aligned_cols=29  Identities=31%  Similarity=0.431  Sum_probs=25.3

Q ss_pred             CeeEEEEEecCCCcHHHHHHHHHHHhcCC
Q 039455           48 DVRFIGICGMGGIGKTTLAKVLYNTLKDQ   76 (216)
Q Consensus        48 ~~~~i~I~G~~GiGKTtL~~~~~~~~~~~   76 (216)
                      .+..|+|.|++|+||||+++.++..+...
T Consensus        12 ~~~~i~l~G~~GsGKsT~~~~L~~~l~~~   40 (186)
T 2yvu_A           12 KGIVVWLTGLPGSGKTTIATRLADLLQKE   40 (186)
T ss_dssp             CCEEEEEECCTTSSHHHHHHHHHHHHHHT
T ss_pred             CCcEEEEEcCCCCCHHHHHHHHHHHHHhc
Confidence            46799999999999999999999877543

>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}

Probab=97.54  E-value=7.1e-05  Score=54.06  Aligned_cols=25  Identities=32%  Similarity=0.254  Sum_probs=22.7

Q ss_pred             eeEEEEEecCCCcHHHHHHHHHHHh
Q 039455           49 VRFIGICGMGGIGKTTLAKVLYNTL   73 (216)
Q Consensus        49 ~~~i~I~G~~GiGKTtL~~~~~~~~   73 (216)
                      +..|+|+|++|+||||+++.++..+
T Consensus         4 g~~I~l~G~~GsGKST~~~~La~~l   28 (186)
T 3cm0_A            4 GQAVIFLGPPGAGKGTQASRLAQEL   28 (186)
T ss_dssp             EEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHh
Confidence            5689999999999999999998765

>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1

Probab=97.53  E-value=6e-05  Score=54.04  Aligned_cols=22  Identities=32%  Similarity=0.422  Sum_probs=20.6

Q ss_pred             eEEEEEecCCCcHHHHHHHHHH
Q 039455           50 RFIGICGMGGIGKTTLAKVLYN   71 (216)
Q Consensus        50 ~~i~I~G~~GiGKTtL~~~~~~   71 (216)
                      ..|+|.|++|+||||+++.++.
T Consensus         3 ~~I~i~G~~GsGKST~a~~L~~   24 (181)
T 1ly1_A            3 KIILTIGCPGSGKSTWAREFIA   24 (181)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHH
T ss_pred             eEEEEecCCCCCHHHHHHHHHh
Confidence            5799999999999999999987

>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*

Probab=97.53  E-value=0.00011  Score=57.69  Aligned_cols=28  Identities=36%  Similarity=0.400  Sum_probs=25.0

Q ss_pred             CCeeEEEEEecCCCcHHHHHHHHHHHhc
Q 039455           47 DDVRFIGICGMGGIGKTTLAKVLYNTLK   74 (216)
Q Consensus        47 ~~~~~i~I~G~~GiGKTtL~~~~~~~~~   74 (216)
                      ..+.+++|+|++|+|||||++.+.+.+.
T Consensus        78 ~~g~iigI~G~~GsGKSTl~~~L~~~l~  105 (308)
T 1sq5_A           78 RIPYIISIAGSVAVGKSTTARVLQALLS  105 (308)
T ss_dssp             CCCEEEEEEECTTSSHHHHHHHHHHHHT
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHHHHh
Confidence            4568999999999999999999998765

>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A

Probab=97.53  E-value=5.8e-05  Score=54.64  Aligned_cols=26  Identities=23%  Similarity=0.565  Sum_probs=23.3

Q ss_pred             eEEEEEecCCCcHHHHHHHHHHHhcC
Q 039455           50 RFIGICGMGGIGKTTLAKVLYNTLKD   75 (216)
Q Consensus        50 ~~i~I~G~~GiGKTtL~~~~~~~~~~   75 (216)
                      ..|+|.|++|+||||+++.++..+..
T Consensus         4 ~~I~i~G~~GsGKsT~~~~L~~~l~~   29 (192)
T 1kht_A            4 KVVVVTGVPGVGSTTSSQLAMDNLRK   29 (192)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHHHHHT
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHHHh
Confidence            58999999999999999999987653

>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}

Probab=97.53  E-value=3.8e-05  Score=56.93  Aligned_cols=47  Identities=21%  Similarity=0.314  Sum_probs=28.0

Q ss_pred             HHHHhCCceEEEEEeCCC--CHHHHHHhhcCCCCCCCCcEEEEEeCCchhhhc
Q 039455          124 IRWRLCRKRVLVVLDDVD--QLEQLQALAGNHDWFGFGSRIIITTRDEHVLKG  174 (216)
Q Consensus       124 l~~~l~~~~~llvlDd~~--~~~~~~~l~~~~~~~~~~~~il~tsr~~~~~~~  174 (216)
                      +...+..++-+|++|+.-  ....+..++..+   ..+..|| +||+...+..
T Consensus       115 lAraL~~~p~lllLDEPts~~~~~l~~~l~~l---~~g~tii-vtHd~~~~~~  163 (208)
T 3b85_A          115 YMRGRTLNDAFVILDEAQNTTPAQMKMFLTRL---GFGSKMV-VTGDITQVDL  163 (208)
T ss_dssp             GGTTCCBCSEEEEECSGGGCCHHHHHHHHTTB---CTTCEEE-EEEC------
T ss_pred             HHHHHhcCCCEEEEeCCccccHHHHHHHHHHh---cCCCEEE-EECCHHHHhC
Confidence            345556678899999884  344555555554   2467788 9998765544

>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}

Probab=97.53  E-value=4.6e-05  Score=55.95  Aligned_cols=25  Identities=20%  Similarity=0.371  Sum_probs=22.7

Q ss_pred             eeEEEEEecCCCcHHHHHHHHHHHh
Q 039455           49 VRFIGICGMGGIGKTTLAKVLYNTL   73 (216)
Q Consensus        49 ~~~i~I~G~~GiGKTtL~~~~~~~~   73 (216)
                      ..+|+|+|++|+||||+++.++..+
T Consensus        18 ~~~I~l~G~~GsGKSTla~~L~~~l   42 (202)
T 3t61_A           18 PGSIVVMGVSGSGKSSVGEAIAEAC   42 (202)
T ss_dssp             SSCEEEECSTTSCHHHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHh
Confidence            3589999999999999999999876

>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A

Probab=97.52  E-value=6.2e-05  Score=57.49  Aligned_cols=25  Identities=24%  Similarity=0.118  Sum_probs=22.3

Q ss_pred             eEEEEEecCCCcHHHHHHHHHHHhc
Q 039455           50 RFIGICGMGGIGKTTLAKVLYNTLK   74 (216)
Q Consensus        50 ~~i~I~G~~GiGKTtL~~~~~~~~~   74 (216)
                      .+++|+|++|+|||||++.++....
T Consensus         2 ~li~I~G~~GSGKSTla~~La~~~~   26 (253)
T 2ze6_A            2 LLHLIYGPTCSGKTDMAIQIAQETG   26 (253)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHHHC
T ss_pred             eEEEEECCCCcCHHHHHHHHHhcCC
Confidence            4789999999999999999998753

>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A

Probab=97.52  E-value=6.1e-05  Score=57.17  Aligned_cols=25  Identities=24%  Similarity=0.255  Sum_probs=22.8

Q ss_pred             eeEEEEEecCCCcHHHHHHHHHHHh
Q 039455           49 VRFIGICGMGGIGKTTLAKVLYNTL   73 (216)
Q Consensus        49 ~~~i~I~G~~GiGKTtL~~~~~~~~   73 (216)
                      ...++|.|++|+|||||++.++..+
T Consensus        27 ~~~i~l~G~~GsGKSTl~k~La~~l   51 (246)
T 2bbw_A           27 LLRAVILGPPGSGKGTVCQRIAQNF   51 (246)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHHh
Confidence            4799999999999999999999765

>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*

Probab=97.51  E-value=8e-05  Score=69.22  Aligned_cols=61  Identities=18%  Similarity=0.187  Sum_probs=37.5

Q ss_pred             hhhHHHHHHHhCCceEEEEEeCCCCH------HHHHHhhcCCCCCCCCcEEEEEeCCchhhhccCCcceEEe
Q 039455          118 HKGINLIRWRLCRKRVLVVLDDVDQL------EQLQALAGNHDWFGFGSRIIITTRDEHVLKGHGVTNIYKV  183 (216)
Q Consensus       118 ~~~~~~l~~~l~~~~~llvlDd~~~~------~~~~~l~~~~~~~~~~~~il~tsr~~~~~~~~~~~~~~~l  183 (216)
                      +...-.+.+.+-.++-+++|||.-+.      ..+...+...   ..+.++|++||..+....  ++..+.+
T Consensus       531 q~QriaiARal~~~p~iliLDEpts~LD~~~~~~i~~~l~~~---~~~~t~i~itH~l~~i~~--~d~i~vl  597 (1284)
T 3g5u_A          531 QKQRIAIARALVRNPKILLLDEATSALDTESEAVVQAALDKA---REGRTTIVIAHRLSTVRN--ADVIAGF  597 (1284)
T ss_dssp             HHHHHHHHHHHHHCCSEEEEESTTCSSCHHHHHHHHHHHHHH---HTTSEEEEECSCHHHHTT--CSEEEEC
T ss_pred             HHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHH---cCCCEEEEEecCHHHHHc--CCEEEEE
Confidence            34455677888888889999988321      2233332221   246789999998776544  4444444

>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*

Probab=97.50  E-value=0.00012  Score=57.46  Aligned_cols=32  Identities=22%  Similarity=0.314  Sum_probs=26.7

Q ss_pred             HhcCCCCeeEEEEEecCCCcHHHHHHHHHHHh
Q 039455           42 LEAGLDDVRFIGICGMGGIGKTTLAKVLYNTL   73 (216)
Q Consensus        42 l~~~~~~~~~i~I~G~~GiGKTtL~~~~~~~~   73 (216)
                      +...-+.+..++|+||+|+|||||++.+++.+
T Consensus       119 vsl~i~~Ge~vaIvGpsGsGKSTLl~lL~gl~  150 (305)
T 2v9p_A          119 WLKGIPKKNCLAFIGPPNTGKSMLCNSLIHFL  150 (305)
T ss_dssp             HHHTCTTCSEEEEECSSSSSHHHHHHHHHHHH
T ss_pred             ceEEecCCCEEEEECCCCCcHHHHHHHHhhhc
Confidence            33344567899999999999999999999876

>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*

Probab=97.49  E-value=6.9e-05  Score=55.94  Aligned_cols=24  Identities=42%  Similarity=0.534  Sum_probs=21.9

Q ss_pred             eEEEEEecCCCcHHHHHHHHHHHh
Q 039455           50 RFIGICGMGGIGKTTLAKVLYNTL   73 (216)
Q Consensus        50 ~~i~I~G~~GiGKTtL~~~~~~~~   73 (216)
                      ..|+|+|++|+||||+++.++..+
T Consensus         6 ~~i~i~G~~GsGKSTl~~~L~~~~   29 (227)
T 1cke_A            6 PVITIDGPSGAGKGTLCKAMAEAL   29 (227)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHh
Confidence            589999999999999999998765

>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}

Probab=97.49  E-value=3.7e-05  Score=57.76  Aligned_cols=26  Identities=27%  Similarity=0.257  Sum_probs=17.4

Q ss_pred             CeeEEEEEecCCCcHHHHHHHHH-HHh
Q 039455           48 DVRFIGICGMGGIGKTTLAKVLY-NTL   73 (216)
Q Consensus        48 ~~~~i~I~G~~GiGKTtL~~~~~-~~~   73 (216)
                      .+.+++|+||+|+|||||++.++ ..+
T Consensus        26 ~G~ii~l~Gp~GsGKSTl~~~L~~~~~   52 (231)
T 3lnc_A           26 VGVILVLSSPSGCGKTTVANKLLEKQK   52 (231)
T ss_dssp             CCCEEEEECSCC----CHHHHHHC---
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHhcCC
Confidence            45799999999999999999999 754

>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*

Probab=97.49  E-value=6.4e-05  Score=55.39  Aligned_cols=28  Identities=46%  Similarity=0.522  Sum_probs=24.0

Q ss_pred             CCCeeEEEEEecCCCcHHHHHHHHHHHh
Q 039455           46 LDDVRFIGICGMGGIGKTTLAKVLYNTL   73 (216)
Q Consensus        46 ~~~~~~i~I~G~~GiGKTtL~~~~~~~~   73 (216)
                      -..+..++|+|++|+||||+++.++..+
T Consensus        18 ~~~~~~i~i~G~~GsGKSTl~~~L~~~~   45 (207)
T 2qt1_A           18 GSKTFIIGISGVTNSGKTTLAKNLQKHL   45 (207)
T ss_dssp             SCCCEEEEEEESTTSSHHHHHHHHHTTS
T ss_pred             CCCCeEEEEECCCCCCHHHHHHHHHHhc
Confidence            3456799999999999999999998754

>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A

Probab=97.48  E-value=6e-05  Score=53.61  Aligned_cols=20  Identities=50%  Similarity=0.743  Sum_probs=18.8

Q ss_pred             eEEEEEecCCCcHHHHHHHH
Q 039455           50 RFIGICGMGGIGKTTLAKVL   69 (216)
Q Consensus        50 ~~i~I~G~~GiGKTtL~~~~   69 (216)
                      .+|+|+|++|+||||+++.+
T Consensus         2 ~~I~l~G~~GsGKsT~a~~L   21 (179)
T 3lw7_A            2 KVILITGMPGSGKSEFAKLL   21 (179)
T ss_dssp             CEEEEECCTTSCHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHH
Confidence            47899999999999999999

>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A

Probab=97.48  E-value=6.3e-05  Score=54.14  Aligned_cols=25  Identities=40%  Similarity=0.469  Sum_probs=22.6

Q ss_pred             eeEEEEEecCCCcHHHHHHHHHHHh
Q 039455           49 VRFIGICGMGGIGKTTLAKVLYNTL   73 (216)
Q Consensus        49 ~~~i~I~G~~GiGKTtL~~~~~~~~   73 (216)
                      ...|+|+|++|+||||+++.++..+
T Consensus        11 ~~~i~i~G~~GsGKst~~~~l~~~~   35 (180)
T 3iij_A           11 LPNILLTGTPGVGKTTLGKELASKS   35 (180)
T ss_dssp             CCCEEEECSTTSSHHHHHHHHHHHH
T ss_pred             CCeEEEEeCCCCCHHHHHHHHHHHh
Confidence            4679999999999999999999765

>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*

Probab=97.47  E-value=9.5e-05  Score=53.16  Aligned_cols=28  Identities=29%  Similarity=0.299  Sum_probs=24.1

Q ss_pred             CCeeEEEEEecCCCcHHHHHHHHHHHhc
Q 039455           47 DDVRFIGICGMGGIGKTTLAKVLYNTLK   74 (216)
Q Consensus        47 ~~~~~i~I~G~~GiGKTtL~~~~~~~~~   74 (216)
                      ..+..|+|+|++|+||||+++.++..+.
T Consensus         3 ~~g~~i~l~G~~GsGKST~~~~L~~~l~   30 (179)
T 2pez_A            3 MRGCTVWLTGLSGAGKTTVSMALEEYLV   30 (179)
T ss_dssp             -CCEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHHHHHh
Confidence            3467899999999999999999998764

>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A

Probab=97.47  E-value=0.00011  Score=61.27  Aligned_cols=35  Identities=26%  Similarity=0.294  Sum_probs=27.8

Q ss_pred             CeeEEEEEecCCCcHHHHHHHHHHHhcCCCCceEe
Q 039455           48 DVRFIGICGMGGIGKTTLAKVLYNTLKDQFEASSF   82 (216)
Q Consensus        48 ~~~~i~I~G~~GiGKTtL~~~~~~~~~~~~~~~~~   82 (216)
                      .+.+++|+|++|+|||||++.+++.+......+.+
T Consensus       292 ~GeVI~LVGpNGSGKTTLl~~LAgll~~~~G~V~l  326 (503)
T 2yhs_A          292 APFVILMVGVNGVGKTTTIGKLARQFEQQGKSVML  326 (503)
T ss_dssp             TTEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEE
T ss_pred             CCeEEEEECCCcccHHHHHHHHHHHhhhcCCeEEE
Confidence            46899999999999999999999877644333333

>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1

Probab=97.46  E-value=8.5e-05  Score=53.78  Aligned_cols=25  Identities=32%  Similarity=0.364  Sum_probs=22.7

Q ss_pred             CeeEEEEEecCCCcHHHHHHHHHHH
Q 039455           48 DVRFIGICGMGGIGKTTLAKVLYNT   72 (216)
Q Consensus        48 ~~~~i~I~G~~GiGKTtL~~~~~~~   72 (216)
                      ....|+|+|++|+||||+++.++..
T Consensus         9 ~~~~I~l~G~~GsGKSTv~~~La~~   33 (184)
T 1y63_A            9 KGINILITGTPGTGKTSMAEMIAAE   33 (184)
T ss_dssp             SSCEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHHh
Confidence            4578999999999999999999886

>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}

Probab=97.46  E-value=8.2e-05  Score=56.76  Aligned_cols=26  Identities=38%  Similarity=0.461  Sum_probs=22.9

Q ss_pred             CeeEEEEEecCCCcHHHHHHHHHHHh
Q 039455           48 DVRFIGICGMGGIGKTTLAKVLYNTL   73 (216)
Q Consensus        48 ~~~~i~I~G~~GiGKTtL~~~~~~~~   73 (216)
                      .+.+|+|.|++|+||||+++.++.++
T Consensus        26 ~g~~I~I~G~~GsGKSTl~k~La~~L   51 (252)
T 4e22_A           26 IAPVITVDGPSGAGKGTLCKALAESL   51 (252)
T ss_dssp             TSCEEEEECCTTSSHHHHHHHHHHHT
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHhc
Confidence            45799999999999999999999654

>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A

Probab=97.46  E-value=9.3e-05  Score=53.81  Aligned_cols=25  Identities=24%  Similarity=0.290  Sum_probs=22.8

Q ss_pred             eeEEEEEecCCCcHHHHHHHHHHHh
Q 039455           49 VRFIGICGMGGIGKTTLAKVLYNTL   73 (216)
Q Consensus        49 ~~~i~I~G~~GiGKTtL~~~~~~~~   73 (216)
                      ...|+|.|++|+||||+++.++..+
T Consensus         9 ~~~I~l~G~~GsGKsT~~~~La~~l   33 (196)
T 2c95_A            9 TNIIFVVGGPGSGKGTQCEKIVQKY   33 (196)
T ss_dssp             SCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHHh
Confidence            4689999999999999999999865

>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2

Probab=97.45  E-value=7.9e-05  Score=53.39  Aligned_cols=24  Identities=42%  Similarity=0.516  Sum_probs=21.7

Q ss_pred             EEEEEecCCCcHHHHHHHHHHHhc
Q 039455           51 FIGICGMGGIGKTTLAKVLYNTLK   74 (216)
Q Consensus        51 ~i~I~G~~GiGKTtL~~~~~~~~~   74 (216)
                      .|+|+|++|+||||+++.++..+.
T Consensus         6 ~i~i~G~~GsGKsTla~~La~~l~   29 (175)
T 1via_A            6 NIVFIGFMGSGKSTLARALAKDLD   29 (175)
T ss_dssp             CEEEECCTTSCHHHHHHHHHHHHT
T ss_pred             EEEEEcCCCCCHHHHHHHHHHHcC
Confidence            589999999999999999998763

>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}

Probab=97.45  E-value=0.00014  Score=55.40  Aligned_cols=28  Identities=25%  Similarity=0.360  Sum_probs=24.5

Q ss_pred             CCeeEEEEEecCCCcHHHHHHHHHHHhc
Q 039455           47 DDVRFIGICGMGGIGKTTLAKVLYNTLK   74 (216)
Q Consensus        47 ~~~~~i~I~G~~GiGKTtL~~~~~~~~~   74 (216)
                      ..+..++|+|++|+||||+++.++..+.
T Consensus        30 ~~~~~i~l~G~~GsGKSTla~~L~~~l~   57 (253)
T 2p5t_B           30 KQPIAILLGGQSGAGKTTIHRIKQKEFQ   57 (253)
T ss_dssp             SSCEEEEEESCGGGTTHHHHHHHHHHTT
T ss_pred             cCCeEEEEECCCCCCHHHHHHHHHHhcC
Confidence            3467999999999999999999998764

>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}

Probab=97.44  E-value=0.0001  Score=54.23  Aligned_cols=28  Identities=25%  Similarity=0.368  Sum_probs=24.5

Q ss_pred             eeEEEEEecCCCcHHHHHHHHHHHhcCC
Q 039455           49 VRFIGICGMGGIGKTTLAKVLYNTLKDQ   76 (216)
Q Consensus        49 ~~~i~I~G~~GiGKTtL~~~~~~~~~~~   76 (216)
                      +..|+|.|++|+||||+++.++..+...
T Consensus         4 ~~~I~i~G~~GsGKsT~~~~L~~~l~~~   31 (213)
T 2plr_A            4 GVLIAFEGIDGSGKSSQATLLKDWIELK   31 (213)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHHHHTTT
T ss_pred             CeEEEEEcCCCCCHHHHHHHHHHHHhhc
Confidence            4689999999999999999999877543

>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*

Probab=97.44  E-value=0.00014  Score=53.69  Aligned_cols=28  Identities=25%  Similarity=0.293  Sum_probs=24.5

Q ss_pred             eeEEEEEecCCCcHHHHHHHHHHHhcCC
Q 039455           49 VRFIGICGMGGIGKTTLAKVLYNTLKDQ   76 (216)
Q Consensus        49 ~~~i~I~G~~GiGKTtL~~~~~~~~~~~   76 (216)
                      +..|+|+|++|+||||+++.++..+...
T Consensus         9 ~~~I~l~G~~GsGKsT~~~~L~~~l~~~   36 (215)
T 1nn5_A            9 GALIVLEGVDRAGKSTQSRKLVEALCAA   36 (215)
T ss_dssp             CCEEEEEESTTSSHHHHHHHHHHHHHHT
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHHHHHc
Confidence            5789999999999999999999876543

>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}

Probab=97.44  E-value=8.6e-05  Score=54.52  Aligned_cols=21  Identities=38%  Similarity=0.593  Sum_probs=20.0

Q ss_pred             EEEEEecCCCcHHHHHHHHHH
Q 039455           51 FIGICGMGGIGKTTLAKVLYN   71 (216)
Q Consensus        51 ~i~I~G~~GiGKTtL~~~~~~   71 (216)
                      .|+|+|++|+||||+++.++.
T Consensus         3 ~i~i~G~~GsGKSTl~~~L~~   23 (204)
T 2if2_A            3 RIGLTGNIGCGKSTVAQMFRE   23 (204)
T ss_dssp             EEEEEECTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHHHH
Confidence            689999999999999999987

>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1

Probab=97.43  E-value=0.0001  Score=53.46  Aligned_cols=25  Identities=20%  Similarity=0.179  Sum_probs=22.5

Q ss_pred             eeEEEEEecCCCcHHHHHHHHHHHh
Q 039455           49 VRFIGICGMGGIGKTTLAKVLYNTL   73 (216)
Q Consensus        49 ~~~i~I~G~~GiGKTtL~~~~~~~~   73 (216)
                      +..|+|.|++|+||||+++.++..+
T Consensus         3 ~~~I~l~G~~GsGKsT~a~~L~~~~   27 (196)
T 1tev_A            3 PLVVFVLGGPGAGKGTQCARIVEKY   27 (196)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             ceEEEEECCCCCCHHHHHHHHHHHh
Confidence            3689999999999999999998765

>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*

Probab=97.41  E-value=0.00026  Score=56.34  Aligned_cols=38  Identities=24%  Similarity=0.303  Sum_probs=29.1

Q ss_pred             HHHHHhcCCCCeeEEEEEecCCCcHHHHHHHHHHHhcC
Q 039455           38 MNGYLEAGLDDVRFIGICGMGGIGKTTLAKVLYNTLKD   75 (216)
Q Consensus        38 l~~~l~~~~~~~~~i~I~G~~GiGKTtL~~~~~~~~~~   75 (216)
                      +.+.+...-..+..++|+|++|+|||||++.+...+..
T Consensus        44 ~l~~i~~~~~~g~~v~i~G~~GaGKSTLl~~l~g~~~~   81 (337)
T 2qm8_A           44 LIDAVLPQTGRAIRVGITGVPGVGKSTTIDALGSLLTA   81 (337)
T ss_dssp             HHHHHGGGCCCSEEEEEECCTTSCHHHHHHHHHHHHHH
T ss_pred             HHHhCCcccCCCeEEEEECCCCCCHHHHHHHHHHhhhh
Confidence            33444433456789999999999999999999986543

>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*

Probab=97.41  E-value=5.3e-05  Score=70.43  Aligned_cols=62  Identities=16%  Similarity=0.164  Sum_probs=39.2

Q ss_pred             hhhhHHHHHHHhCCceEEEEEeCCCC------HHHHHHhhcCCCCCCCCcEEEEEeCCchhhhccCCcceEEe
Q 039455          117 VHKGINLIRWRLCRKRVLVVLDDVDQ------LEQLQALAGNHDWFGFGSRIIITTRDEHVLKGHGVTNIYKV  183 (216)
Q Consensus       117 ~~~~~~~l~~~l~~~~~llvlDd~~~------~~~~~~l~~~~~~~~~~~~il~tsr~~~~~~~~~~~~~~~l  183 (216)
                      .+...-.+.+++-.++-+|++|+.-+      ...+...+...   ..+..+|++||+.+....  ++..+.+
T Consensus      1175 Gq~Qrv~iARal~~~p~iLiLDEpTs~lD~~~~~~i~~~l~~~---~~~~tvi~isH~l~~i~~--~dri~vl 1242 (1284)
T 3g5u_A         1175 GQKQRIAIARALVRQPHILLLDEATSALDTESEKVVQEALDKA---REGRTCIVIAHRLSTIQN--ADLIVVI 1242 (1284)
T ss_dssp             HHHHHHHHHHHHHHCCSSEEEESCSSSCCHHHHHHHHHHHHHH---SSSSCEEEECSCTTGGGS--CSEEEEE
T ss_pred             HHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHh---CCCCEEEEEecCHHHHHc--CCEEEEE
Confidence            33445567888888899999998732      23333333322   246789999998877644  4544444

>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*

Probab=97.41  E-value=0.00035  Score=57.26  Aligned_cols=30  Identities=23%  Similarity=0.203  Sum_probs=25.7

Q ss_pred             CCeeEEEEEecCCCcHHHHHHHHHHHhcCC
Q 039455           47 DDVRFIGICGMGGIGKTTLAKVLYNTLKDQ   76 (216)
Q Consensus        47 ~~~~~i~I~G~~GiGKTtL~~~~~~~~~~~   76 (216)
                      ..+..++|+||+|+|||||++.+++.+...
T Consensus       165 ~~ggii~I~GpnGSGKTTlL~allg~l~~~  194 (418)
T 1p9r_A          165 RPHGIILVTGPTGSGKSTTLYAGLQELNSS  194 (418)
T ss_dssp             SSSEEEEEECSTTSCHHHHHHHHHHHHCCT
T ss_pred             hcCCeEEEECCCCCCHHHHHHHHHhhcCCC
Confidence            345799999999999999999999877544

>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}

Probab=97.40  E-value=0.00038  Score=64.98  Aligned_cols=26  Identities=23%  Similarity=0.360  Sum_probs=22.8

Q ss_pred             CeeEEEEEecCCCcHHHHHHHHHHHh
Q 039455           48 DVRFIGICGMGGIGKTTLAKVLYNTL   73 (216)
Q Consensus        48 ~~~~i~I~G~~GiGKTtL~~~~~~~~   73 (216)
                      .+..++|+|++|+|||||++.+.+.+
T Consensus      1104 ~Ge~vaIVG~SGsGKSTL~~lL~rl~ 1129 (1321)
T 4f4c_A         1104 PGQTLALVGPSGCGKSTVVALLERFY 1129 (1321)
T ss_dssp             TTCEEEEECSTTSSTTSHHHHHTTSS
T ss_pred             CCCEEEEECCCCChHHHHHHHHhcCc
Confidence            45799999999999999999998744

>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*

Probab=97.39  E-value=7.8e-05  Score=53.80  Aligned_cols=25  Identities=28%  Similarity=0.415  Sum_probs=22.1

Q ss_pred             eEEEEEecCCCcHHHHHHHHHHHhc
Q 039455           50 RFIGICGMGGIGKTTLAKVLYNTLK   74 (216)
Q Consensus        50 ~~i~I~G~~GiGKTtL~~~~~~~~~   74 (216)
                      ..|+|+|++|+||||+++.++..+.
T Consensus         3 ~~I~l~G~~GsGKsT~a~~La~~lg   27 (184)
T 2iyv_A            3 PKAVLVGLPGSGKSTIGRRLAKALG   27 (184)
T ss_dssp             CSEEEECSTTSSHHHHHHHHHHHHT
T ss_pred             CeEEEECCCCCCHHHHHHHHHHHcC
Confidence            4689999999999999999998653

>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*

Probab=97.39  E-value=0.00011  Score=52.19  Aligned_cols=25  Identities=36%  Similarity=0.477  Sum_probs=22.7

Q ss_pred             eEEEEEecCCCcHHHHHHHHHHHhc
Q 039455           50 RFIGICGMGGIGKTTLAKVLYNTLK   74 (216)
Q Consensus        50 ~~i~I~G~~GiGKTtL~~~~~~~~~   74 (216)
                      ..|+|+|++|+||||+++.++.++.
T Consensus         8 ~~i~l~G~~GsGKSTva~~La~~lg   32 (168)
T 1zuh_A            8 QHLVLIGFMGSGKSSLAQELGLALK   32 (168)
T ss_dssp             CEEEEESCTTSSHHHHHHHHHHHHT
T ss_pred             ceEEEECCCCCCHHHHHHHHHHHhC
Confidence            6899999999999999999998764

>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}

Probab=97.39  E-value=0.00011  Score=53.46  Aligned_cols=25  Identities=32%  Similarity=0.323  Sum_probs=22.8

Q ss_pred             eEEEEEecCCCcHHHHHHHHHHHhc
Q 039455           50 RFIGICGMGGIGKTTLAKVLYNTLK   74 (216)
Q Consensus        50 ~~i~I~G~~GiGKTtL~~~~~~~~~   74 (216)
                      ..|+|.|++|+||||+++.++..+.
T Consensus        13 ~~I~l~G~~GsGKsT~a~~L~~~l~   37 (199)
T 2bwj_A           13 KIIFIIGGPGSGKGTQCEKLVEKYG   37 (199)
T ss_dssp             CEEEEEECTTSSHHHHHHHHHHHHT
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHhC
Confidence            6899999999999999999998763

>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}

Probab=97.39  E-value=0.00043  Score=54.58  Aligned_cols=46  Identities=17%  Similarity=0.251  Sum_probs=32.5

Q ss_pred             HHHHHhcCCCCeeEEEEEecCCCcHHHHHHHHHHHhcCCCCceEeec
Q 039455           38 MNGYLEAGLDDVRFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLA   84 (216)
Q Consensus        38 l~~~l~~~~~~~~~i~I~G~~GiGKTtL~~~~~~~~~~~~~~~~~~~   84 (216)
                      |...+ .+-..+..++|.|++|+|||||+..++.....+...+.|++
T Consensus        58 LD~~l-gGl~~G~l~li~G~pG~GKTtl~l~ia~~~a~~g~~vl~~s  103 (315)
T 3bh0_A           58 LDRMT-YGYKRRNFVLIAARPSMGKTAFALKQAKNMSDNDDVVNLHS  103 (315)
T ss_dssp             HHHHH-SSBCTTCEEEEECCTTSSHHHHHHHHHHHHHTTTCEEEEEE
T ss_pred             HHhhc-CCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEE
Confidence            33334 33345689999999999999999999876543334566654

>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*

Probab=97.38  E-value=0.00012  Score=53.92  Aligned_cols=28  Identities=36%  Similarity=0.500  Sum_probs=24.4

Q ss_pred             CeeEEEEEecCCCcHHHHHHHHHHHhcC
Q 039455           48 DVRFIGICGMGGIGKTTLAKVLYNTLKD   75 (216)
Q Consensus        48 ~~~~i~I~G~~GiGKTtL~~~~~~~~~~   75 (216)
                      .+..|+|+|++|+||||+++.++..+..
T Consensus         9 ~~~~I~l~G~~GsGKST~~~~L~~~l~~   36 (212)
T 2wwf_A            9 KGKFIVFEGLDRSGKSTQSKLLVEYLKN   36 (212)
T ss_dssp             CSCEEEEEESTTSSHHHHHHHHHHHHHH
T ss_pred             cCCEEEEEcCCCCCHHHHHHHHHHHHHH
Confidence            3578999999999999999999987643

>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*

Probab=97.38  E-value=0.00015  Score=56.48  Aligned_cols=37  Identities=14%  Similarity=0.141  Sum_probs=28.5

Q ss_pred             CCeeEEEEEecCCCcHHHHHHHHHHHhcCCCC-ceEee
Q 039455           47 DDVRFIGICGMGGIGKTTLAKVLYNTLKDQFE-ASSFL   83 (216)
Q Consensus        47 ~~~~~i~I~G~~GiGKTtL~~~~~~~~~~~~~-~~~~~   83 (216)
                      ..+.+++|.|++|+|||||++.++..+..... .+.|+
T Consensus        33 ~~G~~~~i~G~~G~GKTTl~~~ia~~~~~~~G~~v~~~   70 (296)
T 1cr0_A           33 RGGEVIMVTSGSGMGKSTFVRQQALQWGTAMGKKVGLA   70 (296)
T ss_dssp             CTTCEEEEEESTTSSHHHHHHHHHHHHHHTSCCCEEEE
T ss_pred             CCCeEEEEEeCCCCCHHHHHHHHHHHHHHHcCCeEEEE
Confidence            45689999999999999999999987654322 34444

>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1

Probab=97.38  E-value=9.2e-05  Score=54.47  Aligned_cols=22  Identities=36%  Similarity=0.599  Sum_probs=20.3

Q ss_pred             eEEEEEecCCCcHHHHHHHHHH
Q 039455           50 RFIGICGMGGIGKTTLAKVLYN   71 (216)
Q Consensus        50 ~~i~I~G~~GiGKTtL~~~~~~   71 (216)
                      .+++|+|++|+||||+++.++.
T Consensus         3 ~~i~l~G~~GsGKST~~~~La~   24 (206)
T 1jjv_A            3 YIVGLTGGIGSGKTTIANLFTD   24 (206)
T ss_dssp             EEEEEECSTTSCHHHHHHHHHT
T ss_pred             cEEEEECCCCCCHHHHHHHHHH
Confidence            4799999999999999999976

>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A

Probab=97.38  E-value=0.00025  Score=57.33  Aligned_cols=29  Identities=31%  Similarity=0.279  Sum_probs=25.1

Q ss_pred             CCCCeeEEEEEecCCCcHHHHHHHHHHHh
Q 039455           45 GLDDVRFIGICGMGGIGKTTLAKVLYNTL   73 (216)
Q Consensus        45 ~~~~~~~i~I~G~~GiGKTtL~~~~~~~~   73 (216)
                      .-+.+..++|+|++|+|||||++.+++..
T Consensus       165 ~i~~~~~i~l~G~~GsGKSTl~~~l~~~~  193 (377)
T 1svm_A          165 NIPKKRYWLFKGPIDSGKTTLAAALLELC  193 (377)
T ss_dssp             CCTTCCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             ccCCCCEEEEECCCCCCHHHHHHHHHhhc
Confidence            34556899999999999999999999865

>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}

Probab=97.38  E-value=0.00017  Score=68.90  Aligned_cols=47  Identities=26%  Similarity=0.323  Sum_probs=35.4

Q ss_pred             HHHHHh-cCCCCeeEEEEEecCCCcHHHHHHHHHHHhcCCCCceEeec
Q 039455           38 MNGYLE-AGLDDVRFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLA   84 (216)
Q Consensus        38 l~~~l~-~~~~~~~~i~I~G~~GiGKTtL~~~~~~~~~~~~~~~~~~~   84 (216)
                      |..+|. .+-+.+..+.|+||+|+|||+||.+++.....+-..+.|++
T Consensus      1415 LD~lLG~GGi~~g~~vll~GppGtGKT~LA~ala~ea~~~G~~v~Fi~ 1462 (2050)
T 3cmu_A         1415 LDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFID 1462 (2050)
T ss_dssp             HHHHHSSSSEETTSEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEC
T ss_pred             HHHhcCCCCccCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEE
Confidence            444444 23234679999999999999999999987776666777776

>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*

Probab=97.37  E-value=0.00012  Score=53.50  Aligned_cols=24  Identities=33%  Similarity=0.459  Sum_probs=21.9

Q ss_pred             EEEEEecCCCcHHHHHHHHHHHhc
Q 039455           51 FIGICGMGGIGKTTLAKVLYNTLK   74 (216)
Q Consensus        51 ~i~I~G~~GiGKTtL~~~~~~~~~   74 (216)
                      .|+|.|++|+||||+++.++..+.
T Consensus         2 ~I~i~G~~GsGKsT~~~~L~~~l~   25 (205)
T 2jaq_A            2 KIAIFGTVGAGKSTISAEISKKLG   25 (205)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHHHC
T ss_pred             EEEEECCCccCHHHHHHHHHHhcC
Confidence            589999999999999999998764

>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A

Probab=97.37  E-value=0.00014  Score=53.26  Aligned_cols=26  Identities=31%  Similarity=0.225  Sum_probs=23.2

Q ss_pred             CeeEEEEEecCCCcHHHHHHHHHHHh
Q 039455           48 DVRFIGICGMGGIGKTTLAKVLYNTL   73 (216)
Q Consensus        48 ~~~~i~I~G~~GiGKTtL~~~~~~~~   73 (216)
                      .+..|+|+|++|+||||+++.++..+
T Consensus        19 ~~~~I~l~G~~GsGKST~a~~La~~l   44 (201)
T 2cdn_A           19 SHMRVLLLGPPGAGKGTQAVKLAEKL   44 (201)
T ss_dssp             SCCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence            34589999999999999999999876

>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}

Probab=97.36  E-value=0.0017  Score=53.67  Aligned_cols=46  Identities=13%  Similarity=0.100  Sum_probs=32.2

Q ss_pred             HHHHHhcCCCCeeEEEEEecCCCcHHHHHHHHHHHhcC-CCCceEeec
Q 039455           38 MNGYLEAGLDDVRFIGICGMGGIGKTTLAKVLYNTLKD-QFEASSFLA   84 (216)
Q Consensus        38 l~~~l~~~~~~~~~i~I~G~~GiGKTtL~~~~~~~~~~-~~~~~~~~~   84 (216)
                      |...+ .+-..+..+.|.|++|+|||+|+..++..... .-..+.|++
T Consensus       190 LD~~l-gGl~~G~l~ii~G~pg~GKT~lal~ia~~~a~~~g~~vl~~s  236 (444)
T 2q6t_A          190 LDQLI-GTLGPGSLNIIAARPAMGKTAFALTIAQNAALKEGVGVGIYS  236 (444)
T ss_dssp             HHHHH-CCCCTTCEEEEEECTTSCHHHHHHHHHHHHHHTTCCCEEEEE
T ss_pred             hhhhc-CCcCCCcEEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEE
Confidence            33444 34445689999999999999999999986543 223455554

>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*

Probab=97.36  E-value=0.00074  Score=52.71  Aligned_cols=36  Identities=28%  Similarity=0.244  Sum_probs=28.4

Q ss_pred             CeeEEEEEecCCCcHHHHHHHHHHHhcCCCCceEee
Q 039455           48 DVRFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFL   83 (216)
Q Consensus        48 ~~~~i~I~G~~GiGKTtL~~~~~~~~~~~~~~~~~~   83 (216)
                      .+.+++++|++|+||||++..++..+......+.++
T Consensus        97 ~~~~i~i~g~~G~GKTT~~~~la~~~~~~~~~v~l~  132 (295)
T 1ls1_A           97 DRNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLV  132 (295)
T ss_dssp             SSEEEEEECCTTTTHHHHHHHHHHHHHHTTCCEEEE
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEe
Confidence            467999999999999999999998776543444444

>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10

Probab=97.36  E-value=0.00018  Score=51.41  Aligned_cols=28  Identities=21%  Similarity=0.228  Sum_probs=24.6

Q ss_pred             eeEEEEEecCCCcHHHHHHHHHHHhcCC
Q 039455           49 VRFIGICGMGGIGKTTLAKVLYNTLKDQ   76 (216)
Q Consensus        49 ~~~i~I~G~~GiGKTtL~~~~~~~~~~~   76 (216)
                      .+++.|.|++|+|||||+..++..+..+
T Consensus         4 ~~~i~i~G~sGsGKTTl~~~L~~~l~~~   31 (169)
T 1xjc_A            4 MNVWQVVGYKHSGKTTLMEKWVAAAVRE   31 (169)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHHHHHHT
T ss_pred             CEEEEEECCCCCCHHHHHHHHHHhhHhc
Confidence            4689999999999999999999877654

>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*

Probab=97.36  E-value=0.00016  Score=53.01  Aligned_cols=26  Identities=31%  Similarity=0.324  Sum_probs=23.0

Q ss_pred             CeeEEEEEecCCCcHHHHHHHHHHHh
Q 039455           48 DVRFIGICGMGGIGKTTLAKVLYNTL   73 (216)
Q Consensus        48 ~~~~i~I~G~~GiGKTtL~~~~~~~~   73 (216)
                      ....|+|+|++|+||||+++.++..+
T Consensus        14 ~~~~I~l~G~~GsGKsT~~~~L~~~~   39 (203)
T 1ukz_A           14 QVSVIFVLGGPGAGKGTQCEKLVKDY   39 (203)
T ss_dssp             TCEEEEEECSTTSSHHHHHHHHHHHS
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHHc
Confidence            34689999999999999999998764

>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*

Probab=97.34  E-value=0.00022  Score=58.69  Aligned_cols=50  Identities=22%  Similarity=0.224  Sum_probs=37.3

Q ss_pred             cccccchhHHHHHHHHHhcC------------CCCeeEEEEEecCCCcHHHHHHHHHHHhcC
Q 039455           26 DGLVGIASRMEKMNGYLEAG------------LDDVRFIGICGMGGIGKTTLAKVLYNTLKD   75 (216)
Q Consensus        26 ~~~vgR~~~~~~l~~~l~~~------------~~~~~~i~I~G~~GiGKTtL~~~~~~~~~~   75 (216)
                      .+.+|.+...+.+...+...            ......++++||+|+|||++++.++..+..
T Consensus        15 ~~IvGqe~ak~~l~~av~~~~~r~~~~~~~~~~~~~~~iLl~GppGtGKT~lar~lA~~l~~   76 (444)
T 1g41_A           15 QHIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKLANA   76 (444)
T ss_dssp             TTCCSCHHHHHHHHHHHHHHHHHHHSCTTTTTTCCCCCEEEECCTTSSHHHHHHHHHHHTTC
T ss_pred             HHhCCHHHHHHHHHHHHHHHHhhhccccccccccCCceEEEEcCCCCCHHHHHHHHHHHcCC
Confidence            45788888888776655211            112467999999999999999999987643

>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}

Probab=97.34  E-value=8.6e-05  Score=53.40  Aligned_cols=26  Identities=38%  Similarity=0.381  Sum_probs=18.9

Q ss_pred             eeEEEEEecCCCcHHHHHHHHHHHhc
Q 039455           49 VRFIGICGMGGIGKTTLAKVLYNTLK   74 (216)
Q Consensus        49 ~~~i~I~G~~GiGKTtL~~~~~~~~~   74 (216)
                      ...|+|+|++|+||||+++.++..+.
T Consensus         5 ~~~I~l~G~~GsGKST~a~~La~~l~   30 (183)
T 2vli_A            5 SPIIWINGPFGVGKTHTAHTLHERLP   30 (183)
T ss_dssp             CCEEEEECCC----CHHHHHHHHHST
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHhcC
Confidence            46899999999999999999987653

>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1

Probab=97.34  E-value=0.00017  Score=52.75  Aligned_cols=26  Identities=38%  Similarity=0.456  Sum_probs=23.0

Q ss_pred             CCeeEEEEEecCCCcHHHHHHHHHHH
Q 039455           47 DDVRFIGICGMGGIGKTTLAKVLYNT   72 (216)
Q Consensus        47 ~~~~~i~I~G~~GiGKTtL~~~~~~~   72 (216)
                      .+..+|+|+|++|+||||+++.++..
T Consensus         6 ~~~~~I~i~G~~GsGKST~~~~La~~   31 (203)
T 1uf9_A            6 KHPIIIGITGNIGSGKSTVAALLRSW   31 (203)
T ss_dssp             CCCEEEEEEECTTSCHHHHHHHHHHT
T ss_pred             cCceEEEEECCCCCCHHHHHHHHHHC
Confidence            34578999999999999999999875

>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*

Probab=97.34  E-value=0.00014  Score=54.08  Aligned_cols=26  Identities=27%  Similarity=0.226  Sum_probs=23.1

Q ss_pred             eeEEEEEecCCCcHHHHHHHHHHHhc
Q 039455           49 VRFIGICGMGGIGKTTLAKVLYNTLK   74 (216)
Q Consensus        49 ~~~i~I~G~~GiGKTtL~~~~~~~~~   74 (216)
                      ...|+|.|++|+||||+++.++..+.
T Consensus         4 ~~~I~l~G~~GsGKsT~a~~La~~l~   29 (220)
T 1aky_A            4 SIRMVLIGPPGAGKGTQAPNLQERFH   29 (220)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHHHHC
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHHcC
Confidence            46899999999999999999998763

>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*

Probab=97.34  E-value=0.00016  Score=52.24  Aligned_cols=25  Identities=20%  Similarity=0.214  Sum_probs=22.6

Q ss_pred             eeEEEEEecCCCcHHHHHHHHHHHh
Q 039455           49 VRFIGICGMGGIGKTTLAKVLYNTL   73 (216)
Q Consensus        49 ~~~i~I~G~~GiGKTtL~~~~~~~~   73 (216)
                      ...|+|+|++|+||||+++.++..+
T Consensus         6 ~~~I~l~G~~GsGKsT~~~~L~~~l   30 (194)
T 1qf9_A            6 PNVVFVLGGPGSGKGTQCANIVRDF   30 (194)
T ss_dssp             CEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHHh
Confidence            4689999999999999999998865

>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*

Probab=97.33  E-value=0.00016  Score=55.01  Aligned_cols=27  Identities=22%  Similarity=0.386  Sum_probs=23.6

Q ss_pred             CeeEEEEEecCCCcHHHHHHHHHHHhc
Q 039455           48 DVRFIGICGMGGIGKTTLAKVLYNTLK   74 (216)
Q Consensus        48 ~~~~i~I~G~~GiGKTtL~~~~~~~~~   74 (216)
                      ...+|+|+|++|+||||+++.++..+.
T Consensus        21 ~~~iI~I~G~~GSGKST~a~~L~~~lg   47 (252)
T 1uj2_A           21 EPFLIGVSGGTASGKSSVCAKIVQLLG   47 (252)
T ss_dssp             CCEEEEEECSTTSSHHHHHHHHHHHTT
T ss_pred             CcEEEEEECCCCCCHHHHHHHHHHHhh
Confidence            456899999999999999999988653

>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}

Probab=97.33  E-value=0.00015  Score=53.76  Aligned_cols=23  Identities=30%  Similarity=0.406  Sum_probs=20.8

Q ss_pred             EEEEEecCCCcHHHHHHHHHHHh
Q 039455           51 FIGICGMGGIGKTTLAKVLYNTL   73 (216)
Q Consensus        51 ~i~I~G~~GiGKTtL~~~~~~~~   73 (216)
                      .|+|+|++|+||||+++.++..+
T Consensus         2 ~I~l~G~~GsGKsT~a~~L~~~~   24 (216)
T 3fb4_A            2 NIVLMGLPGAGKGTQAEQIIEKY   24 (216)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHh
Confidence            47899999999999999998765

>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}

Probab=97.32  E-value=0.00053  Score=54.50  Aligned_cols=38  Identities=13%  Similarity=0.135  Sum_probs=29.1

Q ss_pred             CCeeEEEEEecCCCcHHHHHHHHHHHhcCCCCceEeec
Q 039455           47 DDVRFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLA   84 (216)
Q Consensus        47 ~~~~~i~I~G~~GiGKTtL~~~~~~~~~~~~~~~~~~~   84 (216)
                      ..+..++|.|++|+|||||+..++......-..+.|++
T Consensus        44 ~~G~LiiIaG~pG~GKTt~al~ia~~~a~~g~~Vl~fS   81 (338)
T 4a1f_A           44 NKGSLVIIGARPSMGKTSLMMNMVLSALNDDRGVAVFS   81 (338)
T ss_dssp             CTTCEEEEEECTTSCHHHHHHHHHHHHHHTTCEEEEEE
T ss_pred             CCCcEEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEe
Confidence            45579999999999999999999886544334455553

>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}

Probab=97.31  E-value=0.0012  Score=54.27  Aligned_cols=35  Identities=20%  Similarity=0.209  Sum_probs=27.9

Q ss_pred             CeeEEEEEecCCCcHHHHHHHHHHHhcCCCCceEe
Q 039455           48 DVRFIGICGMGGIGKTTLAKVLYNTLKDQFEASSF   82 (216)
Q Consensus        48 ~~~~i~I~G~~GiGKTtL~~~~~~~~~~~~~~~~~   82 (216)
                      .+.+|.++|++|+||||++..++..+..+...+..
T Consensus        99 ~p~vIlivG~~G~GKTTt~~kLA~~l~~~G~kVll  133 (443)
T 3dm5_A           99 KPTILLMVGIQGSGKTTTVAKLARYFQKRGYKVGV  133 (443)
T ss_dssp             SSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEE
T ss_pred             CCeEEEEECcCCCCHHHHHHHHHHHHHHCCCeEEE
Confidence            36899999999999999999999877665333433

>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*

Probab=97.31  E-value=0.00015  Score=53.08  Aligned_cols=25  Identities=24%  Similarity=0.286  Sum_probs=22.8

Q ss_pred             eeEEEEEecCCCcHHHHHHHHHHHh
Q 039455           49 VRFIGICGMGGIGKTTLAKVLYNTL   73 (216)
Q Consensus        49 ~~~i~I~G~~GiGKTtL~~~~~~~~   73 (216)
                      +..|+|.|+.|+||||+++.++..+
T Consensus         4 ~~~I~l~G~~GsGKsT~~~~L~~~l   28 (204)
T 2v54_A            4 GALIVFEGLDKSGKTTQCMNIMESI   28 (204)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHHTS
T ss_pred             CcEEEEEcCCCCCHHHHHHHHHHHH
Confidence            4689999999999999999999876

>2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19

Probab=97.30  E-value=0.0082  Score=45.12  Aligned_cols=40  Identities=23%  Similarity=0.115  Sum_probs=28.6

Q ss_pred             ccchhHHHHHHHHHhcCCCCeeEEEEEecCCCcHHHHHHHHHHHh
Q 039455           29 VGIASRMEKMNGYLEAGLDDVRFIGICGMGGIGKTTLAKVLYNTL   73 (216)
Q Consensus        29 vgR~~~~~~l~~~l~~~~~~~~~i~I~G~~GiGKTtL~~~~~~~~   73 (216)
                      --|..+.+.+..++..     ..++|+|+.|+|||.++..++...
T Consensus        93 ~l~~~Q~~ai~~~~~~-----~~~ll~~~tG~GKT~~a~~~~~~~  132 (237)
T 2fz4_A           93 SLRDYQEKALERWLVD-----KRGCIVLPTGSGKTHVAMAAINEL  132 (237)
T ss_dssp             CCCHHHHHHHHHHTTT-----SEEEEEESSSTTHHHHHHHHHHHS
T ss_pred             CcCHHHHHHHHHHHhC-----CCEEEEeCCCCCHHHHHHHHHHHc
Confidence            4455555555555543     238899999999999998888765

>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}

Probab=97.30  E-value=0.00016  Score=55.71  Aligned_cols=23  Identities=35%  Similarity=0.644  Sum_probs=21.0

Q ss_pred             EEEEEecCCCcHHHHHHHHHHHh
Q 039455           51 FIGICGMGGIGKTTLAKVLYNTL   73 (216)
Q Consensus        51 ~i~I~G~~GiGKTtL~~~~~~~~   73 (216)
                      .++|+|++|+|||||++.+++..
T Consensus         4 ~v~lvG~nGaGKSTLln~L~g~~   26 (270)
T 3sop_A            4 NIMVVGQSGLGKSTLVNTLFKSQ   26 (270)
T ss_dssp             EEEEEESSSSSHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Confidence            68999999999999999999854

>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*

Probab=97.29  E-value=0.00015  Score=51.56  Aligned_cols=24  Identities=33%  Similarity=0.394  Sum_probs=21.8

Q ss_pred             eEEEEEecCCCcHHHHHHHHHHHh
Q 039455           50 RFIGICGMGGIGKTTLAKVLYNTL   73 (216)
Q Consensus        50 ~~i~I~G~~GiGKTtL~~~~~~~~   73 (216)
                      ..|+|+|++|+||||+++.++..+
T Consensus         3 ~~I~l~G~~GsGKsT~a~~La~~l   26 (173)
T 1e6c_A            3 EPIFMVGARGCGMTTVGRELARAL   26 (173)
T ss_dssp             CCEEEESCTTSSHHHHHHHHHHHH
T ss_pred             ceEEEECCCCCCHHHHHHHHHHHh
Confidence            468999999999999999999875

>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*

Probab=97.29  E-value=0.00016  Score=53.61  Aligned_cols=23  Identities=22%  Similarity=0.348  Sum_probs=20.6

Q ss_pred             EEEEEecCCCcHHHHHHHHHHHh
Q 039455           51 FIGICGMGGIGKTTLAKVLYNTL   73 (216)
Q Consensus        51 ~i~I~G~~GiGKTtL~~~~~~~~   73 (216)
                      .|+|+|++|+||||+++.++..+
T Consensus         2 ~I~l~G~~GsGKsT~a~~L~~~~   24 (216)
T 3dl0_A            2 NLVLMGLPGAGKGTQGERIVEKY   24 (216)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHHHHh
Confidence            47899999999999999998764

>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*

Probab=97.29  E-value=0.00016  Score=59.16  Aligned_cols=25  Identities=24%  Similarity=0.400  Sum_probs=22.4

Q ss_pred             CeeEEEEEecCCCcHHHHHHHHHHH
Q 039455           48 DVRFIGICGMGGIGKTTLAKVLYNT   72 (216)
Q Consensus        48 ~~~~i~I~G~~GiGKTtL~~~~~~~   72 (216)
                      ....++|.|++|+|||||++.+.+.
T Consensus        68 ~~~~valvG~nGaGKSTLln~L~Gl   92 (413)
T 1tq4_A           68 SVLNVAVTGETGSGKSSFINTLRGI   92 (413)
T ss_dssp             CCEEEEEEECTTSSHHHHHHHHHTC
T ss_pred             CCeEEEEECCCCCcHHHHHHHHhCC
Confidence            3469999999999999999999984

>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*

Probab=97.29  E-value=0.0002  Score=52.93  Aligned_cols=27  Identities=33%  Similarity=0.300  Sum_probs=24.1

Q ss_pred             CeeEEEEEecCCCcHHHHHHHHHHHhc
Q 039455           48 DVRFIGICGMGGIGKTTLAKVLYNTLK   74 (216)
Q Consensus        48 ~~~~i~I~G~~GiGKTtL~~~~~~~~~   74 (216)
                      .+..|+|.|++|+||||+++.++..+.
T Consensus        24 ~~~~i~~~G~~GsGKsT~~~~l~~~l~   50 (211)
T 1m7g_A           24 RGLTIWLTGLSASGKSTLAVELEHQLV   50 (211)
T ss_dssp             SCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHHHhc
Confidence            457999999999999999999998764

>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}

Probab=97.29  E-value=0.00018  Score=51.03  Aligned_cols=24  Identities=29%  Similarity=0.364  Sum_probs=21.6

Q ss_pred             EEEEEecCCCcHHHHHHHHHHHhc
Q 039455           51 FIGICGMGGIGKTTLAKVLYNTLK   74 (216)
Q Consensus        51 ~i~I~G~~GiGKTtL~~~~~~~~~   74 (216)
                      .|+|+|++|+||||+++.++..+.
T Consensus         2 ~I~l~G~~GsGKsT~a~~L~~~l~   25 (168)
T 2pt5_A            2 RIYLIGFMCSGKSTVGSLLSRSLN   25 (168)
T ss_dssp             EEEEESCTTSCHHHHHHHHHHHHT
T ss_pred             eEEEECCCCCCHHHHHHHHHHHhC
Confidence            589999999999999999998653

>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A

Probab=97.29  E-value=0.0017  Score=64.04  Aligned_cols=24  Identities=33%  Similarity=0.426  Sum_probs=21.0

Q ss_pred             eEEEEEecCCCcHHHHHHHHHHHh
Q 039455           50 RFIGICGMGGIGKTTLAKVLYNTL   73 (216)
Q Consensus        50 ~~i~I~G~~GiGKTtL~~~~~~~~   73 (216)
                      ..+.++||+|+|||++|+.+....
T Consensus      1268 ~~vLL~GPpGtGKT~la~~~l~~~ 1291 (2695)
T 4akg_A         1268 RGIILCGPPGSGKTMIMNNALRNS 1291 (2695)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHSC
T ss_pred             CeEEEECCCCCCHHHHHHHHHhcC
Confidence            689999999999999998777643

>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}

Probab=97.28  E-value=0.00018  Score=52.17  Aligned_cols=24  Identities=54%  Similarity=0.744  Sum_probs=21.9

Q ss_pred             EEEEEecCCCcHHHHHHHHHHHhc
Q 039455           51 FIGICGMGGIGKTTLAKVLYNTLK   74 (216)
Q Consensus        51 ~i~I~G~~GiGKTtL~~~~~~~~~   74 (216)
                      .|+|+|++|+||||+++.++..+.
T Consensus         2 ~I~l~G~~GsGKsT~~~~L~~~l~   25 (195)
T 2pbr_A            2 LIAFEGIDGSGKTTQAKKLYEYLK   25 (195)
T ss_dssp             EEEEECSTTSCHHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHH
Confidence            589999999999999999998764

>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*

Probab=97.28  E-value=0.00031  Score=56.05  Aligned_cols=43  Identities=19%  Similarity=0.223  Sum_probs=30.3

Q ss_pred             hhHHHHHHHHHhcC--CCCeeEEEEEecCCCcHHHHHHHHHHHhc
Q 039455           32 ASRMEKMNGYLEAG--LDDVRFIGICGMGGIGKTTLAKVLYNTLK   74 (216)
Q Consensus        32 ~~~~~~l~~~l~~~--~~~~~~i~I~G~~GiGKTtL~~~~~~~~~   74 (216)
                      +.-.+.+...+...  ......++|+|++|+||||+++.++..+.
T Consensus         5 ~~L~~~il~~l~~~i~~g~~~~i~l~G~~G~GKTTl~~~la~~l~   49 (359)
T 2ga8_A            5 HKLADDVLQLLDNRIEDNYRVCVILVGSPGSGKSTIAEELCQIIN   49 (359)
T ss_dssp             HHHHHHHHHHHHHTTTTCSCEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhccCCeeEEEEECCCCCcHHHHHHHHHHHhC
Confidence            44445555555422  23456799999999999999999988543

>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*

Probab=97.28  E-value=0.00016  Score=64.16  Aligned_cols=61  Identities=18%  Similarity=0.169  Sum_probs=40.6

Q ss_pred             hHHHHHHHhCCc---eEEEEEeCCCC------HHHHHHhhcCCCCCCCCcEEEEEeCCchhhhccCCcceEEec
Q 039455          120 GINLIRWRLCRK---RVLVVLDDVDQ------LEQLQALAGNHDWFGFGSRIIITTRDEHVLKGHGVTNIYKVR  184 (216)
Q Consensus       120 ~~~~l~~~l~~~---~~llvlDd~~~------~~~~~~l~~~~~~~~~~~~il~tsr~~~~~~~~~~~~~~~l~  184 (216)
                      ..-.+...+..+   +-++|||+.-.      ...+..++..+.  ..+..||++||+.++. .. ++..+.+.
T Consensus       737 QRv~LAraL~~~p~~p~lLILDEPTsGLD~~~~~~l~~lL~~L~--~~G~tVIvisHdl~~i-~~-aDrii~L~  806 (842)
T 2vf7_A          737 QRIKLATELRRSGRGGTVYVLDEPTTGLHPADVERLQRQLVKLV--DAGNTVIAVEHKMQVV-AA-SDWVLDIG  806 (842)
T ss_dssp             HHHHHHHTTSSCCSSCEEEEEECTTTTCCHHHHHHHHHHHHHHH--HTTCEEEEECCCHHHH-TT-CSEEEEEC
T ss_pred             HHHHHHHHHHhCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHH--hCCCEEEEEcCCHHHH-Hh-CCEEEEEC
Confidence            344577777764   69999998732      233444443332  3478899999999887 33 77788884

>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*

Probab=97.27  E-value=0.0007  Score=54.27  Aligned_cols=40  Identities=25%  Similarity=0.340  Sum_probs=29.6

Q ss_pred             HHHHHHhcCCCCeeEEEEEecCCCcHHHHHHHHHHHhcCC
Q 039455           37 KMNGYLEAGLDDVRFIGICGMGGIGKTTLAKVLYNTLKDQ   76 (216)
Q Consensus        37 ~l~~~l~~~~~~~~~i~I~G~~GiGKTtL~~~~~~~~~~~   76 (216)
                      .+...+........+|+|+|.+|+|||||+..++..+...
T Consensus        67 ~~~~~~~~~~~~~~~I~i~G~~G~GKSTl~~~L~~~l~~~  106 (355)
T 3p32_A           67 QLLLRLLPDSGNAHRVGITGVPGVGKSTAIEALGMHLIER  106 (355)
T ss_dssp             HHHHHHGGGCCCSEEEEEECCTTSSHHHHHHHHHHHHHTT
T ss_pred             HHHHHhHhhcCCceEEEEECCCCCCHHHHHHHHHHHHHhC
Confidence            3444443334566899999999999999999998866443

>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*

Probab=97.26  E-value=0.00021  Score=54.78  Aligned_cols=26  Identities=35%  Similarity=0.599  Sum_probs=23.3

Q ss_pred             eeEEEEEecCCCcHHHHHHHHHHHhc
Q 039455           49 VRFIGICGMGGIGKTTLAKVLYNTLK   74 (216)
Q Consensus        49 ~~~i~I~G~~GiGKTtL~~~~~~~~~   74 (216)
                      ...|+|+|++|+||||+++.++..+.
T Consensus         4 ~~lIvl~G~pGSGKSTla~~La~~L~   29 (260)
T 3a4m_A            4 IMLIILTGLPGVGKSTFSKNLAKILS   29 (260)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred             CEEEEEEcCCCCCHHHHHHHHHHHHH
Confidence            46899999999999999999998754

>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}

Probab=97.26  E-value=0.00024  Score=60.24  Aligned_cols=49  Identities=18%  Similarity=0.224  Sum_probs=33.5

Q ss_pred             cccchhHHHHHHHHHhcCCCCeeEEEEEecCCCcHHHHHHHHHHHhcCC
Q 039455           28 LVGIASRMEKMNGYLEAGLDDVRFIGICGMGGIGKTTLAKVLYNTLKDQ   76 (216)
Q Consensus        28 ~vgR~~~~~~l~~~l~~~~~~~~~i~I~G~~GiGKTtL~~~~~~~~~~~   76 (216)
                      .+.+....+.+..........+.+++|+|++|+|||||++.++..+...
T Consensus       348 ~f~~peV~~vLR~~~~~~~~~G~iI~LiG~sGSGKSTLar~La~~L~~~  396 (552)
T 3cr8_A          348 WYSFPEVLAELHRQTPPRERQGFTVFFTGLSGAGKSTLARALAARLMEM  396 (552)
T ss_dssp             TTSCHHHHHHHHHHSCCGGGSCEEEEEEESSCHHHHHHHHHHHHHHHTT
T ss_pred             cccccchhhhhhhhcccccccceEEEEECCCCChHHHHHHHHHHhhccc
Confidence            3444444444444332122345899999999999999999999987643

>1jr3_D DNA polymerase III, delta subunit; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1jqj_C* 1xxh_A* 1xxi_A* 3glf_A* 3glg_A* 3glh_A* 3gli_A*

Probab=97.26  E-value=0.0017  Score=51.52  Aligned_cols=141  Identities=7%  Similarity=-0.050  Sum_probs=78.4

Q ss_pred             CeeEEEEEecCCCcHHHHHHHHHHHhcC-CCCceEeeccccccccccCchHHHHHHHHHHHhhccccccchhhhHHHHHH
Q 039455           48 DVRFIGICGMGGIGKTTLAKVLYNTLKD-QFEASSFLANVREVSVTRGLVPLQEQLLSEVLMERNLIIWDVHKGINLIRW  126 (216)
Q Consensus        48 ~~~~i~I~G~~GiGKTtL~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~  126 (216)
                      -.+++.++|+.|.||++.++.++..+.. .+.....+. ...   ..++.    ++...+.                 ..
T Consensus        17 ~~~~yl~~G~e~~~~~~~~~~l~~~~~~~~~~~~~~~~-~~~---~~~~~----~l~~~~~-----------------~~   71 (343)
T 1jr3_D           17 LRAAYLLLGNDPLLLQESQDAVRQVAAAQGFEEHHTFS-IDP---NTDWN----AIFSLCQ-----------------AM   71 (343)
T ss_dssp             CCSEEEEEESCHHHHHHHHHHHHHHHHHHTCCEEEEEE-CCT---TCCHH----HHHHHHH-----------------HH
T ss_pred             CCcEEEEECCcHHHHHHHHHHHHHHHHhCCCCeeEEEE-ecC---CCCHH----HHHHHhc-----------------Cc
Confidence            4579999999999999999999886542 222111111 111   11221    2221110                 11


Q ss_pred             HhCCceEEEEEeCCCC-H--HHHHHhhcCCCCCCCCcEEEEEeCCc-------hhhhcc-CCcceEEecCCChHHHHHHH
Q 039455          127 RLCRKRVLVVLDDVDQ-L--EQLQALAGNHDWFGFGSRIIITTRDE-------HVLKGH-GVTNIYKVRGLDYVEALQLF  195 (216)
Q Consensus       127 ~l~~~~~llvlDd~~~-~--~~~~~l~~~~~~~~~~~~il~tsr~~-------~~~~~~-~~~~~~~l~~l~~~~~~~ll  195 (216)
                      .+.+++-++|+|+++. .  +..+.+...+..-.+++.+|+++...       .+...+ .....+++.+++.++....+
T Consensus        72 plf~~~kvvii~~~~~kl~~~~~~aLl~~le~p~~~~~~il~~~~~~~~~~~~k~~~~i~sr~~~~~~~~l~~~~l~~~l  151 (343)
T 1jr3_D           72 SLFASRQTLLLLLPENGPNAAINEQLLTLTGLLHDDLLLIVRGNKLSKAQENAAWFTALANRSVQVTCQTPEQAQLPRWV  151 (343)
T ss_dssp             HHCCSCEEEEEECCSSCCCTTHHHHHHHHHTTCBTTEEEEEEESCCCTTTTTSHHHHHHTTTCEEEEECCCCTTHHHHHH
T ss_pred             CCccCCeEEEEECCCCCCChHHHHHHHHHHhcCCCCeEEEEEcCCCChhhHhhHHHHHHHhCceEEEeeCCCHHHHHHHH
Confidence            2335566889999865 3  33444443333223566666666432       223332 23478999999999999888


Q ss_pred             hhhhcCCC--CCchhHhhhc
Q 039455          196 HLKVSKGK--QPTDDRVELS  213 (216)
Q Consensus       196 ~~~~~~~~--~~~~~~~~l~  213 (216)
                      .+.+-..+  .+++..+.|+
T Consensus       152 ~~~~~~~g~~i~~~a~~~l~  171 (343)
T 1jr3_D          152 AARAKQLNLELDDAANQVLC  171 (343)
T ss_dssp             HHHHHHTTCEECHHHHHHHH
T ss_pred             HHHHHHcCCCCCHHHHHHHH
Confidence            87664333  3334444443

>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*

Probab=97.26  E-value=0.00018  Score=53.82  Aligned_cols=25  Identities=24%  Similarity=0.266  Sum_probs=22.5

Q ss_pred             eeEEEEEecCCCcHHHHHHHHHHHh
Q 039455           49 VRFIGICGMGGIGKTTLAKVLYNTL   73 (216)
Q Consensus        49 ~~~i~I~G~~GiGKTtL~~~~~~~~   73 (216)
                      ...|+|.|++|+||||+++.++..+
T Consensus         7 ~~~I~l~G~~GsGKsT~a~~La~~l   31 (227)
T 1zd8_A            7 LLRAVIMGAPGSGKGTVSSRITTHF   31 (227)
T ss_dssp             CCEEEEEECTTSSHHHHHHHHHHHS
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHHc
Confidence            3689999999999999999999865

>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1

Probab=97.26  E-value=0.00017  Score=53.76  Aligned_cols=26  Identities=19%  Similarity=0.198  Sum_probs=23.1

Q ss_pred             eeEEEEEecCCCcHHHHHHHHHHHhc
Q 039455           49 VRFIGICGMGGIGKTTLAKVLYNTLK   74 (216)
Q Consensus        49 ~~~i~I~G~~GiGKTtL~~~~~~~~~   74 (216)
                      ...|+|.|++|+||||+++.++..+.
T Consensus         5 ~~~I~l~G~~GsGKsT~~~~La~~l~   30 (222)
T 1zak_A            5 PLKVMISGAPASGKGTQCELIKTKYQ   30 (222)
T ss_dssp             SCCEEEEESTTSSHHHHHHHHHHHHC
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHhC
Confidence            35799999999999999999998764

>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A

Probab=97.26  E-value=0.00044  Score=55.78  Aligned_cols=30  Identities=17%  Similarity=0.018  Sum_probs=25.4

Q ss_pred             CCeeEEEEEecCCCcHHHHHHHHHHHhcCC
Q 039455           47 DDVRFIGICGMGGIGKTTLAKVLYNTLKDQ   76 (216)
Q Consensus        47 ~~~~~i~I~G~~GiGKTtL~~~~~~~~~~~   76 (216)
                      ..+..++|+|++|+|||||++.++..+.+.
T Consensus       172 ~rGQr~~IvG~sG~GKTtLl~~Iar~i~~~  201 (422)
T 3ice_A          172 GRGQRGLIVAPPKAGKTMLLQNIAQSIAYN  201 (422)
T ss_dssp             BTTCEEEEECCSSSSHHHHHHHHHHHHHHH
T ss_pred             cCCcEEEEecCCCCChhHHHHHHHHHHhhc
Confidence            346799999999999999999998876543

>1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1 b.49.1.1 c.37.1.11

Probab=97.24  E-value=0.00099  Score=55.11  Aligned_cols=27  Identities=33%  Similarity=0.516  Sum_probs=23.1

Q ss_pred             eeEEEEEecCCCcHHHHHHHHHHHhcC
Q 039455           49 VRFIGICGMGGIGKTTLAKVLYNTLKD   75 (216)
Q Consensus        49 ~~~i~I~G~~GiGKTtL~~~~~~~~~~   75 (216)
                      +..++|+|++|+|||||+..++.....
T Consensus       151 Gq~~~i~G~sGvGKTtL~~~l~~~~~~  177 (473)
T 1sky_E          151 GGKIGLFGGAGVGKTVLIQELIHNIAQ  177 (473)
T ss_dssp             TCEEEEECCSSSCHHHHHHHHHHHHHH
T ss_pred             CCEEEEECCCCCCccHHHHHHHhhhhh
Confidence            357899999999999999999886543

>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}

Probab=97.24  E-value=0.00011  Score=52.66  Aligned_cols=27  Identities=30%  Similarity=0.480  Sum_probs=23.8

Q ss_pred             eEEEEEecCCCcHHHHHHHHHHHhcCC
Q 039455           50 RFIGICGMGGIGKTTLAKVLYNTLKDQ   76 (216)
Q Consensus        50 ~~i~I~G~~GiGKTtL~~~~~~~~~~~   76 (216)
                      +.++|+|++|+|||||++.++..+...
T Consensus         3 ~~v~IvG~SGsGKSTL~~~L~~~~~~~   29 (171)
T 2f1r_A            3 LILSIVGTSDSGKTTLITRMMPILRER   29 (171)
T ss_dssp             CEEEEEESCHHHHHHHHHHHHHHHHHT
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHhhhc
Confidence            579999999999999999999877643

>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*

Probab=97.21  E-value=0.00021  Score=51.39  Aligned_cols=24  Identities=29%  Similarity=0.562  Sum_probs=21.4

Q ss_pred             eEEEEEecCCCcHHHHHHHHHHHh
Q 039455           50 RFIGICGMGGIGKTTLAKVLYNTL   73 (216)
Q Consensus        50 ~~i~I~G~~GiGKTtL~~~~~~~~   73 (216)
                      ...+|+|++|+|||||++.+..-+
T Consensus        27 g~~~i~G~NGsGKStll~ai~~~l   50 (182)
T 3kta_A           27 GFTAIVGANGSGKSNIGDAILFVL   50 (182)
T ss_dssp             SEEEEEECTTSSHHHHHHHHHHHT
T ss_pred             CcEEEECCCCCCHHHHHHHHHHHH
Confidence            488999999999999999998754

>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9

Probab=97.21  E-value=0.0079  Score=49.46  Aligned_cols=44  Identities=18%  Similarity=0.220  Sum_probs=32.0

Q ss_pred             hHHHHHHHHHhcC-------CCCeeEEEEEecCCCcHHHHHHHHHHHhcCC
Q 039455           33 SRMEKMNGYLEAG-------LDDVRFIGICGMGGIGKTTLAKVLYNTLKDQ   76 (216)
Q Consensus        33 ~~~~~l~~~l~~~-------~~~~~~i~I~G~~GiGKTtL~~~~~~~~~~~   76 (216)
                      ...+++.+++...       .....+|+++|.+|+||||++..++..+...
T Consensus        77 ~~~~~l~~~l~~~~~~~~~~~~~~~vI~ivG~~GvGKTT~a~~LA~~l~~~  127 (433)
T 2xxa_A           77 IVRNELVAAMGEENQTLNLAAQPPAVVLMAGLQGAGKTTSVGKLGKFLREK  127 (433)
T ss_dssp             HHHHHHHHHHCSSSCCCCCCSSSSEEEEEECSTTSSHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHhccccccccccCCCCeEEEEECCCCCCHHHHHHHHHHHHHHh
Confidence            3445566666432       1235799999999999999999999876654

>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}

Probab=97.20  E-value=0.00018  Score=54.84  Aligned_cols=26  Identities=38%  Similarity=0.524  Sum_probs=23.3

Q ss_pred             eeEEEEEecCCCcHHHHHHHHHHHhc
Q 039455           49 VRFIGICGMGGIGKTTLAKVLYNTLK   74 (216)
Q Consensus        49 ~~~i~I~G~~GiGKTtL~~~~~~~~~   74 (216)
                      +..|+|+|++|+||||+++.++..+.
T Consensus        48 g~~i~l~G~~GsGKSTl~~~La~~lg   73 (250)
T 3nwj_A           48 GRSMYLVGMMGSGKTTVGKIMARSLG   73 (250)
T ss_dssp             TCCEEEECSTTSCHHHHHHHHHHHHT
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHhcC
Confidence            46899999999999999999998653

>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima}

Probab=97.20  E-value=0.0011  Score=59.45  Aligned_cols=64  Identities=17%  Similarity=0.242  Sum_probs=41.5

Q ss_pred             hhhHHHHHHHhCCc---eEEEEEeCCCC------HHHHHHhhcCCCCCCCCcEEEEEeCCchhhhccCCcceEEecC
Q 039455          118 HKGINLIRWRLCRK---RVLVVLDDVDQ------LEQLQALAGNHDWFGFGSRIIITTRDEHVLKGHGVTNIYKVRG  185 (216)
Q Consensus       118 ~~~~~~l~~~l~~~---~~llvlDd~~~------~~~~~~l~~~~~~~~~~~~il~tsr~~~~~~~~~~~~~~~l~~  185 (216)
                      +...-.+...+..+   +-++|||+.-+      ...+..++..+.  ..|..||+++|+.++...  ++..+.+.|
T Consensus       810 ErQRV~LAraL~~~p~~p~LLILDEPTsGLD~~~~~~L~~lL~~L~--~~G~TVIvI~HdL~~i~~--ADrIivLgp  882 (916)
T 3pih_A          810 EAQRIKLASELRKRDTGRTLYILDEPTVGLHFEDVRKLVEVLHRLV--DRGNTVIVIEHNLDVIKN--ADHIIDLGP  882 (916)
T ss_dssp             HHHHHHHHHHHTSCCCSSEEEEEESTTTTCCHHHHHHHHHHHHHHH--HTTCEEEEECCCHHHHTT--CSEEEEEES
T ss_pred             HHHHHHHHHHHhhCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHH--hcCCEEEEEeCCHHHHHh--CCEEEEecC
Confidence            34444677777654   57999998732      233334443332  247789999999987654  678888844

>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A

Probab=97.20  E-value=0.00028  Score=56.58  Aligned_cols=49  Identities=24%  Similarity=0.291  Sum_probs=35.9

Q ss_pred             HHHHHHHh-cCCCCeeEEEEEecCCCcHHHHHHHHHHHhcCCCCceEeec
Q 039455           36 EKMNGYLE-AGLDDVRFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLA   84 (216)
Q Consensus        36 ~~l~~~l~-~~~~~~~~i~I~G~~GiGKTtL~~~~~~~~~~~~~~~~~~~   84 (216)
                      ..|...|. .+-+.+.++.|.|++|+|||||+..++......-..+.|++
T Consensus        49 ~~LD~~Lg~GGl~~G~ii~I~G~pGsGKTtLal~la~~~~~~g~~vlyid   98 (356)
T 1u94_A           49 LSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFID   98 (356)
T ss_dssp             HHHHHHTSSSSEETTSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred             HHHHHHhccCCccCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEe
Confidence            34555554 34345679999999999999999999986654445677776

>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*

Probab=97.19  E-value=0.00013  Score=53.81  Aligned_cols=24  Identities=38%  Similarity=0.627  Sum_probs=22.0

Q ss_pred             EEEEEecCCCcHHHHHHHHHHHhc
Q 039455           51 FIGICGMGGIGKTTLAKVLYNTLK   74 (216)
Q Consensus        51 ~i~I~G~~GiGKTtL~~~~~~~~~   74 (216)
                      .|+|.|++|+||||+++.++..+.
T Consensus         2 ~I~i~G~~GsGKsTl~~~L~~~l~   25 (214)
T 1gtv_A            2 LIAIEGVDGAGKRTLVEKLSGAFR   25 (214)
T ss_dssp             EEEEEEEEEEEHHHHHHHHHHHHH
T ss_pred             EEEEEcCCCCCHHHHHHHHHHHHH
Confidence            689999999999999999998764

>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}

Probab=97.17  E-value=0.00027  Score=51.61  Aligned_cols=25  Identities=36%  Similarity=0.567  Sum_probs=22.4

Q ss_pred             eeEEEEEecCCCcHHHHHHHHHHHh
Q 039455           49 VRFIGICGMGGIGKTTLAKVLYNTL   73 (216)
Q Consensus        49 ~~~i~I~G~~GiGKTtL~~~~~~~~   73 (216)
                      -.+|+|+|+.|+||||+++.++..+
T Consensus        12 ~~iIgltG~~GSGKSTva~~L~~~l   36 (192)
T 2grj_A           12 HMVIGVTGKIGTGKSTVCEILKNKY   36 (192)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             ceEEEEECCCCCCHHHHHHHHHHhc
Confidence            4689999999999999999998763

>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A

Probab=97.17  E-value=0.00038  Score=49.99  Aligned_cols=27  Identities=33%  Similarity=0.469  Sum_probs=23.7

Q ss_pred             eeEEEEEecCCCcHHHHHHHHHHHhcC
Q 039455           49 VRFIGICGMGGIGKTTLAKVLYNTLKD   75 (216)
Q Consensus        49 ~~~i~I~G~~GiGKTtL~~~~~~~~~~   75 (216)
                      .+.++|+|++|+|||||++.+...+..
T Consensus         6 ~~~i~i~G~sGsGKTTl~~~l~~~l~~   32 (174)
T 1np6_A            6 IPLLAFAAWSGTGKTTLLKKLIPALCA   32 (174)
T ss_dssp             CCEEEEECCTTSCHHHHHHHHHHHHHH
T ss_pred             ceEEEEEeCCCCCHHHHHHHHHHhccc
Confidence            478999999999999999999987653

>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A

Probab=97.16  E-value=0.00032  Score=52.06  Aligned_cols=23  Identities=26%  Similarity=0.398  Sum_probs=21.1

Q ss_pred             eeEEEEEecCCCcHHHHHHHHHH
Q 039455           49 VRFIGICGMGGIGKTTLAKVLYN   71 (216)
Q Consensus        49 ~~~i~I~G~~GiGKTtL~~~~~~   71 (216)
                      ...|+|+|++|+||||+++.++.
T Consensus         4 ~~~I~i~G~~GSGKST~~~~L~~   26 (218)
T 1vht_A            4 RYIVALTGGIGSGKSTVANAFAD   26 (218)
T ss_dssp             CEEEEEECCTTSCHHHHHHHHHH
T ss_pred             ceEEEEECCCCCCHHHHHHHHHH
Confidence            46899999999999999999976

>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}

Probab=97.16  E-value=0.00024  Score=57.14  Aligned_cols=113  Identities=19%  Similarity=0.143  Sum_probs=56.0

Q ss_pred             eeEEEEEecCCCcHHHHHHHHHHHhcCCCCceEeeccccccccccCchHHHHHHHHHHHhhccc-cccchhhhHHHHHHH
Q 039455           49 VRFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLANVREVSVTRGLVPLQEQLLSEVLMERNL-IIWDVHKGINLIRWR  127 (216)
Q Consensus        49 ~~~i~I~G~~GiGKTtL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-~~~~~~~~~~~l~~~  127 (216)
                      +..++|+|++|+|||||++.++..+... ...+.+......... ...... .+.   ...... ...........+...
T Consensus       175 G~~i~ivG~sGsGKSTll~~l~~~~~~~-~g~I~ie~~~e~~~~-~~~~~v-~~v---~~q~~~~~~~~~~t~~~~i~~~  248 (361)
T 2gza_A          175 ERVIVVAGETGSGKTTLMKALMQEIPFD-QRLITIEDVPELFLP-DHPNHV-HLF---YPSEAKEEENAPVTAATLLRSC  248 (361)
T ss_dssp             TCCEEEEESSSSCHHHHHHHHHTTSCTT-SCEEEEESSSCCCCT-TCSSEE-EEE---CC----------CCHHHHHHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHHhcCCCC-ceEEEECCccccCcc-ccCCEE-EEe---ecCccccccccccCHHHHHHHH
Confidence            4799999999999999999999876543 333333222111100 000000 000   000000 000111234556666


Q ss_pred             hCCceEEEEEeCCCCHHHHHHhhcCCCCCCCCcEEEEEeCCch
Q 039455          128 LCRKRVLVVLDDVDQLEQLQALAGNHDWFGFGSRIIITTRDEH  170 (216)
Q Consensus       128 l~~~~~llvlDd~~~~~~~~~l~~~~~~~~~~~~il~tsr~~~  170 (216)
                      +...+-.+++|++...+.++.+ ..++. + ...++.|+|...
T Consensus       249 l~~~pd~~l~~e~r~~~~~~~l-~~l~~-g-~~~~l~t~H~~~  288 (361)
T 2gza_A          249 LRMKPTRILLAELRGGEAYDFI-NVAAS-G-HGGSITSCHAGS  288 (361)
T ss_dssp             TTSCCSEEEESCCCSTHHHHHH-HHHHT-T-CCSCEEEEECSS
T ss_pred             HhcCCCEEEEcCchHHHHHHHH-HHHhc-C-CCeEEEEECCCC
Confidence            7777778888998765544433 22221 1 123566777653

>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A

Probab=97.16  E-value=0.00029  Score=55.30  Aligned_cols=25  Identities=28%  Similarity=0.476  Sum_probs=22.5

Q ss_pred             eeEEEEEecCCCcHHHHHHHHHHHh
Q 039455           49 VRFIGICGMGGIGKTTLAKVLYNTL   73 (216)
Q Consensus        49 ~~~i~I~G~~GiGKTtL~~~~~~~~   73 (216)
                      ..+|+|.||+|+|||+|+..++..+
T Consensus         3 ~~~i~i~GptgsGKt~la~~La~~~   27 (322)
T 3exa_A            3 EKLVAIVGPTAVGKTKTSVMLAKRL   27 (322)
T ss_dssp             CEEEEEECCTTSCHHHHHHHHHHTT
T ss_pred             CcEEEEECCCcCCHHHHHHHHHHhC
Confidence            4689999999999999999999864

>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*

Probab=97.15  E-value=0.00029  Score=51.64  Aligned_cols=24  Identities=25%  Similarity=0.385  Sum_probs=21.9

Q ss_pred             EEEEEecCCCcHHHHHHHHHHHhc
Q 039455           51 FIGICGMGGIGKTTLAKVLYNTLK   74 (216)
Q Consensus        51 ~i~I~G~~GiGKTtL~~~~~~~~~   74 (216)
                      +|+|+|++|+||||+++.++..+.
T Consensus         4 ~i~i~G~~GsGKst~~~~la~~lg   27 (208)
T 3ake_A            4 IVTIDGPSASGKSSVARRVAAALG   27 (208)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHHT
T ss_pred             EEEEECCCCCCHHHHHHHHHHhcC
Confidence            899999999999999999988653

>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*

Probab=97.15  E-value=0.00029  Score=53.06  Aligned_cols=26  Identities=23%  Similarity=0.409  Sum_probs=22.9

Q ss_pred             eeEEEEEecCCCcHHHHHHHHHHHhc
Q 039455           49 VRFIGICGMGGIGKTTLAKVLYNTLK   74 (216)
Q Consensus        49 ~~~i~I~G~~GiGKTtL~~~~~~~~~   74 (216)
                      ..+++|.|++|+||||+++.++..+.
T Consensus         9 ~~~i~i~G~~GsGKsTla~~la~~lg   34 (233)
T 3r20_A            9 SLVVAVDGPAGTGKSSVSRGLARALG   34 (233)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHhC
Confidence            35899999999999999999998653

>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*

Probab=97.15  E-value=0.00019  Score=53.87  Aligned_cols=26  Identities=27%  Similarity=0.114  Sum_probs=23.4

Q ss_pred             CCeeEEEEEecCCCcHHHHHHHHHHH
Q 039455           47 DDVRFIGICGMGGIGKTTLAKVLYNT   72 (216)
Q Consensus        47 ~~~~~i~I~G~~GiGKTtL~~~~~~~   72 (216)
                      ..+..++|.|++|+||||+++.+++.
T Consensus        18 ~~g~~i~i~G~~GsGKSTl~~~L~~~   43 (230)
T 2vp4_A           18 TQPFTVLIEGNIGSGKTTYLNHFEKY   43 (230)
T ss_dssp             CCCEEEEEECSTTSCHHHHHHTTGGG
T ss_pred             CCceEEEEECCCCCCHHHHHHHHHhc
Confidence            45789999999999999999998875

>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*

Probab=97.14  E-value=0.0003  Score=51.07  Aligned_cols=25  Identities=20%  Similarity=0.286  Sum_probs=22.0

Q ss_pred             eeEEEEEecCCCcHHHHHHHHHHHh
Q 039455           49 VRFIGICGMGGIGKTTLAKVLYNTL   73 (216)
Q Consensus        49 ~~~i~I~G~~GiGKTtL~~~~~~~~   73 (216)
                      .-.++|.|++|+|||||++.+.+..
T Consensus        29 ~~kv~lvG~~g~GKSTLl~~l~~~~   53 (191)
T 1oix_A           29 LFKVVLIGDSGVGKSNLLSRFTRNE   53 (191)
T ss_dssp             EEEEEEEECTTSSHHHHHHHHHHSC
T ss_pred             ceEEEEECcCCCCHHHHHHHHhcCC
Confidence            3589999999999999999998743

>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*

Probab=97.14  E-value=0.00035  Score=55.84  Aligned_cols=30  Identities=30%  Similarity=0.377  Sum_probs=25.8

Q ss_pred             CCeeEEEEEecCCCcHHHHHHHHHHHhcCC
Q 039455           47 DDVRFIGICGMGGIGKTTLAKVLYNTLKDQ   76 (216)
Q Consensus        47 ~~~~~i~I~G~~GiGKTtL~~~~~~~~~~~   76 (216)
                      ..+..++|.|++|+|||||++.+++.....
T Consensus        69 ~~Gq~~gIiG~nGaGKTTLl~~I~g~~~~~   98 (347)
T 2obl_A           69 GIGQRIGIFAGSGVGKSTLLGMICNGASAD   98 (347)
T ss_dssp             ETTCEEEEEECTTSSHHHHHHHHHHHSCCS
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhcCCCCC
Confidence            345899999999999999999999986543

>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1

Probab=97.13  E-value=0.00028  Score=56.73  Aligned_cols=27  Identities=22%  Similarity=0.327  Sum_probs=24.2

Q ss_pred             eeEEEEEecCCCcHHHHHHHHHHHhcC
Q 039455           49 VRFIGICGMGGIGKTTLAKVLYNTLKD   75 (216)
Q Consensus        49 ~~~i~I~G~~GiGKTtL~~~~~~~~~~   75 (216)
                      ...++|+|++|+|||||++.+++.+..
T Consensus       170 g~k~~IvG~nGsGKSTLlk~L~gl~~~  196 (365)
T 1lw7_A          170 AKTVAILGGESSGKSVLVNKLAAVFNT  196 (365)
T ss_dssp             CEEEEEECCTTSHHHHHHHHHHHHTTC
T ss_pred             hCeEEEECCCCCCHHHHHHHHHHHhCC
Confidence            679999999999999999999987653

>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*

Probab=97.13  E-value=0.00033  Score=51.87  Aligned_cols=23  Identities=26%  Similarity=0.219  Sum_probs=21.0

Q ss_pred             EEEEEecCCCcHHHHHHHHHHHh
Q 039455           51 FIGICGMGGIGKTTLAKVLYNTL   73 (216)
Q Consensus        51 ~i~I~G~~GiGKTtL~~~~~~~~   73 (216)
                      .|+|.|++|+||||+++.++..+
T Consensus         2 ~I~l~G~~GsGKsT~a~~L~~~~   24 (214)
T 1e4v_A            2 RIILLGAPVAGKGTQAQFIMEKY   24 (214)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHh
Confidence            47999999999999999999876

>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}

Probab=97.12  E-value=0.00029  Score=55.87  Aligned_cols=27  Identities=22%  Similarity=0.363  Sum_probs=23.7

Q ss_pred             CeeEEEEEecCCCcHHHHHHHHHHHhc
Q 039455           48 DVRFIGICGMGGIGKTTLAKVLYNTLK   74 (216)
Q Consensus        48 ~~~~i~I~G~~GiGKTtL~~~~~~~~~   74 (216)
                      ...+|+|+||.|+|||+|+..++.++.
T Consensus        39 ~~~lIvI~GPTgsGKTtLa~~LA~~l~   65 (339)
T 3a8t_A           39 KEKLLVLMGATGTGKSRLSIDLAAHFP   65 (339)
T ss_dssp             CCEEEEEECSTTSSHHHHHHHHHTTSC
T ss_pred             CCceEEEECCCCCCHHHHHHHHHHHCC
Confidence            347999999999999999999998653

>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}

Probab=97.12  E-value=0.00027  Score=52.50  Aligned_cols=24  Identities=21%  Similarity=0.271  Sum_probs=22.2

Q ss_pred             eEEEEEecCCCcHHHHHHHHHHHh
Q 039455           50 RFIGICGMGGIGKTTLAKVLYNTL   73 (216)
Q Consensus        50 ~~i~I~G~~GiGKTtL~~~~~~~~   73 (216)
                      ..|+|.|++|+||||+++.++..+
T Consensus         6 ~~I~l~G~~GsGKsT~a~~La~~l   29 (217)
T 3be4_A            6 HNLILIGAPGSGKGTQCEFIKKEY   29 (217)
T ss_dssp             CEEEEEECTTSSHHHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHh
Confidence            579999999999999999999876

>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}

Probab=97.12  E-value=0.00089  Score=49.52  Aligned_cols=44  Identities=23%  Similarity=0.205  Sum_probs=31.3

Q ss_pred             chhHHHHHHHHHhcCCCCeeEEEEEecCCCcHHHHHHHHHHHhcCC
Q 039455           31 IASRMEKMNGYLEAGLDDVRFIGICGMGGIGKTTLAKVLYNTLKDQ   76 (216)
Q Consensus        31 R~~~~~~l~~~l~~~~~~~~~i~I~G~~GiGKTtL~~~~~~~~~~~   76 (216)
                      .++..+.+...+..  .....++|+|.+|+|||||+..++......
T Consensus        14 ~~~~~~~~~~~~~~--~~~~~i~i~G~~g~GKTTl~~~l~~~~~~~   57 (221)
T 2wsm_A           14 NKRLAEKNREALRE--SGTVAVNIMGAIGSGKTLLIERTIERIGNE   57 (221)
T ss_dssp             HHHHHHHHHHHHHH--HTCEEEEEEECTTSCHHHHHHHHHHHHTTT
T ss_pred             cHHHHHHHHHhhcc--cCceEEEEEcCCCCCHHHHHHHHHHHhccC
Confidence            34444455554433  245799999999999999999999875443

>1g8f_A Sulfate adenylyltransferase; alpha-beta protein, beta-barrel, rossmann-fold, kinase fold; 1.95A {Saccharomyces cerevisiae} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1g8g_A* 1g8h_A* 1j70_A 1jec_A 1jed_A* 1jee_A*

Probab=97.11  E-value=0.00047  Score=57.79  Aligned_cols=48  Identities=8%  Similarity=-0.020  Sum_probs=36.2

Q ss_pred             cccchhHHHHHHHHHhcCCCCeeEEEEEecCCCcHHHHHHHHHHHhcC
Q 039455           28 LVGIASRMEKMNGYLEAGLDDVRFIGICGMGGIGKTTLAKVLYNTLKD   75 (216)
Q Consensus        28 ~vgR~~~~~~l~~~l~~~~~~~~~i~I~G~~GiGKTtL~~~~~~~~~~   75 (216)
                      ..-|.+..+.+.+.......+..+|+++|++|+||||+++.++.++..
T Consensus       374 ~f~rpeV~~vLr~~~~~~~~~~~~I~l~GlsGsGKSTIa~~La~~L~~  421 (511)
T 1g8f_A          374 WFSYPEVVKILRESNPPRPKQGFSIVLGNSLTVSREQLSIALLSTFLQ  421 (511)
T ss_dssp             TTSCHHHHHHHHHHSCCGGGCCEEEEECTTCCSCHHHHHHHHHHHHTT
T ss_pred             cccChhhHHHHHHhcccccccceEEEecccCCCCHHHHHHHHHHHHHH
Confidence            455665666666655322345689999999999999999999998864

>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*

Probab=97.11  E-value=0.0013  Score=48.72  Aligned_cols=40  Identities=33%  Similarity=0.360  Sum_probs=29.1

Q ss_pred             HHHHHHHHHhcCCCCeeEEEEEecCCCcHHHHHHHHHHHhcC
Q 039455           34 RMEKMNGYLEAGLDDVRFIGICGMGGIGKTTLAKVLYNTLKD   75 (216)
Q Consensus        34 ~~~~l~~~l~~~~~~~~~i~I~G~~GiGKTtL~~~~~~~~~~   75 (216)
                      ..+.+...+..  .....|+|+|.+|+|||||+..++.....
T Consensus        25 ~a~~~r~~~~~--~~~~~i~ivG~~gvGKTtl~~~l~~~~~~   64 (226)
T 2hf9_A           25 LADKNRKLLNK--HGVVAFDFMGAIGSGKTLLIEKLIDNLKD   64 (226)
T ss_dssp             HHHHHHHHHHH--TTCEEEEEEESTTSSHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHh--CCCeEEEEEcCCCCCHHHHHHHHHHHhcc
Confidence            34445554443  24578999999999999999999986533

>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A

Probab=97.10  E-value=0.00042  Score=54.25  Aligned_cols=26  Identities=35%  Similarity=0.243  Sum_probs=23.2

Q ss_pred             CeeEEEEEecCCCcHHHHHHHHHHHh
Q 039455           48 DVRFIGICGMGGIGKTTLAKVLYNTL   73 (216)
Q Consensus        48 ~~~~i~I~G~~GiGKTtL~~~~~~~~   73 (216)
                      ...+++|+||+|+|||+|+..++..+
T Consensus         9 ~~~~i~i~GptgsGKt~la~~La~~~   34 (316)
T 3foz_A            9 LPKAIFLMGPTASGKTALAIELRKIL   34 (316)
T ss_dssp             CCEEEEEECCTTSCHHHHHHHHHHHS
T ss_pred             CCcEEEEECCCccCHHHHHHHHHHhC
Confidence            35789999999999999999999864

>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A

Probab=97.10  E-value=0.00044  Score=51.94  Aligned_cols=29  Identities=34%  Similarity=0.453  Sum_probs=25.8

Q ss_pred             CCeeEEEEEecCCCcHHHHHHHHHHHhcC
Q 039455           47 DDVRFIGICGMGGIGKTTLAKVLYNTLKD   75 (216)
Q Consensus        47 ~~~~~i~I~G~~GiGKTtL~~~~~~~~~~   75 (216)
                      ..+..|+|.|++|+||||+++.++..+..
T Consensus        24 ~~g~~i~i~G~~GsGKsT~~~~l~~~l~~   52 (229)
T 4eaq_A           24 AMSAFITFEGPEGSGKTTVINEVYHRLVK   52 (229)
T ss_dssp             CCCEEEEEECCTTSCHHHHHHHHHHHHTT
T ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHHHHhc
Confidence            35689999999999999999999998765

>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A

Probab=97.09  E-value=0.00041  Score=54.75  Aligned_cols=26  Identities=35%  Similarity=0.308  Sum_probs=23.0

Q ss_pred             eeEEEEEecCCCcHHHHHHHHHHHhc
Q 039455           49 VRFIGICGMGGIGKTTLAKVLYNTLK   74 (216)
Q Consensus        49 ~~~i~I~G~~GiGKTtL~~~~~~~~~   74 (216)
                      ...|+|+||+|+|||||+..++.++.
T Consensus         5 ~~~i~i~GptGsGKTtla~~La~~l~   30 (323)
T 3crm_A            5 PPAIFLMGPTAAGKTDLAMALADALP   30 (323)
T ss_dssp             CEEEEEECCTTSCHHHHHHHHHHHSC
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHHcC
Confidence            36899999999999999999998653

>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*

Probab=97.09  E-value=0.00055  Score=49.59  Aligned_cols=26  Identities=27%  Similarity=0.105  Sum_probs=21.9

Q ss_pred             eeEEEEEecCCCcHHHHHHHHHHHhc
Q 039455           49 VRFIGICGMGGIGKTTLAKVLYNTLK   74 (216)
Q Consensus        49 ~~~i~I~G~~GiGKTtL~~~~~~~~~   74 (216)
                      +.+++++|+.|+||||++..++.++.
T Consensus         3 g~i~vi~G~~gsGKTT~ll~~~~~~~   28 (184)
T 2orw_A            3 GKLTVITGPMYSGKTTELLSFVEIYK   28 (184)
T ss_dssp             CCEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred             cEEEEEECCCCCCHHHHHHHHHHHHH
Confidence            36889999999999999977776654

>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*

Probab=97.09  E-value=0.00036  Score=52.07  Aligned_cols=23  Identities=30%  Similarity=0.346  Sum_probs=21.1

Q ss_pred             EEEEEecCCCcHHHHHHHHHHHh
Q 039455           51 FIGICGMGGIGKTTLAKVLYNTL   73 (216)
Q Consensus        51 ~i~I~G~~GiGKTtL~~~~~~~~   73 (216)
                      .|+|.|++|+||||+++.++..+
T Consensus         2 ~I~l~G~~GsGKsT~a~~La~~l   24 (223)
T 2xb4_A            2 NILIFGPNGSGKGTQGNLVKDKY   24 (223)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHh
Confidence            58999999999999999998876

>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10

Probab=97.08  E-value=0.00099  Score=53.09  Aligned_cols=37  Identities=19%  Similarity=0.224  Sum_probs=28.0

Q ss_pred             HHHHHhcCCCCeeEEEEEecCCCcHHHHHHHHHHHhc
Q 039455           38 MNGYLEAGLDDVRFIGICGMGGIGKTTLAKVLYNTLK   74 (216)
Q Consensus        38 l~~~l~~~~~~~~~i~I~G~~GiGKTtL~~~~~~~~~   74 (216)
                      +...+.........++|+|++|+|||||+..++..+.
T Consensus        45 ~~~~l~~~~~~~~~i~i~G~~g~GKSTl~~~l~~~~~   81 (341)
T 2p67_A           45 LLDAIMPYCGNTLRLGVTGTPGAGKSTFLEAFGMLLI   81 (341)
T ss_dssp             HHHHHGGGCSCSEEEEEEECTTSCHHHHHHHHHHHHH
T ss_pred             HHHhCCcccCCCEEEEEEcCCCCCHHHHHHHHHHHHH
Confidence            3333333335678999999999999999999987654

>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*

Probab=97.08  E-value=0.00029  Score=51.54  Aligned_cols=25  Identities=28%  Similarity=0.169  Sum_probs=22.4

Q ss_pred             eeEEEEEecCCCcHHHHHHHHHHHh
Q 039455           49 VRFIGICGMGGIGKTTLAKVLYNTL   73 (216)
Q Consensus        49 ~~~i~I~G~~GiGKTtL~~~~~~~~   73 (216)
                      +..++|+|++|+|||+|+..++.+.
T Consensus        34 g~~ilI~GpsGsGKStLA~~La~~g   58 (205)
T 2qmh_A           34 GLGVLITGDSGVGKSETALELVQRG   58 (205)
T ss_dssp             TEEEEEECCCTTTTHHHHHHHHTTT
T ss_pred             CEEEEEECCCCCCHHHHHHHHHHhC
Confidence            4789999999999999999998754

>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6

Probab=97.08  E-value=0.00019  Score=55.98  Aligned_cols=27  Identities=19%  Similarity=0.417  Sum_probs=20.4

Q ss_pred             CeeEEEEEecCCCcHHHHHHHHHHHhc
Q 039455           48 DVRFIGICGMGGIGKTTLAKVLYNTLK   74 (216)
Q Consensus        48 ~~~~i~I~G~~GiGKTtL~~~~~~~~~   74 (216)
                      +..+|+|+|++|+||||+++.+...+.
T Consensus         4 ~~~iIgItG~sGSGKSTva~~L~~~lg   30 (290)
T 1a7j_A            4 KHPIISVTGSSGAGTSTVKHTFDQIFR   30 (290)
T ss_dssp             TSCEEEEESCC---CCTHHHHHHHHHH
T ss_pred             CceEEEEECCCCCCHHHHHHHHHHHHh
Confidence            346899999999999999999988653

>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*

Probab=97.08  E-value=0.00041  Score=48.47  Aligned_cols=24  Identities=29%  Similarity=0.365  Sum_probs=21.1

Q ss_pred             eEEEEEecCCCcHHHHHHHHHHHh
Q 039455           50 RFIGICGMGGIGKTTLAKVLYNTL   73 (216)
Q Consensus        50 ~~i~I~G~~GiGKTtL~~~~~~~~   73 (216)
                      ...+|+|++|+|||+++.++..-+
T Consensus        24 g~~~I~G~NGsGKStil~Ai~~~l   47 (149)
T 1f2t_A           24 GINLIIGQNGSGKSSLLDAILVGL   47 (149)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             CeEEEECCCCCCHHHHHHHHHHHH
Confidence            688999999999999999987543

>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*

Probab=97.08  E-value=0.00031  Score=51.20  Aligned_cols=24  Identities=21%  Similarity=0.336  Sum_probs=21.4

Q ss_pred             eeEEEEEecCCCcHHHHHHHHHHH
Q 039455           49 VRFIGICGMGGIGKTTLAKVLYNT   72 (216)
Q Consensus        49 ~~~i~I~G~~GiGKTtL~~~~~~~   72 (216)
                      .-.++|.|++|+|||||++.+.+.
T Consensus         5 ~~kv~lvG~~g~GKSTLl~~l~~~   28 (199)
T 2f9l_A            5 LFKVVLIGDSGVGKSNLLSRFTRN   28 (199)
T ss_dssp             EEEEEEESSTTSSHHHHHHHHHHS
T ss_pred             eEEEEEECcCCCCHHHHHHHHhcC
Confidence            357899999999999999999874

>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}

Probab=97.07  E-value=0.00039  Score=55.19  Aligned_cols=25  Identities=28%  Similarity=0.293  Sum_probs=22.6

Q ss_pred             eEEEEEecCCCcHHHHHHHHHHHhc
Q 039455           50 RFIGICGMGGIGKTTLAKVLYNTLK   74 (216)
Q Consensus        50 ~~i~I~G~~GiGKTtL~~~~~~~~~   74 (216)
                      .+|+|.||+|+|||||+..++..+.
T Consensus         8 ~lI~I~GptgSGKTtla~~La~~l~   32 (340)
T 3d3q_A            8 FLIVIVGPTASGKTELSIEVAKKFN   32 (340)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHHTT
T ss_pred             ceEEEECCCcCcHHHHHHHHHHHcC
Confidence            5899999999999999999998753

>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1

Probab=97.06  E-value=0.00037  Score=55.04  Aligned_cols=26  Identities=31%  Similarity=0.411  Sum_probs=23.2

Q ss_pred             CeeEEEEEecCCCcHHHHHHHHHHHh
Q 039455           48 DVRFIGICGMGGIGKTTLAKVLYNTL   73 (216)
Q Consensus        48 ~~~~i~I~G~~GiGKTtL~~~~~~~~   73 (216)
                      ..++++|+|++|+|||||++.+....
T Consensus         3 ~i~v~~i~G~~GaGKTTll~~l~~~~   28 (318)
T 1nij_A            3 PIAVTLLTGFLGAGKTTLLRHILNEQ   28 (318)
T ss_dssp             CEEEEEEEESSSSSCHHHHHHHHHSC
T ss_pred             cccEEEEEecCCCCHHHHHHHHHhhc
Confidence            46799999999999999999999754

>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*

Probab=97.06  E-value=0.00044  Score=51.91  Aligned_cols=26  Identities=27%  Similarity=0.119  Sum_probs=23.1

Q ss_pred             eeEEEEEecCCCcHHHHHHHHHHHhc
Q 039455           49 VRFIGICGMGGIGKTTLAKVLYNTLK   74 (216)
Q Consensus        49 ~~~i~I~G~~GiGKTtL~~~~~~~~~   74 (216)
                      ...|+|.|++|+||||+++.++.++.
T Consensus        16 ~~~I~l~G~~GsGKsT~a~~La~~l~   41 (233)
T 1ak2_A           16 GVRAVLLGPPGAGKGTQAPKLAKNFC   41 (233)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHhC
Confidence            36899999999999999999998763

>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}

Probab=97.05  E-value=0.00049  Score=53.90  Aligned_cols=25  Identities=20%  Similarity=0.247  Sum_probs=22.0

Q ss_pred             eeEEEEEecCCCcHHHHHHHHHHHhc
Q 039455           49 VRFIGICGMGGIGKTTLAKVLYNTLK   74 (216)
Q Consensus        49 ~~~i~I~G~~GiGKTtL~~~~~~~~~   74 (216)
                      +..++|.|++|+|||||++.+. ...
T Consensus       165 G~i~~l~G~sG~GKSTLln~l~-~~~  189 (302)
T 2yv5_A          165 GFICILAGPSGVGKSSILSRLT-GEE  189 (302)
T ss_dssp             TCEEEEECSTTSSHHHHHHHHH-SCC
T ss_pred             CcEEEEECCCCCCHHHHHHHHH-Hhh
Confidence            3689999999999999999998 543

>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}

Probab=97.03  E-value=0.00049  Score=53.31  Aligned_cols=24  Identities=33%  Similarity=0.673  Sum_probs=21.4

Q ss_pred             CeeEEEEEecCCCcHHHHHHHHHH
Q 039455           48 DVRFIGICGMGGIGKTTLAKVLYN   71 (216)
Q Consensus        48 ~~~~i~I~G~~GiGKTtL~~~~~~   71 (216)
                      ....|+|+|++|+||||+++.++.
T Consensus        74 ~~~iI~I~G~~GSGKSTva~~La~   97 (281)
T 2f6r_A           74 GLYVLGLTGISGSGKSSVAQRLKN   97 (281)
T ss_dssp             TCEEEEEEECTTSCHHHHHHHHHH
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHH
Confidence            356899999999999999999983

>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A

Probab=97.03  E-value=0.0034  Score=51.44  Aligned_cols=36  Identities=28%  Similarity=0.244  Sum_probs=28.1

Q ss_pred             CeeEEEEEecCCCcHHHHHHHHHHHhcCCCCceEee
Q 039455           48 DVRFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFL   83 (216)
Q Consensus        48 ~~~~i~I~G~~GiGKTtL~~~~~~~~~~~~~~~~~~   83 (216)
                      .+.+++++|++|+||||++..++..+......+.++
T Consensus        97 ~~~vi~i~G~~GsGKTT~~~~LA~~l~~~g~~Vllv  132 (425)
T 2ffh_A           97 DRNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLV  132 (425)
T ss_dssp             SSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEE
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEe
Confidence            367899999999999999999998776553334433

>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1

Probab=97.01  E-value=0.00051  Score=51.67  Aligned_cols=27  Identities=30%  Similarity=0.357  Sum_probs=23.8

Q ss_pred             CCeeEEEEEecCCCcHHHHHHHHHHHh
Q 039455           47 DDVRFIGICGMGGIGKTTLAKVLYNTL   73 (216)
Q Consensus        47 ~~~~~i~I~G~~GiGKTtL~~~~~~~~   73 (216)
                      ..+..|+|+|++|+||||+++.++..+
T Consensus        14 ~~~~~i~i~G~~gsGKst~~~~l~~~l   40 (236)
T 1q3t_A           14 MKTIQIAIDGPASSGKSTVAKIIAKDF   40 (236)
T ss_dssp             CCCCEEEEECSSCSSHHHHHHHHHHHH
T ss_pred             cCCcEEEEECCCCCCHHHHHHHHHHHc
Confidence            456799999999999999999998764

>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}

Probab=97.01  E-value=0.00082  Score=55.42  Aligned_cols=29  Identities=17%  Similarity=0.320  Sum_probs=25.5

Q ss_pred             CCeeEEEEEecCCCcHHHHHHHHHHHhcC
Q 039455           47 DDVRFIGICGMGGIGKTTLAKVLYNTLKD   75 (216)
Q Consensus        47 ~~~~~i~I~G~~GiGKTtL~~~~~~~~~~   75 (216)
                      ..+..++|.|++|+|||||++.+++....
T Consensus       155 ~~Gq~~~IvG~sGsGKSTLl~~Iag~~~~  183 (438)
T 2dpy_A          155 GRGQRMGLFAGSGVGKSVLLGMMARYTRA  183 (438)
T ss_dssp             BTTCEEEEEECTTSSHHHHHHHHHHHSCC
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhcccCC
Confidence            45689999999999999999999997654

>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}

Probab=97.00  E-value=0.00036  Score=57.91  Aligned_cols=27  Identities=26%  Similarity=0.241  Sum_probs=24.0

Q ss_pred             CCeeEEEEEecCCCcHHHHHHHHHHHh
Q 039455           47 DDVRFIGICGMGGIGKTTLAKVLYNTL   73 (216)
Q Consensus        47 ~~~~~i~I~G~~GiGKTtL~~~~~~~~   73 (216)
                      ..+..++|.|++|+|||||++.+++.+
T Consensus       136 ~~Ge~v~IvGpnGsGKSTLlr~L~Gl~  162 (460)
T 2npi_A          136 FEGPRVVIVGGSQTGKTSLSRTLCSYA  162 (460)
T ss_dssp             SSCCCEEEEESTTSSHHHHHHHHHHTT
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhCcc
Confidence            456899999999999999999999854

>3hjn_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynth nucleotide-binding, transferase, structural genomics; HET: ADP TYD; 2.10A {Thermotoga maritima}

Probab=96.98  E-value=0.0038  Score=45.62  Aligned_cols=33  Identities=27%  Similarity=0.376  Sum_probs=25.9

Q ss_pred             EEEEEecCCCcHHHHHHHHHHHhcCCCCceEee
Q 039455           51 FIGICGMGGIGKTTLAKVLYNTLKDQFEASSFL   83 (216)
Q Consensus        51 ~i~I~G~~GiGKTtL~~~~~~~~~~~~~~~~~~   83 (216)
                      -|+|-|.-|+||||.++.+++.+......+.+.
T Consensus         2 fI~~EG~DGsGKsTq~~~L~~~L~~~g~~v~~t   34 (197)
T 3hjn_A            2 FITFEGIDGSGKSTQIQLLAQYLEKRGKKVILK   34 (197)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEE
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEE
Confidence            377889999999999999999887654444443

>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*

Probab=96.93  E-value=0.00062  Score=56.66  Aligned_cols=25  Identities=24%  Similarity=0.274  Sum_probs=22.8

Q ss_pred             eEEEEEecCCCcHHHHHHHHHHHhc
Q 039455           50 RFIGICGMGGIGKTTLAKVLYNTLK   74 (216)
Q Consensus        50 ~~i~I~G~~GiGKTtL~~~~~~~~~   74 (216)
                      .+++|.|++|+|||||++.++....
T Consensus        30 e~~~liG~nGsGKSTLl~~l~Gl~~   54 (483)
T 3euj_A           30 LVTTLSGGNGAGKSTTMAGFVTALI   54 (483)
T ss_dssp             SEEEEECCTTSSHHHHHHHHHHHHC
T ss_pred             ceEEEECCCCCcHHHHHHHHhcCCC
Confidence            7999999999999999999998654

>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A

Probab=96.93  E-value=0.00059  Score=53.17  Aligned_cols=23  Identities=30%  Similarity=0.405  Sum_probs=21.1

Q ss_pred             eEEEEEecCCCcHHHHHHHHHHH
Q 039455           50 RFIGICGMGGIGKTTLAKVLYNT   72 (216)
Q Consensus        50 ~~i~I~G~~GiGKTtL~~~~~~~   72 (216)
                      ..|+|.|++|+||||+++.++.+
T Consensus         3 ~~I~l~G~~GsGKST~a~~L~~~   25 (301)
T 1ltq_A            3 KIILTIGCPGSGKSTWAREFIAK   25 (301)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHh
Confidence            57999999999999999999874

>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*

Probab=96.92  E-value=0.0006  Score=48.08  Aligned_cols=22  Identities=27%  Similarity=0.372  Sum_probs=20.4

Q ss_pred             eEEEEEecCCCcHHHHHHHHHH
Q 039455           50 RFIGICGMGGIGKTTLAKVLYN   71 (216)
Q Consensus        50 ~~i~I~G~~GiGKTtL~~~~~~   71 (216)
                      ..++|.|++|+|||||++.+.+
T Consensus         4 ~~v~lvG~~gvGKStL~~~l~~   25 (165)
T 2wji_A            4 YEIALIGNPNVGKSTIFNALTG   25 (165)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHC
T ss_pred             cEEEEECCCCCCHHHHHHHHhC
Confidence            5789999999999999999986

>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}

Probab=96.92  E-value=0.0011  Score=54.96  Aligned_cols=50  Identities=18%  Similarity=0.228  Sum_probs=32.2

Q ss_pred             cccccccchhHHHHHHH----HHhcCCCCeeEEEEEecCCCcHHHHHHHHHHHhcCC
Q 039455           24 AVDGLVGIASRMEKMNG----YLEAGLDDVRFIGICGMGGIGKTTLAKVLYNTLKDQ   76 (216)
Q Consensus        24 ~~~~~vgR~~~~~~l~~----~l~~~~~~~~~i~I~G~~GiGKTtL~~~~~~~~~~~   76 (216)
                      .|..|-+-+.+-++...    ++..+   ...++|.|++|+|||+++..++..+...
T Consensus        19 ~p~~~~~Ln~~Q~~av~~~~~~i~~~---~~~~li~G~aGTGKT~ll~~~~~~l~~~   72 (459)
T 3upu_A           19 SHMTFDDLTEGQKNAFNIVMKAIKEK---KHHVTINGPAGTGATTLTKFIIEALIST   72 (459)
T ss_dssp             --CCSSCCCHHHHHHHHHHHHHHHSS---SCEEEEECCTTSCHHHHHHHHHHHHHHT
T ss_pred             CCCccccCCHHHHHHHHHHHHHHhcC---CCEEEEEeCCCCCHHHHHHHHHHHHHhc
Confidence            34445554444443333    33332   2499999999999999999999876544

>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}

Probab=96.91  E-value=0.00095  Score=53.36  Aligned_cols=27  Identities=26%  Similarity=0.348  Sum_probs=24.0

Q ss_pred             CeeEEEEEecCCCcHHHHHHHHHHHhc
Q 039455           48 DVRFIGICGMGGIGKTTLAKVLYNTLK   74 (216)
Q Consensus        48 ~~~~i~I~G~~GiGKTtL~~~~~~~~~   74 (216)
                      ....++|+|++|+|||||++.+.....
T Consensus        73 ~~~~v~lvG~pgaGKSTLln~L~~~~~   99 (349)
T 2www_A           73 LAFRVGLSGPPGAGKSTFIEYFGKMLT   99 (349)
T ss_dssp             SCEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred             CceEEEEEcCCCCCHHHHHHHHHHHhh
Confidence            468999999999999999999998554

>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}

Probab=96.91  E-value=0.002  Score=53.23  Aligned_cols=38  Identities=18%  Similarity=0.243  Sum_probs=29.3

Q ss_pred             CCeeEEEEEecCCCcHHHHHHHHHHHhcCCCCceEeec
Q 039455           47 DDVRFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLA   84 (216)
Q Consensus        47 ~~~~~i~I~G~~GiGKTtL~~~~~~~~~~~~~~~~~~~   84 (216)
                      ..+..++|.|++|+|||+|+..++.....+-..+.|++
T Consensus       195 ~~G~liiIaG~pG~GKTtlal~ia~~~a~~g~~vl~fS  232 (444)
T 3bgw_A          195 KRRNFVLIAARPSMGKTAFALKQAKNMSDNDDVVNLHS  232 (444)
T ss_dssp             CSSCEEEEEECSSSSHHHHHHHHHHHHHHTTCEEEEEC
T ss_pred             CCCcEEEEEeCCCCChHHHHHHHHHHHHHcCCEEEEEE
Confidence            45689999999999999999999886544333455554

>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}

Probab=96.91  E-value=0.0008  Score=48.51  Aligned_cols=25  Identities=32%  Similarity=0.254  Sum_probs=22.1

Q ss_pred             CeeEEEEEecCCCcHHHHHHHHHHH
Q 039455           48 DVRFIGICGMGGIGKTTLAKVLYNT   72 (216)
Q Consensus        48 ~~~~i~I~G~~GiGKTtL~~~~~~~   72 (216)
                      ....|+|+|++|+|||||+..+.+.
T Consensus        47 ~~~~i~vvG~~g~GKSsll~~l~~~   71 (193)
T 2ged_A           47 YQPSIIIAGPQNSGKTSLLTLLTTD   71 (193)
T ss_dssp             CCCEEEEECCTTSSHHHHHHHHHHS
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhcC
Confidence            4568999999999999999999874

>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*

Probab=96.90  E-value=0.00051  Score=56.29  Aligned_cols=27  Identities=19%  Similarity=0.278  Sum_probs=23.4

Q ss_pred             CCeeEEEEEecCCCcHHHHHHHHHHHh
Q 039455           47 DDVRFIGICGMGGIGKTTLAKVLYNTL   73 (216)
Q Consensus        47 ~~~~~i~I~G~~GiGKTtL~~~~~~~~   73 (216)
                      ....+|+|+|++|+||||+++.++...
T Consensus       256 ~~~~lIil~G~pGSGKSTla~~L~~~~  282 (416)
T 3zvl_A          256 PNPEVVVAVGFPGAGKSTFIQEHLVSA  282 (416)
T ss_dssp             SSCCEEEEESCTTSSHHHHHHHHTGGG
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHHhc
Confidence            346799999999999999999998754

>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}

Probab=96.89  E-value=0.00066  Score=55.58  Aligned_cols=25  Identities=40%  Similarity=0.508  Sum_probs=21.5

Q ss_pred             CeeE--EEEEecCCCcHHHHHHHHHHH
Q 039455           48 DVRF--IGICGMGGIGKTTLAKVLYNT   72 (216)
Q Consensus        48 ~~~~--i~I~G~~GiGKTtL~~~~~~~   72 (216)
                      .+..  ++|+|++|+|||||++.+++.
T Consensus        39 ~Gei~~vaLvG~nGaGKSTLln~L~G~   65 (427)
T 2qag_B           39 QGFCFNILCVGETGLGKSTLMDTLFNT   65 (427)
T ss_dssp             -CCEEEEEEECSTTSSSHHHHHHHHTS
T ss_pred             CCCeeEEEEECCCCCCHHHHHHHHhCc
Confidence            3456  999999999999999999874

>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}

Probab=96.87  E-value=0.00082  Score=47.99  Aligned_cols=24  Identities=29%  Similarity=0.317  Sum_probs=21.8

Q ss_pred             eeEEEEEecCCCcHHHHHHHHHHH
Q 039455           49 VRFIGICGMGGIGKTTLAKVLYNT   72 (216)
Q Consensus        49 ~~~i~I~G~~GiGKTtL~~~~~~~   72 (216)
                      +..++|.|++|+|||||+..+..+
T Consensus        16 G~gvli~G~SGaGKStlal~L~~r   39 (181)
T 3tqf_A           16 KMGVLITGEANIGKSELSLALIDR   39 (181)
T ss_dssp             TEEEEEEESSSSSHHHHHHHHHHT
T ss_pred             CEEEEEEcCCCCCHHHHHHHHHHc
Confidence            578999999999999999999873

>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1

Probab=96.86  E-value=0.0013  Score=55.30  Aligned_cols=26  Identities=19%  Similarity=0.091  Sum_probs=22.9

Q ss_pred             eEEEEEecCCCcHHHHHHHHHHHhcC
Q 039455           50 RFIGICGMGGIGKTTLAKVLYNTLKD   75 (216)
Q Consensus        50 ~~i~I~G~~GiGKTtL~~~~~~~~~~   75 (216)
                      ..++|+|++|+||||+++.+.+.+..
T Consensus       261 ~~i~I~GptGSGKTTlL~aL~~~i~~  286 (511)
T 2oap_1          261 FSAIVVGETASGKTTTLNAIMMFIPP  286 (511)
T ss_dssp             CCEEEEESTTSSHHHHHHHHGGGSCT
T ss_pred             CEEEEECCCCCCHHHHHHHHHhhCCC
Confidence            56999999999999999999986643

>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8

Probab=96.85  E-value=0.00065  Score=53.15  Aligned_cols=26  Identities=27%  Similarity=0.553  Sum_probs=22.7

Q ss_pred             eeEEEEEecCCCcHHHHHHHHHHHhc
Q 039455           49 VRFIGICGMGGIGKTTLAKVLYNTLK   74 (216)
Q Consensus        49 ~~~i~I~G~~GiGKTtL~~~~~~~~~   74 (216)
                      +..++|.|++|+|||||++.++....
T Consensus       169 geiv~l~G~sG~GKSTll~~l~g~~~  194 (301)
T 1u0l_A          169 GKISTMAGLSGVGKSSLLNAINPGLK  194 (301)
T ss_dssp             SSEEEEECSTTSSHHHHHHHHSTTCC
T ss_pred             CCeEEEECCCCCcHHHHHHHhccccc
Confidence            36899999999999999999987544

>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A

Probab=96.85  E-value=0.00076  Score=47.99  Aligned_cols=24  Identities=25%  Similarity=0.243  Sum_probs=21.5

Q ss_pred             eeEEEEEecCCCcHHHHHHHHHHH
Q 039455           49 VRFIGICGMGGIGKTTLAKVLYNT   72 (216)
Q Consensus        49 ~~~i~I~G~~GiGKTtL~~~~~~~   72 (216)
                      ...|+|+|.+|+|||||++.+.+.
T Consensus         4 ~~ki~ivG~~g~GKStLl~~l~~~   27 (172)
T 2gj8_A            4 GMKVVIAGRPNAGKSSLLNALAGR   27 (172)
T ss_dssp             CEEEEEEESTTSSHHHHHHHHHTS
T ss_pred             CCEEEEECCCCCCHHHHHHHHhCC
Confidence            467999999999999999999864

>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*

Probab=96.84  E-value=0.00043  Score=49.81  Aligned_cols=21  Identities=43%  Similarity=0.482  Sum_probs=19.5

Q ss_pred             EEEEEecCCCcHHHHHHHHHH
Q 039455           51 FIGICGMGGIGKTTLAKVLYN   71 (216)
Q Consensus        51 ~i~I~G~~GiGKTtL~~~~~~   71 (216)
                      .|+|+|++|+|||||++.+.+
T Consensus         4 kv~ivG~~gvGKStLl~~l~~   24 (184)
T 2zej_A            4 KLMIVGNTGSGKTTLLQQLMK   24 (184)
T ss_dssp             EEEEESCTTSSHHHHHHHHTC
T ss_pred             EEEEECCCCCCHHHHHHHHhc
Confidence            589999999999999999986

>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}

Probab=96.83  E-value=0.00042  Score=52.21  Aligned_cols=43  Identities=26%  Similarity=0.363  Sum_probs=29.1

Q ss_pred             HhcCCCCeeEEEEEecCCCcHHHHHHHHHHH-hcCCCCceEeec
Q 039455           42 LEAGLDDVRFIGICGMGGIGKTTLAKVLYNT-LKDQFEASSFLA   84 (216)
Q Consensus        42 l~~~~~~~~~i~I~G~~GiGKTtL~~~~~~~-~~~~~~~~~~~~   84 (216)
                      +..+-+.+..+.|.|++|+|||+|+..++.. ..+....+.|++
T Consensus        23 l~GGl~~G~l~~i~G~pG~GKT~l~l~~~~~~~~~~~~~v~~~s   66 (251)
T 2zts_A           23 IEGGFPEGTTVLLTGGTGTGKTTFAAQFIYKGAEEYGEPGVFVT   66 (251)
T ss_dssp             TTTSEETTCEEEEECCTTSSHHHHHHHHHHHHHHHHCCCEEEEE
T ss_pred             hcCCCCCCeEEEEEeCCCCCHHHHHHHHHHHHHHhcCCCceeec
Confidence            3334345689999999999999999998754 222233444543

>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}

Probab=96.83  E-value=0.00085  Score=48.14  Aligned_cols=24  Identities=25%  Similarity=0.326  Sum_probs=21.6

Q ss_pred             eeEEEEEecCCCcHHHHHHHHHHH
Q 039455           49 VRFIGICGMGGIGKTTLAKVLYNT   72 (216)
Q Consensus        49 ~~~i~I~G~~GiGKTtL~~~~~~~   72 (216)
                      ...|+|.|++|+|||||++.+.+.
T Consensus         7 ~~~i~lvG~~gvGKStL~~~l~~~   30 (188)
T 2wjg_A            7 SYEIALIGNPNVGKSTIFNALTGE   30 (188)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHTT
T ss_pred             CCEEEEECCCCCCHHHHHHHHhCC
Confidence            468999999999999999999873

>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}

Probab=96.82  E-value=0.00092  Score=46.50  Aligned_cols=23  Identities=26%  Similarity=0.379  Sum_probs=20.6

Q ss_pred             eEEEEEecCCCcHHHHHHHHHHH
Q 039455           50 RFIGICGMGGIGKTTLAKVLYNT   72 (216)
Q Consensus        50 ~~i~I~G~~GiGKTtL~~~~~~~   72 (216)
                      ..|+|.|++|+|||||+..+.+.
T Consensus         2 ~ki~v~G~~~~GKSsli~~l~~~   24 (161)
T 2dyk_A            2 HKVVIVGRPNVGKSSLFNRLLKK   24 (161)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHC
T ss_pred             CEEEEECCCCCCHHHHHHHHhCC
Confidence            46899999999999999999874

>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8

Probab=96.81  E-value=0.00045  Score=50.62  Aligned_cols=26  Identities=23%  Similarity=0.286  Sum_probs=22.5

Q ss_pred             CCeeEEEEEecCCCcHHHHHHHHHHH
Q 039455           47 DDVRFIGICGMGGIGKTTLAKVLYNT   72 (216)
Q Consensus        47 ~~~~~i~I~G~~GiGKTtL~~~~~~~   72 (216)
                      ..+..++|+|++|+|||||++.+.+.
T Consensus        24 ~~~~~v~lvG~~g~GKSTLl~~l~g~   49 (210)
T 1pui_A           24 DTGIEVAFAGRSNAGKSSALNTLTNQ   49 (210)
T ss_dssp             SCSEEEEEEECTTSSHHHHHTTTCCC
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHhCC
Confidence            45678999999999999999988753

>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*

Probab=96.81  E-value=0.00089  Score=54.33  Aligned_cols=24  Identities=33%  Similarity=0.556  Sum_probs=22.0

Q ss_pred             eEEEEEecCCCcHHHHHHHHHHHh
Q 039455           50 RFIGICGMGGIGKTTLAKVLYNTL   73 (216)
Q Consensus        50 ~~i~I~G~~GiGKTtL~~~~~~~~   73 (216)
                      .+|+|.||+|+|||||+..++..+
T Consensus         3 ~~i~i~GptgsGKttla~~La~~~   26 (409)
T 3eph_A            3 KVIVIAGTTGVGKSQLSIQLAQKF   26 (409)
T ss_dssp             EEEEEEECSSSSHHHHHHHHHHHH
T ss_pred             cEEEEECcchhhHHHHHHHHHHHC
Confidence            589999999999999999999864

>2iut_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- cell division, DNA translocation, KOPS, membrane; HET: DNA SAP; 2.25A {Pseudomonas aeruginosa} PDB: 2iuu_A*

Probab=96.80  E-value=0.022  Score=48.31  Aligned_cols=65  Identities=12%  Similarity=0.270  Sum_probs=39.5

Q ss_pred             eEEEEEeCCCCH-----HHHHHhhcCCCC--CCCCcEEEEEeCCch--hhh---ccCCcceEEecCCChHHHHHHHh
Q 039455          132 RVLVVLDDVDQL-----EQLQALAGNHDW--FGFGSRIIITTRDEH--VLK---GHGVTNIYKVRGLDYVEALQLFH  196 (216)
Q Consensus       132 ~~llvlDd~~~~-----~~~~~l~~~~~~--~~~~~~il~tsr~~~--~~~---~~~~~~~~~l~~l~~~~~~~ll~  196 (216)
                      .++||+|++..+     ..+...+..+..  ...|..+|++|..+.  ...   .-+....+.+..-+..++..+|.
T Consensus       344 ~ivvVIDE~~~L~~~~~~~~~~~L~~Iar~GRa~GIhLIlaTQRPs~d~I~~~Iran~~~RI~lrv~s~~Dsr~ILd  420 (574)
T 2iut_A          344 TIVVVVDEFADMMMIVGKKVEELIARIAQKARAAGIHLILATQRPSVDVITGLIKANIPTRIAFQVSSKIDSRTILD  420 (574)
T ss_dssp             EEEEEESCCTTHHHHTCHHHHHHHHHHHHHCTTTTEEEEEEESCCCTTTSCHHHHHTCCEEEEECCSCHHHHHHHHS
T ss_pred             cEEEEEeCHHHHhhhhhHHHHHHHHHHHHHHhhCCeEEEEEecCcccccccHHHHhhhccEEEEEcCCHHHHHHhcC
Confidence            468999999754     222222211111  135778888887664  221   11356678888888888888874

>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*

Probab=96.80  E-value=0.0018  Score=48.05  Aligned_cols=29  Identities=28%  Similarity=0.409  Sum_probs=25.5

Q ss_pred             CeeEEEEEecCCCcHHHHHHHHHHHhcCC
Q 039455           48 DVRFIGICGMGGIGKTTLAKVLYNTLKDQ   76 (216)
Q Consensus        48 ~~~~i~I~G~~GiGKTtL~~~~~~~~~~~   76 (216)
                      .+..|+|.|+.|+||||+++.+...+...
T Consensus         5 ~g~~i~~eG~~gsGKsT~~~~l~~~l~~~   33 (213)
T 4edh_A            5 TGLFVTLEGPEGAGKSTNRDYLAERLRER   33 (213)
T ss_dssp             CCEEEEEECSTTSSHHHHHHHHHHHHHTT
T ss_pred             CceEEEEEcCCCCCHHHHHHHHHHHHHHc
Confidence            35789999999999999999999987654

>1w4r_A Thymidine kinase; type II, human, cytosolic, phosphorylation, transferase; HET: TTP; 1.83A {Homo sapiens} PDB: 1xbt_A* 2wvj_A* 2j87_A*

Probab=96.76  E-value=0.00097  Score=48.60  Aligned_cols=30  Identities=20%  Similarity=0.024  Sum_probs=21.9

Q ss_pred             CCeeEEEEEecCCCcHH-HHHHHHHHHhcCC
Q 039455           47 DDVRFIGICGMGGIGKT-TLAKVLYNTLKDQ   76 (216)
Q Consensus        47 ~~~~~i~I~G~~GiGKT-tL~~~~~~~~~~~   76 (216)
                      ..+....|+|+-|+||| .|++.+.+.....
T Consensus        18 ~~g~l~fiyG~MgsGKTt~Ll~~i~n~~~~~   48 (195)
T 1w4r_A           18 TRGQIQVILGPMFSGKSTELMRRVRRFQIAQ   48 (195)
T ss_dssp             -CCEEEEEEECTTSCHHHHHHHHHHHHHHTT
T ss_pred             CceEEEEEECCCCCcHHHHHHHHHHHHHHcC
Confidence            34689999999999999 6666665544433

>2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A*

Probab=96.74  E-value=0.002  Score=47.69  Aligned_cols=36  Identities=14%  Similarity=-0.036  Sum_probs=27.6

Q ss_pred             CCeeEEEEEecCCCcHHHHHHHHHHHhcCCCCceEe
Q 039455           47 DDVRFIGICGMGGIGKTTLAKVLYNTLKDQFEASSF   82 (216)
Q Consensus        47 ~~~~~i~I~G~~GiGKTtL~~~~~~~~~~~~~~~~~   82 (216)
                      ..+.+.+++|+-|+||||.+...+.++..+...+..
T Consensus        26 ~~G~l~vitG~MgsGKTT~lL~~a~r~~~~g~kVli   61 (214)
T 2j9r_A           26 QNGWIEVICGSMFSGKSEELIRRVRRTQFAKQHAIV   61 (214)
T ss_dssp             CSCEEEEEECSTTSCHHHHHHHHHHHHHHTTCCEEE
T ss_pred             CCCEEEEEECCCCCcHHHHHHHHHHHHHHCCCEEEE
Confidence            446899999999999999999988876654333333

>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V

Probab=96.74  E-value=0.0008  Score=53.88  Aligned_cols=25  Identities=28%  Similarity=0.473  Sum_probs=22.5

Q ss_pred             eEEEEEecCCCcHHHHHHHHHHHhc
Q 039455           50 RFIGICGMGGIGKTTLAKVLYNTLK   74 (216)
Q Consensus        50 ~~i~I~G~~GiGKTtL~~~~~~~~~   74 (216)
                      ..++|.|++|+|||||++.+.....
T Consensus       216 ~~~~lvG~sG~GKSTLln~L~g~~~  240 (358)
T 2rcn_A          216 RISIFAGQSGVGKSSLLNALLGLQN  240 (358)
T ss_dssp             SEEEEECCTTSSHHHHHHHHHCCSS
T ss_pred             CEEEEECCCCccHHHHHHHHhcccc
Confidence            6899999999999999999987654

>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1

Probab=96.73  E-value=0.0012  Score=49.72  Aligned_cols=26  Identities=35%  Similarity=0.425  Sum_probs=23.3

Q ss_pred             eeEEEEEecCCCcHHHHHHHHHHHhc
Q 039455           49 VRFIGICGMGGIGKTTLAKVLYNTLK   74 (216)
Q Consensus        49 ~~~i~I~G~~GiGKTtL~~~~~~~~~   74 (216)
                      +..|+|.|+.|+||||+++.++..+.
T Consensus         2 ~~~i~~~G~~g~GKtt~~~~l~~~l~   27 (241)
T 2ocp_A            2 PRRLSIEGNIAVGKSTFVKLLTKTYP   27 (241)
T ss_dssp             CEEEEEEECTTSSHHHHHHHHHHHCT
T ss_pred             CeEEEEEcCCCCCHHHHHHHHHHHcC
Confidence            46899999999999999999998764

>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A

Probab=96.73  E-value=0.0021  Score=53.23  Aligned_cols=38  Identities=16%  Similarity=0.227  Sum_probs=29.0

Q ss_pred             CCeeEEEEEecCCCcHHHHHHHHHHHhcC-CCCceEeec
Q 039455           47 DDVRFIGICGMGGIGKTTLAKVLYNTLKD-QFEASSFLA   84 (216)
Q Consensus        47 ~~~~~i~I~G~~GiGKTtL~~~~~~~~~~-~~~~~~~~~   84 (216)
                      ..+..++|.|++|+|||||+..++..+.. .-..+.|++
T Consensus       201 ~~G~liiI~G~pG~GKTtl~l~ia~~~~~~~g~~Vl~~s  239 (454)
T 2r6a_A          201 QRSDLIIVAARPSVGKTAFALNIAQNVATKTNENVAIFS  239 (454)
T ss_dssp             CTTCEEEEECCTTSCHHHHHHHHHHHHHHHSSCCEEEEE
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHHHHHHHhCCCcEEEEE
Confidence            45679999999999999999999986543 223455554

>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...

Probab=96.73  E-value=0.001  Score=46.31  Aligned_cols=23  Identities=30%  Similarity=0.538  Sum_probs=20.5

Q ss_pred             eEEEEEecCCCcHHHHHHHHHHH
Q 039455           50 RFIGICGMGGIGKTTLAKVLYNT   72 (216)
Q Consensus        50 ~~i~I~G~~GiGKTtL~~~~~~~   72 (216)
                      -.|++.|.+|+|||||+..+.+.
T Consensus         4 ~~i~v~G~~~~GKssl~~~l~~~   26 (166)
T 2ce2_X            4 YKLVVVGAGGVGKSALTIQLIQN   26 (166)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHS
T ss_pred             eEEEEECCCCCCHHHHHHHHHhC
Confidence            46899999999999999999864

>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*

Probab=96.72  E-value=0.0023  Score=48.61  Aligned_cols=28  Identities=29%  Similarity=0.300  Sum_probs=24.6

Q ss_pred             CCeeEEEEEecCCCcHHHHHHHHHHHhc
Q 039455           47 DDVRFIGICGMGGIGKTTLAKVLYNTLK   74 (216)
Q Consensus        47 ~~~~~i~I~G~~GiGKTtL~~~~~~~~~   74 (216)
                      ....++++.|.+|+||||++..++..+.
T Consensus        12 ~~~~i~~~~GkgGvGKTTl~~~La~~l~   39 (262)
T 1yrb_A           12 MASMIVVFVGTAGSGKTTLTGEFGRYLE   39 (262)
T ss_dssp             CCCEEEEEECSTTSSHHHHHHHHHHHHT
T ss_pred             cceEEEEEeCCCCCCHHHHHHHHHHHHH
Confidence            3468999999999999999999997665

>3f9v_A Minichromosome maintenance protein MCM; replicative helicase, DNA replication, MCM complex, AAA+ Pro ATP-binding, DNA-binding, helicase; 4.35A {Sulfolobus solfataricus}

Probab=96.72  E-value=0.00045  Score=59.20  Aligned_cols=49  Identities=18%  Similarity=0.137  Sum_probs=35.0

Q ss_pred             ccccccchhHHHHHHHHHhcCCC---------CeeEEEEEecCCCcHHHHHHHHHHHh
Q 039455           25 VDGLVGIASRMEKMNGYLEAGLD---------DVRFIGICGMGGIGKTTLAKVLYNTL   73 (216)
Q Consensus        25 ~~~~vgR~~~~~~l~~~l~~~~~---------~~~~i~I~G~~GiGKTtL~~~~~~~~   73 (216)
                      .+.++|.+...+.+...+..+..         ....+.++|++|+|||+||+.++...
T Consensus       294 ~~~I~G~e~vk~al~~~l~~g~~~~~~~~~~r~~~~vLL~GppGtGKT~LAr~la~~~  351 (595)
T 3f9v_A          294 APSIYGHWELKEALALALFGGVPKVLEDTRIRGDIHILIIGDPGTAKSQMLQFISRVA  351 (595)
T ss_dssp             SSTTSCCHHHHHHHTTTTTCCCCEETTTTEECCSCCEEEEESSCCTHHHHHHSSSTTC
T ss_pred             cchhcChHHHHHHHHHHHhCCCcccccCCCcCCCcceEEECCCchHHHHHHHHHHHhC
Confidence            45689999876666544443210         11279999999999999999998754

>2gks_A Bifunctional SAT/APS kinase; transferase, sulfurylase; HET: ADP; 2.31A {Aquifex aeolicus}

Probab=96.71  E-value=0.0025  Score=54.04  Aligned_cols=48  Identities=17%  Similarity=0.149  Sum_probs=34.1

Q ss_pred             cccchhHHHHHHHHHhcCCCCeeEEEEEecCCCcHHHHHHHHHHHhcC
Q 039455           28 LVGIASRMEKMNGYLEAGLDDVRFIGICGMGGIGKTTLAKVLYNTLKD   75 (216)
Q Consensus        28 ~vgR~~~~~~l~~~l~~~~~~~~~i~I~G~~GiGKTtL~~~~~~~~~~   75 (216)
                      .+-|-+..+.+.+...........|+++|++|+||||+++.+...+..
T Consensus       351 ~~~r~eV~~~lr~~~~~~~~~~~~I~l~G~~GsGKSTia~~La~~L~~  398 (546)
T 2gks_A          351 WFTRPEVAEILAETYVPKHKQGFCVWLTGLPCAGKSTIAEILATMLQA  398 (546)
T ss_dssp             TTSCHHHHHHHHHHSCCGGGCCEEEEEECSTTSSHHHHHHHHHHHHHH
T ss_pred             cccchhHHHHHHHhhccccccceEEEccCCCCCCHHHHHHHHHHHhhh
Confidence            445555555566654222234578999999999999999999987643

>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*

Probab=96.71  E-value=0.0014  Score=45.88  Aligned_cols=25  Identities=16%  Similarity=0.294  Sum_probs=21.7

Q ss_pred             CeeEEEEEecCCCcHHHHHHHHHHH
Q 039455           48 DVRFIGICGMGGIGKTTLAKVLYNT   72 (216)
Q Consensus        48 ~~~~i~I~G~~GiGKTtL~~~~~~~   72 (216)
                      ..-.|+|.|++|+|||||+..+.+.
T Consensus         4 ~~~~i~v~G~~~~GKssl~~~l~~~   28 (168)
T 1z2a_A            4 VAIKMVVVGNGAVGKSSMIQRYCKG   28 (168)
T ss_dssp             CEEEEEEECSTTSSHHHHHHHHHHC
T ss_pred             eeEEEEEECcCCCCHHHHHHHHHcC
Confidence            3457899999999999999999874

>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}

Probab=96.71  E-value=0.0016  Score=48.69  Aligned_cols=32  Identities=16%  Similarity=-0.070  Sum_probs=25.0

Q ss_pred             eEEEEEecCCCcHHHHHHHHHHHhcCCCCceE
Q 039455           50 RFIGICGMGGIGKTTLAKVLYNTLKDQFEASS   81 (216)
Q Consensus        50 ~~i~I~G~~GiGKTtL~~~~~~~~~~~~~~~~   81 (216)
                      -.|++.|++|+||||++..++..+......+.
T Consensus         7 l~I~~~~kgGvGKTt~a~~la~~l~~~G~~V~   38 (228)
T 2r8r_A            7 LKVFLGAAPGVGKTYAMLQAAHAQLRQGVRVM   38 (228)
T ss_dssp             EEEEEESSTTSSHHHHHHHHHHHHHHTTCCEE
T ss_pred             EEEEEECCCCCcHHHHHHHHHHHHHHCCCCEE
Confidence            56899999999999999998887655433333

>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*

Probab=96.71  E-value=0.0012  Score=48.60  Aligned_cols=24  Identities=29%  Similarity=0.365  Sum_probs=21.1

Q ss_pred             eEEEEEecCCCcHHHHHHHHHHHh
Q 039455           50 RFIGICGMGGIGKTTLAKVLYNTL   73 (216)
Q Consensus        50 ~~i~I~G~~GiGKTtL~~~~~~~~   73 (216)
                      ...+|+|++|+||||++..+..-+
T Consensus        24 ~~~~I~G~NgsGKStil~ai~~~l   47 (203)
T 3qks_A           24 GINLIIGQNGSGKSSLLDAILVGL   47 (203)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             CeEEEEcCCCCCHHHHHHHHHHHh
Confidence            689999999999999999987543

>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*

Probab=96.68  E-value=0.003  Score=48.47  Aligned_cols=31  Identities=23%  Similarity=0.337  Sum_probs=24.7

Q ss_pred             HhcCCCCeeEEEEEecCCCcHHHHHHHHHHH
Q 039455           42 LEAGLDDVRFIGICGMGGIGKTTLAKVLYNT   72 (216)
Q Consensus        42 l~~~~~~~~~i~I~G~~GiGKTtL~~~~~~~   72 (216)
                      +.........|+++|.+|+|||||+..+.+.
T Consensus        32 ~~~~~~~~~~I~vvG~~g~GKSSLin~l~~~   62 (270)
T 1h65_A           32 LKQEDVNSLTILVMGKGGVGKSSTVNSIIGE   62 (270)
T ss_dssp             HHHTTCCEEEEEEEESTTSSHHHHHHHHHTS
T ss_pred             HhhcCCCCeEEEEECCCCCCHHHHHHHHhCC
Confidence            3333345678999999999999999999863

>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*

Probab=96.68  E-value=0.0018  Score=61.33  Aligned_cols=100  Identities=16%  Similarity=0.096  Sum_probs=0.0

Q ss_pred             HHHHHHHh-cCCCCeeEEEEEecCCCcHHHHHHHHHHHhcCCCCceEeeccccccccccCchHHHHHHHHHHHhhccccc
Q 039455           36 EKMNGYLE-AGLDDVRFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLANVREVSVTRGLVPLQEQLLSEVLMERNLII  114 (216)
Q Consensus        36 ~~l~~~l~-~~~~~~~~i~I~G~~GiGKTtL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~  114 (216)
                      ..|...+. .+-+.+.++.|.|++|+|||||+.+++......-..+.|++    ......... ...+--.+..-.-...
T Consensus       369 ~~LD~lLg~GGl~~G~lilI~G~pGsGKTtLaLq~a~~~~~~G~~vlyis----~E~s~~~~~-a~~lGvd~~~L~i~~~  443 (1706)
T 3cmw_A          369 LSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFID----AEHALDPIY-ARKLGVDIDNLLCSQP  443 (1706)
T ss_dssp             HHHHHHTSSSSEETTSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEC----TTSCCCHHH-HHHTTCCGGGCEEECC
T ss_pred             HHHHHHhccCCcCCCcEEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEE----ccCchHHHH-HHHcCCCHHHeEEcCC


Q ss_pred             cchhhhHHHHHHHh-CCceEEEEEeCC
Q 039455          115 WDVHKGINLIRWRL-CRKRVLVVLDDV  140 (216)
Q Consensus       115 ~~~~~~~~~l~~~l-~~~~~llvlDd~  140 (216)
                      .+.+.....+.... ..+.-+||+|-+
T Consensus       444 ~~~e~~l~~l~~lv~~~~~~lVVIDSL  470 (1706)
T 3cmw_A          444 DTGEQALEICDALARSGAVDVIVVDSV  470 (1706)
T ss_dssp             SSHHHHHHHHHHHHHHTCCSEEEESCS
T ss_pred             CCHHHHHHHHHHHHHhcCCCEEEECCH

>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*

Probab=96.67  E-value=0.0011  Score=53.25  Aligned_cols=51  Identities=10%  Similarity=0.167  Sum_probs=32.7

Q ss_pred             CceEEEEEeCCCC------HHHHHHhhcCCCCCCCCcEEEEEeCCchhhhccCCcceEEec
Q 039455          130 RKRVLVVLDDVDQ------LEQLQALAGNHDWFGFGSRIIITTRDEHVLKGHGVTNIYKVR  184 (216)
Q Consensus       130 ~~~~llvlDd~~~------~~~~~~l~~~~~~~~~~~~il~tsr~~~~~~~~~~~~~~~l~  184 (216)
                      .++-++++|+.-.      ...+..++..+.  ..+..||++||+.++...  ++..+.+.
T Consensus       302 ~~p~~lllDEpt~~LD~~~~~~~~~~l~~l~--~~g~tvi~itH~~~~~~~--~d~~~~l~  358 (365)
T 3qf7_A          302 GRLDAFFIDEGFSSLDTENKEKIASVLKELE--RLNKVIVFITHDREFSEA--FDRKLRIT  358 (365)
T ss_dssp             TTCCEEEEESCCTTSCHHHHHHHHHHHHGGG--GSSSEEEEEESCHHHHTT--CSCEEEEE
T ss_pred             CCCCEEEEeCCCccCCHHHHHHHHHHHHHHH--hCCCEEEEEecchHHHHh--CCEEEEEE
Confidence            6788999998732      233444444443  347889999999887433  45555443

>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*

Probab=96.67  E-value=0.0016  Score=46.65  Aligned_cols=26  Identities=38%  Similarity=0.391  Sum_probs=22.3

Q ss_pred             CCeeEEEEEecCCCcHHHHHHHHHHH
Q 039455           47 DDVRFIGICGMGGIGKTTLAKVLYNT   72 (216)
Q Consensus        47 ~~~~~i~I~G~~GiGKTtL~~~~~~~   72 (216)
                      .....|+|+|++|+|||||+..+.+.
T Consensus        14 ~~~~ki~ivG~~~vGKSsL~~~l~~~   39 (181)
T 1fzq_A           14 DQEVRILLLGLDNAGKTTLLKQLASE   39 (181)
T ss_dssp             SSCEEEEEEESTTSSHHHHHHHHCCS
T ss_pred             CCceEEEEECCCCCCHHHHHHHHhcC
Confidence            34578999999999999999998753

>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}

Probab=96.66  E-value=0.0013  Score=46.36  Aligned_cols=23  Identities=30%  Similarity=0.463  Sum_probs=20.8

Q ss_pred             eeEEEEEecCCCcHHHHHHHHHH
Q 039455           49 VRFIGICGMGGIGKTTLAKVLYN   71 (216)
Q Consensus        49 ~~~i~I~G~~GiGKTtL~~~~~~   71 (216)
                      ...|+|.|.+|+|||||++.+.+
T Consensus         4 ~~ki~i~G~~~vGKSsl~~~l~~   26 (175)
T 2nzj_A            4 LYRVVLLGDPGVGKTSLASLFAG   26 (175)
T ss_dssp             EEEEEEECCTTSSHHHHHHHHHC
T ss_pred             EEEEEEECCCCccHHHHHHHHhc
Confidence            46799999999999999999975

>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*

Probab=96.64  E-value=0.0033  Score=48.04  Aligned_cols=36  Identities=22%  Similarity=0.327  Sum_probs=27.0

Q ss_pred             HHHHHHhcCCCCeeEEEEEecCCCcHHHHHHHHHHH
Q 039455           37 KMNGYLEAGLDDVRFIGICGMGGIGKTTLAKVLYNT   72 (216)
Q Consensus        37 ~l~~~l~~~~~~~~~i~I~G~~GiGKTtL~~~~~~~   72 (216)
                      .+.+.+.........|+|.|.+|+|||||+..+.+.
T Consensus        24 ~~~~~~~~~~~~~~~I~lvG~~g~GKSSLin~l~~~   59 (262)
T 3def_A           24 EFFGKLKQKDMNSMTVLVLGKGGVGKSSTVNSLIGE   59 (262)
T ss_dssp             HHHHHHHHTTCCEEEEEEEECTTSSHHHHHHHHHTS
T ss_pred             HHHHHHhhccCCCcEEEEECCCCCCHHHHHHHHhCC
Confidence            333334443345678999999999999999999873

>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*

Probab=96.64  E-value=0.002  Score=45.68  Aligned_cols=26  Identities=23%  Similarity=0.500  Sum_probs=22.7

Q ss_pred             CCeeEEEEEecCCCcHHHHHHHHHHH
Q 039455           47 DDVRFIGICGMGGIGKTTLAKVLYNT   72 (216)
Q Consensus        47 ~~~~~i~I~G~~GiGKTtL~~~~~~~   72 (216)
                      .....|+|.|.+|+|||||+..+.+.
T Consensus         7 ~~~~~i~v~G~~~~GKssli~~l~~~   32 (181)
T 2fn4_A            7 SETHKLVVVGGGGVGKSALTIQFIQS   32 (181)
T ss_dssp             SCEEEEEEEECTTSSHHHHHHHHHHS
T ss_pred             CCceEEEEECCCCCCHHHHHHHHHhC
Confidence            34578999999999999999999874

>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}

Probab=96.64  E-value=0.0021  Score=61.79  Aligned_cols=49  Identities=24%  Similarity=0.291  Sum_probs=36.3

Q ss_pred             HHHHHHHh-cCCCCeeEEEEEecCCCcHHHHHHHHHHHhcCCCCceEeec
Q 039455           36 EKMNGYLE-AGLDDVRFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLA   84 (216)
Q Consensus        36 ~~l~~~l~-~~~~~~~~i~I~G~~GiGKTtL~~~~~~~~~~~~~~~~~~~   84 (216)
                      ..|...+. .+-+.+.++.|.|++|+|||||+..++......-..+.|++
T Consensus       369 ~~LD~lLG~GGl~~G~lilI~G~pGsGKTtLaLqia~~~a~~G~~vlyis  418 (2050)
T 3cmu_A          369 LSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFID  418 (2050)
T ss_dssp             HHHHHHHSSSSEETTSEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEC
T ss_pred             HHHHHHhccCCccCCcEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEEE
Confidence            34444444 33345689999999999999999999987765555677776

>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*

Probab=96.63  E-value=0.00098  Score=52.16  Aligned_cols=22  Identities=32%  Similarity=0.520  Sum_probs=19.6

Q ss_pred             eEEEEEecCCCcHHHHHHHHHH
Q 039455           50 RFIGICGMGGIGKTTLAKVLYN   71 (216)
Q Consensus        50 ~~i~I~G~~GiGKTtL~~~~~~   71 (216)
                      -.|+|+|++|+|||||++.++.
T Consensus        19 ~~I~lvG~nG~GKSTLl~~L~g   40 (301)
T 2qnr_A           19 FTLMVVGESGLGKSTLINSLFL   40 (301)
T ss_dssp             EEEEEEEETTSSHHHHHHHHHC
T ss_pred             EEEEEECCCCCCHHHHHHHHhC
Confidence            4669999999999999999775

>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*

Probab=96.62  E-value=0.0013  Score=46.59  Aligned_cols=24  Identities=29%  Similarity=0.314  Sum_probs=21.6

Q ss_pred             CeeEEEEEecCCCcHHHHHHHHHH
Q 039455           48 DVRFIGICGMGGIGKTTLAKVLYN   71 (216)
Q Consensus        48 ~~~~i~I~G~~GiGKTtL~~~~~~   71 (216)
                      +...|+|.|.+|+|||||+..+.+
T Consensus         7 ~~~~i~v~G~~~~GKssl~~~l~~   30 (178)
T 2lkc_A            7 RPPVVTIMGHVDHGKTTLLDAIRH   30 (178)
T ss_dssp             CCCEEEEESCTTTTHHHHHHHHHT
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhC
Confidence            457899999999999999999976

>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*

Probab=96.62  E-value=0.0016  Score=47.66  Aligned_cols=24  Identities=25%  Similarity=0.250  Sum_probs=21.0

Q ss_pred             CeeEEEEEecCCCcHHHHHHHHHH
Q 039455           48 DVRFIGICGMGGIGKTTLAKVLYN   71 (216)
Q Consensus        48 ~~~~i~I~G~~GiGKTtL~~~~~~   71 (216)
                      +.-.|+|+|.+|+|||||+..+..
T Consensus        29 ~~~ki~vvG~~~~GKSsLi~~l~~   52 (204)
T 4gzl_A           29 QAIKCVVVGDGAVGKTCLLISYTT   52 (204)
T ss_dssp             -CEEEEEEESTTSSHHHHHHHHHH
T ss_pred             CeEEEEEECcCCCCHHHHHHHHHh
Confidence            347899999999999999999886

>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*

Probab=96.62  E-value=0.0013  Score=45.87  Aligned_cols=23  Identities=26%  Similarity=0.456  Sum_probs=20.5

Q ss_pred             eEEEEEecCCCcHHHHHHHHHHH
Q 039455           50 RFIGICGMGGIGKTTLAKVLYNT   72 (216)
Q Consensus        50 ~~i~I~G~~GiGKTtL~~~~~~~   72 (216)
                      -.|+|.|++|+|||||+..+.+.
T Consensus         4 ~~i~v~G~~~~GKSsli~~l~~~   26 (167)
T 1kao_A            4 YKVVVLGSGGVGKSALTVQFVTG   26 (167)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHS
T ss_pred             EEEEEECCCCCCHHHHHHHHHcC
Confidence            46899999999999999998863

>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*

Probab=96.61  E-value=0.002  Score=44.88  Aligned_cols=24  Identities=25%  Similarity=0.487  Sum_probs=21.2

Q ss_pred             eeEEEEEecCCCcHHHHHHHHHHH
Q 039455           49 VRFIGICGMGGIGKTTLAKVLYNT   72 (216)
Q Consensus        49 ~~~i~I~G~~GiGKTtL~~~~~~~   72 (216)
                      ...|+|.|.+|+|||||+..+.+.
T Consensus         4 ~~~i~v~G~~~~GKssl~~~l~~~   27 (168)
T 1u8z_A            4 LHKVIMVGSGGVGKSALTLQFMYD   27 (168)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred             eEEEEEECCCCCCHHHHHHHHHhC
Confidence            357899999999999999999863

>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*

Probab=96.61  E-value=0.0016  Score=49.16  Aligned_cols=29  Identities=38%  Similarity=0.644  Sum_probs=25.4

Q ss_pred             CeeEEEEEecCCCcHHHHHHHHHHHhcCC
Q 039455           48 DVRFIGICGMGGIGKTTLAKVLYNTLKDQ   76 (216)
Q Consensus        48 ~~~~i~I~G~~GiGKTtL~~~~~~~~~~~   76 (216)
                      .+..|+|.|++|+||||+++.++..+...
T Consensus        26 ~~~~i~~eG~~GsGKsT~~~~l~~~l~~~   54 (236)
T 3lv8_A           26 NAKFIVIEGLEGAGKSTAIQVVVETLQQN   54 (236)
T ss_dssp             CCCEEEEEESTTSCHHHHHHHHHHHHHHT
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHHhc
Confidence            45799999999999999999999877643

>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*

Probab=96.60  E-value=0.0013  Score=46.11  Aligned_cols=24  Identities=25%  Similarity=0.288  Sum_probs=21.3

Q ss_pred             eeEEEEEecCCCcHHHHHHHHHHH
Q 039455           49 VRFIGICGMGGIGKTTLAKVLYNT   72 (216)
Q Consensus        49 ~~~i~I~G~~GiGKTtL~~~~~~~   72 (216)
                      .-.|+|+|.+|+|||||+..+.+.
T Consensus         6 ~~~i~v~G~~~~GKssli~~l~~~   29 (170)
T 1z08_A            6 SFKVVLLGEGCVGKTSLVLRYCEN   29 (170)
T ss_dssp             EEEEEEECCTTSCHHHHHHHHHHC
T ss_pred             ceEEEEECcCCCCHHHHHHHHHcC
Confidence            457899999999999999999864

>1m8p_A Sulfate adenylyltransferase; rossmann fold, phosphosulfate binding, T-state; HET: PPS; 2.60A {Penicillium chrysogenum} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1i2d_A*

Probab=96.59  E-value=0.0026  Score=54.25  Aligned_cols=28  Identities=29%  Similarity=0.247  Sum_probs=24.8

Q ss_pred             CCeeEEEEEecCCCcHHHHHHHHHHHhc
Q 039455           47 DDVRFIGICGMGGIGKTTLAKVLYNTLK   74 (216)
Q Consensus        47 ~~~~~i~I~G~~GiGKTtL~~~~~~~~~   74 (216)
                      ..+..|+|+|++|+||||+++.+...+.
T Consensus       394 q~~~~I~l~GlsGSGKSTiA~~La~~L~  421 (573)
T 1m8p_A          394 TQGFTIFLTGYMNSGKDAIARALQVTLN  421 (573)
T ss_dssp             TCCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred             ccceEEEeecCCCCCHHHHHHHHHHHhc
Confidence            4567899999999999999999998765

>3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B

Probab=96.59  E-value=0.0014  Score=52.11  Aligned_cols=57  Identities=14%  Similarity=0.254  Sum_probs=35.4

Q ss_pred             HHHHhCCceEEEEEeCCCCH------HHHHHhhcCCCCCCCCcEEEEEeCCchhhhccCCcceEEec
Q 039455          124 IRWRLCRKRVLVVLDDVDQL------EQLQALAGNHDWFGFGSRIIITTRDEHVLKGHGVTNIYKVR  184 (216)
Q Consensus       124 l~~~l~~~~~llvlDd~~~~------~~~~~l~~~~~~~~~~~~il~tsr~~~~~~~~~~~~~~~l~  184 (216)
                      +...+..++-++++|+.-..      ..+..++..+.  ..+..||++||+.++...  ++..+.+.
T Consensus       265 ~a~~l~~~p~~lllDEp~~~LD~~~~~~l~~~l~~~~--~~~~~vi~~sH~~~~~~~--~d~~~~l~  327 (339)
T 3qkt_A          265 MSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYL--KKIPQVILVSHDEELKDA--ADHVIRIS  327 (339)
T ss_dssp             HHHHTTTTTCEEEEECCCTTCCHHHHHHHHHHHHHTG--GGSSEEEEEESCGGGGGG--CSEEEEEE
T ss_pred             HHHHhcCCCCEEEEECCCCCCCHHHHHHHHHHHHHHH--hcCCEEEEEEChHHHHHh--CCEEEEEE
Confidence            45566778889999988421      23333333332  345689999999776543  45555554

>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=96.59  E-value=0.0014  Score=45.94  Aligned_cols=23  Identities=13%  Similarity=0.258  Sum_probs=20.4

Q ss_pred             eEEEEEecCCCcHHHHHHHHHHH
Q 039455           50 RFIGICGMGGIGKTTLAKVLYNT   72 (216)
Q Consensus        50 ~~i~I~G~~GiGKTtL~~~~~~~   72 (216)
                      -.|+|.|++|+|||||+..+.+.
T Consensus         4 ~~i~v~G~~~~GKssli~~l~~~   26 (170)
T 1ek0_A            4 IKLVLLGEAAVGKSSIVLRFVSN   26 (170)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEEECCCCCCHHHHHHHHhcC
Confidence            46899999999999999999863

>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}

Probab=96.59  E-value=0.0012  Score=48.88  Aligned_cols=24  Identities=33%  Similarity=0.385  Sum_probs=21.6

Q ss_pred             eEEEEEecCCCcHHHHHHHHHHHh
Q 039455           50 RFIGICGMGGIGKTTLAKVLYNTL   73 (216)
Q Consensus        50 ~~i~I~G~~GiGKTtL~~~~~~~~   73 (216)
                      ..|+|+|+.|+||||+++.++..+
T Consensus         4 ~~i~i~G~~gsGkst~~~~l~~~~   27 (219)
T 2h92_A            4 INIALDGPAAAGKSTIAKRVASEL   27 (219)
T ss_dssp             CCEEEECCTTSSHHHHHHHHHHHT
T ss_pred             eEEEEECCCCCCHHHHHHHHHHhc
Confidence            479999999999999999998764

>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*

Probab=96.59  E-value=0.0014  Score=45.98  Aligned_cols=23  Identities=17%  Similarity=0.296  Sum_probs=20.9

Q ss_pred             eEEEEEecCCCcHHHHHHHHHHH
Q 039455           50 RFIGICGMGGIGKTTLAKVLYNT   72 (216)
Q Consensus        50 ~~i~I~G~~GiGKTtL~~~~~~~   72 (216)
                      -.|+|.|++|+|||||++.+.+.
T Consensus         7 ~~i~v~G~~~~GKSsli~~l~~~   29 (170)
T 1z0j_A            7 LKVCLLGDTGVGKSSIMWRFVED   29 (170)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHS
T ss_pred             eEEEEECcCCCCHHHHHHHHHcC
Confidence            57899999999999999999874

>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=96.59  E-value=0.0016  Score=47.95  Aligned_cols=25  Identities=32%  Similarity=0.254  Sum_probs=22.3

Q ss_pred             CeeEEEEEecCCCcHHHHHHHHHHH
Q 039455           48 DVRFIGICGMGGIGKTTLAKVLYNT   72 (216)
Q Consensus        48 ~~~~i~I~G~~GiGKTtL~~~~~~~   72 (216)
                      ....|+|+|++|+|||||+..+.+.
T Consensus        11 ~~~~i~~~G~~g~GKTsl~~~l~~~   35 (218)
T 1nrj_B           11 YQPSIIIAGPQNSGKTSLLTLLTTD   35 (218)
T ss_dssp             CCCEEEEECSTTSSHHHHHHHHHHS
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhcC
Confidence            4578999999999999999999874

>3fwy_A Light-independent protochlorophyllide reductase I ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2}

Probab=96.58  E-value=0.0023  Score=50.37  Aligned_cols=37  Identities=22%  Similarity=0.300  Sum_probs=28.8

Q ss_pred             CeeEEEEEecCCCcHHHHHHHHHHHhcCCCCceEeec
Q 039455           48 DVRFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLA   84 (216)
Q Consensus        48 ~~~~i~I~G~~GiGKTtL~~~~~~~~~~~~~~~~~~~   84 (216)
                      ..++|+|+|-||+||||++--++..+.+.-..+..++
T Consensus        47 ~aKVIAIaGKGGVGKTTtavNLA~aLA~~GkkVllID   83 (314)
T 3fwy_A           47 GAKVFAVYGKGGIGKSTTSSNLSAAFSILGKRVLQIG   83 (314)
T ss_dssp             CCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred             CceEEEEECCCccCHHHHHHHHHHHHHHCCCeEEEEe
Confidence            4689999999999999999988876655444455553

>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A

Probab=96.58  E-value=0.0038  Score=52.28  Aligned_cols=29  Identities=28%  Similarity=0.320  Sum_probs=23.7

Q ss_pred             CeeEEEEEecCCCcHHHHHHHHHHHhcCC
Q 039455           48 DVRFIGICGMGGIGKTTLAKVLYNTLKDQ   76 (216)
Q Consensus        48 ~~~~i~I~G~~GiGKTtL~~~~~~~~~~~   76 (216)
                      ...+|+|+|.+|+||||++..++..+...
T Consensus       100 ~~~vI~ivG~~GvGKTTl~~kLA~~l~~~  128 (504)
T 2j37_W          100 KQNVIMFVGLQGSGKTTTCSKLAYYYQRK  128 (504)
T ss_dssp             --EEEEEECSTTSSHHHHHHHHHHHHHHT
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHHhC
Confidence            35689999999999999999999766543

>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A

Probab=96.58  E-value=0.002  Score=45.10  Aligned_cols=23  Identities=26%  Similarity=0.316  Sum_probs=20.6

Q ss_pred             eEEEEEecCCCcHHHHHHHHHHH
Q 039455           50 RFIGICGMGGIGKTTLAKVLYNT   72 (216)
Q Consensus        50 ~~i~I~G~~GiGKTtL~~~~~~~   72 (216)
                      -.|+|+|++|+|||||+..+.+.
T Consensus         4 ~~i~v~G~~~~GKssli~~l~~~   26 (170)
T 1g16_A            4 MKILLIGDSGVGKSCLLVRFVED   26 (170)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHC
T ss_pred             eEEEEECcCCCCHHHHHHHHHhC
Confidence            56899999999999999999863

>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*

Probab=96.58  E-value=0.0015  Score=47.11  Aligned_cols=25  Identities=24%  Similarity=0.460  Sum_probs=22.1

Q ss_pred             CeeEEEEEecCCCcHHHHHHHHHHH
Q 039455           48 DVRFIGICGMGGIGKTTLAKVLYNT   72 (216)
Q Consensus        48 ~~~~i~I~G~~GiGKTtL~~~~~~~   72 (216)
                      ....|+|+|.+|+|||||+..+.+.
T Consensus        22 ~~~~i~v~G~~~~GKSsli~~l~~~   46 (195)
T 1svi_A           22 GLPEIALAGRSNVGKSSFINSLINR   46 (195)
T ss_dssp             CCCEEEEEEBTTSSHHHHHHHHHTC
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCC
Confidence            4578999999999999999999863

>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}

Probab=96.57  E-value=0.002  Score=48.15  Aligned_cols=29  Identities=34%  Similarity=0.494  Sum_probs=25.6

Q ss_pred             CCeeEEEEEecCCCcHHHHHHHHHHHhcC
Q 039455           47 DDVRFIGICGMGGIGKTTLAKVLYNTLKD   75 (216)
Q Consensus        47 ~~~~~i~I~G~~GiGKTtL~~~~~~~~~~   75 (216)
                      ..+..|+|.|+.|+||||+++.+...+..
T Consensus        19 ~~~~~i~~~G~~g~GKst~~~~l~~~l~~   47 (223)
T 3ld9_A           19 PGSMFITFEGIDGSGKTTQSHLLAEYLSE   47 (223)
T ss_dssp             CCCEEEEEECSTTSSHHHHHHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHHhh
Confidence            35689999999999999999999987764

>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*

Probab=96.56  E-value=0.0014  Score=46.30  Aligned_cols=24  Identities=25%  Similarity=0.416  Sum_probs=21.3

Q ss_pred             eeEEEEEecCCCcHHHHHHHHHHH
Q 039455           49 VRFIGICGMGGIGKTTLAKVLYNT   72 (216)
Q Consensus        49 ~~~i~I~G~~GiGKTtL~~~~~~~   72 (216)
                      ...|+|.|++|+|||||+..+.+.
T Consensus         7 ~~~i~v~G~~~~GKSsli~~l~~~   30 (177)
T 1wms_A            7 LFKVILLGDGGVGKSSLMNRYVTN   30 (177)
T ss_dssp             EEEEEEECCTTSSHHHHHHHHHHS
T ss_pred             eeEEEEECCCCCCHHHHHHHHHcC
Confidence            457899999999999999999863

>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*

Probab=96.56  E-value=0.002  Score=45.70  Aligned_cols=25  Identities=32%  Similarity=0.441  Sum_probs=22.0

Q ss_pred             CeeEEEEEecCCCcHHHHHHHHHHH
Q 039455           48 DVRFIGICGMGGIGKTTLAKVLYNT   72 (216)
Q Consensus        48 ~~~~i~I~G~~GiGKTtL~~~~~~~   72 (216)
                      ....|+|+|++|+|||||+..+.+.
T Consensus         7 ~~~~i~v~G~~~~GKSsli~~l~~~   31 (182)
T 1ky3_A            7 NILKVIILGDSGVGKTSLMHRYVND   31 (182)
T ss_dssp             CEEEEEEECCTTSSHHHHHHHHHHS
T ss_pred             ceEEEEEECCCCCCHHHHHHHHHhC
Confidence            4568999999999999999999863

>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B

Probab=96.56  E-value=0.00089  Score=55.09  Aligned_cols=28  Identities=32%  Similarity=0.412  Sum_probs=24.1

Q ss_pred             eeEEEEEecCCCcHHHHHHHHHHHhcCC
Q 039455           49 VRFIGICGMGGIGKTTLAKVLYNTLKDQ   76 (216)
Q Consensus        49 ~~~i~I~G~~GiGKTtL~~~~~~~~~~~   76 (216)
                      ..+|+|+|++|+||||++..++..+...
T Consensus        99 ~~vI~ivG~~GvGKTTla~~La~~l~~~  126 (432)
T 2v3c_C           99 QNVILLVGIQGSGKTTTAAKLARYIQKR  126 (432)
T ss_dssp             CCCEEEECCSSSSTTHHHHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHHHHc
Confidence            4689999999999999999999876543

>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*

Probab=96.56  E-value=0.0015  Score=45.64  Aligned_cols=23  Identities=26%  Similarity=0.455  Sum_probs=20.5

Q ss_pred             eEEEEEecCCCcHHHHHHHHHHH
Q 039455           50 RFIGICGMGGIGKTTLAKVLYNT   72 (216)
Q Consensus        50 ~~i~I~G~~GiGKTtL~~~~~~~   72 (216)
                      -.|+|.|.+|+|||||++.+.+.
T Consensus         4 ~ki~v~G~~~~GKssli~~l~~~   26 (167)
T 1c1y_A            4 YKLVVLGSGGVGKSALTVQFVQG   26 (167)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHC
T ss_pred             eEEEEECCCCCCHHHHHHHHHcC
Confidence            46899999999999999999863

>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*

Probab=96.55  E-value=0.01  Score=50.67  Aligned_cols=27  Identities=26%  Similarity=0.398  Sum_probs=23.9

Q ss_pred             eEEEEEecCCCcHHHHHHHHHHHhcCC
Q 039455           50 RFIGICGMGGIGKTTLAKVLYNTLKDQ   76 (216)
Q Consensus        50 ~~i~I~G~~GiGKTtL~~~~~~~~~~~   76 (216)
                      +.++|+|++|+||||++..++..+...
T Consensus       205 ~~~~I~G~pGTGKTt~i~~l~~~l~~~  231 (574)
T 3e1s_A          205 RLVVLTGGPGTGKSTTTKAVADLAESL  231 (574)
T ss_dssp             SEEEEECCTTSCHHHHHHHHHHHHHHT
T ss_pred             CEEEEEcCCCCCHHHHHHHHHHHHHhc
Confidence            689999999999999999999876554

>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8

Probab=96.55  E-value=0.0018  Score=45.39  Aligned_cols=23  Identities=26%  Similarity=0.504  Sum_probs=20.6

Q ss_pred             eeEEEEEecCCCcHHHHHHHHHH
Q 039455           49 VRFIGICGMGGIGKTTLAKVLYN   71 (216)
Q Consensus        49 ~~~i~I~G~~GiGKTtL~~~~~~   71 (216)
                      .-.|+|.|.+|+|||||+..+.+
T Consensus         3 ~~~i~v~G~~~~GKssli~~l~~   25 (172)
T 2erx_A            3 DYRVAVFGAGGVGKSSLVLRFVK   25 (172)
T ss_dssp             EEEEEEECCTTSSHHHHHHHHHT
T ss_pred             ceEEEEECCCCCCHHHHHHHHHc
Confidence            35789999999999999999986

>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*

Probab=96.53  E-value=0.0016  Score=46.64  Aligned_cols=25  Identities=28%  Similarity=0.214  Sum_probs=21.8

Q ss_pred             CeeEEEEEecCCCcHHHHHHHHHHH
Q 039455           48 DVRFIGICGMGGIGKTTLAKVLYNT   72 (216)
Q Consensus        48 ~~~~i~I~G~~GiGKTtL~~~~~~~   72 (216)
                      ..-.|+|+|++|+|||||+..+.+.
T Consensus         6 ~~~ki~v~G~~~vGKSsli~~l~~~   30 (184)
T 1m7b_A            6 VKCKIVVVGDSQCGKTALLHVFAKD   30 (184)
T ss_dssp             CEEEEEEEESTTSSHHHHHHHHHHS
T ss_pred             eEEEEEEECCCCCCHHHHHHHHhcC
Confidence            3467899999999999999999874

>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...

Probab=96.53  E-value=0.0016  Score=45.44  Aligned_cols=22  Identities=32%  Similarity=0.282  Sum_probs=19.6

Q ss_pred             EEEEEecCCCcHHHHHHHHHHH
Q 039455           51 FIGICGMGGIGKTTLAKVLYNT   72 (216)
Q Consensus        51 ~i~I~G~~GiGKTtL~~~~~~~   72 (216)
                      .|+|.|.+|+|||||+..+...
T Consensus         2 ki~~~G~~~~GKssl~~~l~~~   23 (164)
T 1r8s_A            2 RILMVGLDAAGKTTILYKLKLG   23 (164)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHcC
Confidence            4789999999999999999763

>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A

Probab=96.53  E-value=0.0018  Score=46.52  Aligned_cols=25  Identities=24%  Similarity=0.428  Sum_probs=21.9

Q ss_pred             CeeEEEEEecCCCcHHHHHHHHHHH
Q 039455           48 DVRFIGICGMGGIGKTTLAKVLYNT   72 (216)
Q Consensus        48 ~~~~i~I~G~~GiGKTtL~~~~~~~   72 (216)
                      ....|+|.|.+|+|||||+..+.+.
T Consensus        22 ~~~~i~v~G~~~~GKSsli~~l~~~   46 (195)
T 3pqc_A           22 LKGEVAFVGRSNVGKSSLLNALFNR   46 (195)
T ss_dssp             TTCEEEEEEBTTSSHHHHHHHHHTS
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHcC
Confidence            3468999999999999999999874

>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*

Probab=96.52  E-value=0.0016  Score=46.82  Aligned_cols=24  Identities=29%  Similarity=0.490  Sum_probs=21.3

Q ss_pred             eeEEEEEecCCCcHHHHHHHHHHH
Q 039455           49 VRFIGICGMGGIGKTTLAKVLYNT   72 (216)
Q Consensus        49 ~~~i~I~G~~GiGKTtL~~~~~~~   72 (216)
                      .-.|+|+|.+|+|||||+..+...
T Consensus        21 ~~ki~vvG~~~~GKSsli~~l~~~   44 (190)
T 3con_A           21 EYKLVVVGAGGVGKSALTIQLIQN   44 (190)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred             eeEEEEECcCCCCHHHHHHHHHcC
Confidence            357899999999999999999864

>4b3f_X DNA-binding protein smubp-2; hydrolase, helicase; 2.50A {Homo sapiens} PDB: 4b3g_A

Probab=96.52  E-value=0.0038  Score=54.01  Aligned_cols=37  Identities=27%  Similarity=0.145  Sum_probs=25.7

Q ss_pred             hHHHHHHHHHhcCCCCeeEEEEEecCCCcHHHHHHHHHHHh
Q 039455           33 SRMEKMNGYLEAGLDDVRFIGICGMGGIGKTTLAKVLYNTL   73 (216)
Q Consensus        33 ~~~~~l~~~l~~~~~~~~~i~I~G~~GiGKTtL~~~~~~~~   73 (216)
                      ...+.+...|...    ...+|+||+|+|||+++.+++..+
T Consensus       193 ~Q~~AV~~al~~~----~~~lI~GPPGTGKT~ti~~~I~~l  229 (646)
T 4b3f_X          193 SQKEAVLFALSQK----ELAIIHGPPGTGKTTTVVEIILQA  229 (646)
T ss_dssp             HHHHHHHHHHHCS----SEEEEECCTTSCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhcCC----CceEEECCCCCCHHHHHHHHHHHH
Confidence            3445566666532    488999999999997766665543

>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*

Probab=96.52  E-value=0.0022  Score=45.03  Aligned_cols=24  Identities=38%  Similarity=0.317  Sum_probs=21.3

Q ss_pred             CeeEEEEEecCCCcHHHHHHHHHH
Q 039455           48 DVRFIGICGMGGIGKTTLAKVLYN   71 (216)
Q Consensus        48 ~~~~i~I~G~~GiGKTtL~~~~~~   71 (216)
                      ....|+|.|.+|+|||||+..+..
T Consensus         6 ~~~~i~v~G~~~~GKssl~~~l~~   29 (171)
T 1upt_A            6 REMRILILGLDGAGKTTILYRLQV   29 (171)
T ss_dssp             SCEEEEEECSTTSSHHHHHHHHHH
T ss_pred             CccEEEEECCCCCCHHHHHHHHhc
Confidence            346799999999999999999976

>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*

Probab=96.52  E-value=0.0015  Score=45.71  Aligned_cols=21  Identities=29%  Similarity=0.528  Sum_probs=19.0

Q ss_pred             EEEEEecCCCcHHHHHHHHHH
Q 039455           51 FIGICGMGGIGKTTLAKVLYN   71 (216)
Q Consensus        51 ~i~I~G~~GiGKTtL~~~~~~   71 (216)
                      .|+|.|.+|+|||||++.+.+
T Consensus         4 ki~~vG~~~~GKSsli~~l~~   24 (166)
T 3q72_A            4 KVLLLGAPGVGKSALARIFGG   24 (166)
T ss_dssp             EEEEEESTTSSHHHHHHHHCC
T ss_pred             EEEEECCCCCCHHHHHHHHcC
Confidence            589999999999999998864

>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0

Probab=96.51  E-value=0.0016  Score=46.80  Aligned_cols=25  Identities=24%  Similarity=0.244  Sum_probs=21.7

Q ss_pred             CeeEEEEEecCCCcHHHHHHHHHHH
Q 039455           48 DVRFIGICGMGGIGKTTLAKVLYNT   72 (216)
Q Consensus        48 ~~~~i~I~G~~GiGKTtL~~~~~~~   72 (216)
                      ..-.|+|.|.+|+|||||+..+...
T Consensus        19 ~~~ki~ivG~~~vGKSsL~~~~~~~   43 (184)
T 3ihw_A           19 PELKVGIVGNLSSGKSALVHRYLTG   43 (184)
T ss_dssp             CEEEEEEECCTTSCHHHHHHHHHHS
T ss_pred             CeeEEEEECCCCCCHHHHHHHHhcC
Confidence            4568999999999999999988763

>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*

Probab=96.50  E-value=0.0017  Score=46.89  Aligned_cols=24  Identities=33%  Similarity=0.365  Sum_probs=20.8

Q ss_pred             eeEEEEEecCCCcHHHHHHHHHHH
Q 039455           49 VRFIGICGMGGIGKTTLAKVLYNT   72 (216)
Q Consensus        49 ~~~i~I~G~~GiGKTtL~~~~~~~   72 (216)
                      ...|+|.|++|+|||||+..+.+.
T Consensus        23 ~~ki~~vG~~~vGKSsli~~l~~~   46 (190)
T 1m2o_B           23 HGKLLFLGLDNAGKTTLLHMLKND   46 (190)
T ss_dssp             -CEEEEEESTTSSHHHHHHHHHHS
T ss_pred             ccEEEEECCCCCCHHHHHHHHhcC
Confidence            357899999999999999999863

>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*

Probab=96.50  E-value=0.0044  Score=45.93  Aligned_cols=28  Identities=39%  Similarity=0.580  Sum_probs=24.7

Q ss_pred             eeEEEEEecCCCcHHHHHHHHHHHhcCC
Q 039455           49 VRFIGICGMGGIGKTTLAKVLYNTLKDQ   76 (216)
Q Consensus        49 ~~~i~I~G~~GiGKTtL~~~~~~~~~~~   76 (216)
                      +..|++.|+.|+||||+++.+...+...
T Consensus         3 g~~i~~eG~~gsGKsT~~~~l~~~l~~~   30 (213)
T 4tmk_A            3 SKYIVIEGLEGAGKTTARNVVVETLEQL   30 (213)
T ss_dssp             CCEEEEEECTTSCHHHHHHHHHHHHHHT
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHHHHc
Confidence            4689999999999999999999987654

>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*

Probab=96.50  E-value=0.0017  Score=45.42  Aligned_cols=23  Identities=17%  Similarity=0.232  Sum_probs=20.7

Q ss_pred             eeEEEEEecCCCcHHHHHHHHHH
Q 039455           49 VRFIGICGMGGIGKTTLAKVLYN   71 (216)
Q Consensus        49 ~~~i~I~G~~GiGKTtL~~~~~~   71 (216)
                      .-.|+|.|.+|+|||||+..+.+
T Consensus         6 ~~~i~v~G~~~~GKssli~~l~~   28 (170)
T 1r2q_A            6 QFKLVLLGESAVGKSSLVLRFVK   28 (170)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHH
T ss_pred             eEEEEEECCCCCCHHHHHHHHHc
Confidence            35789999999999999999986

>2orv_A Thymidine kinase; TP4A (P1-(5'-adenosyl)P4-(5'- (2'deoxythymidil))tetraphosphate, transferase; HET: 4TA; 2.30A {Homo sapiens} SCOP: c.37.1.24 g.39.1.14

Probab=96.50  E-value=0.0068  Score=45.34  Aligned_cols=108  Identities=9%  Similarity=-0.005  Sum_probs=52.9

Q ss_pred             CeeEEEEEecCCCcHHHHHHHHHHHhcCCCCceEeeccccccccccCchHHHHHHHHHHHhhcc-ccccchhhhHHHHHH
Q 039455           48 DVRFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLANVREVSVTRGLVPLQEQLLSEVLMERN-LIIWDVHKGINLIRW  126 (216)
Q Consensus        48 ~~~~i~I~G~~GiGKTtL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~~~~~~~~~~l~~  126 (216)
                      .+.+.+++|+-|+||||.+...+.++..+...+..+.-..+  .... .    .+...+..... ....+.......+  
T Consensus        18 ~g~l~v~~G~MgsGKTT~lL~~~~r~~~~g~kvli~kp~~D--~Ryg-~----~i~sr~G~~~~a~~i~~~~di~~~~--   88 (234)
T 2orv_A           18 RGQIQVILGPMFSGKSTELMRRVRRFQIAQYKCLVIKYAKD--TRYS-S----SFCTHDRNTMEALPACLLRDVAQEA--   88 (234)
T ss_dssp             CCEEEEEECCTTSCHHHHHHHHHHHHHTTTCCEEEEEETTC--CCC----------------CEEEEESSGGGGHHHH--
T ss_pred             ceEEEEEECCCCCcHHHHHHHHHHHHHHCCCeEEEEeecCC--ccch-H----HHHhhcCCeeEEEecCCHHHHHHHh--
Confidence            46899999999999998887777766554333333321111  0111 2    22222211111 1111222222222  


Q ss_pred             HhCCceEEEEEeCCCCHHHHHHhhcCCCCCCCCcEEEEEeCCc
Q 039455          127 RLCRKRVLVVLDDVDQLEQLQALAGNHDWFGFGSRIIITTRDE  169 (216)
Q Consensus       127 ~l~~~~~llvlDd~~~~~~~~~l~~~~~~~~~~~~il~tsr~~  169 (216)
                         +.--+|++|++.-...+.++...+.  ..+..+|+|.++.
T Consensus        89 ---~~~dvViIDEaQF~~~v~el~~~l~--~~gi~VI~~GL~~  126 (234)
T 2orv_A           89 ---LGVAVIGIDEGQFFPDIVEFCEAMA--NAGKTVIVAALDG  126 (234)
T ss_dssp             ---TTCSEEEESSGGGCTTHHHHHHHHH--HTTCEEEEECCSB
T ss_pred             ---ccCCEEEEEchhhhhhHHHHHHHHH--hCCCEEEEEeccc
Confidence               2334999999853322333333322  2467899999984

>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8

Probab=96.49  E-value=0.0014  Score=46.92  Aligned_cols=22  Identities=32%  Similarity=0.351  Sum_probs=19.8

Q ss_pred             EEEEEecCCCcHHHHHHHHHHH
Q 039455           51 FIGICGMGGIGKTTLAKVLYNT   72 (216)
Q Consensus        51 ~i~I~G~~GiGKTtL~~~~~~~   72 (216)
                      .|+|.|.+|+|||||+..+.+.
T Consensus         3 ki~v~G~~~~GKSsli~~l~~~   24 (190)
T 2cxx_A            3 TIIFAGRSNVGKSTLIYRLTGK   24 (190)
T ss_dssp             EEEEEEBTTSSHHHHHHHHHSC
T ss_pred             EEEEECCCCCCHHHHHHHHhCc
Confidence            5889999999999999999863

>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*

Probab=96.49  E-value=0.0016  Score=45.64  Aligned_cols=22  Identities=32%  Similarity=0.427  Sum_probs=19.6

Q ss_pred             eEEEEEecCCCcHHHHHHHHHH
Q 039455           50 RFIGICGMGGIGKTTLAKVLYN   71 (216)
Q Consensus        50 ~~i~I~G~~GiGKTtL~~~~~~   71 (216)
                      -.|+|.|++|+|||||+..+.+
T Consensus         3 ~ki~ivG~~~~GKSsli~~l~~   24 (169)
T 3q85_A            3 FKVMLVGESGVGKSTLAGTFGG   24 (169)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHC
T ss_pred             EEEEEECCCCCCHHHHHHHHHh
Confidence            4689999999999999999864

>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*

Probab=96.48  E-value=0.0018  Score=45.74  Aligned_cols=22  Identities=23%  Similarity=0.231  Sum_probs=20.2

Q ss_pred             eEEEEEecCCCcHHHHHHHHHH
Q 039455           50 RFIGICGMGGIGKTTLAKVLYN   71 (216)
Q Consensus        50 ~~i~I~G~~GiGKTtL~~~~~~   71 (216)
                      -.|+|+|.+|+|||||+..+.+
T Consensus        15 ~~i~v~G~~~~GKssli~~l~~   36 (179)
T 2y8e_A           15 FKLVFLGEQSVGKTSLITRFMY   36 (179)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHc
Confidence            5789999999999999999986

>2o5v_A DNA replication and repair protein RECF; ABC ATPase, walker A motif, P-loop, signature motif, replication/recombination complex; HET: DNA; 1.61A {Deinococcus radiodurans}

Probab=96.46  E-value=0.0021  Score=51.58  Aligned_cols=22  Identities=41%  Similarity=0.605  Sum_probs=20.5

Q ss_pred             eEEEEEecCCCcHHHHHHHHHH
Q 039455           50 RFIGICGMGGIGKTTLAKVLYN   71 (216)
Q Consensus        50 ~~i~I~G~~GiGKTtL~~~~~~   71 (216)
                      .+.+|+|++|+|||||++.++.
T Consensus        27 g~~~i~G~nG~GKttll~ai~~   48 (359)
T 2o5v_A           27 GVTGIYGENGAGKTNLLEAAYL   48 (359)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHH
T ss_pred             CeEEEECCCCCChhHHHHHHHH
Confidence            4999999999999999999985

>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8

Probab=96.46  E-value=0.00064  Score=53.31  Aligned_cols=25  Identities=24%  Similarity=0.418  Sum_probs=21.3

Q ss_pred             eeEEEEEecCCCcHHHHHHHHHHHh
Q 039455           49 VRFIGICGMGGIGKTTLAKVLYNTL   73 (216)
Q Consensus        49 ~~~i~I~G~~GiGKTtL~~~~~~~~   73 (216)
                      +..++|.|++|+|||||++.+....
T Consensus       173 G~~~~lvG~sG~GKSTLln~L~g~~  197 (307)
T 1t9h_A          173 DKTTVFAGQSGVGKSSLLNAISPEL  197 (307)
T ss_dssp             TSEEEEEESHHHHHHHHHHHHCC--
T ss_pred             CCEEEEECCCCCCHHHHHHHhcccc
Confidence            4799999999999999999997644

>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*

Probab=96.45  E-value=0.0018  Score=46.37  Aligned_cols=24  Identities=21%  Similarity=0.198  Sum_probs=21.4

Q ss_pred             eeEEEEEecCCCcHHHHHHHHHHH
Q 039455           49 VRFIGICGMGGIGKTTLAKVLYNT   72 (216)
Q Consensus        49 ~~~i~I~G~~GiGKTtL~~~~~~~   72 (216)
                      ...|+|+|.+|+|||||+..+...
T Consensus        11 ~~ki~v~G~~~~GKSsli~~l~~~   34 (195)
T 3bc1_A           11 LIKFLALGDSGVGKTSVLYQYTDG   34 (195)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred             eEEEEEECCCCCCHHHHHHHHhcC
Confidence            468999999999999999999863

>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*

Probab=96.45  E-value=0.0019  Score=46.07  Aligned_cols=25  Identities=20%  Similarity=0.206  Sum_probs=21.8

Q ss_pred             CeeEEEEEecCCCcHHHHHHHHHHH
Q 039455           48 DVRFIGICGMGGIGKTTLAKVLYNT   72 (216)
Q Consensus        48 ~~~~i~I~G~~GiGKTtL~~~~~~~   72 (216)
                      ....|+|.|++|+|||||++.+.+.
T Consensus         9 ~~~ki~v~G~~~~GKSsli~~l~~~   33 (186)
T 2bme_A            9 FLFKFLVIGNAGTGKSCLLHQFIEK   33 (186)
T ss_dssp             EEEEEEEEESTTSSHHHHHHHHHHS
T ss_pred             cceEEEEECCCCCCHHHHHHHHHcC
Confidence            3468999999999999999999863

>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*

Probab=96.44  E-value=0.0019  Score=45.65  Aligned_cols=25  Identities=24%  Similarity=0.203  Sum_probs=22.0

Q ss_pred             CeeEEEEEecCCCcHHHHHHHHHHH
Q 039455           48 DVRFIGICGMGGIGKTTLAKVLYNT   72 (216)
Q Consensus        48 ~~~~i~I~G~~GiGKTtL~~~~~~~   72 (216)
                      ....|+|+|.+|+|||||+..+.+.
T Consensus        14 ~~~~i~v~G~~~~GKSsli~~l~~~   38 (179)
T 1z0f_A           14 YIFKYIIIGDMGVGKSCLLHQFTEK   38 (179)
T ss_dssp             EEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred             cceEEEEECCCCCCHHHHHHHHHcC
Confidence            3568999999999999999999873

>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*

Probab=96.44  E-value=0.0019  Score=46.83  Aligned_cols=23  Identities=30%  Similarity=0.479  Sum_probs=20.6

Q ss_pred             eeEEEEEecCCCcHHHHHHHHHH
Q 039455           49 VRFIGICGMGGIGKTTLAKVLYN   71 (216)
Q Consensus        49 ~~~i~I~G~~GiGKTtL~~~~~~   71 (216)
                      .-.|+|+|.+|+|||||+..+.+
T Consensus         6 ~~kv~lvG~~~vGKSsL~~~~~~   28 (192)
T 2cjw_A            6 YYRVVLIGEQGVGKSTLANIFAG   28 (192)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHH
T ss_pred             eEEEEEECCCCCCHHHHHHHHhc
Confidence            35799999999999999999985

>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}

Probab=96.44  E-value=0.0016  Score=48.74  Aligned_cols=29  Identities=31%  Similarity=0.527  Sum_probs=22.3

Q ss_pred             CeeEEEEEecCCCcHHHHHHHHHHHhcCC
Q 039455           48 DVRFIGICGMGGIGKTTLAKVLYNTLKDQ   76 (216)
Q Consensus        48 ~~~~i~I~G~~GiGKTtL~~~~~~~~~~~   76 (216)
                      .+..|+|.|+.|+||||+++.+++.+...
T Consensus        24 ~g~~I~~eG~~GsGKsT~~~~l~~~l~~~   52 (227)
T 3v9p_A           24 RGKFITFEGIDGAGKTTHLQWFCDRLQER   52 (227)
T ss_dssp             CCCEEEEECCC---CHHHHHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHHhh
Confidence            46789999999999999999999877643

>3tmk_A Thymidylate kinase; phosphotransferase; HET: T5A; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 2tmk_A* 1tmk_A*

Probab=96.43  E-value=0.0028  Score=47.06  Aligned_cols=28  Identities=36%  Similarity=0.533  Sum_probs=25.1

Q ss_pred             CeeEEEEEecCCCcHHHHHHHHHHHhcC
Q 039455           48 DVRFIGICGMGGIGKTTLAKVLYNTLKD   75 (216)
Q Consensus        48 ~~~~i~I~G~~GiGKTtL~~~~~~~~~~   75 (216)
                      .+..|++.|+.|+||||+++.++..+..
T Consensus         4 ~g~~i~~eG~~g~GKst~~~~l~~~l~~   31 (216)
T 3tmk_A            4 RGKLILIEGLDRTGKTTQCNILYKKLQP   31 (216)
T ss_dssp             CCCEEEEEECSSSSHHHHHHHHHHHHCS
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHhcc
Confidence            3578999999999999999999998865

>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}

Probab=96.42  E-value=0.0019  Score=46.51  Aligned_cols=24  Identities=29%  Similarity=0.386  Sum_probs=21.4

Q ss_pred             eeEEEEEecCCCcHHHHHHHHHHH
Q 039455           49 VRFIGICGMGGIGKTTLAKVLYNT   72 (216)
Q Consensus        49 ~~~i~I~G~~GiGKTtL~~~~~~~   72 (216)
                      .-.|+|+|.+|+|||||+..+.+.
T Consensus        25 ~~ki~v~G~~~~GKSsLi~~l~~~   48 (193)
T 2oil_A           25 VFKVVLIGESGVGKTNLLSRFTRN   48 (193)
T ss_dssp             EEEEEEESSTTSSHHHHHHHHHHS
T ss_pred             ceEEEEECcCCCCHHHHHHHHhcC
Confidence            468999999999999999999873

>4hlc_A DTMP kinase, thymidylate kinase; TMK, MRSA, pipiridine, transfera transferase inhibitor complex; HET: T05; 1.55A {Staphylococcus aureus subsp} PDB: 2cck_A 4gfd_A* 4gsy_A* 4hdc_A* 4hej_A* 2ccj_A* 4hld_A* 2ccg_A*

Probab=96.42  E-value=0.0042  Score=45.70  Aligned_cols=29  Identities=34%  Similarity=0.602  Sum_probs=24.6

Q ss_pred             eEEEEEecCCCcHHHHHHHHHHHhcCCCC
Q 039455           50 RFIGICGMGGIGKTTLAKVLYNTLKDQFE   78 (216)
Q Consensus        50 ~~i~I~G~~GiGKTtL~~~~~~~~~~~~~   78 (216)
                      .-|+|-|+.|+||||+++.++..+...++
T Consensus         3 kFI~~EG~dGsGKsTq~~~L~~~L~~~~~   31 (205)
T 4hlc_A            3 AFITFEGPEGSGKTTVINEVYHRLVKDYD   31 (205)
T ss_dssp             EEEEEECCTTSCHHHHHHHHHHHHTTTSC
T ss_pred             CEEEEECCCCCcHHHHHHHHHHHHHCCCC
Confidence            56889999999999999999998865443

>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}

Probab=96.41  E-value=0.0023  Score=48.10  Aligned_cols=26  Identities=19%  Similarity=0.298  Sum_probs=22.3

Q ss_pred             CCeeEEEEEecCCCcHHHHHHHHHHH
Q 039455           47 DDVRFIGICGMGGIGKTTLAKVLYNT   72 (216)
Q Consensus        47 ~~~~~i~I~G~~GiGKTtL~~~~~~~   72 (216)
                      .....|+|+|.+|+|||||+..+.+.
T Consensus        27 ~~~~~i~lvG~~g~GKStlin~l~g~   52 (239)
T 3lxx_A           27 NSQLRIVLVGKTGAGKSATGNSILGR   52 (239)
T ss_dssp             -CEEEEEEECCTTSSHHHHHHHHHTS
T ss_pred             CCceEEEEECCCCCCHHHHHHHHcCC
Confidence            34578999999999999999999873

>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}

Probab=96.40  E-value=0.0013  Score=53.84  Aligned_cols=24  Identities=33%  Similarity=0.457  Sum_probs=20.9

Q ss_pred             eEEEEEecCCCcHHHHHHHHHHHh
Q 039455           50 RFIGICGMGGIGKTTLAKVLYNTL   73 (216)
Q Consensus        50 ~~i~I~G~~GiGKTtL~~~~~~~~   73 (216)
                      -.|+|+|++|+|||||++.+++..
T Consensus        32 f~I~lvG~sGaGKSTLln~L~g~~   55 (418)
T 2qag_C           32 FTLMVVGESGLGKSTLINSLFLTD   55 (418)
T ss_dssp             EEEEEECCTTSSHHHHHHHHTTCC
T ss_pred             EEEEEECCCCCcHHHHHHHHhCCC
Confidence            357999999999999999998743

>2ck3_D ATP synthase subunit beta\, mitochondrial; hydrolase; HET: ANP ADP; 1.9A {Bos taurus} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1cow_D* 1bmf_D* 1e1q_D* 1e1r_D* 1efr_D* 1e79_D* 1h8h_D* 1ohh_D* 1qo1_D 1w0j_D* 1w0k_D* 1h8e_D* 2jdi_D* 2jiz_D* 2jj1_D* 2jj2_D* 2v7q_D* 2wss_D* 2w6j_D 2w6e_D ...

Probab=96.40  E-value=0.022  Score=47.20  Aligned_cols=27  Identities=37%  Similarity=0.495  Sum_probs=23.9

Q ss_pred             CeeEEEEEecCCCcHHHHHHHHHHHhc
Q 039455           48 DVRFIGICGMGGIGKTTLAKVLYNTLK   74 (216)
Q Consensus        48 ~~~~i~I~G~~GiGKTtL~~~~~~~~~   74 (216)
                      ++..++|.|++|+|||+|+..++..+.
T Consensus       152 kGQr~~Ifgg~G~GKT~L~~~i~~~~~  178 (482)
T 2ck3_D          152 KGGKIGLFGGAGVGKTVLIMELINNVA  178 (482)
T ss_dssp             TTCEEEEEECTTSSHHHHHHHHHHHTT
T ss_pred             cCCeeeeecCCCCChHHHHHHHHHhhH
Confidence            457999999999999999999998754

>3fdi_A Uncharacterized protein; cytidylate kinase like protein, PSI, MCSG, PRK04182 class ME structural genomics, protein structure initiative; 2.20A {Eubacterium ventriosum}

Probab=96.40  E-value=0.0025  Score=46.77  Aligned_cols=25  Identities=28%  Similarity=0.195  Sum_probs=23.1

Q ss_pred             eEEEEEecCCCcHHHHHHHHHHHhc
Q 039455           50 RFIGICGMGGIGKTTLAKVLYNTLK   74 (216)
Q Consensus        50 ~~i~I~G~~GiGKTtL~~~~~~~~~   74 (216)
                      .+|+|.|+.|+||||+++.++.++.
T Consensus         7 ~iI~i~g~~GsGk~ti~~~la~~lg   31 (201)
T 3fdi_A            7 IIIAIGREFGSGGHLVAKKLAEHYN   31 (201)
T ss_dssp             CEEEEEECTTSSHHHHHHHHHHHTT
T ss_pred             eEEEEeCCCCCCHHHHHHHHHHHhC
Confidence            6899999999999999999999764

>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}

Probab=96.39  E-value=0.0021  Score=46.45  Aligned_cols=24  Identities=17%  Similarity=0.201  Sum_probs=21.5

Q ss_pred             eeEEEEEecCCCcHHHHHHHHHHH
Q 039455           49 VRFIGICGMGGIGKTTLAKVLYNT   72 (216)
Q Consensus        49 ~~~i~I~G~~GiGKTtL~~~~~~~   72 (216)
                      .-.|+|+|++|+|||||+..+.+.
T Consensus         7 ~~ki~v~G~~~~GKSsli~~l~~~   30 (208)
T 3clv_A            7 SYKTVLLGESSVGKSSIVLRLTKD   30 (208)
T ss_dssp             SEEEEEECCTTSSHHHHHHHHHHS
T ss_pred             ceEEEEECCCCCCHHHHHHHHHhC
Confidence            467999999999999999999874

>2axn_A 6-phosphofructo-2-kinase/fructose-2,6- biphosphatase 3 (6PF-2-K/FRU- 2,6-P2ASE brain/placenta-type...; bifunctional enzyme, EDTA complex; HET: F6P EDT ADP; 2.10A {Homo sapiens} PDB: 2dwo_A* 2dwp_A* 2i1v_B* 3qpu_A* 3qpv_A* 3qpw_A*

Probab=96.39  E-value=0.0026  Score=53.61  Aligned_cols=27  Identities=30%  Similarity=0.357  Sum_probs=23.7

Q ss_pred             CeeEEEEEecCCCcHHHHHHHHHHHhc
Q 039455           48 DVRFIGICGMGGIGKTTLAKVLYNTLK   74 (216)
Q Consensus        48 ~~~~i~I~G~~GiGKTtL~~~~~~~~~   74 (216)
                      ...+|+++|.+|+||||+++.++..+.
T Consensus        34 ~~~lIvlvGlpGSGKSTia~~La~~L~   60 (520)
T 2axn_A           34 SPTVIVMVGLPARGKTYISKKLTRYLN   60 (520)
T ss_dssp             CCEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHh
Confidence            346899999999999999999998764

>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...

Probab=96.39  E-value=0.0011  Score=50.75  Aligned_cols=27  Identities=26%  Similarity=0.347  Sum_probs=23.6

Q ss_pred             CeeEEEEEecCCCcHHHHHHHHHHHhc
Q 039455           48 DVRFIGICGMGGIGKTTLAKVLYNTLK   74 (216)
Q Consensus        48 ~~~~i~I~G~~GiGKTtL~~~~~~~~~   74 (216)
                      ....|+|.|+.|+||||+++.++..+.
T Consensus        23 ~~~~I~ieG~~GsGKST~~~~L~~~l~   49 (263)
T 1p5z_B           23 RIKKISIEGNIAAGKSTFVNILKQLCE   49 (263)
T ss_dssp             CCEEEEEECSTTSSHHHHHTTTGGGCT
T ss_pred             CceEEEEECCCCCCHHHHHHHHHHhcC
Confidence            457999999999999999999987653

>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}

Probab=96.39  E-value=0.0025  Score=47.76  Aligned_cols=24  Identities=25%  Similarity=0.299  Sum_probs=21.7

Q ss_pred             eEEEEEecCCCcHHHHHHHHHHHh
Q 039455           50 RFIGICGMGGIGKTTLAKVLYNTL   73 (216)
Q Consensus        50 ~~i~I~G~~GiGKTtL~~~~~~~~   73 (216)
                      -.++|.|++|+||||+++.++..+
T Consensus         9 ~~~~~~G~pGsGKsT~a~~L~~~~   32 (230)
T 3gmt_A            9 MRLILLGAPGAGKGTQANFIKEKF   32 (230)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHHHH
T ss_pred             cceeeECCCCCCHHHHHHHHHHHh
Confidence            468999999999999999999876

>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*

Probab=96.39  E-value=0.0031  Score=44.54  Aligned_cols=25  Identities=28%  Similarity=0.305  Sum_probs=21.6

Q ss_pred             CeeEEEEEecCCCcHHHHHHHHHHH
Q 039455           48 DVRFIGICGMGGIGKTTLAKVLYNT   72 (216)
Q Consensus        48 ~~~~i~I~G~~GiGKTtL~~~~~~~   72 (216)
                      ..-.|+|.|.+|+|||||+..+.+.
T Consensus         5 ~~~ki~v~G~~~~GKssl~~~l~~~   29 (178)
T 2hxs_A            5 RQLKIVVLGDGASGKTSLTTCFAQE   29 (178)
T ss_dssp             CEEEEEEECCTTSSHHHHHHHHHGG
T ss_pred             ceEEEEEECcCCCCHHHHHHHHHhC
Confidence            3467999999999999999999863

>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*

Probab=96.37  E-value=0.0022  Score=45.69  Aligned_cols=25  Identities=24%  Similarity=0.501  Sum_probs=21.9

Q ss_pred             CeeEEEEEecCCCcHHHHHHHHHHH
Q 039455           48 DVRFIGICGMGGIGKTTLAKVLYNT   72 (216)
Q Consensus        48 ~~~~i~I~G~~GiGKTtL~~~~~~~   72 (216)
                      ..-.|+|+|.+|+|||||+..+.+.
T Consensus        17 ~~~ki~v~G~~~~GKSsl~~~l~~~   41 (183)
T 3kkq_A           17 PTYKLVVVGDGGVGKSALTIQFFQK   41 (183)
T ss_dssp             CEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred             CceEEEEECCCCCCHHHHHHHHHhC
Confidence            4568899999999999999999864

>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*

Probab=96.37  E-value=0.0022  Score=45.50  Aligned_cols=24  Identities=21%  Similarity=0.214  Sum_probs=21.2

Q ss_pred             eeEEEEEecCCCcHHHHHHHHHHH
Q 039455           49 VRFIGICGMGGIGKTTLAKVLYNT   72 (216)
Q Consensus        49 ~~~i~I~G~~GiGKTtL~~~~~~~   72 (216)
                      ...|+|+|.+|+|||||+..+...
T Consensus        12 ~~ki~v~G~~~~GKSsli~~l~~~   35 (181)
T 2efe_B           12 NAKLVLLGDVGAGKSSLVLRFVKD   35 (181)
T ss_dssp             EEEEEEECCTTSCHHHHHHHHHHC
T ss_pred             ceEEEEECcCCCCHHHHHHHHHcC
Confidence            457999999999999999999863

>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*

Probab=96.37  E-value=0.0026  Score=45.45  Aligned_cols=24  Identities=25%  Similarity=0.400  Sum_probs=21.2

Q ss_pred             eeEEEEEecCCCcHHHHHHHHHHH
Q 039455           49 VRFIGICGMGGIGKTTLAKVLYNT   72 (216)
Q Consensus        49 ~~~i~I~G~~GiGKTtL~~~~~~~   72 (216)
                      .-.|+|.|.+|+|||||+..+.+.
T Consensus         4 ~~ki~v~G~~~~GKSsli~~l~~~   27 (189)
T 4dsu_A            4 EYKLVVVGADGVGKSALTIQLIQN   27 (189)
T ss_dssp             EEEEEEECCTTSSHHHHHHHHHHS
T ss_pred             EEEEEEECCCCCCHHHHHHHHHhC
Confidence            357899999999999999999863

>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X

Probab=96.37  E-value=0.0022  Score=50.15  Aligned_cols=25  Identities=36%  Similarity=0.515  Sum_probs=22.3

Q ss_pred             CeeEEEEEecCCCcHHHHHHHHHHH
Q 039455           48 DVRFIGICGMGGIGKTTLAKVLYNT   72 (216)
Q Consensus        48 ~~~~i~I~G~~GiGKTtL~~~~~~~   72 (216)
                      ....|+|+|.+|+|||||++.+.+.
T Consensus         7 r~~~VaIvG~~nvGKSTLln~L~g~   31 (301)
T 1ega_A            7 YCGFIAIVGRPNVGKSTLLNKLLGQ   31 (301)
T ss_dssp             EEEEEEEECSSSSSHHHHHHHHHTC
T ss_pred             cCCEEEEECCCCCCHHHHHHHHHCC
Confidence            3568999999999999999999874

>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8

Probab=96.37  E-value=0.0023  Score=46.18  Aligned_cols=24  Identities=17%  Similarity=0.275  Sum_probs=21.5

Q ss_pred             eeEEEEEecCCCcHHHHHHHHHHH
Q 039455           49 VRFIGICGMGGIGKTTLAKVLYNT   72 (216)
Q Consensus        49 ~~~i~I~G~~GiGKTtL~~~~~~~   72 (216)
                      .-.|+|+|.+|+|||||+..+.+.
T Consensus        23 ~~ki~vvG~~~~GKSsli~~l~~~   46 (192)
T 2fg5_A           23 ELKVCLLGDTGVGKSSIVCRFVQD   46 (192)
T ss_dssp             EEEEEEEECTTSSHHHHHHHHHHC
T ss_pred             ceEEEEECcCCCCHHHHHHHHhcC
Confidence            467999999999999999999864

>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*

Probab=96.36  E-value=0.0022  Score=45.62  Aligned_cols=24  Identities=25%  Similarity=0.487  Sum_probs=21.4

Q ss_pred             eeEEEEEecCCCcHHHHHHHHHHH
Q 039455           49 VRFIGICGMGGIGKTTLAKVLYNT   72 (216)
Q Consensus        49 ~~~i~I~G~~GiGKTtL~~~~~~~   72 (216)
                      ...|+|+|.+|+|||||+..+...
T Consensus        18 ~~ki~v~G~~~~GKSsli~~l~~~   41 (187)
T 2a9k_A           18 LHKVIMVGSGGVGKSALTLQFMYD   41 (187)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred             ceEEEEECCCCCCHHHHHHHHhhC
Confidence            467999999999999999999863

>1fx0_B ATP synthase beta chain; latent ATPase, thermal stability, potential tentoxin binding hydrolase; 3.20A {Spinacia oleracea} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1kmh_B*

Probab=96.36  E-value=0.022  Score=47.38  Aligned_cols=37  Identities=32%  Similarity=0.357  Sum_probs=28.0

Q ss_pred             CCeeEEEEEecCCCcHHHHHHHHHHHhcC-CCCceEee
Q 039455           47 DDVRFIGICGMGGIGKTTLAKVLYNTLKD-QFEASSFL   83 (216)
Q Consensus        47 ~~~~~i~I~G~~GiGKTtL~~~~~~~~~~-~~~~~~~~   83 (216)
                      .++..++|.|++|+|||+|+..++..+.. +....++.
T Consensus       163 gkGqr~gIfgg~GvGKT~L~~~l~~~~a~~~~~v~V~~  200 (498)
T 1fx0_B          163 RRGGKIGLFGGAGVGKTVLIMELINNIAKAHGGVSVFG  200 (498)
T ss_dssp             CTTCCEEEEECSSSSHHHHHHHHHHHTTTTCSSCEEEE
T ss_pred             ccCCeEEeecCCCCCchHHHHHHHHHHHhhCCCEEEEE
Confidence            35678999999999999999999987543 33344444

>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8

Probab=96.36  E-value=0.0031  Score=46.19  Aligned_cols=25  Identities=28%  Similarity=0.214  Sum_probs=22.1

Q ss_pred             CeeEEEEEecCCCcHHHHHHHHHHH
Q 039455           48 DVRFIGICGMGGIGKTTLAKVLYNT   72 (216)
Q Consensus        48 ~~~~i~I~G~~GiGKTtL~~~~~~~   72 (216)
                      ..-.|+|+|.+|+|||||+..+...
T Consensus        27 ~~~ki~vvG~~~vGKSsLi~~l~~~   51 (205)
T 1gwn_A           27 VKCKIVVVGDSQCGKTALLHVFAKD   51 (205)
T ss_dssp             CEEEEEEEESTTSSHHHHHHHHHHS
T ss_pred             eeeEEEEECCCCCCHHHHHHHHhcC
Confidence            4568999999999999999999873

>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8

Probab=96.36  E-value=0.0023  Score=45.37  Aligned_cols=24  Identities=25%  Similarity=0.301  Sum_probs=21.3

Q ss_pred             eeEEEEEecCCCcHHHHHHHHHHH
Q 039455           49 VRFIGICGMGGIGKTTLAKVLYNT   72 (216)
Q Consensus        49 ~~~i~I~G~~GiGKTtL~~~~~~~   72 (216)
                      .-.|+|.|.+|+|||||+..+.+.
T Consensus        10 ~~~i~v~G~~~~GKssli~~l~~~   33 (180)
T 2g6b_A           10 AFKVMLVGDSGVGKTCLLVRFKDG   33 (180)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred             ceEEEEECcCCCCHHHHHHHHHhC
Confidence            457899999999999999999863

>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A

Probab=96.36  E-value=0.0016  Score=46.19  Aligned_cols=24  Identities=21%  Similarity=0.293  Sum_probs=21.2

Q ss_pred             eeEEEEEecCCCcHHHHHHHHHHH
Q 039455           49 VRFIGICGMGGIGKTTLAKVLYNT   72 (216)
Q Consensus        49 ~~~i~I~G~~GiGKTtL~~~~~~~   72 (216)
                      .-.|+|.|.+|+|||+|+..+.+.
T Consensus         7 ~~ki~~vG~~~vGKTsli~~l~~~   30 (178)
T 2iwr_A            7 ELRLGVLGDARSGKSSLIHRFLTG   30 (178)
T ss_dssp             EEEEEEECCGGGCHHHHHHHHHHS
T ss_pred             ceEEEEECCCCCCHHHHHHHHHhC
Confidence            457899999999999999999873

>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}

Probab=96.35  E-value=0.0025  Score=45.11  Aligned_cols=25  Identities=28%  Similarity=0.387  Sum_probs=21.7

Q ss_pred             CCeeEEEEEecCCCcHHHHHHHHHH
Q 039455           47 DDVRFIGICGMGGIGKTTLAKVLYN   71 (216)
Q Consensus        47 ~~~~~i~I~G~~GiGKTtL~~~~~~   71 (216)
                      +....|+|.|.+|+|||||+..+.+
T Consensus         7 ~~~~~i~v~G~~~~GKssl~~~l~~   31 (181)
T 3tw8_B            7 DHLFKLLIIGDSGVGKSSLLLRFAD   31 (181)
T ss_dssp             CEEEEEEEECCTTSCHHHHHHHHCS
T ss_pred             CcceEEEEECCCCCCHHHHHHHHhc
Confidence            3456899999999999999999875

>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*

Probab=96.35  E-value=0.0025  Score=46.40  Aligned_cols=23  Identities=30%  Similarity=0.403  Sum_probs=20.3

Q ss_pred             eeEEEEEecCCCcHHHHHHHHHH
Q 039455           49 VRFIGICGMGGIGKTTLAKVLYN   71 (216)
Q Consensus        49 ~~~i~I~G~~GiGKTtL~~~~~~   71 (216)
                      ...|+|.|++|+|||||++.+.+
T Consensus        25 ~~ki~lvG~~~vGKSsLi~~l~~   47 (198)
T 1f6b_A           25 TGKLVFLGLDNAGKTTLLHMLKD   47 (198)
T ss_dssp             CEEEEEEEETTSSHHHHHHHHSC
T ss_pred             CcEEEEECCCCCCHHHHHHHHhc
Confidence            35789999999999999999864

>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*

Probab=96.34  E-value=0.0021  Score=46.24  Aligned_cols=25  Identities=36%  Similarity=0.268  Sum_probs=20.9

Q ss_pred             eeEEEEEecCCCcHHHHHHHHHHHh
Q 039455           49 VRFIGICGMGGIGKTTLAKVLYNTL   73 (216)
Q Consensus        49 ~~~i~I~G~~GiGKTtL~~~~~~~~   73 (216)
                      .-.|+|.|.+|+|||||++.+.+..
T Consensus        14 ~~ki~vvG~~~~GKssL~~~l~~~~   38 (198)
T 3t1o_A           14 NFKIVYYGPGLSGKTTNLKWIYSKV   38 (198)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHTS
T ss_pred             ccEEEEECCCCCCHHHHHHHHHhhc
Confidence            4579999999999999997776643

>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*

Probab=96.34  E-value=0.0031  Score=45.82  Aligned_cols=25  Identities=32%  Similarity=0.367  Sum_probs=22.0

Q ss_pred             CeeEEEEEecCCCcHHHHHHHHHHH
Q 039455           48 DVRFIGICGMGGIGKTTLAKVLYNT   72 (216)
Q Consensus        48 ~~~~i~I~G~~GiGKTtL~~~~~~~   72 (216)
                      ....|+|.|.+|+|||||+..+.+.
T Consensus         7 ~~~ki~v~G~~~~GKSsli~~l~~~   31 (207)
T 1vg8_A            7 VLLKVIILGDSGVGKTSLMNQYVNK   31 (207)
T ss_dssp             CEEEEEEECCTTSSHHHHHHHHHHS
T ss_pred             cceEEEEECcCCCCHHHHHHHHHcC
Confidence            4568999999999999999999874

>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}

Probab=96.33  E-value=0.0032  Score=45.24  Aligned_cols=25  Identities=24%  Similarity=0.271  Sum_probs=21.8

Q ss_pred             CeeEEEEEecCCCcHHHHHHHHHHH
Q 039455           48 DVRFIGICGMGGIGKTTLAKVLYNT   72 (216)
Q Consensus        48 ~~~~i~I~G~~GiGKTtL~~~~~~~   72 (216)
                      ..-.|+|+|.+|+|||||+..+.+.
T Consensus        20 ~~~ki~vvG~~~vGKTsLi~~l~~~   44 (187)
T 3c5c_A           20 LEVNLAILGRRGAGKSALTVKFLTK   44 (187)
T ss_dssp             CEEEEEEECCTTSSHHHHHHHHHHS
T ss_pred             ceEEEEEECCCCCcHHHHHHHHHhC
Confidence            3468999999999999999999863

>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}

Probab=96.33  E-value=0.0036  Score=45.39  Aligned_cols=25  Identities=24%  Similarity=0.464  Sum_probs=21.8

Q ss_pred             CeeEEEEEecCCCcHHHHHHHHHHH
Q 039455           48 DVRFIGICGMGGIGKTTLAKVLYNT   72 (216)
Q Consensus        48 ~~~~i~I~G~~GiGKTtL~~~~~~~   72 (216)
                      ....|+|.|.+|+|||||+..+.+.
T Consensus        13 ~~~ki~v~G~~~~GKSsli~~l~~~   37 (206)
T 2bov_A           13 ALHKVIMVGSGGVGKSALTLQFMYD   37 (206)
T ss_dssp             CEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred             ceEEEEEECCCCCCHHHHHHHHHhC
Confidence            4568999999999999999999863

>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*

Probab=96.33  E-value=0.0025  Score=45.28  Aligned_cols=23  Identities=30%  Similarity=0.463  Sum_probs=21.0

Q ss_pred             eeEEEEEecCCCcHHHHHHHHHH
Q 039455           49 VRFIGICGMGGIGKTTLAKVLYN   71 (216)
Q Consensus        49 ~~~i~I~G~~GiGKTtL~~~~~~   71 (216)
                      ...|+|.|.+|+|||||+..+..
T Consensus         6 ~~ki~~~G~~~~GKSsli~~l~~   28 (181)
T 3t5g_A            6 SRKIAILGYRSVGKSSLTIQFVE   28 (181)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHH
T ss_pred             eEEEEEECcCCCCHHHHHHHHHc
Confidence            46899999999999999999985

>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8

Probab=96.33  E-value=0.0025  Score=46.62  Aligned_cols=24  Identities=29%  Similarity=0.398  Sum_probs=21.4

Q ss_pred             eeEEEEEecCCCcHHHHHHHHHHH
Q 039455           49 VRFIGICGMGGIGKTTLAKVLYNT   72 (216)
Q Consensus        49 ~~~i~I~G~~GiGKTtL~~~~~~~   72 (216)
                      ...|+|+|.+|+|||||++.+...
T Consensus        26 ~~ki~lvG~~~vGKSsLi~~l~~~   49 (201)
T 2ew1_A           26 LFKIVLIGNAGVGKTCLVRRFTQG   49 (201)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHHS
T ss_pred             ceEEEEECcCCCCHHHHHHHHHhC
Confidence            468999999999999999998863

>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...

Probab=96.33  E-value=0.0032  Score=44.82  Aligned_cols=23  Identities=26%  Similarity=0.248  Sum_probs=20.7

Q ss_pred             eeEEEEEecCCCcHHHHHHHHHH
Q 039455           49 VRFIGICGMGGIGKTTLAKVLYN   71 (216)
Q Consensus        49 ~~~i~I~G~~GiGKTtL~~~~~~   71 (216)
                      .-.|+|.|.+|+|||||+..+.+
T Consensus         5 ~~~i~~~G~~~~GKssl~~~l~~   27 (186)
T 1mh1_A            5 AIKCVVVGDGAVGKTCLLISYTT   27 (186)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEEEECCCCCCHHHHHHHHHc
Confidence            45789999999999999999986

>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=96.32  E-value=0.0024  Score=46.18  Aligned_cols=25  Identities=24%  Similarity=0.388  Sum_probs=21.9

Q ss_pred             CeeEEEEEecCCCcHHHHHHHHHHH
Q 039455           48 DVRFIGICGMGGIGKTTLAKVLYNT   72 (216)
Q Consensus        48 ~~~~i~I~G~~GiGKTtL~~~~~~~   72 (216)
                      ..-.|+|.|.+|+|||||+..+.+.
T Consensus        27 ~~~ki~v~G~~~vGKSsli~~l~~~   51 (196)
T 2atv_A           27 AEVKLAIFGRAGVGKSALVVRFLTK   51 (196)
T ss_dssp             CCEEEEEECCTTSSHHHHHHHHHHS
T ss_pred             CceEEEEECCCCCCHHHHHHHHHhC
Confidence            3468999999999999999999873

>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=96.32  E-value=0.0025  Score=45.85  Aligned_cols=24  Identities=21%  Similarity=0.196  Sum_probs=21.3

Q ss_pred             eeEEEEEecCCCcHHHHHHHHHHH
Q 039455           49 VRFIGICGMGGIGKTTLAKVLYNT   72 (216)
Q Consensus        49 ~~~i~I~G~~GiGKTtL~~~~~~~   72 (216)
                      .-.|+|.|.+|+|||||+..+.+.
T Consensus        23 ~~ki~v~G~~~~GKSsli~~l~~~   46 (191)
T 3dz8_A           23 MFKLLIIGNSSVGKTSFLFRYADD   46 (191)
T ss_dssp             CEEEEEEESTTSSHHHHHHHHHHH
T ss_pred             eeEEEEECCCCcCHHHHHHHHhcC
Confidence            357999999999999999999874

>1x6v_B Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthethase 1; transferase, ATP sulfurylase, APS kinase, PAPS; HET: ADP; 1.75A {Homo sapiens} SCOP: b.122.1.3 c.26.1.5 c.37.1.4 PDB: 1xjq_B* 1xnj_B* 2qjf_A* 2ofx_A* 2ofw_A*

Probab=96.32  E-value=0.0031  Score=54.13  Aligned_cols=27  Identities=30%  Similarity=0.347  Sum_probs=24.4

Q ss_pred             CeeEEEEEecCCCcHHHHHHHHHHHhc
Q 039455           48 DVRFIGICGMGGIGKTTLAKVLYNTLK   74 (216)
Q Consensus        48 ~~~~i~I~G~~GiGKTtL~~~~~~~~~   74 (216)
                      .+..|+|+|++|+||||+++.++.++.
T Consensus        51 ~g~lIvLtGlsGSGKSTlAr~La~~L~   77 (630)
T 1x6v_B           51 RGCTVWLTGLSGAGKTTVSMALEEYLV   77 (630)
T ss_dssp             CCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred             CCCEEEEEeCCCCCHHHHHHHHHHHHH
Confidence            567999999999999999999998764

>1c9k_A COBU, adenosylcobinamide kinase; alpha/beta structure rossmann fold P-loop, transferase; HET: 5GP; 2.20A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1cbu_A

Probab=96.32  E-value=0.0025  Score=45.92  Aligned_cols=21  Identities=29%  Similarity=0.313  Sum_probs=19.2

Q ss_pred             EEEEecCCCcHHHHHHHHHHH
Q 039455           52 IGICGMGGIGKTTLAKVLYNT   72 (216)
Q Consensus        52 i~I~G~~GiGKTtL~~~~~~~   72 (216)
                      +.|+|++|+|||++|..++..
T Consensus         2 ilV~Gg~~SGKS~~A~~la~~   22 (180)
T 1c9k_A            2 ILVTGGARSGKSRHAEALIGD   22 (180)
T ss_dssp             EEEEECTTSSHHHHHHHHHCS
T ss_pred             EEEECCCCCcHHHHHHHHHhc
Confidence            689999999999999999865

>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C

Probab=96.32  E-value=0.0025  Score=45.26  Aligned_cols=24  Identities=25%  Similarity=0.199  Sum_probs=20.9

Q ss_pred             eeEEEEEecCCCcHHHHHHHHHHH
Q 039455           49 VRFIGICGMGGIGKTTLAKVLYNT   72 (216)
Q Consensus        49 ~~~i~I~G~~GiGKTtL~~~~~~~   72 (216)
                      .-.|+|.|.+|+|||||+..+...
T Consensus         8 ~~ki~v~G~~~~GKssl~~~~~~~   31 (182)
T 3bwd_D            8 FIKCVTVGDGAVGKTCLLISYTSN   31 (182)
T ss_dssp             CCEEEEECSTTSSHHHHHHHHHHS
T ss_pred             eEEEEEECCCCCCHHHHHHHHhcC
Confidence            357899999999999999998863

>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2

Probab=96.32  E-value=0.0049  Score=51.69  Aligned_cols=38  Identities=8%  Similarity=-0.038  Sum_probs=29.8

Q ss_pred             CCeeEEEEEecCCCcHHHHHHHHHHHhcCC-CCceEeec
Q 039455           47 DDVRFIGICGMGGIGKTTLAKVLYNTLKDQ-FEASSFLA   84 (216)
Q Consensus        47 ~~~~~i~I~G~~GiGKTtL~~~~~~~~~~~-~~~~~~~~   84 (216)
                      ..+..+.|.|++|+|||+|+..++...... -..+.|++
T Consensus       240 ~~G~l~li~G~pG~GKT~lal~~a~~~a~~~g~~vl~~s  278 (503)
T 1q57_A          240 RGGEVIMVTSGSGMVMSTFVRQQALQWGTAMGKKVGLAM  278 (503)
T ss_dssp             CTTCEEEEEESSCHHHHHHHHHHHHHHTTTSCCCEEEEE
T ss_pred             CCCeEEEEeecCCCCchHHHHHHHHHHHHhcCCcEEEEe
Confidence            356799999999999999999999876543 34566664

>1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12

Probab=96.31  E-value=0.0024  Score=52.41  Aligned_cols=23  Identities=26%  Similarity=0.446  Sum_probs=21.2

Q ss_pred             eeEEEEEecCCCcHHHHHHHHHH
Q 039455           49 VRFIGICGMGGIGKTTLAKVLYN   71 (216)
Q Consensus        49 ~~~i~I~G~~GiGKTtL~~~~~~   71 (216)
                      +...+|+|++|+|||||+..++.
T Consensus        26 ~~~~~i~G~nG~GKstll~ai~~   48 (430)
T 1w1w_A           26 SNFTSIIGPNGSGKSNMMDAISF   48 (430)
T ss_dssp             CSEEEEECSTTSSHHHHHHHHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHHh
Confidence            47899999999999999999986

>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*

Probab=96.31  E-value=0.0025  Score=45.77  Aligned_cols=24  Identities=17%  Similarity=0.180  Sum_probs=21.4

Q ss_pred             eeEEEEEecCCCcHHHHHHHHHHH
Q 039455           49 VRFIGICGMGGIGKTTLAKVLYNT   72 (216)
Q Consensus        49 ~~~i~I~G~~GiGKTtL~~~~~~~   72 (216)
                      .-.|+|+|.+|+|||||+..+.+.
T Consensus        22 ~~ki~vvG~~~~GKSsli~~l~~~   45 (189)
T 2gf9_A           22 MFKLLLIGNSSVGKTSFLFRYADD   45 (189)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred             eeEEEEECCCCCCHHHHHHHHHcC
Confidence            468999999999999999999864

>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=96.30  E-value=0.0023  Score=45.58  Aligned_cols=25  Identities=36%  Similarity=0.329  Sum_probs=21.5

Q ss_pred             CCeeEEEEEecCCCcHHHHHHHHHH
Q 039455           47 DDVRFIGICGMGGIGKTTLAKVLYN   71 (216)
Q Consensus        47 ~~~~~i~I~G~~GiGKTtL~~~~~~   71 (216)
                      .....|+|.|++|+|||||+..+..
T Consensus        16 ~~~~~i~v~G~~~~GKssli~~l~~   40 (183)
T 1moz_A           16 NKELRILILGLDGAGKTTILYRLQI   40 (183)
T ss_dssp             SSCEEEEEEEETTSSHHHHHHHTCC
T ss_pred             CCccEEEEECCCCCCHHHHHHHHhc
Confidence            3457899999999999999988864

>1e69_A Chromosome segregation SMC protein; structural maintenance of chromosomes, coiled coil; 3.1A {Thermotoga maritima} SCOP: c.37.1.12

Probab=96.30  E-value=0.0017  Score=51.25  Aligned_cols=22  Identities=27%  Similarity=0.450  Sum_probs=20.2

Q ss_pred             eEEEEEecCCCcHHHHHHHHHH
Q 039455           50 RFIGICGMGGIGKTTLAKVLYN   71 (216)
Q Consensus        50 ~~i~I~G~~GiGKTtL~~~~~~   71 (216)
                      ...+|+|++|+|||+|++.++.
T Consensus        25 g~~~i~G~NGsGKS~ll~ai~~   46 (322)
T 1e69_A           25 RVTAIVGPNGSGKSNIIDAIKW   46 (322)
T ss_dssp             SEEEEECCTTTCSTHHHHHHHH
T ss_pred             CcEEEECCCCCcHHHHHHHHHH
Confidence            4899999999999999999983

>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*

Probab=96.29  E-value=0.0026  Score=45.73  Aligned_cols=24  Identities=25%  Similarity=0.295  Sum_probs=21.3

Q ss_pred             eeEEEEEecCCCcHHHHHHHHHHH
Q 039455           49 VRFIGICGMGGIGKTTLAKVLYNT   72 (216)
Q Consensus        49 ~~~i~I~G~~GiGKTtL~~~~~~~   72 (216)
                      .-.|+|+|.+|+|||||+..+.+.
T Consensus        22 ~~ki~v~G~~~~GKSsli~~l~~~   45 (188)
T 1zd9_A           22 EMELTLVGLQYSGKTTFVNVIASG   45 (188)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred             ccEEEEECCCCCCHHHHHHHHHcC
Confidence            467999999999999999999863

>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=96.28  E-value=0.004  Score=44.88  Aligned_cols=24  Identities=25%  Similarity=0.461  Sum_probs=21.4

Q ss_pred             CeeEEEEEecCCCcHHHHHHHHHH
Q 039455           48 DVRFIGICGMGGIGKTTLAKVLYN   71 (216)
Q Consensus        48 ~~~~i~I~G~~GiGKTtL~~~~~~   71 (216)
                      ....|+|+|.+|+|||||+..+.+
T Consensus         7 ~~~ki~vvG~~~~GKSsli~~l~~   30 (199)
T 2gf0_A            7 NDYRVVVFGAGGVGKSSLVLRFVK   30 (199)
T ss_dssp             CCEEEEEEECTTSSHHHHHHHHHH
T ss_pred             CeeEEEEECCCCCcHHHHHHHHHc
Confidence            346899999999999999999986

>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}

Probab=96.27  E-value=0.0038  Score=45.37  Aligned_cols=25  Identities=32%  Similarity=0.385  Sum_probs=22.2

Q ss_pred             CeeEEEEEecCCCcHHHHHHHHHHH
Q 039455           48 DVRFIGICGMGGIGKTTLAKVLYNT   72 (216)
Q Consensus        48 ~~~~i~I~G~~GiGKTtL~~~~~~~   72 (216)
                      ....|+|.|.+|+|||||+..+.+.
T Consensus        23 ~~~ki~vvG~~~~GKSsli~~l~~~   47 (201)
T 3oes_A           23 RYRKVVILGYRCVGKTSLAHQFVEG   47 (201)
T ss_dssp             CEEEEEEEESTTSSHHHHHHHHHHS
T ss_pred             CcEEEEEECCCCcCHHHHHHHHHhC
Confidence            4578999999999999999999873

>1qhl_A Protein (cell division protein MUKB); SMC, chromosome partitioning; 2.20A {Escherichia coli} SCOP: c.37.1.12

Probab=96.27  E-value=0.00096  Score=50.00  Aligned_cols=26  Identities=23%  Similarity=0.337  Sum_probs=21.9

Q ss_pred             EEEEEecCCCcHHHHHHHHHHHhcCC
Q 039455           51 FIGICGMGGIGKTTLAKVLYNTLKDQ   76 (216)
Q Consensus        51 ~i~I~G~~GiGKTtL~~~~~~~~~~~   76 (216)
                      +++|+||+|+|||||++.++..+...
T Consensus        29 ~~~i~GpnGsGKSTll~~i~g~~~~~   54 (227)
T 1qhl_A           29 VTTLSGGNGAGKSTTMAAFVTALIPD   54 (227)
T ss_dssp             HHHHHSCCSHHHHHHHHHHHHHHSCC
T ss_pred             EEEEECCCCCCHHHHHHHHhcccccC
Confidence            45688999999999999999876543

>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*

Probab=96.27  E-value=0.0027  Score=45.75  Aligned_cols=24  Identities=25%  Similarity=0.246  Sum_probs=21.2

Q ss_pred             eeEEEEEecCCCcHHHHHHHHHHH
Q 039455           49 VRFIGICGMGGIGKTTLAKVLYNT   72 (216)
Q Consensus        49 ~~~i~I~G~~GiGKTtL~~~~~~~   72 (216)
                      .-.|+|+|.+|+|||||+..+.+.
T Consensus        21 ~~ki~v~G~~~~GKSsli~~l~~~   44 (191)
T 2a5j_A           21 LFKYIIIGDTGVGKSCLLLQFTDK   44 (191)
T ss_dssp             EEEEEEESSTTSSHHHHHHHHHHS
T ss_pred             ceEEEEECcCCCCHHHHHHHHhcC
Confidence            457999999999999999999863

>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*

Probab=96.26  E-value=0.0028  Score=46.19  Aligned_cols=24  Identities=21%  Similarity=0.303  Sum_probs=21.3

Q ss_pred             eeEEEEEecCCCcHHHHHHHHHHH
Q 039455           49 VRFIGICGMGGIGKTTLAKVLYNT   72 (216)
Q Consensus        49 ~~~i~I~G~~GiGKTtL~~~~~~~   72 (216)
                      ...|+|.|.+|+|||||+..+.+.
T Consensus         8 ~~ki~v~G~~~~GKSsli~~l~~~   31 (206)
T 2bcg_Y            8 LFKLLLIGNSGVGKSCLLLRFSDD   31 (206)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHHC
T ss_pred             ceEEEEECCCCCCHHHHHHHHhcC
Confidence            468999999999999999999863

>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*

Probab=96.25  E-value=0.0028  Score=45.71  Aligned_cols=25  Identities=28%  Similarity=0.336  Sum_probs=21.9

Q ss_pred             CeeEEEEEecCCCcHHHHHHHHHHH
Q 039455           48 DVRFIGICGMGGIGKTTLAKVLYNT   72 (216)
Q Consensus        48 ~~~~i~I~G~~GiGKTtL~~~~~~~   72 (216)
                      ..-.|+|+|.+|+|||||+..+.+.
T Consensus        22 ~~~ki~~vG~~~~GKSsl~~~l~~~   46 (194)
T 3reg_A           22 KALKIVVVGDGAVGKTCLLLAFSKG   46 (194)
T ss_dssp             EEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred             eeeEEEEECcCCCCHHHHHHHHhcC
Confidence            3468999999999999999999874

>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}

Probab=96.25  E-value=0.0028  Score=45.62  Aligned_cols=25  Identities=20%  Similarity=0.239  Sum_probs=21.9

Q ss_pred             CeeEEEEEecCCCcHHHHHHHHHHH
Q 039455           48 DVRFIGICGMGGIGKTTLAKVLYNT   72 (216)
Q Consensus        48 ~~~~i~I~G~~GiGKTtL~~~~~~~   72 (216)
                      ..-.|+|.|++|+|||||+..+.+.
T Consensus        15 ~~~ki~v~G~~~~GKSsli~~l~~~   39 (196)
T 3tkl_A           15 YLFKLLLIGDSGVGKSCLLLRFADD   39 (196)
T ss_dssp             EEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred             cceEEEEECcCCCCHHHHHHHHHcC
Confidence            3467999999999999999999873

>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8

Probab=96.24  E-value=0.0037  Score=44.76  Aligned_cols=25  Identities=24%  Similarity=0.256  Sum_probs=22.0

Q ss_pred             CCeeEEEEEecCCCcHHHHHHHHHH
Q 039455           47 DDVRFIGICGMGGIGKTTLAKVLYN   71 (216)
Q Consensus        47 ~~~~~i~I~G~~GiGKTtL~~~~~~   71 (216)
                      .....|+|.|.+|+|||||+..+.+
T Consensus        14 ~~~~~i~v~G~~~~GKssl~~~l~~   38 (187)
T 1zj6_A           14 HQEHKVIIVGLDNAGKTTILYQFSM   38 (187)
T ss_dssp             TSCEEEEEEESTTSSHHHHHHHHHT
T ss_pred             CCccEEEEECCCCCCHHHHHHHHhc
Confidence            3457899999999999999999985

>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8

Probab=96.23  E-value=0.0025  Score=46.28  Aligned_cols=24  Identities=25%  Similarity=0.213  Sum_probs=21.2

Q ss_pred             eeEEEEEecCCCcHHHHHHHHHHH
Q 039455           49 VRFIGICGMGGIGKTTLAKVLYNT   72 (216)
Q Consensus        49 ~~~i~I~G~~GiGKTtL~~~~~~~   72 (216)
                      .-.|+|+|.+|+|||||+..+.+.
T Consensus         8 ~~ki~v~G~~~~GKSsli~~l~~~   31 (203)
T 1zbd_A            8 MFKILIIGNSSVGKTSFLFRYADD   31 (203)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHTC
T ss_pred             eeEEEEECCCCCCHHHHHHHHhcC
Confidence            457999999999999999999863

>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}

Probab=96.22  E-value=0.0029  Score=45.93  Aligned_cols=25  Identities=20%  Similarity=0.297  Sum_probs=21.5

Q ss_pred             CeeEEEEEecCCCcHHHHHHHHHHH
Q 039455           48 DVRFIGICGMGGIGKTTLAKVLYNT   72 (216)
Q Consensus        48 ~~~~i~I~G~~GiGKTtL~~~~~~~   72 (216)
                      ....|+|.|.+|+|||||+..+.+.
T Consensus        27 ~~~ki~v~G~~~~GKSsli~~l~~~   51 (199)
T 2p5s_A           27 KAYKIVLAGDAAVGKSSFLMRLCKN   51 (199)
T ss_dssp             -CEEEEEESSTTSSHHHHHHHHHHC
T ss_pred             CCeEEEEECcCCCCHHHHHHHHHhC
Confidence            3478999999999999999999863

>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2

Probab=96.22  E-value=0.0029  Score=46.40  Aligned_cols=24  Identities=29%  Similarity=0.261  Sum_probs=20.9

Q ss_pred             eeEEEEEecCCCcHHHHHHHHHHH
Q 039455           49 VRFIGICGMGGIGKTTLAKVLYNT   72 (216)
Q Consensus        49 ~~~i~I~G~~GiGKTtL~~~~~~~   72 (216)
                      ...|+|+|.+|+|||||+..+.+.
T Consensus         7 ~~ki~vvG~~~~GKTsli~~l~~~   30 (214)
T 2fh5_B            7 QRAVLFVGLCDSGKTLLFVRLLTG   30 (214)
T ss_dssp             -CEEEEECSTTSSHHHHHHHHHHS
T ss_pred             CCEEEEECCCCCCHHHHHHHHhCC
Confidence            468999999999999999999863

>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}

Probab=96.22  E-value=0.0028  Score=45.99  Aligned_cols=24  Identities=29%  Similarity=0.436  Sum_probs=20.9

Q ss_pred             CeeEEEEEecCCCcHHHHHHHHHH
Q 039455           48 DVRFIGICGMGGIGKTTLAKVLYN   71 (216)
Q Consensus        48 ~~~~i~I~G~~GiGKTtL~~~~~~   71 (216)
                      ....|+|+|.+|+|||||++.+.+
T Consensus        22 ~~~ki~vvG~~~vGKSsLi~~l~~   45 (195)
T 3cbq_A           22 GIFKVMLVGESGVGKSTLAGTFGG   45 (195)
T ss_dssp             CEEEEEEECSTTSSHHHHHHHTCC
T ss_pred             cEEEEEEECCCCCCHHHHHHHHHh
Confidence            456899999999999999999853

>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}

Probab=96.22  E-value=0.0032  Score=48.30  Aligned_cols=23  Identities=26%  Similarity=0.445  Sum_probs=21.0

Q ss_pred             eEEEEEecCCCcHHHHHHHHHHH
Q 039455           50 RFIGICGMGGIGKTTLAKVLYNT   72 (216)
Q Consensus        50 ~~i~I~G~~GiGKTtL~~~~~~~   72 (216)
                      ..|+|.|++|+|||||+..+.+.
T Consensus         4 ~~i~lvG~~g~GKTTL~n~l~g~   26 (271)
T 3k53_A            4 KTVALVGNPNVGKTTIFNALTGL   26 (271)
T ss_dssp             EEEEEEECSSSSHHHHHHHHHTT
T ss_pred             eEEEEECCCCCCHHHHHHHHhCC
Confidence            57899999999999999999874

>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*

Probab=96.21  E-value=0.0041  Score=44.62  Aligned_cols=23  Identities=26%  Similarity=0.278  Sum_probs=21.0

Q ss_pred             eeEEEEEecCCCcHHHHHHHHHH
Q 039455           49 VRFIGICGMGGIGKTTLAKVLYN   71 (216)
Q Consensus        49 ~~~i~I~G~~GiGKTtL~~~~~~   71 (216)
                      ...|+|+|.+|+|||||+..+..
T Consensus        20 ~~ki~v~G~~~~GKSsli~~l~~   42 (189)
T 1z06_A           20 IFKIIVIGDSNVGKTCLTYRFCA   42 (189)
T ss_dssp             EEEEEEECCTTSSHHHHHHHHHH
T ss_pred             eEEEEEECCCCCCHHHHHHHHHc
Confidence            46899999999999999999986

>1cp2_A CP2, nitrogenase iron protein; oxidoreductase; 1.93A {Clostridium pasteurianum} SCOP: c.37.1.10

Probab=96.21  E-value=0.006  Score=46.49  Aligned_cols=35  Identities=31%  Similarity=0.430  Sum_probs=26.7

Q ss_pred             eEEEEEecCCCcHHHHHHHHHHHhcCCCCceEeec
Q 039455           50 RFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLA   84 (216)
Q Consensus        50 ~~i~I~G~~GiGKTtL~~~~~~~~~~~~~~~~~~~   84 (216)
                      ++|+|.|-||+||||++..++..+.+....+..++
T Consensus         2 ~vI~vs~KGGvGKTT~a~nLA~~la~~G~~VlliD   36 (269)
T 1cp2_A            2 RQVAIYGKGGIGKSTTTQNLTSGLHAMGKTIMVVG   36 (269)
T ss_dssp             EEEEEEECTTSSHHHHHHHHHHHHHTTTCCEEEEE
T ss_pred             cEEEEecCCCCcHHHHHHHHHHHHHHCCCcEEEEc
Confidence            46777899999999999999987765544455543

>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*

Probab=96.21  E-value=0.0033  Score=50.62  Aligned_cols=23  Identities=22%  Similarity=0.479  Sum_probs=20.9

Q ss_pred             eeEEEEEecCCCcHHHHHHHHHH
Q 039455           49 VRFIGICGMGGIGKTTLAKVLYN   71 (216)
Q Consensus        49 ~~~i~I~G~~GiGKTtL~~~~~~   71 (216)
                      ....+|+|++|+|||+++.+++-
T Consensus        25 ~gl~vi~G~NGaGKT~ileAI~~   47 (371)
T 3auy_A           25 KGIVAIIGENGSGKSSIFEAVFF   47 (371)
T ss_dssp             SEEEEEEECTTSSHHHHHHHHHH
T ss_pred             CCeEEEECCCCCCHHHHHHHHHH
Confidence            37899999999999999999874

>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8

Probab=96.20  E-value=0.0031  Score=45.31  Aligned_cols=24  Identities=29%  Similarity=0.356  Sum_probs=21.4

Q ss_pred             eeEEEEEecCCCcHHHHHHHHHHH
Q 039455           49 VRFIGICGMGGIGKTTLAKVLYNT   72 (216)
Q Consensus        49 ~~~i~I~G~~GiGKTtL~~~~~~~   72 (216)
                      .-.|+|+|.+|+|||||+..+.+.
T Consensus        15 ~~~i~v~G~~~~GKssli~~l~~~   38 (195)
T 1x3s_A           15 TLKILIIGESGVGKSSLLLRFTDD   38 (195)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred             ceEEEEECCCCCCHHHHHHHHHcC
Confidence            358999999999999999999874

>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*

Probab=96.20  E-value=0.0026  Score=45.40  Aligned_cols=24  Identities=25%  Similarity=0.256  Sum_probs=21.4

Q ss_pred             eeEEEEEecCCCcHHHHHHHHHHH
Q 039455           49 VRFIGICGMGGIGKTTLAKVLYNT   72 (216)
Q Consensus        49 ~~~i~I~G~~GiGKTtL~~~~~~~   72 (216)
                      ...|+|+|.+|+|||||+..+.+.
T Consensus        21 ~~~i~v~G~~~~GKSsli~~l~~~   44 (181)
T 2h17_A           21 EHKVIIVGLDNAGKTTILYQFSMN   44 (181)
T ss_dssp             CEEEEEEEETTSSHHHHHHHHHTT
T ss_pred             eeEEEEECCCCCCHHHHHHHHhcC
Confidence            468999999999999999999863

>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}

Probab=96.19  E-value=0.0037  Score=45.10  Aligned_cols=25  Identities=24%  Similarity=0.412  Sum_probs=21.8

Q ss_pred             CCeeEEEEEecCCCcHHHHHHHHHH
Q 039455           47 DDVRFIGICGMGGIGKTTLAKVLYN   71 (216)
Q Consensus        47 ~~~~~i~I~G~~GiGKTtL~~~~~~   71 (216)
                      .....|+|+|.+|+|||||+..+.+
T Consensus        15 ~~~~ki~v~G~~~~GKSsl~~~l~~   39 (199)
T 4bas_A           15 KTKLQVVMCGLDNSGKTTIINQVKP   39 (199)
T ss_dssp             -CEEEEEEECCTTSCHHHHHHHHSC
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHhc
Confidence            4567899999999999999999875

>3hdt_A Putative kinase; structura genomics, PSI-2, protein structure initiative, midwest CENT structural genomics, MCSG; 2.79A {Clostridium symbiosum atcc 14940}

Probab=96.19  E-value=0.0049  Score=46.02  Aligned_cols=26  Identities=27%  Similarity=0.160  Sum_probs=23.3

Q ss_pred             eeEEEEEecCCCcHHHHHHHHHHHhc
Q 039455           49 VRFIGICGMGGIGKTTLAKVLYNTLK   74 (216)
Q Consensus        49 ~~~i~I~G~~GiGKTtL~~~~~~~~~   74 (216)
                      ..+|+|.|+.|+||||+++.++.++.
T Consensus        14 ~~iI~i~g~~gsGk~~i~~~la~~lg   39 (223)
T 3hdt_A           14 NLIITIEREYGSGGRIVGKKLAEELG   39 (223)
T ss_dssp             CEEEEEEECTTSCHHHHHHHHHHHHT
T ss_pred             CeEEEEeCCCCCCHHHHHHHHHHHcC
Confidence            47999999999999999999998653

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	216
d2a5yb3	277	c.37.1.20 (B:109-385) CED-4, NB-ARC domain {Caenor	2e-23
d1odfa_	286	c.37.1.6 (A:) Hypothetical protein Ygr205W {Baker'	0.003

>d2a5yb3 c.37.1.20 (B:109-385) CED-4, NB-ARC domain {Caenorhabditis elegans [TaxId: 6239]} Length = 277

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: CED-4, NB-ARC domain
species: Caenorhabditis elegans [TaxId: 6239]

 Score = 92.6 bits (229), Expect = 2e-23
 Identities = 28/189 (14%), Positives = 56/189 (29%), Gaps = 17/189 (8%)

Query: 28  LVGIASRMEKMNGYL-EAGLDDVRFIGICGMGGIGKTTLAKVLYN----TLKDQFEASSF 82
                  ++++   L E    D  F+ + G  G GK+ +A    +     +   +++  +
Sbjct: 22  CYIREYHVDRVIKKLDEMCDLDSFFLFLHGRAGSGKSVIASQALSKSDQLIGINYDSIVW 81

Query: 83  LANVREVSVTRGLVPLQEQLLSEVLME-----RNLIIWDVHKGINLIRWRLCRKRVLVVL 137
           L +      +   +     L+ +   +         +  V     +    + R   L V 
Sbjct: 82  LKDSGTAPKSTFDLFTDILLMLKSEDDLLNFPSVEHVTSVVLKRMICNALIDRPNTLFVF 141

Query: 138 DDVDQLEQLQALAGNHDWFGFGSRIIITTRDEHVLKG-HGVTNIYKVRGLDYVEALQLFH 196
           DDV Q E                R ++TTRD  +           +V  L+  E      
Sbjct: 142 DDVVQEET------IRWAQELRLRCLVTTRDVEISNAASQTCEFIEVTSLEIDECYDFLE 195

Query: 197 LKVSKGKQP 205
                    
Sbjct: 196 AYGMPMPVG 204

>d1odfa_ c.37.1.6 (A:) Hypothetical protein Ygr205W {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 286

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Hypothetical protein Ygr205W
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 35.5 bits (81), Expect = 0.003
 Identities = 16/85 (18%), Positives = 34/85 (40%), Gaps = 4/85 (4%)

Query: 51  FIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLANVREVSVTRGLVPLQEQL-LSEVLME 109
           FI   G  G GK+  +  +YN L +++       ++   S+    +  ++QL L+E    
Sbjct: 29  FIFFSGPQGSGKSFTSIQIYNHLMEKYG---GEKSIGYASIDDFYLTHEDQLKLNEQFKN 85

Query: 110 RNLIIWDVHKGINLIRWRLCRKRVL 134
             L+      G + ++        +
Sbjct: 86  NKLLQGRGLPGTHDMKLLQEVLNTI 110

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	216
d2a5yb3	277	CED-4, NB-ARC domain {Caenorhabditis elegans [TaxI	99.95
d2fnaa2	283	Archaeal ATPase SSO1545 {Sulfolobus solfataricus [	99.56
d1fnna2	276	CDC6, N-domain {Archaeon Pyrobaculum aerophilum [T	99.47
d1r6bx2	268	ClpA, an Hsp100 chaperone, AAA+ modules {Escherich	99.45
d1jbka_	195	ClpB, AAA+ modules {Escherichia coli [TaxId: 562]}	99.39
d1sxjc2	227	Replication factor C3 {Baker's yeast (Saccharomyce	99.38
d1l8qa2	213	Chromosomal replication initiation factor DnaA {Aq	99.37
d1sxjb2	224	Replication factor C4 {Baker's yeast (Saccharomyce	99.32
d1ixza_	247	AAA domain of cell division protein FtsH {Thermus	99.31
d1sxje2	252	Replication factor C5 {Baker's yeast (Saccharomyce	99.3
d1sxjd2	237	Replication factor C2 {Baker's yeast (Saccharomyce	99.3
d1iqpa2	231	Replication factor C {Archaeon Pyrococcus furiosus	99.3
d1lv7a_	256	AAA domain of cell division protein FtsH {Escheric	99.29
d1e32a2	258	Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu	99.28
d1w5sa2	287	CDC6-like protein APE0152, N-terminal domain {Aero	99.25
d1njfa_	239	delta prime subunit of DNA polymerase III, N-domai	99.25
d1qvra2	387	ClpB, AAA+ modules {Thermus thermophilus [TaxId: 2	99.23
d1sxja2	253	Replication factor C1 {Baker's yeast (Saccharomyce	99.16
d1r7ra3	265	Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu	99.15
d1in4a2	238	Holliday junction helicase RuvB {Thermotoga mariti	99.13
d1d2na_	246	Hexamerization domain of N-ethylmalemide-sensitive	99.03
d1ixsb2	239	Holliday junction helicase RuvB {Thermus thermophi	99.0
d1a5ta2	207	delta prime subunit of DNA polymerase III, N-domai	98.96
d1vpla_	238	Putative ABC transporter TM0544 {Thermotoga mariti	98.85
d2awna2	232	Maltose transport protein MalK, N-terminal domain	98.81
d1g2912	240	Maltose transport protein MalK, N-terminal domain	98.78
d1v43a3	239	Hypothetical protein PH0022, N-terminal domain {Py	98.76
d1oxxk2	242	Glucose transport protein GlcV, N-terminal domain	98.76
d1l2ta_	230	MJ0796 {Archaeon Methanococcus jannaschii [TaxId:	98.74
d1r0wa_	281	Cystic fibrosis transmembrane conductance regulato	98.74
d3dhwc1	240	Methionine import ATP-binding protein MetN {Escher	98.74
d1ji0a_	240	Branched chain aminoacid ABC transporter {Thermoto	98.73
d1b0ua_	258	ATP-binding subunit of the histidine permease {Sal	98.7
d3d31a2	229	Sulfate/molybdate ABC transporter, ATP-binding pro	98.68
d1ye8a1	178	Hypothetical kinase-like protein Aq_1292 {Aquifex	98.65
d1g6ha_	254	MJ1267 {Archaeon Methanococcus jannaschii [TaxId:	98.63
d3b60a1	253	Multidrug resistance ABC transporter MsbA, C-termi	98.61
d2pmka1	241	Haemolysin B ATP-binding protein {Escherichia coli	98.58
d2onka1	240	Molybdate/tungstate import ATP-binding protein Wtp	98.56
d1jj7a_	251	Peptide transporter Tap1, C-terminal ABC domain {H	98.56
d1mv5a_	242	Multidrug resistance ABC transporter LmrA, C-termi	98.53
d1ny5a2	247	Transcriptional activator sigm54 (NtrC1), C-termin	98.53
d1l7vc_	231	ABC transporter involved in vitamin B12 uptake, Bt	98.51
d1sgwa_	200	Putative ABC transporter PF0895 {Pyrococcus furios	98.5
d2hyda1	255	Putative multidrug export ATP-binding/permease pro	98.46
d2gnoa2	198	gamma subunit of DNA polymerase III, N-domain {The	98.46
d1r6bx3	315	ClpA, an Hsp100 chaperone, AAA+ modules {Escherich	98.35
d1ofha_	309	HslU {Haemophilus influenzae [TaxId: 727]}	98.28
d1qvra3	315	ClpB, AAA+ modules {Thermus thermophilus [TaxId: 2	98.22
d2i3ba1	189	Cancer-related NTPase, C1orf57 {Human (Homo sapien	98.19
d1np6a_	170	Molybdopterin-guanine dinucleotide biosynthesis pr	98.13
d1gvnb_	273	Plasmid maintenance system epsilon/zeta, toxin zet	98.13
d1rz3a_	198	Hypothetical protein rbstp0775 {Bacillus stearothe	98.12
d1m8pa3	183	ATP sulfurylase C-terminal domain {Fungus (Penicil	98.1
d1x6va3	195	Adenosine-5'phosphosulfate kinase (APS kinase) {Hu	98.09
d1w44a_	321	NTPase P4 {Bacteriophage phi-12 [TaxId: 161736]}	98.08
d1kaga_	169	Shikimate kinase (AroK) {Escherichia coli [TaxId:	98.08
d1lw7a2	192	Transcriptional regulator NadR, ribosylnicotinamid	98.08
d2qy9a2	211	GTPase domain of the signal recognition particle r	98.05
d1okkd2	207	GTPase domain of the signal recognition particle r	98.03
d2bdta1	176	Hypothetical protein BH3686 {Bacillus halodurans [	98.02
d1knqa_	171	Gluconate kinase {Escherichia coli [TaxId: 562]}	98.02
d1rkba_	173	Adenylate kinase {Human (Homo sapiens), isoenzyme	98.0
d1vmaa2	213	GTPase domain of the signal recognition particle r	98.0
d1ly1a_	152	Polynucleotide kinase, kinase domain {Bacteriophag	97.99
d1y63a_	174	Probable kinase LmjF30.1890 {Leishmania major [Tax	97.99
d1qhxa_	178	Chloramphenicol phosphotransferase {Streptomyces v	97.97
d1j8yf2	211	GTPase domain of the signal sequence recognition p	97.94
d1qf9a_	194	UMP/CMP kinase {Dictyostelium discoideum [TaxId: 4	97.94
d1khta_	190	Adenylate kinase {Archaeon Methanococcus voltae [T	97.92
d1zp6a1	176	Hypothetical protein Atu3015 {Agrobacterium tumefa	97.91
d1ukza_	196	Uridylate kinase {Baker's yeast (Saccharomyces cer	97.88
d1ls1a2	207	GTPase domain of the signal sequence recognition p	97.86
d1xjca_	165	Molybdopterin-guanine dinucleotide biosynthesis pr	97.83
d2iyva1	165	Shikimate kinase (AroK) {Mycobacterium tuberculosi	97.82
d1mo6a1	269	RecA protein, ATPase-domain {Mycobacterium tubercu	97.81
d1e6ca_	170	Shikimate kinase (AroK) {Erwinia chrysanthemi [Tax	97.81
d1nksa_	194	Adenylate kinase {Archaeon Sulfolobus acidocaldari	97.81
d2qm8a1	323	Metallochaperone MeaB {Methylobacterium extorquens	97.77
d1p9ra_	401	Extracellular secretion NTPase EpsE {Vibrio choler	97.76
d2p67a1	327	LAO/AO transport system kinase ArgK {Escherichia c	97.76
d1viaa_	161	Shikimate kinase (AroK) {Campylobacter jejuni [Tax	97.76
d1tf7a2	242	Circadian clock protein KaiC {Synechococcus sp. st	97.75
d1u94a1	263	RecA protein, ATPase-domain {Escherichia coli [Tax	97.73
d1wb9a2	234	DNA repair protein MutS, the C-terminal domain {Es	97.72
d1zaka1	189	Adenylate kinase {Maize (Zea mays) [TaxId: 4577]}	97.71
d1yj5a2	172	5' polynucleotide kinase-3' phosphatase, C-termina	97.7
d1bifa1	213	6-phosphofructo-2-kinase/fructose-2,6-bisphosphata	97.7
d1teva_	194	UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606]	97.7
d1gkya_	186	Guanylate kinase {Baker's yeast (Saccharomyces cer	97.68
d1znwa1	182	Guanylate kinase {Mycobacterium tuberculosis [TaxI	97.66
d1ckea_	225	CMP kinase {Escherichia coli [TaxId: 562]}	97.66
d1ak2a1	190	Adenylate kinase {Cow (Bos taurus), mitochondrial	97.66
d1svma_	362	Papillomavirus large T antigen helicase domain {Si	97.65
d3adka_	194	Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]}	97.65
d1m7ga_	208	Adenosine-5'phosphosulfate kinase (APS kinase) {Fu	97.62
d1zina1	182	Adenylate kinase {Bacillus stearothermophilus [Tax	97.62
d1xp8a1	268	RecA protein, ATPase-domain {Deinococcus radiodura	97.61
d1lvga_	190	Guanylate kinase {Mouse (Mus musculus) [TaxId: 100	97.61
d1kgda_	178	Guanylate kinase-like domain of Cask {Human (Homo	97.6
d1nn5a_	209	Thymidylate kinase {Human (Homo sapiens) [TaxId: 9	97.57
d1uj2a_	213	Uridine-cytidine kinase 2 {Human (Homo sapiens) [T	97.57
d2cdna1	181	Adenylate kinase {Mycobacterium tuberculosis [TaxI	97.55
d1sq5a_	308	Pantothenate kinase PanK {Escherichia coli [TaxId:	97.55
d1s3ga1	182	Adenylate kinase {Bacillus globisporus [TaxId: 145	97.54
d1ewqa2	224	DNA repair protein MutS, the C-terminal domain {Th	97.54
d1g6oa_	323	Hexameric traffic ATPase, HP0525 {Helicobacter pyl	97.54
d1q3ta_	223	CMP kinase {Streptococcus pneumoniae [TaxId: 1313]	97.53
d1s96a_	205	Guanylate kinase {Escherichia coli [TaxId: 562]}	97.52
d2ak3a1	189	Adenylate kinase {Cow (Bos taurus), mitochondrial	97.49
d1akya1	180	Adenylate kinase {Baker's yeast (Saccharomyces cer	97.43
d1e4va1	179	Adenylate kinase {Escherichia coli [TaxId: 562]}	97.43
d1n0wa_	242	DNA repair protein Rad51, catalytic domain {Human	97.4
d1pzna2	254	DNA repair protein Rad51, catalytic domain {Archae	97.39
d1v5wa_	258	Meiotic recombination protein DMC1/LIM15 homolog {	97.38
d2i1qa2	258	DNA repair protein Rad51, catalytic domain {Archae	97.35
d1yrba1	244	ATP(GTP)-binding protein PAB0955 {Pyrococcus abyss	97.35
d2jdid3	276	Central domain of beta subunit of F1 ATP synthase	97.27
d1szpa2	251	DNA repair protein Rad51, catalytic domain {Baker'	97.26
d1uf9a_	191	Dephospho-CoA kinase {Thermus thermophilus [TaxId:	97.19
d1ihua2	279	Arsenite-translocating ATPase ArsA {Escherichia co	97.14
d1odfa_	286	Hypothetical protein Ygr205W {Baker's yeast (Sacch	97.12
d1a7ja_	288	Phosphoribulokinase {Rhodobacter sphaeroides [TaxI	97.11
d1u0la2	225	Probable GTPase EngC (YjeQ), C-terminal domain {Th	97.1
d1xpua3	289	Transcription termination factor Rho, ATPase domai	97.1
d1g8pa_	333	ATPase subunit of magnesium chelatase, BchI {Rhodo	97.1
d1r8sa_	160	ADP-ribosylation factor {Human (Homo sapiens), ARF	97.09
d2vp4a1	197	Deoxyribonucleoside kinase {Fruit fly (Drosophila	97.08
d1cp2a_	269	Nitrogenase iron protein {Clostridium pasteurianum	97.08
d1f6ba_	186	SAR1 {Chinese hamster (Cricetulus griseus) [TaxId:	97.07
d1tf7a1	242	Circadian clock protein KaiC {Synechococcus sp. st	97.05
d1gsia_	208	Thymidylate kinase {Mycobacterium tuberculosis [Ta	96.99
d1um8a_	364	ClpX {Helicobacter pylori [TaxId: 210]}	96.97
d1upta_	169	ADP-ribosylation factor {Human (Homo sapiens), ARL	96.95
d1zj6a1	177	ADP-ribosylation factor {Human (Homo sapiens), ARL	96.92
d1h65a_	257	Chloroplast protein translocon GTPase Toc34 {Garde	96.92
d1tmka_	214	Thymidylate kinase {Baker's yeast (Saccharomyces c	96.92
d1svia_	195	Probable GTPase EngB {Bacillus subtilis [TaxId: 14	96.91
g1f2t.1	292	Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]}	96.86
d4tmka_	210	Thymidylate kinase {Escherichia coli [TaxId: 562]}	96.85
d2a5ja1	173	Rab2b {Human (Homo sapiens) [TaxId: 9606]}	96.85
d1ihua1	296	Arsenite-translocating ATPase ArsA {Escherichia co	96.84
d1z0fa1	166	Rab14 {Human (Homo sapiens) [TaxId: 9606]}	96.83
d1nrjb_	209	Signal recognition particle receptor beta-subunit	96.83
d1jjva_	205	Dephospho-CoA kinase {Haemophilus influenzae [TaxI	96.83
d1kkma_	176	HPr kinase HprK C-terminal domain {Lactobacillus c	96.83
d1z2aa1	164	Rab23 {Mouse (Mus musculus) [TaxId: 10090]}	96.83
d1fzqa_	176	ADP-ribosylation factor {Mouse (Mus musculus), ARL	96.82
d1vhta_	208	Dephospho-CoA kinase {Escherichia coli [TaxId: 562	96.8
d3raba_	169	Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]}	96.79
d1p5zb_	241	Deoxycytidine kinase {Human (Homo sapiens) [TaxId:	96.79
d2qtvb1	166	SAR1 {Baker's yeast (Saccharomyces cerevisiae) [Ta	96.79
d1kaoa_	167	Rap2a {Human (Homo sapiens) [TaxId: 9606]}	96.78
d1knxa2	177	HPr kinase HprK C-terminal domain {Mycoplasma pneu	96.77
d2ew1a1	171	Rab30 {Human (Homo sapiens) [TaxId: 9606]}	96.76
d1htwa_	158	Hypothetical protein HI0065 {Haemophilus influenza	96.76
d1xtqa1	167	GTP-binding protein RheB {Human (Homo sapiens) [Ta	96.75
d2atva1	168	Ras-like estrogen-regulated growth inhibitor, RERG	96.74
d1tuea_	205	Replication protein E1 helicase domain {Human papi	96.74
d1z06a1	165	Rab-33b {Mouse (Mus musculus) [TaxId: 10090]}	96.74
d1yzqa1	164	Rab6 {Human (Homo sapiens) [TaxId: 9606]}	96.73
d1g41a_	443	HslU {Haemophilus influenzae [TaxId: 727]}	96.73
d1z08a1	167	Rab21 {Human (Homo sapiens) [TaxId: 9606]}	96.73
d1ksha_	165	ADP-ribosylation factor {Mouse (Mus musculus), ARL	96.73
d2erya1	171	r-Ras2 {Human (Homo sapiens) [TaxId: 9606]}	96.73
d1mkya1	171	Probable GTPase Der, N-terminal and middle domains	96.73
d2ocpa1	241	Deoxyguanosine kinase {Human (Homo sapiens) [TaxId	96.72
d1ky3a_	175	Rab-related protein ypt7p {Baker's yeast (Saccharo	96.72
d1ko7a2	169	HPr kinase HprK C-terminal domain {Staphylococcus	96.71
d1g16a_	166	Rab-related protein Sec4 {Baker's yeast (Saccharom	96.71
d2afhe1	289	Nitrogenase iron protein {Azotobacter vinelandii [	96.71
d2fh5b1	207	Signal recognition particle receptor beta-subunit	96.7
d2fn4a1	173	r-Ras {Human (Homo sapiens) [TaxId: 9606]}	96.69
d2erxa1	171	di-Ras2 {Human (Homo sapiens) [TaxId: 9606]}	96.68
d1ctqa_	166	cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9	96.68
d1deka_	241	Deoxynucleoside monophosphate kinase {Bacteriophag	96.68
d1kmqa_	177	RhoA {Human (Homo sapiens) [TaxId: 9606]}	96.67
d1z0ja1	167	Rab-22a {Mouse (Mus musculus) [TaxId: 10090]}	96.66
d1mh1a_	183	Rac {Human (Homo sapiens) [TaxId: 9606]}	96.66
d1r2qa_	170	Rab5a {Human (Homo sapiens) [TaxId: 9606]}	96.66
d2f9la1	175	Rab11b {Human (Homo sapiens) [TaxId: 9606]}	96.63
d1c1ya_	167	Rap1A {Human (Homo sapiens) [TaxId: 9606]}	96.63
d2fz4a1	206	DNA repair protein RAD25 {Archaeoglobus fulgidus [	96.62
d1ek0a_	170	Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [T	96.62
d2gjsa1	168	Rad {Human (Homo sapiens) [TaxId: 9606]}	96.6
d1nija1	222	Hypothetical protein YjiA, N-terminal domain {Esch	96.6
d2g6ba1	170	Rab26 {Human (Homo sapiens) [TaxId: 9606]}	96.59
d1cr2a_	277	Gene 4 protein (g4p, DNA primase), helicase domain	96.59
g1ii8.1	369	Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]}	96.59
d2bmea1	174	Rab4a {Human (Homo sapiens) [TaxId: 9606]}	96.59
d1zd9a1	164	ADP-ribosylation factor {Human (Homo sapiens), ARL	96.58
d1wf3a1	178	GTPase Era, N-terminal domain {Thermus thermophilu	96.58
d1w36d1	359	Exodeoxyribonuclease V alpha chain (RecD) {Escheri	96.56
d1vg8a_	184	Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]}	96.56
d1byia_	224	Dethiobiotin synthetase {Escherichia coli [TaxId:	96.56
d2f7sa1	186	Rab27b {Human (Homo sapiens) [TaxId: 9606]}	96.55
d2cxxa1	184	GTP-binding protein engB {Pyrococcus horikoshii [T	96.54
d2bcgy1	194	GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisi	96.53
d2gj8a1	161	Probable tRNA modification GTPase TrmE (MnmE), G d	96.51
d1wmsa_	174	Rab9a {Human (Homo sapiens) [TaxId: 9606]}	96.51
d1u8za_	168	Ras-related protein RalA {Cotton-top tamarin (Sagu	96.48
d2atxa1	185	RhoQ {Human (Homo sapiens) [TaxId: 9606]}	96.48
d1m7ba_	179	RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]}	96.47
d1u0ja_	267	Rep 40 protein helicase domain {Adeno-associated v	96.47
d1x3sa1	177	Rab18 {Human (Homo sapiens) [TaxId: 9606]}	96.46
d2ngra_	191	CDC42 {Human (Homo sapiens) [TaxId: 9606]}	96.46
d1fx0a3	276	Central domain of alpha subunit of F1 ATP synthase	96.45
d1x1ra1	169	Ras-related protein M-Ras (XRas) {Mouse (Mus muscu	96.45
d1qhla_	222	Cell division protein MukB {Escherichia coli [TaxI	96.43
g1xew.1	329	Smc head domain {Pyrococcus furiosus [TaxId: 2261]	96.42
d2g3ya1	172	GTP-binding protein GEM {Human (Homo sapiens) [Tax	96.4
d1egaa1	179	GTPase Era, N-terminal domain {Escherichia coli [T	96.36
d1osna_	331	Thymidine kinase {Varicella-zoster virus [TaxId: 1	96.35
d1hyqa_	232	Cell division regulator MinD {Archaeon Archaeoglob	96.33
d1zcba2	200	Transducin (alpha subunit) {Mouse (Mus musculus) [	96.32
d1i2ma_	170	Ran {Human (Homo sapiens) [TaxId: 9606]}	96.3
d1puia_	188	Probable GTPase EngB {Escherichia coli [TaxId: 562	96.29
d2bmja1	175	Centaurin gamma 1, G domain {Human (Homo sapiens)	96.29
d1moza_	182	ADP-ribosylation factor {Baker's yeast (Saccharomy	96.29
d1svsa1	195	Transducin (alpha subunit) {Rat (Rattus norvegicus	96.27
d1e0sa_	173	ADP-ribosylation factor {Human (Homo sapiens), ARF	96.26
d1lnza2	185	Obg GTP-binding protein middle domain {Bacillus su	96.24
d2bcjq2	200	Transducin (alpha subunit) {Mouse (Mus musculus) [	96.23
d1g3qa_	237	Cell division regulator MinD {Archaeon Pyrococcus	96.15
d1nlfa_	274	Hexameric replicative helicase repA {Escherichia c	96.14
d1t9ha2	231	Probable GTPase EngC (YjeQ), C-terminal domain {Ba	96.09
d1udxa2	180	Obg GTP-binding protein middle domain {Thermus the	96.07
d2fu5c1	173	Rab8a {Mouse (Mus musculus) [TaxId: 10090]}	96.07
d1e69a_	308	Smc head domain {Thermotoga maritima [TaxId: 2336]	96.06
d1mkya2	186	Probable GTPase Der, N-terminal and middle domains	96.03
d1azta2	221	Transducin (alpha subunit) {Cow (Bos taurus) [TaxI	95.99
d1xzpa2	160	TrmE GTPase domain {Thermotoga maritima [TaxId: 23	95.85
d1w1wa_	427	Smc head domain {Baker's yeast (Saccharomyces cere	95.78
d1tq4a_	400	Interferon-inducible GTPase {Mouse (Mus musculus)	95.71
d1pjra1	318	DEXX box DNA helicase {Bacillus stearothermophilus	95.69
d1uaaa1	306	DEXX box DNA helicase {Escherichia coli, RepD [Tax	95.68
d2jdia3	285	Central domain of alpha subunit of F1 ATP synthase	95.67
d1p6xa_	333	Thymidine kinase {Equine herpesvirus type 4 [TaxId	95.56
d2eyqa3	233	Transcription-repair coupling factor, TRCF {Escher	95.31
d1e9ra_	433	Bacterial conjugative coupling protein TrwB {Esche	94.88
d1gkub1	237	Helicase-like "domain" of reverse gyrase {Archaeon	94.76
d2bv3a2	276	Elongation factor G (EF-G), N-terminal (G) domain	94.75
d1f5na2	277	Interferon-induced guanylate-binding protein 1 (GB	94.64
d1wb1a4	179	Elongation factor SelB, N-terminal domain {Methano	94.61
d1puja_	273	Probable GTPase YlqF {Bacillus subtilis [TaxId: 14	94.55
d2dy1a2	267	Elongation factor G (EF-G), N-terminal (G) domain	94.46
d1a1va1	136	HCV helicase domain {Human hepatitis C virus (HCV)	94.44
d1g7sa4	227	Initiation factor IF2/eIF5b, N-terminal (G) domain	94.37
d1e2ka_	329	Thymidine kinase {Herpes simplex virus type 1, dif	94.15
d1g8fa3	122	ATP sulfurylase C-terminal domain {Baker's yeast (	94.05
d2p6ra3	202	Hel308 helicase {Archaeoglobus fulgidus [TaxId: 22	94.03
d1yksa1	140	YFV helicase domain {Yellow fever virus [TaxId: 11	93.79
g1f2t.1	292	Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]}	93.76
d1hv8a1	208	Putative DEAD box RNA helicase {Archaeon Methanoco	93.7
d2j0sa1	222	Probable ATP-dependent RNA helicase DDX48 {Human (	93.41
d1n0ua2	341	Elongation factor 2 (eEF-2), N-terminal (G) domain	93.38
d1wp9a1	200	putative ATP-dependent RNA helicase PF2015 {Pyroco	93.3
d2g9na1	218	Initiation factor 4a {Human (Homo sapiens) [TaxId:	93.28
d1gm5a3	264	RecG helicase domain {Thermotoga maritima [TaxId:	92.96
d1d0xa2	712	Myosin S1, motor domain {Dictyostelium discoideum	92.43
d1qdea_	212	Initiation factor 4a {Baker's yeast (Saccharomyces	92.37
d1ni3a1	296	YchF GTP-binding protein N-terminal domain {Fissio	92.08
d1lkxa_	684	Myosin S1, motor domain {Dictyostelium discoideum,	92.07
d1j3ba1	318	Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxalo	92.05
d2bmfa2	305	Dengue virus helicase {Dengue virus type 2 [TaxId:	91.9
d1jala1	278	YchF GTP-binding protein N-terminal domain {Haemop	91.9
d2olra1	313	Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxalo	91.77
d1kk8a2	789	Myosin S1, motor domain {Bay scallop (Aequipecten	91.62
d2mysa2	794	Myosin S1, motor domain {Chicken (Gallus gallus),	91.59
d1br2a2	710	Myosin S1, motor domain {Chicken (Gallus gallus),	91.58
d2c78a3	204	Elongation factor Tu (EF-Tu), N-terminal (G) domai	91.42
d1wxqa1	319	GTP-binding protein PH0525 {Pyrococcus horikoshii	91.4
d2akab1	299	Dynamin G domain {Rat (Rattus norvegicus) [TaxId:	91.38
d1g5ta_	157	ATP:corrinoid adenosyltransferase CobA {Salmonella	91.11
d1w7ja2	730	Myosin S1, motor domain {Chicken (Gallus gallus),	90.99
d1ii2a1	323	Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxalo	90.88
g1qhh.1	623	DEXX box DNA helicase {Bacillus stearothermophilus	90.62
d1jwyb_	306	Dynamin G domain {Dictyostelium discoideum [TaxId:	90.49
d1c9ka_	180	Adenosylcobinamide kinase/adenosylcobinamide phosp	90.43
d1t6na_	207	Spliceosome RNA helicase BAT1 (UAP56) {Human (Homo	89.16
d1w36b1	485	Exodeoxyribonuclease V beta chain (RecB), N-termin	88.98
d1rifa_	282	DNA helicase UvsW {Bacteriophage T4 [TaxId: 10665]	86.59
d1t5la1	413	Nucleotide excision repair enzyme UvrB {Bacillus c	85.98
d1p3da1	96	UDP-N-acetylmuramate-alanine ligase MurC {Haemophi	85.89
d2b4aa1	118	Hypothetical protein BH3024 {Bacillus halodurans [	85.56
d1kk1a3	195	Initiation factor eIF2 gamma subunit, N-terminal (	84.98
d1d2ea3	196	Elongation factor Tu (EF-Tu), N-terminal (G) domai	84.9
d1jnya3	224	Elongation factor eEF-1alpha, N-terminal (G) domai	84.89
g1ii8.1	369	Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]}	83.97
d2qn6a3	205	Initiation factor eIF2 gamma subunit, N-terminal (	83.69
d1zunb3	222	Sulfate adenylate transferase subunit cysN/C, EF-T	83.36
d1e69a_	308	Smc head domain {Thermotoga maritima [TaxId: 2336]	81.72
d1oywa2	206	RecQ helicase domain {Escherichia coli [TaxId: 562	81.16
d1c4oa1	408	Nucleotide excision repair enzyme UvrB {Thermus th	80.5
d1bg2a_	323	Kinesin {Human (Homo sapiens) [TaxId: 9606]}	80.2

>d2a5yb3 c.37.1.20 (B:109-385) CED-4, NB-ARC domain {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: CED-4, NB-ARC domain
species: Caenorhabditis elegans [TaxId: 6239]

Probab=99.95  E-value=3.3e-27  Score=182.83  Aligned_cols=171  Identities=18%  Similarity=0.116  Sum_probs=122.2

Q ss_pred             ccccccchhHHHHHHHHHhc-CCCCeeEEEEEecCCCcHHHHHHHHHHH----hcCCCCceEeeccccccccccCchHHH
Q 039455           25 VDGLVGIASRMEKMNGYLEA-GLDDVRFIGICGMGGIGKTTLAKVLYNT----LKDQFEASSFLANVREVSVTRGLVPLQ   99 (216)
Q Consensus        25 ~~~~vgR~~~~~~l~~~l~~-~~~~~~~i~I~G~~GiGKTtL~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~   99 (216)
                      ...++||+.++++|..+|.. ...+..+|+|+|++|+||||||++++++    ....|+.++|+...+.    .+...+.
T Consensus        19 ~~~~~gR~~~~~~i~~~L~~~~~~~~~~v~I~GmgGiGKTtLA~~v~~~~~~~~~~~f~~~~Wv~vs~~----~~~~~l~   94 (277)
T d2a5yb3          19 QMTCYIREYHVDRVIKKLDEMCDLDSFFLFLHGRAGSGKSVIASQALSKSDQLIGINYDSIVWLKDSGT----APKSTFD   94 (277)
T ss_dssp             CCCSCCCHHHHHHHHHHHHHHTTSSSEEEEEECSTTSSHHHHHHHHHHHCSSTBTTTBSEEEEEECCCC----STTHHHH
T ss_pred             CCceeCcHHHHHHHHHHHHhccCCCceEEEEECCCCCCHHHHHHHHHHhhhhhhhhcCceEEEEEecCC----CCHHHHH
Confidence            34477999999999998864 3455789999999999999999999986    3445788999974332    2222222


Q ss_pred             H---HHHHHHHhhccccc------cchhhhHHHHHHHhCCceEEEEEeCCCCHHHHHHhhcCCCCCCCCcEEEEEeCCch
Q 039455          100 E---QLLSEVLMERNLII------WDVHKGINLIRWRLCRKRVLVVLDDVDQLEQLQALAGNHDWFGFGSRIIITTRDEH  170 (216)
Q Consensus       100 ~---~l~~~~~~~~~~~~------~~~~~~~~~l~~~l~~~~~llvlDd~~~~~~~~~l~~~~~~~~~~~~il~tsr~~~  170 (216)
                      .   .++...........      .+.......+...+.++++++||||+|+.+++..+..      .+++||+|||+..
T Consensus        95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~kr~LlVLDDv~~~~~~~~~~~------~~srilvTTR~~~  168 (277)
T d2a5yb3          95 LFTDILLMLKSEDDLLNFPSVEHVTSVVLKRMICNALIDRPNTLFVFDDVVQEETIRWAQE------LRLRCLVTTRDVE  168 (277)
T ss_dssp             HHHHHHHHHTTTSCCTTCCCCTTCCHHHHHHHHHHHHTTSTTEEEEEEEECCHHHHHHHHH------TTCEEEEEESBGG
T ss_pred             HHHHHHHHHhcchhhcCCccchhhhhHHHHHHHHHHHhccCCeeEecchhhHHhhhhhhcc------cCceEEEEeehHH
Confidence            2   22222221111111      1112223356777889999999999999998887653      3689999999999


Q ss_pred             hhhccCCc-ceEEecCCChHHHHHHHhhhhcCCCCC
Q 039455          171 VLKGHGVT-NIYKVRGLDYVEALQLFHLKVSKGKQP  205 (216)
Q Consensus       171 ~~~~~~~~-~~~~l~~l~~~~~~~ll~~~~~~~~~~  205 (216)
                      ++...... +.+++++|+.++|++||.++++....+
T Consensus       169 v~~~~~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~  204 (277)
T d2a5yb3         169 ISNAASQTCEFIEVTSLEIDECYDFLEAYGMPMPVG  204 (277)
T ss_dssp             GGGGCCSCEEEEECCCCCHHHHHHHHHHTSCCCC--
T ss_pred             HHHhcCCCCceEECCCCCHHHHHHHHHHHhCCccCc
Confidence            88876543 679999999999999999988765533

>d2fnaa2 c.37.1.20 (A:1-283) Archaeal ATPase SSO1545 {Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Archaeal ATPase SSO1545
species: Sulfolobus solfataricus [TaxId: 2287]

Probab=99.56  E-value=4.6e-14  Score=107.56  Aligned_cols=170  Identities=15%  Similarity=0.151  Sum_probs=94.2

Q ss_pred             CCCCCcccccccchhHHHHHHHHHhcCCCCeeEEEEEecCCCcHHHHHHHHHHHhcCCCCceEeecccccccccc-CchH
Q 039455           19 PTFPSAVDGLVGIASRMEKMNGYLEAGLDDVRFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLANVREVSVTR-GLVP   97 (216)
Q Consensus        19 ~~~~~~~~~~vgR~~~~~~l~~~l~~~~~~~~~i~I~G~~GiGKTtL~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~   97 (216)
                      +.|...++.|+||++++++|.+.      ..+.++|+|++|+|||+|+++++......+   .|+.+........ ....
T Consensus         5 ~~p~~~~~~f~GR~~el~~l~~~------~~~~i~i~G~~G~GKTsLl~~~~~~~~~~~---~~i~~~~~~~~~~~~~~~   75 (283)
T d2fnaa2           5 TSPKDNRKDFFDREKEIEKLKGL------RAPITLVLGLRRTGKSSIIKIGINELNLPY---IYLDLRKFEERNYISYKD   75 (283)
T ss_dssp             SSCCCSGGGSCCCHHHHHHHHHT------CSSEEEEEESTTSSHHHHHHHHHHHHTCCE---EEEEGGGGTTCSCCCHHH
T ss_pred             CCCCCChhhCCChHHHHHHHHhc------cCCEEEEEcCCCCcHHHHHHHHHHHCCCCe---EEEEeccccccccccHHH
Confidence            34445689999999999999873      236899999999999999999998775443   2332211111111 1222


Q ss_pred             HHHHHHHHHHhhcc-------------------------ccccchhhhHHHHHHH--hCCceEEEEEeCCCCH-------
Q 039455           98 LQEQLLSEVLMERN-------------------------LIIWDVHKGINLIRWR--LCRKRVLVVLDDVDQL-------  143 (216)
Q Consensus        98 ~~~~l~~~~~~~~~-------------------------~~~~~~~~~~~~l~~~--l~~~~~llvlDd~~~~-------  143 (216)
                      +...+.........                         ............+...  ..++++++++|+++..       
T Consensus        76 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~i~id~~~~~~~~~~~~  155 (283)
T d2fnaa2          76 FLLELQKEINKLVKRLPSLLKALKNIQGIVIMGNEIKFNWNRKDRLSFANLLESFEQASKDNVIIVLDEAQELVKLRGVN  155 (283)
T ss_dssp             HHHHHHHHHHHHHHHCTTHHHHTTTSTTEEECSSSEEEC-----CCCHHHHHHHHHHTCSSCEEEEEETGGGGGGCTTCC
T ss_pred             HHHHHHHHhhhhhhhhHHHHHHHHhhhcccccccccccccchhhhhHHHHHHHHHHhhcccccccccchhhhhcccchHH
Confidence            22232222111000                         0000111122223222  3467899999987532       


Q ss_pred             --HHHHHhhcCCCCCCCCcEEEEEeCCchhhhcc------------CCcceEEecCCChHHHHHHHhhhhcC
Q 039455          144 --EQLQALAGNHDWFGFGSRIIITTRDEHVLKGH------------GVTNIYKVRGLDYVEALQLFHLKVSK  201 (216)
Q Consensus       144 --~~~~~l~~~~~~~~~~~~il~tsr~~~~~~~~------------~~~~~~~l~~l~~~~~~~ll~~~~~~  201 (216)
                        ..+..+...    ......+++.+........            .....+.+.|++.+++.+++.+....
T Consensus       156 ~~~~l~~~~~~----~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~L~~l~~~e~~~~l~~~~~~  223 (283)
T d2fnaa2         156 LLPALAYAYDN----LKRIKFIMSGSEMGLLYDYLRVEDPESPLFGRAFSTVELKPFSREEAIEFLRRGFQE  223 (283)
T ss_dssp             CHHHHHHHHHH----CTTEEEEEEESSHHHHHHHTTTTCTTSTTTTCCCEEEEECCCCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHh----hhhhhhhhccccchHHHHHHHhhhhcchhcccceeEEeeCCCCHHHHHHHHHhhhhh
Confidence              122222211    2345556665544321111            12467899999999999999876533

>d1fnna2 c.37.1.20 (A:1-276) CDC6, N-domain {Archaeon Pyrobaculum aerophilum [TaxId: 13773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: CDC6, N-domain
species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]

Probab=99.47  E-value=9e-13  Score=100.04  Aligned_cols=173  Identities=14%  Similarity=0.129  Sum_probs=100.8

Q ss_pred             CcccccccchhHHHHHHHHHhc----CCCCeeEEEEEecCCCcHHHHHHHHHHHhcCCCCce-EeeccccccccccCchH
Q 039455           23 SAVDGLVGIASRMEKMNGYLEA----GLDDVRFIGICGMGGIGKTTLAKVLYNTLKDQFEAS-SFLANVREVSVTRGLVP   97 (216)
Q Consensus        23 ~~~~~~vgR~~~~~~l~~~l~~----~~~~~~~i~I~G~~GiGKTtL~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~   97 (216)
                      ..|+.++||+.+++.+.++|..    .+...+.++|+||+|+|||++++.++..+....... .++. ...   ......
T Consensus        13 y~p~~l~~Re~ei~~l~~~l~~~l~~~~~~~~~lll~GppGtGKT~l~~~l~~~l~~~~~~~~~~~~-~~~---~~~~~~   88 (276)
T d1fnna2          13 YVPKRLPHREQQLQQLDILLGNWLRNPGHHYPRATLLGRPGTGKTVTLRKLWELYKDKTTARFVYIN-GFI---YRNFTA   88 (276)
T ss_dssp             CCCSCCTTCHHHHHHHHHHHHHHHHSTTSSCCEEEEECCTTSSHHHHHHHHHHHHTTSCCCEEEEEE-TTT---CCSHHH
T ss_pred             CCCCCCCCHHHHHHHHHHHHHHHHhCCCCCCCceEEECCCCCCHHHHHHHHHHHHhcccCCcEEEec-chh---hhhhhh
Confidence            4567799999999999888763    334567999999999999999999999886554433 3332 111   223333


Q ss_pred             HHHHHHHHHHhhccccccchhhhHHHHHHHhC--CceEEEEEeCCCCHH-----HHHHhhcCCCC-CCCCcEEEEEeCCc
Q 039455           98 LQEQLLSEVLMERNLIIWDVHKGINLIRWRLC--RKRVLVVLDDVDQLE-----QLQALAGNHDW-FGFGSRIIITTRDE  169 (216)
Q Consensus        98 ~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~--~~~~llvlDd~~~~~-----~~~~l~~~~~~-~~~~~~il~tsr~~  169 (216)
                      ..........................+.....  .....+++|+++...     ....+...... ......++.++...
T Consensus        89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~  168 (276)
T d1fnna2          89 IIGEIARSLNIPFPRRGLSRDEFLALLVEHLRERDLYMFLVLDDAFNLAPDILSTFIRLGQEADKLGAFRIALVIVGHND  168 (276)
T ss_dssp             HHHHHHHHTTCCCCSSCCCHHHHHHHHHHHHHHTTCCEEEEEETGGGSCHHHHHHHHHHTTCHHHHSSCCEEEEEEESST
T ss_pred             hhhhhHHhhhhhhhhhccchhHHHHHHHHHHhhcccccccchhHHHHhhhhhhhhHHHHHhccccccccceEEeecCCch
Confidence            33344433222222222233333444444333  346677788775431     12222221111 12334566666665


Q ss_pred             hhhhccC-------CcceEEecCCChHHHHHHHhhhh
Q 039455          170 HVLKGHG-------VTNIYKVRGLDYVEALQLFHLKV  199 (216)
Q Consensus       170 ~~~~~~~-------~~~~~~l~~l~~~~~~~ll~~~~  199 (216)
                      .....+.       ....+.+.+++.++..+++.+..
T Consensus       169 ~~~~~~~~~~~~r~~~~~i~~~~~~~~e~~~il~~r~  205 (276)
T d1fnna2         169 AVLNNLDPSTRGIMGKYVIRFSPYTKDQIFDILLDRA  205 (276)
T ss_dssp             HHHHTSCHHHHHHHTTCEEECCCCBHHHHHHHHHHHH
T ss_pred             hhhhhcchhhhhhhcchhccccchhHHHHHHHHHHHH
Confidence            4433321       23568999999999999987654

>d1r6bx2 c.37.1.20 (X:169-436) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpA, an Hsp100 chaperone, AAA+ modules
species: Escherichia coli [TaxId: 562]

Probab=99.45  E-value=1.8e-12  Score=98.06  Aligned_cols=152  Identities=14%  Similarity=0.104  Sum_probs=98.4

Q ss_pred             cccccchhHHHHHHHHHhcCCCCeeEEEEEecCCCcHHHHHHHHHHHhcCC------CCceEeeccccccccccCchHHH
Q 039455           26 DGLVGIASRMEKMNGYLEAGLDDVRFIGICGMGGIGKTTLAKVLYNTLKDQ------FEASSFLANVREVSVTRGLVPLQ   99 (216)
Q Consensus        26 ~~~vgR~~~~~~l~~~l~~~~~~~~~i~I~G~~GiGKTtL~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~   99 (216)
                      ++.+||+++++++...|....  ...++++|++|+|||+++..+++++...      ....+|......+-....     
T Consensus        18 d~~igRd~Ei~~l~~iL~r~~--k~n~lLVG~~GvGKTalv~~la~ri~~~~vp~~l~~~~i~~l~~~~liag~~-----   90 (268)
T d1r6bx2          18 DPLIGREKELERAIQVLCRRR--KNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSLDIGSLLAGTK-----   90 (268)
T ss_dssp             CCCCSCHHHHHHHHHHHTSSS--SCEEEEECCTTSSHHHHHHHHHHHHHHTCSCGGGTTCEEEECCCC---CCCC-----
T ss_pred             CcccChHHHHHHHHHHHhcCc--cCCcEEECCCCCcHHHHHHHHHHHHHhCCcccccccceeEEeeechHhccCc-----
Confidence            458999999999999997542  3577899999999999999999876532      122344432222110000     


Q ss_pred             HHHHHHHHhhccccccchhhhHHHHHHHh-CCceEEEEEeCCCCH----------HHHHHhhcCCCCCCCCcEEEEEeCC
Q 039455          100 EQLLSEVLMERNLIIWDVHKGINLIRWRL-CRKRVLVVLDDVDQL----------EQLQALAGNHDWFGFGSRIIITTRD  168 (216)
Q Consensus       100 ~~l~~~~~~~~~~~~~~~~~~~~~l~~~l-~~~~~llvlDd~~~~----------~~~~~l~~~~~~~~~~~~il~tsr~  168 (216)
                                   ...+++.....+...+ ..+..++++||+..+          .+...++..+.. ....++|.+|..
T Consensus        91 -------------~~g~~e~r~~~i~~~~~~~~~iIlfiDeih~l~~~g~~~g~~~d~a~~Lkp~L~-rg~i~vIgatT~  156 (268)
T d1r6bx2          91 -------------YRGDFEKRFKALLKQLEQDTNSILFIDEIHTIIGAGAASGGQVDAANLIKPLLS-SGKIRVIGSTTY  156 (268)
T ss_dssp             -------------CSSCHHHHHHHHHHHHSSSSCEEEEETTTTTTTTSCCSSSCHHHHHHHHSSCSS-SCCCEEEEEECH
T ss_pred             -------------cchhHHHHHHHHHHHhhccCCceEEecchHHHhcCCCCCCccccHHHHhhHHHh-CCCCeEEEeCCH
Confidence                         1122333333333333 346789999998543          245555544331 345788888887


Q ss_pred             chhhhcc-------CCcceEEecCCChHHHHHHHhhh
Q 039455          169 EHVLKGH-------GVTNIYKVRGLDYVEALQLFHLK  198 (216)
Q Consensus       169 ~~~~~~~-------~~~~~~~l~~l~~~~~~~ll~~~  198 (216)
                      .++....       ..++.+.+++++.+++.+++...
T Consensus       157 eey~~~~e~d~al~rrF~~I~V~Eps~e~t~~IL~~~  193 (268)
T d1r6bx2         157 QEFSNIFEKDRALARRFQKIDITEPSIEETVQIINGL  193 (268)
T ss_dssp             HHHHCCCCCTTSSGGGEEEEECCCCCHHHHHHHHHHH
T ss_pred             HHHHHHHhhcHHHHhhhcccccCCCCHHHHHHHHHHh
Confidence            7664443       25689999999999999999753

>d1jbka_ c.37.1.20 (A:) ClpB, AAA+ modules {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpB, AAA+ modules
species: Escherichia coli [TaxId: 562]

Probab=99.39  E-value=9.8e-13  Score=94.48  Aligned_cols=149  Identities=10%  Similarity=0.074  Sum_probs=91.5

Q ss_pred             cccccchhHHHHHHHHHhcCCCCeeEEEEEecCCCcHHHHHHHHHHHhcCC-C-----CceEeeccccccccccCchHHH
Q 039455           26 DGLVGIASRMEKMNGYLEAGLDDVRFIGICGMGGIGKTTLAKVLYNTLKDQ-F-----EASSFLANVREVSVTRGLVPLQ   99 (216)
Q Consensus        26 ~~~vgR~~~~~~l~~~l~~~~~~~~~i~I~G~~GiGKTtL~~~~~~~~~~~-~-----~~~~~~~~~~~~~~~~~~~~~~   99 (216)
                      ++.+||+++++++...|....  ...++++|++|+|||+++..+++++... .     ...+|..+.+.           
T Consensus        22 d~~igRd~Ei~~l~~iL~r~~--k~n~lLvG~pGVGKTalv~~LA~ri~~~~vp~~L~~~~i~~ld~~~-----------   88 (195)
T d1jbka_          22 DPVIGRDEEIRRTIQVLQRRT--KNNPVLIGEPGVGKTAIVEGLAQRIINGEVPEGLKGRRVLALDMGA-----------   88 (195)
T ss_dssp             CCCCSCHHHHHHHHHHHTSSS--SCEEEEECCTTSCHHHHHHHHHHHHHHTCSCGGGTTCEEEEECHHH-----------
T ss_pred             CCCcCcHHHHHHHHHHHhccC--CCCeEEEecCCcccHHHHHHHHHHHHhCCCCHHHcCceEEEeeHHH-----------
Confidence            458999999999999998643  2567899999999999999999976532 1     12333322221           


Q ss_pred             HHHHHHHHhhccccccchhhhHHHH-HHHhC-CceEEEEEeCCCCH----------HHHHHhhcCCCCCCCCcEEEEEeC
Q 039455          100 EQLLSEVLMERNLIIWDVHKGINLI-RWRLC-RKRVLVVLDDVDQL----------EQLQALAGNHDWFGFGSRIIITTR  167 (216)
Q Consensus       100 ~~l~~~~~~~~~~~~~~~~~~~~~l-~~~l~-~~~~llvlDd~~~~----------~~~~~l~~~~~~~~~~~~il~tsr  167 (216)
                        ++.    ... ..-+++.....+ ..... .+..+|++||+..+          +..+-+.+.+.  ....++|.+|.
T Consensus        89 --LiA----g~~-~rG~~E~rl~~il~e~~~~~~~iILfIDeih~l~~~g~~~g~~d~~~~Lkp~L~--rg~l~~IgatT  159 (195)
T d1jbka_          89 --LVA----GAK-YRGEFEERLKGVLNDLAKQEGNVILFIDELHTMVGAGKADGAMDAGNMLKPALA--RGELHCVGATT  159 (195)
T ss_dssp             --HHT----TTC-SHHHHHHHHHHHHHHHHHSTTTEEEEEETGGGGTT------CCCCHHHHHHHHH--TTSCCEEEEEC
T ss_pred             --Hhc----cCC-ccHHHHHHHHHHHHHHhcCCCcEEEEcchHHHHhcCCCCCCcccHHHHHHHHHh--CCCceEEecCC
Confidence              111    000 001122222222 22222 34789999998543          11122222222  24467888888


Q ss_pred             Cchhhhcc-------CCcceEEecCCChHHHHHHHh
Q 039455          168 DEHVLKGH-------GVTNIYKVRGLDYVEALQLFH  196 (216)
Q Consensus       168 ~~~~~~~~-------~~~~~~~l~~l~~~~~~~ll~  196 (216)
                      ..++...+       ..++.+.++..+.+++..+++
T Consensus       160 ~eey~~~~e~d~aL~rrF~~I~V~Ep~~e~t~~IL~  195 (195)
T d1jbka_         160 LDEYRQYIEKDAALERRFQKVFVAEPSVEDTIAILR  195 (195)
T ss_dssp             HHHHHHHTTTCHHHHTTEEEEECCCCCHHHHHTTCC
T ss_pred             HHHHHHHHHcCHHHHhcCCEeecCCCCHHHHHHHhC
Confidence            77665443       357899999999999987763

>d1sxjc2 c.37.1.20 (C:12-238) Replication factor C3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.38  E-value=2.9e-12  Score=95.07  Aligned_cols=172  Identities=15%  Similarity=0.214  Sum_probs=101.8

Q ss_pred             CCcccccccchhHHHHHHHHHhcCCCCeeEEEEEecCCCcHHHHHHHHHHHhcCCCC-ceEeeccccccccccCchHHHH
Q 039455           22 PSAVDGLVGIASRMEKMNGYLEAGLDDVRFIGICGMGGIGKTTLAKVLYNTLKDQFE-ASSFLANVREVSVTRGLVPLQE  100 (216)
Q Consensus        22 ~~~~~~~vgR~~~~~~l~~~l~~~~~~~~~i~I~G~~GiGKTtL~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~  100 (216)
                      |....+++|.++..+.|..|+..+  ..+.+.++||+|+||||+++.+++.+..... ......+...   .... ....
T Consensus        10 P~~~~divg~~~~~~~L~~~i~~~--~~~~lLl~Gp~G~GKttl~~~la~~l~~~~~~~~~~e~~~~~---~~~~-~~~~   83 (227)
T d1sxjc2          10 PETLDEVYGQNEVITTVRKFVDEG--KLPHLLFYGPPGTGKTSTIVALAREIYGKNYSNMVLELNASD---DRGI-DVVR   83 (227)
T ss_dssp             CSSGGGCCSCHHHHHHHHHHHHTT--CCCCEEEECSSSSSHHHHHHHHHHHHHTTSHHHHEEEECTTS---CCSH-HHHH
T ss_pred             CCCHHHccCcHHHHHHHHHHHHcC--CCCeEEEECCCCCChhHHHHHHHHHhhcCCCcceeEEecccc---cCCe-eeee
Confidence            455678999999999999999864  2345889999999999999999987643321 1111111111   1111 1111


Q ss_pred             HHHHHHHhhccccccchhhhHHHHHHHhCCceEEEEEeCCCCH--HHHHHhhcCCCCCCCCcEEEEEeCCchh-hhc-cC
Q 039455          101 QLLSEVLMERNLIIWDVHKGINLIRWRLCRKRVLVVLDDVDQL--EQLQALAGNHDWFGFGSRIIITTRDEHV-LKG-HG  176 (216)
Q Consensus       101 ~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~llvlDd~~~~--~~~~~l~~~~~~~~~~~~il~tsr~~~~-~~~-~~  176 (216)
                      ........               ......++..++|+|+++..  .....++..+......+.++++|....- ... ..
T Consensus        84 ~~~~~~~~---------------~~~~~~~~~kiiiiDe~d~~~~~~~~~Ll~~le~~~~~~~~~~~~~~~~~i~~~i~s  148 (227)
T d1sxjc2          84 NQIKDFAS---------------TRQIFSKGFKLIILDEADAMTNAAQNALRRVIERYTKNTRFCVLANYAHKLTPALLS  148 (227)
T ss_dssp             THHHHHHH---------------BCCSSSCSCEEEEETTGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHHT
T ss_pred             cchhhccc---------------cccccCCCeEEEEEeccccchhhHHHHHHHHhhhcccceeeccccCcHHHhHHHHHH
Confidence            11111000               01112234568999999754  3333343333322456677777775432 221 23


Q ss_pred             CcceEEecCCChHHHHHHHhhhhcCCC--CCchhHhhhcc
Q 039455          177 VTNIYKVRGLDYVEALQLFHLKVSKGK--QPTDDRVELSK  214 (216)
Q Consensus       177 ~~~~~~l~~l~~~~~~~ll~~~~~~~~--~~~~~~~~l~~  214 (216)
                      ....+++++++.++...++.+.+...+  .+++.++.|++
T Consensus       149 r~~~i~~~~~~~~~i~~~l~~I~~~e~i~i~~~~l~~i~~  188 (227)
T d1sxjc2         149 QCTRFRFQPLPQEAIERRIANVLVHEKLKLSPNAEKALIE  188 (227)
T ss_dssp             TSEEEECCCCCHHHHHHHHHHHHHTTTCCBCHHHHHHHHH
T ss_pred             HHhhhccccccccccccccccccccccccCCHHHHHHHHH
Confidence            457899999999999999998765554  44556666653

>d1l8qa2 c.37.1.20 (A:77-289) Chromosomal replication initiation factor DnaA {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Chromosomal replication initiation factor DnaA
species: Aquifex aeolicus [TaxId: 63363]

Probab=99.37  E-value=1.4e-12  Score=95.94  Aligned_cols=165  Identities=19%  Similarity=0.146  Sum_probs=97.2

Q ss_pred             ccccccchhHHH--HHHHHHhcCCCCeeEEEEEecCCCcHHHHHHHHHHHhcCCCCceEeeccccccccccCchHHHHHH
Q 039455           25 VDGLVGIASRME--KMNGYLEAGLDDVRFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLANVREVSVTRGLVPLQEQL  102 (216)
Q Consensus        25 ~~~~vgR~~~~~--~l~~~l~~~~~~~~~i~I~G~~GiGKTtL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  102 (216)
                      ..+++|...++.  .+.++....+.....+.|+|++|+|||+|++++++........+.++.. .         .....+
T Consensus        10 dnF~vg~~N~~a~~~~~~~~~~~~~~~n~l~l~G~~G~GKTHLl~A~~~~~~~~~~~~~~~~~-~---------~~~~~~   79 (213)
T d1l8qa2          10 ENFIVGEGNRLAYEVVKEALENLGSLYNPIFIYGSVGTGKTHLLQAAGNEAKKRGYRVIYSSA-D---------DFAQAM   79 (213)
T ss_dssp             SSCCCCTTTHHHHHHHHHHHHTTTTSCSSEEEECSSSSSHHHHHHHHHHHHHHTTCCEEEEEH-H---------HHHHHH
T ss_pred             hhccCCCcHHHHHHHHHHHHhCcCCCCCcEEEECCCCCcHHHHHHHHHHHhccCccceEEech-H---------HHHHHH
Confidence            455678755543  3555665443333458999999999999999999988776666666641 1         122222


Q ss_pred             HHHHHhhccccccchhhhHHHHHHHhCCceEEEEEeCCCCH---HHHH----HhhcCCCCCCCCcEEEEEeCCc------
Q 039455          103 LSEVLMERNLIIWDVHKGINLIRWRLCRKRVLVVLDDVDQL---EQLQ----ALAGNHDWFGFGSRIIITTRDE------  169 (216)
Q Consensus       103 ~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~llvlDd~~~~---~~~~----~l~~~~~~~~~~~~il~tsr~~------  169 (216)
                      ...+....          ...+...+. ..-+|+|||++..   ..++    .+.....  ..+..+|+||+..      
T Consensus        80 ~~~~~~~~----------~~~~~~~~~-~~dll~iDDi~~i~~~~~~~~~lf~lin~~~--~~~~~iiits~~~p~~l~~  146 (213)
T d1l8qa2          80 VEHLKKGT----------INEFRNMYK-SVDLLLLDDVQFLSGKERTQIEFFHIFNTLY--LLEKQIILASDRHPQKLDG  146 (213)
T ss_dssp             HHHHHHTC----------HHHHHHHHH-TCSEEEEECGGGGTTCHHHHHHHHHHHHHHH--HTTCEEEEEESSCGGGCTT
T ss_pred             HHHHHccc----------hhhHHHHHh-hccchhhhhhhhhcCchHHHHHHHHHHHHHh--hccceEEEecCCcchhccc
Confidence            22221110          111111111 2339999999744   2332    2222221  3678899999854      


Q ss_pred             ---hhhhccCCcceEEecCCChHHHHHHHhhhhcCCC--CCchhHhhhc
Q 039455          170 ---HVLKGHGVTNIYKVRGLDYVEALQLFHLKVSKGK--QPTDDRVELS  213 (216)
Q Consensus       170 ---~~~~~~~~~~~~~l~~l~~~~~~~ll~~~~~~~~--~~~~~~~~l~  213 (216)
                         ++.+++.....+.++ +++++..+++++++-..+  .+++.++.|+
T Consensus       147 ~~~dL~SRL~~g~~~~i~-p~d~~~~~iL~~~a~~rgl~l~~~v~~yl~  194 (213)
T d1l8qa2         147 VSDRLVSRFEGGILVEIE-LDNKTRFKIIKEKLKEFNLELRKEVIDYLL  194 (213)
T ss_dssp             SCHHHHHHHHTSEEEECC-CCHHHHHHHHHHHHHHTTCCCCHHHHHHHH
T ss_pred             cchHHHHHhhCceEEEEC-CCcHHHHHHHHHHHHHcCCCCCHHHHHHHH
Confidence               234444567888896 488888999988774433  4455555544

>d1sxjb2 c.37.1.20 (B:7-230) Replication factor C4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.32  E-value=4.2e-12  Score=94.11  Aligned_cols=173  Identities=18%  Similarity=0.266  Sum_probs=100.0

Q ss_pred             CCcccccccchhHHHHHHHHHhcCCCCeeEEEEEecCCCcHHHHHHHHHHHhcCCCC-ceEeeccccccccccCchHHHH
Q 039455           22 PSAVDGLVGIASRMEKMNGYLEAGLDDVRFIGICGMGGIGKTTLAKVLYNTLKDQFE-ASSFLANVREVSVTRGLVPLQE  100 (216)
Q Consensus        22 ~~~~~~~vgR~~~~~~l~~~l~~~~~~~~~i~I~G~~GiGKTtL~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~  100 (216)
                      |..-.+++|.++.++.|..++...  +.+.+.++||+|+||||+|+.+++.+...+. ...+..+...   ..+......
T Consensus        11 P~~~~d~ig~~~~~~~L~~~~~~~--~~~~~ll~Gp~G~GKTt~a~~la~~l~~~~~~~~~~~~n~~~---~~~~~~i~~   85 (224)
T d1sxjb2          11 PQVLSDIVGNKETIDRLQQIAKDG--NMPHMIISGMPGIGKTTSVHCLAHELLGRSYADGVLELNASD---DRGIDVVRN   85 (224)
T ss_dssp             CSSGGGCCSCTHHHHHHHHHHHSC--CCCCEEEECSTTSSHHHHHHHHHHHHHGGGHHHHEEEECTTS---CCSHHHHHT
T ss_pred             CCCHHHhcCCHHHHHHHHHHHHcC--CCCeEEEECCCCCCchhhHHHHHHHHhccccccccccccccc---cCCceehhh
Confidence            445677999999999999999864  3356889999999999999999987653321 1112111211   122211111


Q ss_pred             HHHHHHHhhccccccchhhhHHHHHHHhCCceEEEEEeCCCCH--HHHHHhhcCCCCCCCCcEEEEEeCCch-hhhc-cC
Q 039455          101 QLLSEVLMERNLIIWDVHKGINLIRWRLCRKRVLVVLDDVDQL--EQLQALAGNHDWFGFGSRIIITTRDEH-VLKG-HG  176 (216)
Q Consensus       101 ~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~llvlDd~~~~--~~~~~l~~~~~~~~~~~~il~tsr~~~-~~~~-~~  176 (216)
                      .+........               .....+..++|+|+++..  .....++..+......+.+++++.... +... ..
T Consensus        86 ~~~~~~~~~~---------------~~~~~~~kviiiDe~d~~~~~~~~~ll~~~e~~~~~~~~i~~~~~~~~i~~~l~s  150 (224)
T d1sxjb2          86 QIKHFAQKKL---------------HLPPGKHKIVILDEADSMTAGAQQALRRTMELYSNSTRFAFACNQSNKIIEPLQS  150 (224)
T ss_dssp             HHHHHHHBCC---------------CCCTTCCEEEEEESGGGSCHHHHHTTHHHHHHTTTTEEEEEEESCGGGSCHHHHT
T ss_pred             HHHHHHHhhc---------------cCCCcceEEEEEecccccchhHHHHHhhhccccccceeeeeccCchhhhhhHHHH
Confidence            1111100000               011234568999999754  222223222222234566777776543 2222 13


Q ss_pred             CcceEEecCCChHHHHHHHhhhhcCCC--CCchhHhhhcc
Q 039455          177 VTNIYKVRGLDYVEALQLFHLKVSKGK--QPTDDRVELSK  214 (216)
Q Consensus       177 ~~~~~~l~~l~~~~~~~ll~~~~~~~~--~~~~~~~~l~~  214 (216)
                      ....+++++++.++...++.+.+...+  .+++.++.|++
T Consensus       151 r~~~i~~~~~~~~~i~~~l~~i~~~e~~~i~~~~l~~I~~  190 (224)
T d1sxjb2         151 QCAILRYSKLSDEDVLKRLLQIIKLEDVKYTNDGLEAIIF  190 (224)
T ss_dssp             TSEEEECCCCCHHHHHHHHHHHHHHHTCCBCHHHHHHHHH
T ss_pred             HHHHhhhcccchhhhHHHHHHHHHhcccCCCHHHHHHHHH
Confidence            447899999999999999987664333  34455555543

>d1ixza_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: AAA domain of cell division protein FtsH
species: Thermus thermophilus [TaxId: 274]

Probab=99.31  E-value=4.5e-11  Score=89.63  Aligned_cols=167  Identities=14%  Similarity=0.166  Sum_probs=95.3

Q ss_pred             cccccccchhHHHHHHHHHh---c-------CCCCeeEEEEEecCCCcHHHHHHHHHHHhcCCCCceEeecccccccccc
Q 039455           24 AVDGLVGIASRMEKMNGYLE---A-------GLDDVRFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLANVREVSVTR   93 (216)
Q Consensus        24 ~~~~~vgR~~~~~~l~~~l~---~-------~~~~~~~i~I~G~~GiGKTtL~~~~~~~~~~~~~~~~~~~~~~~~~~~~   93 (216)
                      .-++++|-++..+.|.+.+.   .       +....+.+.++||+|+|||+||+.+++...-.  . +.+. ..      
T Consensus         7 ~~~di~G~~~~k~~l~~~i~~l~~~~~~~~~g~~~~~giLl~GppGtGKT~la~aia~~~~~~--~-~~i~-~~------   76 (247)
T d1ixza_           7 TFKDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEARVP--F-ITAS-GS------   76 (247)
T ss_dssp             CGGGCCSCHHHHHHHHHHHHHHHCHHHHHHTTCCCCSEEEEECCTTSSHHHHHHHHHHHTTCC--E-EEEE-HH------
T ss_pred             cHHHHccHHHHHHHHHHHHHHHHCHHHHHHcCCCCCceEEEecCCCCChhHHHHHHHHHcCCC--E-EEEE-hH------
Confidence            45678999998887766432   1       12234679999999999999999999876422  1 1121 11      


Q ss_pred             CchHHHHHHHHHHHhhccccccchhhhHHHHHHHhCCceEEEEEeCCCCHH----------------HHHHhh---cCCC
Q 039455           94 GLVPLQEQLLSEVLMERNLIIWDVHKGINLIRWRLCRKRVLVVLDDVDQLE----------------QLQALA---GNHD  154 (216)
Q Consensus        94 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~llvlDd~~~~~----------------~~~~l~---~~~~  154 (216)
                             .+...      +...+...+...+..+-...|++|+|||++.+-                .+..++   ..+.
T Consensus        77 -------~l~~~------~~g~~~~~l~~~f~~a~~~~p~Ii~iDeid~l~~~r~~~~~~~~~~~~~~~~~ll~~~d~~~  143 (247)
T d1ixza_          77 -------DFVEM------FVGVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFE  143 (247)
T ss_dssp             -------HHHHS------CTTHHHHHHHHHHHHHTTSSSEEEEEETHHHHHC---------CHHHHHHHHHHHHHHHTCC
T ss_pred             -------Hhhhc------cccHHHHHHHHHHHHHHHcCCEEEEEEChhhhCccCCCCCCCCcHHHHHHHHHHHHHhhCCC
Confidence                   11110      000111122233333445678999999985320                122232   2222


Q ss_pred             CCCCCcEEEEEeCCchhhhc-c----CCcceEEecCCChHHHHHHHhhhhcCCC-CCchhHhhhcc
Q 039455          155 WFGFGSRIIITTRDEHVLKG-H----GVTNIYKVRGLDYVEALQLFHLKVSKGK-QPTDDRVELSK  214 (216)
Q Consensus       155 ~~~~~~~il~tsr~~~~~~~-~----~~~~~~~l~~l~~~~~~~ll~~~~~~~~-~~~~~~~~l~~  214 (216)
                       ...+.-+|.||..++.+.. +    ..++.+++++.+.++..++|+.+..... ..+.++..|++
T Consensus       144 -~~~~vivi~tTn~~~~ld~al~R~~Rf~~~i~~~~P~~~eR~~il~~~l~~~~~~~~~~~~~la~  208 (247)
T d1ixza_         144 -KDTAIVVMAATNRPDILDPALLRPGRFDRQIAIDAPDVKGREQILRIHARGKPLAEDVDLALLAK  208 (247)
T ss_dssp             -TTCCEEEEEEESCGGGSCGGGGSTTSSCEEEECCSCCHHHHHHHHHHHHTTSCBCTTCCHHHHHH
T ss_pred             -CCCCEEEEEeCCCccccCHhHcCCCCCcEEEEECCcCHHHHHHHHHHHhcccCCccccCHHHHHH
Confidence             1223344557766543221 1    2457899999999999999998775443 33334555554

>d1sxje2 c.37.1.20 (E:4-255) Replication factor C5 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C5
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.30  E-value=2.3e-12  Score=97.03  Aligned_cols=185  Identities=13%  Similarity=0.159  Sum_probs=93.7

Q ss_pred             CCcccccccchhHHHHHHHHHhcCCCCeeEEEEEecCCCcHHHHHHHHHHHhcCCCC------ceEeeccccc-------
Q 039455           22 PSAVDGLVGIASRMEKMNGYLEAGLDDVRFIGICGMGGIGKTTLAKVLYNTLKDQFE------ASSFLANVRE-------   88 (216)
Q Consensus        22 ~~~~~~~vgR~~~~~~l~~~l~~~~~~~~~i~I~G~~GiGKTtL~~~~~~~~~~~~~------~~~~~~~~~~-------   88 (216)
                      |..-++++|+++..+.|..++... ...+.++|+||+|+||||+++.+++.+.....      ...+......       
T Consensus         7 P~~~~diig~~~~~~~L~~~~~~~-~~~~~lll~Gp~G~GKTt~~~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~   85 (252)
T d1sxje2           7 PKSLNALSHNEELTNFLKSLSDQP-RDLPHLLLYGPNGTGKKTRCMALLESIFGPGVYRLKIDVRQFVTASNRKLELNVV   85 (252)
T ss_dssp             CCSGGGCCSCHHHHHHHHTTTTCT-TCCCCEEEECSTTSSHHHHHHTHHHHHSCTTCCC------------------CCE
T ss_pred             CCCHHHccCcHHHHHHHHHHHHcC-CCCCeEEEECCCCCCHHHHHHHHHHhhcCccccccccccccccccccchhhhhhc
Confidence            556778999999999998887654 34456889999999999999999987522110      0000000000       


Q ss_pred             ----------cccccCchHHHHHHHHHHHhhccccccchhhhHHHHHHHhCCceEEEEEeCCCCH--HHHHHhhcCCCCC
Q 039455           89 ----------VSVTRGLVPLQEQLLSEVLMERNLIIWDVHKGINLIRWRLCRKRVLVVLDDVDQL--EQLQALAGNHDWF  156 (216)
Q Consensus        89 ----------~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~llvlDd~~~~--~~~~~l~~~~~~~  156 (216)
                                .......................       .....-......+..+++||+++..  +....+...+...
T Consensus        86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~iiiide~d~l~~~~~~~l~~~~e~~  158 (252)
T d1sxje2          86 SSPYHLEITPSDMGNNDRIVIQELLKEVAQMEQ-------VDFQDSKDGLAHRYKCVIINEANSLTKDAQAALRRTMEKY  158 (252)
T ss_dssp             ECSSEEEECCC----CCHHHHHHHHHHHTTTTC-------------------CCEEEEEECTTSSCHHHHHHHHHHHHHS
T ss_pred             cCCccceeeecccccCCcceeeehhhhhhhhhh-------hhhhhcccccCCCceEEEeccccccccccchhhhcccccc
Confidence                      00000000000111110000000       0000001111234458999999865  2233332222222


Q ss_pred             CCCcEEEEEeCCchh-hhc-cCCcceEEecCCChHHHHHHHhhhhcCCC---CCchhHhhhcc
Q 039455          157 GFGSRIIITTRDEHV-LKG-HGVTNIYKVRGLDYVEALQLFHLKVSKGK---QPTDDRVELSK  214 (216)
Q Consensus       157 ~~~~~il~tsr~~~~-~~~-~~~~~~~~l~~l~~~~~~~ll~~~~~~~~---~~~~~~~~l~~  214 (216)
                      ...+.+|+||.+.+- ... ......+.+++++.++..+++.+.+-..+   .+++.++.|++
T Consensus       159 ~~~~~~Il~tn~~~~i~~~l~sR~~~i~~~~~~~~~~~~~l~~i~~~e~~~~~~~~~l~~i~~  221 (252)
T d1sxje2         159 SKNIRLIMVCDSMSPIIAPIKSQCLLIRCPAPSDSEISTILSDVVTNERIQLETKDILKRIAQ  221 (252)
T ss_dssp             TTTEEEEEEESCSCSSCHHHHTTSEEEECCCCCHHHHHHHHHHHHHHHTCEECCSHHHHHHHH
T ss_pred             cccccceeeeccccchhhhhhcchheeeecccchhhHHHHHHHHHHHcCCCCCcHHHHHHHHH
Confidence            355777778776532 111 12236899999999999999976543222   23444555543

>d1sxjd2 c.37.1.20 (D:26-262) Replication factor C2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C2
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.30  E-value=5.1e-12  Score=94.19  Aligned_cols=181  Identities=13%  Similarity=0.169  Sum_probs=101.0

Q ss_pred             CCcccccccchhHHHHHHHHHhcCCCCeeEEEEEecCCCcHHHHHHHHHHHhcCCC---CceEeeccccccccccCchHH
Q 039455           22 PSAVDGLVGIASRMEKMNGYLEAGLDDVRFIGICGMGGIGKTTLAKVLYNTLKDQF---EASSFLANVREVSVTRGLVPL   98 (216)
Q Consensus        22 ~~~~~~~vgR~~~~~~l~~~l~~~~~~~~~i~I~G~~GiGKTtL~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~   98 (216)
                      |..-.+++|+++..+.|..++...  ..+.+.++||+|+||||+++.+++++....   .....+. ...   ...... 
T Consensus         8 P~~~~diig~~~~~~~l~~~i~~~--~~~~lll~Gp~G~GKTtl~~~i~~~l~~~~~~~~~~~~~~-~~~---~~~~~~-   80 (237)
T d1sxjd2           8 PKNLDEVTAQDHAVTVLKKTLKSA--NLPHMLFYGPPGTGKTSTILALTKELYGPDLMKSRILELN-ASD---ERGISI-   80 (237)
T ss_dssp             CSSTTTCCSCCTTHHHHHHHTTCT--TCCCEEEECSTTSSHHHHHHHHHHHHHHHHHHTTSEEEEC-SSS---CCCHHH-
T ss_pred             CCCHHHccCcHHHHHHHHHHHHcC--CCCeEEEECCCCCChHHHHHHHHHHHcCCcccccchhhee-ccc---cccchH-
Confidence            445667999999999999998754  345689999999999999999998753211   1111111 111   111111 


Q ss_pred             HHHHHHHHHhhccccccchhhhHHHHHHHhCCceEEEEEeCCCCH--HHHHHhhcCCCCCCCCcEEEEEeCCc-hhhhcc
Q 039455           99 QEQLLSEVLMERNLIIWDVHKGINLIRWRLCRKRVLVVLDDVDQL--EQLQALAGNHDWFGFGSRIIITTRDE-HVLKGH  175 (216)
Q Consensus        99 ~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~llvlDd~~~~--~~~~~l~~~~~~~~~~~~il~tsr~~-~~~~~~  175 (216)
                      ............   ..  ......+......+.-++|+|+++..  +....+..........+.+++++... .....+
T Consensus        81 ~~~~~~~~~~~~---~~--~~~~~~~~~~~~~~~~viiiDe~d~l~~~~~~~l~~~~~~~~~~~~~i~~~~~~~~~~~~l  155 (237)
T d1sxjd2          81 VREKVKNFARLT---VS--KPSKHDLENYPCPPYKIIILDEADSMTADAQSALRRTMETYSGVTRFCLICNYVTRIIDPL  155 (237)
T ss_dssp             HTTHHHHHHHSC---CC--CCCTTHHHHSCCCSCEEEEETTGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHH
T ss_pred             HHHHHHHHhhhh---hh--hhhHHHHhhccccCceEEEEecccccCHHHHHHHhhccccccccccccccccccccccccc
Confidence            111111111110   00  01111122233344558999999754  23333322222123455666666543 222221


Q ss_pred             -CCcceEEecCCChHHHHHHHhhhhcCCC--CCchhHhhhcc
Q 039455          176 -GVTNIYKVRGLDYVEALQLFHLKVSKGK--QPTDDRVELSK  214 (216)
Q Consensus       176 -~~~~~~~l~~l~~~~~~~ll~~~~~~~~--~~~~~~~~l~~  214 (216)
                       .....+++++++.++..+++.+.+...+  .+++.++.|++
T Consensus       156 ~sr~~~i~f~~~~~~~~~~~L~~i~~~e~i~i~~~~l~~ia~  197 (237)
T d1sxjd2         156 ASQCSKFRFKALDASNAIDRLRFISEQENVKCDDGVLERILD  197 (237)
T ss_dssp             HHHSEEEECCCCCHHHHHHHHHHHHHTTTCCCCHHHHHHHHH
T ss_pred             cchhhhhccccccccccchhhhhhhhhhcCcCCHHHHHHHHH
Confidence             1237899999999999999998776544  35556666654

>d1iqpa2 c.37.1.20 (A:2-232) Replication factor C {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=99.30  E-value=5.3e-12  Score=93.91  Aligned_cols=171  Identities=19%  Similarity=0.262  Sum_probs=99.3

Q ss_pred             CCcccccccchhHHHHHHHHHhcCCCCeeEEEEEecCCCcHHHHHHHHHHHhcCCC-Cc-eEeeccccccccccCchHHH
Q 039455           22 PSAVDGLVGIASRMEKMNGYLEAGLDDVRFIGICGMGGIGKTTLAKVLYNTLKDQF-EA-SSFLANVREVSVTRGLVPLQ   99 (216)
Q Consensus        22 ~~~~~~~vgR~~~~~~l~~~l~~~~~~~~~i~I~G~~GiGKTtL~~~~~~~~~~~~-~~-~~~~~~~~~~~~~~~~~~~~   99 (216)
                      |..-.+++|.++..+.|..++...  ..+.+.++||+|+||||+|+.++..+.... .. ...+. ...   ..+.....
T Consensus        20 P~~~~diig~~~~~~~l~~~i~~~--~~~~lll~Gp~G~GKTtla~~iak~l~~~~~~~~~~e~n-~s~---~~~~~~~~   93 (231)
T d1iqpa2          20 PQRLDDIVGQEHIVKRLKHYVKTG--SMPHLLFAGPPGVGKTTAALALARELFGENWRHNFLELN-ASD---ERGINVIR   93 (231)
T ss_dssp             CCSTTTCCSCHHHHHHHHHHHHHT--CCCEEEEESCTTSSHHHHHHHHHHHHHGGGHHHHEEEEE-TTC---HHHHHTTH
T ss_pred             CCCHHHccCcHHHHHHHHHHHHcC--CCCeEEEECCCCCcHHHHHHHHHHHHHhcccCCCeeEEe-cCc---ccchhHHH
Confidence            445678999999999999999864  346799999999999999999998764321 11 11111 111   00000000


Q ss_pred             HHHHHHHHhhccccccchhhhHHHHHHHhCCceEEEEEeCCCCH--HHHHHhhcCCCCCCCCcEEEEEeCCch-hhhcc-
Q 039455          100 EQLLSEVLMERNLIIWDVHKGINLIRWRLCRKRVLVVLDDVDQL--EQLQALAGNHDWFGFGSRIIITTRDEH-VLKGH-  175 (216)
Q Consensus       100 ~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~llvlDd~~~~--~~~~~l~~~~~~~~~~~~il~tsr~~~-~~~~~-  175 (216)
                       .......               ........+..++++||++..  +....+...+......+.+++++.... +...+ 
T Consensus        94 -~~~~~~~---------------~~~~~~~~~~~iilide~d~~~~~~~~~ll~~l~~~~~~~~~i~~~n~~~~i~~~l~  157 (231)
T d1iqpa2          94 -EKVKEFA---------------RTKPIGGASFKIIFLDEADALTQDAQQALRRTMEMFSSNVRFILSCNYSSKIIEPIQ  157 (231)
T ss_dssp             -HHHHHHH---------------HSCCGGGCSCEEEEEETGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHH
T ss_pred             -HHHHHHH---------------hhhhccCCCceEEeehhhhhcchhHHHHHhhhcccCCcceEEEeccCChhhchHhHh
Confidence             0000000               000011245679999999643  333333322221123455666665442 22221 


Q ss_pred             CCcceEEecCCChHHHHHHHhhhhcCCC--CCchhHhhhcc
Q 039455          176 GVTNIYKVRGLDYVEALQLFHLKVSKGK--QPTDDRVELSK  214 (216)
Q Consensus       176 ~~~~~~~l~~l~~~~~~~ll~~~~~~~~--~~~~~~~~l~~  214 (216)
                      .....+.+.+.+.++...++.+.+...+  .+++.++.|++
T Consensus       158 sR~~~i~~~~~~~~~~~~~l~~~~~~e~i~i~~~~l~~I~~  198 (231)
T d1iqpa2         158 SRCAIFRFRPLRDEDIAKRLRYIAENEGLELTEEGLQAILY  198 (231)
T ss_dssp             HTEEEEECCCCCHHHHHHHHHHHHHTTTCEECHHHHHHHHH
T ss_pred             CccccccccccchhhHHHHHHHHHHHhCCCCCHHHHHHHHH
Confidence            2347799999999999999998876655  34556666654

>d1lv7a_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: AAA domain of cell division protein FtsH
species: Escherichia coli [TaxId: 562]

Probab=99.29  E-value=2.2e-11  Score=91.79  Aligned_cols=169  Identities=16%  Similarity=0.155  Sum_probs=98.3

Q ss_pred             CcccccccchhHHHHHHHHHh---c-------CCCCeeEEEEEecCCCcHHHHHHHHHHHhcCCCCceEeeccccccccc
Q 039455           23 SAVDGLVGIASRMEKMNGYLE---A-------GLDDVRFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLANVREVSVT   92 (216)
Q Consensus        23 ~~~~~~vgR~~~~~~l~~~l~---~-------~~~~~~~i~I~G~~GiGKTtL~~~~~~~~~~~~~~~~~~~~~~~~~~~   92 (216)
                      ....+.+|-++..++|.+.+.   .       +....+.+.++||+|+|||++|+.+++.+...  . +.+. .+.+...
T Consensus         9 ~t~~Di~Gl~~~k~~l~e~v~~~~~~~~~~~~g~~~~~~iLL~GppGtGKT~la~~iA~~~~~~--~-~~i~-~~~l~~~   84 (256)
T d1lv7a_           9 TTFADVAGCDEAKEEVAELVEYLREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGEAKVP--F-FTIS-GSDFVEM   84 (256)
T ss_dssp             CCGGGSCSCHHHHHHTHHHHHHHHCGGGC-----CCCCEEEEECCTTSCHHHHHHHHHHHHTCC--E-EEEC-SCSSTTS
T ss_pred             CCHHHHhchHHHHHHHHHHHHHHHCHHHHHHcCCCCCCeEEeeCCCCCCccHHHHHHHHHcCCC--E-EEEE-hHHhhhc
Confidence            345789999999988876542   1       12235679999999999999999999877432  1 1121 1111000


Q ss_pred             cCchHHHHHHHHHHHhhccccccchhhhHHHHHHHhCCceEEEEEeCCCCH------------H----HHHHhhcCCC--
Q 039455           93 RGLVPLQEQLLSEVLMERNLIIWDVHKGINLIRWRLCRKRVLVVLDDVDQL------------E----QLQALAGNHD--  154 (216)
Q Consensus        93 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~llvlDd~~~~------------~----~~~~l~~~~~--  154 (216)
                                         +...+...+...+..+-...|++|+|||++..            +    .+..++..+.  
T Consensus        85 -------------------~~g~~~~~l~~~f~~A~~~~P~il~iDeiD~l~~~r~~~~~~~~~~~~~~~~~ll~~~d~~  145 (256)
T d1lv7a_          85 -------------------FVGVGASRVRDMFEQAKKAAPCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGF  145 (256)
T ss_dssp             -------------------CCCCCHHHHHHHHHHHHTTCSEEEEETTHHHHTCCCSTTSCCTTCHHHHHHHHHHHHHHTC
T ss_pred             -------------------chhHHHHHHHHHHHHHHHcCCEEEEEEChhhhCccCCCCCCCCcHHHHHHHHHHHHHhhCC
Confidence                               00111122333344445678899999998532            1    1222322211  


Q ss_pred             CCCCCcEEEEEeCCchhhh-cc----CCcceEEecCCChHHHHHHHhhhhcCCC-CCchhHhhhcc
Q 039455          155 WFGFGSRIIITTRDEHVLK-GH----GVTNIYKVRGLDYVEALQLFHLKVSKGK-QPTDDRVELSK  214 (216)
Q Consensus       155 ~~~~~~~il~tsr~~~~~~-~~----~~~~~~~l~~l~~~~~~~ll~~~~~~~~-~~~~~~~~l~~  214 (216)
                      ....+.-+|.||+.+.... .+    .-++.+.+++.+.++..++|+.+..... .++.++..|++
T Consensus       146 ~~~~~v~vIatTn~~~~ld~al~R~gRfd~~i~i~~P~~~~R~~il~~~l~~~~~~~~~~~~~la~  211 (256)
T d1lv7a_         146 EGNEGIIVIAATNRPDVLDPALLRPGRFDRQVVVGLPDVRGREQILKVHMRRVPLAPDIDAAIIAR  211 (256)
T ss_dssp             CSSSCEEEEEEESCTTTSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSCBCTTCCHHHHHH
T ss_pred             CCCCCEEEEEeCCCcccCCHhHcCCCCCCEEEECCCcCHHHHHHHHHHhccCCCcCcccCHHHHHH
Confidence            1123445566777654432 11    2458999999999999999988775544 23345555543

>d1e32a2 c.37.1.20 (A:201-458) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Membrane fusion ATPase VCP/p97
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.28  E-value=4.7e-11  Score=90.26  Aligned_cols=166  Identities=14%  Similarity=0.112  Sum_probs=96.3

Q ss_pred             cccccchhHHHHHHHHHhc-----------CCCCeeEEEEEecCCCcHHHHHHHHHHHhcCCCCceEeeccccccccccC
Q 039455           26 DGLVGIASRMEKMNGYLEA-----------GLDDVRFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLANVREVSVTRG   94 (216)
Q Consensus        26 ~~~vgR~~~~~~l~~~l~~-----------~~~~~~~i~I~G~~GiGKTtL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   94 (216)
                      ....|-++..++|.+.+..           +....+.+.++||+|+|||++++.+++.....   ...+. .....  ..
T Consensus         4 ~dv~G~~~~k~~l~~~i~~~l~~~~~~~~~g~~~~~giLL~GppGtGKT~l~~ala~~~~~~---~~~i~-~~~l~--~~   77 (258)
T d1e32a2           4 DDVGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAF---FFLIN-GPEIM--SK   77 (258)
T ss_dssp             GGCCSCSHHHHHHHHHHHHHHHCHHHHHHCCCCCCCEEEEECCTTSSHHHHHHHHHHHTTCE---EEEEC-HHHHT--TS
T ss_pred             hhhccHHHHHHHHHHHHHHHhcCHHHHHhCCCCCCceeEEecCCCCCchHHHHHHHHHhCCe---EEEEE-chhhc--cc
Confidence            4578999998888776431           22234679999999999999999999875432   11221 11110  00


Q ss_pred             chHHHHHHHHHHHhhccccccchhhhHHHHHHHhCCceEEEEEeCCCCHH-------------HHHHhhcCC--CCCCCC
Q 039455           95 LVPLQEQLLSEVLMERNLIIWDVHKGINLIRWRLCRKRVLVVLDDVDQLE-------------QLQALAGNH--DWFGFG  159 (216)
Q Consensus        95 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~llvlDd~~~~~-------------~~~~l~~~~--~~~~~~  159 (216)
                      ..                 ..........+...-..++++|+|||++..-             ....+....  .....+
T Consensus        78 ~~-----------------g~~~~~l~~~f~~A~~~~p~il~iDeid~l~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~  140 (258)
T d1e32a2          78 LA-----------------GESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAH  140 (258)
T ss_dssp             CT-----------------THHHHHHHHHHHHHHHTCSEEEEESSGGGTCCHHHHCCCTTHHHHHHHHHHHHHTCCCSSC
T ss_pred             cc-----------------ccHHHHHHHHHHHHHhcCCeEEEehhhhhhccCCCCCCCchHHHHHHHhccccccccccCC
Confidence            00                 0011112223333445678999999996430             111111111  111344


Q ss_pred             cEEEEEeCCchhhhc--c---CCcceEEecCCChHHHHHHHhhhhcCCC-CCchhHhhhcc
Q 039455          160 SRIIITTRDEHVLKG--H---GVTNIYKVRGLDYVEALQLFHLKVSKGK-QPTDDRVELSK  214 (216)
Q Consensus       160 ~~il~tsr~~~~~~~--~---~~~~~~~l~~l~~~~~~~ll~~~~~~~~-~~~~~~~~l~~  214 (216)
                      ..+|.||+.+.....  .   ..+..+++++.+.++..++|+.+..+.. .++.++..|++
T Consensus       141 vlvi~tTn~~~~ld~al~r~gRfd~~i~~~~P~~~~R~~il~~~l~~~~~~~~~~~~~la~  201 (258)
T d1e32a2         141 VIVMAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHTKNMKLADDVDLEQVAN  201 (258)
T ss_dssp             EEEEEEESCGGGSCGGGTSTTSSCEEEECCCCCHHHHHHHHHHTTTTSCBCTTCCHHHHHH
T ss_pred             ccEEEeCCCccccchhhhhcccccceeECCCCCHHHHHHHhhhhccCcccccccchhhhhh
Confidence            556778876643221  1   2568999999999999999988765443 23335566654

>d1w5sa2 c.37.1.20 (A:7-293) CDC6-like protein APE0152, N-terminal domain {Aeropyrum pernix [TaxId: 56636]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: CDC6-like protein APE0152, N-terminal domain
species: Aeropyrum pernix [TaxId: 56636]

Probab=99.25  E-value=6.5e-11  Score=90.02  Aligned_cols=186  Identities=16%  Similarity=0.113  Sum_probs=98.7

Q ss_pred             CcccccccchhHHHHHHHHHh----cC---CCCeeEEEEEecCCCcHHHHHHHHHHHhcCCC------CceEeecccccc
Q 039455           23 SAVDGLVGIASRMEKMNGYLE----AG---LDDVRFIGICGMGGIGKTTLAKVLYNTLKDQF------EASSFLANVREV   89 (216)
Q Consensus        23 ~~~~~~vgR~~~~~~l~~~l~----~~---~~~~~~i~I~G~~GiGKTtL~~~~~~~~~~~~------~~~~~~~~~~~~   89 (216)
                      ..|+.+.||+.+++.|.+++.    .+   ++-..++.|+||+|+|||++++.++..+.+..      ....++. ..  
T Consensus        13 ~~P~~~~~Re~e~~~l~~~l~~~~~~~~~~~~~~~~l~l~GppGtGKT~l~~~l~~~l~~~~~~~~~~~~~~~~~-~~--   89 (287)
T d1w5sa2          13 YIPPELRVRRGEAEALARIYLNRLLSGAGLSDVNMIYGSIGRVGIGKTTLAKFTVKRVSEAAAKEGLTVKQAYVN-AF--   89 (287)
T ss_dssp             CCCSSCSSSCHHHHHHHHHHHHHHHTSSCBCCEEEEEECTTCCSSSHHHHHHHHHHHHHHHHHHTTCCEEEEEEE-GG--
T ss_pred             cCCCCCCCHHHHHHHHHHHHHHHHHcCCCCCCcceEEEeECCCCCCHHHHHHHHHHHHHhhcccccCCceeeeec-cc--
Confidence            357789999999999988653    11   11123567789999999999999998764321      1223332 11  


Q ss_pred             ccccCchHHHHHHHHHHHhhccccccchhhhHHHHHHHhC--CceEEEEEeCCCCH--------HHHHHh------hcCC
Q 039455           90 SVTRGLVPLQEQLLSEVLMERNLIIWDVHKGINLIRWRLC--RKRVLVVLDDVDQL--------EQLQAL------AGNH  153 (216)
Q Consensus        90 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~--~~~~llvlDd~~~~--------~~~~~l------~~~~  153 (216)
                       .................................+.....  ....++++|+++..        +....+      +...
T Consensus        90 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~iide~d~l~~~~~~~~~~~~~l~~l~~~l~~~  168 (287)
T d1w5sa2          90 -NAPNLYTILSLIVRQTGYPIQVRGAPALDILKALVDNLYVENHYLLVILDEFQSMLSSPRIAAEDLYTLLRVHEEIPSR  168 (287)
T ss_dssp             -GCCSHHHHHHHHHHHHTCCCCCTTCCHHHHHHHHHHHHHHHTCEEEEEEESTHHHHSCTTSCHHHHHHHHTHHHHSCCT
T ss_pred             -cccchhhHHHHHhhhcccccccccchHHHHHHHHHHHHHhccCccccceeEEEEeccccccchhHHHHHHHHHHhcchh
Confidence             122333333333333322222222233333444444443  45678888877533        111111      1111


Q ss_pred             CCCCCCcEEEEEeCCchhhhc---------cCCcceEEecCCChHHHHHHHhhhh---cCCC-CCchhHhhhc
Q 039455          154 DWFGFGSRIIITTRDEHVLKG---------HGVTNIYKVRGLDYVEALQLFHLKV---SKGK-QPTDDRVELS  213 (216)
Q Consensus       154 ~~~~~~~~il~tsr~~~~~~~---------~~~~~~~~l~~l~~~~~~~ll~~~~---~~~~-~~~~~~~~l~  213 (216)
                      .. .....+++++........         ......+.+++++.++..+++...+   .... .+++.++.|+
T Consensus       169 ~~-~~~~~~i~i~~~~~~~~~~~~~~~~~~~r~~~~i~f~~y~~~el~~Il~~r~~~~~~~~~~~~~al~~ia  240 (287)
T d1w5sa2         169 DG-VNRIGFLLVASDVRALSYMREKIPQVESQIGFKLHLPAYKSRELYTILEQRAELGLRDTVWEPRHLELIS  240 (287)
T ss_dssp             TS-CCBEEEEEEEEETHHHHHHHHHCHHHHTTCSEEEECCCCCHHHHHHHHHHHHHHHBCTTSCCHHHHHHHH
T ss_pred             hc-ccceeEEeecccHHHHHHHHhhccchhcccceeeeccCCcHHHHHHHHhhhHHHhhccCCCCHHHHHHHH
Confidence            11 123344444433322111         1235789999999999999998765   2222 3344555554

>d1njfa_ c.37.1.20 (A:) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: delta prime subunit of DNA polymerase III, N-domain
species: Escherichia coli [TaxId: 562]

Probab=99.25  E-value=6e-11  Score=88.65  Aligned_cols=181  Identities=14%  Similarity=0.137  Sum_probs=99.4

Q ss_pred             CCcccccccchhHHHHHHHHHhcCCCCeeEEEEEecCCCcHHHHHHHHHHHhcCCCCceEeeccccccccccCchHHHHH
Q 039455           22 PSAVDGLVGIASRMEKMNGYLEAGLDDVRFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLANVREVSVTRGLVPLQEQ  101 (216)
Q Consensus        22 ~~~~~~~vgR~~~~~~l~~~l~~~~~~~~~i~I~G~~GiGKTtL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  101 (216)
                      |..-.+++|.++..+.|..++.... -...+.++||+|+|||++|+.++..+......  ...       ..........
T Consensus         8 P~~~~dlig~~~~~~~L~~~i~~~~-~~~~~Ll~Gp~G~GKtt~a~~~~~~l~~~~~~--~~~-------~~~~~~~~~~   77 (239)
T d1njfa_           8 PQTFADVVGQEHVLTALANGLSLGR-IHHAYLFSGTRGVGKTSIARLLAKGLNCETGI--TAT-------PCGVCDNCRE   77 (239)
T ss_dssp             CSSGGGSCSCHHHHHHHHHHHHTTC-CCSEEEEECSTTSSHHHHHHHHHHHHHCTTCS--CSS-------CCSCSHHHHH
T ss_pred             CCCHHHccChHHHHHHHHHHHHcCC-CCeeEEEECCCCCcHHHHHHHHHHHhcCcccc--ccC-------ccccchHHHH
Confidence            3456779999999999999987542 23568999999999999999999876433210  000       0111111111


Q ss_pred             HHHHHHhh----ccccccchhhhHHHHHHHh-----CCceEEEEEeCCCCH--HHHHHhhcCCCCCCCCcEEEEEeCCch
Q 039455          102 LLSEVLME----RNLIIWDVHKGINLIRWRL-----CRKRVLVVLDDVDQL--EQLQALAGNHDWFGFGSRIIITTRDEH  170 (216)
Q Consensus       102 l~~~~~~~----~~~~~~~~~~~~~~l~~~l-----~~~~~llvlDd~~~~--~~~~~l~~~~~~~~~~~~il~tsr~~~  170 (216)
                      +...-...    ........+.... +...+     .++..++|||+++.+  +....++..+..-...+.++++|.+..
T Consensus        78 i~~~~~~~~~~~~~~~~~~i~~ir~-~~~~~~~~~~~~~~kviiIde~d~l~~~~q~~Llk~lE~~~~~~~~il~tn~~~  156 (239)
T d1njfa_          78 IEQGRFVDLIEIDAASRTKVEDTRD-LLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQ  156 (239)
T ss_dssp             HHHTCCTTEEEEETTCSSSHHHHHH-HHHSCCCSCSSSSSEEEEEETGGGSCHHHHHHHHHHHHSCCTTEEEEEEESCGG
T ss_pred             HHcCCCCeEEEecchhcCCHHHHHH-HHHHHHhccccCCCEEEEEECcccCCHHHHHHHHHHHhcCCCCeEEEEEcCCcc
Confidence            11110000    0000001111111 11221     134569999999865  333334433322245667777776643


Q ss_pred             -hhhcc-CCcceEEecCCChHHHHHHHhhhhcCC--CCCchhHhhhc
Q 039455          171 -VLKGH-GVTNIYKVRGLDYVEALQLFHLKVSKG--KQPTDDRVELS  213 (216)
Q Consensus       171 -~~~~~-~~~~~~~l~~l~~~~~~~ll~~~~~~~--~~~~~~~~~l~  213 (216)
                       +...+ .....+.+.+++.++..+.+...+...  ..+++.++.|+
T Consensus       157 ~i~~~i~SRc~~i~~~~~~~~~i~~~l~~i~~~e~~~~~~~~l~~i~  203 (239)
T d1njfa_         157 KLPVTILSRCLQFHLKALDVEQIRHQLEHILNEEHIAHEPRALQLLA  203 (239)
T ss_dssp             GSCHHHHTTSEEEECCCCCHHHHHHHHHHHHHHHTCCBCHHHHHHHH
T ss_pred             ccChhHhhhhcccccccCcHHHhhhHHHHHHhhhccCCCHHHHHHHH
Confidence             22222 234789999999999999888765332  23444555444

>d1qvra2 c.37.1.20 (A:149-535) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpB, AAA+ modules
species: Thermus thermophilus [TaxId: 274]

Probab=99.23  E-value=3.2e-11  Score=95.82  Aligned_cols=153  Identities=11%  Similarity=0.070  Sum_probs=89.3

Q ss_pred             ccccccchhHHHHHHHHHhcCCCCeeEEEEEecCCCcHHHHHHHHHHHhcCC-C-----CceEeeccccccccccCchHH
Q 039455           25 VDGLVGIASRMEKMNGYLEAGLDDVRFIGICGMGGIGKTTLAKVLYNTLKDQ-F-----EASSFLANVREVSVTRGLVPL   98 (216)
Q Consensus        25 ~~~~vgR~~~~~~l~~~l~~~~~~~~~i~I~G~~GiGKTtL~~~~~~~~~~~-~-----~~~~~~~~~~~~~~~~~~~~~   98 (216)
                      .++.+||+.+++++...|.....  ..++++|++|+|||+++..+++++... .     ...+|..+++.+-.....   
T Consensus        21 ld~~~gr~~ei~~~~~~L~r~~k--~n~llvG~~GvGKtaiv~~la~~i~~~~vp~~l~~~~i~~ld~~~l~ag~~~---   95 (387)
T d1qvra2          21 LDPVIGRDEEIRRVIQILLRRTK--NNPVLIGEPGVGKTAIVEGLAQRIVKGDVPEGLKGKRIVSLQMGSLLAGAKY---   95 (387)
T ss_dssp             SCCCCSCHHHHHHHHHHHHCSSC--CCCEEEECTTSCHHHHHHHHHHHHHHTCSCTTSTTCEEEEECC------------
T ss_pred             CCCCcCcHHHHHHHHHHHhcCCC--CCCeEECCCCCCHHHHHHHHHHHHHhCCCCHHHcCceEEEeeHhhhhcccCc---
Confidence            35689999999999999885433  345778999999999999999876432 1     234444323221100000   


Q ss_pred             HHHHHHHHHhhccccccchhhhHHHH-HHHhCC-ceEEEEEeCCCCHH---------HH-HHhhcCCCCCCCCcEEEEEe
Q 039455           99 QEQLLSEVLMERNLIIWDVHKGINLI-RWRLCR-KRVLVVLDDVDQLE---------QL-QALAGNHDWFGFGSRIIITT  166 (216)
Q Consensus        99 ~~~l~~~~~~~~~~~~~~~~~~~~~l-~~~l~~-~~~llvlDd~~~~~---------~~-~~l~~~~~~~~~~~~il~ts  166 (216)
                                     .-.++.....+ ...... +.++|+||++..+-         +. .-|.+.+.  ....++|.+|
T Consensus        96 ---------------~g~~e~r~~~i~~~~~~~~~~~ilfide~h~l~~~g~~~g~~d~a~~Lkp~L~--rg~~~~I~~t  158 (387)
T d1qvra2          96 ---------------RGEFEERLKAVIQEVVQSQGEVILFIDELHTVVGAGKAEGAVDAGNMLKPALA--RGELRLIGAT  158 (387)
T ss_dssp             -----------------CHHHHHHHHHHHHHTTCSSEEEEECCC-------------------HHHHH--TTCCCEEEEE
T ss_pred             ---------------chhHHHHHHHHHHHhccCCCceEEEeccHHHHhcCCCCCCcccHHHHHHHHHh--CCCcceeeec
Confidence                           01222223232 233333 47899999996541         12 22222222  2346788877


Q ss_pred             CCchhhhc------cCCcceEEecCCChHHHHHHHhhhh
Q 039455          167 RDEHVLKG------HGVTNIYKVRGLDYVEALQLFHLKV  199 (216)
Q Consensus       167 r~~~~~~~------~~~~~~~~l~~l~~~~~~~ll~~~~  199 (216)
                      ...++...      ...++.+.+++.+.+++..+++...
T Consensus       159 T~~ey~~~e~d~al~rrF~~v~v~ep~~~~~~~il~~~~  197 (387)
T d1qvra2         159 TLDEYREIEKDPALERRFQPVYVDEPTVEETISILRGLK  197 (387)
T ss_dssp             CHHHHHHHTTCTTTCSCCCCEEECCCCHHHHHHHHHHHH
T ss_pred             CHHHHHHhcccHHHHHhcccccCCCCcHHHHHHHHHHHH
Confidence            76655321      1357999999999999999997543

>d1sxja2 c.37.1.20 (A:295-547) Replication factor C1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.16  E-value=1.3e-10  Score=87.28  Aligned_cols=180  Identities=17%  Similarity=0.132  Sum_probs=96.0

Q ss_pred             CCcccccccchhHHHHHHHHHhc---------------CCCCeeEEEEEecCCCcHHHHHHHHHHHhcCCCCceEeeccc
Q 039455           22 PSAVDGLVGIASRMEKMNGYLEA---------------GLDDVRFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLANV   86 (216)
Q Consensus        22 ~~~~~~~vgR~~~~~~l~~~l~~---------------~~~~~~~i~I~G~~GiGKTtL~~~~~~~~~~~~~~~~~~~~~   86 (216)
                      |..-.+++|.+..+++|..++..               +....+.++++||+|+||||+|+.+++.+...   ..++. .
T Consensus        10 P~~~~dlig~~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~lll~GPpG~GKTt~a~~la~~~~~~---~~~~~-~   85 (253)
T d1sxja2          10 PTNLQQVCGNKGSVMKLKNWLANWENSKKNSFKHAGKDGSGVFRAAMLYGPPGIGKTTAAHLVAQELGYD---ILEQN-A   85 (253)
T ss_dssp             CSSGGGCCSCHHHHHHHHHHHHTHHHHHHTTTCCCCTTSTTSCSEEEEECSTTSSHHHHHHHHHHHTTCE---EEEEC-T
T ss_pred             CCCHHHhcCCHHHHHHHHHHHHhhhhcchhhhhhhcccCCCCCceEEEECCCCCCHHHHHHHHHHHHHhh---hhccc-c
Confidence            44578899999999999998752               12345689999999999999999999876422   23332 1


Q ss_pred             cccccccCchHHHHHHHHHHHhhccccccchhhhHHHHHHHhCCceEEEEEeCCCCH-----HHHHHhhcCCCCCCCCcE
Q 039455           87 REVSVTRGLVPLQEQLLSEVLMERNLIIWDVHKGINLIRWRLCRKRVLVVLDDVDQL-----EQLQALAGNHDWFGFGSR  161 (216)
Q Consensus        87 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~llvlDd~~~~-----~~~~~l~~~~~~~~~~~~  161 (216)
                      +.   ...... ...........   ..................+..++++|+++..     ..+..+.....  .....
T Consensus        86 ~~---~~~~~~-~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~vi~ide~~~~~~~~~~~~~~~~~~~~--~~~~~  156 (253)
T d1sxja2          86 SD---VRSKTL-LNAGVKNALDN---MSVVGYFKHNEEAQNLNGKHFVIIMDEVDGMSGGDRGGVGQLAQFCR--KTSTP  156 (253)
T ss_dssp             TS---CCCHHH-HHHTGGGGTTB---CCSTTTTTC----CCSSTTSEEEEECSGGGCCTTSTTHHHHHHHHHH--HCSSC
T ss_pred             cc---chhhHH-HHHHHHHHhhc---chhhhhhhhhhhcccccccceEEEeeeccccccchhhhhHHHhhhhc--ccccc
Confidence            11   111111 11111000000   0000000001111122345678899987532     11222221111  11233


Q ss_pred             EEEEeCCc--hhhhcc-CCcceEEecCCChHHHHHHHhhhhcCC--CCCchhHhhhcc
Q 039455          162 IIITTRDE--HVLKGH-GVTNIYKVRGLDYVEALQLFHLKVSKG--KQPTDDRVELSK  214 (216)
Q Consensus       162 il~tsr~~--~~~~~~-~~~~~~~l~~l~~~~~~~ll~~~~~~~--~~~~~~~~~l~~  214 (216)
                      +++++.+.  .....+ .....+++.+++.++....+...+-..  ..+++.+++|++
T Consensus       157 ii~i~~~~~~~~~~~l~~~~~~i~f~~~~~~~i~~~l~~i~~~e~i~i~~~~l~~i~~  214 (253)
T d1sxja2         157 LILICNERNLPKMRPFDRVCLDIQFRRPDANSIKSRLMTIAIREKFKLDPNVIDRLIQ  214 (253)
T ss_dssp             EEEEESCTTSSTTGGGTTTSEEEECCCCCHHHHHHHHHHHHHHHTCCCCTTHHHHHHH
T ss_pred             cccccccccccccccccceeeeeeccccchhHHHHHHHHHHHHhCCCCCHHHHHHHHH
Confidence            55554432  222222 345789999999999999998765322  245556676654

>d1r7ra3 c.37.1.20 (A:471-735) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Membrane fusion ATPase VCP/p97
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.15  E-value=5.9e-11  Score=90.02  Aligned_cols=154  Identities=14%  Similarity=0.144  Sum_probs=89.9

Q ss_pred             ccccccchhHHHHHHHHHh----c-------CCCCeeEEEEEecCCCcHHHHHHHHHHHhcCCCCceEeecccccccccc
Q 039455           25 VDGLVGIASRMEKMNGYLE----A-------GLDDVRFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLANVREVSVTR   93 (216)
Q Consensus        25 ~~~~vgR~~~~~~l~~~l~----~-------~~~~~~~i~I~G~~GiGKTtL~~~~~~~~~~~~~~~~~~~~~~~~~~~~   93 (216)
                      -..+.|-++..++|.+.+.    .       +-...+.+.++||+|+|||+|++.+++.+..+    ++......     
T Consensus         6 f~di~G~~~~k~~l~~~i~~~l~~~~~~~~~g~~~~~giLL~Gp~GtGKT~l~~ala~~~~~~----~~~~~~~~-----   76 (265)
T d1r7ra3           6 WEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQAN----FISIKGPE-----   76 (265)
T ss_dssp             CSSCSSSSCCCCHHHHHTHHHHHCHHHHHHCCCCCCCEEEEBCCTTSSHHHHHHHHHHHTTCE----EEEECHHH-----
T ss_pred             HHHhcCHHHHHHHHHHHHHHHhhCHHHHHhCCCCCCCeEEEECCCCCcchhHHHHHHHHhCCc----EEEEEHHH-----
Confidence            3457788887777766442    1       22335689999999999999999999987432    22211111     


Q ss_pred             CchHHHHHHHHHHHhhccccccchhhhHHHHHHHhCCceEEEEEeCCCCH------------H----HHHHhhcCCCCC-
Q 039455           94 GLVPLQEQLLSEVLMERNLIIWDVHKGINLIRWRLCRKRVLVVLDDVDQL------------E----QLQALAGNHDWF-  156 (216)
Q Consensus        94 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~llvlDd~~~~------------~----~~~~l~~~~~~~-  156 (216)
                              +.    ..  ............+..+-...+++|+|||++..            .    ....++..+... 
T Consensus        77 --------l~----~~--~~~~~~~~l~~~f~~A~~~~p~il~ideid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~  142 (265)
T d1r7ra3          77 --------LL----TM--WFGESEANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMS  142 (265)
T ss_dssp             --------HH----TS--CTTTHHHHHHHHHHHHHHTCSEEEEESSGGGTCCHHHHCCCTTHHHHHHHHHHHHHTCC---
T ss_pred             --------hh----hc--cccchHHHHHHHHHHHHhcCCcceeHHhhhhccccCCCcCCCCcHHHHHHHHHHHHHhhCcC
Confidence                    00    00  00011112223333444567899999998632            0    123444444322 


Q ss_pred             -CCCcEEEEEeCCchhhhc-c----CCcceEEecCCChHHHHHHHhhhhcC
Q 039455          157 -GFGSRIIITTRDEHVLKG-H----GVTNIYKVRGLDYVEALQLFHLKVSK  201 (216)
Q Consensus       157 -~~~~~il~tsr~~~~~~~-~----~~~~~~~l~~l~~~~~~~ll~~~~~~  201 (216)
                       ..+.-+|.||+.+..... +    ..+..+++++.+.++..++|+.+...
T Consensus       143 ~~~~v~vi~ttn~~~~ld~al~r~gRf~~~i~~~~p~~~~R~~il~~~l~~  193 (265)
T d1r7ra3         143 TKKNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSRVAILKANLRK  193 (265)
T ss_dssp             ---CCEEEECCBSCTTTSCGGGSSTTSEEEEECCCCCCHHHHHHHHHHTTC
T ss_pred             CCCCEEEEEeCCCchhCCHHHhCCCCccEEEEecchHHHHHHHHHHHHhcc
Confidence             234566777776643221 1    24678999999999999999876643

>d1in4a2 c.37.1.20 (A:17-254) Holliday junction helicase RuvB {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Holliday junction helicase RuvB
species: Thermotoga maritima [TaxId: 2336]

Probab=99.13  E-value=2.7e-10  Score=84.74  Aligned_cols=162  Identities=15%  Similarity=0.138  Sum_probs=92.5

Q ss_pred             CCcccccccchhHHHHHHHHHhcC---CCCeeEEEEEecCCCcHHHHHHHHHHHhcCCCCceEeeccccccccccCchHH
Q 039455           22 PSAVDGLVGIASRMEKMNGYLEAG---LDDVRFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLANVREVSVTRGLVPL   98 (216)
Q Consensus        22 ~~~~~~~vgR~~~~~~l~~~l~~~---~~~~~~i~I~G~~GiGKTtL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   98 (216)
                      |..-++++|.+...+.|..++...   +...+.+.++||+|+|||++|+.++..+...+  . .+. ...   ...... 
T Consensus         5 P~~~~divGqe~~~~~l~~~i~~~~~~~~~~~~~L~~GPpGtGKT~lA~~la~~~~~~~--~-~~~-~~~---~~~~~~-   76 (238)
T d1in4a2           5 PKSLDEFIGQENVKKKLSLALEAAKMRGEVLDHVLLAGPPGLGKTTLAHIIASELQTNI--H-VTS-GPV---LVKQGD-   76 (238)
T ss_dssp             CSSGGGCCSCHHHHHHHHHHHHHHHHHTCCCCCEEEESSTTSSHHHHHHHHHHHHTCCE--E-EEE-TTT---CCSHHH-
T ss_pred             CCcHHHcCChHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCcHHHHHHHHHhccCCCc--c-ccc-Ccc---cccHHH-
Confidence            345678999999999999887632   33456799999999999999999998875332  1 111 110   011101 


Q ss_pred             HHHHHHHHHhhccccccchhhhHHHHHHHhCCceEEEEEeCCCCHHH-----HHHhhcCCC---------------CCCC
Q 039455           99 QEQLLSEVLMERNLIIWDVHKGINLIRWRLCRKRVLVVLDDVDQLEQ-----LQALAGNHD---------------WFGF  158 (216)
Q Consensus        99 ~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~llvlDd~~~~~~-----~~~l~~~~~---------------~~~~  158 (216)
                      ...+                     +.  ...+...+++|+++....     +........               ...+
T Consensus        77 ~~~~---------------------~~--~~~~~~~~~ide~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  133 (238)
T d1in4a2          77 MAAI---------------------LT--SLERGDVLFIDEIHRLNKAVEELLYSAIEDFQIDIMIGKGPSAKSIRIDIQ  133 (238)
T ss_dssp             HHHH---------------------HH--HCCTTCEEEEETGGGCCHHHHHHHHHHHHTSCCCC---------------C
T ss_pred             HHHH---------------------HH--hhccCCchHHHHHHHhhhHHHhhcccceeeeeeeeeecCcccccccccCCC
Confidence            0011                     11  123445777887764411     111111110               0012


Q ss_pred             CcEEEEEeCCchh---hhccCCcceEEecCCChHHHHHHHhhhhcCCC--CCchhHhhhcc
Q 039455          159 GSRIIITTRDEHV---LKGHGVTNIYKVRGLDYVEALQLFHLKVSKGK--QPTDDRVELSK  214 (216)
Q Consensus       159 ~~~il~tsr~~~~---~~~~~~~~~~~l~~l~~~~~~~ll~~~~~~~~--~~~~~~~~l~~  214 (216)
                      .+.+|++|.....   .....+...+.+++.+.++...++........  .+++.++++++
T Consensus       134 ~~~~I~at~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~i~~  194 (238)
T d1in4a2         134 PFTLVGATTRSGLLSSPLRSRFGIILELDFYTVKELKEIIKRAASLMDVEIEDAAAEMIAK  194 (238)
T ss_dssp             CCEEEEEESCGGGSCHHHHTTCSEEEECCCCCHHHHHHHHHHHHHHTTCCBCHHHHHHHHH
T ss_pred             CeEEEEecCCCccccccceeeeeEEEEecCCCHHHHHHHHHHhhhhccchhhHHHHHHHHH
Confidence            4455555554432   11223556789999999999999987764443  34445655543

>d1d2na_ c.37.1.20 (A:) Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein {Chinese hamster (Cricetulus griseus) [TaxId: 10029]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein
species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]

Probab=99.03  E-value=3.1e-09  Score=79.39  Aligned_cols=50  Identities=16%  Similarity=0.148  Sum_probs=36.7

Q ss_pred             ccccccchhHHHHHHHHHh-------c-CCCCeeEEEEEecCCCcHHHHHHHHHHHhc
Q 039455           25 VDGLVGIASRMEKMNGYLE-------A-GLDDVRFIGICGMGGIGKTTLAKVLYNTLK   74 (216)
Q Consensus        25 ~~~~vgR~~~~~~l~~~l~-------~-~~~~~~~i~I~G~~GiGKTtL~~~~~~~~~   74 (216)
                      ...++|..+.++.+.+-..       . .......|.++||+|+|||++|+.+++...
T Consensus         8 ~~~~i~~~~~i~~i~~~~~~~~~~~~~~~~~p~~~vLL~GppGtGKT~la~alA~~~~   65 (246)
T d1d2na_           8 MNGIIKWGDPVTRVLDDGELLVQQTKNSDRTPLVSVLLEGPPHSGKTALAAKIAEESN   65 (246)
T ss_dssp             TTCCCCCSHHHHHHHHHHHHHHHHHHHCSSCSEEEEEEECSTTSSHHHHHHHHHHHHT
T ss_pred             ccCCcCcCHHHHHHHHHHHHHHHHHhccCCCCCeEEEEECcCCCCHHHHHHHHhhccc
Confidence            4558888887776654321       1 122356799999999999999999998764

>d1ixsb2 c.37.1.20 (B:4-242) Holliday junction helicase RuvB {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Holliday junction helicase RuvB
species: Thermus thermophilus [TaxId: 274]

Probab=99.00  E-value=1.4e-09  Score=80.88  Aligned_cols=53  Identities=34%  Similarity=0.537  Sum_probs=43.4

Q ss_pred             CCcccccccchhHHHHHHHHHhcC---CCCeeEEEEEecCCCcHHHHHHHHHHHhc
Q 039455           22 PSAVDGLVGIASRMEKMNGYLEAG---LDDVRFIGICGMGGIGKTTLAKVLYNTLK   74 (216)
Q Consensus        22 ~~~~~~~vgR~~~~~~l~~~l~~~---~~~~~~i~I~G~~GiGKTtL~~~~~~~~~   74 (216)
                      |..-++++|.++..+.|..++...   ....+.+.++||+|+||||+|+.+++.+.
T Consensus         5 P~~~ddivGq~~~~~~L~~~i~~~~~~~~~~~~~Ll~GPpG~GKTtla~~la~~~~   60 (239)
T d1ixsb2           5 PKTLDEYIGQERLKQKLRVYLEAAKARKEPLEHLLLFGPPGLGKTTLAHVIAHELG   60 (239)
T ss_dssp             CCSGGGSCSCHHHHHHHHHHHHHHTTSSSCCCCEEEECCTTSCHHHHHHHHHHHHT
T ss_pred             CCCHHHhCCHHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHHhC
Confidence            445678999999999998887632   33457889999999999999999998764

>d1a5ta2 c.37.1.20 (A:1-207) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: delta prime subunit of DNA polymerase III, N-domain
species: Escherichia coli [TaxId: 562]

Probab=98.96  E-value=1.2e-08  Score=74.12  Aligned_cols=159  Identities=15%  Similarity=0.087  Sum_probs=87.1

Q ss_pred             cchhHHHHHHHHHhcCCCCeeEEEEEecCCCcHHHHHHHHHHHhcCCCCceEeeccccccccccCchHHHHHHHHHHHhh
Q 039455           30 GIASRMEKMNGYLEAGLDDVRFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLANVREVSVTRGLVPLQEQLLSEVLME  109 (216)
Q Consensus        30 gR~~~~~~l~~~l~~~~~~~~~i~I~G~~GiGKTtL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  109 (216)
                      +-+...++|...+... .-...+.++||+|+||||+|+.++..+....+.. +-.        -........+.......
T Consensus         6 w~~~~~~~l~~~~~~~-~l~h~lLl~Gp~G~GKtt~a~~~a~~l~~~~~~~-~~~--------~~~~~~~~~i~~~~~~~   75 (207)
T d1a5ta2           6 WLRPDFEKLVASYQAG-RGHHALLIQALPGMGDDALIYALSRYLLCQQPQG-HKS--------CGHCRGCQLMQAGTHPD   75 (207)
T ss_dssp             GGHHHHHHHHHHHHTT-CCCSEEEEECCTTSCHHHHHHHHHHHHTCSSCBT-TBC--------CSCSHHHHHHHHTCCTT
T ss_pred             ccHHHHHHHHHHHHcC-CcCeEEEEECCCCCcHHHHHHHHHHhcccccccc-ccc--------ccccchhhhhhhccccc
Confidence            4556677787777643 2235699999999999999999998764221100 000        00000011111000000


Q ss_pred             -------ccccccchhhhHHHHHHHh-----CCceEEEEEeCCCCH--HHHHHhhcCCCCCCCCcEEEEEeCCch-hhhc
Q 039455          110 -------RNLIIWDVHKGINLIRWRL-----CRKRVLVVLDDVDQL--EQLQALAGNHDWFGFGSRIIITTRDEH-VLKG  174 (216)
Q Consensus       110 -------~~~~~~~~~~~~~~l~~~l-----~~~~~llvlDd~~~~--~~~~~l~~~~~~~~~~~~il~tsr~~~-~~~~  174 (216)
                             ........+. +..+...+     .++.-++|+||++..  +....++..+..-..+..+|++|++.. +...
T Consensus        76 ~~~~~~~~~~~~i~~~~-ir~l~~~~~~~~~~~~~kviIide~d~l~~~a~n~Llk~lEep~~~~~fIl~t~~~~~ll~t  154 (207)
T d1a5ta2          76 YYTLAPEKGKNTLGVDA-VREVTEKLNEHARLGGAKVVWVTDAALLTDAAANALLKTLEEPPAETWFFLATREPERLLAT  154 (207)
T ss_dssp             EEEECCCTTCSSBCHHH-HHHHHHHTTSCCTTSSCEEEEESCGGGBCHHHHHHHHHHHTSCCTTEEEEEEESCGGGSCHH
T ss_pred             cchhhhhhcccccccch-hhHHhhhhhhccccCccceEEechhhhhhhhhhHHHHHHHHhhcccceeeeeecChhhhhhh
Confidence                   0000001111 11122222     235679999999854  444455444433346677788787653 3332


Q ss_pred             c-CCcceEEecCCChHHHHHHHhhhh
Q 039455          175 H-GVTNIYKVRGLDYVEALQLFHLKV  199 (216)
Q Consensus       175 ~-~~~~~~~l~~l~~~~~~~ll~~~~  199 (216)
                      + .....+.+.+++.++...++....
T Consensus       155 I~SRc~~i~~~~~~~~~~~~~L~~~~  180 (207)
T d1a5ta2         155 LRSRCRLHYLAPPPEQYAVTWLSREV  180 (207)
T ss_dssp             HHTTSEEEECCCCCHHHHHHHHHHHC
T ss_pred             hcceeEEEecCCCCHHHHHHHHHHcC
Confidence            2 234889999999999999998654

>d1vpla_ c.37.1.12 (A:) Putative ABC transporter TM0544 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative ABC transporter TM0544
species: Thermotoga maritima [TaxId: 2336]

Probab=98.85  E-value=5e-09  Score=77.66  Aligned_cols=55  Identities=15%  Similarity=0.146  Sum_probs=39.3

Q ss_pred             hhHHHHHHHhCCceEEEEEeCCC------CHHHHHHhhcCCCCCCCCcEEEEEeCCchhhhcc
Q 039455          119 KGINLIRWRLCRKRVLVVLDDVD------QLEQLQALAGNHDWFGFGSRIIITTRDEHVLKGH  175 (216)
Q Consensus       119 ~~~~~l~~~l~~~~~llvlDd~~------~~~~~~~l~~~~~~~~~~~~il~tsr~~~~~~~~  175 (216)
                      ...-.+...+..++-+|++|+.-      ....+..++..+.  ..|..||++||+.+.+..+
T Consensus       139 ~qrv~iA~al~~~p~illLDEPt~gLD~~~~~~i~~~i~~~~--~~g~tii~~tH~l~~~~~~  199 (238)
T d1vpla_         139 VRKLLIARALMVNPRLAILDEPTSGLDVLNAREVRKILKQAS--QEGLTILVSSHNMLEVEFL  199 (238)
T ss_dssp             HHHHHHHHHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHHHH--HTTCEEEEEECCHHHHTTT
T ss_pred             HHHHHHHHHHhcCCCEEEecCCCCCCCHHHHHHHHHHHHHHH--hcCCEEEEEeCCHHHHHHh
Confidence            33446888999999999999773      2234445544443  3578999999999887766

>d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Maltose transport protein MalK, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=98.81  E-value=1.2e-09  Score=80.49  Aligned_cols=57  Identities=16%  Similarity=0.102  Sum_probs=35.0

Q ss_pred             hhhHHHHHHHhCCceEEEEEeCCCCH------HHHHHhhcCCCCCCCCcEEEEEeCCchhhhcc
Q 039455          118 HKGINLIRWRLCRKRVLVVLDDVDQL------EQLQALAGNHDWFGFGSRIIITTRDEHVLKGH  175 (216)
Q Consensus       118 ~~~~~~l~~~l~~~~~llvlDd~~~~------~~~~~l~~~~~~~~~~~~il~tsr~~~~~~~~  175 (216)
                      +.....+.+.+..+|-+|++|+.-+.      .++..++..+. ...+.++|++||+.+.+..+
T Consensus       135 qkQRvaiAraL~~~P~illlDEPts~LD~~~~~~i~~~l~~l~-~~~g~tii~vTHd~~~a~~~  197 (232)
T d2awna2         135 QRQRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQMRIEISRLH-KRLGRTMIYVTHDQVEAMTL  197 (232)
T ss_dssp             -----CHHHHHHTCCSEEEEESTTTTSCHHHHHHHHHHHHHHH-HHSCCEEEEEESCHHHHHHH
T ss_pred             HHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHHHH-HhcCCEEEEEeCCHHHHHHh
Confidence            33444578888899999999987321      23333332221 02478899999998877665

>d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK, N-terminal domain {Archaeon Thermococcus litoralis [TaxId: 2265]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Maltose transport protein MalK, N-terminal domain
species: Archaeon Thermococcus litoralis [TaxId: 2265]

Probab=98.78  E-value=4.1e-09  Score=77.93  Aligned_cols=58  Identities=14%  Similarity=0.099  Sum_probs=39.0

Q ss_pred             hhhhHHHHHHHhCCceEEEEEeCCCC------HHHHHHhhcCCCCCCCCcEEEEEeCCchhhhcc
Q 039455          117 VHKGINLIRWRLCRKRVLVVLDDVDQ------LEQLQALAGNHDWFGFGSRIIITTRDEHVLKGH  175 (216)
Q Consensus       117 ~~~~~~~l~~~l~~~~~llvlDd~~~------~~~~~~l~~~~~~~~~~~~il~tsr~~~~~~~~  175 (216)
                      .+.....+.+.+..+|-+|++|+.-.      ...+..++..+.. ..+..||++||+.+.+..+
T Consensus       143 GqkQRv~IAraL~~~P~iLllDEPt~~LD~~~~~~i~~~l~~l~~-~~g~tvi~vTHd~~~~~~~  206 (240)
T d1g2912         143 GQRQRVALGRAIVRKPQVFLMDEPLSNLDAKLRVRMRAELKKLQR-QLGVTTIYVTHDQVEAMTM  206 (240)
T ss_dssp             HHHHHHHHHHHHHTCCSEEEEECTTTTSCHHHHHHHHHHHHHHHH-HHTCEEEEEESCHHHHHHH
T ss_pred             HHHHHHHHHHHHhcCCCEEEecCCCcccCHHHHHHHHHHHHHHHh-ccCCEEEEEcCCHHHHHHh
Confidence            34445578999999999999998732      2333333333210 2378899999998876665

>d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Hypothetical protein PH0022, N-terminal domain
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=98.76  E-value=2.7e-09  Score=78.87  Aligned_cols=65  Identities=9%  Similarity=-0.017  Sum_probs=42.5

Q ss_pred             chhhhHHHHHHHhCCceEEEEEeCCCC------HHHHHHhhcCCCCCCCCcEEEEEeCCchhhhccCCcceEE
Q 039455          116 DVHKGINLIRWRLCRKRVLVVLDDVDQ------LEQLQALAGNHDWFGFGSRIIITTRDEHVLKGHGVTNIYK  182 (216)
Q Consensus       116 ~~~~~~~~l~~~l~~~~~llvlDd~~~------~~~~~~l~~~~~~~~~~~~il~tsr~~~~~~~~~~~~~~~  182 (216)
                      ..+.....+.+.+..+|-+|++|+.-+      ...+..++..+.. ..+.++|++||+...+..+ ++..+-
T Consensus       139 GGq~QRvaiAraL~~~P~iLllDEPts~LD~~~~~~i~~ll~~l~~-~~g~tii~vTHd~~~a~~~-~dri~v  209 (239)
T d1v43a3         139 GGQRQRVAVARAIVVEPDVLLMDEPLSNLDAKLRVAMRAEIKKLQQ-KLKVTTIYVTHDQVEAMTM-GDRIAV  209 (239)
T ss_dssp             SSCHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHH-HHTCEEEEEESCHHHHHHH-CSEEEE
T ss_pred             HHHHHHHHHHhhhccCCCceeecCCcccCCHHHHHHHHHHHHHHHH-hcCCeEEEEeCCHHHHHHh-CCEEEE
Confidence            344556678999999999999998732      2333333333210 2378899999999887665 444333

>d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV, N-terminal domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Glucose transport protein GlcV, N-terminal domain
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=98.76  E-value=3.8e-09  Score=78.13  Aligned_cols=65  Identities=12%  Similarity=0.161  Sum_probs=42.3

Q ss_pred             hhhhHHHHHHHhCCceEEEEEeCCC------CHHHHHHhhcCCCCCCCCcEEEEEeCCchhhhccCCcceEEe
Q 039455          117 VHKGINLIRWRLCRKRVLVVLDDVD------QLEQLQALAGNHDWFGFGSRIIITTRDEHVLKGHGVTNIYKV  183 (216)
Q Consensus       117 ~~~~~~~l~~~l~~~~~llvlDd~~------~~~~~~~l~~~~~~~~~~~~il~tsr~~~~~~~~~~~~~~~l  183 (216)
                      .+.....+.+.+..+|-+|++|+.-      ...++..++..+.. ..+.++|++||+.+.+..+ ++..+-+
T Consensus       144 GqkQRvaiARaL~~~P~llllDEPt~~LD~~~~~~i~~~i~~l~~-~~g~tvi~vTHd~~~~~~~-~dri~vm  214 (242)
T d1oxxk2         144 AQQQRVALARALVKDPSLLLLDEPFSNLDARMRDSARALVKEVQS-RLGVTLLVVSHDPADIFAI-ADRVGVL  214 (242)
T ss_dssp             HHHHHHHHHHHHTTCCSEEEEESTTTTSCGGGHHHHHHHHHHHHH-HHCCEEEEEESCHHHHHHH-CSEEEEE
T ss_pred             HHHhHHHHHhHHhhcccceeecCCccCCCHHHHHHHHHHHHHHHh-ccCCEEEEEECCHHHHHHh-CCEEEEE
Confidence            3445557899999999999999773      23444444433310 2368899999998776665 3443333

>d1l2ta_ c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: MJ0796
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=98.74  E-value=2.6e-08  Score=73.15  Aligned_cols=65  Identities=15%  Similarity=0.179  Sum_probs=43.1

Q ss_pred             hhhhHHHHHHHhCCceEEEEEeCCCCH------HHHHHhhcCCCCCCCCcEEEEEeCCchhhhccCCcceEEec
Q 039455          117 VHKGINLIRWRLCRKRVLVVLDDVDQL------EQLQALAGNHDWFGFGSRIIITTRDEHVLKGHGVTNIYKVR  184 (216)
Q Consensus       117 ~~~~~~~l~~~l~~~~~llvlDd~~~~------~~~~~l~~~~~~~~~~~~il~tsr~~~~~~~~~~~~~~~l~  184 (216)
                      .+.....+.+++..+|-+|++|+.-+.      .++..++..+. ...+.++|++||+.+++. + +++.+.+.
T Consensus       149 GqkQRvaIAraL~~~P~lLllDEPTs~LD~~~~~~i~~~l~~l~-~~~g~tii~vTHd~~~a~-~-~drv~~m~  219 (230)
T d1l2ta_         149 GQQQRVAIARALANNPPIILADQPTGALDSKTGEKIMQLLKKLN-EEDGKTVVVVTHDINVAR-F-GERIIYLK  219 (230)
T ss_dssp             HHHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHH-HTTCCEEEEECSCHHHHT-T-SSEEEEEE
T ss_pred             HHHHHHHHHhhhhcCCCEEEecCCccccCHHHHHHHHHHHHHHH-HhhCCEEEEECCCHHHHH-h-CCEEEEEE
Confidence            444566789999999999999987321      23333333321 034788999999998764 4 66665553

>d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.74  E-value=4.4e-08  Score=74.24  Aligned_cols=128  Identities=14%  Similarity=0.122  Sum_probs=65.9

Q ss_pred             CCeeEEEEEecCCCcHHHHHHHHHHHhcCCCC------ceEeeccc---------cccccccCc-hHHHHHHHHHH----
Q 039455           47 DDVRFIGICGMGGIGKTTLAKVLYNTLKDQFE------ASSFLANV---------REVSVTRGL-VPLQEQLLSEV----  106 (216)
Q Consensus        47 ~~~~~i~I~G~~GiGKTtL~~~~~~~~~~~~~------~~~~~~~~---------~~~~~~~~~-~~~~~~l~~~~----  106 (216)
                      ..+..++|+|++|+|||||++.+++.+...-.      .+.|+.-.         ..+...... ......++...    
T Consensus        60 ~~Ge~vaivG~nGsGKSTLl~~i~Gl~~p~~G~I~~~g~i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~  139 (281)
T d1r0wa_          60 EKGEMLAITGSTGSGKTSLLMLILGELEASEGIIKHSGRVSFCSQFSWIMPGTIKENIIFGVSYDEYRYKSVVKACQLQQ  139 (281)
T ss_dssp             CTTCEEEEEESTTSSHHHHHHHHHTSSCCSEEEEECCSCEEEECSSCCCCSEEHHHHHTTTSCCCHHHHHHHHHHTTCHH
T ss_pred             cCCCEEEEECCCCChHHHHHHHHhCCCcCCCcEEEECCEEEEEeccccccCceeeccccccccccchHHHHHHHHHHhHH
Confidence            35689999999999999999999986543211      11111100         000000000 01111111111    


Q ss_pred             --Hh---hcc-------ccccchhhhHHHHHHHhCCceEEEEEeCCCC-HHH--HHHhh-cCCCCCCCCcEEEEEeCCch
Q 039455          107 --LM---ERN-------LIIWDVHKGINLIRWRLCRKRVLVVLDDVDQ-LEQ--LQALA-GNHDWFGFGSRIIITTRDEH  170 (216)
Q Consensus       107 --~~---~~~-------~~~~~~~~~~~~l~~~l~~~~~llvlDd~~~-~~~--~~~l~-~~~~~~~~~~~il~tsr~~~  170 (216)
                        ..   ...       ...+..+...-.+.+.+..++-+++||+.-+ ++.  -..+. ........+..+|++||..+
T Consensus       140 ~i~~l~~~~~~~~~~~~~~LSgGqkQRv~lARaL~~~p~illLDEPts~LD~~~~~~i~~~~~~~~~~~~tvi~itH~~~  219 (281)
T d1r0wa_         140 DITKFAEQDNTVLGEGGVTLSGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEEQVFESCVCKLMANKTRILVTSKME  219 (281)
T ss_dssp             HHTTSTTGGGCEECTTCTTSCHHHHHHHHHHHHHHSCCSEEEEESCCCSSCHHHHHHHHHHCCCCCTTTSEEEEECSCHH
T ss_pred             HHHhchhhhhhhhhhhccCCCHHHHHHHHHHHHHHhCccchhhcCccccCCHHHHHHHHHHHHHHhhCCCEEEEEechHH
Confidence              00   000       0123344555568888889999999998842 211  12222 12222235677888888876


Q ss_pred             hhhc
Q 039455          171 VLKG  174 (216)
Q Consensus       171 ~~~~  174 (216)
                      .+..
T Consensus       220 ~l~~  223 (281)
T d1r0wa_         220 HLRK  223 (281)
T ss_dssp             HHHT
T ss_pred             HHHh
Confidence            6544

>d3dhwc1 c.37.1.12 (C:1-240) Methionine import ATP-binding protein MetN {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Methionine import ATP-binding protein MetN
species: Escherichia coli [TaxId: 562]

Probab=98.74  E-value=6.6e-09  Score=76.81  Aligned_cols=57  Identities=18%  Similarity=0.222  Sum_probs=38.2

Q ss_pred             hhhHHHHHHHhCCceEEEEEeCCC------CHHHHHHhhcCCCCCCCCcEEEEEeCCchhhhcc
Q 039455          118 HKGINLIRWRLCRKRVLVVLDDVD------QLEQLQALAGNHDWFGFGSRIIITTRDEHVLKGH  175 (216)
Q Consensus       118 ~~~~~~l~~~l~~~~~llvlDd~~------~~~~~~~l~~~~~~~~~~~~il~tsr~~~~~~~~  175 (216)
                      +.....+.+.+..+|-+|++|+.-      ....+..++..+. ...+..+|++||+...+..+
T Consensus       145 ~~QRvaiAraL~~~P~lLllDEPt~~LD~~~~~~i~~~l~~l~-~~~g~tvi~vTHdl~~~~~~  207 (240)
T d3dhwc1         145 QKQRVAIARALASNPKVLLCDEATSALDPATTRSILELLKDIN-RRLGLTILLITHEMDVVKRI  207 (240)
T ss_dssp             HHHHHHHHHHHHTCCSEEEEESGGGSSCHHHHHHHHHHHHHHH-HHHCCEEEEEBSCHHHHHHH
T ss_pred             HHHHHHHhhhhccCCCeEEeccccccCCHHHhhHHHHHHHHHH-hccCCEEEEEcCCHHHHHHh
Confidence            444556888999999999999762      2233333333322 02378899999998877665

>d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter {Thermotoga maritima, TM1139 [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Branched chain aminoacid ABC transporter
species: Thermotoga maritima, TM1139 [TaxId: 2336]

Probab=98.73  E-value=3.2e-09  Score=78.84  Aligned_cols=57  Identities=11%  Similarity=0.135  Sum_probs=39.1

Q ss_pred             hhhhHHHHHHHhCCceEEEEEeCCCC------HHHHHHhhcCCCCCCCCcEEEEEeCCchhhhcc
Q 039455          117 VHKGINLIRWRLCRKRVLVVLDDVDQ------LEQLQALAGNHDWFGFGSRIIITTRDEHVLKGH  175 (216)
Q Consensus       117 ~~~~~~~l~~~l~~~~~llvlDd~~~------~~~~~~l~~~~~~~~~~~~il~tsr~~~~~~~~  175 (216)
                      .+...-.+.+++..+|-+|++|+.-.      ...+..++..+.  ..|..||++||+.+.+..+
T Consensus       143 G~~Qrv~iAraL~~~P~lLllDEPt~gLD~~~~~~i~~~i~~l~--~~g~til~~tH~l~~~~~~  205 (240)
T d1ji0a_         143 GEQQMLAIGRALMSRPKLLMMDEPSLGLAPILVSEVFEVIQKIN--QEGTTILLVEQNALGALKV  205 (240)
T ss_dssp             HHHHHHHHHHHHTTCCSEEEEECTTTTCCHHHHHHHHHHHHHHH--HTTCCEEEEESCHHHHHHH
T ss_pred             HHHHHHHHHHHHHhCCCEeeecCCCcCCCHHHHHHHHHHHHHHH--hCCCEEEEEeCCHHHHHHh
Confidence            34445568889999999999998732      234444444443  3478899999997665554

>d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine permease {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: ATP-binding subunit of the histidine permease
species: Salmonella typhimurium [TaxId: 90371]

Probab=98.70  E-value=1e-08  Score=76.87  Aligned_cols=56  Identities=9%  Similarity=0.137  Sum_probs=38.4

Q ss_pred             hhhHHHHHHHhCCceEEEEEeCCCC------HHHHHHhhcCCCCCCCCcEEEEEeCCchhhhcc
Q 039455          118 HKGINLIRWRLCRKRVLVVLDDVDQ------LEQLQALAGNHDWFGFGSRIIITTRDEHVLKGH  175 (216)
Q Consensus       118 ~~~~~~l~~~l~~~~~llvlDd~~~------~~~~~~l~~~~~~~~~~~~il~tsr~~~~~~~~  175 (216)
                      +.....+.+.+..+|-+|++|+.-.      ..++..++..+.  ..|..||++||+.+.+..+
T Consensus       154 ~~QRv~iAraL~~~P~llilDEPT~gLD~~~~~~i~~ll~~l~--~~g~til~vtHdl~~~~~~  215 (258)
T d1b0ua_         154 QQQRVSIARALAMEPDVLLFDEPTSALDPELVGEVLRIMQQLA--EEGKTMVVVTHEMGFARHV  215 (258)
T ss_dssp             HHHHHHHHHHHHTCCSEEEEESTTTTSCHHHHHHHHHHHHHHH--HTTCCEEEECSCHHHHHHH
T ss_pred             HHHHHHHHHHHhcCCCEEEeccccccCCHHHHHHHHHhhhhhc--ccCCceEEEeCCHHHHHHh
Confidence            3444568888889999999998732      233444444443  2467899999998776665

>d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter, ATP-binding protein {Methanosarcina acetivorans [TaxId: 2214]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Sulfate/molybdate ABC transporter, ATP-binding protein
species: Methanosarcina acetivorans [TaxId: 2214]

Probab=98.68  E-value=1.5e-08  Score=74.34  Aligned_cols=57  Identities=11%  Similarity=0.035  Sum_probs=38.3

Q ss_pred             hhhHHHHHHHhCCceEEEEEeCCCC------HHHHHHhhcCCCCCCCCcEEEEEeCCchhhhcc
Q 039455          118 HKGINLIRWRLCRKRVLVVLDDVDQ------LEQLQALAGNHDWFGFGSRIIITTRDEHVLKGH  175 (216)
Q Consensus       118 ~~~~~~l~~~l~~~~~llvlDd~~~------~~~~~~l~~~~~~~~~~~~il~tsr~~~~~~~~  175 (216)
                      +...-.+.+++..+|-+|++|+.-+      ...+..++..+.. ..+..||++||+.+.+..+
T Consensus       132 ~~QRvaiAraL~~~P~iLllDEPts~LD~~~~~~i~~~l~~l~~-~~g~tii~vtHd~~~~~~~  194 (229)
T d3d31a2         132 EQQRVALARALVTNPKILLLDEPLSALDPRTQENAREMLSVLHK-KNKLTVLHITHDQTEARIM  194 (229)
T ss_dssp             HHHHHHHHHHTTSCCSEEEEESSSTTSCHHHHHHHHHHHHHHHH-HTTCEEEEEESCHHHHHHH
T ss_pred             HhcchhhhhhhhccCCceeecCCCcCCCHHHHHHHHHHHHHHHh-cCCcEEEEEcCCHHHHHHh
Confidence            3445568999999999999998732      2333343333210 2468899999998776665

>d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein Aq_1292 {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Hypothetical kinase-like protein Aq 1292
species: Aquifex aeolicus [TaxId: 63363]

Probab=98.65  E-value=3.9e-09  Score=74.61  Aligned_cols=25  Identities=44%  Similarity=0.515  Sum_probs=22.1

Q ss_pred             EEEEEecCCCcHHHHHHHHHHHhcC
Q 039455           51 FIGICGMGGIGKTTLAKVLYNTLKD   75 (216)
Q Consensus        51 ~i~I~G~~GiGKTtL~~~~~~~~~~   75 (216)
                      .|+|+||+|+|||||++.+++.+..
T Consensus         2 ki~I~G~~G~GKSTLl~~i~~~l~~   26 (178)
T d1ye8a1           2 KIIITGEPGVGKTTLVKKIVERLGK   26 (178)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHHGG
T ss_pred             EEEEECCCCcHHHHHHHHHHhcCCC
Confidence            3899999999999999999987653

>d1g6ha_ c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: MJ1267
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=98.63  E-value=1.6e-08  Score=75.64  Aligned_cols=55  Identities=11%  Similarity=0.075  Sum_probs=38.1

Q ss_pred             hhHHHHHHHhCCceEEEEEeCCCC------HHHHHHhhcCCCCCCCCcEEEEEeCCchhhhcc
Q 039455          119 KGINLIRWRLCRKRVLVVLDDVDQ------LEQLQALAGNHDWFGFGSRIIITTRDEHVLKGH  175 (216)
Q Consensus       119 ~~~~~l~~~l~~~~~llvlDd~~~------~~~~~~l~~~~~~~~~~~~il~tsr~~~~~~~~  175 (216)
                      ...-.+.+++..+|-+|++|+.-.      ..++..++..+.  ..|..||++||+.+.+..+
T Consensus       156 ~Qrv~iAraL~~~P~llilDEPt~gLD~~~~~~i~~~i~~l~--~~g~til~vsHdl~~~~~~  216 (254)
T d1g6ha_         156 MKLVEIGRALMTNPKMIVMDEPIAGVAPGLAHDIFNHVLELK--AKGITFLIIEHRLDIVLNY  216 (254)
T ss_dssp             HHHHHHHHHHHTCCSEEEEESTTTTCCHHHHHHHHHHHHHHH--HTTCEEEEECSCCSTTGGG
T ss_pred             HHHHHHHHHHHhCcCchhhcCCcccCCHHHHHHHHHHHHHHH--HCCCEEEEEeCcHHHHHHh
Confidence            344467888889999999998732      233444443333  3578999999998776665

>d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter MsbA, C-terminal domain {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Multidrug resistance ABC transporter MsbA, C-terminal domain
species: Salmonella typhimurium [TaxId: 90371]

Probab=98.61  E-value=6.8e-09  Score=77.65  Aligned_cols=63  Identities=14%  Similarity=0.157  Sum_probs=40.1

Q ss_pred             hhhhHHHHHHHhCCceEEEEEeCCCCH------HHHHHhhcCCCCCCCCcEEEEEeCCchhhhccCCcceEEec
Q 039455          117 VHKGINLIRWRLCRKRVLVVLDDVDQL------EQLQALAGNHDWFGFGSRIIITTRDEHVLKGHGVTNIYKVR  184 (216)
Q Consensus       117 ~~~~~~~l~~~l~~~~~llvlDd~~~~------~~~~~l~~~~~~~~~~~~il~tsr~~~~~~~~~~~~~~~l~  184 (216)
                      .+...-.+++.+..++-++++|+.-+.      ..+...+..+   ..+.++|++||+...+..  ++.++.++
T Consensus       156 GqkQRvaiARal~~~p~ililDEpts~LD~~~~~~i~~~l~~l---~~~~Tvi~itH~l~~~~~--~D~v~vl~  224 (253)
T d3b60a1         156 GQRQRIAIARALLRDSPILILDEATSALDTESERAIQAALDEL---QKNRTSLVIAHRLSTIEQ--ADEIVVVE  224 (253)
T ss_dssp             HHHHHHHHHHHHHHCCSEEEEETTTSSCCHHHHHHHHHHHHHH---HTTSEEEEECSCGGGTTT--CSEEEEEE
T ss_pred             HHHHHHHHHHHHhcCCCEEEeccccccCCHHHHHHHHHHHHHh---ccCCEEEEEECCHHHHHh--CCEEEEEE
Confidence            344455678888888899999988422      2233333222   236789999999877654  55555554

>d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Haemolysin B ATP-binding protein
species: Escherichia coli [TaxId: 562]

Probab=98.58  E-value=4e-08  Score=72.80  Aligned_cols=63  Identities=13%  Similarity=0.136  Sum_probs=40.3

Q ss_pred             hhhhHHHHHHHhCCceEEEEEeCCCCH------HHHHHhhcCCCCCCCCcEEEEEeCCchhhhccCCcceEEec
Q 039455          117 VHKGINLIRWRLCRKRVLVVLDDVDQL------EQLQALAGNHDWFGFGSRIIITTRDEHVLKGHGVTNIYKVR  184 (216)
Q Consensus       117 ~~~~~~~l~~~l~~~~~llvlDd~~~~------~~~~~l~~~~~~~~~~~~il~tsr~~~~~~~~~~~~~~~l~  184 (216)
                      .+...-.+.+.+..++-++++|++-+.      ..+...+..+   .++.++|++||+.+.+..  ++.++.++
T Consensus       143 Gq~QRvalARal~~~p~ililDEpts~LD~~~~~~i~~~l~~l---~~~~Tvi~itH~l~~~~~--~D~i~vl~  211 (241)
T d2pmka1         143 GQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMRNMHKI---CKGRTVIIIAHRLSTVKN--ADRIIVME  211 (241)
T ss_dssp             HHHHHHHHHHHHTTCCSEEEECCCCSCCCHHHHHHHHHHHHHH---HTTSEEEEECSSGGGGTT--SSEEEEEE
T ss_pred             HHHHHHhhhhhhhcccchhhhhCCccccCHHHHHHHHHHHHHH---hCCCEEEEEECCHHHHHh--CCEEEEEE
Confidence            344555688899999999999988422      2222222222   246789999998877654  45544443

>d2onka1 c.37.1.12 (A:1-240) Molybdate/tungstate import ATP-binding protein WtpC (ModC) {Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Molybdate/tungstate import ATP-binding protein WtpC (ModC)
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=98.56  E-value=5e-09  Score=77.31  Aligned_cols=58  Identities=16%  Similarity=-0.013  Sum_probs=37.9

Q ss_pred             hhhhHHHHHHHhCCceEEEEEeCCCC------HHHHHHhhcCCCCCCCCcEEEEEeCCchhhhcc
Q 039455          117 VHKGINLIRWRLCRKRVLVVLDDVDQ------LEQLQALAGNHDWFGFGSRIIITTRDEHVLKGH  175 (216)
Q Consensus       117 ~~~~~~~l~~~l~~~~~llvlDd~~~------~~~~~~l~~~~~~~~~~~~il~tsr~~~~~~~~  175 (216)
                      .+.....+.+.+..+|-+|++|+.-+      ...+..++..+.. ..+..+|++||+...+..+
T Consensus       130 G~kQRvaiAral~~~P~illlDEPts~LD~~~~~~i~~~i~~l~~-~~g~tvi~vtHd~~~~~~~  193 (240)
T d2onka1         130 GERQRVALARALVIQPRLLLLDEPLSAVDLKTKGVLMEELRFVQR-EFDVPILHVTHDLIEAAML  193 (240)
T ss_dssp             HHHHHHHHHHHHTTCCSSBEEESTTSSCCHHHHHHHHHHHHHHHH-HHTCCEEEEESCHHHHHHH
T ss_pred             HHHHHHHHHHHHhccCCceEecCccccCCHHHHHHHHHHHHHHHH-hcCCeEEEEeCCHHHHHHh
Confidence            34445578999999999999998732      1233333322210 1367899999998766654

>d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Peptide transporter Tap1, C-terminal ABC domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.56  E-value=1.7e-07  Score=69.80  Aligned_cols=65  Identities=15%  Similarity=0.226  Sum_probs=41.8

Q ss_pred             hhhhHHHHHHHhCCceEEEEEeCCCCH------HHHHHhhcCCCCCCCCcEEEEEeCCchhhhccCCcceEEec
Q 039455          117 VHKGINLIRWRLCRKRVLVVLDDVDQL------EQLQALAGNHDWFGFGSRIIITTRDEHVLKGHGVTNIYKVR  184 (216)
Q Consensus       117 ~~~~~~~l~~~l~~~~~llvlDd~~~~------~~~~~l~~~~~~~~~~~~il~tsr~~~~~~~~~~~~~~~l~  184 (216)
                      .+...-.+.+.+-.++-++++|+.-+.      ..+..++..+.. ..+.++|++||+...+..  ++..+.++
T Consensus       155 GqkQRvaiARal~~~p~ililDEpTs~LD~~~~~~i~~~l~~l~~-~~~~Tvi~itH~l~~~~~--aDrI~vl~  225 (251)
T d1jj7a_         155 GQRQAVALARALIRKPCVLILDDATSALDANSQLQVEQLLYESPE-RYSRSVLLITQHLSLVEQ--ADHILFLE  225 (251)
T ss_dssp             HHHHHHHHHHHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHTCGG-GGGCEEEEECSCHHHHHT--CSEEEEEE
T ss_pred             hHceEEEEeeccccCCcEEEecCcCcccChhhHHHHHHHHHHHhh-hcCCEEEEEeCCHHHHHh--CCEEEEEE
Confidence            445566789999999999999988422      233444433321 236789999999877654  45544443

>d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA, C-terminal domain {Lactococcus lactis [TaxId: 1358]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Multidrug resistance ABC transporter LmrA, C-terminal domain
species: Lactococcus lactis [TaxId: 1358]

Probab=98.53  E-value=1.4e-07  Score=69.94  Aligned_cols=62  Identities=13%  Similarity=0.177  Sum_probs=40.5

Q ss_pred             hhhHHHHHHHhCCceEEEEEeCCC------CHHHHHHhhcCCCCCCCCcEEEEEeCCchhhhccCCcceEEec
Q 039455          118 HKGINLIRWRLCRKRVLVVLDDVD------QLEQLQALAGNHDWFGFGSRIIITTRDEHVLKGHGVTNIYKVR  184 (216)
Q Consensus       118 ~~~~~~l~~~l~~~~~llvlDd~~------~~~~~~~l~~~~~~~~~~~~il~tsr~~~~~~~~~~~~~~~l~  184 (216)
                      +...-.+++.+-.++-+|++|+.-      ....+...+..+.   .+.++|++||+.+.+..  +++.+.+.
T Consensus       144 qkQRv~iARal~~~p~ililDEpts~LD~~~~~~i~~~l~~l~---~~~Tvi~itH~l~~~~~--~D~i~vl~  211 (242)
T d1mv5a_         144 QRQRLAIARAFLRNPKILMLDEATASLDSESESMVQKALDSLM---KGRTTLVIAHRLSTIVD--ADKIYFIE  211 (242)
T ss_dssp             HHHHHHHHHHHHHCCSEEEEECCSCSSCSSSCCHHHHHHHHHH---TTSEEEEECCSHHHHHH--CSEEEEEE
T ss_pred             HHHHHHHHHHHhcCCCEEEecCCccccCHHHHHHHHHHHHHHc---CCCEEEEEECCHHHHHh--CCEEEEEE
Confidence            444556888888899999999773      2233333333322   36789999999877654  45555553

>d1ny5a2 c.37.1.20 (A:138-384) Transcriptional activator sigm54 (NtrC1), C-terminal domain {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Transcriptional activator sigm54 (NtrC1), C-terminal domain
species: Aquifex aeolicus [TaxId: 63363]

Probab=98.53  E-value=3.7e-07  Score=67.85  Aligned_cols=47  Identities=17%  Similarity=0.152  Sum_probs=38.5

Q ss_pred             ccccchhHHHHHHHHHhcCCCCeeEEEEEecCCCcHHHHHHHHHHHh
Q 039455           27 GLVGIASRMEKMNGYLEAGLDDVRFIGICGMGGIGKTTLAKVLYNTL   73 (216)
Q Consensus        27 ~~vgR~~~~~~l~~~l~~~~~~~~~i~I~G~~GiGKTtL~~~~~~~~   73 (216)
                      +|||.+..++.+.+.+..-......|.|+|+.|+|||++|+.+....
T Consensus         1 ~~v~~S~~~~~~~~~~~~~a~~~~pvlI~Ge~GtGK~~~A~~ih~~s   47 (247)
T d1ny5a2           1 EYVFESPKMKEILEKIKKISCAECPVLITGESGVGKEVVARLIHKLS   47 (247)
T ss_dssp             CCCCCSHHHHHHHHHHHHHTTCCSCEEEECSTTSSHHHHHHHHHHHS
T ss_pred             CeEecCHHHHHHHHHHHHHhCCCCCEEEECCCCcCHHHHHHHHHHhc
Confidence            58999999999988776543444678999999999999999997643

>d1l7vc_ c.37.1.12 (C:) ABC transporter involved in vitamin B12 uptake, BtuD {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: ABC transporter involved in vitamin B12 uptake, BtuD
species: Escherichia coli [TaxId: 562]

Probab=98.51  E-value=2e-08  Score=74.11  Aligned_cols=25  Identities=24%  Similarity=0.361  Sum_probs=22.7

Q ss_pred             CeeEEEEEecCCCcHHHHHHHHHHH
Q 039455           48 DVRFIGICGMGGIGKTTLAKVLYNT   72 (216)
Q Consensus        48 ~~~~i~I~G~~GiGKTtL~~~~~~~   72 (216)
                      .+.+++|.|++|+|||||++.+++.
T Consensus        24 ~Gei~~iiG~nGaGKSTLl~~l~Gl   48 (231)
T d1l7vc_          24 AGEILHLVGPNGAGKSTLLARMAGM   48 (231)
T ss_dssp             TTCEEECBCCTTSSHHHHHHHHHTS
T ss_pred             CCCEEEEECCCCCcHHHHHHHHhCC
Confidence            4689999999999999999999873

>d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895 {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative ABC transporter PF0895
species: Pyrococcus furiosus [TaxId: 2261]

Probab=98.50  E-value=8e-08  Score=69.25  Aligned_cols=27  Identities=41%  Similarity=0.538  Sum_probs=23.9

Q ss_pred             CeeEEEEEecCCCcHHHHHHHHHHHhc
Q 039455           48 DVRFIGICGMGGIGKTTLAKVLYNTLK   74 (216)
Q Consensus        48 ~~~~i~I~G~~GiGKTtL~~~~~~~~~   74 (216)
                      .+.+++|.||+|+|||||++.+++.++
T Consensus        26 ~Gei~~l~G~NGsGKSTLl~~i~gl~~   52 (200)
T d1sgwa_          26 KGNVVNFHGPNGIGKTTLLKTISTYLK   52 (200)
T ss_dssp             TTCCEEEECCTTSSHHHHHHHHTTSSC
T ss_pred             CCCEEEEECCCCChHHHHHHHHhcccc
Confidence            457999999999999999999998554

>d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative multidrug export ATP-binding/permease protein SAV1866
species: Staphylococcus aureus [TaxId: 1280]

Probab=98.46  E-value=1.5e-08  Score=75.64  Aligned_cols=61  Identities=11%  Similarity=0.097  Sum_probs=38.4

Q ss_pred             hhhHHHHHHHhCCceEEEEEeCCCCH------HHHHHhhcCCCCCCCCcEEEEEeCCchhhhccCCcceEEe
Q 039455          118 HKGINLIRWRLCRKRVLVVLDDVDQL------EQLQALAGNHDWFGFGSRIIITTRDEHVLKGHGVTNIYKV  183 (216)
Q Consensus       118 ~~~~~~l~~~l~~~~~llvlDd~~~~------~~~~~l~~~~~~~~~~~~il~tsr~~~~~~~~~~~~~~~l  183 (216)
                      +...-.+++.+-.++-++|||+.-+.      ..+...+..+   .++.++|++||+.+.+..  ++.++.+
T Consensus       159 q~QRi~iARal~~~p~ililDEpts~LD~~t~~~i~~~l~~l---~~~~TvI~itH~~~~~~~--~D~ii~l  225 (255)
T d2hyda1         159 QKQRLSIARIFLNNPPILILDEATSALDLESESIIQEALDVL---SKDRTTLIVAHRLSTITH--ADKIVVI  225 (255)
T ss_dssp             HHHHHHHHHHHHHCCSEEEEESTTTTCCHHHHHHHHHHHHHH---TTTSEEEEECSSGGGTTT--CSEEEEE
T ss_pred             HHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHH---hcCCEEEEEeCCHHHHHh--CCEEEEE
Confidence            34445678888888889999988432      2223332222   245688889998877654  4555544

>d2gnoa2 c.37.1.20 (A:11-208) gamma subunit of DNA polymerase III, N-domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: gamma subunit of DNA polymerase III, N-domain
species: Thermotoga maritima [TaxId: 2336]

Probab=98.46  E-value=8.9e-07  Score=63.53  Aligned_cols=132  Identities=14%  Similarity=0.022  Sum_probs=74.9

Q ss_pred             hHHHHHHHHHhcCCCCeeEEEEEecCCCcHHHHHHHHHHHhcCC---CCceEeeccccccccccCchHHHHHHHHHHHhh
Q 039455           33 SRMEKMNGYLEAGLDDVRFIGICGMGGIGKTTLAKVLYNTLKDQ---FEASSFLANVREVSVTRGLVPLQEQLLSEVLME  109 (216)
Q Consensus        33 ~~~~~l~~~l~~~~~~~~~i~I~G~~GiGKTtL~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  109 (216)
                      ++++.+.+++..+  ....+.++|++|+|||++|..++..+...   .+.+.++..-+.   .-.. +..+.+...+...
T Consensus         1 ~~~~~l~~~i~~~--~~~~~l~~G~~g~gk~~~a~~l~~~i~~~~~~h~D~~~i~~~~~---~I~I-d~IR~i~~~~~~~   74 (198)
T d2gnoa2           1 DQLETLKRIIEKS--EGISILINGEDLSYPREVSLELPEYVEKFPPKASDVLEIDPEGE---NIGI-DDIRTIKDFLNYS   74 (198)
T ss_dssp             CHHHHHHHHHHTC--SSEEEEEECSSSSHHHHHHHHHHHHHHTSCCCTTTEEEECCSSS---CBCH-HHHHHHHHHHTSC
T ss_pred             CHHHHHHHHHhcC--CCceEEEECCCCCCHHHHHHHHHHHHhccccCCCCEEEEeCCcC---CCCH-HHHHHHHHHHhhC
Confidence            3567788888754  46899999999999999999999865432   345665541110   1111 1112222221110


Q ss_pred             ccccccchhhhHHHHHHHhCCceEEEEEeCCCCH--HHHHHhhcCCCCCCCCcEEEEEeCCch-hhhcc-CCcceEEecC
Q 039455          110 RNLIIWDVHKGINLIRWRLCRKRVLVVLDDVDQL--EQLQALAGNHDWFGFGSRIIITTRDEH-VLKGH-GVTNIYKVRG  185 (216)
Q Consensus       110 ~~~~~~~~~~~~~~l~~~l~~~~~llvlDd~~~~--~~~~~l~~~~~~~~~~~~il~tsr~~~-~~~~~-~~~~~~~l~~  185 (216)
                                       ...++.-++|+|+++..  +....++..+..-..++.++++|.+.. +...+ .....+.+++
T Consensus        75 -----------------~~~~~~KviIId~ad~l~~~aqNaLLK~LEEPp~~t~fiLit~~~~~ll~TI~SRC~~i~~~~  137 (198)
T d2gnoa2          75 -----------------PELYTRKYVIVHDCERMTQQAANAFLKALEEPPEYAVIVLNTRRWHYLLPTIKSRVFRVVVNV  137 (198)
T ss_dssp             -----------------CSSSSSEEEEETTGGGBCHHHHHHTHHHHHSCCTTEEEEEEESCGGGSCHHHHTTSEEEECCC
T ss_pred             -----------------cccCCCEEEEEeCccccchhhhhHHHHHHhCCCCCceeeeccCChhhCHHHHhcceEEEeCCC
Confidence                             11245569999999854  445555544432245666776666543 33332 1235677765


Q ss_pred             CC
Q 039455          186 LD  187 (216)
Q Consensus       186 l~  187 (216)
                      ..
T Consensus       138 p~  139 (198)
T d2gnoa2         138 PK  139 (198)
T ss_dssp             CH
T ss_pred             ch
Confidence            44

>d1r6bx3 c.37.1.20 (X:437-751) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpA, an Hsp100 chaperone, AAA+ modules
species: Escherichia coli [TaxId: 562]

Probab=98.35  E-value=3.9e-06  Score=64.43  Aligned_cols=50  Identities=20%  Similarity=0.210  Sum_probs=38.0

Q ss_pred             ccccccchhHHHHHHHHHh-------cCCCCeeEEEEEecCCCcHHHHHHHHHHHhc
Q 039455           25 VDGLVGIASRMEKMNGYLE-------AGLDDVRFIGICGMGGIGKTTLAKVLYNTLK   74 (216)
Q Consensus        25 ~~~~vgR~~~~~~l~~~l~-------~~~~~~~~i~I~G~~GiGKTtL~~~~~~~~~   74 (216)
                      ....+|-+..++.+...+.       .......+++++||+|+|||.||+.++..+.
T Consensus        21 ~~~viGQ~~a~~~v~~~v~~~~~~l~~~~~p~~~~lf~Gp~GvGKT~lak~la~~l~   77 (315)
T d1r6bx3          21 KMLVFGQDKAIEALTEAIKMARAGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSKALG   77 (315)
T ss_dssp             TTTSCSCHHHHHHHHHHHHHHHTTCSCTTSCSEEEEEECSTTSSHHHHHHHHHHHHT
T ss_pred             CCeecChHHHHHHHHHHHHHHHccCCCCCCCceEEEEECCCcchhHHHHHHHHhhcc
Confidence            4557999999998866542       1122245789999999999999999998753

>d1ofha_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: HslU
species: Haemophilus influenzae [TaxId: 727]

Probab=98.28  E-value=6.3e-07  Score=68.81  Aligned_cols=49  Identities=22%  Similarity=0.219  Sum_probs=36.3

Q ss_pred             ccccchhHHHHHHHHHhc------------CCCCeeEEEEEecCCCcHHHHHHHHHHHhcC
Q 039455           27 GLVGIASRMEKMNGYLEA------------GLDDVRFIGICGMGGIGKTTLAKVLYNTLKD   75 (216)
Q Consensus        27 ~~vgR~~~~~~l~~~l~~------------~~~~~~~i~I~G~~GiGKTtL~~~~~~~~~~   75 (216)
                      ..+|.++..+.+...+..            .....+.++++||+|+|||.||+.+++.+..
T Consensus        15 ~ViGQd~A~~~l~~av~~~~~r~~~~~~~~~~~~~~~iLl~GPpG~GKT~lAkalA~~~~~   75 (309)
T d1ofha_          15 HIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKLANA   75 (309)
T ss_dssp             TCCSCHHHHHHHHHHHHHHHHTTSSCHHHHHHCCCCCEEEECCTTSSHHHHHHHHHHHHTC
T ss_pred             cccChHHHHHHHHHHHHHHHHHhccCCCCccCCCCceEEEECCCCCCHHHHHHHHhhcccc
Confidence            468999888887654410            0113467889999999999999999987643

>d1qvra3 c.37.1.20 (A:536-850) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpB, AAA+ modules
species: Thermus thermophilus [TaxId: 274]

Probab=98.22  E-value=8.3e-06  Score=62.54  Aligned_cols=50  Identities=28%  Similarity=0.289  Sum_probs=37.1

Q ss_pred             ccccccchhHHHHHHHHHh---c----CCCCeeEEEEEecCCCcHHHHHHHHHHHhc
Q 039455           25 VDGLVGIASRMEKMNGYLE---A----GLDDVRFIGICGMGGIGKTTLAKVLYNTLK   74 (216)
Q Consensus        25 ~~~~vgR~~~~~~l~~~l~---~----~~~~~~~i~I~G~~GiGKTtL~~~~~~~~~   74 (216)
                      ....+|.++.++.+...+.   .    +.....++.++||+|+|||.+|+.++..+-
T Consensus        22 ~~~v~GQ~~ai~~v~~~i~~~~~~l~~~~kp~~~~lf~Gp~G~GKt~lak~la~~l~   78 (315)
T d1qvra3          22 HKRVVGQDEAIRAVADAIRRARAGLKDPNRPIGSFLFLGPTGVGKTELAKTLAATLF   78 (315)
T ss_dssp             HHHSCSCHHHHHHHHHHHHHHGGGCSCSSSCSEEEEEBSCSSSSHHHHHHHHHHHHH
T ss_pred             cCeEeCHHHHHHHHHHHHHHHhcCCCCCCCCceEEEEECCCcchHHHHHHHHHHHhc
Confidence            3457899988888766443   1    111234788999999999999999998763

>d2i3ba1 c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Cancer-related NTPase, C1orf57
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.19  E-value=4.2e-07  Score=63.80  Aligned_cols=28  Identities=36%  Similarity=0.412  Sum_probs=24.3

Q ss_pred             eEEEEEecCCCcHHHHHHHHHHHhcCCC
Q 039455           50 RFIGICGMGGIGKTTLAKVLYNTLKDQF   77 (216)
Q Consensus        50 ~~i~I~G~~GiGKTtL~~~~~~~~~~~~   77 (216)
                      +.|.|+|++|+|||||++.++..+....
T Consensus         2 k~v~ItG~~GtGKTtl~~~i~~~l~~~~   29 (189)
T d2i3ba1           2 RHVFLTGPPGVGKTTLIHKASEVLKSSG   29 (189)
T ss_dssp             CCEEEESCCSSCHHHHHHHHHHHHHHTT
T ss_pred             cEEEEECCCCCcHHHHHHHHHHHHHHCC
Confidence            5799999999999999999999776543

>d1np6a_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB
species: Escherichia coli [TaxId: 562]

Probab=98.13  E-value=9.1e-07  Score=61.30  Aligned_cols=29  Identities=31%  Similarity=0.394  Sum_probs=25.3

Q ss_pred             eeEEEEEecCCCcHHHHHHHHHHHhcCCC
Q 039455           49 VRFIGICGMGGIGKTTLAKVLYNTLKDQF   77 (216)
Q Consensus        49 ~~~i~I~G~~GiGKTtL~~~~~~~~~~~~   77 (216)
                      .++++|+|++|+|||||+++++..+..+.
T Consensus         2 ~Pvi~itG~~GSGKTTL~~~L~~~l~~~g   30 (170)
T d1np6a_           2 IPLLAFAAWSGTGKTTLLKKLIPALCARG   30 (170)
T ss_dssp             CCEEEEECCTTSCHHHHHHHHHHHHHHTT
T ss_pred             CCEEEEEcCCCCCHHHHHHHHHHHHHHCC
Confidence            36899999999999999999999876553

>d1gvnb_ c.37.1.21 (B:) Plasmid maintenance system epsilon/zeta, toxin zeta subunit {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Plasmid maintenance system epsilon/zeta, toxin zeta subunit
domain: Plasmid maintenance system epsilon/zeta, toxin zeta subunit
species: Streptococcus pyogenes [TaxId: 1314]

Probab=98.13  E-value=1.9e-06  Score=64.33  Aligned_cols=31  Identities=19%  Similarity=0.367  Sum_probs=25.9

Q ss_pred             CCCeeEEEEEecCCCcHHHHHHHHHHHhcCC
Q 039455           46 LDDVRFIGICGMGGIGKTTLAKVLYNTLKDQ   76 (216)
Q Consensus        46 ~~~~~~i~I~G~~GiGKTtL~~~~~~~~~~~   76 (216)
                      ...+..|+++||+|+|||+||+.++..+...
T Consensus        29 ~~~P~~ilL~GpPGtGKT~la~~la~~~~~~   59 (273)
T d1gvnb_          29 VESPTAFLLGGQPGSGKTSLRSAIFEETQGN   59 (273)
T ss_dssp             CSSCEEEEEECCTTSCTHHHHHHHHHHTTTC
T ss_pred             CCCCEEEEEECCCCCCHHHHHHHHHHHhhcc
Confidence            3456789999999999999999999977533

>d1rz3a_ c.37.1.6 (A:) Hypothetical protein rbstp0775 {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Hypothetical protein rbstp0775
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=98.12  E-value=2.7e-06  Score=60.32  Aligned_cols=48  Identities=29%  Similarity=0.330  Sum_probs=32.6

Q ss_pred             HHHHHHHHH-hcCCCCeeEEEEEecCCCcHHHHHHHHHHHhcCCCCceE
Q 039455           34 RMEKMNGYL-EAGLDDVRFIGICGMGGIGKTTLAKVLYNTLKDQFEASS   81 (216)
Q Consensus        34 ~~~~l~~~l-~~~~~~~~~i~I~G~~GiGKTtL~~~~~~~~~~~~~~~~   81 (216)
                      .++.|.... .......-+|+|.|++|+||||||+.+...+........
T Consensus         6 ~~~~~~~~~~~~~~~~~~iIgI~G~~GSGKSTla~~L~~~l~~~~~~~~   54 (198)
T d1rz3a_           6 RIDFLCKTILAIKTAGRLVLGIDGLSRSGKTTLANQLSQTLREQGISVC   54 (198)
T ss_dssp             HHHHHHHHHHTSCCSSSEEEEEEECTTSSHHHHHHHHHHHHHHTTCCEE
T ss_pred             HHHHHHHHHHhccCCCCEEEEEECCCCCCHHHHHHHHHHHhccccccce
Confidence            344444433 333344568889999999999999999987665543333

>d1m8pa3 c.37.1.15 (A:391-573) ATP sulfurylase C-terminal domain {Fungus (Penicillium chrysogenum) [TaxId: 5076]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ATP sulfurylase C-terminal domain
domain: ATP sulfurylase C-terminal domain
species: Fungus (Penicillium chrysogenum) [TaxId: 5076]

Probab=98.10  E-value=1.1e-06  Score=61.26  Aligned_cols=30  Identities=30%  Similarity=0.270  Sum_probs=26.0

Q ss_pred             CCeeEEEEEecCCCcHHHHHHHHHHHhcCC
Q 039455           47 DDVRFIGICGMGGIGKTTLAKVLYNTLKDQ   76 (216)
Q Consensus        47 ~~~~~i~I~G~~GiGKTtL~~~~~~~~~~~   76 (216)
                      .++.+|.|+|++|+||||+++.++.++...
T Consensus         4 ~~g~~I~l~G~~GsGKTTia~~La~~L~~~   33 (183)
T d1m8pa3           4 TQGFTIFLTGYMNSGKDAIARALQVTLNQQ   33 (183)
T ss_dssp             TCCEEEEEECSTTSSHHHHHHHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHHhhc
Confidence            456899999999999999999999987543

>d1x6va3 c.37.1.4 (A:34-228) Adenosine-5'phosphosulfate kinase (APS kinase) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Adenosine-5'phosphosulfate kinase (APS kinase)
domain: Adenosine-5'phosphosulfate kinase (APS kinase)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.09  E-value=7.8e-07  Score=63.15  Aligned_cols=36  Identities=25%  Similarity=0.172  Sum_probs=29.5

Q ss_pred             CeeEEEEEecCCCcHHHHHHHHHHHhcCCCCceEee
Q 039455           48 DVRFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFL   83 (216)
Q Consensus        48 ~~~~i~I~G~~GiGKTtL~~~~~~~~~~~~~~~~~~   83 (216)
                      ++.+|.++|++|+||||+|+.++.++...+....++
T Consensus        18 ~g~vI~L~G~pGSGKTTiAk~La~~l~~~~~~~~~~   53 (195)
T d1x6va3          18 RGCTVWLTGLSGAGKTTVSMALEEYLVCHGIPCYTL   53 (195)
T ss_dssp             CCEEEEEESSCHHHHHHHHHHHHHHHHHTTCCEEEE
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHHhcCCCccch
Confidence            567899999999999999999999876655554444

>d1w44a_ c.37.1.11 (A:) NTPase P4 {Bacteriophage phi-12 [TaxId: 161736]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: NTPase P4
species: Bacteriophage phi-12 [TaxId: 161736]

Probab=98.08  E-value=8e-06  Score=62.47  Aligned_cols=28  Identities=29%  Similarity=0.369  Sum_probs=23.6

Q ss_pred             eEEEEEecCCCcHHHHHHHHHHHhcCCC
Q 039455           50 RFIGICGMGGIGKTTLAKVLYNTLKDQF   77 (216)
Q Consensus        50 ~~i~I~G~~GiGKTtL~~~~~~~~~~~~   77 (216)
                      .+++++||+|+|||.||+.+++.+..++
T Consensus       124 g~~l~~G~pG~GKT~la~ala~~~~~~~  151 (321)
T d1w44a_         124 GMVIVTGKGNSGKTPLVHALGEALGGKD  151 (321)
T ss_dssp             EEEEEECSSSSCHHHHHHHHHHHHHTTS
T ss_pred             ceEEEECCCCccHHHHHHHHHHHhcCCC
Confidence            4667799999999999999999876443

>d1kaga_ c.37.1.2 (A:) Shikimate kinase (AroK) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Escherichia coli [TaxId: 562]

Probab=98.08  E-value=8.4e-07  Score=60.95  Aligned_cols=24  Identities=38%  Similarity=0.480  Sum_probs=22.0

Q ss_pred             eEEEEEecCCCcHHHHHHHHHHHh
Q 039455           50 RFIGICGMGGIGKTTLAKVLYNTL   73 (216)
Q Consensus        50 ~~i~I~G~~GiGKTtL~~~~~~~~   73 (216)
                      +.|+|+||+|+||||+++.++.++
T Consensus         3 k~I~l~G~~GsGKSTvak~La~~L   26 (169)
T d1kaga_           3 RNIFLVGPMGAGKSTIGRQLAQQL   26 (169)
T ss_dssp             CCEEEECCTTSCHHHHHHHHHHHT
T ss_pred             CeEEEECCCCCCHHHHHHHHHHHh
Confidence            468899999999999999999876

>d1lw7a2 c.37.1.1 (A:220-411) Transcriptional regulator NadR, ribosylnicotinamide kinase domain {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Transcriptional regulator NadR, ribosylnicotinamide kinase domain
species: Haemophilus influenzae [TaxId: 727]

Probab=98.08  E-value=1e-06  Score=61.77  Aligned_cols=26  Identities=23%  Similarity=0.340  Sum_probs=23.6

Q ss_pred             eeEEEEEecCCCcHHHHHHHHHHHhc
Q 039455           49 VRFIGICGMGGIGKTTLAKVLYNTLK   74 (216)
Q Consensus        49 ~~~i~I~G~~GiGKTtL~~~~~~~~~   74 (216)
                      .+.|+|+|++|+|||||++.++.++.
T Consensus         7 ~K~I~i~G~~GsGKTTla~~La~~~~   32 (192)
T d1lw7a2           7 AKTVAILGGESSGKSVLVNKLAAVFN   32 (192)
T ss_dssp             CEEEEEECCTTSHHHHHHHHHHHHTT
T ss_pred             ceEEEEECCCCCCHHHHHHHHHHHhC
Confidence            47899999999999999999998764

>d2qy9a2 c.37.1.10 (A:285-495) GTPase domain of the signal recognition particle receptor FtsY {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal recognition particle receptor FtsY
species: Escherichia coli [TaxId: 562]

Probab=98.05  E-value=2.4e-05  Score=56.18  Aligned_cols=37  Identities=24%  Similarity=0.272  Sum_probs=28.6

Q ss_pred             CCeeEEEEEecCCCcHHHHHHHHHHHhcCCCCceEee
Q 039455           47 DDVRFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFL   83 (216)
Q Consensus        47 ~~~~~i~I~G~~GiGKTtL~~~~~~~~~~~~~~~~~~   83 (216)
                      ....++.++||+|+||||.+.+++.+++.+-..+..+
T Consensus         7 ~~p~vi~lvGptGvGKTTTiAKLA~~~~~~g~kV~li   43 (211)
T d2qy9a2           7 KAPFVILMVGVNGVGKTTTIGKLARQFEQQGKSVMLA   43 (211)
T ss_dssp             CTTEEEEEECCTTSCHHHHHHHHHHHHHTTTCCEEEE
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEE
Confidence            3457999999999999999999998776544444444

>d1okkd2 c.37.1.10 (D:97-303) GTPase domain of the signal recognition particle receptor FtsY {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal recognition particle receptor FtsY
species: Thermus aquaticus [TaxId: 271]

Probab=98.03  E-value=1.7e-05  Score=56.91  Aligned_cols=38  Identities=26%  Similarity=0.296  Sum_probs=30.0

Q ss_pred             CCeeEEEEEecCCCcHHHHHHHHHHHhcCCCCceEeec
Q 039455           47 DDVRFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLA   84 (216)
Q Consensus        47 ~~~~~i~I~G~~GiGKTtL~~~~~~~~~~~~~~~~~~~   84 (216)
                      +++.++.++||+|+||||.+.+++.++..+-..+.++.
T Consensus         4 ~~~~vi~lvGptGvGKTTTiaKLA~~~~~~g~kV~lit   41 (207)
T d1okkd2           4 PKGRVVLVVGVNGVGKTTTIAKLGRYYQNLGKKVMFCA   41 (207)
T ss_dssp             CSSSEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEEC
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEE
Confidence            45689999999999999999999887765545555553

>d2bdta1 c.37.1.25 (A:1-176) Hypothetical protein BH3686 {Bacillus halodurans [TaxId: 86665]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Atu3015-like
domain: Hypothetical protein BH3686
species: Bacillus halodurans [TaxId: 86665]

Probab=98.02  E-value=1.7e-06  Score=59.99  Aligned_cols=24  Identities=38%  Similarity=0.516  Sum_probs=22.1

Q ss_pred             eEEEEEecCCCcHHHHHHHHHHHh
Q 039455           50 RFIGICGMGGIGKTTLAKVLYNTL   73 (216)
Q Consensus        50 ~~i~I~G~~GiGKTtL~~~~~~~~   73 (216)
                      +.|+|+|++|+||||+|+.++..+
T Consensus         3 klI~i~G~~GsGKTTva~~L~~~~   26 (176)
T d2bdta1           3 KLYIITGPAGVGKSTTCKRLAAQL   26 (176)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHHS
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHc
Confidence            689999999999999999999765

>d1knqa_ c.37.1.17 (A:) Gluconate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Gluconate kinase
domain: Gluconate kinase
species: Escherichia coli [TaxId: 562]

Probab=98.02  E-value=2.1e-06  Score=59.49  Aligned_cols=28  Identities=25%  Similarity=0.426  Sum_probs=25.0

Q ss_pred             CCeeEEEEEecCCCcHHHHHHHHHHHhc
Q 039455           47 DDVRFIGICGMGGIGKTTLAKVLYNTLK   74 (216)
Q Consensus        47 ~~~~~i~I~G~~GiGKTtL~~~~~~~~~   74 (216)
                      .+.++++|+|++|+||||+++.++.++.
T Consensus         4 ~~~~iivl~G~~GsGKsT~a~~La~~l~   31 (171)
T d1knqa_           4 HDHHIYVLMGVSGSGKSAVASEVAHQLH   31 (171)
T ss_dssp             TTSEEEEEECSTTSCHHHHHHHHHHHHT
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHhC
Confidence            4568999999999999999999998763

>d1rkba_ c.37.1.1 (A:) Adenylate kinase {Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]

Probab=98.00  E-value=1.6e-06  Score=60.13  Aligned_cols=25  Identities=40%  Similarity=0.430  Sum_probs=22.0

Q ss_pred             eEEEEEecCCCcHHHHHHHHHHHhc
Q 039455           50 RFIGICGMGGIGKTTLAKVLYNTLK   74 (216)
Q Consensus        50 ~~i~I~G~~GiGKTtL~~~~~~~~~   74 (216)
                      +.|+|+|++|+||||+++.++.++.
T Consensus         5 ~~I~i~G~pGsGKTTia~~La~~l~   29 (173)
T d1rkba_           5 PNILLTGTPGVGKTTLGKELASKSG   29 (173)
T ss_dssp             CCEEEECSTTSSHHHHHHHHHHHHC
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHHC
Confidence            4578999999999999999998763

>d1vmaa2 c.37.1.10 (A:82-294) GTPase domain of the signal recognition particle receptor FtsY {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal recognition particle receptor FtsY
species: Thermotoga maritima [TaxId: 2336]

Probab=98.00  E-value=1.1e-05  Score=58.25  Aligned_cols=39  Identities=26%  Similarity=0.261  Sum_probs=29.9

Q ss_pred             CCCeeEEEEEecCCCcHHHHHHHHHHHhcCCCCceEeec
Q 039455           46 LDDVRFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLA   84 (216)
Q Consensus        46 ~~~~~~i~I~G~~GiGKTtL~~~~~~~~~~~~~~~~~~~   84 (216)
                      ...+.++.++||+|+||||.+.+++.++..+...+..+.
T Consensus         8 ~~~p~vi~lvGptGvGKTTTiAKLAa~~~~~~~kV~lit   46 (213)
T d1vmaa2           8 PEPPFVIMVVGVNGTGKTTSCGKLAKMFVDEGKSVVLAA   46 (213)
T ss_dssp             SSSCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred             CCCCEEEEEECCCCCCHHHHHHHHHHHHHHCCCceEEEe
Confidence            345679999999999999998898887765544555553

>d1ly1a_ c.37.1.1 (A:) Polynucleotide kinase, kinase domain {Bacteriophage T4 [TaxId: 10665]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Polynucleotide kinase, kinase domain
species: Bacteriophage T4 [TaxId: 10665]

Probab=97.99  E-value=2e-06  Score=58.47  Aligned_cols=23  Identities=30%  Similarity=0.405  Sum_probs=20.5

Q ss_pred             eEEEEEecCCCcHHHHHHHHHHH
Q 039455           50 RFIGICGMGGIGKTTLAKVLYNT   72 (216)
Q Consensus        50 ~~i~I~G~~GiGKTtL~~~~~~~   72 (216)
                      .+|+|+|++|+||||+|+.+...
T Consensus         3 klIii~G~pGsGKTTla~~L~~~   25 (152)
T d1ly1a_           3 KIILTIGCPGSGKSTWAREFIAK   25 (152)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHH
T ss_pred             EEEEEECCCCCCHHHHHHHHHHh
Confidence            57899999999999999988654

>d1y63a_ c.37.1.1 (A:) Probable kinase LmjF30.1890 {Leishmania major [TaxId: 5664]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Probable kinase LmjF30.1890
species: Leishmania major [TaxId: 5664]

Probab=97.99  E-value=2.1e-06  Score=59.68  Aligned_cols=27  Identities=33%  Similarity=0.378  Sum_probs=24.0

Q ss_pred             CCeeEEEEEecCCCcHHHHHHHHHHHh
Q 039455           47 DDVRFIGICGMGGIGKTTLAKVLYNTL   73 (216)
Q Consensus        47 ~~~~~i~I~G~~GiGKTtL~~~~~~~~   73 (216)
                      +++..|+|+|++|+||||+++.++.++
T Consensus         3 pk~~~I~i~G~~GsGKTT~~~~La~~l   29 (174)
T d1y63a_           3 PKGINILITGTPGTGKTSMAEMIAAEL   29 (174)
T ss_dssp             CSSCEEEEECSTTSSHHHHHHHHHHHS
T ss_pred             CCCCEEEEEeCCCCCHHHHHHHHHHHh
Confidence            456789999999999999999999875

>d1qhxa_ c.37.1.3 (A:) Chloramphenicol phosphotransferase {Streptomyces venezuelae [TaxId: 54571]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Chloramphenicol phosphotransferase
domain: Chloramphenicol phosphotransferase
species: Streptomyces venezuelae [TaxId: 54571]

Probab=97.97  E-value=2.2e-06  Score=59.56  Aligned_cols=26  Identities=27%  Similarity=0.415  Sum_probs=23.5

Q ss_pred             eeEEEEEecCCCcHHHHHHHHHHHhc
Q 039455           49 VRFIGICGMGGIGKTTLAKVLYNTLK   74 (216)
Q Consensus        49 ~~~i~I~G~~GiGKTtL~~~~~~~~~   74 (216)
                      .++|+|+|++|+||||+++.++.++.
T Consensus         3 ~kiI~l~G~~GsGKsTva~~L~~~l~   28 (178)
T d1qhxa_           3 TRMIILNGGSSAGKSGIVRCLQSVLP   28 (178)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHHHSS
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHcC
Confidence            47899999999999999999998764

>d1j8yf2 c.37.1.10 (F:87-297) GTPase domain of the signal sequence recognition protein Ffh {Archaeon Acidianus ambivalens [TaxId: 2283]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal sequence recognition protein Ffh
species: Archaeon Acidianus ambivalens [TaxId: 2283]

Probab=97.94  E-value=2.1e-05  Score=56.55  Aligned_cols=37  Identities=24%  Similarity=0.164  Sum_probs=24.6

Q ss_pred             CCeeEEEEEecCCCcHHHHHHHHHHHhcCCCCceEee
Q 039455           47 DDVRFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFL   83 (216)
Q Consensus        47 ~~~~~i~I~G~~GiGKTtL~~~~~~~~~~~~~~~~~~   83 (216)
                      ..+.++.++||+|+||||.+.+++.+++.+-..+..+
T Consensus        10 k~p~vi~lvGptGvGKTTTiAKLA~~~~~~g~kV~li   46 (211)
T d1j8yf2          10 KIPYVIMLVGVQGTGKATTAGKLAYFYKKKGFKVGLV   46 (211)
T ss_dssp             SSSEEEEEECSCCC----HHHHHHHHHHHTTCCEEEE
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHHHHHHCCCceEEE
Confidence            3568899999999999999988888776543444444

>d1qf9a_ c.37.1.1 (A:) UMP/CMP kinase {Dictyostelium discoideum [TaxId: 44689]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: UMP/CMP kinase
species: Dictyostelium discoideum [TaxId: 44689]

Probab=97.94  E-value=3.6e-06  Score=59.79  Aligned_cols=27  Identities=19%  Similarity=0.210  Sum_probs=24.2

Q ss_pred             CCeeEEEEEecCCCcHHHHHHHHHHHh
Q 039455           47 DDVRFIGICGMGGIGKTTLAKVLYNTL   73 (216)
Q Consensus        47 ~~~~~i~I~G~~GiGKTtL~~~~~~~~   73 (216)
                      +++.+|+|.||+|+||||+++.++..+
T Consensus         4 ~kp~iI~i~G~pGSGKsT~a~~La~~~   30 (194)
T d1qf9a_           4 SKPNVVFVLGGPGSGKGTQCANIVRDF   30 (194)
T ss_dssp             CCCEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence            456899999999999999999999875

>d1khta_ c.37.1.1 (A:) Adenylate kinase {Archaeon Methanococcus voltae [TaxId: 2188]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Archaeon Methanococcus voltae [TaxId: 2188]

Probab=97.92  E-value=4.3e-06  Score=58.53  Aligned_cols=29  Identities=21%  Similarity=0.445  Sum_probs=25.5

Q ss_pred             eEEEEEecCCCcHHHHHHHHHHHhcCCCC
Q 039455           50 RFIGICGMGGIGKTTLAKVLYNTLKDQFE   78 (216)
Q Consensus        50 ~~i~I~G~~GiGKTtL~~~~~~~~~~~~~   78 (216)
                      ++|+|.|++|+||||+++.++.++.....
T Consensus         2 kiI~i~G~~GsGKsT~~~~L~~~l~~~~~   30 (190)
T d1khta_           2 KVVVVTGVPGVGSTTSSQLAMDNLRKEGV   30 (190)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHHHHHTTTC
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHHHHcCC
Confidence            68999999999999999999998765543

>d1zp6a1 c.37.1.25 (A:6-181) Hypothetical protein Atu3015 {Agrobacterium tumefaciens [TaxId: 358]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Atu3015-like
domain: Hypothetical protein Atu3015
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=97.91  E-value=2.7e-06  Score=59.18  Aligned_cols=26  Identities=31%  Similarity=0.388  Sum_probs=22.8

Q ss_pred             CeeEEEEEecCCCcHHHHHHHHHHHh
Q 039455           48 DVRFIGICGMGGIGKTTLAKVLYNTL   73 (216)
Q Consensus        48 ~~~~i~I~G~~GiGKTtL~~~~~~~~   73 (216)
                      .+++|+|.|++|+||||+++.++.++
T Consensus         3 ~g~iI~l~G~~GsGKSTia~~La~~l   28 (176)
T d1zp6a1           3 GGNILLLSGHPGSGKSTIAEALANLP   28 (176)
T ss_dssp             TTEEEEEEECTTSCHHHHHHHHHTCS
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence            35899999999999999999997654

>d1ukza_ c.37.1.1 (A:) Uridylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Uridylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.88  E-value=4.7e-06  Score=59.32  Aligned_cols=27  Identities=33%  Similarity=0.370  Sum_probs=24.5

Q ss_pred             CCeeEEEEEecCCCcHHHHHHHHHHHh
Q 039455           47 DDVRFIGICGMGGIGKTTLAKVLYNTL   73 (216)
Q Consensus        47 ~~~~~i~I~G~~GiGKTtL~~~~~~~~   73 (216)
                      ++.++|+|.||+|+||||+|+.+++++
T Consensus         6 ~~~~iI~i~GppGSGKsT~a~~La~~~   32 (196)
T d1ukza_           6 DQVSVIFVLGGPGAGKGTQCEKLVKDY   32 (196)
T ss_dssp             TTCEEEEEECSTTSSHHHHHHHHHHHS
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHHHHh
Confidence            457899999999999999999999865

>d1ls1a2 c.37.1.10 (A:89-295) GTPase domain of the signal sequence recognition protein Ffh {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal sequence recognition protein Ffh
species: Thermus aquaticus [TaxId: 271]

Probab=97.86  E-value=2.3e-05  Score=56.23  Aligned_cols=37  Identities=27%  Similarity=0.242  Sum_probs=28.6

Q ss_pred             CCeeEEEEEecCCCcHHHHHHHHHHHhcCCCCceEee
Q 039455           47 DDVRFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFL   83 (216)
Q Consensus        47 ~~~~~i~I~G~~GiGKTtL~~~~~~~~~~~~~~~~~~   83 (216)
                      .+..++.++||+|+||||.+.+++.++..+...+..+
T Consensus         8 ~~~~vi~lvGp~GvGKTTTiaKLA~~~~~~g~kV~li   44 (207)
T d1ls1a2           8 KDRNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLV   44 (207)
T ss_dssp             CSSEEEEEECCTTTTHHHHHHHHHHHHHHTTCCEEEE
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEE
Confidence            3457899999999999999999988776554444444

>d1xjca_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=97.83  E-value=7.4e-06  Score=56.64  Aligned_cols=33  Identities=18%  Similarity=0.048  Sum_probs=26.7

Q ss_pred             eEEEEEecCCCcHHHHHHHHHHHhcCCCCceEe
Q 039455           50 RFIGICGMGGIGKTTLAKVLYNTLKDQFEASSF   82 (216)
Q Consensus        50 ~~i~I~G~~GiGKTtL~~~~~~~~~~~~~~~~~   82 (216)
                      ++++|+|.+|+|||||+..++.+++.+...+..
T Consensus         2 kii~I~G~~gSGKTTli~~l~~~L~~~g~~v~v   34 (165)
T d1xjca_           2 NVWQVVGYKHSGKTTLMEKWVAAAVREGWRVGT   34 (165)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEE
T ss_pred             cEEEEEeCCCCCHHHHHHHHHHHHHhCCCeEEE
Confidence            478999999999999999999987765433333

>d2iyva1 c.37.1.2 (A:2-166) Shikimate kinase (AroK) {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=97.82  E-value=4.1e-06  Score=58.04  Aligned_cols=24  Identities=29%  Similarity=0.444  Sum_probs=21.1

Q ss_pred             EEEEEecCCCcHHHHHHHHHHHhc
Q 039455           51 FIGICGMGGIGKTTLAKVLYNTLK   74 (216)
Q Consensus        51 ~i~I~G~~GiGKTtL~~~~~~~~~   74 (216)
                      .|+++|++|+||||+++.++.++.
T Consensus         3 ~IvliG~~G~GKSTig~~La~~l~   26 (165)
T d2iyva1           3 KAVLVGLPGSGKSTIGRRLAKALG   26 (165)
T ss_dssp             SEEEECSTTSSHHHHHHHHHHHHT
T ss_pred             cEEEECCCCCCHHHHHHHHHHHhC
Confidence            466779999999999999998874

>d1mo6a1 c.37.1.11 (A:1-269) RecA protein, ATPase-domain {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: RecA protein, ATPase-domain
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=97.81  E-value=3.1e-05  Score=57.79  Aligned_cols=96  Identities=18%  Similarity=0.169  Sum_probs=59.1

Q ss_pred             HHHHHHh-cCCCCeeEEEEEecCCCcHHHHHHHHHHHhcCCCCceEeeccccccccccCchHHHHHHHHHHHhhcc----
Q 039455           37 KMNGYLE-AGLDDVRFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLANVREVSVTRGLVPLQEQLLSEVLMERN----  111 (216)
Q Consensus        37 ~l~~~l~-~~~~~~~~i~I~G~~GiGKTtL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~----  111 (216)
                      .|...|. .+-+.++++-|.|++|+|||+|+..++...+..-..++|++.-...    +.     +.+..+....+    
T Consensus        47 ~lD~~lg~gG~~~g~i~e~~G~~~~GKT~l~l~~~~~~q~~g~~~vyIDtE~~~----~~-----e~a~~~GvD~d~il~  117 (269)
T d1mo6a1          47 ALDVALGIGGLPRGRVIEIYGPESSGKTTVALHAVANAQAAGGVAAFIDAEHAL----DP-----DYAKKLGVDTDSLLV  117 (269)
T ss_dssp             HHHHHTSSSSBCSSSEEEEECSSSSSHHHHHHHHHHHHHHTTCEEEEEESSCCC----CH-----HHHHHHTCCGGGCEE
T ss_pred             HHHHhhccCCcccceeEEEecCCCcHHHHHHHHHHHHHhcCCCEEEEEECCccC----CH-----HHHHHhCCCHHHeEE
Confidence            4555553 5556789999999999999999999888766666778888632221    11     12333322211    


Q ss_pred             ccccchhhhHHHHHHHhC-CceEEEEEeCCC
Q 039455          112 LIIWDVHKGINLIRWRLC-RKRVLVVLDDVD  141 (216)
Q Consensus       112 ~~~~~~~~~~~~l~~~l~-~~~~llvlDd~~  141 (216)
                      ......+...+.+..++. +...+||+|.+.
T Consensus       118 ~~~~~~E~~~~~~~~l~~~~~~~liIiDSi~  148 (269)
T d1mo6a1         118 SQPDTGEQALEIADMLIRSGALDIVVIDSVA  148 (269)
T ss_dssp             ECCSSHHHHHHHHHHHHHTTCEEEEEEECST
T ss_pred             ecCCCHHHHHHHHHHHHhcCCCCEEEEeccc
Confidence            122334444444444444 457799999773

>d1e6ca_ c.37.1.2 (A:) Shikimate kinase (AroK) {Erwinia chrysanthemi [TaxId: 556]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Erwinia chrysanthemi [TaxId: 556]

Probab=97.81  E-value=4.5e-06  Score=58.09  Aligned_cols=25  Identities=32%  Similarity=0.364  Sum_probs=22.0

Q ss_pred             eEEEEEecCCCcHHHHHHHHHHHhc
Q 039455           50 RFIGICGMGGIGKTTLAKVLYNTLK   74 (216)
Q Consensus        50 ~~i~I~G~~GiGKTtL~~~~~~~~~   74 (216)
                      ..|+|+|++|+||||+++.++.++.
T Consensus         3 ~~Iil~G~~GsGKSTia~~LA~~Lg   27 (170)
T d1e6ca_           3 EPIFMVGARGCGMTTVGRELARALG   27 (170)
T ss_dssp             CCEEEESCTTSSHHHHHHHHHHHHT
T ss_pred             CCEEEECCCCCCHHHHHHHHHHHhC
Confidence            4577899999999999999998764

>d1nksa_ c.37.1.1 (A:) Adenylate kinase {Archaeon Sulfolobus acidocaldarius [TaxId: 2285]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Archaeon Sulfolobus acidocaldarius [TaxId: 2285]

Probab=97.81  E-value=1.1e-05  Score=56.58  Aligned_cols=34  Identities=21%  Similarity=0.323  Sum_probs=27.0

Q ss_pred             eEEEEEecCCCcHHHHHHHHHHHhcCCCCceEee
Q 039455           50 RFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFL   83 (216)
Q Consensus        50 ~~i~I~G~~GiGKTtL~~~~~~~~~~~~~~~~~~   83 (216)
                      ++|+|.|++|+||||+++.++.++......+..+
T Consensus         2 kiivi~G~~GsGKTT~~~~La~~L~~~~~~~~~~   35 (194)
T d1nksa_           2 KIGIVTGIPGVGKSTVLAKVKEILDNQGINNKII   35 (194)
T ss_dssp             EEEEEEECTTSCHHHHHHHHHHHHHTTTCCEEEE
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEE
Confidence            5789999999999999999999887554333333

>d2qm8a1 c.37.1.10 (A:5-327) Metallochaperone MeaB {Methylobacterium extorquens [TaxId: 408]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Metallochaperone MeaB
species: Methylobacterium extorquens [TaxId: 408]

Probab=97.77  E-value=2.6e-05  Score=59.84  Aligned_cols=41  Identities=22%  Similarity=0.302  Sum_probs=31.3

Q ss_pred             HHHHHHHHhcCCCCeeEEEEEecCCCcHHHHHHHHHHHhcC
Q 039455           35 MEKMNGYLEAGLDDVRFIGICGMGGIGKTTLAKVLYNTLKD   75 (216)
Q Consensus        35 ~~~l~~~l~~~~~~~~~i~I~G~~GiGKTtL~~~~~~~~~~   75 (216)
                      ...+.+.+.....+..+|+|+|++|+|||||+..+...+..
T Consensus        37 ~~~~~~~~~~~~~~~~~igitG~pGaGKSTli~~l~~~~~~   77 (323)
T d2qm8a1          37 VRDLIDAVLPQTGRAIRVGITGVPGVGKSTTIDALGSLLTA   77 (323)
T ss_dssp             HHHHHHHHGGGCCCSEEEEEECCTTSCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhhhccCCceEEeeeCCCCCCHHHHHHHHHHHHhh
Confidence            34444444444567789999999999999999999986543

>d1p9ra_ c.37.1.11 (A:) Extracellular secretion NTPase EpsE {Vibrio cholerae [TaxId: 666]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Extracellular secretion NTPase EpsE
species: Vibrio cholerae [TaxId: 666]

Probab=97.76  E-value=0.00013  Score=57.53  Aligned_cols=122  Identities=13%  Similarity=0.085  Sum_probs=67.6

Q ss_pred             ccch-hHHHHHHHHHhcCCCCeeEEEEEecCCCcHHHHHHHHHHHhcCCCCceEeeccccccccccCchHHHHHHHHHHH
Q 039455           29 VGIA-SRMEKMNGYLEAGLDDVRFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLANVREVSVTRGLVPLQEQLLSEVL  107 (216)
Q Consensus        29 vgR~-~~~~~l~~~l~~~~~~~~~i~I~G~~GiGKTtL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~  107 (216)
                      .|-. ..++.+.+++...   ...|+|+||.|+||||++..+...+......+.=+   .+.. +..+....        
T Consensus       140 LG~~~~~~~~l~~l~~~~---~GliLvtGpTGSGKSTTl~~~l~~~~~~~~~i~ti---EdPi-E~~~~~~~--------  204 (401)
T d1p9ra_         140 LGMTAHNHDNFRRLIKRP---HGIILVTGPTGSGKSTTLYAGLQELNSSERNILTV---EDPI-EFDIDGIG--------  204 (401)
T ss_dssp             SCCCHHHHHHHHHHHTSS---SEEEEEECSTTSCHHHHHHHHHHHHCCTTSCEEEE---ESSC-CSCCSSSE--------
T ss_pred             hcccHHHHHHHHHHHhhh---hceEEEEcCCCCCccHHHHHHhhhhcCCCceEEEe---ccCc-ccccCCCC--------
Confidence            4444 4555666666543   48999999999999999999998765432222211   1110 11110000        


Q ss_pred             hhccccccchhhhHHHHHHHhCCceEEEEEeCCCCHHHHHHhhcCCCCCCCCcEEEEEeCCc
Q 039455          108 MERNLIIWDVHKGINLIRWRLCRKRVLVVLDDVDQLEQLQALAGNHDWFGFGSRIIITTRDE  169 (216)
Q Consensus       108 ~~~~~~~~~~~~~~~~l~~~l~~~~~llvlDd~~~~~~~~~l~~~~~~~~~~~~il~tsr~~  169 (216)
                       ...............++..++..|-+|++.++...+.....+..-   ..|-.++-|-|..
T Consensus       205 -q~~v~~~~~~~~~~~l~~~lR~dPDvi~igEiRd~~ta~~a~~aa---~tGhlV~tTlHa~  262 (401)
T d1p9ra_         205 -QTQVNPRVDMTFARGLRAILRQDPDVVMVGEIRDLETAQIAVQAS---LTGHLVMSTLHTN  262 (401)
T ss_dssp             -EEECBGGGTBCHHHHHHHHGGGCCSEEEESCCCSHHHHHHHHHHH---HTTCEEEEEECCS
T ss_pred             -eeeecCCcCCCHHHHHHHHHhhcCCEEEecCcCChHHHHHHHHHH---hcCCeEEEEeccC
Confidence             000011112234566777888888899999997765544433221   1345555555543

>d2p67a1 c.37.1.10 (A:1-327) LAO/AO transport system kinase ArgK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: LAO/AO transport system kinase ArgK
species: Escherichia coli [TaxId: 562]

Probab=97.76  E-value=2.8e-05  Score=59.78  Aligned_cols=41  Identities=17%  Similarity=0.225  Sum_probs=31.5

Q ss_pred             HHHHHHHhcCCCCeeEEEEEecCCCcHHHHHHHHHHHhcCC
Q 039455           36 EKMNGYLEAGLDDVRFIGICGMGGIGKTTLAKVLYNTLKDQ   76 (216)
Q Consensus        36 ~~l~~~l~~~~~~~~~i~I~G~~GiGKTtL~~~~~~~~~~~   76 (216)
                      .++...+.....+..+|+|+|++|+|||||+..+...+...
T Consensus        41 ~~ll~~~~~~~~~~~~IgitG~pGaGKSTLi~~l~~~~~~~   81 (327)
T d2p67a1          41 TQLLDAIMPYCGNTLRLGVTGTPGAGKSTFLEAFGMLLIRE   81 (327)
T ss_dssp             HHHHHHHGGGCSCSEEEEEEECTTSCHHHHHHHHHHHHHHT
T ss_pred             HHHHHHhhhccCCceEEEeeCCCCCCHHHHHHHHHHHHHhc
Confidence            34444444445678999999999999999999998866544

>d1viaa_ c.37.1.2 (A:) Shikimate kinase (AroK) {Campylobacter jejuni [TaxId: 197]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Campylobacter jejuni [TaxId: 197]

Probab=97.76  E-value=7.7e-06  Score=56.42  Aligned_cols=23  Identities=43%  Similarity=0.531  Sum_probs=21.0

Q ss_pred             EEEEEecCCCcHHHHHHHHHHHh
Q 039455           51 FIGICGMGGIGKTTLAKVLYNTL   73 (216)
Q Consensus        51 ~i~I~G~~GiGKTtL~~~~~~~~   73 (216)
                      .|+|+|++|+||||+++.++.++
T Consensus         2 ~I~liG~~GsGKsTi~k~La~~l   24 (161)
T d1viaa_           2 NIVFIGFMGSGKSTLARALAKDL   24 (161)
T ss_dssp             CEEEECCTTSCHHHHHHHHHHHH
T ss_pred             cEEEECCCCCCHHHHHHHHHHHh
Confidence            37888999999999999999987

>d1tf7a2 c.37.1.11 (A:256-497) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Circadian clock protein KaiC
species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]

Probab=97.75  E-value=1.5e-05  Score=58.39  Aligned_cols=47  Identities=21%  Similarity=0.222  Sum_probs=37.9

Q ss_pred             HHHHHhcCCCCeeEEEEEecCCCcHHHHHHHHHHHhcCCCCceEeec
Q 039455           38 MNGYLEAGLDDVRFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLA   84 (216)
Q Consensus        38 l~~~l~~~~~~~~~i~I~G~~GiGKTtL~~~~~~~~~~~~~~~~~~~   84 (216)
                      |.+.|..+-+.+.++.|+|++|+|||+|+.+++.....+...+.|++
T Consensus        15 LD~~l~GGi~~gsl~li~G~pGsGKT~l~~qia~~~~~~~~~~~~is   61 (242)
T d1tf7a2          15 LDEMCGGGFFKDSIILATGATGTGKTLLVSRFVENACANKERAILFA   61 (242)
T ss_dssp             HHHHTTSSEESSCEEEEEECTTSSHHHHHHHHHHHHHTTTCCEEEEE
T ss_pred             HHHhhcCCCcCCeEEEEEeCCCCCHHHHHHHHHHHHHHhccccceee
Confidence            45555555456789999999999999999999998777777777775

>d1u94a1 c.37.1.11 (A:6-268) RecA protein, ATPase-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: RecA protein, ATPase-domain
species: Escherichia coli [TaxId: 562]

Probab=97.73  E-value=2e-05  Score=58.75  Aligned_cols=49  Identities=24%  Similarity=0.308  Sum_probs=38.2

Q ss_pred             HHHHHHh-cCCCCeeEEEEEecCCCcHHHHHHHHHHHhcCCCCceEeecc
Q 039455           37 KMNGYLE-AGLDDVRFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLAN   85 (216)
Q Consensus        37 ~l~~~l~-~~~~~~~~i~I~G~~GiGKTtL~~~~~~~~~~~~~~~~~~~~   85 (216)
                      .|...|. .+-+.+.++-|+|++|+|||+|+.+++...+..-..++|++.
T Consensus        41 ~lD~~Lg~GGi~~g~itei~G~~gsGKTtl~l~~~~~~q~~g~~~vyidt   90 (263)
T d1u94a1          41 SLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDA   90 (263)
T ss_dssp             HHHHHTSSSSEETTSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEES
T ss_pred             HHHHHhcCCCccCceEEEEecCCCcHHHHHHHHHHHHHHcCCCEEEEEcc
Confidence            4555554 444566899999999999999999999877766677888863

>d1wb9a2 c.37.1.12 (A:567-800) DNA repair protein MutS, the C-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: DNA repair protein MutS, the C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=97.72  E-value=3.9e-05  Score=56.08  Aligned_cols=24  Identities=25%  Similarity=0.160  Sum_probs=21.6

Q ss_pred             CeeEEEEEecCCCcHHHHHHHHHH
Q 039455           48 DVRFIGICGMGGIGKTTLAKVLYN   71 (216)
Q Consensus        48 ~~~~i~I~G~~GiGKTtL~~~~~~   71 (216)
                      +.+.++|+||+..||||+++.++.
T Consensus        40 ~~~~~iiTGpN~~GKSt~lk~i~l   63 (234)
T d1wb9a2          40 QRRMLIITGPNMGGKSTYMRQTAL   63 (234)
T ss_dssp             SSCEEEEECCTTSSHHHHHHHHHH
T ss_pred             CceEEEEeccCchhhHHHHHHHHH
Confidence            347899999999999999999986

>d1zaka1 c.37.1.1 (A:3-127,A:159-222) Adenylate kinase {Maize (Zea mays) [TaxId: 4577]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Maize (Zea mays) [TaxId: 4577]

Probab=97.71  E-value=9.8e-06  Score=57.27  Aligned_cols=25  Identities=20%  Similarity=0.186  Sum_probs=22.3

Q ss_pred             eeEEEEEecCCCcHHHHHHHHHHHh
Q 039455           49 VRFIGICGMGGIGKTTLAKVLYNTL   73 (216)
Q Consensus        49 ~~~i~I~G~~GiGKTtL~~~~~~~~   73 (216)
                      +..|+|.||+|+||||+++.+++++
T Consensus         3 Pm~I~i~GppGsGKsT~a~~La~~~   27 (189)
T d1zaka1           3 PLKVMISGAPASGKGTQCELIKTKY   27 (189)
T ss_dssp             SCCEEEEESTTSSHHHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHH
Confidence            4568999999999999999998876

>d1yj5a2 c.37.1.1 (A:351-522) 5' polynucleotide kinase-3' phosphatase, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: 5' polynucleotide kinase-3' phosphatase, C-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.70  E-value=9.9e-06  Score=56.53  Aligned_cols=26  Identities=19%  Similarity=0.304  Sum_probs=22.4

Q ss_pred             CCeeEEEEEecCCCcHHHHHHHHHHH
Q 039455           47 DDVRFIGICGMGGIGKTTLAKVLYNT   72 (216)
Q Consensus        47 ~~~~~i~I~G~~GiGKTtL~~~~~~~   72 (216)
                      +...+|+++|++|+||||+++.++..
T Consensus        12 ~~p~liil~G~pGsGKST~a~~l~~~   37 (172)
T d1yj5a2          12 PNPEVVVAVGFPGAGKSTFIQEHLVS   37 (172)
T ss_dssp             SSCCEEEEECCTTSSHHHHHHHHTGG
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHHh
Confidence            45679999999999999999988653

>d1bifa1 c.37.1.7 (A:37-249) 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain
domain: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.70  E-value=1.6e-05  Score=56.78  Aligned_cols=27  Identities=30%  Similarity=0.317  Sum_probs=23.5

Q ss_pred             eEEEEEecCCCcHHHHHHHHHHHhcCC
Q 039455           50 RFIGICGMGGIGKTTLAKVLYNTLKDQ   76 (216)
Q Consensus        50 ~~i~I~G~~GiGKTtL~~~~~~~~~~~   76 (216)
                      .+|+++|.+|+||||+|++++..+...
T Consensus         3 ~li~l~GlpgsGKSTla~~L~~~l~~~   29 (213)
T d1bifa1           3 TLIVMVGLPARGKTYISKKLTRYLNFI   29 (213)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHHHHHT
T ss_pred             EEEEEECCCCCCHHHHHHHHHHHHHhc
Confidence            579999999999999999999866543

>d1teva_ c.37.1.1 (A:) UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: UMP/CMP kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.70  E-value=1.2e-05  Score=56.86  Aligned_cols=24  Identities=21%  Similarity=0.211  Sum_probs=22.3

Q ss_pred             eEEEEEecCCCcHHHHHHHHHHHh
Q 039455           50 RFIGICGMGGIGKTTLAKVLYNTL   73 (216)
Q Consensus        50 ~~i~I~G~~GiGKTtL~~~~~~~~   73 (216)
                      .+|+|.||+|+||||+|+.++..+
T Consensus         2 ~iI~i~GppGSGKsT~a~~La~~~   25 (194)
T d1teva_           2 LVVFVLGGPGAGKGTQCARIVEKY   25 (194)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHHHHHh
Confidence            689999999999999999999875

>d1gkya_ c.37.1.1 (A:) Guanylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.68  E-value=8.1e-06  Score=57.69  Aligned_cols=28  Identities=46%  Similarity=0.648  Sum_probs=23.3

Q ss_pred             eEEEEEecCCCcHHHHHHHHHHHhcCCC
Q 039455           50 RFIGICGMGGIGKTTLAKVLYNTLKDQF   77 (216)
Q Consensus        50 ~~i~I~G~~GiGKTtL~~~~~~~~~~~~   77 (216)
                      +.|+|+||+|+|||||++.++.+....+
T Consensus         2 rpIvl~GpsG~GK~tl~~~L~~~~~~~~   29 (186)
T d1gkya_           2 RPIVISGPSGTGKSTLLKKLFAEYPDSF   29 (186)
T ss_dssp             CCEEEECCTTSSHHHHHHHHHHHCTTTE
T ss_pred             CeEEEECCCCCCHHHHHHHHHHhCCcce
Confidence            4589999999999999999988754433

>d1znwa1 c.37.1.1 (A:20-201) Guanylate kinase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=97.66  E-value=1.3e-05  Score=56.30  Aligned_cols=25  Identities=24%  Similarity=0.488  Sum_probs=22.4

Q ss_pred             eeEEEEEecCCCcHHHHHHHHHHHh
Q 039455           49 VRFIGICGMGGIGKTTLAKVLYNTL   73 (216)
Q Consensus        49 ~~~i~I~G~~GiGKTtL~~~~~~~~   73 (216)
                      +.+|+|+||+|+|||||++.+..+.
T Consensus         2 G~iivl~GpsG~GK~tl~~~L~~~~   26 (182)
T d1znwa1           2 GRVVVLSGPSAVGKSTVVRCLRERI   26 (182)
T ss_dssp             CCEEEEECSTTSSHHHHHHHHHHHS
T ss_pred             CeEEEEECCCCCCHHHHHHHHHhhC
Confidence            4689999999999999999998765

>d1ckea_ c.37.1.1 (A:) CMP kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: CMP kinase
species: Escherichia coli [TaxId: 562]

Probab=97.66  E-value=1.3e-05  Score=57.74  Aligned_cols=26  Identities=38%  Similarity=0.514  Sum_probs=23.4

Q ss_pred             eeEEEEEecCCCcHHHHHHHHHHHhc
Q 039455           49 VRFIGICGMGGIGKTTLAKVLYNTLK   74 (216)
Q Consensus        49 ~~~i~I~G~~GiGKTtL~~~~~~~~~   74 (216)
                      .++|+|.||+|+||||+++.+++++.
T Consensus         3 ~piI~I~GppGSGKgT~ak~La~~~g   28 (225)
T d1ckea_           3 APVITIDGPSGAGKGTLCKAMAEALQ   28 (225)
T ss_dssp             SCEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHHhC
Confidence            36999999999999999999998763

>d1ak2a1 c.37.1.1 (A:14-146,A:177-233) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]

Probab=97.66  E-value=1.6e-05  Score=56.13  Aligned_cols=25  Identities=28%  Similarity=0.161  Sum_probs=21.5

Q ss_pred             eeEEEEEecCCCcHHHHHHHHHHHh
Q 039455           49 VRFIGICGMGGIGKTTLAKVLYNTL   73 (216)
Q Consensus        49 ~~~i~I~G~~GiGKTtL~~~~~~~~   73 (216)
                      +..|+|.||+|+||||+++.++.++
T Consensus         3 ~~riil~G~pGSGKsT~a~~La~~~   27 (190)
T d1ak2a1           3 GVRAVLLGPPGAGKGTQAPKLAKNF   27 (190)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             ccEEEEECCCCCCHHHHHHHHHHHh
Confidence            3466688999999999999999875

>d1svma_ c.37.1.20 (A:) Papillomavirus large T antigen helicase domain {Simian virus 40 [TaxId: 10633]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Papillomavirus large T antigen helicase domain
species: Simian virus 40 [TaxId: 10633]

Probab=97.65  E-value=2.9e-05  Score=60.52  Aligned_cols=32  Identities=28%  Similarity=0.220  Sum_probs=27.5

Q ss_pred             cCCCCeeEEEEEecCCCcHHHHHHHHHHHhcC
Q 039455           44 AGLDDVRFIGICGMGGIGKTTLAKVLYNTLKD   75 (216)
Q Consensus        44 ~~~~~~~~i~I~G~~GiGKTtL~~~~~~~~~~   75 (216)
                      .+.++.+.++++||+|+|||+++..++..+..
T Consensus       149 ~~~~~~~~~~~~g~~~~gk~~~~~~~~~~~~~  180 (362)
T d1svma_         149 YNIPKKRYWLFKGPIDSGKTTLAAALLELCGG  180 (362)
T ss_dssp             HCCTTCCEEEEECSTTSSHHHHHHHHHHHHCC
T ss_pred             hCCCCcCeEEEECCCCCCHHHHHHHHHHHcCC
Confidence            34567789999999999999999999998753

>d3adka_ c.37.1.1 (A:) Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=97.65  E-value=1.6e-05  Score=56.44  Aligned_cols=26  Identities=23%  Similarity=0.303  Sum_probs=23.2

Q ss_pred             CeeEEEEEecCCCcHHHHHHHHHHHh
Q 039455           48 DVRFIGICGMGGIGKTTLAKVLYNTL   73 (216)
Q Consensus        48 ~~~~i~I~G~~GiGKTtL~~~~~~~~   73 (216)
                      +.++|+|.||+|+||||+++.++.++
T Consensus         7 ~~~iI~l~G~pGSGKsT~a~~La~~~   32 (194)
T d3adka_           7 KSKIIFVVGGPGSGKGTQCEKIVQKY   32 (194)
T ss_dssp             TSCEEEEEECTTSSHHHHHHHHHHHT
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHHh
Confidence            34799999999999999999999864

>d1m7ga_ c.37.1.4 (A:) Adenosine-5'phosphosulfate kinase (APS kinase) {Fungus (Penicillium chrysogenum) [TaxId: 5076]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Adenosine-5'phosphosulfate kinase (APS kinase)
domain: Adenosine-5'phosphosulfate kinase (APS kinase)
species: Fungus (Penicillium chrysogenum) [TaxId: 5076]

Probab=97.62  E-value=2.1e-05  Score=56.51  Aligned_cols=28  Identities=32%  Similarity=0.300  Sum_probs=25.0

Q ss_pred             CCeeEEEEEecCCCcHHHHHHHHHHHhc
Q 039455           47 DDVRFIGICGMGGIGKTTLAKVLYNTLK   74 (216)
Q Consensus        47 ~~~~~i~I~G~~GiGKTtL~~~~~~~~~   74 (216)
                      .++.+|.++|.+|+|||||++.+..++.
T Consensus        22 ~kg~vIwltGlsGsGKTTia~~L~~~l~   49 (208)
T d1m7ga_          22 QRGLTIWLTGLSASGKSTLAVELEHQLV   49 (208)
T ss_dssp             SSCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence            5678999999999999999999998664

>d1zina1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=97.62  E-value=1.6e-05  Score=55.55  Aligned_cols=23  Identities=26%  Similarity=0.369  Sum_probs=20.9

Q ss_pred             EEEEEecCCCcHHHHHHHHHHHh
Q 039455           51 FIGICGMGGIGKTTLAKVLYNTL   73 (216)
Q Consensus        51 ~i~I~G~~GiGKTtL~~~~~~~~   73 (216)
                      .|+|.|++|+||||+++.++.++
T Consensus         2 ~I~i~G~pGSGKsT~a~~La~~~   24 (182)
T d1zina1           2 NLVLMGLPGAGKGTQAEKIVAAY   24 (182)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHH
Confidence            37899999999999999999876

>d1xp8a1 c.37.1.11 (A:15-282) RecA protein, ATPase-domain {Deinococcus radiodurans [TaxId: 1299]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: RecA protein, ATPase-domain
species: Deinococcus radiodurans [TaxId: 1299]

Probab=97.61  E-value=5.9e-05  Score=56.22  Aligned_cols=95  Identities=17%  Similarity=0.166  Sum_probs=58.6

Q ss_pred             HHHHHHh-cCCCCeeEEEEEecCCCcHHHHHHHHHHHhcCCCCceEeeccccccccccCchHHHHHHHHHHHhhcc----
Q 039455           37 KMNGYLE-AGLDDVRFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLANVREVSVTRGLVPLQEQLLSEVLMERN----  111 (216)
Q Consensus        37 ~l~~~l~-~~~~~~~~i~I~G~~GiGKTtL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~----  111 (216)
                      .|...|. .+-+.++++-|+|++|+|||+|+..++...+..-..++|++.-...    +.     .++..+....+    
T Consensus        44 ~lD~~Lg~GGip~g~itei~G~~~sGKT~l~l~~~~~aqk~g~~v~yiDtE~~~----~~-----~~a~~~Gvd~d~i~~  114 (268)
T d1xp8a1          44 SLDLALGVGGIPRGRITEIYGPESGGKTTLALAIVAQAQKAGGTCAFIDAEHAL----DP-----VYARALGVNTDELLV  114 (268)
T ss_dssp             HHHHHTSSSSEETTSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCC----CH-----HHHHHTTCCGGGCEE
T ss_pred             HHHHHhcCCCccCceEEEEecCCccchHHHHHHHHHHHHhCCCEEEEEECCccC----CH-----HHHHHhCCCchhEEE
Confidence            4444553 3335678999999999999999999998776665678888632221    11     23333322211    


Q ss_pred             ccccchhhhHHHHHHHhCC-ceEEEEEeCC
Q 039455          112 LIIWDVHKGINLIRWRLCR-KRVLVVLDDV  140 (216)
Q Consensus       112 ~~~~~~~~~~~~l~~~l~~-~~~llvlDd~  140 (216)
                      .+..+.+...+.+..++.+ ...+||+|-+
T Consensus       115 ~~~~~~E~~~~~~~~l~~~~~~~liIiDSi  144 (268)
T d1xp8a1         115 SQPDNGEQALEIMELLVRSGAIDVVVVDSV  144 (268)
T ss_dssp             ECCSSHHHHHHHHHHHHTTTCCSEEEEECT
T ss_pred             EcCCCHHHHHHHHHHHHhcCCCcEEEEecc
Confidence            2233445555555555554 4669999965

>d1lvga_ c.37.1.1 (A:) Guanylate kinase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.61  E-value=1.4e-05  Score=56.63  Aligned_cols=26  Identities=31%  Similarity=0.436  Sum_probs=22.1

Q ss_pred             EEEEEecCCCcHHHHHHHHHHHhcCC
Q 039455           51 FIGICGMGGIGKTTLAKVLYNTLKDQ   76 (216)
Q Consensus        51 ~i~I~G~~GiGKTtL~~~~~~~~~~~   76 (216)
                      .|+|+||+|+|||||++.++......
T Consensus         2 pIvl~GPsGsGK~tl~~~L~~~~~~~   27 (190)
T d1lvga_           2 PVVLSGPSGAGKSTLLKKLFQEHSSI   27 (190)
T ss_dssp             CEEEECCTTSSHHHHHHHHHHHHTTT
T ss_pred             eEEEECCCCCCHHHHHHHHHHhCCCc
Confidence            47899999999999999998875443

>d1kgda_ c.37.1.1 (A:) Guanylate kinase-like domain of Cask {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase-like domain of Cask
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.60  E-value=1.6e-05  Score=55.78  Aligned_cols=28  Identities=21%  Similarity=0.502  Sum_probs=23.5

Q ss_pred             eEEEEEecCCCcHHHHHHHHHHHhcCCC
Q 039455           50 RFIGICGMGGIGKTTLAKVLYNTLKDQF   77 (216)
Q Consensus        50 ~~i~I~G~~GiGKTtL~~~~~~~~~~~~   77 (216)
                      +.|+|+||+|+|||||++.+..+....|
T Consensus         4 k~ivl~Gpsg~GK~tl~~~L~~~~~~~~   31 (178)
T d1kgda_           4 KTLVLLGAHGVGRRHIKNTLITKHPDRF   31 (178)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHHCTTTE
T ss_pred             CcEEEECCCCCCHHHHHHHHHHhCCcCe
Confidence            6799999999999999999987654443

>d1nn5a_ c.37.1.1 (A:) Thymidylate kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.57  E-value=0.00013  Score=52.24  Aligned_cols=35  Identities=20%  Similarity=0.212  Sum_probs=27.9

Q ss_pred             CeeEEEEEecCCCcHHHHHHHHHHHhcCCCCceEe
Q 039455           48 DVRFIGICGMGGIGKTTLAKVLYNTLKDQFEASSF   82 (216)
Q Consensus        48 ~~~~i~I~G~~GiGKTtL~~~~~~~~~~~~~~~~~   82 (216)
                      .+..|+|.|+.|+||||+++.+.+.+..+...+.+
T Consensus         2 rG~lI~ieG~dGsGKsT~~~~L~~~L~~~g~~v~~   36 (209)
T d1nn5a_           2 RGALIVLEGVDRAGKSTQSRKLVEALCAAGHRAEL   36 (209)
T ss_dssp             CCCEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEE
T ss_pred             CeeEEEEECCCCCCHHHHHHHHHHHHHHCCCcEEE
Confidence            35789999999999999999999987665444443

>d1uj2a_ c.37.1.6 (A:) Uridine-cytidine kinase 2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Uridine-cytidine kinase 2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.57  E-value=2.6e-05  Score=56.01  Aligned_cols=27  Identities=22%  Similarity=0.364  Sum_probs=23.4

Q ss_pred             eeEEEEEecCCCcHHHHHHHHHHHhcC
Q 039455           49 VRFIGICGMGGIGKTTLAKVLYNTLKD   75 (216)
Q Consensus        49 ~~~i~I~G~~GiGKTtL~~~~~~~~~~   75 (216)
                      +-+|+|.|++|+||||+++.+...+..
T Consensus         2 P~iIgI~G~~gSGKSTla~~L~~~l~~   28 (213)
T d1uj2a_           2 PFLIGVSGGTASGKSSVCAKIVQLLGQ   28 (213)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHHHHTTG
T ss_pred             CEEEEEECCCCCCHHHHHHHHHHHhch
Confidence            358999999999999999999987643

>d2cdna1 c.37.1.1 (A:1-181) Adenylate kinase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=97.55  E-value=2.2e-05  Score=54.91  Aligned_cols=23  Identities=35%  Similarity=0.300  Sum_probs=21.1

Q ss_pred             EEEEEecCCCcHHHHHHHHHHHh
Q 039455           51 FIGICGMGGIGKTTLAKVLYNTL   73 (216)
Q Consensus        51 ~i~I~G~~GiGKTtL~~~~~~~~   73 (216)
                      .|+|.|++|+||||+++.+++.+
T Consensus         2 ~I~i~G~pGsGKsT~a~~La~~~   24 (181)
T d2cdna1           2 RVLLLGPPGAGKGTQAVKLAEKL   24 (181)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHH
Confidence            47899999999999999999876

>d1sq5a_ c.37.1.6 (A:) Pantothenate kinase PanK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Pantothenate kinase PanK
species: Escherichia coli [TaxId: 562]

Probab=97.55  E-value=0.00029  Score=53.39  Aligned_cols=30  Identities=33%  Similarity=0.340  Sum_probs=25.8

Q ss_pred             CCeeEEEEEecCCCcHHHHHHHHHHHhcCC
Q 039455           47 DDVRFIGICGMGGIGKTTLAKVLYNTLKDQ   76 (216)
Q Consensus        47 ~~~~~i~I~G~~GiGKTtL~~~~~~~~~~~   76 (216)
                      ..+-+|+|.|++|+||||+++.+...+...
T Consensus        78 k~P~iIGIaG~sgSGKSTla~~L~~lL~~~  107 (308)
T d1sq5a_          78 RIPYIISIAGSVAVGKSTTARVLQALLSRW  107 (308)
T ss_dssp             CCCEEEEEEECTTSSHHHHHHHHHHHHTTS
T ss_pred             CCCEEEEEeCCCCCCCcHHHHHHHHHHhhh
Confidence            445799999999999999999999877644

>d1s3ga1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus globisporus [TaxId: 1459]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Bacillus globisporus [TaxId: 1459]

Probab=97.54  E-value=2.4e-05  Score=54.80  Aligned_cols=23  Identities=30%  Similarity=0.382  Sum_probs=21.0

Q ss_pred             EEEEEecCCCcHHHHHHHHHHHh
Q 039455           51 FIGICGMGGIGKTTLAKVLYNTL   73 (216)
Q Consensus        51 ~i~I~G~~GiGKTtL~~~~~~~~   73 (216)
                      .|+|.|++|+||||+++.++.++
T Consensus         2 ~I~i~G~pGSGKsT~a~~La~~~   24 (182)
T d1s3ga1           2 NIVLMGLPGAGKGTQADRIVEKY   24 (182)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHH
Confidence            47899999999999999999876

>d1ewqa2 c.37.1.12 (A:542-765) DNA repair protein MutS, the C-terminal domain {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: DNA repair protein MutS, the C-terminal domain
species: Thermus aquaticus [TaxId: 271]

Probab=97.54  E-value=6.6e-05  Score=54.45  Aligned_cols=22  Identities=23%  Similarity=0.217  Sum_probs=20.2

Q ss_pred             eEEEEEecCCCcHHHHHHHHHH
Q 039455           50 RFIGICGMGGIGKTTLAKVLYN   71 (216)
Q Consensus        50 ~~i~I~G~~GiGKTtL~~~~~~   71 (216)
                      .+++|+||+..||||+++.++-
T Consensus        36 ~~~iiTGpN~~GKSt~lk~i~l   57 (224)
T d1ewqa2          36 ELVLITGPNMAGKSTFLRQTAL   57 (224)
T ss_dssp             CEEEEESCSSSSHHHHHHHHHH
T ss_pred             cEEEEECCCccccchhhhhhHH
Confidence            4789999999999999999875

>d1g6oa_ c.37.1.11 (A:) Hexameric traffic ATPase, HP0525 {Helicobacter pylori [TaxId: 210]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Hexameric traffic ATPase, HP0525
species: Helicobacter pylori [TaxId: 210]

Probab=97.54  E-value=0.00028  Score=53.96  Aligned_cols=105  Identities=14%  Similarity=0.137  Sum_probs=60.2

Q ss_pred             eEEEEEecCCCcHHHHHHHHHHHhcCCCCceEeeccccccccccCchHHHHHHHHHHHhhccccccchhhhHHHHHHHhC
Q 039455           50 RFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLANVREVSVTRGLVPLQEQLLSEVLMERNLIIWDVHKGINLIRWRLC  129 (216)
Q Consensus        50 ~~i~I~G~~GiGKTtL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~  129 (216)
                      ..++|+|+.|+||||+++.++..+.... .++-+-+......... ..           .........-.....+...+.
T Consensus       167 ~nili~G~tgSGKTT~l~al~~~i~~~~-rivtiEd~~El~l~~~-~~-----------~~~~~~~~~~~~~~ll~~~lR  233 (323)
T d1g6oa_         167 KNVIVCGGTGSGKTTYIKSIMEFIPKEE-RIISIEDTEEIVFKHH-KN-----------YTQLFFGGNITSADCLKSCLR  233 (323)
T ss_dssp             CCEEEEESTTSSHHHHHHHHGGGSCTTC-CEEEEESSCCCCCSSC-SS-----------EEEEECBTTBCHHHHHHHHTT
T ss_pred             CCEEEEeeccccchHHHHHHhhhccccc-ceeeccchhhhhcccc-cc-----------cceeccccchhHHHHHHHHhc
Confidence            4689999999999999999988664332 2222222211110000 00           000000111133456777888


Q ss_pred             CceEEEEEeCCCCHHHHHHhhcCCCCCCCCc-EEEEEeCCchh
Q 039455          130 RKRVLVVLDDVDQLEQLQALAGNHDWFGFGS-RIIITTRDEHV  171 (216)
Q Consensus       130 ~~~~llvlDd~~~~~~~~~l~~~~~~~~~~~-~il~tsr~~~~  171 (216)
                      ..+-.+++.++...+.+..+ ....   .|. -.+.|.|..+.
T Consensus       234 ~~pd~iivgEiR~~ea~~~l-~a~~---tGh~g~~tT~Ha~s~  272 (323)
T d1g6oa_         234 MRPDRIILGELRSSEAYDFY-NVLC---SGHKGTLTTLHAGSS  272 (323)
T ss_dssp             SCCSEEEESCCCSTHHHHHH-HHHH---TTCSCEEEEECCSSH
T ss_pred             cCCCcccCCccCchhHHHHH-HHHH---hcCCcEEEEECCCCH
Confidence            89999999999887766543 3332   232 27788887654

>d1q3ta_ c.37.1.1 (A:) CMP kinase {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: CMP kinase
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=97.53  E-value=2.6e-05  Score=56.25  Aligned_cols=25  Identities=32%  Similarity=0.404  Sum_probs=22.1

Q ss_pred             eEEEEEecCCCcHHHHHHHHHHHhc
Q 039455           50 RFIGICGMGGIGKTTLAKVLYNTLK   74 (216)
Q Consensus        50 ~~i~I~G~~GiGKTtL~~~~~~~~~   74 (216)
                      -+|+|.||+|+||||+|+.++.++.
T Consensus         4 i~IaIdGp~GsGKgT~ak~La~~lg   28 (223)
T d1q3ta_           4 IQIAIDGPASSGKSTVAKIIAKDFG   28 (223)
T ss_dssp             CEEEEECSSCSSHHHHHHHHHHHHC
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHhC
Confidence            4688999999999999999998763

>d1s96a_ c.37.1.1 (A:) Guanylate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Escherichia coli [TaxId: 562]

Probab=97.52  E-value=2.9e-05  Score=55.68  Aligned_cols=25  Identities=24%  Similarity=0.323  Sum_probs=22.6

Q ss_pred             eeEEEEEecCCCcHHHHHHHHHHHh
Q 039455           49 VRFIGICGMGGIGKTTLAKVLYNTL   73 (216)
Q Consensus        49 ~~~i~I~G~~GiGKTtL~~~~~~~~   73 (216)
                      +..++|+||+|+|||||.+.+....
T Consensus         2 G~livi~GPSG~GK~tl~~~L~~~~   26 (205)
T d1s96a_           2 GTLYIVSAPSGAGKSSLIQALLKTQ   26 (205)
T ss_dssp             CCEEEEECCTTSCHHHHHHHHHHHS
T ss_pred             CeEEEEECCCCCCHHHHHHHHHhhC
Confidence            5789999999999999999998764

>d2ak3a1 c.37.1.1 (A:0-124,A:162-225) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]

Probab=97.49  E-value=3.2e-05  Score=54.67  Aligned_cols=25  Identities=24%  Similarity=0.320  Sum_probs=21.8

Q ss_pred             eeEEEEEecCCCcHHHHHHHHHHHh
Q 039455           49 VRFIGICGMGGIGKTTLAKVLYNTL   73 (216)
Q Consensus        49 ~~~i~I~G~~GiGKTtL~~~~~~~~   73 (216)
                      .-.|+|.||+|+||||+++.++.++
T Consensus         6 ~mrIiliG~PGSGKtT~a~~La~~~   30 (189)
T d2ak3a1           6 LLRAAIMGAPGSGKGTVSSRITKHF   30 (189)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHHHB
T ss_pred             ceeEEEECCCCCCHHHHHHHHHHHH
Confidence            3467888999999999999999875

>d1akya1 c.37.1.1 (A:3-130,A:169-220) Adenylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.43  E-value=4.6e-05  Score=53.25  Aligned_cols=24  Identities=29%  Similarity=0.250  Sum_probs=21.1

Q ss_pred             eEEEEEecCCCcHHHHHHHHHHHh
Q 039455           50 RFIGICGMGGIGKTTLAKVLYNTL   73 (216)
Q Consensus        50 ~~i~I~G~~GiGKTtL~~~~~~~~   73 (216)
                      -.|+|.|++|+||||+++.++.++
T Consensus         3 mrIvl~G~pGSGKtT~a~~La~~~   26 (180)
T d1akya1           3 IRMVLIGPPGAGKGTQAPNLQERF   26 (180)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHh
Confidence            357788999999999999999875

>d1e4va1 c.37.1.1 (A:1-121,A:157-214) Adenylate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Escherichia coli [TaxId: 562]

Probab=97.43  E-value=4.3e-05  Score=53.26  Aligned_cols=23  Identities=26%  Similarity=0.219  Sum_probs=20.6

Q ss_pred             EEEEEecCCCcHHHHHHHHHHHh
Q 039455           51 FIGICGMGGIGKTTLAKVLYNTL   73 (216)
Q Consensus        51 ~i~I~G~~GiGKTtL~~~~~~~~   73 (216)
                      .|+|.|++|+||||+++.++.++
T Consensus         2 ~I~i~G~pGSGKsT~~~~La~~~   24 (179)
T d1e4va1           2 RIILLGAPVAGKGTQAQFIMEKY   24 (179)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHh
Confidence            47789999999999999999875

>d1n0wa_ c.37.1.11 (A:) DNA repair protein Rad51, catalytic domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.40  E-value=5.5e-05  Score=53.94  Aligned_cols=38  Identities=21%  Similarity=0.283  Sum_probs=29.0

Q ss_pred             HHHHHhcCCCCeeEEEEEecCCCcHHHHHHHHHHHhcC
Q 039455           38 MNGYLEAGLDDVRFIGICGMGGIGKTTLAKVLYNTLKD   75 (216)
Q Consensus        38 l~~~l~~~~~~~~~i~I~G~~GiGKTtL~~~~~~~~~~   75 (216)
                      |..+|..+-+.+.++.|.|++|+|||+|+.+++.....
T Consensus        12 LD~ll~GGi~~G~v~~i~G~~GsGKT~l~l~la~~~~~   49 (242)
T d1n0wa_          12 LDKLLQGGIETGSITEMFGEFRTGKTQICHTLAVTCQL   49 (242)
T ss_dssp             HHHHTTTSEETTSEEEEECCTTSSHHHHHHHHHHHTTS
T ss_pred             HHHhhcCCCcCCEEEEEEeCCCCCHHHHHHHHHHHHHH
Confidence            44445444345689999999999999999999876543

>d1pzna2 c.37.1.11 (A:96-349) DNA repair protein Rad51, catalytic domain {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=97.39  E-value=8.3e-05  Score=54.42  Aligned_cols=37  Identities=27%  Similarity=0.409  Sum_probs=29.5

Q ss_pred             HHHHHhcCCCCeeEEEEEecCCCcHHHHHHHHHHHhc
Q 039455           38 MNGYLEAGLDDVRFIGICGMGGIGKTTLAKVLYNTLK   74 (216)
Q Consensus        38 l~~~l~~~~~~~~~i~I~G~~GiGKTtL~~~~~~~~~   74 (216)
                      |..+|..+-+.+.++.|.|++|+|||+|+.+++....
T Consensus        25 LD~ll~GGlp~G~~~li~G~pGsGKT~~~lq~~~~~~   61 (254)
T d1pzna2          25 LDKLLGGGIETQAITEVFGEFGSGKTQLAHTLAVMVQ   61 (254)
T ss_dssp             HHHHHTSSEESSEEEEEEESTTSSHHHHHHHHHHHTT
T ss_pred             HHHhhcCCccCCEEEEEEcCCCCCHHHHHHHHHHHhh
Confidence            4445555556679999999999999999999987554

>d1v5wa_ c.37.1.11 (A:) Meiotic recombination protein DMC1/LIM15 homolog {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Meiotic recombination protein DMC1/LIM15 homolog
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.38  E-value=0.0002  Score=52.31  Aligned_cols=38  Identities=24%  Similarity=0.344  Sum_probs=30.3

Q ss_pred             HHHHHHhcCCCCeeEEEEEecCCCcHHHHHHHHHHHhc
Q 039455           37 KMNGYLEAGLDDVRFIGICGMGGIGKTTLAKVLYNTLK   74 (216)
Q Consensus        37 ~l~~~l~~~~~~~~~i~I~G~~GiGKTtL~~~~~~~~~   74 (216)
                      .|..+|..+-+.+.++.|+|++|+|||+++.+++....
T Consensus        25 ~LD~~lgGGip~G~~~~i~G~~GsGKT~lalq~~~~~~   62 (258)
T d1v5wa_          25 EFDKLLGGGIESMAITEAFGEFRTGKTQLSHTLCVTAQ   62 (258)
T ss_dssp             HHHHHTTSSBCSSEEEEEECCTTCTHHHHHHHHHHHTT
T ss_pred             HHHHhhcCCCcCCEEEEEECCCCCCHHHHHHHHHHHHH
Confidence            34455555656789999999999999999999997543

>d2i1qa2 c.37.1.11 (A:65-322) DNA repair protein Rad51, catalytic domain {Archaeon Methanococcus voltae [TaxId: 2188]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Archaeon Methanococcus voltae [TaxId: 2188]

Probab=97.35  E-value=6.9e-05  Score=54.55  Aligned_cols=37  Identities=24%  Similarity=0.387  Sum_probs=28.7

Q ss_pred             HHHHHhcCCCCeeEEEEEecCCCcHHHHHHHHHHHhc
Q 039455           38 MNGYLEAGLDDVRFIGICGMGGIGKTTLAKVLYNTLK   74 (216)
Q Consensus        38 l~~~l~~~~~~~~~i~I~G~~GiGKTtL~~~~~~~~~   74 (216)
                      |...|..+-+.+.++.|.|++|+|||+++..++....
T Consensus        23 LD~ll~GGl~~G~l~~i~G~~G~GKT~~~l~~a~~~~   59 (258)
T d2i1qa2          23 LDSVLGGGLESQSVTEFAGVFGSGKTQIMHQSCVNLQ   59 (258)
T ss_dssp             HHHHTTSSEETTEEEEEEESTTSSHHHHHHHHHHHTT
T ss_pred             HHHhcCCCccCCeEEEEEeCCCCCHHHHHHHHHHHHH
Confidence            4444444445568999999999999999999997554

>d1yrba1 c.37.1.10 (A:1-244) ATP(GTP)-binding protein PAB0955 {Pyrococcus abyssi [TaxId: 29292]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: ATP(GTP)-binding protein PAB0955
species: Pyrococcus abyssi [TaxId: 29292]

Probab=97.35  E-value=9.4e-05  Score=53.82  Aligned_cols=26  Identities=35%  Similarity=0.469  Sum_probs=22.5

Q ss_pred             EEEEEecCCCcHHHHHHHHHHHhcCC
Q 039455           51 FIGICGMGGIGKTTLAKVLYNTLKDQ   76 (216)
Q Consensus        51 ~i~I~G~~GiGKTtL~~~~~~~~~~~   76 (216)
                      +++|+|+.|+|||||+..+.+.....
T Consensus         2 vi~v~G~~GsGKTTLl~~ll~~~~~~   27 (244)
T d1yrba1           2 IVVFVGTAGSGKTTLTGEFGRYLEDN   27 (244)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHHTTT
T ss_pred             EEEEEcCCCCcHHHHHHHHHHHHhhC
Confidence            78999999999999999998765443

>d2jdid3 c.37.1.11 (D:82-357) Central domain of beta subunit of F1 ATP synthase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Central domain of beta subunit of F1 ATP synthase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.27  E-value=0.0003  Score=52.28  Aligned_cols=36  Identities=33%  Similarity=0.376  Sum_probs=26.6

Q ss_pred             CeeEEEEEecCCCcHHHHHHHHHHHhcC-CCCceEee
Q 039455           48 DVRFIGICGMGGIGKTTLAKVLYNTLKD-QFEASSFL   83 (216)
Q Consensus        48 ~~~~i~I~G~~GiGKTtL~~~~~~~~~~-~~~~~~~~   83 (216)
                      +++.++|.|++|+|||+|+..++....+ +-...++.
T Consensus        67 kGQr~~If~~~g~GKt~l~~~i~~~~~~~~~~v~V~~  103 (276)
T d2jdid3          67 KGGKIGLFGGAGVGKTVLIMELINNVAKAHGGYSVFA  103 (276)
T ss_dssp             TTCEEEEEECTTSSHHHHHHHHHHHHTTTCSSEEEEE
T ss_pred             CCCEEEeeCCCCCCHHHHHHHHHHHHHhhCCCeEEEE
Confidence            3567999999999999999999876433 33334444

>d1szpa2 c.37.1.11 (A:145-395) DNA repair protein Rad51, catalytic domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.26  E-value=6e-05  Score=54.84  Aligned_cols=37  Identities=22%  Similarity=0.293  Sum_probs=28.8

Q ss_pred             HHHHHHhcCCCCeeEEEEEecCCCcHHHHHHHHHHHh
Q 039455           37 KMNGYLEAGLDDVRFIGICGMGGIGKTTLAKVLYNTL   73 (216)
Q Consensus        37 ~l~~~l~~~~~~~~~i~I~G~~GiGKTtL~~~~~~~~   73 (216)
                      .|...|..+-+.+.++.|.|++|+|||+|+.+++...
T Consensus        22 ~LD~ll~GGi~~G~~~li~G~pGsGKT~l~lq~~~~~   58 (251)
T d1szpa2          22 NLDTLLGGGVETGSITELFGEFRTGKSQLCHTLAVTC   58 (251)
T ss_dssp             HHHHHHTSSEESSSEEEEEESTTSSHHHHHHHHTTTT
T ss_pred             HHHhhhCCCCcCCeEEEEEcCCCCCHHHHHHHHHHHh
Confidence            3445555554567899999999999999999998643

>d1uf9a_ c.37.1.1 (A:) Dephospho-CoA kinase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Dephospho-CoA kinase
species: Thermus thermophilus [TaxId: 274]

Probab=97.19  E-value=0.00012  Score=51.37  Aligned_cols=22  Identities=45%  Similarity=0.564  Sum_probs=19.5

Q ss_pred             eeEEEEEecCCCcHHHHHHHHH
Q 039455           49 VRFIGICGMGGIGKTTLAKVLY   70 (216)
Q Consensus        49 ~~~i~I~G~~GiGKTtL~~~~~   70 (216)
                      +-+|+|+|+.|+||||+++.+.
T Consensus         3 p~IIgitG~~gSGKstva~~l~   24 (191)
T d1uf9a_           3 PIIIGITGNIGSGKSTVAALLR   24 (191)
T ss_dssp             CEEEEEEECTTSCHHHHHHHHH
T ss_pred             CEEEEEECCCCCCHHHHHHHHH
Confidence            4688999999999999999874

>d1ihua2 c.37.1.10 (A:308-586) Arsenite-translocating ATPase ArsA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Arsenite-translocating ATPase ArsA
species: Escherichia coli [TaxId: 562]

Probab=97.14  E-value=0.00035  Score=51.93  Aligned_cols=48  Identities=23%  Similarity=0.318  Sum_probs=33.6

Q ss_pred             HHHHHHHHHhcCCCCeeEEEEEecCCCcHHHHHHHHHHHhcCCCCceEee
Q 039455           34 RMEKMNGYLEAGLDDVRFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFL   83 (216)
Q Consensus        34 ~~~~l~~~l~~~~~~~~~i~I~G~~GiGKTtL~~~~~~~~~~~~~~~~~~   83 (216)
                      ++..+...+..  ...++|+++|-||+||||++-.++..+......+..+
T Consensus         7 ~~~~~~~~~~~--~~~~iii~sGKGGVGKTT~a~nLA~~lA~~G~rVllv   54 (279)
T d1ihua2           7 SLSALVDDIAR--NEHGLIMLMGKGGVGKTTMAAAIAVRLADMGFDVHLT   54 (279)
T ss_dssp             CHHHHHHHHHT--TSCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEE
T ss_pred             cHHHHHHHhhc--CCCEEEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEE
Confidence            45566666664  3458999999999999999888887654443334443

>d1odfa_ c.37.1.6 (A:) Hypothetical protein Ygr205W {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Hypothetical protein Ygr205W
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.12  E-value=0.00033  Score=52.48  Aligned_cols=30  Identities=30%  Similarity=0.383  Sum_probs=24.3

Q ss_pred             CCeeEEEEEecCCCcHHHHHHHHHHHhcCC
Q 039455           47 DDVRFIGICGMGGIGKTTLAKVLYNTLKDQ   76 (216)
Q Consensus        47 ~~~~~i~I~G~~GiGKTtL~~~~~~~~~~~   76 (216)
                      ..+-+|+|.|+.|+|||||+..+...+.+.
T Consensus        25 ~~P~iIGi~G~qGSGKSTl~~~l~~~L~~~   54 (286)
T d1odfa_          25 KCPLFIFFSGPQGSGKSFTSIQIYNHLMEK   54 (286)
T ss_dssp             CSCEEEEEECCTTSSHHHHHHHHHHHHHHH
T ss_pred             CCCEEEEeECCCCCCHHHHHHHHHHHHHHH
Confidence            345588999999999999999988765443

>d1a7ja_ c.37.1.6 (A:) Phosphoribulokinase {Rhodobacter sphaeroides [TaxId: 1063]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Phosphoribulokinase
species: Rhodobacter sphaeroides [TaxId: 1063]

Probab=97.11  E-value=8.3e-05  Score=55.77  Aligned_cols=28  Identities=18%  Similarity=0.399  Sum_probs=21.3

Q ss_pred             CeeEEEEEecCCCcHHHHHHHHHHHhcC
Q 039455           48 DVRFIGICGMGGIGKTTLAKVLYNTLKD   75 (216)
Q Consensus        48 ~~~~i~I~G~~GiGKTtL~~~~~~~~~~   75 (216)
                      +.++|+|.|++|+||||+++.+.+.+..
T Consensus         3 k~pIIgIaG~SGSGKTTva~~l~~i~~~   30 (288)
T d1a7ja_           3 KHPIISVTGSSGAGTSTVKHTFDQIFRR   30 (288)
T ss_dssp             TSCEEEEESCC---CCTHHHHHHHHHHH
T ss_pred             CCCEEEEECCCCCcHHHHHHHHHHHHhh
Confidence            4579999999999999999999886653

>d1u0la2 c.37.1.8 (A:69-293) Probable GTPase EngC (YjeQ), C-terminal domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngC (YjeQ), C-terminal domain
species: Thermotoga maritima [TaxId: 2336]

Probab=97.10  E-value=0.0002  Score=51.67  Aligned_cols=33  Identities=24%  Similarity=0.635  Sum_probs=26.4

Q ss_pred             HHHHHHHHhcCCCCeeEEEEEecCCCcHHHHHHHHHHH
Q 039455           35 MEKMNGYLEAGLDDVRFIGICGMGGIGKTTLAKVLYNT   72 (216)
Q Consensus        35 ~~~l~~~l~~~~~~~~~i~I~G~~GiGKTtL~~~~~~~   72 (216)
                      ++.|..++..     +..++.|.+|+|||||+..+...
T Consensus        86 ~~~L~~~l~~-----kt~~~~G~SGVGKSTLiN~L~~~  118 (225)
T d1u0la2          86 IEELKEYLKG-----KISTMAGLSGVGKSSLLNAINPG  118 (225)
T ss_dssp             HHHHHHHHSS-----SEEEEECSTTSSHHHHHHHHSTT
T ss_pred             HhhHHHHhcC-----CeEEEECCCCCCHHHHHHhhcch
Confidence            5667776642     57889999999999999998754

>d1xpua3 c.37.1.11 (A:129-417) Transcription termination factor Rho, ATPase domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Transcription termination factor Rho, ATPase domain
species: Escherichia coli [TaxId: 562]

Probab=97.10  E-value=0.00048  Score=51.48  Aligned_cols=37  Identities=14%  Similarity=0.016  Sum_probs=27.5

Q ss_pred             HHHHHhcCCCCeeEEEEEecCCCcHHHHHHHHHHHhcC
Q 039455           38 MNGYLEAGLDDVRFIGICGMGGIGKTTLAKVLYNTLKD   75 (216)
Q Consensus        38 l~~~l~~~~~~~~~i~I~G~~GiGKTtL~~~~~~~~~~   75 (216)
                      .++.+.. -..+..++|.|++|+|||+|+..++.....
T Consensus        33 ~ID~l~P-igrGQr~~I~g~~g~GKT~l~~~i~~~~~~   69 (289)
T d1xpua3          33 VLDLASP-IGRGQRGLIVAPPKAGKTMLLQNIAQSIAY   69 (289)
T ss_dssp             HHHHHSC-CBTTCEEEEEECSSSSHHHHHHHHHHHHHH
T ss_pred             eeeeccc-ccCCCeeeEeCCCCCCHHHHHHHHHHHHhh
Confidence            3444432 235689999999999999999999985543

>d1g8pa_ c.37.1.20 (A:) ATPase subunit of magnesium chelatase, BchI {Rhodobacter capsulatus [TaxId: 1061]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ATPase subunit of magnesium chelatase, BchI
species: Rhodobacter capsulatus [TaxId: 1061]

Probab=97.10  E-value=0.00016  Score=55.43  Aligned_cols=44  Identities=18%  Similarity=0.133  Sum_probs=32.0

Q ss_pred             ccccchhHHHHHHHHHhcCCCCeeEEEEEecCCCcHHHHHHHHHHH
Q 039455           27 GLVGIASRMEKMNGYLEAGLDDVRFIGICGMGGIGKTTLAKVLYNT   72 (216)
Q Consensus        27 ~~vgR~~~~~~l~~~l~~~~~~~~~i~I~G~~GiGKTtL~~~~~~~   72 (216)
                      ..+|.+.....|.-....  .....+.|.|++|+|||+||+.++.-
T Consensus         8 ~I~Gq~~~kral~laa~~--~~~h~vLl~G~pG~GKT~lar~~~~i   51 (333)
T d1g8pa_           8 AIVGQEDMKLALLLTAVD--PGIGGVLVFGDRGTGKSTAVRALAAL   51 (333)
T ss_dssp             GSCSCHHHHHHHHHHHHC--GGGCCEEEECCGGGCTTHHHHHHHHH
T ss_pred             hccCcHHHHHHHHHHHhc--cCCCeEEEECCCCccHHHHHHHHHHh
Confidence            469998766655433321  12357999999999999999999863

>d1r8sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF1 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARF1 [TaxId: 9606]

Probab=97.09  E-value=0.00015  Score=48.99  Aligned_cols=22  Identities=32%  Similarity=0.282  Sum_probs=19.4

Q ss_pred             EEEEEecCCCcHHHHHHHHHHH
Q 039455           51 FIGICGMGGIGKTTLAKVLYNT   72 (216)
Q Consensus        51 ~i~I~G~~GiGKTtL~~~~~~~   72 (216)
                      .|+|+|++|+|||||+..+...
T Consensus         2 kivlvG~~~vGKSsLi~~l~~~   23 (160)
T d1r8sa_           2 RILMVGLDAAGKTTILYKLKLG   23 (160)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHhcC
Confidence            3789999999999999998763

>d2vp4a1 c.37.1.1 (A:12-208) Deoxyribonucleoside kinase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxyribonucleoside kinase
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=97.08  E-value=0.00013  Score=51.43  Aligned_cols=27  Identities=26%  Similarity=0.084  Sum_probs=23.1

Q ss_pred             CCeeEEEEEecCCCcHHHHHHHHHHHh
Q 039455           47 DDVRFIGICGMGGIGKTTLAKVLYNTL   73 (216)
Q Consensus        47 ~~~~~i~I~G~~GiGKTtL~~~~~~~~   73 (216)
                      .++-.|+|-|+.|+||||+++.+.+.+
T Consensus         7 ~kp~~I~ieG~~GsGKTTl~~~L~~~l   33 (197)
T d2vp4a1           7 TQPFTVLIEGNIGSGKTTYLNHFEKYK   33 (197)
T ss_dssp             CCCEEEEEECSTTSCHHHHHHTTGGGT
T ss_pred             CCceEEEEECCCCCCHHHHHHHHHHHh
Confidence            345689999999999999999987755

>d1cp2a_ c.37.1.10 (A:) Nitrogenase iron protein {Clostridium pasteurianum [TaxId: 1501]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Nitrogenase iron protein
species: Clostridium pasteurianum [TaxId: 1501]

Probab=97.08  E-value=0.0003  Score=52.11  Aligned_cols=35  Identities=31%  Similarity=0.430  Sum_probs=27.9

Q ss_pred             eEEEEEecCCCcHHHHHHHHHHHhcCCCCceEeec
Q 039455           50 RFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLA   84 (216)
Q Consensus        50 ~~i~I~G~~GiGKTtL~~~~~~~~~~~~~~~~~~~   84 (216)
                      +.|+|+|-||+||||++-.++..+.+....+..++
T Consensus         2 r~Iai~gKGGvGKTT~a~nLA~~LA~~G~rVllID   36 (269)
T d1cp2a_           2 RQVAIYGKGGIGKSTTTQNLTSGLHAMGKTIMVVG   36 (269)
T ss_dssp             EEEEEEECTTSSHHHHHHHHHHHHHTTTCCEEEEE
T ss_pred             CEEEEECCCcCCHHHHHHHHHHHHHhCCCcEEEEe
Confidence            57889999999999999999987766544555554

>d1f6ba_ c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: 10029]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: SAR1
species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]

Probab=97.07  E-value=0.00028  Score=48.72  Aligned_cols=33  Identities=24%  Similarity=0.298  Sum_probs=24.9

Q ss_pred             HHHHHhcCCCCeeEEEEEecCCCcHHHHHHHHHH
Q 039455           38 MNGYLEAGLDDVRFIGICGMGGIGKTTLAKVLYN   71 (216)
Q Consensus        38 l~~~l~~~~~~~~~i~I~G~~GiGKTtL~~~~~~   71 (216)
                      +.+++... .+...|+|+|.+|+|||||+..+..
T Consensus         3 ~~~~~~~~-~k~~kI~lvG~~~vGKTsLl~~l~~   35 (186)
T d1f6ba_           3 VLQFLGLY-KKTGKLVFLGLDNAGKTTLLHMLKD   35 (186)
T ss_dssp             HHHHHTCT-TCCEEEEEEEETTSSHHHHHHHHSC
T ss_pred             hHHhcccc-CCCCEEEEECCCCCCHHHHHHHHhC
Confidence            34455444 3446788999999999999999865

>d1tf7a1 c.37.1.11 (A:14-255) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Circadian clock protein KaiC
species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]

Probab=97.05  E-value=0.00013  Score=52.59  Aligned_cols=35  Identities=23%  Similarity=0.277  Sum_probs=27.2

Q ss_pred             HHHHHhcCCCCeeEEEEEecCCCcHHHHHHHHHHH
Q 039455           38 MNGYLEAGLDDVRFIGICGMGGIGKTTLAKVLYNT   72 (216)
Q Consensus        38 l~~~l~~~~~~~~~i~I~G~~GiGKTtL~~~~~~~   72 (216)
                      |...+..+-+.+.++.|.|++|+|||+|+..++..
T Consensus        15 LD~~l~GGi~~G~~~~I~G~~G~GKT~la~~~~~~   49 (242)
T d1tf7a1          15 FDDISHGGLPIGRSTLVSGTSGTGKTLFSIQFLYN   49 (242)
T ss_dssp             HHHHTTSSEETTSEEEEEESTTSSHHHHHHHHHHH
T ss_pred             HHHhhcCCCcCCeEEEEEeCCCCCHHHHHHHHHHH
Confidence            45555544456789999999999999999887653

>d1gsia_ c.37.1.1 (A:) Thymidylate kinase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=96.99  E-value=0.00032  Score=49.73  Aligned_cols=26  Identities=35%  Similarity=0.572  Sum_probs=23.1

Q ss_pred             EEEEEecCCCcHHHHHHHHHHHhcCC
Q 039455           51 FIGICGMGGIGKTTLAKVLYNTLKDQ   76 (216)
Q Consensus        51 ~i~I~G~~GiGKTtL~~~~~~~~~~~   76 (216)
                      .|+|-|.-|+||||+++.+...+..+
T Consensus         2 lI~ieG~dGsGKST~~~~L~~~l~~~   27 (208)
T d1gsia_           2 LIAIEGVDGAGKRTLVEKLSGAFRAA   27 (208)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHHHHT
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHHHC
Confidence            58899999999999999999887654

>d1um8a_ c.37.1.20 (A:) ClpX {Helicobacter pylori [TaxId: 210]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpX
species: Helicobacter pylori [TaxId: 210]

Probab=96.97  E-value=0.00043  Score=53.78  Aligned_cols=26  Identities=35%  Similarity=0.369  Sum_probs=22.7

Q ss_pred             CeeEEEEEecCCCcHHHHHHHHHHHh
Q 039455           48 DVRFIGICGMGGIGKTTLAKVLYNTL   73 (216)
Q Consensus        48 ~~~~i~I~G~~GiGKTtL~~~~~~~~   73 (216)
                      ....+.+.||+|+|||-||+.++...
T Consensus        67 p~~niLfiGPTGvGKTElAk~LA~~~   92 (364)
T d1um8a_          67 SKSNILLIGPTGSGKTLMAQTLAKHL   92 (364)
T ss_dssp             CCCCEEEECCTTSSHHHHHHHHHHHT
T ss_pred             CCcceeeeCCCCccHHHHHHHHHhhc
Confidence            34679999999999999999999765

>d1upta_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARL1 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL1 [TaxId: 9606]

Probab=96.95  E-value=0.00023  Score=48.31  Aligned_cols=23  Identities=39%  Similarity=0.346  Sum_probs=20.3

Q ss_pred             eEEEEEecCCCcHHHHHHHHHHH
Q 039455           50 RFIGICGMGGIGKTTLAKVLYNT   72 (216)
Q Consensus        50 ~~i~I~G~~GiGKTtL~~~~~~~   72 (216)
                      -.|+|+|.+|+|||||++.+...
T Consensus         6 ~kI~ivG~~~vGKSSLi~~~~~~   28 (169)
T d1upta_           6 MRILILGLDGAGKTTILYRLQVG   28 (169)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHS
T ss_pred             eEEEEECCCCCCHHHHHHHHhCC
Confidence            45899999999999999999763

>d1zj6a1 c.37.1.8 (A:2-178) ADP-ribosylation factor {Human (Homo sapiens), ARL5A [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL5A [TaxId: 9606]

Probab=96.92  E-value=0.00056  Score=46.95  Aligned_cols=32  Identities=19%  Similarity=0.225  Sum_probs=24.6

Q ss_pred             HHHHHHhcCCCCeeEEEEEecCCCcHHHHHHHHHH
Q 039455           37 KMNGYLEAGLDDVRFIGICGMGGIGKTTLAKVLYN   71 (216)
Q Consensus        37 ~l~~~l~~~~~~~~~i~I~G~~GiGKTtL~~~~~~   71 (216)
                      .+..++..   +.-.|+|+|.+|+|||||+..+..
T Consensus         6 ~~~~~~~~---k~~kI~vvG~~~~GKSsLi~rl~~   37 (177)
T d1zj6a1           6 RIWRLFNH---QEHKVIIVGLDNAGKTTILYQFSM   37 (177)
T ss_dssp             HHHHHHTT---SCEEEEEEESTTSSHHHHHHHHHT
T ss_pred             HHHHHhCC---CeEEEEEECCCCCCHHHHHHHHhc
Confidence            34555553   336788999999999999999876

>d1h65a_ c.37.1.8 (A:) Chloroplast protein translocon GTPase Toc34 {Garden pea (Pisum sativum) [TaxId: 3888]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Chloroplast protein translocon GTPase Toc34
species: Garden pea (Pisum sativum) [TaxId: 3888]

Probab=96.92  E-value=0.00065  Score=50.11  Aligned_cols=39  Identities=21%  Similarity=0.344  Sum_probs=29.8

Q ss_pred             HHHHHHHHHhcCCCCeeEEEEEecCCCcHHHHHHHHHHH
Q 039455           34 RMEKMNGYLEAGLDDVRFIGICGMGGIGKTTLAKVLYNT   72 (216)
Q Consensus        34 ~~~~l~~~l~~~~~~~~~i~I~G~~GiGKTtL~~~~~~~   72 (216)
                      .+.++...+.....+.-.|+|+|.+|+|||||+..+.++
T Consensus        17 ~l~e~~~~l~~~~~~~l~I~LvG~tg~GKSSliN~ilg~   55 (257)
T d1h65a_          17 KLLELLGNLKQEDVNSLTILVMGKGGVGKSSTVNSIIGE   55 (257)
T ss_dssp             HHHHHHHHHHHTTCCEEEEEEEESTTSSHHHHHHHHHTS
T ss_pred             HHHHHHHHHhhcCCCCcEEEEECCCCCcHHHHHHHHhCC
Confidence            344555555555456678999999999999999999874

>d1tmka_ c.37.1.1 (A:) Thymidylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.92  E-value=0.00038  Score=49.91  Aligned_cols=29  Identities=34%  Similarity=0.523  Sum_probs=25.7

Q ss_pred             CeeEEEEEecCCCcHHHHHHHHHHHhcCC
Q 039455           48 DVRFIGICGMGGIGKTTLAKVLYNTLKDQ   76 (216)
Q Consensus        48 ~~~~i~I~G~~GiGKTtL~~~~~~~~~~~   76 (216)
                      ++..|+|-|+-|+||||+++.++..++.+
T Consensus         2 kGk~I~iEG~DGsGKST~~~~L~~~L~~~   30 (214)
T d1tmka_           2 RGKLILIEGLDRTGKTTQCNILYKKLQPN   30 (214)
T ss_dssp             CCCEEEEEESTTSSHHHHHHHHHHHTTTS
T ss_pred             CeEEEEEECCCCCcHHHHHHHHHHHHHhC
Confidence            46789999999999999999999887654

>d1svia_ c.37.1.8 (A:) Probable GTPase EngB {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngB
species: Bacillus subtilis [TaxId: 1423]

Probab=96.91  E-value=0.00032  Score=49.31  Aligned_cols=24  Identities=25%  Similarity=0.481  Sum_probs=21.5

Q ss_pred             CeeEEEEEecCCCcHHHHHHHHHH
Q 039455           48 DVRFIGICGMGGIGKTTLAKVLYN   71 (216)
Q Consensus        48 ~~~~i~I~G~~GiGKTtL~~~~~~   71 (216)
                      ..+.|+|+|.+|+|||||++.+.+
T Consensus        22 ~~~~I~lvG~~n~GKSTLin~L~g   45 (195)
T d1svia_          22 GLPEIALAGRSNVGKSSFINSLIN   45 (195)
T ss_dssp             CCCEEEEEEBTTSSHHHHHHHHHT
T ss_pred             CCCEEEEECCCCCCHHHHHHHhcC
Confidence            456799999999999999999985

>d4tmka_ c.37.1.1 (A:) Thymidylate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Escherichia coli [TaxId: 562]

Probab=96.85  E-value=0.00034  Score=49.82  Aligned_cols=28  Identities=39%  Similarity=0.580  Sum_probs=24.5

Q ss_pred             eeEEEEEecCCCcHHHHHHHHHHHhcCC
Q 039455           49 VRFIGICGMGGIGKTTLAKVLYNTLKDQ   76 (216)
Q Consensus        49 ~~~i~I~G~~GiGKTtL~~~~~~~~~~~   76 (216)
                      ++-|+|-|+.|+||||+++.+...+...
T Consensus         2 gkfIviEG~dGsGKsT~~~~L~~~L~~~   29 (210)
T d4tmka_           2 SKYIVIEGLEGAGKTTARNVVVETLEQL   29 (210)
T ss_dssp             CCEEEEEECTTSCHHHHHHHHHHHHHHT
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHHHHhC
Confidence            4679999999999999999999877654

>d2a5ja1 c.37.1.8 (A:9-181) Rab2b {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab2b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.85  E-value=0.00031  Score=48.41  Aligned_cols=21  Identities=29%  Similarity=0.301  Sum_probs=19.0

Q ss_pred             EEEEEecCCCcHHHHHHHHHH
Q 039455           51 FIGICGMGGIGKTTLAKVLYN   71 (216)
Q Consensus        51 ~i~I~G~~GiGKTtL~~~~~~   71 (216)
                      -|+|+|++|+|||+|+..+.+
T Consensus         5 KivvvG~~~vGKTsli~r~~~   25 (173)
T d2a5ja1           5 KYIIIGDTGVGKSCLLLQFTD   25 (173)
T ss_dssp             EEEEESSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHHhc
Confidence            478999999999999999876

>d1ihua1 c.37.1.10 (A:1-296) Arsenite-translocating ATPase ArsA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Arsenite-translocating ATPase ArsA
species: Escherichia coli [TaxId: 562]

Probab=96.84  E-value=0.00051  Score=51.30  Aligned_cols=36  Identities=22%  Similarity=0.296  Sum_probs=27.6

Q ss_pred             CeeEEEEEecCCCcHHHHHHHHHHHhcCCCCceEee
Q 039455           48 DVRFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFL   83 (216)
Q Consensus        48 ~~~~i~I~G~~GiGKTtL~~~~~~~~~~~~~~~~~~   83 (216)
                      ..+.+.++|-||+||||++..++..+.++-..+..+
T Consensus         7 ~p~~i~~sGKGGVGKTTvaa~lA~~lA~~G~rVLlv   42 (296)
T d1ihua1           7 IPPYLFFTGKGGVGKTSISCATAIRLAEQGKRVLLV   42 (296)
T ss_dssp             CCSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEE
T ss_pred             CCeEEEEECCCcChHHHHHHHHHHHHHHCCCCEEEE
Confidence            357889999999999999999988765543334444

>d1z0fa1 c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab14
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.83  E-value=0.00034  Score=47.86  Aligned_cols=21  Identities=29%  Similarity=0.286  Sum_probs=19.1

Q ss_pred             EEEEEecCCCcHHHHHHHHHH
Q 039455           51 FIGICGMGGIGKTTLAKVLYN   71 (216)
Q Consensus        51 ~i~I~G~~GiGKTtL~~~~~~   71 (216)
                      -|+|+|.+|+|||+|+..+.+
T Consensus         6 KivlvG~~~vGKTsli~~~~~   26 (166)
T d1z0fa1           6 KYIIIGDMGVGKSCLLHQFTE   26 (166)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHHHh
Confidence            478999999999999999886

>d1nrjb_ c.37.1.8 (B:) Signal recognition particle receptor beta-subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Signal recognition particle receptor beta-subunit
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.83  E-value=0.00035  Score=49.47  Aligned_cols=23  Identities=35%  Similarity=0.338  Sum_probs=21.1

Q ss_pred             eEEEEEecCCCcHHHHHHHHHHH
Q 039455           50 RFIGICGMGGIGKTTLAKVLYNT   72 (216)
Q Consensus        50 ~~i~I~G~~GiGKTtL~~~~~~~   72 (216)
                      +.|+|+|.+|+|||||+..+.+.
T Consensus         4 p~V~lvG~~n~GKTSLln~l~~~   26 (209)
T d1nrjb_           4 PSIIIAGPQNSGKTSLLTLLTTD   26 (209)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHS
T ss_pred             CEEEEECCCCCCHHHHHHHHhCC
Confidence            68999999999999999999863

>d1jjva_ c.37.1.1 (A:) Dephospho-CoA kinase {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Dephospho-CoA kinase
species: Haemophilus influenzae [TaxId: 727]

Probab=96.83  E-value=0.00031  Score=49.96  Aligned_cols=21  Identities=38%  Similarity=0.593  Sum_probs=18.6

Q ss_pred             eEEEEEecCCCcHHHHHHHHH
Q 039455           50 RFIGICGMGGIGKTTLAKVLY   70 (216)
Q Consensus        50 ~~i~I~G~~GiGKTtL~~~~~   70 (216)
                      -+|+|+|..|+||||+++.+.
T Consensus         3 ~iIgITG~igSGKStv~~~l~   23 (205)
T d1jjva_           3 YIVGLTGGIGSGKTTIANLFT   23 (205)
T ss_dssp             EEEEEECSTTSCHHHHHHHHH
T ss_pred             EEEEEECCCCCCHHHHHHHHH
Confidence            478999999999999998774

>d1kkma_ c.91.1.2 (A:) HPr kinase HprK C-terminal domain {Lactobacillus casei [TaxId: 1582]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: HPr kinase HprK C-terminal domain
domain: HPr kinase HprK C-terminal domain
species: Lactobacillus casei [TaxId: 1582]

Probab=96.83  E-value=0.00041  Score=48.04  Aligned_cols=24  Identities=29%  Similarity=0.236  Sum_probs=21.3

Q ss_pred             eeEEEEEecCCCcHHHHHHHHHHH
Q 039455           49 VRFIGICGMGGIGKTTLAKVLYNT   72 (216)
Q Consensus        49 ~~~i~I~G~~GiGKTtL~~~~~~~   72 (216)
                      +..++|.|++|+||||++..+..+
T Consensus        14 g~gvl~~G~sG~GKStlal~l~~~   37 (176)
T d1kkma_          14 GLGVLITGDSGVGKSETALELVQR   37 (176)
T ss_dssp             TEEEEEECCTTSCHHHHHHHHHHT
T ss_pred             CEEEEEEeCCCCCHHHHHHHHHHc
Confidence            478999999999999999988763

>d1z2aa1 c.37.1.8 (A:8-171) Rab23 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab23
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.83  E-value=0.00034  Score=47.73  Aligned_cols=21  Identities=19%  Similarity=0.449  Sum_probs=19.1

Q ss_pred             EEEEEecCCCcHHHHHHHHHH
Q 039455           51 FIGICGMGGIGKTTLAKVLYN   71 (216)
Q Consensus        51 ~i~I~G~~GiGKTtL~~~~~~   71 (216)
                      -|++.|.+|+|||||+..+.+
T Consensus         4 Kv~liG~~~vGKSsLi~rl~~   24 (164)
T d1z2aa1           4 KMVVVGNGAVGKSSMIQRYCK   24 (164)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHHHh
Confidence            478999999999999998886

>d1fzqa_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL3 [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Mouse (Mus musculus), ARL3 [TaxId: 10090]

Probab=96.82  E-value=0.00049  Score=47.33  Aligned_cols=26  Identities=38%  Similarity=0.363  Sum_probs=21.7

Q ss_pred             CCCeeEEEEEecCCCcHHHHHHHHHH
Q 039455           46 LDDVRFIGICGMGGIGKTTLAKVLYN   71 (216)
Q Consensus        46 ~~~~~~i~I~G~~GiGKTtL~~~~~~   71 (216)
                      .++.--|+++|++|+|||||+..+.+
T Consensus        13 ~~~~~kI~vvG~~~vGKSsLi~~l~~   38 (176)
T d1fzqa_          13 PDQEVRILLLGLDNAGKTTLLKQLAS   38 (176)
T ss_dssp             CSSCEEEEEEESTTSSHHHHHHHHCC
T ss_pred             CCCEEEEEEECCCCCCHHHHHHHHhc
Confidence            34456799999999999999998854

>d1vhta_ c.37.1.1 (A:) Dephospho-CoA kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Dephospho-CoA kinase
species: Escherichia coli [TaxId: 562]

Probab=96.80  E-value=0.00039  Score=49.57  Aligned_cols=20  Identities=30%  Similarity=0.484  Sum_probs=18.3

Q ss_pred             EEEEEecCCCcHHHHHHHHH
Q 039455           51 FIGICGMGGIGKTTLAKVLY   70 (216)
Q Consensus        51 ~i~I~G~~GiGKTtL~~~~~   70 (216)
                      +|+|+|+.|+||||+++.+.
T Consensus         5 iIgitG~igSGKStv~~~l~   24 (208)
T d1vhta_           5 IVALTGGIGSGKSTVANAFA   24 (208)
T ss_dssp             EEEEECCTTSCHHHHHHHHH
T ss_pred             EEEEECCCcCCHHHHHHHHH
Confidence            79999999999999998764

>d3raba_ c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab3a
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=96.79  E-value=0.00038  Score=47.76  Aligned_cols=21  Identities=29%  Similarity=0.268  Sum_probs=19.2

Q ss_pred             EEEEEecCCCcHHHHHHHHHH
Q 039455           51 FIGICGMGGIGKTTLAKVLYN   71 (216)
Q Consensus        51 ~i~I~G~~GiGKTtL~~~~~~   71 (216)
                      -|+++|.+|+|||||+..+..
T Consensus         7 Ki~vvG~~~vGKTsLi~~l~~   27 (169)
T d3raba_           7 KILIIGNSSVGKTSFLFRYAD   27 (169)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHHHc
Confidence            488999999999999999876

>d1p5zb_ c.37.1.1 (B:) Deoxycytidine kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxycytidine kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.79  E-value=0.0002  Score=51.94  Aligned_cols=26  Identities=27%  Similarity=0.364  Sum_probs=23.2

Q ss_pred             eeEEEEEecCCCcHHHHHHHHHHHhc
Q 039455           49 VRFIGICGMGGIGKTTLAKVLYNTLK   74 (216)
Q Consensus        49 ~~~i~I~G~~GiGKTtL~~~~~~~~~   74 (216)
                      .+.|+|-|+.|+||||+++.+++.+.
T Consensus         2 ~k~I~ieG~dGsGKST~~~~L~~~l~   27 (241)
T d1p5zb_           2 IKKISIEGNIAAGKSTFVNILKQLCE   27 (241)
T ss_dssp             CEEEEEECSTTSSHHHHHTTTGGGCT
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHHHh
Confidence            47899999999999999999988664

>d2qtvb1 c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: SAR1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.79  E-value=0.00039  Score=46.84  Aligned_cols=22  Identities=36%  Similarity=0.443  Sum_probs=19.7

Q ss_pred             EEEEEecCCCcHHHHHHHHHHH
Q 039455           51 FIGICGMGGIGKTTLAKVLYNT   72 (216)
Q Consensus        51 ~i~I~G~~GiGKTtL~~~~~~~   72 (216)
                      -|+|+|++|+|||||+..+.+.
T Consensus         2 KI~liG~~nvGKSSLln~l~~~   23 (166)
T d2qtvb1           2 KLLFLGLDNAGKTTLLHMLKND   23 (166)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            4789999999999999998863

>d1kaoa_ c.37.1.8 (A:) Rap2a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rap2a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.78  E-value=0.00039  Score=47.52  Aligned_cols=22  Identities=27%  Similarity=0.504  Sum_probs=19.7

Q ss_pred             EEEEEecCCCcHHHHHHHHHHH
Q 039455           51 FIGICGMGGIGKTTLAKVLYNT   72 (216)
Q Consensus        51 ~i~I~G~~GiGKTtL~~~~~~~   72 (216)
                      -|+|+|.+|+|||+|+..+.+.
T Consensus         5 Ki~lvG~~~vGKTsLi~r~~~~   26 (167)
T d1kaoa_           5 KVVVLGSGGVGKSALTVQFVTG   26 (167)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCcCHHHHHHHHHhC
Confidence            5789999999999999999863

>d1knxa2 c.91.1.2 (A:133-309) HPr kinase HprK C-terminal domain {Mycoplasma pneumoniae [TaxId: 2104]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: HPr kinase HprK C-terminal domain
domain: HPr kinase HprK C-terminal domain
species: Mycoplasma pneumoniae [TaxId: 2104]

Probab=96.77  E-value=0.00043  Score=47.93  Aligned_cols=23  Identities=35%  Similarity=0.300  Sum_probs=20.8

Q ss_pred             eeEEEEEecCCCcHHHHHHHHHH
Q 039455           49 VRFIGICGMGGIGKTTLAKVLYN   71 (216)
Q Consensus        49 ~~~i~I~G~~GiGKTtL~~~~~~   71 (216)
                      +..+.|.|++|+||||++..+..
T Consensus        15 g~gvli~G~sG~GKS~lal~l~~   37 (177)
T d1knxa2          15 GVGVLLTGRSGIGKSECALDLIN   37 (177)
T ss_dssp             TEEEEEEESSSSSHHHHHHHHHT
T ss_pred             CEEEEEEcCCCCCHHHHHHHHHH
Confidence            47899999999999999999875

>d2ew1a1 c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab30
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.76  E-value=0.00043  Score=47.54  Aligned_cols=21  Identities=33%  Similarity=0.495  Sum_probs=19.4

Q ss_pred             EEEEEecCCCcHHHHHHHHHH
Q 039455           51 FIGICGMGGIGKTTLAKVLYN   71 (216)
Q Consensus        51 ~i~I~G~~GiGKTtL~~~~~~   71 (216)
                      -|+|+|.+|+|||+|++.+.+
T Consensus         7 Ki~lvG~~~vGKTsLi~~l~~   27 (171)
T d2ew1a1           7 KIVLIGNAGVGKTCLVRRFTQ   27 (171)
T ss_dssp             EEEEEESTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHHHh
Confidence            488999999999999999986

>d1htwa_ c.37.1.18 (A:) Hypothetical protein HI0065 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: YjeE-like
domain: Hypothetical protein HI0065
species: Haemophilus influenzae [TaxId: 727]

Probab=96.76  E-value=0.00091  Score=45.35  Aligned_cols=27  Identities=26%  Similarity=0.391  Sum_probs=23.7

Q ss_pred             CCeeEEEEEecCCCcHHHHHHHHHHHh
Q 039455           47 DDVRFIGICGMGGIGKTTLAKVLYNTL   73 (216)
Q Consensus        47 ~~~~~i~I~G~~GiGKTtL~~~~~~~~   73 (216)
                      ..+-+|.+.|+=|+||||+++.++..+
T Consensus        31 ~~g~ii~L~G~LGaGKTtfvr~~~~~l   57 (158)
T d1htwa_          31 EKAIMVYLNGDLGAGKTTLTRGMLQGI   57 (158)
T ss_dssp             SSCEEEEEECSTTSSHHHHHHHHHHHT
T ss_pred             CCCeEEEEecCCCccHHHHHHHHHhhc
Confidence            345689999999999999999999864

>d1xtqa1 c.37.1.8 (A:3-169) GTP-binding protein RheB {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein RheB
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.75  E-value=0.00055  Score=46.74  Aligned_cols=23  Identities=30%  Similarity=0.463  Sum_probs=20.4

Q ss_pred             eeEEEEEecCCCcHHHHHHHHHH
Q 039455           49 VRFIGICGMGGIGKTTLAKVLYN   71 (216)
Q Consensus        49 ~~~i~I~G~~GiGKTtL~~~~~~   71 (216)
                      ..-|+|.|.+|+|||+|+..+.+
T Consensus         4 ~~Kv~liG~~~vGKTsLl~~~~~   26 (167)
T d1xtqa1           4 SRKIAILGYRSVGKSSLTIQFVE   26 (167)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHH
T ss_pred             ceEEEEECCCCcCHHHHHHHHHh
Confidence            45688999999999999999875

>d2atva1 c.37.1.8 (A:5-172) Ras-like estrogen-regulated growth inhibitor, RERG {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-like estrogen-regulated growth inhibitor, RERG
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.74  E-value=0.00043  Score=47.44  Aligned_cols=22  Identities=27%  Similarity=0.504  Sum_probs=19.6

Q ss_pred             EEEEEecCCCcHHHHHHHHHHH
Q 039455           51 FIGICGMGGIGKTTLAKVLYNT   72 (216)
Q Consensus        51 ~i~I~G~~GiGKTtL~~~~~~~   72 (216)
                      -|+|+|.+|+|||+|+..+.+.
T Consensus         4 Ki~lvG~~~vGKTsli~r~~~~   25 (168)
T d2atva1           4 KLAIFGRAGVGKSALVVRFLTK   25 (168)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHHhC
Confidence            4789999999999999999873

>d1tuea_ c.37.1.20 (A:) Replication protein E1 helicase domain {Human papillomavirus type 18 [TaxId: 333761]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication protein E1 helicase domain
species: Human papillomavirus type 18 [TaxId: 333761]

Probab=96.74  E-value=0.00086  Score=47.23  Aligned_cols=42  Identities=12%  Similarity=0.325  Sum_probs=33.8

Q ss_pred             hhHHHHHHHHHhcCCCCeeEEEEEecCCCcHHHHHHHHHHHhc
Q 039455           32 ASRMEKMNGYLEAGLDDVRFIGICGMGGIGKTTLAKVLYNTLK   74 (216)
Q Consensus        32 ~~~~~~l~~~l~~~~~~~~~i~I~G~~GiGKTtL~~~~~~~~~   74 (216)
                      -..+..+..+|.. .++...++++||+++|||+++..+++.+.
T Consensus        37 ~~Fl~~l~~~l~~-~PKkn~i~~~GP~~TGKS~f~~sl~~~l~   78 (205)
T d1tuea_          37 ITFLGALKSFLKG-TPKKNCLVFCGPANTGKSYFGMSFIHFIQ   78 (205)
T ss_dssp             HHHHHHHHHHHHT-CTTCSEEEEESCGGGCHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHcC-CCCceEEEEECCCCccHHHHHHHHHHHhC
Confidence            3566667777754 46779999999999999999999988764

>d1z06a1 c.37.1.8 (A:32-196) Rab-33b {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-33b
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.74  E-value=0.00044  Score=47.09  Aligned_cols=21  Identities=29%  Similarity=0.306  Sum_probs=19.2

Q ss_pred             EEEEEecCCCcHHHHHHHHHH
Q 039455           51 FIGICGMGGIGKTTLAKVLYN   71 (216)
Q Consensus        51 ~i~I~G~~GiGKTtL~~~~~~   71 (216)
                      -|+|.|.+|+|||+|+..+..
T Consensus         4 Kv~liG~~~vGKTsLl~~~~~   24 (165)
T d1z06a1           4 KIIVIGDSNVGKTCLTYRFCA   24 (165)
T ss_dssp             EEEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHHHh
Confidence            478999999999999999986

>d1yzqa1 c.37.1.8 (A:14-177) Rab6 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab6
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.73  E-value=0.00046  Score=46.95  Aligned_cols=20  Identities=25%  Similarity=0.361  Sum_probs=18.6

Q ss_pred             EEEEecCCCcHHHHHHHHHH
Q 039455           52 IGICGMGGIGKTTLAKVLYN   71 (216)
Q Consensus        52 i~I~G~~GiGKTtL~~~~~~   71 (216)
                      |+|.|.+|+|||+|++.+.+
T Consensus         3 v~vvG~~~vGKTsLi~r~~~   22 (164)
T d1yzqa1           3 LVFLGEQSVGKTSLITRFMY   22 (164)
T ss_dssp             EEEEESTTSSHHHHHHHHHH
T ss_pred             EEEECCCCcCHHHHHHHHHh
Confidence            78899999999999999986

>d1g41a_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: HslU
species: Haemophilus influenzae [TaxId: 727]

Probab=96.73  E-value=0.001  Score=52.96  Aligned_cols=49  Identities=22%  Similarity=0.207  Sum_probs=34.8

Q ss_pred             ccccccchhHHHHHHHHHh--------cC----CCCeeEEEEEecCCCcHHHHHHHHHHHh
Q 039455           25 VDGLVGIASRMEKMNGYLE--------AG----LDDVRFIGICGMGGIGKTTLAKVLYNTL   73 (216)
Q Consensus        25 ~~~~vgR~~~~~~l~~~l~--------~~----~~~~~~i~I~G~~GiGKTtL~~~~~~~~   73 (216)
                      ..+.||-++..+.+--.+.        ..    .-..+.|++.||+|+|||-||+.++..+
T Consensus        13 d~yVvGQ~~AKk~lsvav~nhyrR~~~~~~~~~ei~ksNILliGPTGvGKTlLAr~LAk~l   73 (443)
T d1g41a_          13 DQHIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKLA   73 (443)
T ss_dssp             HTTCCSCHHHHHHHHHHHHHHHHHHHSCTTTTTTCCCCCEEEECCTTSSHHHHHHHHHHHT
T ss_pred             cCcccCcHHHHHHHHHHHHHHHHHhhcccccccccccccEEEECCCCCCHHHHHHHHHHHh
Confidence            3567787777776643331        11    1125689999999999999999999865

>d1z08a1 c.37.1.8 (A:17-183) Rab21 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab21
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.73  E-value=0.00044  Score=47.27  Aligned_cols=21  Identities=29%  Similarity=0.387  Sum_probs=19.1

Q ss_pred             EEEEEecCCCcHHHHHHHHHH
Q 039455           51 FIGICGMGGIGKTTLAKVLYN   71 (216)
Q Consensus        51 ~i~I~G~~GiGKTtL~~~~~~   71 (216)
                      -|+|+|.+|+|||+|+..+..
T Consensus         5 KivlvG~~~vGKTsLi~r~~~   25 (167)
T d1z08a1           5 KVVLLGEGCVGKTSLVLRYCE   25 (167)
T ss_dssp             EEEEECCTTSCHHHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHHHh
Confidence            478999999999999999876

>d1ksha_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL2 [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Mouse (Mus musculus), ARL2 [TaxId: 10090]

Probab=96.73  E-value=0.00039  Score=47.38  Aligned_cols=21  Identities=29%  Similarity=0.385  Sum_probs=19.1

Q ss_pred             EEEEEecCCCcHHHHHHHHHH
Q 039455           51 FIGICGMGGIGKTTLAKVLYN   71 (216)
Q Consensus        51 ~i~I~G~~GiGKTtL~~~~~~   71 (216)
                      .|+|+|++|+|||||+..+.+
T Consensus         4 ki~ivG~~~~GKTsLi~~l~~   24 (165)
T d1ksha_           4 RLLMLGLDNAGKTTILKKFNG   24 (165)
T ss_dssp             EEEEECSTTSSHHHHHHHHTT
T ss_pred             EEEEECCCCCCHHHHHHHHcC
Confidence            588999999999999999865

>d2erya1 c.37.1.8 (A:10-180) r-Ras2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: r-Ras2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.73  E-value=0.00047  Score=47.35  Aligned_cols=21  Identities=29%  Similarity=0.536  Sum_probs=19.3

Q ss_pred             EEEEEecCCCcHHHHHHHHHH
Q 039455           51 FIGICGMGGIGKTTLAKVLYN   71 (216)
Q Consensus        51 ~i~I~G~~GiGKTtL~~~~~~   71 (216)
                      -|+|+|.+|+|||+|+..+..
T Consensus         7 Ki~lvG~~~vGKTsLi~r~~~   27 (171)
T d2erya1           7 RLVVVGGGGVGKSALTIQFIQ   27 (171)
T ss_dssp             EEEEEECTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHh
Confidence            588999999999999999876

>d1mkya1 c.37.1.8 (A:2-172) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase Der, N-terminal and middle domains
species: Thermotoga maritima [TaxId: 2336]

Probab=96.73  E-value=0.0004  Score=47.68  Aligned_cols=21  Identities=33%  Similarity=0.407  Sum_probs=19.5

Q ss_pred             EEEEEecCCCcHHHHHHHHHH
Q 039455           51 FIGICGMGGIGKTTLAKVLYN   71 (216)
Q Consensus        51 ~i~I~G~~GiGKTtL~~~~~~   71 (216)
                      .|+|.|.+|+|||||++.+.+
T Consensus         2 ~V~liG~~n~GKSsLi~~L~~   22 (171)
T d1mkya1           2 TVLIVGRPNVGKSTLFNKLVK   22 (171)
T ss_dssp             EEEEECCTTSSHHHHHHHHHC
T ss_pred             EEEEECCCCCCHHHHHHHHhC
Confidence            689999999999999999975

>d2ocpa1 c.37.1.1 (A:37-277) Deoxyguanosine kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxyguanosine kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.72  E-value=0.00066  Score=49.24  Aligned_cols=27  Identities=33%  Similarity=0.443  Sum_probs=23.8

Q ss_pred             eeEEEEEecCCCcHHHHHHHHHHHhcC
Q 039455           49 VRFIGICGMGGIGKTTLAKVLYNTLKD   75 (216)
Q Consensus        49 ~~~i~I~G~~GiGKTtL~~~~~~~~~~   75 (216)
                      ++.|+|-|+-|+||||+++.+...+..
T Consensus         2 pk~IviEG~~GsGKST~~~~L~~~l~~   28 (241)
T d2ocpa1           2 PRRLSIEGNIAVGKSTFVKLLTKTYPE   28 (241)
T ss_dssp             CEEEEEEECTTSSHHHHHHHHHHHCTT
T ss_pred             CeEEEEECCCCCcHHHHHHHHHHHHhh
Confidence            478999999999999999999987654

>d1ky3a_ c.37.1.8 (A:) Rab-related protein ypt7p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-related protein ypt7p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.72  E-value=0.00045  Score=47.51  Aligned_cols=21  Identities=38%  Similarity=0.475  Sum_probs=19.2

Q ss_pred             EEEEEecCCCcHHHHHHHHHH
Q 039455           51 FIGICGMGGIGKTTLAKVLYN   71 (216)
Q Consensus        51 ~i~I~G~~GiGKTtL~~~~~~   71 (216)
                      -|+|+|.+|+|||||+..+.+
T Consensus         4 Ki~~vG~~~vGKSsLi~~~~~   24 (175)
T d1ky3a_           4 KVIILGDSGVGKTSLMHRYVN   24 (175)
T ss_dssp             EEEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHHHc
Confidence            488999999999999999875

>d1ko7a2 c.91.1.2 (A:130-298) HPr kinase HprK C-terminal domain {Staphylococcus xylosus [TaxId: 1288]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: HPr kinase HprK C-terminal domain
domain: HPr kinase HprK C-terminal domain
species: Staphylococcus xylosus [TaxId: 1288]

Probab=96.71  E-value=0.0006  Score=46.91  Aligned_cols=24  Identities=33%  Similarity=0.259  Sum_probs=21.4

Q ss_pred             eeEEEEEecCCCcHHHHHHHHHHH
Q 039455           49 VRFIGICGMGGIGKTTLAKVLYNT   72 (216)
Q Consensus        49 ~~~i~I~G~~GiGKTtL~~~~~~~   72 (216)
                      +..+.|.|++|+||||++..+..+
T Consensus        15 g~gvli~G~sg~GKS~la~~l~~~   38 (169)
T d1ko7a2          15 GVGVLITGDSGIGKSETALELIKR   38 (169)
T ss_dssp             TEEEEEEESTTSSHHHHHHHHHHT
T ss_pred             CEEEEEEeCCCCCHHHHHHHHHHc
Confidence            478999999999999999888764

>d1g16a_ c.37.1.8 (A:) Rab-related protein Sec4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-related protein Sec4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.71  E-value=0.00049  Score=46.95  Aligned_cols=21  Identities=29%  Similarity=0.373  Sum_probs=19.2

Q ss_pred             EEEEEecCCCcHHHHHHHHHH
Q 039455           51 FIGICGMGGIGKTTLAKVLYN   71 (216)
Q Consensus        51 ~i~I~G~~GiGKTtL~~~~~~   71 (216)
                      -|++.|.+|+|||||+..+..
T Consensus         4 Ki~vvG~~~vGKTSli~~l~~   24 (166)
T d1g16a_           4 KILLIGDSGVGKSCLLVRFVE   24 (166)
T ss_dssp             EEEEEESTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHHHh
Confidence            478999999999999999876

>d2afhe1 c.37.1.10 (E:1-289) Nitrogenase iron protein {Azotobacter vinelandii [TaxId: 354]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Nitrogenase iron protein
species: Azotobacter vinelandii [TaxId: 354]

Probab=96.71  E-value=0.00076  Score=50.44  Aligned_cols=35  Identities=31%  Similarity=0.428  Sum_probs=26.6

Q ss_pred             eEEEEEecCCCcHHHHHHHHHHHhcCCCCceEeec
Q 039455           50 RFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLA   84 (216)
Q Consensus        50 ~~i~I~G~~GiGKTtL~~~~~~~~~~~~~~~~~~~   84 (216)
                      +.|+|+|-||+||||++-.++..+.+....+..++
T Consensus         3 r~IaisgKGGVGKTT~a~NLA~~LA~~G~rVLlID   37 (289)
T d2afhe1           3 RQCAIYGKGGIGKSTTTQNLVAALAEMGKKVMIVG   37 (289)
T ss_dssp             EEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred             cEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEe
Confidence            46778999999999999998886655544455554

>d2fh5b1 c.37.1.8 (B:63-269) Signal recognition particle receptor beta-subunit {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Signal recognition particle receptor beta-subunit
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.70  E-value=0.0005  Score=48.74  Aligned_cols=22  Identities=32%  Similarity=0.324  Sum_probs=20.1

Q ss_pred             eEEEEEecCCCcHHHHHHHHHH
Q 039455           50 RFIGICGMGGIGKTTLAKVLYN   71 (216)
Q Consensus        50 ~~i~I~G~~GiGKTtL~~~~~~   71 (216)
                      +.|+|.|++|+|||||+..+..
T Consensus         1 k~V~ivG~~~~GKTsLl~~l~~   22 (207)
T d2fh5b1           1 RAVLFVGLCDSGKTLLFVRLLT   22 (207)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHc
Confidence            3689999999999999999986

>d2fn4a1 c.37.1.8 (A:24-196) r-Ras {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: r-Ras
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.69  E-value=0.00052  Score=47.26  Aligned_cols=23  Identities=26%  Similarity=0.496  Sum_probs=20.4

Q ss_pred             eeEEEEEecCCCcHHHHHHHHHH
Q 039455           49 VRFIGICGMGGIGKTTLAKVLYN   71 (216)
Q Consensus        49 ~~~i~I~G~~GiGKTtL~~~~~~   71 (216)
                      .--|+|+|.+|+|||+|+..+..
T Consensus         6 ~~Kv~lvG~~~vGKTsLi~r~~~   28 (173)
T d2fn4a1           6 THKLVVVGGGGVGKSALTIQFIQ   28 (173)
T ss_dssp             EEEEEEEECTTSSHHHHHHHHHH
T ss_pred             eEEEEEECCCCcCHHHHHHHHHh
Confidence            45688999999999999999876

>d2erxa1 c.37.1.8 (A:6-176) di-Ras2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: di-Ras2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.68  E-value=0.00044  Score=47.43  Aligned_cols=21  Identities=29%  Similarity=0.626  Sum_probs=18.7

Q ss_pred             EEEEEecCCCcHHHHHHHHHH
Q 039455           51 FIGICGMGGIGKTTLAKVLYN   71 (216)
Q Consensus        51 ~i~I~G~~GiGKTtL~~~~~~   71 (216)
                      -|+|.|.+|+|||||+..+..
T Consensus         4 Ki~viG~~~vGKTsLi~r~~~   24 (171)
T d2erxa1           4 RVAVFGAGGVGKSSLVLRFVK   24 (171)
T ss_dssp             EEEEECCTTSSHHHHHHHHHT
T ss_pred             EEEEECCCCCCHHHHHHHHHh
Confidence            367899999999999999876

>d1ctqa_ c.37.1.8 (A:) cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: cH-p21 Ras protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.68  E-value=0.00053  Score=46.80  Aligned_cols=21  Identities=33%  Similarity=0.610  Sum_probs=19.1

Q ss_pred             EEEEEecCCCcHHHHHHHHHH
Q 039455           51 FIGICGMGGIGKTTLAKVLYN   71 (216)
Q Consensus        51 ~i~I~G~~GiGKTtL~~~~~~   71 (216)
                      -|+|.|.+|+|||+|+..+.+
T Consensus         5 Ki~viG~~~vGKTsli~~l~~   25 (166)
T d1ctqa_           5 KLVVVGAGGVGKSALTIQLIQ   25 (166)
T ss_dssp             EEEEEESTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHh
Confidence            478999999999999999886

>d1deka_ c.37.1.1 (A:) Deoxynucleoside monophosphate kinase {Bacteriophage T4 [TaxId: 10665]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxynucleoside monophosphate kinase
species: Bacteriophage T4 [TaxId: 10665]

Probab=96.68  E-value=0.0006  Score=49.53  Aligned_cols=23  Identities=26%  Similarity=0.417  Sum_probs=20.7

Q ss_pred             eEEEEEecCCCcHHHHHHHHHHH
Q 039455           50 RFIGICGMGGIGKTTLAKVLYNT   72 (216)
Q Consensus        50 ~~i~I~G~~GiGKTtL~~~~~~~   72 (216)
                      .+|+|+|..|+||||+|+.+...
T Consensus         2 ~iIgiTG~igSGKsTva~~l~e~   24 (241)
T d1deka_           2 KLIFLSGVKRSGKDTTADFIMSN   24 (241)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHH
T ss_pred             EEEEEECCCCCCHHHHHHHHHHh
Confidence            47999999999999999998764

>d1kmqa_ c.37.1.8 (A:) RhoA {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoA
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.67  E-value=0.00054  Score=47.29  Aligned_cols=22  Identities=36%  Similarity=0.369  Sum_probs=19.3

Q ss_pred             eEEEEEecCCCcHHHHHHHHHH
Q 039455           50 RFIGICGMGGIGKTTLAKVLYN   71 (216)
Q Consensus        50 ~~i~I~G~~GiGKTtL~~~~~~   71 (216)
                      .-|+|+|.+|+|||+|+..+.+
T Consensus         3 ~KivvvG~~~vGKTsLi~~~~~   24 (177)
T d1kmqa_           3 KKLVIVGDGACGKTCLLIVNSK   24 (177)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHH
T ss_pred             EEEEEECCCCcCHHHHHHHHHh
Confidence            3578899999999999999876

>d1z0ja1 c.37.1.8 (A:2-168) Rab-22a {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-22a
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.66  E-value=0.00053  Score=46.86  Aligned_cols=21  Identities=19%  Similarity=0.359  Sum_probs=19.1

Q ss_pred             EEEEEecCCCcHHHHHHHHHH
Q 039455           51 FIGICGMGGIGKTTLAKVLYN   71 (216)
Q Consensus        51 ~i~I~G~~GiGKTtL~~~~~~   71 (216)
                      -|+|+|.+|+|||+|+..+.+
T Consensus         6 Ki~lvG~~~vGKTsli~rl~~   26 (167)
T d1z0ja1           6 KVCLLGDTGVGKSSIMWRFVE   26 (167)
T ss_dssp             EEEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHHHh
Confidence            478899999999999999986

>d1mh1a_ c.37.1.8 (A:) Rac {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rac
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.66  E-value=0.00069  Score=47.02  Aligned_cols=26  Identities=23%  Similarity=0.229  Sum_probs=21.9

Q ss_pred             CCeeEEEEEecCCCcHHHHHHHHHHH
Q 039455           47 DDVRFIGICGMGGIGKTTLAKVLYNT   72 (216)
Q Consensus        47 ~~~~~i~I~G~~GiGKTtL~~~~~~~   72 (216)
                      ++.--|+|+|.+|+|||+|+..+...
T Consensus         3 p~~iKivviG~~~vGKTsli~~~~~~   28 (183)
T d1mh1a_           3 PQAIKCVVVGDGAVGKTCLLISYTTN   28 (183)
T ss_dssp             CEEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred             ceeEEEEEECCCCCCHHHHHHHHHhC
Confidence            34457899999999999999998863

>d1r2qa_ c.37.1.8 (A:) Rab5a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab5a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.66  E-value=0.00054  Score=46.98  Aligned_cols=21  Identities=19%  Similarity=0.328  Sum_probs=19.1

Q ss_pred             EEEEEecCCCcHHHHHHHHHH
Q 039455           51 FIGICGMGGIGKTTLAKVLYN   71 (216)
Q Consensus        51 ~i~I~G~~GiGKTtL~~~~~~   71 (216)
                      -|+|+|.+|+|||+|+..+.+
T Consensus         8 Ki~vvG~~~vGKTsLi~~l~~   28 (170)
T d1r2qa_           8 KLVLLGESAVGKSSLVLRFVK   28 (170)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHHHh
Confidence            478999999999999999986

>d2f9la1 c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab11b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.63  E-value=0.00057  Score=47.12  Aligned_cols=21  Identities=24%  Similarity=0.398  Sum_probs=19.2

Q ss_pred             EEEEEecCCCcHHHHHHHHHH
Q 039455           51 FIGICGMGGIGKTTLAKVLYN   71 (216)
Q Consensus        51 ~i~I~G~~GiGKTtL~~~~~~   71 (216)
                      -|+|.|.+|+|||||+..+.+
T Consensus         6 Ki~vvG~~~vGKTsLi~~~~~   26 (175)
T d2f9la1           6 KVVLIGDSGVGKSNLLSRFTR   26 (175)
T ss_dssp             EEEEESSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHHHh
Confidence            488999999999999999876

>d1c1ya_ c.37.1.8 (A:) Rap1A {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rap1A
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.63  E-value=0.00059  Score=46.63  Aligned_cols=21  Identities=29%  Similarity=0.544  Sum_probs=19.1

Q ss_pred             EEEEEecCCCcHHHHHHHHHH
Q 039455           51 FIGICGMGGIGKTTLAKVLYN   71 (216)
Q Consensus        51 ~i~I~G~~GiGKTtL~~~~~~   71 (216)
                      -|+|+|.+|+|||+|+..+..
T Consensus         5 KivvvG~~~vGKTsli~r~~~   25 (167)
T d1c1ya_           5 KLVVLGSGGVGKSALTVQFVQ   25 (167)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHc
Confidence            478999999999999999886

>d2fz4a1 c.37.1.19 (A:24-229) DNA repair protein RAD25 {Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: DNA repair protein RAD25
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=96.62  E-value=0.049  Score=38.08  Aligned_cols=45  Identities=20%  Similarity=0.094  Sum_probs=33.0

Q ss_pred             ccccccchhHHHHHHHHHhcCCCCeeEEEEEecCCCcHHHHHHHHHHHhc
Q 039455           25 VDGLVGIASRMEKMNGYLEAGLDDVRFIGICGMGGIGKTTLAKVLYNTLK   74 (216)
Q Consensus        25 ~~~~vgR~~~~~~l~~~l~~~~~~~~~i~I~G~~GiGKTtL~~~~~~~~~   74 (216)
                      ...+--|+-+.+.+..++..     ...+|.++.|+|||.++..++.+..
T Consensus        66 ~~~~~Lr~yQ~eav~~~~~~-----~~~ll~~~tG~GKT~~a~~~~~~~~  110 (206)
T d2fz4a1          66 DAEISLRDYQEKALERWLVD-----KRGCIVLPTGSGKTHVAMAAINELS  110 (206)
T ss_dssp             CCCCCCCHHHHHHHHHHTTT-----SEEEEEESSSTTHHHHHHHHHHHSC
T ss_pred             CCCCCcCHHHHHHHHHHHhC-----CCcEEEeCCCCCceehHHhHHHHhc
Confidence            44566788787777776643     2345788999999999888877653

>d1ek0a_ c.37.1.8 (A:) Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ypt51
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.62  E-value=0.0006  Score=46.69  Aligned_cols=21  Identities=14%  Similarity=0.313  Sum_probs=19.2

Q ss_pred             EEEEEecCCCcHHHHHHHHHH
Q 039455           51 FIGICGMGGIGKTTLAKVLYN   71 (216)
Q Consensus        51 ~i~I~G~~GiGKTtL~~~~~~   71 (216)
                      -|+|+|.+|+|||+|+..+.+
T Consensus         5 Ki~vvG~~~vGKTsLi~~~~~   25 (170)
T d1ek0a_           5 KLVLLGEAAVGKSSIVLRFVS   25 (170)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHHHh
Confidence            578999999999999999886

>d2gjsa1 c.37.1.8 (A:91-258) Rad {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rad
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.60  E-value=0.00055  Score=46.90  Aligned_cols=21  Identities=29%  Similarity=0.528  Sum_probs=18.7

Q ss_pred             EEEEEecCCCcHHHHHHHHHH
Q 039455           51 FIGICGMGGIGKTTLAKVLYN   71 (216)
Q Consensus        51 ~i~I~G~~GiGKTtL~~~~~~   71 (216)
                      -|+|.|.+|+|||+|+..+.+
T Consensus         3 Ki~lvG~~~vGKTsLi~~~~~   23 (168)
T d2gjsa1           3 KVLLLGAPGVGKSALARIFGG   23 (168)
T ss_dssp             EEEEECCTTSSHHHHHHHHHT
T ss_pred             EEEEECCCCcCHHHHHHHHhC
Confidence            378899999999999999875

>d1nija1 c.37.1.10 (A:2-223) Hypothetical protein YjiA, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Hypothetical protein YjiA, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=96.60  E-value=0.00071  Score=48.75  Aligned_cols=25  Identities=32%  Similarity=0.449  Sum_probs=22.6

Q ss_pred             CeeEEEEEecCCCcHHHHHHHHHHH
Q 039455           48 DVRFIGICGMGGIGKTTLAKVLYNT   72 (216)
Q Consensus        48 ~~~~i~I~G~~GiGKTtL~~~~~~~   72 (216)
                      ..++.+|+|.-|+|||||++.+...
T Consensus         2 ~iPv~iitGFLGaGKTTll~~lL~~   26 (222)
T d1nija1           2 PIAVTLLTGFLGAGKTTLLRHILNE   26 (222)
T ss_dssp             CEEEEEEEESSSSSCHHHHHHHHHS
T ss_pred             CCCEEEEeeCCCCCHHHHHHHHHhc
Confidence            4689999999999999999999875

>d2g6ba1 c.37.1.8 (A:58-227) Rab26 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab26
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.59  E-value=0.00064  Score=46.58  Aligned_cols=21  Identities=29%  Similarity=0.411  Sum_probs=19.2

Q ss_pred             EEEEEecCCCcHHHHHHHHHH
Q 039455           51 FIGICGMGGIGKTTLAKVLYN   71 (216)
Q Consensus        51 ~i~I~G~~GiGKTtL~~~~~~   71 (216)
                      -|+|+|.+|+|||+|++.+..
T Consensus         8 Ki~vvG~~~vGKTsli~~~~~   28 (170)
T d2g6ba1           8 KVMLVGDSGVGKTCLLVRFKD   28 (170)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHHHh
Confidence            489999999999999999876

>d1cr2a_ c.37.1.11 (A:) Gene 4 protein (g4p, DNA primase), helicase domain {Bacteriophage T7 [TaxId: 10760]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Gene 4 protein (g4p, DNA primase), helicase domain
species: Bacteriophage T7 [TaxId: 10760]

Probab=96.59  E-value=0.0028  Score=46.81  Aligned_cols=27  Identities=19%  Similarity=0.201  Sum_probs=23.3

Q ss_pred             CCeeEEEEEecCCCcHHHHHHHHHHHh
Q 039455           47 DDVRFIGICGMGGIGKTTLAKVLYNTL   73 (216)
Q Consensus        47 ~~~~~i~I~G~~GiGKTtL~~~~~~~~   73 (216)
                      ..+.+++|.|++|+|||+++..++..+
T Consensus        33 ~~G~l~vi~G~~G~GKT~~~~~la~~~   59 (277)
T d1cr2a_          33 RGGEVIMVTSGSGMGKSTFVRQQALQW   59 (277)
T ss_dssp             CTTCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             CCCeEEEEEeCCCCCHHHHHHHHHHhh
Confidence            345799999999999999999998754

>d2bmea1 c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab4a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.59  E-value=0.00067  Score=46.63  Aligned_cols=21  Identities=24%  Similarity=0.336  Sum_probs=19.1

Q ss_pred             EEEEEecCCCcHHHHHHHHHH
Q 039455           51 FIGICGMGGIGKTTLAKVLYN   71 (216)
Q Consensus        51 ~i~I~G~~GiGKTtL~~~~~~   71 (216)
                      -|+|.|.+|+|||+|+..+..
T Consensus         7 KI~lvG~~~vGKTsll~~~~~   27 (174)
T d2bmea1           7 KFLVIGNAGTGKSCLLHQFIE   27 (174)
T ss_dssp             EEEEEESTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHHHh
Confidence            488999999999999999875

>d1zd9a1 c.37.1.8 (A:18-181) ADP-ribosylation factor {Human (Homo sapiens), ARL8A [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL8A [TaxId: 9606]

Probab=96.58  E-value=0.00067  Score=46.19  Aligned_cols=21  Identities=29%  Similarity=0.411  Sum_probs=18.8

Q ss_pred             EEEEEecCCCcHHHHHHHHHH
Q 039455           51 FIGICGMGGIGKTTLAKVLYN   71 (216)
Q Consensus        51 ~i~I~G~~GiGKTtL~~~~~~   71 (216)
                      -|++.|++|+|||||+..+..
T Consensus         4 ki~i~G~~~~GKTsLl~~l~~   24 (164)
T d1zd9a1           4 ELTLVGLQYSGKTTFVNVIAS   24 (164)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHc
Confidence            577899999999999999876

>d1wf3a1 c.37.1.8 (A:3-180) GTPase Era, N-terminal domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Era, N-terminal domain
species: Thermus thermophilus [TaxId: 274]

Probab=96.58  E-value=0.00073  Score=46.65  Aligned_cols=24  Identities=33%  Similarity=0.546  Sum_probs=21.5

Q ss_pred             eeEEEEEecCCCcHHHHHHHHHHH
Q 039455           49 VRFIGICGMGGIGKTTLAKVLYNT   72 (216)
Q Consensus        49 ~~~i~I~G~~GiGKTtL~~~~~~~   72 (216)
                      .+.|+|+|.+|+|||||++.+.+.
T Consensus         5 ~~~I~lvG~~~~GKSSLin~l~~~   28 (178)
T d1wf3a1           5 SGFVAIVGKPNVGKSTLLNNLLGV   28 (178)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHTS
T ss_pred             CcEEEEECCCCCCHHHHHHHHhCC
Confidence            458999999999999999999864

>d1w36d1 c.37.1.19 (D:2-360) Exodeoxyribonuclease V alpha chain (RecD) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: Exodeoxyribonuclease V alpha chain (RecD)
species: Escherichia coli [TaxId: 562]

Probab=96.56  E-value=0.0012  Score=51.08  Aligned_cols=25  Identities=40%  Similarity=0.401  Sum_probs=20.5

Q ss_pred             eeEEEEEecCCCcHHHHHHHHHHHh
Q 039455           49 VRFIGICGMGGIGKTTLAKVLYNTL   73 (216)
Q Consensus        49 ~~~i~I~G~~GiGKTtL~~~~~~~~   73 (216)
                      .+..+|+|++|+||||++..+...+
T Consensus       163 ~~~~vI~G~pGTGKTt~i~~~l~~l  187 (359)
T d1w36d1         163 RRISVISGGPGTGKTTTVAKLLAAL  187 (359)
T ss_dssp             BSEEEEECCTTSTHHHHHHHHHHHH
T ss_pred             CCeEEEEcCCCCCceehHHHHHHHH
Confidence            3799999999999999987765433

>d1vg8a_ c.37.1.8 (A:) Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab7
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=96.56  E-value=0.00068  Score=47.08  Aligned_cols=21  Identities=38%  Similarity=0.487  Sum_probs=19.2

Q ss_pred             EEEEEecCCCcHHHHHHHHHH
Q 039455           51 FIGICGMGGIGKTTLAKVLYN   71 (216)
Q Consensus        51 ~i~I~G~~GiGKTtL~~~~~~   71 (216)
                      -|+|+|.+|+|||||+..+.+
T Consensus         4 Kv~vvG~~~vGKSSLi~~l~~   24 (184)
T d1vg8a_           4 KVIILGDSGVGKTSLMNQYVN   24 (184)
T ss_dssp             EEEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHHHh
Confidence            478999999999999999886

>d1byia_ c.37.1.10 (A:) Dethiobiotin synthetase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Dethiobiotin synthetase
species: Escherichia coli [TaxId: 562]

Probab=96.56  E-value=0.0012  Score=46.77  Aligned_cols=35  Identities=17%  Similarity=0.092  Sum_probs=28.5

Q ss_pred             eEEEEEecC-CCcHHHHHHHHHHHhcCCCCceEeec
Q 039455           50 RFIGICGMG-GIGKTTLAKVLYNTLKDQFEASSFLA   84 (216)
Q Consensus        50 ~~i~I~G~~-GiGKTtL~~~~~~~~~~~~~~~~~~~   84 (216)
                      +.+.|+|.+ |+||||+.-.++..+.+....+..+.
T Consensus         2 ~~~~i~gt~~GVGKTtvs~~La~aLa~~G~rVl~id   37 (224)
T d1byia_           2 KRYFVTGTDTEVGKTVASCALLQAAKAAGYRTAGYK   37 (224)
T ss_dssp             EEEEEEESSTTSCHHHHHHHHHHHHHHTTCCEEEEC
T ss_pred             ceEEEEECCCCccHHHHHHHHHHHHHHCCCeEEEEC
Confidence            578999998 99999999999998776655555554

>d2f7sa1 c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab27b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.55  E-value=0.00054  Score=47.67  Aligned_cols=21  Identities=29%  Similarity=0.292  Sum_probs=18.8

Q ss_pred             EEEEEecCCCcHHHHHHHHHH
Q 039455           51 FIGICGMGGIGKTTLAKVLYN   71 (216)
Q Consensus        51 ~i~I~G~~GiGKTtL~~~~~~   71 (216)
                      -|+|.|.+|+|||||+..+.+
T Consensus         7 Ki~ivG~~~vGKTsLi~~l~~   27 (186)
T d2f7sa1           7 KLLALGDSGVGKTTFLYRYTD   27 (186)
T ss_dssp             EEEEESCTTSSHHHHHHHHHC
T ss_pred             EEEEECCCCcCHHHHHHHHhc
Confidence            478999999999999998875

>d2cxxa1 c.37.1.8 (A:2-185) GTP-binding protein engB {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein engB
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=96.54  E-value=0.00064  Score=47.00  Aligned_cols=21  Identities=33%  Similarity=0.366  Sum_probs=19.6

Q ss_pred             EEEEEecCCCcHHHHHHHHHH
Q 039455           51 FIGICGMGGIGKTTLAKVLYN   71 (216)
Q Consensus        51 ~i~I~G~~GiGKTtL~~~~~~   71 (216)
                      .|+|+|.+|+|||||+..+.+
T Consensus         2 ~I~lvG~~nvGKSsLin~l~~   22 (184)
T d2cxxa1           2 TIIFAGRSNVGKSTLIYRLTG   22 (184)
T ss_dssp             EEEEEEBTTSSHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHhC
Confidence            589999999999999999986

>d2bcgy1 c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Ytp1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.53  E-value=0.00075  Score=47.37  Aligned_cols=21  Identities=24%  Similarity=0.368  Sum_probs=19.2

Q ss_pred             EEEEEecCCCcHHHHHHHHHH
Q 039455           51 FIGICGMGGIGKTTLAKVLYN   71 (216)
Q Consensus        51 ~i~I~G~~GiGKTtL~~~~~~   71 (216)
                      -|+|.|.+|+|||||+..+.+
T Consensus         8 KivvvG~~~vGKTsli~~l~~   28 (194)
T d2bcgy1           8 KLLLIGNSGVGKSCLLLRFSD   28 (194)
T ss_dssp             EEEEEESTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHHhh
Confidence            478999999999999999986

>d2gj8a1 c.37.1.8 (A:216-376) Probable tRNA modification GTPase TrmE (MnmE), G domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable tRNA modification GTPase TrmE (MnmE), G domain
species: Escherichia coli [TaxId: 562]

Probab=96.51  E-value=0.00071  Score=45.74  Aligned_cols=21  Identities=29%  Similarity=0.360  Sum_probs=19.4

Q ss_pred             EEEEEecCCCcHHHHHHHHHH
Q 039455           51 FIGICGMGGIGKTTLAKVLYN   71 (216)
Q Consensus        51 ~i~I~G~~GiGKTtL~~~~~~   71 (216)
                      .|+|+|.+|+|||||+..+.+
T Consensus         3 kI~lvG~~nvGKSsLin~l~~   23 (161)
T d2gj8a1           3 KVVIAGRPNAGKSSLLNALAG   23 (161)
T ss_dssp             EEEEEESTTSSHHHHHHHHHT
T ss_pred             EEEEECCCCCCHHHHHHHHhC
Confidence            588999999999999999985

>d1wmsa_ c.37.1.8 (A:) Rab9a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab9a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.51  E-value=0.00077  Score=46.33  Aligned_cols=21  Identities=29%  Similarity=0.490  Sum_probs=19.1

Q ss_pred             EEEEEecCCCcHHHHHHHHHH
Q 039455           51 FIGICGMGGIGKTTLAKVLYN   71 (216)
Q Consensus        51 ~i~I~G~~GiGKTtL~~~~~~   71 (216)
                      -|+|+|.+|+|||||+..+.+
T Consensus         8 KI~vvG~~~vGKSSli~~~~~   28 (174)
T d1wmsa_           8 KVILLGDGGVGKSSLMNRYVT   28 (174)
T ss_dssp             EEEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHh
Confidence            388999999999999998876

>d1u8za_ c.37.1.8 (A:) Ras-related protein RalA {Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-related protein RalA
species: Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]

Probab=96.48  E-value=0.00084  Score=45.95  Aligned_cols=21  Identities=29%  Similarity=0.518  Sum_probs=19.1

Q ss_pred             EEEEEecCCCcHHHHHHHHHH
Q 039455           51 FIGICGMGGIGKTTLAKVLYN   71 (216)
Q Consensus        51 ~i~I~G~~GiGKTtL~~~~~~   71 (216)
                      -|+|+|.+|+|||+|+..+..
T Consensus         6 KivlvG~~~vGKTsli~~~~~   26 (168)
T d1u8za_           6 KVIMVGSGGVGKSALTLQFMY   26 (168)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHHHh
Confidence            578999999999999999875

>d2atxa1 c.37.1.8 (A:9-193) RhoQ {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoQ
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.48  E-value=0.00086  Score=46.68  Aligned_cols=21  Identities=33%  Similarity=0.366  Sum_probs=19.2

Q ss_pred             EEEEEecCCCcHHHHHHHHHH
Q 039455           51 FIGICGMGGIGKTTLAKVLYN   71 (216)
Q Consensus        51 ~i~I~G~~GiGKTtL~~~~~~   71 (216)
                      -|+|.|.+|+|||+|+..+.+
T Consensus        11 Ki~lvG~~~vGKTsLi~r~~~   31 (185)
T d2atxa1          11 KCVVVGDGAVGKTCLLMSYAN   31 (185)
T ss_dssp             EEEEEECTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHhh
Confidence            489999999999999999876

>d1m7ba_ c.37.1.8 (A:) RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoE (RND3)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.47  E-value=0.00087  Score=46.43  Aligned_cols=22  Identities=32%  Similarity=0.345  Sum_probs=19.5

Q ss_pred             EEEEEecCCCcHHHHHHHHHHH
Q 039455           51 FIGICGMGGIGKTTLAKVLYNT   72 (216)
Q Consensus        51 ~i~I~G~~GiGKTtL~~~~~~~   72 (216)
                      -|++.|.+|+|||+|+..+.+.
T Consensus         4 KivliG~~~vGKTsli~r~~~~   25 (179)
T d1m7ba_           4 KIVVVGDSQCGKTALLHVFAKD   25 (179)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCcCHHHHHHHHHhC
Confidence            4789999999999999998873

>d1u0ja_ c.37.1.20 (A:) Rep 40 protein helicase domain {Adeno-associated virus 2, AAV2 [TaxId: 10804]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Rep 40 protein helicase domain
species: Adeno-associated virus 2, AAV2 [TaxId: 10804]

Probab=96.47  E-value=0.0021  Score=47.51  Aligned_cols=38  Identities=21%  Similarity=0.301  Sum_probs=30.0

Q ss_pred             HHHHHHHhcCCCCeeEEEEEecCCCcHHHHHHHHHHHh
Q 039455           36 EKMNGYLEAGLDDVRFIGICGMGGIGKTTLAKVLYNTL   73 (216)
Q Consensus        36 ~~l~~~l~~~~~~~~~i~I~G~~GiGKTtL~~~~~~~~   73 (216)
                      ..+..+|....++...+.++|+++.|||+++..+...+
T Consensus        91 ~~l~~~L~~~~~k~n~~~l~G~~~tGKS~f~~~i~~~l  128 (267)
T d1u0ja_          91 SVFLGWATKKFGKRNTIWLFGPATTGKTNIAEAIAHTV  128 (267)
T ss_dssp             HHHHHHHTTCSTTCCEEEEECSTTSSHHHHHHHHHHHS
T ss_pred             HHHHHHHcCCCCccEEEEEEcCCCCCHHHHHHHHHHHh
Confidence            33444565555677899999999999999999998865

>d1x3sa1 c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab18
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.46  E-value=0.00086  Score=46.25  Aligned_cols=21  Identities=33%  Similarity=0.441  Sum_probs=19.2

Q ss_pred             EEEEEecCCCcHHHHHHHHHH
Q 039455           51 FIGICGMGGIGKTTLAKVLYN   71 (216)
Q Consensus        51 ~i~I~G~~GiGKTtL~~~~~~   71 (216)
                      -|+|+|.+|+|||+|+..+.+
T Consensus         9 Ki~vvG~~~vGKTsli~~l~~   29 (177)
T d1x3sa1           9 KILIIGESGVGKSSLLLRFTD   29 (177)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHHHh
Confidence            489999999999999999876

>d2ngra_ c.37.1.8 (A:) CDC42 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: CDC42
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.46  E-value=0.00089  Score=46.82  Aligned_cols=21  Identities=29%  Similarity=0.308  Sum_probs=19.0

Q ss_pred             EEEEEecCCCcHHHHHHHHHH
Q 039455           51 FIGICGMGGIGKTTLAKVLYN   71 (216)
Q Consensus        51 ~i~I~G~~GiGKTtL~~~~~~   71 (216)
                      -|+|.|.+|+|||+|+..+..
T Consensus         5 KvvllG~~~vGKTSli~r~~~   25 (191)
T d2ngra_           5 KCVVVGDGAVGKTCLLISYTT   25 (191)
T ss_dssp             EEEEEESTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHHHh
Confidence            578999999999999999876

>d1fx0a3 c.37.1.11 (A:97-372) Central domain of alpha subunit of F1 ATP synthase {Spinach (Spinacia oleracea), chloroplast [TaxId: 3562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Central domain of alpha subunit of F1 ATP synthase
species: Spinach (Spinacia oleracea), chloroplast [TaxId: 3562]

Probab=96.45  E-value=0.0045  Score=45.83  Aligned_cols=36  Identities=19%  Similarity=0.041  Sum_probs=25.7

Q ss_pred             CeeEEEEEecCCCcHHHHHHHHHHHhcCCCCceEee
Q 039455           48 DVRFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFL   83 (216)
Q Consensus        48 ~~~~i~I~G~~GiGKTtL~~~~~~~~~~~~~~~~~~   83 (216)
                      .+..++|.|++|+|||+|+.........+...+++.
T Consensus        66 ~GQr~~Ifg~~g~GKt~l~~~~~~~~~~~~~v~V~~  101 (276)
T d1fx0a3          66 RGQRELIIGDRQTGKTAVATDTILNQQGQNVICVYV  101 (276)
T ss_dssp             TTCBCBEEESSSSSHHHHHHHHHHTCCTTTCEEEEE
T ss_pred             CCceEeeccCCCCChHHHHHHHHhhhcccCceeeee
Confidence            456789999999999999988765444443344443

>d1x1ra1 c.37.1.8 (A:10-178) Ras-related protein M-Ras (XRas) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-related protein M-Ras (XRas)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.45  E-value=0.00089  Score=45.85  Aligned_cols=21  Identities=29%  Similarity=0.634  Sum_probs=18.8

Q ss_pred             EEEEEecCCCcHHHHHHHHHH
Q 039455           51 FIGICGMGGIGKTTLAKVLYN   71 (216)
Q Consensus        51 ~i~I~G~~GiGKTtL~~~~~~   71 (216)
                      -|++.|.+|+|||+|+..+.+
T Consensus         6 Ki~lvG~~~vGKTsll~~~~~   26 (169)
T d1x1ra1           6 KLVVVGDGGVGKSALTIQFFQ   26 (169)
T ss_dssp             EEEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHHHh
Confidence            467889999999999999986

>d1qhla_ c.37.1.12 (A:) Cell division protein MukB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Cell division protein MukB
species: Escherichia coli [TaxId: 562]

Probab=96.43  E-value=0.00017  Score=50.68  Aligned_cols=24  Identities=25%  Similarity=0.361  Sum_probs=20.1

Q ss_pred             eEEEEEecCCCcHHHHHHHHHHHh
Q 039455           50 RFIGICGMGGIGKTTLAKVLYNTL   73 (216)
Q Consensus        50 ~~i~I~G~~GiGKTtL~~~~~~~~   73 (216)
                      .+.+|+|++|+||||++.++..-+
T Consensus        25 ~~tvi~G~NGsGKStil~Ai~~~L   48 (222)
T d1qhla_          25 LVTTLSGGNGAGKSTTMAAFVTAL   48 (222)
T ss_dssp             HHHHHHSCCSHHHHHHHHHHHHHH
T ss_pred             CeEEEECCCCCCHHHHHHHHHHHh
Confidence            355688999999999999998644

>d2g3ya1 c.37.1.8 (A:73-244) GTP-binding protein GEM {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein GEM
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.40  E-value=0.00092  Score=45.93  Aligned_cols=21  Identities=33%  Similarity=0.570  Sum_probs=18.9

Q ss_pred             EEEEEecCCCcHHHHHHHHHH
Q 039455           51 FIGICGMGGIGKTTLAKVLYN   71 (216)
Q Consensus        51 ~i~I~G~~GiGKTtL~~~~~~   71 (216)
                      -|++.|.+|+|||+|+..+..
T Consensus         5 Kv~lvG~~~vGKTsLi~~~~~   25 (172)
T d2g3ya1           5 RVVLIGEQGVGKSTLANIFAG   25 (172)
T ss_dssp             EEEEECCTTSSHHHHHHHHHC
T ss_pred             EEEEECCCCcCHHHHHHHHHh
Confidence            478999999999999998875

>d1egaa1 c.37.1.8 (A:4-182) GTPase Era, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Era, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=96.36  E-value=0.0012  Score=45.42  Aligned_cols=23  Identities=39%  Similarity=0.600  Sum_probs=20.9

Q ss_pred             eeEEEEEecCCCcHHHHHHHHHH
Q 039455           49 VRFIGICGMGGIGKTTLAKVLYN   71 (216)
Q Consensus        49 ~~~i~I~G~~GiGKTtL~~~~~~   71 (216)
                      .+.|+|.|.+|+|||||++.+.+
T Consensus         5 ~~~I~iiG~~nvGKSSLin~L~~   27 (179)
T d1egaa1           5 CGFIAIVGRPNVGKSTLLNKLLG   27 (179)
T ss_dssp             EEEEEEECSSSSSHHHHHHHHHT
T ss_pred             ccEEEEECCCCCCHHHHHHHHhC
Confidence            45789999999999999999986

>d1osna_ c.37.1.1 (A:) Thymidine kinase {Varicella-zoster virus [TaxId: 10335]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidine kinase
species: Varicella-zoster virus [TaxId: 10335]

Probab=96.35  E-value=0.047  Score=41.26  Aligned_cols=34  Identities=26%  Similarity=0.199  Sum_probs=26.3

Q ss_pred             eEEEEEecCCCcHHHHHHHHHHHhcCCCCceEee
Q 039455           50 RFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFL   83 (216)
Q Consensus        50 ~~i~I~G~~GiGKTtL~~~~~~~~~~~~~~~~~~   83 (216)
                      -.|+|-|.-|+||||+++.+...+..+...+.++
T Consensus         6 lrI~IEG~iGsGKSTl~~~L~~~l~~~g~~v~~~   39 (331)
T d1osna_           6 LRIYLDGAYGIGKTTAAEEFLHHFAITPNRILLI   39 (331)
T ss_dssp             EEEEEEESSSSCTTHHHHHHHHTTTTSGGGEEEE
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHHhhcCCceEEE
Confidence            4689999999999999999998776543333333

>d1hyqa_ c.37.1.10 (A:) Cell division regulator MinD {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Cell division regulator MinD
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=96.33  E-value=0.0018  Score=46.33  Aligned_cols=35  Identities=31%  Similarity=0.397  Sum_probs=26.7

Q ss_pred             eEEEEE-ecCCCcHHHHHHHHHHHhcCCCCceEeec
Q 039455           50 RFIGIC-GMGGIGKTTLAKVLYNTLKDQFEASSFLA   84 (216)
Q Consensus        50 ~~i~I~-G~~GiGKTtL~~~~~~~~~~~~~~~~~~~   84 (216)
                      ++|+|+ |-||+||||++..++..+.+....+.+++
T Consensus         2 kvIav~s~KGGvGKTtia~nlA~~la~~g~~VlliD   37 (232)
T d1hyqa_           2 RTITVASGKGGTGKTTITANLGVALAQLGHDVTIVD   37 (232)
T ss_dssp             EEEEEEESSSCSCHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred             EEEEEECCCCCChHHHHHHHHHHHHHhCCCCEEEEe
Confidence            455555 88999999999999987766555566664

>d1zcba2 c.37.1.8 (A:47-75,A:202-372) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.32  E-value=0.00099  Score=46.61  Aligned_cols=19  Identities=37%  Similarity=0.468  Sum_probs=17.7

Q ss_pred             EEEEEecCCCcHHHHHHHH
Q 039455           51 FIGICGMGGIGKTTLAKVL   69 (216)
Q Consensus        51 ~i~I~G~~GiGKTtL~~~~   69 (216)
                      -|+|.|.+|+|||+|+..+
T Consensus         4 KivllG~~~vGKTsll~r~   22 (200)
T d1zcba2           4 KILLLGAGESGKSTFLKQM   22 (200)
T ss_dssp             EEEEECSTTSSHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHH
Confidence            4789999999999999998

>d1i2ma_ c.37.1.8 (A:) Ran {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ran
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.30  E-value=0.00054  Score=47.07  Aligned_cols=21  Identities=38%  Similarity=0.507  Sum_probs=17.7

Q ss_pred             EEEEEecCCCcHHHHHHHHHH
Q 039455           51 FIGICGMGGIGKTTLAKVLYN   71 (216)
Q Consensus        51 ~i~I~G~~GiGKTtL~~~~~~   71 (216)
                      -|+|.|.+|+|||+|+..+.+
T Consensus         5 Ki~vvG~~~vGKTsli~~~~~   25 (170)
T d1i2ma_           5 KLVLVGDGGTGKTTFVKRHLT   25 (170)
T ss_dssp             EEEEEECTTSSHHHHHHTTC-
T ss_pred             EEEEECCCCcCHHHHHHHHHh
Confidence            478889999999999988765

>d1puia_ c.37.1.8 (A:) Probable GTPase EngB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngB
species: Escherichia coli [TaxId: 562]

Probab=96.29  E-value=0.00085  Score=46.26  Aligned_cols=25  Identities=24%  Similarity=0.298  Sum_probs=21.9

Q ss_pred             CCeeEEEEEecCCCcHHHHHHHHHH
Q 039455           47 DDVRFIGICGMGGIGKTTLAKVLYN   71 (216)
Q Consensus        47 ~~~~~i~I~G~~GiGKTtL~~~~~~   71 (216)
                      +....|+|.|.+++|||||++.+.+
T Consensus        14 ~~~~~I~lvG~~NvGKSSL~n~L~~   38 (188)
T d1puia_          14 DTGIEVAFAGRSNAGKSSALNTLTN   38 (188)
T ss_dssp             SCSEEEEEEECTTSSHHHHHTTTCC
T ss_pred             ccCCEEEEECCCCCCHHHHHHHHhC
Confidence            4568899999999999999998854

>d2bmja1 c.37.1.8 (A:66-240) Centaurin gamma 1, G domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Centaurin gamma 1, G domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.29  E-value=0.0012  Score=45.52  Aligned_cols=23  Identities=22%  Similarity=0.333  Sum_probs=20.4

Q ss_pred             eEEEEEecCCCcHHHHHHHHHHH
Q 039455           50 RFIGICGMGGIGKTTLAKVLYNT   72 (216)
Q Consensus        50 ~~i~I~G~~GiGKTtL~~~~~~~   72 (216)
                      --|++.|.+|+|||+|+..+.+.
T Consensus         6 ~ki~vlG~~~vGKTsLi~~~~~~   28 (175)
T d2bmja1           6 LRLGVLGDARSGKSSLIHRFLTG   28 (175)
T ss_dssp             EEEEEECCTTTTHHHHHHHHHHS
T ss_pred             EEEEEECCCCCCHHHHHHHHHhC
Confidence            46889999999999999998863

>d1moza_ c.37.1.8 (A:) ADP-ribosylation factor {Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]

Probab=96.29  E-value=0.0022  Score=44.21  Aligned_cols=25  Identities=36%  Similarity=0.329  Sum_probs=20.8

Q ss_pred             CCeeEEEEEecCCCcHHHHHHHHHH
Q 039455           47 DDVRFIGICGMGGIGKTTLAKVLYN   71 (216)
Q Consensus        47 ~~~~~i~I~G~~GiGKTtL~~~~~~   71 (216)
                      .+.--|+++|.+|+|||||+..+..
T Consensus        15 ~k~~KI~lvG~~~vGKTsLi~~l~~   39 (182)
T d1moza_          15 NKELRILILGLDGAGKTTILYRLQI   39 (182)
T ss_dssp             SSCEEEEEEEETTSSHHHHHHHTCC
T ss_pred             CceEEEEEECCCCCCHHHHHHHHhc
Confidence            4456788999999999999988753

>d1svsa1 c.37.1.8 (A:32-60,A:182-347) Transducin (alpha subunit) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=96.27  E-value=0.0011  Score=46.05  Aligned_cols=22  Identities=27%  Similarity=0.314  Sum_probs=19.2

Q ss_pred             eEEEEEecCCCcHHHHHHHHHH
Q 039455           50 RFIGICGMGGIGKTTLAKVLYN   71 (216)
Q Consensus        50 ~~i~I~G~~GiGKTtL~~~~~~   71 (216)
                      --|++.|.+|+|||+|++.+..
T Consensus         3 ~KivllG~~~vGKTsl~~r~~~   24 (195)
T d1svsa1           3 VKLLLLGAGESGKSTIVKQMKI   24 (195)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHhh
Confidence            3578999999999999998865

>d1e0sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF6 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARF6 [TaxId: 9606]

Probab=96.26  E-value=0.0013  Score=45.17  Aligned_cols=23  Identities=30%  Similarity=0.212  Sum_probs=19.9

Q ss_pred             eeEEEEEecCCCcHHHHHHHHHH
Q 039455           49 VRFIGICGMGGIGKTTLAKVLYN   71 (216)
Q Consensus        49 ~~~i~I~G~~GiGKTtL~~~~~~   71 (216)
                      .--|+++|++|+|||||+..+..
T Consensus        12 ~~kIvlvG~~~vGKTSli~rl~~   34 (173)
T d1e0sa_          12 EMRILMLGLDAAGKTTILYKLKL   34 (173)
T ss_dssp             CEEEEEEEETTSSHHHHHHHTTC
T ss_pred             eEEEEEECCCCCCHHHHHHHHhc
Confidence            35688999999999999998864

>d1lnza2 c.37.1.8 (A:158-342) Obg GTP-binding protein middle domain {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Obg GTP-binding protein middle domain
species: Bacillus subtilis [TaxId: 1423]

Probab=96.24  E-value=0.00085  Score=46.54  Aligned_cols=21  Identities=33%  Similarity=0.619  Sum_probs=19.0

Q ss_pred             EEEEEecCCCcHHHHHHHHHH
Q 039455           51 FIGICGMGGIGKTTLAKVLYN   71 (216)
Q Consensus        51 ~i~I~G~~GiGKTtL~~~~~~   71 (216)
                      -|+|+|.+|+|||||+..+.+
T Consensus         3 ~VaiiG~~nvGKSSLin~L~~   23 (185)
T d1lnza2           3 DVGLVGFPSVGKSTLLSVVSS   23 (185)
T ss_dssp             CEEEESSTTSSHHHHHHHSEE
T ss_pred             eEEEECCCCCCHHHHHHHHhC
Confidence            589999999999999999864

>d2bcjq2 c.37.1.8 (Q:38-66,Q:184-354) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.23  E-value=0.0014  Score=45.64  Aligned_cols=22  Identities=27%  Similarity=0.315  Sum_probs=19.6

Q ss_pred             EEEEEecCCCcHHHHHHHHHHH
Q 039455           51 FIGICGMGGIGKTTLAKVLYNT   72 (216)
Q Consensus        51 ~i~I~G~~GiGKTtL~~~~~~~   72 (216)
                      -|++.|.+|+|||+|+..+...
T Consensus         4 Kiv~lG~~~vGKTsll~r~~~~   25 (200)
T d2bcjq2           4 KLLLLGTGESGKSTFIKQMRII   25 (200)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            5789999999999999998654

>d1g3qa_ c.37.1.10 (A:) Cell division regulator MinD {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Cell division regulator MinD
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=96.15  E-value=0.0026  Score=45.54  Aligned_cols=36  Identities=36%  Similarity=0.406  Sum_probs=27.5

Q ss_pred             eeEEEEE-ecCCCcHHHHHHHHHHHhcCCCCceEeec
Q 039455           49 VRFIGIC-GMGGIGKTTLAKVLYNTLKDQFEASSFLA   84 (216)
Q Consensus        49 ~~~i~I~-G~~GiGKTtL~~~~~~~~~~~~~~~~~~~   84 (216)
                      +++|+|+ +-||+||||++..++..+.+....+..++
T Consensus         2 ~~vIav~~~kGGvGKTtia~nLA~~la~~g~~VlliD   38 (237)
T d1g3qa_           2 GRIISIVSGKGGTGKTTVTANLSVALGDRGRKVLAVD   38 (237)
T ss_dssp             CEEEEEECSSTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred             CeEEEEECCCCCCcHHHHHHHHHHHHHhCCCCEEEEe
Confidence            3678788 77899999999999987765544555554

>d1nlfa_ c.37.1.11 (A:) Hexameric replicative helicase repA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Hexameric replicative helicase repA
species: Escherichia coli [TaxId: 562]

Probab=96.14  E-value=0.0017  Score=47.92  Aligned_cols=26  Identities=27%  Similarity=0.299  Sum_probs=22.2

Q ss_pred             eeEEEEEecCCCcHHHHHHHHHHHhc
Q 039455           49 VRFIGICGMGGIGKTTLAKVLYNTLK   74 (216)
Q Consensus        49 ~~~i~I~G~~GiGKTtL~~~~~~~~~   74 (216)
                      +.+..|+|++|+|||+|+..++..+.
T Consensus        29 g~~~~i~G~~G~GKS~l~l~la~~ia   54 (274)
T d1nlfa_          29 GTVGALVSPGGAGKSMLALQLAAQIA   54 (274)
T ss_dssp             TSEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred             CcEEEEEeCCCCCHHHHHHHHHHHHH
Confidence            36888999999999999999887543

>d1t9ha2 c.37.1.8 (A:68-298) Probable GTPase EngC (YjeQ), C-terminal domain {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngC (YjeQ), C-terminal domain
species: Bacillus subtilis [TaxId: 1423]

Probab=96.09  E-value=0.00063  Score=49.15  Aligned_cols=23  Identities=22%  Similarity=0.439  Sum_probs=19.3

Q ss_pred             eEEEEEecCCCcHHHHHHHHHHH
Q 039455           50 RFIGICGMGGIGKTTLAKVLYNT   72 (216)
Q Consensus        50 ~~i~I~G~~GiGKTtL~~~~~~~   72 (216)
                      +..++.|++|+|||||+..+...
T Consensus        98 ~~~vl~G~SGVGKSSLiN~L~~~  120 (231)
T d1t9ha2          98 KTTVFAGQSGVGKSSLLNAISPE  120 (231)
T ss_dssp             SEEEEEESHHHHHHHHHHHHCC-
T ss_pred             ceEEEECCCCccHHHHHHhhccH
Confidence            46678899999999999998754

>d1udxa2 c.37.1.8 (A:157-336) Obg GTP-binding protein middle domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Obg GTP-binding protein middle domain
species: Thermus thermophilus [TaxId: 274]

Probab=96.07  E-value=0.0011  Score=45.72  Aligned_cols=21  Identities=24%  Similarity=0.460  Sum_probs=18.9

Q ss_pred             EEEEEecCCCcHHHHHHHHHH
Q 039455           51 FIGICGMGGIGKTTLAKVLYN   71 (216)
Q Consensus        51 ~i~I~G~~GiGKTtL~~~~~~   71 (216)
                      -|+|.|.+|+|||||++.+.+
T Consensus         3 ~VaivG~~nvGKSTLin~L~~   23 (180)
T d1udxa2           3 DVGLVGYPNAGKSSLLAAMTR   23 (180)
T ss_dssp             SEEEECCGGGCHHHHHHHHCS
T ss_pred             EEEEECCCCCCHHHHHHHHhC
Confidence            388999999999999999865

>d2fu5c1 c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab8a
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.07  E-value=0.00089  Score=45.99  Aligned_cols=21  Identities=24%  Similarity=0.297  Sum_probs=8.8

Q ss_pred             EEEEEecCCCcHHHHHHHHHH
Q 039455           51 FIGICGMGGIGKTTLAKVLYN   71 (216)
Q Consensus        51 ~i~I~G~~GiGKTtL~~~~~~   71 (216)
                      -|+|.|.+|+|||||+..+.+
T Consensus         8 Ki~vvG~~~vGKTsLi~~l~~   28 (173)
T d2fu5c1           8 KLLLIGDSGVGKTCVLFRFSE   28 (173)
T ss_dssp             EEEEECCCCC-----------
T ss_pred             EEEEECCCCcCHHHHHHHHHh
Confidence            478999999999999998875

>d1e69a_ c.37.1.12 (A:) Smc head domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Smc head domain
species: Thermotoga maritima [TaxId: 2336]

Probab=96.06  E-value=0.0012  Score=49.45  Aligned_cols=46  Identities=17%  Similarity=0.179  Sum_probs=29.1

Q ss_pred             CceEEEEEeCCCC---HHHHHHhhcCCCCCCCCcEEEEEeCCchhhhcc
Q 039455          130 RKRVLVVLDDVDQ---LEQLQALAGNHDWFGFGSRIIITTRDEHVLKGH  175 (216)
Q Consensus       130 ~~~~llvlDd~~~---~~~~~~l~~~~~~~~~~~~il~tsr~~~~~~~~  175 (216)
                      ..+-++++|+++.   ......+...+....+...+|+|||++.+.+..
T Consensus       240 ~~~~~~~iDEpe~~Lhp~~~~~l~~~l~~~~~~~QviitTHsp~~~~~~  288 (308)
T d1e69a_         240 KPSPFYVLDEVDSPLDDYNAERFKRLLKENSKHTQFIVITHNKIVMEAA  288 (308)
T ss_dssp             SCCSEEEEESCCSSCCHHHHHHHHHHHHHHTTTSEEEEECCCTTGGGGC
T ss_pred             ccCchhhhhhccccCCHHHHHHHHHHHHHhccCCEEEEEECCHHHHHhc
Confidence            3556889999873   333333332222223567899999999888765

>d1mkya2 c.37.1.8 (A:173-358) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase Der, N-terminal and middle domains
species: Thermotoga maritima [TaxId: 2336]

Probab=96.03  E-value=0.0023  Score=44.14  Aligned_cols=23  Identities=30%  Similarity=0.462  Sum_probs=20.6

Q ss_pred             eeEEEEEecCCCcHHHHHHHHHH
Q 039455           49 VRFIGICGMGGIGKTTLAKVLYN   71 (216)
Q Consensus        49 ~~~i~I~G~~GiGKTtL~~~~~~   71 (216)
                      .-.|+|.|.+|+|||||+..+.+
T Consensus         8 ~~kV~iiG~~~~GKSTLin~l~~   30 (186)
T d1mkya2           8 AIKVAIVGRPNVGKSTLFNAILN   30 (186)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHHT
T ss_pred             CCEEEEECCCCCCHHHHHHHHHC
Confidence            45789999999999999999986

>d1azta2 c.37.1.8 (A:35-65,A:202-391) Transducin (alpha subunit) {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Cow (Bos taurus) [TaxId: 9913]

Probab=95.99  E-value=0.0018  Score=46.43  Aligned_cols=22  Identities=27%  Similarity=0.359  Sum_probs=19.4

Q ss_pred             eEEEEEecCCCcHHHHHHHHHH
Q 039455           50 RFIGICGMGGIGKTTLAKVLYN   71 (216)
Q Consensus        50 ~~i~I~G~~GiGKTtL~~~~~~   71 (216)
                      --|++.|.+|+|||||++.+..
T Consensus         7 ~KilllG~~~vGKTsll~~~~~   28 (221)
T d1azta2           7 HRLLLLGAGESGKSTIVKQMRI   28 (221)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHhc
Confidence            4689999999999999999854

>d1xzpa2 c.37.1.8 (A:212-371) TrmE GTPase domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: TrmE GTPase domain
species: Thermotoga maritima [TaxId: 2336]

Probab=95.85  E-value=0.00075  Score=45.54  Aligned_cols=22  Identities=36%  Similarity=0.459  Sum_probs=19.9

Q ss_pred             EEEEEecCCCcHHHHHHHHHHH
Q 039455           51 FIGICGMGGIGKTTLAKVLYNT   72 (216)
Q Consensus        51 ~i~I~G~~GiGKTtL~~~~~~~   72 (216)
                      -|+|.|.+|+|||||++.+.+.
T Consensus         2 kI~liG~~n~GKSSLin~l~g~   23 (160)
T d1xzpa2           2 RMVIVGKPNVGKSTLLNRLLNE   23 (160)
T ss_dssp             EEEEECCHHHHTCHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            4789999999999999999874

>d1w1wa_ c.37.1.12 (A:) Smc head domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Smc head domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.78  E-value=0.0027  Score=49.51  Aligned_cols=21  Identities=29%  Similarity=0.553  Sum_probs=18.8

Q ss_pred             eEEEEEecCCCcHHHHHHHHH
Q 039455           50 RFIGICGMGGIGKTTLAKVLY   70 (216)
Q Consensus        50 ~~i~I~G~~GiGKTtL~~~~~   70 (216)
                      ..-+|+|++|+|||+++.++.
T Consensus        26 ~l~~i~G~NGsGKS~ileAi~   46 (427)
T d1w1wa_          26 NFTSIIGPNGSGKSNMMDAIS   46 (427)
T ss_dssp             SEEEEECSTTSSHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHH
Confidence            577899999999999999984

>d1tq4a_ c.37.1.8 (A:) Interferon-inducible GTPase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Interferon-inducible GTPase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.71  E-value=0.0035  Score=49.08  Aligned_cols=23  Identities=26%  Similarity=0.436  Sum_probs=21.0

Q ss_pred             eeEEEEEecCCCcHHHHHHHHHH
Q 039455           49 VRFIGICGMGGIGKTTLAKVLYN   71 (216)
Q Consensus        49 ~~~i~I~G~~GiGKTtL~~~~~~   71 (216)
                      .-.|+|+|.+|+|||||++.+.+
T Consensus        56 ~l~Iai~G~~n~GKSSLiNaL~G   78 (400)
T d1tq4a_          56 VLNVAVTGETGSGKSSFINTLRG   78 (400)
T ss_dssp             CEEEEEEECTTSSHHHHHHHHHT
T ss_pred             CcEEEEECCCCCCHHHHHHHHhC
Confidence            46799999999999999999985

>d1pjra1 c.37.1.19 (A:1-318) DEXX box DNA helicase {Bacillus stearothermophilus, PcrA [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: DEXX box DNA helicase
species: Bacillus stearothermophilus, PcrA [TaxId: 1422]

Probab=95.69  E-value=0.0049  Score=46.26  Aligned_cols=19  Identities=26%  Similarity=0.174  Sum_probs=15.1

Q ss_pred             eEEEEEecCCCcHHHHHHH
Q 039455           50 RFIGICGMGGIGKTTLAKV   68 (216)
Q Consensus        50 ~~i~I~G~~GiGKTtL~~~   68 (216)
                      ..+.|.|++|+||||.+-+
T Consensus        25 g~~lV~g~aGSGKTt~l~~   43 (318)
T d1pjra1          25 GPLLIMAGAGSGKTRVLTH   43 (318)
T ss_dssp             SCEEEEECTTSCHHHHHHH
T ss_pred             CCEEEEecCCccHHHHHHH
Confidence            3477889999999976544

>d1uaaa1 c.37.1.19 (A:2-307) DEXX box DNA helicase {Escherichia coli, RepD [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: DEXX box DNA helicase
species: Escherichia coli, RepD [TaxId: 562]

Probab=95.68  E-value=0.0029  Score=47.19  Aligned_cols=19  Identities=21%  Similarity=0.083  Sum_probs=14.8

Q ss_pred             eEEEEEecCCCcHHHHHHH
Q 039455           50 RFIGICGMGGIGKTTLAKV   68 (216)
Q Consensus        50 ~~i~I~G~~GiGKTtL~~~   68 (216)
                      ..+.|.|++|+||||++-.
T Consensus        15 ~~~lI~g~aGTGKTt~l~~   33 (306)
T d1uaaa1          15 GPCLVLAGAGSGKTRVITN   33 (306)
T ss_dssp             SEEEECCCTTSCHHHHHHH
T ss_pred             CCEEEEeeCCccHHHHHHH
Confidence            3578889999999976533

>d2jdia3 c.37.1.11 (A:95-379) Central domain of alpha subunit of F1 ATP synthase {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Central domain of alpha subunit of F1 ATP synthase
species: Cow (Bos taurus) [TaxId: 9913]

Probab=95.67  E-value=0.0043  Score=46.14  Aligned_cols=25  Identities=24%  Similarity=0.018  Sum_probs=21.5

Q ss_pred             CeeEEEEEecCCCcHHHHHHHHHHH
Q 039455           48 DVRFIGICGMGGIGKTTLAKVLYNT   72 (216)
Q Consensus        48 ~~~~i~I~G~~GiGKTtL~~~~~~~   72 (216)
                      .+..++|.|++|+|||+|+..++..
T Consensus        67 ~GQr~~If~~~g~GKt~ll~~~~~~   91 (285)
T d2jdia3          67 RGQRELIIGDRQTGKTSIAIDTIIN   91 (285)
T ss_dssp             TTCBCEEEESTTSSHHHHHHHHHHH
T ss_pred             CCCEEEeecCCCCChHHHHHHHHHh
Confidence            4578899999999999999888754

>d1p6xa_ c.37.1.1 (A:) Thymidine kinase {Equine herpesvirus type 4 [TaxId: 10331]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidine kinase
species: Equine herpesvirus type 4 [TaxId: 10331]

Probab=95.56  E-value=0.006  Score=46.45  Aligned_cols=29  Identities=28%  Similarity=0.331  Sum_probs=24.7

Q ss_pred             eeEEEEEecCCCcHHHHHHHHHHHhcCCC
Q 039455           49 VRFIGICGMGGIGKTTLAKVLYNTLKDQF   77 (216)
Q Consensus        49 ~~~i~I~G~~GiGKTtL~~~~~~~~~~~~   77 (216)
                      ...|+|-|+-|+||||+++.+.+.+..+.
T Consensus         6 ~~rI~iEG~iGsGKSTl~~~L~~~l~~~~   34 (333)
T d1p6xa_           6 IVRIYLDGVYGIGKSTTGRVMASAASGGS   34 (333)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHSGGGCSS
T ss_pred             eEEEEEECCccCCHHHHHHHHHHHhccCC
Confidence            35789999999999999999998876543

>d2eyqa3 c.37.1.19 (A:546-778) Transcription-repair coupling factor, TRCF {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: Transcription-repair coupling factor, TRCF
species: Escherichia coli [TaxId: 562]

Probab=95.31  E-value=0.15  Score=36.41  Aligned_cols=45  Identities=20%  Similarity=0.099  Sum_probs=31.2

Q ss_pred             HHHHHHhcCCCCeeEEEEEecCCCcHHHHHHHHHHHhcCCCCceEee
Q 039455           37 KMNGYLEAGLDDVRFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFL   83 (216)
Q Consensus        37 ~l~~~l~~~~~~~~~i~I~G~~GiGKTtL~~~~~~~~~~~~~~~~~~   83 (216)
                      .+.+.+..  +......|+|..|+|||-++-..+...-.....+.++
T Consensus        66 ~i~~~~~~--~~~~~~LL~GdvGsGKT~V~~~a~~~~~~~g~qv~~l  110 (233)
T d2eyqa3          66 AVLSDMCQ--PLAMDRLVCGDVGFGKTEVAMRAAFLAVDNHKQVAVL  110 (233)
T ss_dssp             HHHHHHHS--SSCCEEEEECCCCTTTHHHHHHHHHHHHTTTCEEEEE
T ss_pred             HHHHHHhc--cCccCeEEEcCCCCCcHHHHHHHHHHHHHcCCceEEE
Confidence            34444443  3446888999999999999988887655554555554

>d1e9ra_ c.37.1.11 (A:) Bacterial conjugative coupling protein TrwB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Bacterial conjugative coupling protein TrwB
species: Escherichia coli [TaxId: 562]

Probab=94.88  E-value=0.0084  Score=47.02  Aligned_cols=23  Identities=35%  Similarity=0.478  Sum_probs=19.9

Q ss_pred             eEEEEEecCCCcHHHHHHHHHHH
Q 039455           50 RFIGICGMGGIGKTTLAKVLYNT   72 (216)
Q Consensus        50 ~~i~I~G~~GiGKTtL~~~~~~~   72 (216)
                      +.+.|.|++|+|||++++.++.+
T Consensus        51 ~H~~I~G~tGsGKT~~l~~li~~   73 (433)
T d1e9ra_          51 RHLLVNGATGTGKSVLLRELAYT   73 (433)
T ss_dssp             GCEEEEECTTSSHHHHHHHHHHH
T ss_pred             ceEEEEeCCCCcHHHHHHHHHHH
Confidence            57999999999999998877654

>d1gkub1 c.37.1.16 (B:1-250) Helicase-like "domain" of reverse gyrase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Helicase-like "domain" of reverse gyrase
domain: Helicase-like "domain" of reverse gyrase
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=94.76  E-value=0.031  Score=39.96  Aligned_cols=46  Identities=13%  Similarity=0.055  Sum_probs=28.2

Q ss_pred             hHHHHHHHHHhcCCCCeeEEEEEecCCCcHHHHHHHHHHHhcCCCCceEee
Q 039455           33 SRMEKMNGYLEAGLDDVRFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFL   83 (216)
Q Consensus        33 ~~~~~l~~~l~~~~~~~~~i~I~G~~GiGKTtL~~~~~~~~~~~~~~~~~~   83 (216)
                      .+...+...+..     +.++|++|.|+|||..+...+-.....-..+.++
T Consensus        47 ~Q~~~i~~~l~g-----~~~~i~apTGsGKT~~~~~~~~~~~~~~~rvliv   92 (237)
T d1gkub1          47 IQKMWAKRILRK-----ESFAATAPTGVGKTSFGLAMSLFLALKGKRCYVI   92 (237)
T ss_dssp             HHHHHHHHHHTT-----CCEECCCCBTSCSHHHHHHHHHHHHTTSCCEEEE
T ss_pred             HHHHHHHHHHCC-----CCEEEEecCCChHHHHHHHHHHHHHHhcCeEEEE
Confidence            344445555543     4688899999999987665554433333445554

>d2bv3a2 c.37.1.8 (A:7-282) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor G (EF-G), N-terminal (G) domain
species: Thermus thermophilus [TaxId: 274]

Probab=94.75  E-value=0.011  Score=43.69  Aligned_cols=24  Identities=33%  Similarity=0.375  Sum_probs=21.9

Q ss_pred             CeeEEEEEecCCCcHHHHHHHHHH
Q 039455           48 DVRFIGICGMGGIGKTTLAKVLYN   71 (216)
Q Consensus        48 ~~~~i~I~G~~GiGKTtL~~~~~~   71 (216)
                      +.+.|+|+|-.|+|||||+..+..
T Consensus         5 ~iRni~i~gh~~~GKTtL~e~ll~   28 (276)
T d2bv3a2           5 RLRNIGIAAHIDAGKTTTTERILY   28 (276)
T ss_dssp             GEEEEEEEECTTSCHHHHHHHHHH
T ss_pred             hceEEEEEeCCCCCHHHHHHHHHH
Confidence            467899999999999999999976

>d1f5na2 c.37.1.8 (A:7-283) Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.64  E-value=0.018  Score=42.57  Aligned_cols=26  Identities=23%  Similarity=0.327  Sum_probs=23.2

Q ss_pred             CCeeEEEEEecCCCcHHHHHHHHHHH
Q 039455           47 DDVRFIGICGMGGIGKTTLAKVLYNT   72 (216)
Q Consensus        47 ~~~~~i~I~G~~GiGKTtL~~~~~~~   72 (216)
                      ....+|+|+|+-++|||+|+..+.+.
T Consensus        30 ~~v~vvsi~G~~~sGKS~llN~l~~~   55 (277)
T d1f5na2          30 QPMVVVAIVGLYRTGKSYLMNKLAGK   55 (277)
T ss_dssp             SBEEEEEEEEBTTSSHHHHHHHHTTC
T ss_pred             CCEEEEEEECCCCCCHHHHHHHHcCC
Confidence            45789999999999999999999873

>d1wb1a4 c.37.1.8 (A:1-179) Elongation factor SelB, N-terminal domain {Methanococcus maripaludis [TaxId: 39152]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor SelB, N-terminal domain
species: Methanococcus maripaludis [TaxId: 39152]

Probab=94.61  E-value=0.01  Score=40.73  Aligned_cols=22  Identities=50%  Similarity=0.536  Sum_probs=19.9

Q ss_pred             eEEEEEecCCCcHHHHHHHHHH
Q 039455           50 RFIGICGMGGIGKTTLAKVLYN   71 (216)
Q Consensus        50 ~~i~I~G~~GiGKTtL~~~~~~   71 (216)
                      -.|+|.|.+++|||||+..+.+
T Consensus         6 inIaiiG~~naGKSTL~n~L~~   27 (179)
T d1wb1a4           6 INLGIFGHIDHGKTTLSKVLTE   27 (179)
T ss_dssp             EEEEEEECTTSSHHHHHHHHHT
T ss_pred             EEEEEEeCCCCcHHHHHHHHHH
Confidence            3699999999999999999975

>d1puja_ c.37.1.8 (A:) Probable GTPase YlqF {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase YlqF
species: Bacillus subtilis [TaxId: 1423]

Probab=94.55  E-value=0.066  Score=39.20  Aligned_cols=48  Identities=19%  Similarity=0.118  Sum_probs=31.9

Q ss_pred             ccccccchhHHHHHHHHHh--------c-CCCCeeEEEEEecCCCcHHHHHHHHHHH
Q 039455           25 VDGLVGIASRMEKMNGYLE--------A-GLDDVRFIGICGMGGIGKTTLAKVLYNT   72 (216)
Q Consensus        25 ~~~~vgR~~~~~~l~~~l~--------~-~~~~~~~i~I~G~~GiGKTtL~~~~~~~   72 (216)
                      .....|.......+...+.        . .....-.++|+|.+.+|||||+..+.++
T Consensus        79 a~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~v~vvG~PNvGKSsliN~L~~~  135 (273)
T d1puja_          79 SVNGQGLNQIVPASKEILQEKFDRMRAKGVKPRAIRALIIGIPNVGKSTLINRLAKK  135 (273)
T ss_dssp             TTTCTTGGGHHHHHHHHHHHHHHHHHHTTCCCCCEEEEEEESTTSSHHHHHHHHHTS
T ss_pred             cccCCCccccchhhhhhhhhhhhhhhhccCCCCceEEEEEecCccchhhhhhhhhcc
Confidence            3444555555554444332        1 1234567999999999999999999874

>d2dy1a2 c.37.1.8 (A:8-274) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus, EF-G-2 [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor G (EF-G), N-terminal (G) domain
species: Thermus thermophilus, EF-G-2 [TaxId: 274]

Probab=94.46  E-value=0.017  Score=42.48  Aligned_cols=23  Identities=39%  Similarity=0.665  Sum_probs=20.6

Q ss_pred             eeEEEEEecCCCcHHHHHHHHHH
Q 039455           49 VRFIGICGMGGIGKTTLAKVLYN   71 (216)
Q Consensus        49 ~~~i~I~G~~GiGKTtL~~~~~~   71 (216)
                      .+.|+|.|..|.|||||+..+..
T Consensus         2 iRNv~iiGh~~~GKTtL~e~ll~   24 (267)
T d2dy1a2           2 IRTVALVGHAGSGKTTLTEALLY   24 (267)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHH
T ss_pred             eeEEEEEcCCCCcHHHHHHHHHH
Confidence            36799999999999999999965

>d1a1va1 c.37.1.14 (A:190-325) HCV helicase domain {Human hepatitis C virus (HCV), different isolates [TaxId: 11103]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RNA helicase
domain: HCV helicase domain
species: Human hepatitis C virus (HCV), different isolates [TaxId: 11103]

Probab=94.44  E-value=0.011  Score=38.48  Aligned_cols=25  Identities=20%  Similarity=0.292  Sum_probs=20.0

Q ss_pred             CCeeEEEEEecCCCcHHHHHHHHHH
Q 039455           47 DDVRFIGICGMGGIGKTTLAKVLYN   71 (216)
Q Consensus        47 ~~~~~i~I~G~~GiGKTtL~~~~~~   71 (216)
                      ++.++..|++|.|+|||+++-.++.
T Consensus         6 ~~~~~~ll~apTGsGKT~~~~~~~~   30 (136)
T d1a1va1           6 QSFQVAHLHAPTGSGKSTKVPAAYA   30 (136)
T ss_dssp             SSCEEEEEECCTTSCTTTHHHHHHH
T ss_pred             cCCCEEEEEeCCCCCHHHHHHHHHH
Confidence            3457899999999999998765553

>d1g7sa4 c.37.1.8 (A:1-227) Initiation factor IF2/eIF5b, N-terminal (G) domain {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Initiation factor IF2/eIF5b, N-terminal (G) domain
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=94.37  E-value=0.014  Score=41.72  Aligned_cols=23  Identities=26%  Similarity=0.351  Sum_probs=20.8

Q ss_pred             eEEEEEecCCCcHHHHHHHHHHH
Q 039455           50 RFIGICGMGGIGKTTLAKVLYNT   72 (216)
Q Consensus        50 ~~i~I~G~~GiGKTtL~~~~~~~   72 (216)
                      ++|+|.|-.++|||||+..+.+.
T Consensus         6 p~IaIiGh~d~GKSTL~~~L~~~   28 (227)
T d1g7sa4           6 PIVSVLGHVDHGKTTLLDHIRGS   28 (227)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CEEEEEeCCCccHHHHHHHHHhh
Confidence            57999999999999999999764

>d1e2ka_ c.37.1.1 (A:) Thymidine kinase {Herpes simplex virus type 1, different strains [TaxId: 10298]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidine kinase
species: Herpes simplex virus type 1, different strains [TaxId: 10298]

Probab=94.15  E-value=0.0097  Score=45.13  Aligned_cols=26  Identities=31%  Similarity=0.291  Sum_probs=20.6

Q ss_pred             eeEEEEEecCCCcHHHHHHHHHHHhc
Q 039455           49 VRFIGICGMGGIGKTTLAKVLYNTLK   74 (216)
Q Consensus        49 ~~~i~I~G~~GiGKTtL~~~~~~~~~   74 (216)
                      ...|+|=|+-|+||||+++.+...+.
T Consensus         4 ~lrI~IEG~iGsGKTTl~~~La~~l~   29 (329)
T d1e2ka_           4 LLRVYIDGPHGMGKTTTTQLLVALGS   29 (329)
T ss_dssp             EEEEEECSCTTSSHHHHHHHHTC---
T ss_pred             ceEEEEECCcCCCHHHHHHHHHHHhC
Confidence            35689999999999999999987654

>d1g8fa3 c.37.1.15 (A:390-511) ATP sulfurylase C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ATP sulfurylase C-terminal domain
domain: ATP sulfurylase C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=94.05  E-value=0.025  Score=36.07  Aligned_cols=29  Identities=14%  Similarity=0.054  Sum_probs=25.2

Q ss_pred             CCeeEEEEEecCCCcHHHHHHHHHHHhcC
Q 039455           47 DDVRFIGICGMGGIGKTTLAKVLYNTLKD   75 (216)
Q Consensus        47 ~~~~~i~I~G~~GiGKTtL~~~~~~~~~~   75 (216)
                      .++=.|.++|..|+||+|||+.+...+.+
T Consensus         4 kqgf~i~~tg~~~~gk~~ia~al~~~l~q   32 (122)
T d1g8fa3           4 KQGFSIVLGNSLTVSREQLSIALLSTFLQ   32 (122)
T ss_dssp             GCCEEEEECTTCCSCHHHHHHHHHHHHTT
T ss_pred             ccceEEEEeCCCCCCHHHHHHHHHHHHHH
Confidence            34578999999999999999999887755

>d2p6ra3 c.37.1.19 (A:1-202) Hel308 helicase {Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: Hel308 helicase
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=94.03  E-value=0.025  Score=39.37  Aligned_cols=33  Identities=18%  Similarity=0.111  Sum_probs=21.1

Q ss_pred             eEEEEEecCCCcHHHHHHHHH-HHhcCCCCceEee
Q 039455           50 RFIGICGMGGIGKTTLAKVLY-NTLKDQFEASSFL   83 (216)
Q Consensus        50 ~~i~I~G~~GiGKTtL~~~~~-~~~~~~~~~~~~~   83 (216)
                      +.++|.+|.|+|||+.+...+ ..... ...+.++
T Consensus        41 ~~~il~apTGsGKT~~a~l~i~~~~~~-~~~vl~l   74 (202)
T d2p6ra3          41 KNLLLAMPTAAGKTLLAEMAMVREAIK-GGKSLYV   74 (202)
T ss_dssp             SCEEEECSSHHHHHHHHHHHHHHHHHT-TCCEEEE
T ss_pred             CCEEEEcCCCCchhHHHHHHHHHHhhc-cCcceee
Confidence            357899999999998874433 33322 2345554

>d1yksa1 c.37.1.14 (A:185-324) YFV helicase domain {Yellow fever virus [TaxId: 11089]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RNA helicase
domain: YFV helicase domain
species: Yellow fever virus [TaxId: 11089]

Probab=93.79  E-value=0.014  Score=37.56  Aligned_cols=20  Identities=20%  Similarity=-0.127  Sum_probs=16.3

Q ss_pred             CeeEEEEEecCCCcHHHHHH
Q 039455           48 DVRFIGICGMGGIGKTTLAK   67 (216)
Q Consensus        48 ~~~~i~I~G~~GiGKTtL~~   67 (216)
                      ++..++|+++.|+|||..+-
T Consensus         6 ~~~~~il~~~tGsGKT~~~~   25 (140)
T d1yksa1           6 KGMTTVLDFHPGAGKTRRFL   25 (140)
T ss_dssp             TTCEEEECCCTTSSTTTTHH
T ss_pred             cCCcEEEEcCCCCChhHHHH
Confidence            34788999999999996654

>d1hv8a1 c.37.1.19 (A:3-210) Putative DEAD box RNA helicase {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: Putative DEAD box RNA helicase
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=93.70  E-value=0.19  Score=34.88  Aligned_cols=22  Identities=23%  Similarity=0.021  Sum_probs=17.1

Q ss_pred             eEEEEEecCCCcHHHHHHHHHH
Q 039455           50 RFIGICGMGGIGKTTLAKVLYN   71 (216)
Q Consensus        50 ~~i~I~G~~GiGKTtL~~~~~~   71 (216)
                      .-+++.++.|+|||..+.....
T Consensus        43 ~d~iv~a~TGsGKT~~~~l~~~   64 (208)
T d1hv8a1          43 YNIVAQARTGSGKTASFAIPLI   64 (208)
T ss_dssp             SEEEEECCSSSSHHHHHHHHHH
T ss_pred             CCeeeechhcccccceeecccc
Confidence            3678999999999986655543

>d2j0sa1 c.37.1.19 (A:22-243) Probable ATP-dependent RNA helicase DDX48 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: Probable ATP-dependent RNA helicase DDX48
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.41  E-value=0.086  Score=37.33  Aligned_cols=15  Identities=33%  Similarity=0.319  Sum_probs=13.4

Q ss_pred             eEEEEEecCCCcHHH
Q 039455           50 RFIGICGMGGIGKTT   64 (216)
Q Consensus        50 ~~i~I~G~~GiGKTt   64 (216)
                      +-+++..+.|+|||.
T Consensus        55 ~dvi~~a~TGSGKTl   69 (222)
T d2j0sa1          55 RDVIAQSQSGTGKTA   69 (222)
T ss_dssp             CCEEEECCTTSSHHH
T ss_pred             CCeEEEcCcchhhhh
Confidence            578899999999995

>d1n0ua2 c.37.1.8 (A:3-343) Elongation factor 2 (eEF-2), N-terminal (G) domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor 2 (eEF-2), N-terminal (G) domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=93.38  E-value=0.033  Score=42.31  Aligned_cols=34  Identities=24%  Similarity=0.401  Sum_probs=26.3

Q ss_pred             HHHHHHhcCCCCeeEEEEEecCCCcHHHHHHHHHH
Q 039455           37 KMNGYLEAGLDDVRFIGICGMGGIGKTTLAKVLYN   71 (216)
Q Consensus        37 ~l~~~l~~~~~~~~~i~I~G~~GiGKTtL~~~~~~   71 (216)
                      .+.+++.. .++.+.|+|.|-.|.|||||+..+..
T Consensus         6 ~~~~lm~~-~~~IRNI~iiGhvd~GKTTL~d~Ll~   39 (341)
T d1n0ua2           6 QMRSLMDK-VTNVRNMSVIAHVDHGKSTLTDSLVQ   39 (341)
T ss_dssp             HHHHHHHC-GGGEEEEEEECCGGGTHHHHHHHHHH
T ss_pred             HHHHHhcC-cccCcEEEEEeCCCCcHHHHHHHHHH
Confidence            34444443 25678899999999999999999974

>d1wp9a1 c.37.1.19 (A:1-200) putative ATP-dependent RNA helicase PF2015 {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: putative ATP-dependent RNA helicase PF2015
species: Pyrococcus furiosus [TaxId: 2261]

Probab=93.30  E-value=0.16  Score=34.72  Aligned_cols=20  Identities=30%  Similarity=0.300  Sum_probs=15.7

Q ss_pred             EEEEecCCCcHHHHHHHHHH
Q 039455           52 IGICGMGGIGKTTLAKVLYN   71 (216)
Q Consensus        52 i~I~G~~GiGKTtL~~~~~~   71 (216)
                      +.|++|.|+|||.++..++.
T Consensus        26 ~lv~~pTGsGKT~i~~~~~~   45 (200)
T d1wp9a1          26 CLIVLPTGLGKTLIAMMIAE   45 (200)
T ss_dssp             EEEECCTTSCHHHHHHHHHH
T ss_pred             eEEEeCCCCcHHHHHHHHHH
Confidence            56889999999987665554

>d2g9na1 c.37.1.19 (A:21-238) Initiation factor 4a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: Initiation factor 4a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.28  E-value=0.1  Score=36.83  Aligned_cols=25  Identities=16%  Similarity=0.141  Sum_probs=17.2

Q ss_pred             eEEEEEecCCCcHHHHHH-HHHHHhc
Q 039455           50 RFIGICGMGGIGKTTLAK-VLYNTLK   74 (216)
Q Consensus        50 ~~i~I~G~~GiGKTtL~~-~~~~~~~   74 (216)
                      .-+++.++.|+|||.... -+.+.+.
T Consensus        50 ~dvl~~a~TGsGKTlayllp~l~~i~   75 (218)
T d2g9na1          50 YDVIAQAQSGTGKTATFAISILQQIE   75 (218)
T ss_dssp             CCEEEECCTTSSHHHHHHHHHHHHCC
T ss_pred             CCEEEEcccchhhhhhhhhhhhheec
Confidence            468899999999995443 3344443

>d1gm5a3 c.37.1.19 (A:286-549) RecG helicase domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: RecG helicase domain
species: Thermotoga maritima [TaxId: 2336]

Probab=92.96  E-value=0.41  Score=34.68  Aligned_cols=36  Identities=19%  Similarity=0.076  Sum_probs=25.0

Q ss_pred             CeeEEEEEecCCCcHHHHHHHHHHHhcCCCCceEee
Q 039455           48 DVRFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFL   83 (216)
Q Consensus        48 ~~~~i~I~G~~GiGKTtL~~~~~~~~~~~~~~~~~~   83 (216)
                      ....-.|.|..|+|||.++-..+...-.....+.+.
T Consensus       103 ~~m~rLL~GdvGSGKT~Va~~a~~~~~~~g~q~~~m  138 (264)
T d1gm5a3         103 KPMNRLLQGDVGSGKTVVAQLAILDNYEAGFQTAFM  138 (264)
T ss_dssp             SCCCCEEECCSSSSHHHHHHHHHHHHHHHTSCEEEE
T ss_pred             CcceeeeeccccccccHHHHHHHHHHHhcccceeEE
Confidence            345678999999999999888876543333344443

>d1d0xa2 c.37.1.9 (A:2-33,A:80-759) Myosin S1, motor domain {Dictyostelium discoideum [TaxId: 44689]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Myosin S1, motor domain
species: Dictyostelium discoideum [TaxId: 44689]

Probab=92.43  E-value=0.081  Score=44.20  Aligned_cols=26  Identities=31%  Similarity=0.326  Sum_probs=22.4

Q ss_pred             CeeEEEEEecCCCcHHHHHHHHHHHh
Q 039455           48 DVRFIGICGMGGIGKTTLAKVLYNTL   73 (216)
Q Consensus        48 ~~~~i~I~G~~GiGKTtL~~~~~~~~   73 (216)
                      ....|+|.|++|+|||.-++.+.+.+
T Consensus       124 ~nQsIiisGeSGaGKTe~~k~il~yL  149 (712)
T d1d0xa2         124 QNQSLLITGESGAGKTENTKKVIQYL  149 (712)
T ss_dssp             CCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             CCceEEEeCCCCCCHHHHHHHHHHHH
Confidence            45899999999999999999887643

>d1qdea_ c.37.1.19 (A:) Initiation factor 4a {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: Initiation factor 4a
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=92.37  E-value=0.14  Score=35.80  Aligned_cols=24  Identities=17%  Similarity=0.105  Sum_probs=17.1

Q ss_pred             eEEEEEecCCCcHHHHHH-HHHHHh
Q 039455           50 RFIGICGMGGIGKTTLAK-VLYNTL   73 (216)
Q Consensus        50 ~~i~I~G~~GiGKTtL~~-~~~~~~   73 (216)
                      +-+++.++.|+|||.... -+.+++
T Consensus        48 ~dvl~~a~TGsGKT~a~~lp~i~~l   72 (212)
T d1qdea_          48 HDVLAQAQSGTGKTGTFSIAALQRI   72 (212)
T ss_dssp             CCEEEECCTTSSHHHHHHHHHHHHC
T ss_pred             CCEEeecccccchhhhhHhhhHhhh
Confidence            569999999999996443 333444

>d1ni3a1 c.37.1.8 (A:11-306) YchF GTP-binding protein N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: YchF GTP-binding protein N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=92.08  E-value=0.042  Score=40.81  Aligned_cols=23  Identities=30%  Similarity=0.481  Sum_probs=20.7

Q ss_pred             eeEEEEEecCCCcHHHHHHHHHH
Q 039455           49 VRFIGICGMGGIGKTTLAKVLYN   71 (216)
Q Consensus        49 ~~~i~I~G~~GiGKTtL~~~~~~   71 (216)
                      .--++|+|.+.+|||||..++-.
T Consensus        10 ~~kiGivG~Pn~GKSTlfnalT~   32 (296)
T d1ni3a1          10 NLKTGIVGMPNVGKSTFFRAITK   32 (296)
T ss_dssp             CCEEEEEECSSSSHHHHHHHHHH
T ss_pred             CcEEEEECCCCCCHHHHHHHHHC
Confidence            35699999999999999999986

>d1lkxa_ c.37.1.9 (A:) Myosin S1, motor domain {Dictyostelium discoideum, class-I myosin MyoE [TaxId: 44689]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Myosin S1, motor domain
species: Dictyostelium discoideum, class-I myosin MyoE [TaxId: 44689]

Probab=92.07  E-value=0.061  Score=44.78  Aligned_cols=25  Identities=28%  Similarity=0.393  Sum_probs=21.6

Q ss_pred             CeeEEEEEecCCCcHHHHHHHHHHH
Q 039455           48 DVRFIGICGMGGIGKTTLAKVLYNT   72 (216)
Q Consensus        48 ~~~~i~I~G~~GiGKTtL~~~~~~~   72 (216)
                      ....|+|.|++|+|||.-++.+.+.
T Consensus        85 ~~QsIiisGeSGsGKTe~~k~il~y  109 (684)
T d1lkxa_          85 ENQCVIISGESGAGKTEASKKIMQF  109 (684)
T ss_dssp             CCEEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHH
Confidence            4478999999999999999988763

>d1j3ba1 c.91.1.1 (A:212-529) Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: PEP carboxykinase C-terminal domain
domain: Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase)
species: Thermus thermophilus [TaxId: 274]

Probab=92.05  E-value=0.043  Score=41.09  Aligned_cols=20  Identities=35%  Similarity=0.519  Sum_probs=16.8

Q ss_pred             CeeEEEEEecCCCcHHHHHH
Q 039455           48 DVRFIGICGMGGIGKTTLAK   67 (216)
Q Consensus        48 ~~~~i~I~G~~GiGKTtL~~   67 (216)
                      ++.+.++.|.+|+|||||..
T Consensus        13 ~~~valffGLSGTGKTTLs~   32 (318)
T d1j3ba1          13 EGDVAVFFGLSGTGKTTLST   32 (318)
T ss_dssp             TCCEEEEEECTTSCHHHHTC
T ss_pred             CCCEEEEEccCCCCcccccc
Confidence            34678999999999999864

>d2bmfa2 c.37.1.14 (A:178-482) Dengue virus helicase {Dengue virus type 2 [TaxId: 11060]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RNA helicase
domain: Dengue virus helicase
species: Dengue virus type 2 [TaxId: 11060]

Probab=91.90  E-value=0.059  Score=39.61  Aligned_cols=36  Identities=17%  Similarity=0.051  Sum_probs=21.7

Q ss_pred             CeeEEEEEecCCCcHHH-HHHHHHHHhcCCCCceEee
Q 039455           48 DVRFIGICGMGGIGKTT-LAKVLYNTLKDQFEASSFL   83 (216)
Q Consensus        48 ~~~~i~I~G~~GiGKTt-L~~~~~~~~~~~~~~~~~~   83 (216)
                      +++.++|.++.|+|||+ .+..+.......-..+.++
T Consensus         8 ~~~~~lv~~~TGsGKT~~~l~~~~~~~~~~~~~~lvi   44 (305)
T d2bmfa2           8 KKRLTIMDLHPGAGKTKRYLPAIVREAIKRGLRTLIL   44 (305)
T ss_dssp             TTCEEEECCCTTSSTTTTHHHHHHHHHHHHTCCEEEE
T ss_pred             cCCcEEEEECCCCCHHHHHHHHHHHHHHhcCCEEEEE
Confidence            45789999999999995 3334443322222334444

>d1jala1 c.37.1.8 (A:1-278) YchF GTP-binding protein N-terminal domain {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: YchF GTP-binding protein N-terminal domain
species: Haemophilus influenzae [TaxId: 727]

Probab=91.90  E-value=0.045  Score=40.23  Aligned_cols=22  Identities=36%  Similarity=0.510  Sum_probs=19.7

Q ss_pred             eEEEEEecCCCcHHHHHHHHHH
Q 039455           50 RFIGICGMGGIGKTTLAKVLYN   71 (216)
Q Consensus        50 ~~i~I~G~~GiGKTtL~~~~~~   71 (216)
                      -.|+|+|.+.+|||||...+-.
T Consensus         3 ~~~GivG~Pn~GKSTlf~~lt~   24 (278)
T d1jala1           3 FKCGIVGLPNVGKSTLFNALTK   24 (278)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHH
T ss_pred             ceEEEECCCCCCHHHHHHHHHC
Confidence            3689999999999999998875

>d2olra1 c.91.1.1 (A:228-540) Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: PEP carboxykinase C-terminal domain
domain: Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase)
species: Escherichia coli [TaxId: 562]

Probab=91.77  E-value=0.046  Score=40.78  Aligned_cols=20  Identities=35%  Similarity=0.483  Sum_probs=16.6

Q ss_pred             CeeEEEEEecCCCcHHHHHH
Q 039455           48 DVRFIGICGMGGIGKTTLAK   67 (216)
Q Consensus        48 ~~~~i~I~G~~GiGKTtL~~   67 (216)
                      ++.+.++.|.+|+|||||..
T Consensus        13 ~~~~alfFGLSGTGKTTLs~   32 (313)
T d2olra1          13 KGDVAVFFGLSGTGKTTLST   32 (313)
T ss_dssp             TSCEEEEECSTTSSHHHHHC
T ss_pred             CCCEEEEEccCCCCccccee
Confidence            34577899999999999873

>d1kk8a2 c.37.1.9 (A:1-28,A:77-837) Myosin S1, motor domain {Bay scallop (Aequipecten irradians) [TaxId: 31199]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Myosin S1, motor domain
species: Bay scallop (Aequipecten irradians) [TaxId: 31199]

Probab=91.62  E-value=0.11  Score=43.82  Aligned_cols=26  Identities=31%  Similarity=0.262  Sum_probs=22.5

Q ss_pred             CeeEEEEEecCCCcHHHHHHHHHHHh
Q 039455           48 DVRFIGICGMGGIGKTTLAKVLYNTL   73 (216)
Q Consensus        48 ~~~~i~I~G~~GiGKTtL~~~~~~~~   73 (216)
                      ....|+|.|++|+|||.-++.+.+.+
T Consensus       120 ~nQ~IiisGESGaGKTe~~K~il~yL  145 (789)
T d1kk8a2         120 ENQSCLITGESGAGKTENTKKVIMYL  145 (789)
T ss_dssp             SEEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             CCcEEEEEeCCCCCHHHHHHHHHHHH
Confidence            46899999999999999988887754

>d2mysa2 c.37.1.9 (A:4-33,A:80-843) Myosin S1, motor domain {Chicken (Gallus gallus), pectoral muscle [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Myosin S1, motor domain
species: Chicken (Gallus gallus), pectoral muscle [TaxId: 9031]

Probab=91.59  E-value=0.075  Score=45.01  Aligned_cols=26  Identities=31%  Similarity=0.336  Sum_probs=22.1

Q ss_pred             CeeEEEEEecCCCcHHHHHHHHHHHh
Q 039455           48 DVRFIGICGMGGIGKTTLAKVLYNTL   73 (216)
Q Consensus        48 ~~~~i~I~G~~GiGKTtL~~~~~~~~   73 (216)
                      ....|+|.|++|+|||.-++.+.+.+
T Consensus       122 ~~QsIiisGeSGaGKTe~~K~il~yL  147 (794)
T d2mysa2         122 ENQSILITGESGAGKTVNTKRVIQYF  147 (794)
T ss_dssp             CCEEEEEEECTTSCHHHHHHHHHHHH
T ss_pred             CCcEEEEEcCCCCCHHHHHHHHHHHH
Confidence            34789999999999999888887654

>d1br2a2 c.37.1.9 (A:80-789) Myosin S1, motor domain {Chicken (Gallus gallus), pectoral muscle [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Myosin S1, motor domain
species: Chicken (Gallus gallus), pectoral muscle [TaxId: 9031]

Probab=91.58  E-value=0.074  Score=44.48  Aligned_cols=26  Identities=31%  Similarity=0.290  Sum_probs=22.6

Q ss_pred             CeeEEEEEecCCCcHHHHHHHHHHHh
Q 039455           48 DVRFIGICGMGGIGKTTLAKVLYNTL   73 (216)
Q Consensus        48 ~~~~i~I~G~~GiGKTtL~~~~~~~~   73 (216)
                      ....|+|.|++|+|||.-.+.+.+.+
T Consensus        90 ~~Q~IiisGeSGaGKTe~~k~il~yL  115 (710)
T d1br2a2          90 EDQSILCTGESGAGKTENTKKVIQYL  115 (710)
T ss_dssp             CCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             CCcEEEEEeCCCCCHHHHHHHHHHHH
Confidence            45799999999999999999987754

>d2c78a3 c.37.1.8 (A:9-212) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain
species: Thermus thermophilus [TaxId: 274]

Probab=91.42  E-value=0.07  Score=37.27  Aligned_cols=21  Identities=38%  Similarity=0.392  Sum_probs=19.1

Q ss_pred             EEEEEecCCCcHHHHHHHHHH
Q 039455           51 FIGICGMGGIGKTTLAKVLYN   71 (216)
Q Consensus        51 ~i~I~G~~GiGKTtL~~~~~~   71 (216)
                      .|+|.|=.+.|||||+.++.+
T Consensus         5 ni~iiGhvd~GKSTL~~~Ll~   25 (204)
T d2c78a3           5 NVGTIGHVDHGKTTLTAALTY   25 (204)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEEeCCCCcHHHHHHHHHH
Confidence            589999999999999999875

>d1wxqa1 c.37.1.8 (A:1-319) GTP-binding protein PH0525 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein PH0525
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=91.40  E-value=0.055  Score=40.45  Aligned_cols=20  Identities=30%  Similarity=0.474  Sum_probs=18.4

Q ss_pred             EEEEecCCCcHHHHHHHHHH
Q 039455           52 IGICGMGGIGKTTLAKVLYN   71 (216)
Q Consensus        52 i~I~G~~GiGKTtL~~~~~~   71 (216)
                      |+|+|.+.+|||||...+-+
T Consensus         3 v~lvG~pn~GKStlfn~lt~   22 (319)
T d1wxqa1           3 IGVVGKPNVGKSTFFSAATL   22 (319)
T ss_dssp             EEEEECTTSSHHHHHHHHHC
T ss_pred             EeEECCCCCCHHHHHHHHHC
Confidence            79999999999999999854

>d2akab1 c.37.1.8 (B:6-304) Dynamin G domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Dynamin G domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=91.38  E-value=0.09  Score=38.76  Aligned_cols=23  Identities=17%  Similarity=0.310  Sum_probs=21.1

Q ss_pred             eeEEEEEecCCCcHHHHHHHHHH
Q 039455           49 VRFIGICGMGGIGKTTLAKVLYN   71 (216)
Q Consensus        49 ~~~i~I~G~~GiGKTtL~~~~~~   71 (216)
                      .+.|+|+|.-++|||||+..+.+
T Consensus        26 ~P~ivvvG~~SsGKSsliNaLlg   48 (299)
T d2akab1          26 LPQIAVVGGQSAGKSSVLENFVG   48 (299)
T ss_dssp             CCEEEEEEBTTSCHHHHHHHHHT
T ss_pred             CCeEEEEcCCCCCHHHHHHHHhC
Confidence            45689999999999999999997

>d1g5ta_ c.37.1.11 (A:) ATP:corrinoid adenosyltransferase CobA {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: ATP:corrinoid adenosyltransferase CobA
species: Salmonella typhimurium [TaxId: 90371]

Probab=91.11  E-value=1  Score=29.68  Aligned_cols=42  Identities=26%  Similarity=0.281  Sum_probs=27.7

Q ss_pred             HHHhCCc-eEEEEEeCCC--------CHHHHHHhhcCCCCCCCCcEEEEEeCCc
Q 039455          125 RWRLCRK-RVLVVLDDVD--------QLEQLQALAGNHDWFGFGSRIIITTRDE  169 (216)
Q Consensus       125 ~~~l~~~-~~llvlDd~~--------~~~~~~~l~~~~~~~~~~~~il~tsr~~  169 (216)
                      ...+.+. --+||||++.        ..+++-+++..-   ..+..+|+|-|+.
T Consensus        87 ~~~~~~~~~dllILDEi~~Ai~~gli~~~~v~~ll~~r---p~~~evVlTGr~~  137 (157)
T d1g5ta_          87 KRMLADPLLDMVVLDELTYMVAYDYLPLEEVISALNAR---PGHQTVIITGRGC  137 (157)
T ss_dssp             HHHTTCTTCSEEEEETHHHHHHTTSSCHHHHHHHHHTS---CTTCEEEEECSSC
T ss_pred             HHHhhcCccCEEeHHHHHHHHHcCCCCHHHHHHHHHhC---CCCCEEEEECCCC
Confidence            3344444 5599999872        445666666543   3567899999975

>d1w7ja2 c.37.1.9 (A:63-792) Myosin S1, motor domain {Chicken (Gallus gallus), Va isoform [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Myosin S1, motor domain
species: Chicken (Gallus gallus), Va isoform [TaxId: 9031]

Probab=90.99  E-value=0.14  Score=42.83  Aligned_cols=26  Identities=31%  Similarity=0.302  Sum_probs=22.1

Q ss_pred             CeeEEEEEecCCCcHHHHHHHHHHHh
Q 039455           48 DVRFIGICGMGGIGKTTLAKVLYNTL   73 (216)
Q Consensus        48 ~~~~i~I~G~~GiGKTtL~~~~~~~~   73 (216)
                      ....|+|.|++|+|||.-.+.+.+.+
T Consensus        93 ~~Q~IiisGeSGsGKTe~~k~il~~l  118 (730)
T d1w7ja2          93 RNQSIIVSGESGAGKTVSAKYAMRYF  118 (730)
T ss_dssp             CCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             CCeEEEEEeCCCCCHHHHHHHHHHHH
Confidence            35789999999999999999887643

>d1ii2a1 c.91.1.1 (A:201-523) Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) {Trypanosoma cruzi [TaxId: 5693]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: PEP carboxykinase C-terminal domain
domain: Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase)
species: Trypanosoma cruzi [TaxId: 5693]

Probab=90.88  E-value=0.064  Score=40.14  Aligned_cols=19  Identities=37%  Similarity=0.517  Sum_probs=16.1

Q ss_pred             CeeEEEEEecCCCcHHHHH
Q 039455           48 DVRFIGICGMGGIGKTTLA   66 (216)
Q Consensus        48 ~~~~i~I~G~~GiGKTtL~   66 (216)
                      ++-+.++.|.+|+|||||.
T Consensus        13 ~gd~alfFGLSGTGKTTLs   31 (323)
T d1ii2a1          13 QGDVTVFFGLSGTGKTTLS   31 (323)
T ss_dssp             TCCEEEEECCTTSSHHHHH
T ss_pred             CCCEEEEEccCCCCcccce
Confidence            3456789999999999998

>d1jwyb_ c.37.1.8 (B:) Dynamin G domain {Dictyostelium discoideum [TaxId: 44689]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Dynamin G domain
species: Dictyostelium discoideum [TaxId: 44689]

Probab=90.49  E-value=0.073  Score=39.48  Aligned_cols=23  Identities=17%  Similarity=0.283  Sum_probs=21.2

Q ss_pred             eeEEEEEecCCCcHHHHHHHHHH
Q 039455           49 VRFIGICGMGGIGKTTLAKVLYN   71 (216)
Q Consensus        49 ~~~i~I~G~~GiGKTtL~~~~~~   71 (216)
                      .+.|+|+|.-++|||||+..+.+
T Consensus        24 lP~ivVvG~~ssGKSSliNaLlG   46 (306)
T d1jwyb_          24 LPQIVVVGSQSSGKSSVLENIVG   46 (306)
T ss_dssp             CCEEEEEECSSSSHHHHHHHHHT
T ss_pred             CCeEEEEeCCCCCHHHHHHHHhC
Confidence            46789999999999999999987

>d1c9ka_ c.37.1.11 (A:) Adenosylcobinamide kinase/adenosylcobinamide phosphate guanylyltransferase CobU {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Adenosylcobinamide kinase/adenosylcobinamide phosphate guanylyltransferase CobU
species: Salmonella typhimurium [TaxId: 90371]

Probab=90.43  E-value=0.15  Score=34.88  Aligned_cols=29  Identities=24%  Similarity=0.285  Sum_probs=22.9

Q ss_pred             EEEEecCCCcHHHHHHHHHHHhcCCCCceEeec
Q 039455           52 IGICGMGGIGKTTLAKVLYNTLKDQFEASSFLA   84 (216)
Q Consensus        52 i~I~G~~GiGKTtL~~~~~~~~~~~~~~~~~~~   84 (216)
                      +.|+|+.++|||..|..++.    .++.+.|+.
T Consensus         2 iLVtGGarSGKS~~AE~l~~----~~~~~~YiA   30 (180)
T d1c9ka_           2 ILVTGGARSGKSRHAEALIG----DAPQVLYIA   30 (180)
T ss_dssp             EEEEECTTSSHHHHHHHHHC----SCSSEEEEE
T ss_pred             EEEECCCCccHHHHHHHHHh----cCCCcEEEE
Confidence            68999999999999988752    345666765

>d1t6na_ c.37.1.19 (A:) Spliceosome RNA helicase BAT1 (UAP56) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: Spliceosome RNA helicase BAT1 (UAP56)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=89.16  E-value=1  Score=30.91  Aligned_cols=17  Identities=24%  Similarity=0.198  Sum_probs=14.1

Q ss_pred             eEEEEEecCCCcHHHHH
Q 039455           50 RFIGICGMGGIGKTTLA   66 (216)
Q Consensus        50 ~~i~I~G~~GiGKTtL~   66 (216)
                      +-+++..+.|+|||.-.
T Consensus        39 ~dvl~~A~TGsGKTla~   55 (207)
T d1t6na_          39 MDVLCQAKSGMGKTAVF   55 (207)
T ss_dssp             CCEEEECCTTSCHHHHH
T ss_pred             CCeEEEecccccccccc
Confidence            56899999999999543

>d1w36b1 c.37.1.19 (B:1-485) Exodeoxyribonuclease V beta chain (RecB), N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: Exodeoxyribonuclease V beta chain (RecB), N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=88.98  E-value=0.12  Score=40.39  Aligned_cols=25  Identities=28%  Similarity=0.177  Sum_probs=18.8

Q ss_pred             eeEEEEEecCCCcHHH-HHHHHHHHh
Q 039455           49 VRFIGICGMGGIGKTT-LAKVLYNTL   73 (216)
Q Consensus        49 ~~~i~I~G~~GiGKTt-L~~~~~~~~   73 (216)
                      .++++|.+.+|+|||+ |+..+++.+
T Consensus        16 ~g~~lv~A~AGsGKT~~l~~r~~~ll   41 (485)
T d1w36b1          16 QGERLIEASAGTGKTFTIAALYLRLL   41 (485)
T ss_dssp             SSCEEEECCTTSCHHHHHHHHHHHHH
T ss_pred             CCCeEEEEcCchHHHHHHHHHHHHHH
Confidence            4678999999999995 455565544

>d1rifa_ c.37.1.23 (A:) DNA helicase UvsW {Bacteriophage T4 [TaxId: 10665]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: DNA helicase UvsW
domain: DNA helicase UvsW
species: Bacteriophage T4 [TaxId: 10665]

Probab=86.59  E-value=1.1  Score=32.42  Aligned_cols=43  Identities=9%  Similarity=-0.075  Sum_probs=32.3

Q ss_pred             cccccchhHHHHHHHHHhcCCCCeeEEEEEecCCCcHHHHHHHHHHHh
Q 039455           26 DGLVGIASRMEKMNGYLEAGLDDVRFIGICGMGGIGKTTLAKVLYNTL   73 (216)
Q Consensus        26 ~~~vgR~~~~~~l~~~l~~~~~~~~~i~I~G~~GiGKTtL~~~~~~~~   73 (216)
                      ..+--|+-+.+.+..++..     ...++.-|.|+|||.++-.++..+
T Consensus       110 ~~~~~rdyQ~~av~~~l~~-----~~~il~~pTGsGKT~i~~~i~~~~  152 (282)
T d1rifa_         110 KRIEPHWYQKDAVFEGLVN-----RRRILNLPTSAGRSLIQALLARYY  152 (282)
T ss_dssp             EECCCCHHHHHHHHHHHHH-----SEEEECCCTTSCHHHHHHHHHHHH
T ss_pred             CccccchHHHHHHHHHHhc-----CCceeEEEcccCccHHHHHHHHHh
Confidence            3467788888888888875     245666799999998887776544

>d1t5la1 c.37.1.19 (A:2-414) Nucleotide excision repair enzyme UvrB {Bacillus caldotenax [TaxId: 1395]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: Nucleotide excision repair enzyme UvrB
species: Bacillus caldotenax [TaxId: 1395]

Probab=85.98  E-value=0.71  Score=35.65  Aligned_cols=42  Identities=24%  Similarity=0.332  Sum_probs=31.8

Q ss_pred             cchhH-HHHHHHHHhcCCCCeeEEEEEecCCCcHHHHHHHHHHHhc
Q 039455           30 GIASR-MEKMNGYLEAGLDDVRFIGICGMGGIGKTTLAKVLYNTLK   74 (216)
Q Consensus        30 gR~~~-~~~l~~~l~~~~~~~~~i~I~G~~GiGKTtL~~~~~~~~~   74 (216)
                      |-+.+ ++.|.+.+..+   .+...|.|.+|+|||.++..++.+..
T Consensus        14 gDQP~aI~~l~~~l~~g---~~~q~l~GltGS~ka~~iA~l~~~~~   56 (413)
T d1t5la1          14 GDQPQAIAKLVDGLRRG---VKHQTLLGATGTGKTFTISNVIAQVN   56 (413)
T ss_dssp             TTHHHHHHHHHHHHHHT---CSEEEEEECTTSCHHHHHHHHHHHHT
T ss_pred             CCCHHHHHHHHHHHhcC---CCcEEEeCCCCcHHHHHHHHHHHHhC
Confidence            55544 77777777654   25677999999999999988887653

>d1p3da1 c.5.1.1 (A:11-106) UDP-N-acetylmuramate-alanine ligase MurC {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: MurCD N-terminal domain
superfamily: MurCD N-terminal domain
family: MurCD N-terminal domain
domain: UDP-N-acetylmuramate-alanine ligase MurC
species: Haemophilus influenzae [TaxId: 727]

Probab=85.89  E-value=0.4  Score=28.89  Aligned_cols=26  Identities=35%  Similarity=0.622  Sum_probs=21.9

Q ss_pred             CCeeEEEEEecCCCcHHHHHHHHHHH
Q 039455           47 DDVRFIGICGMGGIGKTTLAKVLYNT   72 (216)
Q Consensus        47 ~~~~~i~I~G~~GiGKTtL~~~~~~~   72 (216)
                      .....+-+.|.+|+|-|.||+.+..+
T Consensus         6 ~~~~~ihfiGigG~GMs~LA~~L~~~   31 (96)
T d1p3da1           6 RRVQQIHFIGIGGAGMSGIAEILLNE   31 (96)
T ss_dssp             TTCCEEEEETTTSTTHHHHHHHHHHH
T ss_pred             hhCCEEEEEEECHHHHHHHHHHHHhC
Confidence            34578999999999999999888763

>d2b4aa1 c.23.1.1 (A:2-119) Hypothetical protein BH3024 {Bacillus halodurans [TaxId: 86665]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: CheY-like
family: CheY-related
domain: Hypothetical protein BH3024
species: Bacillus halodurans [TaxId: 86665]

Probab=85.56  E-value=2.6  Score=25.88  Aligned_cols=85  Identities=12%  Similarity=0.103  Sum_probs=45.3

Q ss_pred             ccccccchhhhHHHHHHHhCCc-eEEEEEe----CCCCHHHHHHhhcCCCCCCCCcEE-EEEeCCchhhhccCCcceEEe
Q 039455          110 RNLIIWDVHKGINLIRWRLCRK-RVLVVLD----DVDQLEQLQALAGNHDWFGFGSRI-IITTRDEHVLKGHGVTNIYKV  183 (216)
Q Consensus       110 ~~~~~~~~~~~~~~l~~~l~~~-~~llvlD----d~~~~~~~~~l~~~~~~~~~~~~i-l~tsr~~~~~~~~~~~~~~~l  183 (216)
                      .++.........+.+....+.. .-++++|    +.+..+-...+...    .+...| ++|+++...........-|-.
T Consensus        25 ~g~~v~~~~~~~~al~~l~~~~~~dliilD~~lp~~~G~el~~~ir~~----~~~~pii~lt~~~~~~~~~~~~~~dyl~  100 (118)
T d2b4aa1          25 LGAEVTVHPSGSAFFQHRSQLSTCDLLIVSDQLVDLSIFSLLDIVKEQ----TKQPSVLILTTGRHELIESSEHNLSYLQ  100 (118)
T ss_dssp             TTCEEEEESSHHHHHHTGGGGGSCSEEEEETTCTTSCHHHHHHHHTTS----SSCCEEEEEESCC--CCCCSSSCEEEEE
T ss_pred             cCCCeEEECCHHHHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHhc----CCCCcEEEEECCccHHHHHhhcCCCEEE
Confidence            3333333333344444444444 4588888    44555556666543    233445 455555433222222225778


Q ss_pred             cCCChHHHHHHHhhh
Q 039455          184 RGLDYVEALQLFHLK  198 (216)
Q Consensus       184 ~~l~~~~~~~ll~~~  198 (216)
                      +|++.++..+-++++
T Consensus       101 KP~~~~eL~~~i~~~  115 (118)
T d2b4aa1         101 KPFAISELRAAIDYH  115 (118)
T ss_dssp             SSCCHHHHHHHHHHT
T ss_pred             CCCCHHHHHHHHHHH
Confidence            999999888877764

>d1kk1a3 c.37.1.8 (A:6-200) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Archaeon Pyrococcus abyssi [TaxId: 29292]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain
species: Archaeon Pyrococcus abyssi [TaxId: 29292]

Probab=84.98  E-value=0.28  Score=33.52  Aligned_cols=21  Identities=48%  Similarity=0.558  Sum_probs=19.0

Q ss_pred             EEEEEecCCCcHHHHHHHHHH
Q 039455           51 FIGICGMGGIGKTTLAKVLYN   71 (216)
Q Consensus        51 ~i~I~G~~GiGKTtL~~~~~~   71 (216)
                      .|+|.|=.+.|||||+..+.+
T Consensus         7 nIaiiGhvd~GKSTL~~~L~g   27 (195)
T d1kk1a3           7 NIGMVGHVDHGKTTLTKALTG   27 (195)
T ss_dssp             EEEEECSTTSSHHHHHHHHHT
T ss_pred             EEEEEeccCCcHHHHHHHHHh
Confidence            579999999999999999975

>d1d2ea3 c.37.1.8 (A:55-250) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Cow (Bos taurus), mitochondrial [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain
species: Cow (Bos taurus), mitochondrial [TaxId: 9913]

Probab=84.90  E-value=0.32  Score=33.48  Aligned_cols=21  Identities=33%  Similarity=0.408  Sum_probs=19.0

Q ss_pred             EEEEEecCCCcHHHHHHHHHH
Q 039455           51 FIGICGMGGIGKTTLAKVLYN   71 (216)
Q Consensus        51 ~i~I~G~~GiGKTtL~~~~~~   71 (216)
                      .|+|.|=.+.|||||+..+.+
T Consensus         5 ni~iiGHvd~GKSTL~~~l~~   25 (196)
T d1d2ea3           5 NVGTIGHVDHGKTTLTAAITK   25 (196)
T ss_dssp             EEEEESSTTSSHHHHHHHHHH
T ss_pred             EEEEEeCCCCcHHHHHHHHHH
Confidence            589999999999999998875

>d1jnya3 c.37.1.8 (A:4-227) Elongation factor eEF-1alpha, N-terminal (G) domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor eEF-1alpha, N-terminal (G) domain
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=84.89  E-value=0.35  Score=33.93  Aligned_cols=21  Identities=29%  Similarity=0.219  Sum_probs=18.9

Q ss_pred             EEEEEecCCCcHHHHHHHHHH
Q 039455           51 FIGICGMGGIGKTTLAKVLYN   71 (216)
Q Consensus        51 ~i~I~G~~GiGKTtL~~~~~~   71 (216)
                      .|+|.|=-+.|||||+..+..
T Consensus         5 Ni~viGHVd~GKTTL~~~Ll~   25 (224)
T d1jnya3           5 NLIVIGHVDHGKSTLVGRLLM   25 (224)
T ss_dssp             EEEEEESTTSSHHHHHHHHHH
T ss_pred             EEEEEecCCCCHHHHHHHHHH
Confidence            588999999999999998864

>d2qn6a3 c.37.1.8 (A:2-206) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain
species: Sulfolobus solfataricus [TaxId: 2287]

Probab=83.69  E-value=0.36  Score=33.30  Aligned_cols=21  Identities=38%  Similarity=0.514  Sum_probs=19.2

Q ss_pred             EEEEEecCCCcHHHHHHHHHH
Q 039455           51 FIGICGMGGIGKTTLAKVLYN   71 (216)
Q Consensus        51 ~i~I~G~~GiGKTtL~~~~~~   71 (216)
                      .|+|.|-...|||||+..+.+
T Consensus        10 ni~iiGhVd~GKSTL~~~L~~   30 (205)
T d2qn6a3          10 NIGVVGHVDHGKTTLVQAITG   30 (205)
T ss_dssp             EEEEECSTTSSHHHHHHHHHS
T ss_pred             EEEEEEccCCcHHHHHHHHHh
Confidence            699999999999999999975

>d1zunb3 c.37.1.8 (B:16-237) Sulfate adenylate transferase subunit cysN/C, EF-Tu domain G-like domain {Pseudomonas syringae pv. tomato [TaxId: 323]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Sulfate adenylate transferase subunit cysN/C, EF-Tu domain G-like domain
species: Pseudomonas syringae pv. tomato [TaxId: 323]

Probab=83.36  E-value=0.43  Score=33.52  Aligned_cols=24  Identities=29%  Similarity=0.282  Sum_probs=20.6

Q ss_pred             eeEEEEEecCCCcHHHHHHHHHHH
Q 039455           49 VRFIGICGMGGIGKTTLAKVLYNT   72 (216)
Q Consensus        49 ~~~i~I~G~~GiGKTtL~~~~~~~   72 (216)
                      ...+++.|=...|||||+.++.+.
T Consensus         9 ~~~i~viGHVd~GKSTL~~~Ll~~   32 (222)
T d1zunb3           9 MLRFLTCGNVDDGKSTLIGRLLHD   32 (222)
T ss_dssp             EEEEEEECCTTSSHHHHHHHHHHH
T ss_pred             cceEEEEcCCCCCHHHHHHHHHHH
Confidence            455799999999999999999753

>d1e69a_ c.37.1.12 (A:) Smc head domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Smc head domain
species: Thermotoga maritima [TaxId: 2336]

Probab=81.72  E-value=0.66  Score=33.72  Aligned_cols=21  Identities=29%  Similarity=0.528  Sum_probs=18.6

Q ss_pred             eEEEEEecCCCcHHHHHHHHH
Q 039455           50 RFIGICGMGGIGKTTLAKVLY   70 (216)
Q Consensus        50 ~~i~I~G~~GiGKTtL~~~~~   70 (216)
                      +.-+|+|++|+|||++++++.
T Consensus        25 ~lnvlvG~NgsGKS~iL~Ai~   45 (308)
T d1e69a_          25 RVTAIVGPNGSGKSNIIDAIK   45 (308)
T ss_dssp             SEEEEECCTTTCSTHHHHHHH
T ss_pred             CeEEEECCCCCcHHHHHHHHH
Confidence            477999999999999998874

>d1oywa2 c.37.1.19 (A:1-206) RecQ helicase domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: RecQ helicase domain
species: Escherichia coli [TaxId: 562]

Probab=81.16  E-value=0.44  Score=32.65  Aligned_cols=32  Identities=19%  Similarity=0.080  Sum_probs=21.6

Q ss_pred             HHHHHHHHHhcCCCCeeEEEEEecCCCcHHHHHHHHH
Q 039455           34 RMEKMNGYLEAGLDDVRFIGICGMGGIGKTTLAKVLY   70 (216)
Q Consensus        34 ~~~~l~~~l~~~~~~~~~i~I~G~~GiGKTtL~~~~~   70 (216)
                      +.+.+...+.+     ..+.+..|.|+|||..+....
T Consensus        30 Q~~ai~~~l~g-----~~vlv~apTGsGKT~~~~~~~   61 (206)
T d1oywa2          30 QEEIIDTVLSG-----RDCLVVMPTGGGKSLCYQIPA   61 (206)
T ss_dssp             HHHHHHHHHTT-----CCEEEECSCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHcC-----CCEEEEcCCCCCCcchhhhhh
Confidence            55555555542     357889999999998764443

>d1c4oa1 c.37.1.19 (A:2-409) Nucleotide excision repair enzyme UvrB {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: Nucleotide excision repair enzyme UvrB
species: Thermus thermophilus [TaxId: 274]

Probab=80.50  E-value=1.6  Score=33.53  Aligned_cols=42  Identities=26%  Similarity=0.422  Sum_probs=32.5

Q ss_pred             cchhH-HHHHHHHHhcCCCCeeEEEEEecCCCcHHHHHHHHHHHhc
Q 039455           30 GIASR-MEKMNGYLEAGLDDVRFIGICGMGGIGKTTLAKVLYNTLK   74 (216)
Q Consensus        30 gR~~~-~~~l~~~l~~~~~~~~~i~I~G~~GiGKTtL~~~~~~~~~   74 (216)
                      |.+.+ ++.|.+.|..+   .+.+.|.|.+|+|||.++..++....
T Consensus        11 ~dqp~aI~~l~~~L~~g---~~~~~L~GlsgS~ka~~~A~l~~~~~   53 (408)
T d1c4oa1          11 GDQPKAIAGLVEALRDG---ERFVTLLGATGTGKTVTMAKVIEALG   53 (408)
T ss_dssp             TTHHHHHHHHHHHHHTT---CSEEEEEECTTSCHHHHHHHHHHHHT
T ss_pred             CCCHHHHHHHHHHHhcC---CCcEEEecCCCCHHHHHHHHHHHHhC
Confidence            55544 78888888753   25679999999999999998887654

>d1bg2a_ c.37.1.9 (A:) Kinesin {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Kinesin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=80.20  E-value=1  Score=33.40  Aligned_cols=19  Identities=26%  Similarity=0.044  Sum_probs=16.6

Q ss_pred             CeeEEEEEecCCCcHHHHH
Q 039455           48 DVRFIGICGMGGIGKTTLA   66 (216)
Q Consensus        48 ~~~~i~I~G~~GiGKTtL~   66 (216)
                      ....|..+|..|+|||..+
T Consensus        75 ~n~~i~aYGqtgSGKTyT~   93 (323)
T d1bg2a_          75 YNGTIFAYGQTSSGKTHTM   93 (323)
T ss_dssp             CCEEEEEECSTTSSHHHHH
T ss_pred             CCcceeeecccCCCCceec
Confidence            4589999999999999765