Citrus Sinensis ID: 039475

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280------
Protein Sequence
MHDIVHLFAQYLTRREFAAIEVDGDENPLSLTNSCQEKLRHLTLMLGLPTKFPVSIFDAKKLRSLSLFYDSKGQSAASPVLQGLFDQLTCLRALKIEELWYGDQTIEIPKGLENLIHLRYLKLSAVEELSETCYCPSLKRLPQGRGKLINLRHLIFDKDYLAYMANGFERLTSLRTLSGFTVARVGGKYSSEACNLEGLRNLNHLRQFLRICGLGNLQMRLKINAHLEKKKNLVHLTLDFDKGEDEEDEDYEEAPNLMNEENEAKQEAICEALQAPPNIVIRNNPL
Secondary Structure (PSIPRED)
cHHHHHHHHHHHHHHHEEEEEEccccccccccccccccEEEEEEEcccccccccccccccccEEEEcccccccccccccccccccccccEEEEEEcccccccccccccccccccccccccccccccccccccccccccccccHHHHccccccEEEEcccccccccccccccccccccccEEEcccccccccccccHHccccccccccEEEEcccccccccHHHHHccccccccccEEEEEcccccccccccccccccccHHHHHHHHHHHHccccccccccccccc
Secondary Structure Prediction (SSPRO)
cccHHHHHHHHHcccEEEEEEEccccccccccccccccEEEEEEEEccccccccHHHcccccEEEEEEcccccccccccHHHHHHHHHccEEEEEccHcccccccccccccHcccHEEEEEccccccHEEEHccccHHHHccHHHHHHEEEHEEcccccccccccccccccHHHccccEEEEEccccccccccccHHHHHHHHHcccEEEEcccccccHHHHHHHHHcccccccEEEEEEcccccccccHccccccccccccHHHHHHHHHHcccccccEEEcccc
Coil and Loop (DISEMBL)
MHDIVHLFAQYLTRREFAaievdgdenplsltnSCQEKLRHLTLmlglptkfpvsifdakkLRSLSLfydskgqsaaspvLQGLFDQLTCLRALKIeelwygdqtieipKGLENLIHLRYLKLSAVEElsetcycpslkrlpqgrgklinlrhlifdKDYLAYMANGFERLTSLrtlsgftvarvggkysseacnleGLRNLNHLRQFLRICGLGNLQMRLKINAHLEKKKNLVHLtldfdkgedeededyeeapnlmneENEAKQEAICEAlqappnivirnnpl
Flexible Loop (DISEMBL)
MHDIVHLFAQYLTRREFAAIEVDGDENPLSLTNSCQEKLRHLTLMLGLPTKFPVSIFDAKKLRSLSLFYDSKGQSAASPVLQGLFDQLTCLRALKIEELWYGDQTIEIPKGLENLIHLRYLKLSAVEELSETcycpslkrlpqgrgklINLRHLIFDKDYLAYMANGFERLTSLRTLSGFTVARVGGKYSSEACNLEGLRNLNHLRQFLRICGLGNLQMRLKINAHlekkknlvhltldfdkgedEEDEDYEEAPNLMNEENEAKQEAICealqappnivirnnpl
Low Complexity Region (SEG)
MHDIVHLFAQYLTRREFAAIEVDGDENPLSLTNSCQEKLRHLTLMLGLPTKFPVSIFDAKKLRSLSLFYDSKGQSAASPVLQGLFDQLTCLRALKIEELWYGDQTIEIPKGLENLIHLRYLKLSAVEELSETCYCPSLKRLPQGRGKLINLRHLIFDKDYLAYMANGFERLTSLRTLSGFTVARVGGKYSSEACNLEGLRNLNHLRQFLRICGLGNLQMRLKINAHLEKKKNLVHLTLdfdkgedeededyeeAPNLMNEENEAKQEAICEALQAPPNIVIRNNPL
Disordered region (IsUnstruct)
***IVHLFAQYLTRREFAAIEVDGDENPLSLTNSCQEKLRHLTLMLGLPTKFPVSIFDAKKLRSLSLFYDSKGQSAASPVLQGLFDQLTCLRALKIEELWYGDQTIEIPKGLENLIHLRYLKLSAVEELSETCYCPSLKRLPQGRGKLINLRHLIFDKDYLAYMANGFERLTSLRTLSGFTVARVGGKYSSEACNLEGLRNLNHLRQFLRICGLGNLQMRLKINAHLEKKKNLVHLTLD***********************************************
Disordered Region (DISOPRED)
MHDIVHLFAQYLTRREFAAIEVDG*********SCQEKLRHLTLMLGLPTKFPVSIFDAKKLRSLSLFYDSKGQSAASPVLQGLFDQLTCLRALKIEELWYGDQTIEIPKGLENLIHLRYLKLSAVEELSETCYCPSLKRLPQGRGKLINLRHLIFDKDYLAYMANGFERLTSLRTLSGFTVARVGGKYSSEACNLEGLRNLNHLRQFLRICGLGNLQMRLKINAHLEKKKNLVHLTLDFDKGEDEEDEDYEE*******ENEAKQEAICEALQAPPNIVIRNNP*
Disordered Region (DISEMBL)
MHDIVHLFAQYLTRREFAAIEVDGDENPLSLTNSCQEKLRHLTLMLGLPTKFPVSIFDAKKLRSLSLFYDSKGQSAASPVLQGLFDQLTCLRALKIEELWYGDQTIEIPKGLENLIHLRYLKLSAVEELSETCYCPSLKRLPQGRGKLINLRHLIFDKDYLAYMANGFERLTSLRTLSGFTVARVGGKYSSEACNLEGLRNLNHLRQFLRICGLGNLQMRLKINAHLEKKKNLVHLTLDFDK************PNLMNEENEAKQEAICEALQAPPNIVIRNNPL
Disordered Region (DISPRO)
*HDIVHLFAQYLTRREFAAIEVDGDENPLSLTNSCQEKLRHLTLMLGLPTKFPVSIFDAKKLRSLSLFYDSKGQSAASPVLQGLFDQLTCLRALKIEELWYGDQTIEIPKGLENLIHLRYLKLSAVEELSETCYCPSLKRLPQGRGKLINLRHLIFDKDYLAYMANGFERLTSLRTLSGFTVARVGGKYSSEACNLEGLRNLNHLRQFLRICGLGNLQMRLKINAHLEKKKNLVHLTLDFDKG*********EAPNLMNEENEAKQEAICEALQAPPNIVIRN***
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
ooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MHDIVHLFAQYLTRREFAAIEVDGDENPLSLTNSCQEKLRHLTLMLGLPTKFPVSIFDAKKLRSLSLFYDSKGQSAASPVLQGLFDQLTCLRALKIEELWYGDQTIEIPKGLENLIHLRYLKLSAVEELSETCYCPSLKRLPQGRGKLINLRHLIFDKDYLAYMANGFERLTSLRTLSGFTVARVGGKYSSEACNLEGLRNLNHLRQFLRICGLGNLQMRLKINAHLEKKKNLVHLTLDFDKGEDEEDEDYEEAPNLMNEENEAKQEAICEALQAPPNIVIRNNPL
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	286	2.2.26 [Sep-21-2011]
Q9LRR5	1424	Putative disease resistan	yes	no	0.527	0.106	0.340	1e-09
Q9LRR4	1054	Putative disease resistan	no	no	0.856	0.232	0.280	3e-08
Q7XA40	992	Putative disease resistan	N/A	no	0.625	0.180	0.290	2e-07
Q7XA39	988	Putative disease resistan	N/A	no	0.531	0.153	0.294	5e-06
Q7XA42	979	Putative disease resistan	N/A	no	0.493	0.144	0.303	0.0002
Q7XBQ9	970	Disease resistance protei	N/A	no	0.412	0.121	0.319	0.0005

>sp|Q9LRR5|DRL21_ARATH Putative disease resistance protein At3g14460 OS=Arabidopsis thaliana GN=At3g14460 PE=3 SV=1

 Score = 63.9 bits (154), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 60/176 (34%), Positives = 83/176 (47%), Gaps = 25/176 (14%)

Query: 80  VLQGLFDQLTCLRALKIEELWYGDQTIEIPKGLENLIHLRYLKLSA--VEELSE-TCY-- 134
           VL  L + L+ LR L +       Q   +PK L+ L  LRYL LS+  ++EL E  C   
Sbjct: 564 VLNPLLNALSGLRILSLSHY----QITNLPKSLKGLKLLRYLDLSSTKIKELPEFVCTLC 619

Query: 135 ---------CPSLKRLPQGRGKLINLRHLIFDKDYLAYMANGFERLTSLRTLSGFTVARV 185
                    C  L  LP+   +LINLR L      L  M  G ++L SL+ LS F + R+
Sbjct: 620 NLQTLLLSNCRDLTSLPKSIAELINLRLLDLVGTPLVEMPPGIKKLRSLQKLSNFVIGRL 679

Query: 186 GGKYSSEACNLEGLRNLNHLRQFLRICGLGNLQMRLKI-NAHLEKKKNLVHLTLDF 240
            G        L  L+ L+HLR  LRI  L N+    +  +A L++K  L  L L +
Sbjct: 680 SG------AGLHELKELSHLRGTLRISELQNVAFASEAKDAGLKRKPFLDGLILKW 729

Potential disease resistance protein.
Arabidopsis thaliana (taxid: 3702)

>sp|Q9LRR4|R13L1_ARATH Putative disease resistance RPP13-like protein 1 OS=Arabidopsis thaliana GN=RPPL1 PE=3 SV=1

 Score = 59.3 bits (142), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 80/285 (28%), Positives = 123/285 (43%), Gaps = 40/285 (14%)

Query: 1   MHDIVHLFAQYLTRREFAAIEVDGDENPLSLTNSCQEKLRHLTLM---LGLPTKFPVSIF 57
           MHD ++  AQ+ +  EF++   DG +  +S      E+ R+L+ +      P +F  ++ 
Sbjct: 492 MHDFINELAQFASG-EFSSKFEDGCKLQVS------ERTRYLSYLRDNYAEPMEFE-ALR 543

Query: 58  DAKKLRS---LSLFYDSKGQSAASPVLQGLFDQLTCLRALKIEELWYGDQTIEIPKGLEN 114
           + K LR+   LSL   S+       V + L   LT LR L +    Y    +  P   +N
Sbjct: 544 EVKFLRTFLPLSLTNSSRSCCLDQMVSEKLLPTLTRLRVLSLSH--YKIARLP-PDFFKN 600

Query: 115 LIHLRYLKLS--AVEELSET------------CYCPSLKRLPQGRGKLINLRHLIFDKDY 160
           + H R+L LS   +E+L ++             YC SLK LP     LINLR+L      
Sbjct: 601 ISHARFLDLSRTELEKLPKSLCYMYNLQTLLLSYCSSLKELPTDISNLINLRYLDLIGTK 660

Query: 161 LAYMANGFERLTSLRTLSGFTVARVGGKYSSEACNLEGLRNLNHLRQFLRICGLGNLQMR 220
           L  M   F RL SL+TL+ F V+   G   SE   L  L     + +  R+  + +    
Sbjct: 661 LRQMPRRFGRLKSLQTLTTFFVSASDGSRISELGGLHDLHGKLKIVELQRVVDVAD---- 716

Query: 221 LKINAHLEKKKNLVHLTLDFDKGEDEEDEDYEEAPNLMNEENEAK 265
               A+L  KK+L  +   +  G        E   N    +NEA+
Sbjct: 717 -AAEANLNSKKHLREIDFVWRTGSSSS----ENNTNPHRTQNEAE 756

Potential disease resistance protein.

Arabidopsis thaliana (taxid: 3702)

>sp|Q7XA40|RGA3_SOLBU Putative disease resistance protein RGA3 OS=Solanum bulbocastanum GN=RGA3 PE=2 SV=2

 Score = 56.6 bits (135), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 65/224 (29%), Positives = 98/224 (43%), Gaps = 45/224 (20%)

Query: 71  SKGQSAASPVLQGLFDQLTCLRALKIEELWYGDQTIEIPKGLENLIHLRYLKLSAVEELS 130
           S+  S+ SP    LF +   LR L +       +  ++P  + +L+HLRYL LS  +  S
Sbjct: 520 SEVVSSYSP---SLFKRFVSLRVLNLS----NSEFEQLPSSVGDLVHLRYLDLSGNKICS 572

Query: 131 --------------ETCYCPSLKRLPQGRGKLINLRHLIFDKDYLAYMANGFERLTSLRT 176
                         +   C SL  LP+   KL +LR+L+ D   L  M      LT L+T
Sbjct: 573 LPKRLCKLQNLQTLDLYNCQSLSCLPKQTSKLCSLRNLVLDHCPLTSMPPRIGLLTCLKT 632

Query: 177 LSGFTVARVGGKYSSEACNLEGLRNLNHLRQFLRICGLGNLQMRLKIN-AHLEKKKNLVH 235
           L  F V    G    E      LRNLN LR  + I  L  ++  ++   A+L  K NL  
Sbjct: 633 LGYFVVGERKGYQLGE------LRNLN-LRGAISITHLERVKNDMEAKEANLSAKANLHS 685

Query: 236 LTLDFDKGEDEEDEDYEEAPNLMNEENEAKQEAICEALQAPPNI 279
           L++ +D+            PN      E+++  + EAL+  PN+
Sbjct: 686 LSMSWDR------------PN----RYESEEVKVLEALKPHPNL 713

Disease resistance protein. Resistance proteins guard the plant against pathogens that contain an appropriate avirulence protein via a direct or indirect interaction with this avirulence protein. That triggers a defense system which restricts the pathogen growth.

Solanum bulbocastanum (taxid: 147425)

>sp|Q7XA39|RGA4_SOLBU Putative disease resistance protein RGA4 OS=Solanum bulbocastanum GN=RGA4 PE=2 SV=1

 Score = 52.0 bits (123), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 55/187 (29%), Positives = 80/187 (42%), Gaps = 35/187 (18%)

Query: 107 EIPKGLENLIHLRYLKLSAVEELS--------------ETCYCPSLKRLPQGRGKLINLR 152
           ++P  + +L+HLRYL LS     S              +   C SL  LP+   KL +LR
Sbjct: 541 QLPSSIGDLLHLRYLDLSCNNFRSLPERLCKLQNLQTLDVHNCYSLNCLPKQTSKLSSLR 600

Query: 153 HLIFDKDYLAYMANGFERLTSLRTLSGFTVARVGGKYSSEACNLEGLRNLNHLRQFLRIC 212
           HL+ D   L         LT L+TL  F V       S +   L  L+NLN L   + I 
Sbjct: 601 HLVVDGCPLTSTPPRIGLLTCLKTLGFFIVG------SKKGYQLGELKNLN-LCGSISIT 653

Query: 213 GLGNLQMRLKINAHLEKKKNLVHLTLDFDKGEDEEDEDYEEAPNLMNEENEAKQEAICEA 272
            L  ++      A+L  K NL  L++ +D           + PN      E+K+  + EA
Sbjct: 654 HLERVKNDTDAEANLSAKANLQSLSMSWDN----------DGPN----RYESKEVKVLEA 699

Query: 273 LQAPPNI 279
           L+  PN+
Sbjct: 700 LKPHPNL 706

Disease resistance protein. Resistance proteins guard the plant against pathogens that contain an appropriate avirulence protein via a direct or indirect interaction with this avirulence protein. That triggers a defense system which restricts the pathogen growth.

Solanum bulbocastanum (taxid: 147425)

>sp|Q7XA42|RGA1_SOLBU Putative disease resistance protein RGA1 OS=Solanum bulbocastanum GN=RGA1 PE=2 SV=2

 Score = 46.6 bits (109), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 50/165 (30%), Positives = 73/165 (44%), Gaps = 24/165 (14%)

Query: 107 EIPKGLENLIHLRYLKLSA---VEELSETC------------YCPSLKRLPQGRGKLINL 151
           ++P  + +L+HLRYL LS    +  L +              YC SL  LP+   KL +L
Sbjct: 539 QLPSSIGDLVHLRYLDLSGNFRIRNLPKRLCKLQNLQTLDLHYCDSLSCLPKQTSKLGSL 598

Query: 152 RHLIFDKDYLAYMANGFERLTSLRTLSGFTVARVGGKYSSEACNLEGLRNLNHLRQFLRI 211
           R+L+ D   L         LT L++LS F + +  G    E      L+NLN L   + I
Sbjct: 599 RNLLLDGCSLTSTPPRIGLLTCLKSLSCFVIGKRKGHQLGE------LKNLN-LYGSISI 651

Query: 212 CGLGNLQMRLKIN-AHLEKKKNLVHLTLDFD-KGEDEEDEDYEEA 254
             L  ++       A+L  K NL  L L +D  G+   D +  EA
Sbjct: 652 TKLDRVKKDTDAKEANLSAKANLHSLCLSWDLDGKHRYDSEVLEA 696

Disease resistance protein. Resistance proteins guard the plant against pathogens that contain an appropriate avirulence protein via a direct or indirect interaction with this avirulence protein. That triggers a defense system which restricts the pathogen growth.

Solanum bulbocastanum (taxid: 147425)

>sp|Q7XBQ9|RGA2_SOLBU Disease resistance protein RGA2 OS=Solanum bulbocastanum GN=RGA2 PE=1 SV=1

 Score = 45.4 bits (106), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 45/141 (31%), Positives = 63/141 (44%), Gaps = 23/141 (16%)

Query: 85  FDQLTCLRALKIEELWYGDQTI-EIPKGLENLIHLRYLKL--SAVEEL-SETC------- 133
            ++   LR L +     GD T  ++P  + +L+HLRYL L  S +  L  + C       
Sbjct: 522 LEKFISLRVLNL-----GDSTFNKLPSSIGDLVHLRYLNLYGSGMRSLPKQLCKLQNLQT 576

Query: 134 ----YCPSLKRLPQGRGKLINLRHLIFD-KDYLAYMANGFERLTSLRTLSGFTVARVGGK 188
               YC  L  LP+   KL +LR+L+ D    L  M      LT L+TL  F V R  G 
Sbjct: 577 LDLQYCTKLCCLPKETSKLGSLRNLLLDGSQSLTCMPPRIGSLTCLKTLGQFVVGRKKGY 636

Query: 189 YSSEACNLE--GLRNLNHLRQ 207
              E  NL   G   ++HL +
Sbjct: 637 QLGELGNLNLYGSIKISHLER 657

Disease resistance protein. Resistance proteins guard the plant against pathogens that contain an appropriate avirulence protein via a direct or indirect interaction with this avirulence protein. That triggers a defense system which restricts the pathogen growth. Confers a broad resistance to all known races of P.infestans.

Solanum bulbocastanum (taxid: 147425)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	286
224122696	906	cc-nbs-lrr resistance protein [Populus t	0.811	0.256	0.408	4e-35
224122712	945	cc-nbs-lrr resistance protein [Populus t	0.881	0.266	0.369	7e-33
224114824	941	cc-nbs-lrr resistance protein [Populus t	0.821	0.249	0.401	8e-32
224110248	888	cc-nbs-lrr resistance protein [Populus t	0.800	0.257	0.388	1e-31
255549784	786	leucine-rich repeat containing protein,	0.839	0.305	0.382	2e-30
255558785	661	leucine-rich repeat containing protein,	0.839	0.363	0.371	1e-29
147843549	970	hypothetical protein VITISV_000507 [Viti	0.909	0.268	0.377	1e-27
224122700	799	nbs-lrr resistance protein [Populus tric	0.678	0.242	0.407	2e-27
224134406	987	cc-nbs-lrr resistance protein [Populus t	0.895	0.259	0.377	5e-27
225470202	910	PREDICTED: putative disease resistance p	0.895	0.281	0.354	5e-27

>gi|224122696|ref|XP_002318903.1| cc-nbs-lrr resistance protein [Populus trichocarpa] gi|222859576|gb|EEE97123.1| cc-nbs-lrr resistance protein [Populus trichocarpa]

 Score =  154 bits (390), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 107/262 (40%), Positives = 144/262 (54%), Gaps = 30/262 (11%)

Query: 1   MHDIVHLFAQYLTRREFAAIEVDGDENPL--SLTNSCQEKLRHLTLMLGLPTKFPVSIFD 58
           MHDIVH FAQY+T+ E   ++V    N L  +   +  E++RHL++ML   T FPVSI  
Sbjct: 450 MHDIVHDFAQYMTKNECLTVDV----NTLGGATVETSIERVRHLSMMLPNETSFPVSIHK 505

Query: 59  AKKLRSLSLFYDSKGQSAASPVLQGLFDQLTCLRALKIEELWYGDQTIEIPKGLENLIHL 118
           AK LRSL    D++  S  +  L  LF QLTC+R+L +       Q  EIP  +  LIHL
Sbjct: 506 AKGLRSL--LIDTRDPSLGA-ALPDLFKQLTCIRSLNLSR----SQIKEIPNEVGKLIHL 558

Query: 119 RYLKLSAVEELS---------------ETCYCPSLKRLPQGRGKLINLRHLIFDKDYLAY 163
           R+L L+   EL                +  +C SLK LP+  GKLI LRHL  D   +A+
Sbjct: 559 RHLNLAWCVELESLPETICDLCNLQSLDVTWCRSLKELPKAIGKLIKLRHLWIDSSGVAF 618

Query: 164 MANGFERLTSLRTLSGFTVARVGGKYSSEACNLEGLRNLNHLRQFLRICGLGNLQMRLKI 223
           +  G ER+T LRTL  FTV   GG+  S+A NL  L+NLNH+   LRI  + +++    +
Sbjct: 619 IPKGIERITCLRTLDKFTVCG-GGENESKAANLRELKNLNHIGGSLRIDKVRDIENVRDV 677

Query: 224 NAHLEKKKNLVHLTLDFDKGED 245
              L  KK L+ L  +F KG D
Sbjct: 678 VDALLNKKRLLCLEWNF-KGVD 698

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224122712|ref|XP_002318907.1| cc-nbs-lrr resistance protein [Populus trichocarpa] gi|222859580|gb|EEE97127.1| cc-nbs-lrr resistance protein [Populus trichocarpa]

 Score =  147 bits (370), Expect = 7e-33,   Method: Compositional matrix adjust.
 Identities = 110/298 (36%), Positives = 150/298 (50%), Gaps = 46/298 (15%)

Query: 1   MHDIVHLFAQYLTRREFAAIEVDGDENPL--SLTNSCQEKLRHLTLMLGLPTKFPVSIFD 58
           MHDIVH FAQY+T+ E   ++V    N L  +   +  E++RHL++M+   T FPVSI  
Sbjct: 501 MHDIVHDFAQYMTKNECLTVDV----NTLGGATVETSIERVRHLSMMVSEETSFPVSIHK 556

Query: 59  AKKLRSLSLFYDSKGQSAASPVLQGLFDQLTCLRALKIEELWYGDQTIEIPKGLENLIHL 118
           AK LRSL    D++  S  +  L  LF QLTC+R+L +          EIP  +  LIHL
Sbjct: 557 AKGLRSL--LIDTRDPSLGA-ALPDLFKQLTCIRSLNLS----ASSIKEIPNEVGKLIHL 609

Query: 119 RYLKLSAVEELS---------------ETCYCPSLKRLPQGRGKLINLRHLIFDKDYLAY 163
           R++ L+   EL                +  +C SLK LP   GKLI LRHL   +  + +
Sbjct: 610 RHVNLARCGELESLPETMCDLCNLQSLDVTWCRSLKELPNAIGKLIKLRHLRIYRSGVDF 669

Query: 164 MANGFERLTSLRTLSGFTVARVGGKYSSEACNLEGLRNLNHLRQFLRICGLGN--LQMRL 221
           +  G ER+T LRTL  F V   GG+  S+A NL  L+NLNH+   L I  LG        
Sbjct: 670 IPKGIERITCLRTLDVFKVCG-GGENESKAANLRELKNLNHIGGSLNIRNLGGGIEDASD 728

Query: 222 KINAHLEKKKNLVHLTLDFDKGEDEEDEDYEEAPNLMNEENEAKQEAICEALQAPPNI 279
              A L+ KK L  L L FD+ +                E +A + ++ EALQ P N+
Sbjct: 729 AAEAQLKNKKRLRRLELVFDREK---------------TELQANEGSLIEALQPPSNL 771

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224114824|ref|XP_002332291.1| cc-nbs-lrr resistance protein [Populus trichocarpa] gi|222832453|gb|EEE70930.1| cc-nbs-lrr resistance protein [Populus trichocarpa]

 Score =  143 bits (361), Expect = 8e-32,   Method: Compositional matrix adjust.
 Identities = 106/264 (40%), Positives = 141/264 (53%), Gaps = 29/264 (10%)

Query: 1   MHDIVHLFAQYLTRREFAAIEVDGDENPLSLTNSCQEKLRHLTLMLGLPTKFPVSIFDAK 60
           MHDIVH FAQY+T+ E   ++V+      +   +  E++RHL++ML   T FPVSI  AK
Sbjct: 497 MHDIVHDFAQYMTKNECLTVDVNNLRE--ATVETSIERVRHLSMMLSKETYFPVSIHKAK 554

Query: 61  KLRSLSLFYDSKGQSAASPVLQGLFDQLTCLRALKIEELWYGDQTIEIPKGLENLIHLRY 120
            LRSL  F D++     +  L  +F QLTC+R+L +          EIP  +  LIHLR+
Sbjct: 555 GLRSL--FIDARDPWLGA-ALPDVFKQLTCIRSLNLSM----SLIKEIPNEVGKLIHLRH 607

Query: 121 LKLS---AVEELSE------------TCYCPSLKRLPQGRGKLINLRHLIFDKDYLAYMA 165
           L L+    +E L E               C SL  LP+  GKLI LRHL      +A+M 
Sbjct: 608 LNLADCYKLESLPEIMCDLCKLQSLDVTTCRSLWELPKAIGKLIKLRHLRICGSIVAFMP 667

Query: 166 NGFERLTSLRTLSGFTVARVGGKYSSEACNLEGLRNLNHLRQFLRICGL-GNLQ-MRLKI 223
            G ER+T LRTL  F V   GG+  S+A NL  L+NLNH+   LR+  L G L+  R   
Sbjct: 668 KGIERITCLRTLDWFAVCG-GGEDESKAANLRELKNLNHIGGSLRVYNLRGGLEGARDAA 726

Query: 224 NAHLEKKKNL--VHLTLDFDKGED 245
            A L+ KK L  + L  DFD+  D
Sbjct: 727 EAQLKNKKRLRCLQLYFDFDREND 750

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224110248|ref|XP_002333128.1| cc-nbs-lrr resistance protein [Populus trichocarpa] gi|222834939|gb|EEE73388.1| cc-nbs-lrr resistance protein [Populus trichocarpa]

 Score =  142 bits (359), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 101/260 (38%), Positives = 135/260 (51%), Gaps = 31/260 (11%)

Query: 1   MHDIVHLFAQYLTRREFAAIEVDGDENPL--SLTNSCQEKLRHLTLMLGLPTKFPVSIFD 58
           MHDIVH FAQY+T+ E   ++V    N L  +   +  E++RHL++M+   T FPVSI  
Sbjct: 437 MHDIVHDFAQYMTKNECLTVDV----NTLGGATVETSIERVRHLSMMVSEETSFPVSIHK 492

Query: 59  AKKLRSLSLFYDSKGQSAASPVLQGLFDQLTCLRALKIEELWYGDQTIEIPKGLENLIHL 118
           AK LRSL    D++  S  +  L  LF QLTC+R+L +          EIP  +  LIHL
Sbjct: 493 AKGLRSL--LIDTRDPSFGA-ALPDLFKQLTCIRSLDLS----ASSIKEIPNEVGKLIHL 545

Query: 119 RYLKLSAVEELS---------------ETCYCPSLKRLPQGRGKLINLRHLIFDKDYLAY 163
           R++ L+   EL                +  +C SLK LP   GKLI LRHL   +  + +
Sbjct: 546 RHVNLARCGELESLPETMCDLCNLQSLDVTWCRSLKELPNAIGKLIKLRHLRIYRSGVDF 605

Query: 164 MANGFERLTSLRTLSGFTVARVGGKYSSEACNLEGLRNLNHLRQFLRICGLGN--LQMRL 221
           +  G ER+T LRTL  F V   GG+  S+A NL  L+NLNH+     I  LG        
Sbjct: 606 IPKGIERITCLRTLDVFKVCG-GGENESKAANLRELKNLNHIGGSFSIRNLGGGIEDASD 664

Query: 222 KINAHLEKKKNLVHLTLDFD 241
              A L+ KK L+ L L FD
Sbjct: 665 AAEAQLKNKKRLLRLELGFD 684

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255549784|ref|XP_002515943.1| leucine-rich repeat containing protein, putative [Ricinus communis] gi|223544848|gb|EEF46363.1| leucine-rich repeat containing protein, putative [Ricinus communis]

 Score =  139 bits (350), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 103/269 (38%), Positives = 144/269 (53%), Gaps = 29/269 (10%)

Query: 1   MHDIVHLFAQYLTRREFAAIEVDGDENPLSLTNSCQEKLRHLTLMLGLPTKFPVSIFDAK 60
           M++IVH FAQY+ + E  +IEV+ DE  L +  S  +++RHL +MLG    FP SI+  K
Sbjct: 301 MYNIVHDFAQYIVKNECFSIEVN-DEEELKMM-SLHKEVRHLRVMLGKDVSFPSSIYRLK 358

Query: 61  KLRSLSLFYDSKGQSAASPVLQGLFDQLTCLRALKIEELWYGDQTIEIPKGLENLIHLRY 120
            LR+L  +   KG S     L  LF +LTCLR+L +          EIP  +  LIHLR 
Sbjct: 359 DLRTL--WVQCKGNSKVGAALSNLFGRLTCLRSLNLSNC----NLAEIPSSICKLIHLRQ 412

Query: 121 LKLSA-------VEELSETCY--------CPSLKRLPQGRGKLINLRHLIFDKDYLAYMA 165
           + LS         E L E C         C SL +LP+G  KLINLRHL  +  +   + 
Sbjct: 413 IDLSYNKDLKGLPEALCELCNLQTLNMDGCFSLVKLPRGLEKLINLRHL-HNGGFEGVLP 471

Query: 166 NGFERLTSLRTLSGFTVARVGGKYSSEACNLEGLRNLNHLRQFLRICGLGNL-QMRLKIN 224
            G  +LT LR+L+ F++    G+ + EACNL  L+NLNHL+  L I GL  +  +     
Sbjct: 472 KGISKLTCLRSLNRFSI----GQNNQEACNLGDLKNLNHLQGCLCIMGLEIVADVGEAKQ 527

Query: 225 AHLEKKKNLVHLTLDFDKGEDEEDEDYEE 253
           A L KK  +  L L F KG+ E  + +++
Sbjct: 528 AELRKKTEVTRLELRFGKGDAEWRKHHDD 556

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255558785|ref|XP_002520416.1| leucine-rich repeat containing protein, putative [Ricinus communis] gi|223540401|gb|EEF41971.1| leucine-rich repeat containing protein, putative [Ricinus communis]

 Score =  135 bits (341), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 100/269 (37%), Positives = 144/269 (53%), Gaps = 29/269 (10%)

Query: 1   MHDIVHLFAQYLTRREFAAIEVDGDENPLSLTNSCQEKLRHLTLMLGLPTKFPVSIFDAK 60
           M++IVH FAQY+ + E  +IEV+ DE  L +  S  +++RHL +MLG    FP SI+  K
Sbjct: 272 MYNIVHDFAQYIVKNECFSIEVN-DEEELKMM-SLHKEVRHLRVMLGKDVSFPSSIYRLK 329

Query: 61  KLRSLSLFYDSKGQSAASPVLQGLFDQLTCLRALKIEELWYGDQTIEIPKGLENLIHLRY 120
            LR  +L+   KG S     L  LF +LTCLR+L +          EIP  +  LIHLR 
Sbjct: 330 DLR--TLWVQCKGNSKVGAALSNLFGRLTCLRSLNLSNC----NLAEIPSSISKLIHLRQ 383

Query: 121 LKLSAVEELS----ETCY-----------CPSLKRLPQGRGKLINLRHLIFDKDYLAYMA 165
           + LS  ++L       C            C SL +LP+G  KLINLRHL  +  +   + 
Sbjct: 384 IDLSYNKDLKGLPEALCELDNLQTLNMDGCFSLVKLPRGVEKLINLRHL-HNGGFEGVLP 442

Query: 166 NGFERLTSLRTLSGFTVARVGGKYSSEACNLEGLRNLNHLRQFLRICGLGNL-QMRLKIN 224
            G  +LT LR+L+ F++    G+ + EACNL  L+NLNHL+  + I GL  +  +     
Sbjct: 443 KGISKLTCLRSLNRFSI----GQDNQEACNLGDLKNLNHLQGCVCIMGLEIVADVGEAKQ 498

Query: 225 AHLEKKKNLVHLTLDFDKGEDEEDEDYEE 253
           A L KK  +  L L F KG+ E  + +++
Sbjct: 499 AELRKKTEVTRLELRFGKGDAEWRKHHDD 527

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147843549|emb|CAN79463.1| hypothetical protein VITISV_000507 [Vitis vinifera]

 Score =  129 bits (325), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 114/302 (37%), Positives = 152/302 (50%), Gaps = 42/302 (13%)

Query: 1   MHDIVHLFAQYLTRREFAAIEVDGDENPLSLTNSCQEKLRHLTLMLGLPTKFPVSIFDAK 60
           MHDIVH FAQ+LT+ E   +  +G       T +  +K+RH TL+        VS +  K
Sbjct: 527 MHDIVHSFAQFLTKNECCIMNEEGR------TKTSFQKIRHATLIGQQRHPNFVSTYKMK 580

Query: 61  KLRSLSLFYDSKGQSAASPVLQGLFDQLTCLRALKIEELWYGDQTIEIPKGLENLIHLRY 120
            LR+L L +     S+    L  LF  LTCLR L   +L       E+PK +E LIHL+Y
Sbjct: 581 NLRTLLLEFAVV--SSIDEALPNLFQHLTCLRVL---DLARNLSRKELPKAIEKLIHLKY 635

Query: 121 LKLSAVEELSE----TC-----------YCPSLKRLPQGRGKLINLRHLI-FDKDYLAYM 164
           L LS   EL E     C            C SL +LPQ  GKLINLRHL  F    L  +
Sbjct: 636 LNLSHCHELRELPEAICDLYNLQTLNIRGCDSLVQLPQAMGKLINLRHLQNFLTILLKGL 695

Query: 165 ANGFERLTSLRTLSGFTVARVGGKYSSEACNLEGLRNLNHLRQFLRICGLGNLQ-MRLKI 223
             G  RL SL+TL  FTV+  G       CN+  L NL++LR  L I GL N++  R   
Sbjct: 696 PKGISRLNSLQTLEKFTVSSDG----HNECNIGDLGNLSNLRGELEIRGLQNVENAREAR 751

Query: 224 NAHLEKKKNLVHLTLDFDKGEDEEDEDY------EEAPNLMNEENEAKQEAICEALQAPP 277
            A+L+ K ++ HLTL FD    +E  +Y        + NL+ E  +  + ++ EALQ  P
Sbjct: 752 EANLKNKIHIHHLTLVFDP---QEGTNYVVGAPRSYSTNLLPEVKKGPK-SVVEALQPHP 807

Query: 278 NI 279
           N+
Sbjct: 808 NL 809

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224122700|ref|XP_002318904.1| nbs-lrr resistance protein [Populus trichocarpa] gi|222859577|gb|EEE97124.1| nbs-lrr resistance protein [Populus trichocarpa]

 Score =  129 bits (323), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 90/221 (40%), Positives = 121/221 (54%), Gaps = 27/221 (12%)

Query: 37  EKLRHLTLMLGLPTKFPVSIFDAKKLRSLSLFYDSKGQSAASPVLQGLFDQLTCLRALKI 96
           E++RHL++ML   T FPVSI  AK LRSL    D++  S  +  L  LF QLTC+R+L +
Sbjct: 386 ERVRHLSMMLSEETSFPVSIHKAKGLRSL--LIDTRDPSLGA-ALPDLFKQLTCIRSLDL 442

Query: 97  EELWYGDQTIEIPKGLENLIHLRYLKLSAVEELS---------------ETCYCPSLKRL 141
            +        EIP  +  LIHLR+L L++  EL                +  +C SLK+L
Sbjct: 443 SK----SSIKEIPNEVGKLIHLRHLNLASCGELESLPETMCDLCNLQSLDVTWCGSLKKL 498

Query: 142 PQGRGKLINLRHLIFDKDYLAYMANGFERLTSLRTLSGFTVARVGGKYSSEACNLEGLRN 201
           P   GKLI LRHL  +   + ++  G ER+  LRTL+ F V   GG+  S+A NL  L+N
Sbjct: 499 PNAIGKLIKLRHLRINGSGVDFIPKGIERIACLRTLNVFIVCG-GGENESKAANLRELKN 557

Query: 202 LNHLRQFLRICGLGNLQ-MRLKINAHLEKKKNLVHLTLDFD 241
           LNH+   L   G+ NLQ       A L+ KK L+ L LDFD
Sbjct: 558 LNHIGGSL---GIRNLQDASDAAEAQLKNKKRLLRLELDFD 595

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224134406|ref|XP_002321815.1| cc-nbs-lrr resistance protein [Populus trichocarpa] gi|222868811|gb|EEF05942.1| cc-nbs-lrr resistance protein [Populus trichocarpa]

 Score =  127 bits (319), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 112/297 (37%), Positives = 150/297 (50%), Gaps = 41/297 (13%)

Query: 1   MHDIVHLFAQYLTRREFAAIEVDGDENPLSLTNSCQEKLRHLTLMLGLPTKFPVSIFDAK 60
           MHDIVH FAQ+L + E   +E D  +     T S  E+ RH  + +    +FP SI+ A 
Sbjct: 522 MHDIVHDFAQFLMKDECFTVETDVLKR--QKTESFYERARHAIMTVSNWARFPQSIYKAG 579

Query: 61  KLRSLSLFYDSKGQSAASPVLQGLFDQLTCLRALKIEELWYGDQTIEIPKGLENLIHLRY 120
           KLRSL     S   +A S  L  L  +LT LR   +       Q  EIP  +  L+HLRY
Sbjct: 580 KLRSL--LIRSFNDTAISKPLLELLRKLTYLRLFDLS----ASQIEEIPSDVGKLLHLRY 633

Query: 121 LKLS---AVEELSET------------CYCPSLKRLPQGRGKLINLRHLIFDKDYLAYMA 165
           L  S    ++EL ET             +C +LK+LPQ   KLI LRHL      +A++ 
Sbjct: 634 LDFSYCKWLKELPETISDLYNLQSLDLTWCVALKKLPQKMRKLIRLRHLEIFGSGVAFLP 693

Query: 166 NGFERLTSLRTLSGFTVARVGGKYSSEACNLEGLRNLNHLRQFLRICGLGNLQ-MRLKIN 224
            G E LTSLRTL+ F V+       S A NL  L NL+HLR  L I  L N++ +   + 
Sbjct: 694 RGIEELTSLRTLTNFIVSGG--GGQSGAANLGELGNLSHLRGTLWIEKLLNVRDVNEAVK 751

Query: 225 AHLEKKKNLVHLTLDFDKGEDEEDEDYEEAPNLMNEENEAKQEAICEALQAPPNIVI 281
           A ++KKK L+ L L F++  DE D        L  +EN     A+ EALQ P N+ +
Sbjct: 752 AEIKKKKYLIGLYLLFNR--DETD--------LRVDEN-----ALVEALQPPSNLQV 793

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225470202|ref|XP_002269053.1| PREDICTED: putative disease resistance protein RGA3-like [Vitis vinifera]

 Score =  127 bits (319), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 106/299 (35%), Positives = 150/299 (50%), Gaps = 43/299 (14%)

Query: 1   MHDIVHLFAQYLTRREFAAIEVDGDENPLSLTNSCQEKLRHLTLMLGLPTKFPVSIFDAK 60
           MHDIVH FAQ+LT  E   +E D  EN    TN   +K RH +LM+   TKFP S  + +
Sbjct: 495 MHDIVHDFAQFLTHNECLNLE-DDSEN--LKTNLYLQKGRHASLMVHGSTKFPFSDNNVR 551

Query: 61  KLRSLSLFYDSKGQSAASPVLQGLFDQLTCLRALKIEELWYGDQTIEIPKGLENLIHLRY 120
            LR+L + +D + +    P     F Q   LRA+   +L   D  +E+P+ +   +HLRY
Sbjct: 552 NLRTLLVVFDDRYRIDPFPPYS--FQQFKYLRAM---DLRGNDSIVELPREVGEFVHLRY 606

Query: 121 LKLS---AVEELSET------------CYCPSLKRLPQGRGKLINLRHLIFDKDYLAY-- 163
           L LS    +E L ET            C    LK+LPQG G L+NLRHL+          
Sbjct: 607 LNLSYCRRLETLPETISELWNLQTLNVCCSLRLKKLPQGMGNLVNLRHLLISGGIYGVRS 666

Query: 164 MANGFERLTSLRTLSGFTVA--RVGGKYSSEACNLEGLRNLNHLRQFLRICGLGNLQMRL 221
           +  G  RLTSLRTL  F V       + +S+ C +E +R LN LR  L I GL +++   
Sbjct: 667 LPKGVGRLTSLRTLPAFIVCDEDASDEVASDVCEIEEMRKLNELRGELEIKGLSSVEDAG 726

Query: 222 KI-NAHLEKKKNLVHLTLDFDKGEDEEDEDYEEAPNLMNEENEAKQEAICEALQAPPNI 279
           +   A L+ KK+L  LTL F        + +++   +M +E       + +ALQ  PN+
Sbjct: 727 EAEKAELKNKKHLHGLTLSF--------KPWKKQTMMMMKE-------VADALQPHPNL 770

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	286
TAIR|locus:2091672	1054	AT3G14470 [Arabidopsis thalian	0.762	0.206	0.292	9.4e-08
TAIR|locus:2091662	1424	AT3G14460 [Arabidopsis thalian	0.608	0.122	0.331	3e-07

TAIR|locus:2091672 AT3G14470 [Arabidopsis thaliana (taxid:3702)]

 Score = 152 (58.6 bits), Expect = 9.4e-08, P = 9.4e-08
 Identities = 73/250 (29%), Positives = 112/250 (44%)

Query:     1 MHDIVHLFAQYLTRREFAAIEVDGDENPLSLTNSCQEKLRHLTLM---LGLPTKFPVSIF 57
             MHD ++  AQ+ +  EF++   DG +  +S      E+ R+L+ +      P +F  ++ 
Sbjct:   492 MHDFINELAQFASG-EFSSKFEDGCKLQVS------ERTRYLSYLRDNYAEPMEFE-ALR 543

Query:    58 DAKKLRS---LSLFYDSKGQSAASPVLQGLFDQLTCLRALKIEELWYGDQTIEIPKGLEN 114
             + K LR+   LSL   S+       V + L   LT LR L +    Y    +  P   +N
Sbjct:   544 EVKFLRTFLPLSLTNSSRSCCLDQMVSEKLLPTLTRLRVLSLSH--YKIARLP-PDFFKN 600

Query:   115 LIHLRYLKLSA--VEELSET-CY-----------CPSLKRLPQGRGKLINLRHLIFDKDY 160
             + H R+L LS   +E+L ++ CY           C SLK LP     LINLR+L      
Sbjct:   601 ISHARFLDLSRTELEKLPKSLCYMYNLQTLLLSYCSSLKELPTDISNLINLRYLDLIGTK 660

Query:   161 LAYMANGFERLTSLRTLSGFTVARVGGKYSSEACNLEGLRNLNHLRQFLRICGLGNL-QM 219
             L  M   F RL SL+TL+ F V+   G   SE   L  L     + +  R+  + +  + 
Sbjct:   661 LRQMPRRFGRLKSLQTLTTFFVSASDGSRISELGGLHDLHGKLKIVELQRVVDVADAAEA 720

Query:   220 RLKINAHLEK 229
              L    HL +
Sbjct:   721 NLNSKKHLRE 730

GO:0005576 "extracellular region" evidence=ISM

GO:0006952 "defense response" evidence=IEA;ISS

GO:0043531 "ADP binding" evidence=IEA

GO:0005515 "protein binding" evidence=IPI

GO:0009627 "systemic acquired resistance" evidence=RCA

GO:0009697 "salicylic acid biosynthetic process" evidence=RCA

TAIR|locus:2091662 AT3G14460 [Arabidopsis thaliana (taxid:3702)]

 Score = 149 (57.5 bits), Expect = 3.0e-07, P = 3.0e-07
 Identities = 67/202 (33%), Positives = 93/202 (46%)

Query:    55 SIFDAKKLRSLSLFYDSKGQSA---ASPVLQGLFDQLTCLRALKIEELWYGDQTIEIPKG 111
             SI  A+ LR++  F       +      VL  L + L+ LR L +    Y  Q   +PK 
Sbjct:   536 SICGAEFLRTILPFNSPTSLESLQLTEKVLNPLLNALSGLRILSLSH--Y--QITNLPKS 591

Query:   112 LENLIHLRYLKLSA--VEELSE-TCY-----------CPSLKRLPQGRGKLINLRHLIFD 157
             L+ L  LRYL LS+  ++EL E  C            C  L  LP+   +LINLR L   
Sbjct:   592 LKGLKLLRYLDLSSTKIKELPEFVCTLCNLQTLLLSNCRDLTSLPKSIAELINLRLLDLV 651

Query:   158 KDYLAYMANGFERLTSLRTLSGFTVARVGGKYSSEACNLEGLRNLNHLRQFLRICGLGNL 217
                L  M  G ++L SL+ LS F + R+ G        L  L+ L+HLR  LRI  L N+
Sbjct:   652 GTPLVEMPPGIKKLRSLQKLSNFVIGRLSG------AGLHELKELSHLRGTLRISELQNV 705

Query:   218 QMRLKI-NAHLEKKKNLVHLTL 238
                 +  +A L++K  L  L L
Sbjct:   706 AFASEAKDAGLKRKPFLDGLIL 727


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.322   0.138   0.403    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      286       271   0.00098  114 3  11 22  0.46    33
                                                     32  0.40    37


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  2
  No. of states in DFA:  596 (63 KB)
  Total size of DFA:  187 KB (2107 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  22.46u 0.19s 22.65t   Elapsed:  00:00:01
  Total cpu time:  22.46u 0.19s 22.65t   Elapsed:  00:00:01
  Start:  Sat May 11 03:06:56 2013   End:  Sat May 11 03:06:57 2013

GO:0005634 "nucleus" evidence=ISM

GO:0006952 "defense response" evidence=IEA;ISS

GO:0043531 "ADP binding" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	286
KOG4658	889	consensus Apoptotic ATPase [Signal transduction me	99.79
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	99.63
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	99.61
KOG0444	1255	consensus Cytoskeletal regulator Flightless-I (con	99.6
PLN03210	1153	Resistant to P. syringae 6; Provisional	99.55
KOG0617	264	consensus Ras suppressor protein (contains leucine	99.53
KOG0444	1255	consensus Cytoskeletal regulator Flightless-I (con	99.45
KOG0617	264	consensus Ras suppressor protein (contains leucine	99.36
KOG0472	565	consensus Leucine-rich repeat protein [Function un	99.34
KOG0472	565	consensus Leucine-rich repeat protein [Function un	99.31
PLN03210	1153	Resistant to P. syringae 6; Provisional	99.28
KOG0618	1081	consensus Serine/threonine phosphatase 2C containi	99.16
KOG0532	722	consensus Leucine-rich repeat (LRR) protein, conta	99.05
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	99.02
KOG4194	873	consensus Membrane glycoprotein LIG-1 [Signal tran	99.01
KOG4194	873	consensus Membrane glycoprotein LIG-1 [Signal tran	98.96
KOG0618	1081	consensus Serine/threonine phosphatase 2C containi	98.96
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	98.94
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	98.88
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	98.87
KOG4658	889	consensus Apoptotic ATPase [Signal transduction me	98.83
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	98.76
KOG4237	498	consensus Extracellular matrix protein slit, conta	98.7
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	98.67
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	98.66
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	98.63
KOG0532	722	consensus Leucine-rich repeat (LRR) protein, conta	98.63
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	98.53
PLN03150	623	hypothetical protein; Provisional	98.52
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	98.46
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	98.4
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	98.31
PLN03150	623	hypothetical protein; Provisional	98.3
KOG4237	498	consensus Extracellular matrix protein slit, conta	98.29
KOG1259	490	consensus Nischarin, modulator of integrin alpha5	98.18
KOG3207	505	consensus Beta-tubulin folding cofactor E [Posttra	98.13
KOG1259	490	consensus Nischarin, modulator of integrin alpha5	98.12
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	98.1
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	98.0
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	97.92
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	97.82
PRK15386	426	type III secretion protein GogB; Provisional	97.63
KOG0531	414	consensus Protein phosphatase 1, regulatory subuni	97.55
KOG3207	505	consensus Beta-tubulin folding cofactor E [Posttra	97.54
PRK15386	426	type III secretion protein GogB; Provisional	97.31
KOG0531	414	consensus Protein phosphatase 1, regulatory subuni	97.26
KOG1909	382	consensus Ran GTPase-activating protein [RNA proce	97.22
KOG1859	1096	consensus Leucine-rich repeat proteins [General fu	97.16
KOG4579	177	consensus Leucine-rich repeat (LRR) protein associ	97.04
KOG1859	1096	consensus Leucine-rich repeat proteins [General fu	97.0
KOG1909	382	consensus Ran GTPase-activating protein [RNA proce	96.99
KOG4579	177	consensus Leucine-rich repeat (LRR) protein associ	96.95
KOG1644	233	consensus U2-associated snRNP A' protein [RNA proc	96.57
PF00560	22	LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le	96.29
PF00560	22	LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le	96.16
KOG1644	233	consensus U2-associated snRNP A' protein [RNA proc	95.86
KOG2982	418	consensus Uncharacterized conserved protein [Funct	95.85
KOG2739	260	consensus Leucine-rich acidic nuclear protein [Cel	95.36
KOG2982	418	consensus Uncharacterized conserved protein [Funct	95.31
KOG2120	419	consensus SCF ubiquitin ligase, Skp2 component [Po	95.05
KOG2120	419	consensus SCF ubiquitin ligase, Skp2 component [Po	94.59
KOG2123	388	consensus Uncharacterized conserved protein [Funct	94.56
PF13306	129	LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_	94.11
COG5238	388	RNA1 Ran GTPase-activating protein (RanGAP) involv	93.9
KOG2739	260	consensus Leucine-rich acidic nuclear protein [Cel	93.87
PF13504	17	LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OO	93.73
PF13504	17	LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OO	93.39
KOG2123	388	consensus Uncharacterized conserved protein [Funct	93.0
smart00369	26	LRR_TYP Leucine-rich repeats, typical (most popula	92.58
smart00370	26	LRR Leucine-rich repeats, outliers.	92.58
KOG0473	326	consensus Leucine-rich repeat protein [Function un	92.43
COG5238	388	RNA1 Ran GTPase-activating protein (RanGAP) involv	92.25
KOG0473	326	consensus Leucine-rich repeat protein [Function un	89.89
smart00369	26	LRR_TYP Leucine-rich repeats, typical (most popula	88.64
smart00370	26	LRR Leucine-rich repeats, outliers.	88.64
PF13306	129	LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_	85.43

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]

Probab=99.79  E-value=1.5e-19  Score=178.05  Aligned_cols=219  Identities=26%  Similarity=0.261  Sum_probs=157.7

Q ss_pred             CchHHHHHHHHhcc-----cceEEEecCCCCCCccccccccCCceEEEeecCCCCCCchhhhcCCCCcEEEeccCCCCCC
Q 039475            1 MHDIVHLFAQYLTR-----REFAAIEVDGDENPLSLTNSCQEKLRHLTLMLGLPTKFPVSIFDAKKLRSLSLFYDSKGQS   75 (286)
Q Consensus         1 mHDlv~dla~~~a~-----~e~~~~~~~~~~~~~~~~~~~~~~~r~ls~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~~   75 (286)
                      |||+|||+|+++|+     +++++......... ..-......+|+++++.+.+..++... ..++|++|.+.++.....
T Consensus       483 mHDvvRe~al~ias~~~~~~e~~iv~~~~~~~~-~~~~~~~~~~rr~s~~~~~~~~~~~~~-~~~~L~tLll~~n~~~l~  560 (889)
T KOG4658|consen  483 MHDVVREMALWIASDFGKQEENQIVSDGVGLSE-IPQVKSWNSVRRMSLMNNKIEHIAGSS-ENPKLRTLLLQRNSDWLL  560 (889)
T ss_pred             eeHHHHHHHHHHhccccccccceEEECCcCccc-cccccchhheeEEEEeccchhhccCCC-CCCccceEEEeecchhhh
Confidence            89999999999999     67655544311110 000123467899999999886666554 355899999999863111


Q ss_pred             CcCccchhhhcCCCCCcEEEeecccCCcc-CcccCccccCCCCCcEEecccccccCCCCCCCCCcccccccccccCCCEE
Q 039475           76 AASPVLQGLFDQLTCLRALKIEELWYGDQ-TIEIPKGLENLIHLRYLKLSAVEELSETCYCPSLKRLPQGRGKLINLRHL  154 (286)
Q Consensus        76 ~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~-i~~lP~~i~~L~~Lr~L~L~~~~~LP~~~~~~~l~~LP~~i~~L~~L~~L  154 (286)
                      .   +...+|..++.||||||++    |. +..+|++|++|.|||||++++          +.++.||.++++|++|.+|
T Consensus       561 ~---is~~ff~~m~~LrVLDLs~----~~~l~~LP~~I~~Li~LryL~L~~----------t~I~~LP~~l~~Lk~L~~L  623 (889)
T KOG4658|consen  561 E---ISGEFFRSLPLLRVLDLSG----NSSLSKLPSSIGELVHLRYLDLSD----------TGISHLPSGLGNLKKLIYL  623 (889)
T ss_pred             h---cCHHHHhhCcceEEEECCC----CCccCcCChHHhhhhhhhcccccC----------CCccccchHHHHHHhhhee
Confidence            1   1556789999999999998    65 889999999999999999985          8899999999999999999


Q ss_pred             EecCCCccccccc-ccccccccccccccccccCCccCCCCCCcccccCcccccceeEEcccCC-----------------
Q 039475          155 IFDKDYLAYMANG-FERLTSLRTLSGFTVARVGGKYSSEACNLEGLRNLNHLRQFLRICGLGN-----------------  216 (286)
Q Consensus       155 ~l~~~~~~~lP~~-i~~L~~L~~L~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~~L~i~~l~~-----------------  216 (286)
                      ++..+.....+++ +..|.+||+|.++.....     .....+.++.+|.+|+ .+++...+.                 
T Consensus       624 nl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~~~-----~~~~~l~el~~Le~L~-~ls~~~~s~~~~e~l~~~~~L~~~~~  697 (889)
T KOG4658|consen  624 NLEVTGRLESIPGILLELQSLRVLRLPRSALS-----NDKLLLKELENLEHLE-NLSITISSVLLLEDLLGMTRLRSLLQ  697 (889)
T ss_pred             ccccccccccccchhhhcccccEEEeeccccc-----cchhhHHhhhcccchh-hheeecchhHhHhhhhhhHHHHHHhH
Confidence            9987654433344 556999999987765422     1355666667777766 565543221                 


Q ss_pred             -----cccchhhhhhcCCCCCCceEEEEeCCCC
Q 039475          217 -----LQMRLKINAHLEKKKNLVHLTLDFDKGE  244 (286)
Q Consensus       217 -----~~~~~~~~~~l~~l~~L~~L~L~~~~~~  244 (286)
                           ..........+..+.+|++|.+......
T Consensus       698 ~l~~~~~~~~~~~~~~~~l~~L~~L~i~~~~~~  730 (889)
T KOG4658|consen  698 SLSIEGCSKRTLISSLGSLGNLEELSILDCGIS  730 (889)
T ss_pred             hhhhcccccceeecccccccCcceEEEEcCCCc
Confidence                 0013344567788999999999877664

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=99.63  E-value=7.9e-16  Score=156.09  Aligned_cols=192  Identities=18%  Similarity=0.240  Sum_probs=105.4

Q ss_pred             CCceEEEeecCCC-CCCchhhhcCCCCcEEEeccCCCCCCCcCccch-hhhcCCCCCcEEEeecccCC------------
Q 039475           37 EKLRHLTLMLGLP-TKFPVSIFDAKKLRSLSLFYDSKGQSAASPVLQ-GLFDQLTCLRALKIEELWYG------------  102 (286)
Q Consensus        37 ~~~r~ls~~~~~~-~~~~~~~~~l~~Lr~L~l~~~~~~~~~~~~~~~-~~~~~l~~Lr~L~L~~~~~~------------  102 (286)
                      .+++.+.+..+.+ ..++..+..+++|++|++++|.....     +| ..+..+++||+|+|+++...            
T Consensus        69 ~~v~~L~L~~~~i~~~~~~~~~~l~~L~~L~Ls~n~~~~~-----ip~~~~~~l~~L~~L~Ls~n~l~~~~p~~~l~~L~  143 (968)
T PLN00113         69 SRVVSIDLSGKNISGKISSAIFRLPYIQTINLSNNQLSGP-----IPDDIFTTSSSLRYLNLSNNNFTGSIPRGSIPNLE  143 (968)
T ss_pred             CcEEEEEecCCCccccCChHHhCCCCCCEEECCCCccCCc-----CChHHhccCCCCCEEECcCCccccccCccccCCCC
Confidence            4577777776654 34566677788888888877765432     33 33445555666655551000            


Q ss_pred             ------ccCc-ccCccccCCCCCcEEeccc---ccccCCC-CCCCC-----------CcccccccccccCCCEEEecCCC
Q 039475          103 ------DQTI-EIPKGLENLIHLRYLKLSA---VEELSET-CYCPS-----------LKRLPQGRGKLINLRHLIFDKDY  160 (286)
Q Consensus       103 ------~~i~-~lP~~i~~L~~Lr~L~L~~---~~~LP~~-~~~~~-----------l~~LP~~i~~L~~L~~L~l~~~~  160 (286)
                            |.+. .+|..++++.+|++|++++   ...+|.. +.+.+           ...+|..++++++|++|++++|.
T Consensus       144 ~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~  223 (968)
T PLN00113        144 TLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNN  223 (968)
T ss_pred             EEECcCCcccccCChHHhcCCCCCEEECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCc
Confidence                  3332 4566677777777777765   2345544 32221           12346666666666666666666


Q ss_pred             cc-cccccccccccccccccccccccCCccCCCCCCcccccCcccccceeEEcccCCcccchhhhhhcCCCCCCceEEEE
Q 039475          161 LA-YMANGFERLTSLRTLSGFTVARVGGKYSSEACNLEGLRNLNHLRQFLRICGLGNLQMRLKINAHLEKKKNLVHLTLD  239 (286)
Q Consensus       161 ~~-~lP~~i~~L~~L~~L~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~~L~i~~l~~~~~~~~~~~~l~~l~~L~~L~L~  239 (286)
                      +. .+|..++++++|++|++..+...       +.....++++++|+ .|.+.+..-   .+..+..+..+++|++|+++
T Consensus       224 l~~~~p~~l~~l~~L~~L~L~~n~l~-------~~~p~~l~~l~~L~-~L~L~~n~l---~~~~p~~l~~l~~L~~L~Ls  292 (968)
T PLN00113        224 LSGEIPYEIGGLTSLNHLDLVYNNLT-------GPIPSSLGNLKNLQ-YLFLYQNKL---SGPIPPSIFSLQKLISLDLS  292 (968)
T ss_pred             cCCcCChhHhcCCCCCEEECcCceec-------cccChhHhCCCCCC-EEECcCCee---eccCchhHhhccCcCEEECc
Confidence            55 45666666666666666555432       23333455555555 555542211   22334445555566666665


Q ss_pred             eCCCC
Q 039475          240 FDKGE  244 (286)
Q Consensus       240 ~~~~~  244 (286)
                      +|...
T Consensus       293 ~n~l~  297 (968)
T PLN00113        293 DNSLS  297 (968)
T ss_pred             CCeec
Confidence            55443

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=99.61  E-value=1.8e-15  Score=153.58  Aligned_cols=187  Identities=21%  Similarity=0.229  Sum_probs=114.0

Q ss_pred             cCCceEEEeecCCCC-CCchhhhcCCCCcEEEeccCCCCCCCcCccchhhhcCCCCCcEEEeecccCCccCc-ccCcccc
Q 039475           36 QEKLRHLTLMLGLPT-KFPVSIFDAKKLRSLSLFYDSKGQSAASPVLQGLFDQLTCLRALKIEELWYGDQTI-EIPKGLE  113 (286)
Q Consensus        36 ~~~~r~ls~~~~~~~-~~~~~~~~l~~Lr~L~l~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~i~-~lP~~i~  113 (286)
                      ..+.|++.+..+... .+|.  ..+++|++|++++|.....     +|..++++++|++|++++    |.+. .+|..++
T Consensus       117 l~~L~~L~Ls~n~l~~~~p~--~~l~~L~~L~Ls~n~~~~~-----~p~~~~~l~~L~~L~L~~----n~l~~~~p~~~~  185 (968)
T PLN00113        117 SSSLRYLNLSNNNFTGSIPR--GSIPNLETLDLSNNMLSGE-----IPNDIGSFSSLKVLDLGG----NVLVGKIPNSLT  185 (968)
T ss_pred             CCCCCEEECcCCccccccCc--cccCCCCEEECcCCccccc-----CChHHhcCCCCCEEECcc----CcccccCChhhh
Confidence            356777777766652 2332  3467777777777765432     566667777777777777    6643 5677777


Q ss_pred             CCCCCcEEeccc---ccccCCC-CCCCC----------C-cccccccccccCCCEEEecCCCcc-ccccccccccccccc
Q 039475          114 NLIHLRYLKLSA---VEELSET-CYCPS----------L-KRLPQGRGKLINLRHLIFDKDYLA-YMANGFERLTSLRTL  177 (286)
Q Consensus       114 ~L~~Lr~L~L~~---~~~LP~~-~~~~~----------l-~~LP~~i~~L~~L~~L~l~~~~~~-~lP~~i~~L~~L~~L  177 (286)
                      ++++|++|++++   ...+|.. +.+.+          + ..+|..++++++|++|++.+|.+. .+|..++++++|++|
T Consensus       186 ~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L  265 (968)
T PLN00113        186 NLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYL  265 (968)
T ss_pred             hCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCccCCcCChhHhcCCCCCEEECcCceeccccChhHhCCCCCCEE
Confidence            777777777766   3355655 42222          2 256777888888888888887776 567778888888888


Q ss_pred             ccccccccCCccCCCCCCcccccCcccccceeEEcccCCcccchhhhhhcCCCCCCceEEEEeCCCC
Q 039475          178 SGFTVARVGGKYSSEACNLEGLRNLNHLRQFLRICGLGNLQMRLKINAHLEKKKNLVHLTLDFDKGE  244 (286)
Q Consensus       178 ~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~~L~i~~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~  244 (286)
                      .+..+...       +.....+.++++|+ .|.+.+..   -....+..+.++++|+.|+++.|...
T Consensus       266 ~L~~n~l~-------~~~p~~l~~l~~L~-~L~Ls~n~---l~~~~p~~~~~l~~L~~L~l~~n~~~  321 (968)
T PLN00113        266 FLYQNKLS-------GPIPPSIFSLQKLI-SLDLSDNS---LSGEIPELVIQLQNLEILHLFSNNFT  321 (968)
T ss_pred             ECcCCeee-------ccCchhHhhccCcC-EEECcCCe---eccCCChhHcCCCCCcEEECCCCccC
Confidence            77666543       23334455555555 55554321   12233444555555666665555443

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]

Probab=99.60  E-value=3.3e-17  Score=150.93  Aligned_cols=179  Identities=23%  Similarity=0.241  Sum_probs=126.8

Q ss_pred             CCceEEEeecCCCCCCchhhhcCCCCcEEEeccCCCCCCCcCccchhhhcCCCCCcEEEeecccCCccCcccCccccCCC
Q 039475           37 EKLRHLTLMLGLPTKFPVSIFDAKKLRSLSLFYDSKGQSAASPVLQGLFDQLTCLRALKIEELWYGDQTIEIPKGLENLI  116 (286)
Q Consensus        37 ~~~r~ls~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~i~~lP~~i~~L~  116 (286)
                      .+..|+++..|....+...+..++.||++++..|......    +|..+-.+..|.+|||+.    |++.++|..+..-+
T Consensus        55 qkLEHLs~~HN~L~~vhGELs~Lp~LRsv~~R~N~LKnsG----iP~diF~l~dLt~lDLSh----NqL~EvP~~LE~AK  126 (1255)
T KOG0444|consen   55 QKLEHLSMAHNQLISVHGELSDLPRLRSVIVRDNNLKNSG----IPTDIFRLKDLTILDLSH----NQLREVPTNLEYAK  126 (1255)
T ss_pred             hhhhhhhhhhhhhHhhhhhhccchhhHHHhhhccccccCC----CCchhcccccceeeecch----hhhhhcchhhhhhc
Confidence            4567777777777667777888899999999888764333    565566899999999999    99999999999999


Q ss_pred             CCcEEecccccccCCCCCCCCCccccccc-ccccCCCEEEecCCCcccccccccccccccccccccccccCCccCCCCCC
Q 039475          117 HLRYLKLSAVEELSETCYCPSLKRLPQGR-GKLINLRHLIFDKDYLAYMANGFERLTSLRTLSGFTVARVGGKYSSEACN  195 (286)
Q Consensus       117 ~Lr~L~L~~~~~LP~~~~~~~l~~LP~~i-~~L~~L~~L~l~~~~~~~lP~~i~~L~~L~~L~~~~~~~~~~~~~~~~~~  195 (286)
                      ++-.|+|++          +++..+|..+ -+|+.|-.||++.|.+..+|+.+..|.+||+|.++.+...       ...
T Consensus       127 n~iVLNLS~----------N~IetIPn~lfinLtDLLfLDLS~NrLe~LPPQ~RRL~~LqtL~Ls~NPL~-------hfQ  189 (1255)
T KOG0444|consen  127 NSIVLNLSY----------NNIETIPNSLFINLTDLLFLDLSNNRLEMLPPQIRRLSMLQTLKLSNNPLN-------HFQ  189 (1255)
T ss_pred             CcEEEEccc----------CccccCCchHHHhhHhHhhhccccchhhhcCHHHHHHhhhhhhhcCCChhh-------HHH
Confidence            999999997          6677777554 6777777777777777777777777777777777666443       334


Q ss_pred             cccccCcccccceeEEcccCCccc-chhhhhhcCCCCCCceEEEEeCCCC
Q 039475          196 LEGLRNLNHLRQFLRICGLGNLQM-RLKINAHLEKKKNLVHLTLDFDKGE  244 (286)
Q Consensus       196 ~~~l~~L~~L~~~L~i~~l~~~~~-~~~~~~~l~~l~~L~~L~L~~~~~~  244 (286)
                      +..+..|+.|. .|++.   +... ...+|.++..+.+|..+++++|...
T Consensus       190 LrQLPsmtsL~-vLhms---~TqRTl~N~Ptsld~l~NL~dvDlS~N~Lp  235 (1255)
T KOG0444|consen  190 LRQLPSMTSLS-VLHMS---NTQRTLDNIPTSLDDLHNLRDVDLSENNLP  235 (1255)
T ss_pred             HhcCccchhhh-hhhcc---cccchhhcCCCchhhhhhhhhccccccCCC
Confidence            44444444443 34333   3333 4455556666666666666666554

>PLN03210 Resistant to P

Probab=99.55  E-value=3.4e-14  Score=145.92  Aligned_cols=176  Identities=19%  Similarity=0.241  Sum_probs=110.2

Q ss_pred             CchHHHHHHHHhcccce-------EEEecCCCCCCccccccccCCceEEEeecCCCCC---CchhhhcCCCCcEEEeccC
Q 039475            1 MHDIVHLFAQYLTRREF-------AAIEVDGDENPLSLTNSCQEKLRHLTLMLGLPTK---FPVSIFDAKKLRSLSLFYD   70 (286)
Q Consensus         1 mHDlv~dla~~~a~~e~-------~~~~~~~~~~~~~~~~~~~~~~r~ls~~~~~~~~---~~~~~~~l~~Lr~L~l~~~   70 (286)
                      |||++||+|+++++++.       +.+...+..... ....-..+++.+++.......   .+..|..+++|+.|.+..+
T Consensus       490 MHdLl~~~~r~i~~~~~~~~~~r~~l~~~~di~~vl-~~~~g~~~v~~i~l~~~~~~~~~i~~~aF~~m~~L~~L~~~~~  568 (1153)
T PLN03210        490 MHSLLQEMGKEIVRAQSNEPGEREFLVDAKDICDVL-EDNTGTKKVLGITLDIDEIDELHIHENAFKGMRNLLFLKFYTK  568 (1153)
T ss_pred             hhhHHHHHHHHHHHhhcCCCCcceeEeCHHHHHHHH-HhCcccceeeEEEeccCccceeeecHHHHhcCccccEEEEecc
Confidence            99999999999998764       221110000000 000012345666554433321   1334556666666666443


Q ss_pred             CCCC----CCc---------------------CccchhhhcCCCCCcEEEeecccCCccCcccCccccCCCCCcEEeccc
Q 039475           71 SKGQ----SAA---------------------SPVLQGLFDQLTCLRALKIEELWYGDQTIEIPKGLENLIHLRYLKLSA  125 (286)
Q Consensus        71 ~~~~----~~~---------------------~~~~~~~~~~l~~Lr~L~L~~~~~~~~i~~lP~~i~~L~~Lr~L~L~~  125 (286)
                      ....    ...                     -..+|..| .+.+|++|++.+    +.+..+|..++.+.+|++|+|++
T Consensus       569 ~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~~l~~lP~~f-~~~~L~~L~L~~----s~l~~L~~~~~~l~~Lk~L~Ls~  643 (1153)
T PLN03210        569 KWDQKKEVRWHLPEGFDYLPPKLRLLRWDKYPLRCMPSNF-RPENLVKLQMQG----SKLEKLWDGVHSLTGLRNIDLRG  643 (1153)
T ss_pred             cccccccceeecCcchhhcCcccEEEEecCCCCCCCCCcC-CccCCcEEECcC----ccccccccccccCCCCCEEECCC
Confidence            2100    000                     00134333 456777788877    77888888888899999999986


Q ss_pred             ---ccccCCC-C----------CCCCCcccccccccccCCCEEEecCC-Cccccccccccccccccccccccc
Q 039475          126 ---VEELSET-C----------YCPSLKRLPQGRGKLINLRHLIFDKD-YLAYMANGFERLTSLRTLSGFTVA  183 (286)
Q Consensus       126 ---~~~LP~~-~----------~~~~l~~LP~~i~~L~~L~~L~l~~~-~~~~lP~~i~~L~~L~~L~~~~~~  183 (286)
                         ++.+|.. .          +|..+.++|.++++|++|++|++.++ .+..+|.++ ++++|++|.+.++.
T Consensus       644 ~~~l~~ip~ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i-~l~sL~~L~Lsgc~  715 (1153)
T PLN03210        644 SKNLKEIPDLSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTGI-NLKSLYRLNLSGCS  715 (1153)
T ss_pred             CCCcCcCCccccCCcccEEEecCCCCccccchhhhccCCCCEEeCCCCCCcCccCCcC-CCCCCCEEeCCCCC
Confidence               6677754 2          67888899999999999999999874 566888766 78888888776653

syringae 6; Provisional

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]

Probab=99.53  E-value=9.1e-16  Score=120.95  Aligned_cols=137  Identities=26%  Similarity=0.287  Sum_probs=114.2

Q ss_pred             CCceEEEeecCCCCCCchhhhcCCCCcEEEeccCCCCCCCcCccchhhhcCCCCCcEEEeecccCCccCcccCccccCCC
Q 039475           37 EKLRHLTLMLGLPTKFPVSIFDAKKLRSLSLFYDSKGQSAASPVLQGLFDQLTCLRALKIEELWYGDQTIEIPKGLENLI  116 (286)
Q Consensus        37 ~~~r~ls~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~i~~lP~~i~~L~  116 (286)
                      ..+.++.+..+....+|+.+..+.+|++|.+++|....      +|..++.++.||.|+++-    +.+..+|..+|.++
T Consensus        33 s~ITrLtLSHNKl~~vppnia~l~nlevln~~nnqie~------lp~~issl~klr~lnvgm----nrl~~lprgfgs~p  102 (264)
T KOG0617|consen   33 SNITRLTLSHNKLTVVPPNIAELKNLEVLNLSNNQIEE------LPTSISSLPKLRILNVGM----NRLNILPRGFGSFP  102 (264)
T ss_pred             hhhhhhhcccCceeecCCcHHHhhhhhhhhcccchhhh------cChhhhhchhhhheecch----hhhhcCccccCCCc
Confidence            55788889999998899999999999999999998654      788889999999999999    99999999999999


Q ss_pred             CCcEEeccc----ccccCCC-C----------CCCCCcccccccccccCCCEEEecCCCccccccccccccccccccccc
Q 039475          117 HLRYLKLSA----VEELSET-C----------YCPSLKRLPQGRGKLINLRHLIFDKDYLAYMANGFERLTSLRTLSGFT  181 (286)
Q Consensus       117 ~Lr~L~L~~----~~~LP~~-~----------~~~~l~~LP~~i~~L~~L~~L~l~~~~~~~lP~~i~~L~~L~~L~~~~  181 (286)
                      -|+.|||.+    -..||.. +          +-+.++-+|.++++|++||.|.+++|.+.++|.++|.|+.|++|++.+
T Consensus       103 ~levldltynnl~e~~lpgnff~m~tlralyl~dndfe~lp~dvg~lt~lqil~lrdndll~lpkeig~lt~lrelhiqg  182 (264)
T KOG0617|consen  103 ALEVLDLTYNNLNENSLPGNFFYMTTLRALYLGDNDFEILPPDVGKLTNLQILSLRDNDLLSLPKEIGDLTRLRELHIQG  182 (264)
T ss_pred             hhhhhhccccccccccCCcchhHHHHHHHHHhcCCCcccCChhhhhhcceeEEeeccCchhhCcHHHHHHHHHHHHhccc
Confidence            999999998    4467766 5          334566777788888888888887777777887788888888777665


Q ss_pred             cc
Q 039475          182 VA  183 (286)
Q Consensus       182 ~~  183 (286)
                      +.
T Consensus       183 nr  184 (264)
T KOG0617|consen  183 NR  184 (264)
T ss_pred             ce
Confidence            53

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]

Probab=99.45  E-value=4.4e-15  Score=137.11  Aligned_cols=135  Identities=25%  Similarity=0.296  Sum_probs=94.3

Q ss_pred             CceEEEeecCCCCCCchhhhcCCCCcEEEeccCCCCCCCcCccchhhhcCCCCCcEEEeecccCCccCcccCccccCCCC
Q 039475           38 KLRHLTLMLGLPTKFPVSIFDAKKLRSLSLFYDSKGQSAASPVLQGLFDQLTCLRALKIEELWYGDQTIEIPKGLENLIH  117 (286)
Q Consensus        38 ~~r~ls~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~i~~lP~~i~~L~~  117 (286)
                      ...-+.++.|...+.|..+...+++-+|.+++|.....     ....|-+++.|-+|||++    |.+..+|+.+-.|.+
T Consensus       104 dLt~lDLShNqL~EvP~~LE~AKn~iVLNLS~N~IetI-----Pn~lfinLtDLLfLDLS~----NrLe~LPPQ~RRL~~  174 (1255)
T KOG0444|consen  104 DLTILDLSHNQLREVPTNLEYAKNSIVLNLSYNNIETI-----PNSLFINLTDLLFLDLSN----NRLEMLPPQIRRLSM  174 (1255)
T ss_pred             cceeeecchhhhhhcchhhhhhcCcEEEEcccCccccC-----CchHHHhhHhHhhhcccc----chhhhcCHHHHHHhh
Confidence            34556677777788899998999999999999886542     445688999999999999    999999999999999


Q ss_pred             CcEEeccc-------ccccCCC-C--------CCCCCcccccccccccCCCEEEecCCCccccccccccccccccccccc
Q 039475          118 LRYLKLSA-------VEELSET-C--------YCPSLKRLPQGRGKLINLRHLIFDKDYLAYMANGFERLTSLRTLSGFT  181 (286)
Q Consensus       118 Lr~L~L~~-------~~~LP~~-~--------~~~~l~~LP~~i~~L~~L~~L~l~~~~~~~lP~~i~~L~~L~~L~~~~  181 (286)
                      |++|.|++       +.+||.. .        ....+..+|.++..|.+|+.+|++.|++..+|..+.++.+|+.|.++.
T Consensus       175 LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N~Lp~vPecly~l~~LrrLNLS~  254 (1255)
T KOG0444|consen  175 LQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSENNLPIVPECLYKLRNLRRLNLSG  254 (1255)
T ss_pred             hhhhhcCCChhhHHHHhcCccchhhhhhhcccccchhhcCCCchhhhhhhhhccccccCCCcchHHHhhhhhhheeccCc
Confidence            99999998       6788875 3        111223345555555555555555544444444444444444444443

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]

Probab=99.36  E-value=1.8e-14  Score=113.67  Aligned_cols=156  Identities=21%  Similarity=0.264  Sum_probs=100.7

Q ss_pred             hhcCCCCcEEEeccCCCCCCCcCccchhhhcCCCCCcEEEeecccCCccCcccCccccCCCCCcEEecccccccCCCCCC
Q 039475           56 IFDAKKLRSLSLFYDSKGQSAASPVLQGLFDQLTCLRALKIEELWYGDQTIEIPKGLENLIHLRYLKLSAVEELSETCYC  135 (286)
Q Consensus        56 ~~~l~~Lr~L~l~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~i~~lP~~i~~L~~Lr~L~L~~~~~LP~~~~~  135 (286)
                      +.++++...|.++.|....      .|..+..+.+|.+|++.+    ++++++|.+|+.|..||.|++.-          
T Consensus        29 Lf~~s~ITrLtLSHNKl~~------vppnia~l~nlevln~~n----nqie~lp~~issl~klr~lnvgm----------   88 (264)
T KOG0617|consen   29 LFNMSNITRLTLSHNKLTV------VPPNIAELKNLEVLNLSN----NQIEELPTSISSLPKLRILNVGM----------   88 (264)
T ss_pred             ccchhhhhhhhcccCceee------cCCcHHHhhhhhhhhccc----chhhhcChhhhhchhhhheecch----------
Confidence            3467788888898887654      666789999999999999    99999999999999999999974          


Q ss_pred             CCCcccccccccccCCCEEEecCCCcc--cccccccccccccccccccccccCCccCCCCCCcccccCcccccceeEEcc
Q 039475          136 PSLKRLPQGRGKLINLRHLIFDKDYLA--YMANGFERLTSLRTLSGFTVARVGGKYSSEACNLEGLRNLNHLRQFLRICG  213 (286)
Q Consensus       136 ~~l~~LP~~i~~L~~L~~L~l~~~~~~--~lP~~i~~L~~L~~L~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~~L~i~~  213 (286)
                      +++..+|.+||.++.|+.||+.+|++.  .+|..|--|+.|+.|++.+++.        .....++++|++|+ -|.+.+
T Consensus        89 nrl~~lprgfgs~p~levldltynnl~e~~lpgnff~m~tlralyl~dndf--------e~lp~dvg~lt~lq-il~lrd  159 (264)
T KOG0617|consen   89 NRLNILPRGFGSFPALEVLDLTYNNLNENSLPGNFFYMTTLRALYLGDNDF--------EILPPDVGKLTNLQ-ILSLRD  159 (264)
T ss_pred             hhhhcCccccCCCchhhhhhccccccccccCCcchhHHHHHHHHHhcCCCc--------ccCChhhhhhccee-EEeecc
Confidence            556666666666666666666655444  3454455555555555444432        22334455555444 344432


Q ss_pred             cCCcccchhhhhhcCCCCCCceEEEEeCCCC
Q 039475          214 LGNLQMRLKINAHLEKKKNLVHLTLDFDKGE  244 (286)
Q Consensus       214 l~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~  244 (286)
                      .+    .-.++..++.++.|+.|++..|+.+
T Consensus       160 nd----ll~lpkeig~lt~lrelhiqgnrl~  186 (264)
T KOG0617|consen  160 ND----LLSLPKEIGDLTRLRELHIQGNRLT  186 (264)
T ss_pred             Cc----hhhCcHHHHHHHHHHHHhcccceee
Confidence            11    2233444555555566665555543

>KOG0472 consensus Leucine-rich repeat protein [Function unknown]

Probab=99.34  E-value=1.1e-13  Score=121.91  Aligned_cols=198  Identities=21%  Similarity=0.201  Sum_probs=127.8

Q ss_pred             CceEEEeecCCCCCCchhhhcCCCCcEEEeccCCCCCCCc----------------Cccchh-hhcCCCCCcEEEeeccc
Q 039475           38 KLRHLTLMLGLPTKFPVSIFDAKKLRSLSLFYDSKGQSAA----------------SPVLQG-LFDQLTCLRALKIEELW  100 (286)
Q Consensus        38 ~~r~ls~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~~~~----------------~~~~~~-~~~~l~~Lr~L~L~~~~  100 (286)
                      ...|+....+..+.+|+.++.+.+|.-|++..|.......                .+.+|. ..+++.++.+|||+.  
T Consensus       184 ~L~~ld~~~N~L~tlP~~lg~l~~L~~LyL~~Nki~~lPef~gcs~L~Elh~g~N~i~~lpae~~~~L~~l~vLDLRd--  261 (565)
T KOG0472|consen  184 RLKHLDCNSNLLETLPPELGGLESLELLYLRRNKIRFLPEFPGCSLLKELHVGENQIEMLPAEHLKHLNSLLVLDLRD--  261 (565)
T ss_pred             HHHhcccchhhhhcCChhhcchhhhHHHHhhhcccccCCCCCccHHHHHHHhcccHHHhhHHHHhcccccceeeeccc--
Confidence            3455555555555566666666665555555543211000                011332 344788888888888  


Q ss_pred             CCccCcccCccccCCCCCcEEeccc--ccccCCC-C--------------------------------------------
Q 039475          101 YGDQTIEIPKGLENLIHLRYLKLSA--VEELSET-C--------------------------------------------  133 (286)
Q Consensus       101 ~~~~i~~lP~~i~~L~~Lr~L~L~~--~~~LP~~-~--------------------------------------------  133 (286)
                        +.++++|++++.|++|.+||+++  ++.+|-+ +                                            
T Consensus       262 --Nklke~Pde~clLrsL~rLDlSNN~is~Lp~sLgnlhL~~L~leGNPlrTiRr~ii~~gT~~vLKyLrs~~~~dglS~  339 (565)
T KOG0472|consen  262 --NKLKEVPDEICLLRSLERLDLSNNDISSLPYSLGNLHLKFLALEGNPLRTIRREIISKGTQEVLKYLRSKIKDDGLSQ  339 (565)
T ss_pred             --cccccCchHHHHhhhhhhhcccCCccccCCcccccceeeehhhcCCchHHHHHHHHcccHHHHHHHHHHhhccCCCCC
Confidence              88888888888888888888888  8888877 6                                            


Q ss_pred             --------------------------------------------------------------------------------
Q 039475          134 --------------------------------------------------------------------------------  133 (286)
Q Consensus       134 --------------------------------------------------------------------------------  133 (286)
                                                                                                      
T Consensus       340 se~~~e~~~t~~~~~~~~~~~~i~tkiL~~s~~qlt~VPdEVfea~~~~~Vt~VnfskNqL~elPk~L~~lkelvT~l~l  419 (565)
T KOG0472|consen  340 SEGGTETAMTLPSESFPDIYAIITTKILDVSDKQLTLVPDEVFEAAKSEIVTSVNFSKNQLCELPKRLVELKELVTDLVL  419 (565)
T ss_pred             CcccccccCCCCCCcccchhhhhhhhhhcccccccccCCHHHHHHhhhcceEEEecccchHhhhhhhhHHHHHHHHHHHh
Confidence                                                                                            


Q ss_pred             CCCCCcccccccccccCCCEEEecCCCcccccccccccccccccccccccccCCc----------------cCCCCCCcc
Q 039475          134 YCPSLKRLPQGRGKLINLRHLIFDKDYLAYMANGFERLTSLRTLSGFTVARVGGK----------------YSSEACNLE  197 (286)
Q Consensus       134 ~~~~l~~LP~~i~~L~~L~~L~l~~~~~~~lP~~i~~L~~L~~L~~~~~~~~~~~----------------~~~~~~~~~  197 (286)
                      ..+.+.-.|..++.+++|..|++++|.+-.+|.+++.+..||+|++..+....-.                .........
T Consensus       420 snn~isfv~~~l~~l~kLt~L~L~NN~Ln~LP~e~~~lv~Lq~LnlS~NrFr~lP~~~y~lq~lEtllas~nqi~~vd~~  499 (565)
T KOG0472|consen  420 SNNKISFVPLELSQLQKLTFLDLSNNLLNDLPEEMGSLVRLQTLNLSFNRFRMLPECLYELQTLETLLASNNQIGSVDPS  499 (565)
T ss_pred             hcCccccchHHHHhhhcceeeecccchhhhcchhhhhhhhhheecccccccccchHHHhhHHHHHHHHhccccccccChH
Confidence            1111222355677888889999988888889988998888998877654211000                000011222


Q ss_pred             cccCcccccceeEEcccCCcccchhhhhhcCCCCCCceEEEEeCCCC
Q 039475          198 GLRNLNHLRQFLRICGLGNLQMRLKINAHLEKKKNLVHLTLDFDKGE  244 (286)
Q Consensus       198 ~l~~L~~L~~~L~i~~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~  244 (286)
                      .+++|.+|. .|.+.+.    +...+|..+++|++|++|.++.|...
T Consensus       500 ~l~nm~nL~-tLDL~nN----dlq~IPp~LgnmtnL~hLeL~gNpfr  541 (565)
T KOG0472|consen  500 GLKNMRNLT-TLDLQNN----DLQQIPPILGNMTNLRHLELDGNPFR  541 (565)
T ss_pred             Hhhhhhhcc-eeccCCC----chhhCChhhccccceeEEEecCCccC
Confidence            355666555 5555421    25778899999999999999999886

>KOG0472 consensus Leucine-rich repeat protein [Function unknown]

Probab=99.31  E-value=4.8e-14  Score=124.21  Aligned_cols=178  Identities=20%  Similarity=0.212  Sum_probs=103.1

Q ss_pred             EeecCCCCCCchhhhcCCCCcEEEeccCCCCCCCcCccchhhhcCCCCCcEEEeecccCCccCcccCccccCCCCCcEEe
Q 039475           43 TLMLGLPTKFPVSIFDAKKLRSLSLFYDSKGQSAASPVLQGLFDQLTCLRALKIEELWYGDQTIEIPKGLENLIHLRYLK  122 (286)
Q Consensus        43 s~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~i~~lP~~i~~L~~Lr~L~  122 (286)
                      .++.+.....|++++.+..+..+.++.+....      +|..+..+..|+.|+.+.    +.+.++|++|+.+..|..|+
T Consensus        74 ~~~~n~l~~lp~aig~l~~l~~l~vs~n~ls~------lp~~i~s~~~l~~l~~s~----n~~~el~~~i~~~~~l~dl~  143 (565)
T KOG0472|consen   74 NVHDNKLSQLPAAIGELEALKSLNVSHNKLSE------LPEQIGSLISLVKLDCSS----NELKELPDSIGRLLDLEDLD  143 (565)
T ss_pred             EeccchhhhCCHHHHHHHHHHHhhcccchHhh------ccHHHhhhhhhhhhhccc----cceeecCchHHHHhhhhhhh
Confidence            34444444455555555555555555554332      455555555566666665    55666666666666666555


Q ss_pred             ccc--ccccCCC-C----------CCCCCcccccccccccCCCEEEecCCCcccccccccccccccccccccccccCCcc
Q 039475          123 LSA--VEELSET-C----------YCPSLKRLPQGRGKLINLRHLIFDKDYLAYMANGFERLTSLRTLSGFTVARVGGKY  189 (286)
Q Consensus       123 L~~--~~~LP~~-~----------~~~~l~~LP~~i~~L~~L~~L~l~~~~~~~lP~~i~~L~~L~~L~~~~~~~~~~~~  189 (286)
                      ..+  +..+|++ +          ..++++++|+..-+|+.|++|+...|-+..+|+++|.|.+|..|++..+...    
T Consensus       144 ~~~N~i~slp~~~~~~~~l~~l~~~~n~l~~l~~~~i~m~~L~~ld~~~N~L~tlP~~lg~l~~L~~LyL~~Nki~----  219 (565)
T KOG0472|consen  144 ATNNQISSLPEDMVNLSKLSKLDLEGNKLKALPENHIAMKRLKHLDCNSNLLETLPPELGGLESLELLYLRRNKIR----  219 (565)
T ss_pred             ccccccccCchHHHHHHHHHHhhccccchhhCCHHHHHHHHHHhcccchhhhhcCChhhcchhhhHHHHhhhcccc----
Confidence            555  5666665 4          2244566777766688888888888877788888888888887777666433    


Q ss_pred             CCCCCCcccccCcccccceeEEcccCCcccchhhhhhc-CCCCCCceEEEEeCCCC
Q 039475          190 SSEACNLEGLRNLNHLRQFLRICGLGNLQMRLKINAHL-EKKKNLVHLTLDFDKGE  244 (286)
Q Consensus       190 ~~~~~~~~~l~~L~~L~~~L~i~~l~~~~~~~~~~~~l-~~l~~L~~L~L~~~~~~  244 (286)
                           .+.+++....|+ .+++...    ..+.+++.. .++.++..|+++.|+..
T Consensus       220 -----~lPef~gcs~L~-Elh~g~N----~i~~lpae~~~~L~~l~vLDLRdNklk  265 (565)
T KOG0472|consen  220 -----FLPEFPGCSLLK-ELHVGEN----QIEMLPAEHLKHLNSLLVLDLRDNKLK  265 (565)
T ss_pred             -----cCCCCCccHHHH-HHHhccc----HHHhhHHHHhcccccceeeeccccccc
Confidence                 333444444444 4444311    023334333 35666666666666554

>PLN03210 Resistant to P

Probab=99.28  E-value=2.4e-11  Score=125.10  Aligned_cols=83  Identities=22%  Similarity=0.261  Sum_probs=49.4

Q ss_pred             ceEEEeecCCCCCCchhhhcCCCCcEEEeccCCCCCCCcCccchhhhcCCCCCcEEEeecccCCcc-CcccCccccCCCC
Q 039475           39 LRHLTLMLGLPTKFPVSIFDAKKLRSLSLFYDSKGQSAASPVLQGLFDQLTCLRALKIEELWYGDQ-TIEIPKGLENLIH  117 (286)
Q Consensus        39 ~r~ls~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~-i~~lP~~i~~L~~  117 (286)
                      .+.|.+..+....++..+..+++|+.|++.++.....     +|. +..+++|+.|+|++    |. +..+|.+|++|.+
T Consensus       613 L~~L~L~~s~l~~L~~~~~~l~~Lk~L~Ls~~~~l~~-----ip~-ls~l~~Le~L~L~~----c~~L~~lp~si~~L~~  682 (1153)
T PLN03210        613 LVKLQMQGSKLEKLWDGVHSLTGLRNIDLRGSKNLKE-----IPD-LSMATNLETLKLSD----CSSLVELPSSIQYLNK  682 (1153)
T ss_pred             CcEEECcCccccccccccccCCCCCEEECCCCCCcCc-----CCc-cccCCcccEEEecC----CCCccccchhhhccCC
Confidence            3344444444444444555566666666665543221     443 56677777777777    54 6677777777777


Q ss_pred             CcEEeccc---ccccCC
Q 039475          118 LRYLKLSA---VEELSE  131 (286)
Q Consensus       118 Lr~L~L~~---~~~LP~  131 (286)
                      |++|++++   ++.+|.
T Consensus       683 L~~L~L~~c~~L~~Lp~  699 (1153)
T PLN03210        683 LEDLDMSRCENLEILPT  699 (1153)
T ss_pred             CCEEeCCCCCCcCccCC
Confidence            77777775   555554

syringae 6; Provisional

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]

Probab=99.16  E-value=5.5e-12  Score=121.15  Aligned_cols=88  Identities=23%  Similarity=0.206  Sum_probs=74.8

Q ss_pred             ccCCceEEEeecCCCCCCchhhhcCCCCcEEEeccCCCCCCCcCccchhhhcCCCCCcEEEeecccCCccCcccCccccC
Q 039475           35 CQEKLRHLTLMLGLPTKFPVSIFDAKKLRSLSLFYDSKGQSAASPVLQGLFDQLTCLRALKIEELWYGDQTIEIPKGLEN  114 (286)
Q Consensus        35 ~~~~~r~ls~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~i~~lP~~i~~  114 (286)
                      .+.+..++++..+....+|.++..+.+|..+....|....      +|..+.....|++|.+..    |.+.++|...+.
T Consensus       239 ~p~nl~~~dis~n~l~~lp~wi~~~~nle~l~~n~N~l~~------lp~ri~~~~~L~~l~~~~----nel~yip~~le~  308 (1081)
T KOG0618|consen  239 VPLNLQYLDISHNNLSNLPEWIGACANLEALNANHNRLVA------LPLRISRITSLVSLSAAY----NELEYIPPFLEG  308 (1081)
T ss_pred             ccccceeeecchhhhhcchHHHHhcccceEecccchhHHh------hHHHHhhhhhHHHHHhhh----hhhhhCCCcccc
Confidence            4677888888888888889999999999999999988743      777777888889888888    888999988888


Q ss_pred             CCCCcEEeccc--ccccCCC
Q 039475          115 LIHLRYLKLSA--VEELSET  132 (286)
Q Consensus       115 L~~Lr~L~L~~--~~~LP~~  132 (286)
                      +++|+.|+|..  +..+|+.
T Consensus       309 ~~sL~tLdL~~N~L~~lp~~  328 (1081)
T KOG0618|consen  309 LKSLRTLDLQSNNLPSLPDN  328 (1081)
T ss_pred             cceeeeeeehhccccccchH
Confidence            99999999987  7777776

>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]

Probab=99.05  E-value=8.2e-12  Score=114.49  Aligned_cols=166  Identities=25%  Similarity=0.232  Sum_probs=118.0

Q ss_pred             eecCCCCCCchhhhcCCCCcEEEeccCCCCCCCcCccchhhhcCCCCCcEEEeecccCCccCcccCccccCCCCCcEEec
Q 039475           44 LMLGLPTKFPVSIFDAKKLRSLSLFYDSKGQSAASPVLQGLFDQLTCLRALKIEELWYGDQTIEIPKGLENLIHLRYLKL  123 (286)
Q Consensus        44 ~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~i~~lP~~i~~L~~Lr~L~L  123 (286)
                      ++.+.+..+|..++.+-.|..++++.|....      +|..+.++..|.+|||+.    |++..+|..++.|. |+.|-+
T Consensus        82 lsrNR~~elp~~~~~f~~Le~liLy~n~~r~------ip~~i~~L~~lt~l~ls~----NqlS~lp~~lC~lp-Lkvli~  150 (722)
T KOG0532|consen   82 LSRNRFSELPEEACAFVSLESLILYHNCIRT------IPEAICNLEALTFLDLSS----NQLSHLPDGLCDLP-LKVLIV  150 (722)
T ss_pred             ccccccccCchHHHHHHHHHHHHHHhcccee------cchhhhhhhHHHHhhhcc----chhhcCChhhhcCc-ceeEEE
Confidence            4444444555555555666666666555432      555566666666666666    66666666666665 666666


Q ss_pred             ccccccCCCCCCCCCcccccccccccCCCEEEecCCCcccccccccccccccccccccccccCCccCCCCCCcccccCcc
Q 039475          124 SAVEELSETCYCPSLKRLPQGRGKLINLRHLIFDKDYLAYMANGFERLTSLRTLSGFTVARVGGKYSSEACNLEGLRNLN  203 (286)
Q Consensus       124 ~~~~~LP~~~~~~~l~~LP~~i~~L~~L~~L~l~~~~~~~lP~~i~~L~~L~~L~~~~~~~~~~~~~~~~~~~~~l~~L~  203 (286)
                      ++          ++++.+|..|+-+..|.+|+.+.|.+..+|..++.|++|+.|.+..+...        ..+.++..|+
T Consensus       151 sN----------Nkl~~lp~~ig~~~tl~~ld~s~nei~slpsql~~l~slr~l~vrRn~l~--------~lp~El~~Lp  212 (722)
T KOG0532|consen  151 SN----------NKLTSLPEEIGLLPTLAHLDVSKNEIQSLPSQLGYLTSLRDLNVRRNHLE--------DLPEELCSLP  212 (722)
T ss_pred             ec----------CccccCCcccccchhHHHhhhhhhhhhhchHHhhhHHHHHHHHHhhhhhh--------hCCHHHhCCc
Confidence            54          78999999999888999999999999999999999999999987766533        4555666665


Q ss_pred             cccceeEEcccCCcccchhhhhhcCCCCCCceEEEEeCCCC
Q 039475          204 HLRQFLRICGLGNLQMRLKINAHLEKKKNLVHLTLDFDKGE  244 (286)
Q Consensus       204 ~L~~~L~i~~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~  244 (286)
                       |. +|++.+.    ....++..+.+|++|+.|.|.+|..+
T Consensus       213 -Li-~lDfScN----kis~iPv~fr~m~~Lq~l~LenNPLq  247 (722)
T KOG0532|consen  213 -LI-RLDFSCN----KISYLPVDFRKMRHLQVLQLENNPLQ  247 (722)
T ss_pred             -ee-eeecccC----ceeecchhhhhhhhheeeeeccCCCC
Confidence             44 4666532    14567888999999999999999887

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=99.02  E-value=5.4e-10  Score=99.14  Aligned_cols=185  Identities=19%  Similarity=0.141  Sum_probs=93.8

Q ss_pred             CceEEEeecCCCC-CCchhhhcCCC---CcEEEeccCCCCCCCcCccchhhhcCC-CCCcEEEeecccCCccCc-----c
Q 039475           38 KLRHLTLMLGLPT-KFPVSIFDAKK---LRSLSLFYDSKGQSAASPVLQGLFDQL-TCLRALKIEELWYGDQTI-----E  107 (286)
Q Consensus        38 ~~r~ls~~~~~~~-~~~~~~~~l~~---Lr~L~l~~~~~~~~~~~~~~~~~~~~l-~~Lr~L~L~~~~~~~~i~-----~  107 (286)
                      +++++.+..+... ..+..+..+.+   |+.|+++++...... ...+...+..+ +.|+.|++++    +.+.     .
T Consensus        82 ~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~-~~~l~~~l~~~~~~L~~L~L~~----n~l~~~~~~~  156 (319)
T cd00116          82 GLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRG-LRLLAKGLKDLPPALEKLVLGR----NRLEGASCEA  156 (319)
T ss_pred             ceeEEEccCCCCChhHHHHHHHHhccCcccEEEeeCCccchHH-HHHHHHHHHhCCCCceEEEcCC----CcCCchHHHH
Confidence            4455555544432 12223333333   555555555432110 00022233444 5556666655    4443     2


Q ss_pred             cCccccCCCCCcEEecccccccCCCCCCCCCc-----ccccccccccCCCEEEecCCCcc-----ccccccccccccccc
Q 039475          108 IPKGLENLIHLRYLKLSAVEELSETCYCPSLK-----RLPQGRGKLINLRHLIFDKDYLA-----YMANGFERLTSLRTL  177 (286)
Q Consensus       108 lP~~i~~L~~Lr~L~L~~~~~LP~~~~~~~l~-----~LP~~i~~L~~L~~L~l~~~~~~-----~lP~~i~~L~~L~~L  177 (286)
                      ++..+..+.+|++|++++          +.+.     .++..+..+++|++|++++|.+.     .++..+..+++|++|
T Consensus       157 ~~~~~~~~~~L~~L~l~~----------n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L  226 (319)
T cd00116         157 LAKALRANRDLKELNLAN----------NGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVL  226 (319)
T ss_pred             HHHHHHhCCCcCEEECcC----------CCCchHHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEE
Confidence            333444555566666653          2233     34445556668888888777664     233345666778877


Q ss_pred             ccccccccCCccCCCCCCccccc-----CcccccceeEEcccCCccc-chhhhhhcCCCCCCceEEEEeCCCCC
Q 039475          178 SGFTVARVGGKYSSEACNLEGLR-----NLNHLRQFLRICGLGNLQM-RLKINAHLEKKKNLVHLTLDFDKGED  245 (286)
Q Consensus       178 ~~~~~~~~~~~~~~~~~~~~~l~-----~L~~L~~~L~i~~l~~~~~-~~~~~~~l~~l~~L~~L~L~~~~~~~  245 (286)
                      ++..+...       ...+..+.     ..++|+ +|.+.++.-... ...+...+..+++|++++++.|...+
T Consensus       227 ~ls~n~l~-------~~~~~~l~~~~~~~~~~L~-~L~l~~n~i~~~~~~~l~~~~~~~~~L~~l~l~~N~l~~  292 (319)
T cd00116         227 NLGDNNLT-------DAGAAALASALLSPNISLL-TLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGNKFGE  292 (319)
T ss_pred             ecCCCcCc-------hHHHHHHHHHHhccCCCce-EEEccCCCCCcHHHHHHHHHHhcCCCccEEECCCCCCcH
Confidence            77665432       11111111     124555 666665422211 34455666677888888888887764

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]

Probab=99.01  E-value=1.3e-10  Score=107.13  Aligned_cols=189  Identities=17%  Similarity=0.125  Sum_probs=88.8

Q ss_pred             ceEEEeecCCCCCC-chhhhcCCCCcEEEeccCCCCCCCcCccchhhhcCCCCCcEEEeecccCCccCccc-CccccCCC
Q 039475           39 LRHLTLMLGLPTKF-PVSIFDAKKLRSLSLFYDSKGQSAASPVLQGLFDQLTCLRALKIEELWYGDQTIEI-PKGLENLI  116 (286)
Q Consensus        39 ~r~ls~~~~~~~~~-~~~~~~l~~Lr~L~l~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~i~~l-P~~i~~L~  116 (286)
                      +.+|.+..|.+..+ -..|..+.+|-+|.++.|.....     .+..|+++++|+.|+|..    |.|..+ --.|..|.
T Consensus       175 i~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNrittL-----p~r~Fk~L~~L~~LdLnr----N~irive~ltFqgL~  245 (873)
T KOG4194|consen  175 IKKLNLASNRITTLETGHFDSLNSLLTLKLSRNRITTL-----PQRSFKRLPKLESLDLNR----NRIRIVEGLTFQGLP  245 (873)
T ss_pred             ceEEeeccccccccccccccccchheeeecccCccccc-----CHHHhhhcchhhhhhccc----cceeeehhhhhcCch
Confidence            44555555544222 23344455555555555554432     334555566666666655    554433 22444555


Q ss_pred             CCcEEeccc--ccccCCC-C-CCCCCccc----------c-ccccccc------------------------CCCEEEec
Q 039475          117 HLRYLKLSA--VEELSET-C-YCPSLKRL----------P-QGRGKLI------------------------NLRHLIFD  157 (286)
Q Consensus       117 ~Lr~L~L~~--~~~LP~~-~-~~~~l~~L----------P-~~i~~L~------------------------~L~~L~l~  157 (286)
                      .|+.|.+..  +..|-++ + +|.+++.|          - .++-+|+                        +|++|+++
T Consensus       246 Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI~rih~d~WsftqkL~~LdLs  325 (873)
T KOG4194|consen  246 SLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYNAIQRIHIDSWSFTQKLKELDLS  325 (873)
T ss_pred             hhhhhhhhhcCcccccCcceeeecccceeecccchhhhhhcccccccchhhhhccchhhhheeecchhhhcccceeEecc
Confidence            555555544  4455544 3 33332211          1 1233444                        44445555


Q ss_pred             CCCccccccc-ccccccccccccccccccCCccCCCCCCcccccCcccccceeEEcccCCcccchhhhhhcCCCCCCceE
Q 039475          158 KDYLAYMANG-FERLTSLRTLSGFTVARVGGKYSSEACNLEGLRNLNHLRQFLRICGLGNLQMRLKINAHLEKKKNLVHL  236 (286)
Q Consensus       158 ~~~~~~lP~~-i~~L~~L~~L~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~~L~i~~l~~~~~~~~~~~~l~~l~~L~~L  236 (286)
                      .|.+..++++ |..|..|++|.+..+...       .-.-..+..|++|+ .|.+...+-..-.+.....+..|+.|++|
T Consensus       326 ~N~i~~l~~~sf~~L~~Le~LnLs~Nsi~-------~l~e~af~~lssL~-~LdLr~N~ls~~IEDaa~~f~gl~~LrkL  397 (873)
T KOG4194|consen  326 SNRITRLDEGSFRVLSQLEELNLSHNSID-------HLAEGAFVGLSSLH-KLDLRSNELSWCIEDAAVAFNGLPSLRKL  397 (873)
T ss_pred             ccccccCChhHHHHHHHhhhhcccccchH-------HHHhhHHHHhhhhh-hhcCcCCeEEEEEecchhhhccchhhhhe
Confidence            5555555443 555555555554443322       00011233334444 44443321111133344567778888888


Q ss_pred             EEEeCCCC
Q 039475          237 TLDFDKGE  244 (286)
Q Consensus       237 ~L~~~~~~  244 (286)
                      .+..|+..
T Consensus       398 ~l~gNqlk  405 (873)
T KOG4194|consen  398 RLTGNQLK  405 (873)
T ss_pred             eecCceee
Confidence            88888775

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]

Probab=98.96  E-value=3.5e-10  Score=104.35  Aligned_cols=144  Identities=23%  Similarity=0.272  Sum_probs=78.0

Q ss_pred             CceEEEeecCCCCCC-chhhhcCCCCcEEEeccCCCCCCCc-------------------CccchhhhcCCCCCcEEEee
Q 039475           38 KLRHLTLMLGLPTKF-PVSIFDAKKLRSLSLFYDSKGQSAA-------------------SPVLQGLFDQLTCLRALKIE   97 (286)
Q Consensus        38 ~~r~ls~~~~~~~~~-~~~~~~l~~Lr~L~l~~~~~~~~~~-------------------~~~~~~~~~~l~~Lr~L~L~   97 (286)
                      .+.+|.+.+|.+..+ .+.+..++.||+|+++.|.......                   ..+-.+.|.++..|-+|.|+
T Consensus       126 hl~~L~L~~N~I~sv~se~L~~l~alrslDLSrN~is~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLs  205 (873)
T KOG4194|consen  126 HLEKLDLRHNLISSVTSEELSALPALRSLDLSRNLISEIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLS  205 (873)
T ss_pred             ceeEEeeeccccccccHHHHHhHhhhhhhhhhhchhhcccCCCCCCCCCceEEeeccccccccccccccccchheeeecc
Confidence            355566665555322 3444555566666666554322100                   00011234444455555555


Q ss_pred             cccCCccCcccCc-cccCCCCCcEEeccc--cccc--------CCC-C---CCCCCccccc-ccccccCCCEEEecCCCc
Q 039475           98 ELWYGDQTIEIPK-GLENLIHLRYLKLSA--VEEL--------SET-C---YCPSLKRLPQ-GRGKLINLRHLIFDKDYL  161 (286)
Q Consensus        98 ~~~~~~~i~~lP~-~i~~L~~Lr~L~L~~--~~~L--------P~~-~---~~~~l~~LP~-~i~~L~~L~~L~l~~~~~  161 (286)
                      .    |.++.+|. .|.+|.+|+.|+|..  +...        |.- .   .-+++..|-. .|..|.++++|++..|++
T Consensus       206 r----NrittLp~r~Fk~L~~L~~LdLnrN~irive~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l  281 (873)
T KOG4194|consen  206 R----NRITTLPQRSFKRLPKLESLDLNRNRIRIVEGLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRL  281 (873)
T ss_pred             c----CcccccCHHHhhhcchhhhhhccccceeeehhhhhcCchhhhhhhhhhcCcccccCcceeeecccceeecccchh
Confidence            5    55555554 445566666666654  2211        111 0   2233444443 357788888888888888


Q ss_pred             cccccc-cccccccccccccccccc
Q 039475          162 AYMANG-FERLTSLRTLSGFTVARV  185 (286)
Q Consensus       162 ~~lP~~-i~~L~~L~~L~~~~~~~~  185 (286)
                      ..+-.+ +-.|+.|+.|+++.+...
T Consensus       282 ~~vn~g~lfgLt~L~~L~lS~NaI~  306 (873)
T KOG4194|consen  282 QAVNEGWLFGLTSLEQLDLSYNAIQ  306 (873)
T ss_pred             hhhhcccccccchhhhhccchhhhh
Confidence            877654 778888888888776544

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]

Probab=98.96  E-value=1.3e-10  Score=111.89  Aligned_cols=110  Identities=25%  Similarity=0.296  Sum_probs=75.2

Q ss_pred             ccCCCCCcEEecccccccCCCCCCCCCcccccc-cccccCCCEEEecCCCcccccccccccccccccccccccccCCccC
Q 039475          112 LENLIHLRYLKLSAVEELSETCYCPSLKRLPQG-RGKLINLRHLIFDKDYLAYMANGFERLTSLRTLSGFTVARVGGKYS  190 (286)
Q Consensus       112 i~~L~~Lr~L~L~~~~~LP~~~~~~~l~~LP~~-i~~L~~L~~L~l~~~~~~~lP~~i~~L~~L~~L~~~~~~~~~~~~~  190 (286)
                      +-+.+|||.|+|++          +.+.++|++ +.++..|++|+++||+++.+|..+.++..|++|....+...     
T Consensus       379 l~~~~hLKVLhLsy----------NrL~~fpas~~~kle~LeeL~LSGNkL~~Lp~tva~~~~L~tL~ahsN~l~-----  443 (1081)
T KOG0618|consen  379 LVNFKHLKVLHLSY----------NRLNSFPASKLRKLEELEELNLSGNKLTTLPDTVANLGRLHTLRAHSNQLL-----  443 (1081)
T ss_pred             hccccceeeeeecc----------cccccCCHHHHhchHHhHHHhcccchhhhhhHHHHhhhhhHHHhhcCCcee-----
Confidence            34556666666664          677788864 58888899999999999999988888899998877655432     


Q ss_pred             CCCCCcccccCcccccceeEEcccCCcccchhhhhhcCCCCCCceEEEEeCCCC
Q 039475          191 SEACNLEGLRNLNHLRQFLRICGLGNLQMRLKINAHLEKKKNLVHLTLDFDKGE  244 (286)
Q Consensus       191 ~~~~~~~~l~~L~~L~~~L~i~~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~  244 (286)
                          ..+++..+++|+ .+++....- . ...++..+. .++|++|++++|...
T Consensus       444 ----~fPe~~~l~qL~-~lDlS~N~L-~-~~~l~~~~p-~p~LkyLdlSGN~~l  489 (1081)
T KOG0618|consen  444 ----SFPELAQLPQLK-VLDLSCNNL-S-EVTLPEALP-SPNLKYLDLSGNTRL  489 (1081)
T ss_pred             ----echhhhhcCcce-EEecccchh-h-hhhhhhhCC-CcccceeeccCCccc
Confidence                334777777777 677653211 0 122222222 278999999998754

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=98.94  E-value=4.2e-09  Score=103.15  Aligned_cols=118  Identities=14%  Similarity=0.204  Sum_probs=78.3

Q ss_pred             ccCCceEEEeecCCCCCCchhhhcCCCCcEEEeccCCCCCCCcCccchhhhcCCCCCcEEEeecccCCccCcccCccccC
Q 039475           35 CQEKLRHLTLMLGLPTKFPVSIFDAKKLRSLSLFYDSKGQSAASPVLQGLFDQLTCLRALKIEELWYGDQTIEIPKGLEN  114 (286)
Q Consensus        35 ~~~~~r~ls~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~i~~lP~~i~~  114 (286)
                      ++..++.+.+..|.+..+|..+.  ++|++|++.+|....      +|..+.  ..|+.|+|++    |.+..+|..+. 
T Consensus       197 Ip~~L~~L~Ls~N~LtsLP~~l~--~nL~~L~Ls~N~Lts------LP~~l~--~~L~~L~Ls~----N~L~~LP~~l~-  261 (754)
T PRK15370        197 IPEQITTLILDNNELKSLPENLQ--GNIKTLYANSNQLTS------IPATLP--DTIQEMELSI----NRITELPERLP-  261 (754)
T ss_pred             cccCCcEEEecCCCCCcCChhhc--cCCCEEECCCCcccc------CChhhh--ccccEEECcC----CccCcCChhHh-
Confidence            45667888888887777776653  578888888876542      454332  3688888888    88888887765 


Q ss_pred             CCCCcEEecccccccCCCCCCCCCcccccccccccCCCEEEecCCCcccccccccccccccccccccc
Q 039475          115 LIHLRYLKLSAVEELSETCYCPSLKRLPQGRGKLINLRHLIFDKDYLAYMANGFERLTSLRTLSGFTV  182 (286)
Q Consensus       115 L~~Lr~L~L~~~~~LP~~~~~~~l~~LP~~i~~L~~L~~L~l~~~~~~~lP~~i~~L~~L~~L~~~~~  182 (286)
                       ..|++|++++          +.+..+|..+.  .+|++|++++|++..+|..+.  .+|+.|++..+
T Consensus       262 -s~L~~L~Ls~----------N~L~~LP~~l~--~sL~~L~Ls~N~Lt~LP~~lp--~sL~~L~Ls~N  314 (754)
T PRK15370        262 -SALQSLDLFH----------NKISCLPENLP--EELRYLSVYDNSIRTLPAHLP--SGITHLNVQSN  314 (754)
T ss_pred             -CCCCEEECcC----------CccCccccccC--CCCcEEECCCCccccCcccch--hhHHHHHhcCC
Confidence             4688888874          56666666554  367777777777766665443  24555554443

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=98.88  E-value=2.8e-09  Score=94.52  Aligned_cols=184  Identities=21%  Similarity=0.234  Sum_probs=112.8

Q ss_pred             ceEEEeecCCCC-------CCchhhhcCCCCcEEEeccCCCCCCCcCccchhhhcCCCC---CcEEEeecccCCccCc--
Q 039475           39 LRHLTLMLGLPT-------KFPVSIFDAKKLRSLSLFYDSKGQSAASPVLQGLFDQLTC---LRALKIEELWYGDQTI--  106 (286)
Q Consensus        39 ~r~ls~~~~~~~-------~~~~~~~~l~~Lr~L~l~~~~~~~~~~~~~~~~~~~~l~~---Lr~L~L~~~~~~~~i~--  106 (286)
                      .+++.+..+...       .++..+..+++|+.|++.++.....     .+..+..+..   |++|++++    +.+.  
T Consensus        53 l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~-----~~~~~~~l~~~~~L~~L~ls~----~~~~~~  123 (319)
T cd00116          53 LKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNALGPD-----GCGVLESLLRSSSLQELKLNN----NGLGDR  123 (319)
T ss_pred             ceEEeccccccCCcchHHHHHHHHHHhcCceeEEEccCCCCChh-----HHHHHHHHhccCcccEEEeeC----CccchH
Confidence            566666554433       1234566778888888888775432     3444444444   88888888    6654  


Q ss_pred             ---ccCccccCC-CCCcEEecccccccCCCCCCCCCc-----ccccccccccCCCEEEecCCCcc-----cccccccccc
Q 039475          107 ---EIPKGLENL-IHLRYLKLSAVEELSETCYCPSLK-----RLPQGRGKLINLRHLIFDKDYLA-----YMANGFERLT  172 (286)
Q Consensus       107 ---~lP~~i~~L-~~Lr~L~L~~~~~LP~~~~~~~l~-----~LP~~i~~L~~L~~L~l~~~~~~-----~lP~~i~~L~  172 (286)
                         .+...+..+ .+|+.|++++          +.+.     .++..+..+.+|++|++.+|.+.     .++..+..++
T Consensus       124 ~~~~l~~~l~~~~~~L~~L~L~~----------n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~  193 (319)
T cd00116         124 GLRLLAKGLKDLPPALEKLVLGR----------NRLEGASCEALAKALRANRDLKELNLANNGIGDAGIRALAEGLKANC  193 (319)
T ss_pred             HHHHHHHHHHhCCCCceEEEcCC----------CcCCchHHHHHHHHHHhCCCcCEEECcCCCCchHHHHHHHHHHHhCC
Confidence               334456667 8888888885          3344     45666778889999999988776     2444566667


Q ss_pred             cccccccccccccCCccCCCCCCcccccCcccccceeEEcccCCccc-chhhhhhc-CCCCCCceEEEEeCCCCC
Q 039475          173 SLRTLSGFTVARVGGKYSSEACNLEGLRNLNHLRQFLRICGLGNLQM-RLKINAHL-EKKKNLVHLTLDFDKGED  245 (286)
Q Consensus       173 ~L~~L~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~~L~i~~l~~~~~-~~~~~~~l-~~l~~L~~L~L~~~~~~~  245 (286)
                      +|++|++..+......   .......+..+++|+ .|.+.+..-... ...+...+ ...+.|++|++++|..++
T Consensus       194 ~L~~L~L~~n~i~~~~---~~~l~~~~~~~~~L~-~L~ls~n~l~~~~~~~l~~~~~~~~~~L~~L~l~~n~i~~  264 (319)
T cd00116         194 NLEVLDLNNNGLTDEG---ASALAETLASLKSLE-VLNLGDNNLTDAGAAALASALLSPNISLLTLSLSCNDITD  264 (319)
T ss_pred             CCCEEeccCCccChHH---HHHHHHHhcccCCCC-EEecCCCcCchHHHHHHHHHHhccCCCceEEEccCCCCCc
Confidence            8999888776543100   001122345566677 787775422111 12222222 135789999999998763

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=98.87  E-value=1.3e-09  Score=88.25  Aligned_cols=101  Identities=26%  Similarity=0.382  Sum_probs=23.1

Q ss_pred             cCCCCcEEEeccCCCCCCCcCccchhhhc-CCCCCcEEEeecccCCccCcccCccccCCCCCcEEecccccccCCCCCCC
Q 039475           58 DAKKLRSLSLFYDSKGQSAASPVLQGLFD-QLTCLRALKIEELWYGDQTIEIPKGLENLIHLRYLKLSAVEELSETCYCP  136 (286)
Q Consensus        58 ~l~~Lr~L~l~~~~~~~~~~~~~~~~~~~-~l~~Lr~L~L~~~~~~~~i~~lP~~i~~L~~Lr~L~L~~~~~LP~~~~~~  136 (286)
                      +..++|.|.+.++....      +.. ++ .+.+|++|+|++    |.+..++ .+..|.+|+.|++++          +
T Consensus        17 n~~~~~~L~L~~n~I~~------Ie~-L~~~l~~L~~L~Ls~----N~I~~l~-~l~~L~~L~~L~L~~----------N   74 (175)
T PF14580_consen   17 NPVKLRELNLRGNQIST------IEN-LGATLDKLEVLDLSN----NQITKLE-GLPGLPRLKTLDLSN----------N   74 (175)
T ss_dssp             -------------------------S---TT-TT--EEE-TT----S--S--T-T----TT--EEE--S----------S
T ss_pred             ccccccccccccccccc------ccc-hhhhhcCCCEEECCC----CCCcccc-CccChhhhhhcccCC----------C
Confidence            34445555555555332      111 22 345555666665    5555554 455555555555553          5


Q ss_pred             CCccccccc-ccccCCCEEEecCCCccccc--ccccccccccccccc
Q 039475          137 SLKRLPQGR-GKLINLRHLIFDKDYLAYMA--NGFERLTSLRTLSGF  180 (286)
Q Consensus       137 ~l~~LP~~i-~~L~~L~~L~l~~~~~~~lP--~~i~~L~~L~~L~~~  180 (286)
                      .++.++..+ ..+++|++|++++|++..+-  ..+..+++|+.|++.
T Consensus        75 ~I~~i~~~l~~~lp~L~~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~  121 (175)
T PF14580_consen   75 RISSISEGLDKNLPNLQELYLSNNKISDLNELEPLSSLPKLRVLSLE  121 (175)
T ss_dssp             ---S-CHHHHHH-TT--EEE-TTS---SCCCCGGGGG-TT--EEE-T
T ss_pred             CCCccccchHHhCCcCCEEECcCCcCCChHHhHHHHcCCCcceeecc
Confidence            555554444 24555555555555554332  123344444444443

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]

Probab=98.83  E-value=4.4e-09  Score=104.60  Aligned_cols=105  Identities=29%  Similarity=0.305  Sum_probs=85.9

Q ss_pred             CceEEEeecCC--CCCCchh-hhcCCCCcEEEeccCCCCCCCcCccchhhhcCCCCCcEEEeecccCCccCcccCccccC
Q 039475           38 KLRHLTLMLGL--PTKFPVS-IFDAKKLRSLSLFYDSKGQSAASPVLQGLFDQLTCLRALKIEELWYGDQTIEIPKGLEN  114 (286)
Q Consensus        38 ~~r~ls~~~~~--~~~~~~~-~~~l~~Lr~L~l~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~i~~lP~~i~~  114 (286)
                      +.+-+-+..+.  ...++.. |..++.||+|++++|.....     +|..++++-+||||++++    +.+..+|.++++
T Consensus       546 ~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~-----LP~~I~~Li~LryL~L~~----t~I~~LP~~l~~  616 (889)
T KOG4658|consen  546 KLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSK-----LPSSIGELVHLRYLDLSD----TGISHLPSGLGN  616 (889)
T ss_pred             ccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCc-----CChHHhhhhhhhcccccC----CCccccchHHHH
Confidence            57888888775  3444443 67899999999999765443     999999999999999999    999999999999


Q ss_pred             CCCCcEEecccccccCCCCCCCCCcccccccccccCCCEEEecCCC
Q 039475          115 LIHLRYLKLSAVEELSETCYCPSLKRLPQGRGKLINLRHLIFDKDY  160 (286)
Q Consensus       115 L~~Lr~L~L~~~~~LP~~~~~~~l~~LP~~i~~L~~L~~L~l~~~~  160 (286)
                      |+.|.||++..         ...+..+|..+..|++||+|.+....
T Consensus       617 Lk~L~~Lnl~~---------~~~l~~~~~i~~~L~~Lr~L~l~~s~  653 (889)
T KOG4658|consen  617 LKKLIYLNLEV---------TGRLESIPGILLELQSLRVLRLPRSA  653 (889)
T ss_pred             HHhhheecccc---------ccccccccchhhhcccccEEEeeccc
Confidence            99999999985         44455566667779999999987643

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=98.76  E-value=2e-08  Score=98.43  Aligned_cols=127  Identities=19%  Similarity=0.259  Sum_probs=79.6

Q ss_pred             cCCceEEEeecCCCCCCchhhhcCCCCcEEEeccCCCCCCCcCccchhhhcCCCCCcEEEeecccCCccCcccCccccCC
Q 039475           36 QEKLRHLTLMLGLPTKFPVSIFDAKKLRSLSLFYDSKGQSAASPVLQGLFDQLTCLRALKIEELWYGDQTIEIPKGLENL  115 (286)
Q Consensus        36 ~~~~r~ls~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~i~~lP~~i~~L  115 (286)
                      ..+++.|.+..+.+..+|..+.  .+|+.|++++|....      +|..+.  ..|++|++++    |.+..+|..+.  
T Consensus       219 ~~nL~~L~Ls~N~LtsLP~~l~--~~L~~L~Ls~N~L~~------LP~~l~--s~L~~L~Ls~----N~L~~LP~~l~--  282 (754)
T PRK15370        219 QGNIKTLYANSNQLTSIPATLP--DTIQEMELSINRITE------LPERLP--SALQSLDLFH----NKISCLPENLP--  282 (754)
T ss_pred             ccCCCEEECCCCccccCChhhh--ccccEEECcCCccCc------CChhHh--CCCCEEECcC----CccCccccccC--
Confidence            3568888888888777776553  478888888887542      555443  4688888888    88888887665  


Q ss_pred             CCCcEEeccc--ccccCCC-C--------CCCCCcccccccccccCCCEEEecCCCcccccccccccccccccccccc
Q 039475          116 IHLRYLKLSA--VEELSET-C--------YCPSLKRLPQGRGKLINLRHLIFDKDYLAYMANGFERLTSLRTLSGFTV  182 (286)
Q Consensus       116 ~~Lr~L~L~~--~~~LP~~-~--------~~~~l~~LP~~i~~L~~L~~L~l~~~~~~~lP~~i~~L~~L~~L~~~~~  182 (286)
                      .+|++|++++  ++.+|.. .        ..+.+..+|..+.  ++|+.|++.+|.+..+|..+.  ++|+.|++..+
T Consensus       283 ~sL~~L~Ls~N~Lt~LP~~lp~sL~~L~Ls~N~Lt~LP~~l~--~sL~~L~Ls~N~Lt~LP~~l~--~sL~~L~Ls~N  356 (754)
T PRK15370        283 EELRYLSVYDNSIRTLPAHLPSGITHLNVQSNSLTALPETLP--PGLKTLEAGENALTSLPASLP--PELQVLDVSKN  356 (754)
T ss_pred             CCCcEEECCCCccccCcccchhhHHHHHhcCCccccCCcccc--ccceeccccCCccccCChhhc--CcccEEECCCC
Confidence            4788888887  6666653 2        2334555554332  345555555555555554432  34444444433

>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]

Probab=98.70  E-value=2.2e-09  Score=94.92  Aligned_cols=192  Identities=18%  Similarity=0.193  Sum_probs=131.4

Q ss_pred             cccCCceEEEeecCCCCCCc-hhhhcCCCCcEEEeccCCCCCCCcCccchhhhcCCCCCcEEEeecccCCccCcccCc-c
Q 039475           34 SCQEKLRHLTLMLGLPTKFP-VSIFDAKKLRSLSLFYDSKGQSAASPVLQGLFDQLTCLRALKIEELWYGDQTIEIPK-G  111 (286)
Q Consensus        34 ~~~~~~r~ls~~~~~~~~~~-~~~~~l~~Lr~L~l~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~i~~lP~-~  111 (286)
                      +.|...-.+.+..|.+..+| .+|..+++||.|+++.|..+..     -|++|.++..|-.|-+.++   +.|+++|. .
T Consensus        64 ~LP~~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I-----~p~AF~GL~~l~~Lvlyg~---NkI~~l~k~~  135 (498)
T KOG4237|consen   64 NLPPETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFI-----APDAFKGLASLLSLVLYGN---NKITDLPKGA  135 (498)
T ss_pred             cCCCcceEEEeccCCcccCChhhccchhhhceecccccchhhc-----ChHhhhhhHhhhHHHhhcC---CchhhhhhhH
Confidence            45677788888889887775 5678999999999999987643     7889999998877766661   55888875 4


Q ss_pred             ccCCCCCcEE------------------------eccc--ccccCCC-C-------------------------------
Q 039475          112 LENLIHLRYL------------------------KLSA--VEELSET-C-------------------------------  133 (286)
Q Consensus       112 i~~L~~Lr~L------------------------~L~~--~~~LP~~-~-------------------------------  133 (286)
                      |+.|..|+.|                        .+.+  +..++.. +                               
T Consensus       136 F~gL~slqrLllNan~i~Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np~icdCnL~wla~~~a~  215 (498)
T KOG4237|consen  136 FGGLSSLQRLLLNANHINCIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNPFICDCNLPWLADDLAM  215 (498)
T ss_pred             hhhHHHHHHHhcChhhhcchhHHHHHHhhhcchhcccchhhhhhccccccchhccchHhhhcCccccccccchhhhHHhh
Confidence            4555444444                        4333  3444442 2                               


Q ss_pred             -----------------------------CCC-------------CCcccc-cccccccCCCEEEecCCCcccccc-ccc
Q 039475          134 -----------------------------YCP-------------SLKRLP-QGRGKLINLRHLIFDKDYLAYMAN-GFE  169 (286)
Q Consensus       134 -----------------------------~~~-------------~l~~LP-~~i~~L~~L~~L~l~~~~~~~lP~-~i~  169 (286)
                                                   .|.             -....| ..|.+|++|+.|++++|.++.+-+ +|.
T Consensus       216 ~~ietsgarc~~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~~i~~~aFe  295 (498)
T KOG4237|consen  216 NPIETSGARCVSPYRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKITRIEDGAFE  295 (498)
T ss_pred             chhhcccceecchHHHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccceEeccCCCccchhhhhhhc
Confidence                                         111             111223 247899999999999999998855 499


Q ss_pred             ccccccccccccccccCCccCCCCCCcccccCcccccceeEEcccCCcccchhhhhhcCCCCCCceEEEEeCCCC
Q 039475          170 RLTSLRTLSGFTVARVGGKYSSEACNLEGLRNLNHLRQFLRICGLGNLQMRLKINAHLEKKKNLVHLTLDFDKGE  244 (286)
Q Consensus       170 ~L~~L~~L~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~~L~i~~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~  244 (286)
                      .+..++.|.+..+...       ...-..+..|..|+ .|++.+.   +-.-..+..+..+..|..|+|-.|...
T Consensus       296 ~~a~l~eL~L~~N~l~-------~v~~~~f~~ls~L~-tL~L~~N---~it~~~~~aF~~~~~l~~l~l~~Np~~  359 (498)
T KOG4237|consen  296 GAAELQELYLTRNKLE-------FVSSGMFQGLSGLK-TLSLYDN---QITTVAPGAFQTLFSLSTLNLLSNPFN  359 (498)
T ss_pred             chhhhhhhhcCcchHH-------HHHHHhhhccccce-eeeecCC---eeEEEecccccccceeeeeehccCccc
Confidence            9999999988776544       22333456666666 6777643   113445677888888888888777643

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=98.67  E-value=2.6e-08  Score=80.70  Aligned_cols=127  Identities=27%  Similarity=0.307  Sum_probs=56.5

Q ss_pred             cCCceEEEeecCCCCCCchhhh-cCCCCcEEEeccCCCCCCCcCccchhhhcCCCCCcEEEeecccCCccCcccCccc-c
Q 039475           36 QEKLRHLTLMLGLPTKFPVSIF-DAKKLRSLSLFYDSKGQSAASPVLQGLFDQLTCLRALKIEELWYGDQTIEIPKGL-E  113 (286)
Q Consensus        36 ~~~~r~ls~~~~~~~~~~~~~~-~l~~Lr~L~l~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~i~~lP~~i-~  113 (286)
                      +.+.|.|++.++.+..+ +.+. .+.+|++|++++|....      +. .+..++.|++|++++    |.+..+++.+ .
T Consensus        18 ~~~~~~L~L~~n~I~~I-e~L~~~l~~L~~L~Ls~N~I~~------l~-~l~~L~~L~~L~L~~----N~I~~i~~~l~~   85 (175)
T PF14580_consen   18 PVKLRELNLRGNQISTI-ENLGATLDKLEVLDLSNNQITK------LE-GLPGLPRLKTLDLSN----NRISSISEGLDK   85 (175)
T ss_dssp             -------------------S--TT-TT--EEE-TTS--S--------T-T----TT--EEE--S----S---S-CHHHHH
T ss_pred             ccccccccccccccccc-cchhhhhcCCCEEECCCCCCcc------cc-CccChhhhhhcccCC----CCCCccccchHH
Confidence            45679999999888654 3454 58899999999998654      33 367899999999999    9999998766 4


Q ss_pred             CCCCCcEEecccccccCCCCCCCCCcccc--cccccccCCCEEEecCCCcccccc----cccccccccccccccccc
Q 039475          114 NLIHLRYLKLSAVEELSETCYCPSLKRLP--QGRGKLINLRHLIFDKDYLAYMAN----GFERLTSLRTLSGFTVAR  184 (286)
Q Consensus       114 ~L~~Lr~L~L~~~~~LP~~~~~~~l~~LP--~~i~~L~~L~~L~l~~~~~~~lP~----~i~~L~~L~~L~~~~~~~  184 (286)
                      .+++|+.|++++          +.+..+-  ..+..+++|++|++.+|.+...+.    -|..+++|+.|+...+..
T Consensus        86 ~lp~L~~L~L~~----------N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk~LD~~~V~~  152 (175)
T PF14580_consen   86 NLPNLQELYLSN----------NKISDLNELEPLSSLPKLRVLSLEGNPVCEKKNYRLFVIYKLPSLKVLDGQDVTE  152 (175)
T ss_dssp             H-TT--EEE-TT----------S---SCCCCGGGGG-TT--EEE-TT-GGGGSTTHHHHHHHH-TT-SEETTEETTS
T ss_pred             hCCcCCEEECcC----------CcCCChHHhHHHHcCCCcceeeccCCcccchhhHHHHHHHHcChhheeCCEEccH
Confidence            699999999986          5555443  346788999999999998876653    278899999998776653

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=98.66  E-value=1.4e-07  Score=92.50  Aligned_cols=112  Identities=22%  Similarity=0.188  Sum_probs=60.7

Q ss_pred             cCCceEEEeecCCCCCCchhhhcCCCCcEEEeccCCCCCCCcCccchhhhc-----------------CCCCCcEEEeec
Q 039475           36 QEKLRHLTLMLGLPTKFPVSIFDAKKLRSLSLFYDSKGQSAASPVLQGLFD-----------------QLTCLRALKIEE   98 (286)
Q Consensus        36 ~~~~r~ls~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~~~~~~~~~~~~~-----------------~l~~Lr~L~L~~   98 (286)
                      +..++.|.+..|.+..+|..   .++|++|++.+|....      +|..+.                 .+..|+.|++++
T Consensus       221 ~~~L~~L~L~~N~Lt~LP~l---p~~Lk~LdLs~N~Lts------LP~lp~sL~~L~Ls~N~L~~Lp~lp~~L~~L~Ls~  291 (788)
T PRK15387        221 PAHITTLVIPDNNLTSLPAL---PPELRTLEVSGNQLTS------LPVLPPGLLELSIFSNPLTHLPALPSGLCKLWIFG  291 (788)
T ss_pred             hcCCCEEEccCCcCCCCCCC---CCCCcEEEecCCccCc------ccCcccccceeeccCCchhhhhhchhhcCEEECcC
Confidence            44678888888777666642   5678888888776542      221111                 112344455555


Q ss_pred             ccCCccCcccCccccCCCCCcEEeccc--ccccCCC-C-------CCCCCcccccccccccCCCEEEecCCCcccccc
Q 039475           99 LWYGDQTIEIPKGLENLIHLRYLKLSA--VEELSET-C-------YCPSLKRLPQGRGKLINLRHLIFDKDYLAYMAN  166 (286)
Q Consensus        99 ~~~~~~i~~lP~~i~~L~~Lr~L~L~~--~~~LP~~-~-------~~~~l~~LP~~i~~L~~L~~L~l~~~~~~~lP~  166 (286)
                          |.+..+|..   +.+|++|++++  +..+|.. .       ..+.+..+|..   ..+|++|++++|++..+|.
T Consensus       292 ----N~Lt~LP~~---p~~L~~LdLS~N~L~~Lp~lp~~L~~L~Ls~N~L~~LP~l---p~~Lq~LdLS~N~Ls~LP~  359 (788)
T PRK15387        292 ----NQLTSLPVL---PPGLQELSVSDNQLASLPALPSELCKLWAYNNQLTSLPTL---PSGLQELSVSDNQLASLPT  359 (788)
T ss_pred             ----Ccccccccc---ccccceeECCCCccccCCCCcccccccccccCcccccccc---ccccceEecCCCccCCCCC
Confidence                555555532   35677777766  5555442 2       12234444431   1356666666666666554

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=98.63  E-value=2.6e-08  Score=91.42  Aligned_cols=109  Identities=25%  Similarity=0.335  Sum_probs=78.7

Q ss_pred             hhhhcCCCCcEEEeccCCCCCCCcCccchhhhcCCC-CCcEEEeecccCCccCcccCccccCCCCCcEEecccccccCCC
Q 039475           54 VSIFDAKKLRSLSLFYDSKGQSAASPVLQGLFDQLT-CLRALKIEELWYGDQTIEIPKGLENLIHLRYLKLSAVEELSET  132 (286)
Q Consensus        54 ~~~~~l~~Lr~L~l~~~~~~~~~~~~~~~~~~~~l~-~Lr~L~L~~~~~~~~i~~lP~~i~~L~~Lr~L~L~~~~~LP~~  132 (286)
                      ..+..++.+..|.+.++....      ++.....+. +|++|++++    +.+..+|..++.+++|+.|+++.       
T Consensus       110 ~~~~~~~~l~~L~l~~n~i~~------i~~~~~~~~~nL~~L~l~~----N~i~~l~~~~~~l~~L~~L~l~~-------  172 (394)
T COG4886         110 SELLELTNLTSLDLDNNNITD------IPPLIGLLKSNLKELDLSD----NKIESLPSPLRNLPNLKNLDLSF-------  172 (394)
T ss_pred             hhhhcccceeEEecCCccccc------Cccccccchhhcccccccc----cchhhhhhhhhccccccccccCC-------
Confidence            334455677777777776543      555555553 788888888    88888877788888888888875       


Q ss_pred             CCCCCCcccccccccccCCCEEEecCCCcccccccccccccccccccccc
Q 039475          133 CYCPSLKRLPQGRGKLINLRHLIFDKDYLAYMANGFERLTSLRTLSGFTV  182 (286)
Q Consensus       133 ~~~~~l~~LP~~i~~L~~L~~L~l~~~~~~~lP~~i~~L~~L~~L~~~~~  182 (286)
                         +.+.++|...+++.+|+.|++++|.+..+|..++.+..|++|.+..+
T Consensus       173 ---N~l~~l~~~~~~~~~L~~L~ls~N~i~~l~~~~~~~~~L~~l~~~~N  219 (394)
T COG4886         173 ---NDLSDLPKLLSNLSNLNNLDLSGNKISDLPPEIELLSALEELDLSNN  219 (394)
T ss_pred             ---chhhhhhhhhhhhhhhhheeccCCccccCchhhhhhhhhhhhhhcCC
Confidence               66777777777777888888888878788777766667777766555

>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]

Probab=98.63  E-value=5.9e-09  Score=96.06  Aligned_cols=130  Identities=22%  Similarity=0.288  Sum_probs=91.3

Q ss_pred             EeecCCCCCCchhhhcCCCCcEEEeccCCCCCCCcCccchhhhcCCCCCcEEEeecccCCccCcccCccccCCCCCcEEe
Q 039475           43 TLMLGLPTKFPVSIFDAKKLRSLSLFYDSKGQSAASPVLQGLFDQLTCLRALKIEELWYGDQTIEIPKGLENLIHLRYLK  122 (286)
Q Consensus        43 s~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~i~~lP~~i~~L~~Lr~L~  122 (286)
                      .+..+.+..+|..++++..|..|+++.|....      +|..+..+ -|++|-+++    |.++.+|+.||.+.+|..||
T Consensus       104 iLy~n~~r~ip~~i~~L~~lt~l~ls~NqlS~------lp~~lC~l-pLkvli~sN----Nkl~~lp~~ig~~~tl~~ld  172 (722)
T KOG0532|consen  104 ILYHNCIRTIPEAICNLEALTFLDLSSNQLSH------LPDGLCDL-PLKVLIVSN----NKLTSLPEEIGLLPTLAHLD  172 (722)
T ss_pred             HHHhccceecchhhhhhhHHHHhhhccchhhc------CChhhhcC-cceeEEEec----CccccCCcccccchhHHHhh
Confidence            34455566678888888888888888777543      55544444 368888888    88888888888777888888


Q ss_pred             ccc--ccccCCC-CCC----------CCCcccccccccccCCCEEEecCCCcccccccccccccccccccccccc
Q 039475          123 LSA--VEELSET-CYC----------PSLKRLPQGRGKLINLRHLIFDKDYLAYMANGFERLTSLRTLSGFTVAR  184 (286)
Q Consensus       123 L~~--~~~LP~~-~~~----------~~l~~LP~~i~~L~~L~~L~l~~~~~~~lP~~i~~L~~L~~L~~~~~~~  184 (286)
                      .+.  +..+|.. ++.          +.+..+|.+++.| .|..||++.|++..+|..|.+|+.||+|.+-.+..
T Consensus       173 ~s~nei~slpsql~~l~slr~l~vrRn~l~~lp~El~~L-pLi~lDfScNkis~iPv~fr~m~~Lq~l~LenNPL  246 (722)
T KOG0532|consen  173 VSKNEIQSLPSQLGYLTSLRDLNVRRNHLEDLPEELCSL-PLIRLDFSCNKISYLPVDFRKMRHLQVLQLENNPL  246 (722)
T ss_pred             hhhhhhhhchHHhhhHHHHHHHHHhhhhhhhCCHHHhCC-ceeeeecccCceeecchhhhhhhhheeeeeccCCC
Confidence            776  6667766 522          3445667777755 57777787787778887788888888776655543

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=98.53  E-value=8.5e-08  Score=87.98  Aligned_cols=173  Identities=24%  Similarity=0.218  Sum_probs=126.5

Q ss_pred             CceEEEeecCCCCCCchhhhcCC-CCcEEEeccCCCCCCCcCccchhhhcCCCCCcEEEeecccCCccCcccCccccCCC
Q 039475           38 KLRHLTLMLGLPTKFPVSIFDAK-KLRSLSLFYDSKGQSAASPVLQGLFDQLTCLRALKIEELWYGDQTIEIPKGLENLI  116 (286)
Q Consensus        38 ~~r~ls~~~~~~~~~~~~~~~l~-~Lr~L~l~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~i~~lP~~i~~L~  116 (286)
                      ....+.+..+.+..+++....++ +|+.|++.++....      +|..+..++.|+.|++++    +.+..+|...+.+.
T Consensus       117 ~l~~L~l~~n~i~~i~~~~~~~~~nL~~L~l~~N~i~~------l~~~~~~l~~L~~L~l~~----N~l~~l~~~~~~~~  186 (394)
T COG4886         117 NLTSLDLDNNNITDIPPLIGLLKSNLKELDLSDNKIES------LPSPLRNLPNLKNLDLSF----NDLSDLPKLLSNLS  186 (394)
T ss_pred             ceeEEecCCcccccCccccccchhhcccccccccchhh------hhhhhhccccccccccCC----chhhhhhhhhhhhh
Confidence            47778888888888888888785 99999999998654      555678999999999999    99999999988999


Q ss_pred             CCcEEecccccccCCCCCCCCCcccccccccccCCCEEEecCCCcccccccccccccccccccccccccCCccCCCCCCc
Q 039475          117 HLRYLKLSAVEELSETCYCPSLKRLPQGRGKLINLRHLIFDKDYLAYMANGFERLTSLRTLSGFTVARVGGKYSSEACNL  196 (286)
Q Consensus       117 ~Lr~L~L~~~~~LP~~~~~~~l~~LP~~i~~L~~L~~L~l~~~~~~~lP~~i~~L~~L~~L~~~~~~~~~~~~~~~~~~~  196 (286)
                      .|+.|++++          +.+..+|..+..+..|+.|.+.+|.+...+..+.+++++..|.+..+...        ..+
T Consensus       187 ~L~~L~ls~----------N~i~~l~~~~~~~~~L~~l~~~~N~~~~~~~~~~~~~~l~~l~l~~n~~~--------~~~  248 (394)
T COG4886         187 NLNNLDLSG----------NKISDLPPEIELLSALEELDLSNNSIIELLSSLSNLKNLSGLELSNNKLE--------DLP  248 (394)
T ss_pred             hhhheeccC----------CccccCchhhhhhhhhhhhhhcCCcceecchhhhhcccccccccCCceee--------ecc
Confidence            999999997          77788887777777788888887766667777777777777764433321        113


Q ss_pred             ccccCcccccceeEEcccCCcccchhhhhhcCCCCCCceEEEEeCCCC
Q 039475          197 EGLRNLNHLRQFLRICGLGNLQMRLKINAHLEKKKNLVHLTLDFDKGE  244 (286)
Q Consensus       197 ~~l~~L~~L~~~L~i~~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~  244 (286)
                      ..++.+..++ .|.+.+...    ..+ ..+..+.+++.|+++.+...
T Consensus       249 ~~~~~l~~l~-~L~~s~n~i----~~i-~~~~~~~~l~~L~~s~n~~~  290 (394)
T COG4886         249 ESIGNLSNLE-TLDLSNNQI----SSI-SSLGSLTNLRELDLSGNSLS  290 (394)
T ss_pred             chhccccccc-eeccccccc----ccc-ccccccCccCEEeccCcccc
Confidence            4445555455 555543211    111 12777778888888776554

>PLN03150 hypothetical protein; Provisional

Probab=98.52  E-value=1.9e-07  Score=90.63  Aligned_cols=102  Identities=19%  Similarity=0.253  Sum_probs=77.2

Q ss_pred             CCcEEEeccCCCCCCCcCccchhhhcCCCCCcEEEeecccCCccCc-ccCccccCCCCCcEEecccccccCCCCCCCCCc
Q 039475           61 KLRSLSLFYDSKGQSAASPVLQGLFDQLTCLRALKIEELWYGDQTI-EIPKGLENLIHLRYLKLSAVEELSETCYCPSLK  139 (286)
Q Consensus        61 ~Lr~L~l~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~i~-~lP~~i~~L~~Lr~L~L~~~~~LP~~~~~~~l~  139 (286)
                      .++.|.+.++...+.     +|..+..+++|+.|+|++    |.+. .+|..++.+.+|++|+|++          +.+.
T Consensus       419 ~v~~L~L~~n~L~g~-----ip~~i~~L~~L~~L~Ls~----N~l~g~iP~~~~~l~~L~~LdLs~----------N~ls  479 (623)
T PLN03150        419 FIDGLGLDNQGLRGF-----IPNDISKLRHLQSINLSG----NSIRGNIPPSLGSITSLEVLDLSY----------NSFN  479 (623)
T ss_pred             EEEEEECCCCCcccc-----CCHHHhCCCCCCEEECCC----CcccCcCChHHhCCCCCCEEECCC----------CCCC
Confidence            366777877766543     777788888999999988    8876 7888888899999999885          4554


Q ss_pred             -ccccccccccCCCEEEecCCCcc-ccccccccc-cccccccccc
Q 039475          140 -RLPQGRGKLINLRHLIFDKDYLA-YMANGFERL-TSLRTLSGFT  181 (286)
Q Consensus       140 -~LP~~i~~L~~L~~L~l~~~~~~-~lP~~i~~L-~~L~~L~~~~  181 (286)
                       .+|..+++|++|++|++++|.+. .+|..++.+ .++..+.+..
T Consensus       480 g~iP~~l~~L~~L~~L~Ls~N~l~g~iP~~l~~~~~~~~~l~~~~  524 (623)
T PLN03150        480 GSIPESLGQLTSLRILNLNGNSLSGRVPAALGGRLLHRASFNFTD  524 (623)
T ss_pred             CCCchHHhcCCCCCEEECcCCcccccCChHHhhccccCceEEecC
Confidence             68888888999999999888877 778777654 3445554443

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=98.46  E-value=2.3e-07  Score=90.93  Aligned_cols=31  Identities=19%  Similarity=0.221  Sum_probs=13.8

Q ss_pred             CCCEEEecCCCccccccccccccccccccccccc
Q 039475          150 NLRHLIFDKDYLAYMANGFERLTSLRTLSGFTVA  183 (286)
Q Consensus       150 ~L~~L~l~~~~~~~lP~~i~~L~~L~~L~~~~~~  183 (286)
                      +|+.|++++|.+..+|...   .+|+.|++..+.
T Consensus       403 ~L~~LdLS~N~LssIP~l~---~~L~~L~Ls~Nq  433 (788)
T PRK15387        403 ELKELMVSGNRLTSLPMLP---SGLLSLSVYRNQ  433 (788)
T ss_pred             CCCEEEccCCcCCCCCcch---hhhhhhhhccCc
Confidence            3444455544444444322   234455554443

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=98.40  E-value=3.5e-07  Score=60.84  Aligned_cols=57  Identities=32%  Similarity=0.463  Sum_probs=33.8

Q ss_pred             CCcEEEeecccCCccCcccCc-cccCCCCCcEEecccccccCCCCCCCCCccccc-ccccccCCCEEEecCCC
Q 039475           90 CLRALKIEELWYGDQTIEIPK-GLENLIHLRYLKLSAVEELSETCYCPSLKRLPQ-GRGKLINLRHLIFDKDY  160 (286)
Q Consensus        90 ~Lr~L~L~~~~~~~~i~~lP~-~i~~L~~Lr~L~L~~~~~LP~~~~~~~l~~LP~-~i~~L~~L~~L~l~~~~  160 (286)
                      +|++|++++    |.+..+|. .+..+.+|++|++++          +.++.+|. .|..+++|++|++++|.
T Consensus         2 ~L~~L~l~~----n~l~~i~~~~f~~l~~L~~L~l~~----------N~l~~i~~~~f~~l~~L~~L~l~~N~   60 (61)
T PF13855_consen    2 NLESLDLSN----NKLTEIPPDSFSNLPNLETLDLSN----------NNLTSIPPDAFSNLPNLRYLDLSNNN   60 (61)
T ss_dssp             TESEEEETS----STESEECTTTTTTGTTESEEEETS----------SSESEEETTTTTTSTTESEEEETSSS
T ss_pred             cCcEEECCC----CCCCccCHHHHcCCCCCCEeEccC----------CccCccCHHHHcCCCCCCEEeCcCCc
Confidence            456666666    66666653 456666666666653          55555553 45666666666666654

...

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=98.31  E-value=3.1e-07  Score=89.44  Aligned_cols=134  Identities=24%  Similarity=0.157  Sum_probs=94.1

Q ss_pred             CCCCcEEEeecccCCcc-Cc-ccCcccc-CCCCCcEEecccccccCCCCCCCCC--cccccccccccCCCEEEecCCCcc
Q 039475           88 LTCLRALKIEELWYGDQ-TI-EIPKGLE-NLIHLRYLKLSAVEELSETCYCPSL--KRLPQGRGKLINLRHLIFDKDYLA  162 (286)
Q Consensus        88 l~~Lr~L~L~~~~~~~~-i~-~lP~~i~-~L~~Lr~L~L~~~~~LP~~~~~~~l--~~LP~~i~~L~~L~~L~l~~~~~~  162 (286)
                      -.+|+.||++|    .. +. .=|..+| .|+.||.|.+.+          ..+  .++-.-..++++|..||++++++.
T Consensus       121 r~nL~~LdI~G----~~~~s~~W~~kig~~LPsL~sL~i~~----------~~~~~~dF~~lc~sFpNL~sLDIS~TnI~  186 (699)
T KOG3665|consen  121 RQNLQHLDISG----SELFSNGWPKKIGTMLPSLRSLVISG----------RQFDNDDFSQLCASFPNLRSLDISGTNIS  186 (699)
T ss_pred             HHhhhhcCccc----cchhhccHHHHHhhhCcccceEEecC----------ceecchhHHHHhhccCccceeecCCCCcc
Confidence            35789999998    54 22 3344565 468999999875          111  122333467889999999999998


Q ss_pred             cccccccccccccccccccccccCCccCCCCCCcccccCcccccceeEEcccCCccc---chhhhhhcCCCCCCceEEEE
Q 039475          163 YMANGFERLTSLRTLSGFTVARVGGKYSSEACNLEGLRNLNHLRQFLRICGLGNLQM---RLKINAHLEKKKNLVHLTLD  239 (286)
Q Consensus       163 ~lP~~i~~L~~L~~L~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~~L~i~~l~~~~~---~~~~~~~l~~l~~L~~L~L~  239 (286)
                      .+ .||++|++||+|.+.+....      ....+.++-+|++|+ .|+|+.-.....   .....+.-..+++|+.|+.+
T Consensus       187 nl-~GIS~LknLq~L~mrnLe~e------~~~~l~~LF~L~~L~-vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcS  258 (699)
T KOG3665|consen  187 NL-SGISRLKNLQVLSMRNLEFE------SYQDLIDLFNLKKLR-VLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCS  258 (699)
T ss_pred             Cc-HHHhccccHHHHhccCCCCC------chhhHHHHhcccCCC-eeeccccccccchHHHHHHHHhcccCccccEEecC
Confidence            88 78999999999998877655      356777888899888 788875433322   22223334458899999998


Q ss_pred             eCCC
Q 039475          240 FDKG  243 (286)
Q Consensus       240 ~~~~  243 (286)
                      ....
T Consensus       259 gTdi  262 (699)
T KOG3665|consen  259 GTDI  262 (699)
T ss_pred             Ccch
Confidence            4443

>PLN03150 hypothetical protein; Provisional

Probab=98.30  E-value=2.3e-06  Score=83.07  Aligned_cols=104  Identities=24%  Similarity=0.279  Sum_probs=86.5

Q ss_pred             ceEEEeecCCC-CCCchhhhcCCCCcEEEeccCCCCCCCcCccchhhhcCCCCCcEEEeecccCCccCc-ccCccccCCC
Q 039475           39 LRHLTLMLGLP-TKFPVSIFDAKKLRSLSLFYDSKGQSAASPVLQGLFDQLTCLRALKIEELWYGDQTI-EIPKGLENLI  116 (286)
Q Consensus        39 ~r~ls~~~~~~-~~~~~~~~~l~~Lr~L~l~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~i~-~lP~~i~~L~  116 (286)
                      ++.|.+..+.. ..+|..+..+++|+.|++++|...+.     +|..+..++.|++|+|++    |.+. .+|+.+++|.
T Consensus       420 v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~-----iP~~~~~l~~L~~LdLs~----N~lsg~iP~~l~~L~  490 (623)
T PLN03150        420 IDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGN-----IPPSLGSITSLEVLDLSY----NSFNGSIPESLGQLT  490 (623)
T ss_pred             EEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCc-----CChHHhCCCCCCEEECCC----CCCCCCCchHHhcCC
Confidence            66777777766 46788999999999999999987654     888899999999999999    9976 7899999999


Q ss_pred             CCcEEecccccccCCCCCCCCCc-ccccccccc-cCCCEEEecCCCc
Q 039475          117 HLRYLKLSAVEELSETCYCPSLK-RLPQGRGKL-INLRHLIFDKDYL  161 (286)
Q Consensus       117 ~Lr~L~L~~~~~LP~~~~~~~l~-~LP~~i~~L-~~L~~L~l~~~~~  161 (286)
                      +|++|+|++          +.+. .+|..++.+ .++..+++.+|..
T Consensus       491 ~L~~L~Ls~----------N~l~g~iP~~l~~~~~~~~~l~~~~N~~  527 (623)
T PLN03150        491 SLRILNLNG----------NSLSGRVPAALGGRLLHRASFNFTDNAG  527 (623)
T ss_pred             CCCEEECcC----------CcccccCChHHhhccccCceEEecCCcc
Confidence            999999985          4454 788888664 4677888887743

>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]

Probab=98.29  E-value=2.1e-07  Score=82.63  Aligned_cols=121  Identities=20%  Similarity=0.289  Sum_probs=87.9

Q ss_pred             CCCchhhhcCCCCcEEEeccCCCCCCCcCccchhhhcCCCCCcEEEeecccCCccCccc-CccccCCCCCcEEeccc---
Q 039475           50 TKFPVSIFDAKKLRSLSLFYDSKGQSAASPVLQGLFDQLTCLRALKIEELWYGDQTIEI-PKGLENLIHLRYLKLSA---  125 (286)
Q Consensus        50 ~~~~~~~~~l~~Lr~L~l~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~i~~l-P~~i~~L~~Lr~L~L~~---  125 (286)
                      .++|..+  -.....+.+.-|.....     .+.+|+.++.||.|||++    |.|..+ |++|..|..|-.|-+-+   
T Consensus        59 ~eVP~~L--P~~tveirLdqN~I~~i-----P~~aF~~l~~LRrLdLS~----N~Is~I~p~AF~GL~~l~~Lvlyg~Nk  127 (498)
T KOG4237|consen   59 TEVPANL--PPETVEIRLDQNQISSI-----PPGAFKTLHRLRRLDLSK----NNISFIAPDAFKGLASLLSLVLYGNNK  127 (498)
T ss_pred             ccCcccC--CCcceEEEeccCCcccC-----Chhhccchhhhceecccc----cchhhcChHhhhhhHhhhHHHhhcCCc
Confidence            3455443  23345667777765432     678999999999999999    998854 78999998876665544   


Q ss_pred             ccccCCC-C-CCC----------CCccc-ccccccccCCCEEEecCCCccccccc-cccccccccccccc
Q 039475          126 VEELSET-C-YCP----------SLKRL-PQGRGKLINLRHLIFDKDYLAYMANG-FERLTSLRTLSGFT  181 (286)
Q Consensus       126 ~~~LP~~-~-~~~----------~l~~L-P~~i~~L~~L~~L~l~~~~~~~lP~~-i~~L~~L~~L~~~~  181 (286)
                      |+.+|.. + +..          .+.-+ ...++.|++|..|.+.+|.+..++.+ |..+.+++++++-.
T Consensus       128 I~~l~k~~F~gL~slqrLllNan~i~Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~  197 (498)
T KOG4237|consen  128 ITDLPKGAFGGLSSLQRLLLNANHINCIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQ  197 (498)
T ss_pred             hhhhhhhHhhhHHHHHHHhcChhhhcchhHHHHHHhhhcchhcccchhhhhhccccccchhccchHhhhc
Confidence            8899988 5 222          22222 35678889999999999988888875 88888888886543

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]

Probab=98.18  E-value=3.7e-07  Score=78.59  Aligned_cols=114  Identities=22%  Similarity=0.213  Sum_probs=66.5

Q ss_pred             cCCCCcEEEeccCCCCCCCcCccchhhhcCCCCCcEEEeecccCCccCcccCccccCCCCCcEEeccc--ccccCCC-CC
Q 039475           58 DAKKLRSLSLFYDSKGQSAASPVLQGLFDQLTCLRALKIEELWYGDQTIEIPKGLENLIHLRYLKLSA--VEELSET-CY  134 (286)
Q Consensus        58 ~l~~Lr~L~l~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~i~~lP~~i~~L~~Lr~L~L~~--~~~LP~~-~~  134 (286)
                      -.+.|..+++++|....      +.....-.+.+|+|+++.    |.+..+-. +..|.+|+.|||++  +.++-.. ..
T Consensus       282 TWq~LtelDLS~N~I~~------iDESvKL~Pkir~L~lS~----N~i~~v~n-La~L~~L~~LDLS~N~Ls~~~Gwh~K  350 (490)
T KOG1259|consen  282 TWQELTELDLSGNLITQ------IDESVKLAPKLRRLILSQ----NRIRTVQN-LAELPQLQLLDLSGNLLAECVGWHLK  350 (490)
T ss_pred             hHhhhhhccccccchhh------hhhhhhhccceeEEeccc----cceeeehh-hhhcccceEeecccchhHhhhhhHhh
Confidence            34566777777776433      444455666777777777    66665543 66677777777776  2222222 11


Q ss_pred             C----------CCCcccccccccccCCCEEEecCCCccccc--cccccccccccccccccc
Q 039475          135 C----------PSLKRLPQGRGKLINLRHLIFDKDYLAYMA--NGFERLTSLRTLSGFTVA  183 (286)
Q Consensus       135 ~----------~~l~~LP~~i~~L~~L~~L~l~~~~~~~lP--~~i~~L~~L~~L~~~~~~  183 (286)
                      .          +.++.| +++++|.+|..||+++|++..+-  .+||+|+.|+++.+.++.
T Consensus       351 LGNIKtL~La~N~iE~L-SGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NP  410 (490)
T KOG1259|consen  351 LGNIKTLKLAQNKIETL-SGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNP  410 (490)
T ss_pred             hcCEeeeehhhhhHhhh-hhhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCC
Confidence            1          222222 35667777777777777666543  457777777776655443

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]

Probab=98.13  E-value=6.8e-07  Score=80.30  Aligned_cols=82  Identities=20%  Similarity=0.111  Sum_probs=51.3

Q ss_pred             CCceEEEeecCCCCCCc--hhhhcCCCCcEEEeccCCCCCCCcCccchhhhcCCCCCcEEEeecccCCccCcccCccc--
Q 039475           37 EKLRHLTLMLGLPTKFP--VSIFDAKKLRSLSLFYDSKGQSAASPVLQGLFDQLTCLRALKIEELWYGDQTIEIPKGL--  112 (286)
Q Consensus        37 ~~~r~ls~~~~~~~~~~--~~~~~l~~Lr~L~l~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~i~~lP~~i--  112 (286)
                      ++.|.+++........+  .-...++++|.|+++.|-+..-..   +..+...|++|+.|.|+.    |.+...-++.  
T Consensus       121 kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~---v~~i~eqLp~Le~LNls~----Nrl~~~~~s~~~  193 (505)
T KOG3207|consen  121 KKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFP---VLKIAEQLPSLENLNLSS----NRLSNFISSNTT  193 (505)
T ss_pred             HhhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHH---HHHHHHhcccchhccccc----ccccCCccccch
Confidence            45677777766554333  245567888888888876432211   445567788888888888    6654333222  


Q ss_pred             cCCCCCcEEeccc
Q 039475          113 ENLIHLRYLKLSA  125 (286)
Q Consensus       113 ~~L~~Lr~L~L~~  125 (286)
                      ..+.||+.|.|+.
T Consensus       194 ~~l~~lK~L~l~~  206 (505)
T KOG3207|consen  194 LLLSHLKQLVLNS  206 (505)
T ss_pred             hhhhhhheEEecc
Confidence            3567777777775

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]

Probab=98.12  E-value=4e-07  Score=78.40  Aligned_cols=132  Identities=23%  Similarity=0.207  Sum_probs=99.5

Q ss_pred             hcCCCCCcEEEeecccCCccCcccCccccCCCCCcEEecccccccCCCCCCCCCcccccccccccCCCEEEecCCCcccc
Q 039475           85 FDQLTCLRALKIEELWYGDQTIEIPKGLENLIHLRYLKLSAVEELSETCYCPSLKRLPQGRGKLINLRHLIFDKDYLAYM  164 (286)
Q Consensus        85 ~~~l~~Lr~L~L~~~~~~~~i~~lP~~i~~L~~Lr~L~L~~~~~LP~~~~~~~l~~LP~~i~~L~~L~~L~l~~~~~~~l  164 (286)
                      ....+.|..|||++    |.|+.+-++..-++.+|.|+++.          +.+..+-. +..|.+|++||+++|.+.++
T Consensus       280 ~dTWq~LtelDLS~----N~I~~iDESvKL~Pkir~L~lS~----------N~i~~v~n-La~L~~L~~LDLS~N~Ls~~  344 (490)
T KOG1259|consen  280 ADTWQELTELDLSG----NLITQIDESVKLAPKLRRLILSQ----------NRIRTVQN-LAELPQLQLLDLSGNLLAEC  344 (490)
T ss_pred             cchHhhhhhccccc----cchhhhhhhhhhccceeEEeccc----------cceeeehh-hhhcccceEeecccchhHhh
Confidence            35678899999999    99999999999999999999996          76776654 78899999999999988888


Q ss_pred             cccccccccccccccccccccCCccCCCCCCcccccCcccccceeEEcccCCccc-chhhhhhcCCCCCCceEEEEeCCC
Q 039475          165 ANGFERLTSLRTLSGFTVARVGGKYSSEACNLEGLRNLNHLRQFLRICGLGNLQM-RLKINAHLEKKKNLVHLTLDFDKG  243 (286)
Q Consensus       165 P~~i~~L~~L~~L~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~~L~i~~l~~~~~-~~~~~~~l~~l~~L~~L~L~~~~~  243 (286)
                      -.+-.+|.+.++|.+..+.         ...+..+++|-.|- .|.+.+   ..- .-.....+++++.|+.|.|..|..
T Consensus       345 ~Gwh~KLGNIKtL~La~N~---------iE~LSGL~KLYSLv-nLDl~~---N~Ie~ldeV~~IG~LPCLE~l~L~~NPl  411 (490)
T KOG1259|consen  345 VGWHLKLGNIKTLKLAQNK---------IETLSGLRKLYSLV-NLDLSS---NQIEELDEVNHIGNLPCLETLRLTGNPL  411 (490)
T ss_pred             hhhHhhhcCEeeeehhhhh---------HhhhhhhHhhhhhe-eccccc---cchhhHHHhcccccccHHHHHhhcCCCc
Confidence            6667788888888876553         23444555555444 344432   221 222346789999999999999977


Q ss_pred             C
Q 039475          244 E  244 (286)
Q Consensus       244 ~  244 (286)
                      .
T Consensus       412 ~  412 (490)
T KOG1259|consen  412 A  412 (490)
T ss_pred             c
Confidence            5

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=98.10  E-value=2.3e-06  Score=56.84  Aligned_cols=57  Identities=32%  Similarity=0.455  Sum_probs=47.0

Q ss_pred             CCCcEEEeccCCCCCCCcCccchhhhcCCCCCcEEEeecccCCccCcccCc-cccCCCCCcEEeccc
Q 039475           60 KKLRSLSLFYDSKGQSAASPVLQGLFDQLTCLRALKIEELWYGDQTIEIPK-GLENLIHLRYLKLSA  125 (286)
Q Consensus        60 ~~Lr~L~l~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~i~~lP~-~i~~L~~Lr~L~L~~  125 (286)
                      ++|++|++.+|.....     .+..|.++++|++|++++    |.+..+|. .+.++++|++|++++
T Consensus         1 p~L~~L~l~~n~l~~i-----~~~~f~~l~~L~~L~l~~----N~l~~i~~~~f~~l~~L~~L~l~~   58 (61)
T PF13855_consen    1 PNLESLDLSNNKLTEI-----PPDSFSNLPNLETLDLSN----NNLTSIPPDAFSNLPNLRYLDLSN   58 (61)
T ss_dssp             TTESEEEETSSTESEE-----CTTTTTTGTTESEEEETS----SSESEEETTTTTTSTTESEEEETS
T ss_pred             CcCcEEECCCCCCCcc-----CHHHHcCCCCCCEeEccC----CccCccCHHHHcCCCCCCEEeCcC
Confidence            5788999998865431     556889999999999999    99888765 779999999999985

...

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=98.00  E-value=8.8e-06  Score=50.22  Aligned_cols=32  Identities=34%  Similarity=0.524  Sum_probs=14.8

Q ss_pred             CCcEEEeecccCCccCcccCccccCCCCCcEEeccc
Q 039475           90 CLRALKIEELWYGDQTIEIPKGLENLIHLRYLKLSA  125 (286)
Q Consensus        90 ~Lr~L~L~~~~~~~~i~~lP~~i~~L~~Lr~L~L~~  125 (286)
                      +|++|++++    +.+..+|..|++|++|++|++++
T Consensus         2 ~L~~L~l~~----N~i~~l~~~l~~l~~L~~L~l~~   33 (44)
T PF12799_consen    2 NLEELDLSN----NQITDLPPELSNLPNLETLNLSN   33 (44)
T ss_dssp             T-SEEEETS----SS-SSHGGHGTTCTTSSEEEETS
T ss_pred             cceEEEccC----CCCcccCchHhCCCCCCEEEecC
Confidence            345555555    44544444445555555555443

...

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=97.92  E-value=9.3e-06  Score=50.11  Aligned_cols=39  Identities=26%  Similarity=0.364  Sum_probs=24.7

Q ss_pred             CCcEEecccccccCCCCCCCCCcccccccccccCCCEEEecCCCccccc
Q 039475          117 HLRYLKLSAVEELSETCYCPSLKRLPQGRGKLINLRHLIFDKDYLAYMA  165 (286)
Q Consensus       117 ~Lr~L~L~~~~~LP~~~~~~~l~~LP~~i~~L~~L~~L~l~~~~~~~lP  165 (286)
                      +|++|++++          +.++.+|..+++|++|++|++++|.+..+|
T Consensus         2 ~L~~L~l~~----------N~i~~l~~~l~~l~~L~~L~l~~N~i~~i~   40 (44)
T PF12799_consen    2 NLEELDLSN----------NQITDLPPELSNLPNLETLNLSNNPISDIS   40 (44)
T ss_dssp             T-SEEEETS----------SS-SSHGGHGTTCTTSSEEEETSSCCSBEG
T ss_pred             cceEEEccC----------CCCcccCchHhCCCCCCEEEecCCCCCCCc
Confidence            566777764          566667666777777777777776666554

...

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=97.82  E-value=8.9e-06  Score=79.39  Aligned_cols=106  Identities=22%  Similarity=0.246  Sum_probs=76.6

Q ss_pred             CCceEEEeecCCC--CCCchhh-hcCCCCcEEEeccCCCCCCCcCccchhhhcCCCCCcEEEeecccCCccCcccCcccc
Q 039475           37 EKLRHLTLMLGLP--TKFPVSI-FDAKKLRSLSLFYDSKGQSAASPVLQGLFDQLTCLRALKIEELWYGDQTIEIPKGLE  113 (286)
Q Consensus        37 ~~~r~ls~~~~~~--~~~~~~~-~~l~~Lr~L~l~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~i~~lP~~i~  113 (286)
                      .+.|++.+.+...  ..-+..+ ..+|.||+|.+.|-......    +...+.+|++|+.||+++    +++..+ ..|+
T Consensus       122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~d----F~~lc~sFpNL~sLDIS~----TnI~nl-~GIS  192 (699)
T KOG3665|consen  122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDD----FSQLCASFPNLRSLDISG----TNISNL-SGIS  192 (699)
T ss_pred             HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchh----HHHHhhccCccceeecCC----CCccCc-HHHh
Confidence            4577887766443  1112233 46899999999997654322    556678999999999999    888887 7899


Q ss_pred             CCCCCcEEecccccccCCCCCCCCCcccc--cccccccCCCEEEecCCCc
Q 039475          114 NLIHLRYLKLSAVEELSETCYCPSLKRLP--QGRGKLINLRHLIFDKDYL  161 (286)
Q Consensus       114 ~L~~Lr~L~L~~~~~LP~~~~~~~l~~LP--~~i~~L~~L~~L~l~~~~~  161 (286)
                      +|++|+.|.+++          -.+..-.  ..+.+|++|++||++....
T Consensus       193 ~LknLq~L~mrn----------Le~e~~~~l~~LF~L~~L~vLDIS~~~~  232 (699)
T KOG3665|consen  193 RLKNLQVLSMRN----------LEFESYQDLIDLFNLKKLRVLDISRDKN  232 (699)
T ss_pred             ccccHHHHhccC----------CCCCchhhHHHHhcccCCCeeecccccc
Confidence            999999999975          2232222  2567899999999987433

>PRK15386 type III secretion protein GogB; Provisional

Probab=97.63  E-value=0.00013  Score=66.51  Aligned_cols=28  Identities=14%  Similarity=0.171  Sum_probs=13.6

Q ss_pred             CCCEEEecCCCccccccccccccccccccc
Q 039475          150 NLRHLIFDKDYLAYMANGFERLTSLRTLSG  179 (286)
Q Consensus       150 ~L~~L~l~~~~~~~lP~~i~~L~~L~~L~~  179 (286)
                      +|++|++.++....+|.++.  .+|+.|.+
T Consensus       157 SLk~L~Is~c~~i~LP~~LP--~SLk~L~l  184 (426)
T PRK15386        157 SLKTLSLTGCSNIILPEKLP--ESLQSITL  184 (426)
T ss_pred             cccEEEecCCCcccCccccc--ccCcEEEe
Confidence            55666665554444443333  24444443

>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]

Probab=97.55  E-value=1.3e-05  Score=74.28  Aligned_cols=105  Identities=23%  Similarity=0.328  Sum_probs=55.6

Q ss_pred             hhcCCCCcEEEeccCCCCCCCcCccchhhhcCCCCCcEEEeecccCCccCcccCccccCCCCCcEEecccccccCCCCCC
Q 039475           56 IFDAKKLRSLSLFYDSKGQSAASPVLQGLFDQLTCLRALKIEELWYGDQTIEIPKGLENLIHLRYLKLSAVEELSETCYC  135 (286)
Q Consensus        56 ~~~l~~Lr~L~l~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~i~~lP~~i~~L~~Lr~L~L~~~~~LP~~~~~  135 (286)
                      +..+++|..|++.++....      +...+..+.+|++|++++    +.|..+. .+..+..|+.|++++          
T Consensus        91 l~~~~~l~~l~l~~n~i~~------i~~~l~~~~~L~~L~ls~----N~I~~i~-~l~~l~~L~~L~l~~----------  149 (414)
T KOG0531|consen   91 LSKLKSLEALDLYDNKIEK------IENLLSSLVNLQVLDLSF----NKITKLE-GLSTLTLLKELNLSG----------  149 (414)
T ss_pred             cccccceeeeeccccchhh------cccchhhhhcchheeccc----ccccccc-chhhccchhhheecc----------
Confidence            4455556666666655432      222244566666666666    6655544 455555566666654          


Q ss_pred             CCCcccccccccccCCCEEEecCCCccccccc-ccccccccccccccc
Q 039475          136 PSLKRLPQGRGKLINLRHLIFDKDYLAYMANG-FERLTSLRTLSGFTV  182 (286)
Q Consensus       136 ~~l~~LP~~i~~L~~L~~L~l~~~~~~~lP~~-i~~L~~L~~L~~~~~  182 (286)
                      +.+..++ ++..+++|+.+++++|.+..+... ...+.+++.+.+..+
T Consensus       150 N~i~~~~-~~~~l~~L~~l~l~~n~i~~ie~~~~~~~~~l~~l~l~~n  196 (414)
T KOG0531|consen  150 NLISDIS-GLESLKSLKLLDLSYNRIVDIENDELSELISLEELDLGGN  196 (414)
T ss_pred             Ccchhcc-CCccchhhhcccCCcchhhhhhhhhhhhccchHHHhccCC
Confidence            4344433 334466666666666666655432 355555555554433

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]

Probab=97.54  E-value=9.4e-06  Score=73.16  Aligned_cols=190  Identities=17%  Similarity=0.105  Sum_probs=112.5

Q ss_pred             cccCCceEEEeecCCCCC---CchhhhcCCCCcEEEeccCCCCCCCcCccchhhhcCCCCCcEEEeecccCCccCc--cc
Q 039475           34 SCQEKLRHLTLMLGLPTK---FPVSIFDAKKLRSLSLFYDSKGQSAASPVLQGLFDQLTCLRALKIEELWYGDQTI--EI  108 (286)
Q Consensus        34 ~~~~~~r~ls~~~~~~~~---~~~~~~~l~~Lr~L~l~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~i~--~l  108 (286)
                      .....+|.|.+..+-+..   +......+++|+.|.++.|....... +..   -..+.+|+.|.|++    |.+.  ++
T Consensus       143 k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~-s~~---~~~l~~lK~L~l~~----CGls~k~V  214 (505)
T KOG3207|consen  143 KILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFIS-SNT---TLLLSHLKQLVLNS----CGLSWKDV  214 (505)
T ss_pred             hhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCcc-ccc---hhhhhhhheEEecc----CCCCHHHH
Confidence            345778999888776532   33445689999999999998654321 111   13678899999999    7765  33


Q ss_pred             CccccCCCCCcEEecccccccCCCCCCCCCcccccccccccCCCEEEecCCCcccccc--cccccccccccccccccccC
Q 039475          109 PKGLENLIHLRYLKLSAVEELSETCYCPSLKRLPQGRGKLINLRHLIFDKDYLAYMAN--GFERLTSLRTLSGFTVARVG  186 (286)
Q Consensus       109 P~~i~~L~~Lr~L~L~~~~~LP~~~~~~~l~~LP~~i~~L~~L~~L~l~~~~~~~lP~--~i~~L~~L~~L~~~~~~~~~  186 (286)
                      -...-.++.|..|+|..         ...+..--....-++.|+.|++++|.+...++  .++.++.|..|.+..++..+
T Consensus       215 ~~~~~~fPsl~~L~L~~---------N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~L~~Lnls~tgi~s  285 (505)
T KOG3207|consen  215 QWILLTFPSLEVLYLEA---------NEIILIKATSTKILQTLQELDLSNNNLIDFDQGYKVGTLPGLNQLNLSSTGIAS  285 (505)
T ss_pred             HHHHHhCCcHHHhhhhc---------ccccceecchhhhhhHHhhccccCCcccccccccccccccchhhhhccccCcch
Confidence            33445667888888875         11222112223446678888888888877774  37788888877766655431


Q ss_pred             CccCCCCCCcccccCcccccceeEEcccCCcccchhhhhhcCCCCCCceEEEEeCCCC
Q 039475          187 GKYSSEACNLEGLRNLNHLRQFLRICGLGNLQMRLKINAHLEKKKNLVHLTLDFDKGE  244 (286)
Q Consensus       187 ~~~~~~~~~~~~l~~L~~L~~~L~i~~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~  244 (286)
                      ... -...+......+.+|+ .|.+....-.  .-.....+..+.+|+.|.+.+|...
T Consensus       286 i~~-~d~~s~~kt~~f~kL~-~L~i~~N~I~--~w~sl~~l~~l~nlk~l~~~~n~ln  339 (505)
T KOG3207|consen  286 IAE-PDVESLDKTHTFPKLE-YLNISENNIR--DWRSLNHLRTLENLKHLRITLNYLN  339 (505)
T ss_pred             hcC-CCccchhhhcccccce-eeecccCccc--cccccchhhccchhhhhhccccccc
Confidence            000 0011111233445555 5666533211  1122345566677777777777654

>PRK15386 type III secretion protein GogB; Provisional

Probab=97.31  E-value=0.00067  Score=61.95  Aligned_cols=86  Identities=22%  Similarity=0.304  Sum_probs=59.2

Q ss_pred             hhcCCCCcEEEeccCCCCCCCcCccchhhhcCCCCCcEEEeecccCCcc-CcccCccccCCCCCcEEecccccccCCCCC
Q 039475           56 IFDAKKLRSLSLFYDSKGQSAASPVLQGLFDQLTCLRALKIEELWYGDQ-TIEIPKGLENLIHLRYLKLSAVEELSETCY  134 (286)
Q Consensus        56 ~~~l~~Lr~L~l~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~-i~~lP~~i~~L~~Lr~L~L~~~~~LP~~~~  134 (286)
                      +..+++++.|++.++....      +|.   -...|+.|.+++    +. +..+|+.+.  .+|++|++++         
T Consensus        48 ~~~~~~l~~L~Is~c~L~s------LP~---LP~sLtsL~Lsn----c~nLtsLP~~LP--~nLe~L~Ls~---------  103 (426)
T PRK15386         48 IEEARASGRLYIKDCDIES------LPV---LPNELTEITIEN----CNNLTTLPGSIP--EGLEKLTVCH---------  103 (426)
T ss_pred             HHHhcCCCEEEeCCCCCcc------cCC---CCCCCcEEEccC----CCCcccCCchhh--hhhhheEccC---------
Confidence            4557889999999885432      452   223699999988    54 778887663  5899999985         


Q ss_pred             CCCCcccccccccccCCCEEEecCCC---ccccccccccc
Q 039475          135 CPSLKRLPQGRGKLINLRHLIFDKDY---LAYMANGFERL  171 (286)
Q Consensus       135 ~~~l~~LP~~i~~L~~L~~L~l~~~~---~~~lP~~i~~L  171 (286)
                      |..+..+|.+      |++|++..+.   +..+|.++..|
T Consensus       104 Cs~L~sLP~s------Le~L~L~~n~~~~L~~LPssLk~L  137 (426)
T PRK15386        104 CPEISGLPES------VRSLEIKGSATDSIKNVPNGLTSL  137 (426)
T ss_pred             cccccccccc------cceEEeCCCCCcccccCcchHhhe
Confidence            7778888864      5556665543   45677655444

>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]

Probab=97.26  E-value=4e-05  Score=70.94  Aligned_cols=105  Identities=25%  Similarity=0.341  Sum_probs=78.5

Q ss_pred             CCCCcEEEeccCCCCCCCcCccchhhhcCCCCCcEEEeecccCCccCcccCccccCCCCCcEEecccccccCCCCCCCCC
Q 039475           59 AKKLRSLSLFYDSKGQSAASPVLQGLFDQLTCLRALKIEELWYGDQTIEIPKGLENLIHLRYLKLSAVEELSETCYCPSL  138 (286)
Q Consensus        59 l~~Lr~L~l~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~i~~lP~~i~~L~~Lr~L~L~~~~~LP~~~~~~~l  138 (286)
                      +..+..+.+..+....      +-..+..++.|.+|++.+    +.+..+...+..+.+|++|++++          +.+
T Consensus        71 l~~l~~l~l~~n~i~~------~~~~l~~~~~l~~l~l~~----n~i~~i~~~l~~~~~L~~L~ls~----------N~I  130 (414)
T KOG0531|consen   71 LTSLKELNLRQNLIAK------ILNHLSKLKSLEALDLYD----NKIEKIENLLSSLVNLQVLDLSF----------NKI  130 (414)
T ss_pred             hHhHHhhccchhhhhh------hhcccccccceeeeeccc----cchhhcccchhhhhcchheeccc----------ccc
Confidence            4455555554444322      123357889999999999    99998886689999999999986          666


Q ss_pred             cccccccccccCCCEEEecCCCccccccccccccccccccccccccc
Q 039475          139 KRLPQGRGKLINLRHLIFDKDYLAYMANGFERLTSLRTLSGFTVARV  185 (286)
Q Consensus       139 ~~LP~~i~~L~~L~~L~l~~~~~~~lP~~i~~L~~L~~L~~~~~~~~  185 (286)
                      +.+. ++..++.|+.|++.+|.+..+ .++..+++|+.+++..+...
T Consensus       131 ~~i~-~l~~l~~L~~L~l~~N~i~~~-~~~~~l~~L~~l~l~~n~i~  175 (414)
T KOG0531|consen  131 TKLE-GLSTLTLLKELNLSGNLISDI-SGLESLKSLKLLDLSYNRIV  175 (414)
T ss_pred             cccc-chhhccchhhheeccCcchhc-cCCccchhhhcccCCcchhh
Confidence            6665 566777799999999998887 46777888988887766543

>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]

Probab=97.22  E-value=0.00015  Score=63.87  Aligned_cols=198  Identities=17%  Similarity=0.084  Sum_probs=98.5

Q ss_pred             CCceEEEeecCCCC-----CCchhhhcCCCCcEEEeccCCCCCCCc-----CccchhhhcCCCCCcEEEeecccCCccCc
Q 039475           37 EKLRHLTLMLGLPT-----KFPVSIFDAKKLRSLSLFYDSKGQSAA-----SPVLQGLFDQLTCLRALKIEELWYGDQTI  106 (286)
Q Consensus        37 ~~~r~ls~~~~~~~-----~~~~~~~~l~~Lr~L~l~~~~~~~~~~-----~~~~~~~~~~l~~Lr~L~L~~~~~~~~i~  106 (286)
                      ..+..+.+..+.+.     .+...+.+.+.||...+++-.......     -.++...+-..++|++|+|+.    |.+.
T Consensus        30 ~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSD----NA~G  105 (382)
T KOG1909|consen   30 DSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLDLSD----NAFG  105 (382)
T ss_pred             CceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEeeccc----cccC
Confidence            34566666665552     233445556666666666544321100     000122334455677777777    4432


Q ss_pred             -----ccCccccCCCCCcEEeccc--ccccCCC-CCCCCCccc--ccccccccCCCEEEecCCCccccc-----cccccc
Q 039475          107 -----EIPKGLENLIHLRYLKLSA--VEELSET-CYCPSLKRL--PQGRGKLINLRHLIFDKDYLAYMA-----NGFERL  171 (286)
Q Consensus       107 -----~lP~~i~~L~~Lr~L~L~~--~~~LP~~-~~~~~l~~L--P~~i~~L~~L~~L~l~~~~~~~lP-----~~i~~L  171 (286)
                           .+-+-|..+..|+.|.|.+  ++..-.. -+ .-+.++  -.-++.=.+||++..+.|.+..-+     ..+...
T Consensus       106 ~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~-~al~~l~~~kk~~~~~~Lrv~i~~rNrlen~ga~~~A~~~~~~  184 (382)
T KOG1909|consen  106 PKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLG-RALFELAVNKKAASKPKLRVFICGRNRLENGGATALAEAFQSH  184 (382)
T ss_pred             ccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHH-HHHHHHHHHhccCCCcceEEEEeeccccccccHHHHHHHHHhc
Confidence                 2222334556666666654  1100000 00 000000  112234457888888777665433     235566


Q ss_pred             ccccccccccccccCCccCCCC-CCcccccCcccccceeEEcccCCccc-chhhhhhcCCCCCCceEEEEeCCCC
Q 039475          172 TSLRTLSGFTVARVGGKYSSEA-CNLEGLRNLNHLRQFLRICGLGNLQM-RLKINAHLEKKKNLVHLTLDFDKGE  244 (286)
Q Consensus       172 ~~L~~L~~~~~~~~~~~~~~~~-~~~~~l~~L~~L~~~L~i~~l~~~~~-~~~~~~~l~~l~~L~~L~L~~~~~~  244 (286)
                      +.|+.+.+..++...    +.. .....+...++|+ .|.+.+.--... ..++...+..+++|+.|+++.....
T Consensus       185 ~~leevr~~qN~I~~----eG~~al~eal~~~~~Le-vLdl~DNtft~egs~~LakaL~s~~~L~El~l~dcll~  254 (382)
T KOG1909|consen  185 PTLEEVRLSQNGIRP----EGVTALAEALEHCPHLE-VLDLRDNTFTLEGSVALAKALSSWPHLRELNLGDCLLE  254 (382)
T ss_pred             cccceEEEecccccC----chhHHHHHHHHhCCcce-eeecccchhhhHHHHHHHHHhcccchheeecccccccc
Confidence            677777666655441    001 1123456666666 666665433222 4556667777888888888766554

>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]

Probab=97.16  E-value=1.4e-05  Score=76.24  Aligned_cols=108  Identities=27%  Similarity=0.309  Sum_probs=67.1

Q ss_pred             hhhcCCCCCcEEEeecccCCccCcccCccccCCCCCcEEecccccccCCCCCCCCCccccc-ccccccCCCEEEecCCCc
Q 039475           83 GLFDQLTCLRALKIEELWYGDQTIEIPKGLENLIHLRYLKLSAVEELSETCYCPSLKRLPQ-GRGKLINLRHLIFDKDYL  161 (286)
Q Consensus        83 ~~~~~l~~Lr~L~L~~~~~~~~i~~lP~~i~~L~~Lr~L~L~~~~~LP~~~~~~~l~~LP~-~i~~L~~L~~L~l~~~~~  161 (286)
                      ..+.-++.|+.|+|+.    |.+..+- .+..|.+|+.|||++          +.+..+|. +.... .|+.|.+++|.+
T Consensus       181 ~SLqll~ale~LnLsh----Nk~~~v~-~Lr~l~~LkhLDlsy----------N~L~~vp~l~~~gc-~L~~L~lrnN~l  244 (1096)
T KOG1859|consen  181 ESLQLLPALESLNLSH----NKFTKVD-NLRRLPKLKHLDLSY----------NCLRHVPQLSMVGC-KLQLLNLRNNAL  244 (1096)
T ss_pred             HHHHHHHHhhhhccch----hhhhhhH-HHHhccccccccccc----------chhccccccchhhh-hheeeeecccHH
Confidence            3445567788888888    7777655 777788888888876          55665553 12222 377777777766


Q ss_pred             ccccccccccccccccccccccccCCccCCCCCCcccccCcccccceeEEccc
Q 039475          162 AYMANGFERLTSLRTLSGFTVARVGGKYSSEACNLEGLRNLNHLRQFLRICGL  214 (286)
Q Consensus       162 ~~lP~~i~~L~~L~~L~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~~L~i~~l  214 (286)
                      +.+ .+|.+|++|+.|++..+-..      ....+..+..|..|+ .|.+.+.
T Consensus       245 ~tL-~gie~LksL~~LDlsyNll~------~hseL~pLwsLs~L~-~L~LeGN  289 (1096)
T KOG1859|consen  245 TTL-RGIENLKSLYGLDLSYNLLS------EHSELEPLWSLSSLI-VLWLEGN  289 (1096)
T ss_pred             Hhh-hhHHhhhhhhccchhHhhhh------cchhhhHHHHHHHHH-HHhhcCC
Confidence            666 56777777777777665443      133344444445454 4555443

>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]

Probab=97.04  E-value=0.0001  Score=56.75  Aligned_cols=93  Identities=18%  Similarity=0.187  Sum_probs=65.4

Q ss_pred             hhcCCCCcEEEeccCCCCCCCcCccchhhhcCCCCCcEEEeecccCCccCcccCccccCCCCCcEEecccccccCCCCCC
Q 039475           56 IFDAKKLRSLSLFYDSKGQSAASPVLQGLFDQLTCLRALKIEELWYGDQTIEIPKGLENLIHLRYLKLSAVEELSETCYC  135 (286)
Q Consensus        56 ~~~l~~Lr~L~l~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~i~~lP~~i~~L~~Lr~L~L~~~~~LP~~~~~  135 (286)
                      +....+|....+++|.+...     .+.+-..++.+..|++++    +.+..+|.++..++.||.|+++.          
T Consensus        49 l~~~~el~~i~ls~N~fk~f-----p~kft~kf~t~t~lNl~~----neisdvPeE~Aam~aLr~lNl~~----------  109 (177)
T KOG4579|consen   49 LSKGYELTKISLSDNGFKKF-----PKKFTIKFPTATTLNLAN----NEISDVPEELAAMPALRSLNLRF----------  109 (177)
T ss_pred             HhCCceEEEEecccchhhhC-----CHHHhhccchhhhhhcch----hhhhhchHHHhhhHHhhhccccc----------
Confidence            34455666677777765431     334445566777888888    88888888888888888888874          


Q ss_pred             CCCcccccccccccCCCEEEecCCCccccccc
Q 039475          136 PSLKRLPQGRGKLINLRHLIFDKDYLAYMANG  167 (286)
Q Consensus       136 ~~l~~LP~~i~~L~~L~~L~l~~~~~~~lP~~  167 (286)
                      +.+...|..|..|.+|-.|+..+|....+|-.
T Consensus       110 N~l~~~p~vi~~L~~l~~Lds~~na~~eid~d  141 (177)
T KOG4579|consen  110 NPLNAEPRVIAPLIKLDMLDSPENARAEIDVD  141 (177)
T ss_pred             CccccchHHHHHHHhHHHhcCCCCccccCcHH
Confidence            66777777777788888887777766666644

>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]

Probab=97.00  E-value=3.4e-05  Score=73.77  Aligned_cols=119  Identities=19%  Similarity=0.127  Sum_probs=85.4

Q ss_pred             EEeecCCCCCCchhhhcCCCCcEEEeccCCCCCCCcCccchhhhcCCCCCcEEEeecccCCccCcccCcc-ccCCCCCcE
Q 039475           42 LTLMLGLPTKFPVSIFDAKKLRSLSLFYDSKGQSAASPVLQGLFDQLTCLRALKIEELWYGDQTIEIPKG-LENLIHLRY  120 (286)
Q Consensus        42 ls~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~i~~lP~~-i~~L~~Lr~  120 (286)
                      .++..|....+..++.-++.|++|+++.|....       -+.+..+.+|+.|||+.    |.+..+|.- -..+ +|+.
T Consensus       169 a~fsyN~L~~mD~SLqll~ale~LnLshNk~~~-------v~~Lr~l~~LkhLDlsy----N~L~~vp~l~~~gc-~L~~  236 (1096)
T KOG1859|consen  169 ASFSYNRLVLMDESLQLLPALESLNLSHNKFTK-------VDNLRRLPKLKHLDLSY----NCLRHVPQLSMVGC-KLQL  236 (1096)
T ss_pred             hhcchhhHHhHHHHHHHHHHhhhhccchhhhhh-------hHHHHhccccccccccc----chhccccccchhhh-hhee
Confidence            344444444455667778899999999997653       23678899999999999    998888852 2223 3899


Q ss_pred             EecccccccCCCCCCCCCcccccccccccCCCEEEecCCCccccc--cccccccccccccccccc
Q 039475          121 LKLSAVEELSETCYCPSLKRLPQGRGKLINLRHLIFDKDYLAYMA--NGFERLTSLRTLSGFTVA  183 (286)
Q Consensus       121 L~L~~~~~LP~~~~~~~l~~LP~~i~~L~~L~~L~l~~~~~~~lP--~~i~~L~~L~~L~~~~~~  183 (286)
                      |.+++          +.+++|- +|.+|++|++||+++|-+....  .-++.|..|+.|.+-++.
T Consensus       237 L~lrn----------N~l~tL~-gie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNP  290 (1096)
T KOG1859|consen  237 LNLRN----------NALTTLR-GIENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNP  290 (1096)
T ss_pred             eeecc----------cHHHhhh-hHHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCc
Confidence            99986          6677665 7889999999999987655332  226677777777665443

>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]

Probab=96.99  E-value=0.00031  Score=61.84  Aligned_cols=201  Identities=20%  Similarity=0.172  Sum_probs=116.3

Q ss_pred             CCchhhhcCCCCcEEEeccCCCCCCCcCccchhhhcCCCCCcEEEeecccCCccCcccCcc-------ccCCCCCcEEec
Q 039475           51 KFPVSIFDAKKLRSLSLFYDSKGQSAASPVLQGLFDQLTCLRALKIEELWYGDQTIEIPKG-------LENLIHLRYLKL  123 (286)
Q Consensus        51 ~~~~~~~~l~~Lr~L~l~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~i~~lP~~-------i~~L~~Lr~L~L  123 (286)
                      .+.+....+..+..+.++||.+... .++++...+.+.+.||.-+|++.-.+-...++|+.       +-...+|++|||
T Consensus        21 ~v~~~~~~~~s~~~l~lsgnt~G~E-Aa~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldL   99 (382)
T KOG1909|consen   21 DVEEELEPMDSLTKLDLSGNTFGTE-AARAIAKVLASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLDL   99 (382)
T ss_pred             hHHHHhcccCceEEEeccCCchhHH-HHHHHHHHHhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEeec
Confidence            3455667788999999999987543 34567778888999999999872110012356653       345568999999


Q ss_pred             cc--ccccCCCCCCCCCcccccccccccCCCEEEecCCCccccccc--------------ccccccccccccccccccCC
Q 039475          124 SA--VEELSETCYCPSLKRLPQGRGKLINLRHLIFDKDYLAYMANG--------------FERLTSLRTLSGFTVARVGG  187 (286)
Q Consensus       124 ~~--~~~LP~~~~~~~l~~LP~~i~~L~~L~~L~l~~~~~~~lP~~--------------i~~L~~L~~L~~~~~~~~~~  187 (286)
                      |+  ++       -+.++.|-.-+...+.|++|++.+|.+...-.+              +++-.+|+++....+.... 
T Consensus       100 SDNA~G-------~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrlen-  171 (382)
T KOG1909|consen  100 SDNAFG-------PKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRLEN-  171 (382)
T ss_pred             cccccC-------ccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeecccccc-
Confidence            86  11       122233333456678899999988766432211              2233345554433332210 


Q ss_pred             ccCCCCC-Cc-ccccCcccccceeEEcccCCccc-chhhhhhcCCCCCCceEEEEeCCCCCCccchhhccccccchhhHH
Q 039475          188 KYSSEAC-NL-EGLRNLNHLRQFLRICGLGNLQM-RLKINAHLEKKKNLVHLTLDFDKGEDEEDEDYEEAPNLMNEENEA  264 (286)
Q Consensus       188 ~~~~~~~-~~-~~l~~L~~L~~~L~i~~l~~~~~-~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~~  264 (286)
                          .+. .+ ..++..+.|+ .+.+....-... ..++...+..+++|+.|+|..|..+..                  
T Consensus       172 ----~ga~~~A~~~~~~~~le-evr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~e------------------  228 (382)
T KOG1909|consen  172 ----GGATALAEAFQSHPTLE-EVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLE------------------  228 (382)
T ss_pred             ----ccHHHHHHHHHhccccc-eEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhH------------------
Confidence                000 01 1133334444 555554322222 335667788888899999988887732                  


Q ss_pred             HHHHHHHhcCCCCCcccCC
Q 039475          265 KQEAICEALQAPPNIVIRN  283 (286)
Q Consensus       265 ~~~~~~~~L~~~~~L~~l~  283 (286)
                      ....+-+.|+..++|+.|+
T Consensus       229 gs~~LakaL~s~~~L~El~  247 (382)
T KOG1909|consen  229 GSVALAKALSSWPHLRELN  247 (382)
T ss_pred             HHHHHHHHhcccchheeec
Confidence            1233445566666777765

>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]

Probab=96.95  E-value=6.2e-05  Score=57.94  Aligned_cols=85  Identities=15%  Similarity=0.152  Sum_probs=66.5

Q ss_pred             hhcCCCCCcEEEeecccCCccCcccCccccCC-CCCcEEecccccccCCCCCCCCCcccccccccccCCCEEEecCCCcc
Q 039475           84 LFDQLTCLRALKIEELWYGDQTIEIPKGLENL-IHLRYLKLSAVEELSETCYCPSLKRLPQGRGKLINLRHLIFDKDYLA  162 (286)
Q Consensus        84 ~~~~l~~Lr~L~L~~~~~~~~i~~lP~~i~~L-~~Lr~L~L~~~~~LP~~~~~~~l~~LP~~i~~L~~L~~L~l~~~~~~  162 (286)
                      .+....+|...+|++    |.+..+|+.+... .-+..|++.+          +.+.++|.++..|+.|+.|+++.|.+.
T Consensus        48 ~l~~~~el~~i~ls~----N~fk~fp~kft~kf~t~t~lNl~~----------neisdvPeE~Aam~aLr~lNl~~N~l~  113 (177)
T KOG4579|consen   48 MLSKGYELTKISLSD----NGFKKFPKKFTIKFPTATTLNLAN----------NEISDVPEELAAMPALRSLNLRFNPLN  113 (177)
T ss_pred             HHhCCceEEEEeccc----chhhhCCHHHhhccchhhhhhcch----------hhhhhchHHHhhhHHhhhcccccCccc
Confidence            345566777778888    8888888877443 4778888875          788899999999999999999999888


Q ss_pred             cccccccccccccccccccc
Q 039475          163 YMANGFERLTSLRTLSGFTV  182 (286)
Q Consensus       163 ~lP~~i~~L~~L~~L~~~~~  182 (286)
                      ..|+-|..|.+|-.|+.-..
T Consensus       114 ~~p~vi~~L~~l~~Lds~~n  133 (177)
T KOG4579|consen  114 AEPRVIAPLIKLDMLDSPEN  133 (177)
T ss_pred             cchHHHHHHHhHHHhcCCCC
Confidence            88888888887777765433

>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]

Probab=96.57  E-value=0.0027  Score=52.10  Aligned_cols=105  Identities=20%  Similarity=0.248  Sum_probs=73.4

Q ss_pred             CCCCcEEEeecccCCccCcccCccccCCCCCcEEecccccccCCCCCCCCCccccccccc-ccCCCEEEecCCCccccc-
Q 039475           88 LTCLRALKIEELWYGDQTIEIPKGLENLIHLRYLKLSAVEELSETCYCPSLKRLPQGRGK-LINLRHLIFDKDYLAYMA-  165 (286)
Q Consensus        88 l~~Lr~L~L~~~~~~~~i~~lP~~i~~L~~Lr~L~L~~~~~LP~~~~~~~l~~LP~~i~~-L~~L~~L~l~~~~~~~lP-  165 (286)
                      +...-.+||++    +.+..++ .+..+..|.+|.+.+          +++..+-..+.. +++|+.|.+.+|++..+- 
T Consensus        41 ~d~~d~iDLtd----Ndl~~l~-~lp~l~rL~tLll~n----------NrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~d  105 (233)
T KOG1644|consen   41 LDQFDAIDLTD----NDLRKLD-NLPHLPRLHTLLLNN----------NRITRIDPDLDTFLPNLKTLILTNNSIQELGD  105 (233)
T ss_pred             ccccceecccc----cchhhcc-cCCCccccceEEecC----------CcceeeccchhhhccccceEEecCcchhhhhh
Confidence            34567889999    8877665 577888999999985          888888777754 457999999999888763 


Q ss_pred             -ccccccccccccccccccccCCccCCCCCCcccccCcccccceeEEc
Q 039475          166 -NGFERLTSLRTLSGFTVARVGGKYSSEACNLEGLRNLNHLRQFLRIC  212 (286)
Q Consensus       166 -~~i~~L~~L~~L~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~~L~i~  212 (286)
                       ..+..++.|++|.+..+....    +.....-.+-.+++|+ .|+..
T Consensus       106 l~pLa~~p~L~~Ltll~Npv~~----k~~YR~yvl~klp~l~-~LDF~  148 (233)
T KOG1644|consen  106 LDPLASCPKLEYLTLLGNPVEH----KKNYRLYVLYKLPSLR-TLDFQ  148 (233)
T ss_pred             cchhccCCccceeeecCCchhc----ccCceeEEEEecCcce-Eeehh
Confidence             346677788888776665442    1133344455666555 55555

>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=96.29  E-value=0.0019  Score=33.32  Aligned_cols=22  Identities=27%  Similarity=0.406  Sum_probs=14.5

Q ss_pred             CCCEEEecCCCccccccccccc
Q 039475          150 NLRHLIFDKDYLAYMANGFERL  171 (286)
Q Consensus       150 ~L~~L~l~~~~~~~lP~~i~~L  171 (286)
                      +|++|++++|.++.+|.+|++|
T Consensus         1 ~L~~Ldls~n~l~~ip~~~~~l   22 (22)
T PF00560_consen    1 NLEYLDLSGNNLTSIPSSFSNL   22 (22)
T ss_dssp             TESEEEETSSEESEEGTTTTT-
T ss_pred             CccEEECCCCcCEeCChhhcCC
Confidence            4677777777777777666543

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....

>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=96.16  E-value=0.0021  Score=33.20  Aligned_cols=22  Identities=27%  Similarity=0.462  Sum_probs=14.8

Q ss_pred             CCcEEEeecccCCccCcccCccccCC
Q 039475           90 CLRALKIEELWYGDQTIEIPKGLENL  115 (286)
Q Consensus        90 ~Lr~L~L~~~~~~~~i~~lP~~i~~L  115 (286)
                      +|++||+++    |.++.+|++|++|
T Consensus         1 ~L~~Ldls~----n~l~~ip~~~~~l   22 (22)
T PF00560_consen    1 NLEYLDLSG----NNLTSIPSSFSNL   22 (22)
T ss_dssp             TESEEEETS----SEESEEGTTTTT-
T ss_pred             CccEEECCC----CcCEeCChhhcCC
Confidence            367777777    7777777766553

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....

>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]

Probab=95.86  E-value=0.014  Score=48.06  Aligned_cols=105  Identities=21%  Similarity=0.229  Sum_probs=74.4

Q ss_pred             CCCCcEEEeccCCCCCCCcCccchhhhcCCCCCcEEEeecccCCccCcccCccccCC-CCCcEEecccccccCCCCCCCC
Q 039475           59 AKKLRSLSLFYDSKGQSAASPVLQGLFDQLTCLRALKIEELWYGDQTIEIPKGLENL-IHLRYLKLSAVEELSETCYCPS  137 (286)
Q Consensus        59 l~~Lr~L~l~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~i~~lP~~i~~L-~~Lr~L~L~~~~~LP~~~~~~~  137 (286)
                      +.+...+++.+|....       -+.|..+..|..|.|.+    |.|..+-..++.+ .+|..|.|.+          ++
T Consensus        41 ~d~~d~iDLtdNdl~~-------l~~lp~l~rL~tLll~n----NrIt~I~p~L~~~~p~l~~L~Ltn----------Ns   99 (233)
T KOG1644|consen   41 LDQFDAIDLTDNDLRK-------LDNLPHLPRLHTLLLNN----NRITRIDPDLDTFLPNLKTLILTN----------NS   99 (233)
T ss_pred             ccccceecccccchhh-------cccCCCccccceEEecC----CcceeeccchhhhccccceEEecC----------cc
Confidence            3355677888877542       23367888899999999    8888887777654 5688888875          66


Q ss_pred             Cccccc--ccccccCCCEEEecCCCcccccc----cccccccccccccccccc
Q 039475          138 LKRLPQ--GRGKLINLRHLIFDKDYLAYMAN----GFERLTSLRTLSGFTVAR  184 (286)
Q Consensus       138 l~~LP~--~i~~L~~L~~L~l~~~~~~~lP~----~i~~L~~L~~L~~~~~~~  184 (286)
                      +++|-+  .+..+++|++|.+-+|.+...+.    -+.++++|++|+...+..
T Consensus       100 i~~l~dl~pLa~~p~L~~Ltll~Npv~~k~~YR~yvl~klp~l~~LDF~kVt~  152 (233)
T KOG1644|consen  100 IQELGDLDPLASCPKLEYLTLLGNPVEHKKNYRLYVLYKLPSLRTLDFQKVTR  152 (233)
T ss_pred             hhhhhhcchhccCCccceeeecCCchhcccCceeEEEEecCcceEeehhhhhH
Confidence            666532  34566788888888877765442    278888999998776643

>KOG2982 consensus Uncharacterized conserved protein [Function unknown]

Probab=95.85  E-value=0.0033  Score=54.62  Aligned_cols=17  Identities=24%  Similarity=0.225  Sum_probs=7.6

Q ss_pred             hcCCCCCCceEEEEeCC
Q 039475          226 HLEKKKNLVHLTLDFDK  242 (286)
Q Consensus       226 ~l~~l~~L~~L~L~~~~  242 (286)
                      .+.++++|..|.++.+.
T Consensus       244 ~Ln~f~~l~dlRv~~~P  260 (418)
T KOG2982|consen  244 ALNGFPQLVDLRVSENP  260 (418)
T ss_pred             HHcCCchhheeeccCCc
Confidence            34444444444444443

>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=95.36  E-value=0.0084  Score=50.98  Aligned_cols=89  Identities=22%  Similarity=0.278  Sum_probs=56.5

Q ss_pred             chhhhcCCCCCcEEEeecccCCccCcccCccccCCCCCcEEecccccccCCCCCCC--CC-cccccccccccCCCEEEec
Q 039475           81 LQGLFDQLTCLRALKIEELWYGDQTIEIPKGLENLIHLRYLKLSAVEELSETCYCP--SL-KRLPQGRGKLINLRHLIFD  157 (286)
Q Consensus        81 ~~~~~~~l~~Lr~L~L~~~~~~~~i~~lP~~i~~L~~Lr~L~L~~~~~LP~~~~~~--~l-~~LP~~i~~L~~L~~L~l~  157 (286)
                      +......+..|..|.+.+    ..++.+- .+-.|++|++|.++.          +  .+ ..++.-..++++|++|.++
T Consensus        35 ~~gl~d~~~~le~ls~~n----~gltt~~-~~P~Lp~LkkL~lsd----------n~~~~~~~l~vl~e~~P~l~~l~ls   99 (260)
T KOG2739|consen   35 LGGLTDEFVELELLSVIN----VGLTTLT-NFPKLPKLKKLELSD----------NYRRVSGGLEVLAEKAPNLKVLNLS   99 (260)
T ss_pred             cccccccccchhhhhhhc----cceeecc-cCCCcchhhhhcccC----------CcccccccceehhhhCCceeEEeec
Confidence            344445566666666666    5443322 334688999999984          4  22 2455555666999999999


Q ss_pred             CCCccccc--ccccccccccccccccccc
Q 039475          158 KDYLAYMA--NGFERLTSLRTLSGFTVAR  184 (286)
Q Consensus       158 ~~~~~~lP--~~i~~L~~L~~L~~~~~~~  184 (286)
                      +|++..+-  ....++.+|..|+++.+..
T Consensus       100 ~Nki~~lstl~pl~~l~nL~~Ldl~n~~~  128 (260)
T KOG2739|consen  100 GNKIKDLSTLRPLKELENLKSLDLFNCSV  128 (260)
T ss_pred             CCccccccccchhhhhcchhhhhcccCCc
Confidence            99876421  2356666777777777653

>KOG2982 consensus Uncharacterized conserved protein [Function unknown]

Probab=95.31  E-value=0.0067  Score=52.80  Aligned_cols=63  Identities=14%  Similarity=0.005  Sum_probs=34.4

Q ss_pred             ccccccccccccccccccCCccCCCCCCcccccCcccccceeEEcccCCccc---chhhhhhcCCCCCCceEE
Q 039475          168 FERLTSLRTLSGFTVARVGGKYSSEACNLEGLRNLNHLRQFLRICGLGNLQM---RLKINAHLEKKKNLVHLT  237 (286)
Q Consensus       168 i~~L~~L~~L~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~~L~i~~l~~~~~---~~~~~~~l~~l~~L~~L~  237 (286)
                      ...++.+-.|.+...+..      ....+.++..+++|+ .|.+.+..-...   .+...-.++.+++++-|+
T Consensus       220 se~~p~~~~LnL~~~~id------swasvD~Ln~f~~l~-dlRv~~~Pl~d~l~~~err~llIaRL~~v~vLN  285 (418)
T KOG2982|consen  220 SEPFPSLSCLNLGANNID------SWASVDALNGFPQLV-DLRVSENPLSDPLRGGERRFLLIARLTKVQVLN  285 (418)
T ss_pred             CCCCCcchhhhhcccccc------cHHHHHHHcCCchhh-eeeccCCcccccccCCcceEEEEeeccceEEec
Confidence            334444444444444444      355677788888888 788775433222   222223456667766664

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]

Probab=95.05  E-value=0.0037  Score=54.38  Aligned_cols=62  Identities=21%  Similarity=0.186  Sum_probs=43.0

Q ss_pred             ccccCCCEEEecCCCcc--cccccccccccccccccccccccCCccCCCCCCcccccCcccccceeEEccc
Q 039475          146 GKLINLRHLIFDKDYLA--YMANGFERLTSLRTLSGFTVARVGGKYSSEACNLEGLRNLNHLRQFLRICGL  214 (286)
Q Consensus       146 ~~L~~L~~L~l~~~~~~--~lP~~i~~L~~L~~L~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~~L~i~~l  214 (286)
                      .+.++|-+||++++..-  ..-..|-+++.|++|.+..|...      .+..+-++...+.|. +|.+.++
T Consensus       310 ~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lSlsRCY~i------~p~~~~~l~s~psl~-yLdv~g~  373 (419)
T KOG2120|consen  310 RRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHLSLSRCYDI------IPETLLELNSKPSLV-YLDVFGC  373 (419)
T ss_pred             HhCCceeeeccccccccCchHHHHHHhcchheeeehhhhcCC------ChHHeeeeccCcceE-EEEeccc
Confidence            45678999999885332  33355788899999988877644      355566677777776 6777643

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]

Probab=94.59  E-value=0.0036  Score=54.44  Aligned_cols=156  Identities=19%  Similarity=0.150  Sum_probs=86.4

Q ss_pred             CCCcEEEeccCCCCCCCcCccchhhhcCCCCCcEEEeecccCCccCc-ccCccccCCCCCcEEecccccccCCCCCCCCC
Q 039475           60 KKLRSLSLFYDSKGQSAASPVLQGLFDQLTCLRALKIEELWYGDQTI-EIPKGLENLIHLRYLKLSAVEELSETCYCPSL  138 (286)
Q Consensus        60 ~~Lr~L~l~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~i~-~lP~~i~~L~~Lr~L~L~~~~~LP~~~~~~~l  138 (286)
                      ++|+.|++++.......    +...++.+.+|+-|.|+|    ..+. .+-..|.+=.+|+.|+|+.         |+.+
T Consensus       185 sRlq~lDLS~s~it~st----l~~iLs~C~kLk~lSlEg----~~LdD~I~~~iAkN~~L~~lnlsm---------~sG~  247 (419)
T KOG2120|consen  185 SRLQHLDLSNSVITVST----LHGILSQCSKLKNLSLEG----LRLDDPIVNTIAKNSNLVRLNLSM---------CSGF  247 (419)
T ss_pred             hhhHHhhcchhheeHHH----HHHHHHHHHhhhhccccc----cccCcHHHHHHhccccceeecccc---------cccc
Confidence            45777777776654322    555667777888888888    6655 3445666777788888874         4433


Q ss_pred             ccccc--ccccccCCCEEEecCCCcc------------------------------cccccccccccccccccccccccC
Q 039475          139 KRLPQ--GRGKLINLRHLIFDKDYLA------------------------------YMANGFERLTSLRTLSGFTVARVG  186 (286)
Q Consensus       139 ~~LP~--~i~~L~~L~~L~l~~~~~~------------------------------~lP~~i~~L~~L~~L~~~~~~~~~  186 (286)
                      ++.-.  -+.+++.|+.|+++++...                              .+.--..+..+|.+|+++++... 
T Consensus       248 t~n~~~ll~~scs~L~~LNlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l-  326 (419)
T KOG2120|consen  248 TENALQLLLSSCSRLDELNLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVML-  326 (419)
T ss_pred             chhHHHHHHHhhhhHhhcCchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeecccccccc-
Confidence            33211  1234444444444432110                              11001235566667777665433 


Q ss_pred             CccCCCCCCcccccCcccccceeEEcccCCcccchhhhhhcCCCCCCceEEEEeC
Q 039475          187 GKYSSEACNLEGLRNLNHLRQFLRICGLGNLQMRLKINAHLEKKKNLVHLTLDFD  241 (286)
Q Consensus       187 ~~~~~~~~~~~~l~~L~~L~~~L~i~~l~~~~~~~~~~~~l~~l~~L~~L~L~~~  241 (286)
                           ....+.++-+++.|+ .|++..+..+.  ......+..++.|.+|++...
T Consensus       327 -----~~~~~~~~~kf~~L~-~lSlsRCY~i~--p~~~~~l~s~psl~yLdv~g~  373 (419)
T KOG2120|consen  327 -----KNDCFQEFFKFNYLQ-HLSLSRCYDII--PETLLELNSKPSLVYLDVFGC  373 (419)
T ss_pred             -----CchHHHHHHhcchhe-eeehhhhcCCC--hHHeeeeccCcceEEEEeccc
Confidence                 123344555666666 67776544332  222345677888888888543

>KOG2123 consensus Uncharacterized conserved protein [Function unknown]

Probab=94.56  E-value=0.005  Score=53.08  Aligned_cols=75  Identities=23%  Similarity=0.205  Sum_probs=34.4

Q ss_pred             CCCcEEEeecccCCccCcccCccccCCCCCcEEecccccccCCCCCCCCCcccccccccccCCCEEEecCCCccccc--c
Q 039475           89 TCLRALKIEELWYGDQTIEIPKGLENLIHLRYLKLSAVEELSETCYCPSLKRLPQGRGKLINLRHLIFDKDYLAYMA--N  166 (286)
Q Consensus        89 ~~Lr~L~L~~~~~~~~i~~lP~~i~~L~~Lr~L~L~~~~~LP~~~~~~~l~~LP~~i~~L~~L~~L~l~~~~~~~lP--~  166 (286)
                      .+.+-|++-|    +.+..+. -+.++..|+.|.|+          .++++.|- .+...++|+.|+|+.|.|..+-  .
T Consensus        19 ~~vkKLNcwg----~~L~DIs-ic~kMp~lEVLsLS----------vNkIssL~-pl~rCtrLkElYLRkN~I~sldEL~   82 (388)
T KOG2123|consen   19 ENVKKLNCWG----CGLDDIS-ICEKMPLLEVLSLS----------VNKISSLA-PLQRCTRLKELYLRKNCIESLDELE   82 (388)
T ss_pred             HHhhhhcccC----CCccHHH-HHHhcccceeEEee----------ccccccch-hHHHHHHHHHHHHHhcccccHHHHH
Confidence            3344444444    4444332 22345555555555          24444442 2444555555555555554432  1


Q ss_pred             ccccccccccccc
Q 039475          167 GFERLTSLRTLSG  179 (286)
Q Consensus       167 ~i~~L~~L~~L~~  179 (286)
                      .+.++++|++|-+
T Consensus        83 YLknlpsLr~LWL   95 (388)
T KOG2123|consen   83 YLKNLPSLRTLWL   95 (388)
T ss_pred             HHhcCchhhhHhh
Confidence            2344444444433

>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A

Probab=94.11  E-value=0.17  Score=38.15  Aligned_cols=99  Identities=15%  Similarity=0.323  Sum_probs=42.4

Q ss_pred             hhcCCCCcEEEeccCCCCCCCcCccchhhhcCCCCCcEEEeecccCCccCcccCc-cccCCCCCcEEecccccccCCCCC
Q 039475           56 IFDAKKLRSLSLFYDSKGQSAASPVLQGLFDQLTCLRALKIEELWYGDQTIEIPK-GLENLIHLRYLKLSAVEELSETCY  134 (286)
Q Consensus        56 ~~~l~~Lr~L~l~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~i~~lP~-~i~~L~~Lr~L~L~~~~~LP~~~~  134 (286)
                      |.+.++|+.+.+.....   .   +-...|.++..|+.+.+.+    + +..++. .+.++..|+++.+..         
T Consensus         8 F~~~~~l~~i~~~~~~~---~---I~~~~F~~~~~l~~i~~~~----~-~~~i~~~~F~~~~~l~~i~~~~---------   67 (129)
T PF13306_consen    8 FYNCSNLESITFPNTIK---K---IGENAFSNCTSLKSINFPN----N-LTSIGDNAFSNCKSLESITFPN---------   67 (129)
T ss_dssp             TTT-TT--EEEETST-----E---E-TTTTTT-TT-SEEEESS----T-TSCE-TTTTTT-TT-EEEEETS---------
T ss_pred             HhCCCCCCEEEECCCee---E---eChhhcccccccccccccc----c-ccccceeeeecccccccccccc---------
Confidence            44555666666653211   1   1334566666677777655    3 444444 445665677777652         


Q ss_pred             CCCCccccc-ccccccCCCEEEecCCCccccccc-ccccccccccc
Q 039475          135 CPSLKRLPQ-GRGKLINLRHLIFDKDYLAYMANG-FERLTSLRTLS  178 (286)
Q Consensus       135 ~~~l~~LP~-~i~~L~~L~~L~l~~~~~~~lP~~-i~~L~~L~~L~  178 (286)
                        .+..++. .+...++|+.+.+..+ +..++.. +.+. +|+.+.
T Consensus        68 --~~~~i~~~~F~~~~~l~~i~~~~~-~~~i~~~~f~~~-~l~~i~  109 (129)
T PF13306_consen   68 --NLKSIGDNAFSNCTNLKNIDIPSN-ITEIGSSSFSNC-NLKEIN  109 (129)
T ss_dssp             --TT-EE-TTTTTT-TTECEEEETTT--BEEHTTTTTT--T--EEE
T ss_pred             --cccccccccccccccccccccCcc-ccEEchhhhcCC-CceEEE
Confidence              3444443 2344556666666543 4444433 5554 555554

>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]

Probab=93.90  E-value=0.045  Score=47.22  Aligned_cols=107  Identities=17%  Similarity=0.134  Sum_probs=70.1

Q ss_pred             CCchhhhcCCCCcEEEeccCCCCCCCcCccchhhhcCCCCCcEEEeecccCCcc-CcccCc-------cccCCCCCcEEe
Q 039475           51 KFPVSIFDAKKLRSLSLFYDSKGQSAASPVLQGLFDQLTCLRALKIEELWYGDQ-TIEIPK-------GLENLIHLRYLK  122 (286)
Q Consensus        51 ~~~~~~~~l~~Lr~L~l~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~-i~~lP~-------~i~~L~~Lr~L~  122 (286)
                      .+...+..+..+..++++||.+... +.+.+...+.+-+.|++-.++..- ... ..++|+       .+-++++|+..+
T Consensus        21 ~v~eel~~~d~~~evdLSGNtigtE-A~e~l~~~ia~~~~L~vvnfsd~f-tgr~kde~~~~L~~Ll~aLlkcp~l~~v~   98 (388)
T COG5238          21 GVVEELEMMDELVEVDLSGNTIGTE-AMEELCNVIANVRNLRVVNFSDAF-TGRDKDELYSNLVMLLKALLKCPRLQKVD   98 (388)
T ss_pred             HHHHHHHhhcceeEEeccCCcccHH-HHHHHHHHHhhhcceeEeehhhhh-hcccHHHHHHHHHHHHHHHhcCCcceeee
Confidence            3455566688999999999987543 234467777888899999988721 011 123443       556889999999


Q ss_pred             cccccccCCC-CCCCCCcccccccccccCCCEEEecCCCccccc
Q 039475          123 LSAVEELSET-CYCPSLKRLPQGRGKLINLRHLIFDKDYLAYMA  165 (286)
Q Consensus       123 L~~~~~LP~~-~~~~~l~~LP~~i~~L~~L~~L~l~~~~~~~lP  165 (286)
                      |++      . ++......|-.-|.+-+.|.||.+++|.+..+.
T Consensus        99 LSD------NAfg~~~~e~L~d~is~~t~l~HL~l~NnGlGp~a  136 (388)
T COG5238          99 LSD------NAFGSEFPEELGDLISSSTDLVHLKLNNNGLGPIA  136 (388)
T ss_pred             ccc------cccCcccchHHHHHHhcCCCceeEEeecCCCCccc
Confidence            986      0 011112223334677789999999998776543

>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=93.87  E-value=0.034  Score=47.34  Aligned_cols=110  Identities=23%  Similarity=0.191  Sum_probs=72.2

Q ss_pred             chhhhcCCCCcEEEeccCCCCCCCcCccchhhhcCCCCCcEEEeecccCCc--cCc-ccCccccCCCCCcEEeccccccc
Q 039475           53 PVSIFDAKKLRSLSLFYDSKGQSAASPVLQGLFDQLTCLRALKIEELWYGD--QTI-EIPKGLENLIHLRYLKLSAVEEL  129 (286)
Q Consensus        53 ~~~~~~l~~Lr~L~l~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~--~i~-~lP~~i~~L~~Lr~L~L~~~~~L  129 (286)
                      ..-...+..|..|.+.+...+..       ..|..+++|+.|+++.    |  .+. .++.-.-++.+|++|++++    
T Consensus        36 ~gl~d~~~~le~ls~~n~gltt~-------~~~P~Lp~LkkL~lsd----n~~~~~~~l~vl~e~~P~l~~l~ls~----  100 (260)
T KOG2739|consen   36 GGLTDEFVELELLSVINVGLTTL-------TNFPKLPKLKKLELSD----NYRRVSGGLEVLAEKAPNLKVLNLSG----  100 (260)
T ss_pred             ccccccccchhhhhhhccceeec-------ccCCCcchhhhhcccC----CcccccccceehhhhCCceeEEeecC----
Confidence            33344556666666666654332       1256788999999999    7  333 5555556669999999986    


Q ss_pred             CCCCCCCCCc---ccccccccccCCCEEEecCCCccccc--c--cccccccccccccccccc
Q 039475          130 SETCYCPSLK---RLPQGRGKLINLRHLIFDKDYLAYMA--N--GFERLTSLRTLSGFTVAR  184 (286)
Q Consensus       130 P~~~~~~~l~---~LP~~i~~L~~L~~L~l~~~~~~~lP--~--~i~~L~~L~~L~~~~~~~  184 (286)
                            ++++   .++ .+.++.+|..|++..+....+-  .  -|.-+++|..|+.+.+..
T Consensus       101 ------Nki~~lstl~-pl~~l~nL~~Ldl~n~~~~~l~dyre~vf~ll~~L~~LD~~dv~~  155 (260)
T KOG2739|consen  101 ------NKIKDLSTLR-PLKELENLKSLDLFNCSVTNLDDYREKVFLLLPSLKYLDGCDVDG  155 (260)
T ss_pred             ------Cccccccccc-hhhhhcchhhhhcccCCccccccHHHHHHHHhhhhccccccccCC
Confidence                  4343   222 3456778888888876555442  2  266778999998877754

>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D

Probab=93.73  E-value=0.049  Score=26.06  Aligned_cols=16  Identities=31%  Similarity=0.457  Sum_probs=8.1

Q ss_pred             CCCEEEecCCCccccc
Q 039475          150 NLRHLIFDKDYLAYMA  165 (286)
Q Consensus       150 ~L~~L~l~~~~~~~lP  165 (286)
                      +|+.|++++|.++++|
T Consensus         2 ~L~~L~l~~n~L~~lP   17 (17)
T PF13504_consen    2 NLRTLDLSNNRLTSLP   17 (17)
T ss_dssp             T-SEEEETSS--SSE-
T ss_pred             ccCEEECCCCCCCCCc
Confidence            5677777777666655

...

>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D

Probab=93.39  E-value=0.052  Score=25.97  Aligned_cols=16  Identities=25%  Similarity=0.590  Sum_probs=7.8

Q ss_pred             CCcEEEeecccCCccCcccC
Q 039475           90 CLRALKIEELWYGDQTIEIP  109 (286)
Q Consensus        90 ~Lr~L~L~~~~~~~~i~~lP  109 (286)
                      +|++|++++    |.+.++|
T Consensus         2 ~L~~L~l~~----n~L~~lP   17 (17)
T PF13504_consen    2 NLRTLDLSN----NRLTSLP   17 (17)
T ss_dssp             T-SEEEETS----S--SSE-
T ss_pred             ccCEEECCC----CCCCCCc
Confidence            566677766    6666554

...

>KOG2123 consensus Uncharacterized conserved protein [Function unknown]

Probab=93.00  E-value=0.0094  Score=51.43  Aligned_cols=103  Identities=17%  Similarity=0.252  Sum_probs=68.7

Q ss_pred             cCCCCcEEEeccCCCCCCCcCccchhhhcCCCCCcEEEeecccCCccCcccCccccCCCCCcEEecccccccCCCCCCCC
Q 039475           58 DAKKLRSLSLFYDSKGQSAASPVLQGLFDQLTCLRALKIEELWYGDQTIEIPKGLENLIHLRYLKLSAVEELSETCYCPS  137 (286)
Q Consensus        58 ~l~~Lr~L~l~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~i~~lP~~i~~L~~Lr~L~L~~~~~LP~~~~~~~  137 (286)
                      ++.+.+.|.+.|+....       -.++.+|+.|.||.|+-    |.|..+- .+..++.|+.|+|+.          +.
T Consensus        17 dl~~vkKLNcwg~~L~D-------Isic~kMp~lEVLsLSv----NkIssL~-pl~rCtrLkElYLRk----------N~   74 (388)
T KOG2123|consen   17 DLENVKKLNCWGCGLDD-------ISICEKMPLLEVLSLSV----NKISSLA-PLQRCTRLKELYLRK----------NC   74 (388)
T ss_pred             HHHHhhhhcccCCCccH-------HHHHHhcccceeEEeec----cccccch-hHHHHHHHHHHHHHh----------cc
Confidence            45666777777776542       13467888889999988    8887764 577888888888875          54


Q ss_pred             Cccccc--ccccccCCCEEEecCCCcc-cccc-----cccccccccccccccc
Q 039475          138 LKRLPQ--GRGKLINLRHLIFDKDYLA-YMAN-----GFERLTSLRTLSGFTV  182 (286)
Q Consensus       138 l~~LP~--~i~~L~~L~~L~l~~~~~~-~lP~-----~i~~L~~L~~L~~~~~  182 (286)
                      +..|-+  -+.+|++|+.|.+..|... .-+.     -+.-|.+|++|+...+
T Consensus        75 I~sldEL~YLknlpsLr~LWL~ENPCc~~ag~nYR~~VLR~LPnLkKLDnv~V  127 (388)
T KOG2123|consen   75 IESLDELEYLKNLPSLRTLWLDENPCCGEAGQNYRRKVLRVLPNLKKLDNVPV  127 (388)
T ss_pred             cccHHHHHHHhcCchhhhHhhccCCcccccchhHHHHHHHHcccchhccCccc
Confidence            554432  3567888888888775433 1221     2566778888765544

>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily

Probab=92.58  E-value=0.088  Score=28.03  Aligned_cols=20  Identities=35%  Similarity=0.506  Sum_probs=17.0

Q ss_pred             ccCCCEEEecCCCccccccc
Q 039475          148 LINLRHLIFDKDYLAYMANG  167 (286)
Q Consensus       148 L~~L~~L~l~~~~~~~lP~~  167 (286)
                      |++|++|++.+|.+..+|.+
T Consensus         1 L~~L~~L~L~~N~l~~lp~~   20 (26)
T smart00369        1 LPNLRELDLSNNQLSSLPPG   20 (26)
T ss_pred             CCCCCEEECCCCcCCcCCHH
Confidence            56889999999999888876

>smart00370 LRR Leucine-rich repeats, outliers

Probab=92.58  E-value=0.088  Score=28.03  Aligned_cols=20  Identities=35%  Similarity=0.506  Sum_probs=17.0

Q ss_pred             ccCCCEEEecCCCccccccc
Q 039475          148 LINLRHLIFDKDYLAYMANG  167 (286)
Q Consensus       148 L~~L~~L~l~~~~~~~lP~~  167 (286)
                      |++|++|++.+|.+..+|.+
T Consensus         1 L~~L~~L~L~~N~l~~lp~~   20 (26)
T smart00370        1 LPNLRELDLSNNQLSSLPPG   20 (26)
T ss_pred             CCCCCEEECCCCcCCcCCHH
Confidence            56889999999999888876

>KOG0473 consensus Leucine-rich repeat protein [Function unknown]

Probab=92.43  E-value=0.0041  Score=52.23  Aligned_cols=86  Identities=19%  Similarity=0.115  Sum_probs=57.5

Q ss_pred             hhcCCCCcEEEeccCCCCCCCcCccchhhhcCCCCCcEEEeecccCCccCcccCccccCCCCCcEEecccccccCCCCCC
Q 039475           56 IFDAKKLRSLSLFYDSKGQSAASPVLQGLFDQLTCLRALKIEELWYGDQTIEIPKGLENLIHLRYLKLSAVEELSETCYC  135 (286)
Q Consensus        56 ~~~l~~Lr~L~l~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~i~~lP~~i~~L~~Lr~L~L~~~~~LP~~~~~  135 (286)
                      +...++...|+++.+....      +..-|+-++.|..||++.    +.+.-+|..++.+..++.+++..          
T Consensus        38 i~~~kr~tvld~~s~r~vn------~~~n~s~~t~~~rl~~sk----nq~~~~~~d~~q~~e~~~~~~~~----------   97 (326)
T KOG0473|consen   38 IASFKRVTVLDLSSNRLVN------LGKNFSILTRLVRLDLSK----NQIKFLPKDAKQQRETVNAASHK----------   97 (326)
T ss_pred             hhccceeeeehhhhhHHHh------hccchHHHHHHHHHhccH----hhHhhChhhHHHHHHHHHHHhhc----------
Confidence            4456666666666665322      233345556666667776    66777777777777777776654          


Q ss_pred             CCCcccccccccccCCCEEEecCCCc
Q 039475          136 PSLKRLPQGRGKLINLRHLIFDKDYL  161 (286)
Q Consensus       136 ~~l~~LP~~i~~L~~L~~L~l~~~~~  161 (286)
                      ++.+.+|.+++++..+++++..+|.+
T Consensus        98 n~~~~~p~s~~k~~~~k~~e~k~~~~  123 (326)
T KOG0473|consen   98 NNHSQQPKSQKKEPHPKKNEQKKTEF  123 (326)
T ss_pred             cchhhCCccccccCCcchhhhccCcc
Confidence            66788888888888888888877754

>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]

Probab=92.25  E-value=0.063  Score=46.34  Aligned_cols=196  Identities=15%  Similarity=0.079  Sum_probs=114.2

Q ss_pred             cCCceEEEeecCCCC-----CCchhhhcCCCCcEEEeccCCCCCCCc-----CccchhhhcCCCCCcEEEeecccCCccC
Q 039475           36 QEKLRHLTLMLGLPT-----KFPVSIFDAKKLRSLSLFYDSKGQSAA-----SPVLQGLFDQLTCLRALKIEELWYGDQT  105 (286)
Q Consensus        36 ~~~~r~ls~~~~~~~-----~~~~~~~~l~~Lr~L~l~~~~~~~~~~-----~~~~~~~~~~l~~Lr~L~L~~~~~~~~i  105 (286)
                      ...+..+.++.|.+.     .+...+.+-++||...+++.......-     -.++...+-++++|+..+|+.    |.+
T Consensus        29 ~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSD----NAf  104 (388)
T COG5238          29 MDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSD----NAF  104 (388)
T ss_pred             hcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccc----ccc
Confidence            456778888888773     234456677888888887765432100     001333456899999999999    665


Q ss_pred             c-ccCc----cccCCCCCcEEeccc--ccccCCC-CCCCCCccc--ccccccccCCCEEEecCCCccccccc-----ccc
Q 039475          106 I-EIPK----GLENLIHLRYLKLSA--VEELSET-CYCPSLKRL--PQGRGKLINLRHLIFDKDYLAYMANG-----FER  170 (286)
Q Consensus       106 ~-~lP~----~i~~L~~Lr~L~L~~--~~~LP~~-~~~~~l~~L--P~~i~~L~~L~~L~l~~~~~~~lP~~-----i~~  170 (286)
                      . ..|+    -|++-+.|..|.+++  ++.+-.. -+ .-+..|  -.-..+-+.|+...+..|++..-|..     +..
T Consensus       105 g~~~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rig-kal~~la~nKKaa~kp~Le~vicgrNRlengs~~~~a~~l~s  183 (388)
T COG5238         105 GSEFPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIG-KALFHLAYNKKAADKPKLEVVICGRNRLENGSKELSAALLES  183 (388)
T ss_pred             CcccchHHHHHHhcCCCceeEEeecCCCCccchhHHH-HHHHHHHHHhhhccCCCceEEEeccchhccCcHHHHHHHHHh
Confidence            4 4444    556778899999986  2221111 00 000001  01233446799999988888766643     333


Q ss_pred             cccccccccccccccCCccCCCCCCcccc--cCcccccceeEEcccCCccc----chhhhhhcCCCCCCceEEEEeCCCC
Q 039475          171 LTSLRTLSGFTVARVGGKYSSEACNLEGL--RNLNHLRQFLRICGLGNLQM----RLKINAHLEKKKNLVHLTLDFDKGE  244 (286)
Q Consensus       171 L~~L~~L~~~~~~~~~~~~~~~~~~~~~l--~~L~~L~~~L~i~~l~~~~~----~~~~~~~l~~l~~L~~L~L~~~~~~  244 (286)
                      -.+|+++.+..++..       +..+..+  -.+...+ +|.+.++....-    +..+...+...+.|+.|++......
T Consensus       184 h~~lk~vki~qNgIr-------pegv~~L~~~gl~y~~-~LevLDlqDNtft~~gS~~La~al~~W~~lrEL~lnDClls  255 (388)
T COG5238         184 HENLKEVKIQQNGIR-------PEGVTMLAFLGLFYSH-SLEVLDLQDNTFTLEGSRYLADALCEWNLLRELRLNDCLLS  255 (388)
T ss_pred             hcCceeEEeeecCcC-------cchhHHHHHHHHHHhC-cceeeeccccchhhhhHHHHHHHhcccchhhhccccchhhc
Confidence            457888888777655       3332222  2223333 444444433322    4556667888888999988655443

>KOG0473 consensus Leucine-rich repeat protein [Function unknown]

Probab=89.89  E-value=0.009  Score=50.24  Aligned_cols=61  Identities=13%  Similarity=-0.028  Sum_probs=33.5

Q ss_pred             hhhhcCCCCcEEEeccCCCCCCCcCccchhhhcCCCCCcEEEeecccCCccCcccCccccCCCCCcEEecc
Q 039475           54 VSIFDAKKLRSLSLFYDSKGQSAASPVLQGLFDQLTCLRALKIEELWYGDQTIEIPKGLENLIHLRYLKLS  124 (286)
Q Consensus        54 ~~~~~l~~Lr~L~l~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~i~~lP~~i~~L~~Lr~L~L~  124 (286)
                      ..+..+..|..|+++.+....      +|..++....++.+++..    |+....|.+++.++|++|+++.
T Consensus        59 ~n~s~~t~~~rl~~sknq~~~------~~~d~~q~~e~~~~~~~~----n~~~~~p~s~~k~~~~k~~e~k  119 (326)
T KOG0473|consen   59 KNFSILTRLVRLDLSKNQIKF------LPKDAKQQRETVNAASHK----NNHSQQPKSQKKEPHPKKNEQK  119 (326)
T ss_pred             cchHHHHHHHHHhccHhhHhh------ChhhHHHHHHHHHHHhhc----cchhhCCccccccCCcchhhhc
Confidence            344445555555555443221      455555555556666655    5566666666666666666654

>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily

Probab=88.64  E-value=0.33  Score=25.71  Aligned_cols=19  Identities=32%  Similarity=0.594  Sum_probs=12.6

Q ss_pred             CCCcEEEeecccCCccCcccCcc
Q 039475           89 TCLRALKIEELWYGDQTIEIPKG  111 (286)
Q Consensus        89 ~~Lr~L~L~~~~~~~~i~~lP~~  111 (286)
                      +.|++|+|++    |.+..+|..
T Consensus         2 ~~L~~L~L~~----N~l~~lp~~   20 (26)
T smart00369        2 PNLRELDLSN----NQLSSLPPG   20 (26)
T ss_pred             CCCCEEECCC----CcCCcCCHH
Confidence            4567777777    667666654

>smart00370 LRR Leucine-rich repeats, outliers

Probab=88.64  E-value=0.33  Score=25.71  Aligned_cols=19  Identities=32%  Similarity=0.594  Sum_probs=12.6

Q ss_pred             CCCcEEEeecccCCccCcccCcc
Q 039475           89 TCLRALKIEELWYGDQTIEIPKG  111 (286)
Q Consensus        89 ~~Lr~L~L~~~~~~~~i~~lP~~  111 (286)
                      +.|++|+|++    |.+..+|..
T Consensus         2 ~~L~~L~L~~----N~l~~lp~~   20 (26)
T smart00370        2 PNLRELDLSN----NQLSSLPPG   20 (26)
T ss_pred             CCCCEEECCC----CcCCcCCHH
Confidence            4567777777    667666654

>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A

Probab=85.43  E-value=1.7  Score=32.48  Aligned_cols=83  Identities=14%  Similarity=0.238  Sum_probs=49.5

Q ss_pred             chhhhcCCCCCcEEEeecccCCccCcccCc-cccCCCCCcEEecccccccCCCCCCCCCccccc-ccccccCCCEEEecC
Q 039475           81 LQGLFDQLTCLRALKIEELWYGDQTIEIPK-GLENLIHLRYLKLSAVEELSETCYCPSLKRLPQ-GRGKLINLRHLIFDK  158 (286)
Q Consensus        81 ~~~~~~~l~~Lr~L~L~~~~~~~~i~~lP~-~i~~L~~Lr~L~L~~~~~LP~~~~~~~l~~LP~-~i~~L~~L~~L~l~~  158 (286)
                      -...|.++..|+.+.+..    . +..+++ .+.++.+|+.+.+..           .+..++. .+.+..+|+.+.+..
T Consensus         4 ~~~~F~~~~~l~~i~~~~----~-~~~I~~~~F~~~~~l~~i~~~~-----------~~~~i~~~~F~~~~~l~~i~~~~   67 (129)
T PF13306_consen    4 GNNAFYNCSNLESITFPN----T-IKKIGENAFSNCTSLKSINFPN-----------NLTSIGDNAFSNCKSLESITFPN   67 (129)
T ss_dssp             -TTTTTT-TT--EEEETS----T---EE-TTTTTT-TT-SEEEESS-----------TTSCE-TTTTTT-TT-EEEEETS
T ss_pred             CHHHHhCCCCCCEEEECC----C-eeEeChhhcccccccccccccc-----------cccccceeeeecccccccccccc
Confidence            345688888999999865    3 555654 567888899999974           4777765 456776899999976


Q ss_pred             CCccccccc-ccccccccccccc
Q 039475          159 DYLAYMANG-FERLTSLRTLSGF  180 (286)
Q Consensus       159 ~~~~~lP~~-i~~L~~L~~L~~~  180 (286)
                       .+..++.. +..+++|+.+.+.
T Consensus        68 -~~~~i~~~~F~~~~~l~~i~~~   89 (129)
T PF13306_consen   68 -NLKSIGDNAFSNCTNLKNIDIP   89 (129)
T ss_dssp             -TT-EE-TTTTTT-TTECEEEET
T ss_pred             -cccccccccccccccccccccC
Confidence             56666654 7778888888763

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	286
3e6j_A	229	Crystal Structure Of Variable Lymphocyte Receptor (		4e-06

>pdb|3E6J|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor (Vlr) Rbc36 In Complex With H-Trisaccharide Length = 229

Iteration: 1
 Score = 48.5 bits (114), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 54/185 (29%), Positives = 82/185 (44%), Gaps = 39/185 (21%)
Query: 32  TNSCQEKLRHLTLMLGLPT-------------KFPVSIFDAKKLRSLSLFYDSKGQSAAS 78
           T  C+ K RH ++  G+PT             K    +FD+  L +L   Y    Q  A 
Sbjct: 23  TVDCRSK-RHASVPAGIPTNAQILYLHDNQITKLEPGVFDS--LINLKELYLGSNQLGAL 79
Query: 79  PVLQGLFDQLTCLRALKIEELWYGDQTIEIPKGL-ENLIHLRYLKLSAVEELSETCYCPS 137
           PV  G+FD LT L  L +      +Q   +P  + + L+HL+ L +           C  
Sbjct: 80  PV--GVFDSLTQLTVLDLGT----NQLTVLPSAVFDRLVHLKELFMC----------CNK 123
Query: 138 LKRLPQGRGKLINLRHLIFDKDYLAYMANG-FERLTSLRTLSGFTVARVGGKYSSEACNL 196
           L  LP+G  +L +L HL  D++ L  + +G F+RL+SL     F     G  +  E  ++
Sbjct: 124 LTELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLF-----GNPWDCECRDI 178
Query: 197 EGLRN 201
             LRN
Sbjct: 179 MYLRN 183

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	286
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	8e-06
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	1e-04
3m19_A	251	Variable lymphocyte receptor A diversity region; a	6e-04

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 45.3 bits (108), Expect = 8e-06
 Identities = 33/176 (18%), Positives = 52/176 (29%), Gaps = 35/176 (19%)

Query: 26  ENPLSLTNSCQEKLRHLTLMLGLPTKFPVSIFDAKKLRSLSLFYDSKGQSAASPVLQGLF 85
                L ++ Q     L L      +FP   F    L+ +++             L  L 
Sbjct: 70  ATADLLEDATQPGRVALELRSVPLPQFPDQAFRLSHLQHMTIDAAG---------LMELP 120

Query: 86  DQLTCLRALKIEELW-YGDQTIEIPKGLENLIHLRYLKLSAVEELSE------------- 131
           D +     L  E L    +    +P  + +L  LR L + A  EL+E             
Sbjct: 121 DTMQQFAGL--ETLTLARNPLRALPASIASLNRLRELSIRACPELTELPEPLASTDASGE 178

Query: 132 ----------TCYCPSLKRLPQGRGKLINLRHLIFDKDYLAYMANGFERLTSLRTL 177
                           ++ LP     L NL+ L      L+ +      L  L  L
Sbjct: 179 HQGLVNLQSLRLEWTGIRSLPASIANLQNLKSLKIRNSPLSALGPAIHHLPKLEEL 234

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 42.2 bits (100), Expect = 1e-04
 Identities = 22/143 (15%), Positives = 38/143 (26%), Gaps = 17/143 (11%)

Query: 37  EKLRHLTLMLGLPTKFPVSIFDAKKLRSLSLFYDSKGQSAASPVLQGLFDQLTCLRALKI 96
           + L               S +      +  +     G++     L+   D L        
Sbjct: 30  DVLSQWQRHYNADRNRWHSAWRQANSNNPQI-ETRTGRA-----LKATADLLEDATQPGR 83

Query: 97  EELWYGDQTIE-IPKGLENLIHLRYLKLSAVEELSETCYCPSLKRLPQGRGKLINLRHLI 155
             L      +   P     L HL+++ +              L  LP    +   L  L 
Sbjct: 84  VALELRSVPLPQFPDQAFRLSHLQHMTID----------AAGLMELPDTMQQFAGLETLT 133

Query: 156 FDKDYLAYMANGFERLTSLRTLS 178
             ++ L  +      L  LR LS
Sbjct: 134 LARNPLRALPASIASLNRLRELS 156

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251

 Score = 39.3 bits (92), Expect = 6e-04
 Identities = 40/144 (27%), Positives = 64/144 (44%), Gaps = 23/144 (15%)

Query: 38  KLRHLTLMLGLPTKFPVSIFDA-KKLRSLSLFYDSKGQSAASPVLQGLFDQLTCLRALKI 96
           KL  L L           +FD   +L +L L  +++  S    +  G+FD LT L  L +
Sbjct: 60  KLTWLNLDYNQLQTLSAGVFDDLTELGTLGL-ANNQLAS----LPLGVFDHLTQLDKLYL 114

Query: 97  EELWYGDQTIEIPKGL-ENLIHLRYLKLSAVEELSETCYCPSLKRLPQGR-GKLINLRHL 154
                G+Q   +P G+ + L  L+ L+L              L+ +P G   KL NL+ L
Sbjct: 115 ----GGNQLKSLPSGVFDRLTKLKELRL----------NTNQLQSIPAGAFDKLTNLQTL 160

Query: 155 IFDKDYLAYMANG-FERLTSLRTL 177
               + L  + +G F+RL  L+T+
Sbjct: 161 SLSTNQLQSVPHGAFDRLGKLQTI 184

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	286
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	99.84
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	99.75
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	99.73
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	99.72
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	99.71
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	99.71
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	99.7
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	99.69
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	99.67
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	99.67
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	99.66
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	99.66
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	99.66
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	99.65
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	99.65
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	99.65
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	99.65
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	99.64
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	99.64
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	99.64
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	99.64
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	99.63
3m19_A	251	Variable lymphocyte receptor A diversity region; a	99.63
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	99.63
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	99.62
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	99.62
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	99.61
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	99.6
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	99.59
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	99.59
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	99.59
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	99.58
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	99.58
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	99.58
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	99.58
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	99.58
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	99.58
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	99.58
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	99.58
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	99.58
3m19_A	251	Variable lymphocyte receptor A diversity region; a	99.57
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	99.57
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	99.57
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	99.57
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	99.57
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	99.57
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	99.56
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	99.56
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	99.56
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	99.56
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	99.55
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	99.55
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	99.54
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	99.54
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	99.54
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	99.54
1o6v_A	466	Internalin A; bacterial infection, extracellular r	99.54
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	99.53
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	99.53
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	99.53
3e6j_A	229	Variable lymphocyte receptor diversity region; var	99.53
3e6j_A	229	Variable lymphocyte receptor diversity region; var	99.52
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	99.52
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	99.52
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	99.51
1o6v_A	466	Internalin A; bacterial infection, extracellular r	99.51
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	99.51
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	99.51
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	99.51
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	99.5
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	99.5
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	99.5
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	99.5
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.5
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	99.49
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	99.48
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	99.48
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	99.48
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.48
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	99.48
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	99.47
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	99.47
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	99.46
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	99.46
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	99.46
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	99.46
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	99.46
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	99.46
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	99.45
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	99.44
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	99.44
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	99.44
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	99.44
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	99.43
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	99.43
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	99.42
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	99.42
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	99.42
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	99.4
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	99.4
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	99.4
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.39
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.39
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	99.39
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	99.37
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	99.36
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	99.34
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	99.34
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	99.34
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	99.33
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	99.33
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	99.33
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	99.32
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	99.31
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	99.31
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	99.3
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	99.3
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	99.29
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	99.27
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	99.26
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	99.26
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	99.25
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	99.25
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	99.23
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	99.21
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	99.21
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	99.21
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	99.19
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	99.17
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	99.15
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	99.13
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	99.11
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	99.07
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	99.0
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	98.99
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	98.95
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	98.84
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	98.77
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	98.72
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	98.7
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	98.54
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	98.5
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	98.28
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	98.16
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	98.13
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	98.13
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	98.12
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	97.95
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	97.73
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	97.69
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	97.51
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	97.38
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	97.15
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	96.79
4fs7_A	394	Uncharacterized protein; leucine-rich repeats, pro	95.9
4fs7_A	394	Uncharacterized protein; leucine-rich repeats, pro	95.69
4gt6_A	394	Cell surface protein; leucine rich repeats, putati	95.57
3rfe_A	130	Platelet glycoprotein IB beta chain; platelet surf	94.86
4gt6_A	394	Cell surface protein; leucine rich repeats, putati	94.71
4h09_A	379	Hypothetical leucine rich repeat protein; two LRR_	94.14
3rfe_A	130	Platelet glycoprotein IB beta chain; platelet surf	94.11
4h09_A	379	Hypothetical leucine rich repeat protein; two LRR_	93.51
1pgv_A	197	TMD-1, tropomodulin TMD-1; structural genomics, PS	86.71
1pgv_A	197	TMD-1, tropomodulin TMD-1; structural genomics, PS	81.16

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=99.84  E-value=1.2e-20  Score=167.54  Aligned_cols=188  Identities=19%  Similarity=0.206  Sum_probs=154.0

Q ss_pred             CCceEEEeecCCCCCCchhhhcCCCCcEEEeccCCCCCCCcCccchhhhcCCCCCcEEEeecccCCccCcccCccccCCC
Q 039475           37 EKLRHLTLMLGLPTKFPVSIFDAKKLRSLSLFYDSKGQSAASPVLQGLFDQLTCLRALKIEELWYGDQTIEIPKGLENLI  116 (286)
Q Consensus        37 ~~~r~ls~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~i~~lP~~i~~L~  116 (286)
                      ..++.+.+..+.+..+|..+.++++|++|++.+|....      +|..|.++++|++|+|++    |.+..+|..++++.
T Consensus        81 ~~l~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~n~l~~------lp~~~~~l~~L~~L~Ls~----n~l~~lp~~l~~l~  150 (328)
T 4fcg_A           81 PGRVALELRSVPLPQFPDQAFRLSHLQHMTIDAAGLME------LPDTMQQFAGLETLTLAR----NPLRALPASIASLN  150 (328)
T ss_dssp             TTCCEEEEESSCCSSCCSCGGGGTTCSEEEEESSCCCC------CCSCGGGGTTCSEEEEES----CCCCCCCGGGGGCT
T ss_pred             cceeEEEccCCCchhcChhhhhCCCCCEEECCCCCccc------hhHHHhccCCCCEEECCC----CccccCcHHHhcCc
Confidence            57889999999888889889899999999999998652      788889999999999999    99889999999999


Q ss_pred             CCcEEeccc---ccccCCC-CC---------C----------CCCcccccccccccCCCEEEecCCCccccccccccccc
Q 039475          117 HLRYLKLSA---VEELSET-CY---------C----------PSLKRLPQGRGKLINLRHLIFDKDYLAYMANGFERLTS  173 (286)
Q Consensus       117 ~Lr~L~L~~---~~~LP~~-~~---------~----------~~l~~LP~~i~~L~~L~~L~l~~~~~~~lP~~i~~L~~  173 (286)
                      +|++|++++   ++.+|.. +.         +          +.++.+|..++++++|++|++++|.+..+|..++.+++
T Consensus       151 ~L~~L~L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~N~l~~l~~~l~~l~~  230 (328)
T 4fcg_A          151 RLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIRSLPASIANLQNLKSLKIRNSPLSALGPAIHHLPK  230 (328)
T ss_dssp             TCCEEEEEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCCCCCGGGGGCTTCCEEEEESSCCCCCCGGGGGCTT
T ss_pred             CCCEEECCCCCCccccChhHhhccchhhhccCCCCCEEECcCCCcCcchHhhcCCCCCCEEEccCCCCCcCchhhccCCC
Confidence            999999987   6677764 31         2          34557898999999999999999999999988999999


Q ss_pred             ccccccccccccCCccCCCCCCcccccCcccccceeEEcccCCcccchhhhhhcCCCCCCceEEEEeCCCCC
Q 039475          174 LRTLSGFTVARVGGKYSSEACNLEGLRNLNHLRQFLRICGLGNLQMRLKINAHLEKKKNLVHLTLDFDKGED  245 (286)
Q Consensus       174 L~~L~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~~L~i~~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~  245 (286)
                      |++|++..+...       +.....++.+++|+ .|.+.++..   ...++..+..+++|+.|+|+.|....
T Consensus       231 L~~L~Ls~n~~~-------~~~p~~~~~l~~L~-~L~L~~n~~---~~~~p~~~~~l~~L~~L~L~~n~~~~  291 (328)
T 4fcg_A          231 LEELDLRGCTAL-------RNYPPIFGGRAPLK-RLILKDCSN---LLTLPLDIHRLTQLEKLDLRGCVNLS  291 (328)
T ss_dssp             CCEEECTTCTTC-------CBCCCCTTCCCCCC-EEECTTCTT---CCBCCTTGGGCTTCCEEECTTCTTCC
T ss_pred             CCEEECcCCcch-------hhhHHHhcCCCCCC-EEECCCCCc---hhhcchhhhcCCCCCEEeCCCCCchh
Confidence            999998876654       44555677788787 788875433   34456678889999999999987763

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=99.75  E-value=6.8e-18  Score=148.70  Aligned_cols=186  Identities=16%  Similarity=0.095  Sum_probs=122.7

Q ss_pred             CCceEEEeecCCCC---CCchhhhcCCCCcEEEecc-CCCCCCCcCccchhhhcCCCCCcEEEeecccCCccCc-ccCcc
Q 039475           37 EKLRHLTLMLGLPT---KFPVSIFDAKKLRSLSLFY-DSKGQSAASPVLQGLFDQLTCLRALKIEELWYGDQTI-EIPKG  111 (286)
Q Consensus        37 ~~~r~ls~~~~~~~---~~~~~~~~l~~Lr~L~l~~-~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~i~-~lP~~  111 (286)
                      .+++++.+..+...   .+|..+.++++|++|++.+ +.....     +|..|.++++|++|++++    +.+. .+|..
T Consensus        50 ~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~-----~p~~l~~l~~L~~L~Ls~----n~l~~~~p~~  120 (313)
T 1ogq_A           50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGP-----IPPAIAKLTQLHYLYITH----TNVSGAIPDF  120 (313)
T ss_dssp             CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESC-----CCGGGGGCTTCSEEEEEE----ECCEEECCGG
T ss_pred             ceEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCccccc-----CChhHhcCCCCCEEECcC----CeeCCcCCHH
Confidence            57899999998885   5889999999999999995 655433     788899999999999999    9987 88999


Q ss_pred             ccCCCCCcEEeccc--cc-ccCCC-CCC----------CCCc-cccccccccc-CCCEEEecCCCcc-cccccccccccc
Q 039475          112 LENLIHLRYLKLSA--VE-ELSET-CYC----------PSLK-RLPQGRGKLI-NLRHLIFDKDYLA-YMANGFERLTSL  174 (286)
Q Consensus       112 i~~L~~Lr~L~L~~--~~-~LP~~-~~~----------~~l~-~LP~~i~~L~-~L~~L~l~~~~~~-~lP~~i~~L~~L  174 (286)
                      ++++++|++|++++  +. .+|.. ..+          +.+. .+|..++++. +|++|++++|.+. .+|..++.++ |
T Consensus       121 ~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~-L  199 (313)
T 1ogq_A          121 LSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-L  199 (313)
T ss_dssp             GGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCC-C
T ss_pred             HhCCCCCCEEeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCc-c
Confidence            99999999999997  33 34433 311          1222 3455555555 5555555555554 4444455554 5


Q ss_pred             cccccccccccCCccCCCCCCcccccCcccccceeEEcccCCcccchhhhhhcCCCCCCceEEEEeCCCC
Q 039475          175 RTLSGFTVARVGGKYSSEACNLEGLRNLNHLRQFLRICGLGNLQMRLKINAHLEKKKNLVHLTLDFDKGE  244 (286)
Q Consensus       175 ~~L~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~~L~i~~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~  244 (286)
                      ++|++..+...       +.....+..+++|+ .|.+.+..-   .. ....+..+++|++|+++.|...
T Consensus       200 ~~L~Ls~N~l~-------~~~~~~~~~l~~L~-~L~L~~N~l---~~-~~~~~~~l~~L~~L~Ls~N~l~  257 (313)
T 1ogq_A          200 AFVDLSRNMLE-------GDASVLFGSDKNTQ-KIHLAKNSL---AF-DLGKVGLSKNLNGLDLRNNRIY  257 (313)
T ss_dssp             SEEECCSSEEE-------ECCGGGCCTTSCCS-EEECCSSEE---CC-BGGGCCCCTTCCEEECCSSCCE
T ss_pred             cEEECcCCccc-------CcCCHHHhcCCCCC-EEECCCCce---ee-ecCcccccCCCCEEECcCCccc
Confidence            55555544332       22334455555555 555553211   11 1223566777777777777665

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=99.73  E-value=2.4e-17  Score=146.18  Aligned_cols=188  Identities=18%  Similarity=0.170  Sum_probs=151.7

Q ss_pred             cCCceEEEeecCCCCCCchhhhcCCCCcEEEeccCCCCCCCcCccchhhhcCCCCCcEEEeecccCCcc-CcccCccccC
Q 039475           36 QEKLRHLTLMLGLPTKFPVSIFDAKKLRSLSLFYDSKGQSAASPVLQGLFDQLTCLRALKIEELWYGDQ-TIEIPKGLEN  114 (286)
Q Consensus        36 ~~~~r~ls~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~-i~~lP~~i~~  114 (286)
                      ....+++.+..+.+..+|..+..+++|++|++.+|....      +|..|.+++.|++|++++    |. +..+|..++.
T Consensus       103 l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~Ls~n~l~~------lp~~l~~l~~L~~L~L~~----n~~~~~~p~~~~~  172 (328)
T 4fcg_A          103 LSHLQHMTIDAAGLMELPDTMQQFAGLETLTLARNPLRA------LPASIASLNRLRELSIRA----CPELTELPEPLAS  172 (328)
T ss_dssp             GTTCSEEEEESSCCCCCCSCGGGGTTCSEEEEESCCCCC------CCGGGGGCTTCCEEEEEE----ETTCCCCCSCSEE
T ss_pred             CCCCCEEECCCCCccchhHHHhccCCCCEEECCCCcccc------CcHHHhcCcCCCEEECCC----CCCccccChhHhh
Confidence            457899999988888888888999999999999987652      777888999999999998    66 5577877654


Q ss_pred             ---------CCCCcEEeccc--ccccCCC-CC----------CCCCcccccccccccCCCEEEecCCCcc-ccccccccc
Q 039475          115 ---------LIHLRYLKLSA--VEELSET-CY----------CPSLKRLPQGRGKLINLRHLIFDKDYLA-YMANGFERL  171 (286)
Q Consensus       115 ---------L~~Lr~L~L~~--~~~LP~~-~~----------~~~l~~LP~~i~~L~~L~~L~l~~~~~~-~lP~~i~~L  171 (286)
                               +.+|++|++++  +..+|.. +.          .+.+..+|..++++++|++|++++|.+. .+|..++.+
T Consensus       173 ~~~~~~~~~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~N~l~~l~~~l~~l~~L~~L~Ls~n~~~~~~p~~~~~l  252 (328)
T 4fcg_A          173 TDASGEHQGLVNLQSLRLEWTGIRSLPASIANLQNLKSLKIRNSPLSALGPAIHHLPKLEELDLRGCTALRNYPPIFGGR  252 (328)
T ss_dssp             EC-CCCEEESTTCCEEEEEEECCCCCCGGGGGCTTCCEEEEESSCCCCCCGGGGGCTTCCEEECTTCTTCCBCCCCTTCC
T ss_pred             ccchhhhccCCCCCEEECcCCCcCcchHhhcCCCCCCEEEccCCCCCcCchhhccCCCCCEEECcCCcchhhhHHHhcCC
Confidence                     88899999888  7788876 53          2446678999999999999999997666 678889999


Q ss_pred             ccccccccccccccCCccCCCCCCcccccCcccccceeEEcccCCcccchhhhhhcCCCCCCceEEEEeCCCC
Q 039475          172 TSLRTLSGFTVARVGGKYSSEACNLEGLRNLNHLRQFLRICGLGNLQMRLKINAHLEKKKNLVHLTLDFDKGE  244 (286)
Q Consensus       172 ~~L~~L~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~~L~i~~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~  244 (286)
                      ++|++|++..+...       +.....+.++++|+ .|.+.++..   ...++..+.++++|+.+.+..+...
T Consensus       253 ~~L~~L~L~~n~~~-------~~~p~~~~~l~~L~-~L~L~~n~~---~~~iP~~l~~L~~L~~l~l~~~~~~  314 (328)
T 4fcg_A          253 APLKRLILKDCSNL-------LTLPLDIHRLTQLE-KLDLRGCVN---LSRLPSLIAQLPANCIILVPPHLQA  314 (328)
T ss_dssp             CCCCEEECTTCTTC-------CBCCTTGGGCTTCC-EEECTTCTT---CCCCCGGGGGSCTTCEEECCGGGSC
T ss_pred             CCCCEEECCCCCch-------hhcchhhhcCCCCC-EEeCCCCCc---hhhccHHHhhccCceEEeCCHHHHH
Confidence            99999999887654       44555677888887 788875433   4567788999999999999877654

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=99.72  E-value=6e-17  Score=140.41  Aligned_cols=190  Identities=20%  Similarity=0.193  Sum_probs=116.0

Q ss_pred             ccCCceEEEeecCCCCCCc-hhhhcCCCCcEEEeccCCCCCCCcCccchhhhcCCCCCcEEEeecccCCcc-Cccc-Ccc
Q 039475           35 CQEKLRHLTLMLGLPTKFP-VSIFDAKKLRSLSLFYDSKGQSAASPVLQGLFDQLTCLRALKIEELWYGDQ-TIEI-PKG  111 (286)
Q Consensus        35 ~~~~~r~ls~~~~~~~~~~-~~~~~l~~Lr~L~l~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~-i~~l-P~~  111 (286)
                      .+.+++++.+..+.+..++ ..+..+++|++|++.++.....     .+..|.+++.|++|++++    +. +..+ |..
T Consensus        30 ~~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~-----~~~~~~~l~~L~~L~l~~----n~~l~~~~~~~  100 (285)
T 1ozn_A           30 IPAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARI-----DAAAFTGLALLEQLDLSD----NAQLRSVDPAT  100 (285)
T ss_dssp             CCTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEE-----CTTTTTTCTTCCEEECCS----CTTCCCCCTTT
T ss_pred             CCCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCcccee-----CHhhcCCccCCCEEeCCC----CCCccccCHHH
Confidence            4668899999988886655 4678899999999999876532     577788999999999999    86 7777 678


Q ss_pred             ccCCCCCcEEeccc--ccccCCC--CCC----------CCCccccc-ccccccCCCEEEecCCCccccccc-cccccccc
Q 039475          112 LENLIHLRYLKLSA--VEELSET--CYC----------PSLKRLPQ-GRGKLINLRHLIFDKDYLAYMANG-FERLTSLR  175 (286)
Q Consensus       112 i~~L~~Lr~L~L~~--~~~LP~~--~~~----------~~l~~LP~-~i~~L~~L~~L~l~~~~~~~lP~~-i~~L~~L~  175 (286)
                      ++.+.+|++|++++  +..++..  ..+          +.+..+|. .++++++|++|++++|.+..+|.. ++.+++|+
T Consensus       101 ~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~  180 (285)
T 1ozn_A          101 FHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLD  180 (285)
T ss_dssp             TTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCC
T ss_pred             hcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCcccccCHHHhcCccccC
Confidence            89999999999987  4333222  111          22333333 245555555555555555555443 55555555


Q ss_pred             ccccccccccCCccCCCCCCcccccCcccccceeEEcccCCcccchhhhhhcCCCCCCceEEEEeCCCC
Q 039475          176 TLSGFTVARVGGKYSSEACNLEGLRNLNHLRQFLRICGLGNLQMRLKINAHLEKKKNLVHLTLDFDKGE  244 (286)
Q Consensus       176 ~L~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~~L~i~~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~  244 (286)
                      +|++..+...       ......+..+++|+ .|.+.+..-   ....+..+..+++|+.|+++.|...
T Consensus       181 ~L~l~~n~l~-------~~~~~~~~~l~~L~-~L~l~~n~l---~~~~~~~~~~l~~L~~L~l~~N~~~  238 (285)
T 1ozn_A          181 RLLLHQNRVA-------HVHPHAFRDLGRLM-TLYLFANNL---SALPTEALAPLRALQYLRLNDNPWV  238 (285)
T ss_dssp             EEECCSSCCC-------EECTTTTTTCTTCC-EEECCSSCC---SCCCHHHHTTCTTCCEEECCSSCEE
T ss_pred             EEECCCCccc-------ccCHhHccCccccc-EeeCCCCcC---CcCCHHHcccCcccCEEeccCCCcc
Confidence            5555544322       12223344444444 454443211   1122233555556666666655544

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=99.71  E-value=4e-17  Score=150.71  Aligned_cols=189  Identities=22%  Similarity=0.193  Sum_probs=143.0

Q ss_pred             ccCCceEEEeecCCCCCC-chhhhcCCCCcEEEeccCCCCCCCcCccchhhhcCCCCCcEEEeecccCCccCcccCcc-c
Q 039475           35 CQEKLRHLTLMLGLPTKF-PVSIFDAKKLRSLSLFYDSKGQSAASPVLQGLFDQLTCLRALKIEELWYGDQTIEIPKG-L  112 (286)
Q Consensus        35 ~~~~~r~ls~~~~~~~~~-~~~~~~l~~Lr~L~l~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~i~~lP~~-i  112 (286)
                      ++.+++.|.+..+.+..+ +..|..+++|+.|++++|.....     .+..|.++++|++|+|++    |.+..+|.. +
T Consensus        73 ~~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~-----~~~~~~~l~~L~~L~L~~----n~l~~~~~~~~  143 (452)
T 3zyi_A           73 IPSNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQI-----EVGAFNGLASLNTLELFD----NWLTVIPSGAF  143 (452)
T ss_dssp             CCTTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEE-----CTTTTTTCTTCCEEECCS----SCCSBCCTTTS
T ss_pred             CCCCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCc-----ChhhccCcccCCEEECCC----CcCCccChhhh
Confidence            456789999999888554 56788999999999999976542     667889999999999999    999988865 8


Q ss_pred             cCCCCCcEEeccc--ccccCCC-C------------CCCCCccccc-ccccccCCCEEEecCCCcccccccccccccccc
Q 039475          113 ENLIHLRYLKLSA--VEELSET-C------------YCPSLKRLPQ-GRGKLINLRHLIFDKDYLAYMANGFERLTSLRT  176 (286)
Q Consensus       113 ~~L~~Lr~L~L~~--~~~LP~~-~------------~~~~l~~LP~-~i~~L~~L~~L~l~~~~~~~lP~~i~~L~~L~~  176 (286)
                      +.+.+|++|+|++  +..+|.. +            +|+.+..+|. .+.++++|++|++++|.+..+| .+..+++|++
T Consensus       144 ~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~-~~~~l~~L~~  222 (452)
T 3zyi_A          144 EYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDMP-NLTPLVGLEE  222 (452)
T ss_dssp             SSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSSCC-CCTTCTTCCE
T ss_pred             cccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCcccccc-cccccccccE
Confidence            8999999999998  7777764 3            3455566665 4788888888888888888876 5788888888


Q ss_pred             cccccccccCCccCCCCCCcccccCcccccceeEEcccCCcccchhhhhhcCCCCCCceEEEEeCCCC
Q 039475          177 LSGFTVARVGGKYSSEACNLEGLRNLNHLRQFLRICGLGNLQMRLKINAHLEKKKNLVHLTLDFDKGE  244 (286)
Q Consensus       177 L~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~~L~i~~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~  244 (286)
                      |++..+...       ......+.++++|+ .|.+.+..-   ....+..+..+++|+.|+|+.|+..
T Consensus       223 L~Ls~N~l~-------~~~~~~~~~l~~L~-~L~L~~n~l---~~~~~~~~~~l~~L~~L~L~~N~l~  279 (452)
T 3zyi_A          223 LEMSGNHFP-------EIRPGSFHGLSSLK-KLWVMNSQV---SLIERNAFDGLASLVELNLAHNNLS  279 (452)
T ss_dssp             EECTTSCCS-------EECGGGGTTCTTCC-EEECTTSCC---CEECTTTTTTCTTCCEEECCSSCCS
T ss_pred             EECcCCcCc-------ccCcccccCccCCC-EEEeCCCcC---ceECHHHhcCCCCCCEEECCCCcCC
Confidence            888776544       33345566777777 677764321   2233455777788888888888776

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=99.71  E-value=4.3e-17  Score=150.02  Aligned_cols=189  Identities=20%  Similarity=0.166  Sum_probs=142.1

Q ss_pred             ccCCceEEEeecCCCCCC-chhhhcCCCCcEEEeccCCCCCCCcCccchhhhcCCCCCcEEEeecccCCccCcccCc-cc
Q 039475           35 CQEKLRHLTLMLGLPTKF-PVSIFDAKKLRSLSLFYDSKGQSAASPVLQGLFDQLTCLRALKIEELWYGDQTIEIPK-GL  112 (286)
Q Consensus        35 ~~~~~r~ls~~~~~~~~~-~~~~~~l~~Lr~L~l~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~i~~lP~-~i  112 (286)
                      ++.+++.+.+..+.+..+ +..+.++++|++|++++|.....     .+..|.++++|++|+|++    |.+..+|. .+
T Consensus        62 ~~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i-----~~~~~~~l~~L~~L~L~~----n~l~~~~~~~~  132 (440)
T 3zyj_A           62 ISTNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTI-----EIGAFNGLANLNTLELFD----NRLTTIPNGAF  132 (440)
T ss_dssp             CCTTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEE-----CGGGGTTCSSCCEEECCS----SCCSSCCTTTS
T ss_pred             CCCCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCcc-----ChhhccCCccCCEEECCC----CcCCeeCHhHh
Confidence            456789999999888655 46788999999999999976532     567889999999999999    99998887 68


Q ss_pred             cCCCCCcEEeccc--ccccCCC-C------------CCCCCccccc-ccccccCCCEEEecCCCcccccccccccccccc
Q 039475          113 ENLIHLRYLKLSA--VEELSET-C------------YCPSLKRLPQ-GRGKLINLRHLIFDKDYLAYMANGFERLTSLRT  176 (286)
Q Consensus       113 ~~L~~Lr~L~L~~--~~~LP~~-~------------~~~~l~~LP~-~i~~L~~L~~L~l~~~~~~~lP~~i~~L~~L~~  176 (286)
                      +.+.+|++|+|++  +..+|.. +            +++.+..+|. .+.++++|++|++++|.+..+| .+..+++|++
T Consensus       133 ~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~-~~~~l~~L~~  211 (440)
T 3zyj_A          133 VYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLREIP-NLTPLIKLDE  211 (440)
T ss_dssp             CSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCSSCC-CCTTCSSCCE
T ss_pred             hccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCcccc-ccCCCcccCE
Confidence            9999999999998  7777765 3            3344555664 5788888999999888888887 4888888888


Q ss_pred             cccccccccCCccCCCCCCcccccCcccccceeEEcccCCcccchhhhhhcCCCCCCceEEEEeCCCC
Q 039475          177 LSGFTVARVGGKYSSEACNLEGLRNLNHLRQFLRICGLGNLQMRLKINAHLEKKKNLVHLTLDFDKGE  244 (286)
Q Consensus       177 L~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~~L~i~~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~  244 (286)
                      |++..+...       ......+..+++|+ .|.+.+..-   ....+..+..+++|+.|+|+.|+.+
T Consensus       212 L~Ls~N~l~-------~~~~~~~~~l~~L~-~L~L~~n~l---~~~~~~~~~~l~~L~~L~L~~N~l~  268 (440)
T 3zyj_A          212 LDLSGNHLS-------AIRPGSFQGLMHLQ-KLWMIQSQI---QVIERNAFDNLQSLVEINLAHNNLT  268 (440)
T ss_dssp             EECTTSCCC-------EECTTTTTTCTTCC-EEECTTCCC---CEECTTSSTTCTTCCEEECTTSCCC
T ss_pred             EECCCCccC-------ccChhhhccCccCC-EEECCCCce---eEEChhhhcCCCCCCEEECCCCCCC
Confidence            888776543       23344566666666 676664311   2233455677788888888887776

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=99.70  E-value=3.9e-17  Score=143.87  Aligned_cols=187  Identities=13%  Similarity=0.118  Sum_probs=150.4

Q ss_pred             cCCceEEEeec-CCC-CCCchhhhcCCCCcEEEeccCCCCCCCcCccchhhhcCCCCCcEEEeecccCCccCc-ccCccc
Q 039475           36 QEKLRHLTLML-GLP-TKFPVSIFDAKKLRSLSLFYDSKGQSAASPVLQGLFDQLTCLRALKIEELWYGDQTI-EIPKGL  112 (286)
Q Consensus        36 ~~~~r~ls~~~-~~~-~~~~~~~~~l~~Lr~L~l~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~i~-~lP~~i  112 (286)
                      ....+++.+.. +.. ..+|..+.++++|++|++.++.....     +|..|.+++.|++|++++    |.+. .+|..+
T Consensus        75 l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~-----~p~~~~~l~~L~~L~Ls~----N~l~~~~p~~~  145 (313)
T 1ogq_A           75 LPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGA-----IPDFLSQIKTLVTLDFSY----NALSGTLPPSI  145 (313)
T ss_dssp             CTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEE-----CCGGGGGCTTCCEEECCS----SEEESCCCGGG
T ss_pred             CCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCc-----CCHHHhCCCCCCEEeCCC----CccCCcCChHH
Confidence            35689999984 655 46788999999999999999986533     788899999999999999    9987 789999


Q ss_pred             cCCCCCcEEeccc--cc-ccCCC-CCCC-CCc-----------ccccccccccCCCEEEecCCCcc-ccccccccccccc
Q 039475          113 ENLIHLRYLKLSA--VE-ELSET-CYCP-SLK-----------RLPQGRGKLINLRHLIFDKDYLA-YMANGFERLTSLR  175 (286)
Q Consensus       113 ~~L~~Lr~L~L~~--~~-~LP~~-~~~~-~l~-----------~LP~~i~~L~~L~~L~l~~~~~~-~lP~~i~~L~~L~  175 (286)
                      +++++|++|++++  +. .+|.. +.+. .++           .+|..++.++ |++|++++|.+. ..|..++++++|+
T Consensus       146 ~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~-L~~L~Ls~N~l~~~~~~~~~~l~~L~  224 (313)
T 1ogq_A          146 SSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRNMLEGDASVLFGSDKNTQ  224 (313)
T ss_dssp             GGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCC-CSEEECCSSEEEECCGGGCCTTSCCS
T ss_pred             hcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCc-ccEEECcCCcccCcCCHHHhcCCCCC
Confidence            9999999999998  55 77877 6443 333           5688899997 999999999988 4566799999999


Q ss_pred             ccccccccccCCccCCCCCCcccccCcccccceeEEcccCCcccchhhhhhcCCCCCCceEEEEeCCCC
Q 039475          176 TLSGFTVARVGGKYSSEACNLEGLRNLNHLRQFLRICGLGNLQMRLKINAHLEKKKNLVHLTLDFDKGE  244 (286)
Q Consensus       176 ~L~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~~L~i~~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~  244 (286)
                      +|++..+...        ..+..+..+++|+ .|.+.+..-   .+..+..+..+++|+.|+|+.|..+
T Consensus       225 ~L~L~~N~l~--------~~~~~~~~l~~L~-~L~Ls~N~l---~~~~p~~l~~l~~L~~L~Ls~N~l~  281 (313)
T 1ogq_A          225 KIHLAKNSLA--------FDLGKVGLSKNLN-GLDLRNNRI---YGTLPQGLTQLKFLHSLNVSFNNLC  281 (313)
T ss_dssp             EEECCSSEEC--------CBGGGCCCCTTCC-EEECCSSCC---EECCCGGGGGCTTCCEEECCSSEEE
T ss_pred             EEECCCCcee--------eecCcccccCCCC-EEECcCCcc---cCcCChHHhcCcCCCEEECcCCccc
Confidence            9999877654        2333466777777 788875422   3456778899999999999999876

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=99.69  E-value=5.8e-17  Score=141.81  Aligned_cols=192  Identities=15%  Similarity=0.079  Sum_probs=131.6

Q ss_pred             ccCCceEEEeecCCCCCCchh-hhcCCCCcEEEeccCCCCCCCcCccchhhhcCCCCCcEEEeecccCCccCcccCcccc
Q 039475           35 CQEKLRHLTLMLGLPTKFPVS-IFDAKKLRSLSLFYDSKGQSAASPVLQGLFDQLTCLRALKIEELWYGDQTIEIPKGLE  113 (286)
Q Consensus        35 ~~~~~r~ls~~~~~~~~~~~~-~~~l~~Lr~L~l~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~i~~lP~~i~  113 (286)
                      .+.+++++.+..+.+..+|.. +.++++|++|++.++.......   .+..+..++.|++|++++    +.+..+|..+.
T Consensus        26 ~~~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~---~~~~~~~~~~L~~L~Ls~----n~i~~l~~~~~   98 (306)
T 2z66_A           26 IPSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGC---CSQSDFGTTSLKYLDLSF----NGVITMSSNFL   98 (306)
T ss_dssp             CCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEE---EEHHHHSCSCCCEEECCS----CSEEEEEEEEE
T ss_pred             CCCCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccC---cccccccccccCEEECCC----CccccChhhcC
Confidence            456899999999988777765 6899999999999987653211   356677899999999999    88888998899


Q ss_pred             CCCCCcEEeccc--ccccCC--C-CCCCCC----------c-ccccccccccCCCEEEecCCCccc--cccccccccccc
Q 039475          114 NLIHLRYLKLSA--VEELSE--T-CYCPSL----------K-RLPQGRGKLINLRHLIFDKDYLAY--MANGFERLTSLR  175 (286)
Q Consensus       114 ~L~~Lr~L~L~~--~~~LP~--~-~~~~~l----------~-~LP~~i~~L~~L~~L~l~~~~~~~--lP~~i~~L~~L~  175 (286)
                      .+.+|++|++++  +..+|.  . ..+.++          . ..|..+.++++|++|++++|.+..  +|..++.+++|+
T Consensus        99 ~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~  178 (306)
T 2z66_A           99 GLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLT  178 (306)
T ss_dssp             TCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCC
T ss_pred             CCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCccccccchhHHhhCcCCC
Confidence            999999999988  666654  2 222222          2 234556777778888877777764  566677777777


Q ss_pred             ccccccccccCCccCCCCCCcccccCcccccceeEEcccCCcccchhhhhhcCCCCCCceEEEEeCCCC
Q 039475          176 TLSGFTVARVGGKYSSEACNLEGLRNLNHLRQFLRICGLGNLQMRLKINAHLEKKKNLVHLTLDFDKGE  244 (286)
Q Consensus       176 ~L~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~~L~i~~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~  244 (286)
                      +|++..+...       ......+..+++|+ .|.+.+..-   .......+..+++|+.|+++.|...
T Consensus       179 ~L~Ls~n~l~-------~~~~~~~~~l~~L~-~L~L~~N~l---~~~~~~~~~~l~~L~~L~L~~N~l~  236 (306)
T 2z66_A          179 FLDLSQCQLE-------QLSPTAFNSLSSLQ-VLNMSHNNF---FSLDTFPYKCLNSLQVLDYSLNHIM  236 (306)
T ss_dssp             EEECTTSCCC-------EECTTTTTTCTTCC-EEECTTSCC---SBCCSGGGTTCTTCCEEECTTSCCC
T ss_pred             EEECCCCCcC-------CcCHHHhcCCCCCC-EEECCCCcc---CccChhhccCcccCCEeECCCCCCc
Confidence            7777666433       22234455566666 666654321   1111234566677777777777665

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=99.67  E-value=1.2e-15  Score=131.34  Aligned_cols=181  Identities=22%  Similarity=0.290  Sum_probs=138.5

Q ss_pred             ccCCceEEEeecCCCCCCch-hhhcCCCCcEEEeccCCCCCCCcCccchhhhcCCCCCcEEEeecccCCccCcccCc-cc
Q 039475           35 CQEKLRHLTLMLGLPTKFPV-SIFDAKKLRSLSLFYDSKGQSAASPVLQGLFDQLTCLRALKIEELWYGDQTIEIPK-GL  112 (286)
Q Consensus        35 ~~~~~r~ls~~~~~~~~~~~-~~~~l~~Lr~L~l~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~i~~lP~-~i  112 (286)
                      ++..+++|.+..+.+..++. .+..+++|++|++.++.....     .+..|.+++.|++|++++    +.+..+|. .+
T Consensus        35 ~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i-----~~~~~~~l~~L~~L~l~~----n~l~~~~~~~~  105 (270)
T 2o6q_A           35 IPADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTL-----PAGIFKELKNLETLWVTD----NKLQALPIGVF  105 (270)
T ss_dssp             CCTTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCC-----CTTTTSSCTTCCEEECCS----SCCCCCCTTTT
T ss_pred             CCCCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCee-----ChhhhcCCCCCCEEECCC----CcCCcCCHhHc
Confidence            45678888888888766654 678889999999988875432     455678889999999998    88888776 45


Q ss_pred             cCCCCCcEEecccccccCCCCCCCCCccccc-ccccccCCCEEEecCCCccccccc-ccccccccccccccccccCCccC
Q 039475          113 ENLIHLRYLKLSAVEELSETCYCPSLKRLPQ-GRGKLINLRHLIFDKDYLAYMANG-FERLTSLRTLSGFTVARVGGKYS  190 (286)
Q Consensus       113 ~~L~~Lr~L~L~~~~~LP~~~~~~~l~~LP~-~i~~L~~L~~L~l~~~~~~~lP~~-i~~L~~L~~L~~~~~~~~~~~~~  190 (286)
                      +.+.+|++|++++          +.+..+|. .++++++|++|++++|.+..+|.+ ++.+++|++|++..+...     
T Consensus       106 ~~l~~L~~L~l~~----------n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-----  170 (270)
T 2o6q_A          106 DQLVNLAELRLDR----------NQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLK-----  170 (270)
T ss_dssp             TTCSSCCEEECCS----------SCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCS-----
T ss_pred             ccccCCCEEECCC----------CccCeeCHHHhCcCcCCCEEECCCCcCCccCHhHccCCcccceeEecCCcCc-----
Confidence            8889999999985          66777765 468999999999999999999876 899999999998877544     


Q ss_pred             CCCCCcccccCcccccceeEEcccCCcccchhhhhhcCCCCCCceEEEEeCCCCC
Q 039475          191 SEACNLEGLRNLNHLRQFLRICGLGNLQMRLKINAHLEKKKNLVHLTLDFDKGED  245 (286)
Q Consensus       191 ~~~~~~~~l~~L~~L~~~L~i~~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~  245 (286)
                        ......+..+++|+ .|.+.+.. +  .......+..+++|+.|+|+.|....
T Consensus       171 --~~~~~~~~~l~~L~-~L~L~~N~-l--~~~~~~~~~~l~~L~~L~l~~N~~~c  219 (270)
T 2o6q_A          171 --RVPEGAFDKLTELK-TLKLDNNQ-L--KRVPEGAFDSLEKLKMLQLQENPWDC  219 (270)
T ss_dssp             --CCCTTTTTTCTTCC-EEECCSSC-C--SCCCTTTTTTCTTCCEEECCSSCBCC
T ss_pred             --EeChhHhccCCCcC-EEECCCCc-C--CcCCHHHhccccCCCEEEecCCCeeC
Confidence              23334467777777 78887541 1  22223457788999999999998653

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=99.67  E-value=6.3e-16  Score=136.70  Aligned_cols=79  Identities=22%  Similarity=0.253  Sum_probs=52.0

Q ss_pred             cCCceEEEeecCCCCCCch-hhhcCCCCcEEEeccCCCCCCCcCccchhhhcCCCCCcEEEeecccCCccCcccCccccC
Q 039475           36 QEKLRHLTLMLGLPTKFPV-SIFDAKKLRSLSLFYDSKGQSAASPVLQGLFDQLTCLRALKIEELWYGDQTIEIPKGLEN  114 (286)
Q Consensus        36 ~~~~r~ls~~~~~~~~~~~-~~~~l~~Lr~L~l~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~i~~lP~~i~~  114 (286)
                      +..++.+.+..+.+..++. .+.++++|++|++.++.....     .|..|.++++|++|++++    +.+..+|..+. 
T Consensus        51 ~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~-----~~~~~~~l~~L~~L~Ls~----n~l~~l~~~~~-  120 (330)
T 1xku_A           51 PPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKI-----SPGAFAPLVKLERLYLSK----NQLKELPEKMP-  120 (330)
T ss_dssp             CTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCB-----CTTTTTTCTTCCEEECCS----SCCSBCCSSCC-
T ss_pred             CCCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCee-----CHHHhcCCCCCCEEECCC----CcCCccChhhc-
Confidence            4566777777776655544 567777777777777765432     466677777777777777    76666665543 


Q ss_pred             CCCCcEEeccc
Q 039475          115 LIHLRYLKLSA  125 (286)
Q Consensus       115 L~~Lr~L~L~~  125 (286)
                       .+|++|++++
T Consensus       121 -~~L~~L~l~~  130 (330)
T 1xku_A          121 -KTLQELRVHE  130 (330)
T ss_dssp             -TTCCEEECCS
T ss_pred             -ccccEEECCC
Confidence             4555555554

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=99.66  E-value=5.7e-16  Score=135.02  Aligned_cols=178  Identities=20%  Similarity=0.114  Sum_probs=129.6

Q ss_pred             ccCCceEEEeecCCCCCC-chhhhcCCCCcEEEeccCCCCCCCcCccchhhhcCCCCCcEEEeecccCCccCcccCcccc
Q 039475           35 CQEKLRHLTLMLGLPTKF-PVSIFDAKKLRSLSLFYDSKGQSAASPVLQGLFDQLTCLRALKIEELWYGDQTIEIPKGLE  113 (286)
Q Consensus        35 ~~~~~r~ls~~~~~~~~~-~~~~~~l~~Lr~L~l~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~i~~lP~~i~  113 (286)
                      ++..++.|.+..+.+..+ +..+..+++|+.|++.++....      ++.. ..++.|++|++++    +.+..+|..++
T Consensus        29 ~~~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~------~~~~-~~l~~L~~L~Ls~----N~l~~l~~~~~   97 (290)
T 1p9a_G           29 LPKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTK------LQVD-GTLPVLGTLDLSH----NQLQSLPLLGQ   97 (290)
T ss_dssp             CCTTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCE------EECC-SCCTTCCEEECCS----SCCSSCCCCTT
T ss_pred             CCCCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCc------ccCC-CCCCcCCEEECCC----CcCCcCchhhc
Confidence            456678888887777544 4567788888888888887543      3332 6778888888888    88888888888


Q ss_pred             CCCCCcEEecccccccCCCCCCCCCcccc-cccccccCCCEEEecCCCccccccc-ccccccccccccccccccCCccCC
Q 039475          114 NLIHLRYLKLSAVEELSETCYCPSLKRLP-QGRGKLINLRHLIFDKDYLAYMANG-FERLTSLRTLSGFTVARVGGKYSS  191 (286)
Q Consensus       114 ~L~~Lr~L~L~~~~~LP~~~~~~~l~~LP-~~i~~L~~L~~L~l~~~~~~~lP~~-i~~L~~L~~L~~~~~~~~~~~~~~  191 (286)
                      .+.+|++|++++          +.++.+| ..|.++++|++|++++|.+..+|.+ |..+++|++|++..+...      
T Consensus        98 ~l~~L~~L~l~~----------N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~------  161 (290)
T 1p9a_G           98 TLPALTVLDVSF----------NRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLT------  161 (290)
T ss_dssp             TCTTCCEEECCS----------SCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCS------
T ss_pred             cCCCCCEEECCC----------CcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEECCCCcCC------
Confidence            888888888875          6677777 4578889999999999888888776 788889999888776544      


Q ss_pred             CCCCcccccCcccccceeEEcccCCcccchhhhhhcCCCCCCceEEEEeCCCCC
Q 039475          192 EACNLEGLRNLNHLRQFLRICGLGNLQMRLKINAHLEKKKNLVHLTLDFDKGED  245 (286)
Q Consensus       192 ~~~~~~~l~~L~~L~~~L~i~~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~  245 (286)
                       ......+..+++|+ .|.+.+..    ...++..+..+.+|+.|+|+.|....
T Consensus       162 -~l~~~~~~~l~~L~-~L~L~~N~----l~~ip~~~~~~~~L~~l~L~~Np~~C  209 (290)
T 1p9a_G          162 -ELPAGLLNGLENLD-TLLLQENS----LYTIPKGFFGSHLLPFAFLHGNPWLC  209 (290)
T ss_dssp             -CCCTTTTTTCTTCC-EEECCSSC----CCCCCTTTTTTCCCSEEECCSCCBCC
T ss_pred             -ccCHHHhcCcCCCC-EEECCCCc----CCccChhhcccccCCeEEeCCCCccC
Confidence             22223356666666 67776431    22445566667789999998887654

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=99.66  E-value=7.7e-16  Score=132.55  Aligned_cols=177  Identities=23%  Similarity=0.261  Sum_probs=139.7

Q ss_pred             CCceEEEeecCCCCCCchhhhcCCCCcEEEeccCCCCCCCcCccchhhhcCCCCCcEEEeecccCCccCcccCccc-cCC
Q 039475           37 EKLRHLTLMLGLPTKFPVSIFDAKKLRSLSLFYDSKGQSAASPVLQGLFDQLTCLRALKIEELWYGDQTIEIPKGL-ENL  115 (286)
Q Consensus        37 ~~~r~ls~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~i~~lP~~i-~~L  115 (286)
                      ...+.+....+....+|..+.  ++++.|++.++.....     .+..|.++++|++|++++    +.+..+|..+ +++
T Consensus        16 ~~~~~l~~~~~~l~~ip~~~~--~~l~~L~l~~n~l~~~-----~~~~~~~l~~L~~L~l~~----n~l~~i~~~~~~~l   84 (270)
T 2o6q_A           16 NNKNSVDCSSKKLTAIPSNIP--ADTKKLDLQSNKLSSL-----PSKAFHRLTKLRLLYLND----NKLQTLPAGIFKEL   84 (270)
T ss_dssp             TTTTEEECTTSCCSSCCSCCC--TTCSEEECCSSCCSCC-----CTTSSSSCTTCCEEECCS----SCCSCCCTTTTSSC
T ss_pred             CCCCEEEccCCCCCccCCCCC--CCCCEEECcCCCCCee-----CHHHhcCCCCCCEEECCC----CccCeeChhhhcCC
Confidence            346778888887777887653  7899999999986542     556789999999999999    9999998765 899


Q ss_pred             CCCcEEecccccccCCCCCCCCCcccccc-cccccCCCEEEecCCCccccccc-ccccccccccccccccccCCccCCCC
Q 039475          116 IHLRYLKLSAVEELSETCYCPSLKRLPQG-RGKLINLRHLIFDKDYLAYMANG-FERLTSLRTLSGFTVARVGGKYSSEA  193 (286)
Q Consensus       116 ~~Lr~L~L~~~~~LP~~~~~~~l~~LP~~-i~~L~~L~~L~l~~~~~~~lP~~-i~~L~~L~~L~~~~~~~~~~~~~~~~  193 (286)
                      ++|++|++++          +.+..+|.. +.++++|++|++++|.+..+|.. |+.+++|++|++..+...       .
T Consensus        85 ~~L~~L~l~~----------n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~-------~  147 (270)
T 2o6q_A           85 KNLETLWVTD----------NKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQ-------S  147 (270)
T ss_dssp             TTCCEEECCS----------SCCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-------C
T ss_pred             CCCCEEECCC----------CcCCcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCC-------c
Confidence            9999999996          678888754 58999999999999999988765 899999999999877644       2


Q ss_pred             CCcccccCcccccceeEEcccCCcccchhhhhhcCCCCCCceEEEEeCCCCC
Q 039475          194 CNLEGLRNLNHLRQFLRICGLGNLQMRLKINAHLEKKKNLVHLTLDFDKGED  245 (286)
Q Consensus       194 ~~~~~l~~L~~L~~~L~i~~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~  245 (286)
                      .....++.+++|+ .|.+.+..-   ....+..+..+++|+.|+|+.|..+.
T Consensus       148 ~~~~~~~~l~~L~-~L~L~~n~l---~~~~~~~~~~l~~L~~L~L~~N~l~~  195 (270)
T 2o6q_A          148 LPKGVFDKLTSLK-ELRLYNNQL---KRVPEGAFDKLTELKTLKLDNNQLKR  195 (270)
T ss_dssp             CCTTTTTTCTTCC-EEECCSSCC---SCCCTTTTTTCTTCCEEECCSSCCSC
T ss_pred             cCHhHccCCcccc-eeEecCCcC---cEeChhHhccCCCcCEEECCCCcCCc
Confidence            3333467777777 788865321   22223457889999999999998763

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=99.66  E-value=3e-16  Score=140.18  Aligned_cols=129  Identities=19%  Similarity=0.181  Sum_probs=91.4

Q ss_pred             ccCCceEEEeecCCCCCCch-hhhcCCCCcEEEeccCCCCCCCcCccchhhhcCCCCCcEEEeecccCCccCcccCcc-c
Q 039475           35 CQEKLRHLTLMLGLPTKFPV-SIFDAKKLRSLSLFYDSKGQSAASPVLQGLFDQLTCLRALKIEELWYGDQTIEIPKG-L  112 (286)
Q Consensus        35 ~~~~~r~ls~~~~~~~~~~~-~~~~l~~Lr~L~l~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~i~~lP~~-i  112 (286)
                      ++..++++.+..+.+..++. .+.++++|++|++.++.....     .+..|.++++|++|++++    +.+..+|.. +
T Consensus        50 ~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~-----~~~~~~~l~~L~~L~Ls~----n~l~~~~~~~~  120 (353)
T 2z80_A           50 LTEAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTI-----EEDSFSSLGSLEHLDLSY----NYLSNLSSSWF  120 (353)
T ss_dssp             CCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEE-----CTTTTTTCTTCCEEECCS----SCCSSCCHHHH
T ss_pred             ccccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCcc-----CHhhcCCCCCCCEEECCC----CcCCcCCHhHh
Confidence            34578999999988876665 688999999999999876532     567789999999999999    999999886 8


Q ss_pred             cCCCCCcEEecccccccCCCCCCCCCccccc--ccccccCCCEEEecCC-Cccccc-ccccccccccccccccc
Q 039475          113 ENLIHLRYLKLSAVEELSETCYCPSLKRLPQ--GRGKLINLRHLIFDKD-YLAYMA-NGFERLTSLRTLSGFTV  182 (286)
Q Consensus       113 ~~L~~Lr~L~L~~~~~LP~~~~~~~l~~LP~--~i~~L~~L~~L~l~~~-~~~~lP-~~i~~L~~L~~L~~~~~  182 (286)
                      +++++|++|++++          +.++.+|.  .++++++|++|++++| .+..++ ..++++++|++|++..+
T Consensus       121 ~~l~~L~~L~L~~----------n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n  184 (353)
T 2z80_A          121 KPLSSLTFLNLLG----------NPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDAS  184 (353)
T ss_dssp             TTCTTCSEEECTT----------CCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEET
T ss_pred             CCCccCCEEECCC----------CCCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCC
Confidence            9999999999987          33444443  3445555555555544 233332 23455555555544443

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=99.65  E-value=5e-16  Score=148.09  Aligned_cols=132  Identities=17%  Similarity=0.158  Sum_probs=108.3

Q ss_pred             ccCCceEEEeecCCCCCCch-hhhcCCCCcEEEeccCCCCCCCcCccchhhhcCCCCCcEEEeecccCCccCccc-Cccc
Q 039475           35 CQEKLRHLTLMLGLPTKFPV-SIFDAKKLRSLSLFYDSKGQSAASPVLQGLFDQLTCLRALKIEELWYGDQTIEI-PKGL  112 (286)
Q Consensus        35 ~~~~~r~ls~~~~~~~~~~~-~~~~l~~Lr~L~l~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~i~~l-P~~i  112 (286)
                      ++..++++.+..+....+++ .+.++++|++|+++++.....     .|..|.++++|++|+|++    +.+..+ |..|
T Consensus        30 ~~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~i-----~~~~~~~l~~L~~L~Ls~----n~l~~~~p~~~  100 (606)
T 3vq2_A           30 IPSSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETI-----EDKAWHGLHHLSNLILTG----NPIQSFSPGSF  100 (606)
T ss_dssp             SCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEE-----CTTTTTTCTTCCEEECTT----CCCCCCCTTSS
T ss_pred             CCCCcCEEECCCCCcCEeChhhccCCccCcEEeCCCCccccc-----CHHHhhchhhcCEeECCC----CcccccChhhc
Confidence            56789999999988865544 788999999999999976532     677899999999999999    998877 7899


Q ss_pred             cCCCCCcEEecccccccCCCCCCCCCcccc-cccccccCCCEEEecCCCcc--ccccccccccccccccccccccc
Q 039475          113 ENLIHLRYLKLSAVEELSETCYCPSLKRLP-QGRGKLINLRHLIFDKDYLA--YMANGFERLTSLRTLSGFTVARV  185 (286)
Q Consensus       113 ~~L~~Lr~L~L~~~~~LP~~~~~~~l~~LP-~~i~~L~~L~~L~l~~~~~~--~lP~~i~~L~~L~~L~~~~~~~~  185 (286)
                      +++++|++|++++          +.+..+| ..++++++|++|++++|.+.  .+|..++++++|++|++..+...
T Consensus       101 ~~l~~L~~L~L~~----------n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~l~  166 (606)
T 3vq2_A          101 SGLTSLENLVAVE----------TKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQ  166 (606)
T ss_dssp             TTCTTCCEEECTT----------SCCCCSSSSCCTTCTTCCEEECCSSCCCCCCCCGGGGTCTTCCEEECCSSCCC
T ss_pred             CCcccCCEEEccC----------CccccccccccCCCCCCCEEeCCCCcccceechHhHhhcCCCCEEEccCCcce
Confidence            9999999999996          5566666 56788888888888888776  46777888888888887766543

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=99.65  E-value=1.3e-15  Score=131.95  Aligned_cols=163  Identities=22%  Similarity=0.264  Sum_probs=123.1

Q ss_pred             cCCceEEEeecCCCCCC-chhhhcCCCCcEEEeccCC-CCCCCcCccchhhhcCCCCCcEEEeecccCCccCccc-Cccc
Q 039475           36 QEKLRHLTLMLGLPTKF-PVSIFDAKKLRSLSLFYDS-KGQSAASPVLQGLFDQLTCLRALKIEELWYGDQTIEI-PKGL  112 (286)
Q Consensus        36 ~~~~r~ls~~~~~~~~~-~~~~~~l~~Lr~L~l~~~~-~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~i~~l-P~~i  112 (286)
                      ..+++++.+..+.+..+ +..+..+++|++|++.++. ....     .+..|..++.|++|++++    +.+..+ |..+
T Consensus        55 ~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~l~~~-----~~~~~~~l~~L~~L~l~~----n~l~~~~~~~~  125 (285)
T 1ozn_A           55 CRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSV-----DPATFHGLGRLHTLHLDR----CGLQELGPGLF  125 (285)
T ss_dssp             CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCC-----CTTTTTTCTTCCEEECTT----SCCCCCCTTTT
T ss_pred             CCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCCcccc-----CHHHhcCCcCCCEEECCC----CcCCEECHhHh
Confidence            35678888888777554 5677888888999888886 3321     466778888888888888    887766 5567


Q ss_pred             cCCCCCcEEeccc--ccccCCC-C-----------CCCCCccccc-ccccccCCCEEEecCCCcccc-cccccccccccc
Q 039475          113 ENLIHLRYLKLSA--VEELSET-C-----------YCPSLKRLPQ-GRGKLINLRHLIFDKDYLAYM-ANGFERLTSLRT  176 (286)
Q Consensus       113 ~~L~~Lr~L~L~~--~~~LP~~-~-----------~~~~l~~LP~-~i~~L~~L~~L~l~~~~~~~l-P~~i~~L~~L~~  176 (286)
                      +++++|++|++++  +..+|.. .           ..+.+..+|. .+.++++|++|++++|.+..+ |..++++++|++
T Consensus       126 ~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~  205 (285)
T 1ozn_A          126 RGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMT  205 (285)
T ss_dssp             TTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCE
T ss_pred             hCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCcccccCHHHhcCccccCEEECCCCcccccCHhHccCcccccE
Confidence            8888888888887  6666654 2           2345667776 489999999999999999976 667999999999


Q ss_pred             cccccccccCCccCCCCCCcccccCcccccceeEEcccC
Q 039475          177 LSGFTVARVGGKYSSEACNLEGLRNLNHLRQFLRICGLG  215 (286)
Q Consensus       177 L~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~~L~i~~l~  215 (286)
                      |++..+...       ......+..+++|+ .|.+.+..
T Consensus       206 L~l~~n~l~-------~~~~~~~~~l~~L~-~L~l~~N~  236 (285)
T 1ozn_A          206 LYLFANNLS-------ALPTEALAPLRALQ-YLRLNDNP  236 (285)
T ss_dssp             EECCSSCCS-------CCCHHHHTTCTTCC-EEECCSSC
T ss_pred             eeCCCCcCC-------cCCHHHcccCcccC-EEeccCCC
Confidence            999887654       33334577788888 78887653

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=99.65  E-value=6.8e-16  Score=151.57  Aligned_cols=90  Identities=12%  Similarity=0.084  Sum_probs=50.3

Q ss_pred             ccccccCCCEEEecCCCcc-cccccccccccccccccccccccCCccCCCCCCcccccCcccccceeEEcccCCcccchh
Q 039475          144 GRGKLINLRHLIFDKDYLA-YMANGFERLTSLRTLSGFTVARVGGKYSSEACNLEGLRNLNHLRQFLRICGLGNLQMRLK  222 (286)
Q Consensus       144 ~i~~L~~L~~L~l~~~~~~-~lP~~i~~L~~L~~L~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~~L~i~~l~~~~~~~~  222 (286)
                      .++++++|+.|++++|.+. .+|..|+++++|+.|++..+...       +..+..+++|++|+ .|.+.+.   .-.+.
T Consensus       627 ~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~-------g~ip~~l~~L~~L~-~LdLs~N---~l~g~  695 (768)
T 3rgz_A          627 TFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDIS-------GSIPDEVGDLRGLN-ILDLSSN---KLDGR  695 (768)
T ss_dssp             SCSSSBCCCEEECCSSCCBSCCCGGGGGCTTCCEEECCSSCCC-------SCCCGGGGGCTTCC-EEECCSS---CCEEC
T ss_pred             hhhccccccEEECcCCcccccCCHHHhccccCCEEeCcCCccC-------CCCChHHhCCCCCC-EEECCCC---cccCc
Confidence            3444556666666666655 45555666666666666555443       34445555555555 5555432   11344


Q ss_pred             hhhhcCCCCCCceEEEEeCCCC
Q 039475          223 INAHLEKKKNLVHLTLDFDKGE  244 (286)
Q Consensus       223 ~~~~l~~l~~L~~L~L~~~~~~  244 (286)
                      ++..+..++.|++|+|++|+..
T Consensus       696 ip~~l~~l~~L~~L~ls~N~l~  717 (768)
T 3rgz_A          696 IPQAMSALTMLTEIDLSNNNLS  717 (768)
T ss_dssp             CCGGGGGCCCCSEEECCSSEEE
T ss_pred             CChHHhCCCCCCEEECcCCccc
Confidence            5555666666666666666554

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=99.65  E-value=3.2e-16  Score=135.19  Aligned_cols=190  Identities=16%  Similarity=0.130  Sum_probs=115.4

Q ss_pred             ccCCceEEEeecCCCCCCch-hhhcCCCCcEEEeccCCCCCCCcCccchhhhcCCCCCcEEEeecccCCccCcccC-ccc
Q 039475           35 CQEKLRHLTLMLGLPTKFPV-SIFDAKKLRSLSLFYDSKGQSAASPVLQGLFDQLTCLRALKIEELWYGDQTIEIP-KGL  112 (286)
Q Consensus        35 ~~~~~r~ls~~~~~~~~~~~-~~~~l~~Lr~L~l~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~i~~lP-~~i  112 (286)
                      ++..++++.+..+.+..++. .+.++++|++|++.++.....     .+..|.++++|++|++++    +.+..++ ..+
T Consensus        26 l~~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~-----~~~~~~~l~~L~~L~L~~----n~l~~~~~~~~   96 (276)
T 2z62_A           26 LPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTI-----EDGAYQSLSHLSTLILTG----NPIQSLALGAF   96 (276)
T ss_dssp             SCTTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEE-----CTTTTTTCTTCCEEECTT----CCCCEECTTTT
T ss_pred             CCCCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCcc-----CHHHccCCcCCCEEECCC----CccCccChhhh
Confidence            46679999999988866654 788899999999999976532     556789999999999999    9988776 578


Q ss_pred             cCCCCCcEEeccc--ccccCCC--C----------CCCCCcc--cccccccccCCCEEEecCCCcccccc-ccccccccc
Q 039475          113 ENLIHLRYLKLSA--VEELSET--C----------YCPSLKR--LPQGRGKLINLRHLIFDKDYLAYMAN-GFERLTSLR  175 (286)
Q Consensus       113 ~~L~~Lr~L~L~~--~~~LP~~--~----------~~~~l~~--LP~~i~~L~~L~~L~l~~~~~~~lP~-~i~~L~~L~  175 (286)
                      +++.+|++|++++  +..++..  .          ..+.+..  +|..++++++|++|++++|.+..+|. .++.+++|+
T Consensus        97 ~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~  176 (276)
T 2z62_A           97 SGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMP  176 (276)
T ss_dssp             TTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCT
T ss_pred             cCCccccEEECCCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcCCHHHhhhhhhcc
Confidence            9999999999987  4444332  1          1122222  34555555555555555555554432 244444444


Q ss_pred             ----ccccccccccCCccCCCCCCcccccCcccccceeEEcccCCcccchhhhhhcCCCCCCceEEEEeCCCCC
Q 039475          176 ----TLSGFTVARVGGKYSSEACNLEGLRNLNHLRQFLRICGLGNLQMRLKINAHLEKKKNLVHLTLDFDKGED  245 (286)
Q Consensus       176 ----~L~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~~L~i~~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~  245 (286)
                          +|++..+...       ... .......+|+ .|.+.+.. +  .......+..+++|+.|+++.|....
T Consensus       177 ~l~l~L~ls~n~l~-------~~~-~~~~~~~~L~-~L~L~~n~-l--~~~~~~~~~~l~~L~~L~l~~N~~~c  238 (276)
T 2z62_A          177 LLNLSLDLSLNPMN-------FIQ-PGAFKEIRLK-ELALDTNQ-L--KSVPDGIFDRLTSLQKIWLHTNPWDC  238 (276)
T ss_dssp             TCCEEEECCSSCCC-------EEC-TTSSCSCCEE-EEECCSSC-C--SCCCTTTTTTCCSCCEEECCSSCBCC
T ss_pred             ccceeeecCCCccc-------ccC-ccccCCCccc-EEECCCCc-e--eecCHhHhcccccccEEEccCCcccc
Confidence                2333222211       000 1111111344 45554321 1  11122345677888888888887764

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=99.64  E-value=1.8e-15  Score=148.58  Aligned_cols=178  Identities=21%  Similarity=0.245  Sum_probs=118.7

Q ss_pred             CCceEEEeecCCCC-CCchhhhcCCCCcEEEeccCCCCCCCcCccchhhhcCCCCCcEEEeecccCCccCc-ccCccccC
Q 039475           37 EKLRHLTLMLGLPT-KFPVSIFDAKKLRSLSLFYDSKGQSAASPVLQGLFDQLTCLRALKIEELWYGDQTI-EIPKGLEN  114 (286)
Q Consensus        37 ~~~r~ls~~~~~~~-~~~~~~~~l~~Lr~L~l~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~i~-~lP~~i~~  114 (286)
                      .+.+.+.+..+... .+|..+..+++|++|++.+|.....     +|..|.+++.|++|++++    |.+. .+|..+++
T Consensus       442 ~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~-----~p~~l~~l~~L~~L~L~~----N~l~~~~p~~~~~  512 (768)
T 3rgz_A          442 SKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGE-----IPSGLSNCTNLNWISLSN----NRLTGEIPKWIGR  512 (768)
T ss_dssp             TTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSC-----CCGGGGGCTTCCEEECCS----SCCCSCCCGGGGG
T ss_pred             CCCCEEECCCCcccCcCCHHHcCCCCceEEEecCCcccCc-----CCHHHhcCCCCCEEEccC----CccCCcCChHHhc
Confidence            46777887777763 5677777788888888888776543     667777778888888877    7766 67777777


Q ss_pred             CCCCcEEecccccccCCCCCCCCCc-ccccccccccCCCEEEecCCCcc-ccccc-------------------------
Q 039475          115 LIHLRYLKLSAVEELSETCYCPSLK-RLPQGRGKLINLRHLIFDKDYLA-YMANG-------------------------  167 (286)
Q Consensus       115 L~~Lr~L~L~~~~~LP~~~~~~~l~-~LP~~i~~L~~L~~L~l~~~~~~-~lP~~-------------------------  167 (286)
                      +++|++|++++          +.+. .+|..++++++|+.|++++|.+. .+|.+                         
T Consensus       513 l~~L~~L~L~~----------N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~  582 (768)
T 3rgz_A          513 LENLAILKLSN----------NSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDG  582 (768)
T ss_dssp             CTTCCEEECCS----------SCCEEECCGGGGGCTTCCEEECCSSEEESBCCGGGGTTTTCBCCSTTCSCEEEEEECCS
T ss_pred             CCCCCEEECCC----------CcccCcCCHHHcCCCCCCEEECCCCccCCcCChHHhcccchhhhhcccccccccccccc
Confidence            77788887775          3343 56667777777777777666554 44433                         


Q ss_pred             ---------------------------------------------ccccccccccccccccccCCccCCCCCCcccccCc
Q 039475          168 ---------------------------------------------FERLTSLRTLSGFTVARVGGKYSSEACNLEGLRNL  202 (286)
Q Consensus       168 ---------------------------------------------i~~L~~L~~L~~~~~~~~~~~~~~~~~~~~~l~~L  202 (286)
                                                                   ++.+++|+.|++..+...       +.....++++
T Consensus       583 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l~-------g~ip~~l~~l  655 (768)
T 3rgz_A          583 MKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLS-------GYIPKEIGSM  655 (768)
T ss_dssp             CCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCCEEECCSSCCB-------SCCCGGGGGC
T ss_pred             ccccccccccccccccccchhhhccccccccccccceecccCchhhhccccccEEECcCCccc-------ccCCHHHhcc
Confidence                                                         233455666666665543       4555566677


Q ss_pred             ccccceeEEcccCCcccchhhhhhcCCCCCCceEEEEeCCCC
Q 039475          203 NHLRQFLRICGLGNLQMRLKINAHLEKKKNLVHLTLDFDKGE  244 (286)
Q Consensus       203 ~~L~~~L~i~~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~  244 (286)
                      +.|+ .|.+.+..   -.+.++..++.+++|+.|+|+.|+..
T Consensus       656 ~~L~-~L~Ls~N~---l~g~ip~~l~~L~~L~~LdLs~N~l~  693 (768)
T 3rgz_A          656 PYLF-ILNLGHND---ISGSIPDEVGDLRGLNILDLSSNKLD  693 (768)
T ss_dssp             TTCC-EEECCSSC---CCSCCCGGGGGCTTCCEEECCSSCCE
T ss_pred             ccCC-EEeCcCCc---cCCCCChHHhCCCCCCEEECCCCccc
Confidence            7666 66665431   14456667777777777777777765

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=99.64  E-value=2.9e-15  Score=131.61  Aligned_cols=122  Identities=18%  Similarity=0.215  Sum_probs=81.1

Q ss_pred             cCCceEEEeecCCCCCCchhhhcCCCCcEEEeccCCCCCCCcCccchhhhcCCCCCcEEEeecccCCccCcccCccccCC
Q 039475           36 QEKLRHLTLMLGLPTKFPVSIFDAKKLRSLSLFYDSKGQSAASPVLQGLFDQLTCLRALKIEELWYGDQTIEIPKGLENL  115 (286)
Q Consensus        36 ~~~~r~ls~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~i~~lP~~i~~L  115 (286)
                      ..+++++.+..+.+..++ .+..+++|++|+++++....      ++. +..+++|++|++++    +.+..+| .++.+
T Consensus        40 l~~L~~L~l~~~~i~~l~-~~~~l~~L~~L~L~~n~i~~------~~~-~~~l~~L~~L~L~~----n~l~~~~-~~~~l  106 (308)
T 1h6u_A           40 LDGITTLSAFGTGVTTIE-GVQYLNNLIGLELKDNQITD------LAP-LKNLTKITELELSG----NPLKNVS-AIAGL  106 (308)
T ss_dssp             HHTCCEEECTTSCCCCCT-TGGGCTTCCEEECCSSCCCC------CGG-GTTCCSCCEEECCS----CCCSCCG-GGTTC
T ss_pred             cCCcCEEEeeCCCccCch-hhhccCCCCEEEccCCcCCC------Chh-HccCCCCCEEEccC----CcCCCch-hhcCC
Confidence            356788888877776655 57778888888888886543      344 77888888888888    8877765 68888


Q ss_pred             CCCcEEecccccccCCCCCCCCCcccccccccccCCCEEEecCCCcccccccccccccccccccccc
Q 039475          116 IHLRYLKLSAVEELSETCYCPSLKRLPQGRGKLINLRHLIFDKDYLAYMANGFERLTSLRTLSGFTV  182 (286)
Q Consensus       116 ~~Lr~L~L~~~~~LP~~~~~~~l~~LP~~i~~L~~L~~L~l~~~~~~~lP~~i~~L~~L~~L~~~~~  182 (286)
                      .+|++|++++          +.+..+|. ++++++|++|++++|.+..+|. ++.+++|++|++..+
T Consensus       107 ~~L~~L~l~~----------n~l~~~~~-l~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~l~~n  161 (308)
T 1h6u_A          107 QSIKTLDLTS----------TQITDVTP-LAGLSNLQVLYLDLNQITNISP-LAGLTNLQYLSIGNA  161 (308)
T ss_dssp             TTCCEEECTT----------SCCCCCGG-GTTCTTCCEEECCSSCCCCCGG-GGGCTTCCEEECCSS
T ss_pred             CCCCEEECCC----------CCCCCchh-hcCCCCCCEEECCCCccCcCcc-ccCCCCccEEEccCC
Confidence            8888888876          33444443 5555555555555555554443 555555555554444

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=99.64  E-value=2.7e-15  Score=139.15  Aligned_cols=163  Identities=21%  Similarity=0.194  Sum_probs=119.6

Q ss_pred             ccCCceEEEeecCCCCCC-chhhhcCCCCcEEEeccCCCCCCCcCccchhhhcCCCCCcEEEeecccCCccCcccCcc-c
Q 039475           35 CQEKLRHLTLMLGLPTKF-PVSIFDAKKLRSLSLFYDSKGQSAASPVLQGLFDQLTCLRALKIEELWYGDQTIEIPKG-L  112 (286)
Q Consensus        35 ~~~~~r~ls~~~~~~~~~-~~~~~~l~~Lr~L~l~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~i~~lP~~-i  112 (286)
                      ++..++.|.+..+.+..+ +..+.++++|++|++.++.....     .|..|.++++|++|+|++    +.+..+|.. +
T Consensus        30 ~~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~-----~~~~~~~l~~L~~L~L~~----n~l~~~~~~~~  100 (477)
T 2id5_A           30 IPTETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAV-----EPGAFNNLFNLRTLGLRS----NRLKLIPLGVF  100 (477)
T ss_dssp             CCTTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEE-----CTTTTTTCTTCCEEECCS----SCCCSCCTTSS
T ss_pred             CCCCCcEEECCCCccceECHhHccCCCCCCEEECCCCccCEe-----ChhhhhCCccCCEEECCC----CcCCccCcccc
Confidence            567899999999988655 56788999999999999976542     678899999999999999    999998874 6


Q ss_pred             cCCCCCcEEeccc--ccccCCC--CCCCCCc----------cc-ccccccccCCCEEEecCCCccccccc-ccccccccc
Q 039475          113 ENLIHLRYLKLSA--VEELSET--CYCPSLK----------RL-PQGRGKLINLRHLIFDKDYLAYMANG-FERLTSLRT  176 (286)
Q Consensus       113 ~~L~~Lr~L~L~~--~~~LP~~--~~~~~l~----------~L-P~~i~~L~~L~~L~l~~~~~~~lP~~-i~~L~~L~~  176 (286)
                      +++.+|++|+|++  +..++..  ..+.+++          .+ |..+.++++|++|++++|.+..+|.. ++++++|+.
T Consensus       101 ~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~  180 (477)
T 2id5_A          101 TGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIV  180 (477)
T ss_dssp             TTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSSCCHHHHTTCTTCCE
T ss_pred             cCCCCCCEEECCCCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCcccChhHhcccCCCcE
Confidence            9999999999998  5555433  3333333          33 45677788888888888877777654 777888888


Q ss_pred             cccccccccCCccCCCCCCcccccCcccccceeEEccc
Q 039475          177 LSGFTVARVGGKYSSEACNLEGLRNLNHLRQFLRICGL  214 (286)
Q Consensus       177 L~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~~L~i~~l  214 (286)
                      |++..+...       ......+..+++|+ .|.+.+.
T Consensus       181 L~l~~n~i~-------~~~~~~~~~l~~L~-~L~l~~~  210 (477)
T 2id5_A          181 LRLRHLNIN-------AIRDYSFKRLYRLK-VLEISHW  210 (477)
T ss_dssp             EEEESCCCC-------EECTTCSCSCTTCC-EEEEECC
T ss_pred             EeCCCCcCc-------EeChhhcccCcccc-eeeCCCC
Confidence            877665433       22223455556666 6666543

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=99.64  E-value=1e-15  Score=138.44  Aligned_cols=128  Identities=19%  Similarity=0.182  Sum_probs=90.2

Q ss_pred             cCCceEEEeecCCCCCCchh-hhcCCCCcEEEeccCCCCCCCcCccchhhhcCCCCCcEEEeecccCCccCcccCc-ccc
Q 039475           36 QEKLRHLTLMLGLPTKFPVS-IFDAKKLRSLSLFYDSKGQSAASPVLQGLFDQLTCLRALKIEELWYGDQTIEIPK-GLE  113 (286)
Q Consensus        36 ~~~~r~ls~~~~~~~~~~~~-~~~l~~Lr~L~l~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~i~~lP~-~i~  113 (286)
                      ..+++++.+..+.+..+|.. +..+++|++|++.++.....     .+..|..+++|++|++++    +.+..+|. .++
T Consensus        44 l~~l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n~i~~~-----~~~~~~~l~~L~~L~L~~----n~l~~~~~~~~~  114 (390)
T 3o6n_A           44 LNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEI-----DTYAFAYAHTIQKLYMGF----NAIRYLPPHVFQ  114 (390)
T ss_dssp             GCCCSEEEEESCEESEECTHHHHHCCCCSEEECTTSCCCEE-----CTTTTTTCTTCCEEECCS----SCCCCCCTTTTT
T ss_pred             cCCceEEEecCCchhhCChhHhcccccCcEEECCCCccccc-----ChhhccCCCCcCEEECCC----CCCCcCCHHHhc
Confidence            36789999998888777765 57899999999999876532     556789999999999999    99887754 589


Q ss_pred             CCCCCcEEecccccccCCCCCCCCCccccccc-ccccCCCEEEecCCCccccccc-ccccccccccccccc
Q 039475          114 NLIHLRYLKLSAVEELSETCYCPSLKRLPQGR-GKLINLRHLIFDKDYLAYMANG-FERLTSLRTLSGFTV  182 (286)
Q Consensus       114 ~L~~Lr~L~L~~~~~LP~~~~~~~l~~LP~~i-~~L~~L~~L~l~~~~~~~lP~~-i~~L~~L~~L~~~~~  182 (286)
                      ++++|++|++++          +.+..+|..+ +++++|++|++++|.+..+++. ++++++|++|++..+
T Consensus       115 ~l~~L~~L~L~~----------n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n  175 (390)
T 3o6n_A          115 NVPLLTVLVLER----------NDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSN  175 (390)
T ss_dssp             TCTTCCEEECCS----------SCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSS
T ss_pred             CCCCCCEEECCC----------CccCcCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCC
Confidence            999999999987          3444555442 4555555555555555544332 555555555544433

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=99.63  E-value=1.8e-16  Score=152.54  Aligned_cols=190  Identities=14%  Similarity=0.089  Sum_probs=143.4

Q ss_pred             CCceEEEeecCCC-CCCchhhhcCCCCcEEEeccCCC------CC-----------------------------------
Q 039475           37 EKLRHLTLMLGLP-TKFPVSIFDAKKLRSLSLFYDSK------GQ-----------------------------------   74 (286)
Q Consensus        37 ~~~r~ls~~~~~~-~~~~~~~~~l~~Lr~L~l~~~~~------~~-----------------------------------   74 (286)
                      .+++.+.+..+.. ..+|+.+.++++||+|++++|..      ..                                   
T Consensus        81 ~~V~~L~L~~~~l~g~lp~~l~~L~~L~~L~Ls~N~~~~~~~~~~~~~~~~~~~~~~~~~l~l~l~~~~l~~~~~~~~~~  160 (636)
T 4eco_A           81 GRVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQKQKMRMHYQKTFVDYDPREDFSD  160 (636)
T ss_dssp             CCEEEEECTTSCCEEEECGGGGGCTTCCEEESCCGGGGGTCCSBSTTSBCTTCCHHHHHHHHTHHHHHHTCCCGGGGSCH
T ss_pred             CCEEEEEecCcccCCcCChHHhcCccceEEECcCCccccCCccccccccccCchHHHHHHHHhhHHHhhhccCchhhHHH
Confidence            4688888888777 46789999999999999998842      00                                   


Q ss_pred             --------------------------------CCcCccchhhhcCCCCCcEEEeecccCCccCcc---------------
Q 039475           75 --------------------------------SAASPVLQGLFDQLTCLRALKIEELWYGDQTIE---------------  107 (286)
Q Consensus        75 --------------------------------~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~i~~---------------  107 (286)
                                                      ..+.. +|..|+++++|++|+|++    +.+..               
T Consensus       161 ~~~~l~~~~l~~~~~~~~~~~~l~~l~l~~~~n~l~~-ip~~l~~l~~L~~L~Ls~----n~l~~~~~~~~~~~~~~~~~  235 (636)
T 4eco_A          161 LIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNNITF-VSKAVMRLTKLRQFYMGN----SPFVAENICEAWENENSEYA  235 (636)
T ss_dssp             HHHHHHHHCTTSCCCCCCCCCCCCTTTTTCCSCEEEE-ECGGGGGCTTCCEEEEES----CCCCGGGBSSSCSCTTSHHH
T ss_pred             HHHHHhhcCccccccccccccchhhhhhccccCCCcc-CCHHHhcccCCCEEECcC----Cccccccccccccccccchh
Confidence                                            01111 677899999999999999    99887               


Q ss_pred             ---cCcccc--CCCCCcEEeccc---ccccCCC-CCC----------CC-Cc--ccccccccc------cCCCEEEecCC
Q 039475          108 ---IPKGLE--NLIHLRYLKLSA---VEELSET-CYC----------PS-LK--RLPQGRGKL------INLRHLIFDKD  159 (286)
Q Consensus       108 ---lP~~i~--~L~~Lr~L~L~~---~~~LP~~-~~~----------~~-l~--~LP~~i~~L------~~L~~L~l~~~  159 (286)
                         +|++++  ++++|++|++++   .+.+|.. +.+          +. +.  .+|..+++|      ++|++|++++|
T Consensus       236 ~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n  315 (636)
T 4eco_A          236 QQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYN  315 (636)
T ss_dssp             HHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSS
T ss_pred             cccCchhhhhcccCCCCEEEecCCcCCccChHHHhcCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCC
Confidence               999999  999999999998   5678876 522          22 44  488888887      89999999999


Q ss_pred             Ccccccc--cccccccccccccccccccCCccCCCCCCcccccCcccccceeEEcccCCcccchhhhhhcCCCCC-CceE
Q 039475          160 YLAYMAN--GFERLTSLRTLSGFTVARVGGKYSSEACNLEGLRNLNHLRQFLRICGLGNLQMRLKINAHLEKKKN-LVHL  236 (286)
Q Consensus       160 ~~~~lP~--~i~~L~~L~~L~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~~L~i~~l~~~~~~~~~~~~l~~l~~-L~~L  236 (286)
                      .+..+|.  .++++++|++|++..+...       +... .++.+++|+ .|.+.+..    ...++..+..+++ |+.|
T Consensus       316 ~l~~ip~~~~l~~l~~L~~L~L~~N~l~-------g~ip-~~~~l~~L~-~L~L~~N~----l~~lp~~l~~l~~~L~~L  382 (636)
T 4eco_A          316 NLKTFPVETSLQKMKKLGMLECLYNQLE-------GKLP-AFGSEIKLA-SLNLAYNQ----ITEIPANFCGFTEQVENL  382 (636)
T ss_dssp             CCSSCCCHHHHTTCTTCCEEECCSCCCE-------EECC-CCEEEEEES-EEECCSSE----EEECCTTSEEECTTCCEE
T ss_pred             cCCccCchhhhccCCCCCEEeCcCCcCc-------cchh-hhCCCCCCC-EEECCCCc----cccccHhhhhhcccCcEE
Confidence            8888988  7999999999988776543       1222 666667676 67665321    1245556777777 8888


Q ss_pred             EEEeCCCC
Q 039475          237 TLDFDKGE  244 (286)
Q Consensus       237 ~L~~~~~~  244 (286)
                      +++.|..+
T Consensus       383 ~Ls~N~l~  390 (636)
T 4eco_A          383 SFAHNKLK  390 (636)
T ss_dssp             ECCSSCCS
T ss_pred             EccCCcCc
Confidence            88777765

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=99.63  E-value=4.4e-15  Score=126.42  Aligned_cols=174  Identities=20%  Similarity=0.190  Sum_probs=97.9

Q ss_pred             ceEEEeecCCCCCCchhhhcCCCCcEEEeccCCCCCCCcCccchhhhcCCCCCcEEEeecccCCccCcccCc-cccCCCC
Q 039475           39 LRHLTLMLGLPTKFPVSIFDAKKLRSLSLFYDSKGQSAASPVLQGLFDQLTCLRALKIEELWYGDQTIEIPK-GLENLIH  117 (286)
Q Consensus        39 ~r~ls~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~i~~lP~-~i~~L~~  117 (286)
                      .+++....+....+|..+.  ++++.|++.++.....     .+..|.+++.|++|+|++    +.+..++. .++++.+
T Consensus        16 ~~~l~~~~~~l~~~p~~~~--~~l~~L~L~~n~l~~~-----~~~~~~~l~~L~~L~L~~----n~l~~~~~~~~~~l~~   84 (251)
T 3m19_A           16 KKEVDCQGKSLDSVPSGIP--ADTEKLDLQSTGLATL-----SDATFRGLTKLTWLNLDY----NQLQTLSAGVFDDLTE   84 (251)
T ss_dssp             GTEEECTTCCCSSCCSCCC--TTCCEEECTTSCCCCC-----CTTTTTTCTTCCEEECTT----SCCCCCCTTTTTTCTT
T ss_pred             CeEEecCCCCccccCCCCC--CCCCEEEccCCCcCcc-----CHhHhcCcccCCEEECCC----CcCCccCHhHhccCCc
Confidence            3455555555555555443  4666666666654432     444566666666666666    66665443 3566666


Q ss_pred             CcEEecccccccCCCCCCCCCccccc-ccccccCCCEEEecCCCccccccc-ccccccccccccccccccCCccCCCCCC
Q 039475          118 LRYLKLSAVEELSETCYCPSLKRLPQ-GRGKLINLRHLIFDKDYLAYMANG-FERLTSLRTLSGFTVARVGGKYSSEACN  195 (286)
Q Consensus       118 Lr~L~L~~~~~LP~~~~~~~l~~LP~-~i~~L~~L~~L~l~~~~~~~lP~~-i~~L~~L~~L~~~~~~~~~~~~~~~~~~  195 (286)
                      |++|++++          +.+..+|. .+..+++|++|++++|.+..+|.+ ++.+++|++|++..+...       ...
T Consensus        85 L~~L~L~~----------n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~-------~~~  147 (251)
T 3m19_A           85 LGTLGLAN----------NQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQ-------SIP  147 (251)
T ss_dssp             CCEEECTT----------SCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-------CCC
T ss_pred             CCEEECCC----------CcccccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCC-------ccC
Confidence            66666664          45555553 346666666666666666666554 566666666666555433       222


Q ss_pred             cccccCcccccceeEEcccCCcccchhhhhhcCCCCCCceEEEEeCCCC
Q 039475          196 LEGLRNLNHLRQFLRICGLGNLQMRLKINAHLEKKKNLVHLTLDFDKGE  244 (286)
Q Consensus       196 ~~~l~~L~~L~~~L~i~~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~  244 (286)
                      ...++.+++|+ .|.+.+..-   ....+..+..+++|+.|+|+.|...
T Consensus       148 ~~~~~~l~~L~-~L~L~~N~l---~~~~~~~~~~l~~L~~L~l~~N~~~  192 (251)
T 3m19_A          148 AGAFDKLTNLQ-TLSLSTNQL---QSVPHGAFDRLGKLQTITLFGNQFD  192 (251)
T ss_dssp             TTTTTTCTTCC-EEECCSSCC---SCCCTTTTTTCTTCCEEECCSCCBC
T ss_pred             HHHcCcCcCCC-EEECCCCcC---CccCHHHHhCCCCCCEEEeeCCcee
Confidence            22345555555 555553211   1112234566667777777766654

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=99.63  E-value=6.2e-15  Score=127.05  Aligned_cols=177  Identities=21%  Similarity=0.220  Sum_probs=138.9

Q ss_pred             cCCceEEEeecCCCCCCchhhhcCCCCcEEEeccCCCCCCCcCccchhhhcCCCCCcEEEeecccCCccCcccCcc-ccC
Q 039475           36 QEKLRHLTLMLGLPTKFPVSIFDAKKLRSLSLFYDSKGQSAASPVLQGLFDQLTCLRALKIEELWYGDQTIEIPKG-LEN  114 (286)
Q Consensus        36 ~~~~r~ls~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~i~~lP~~-i~~  114 (286)
                      ...++.+.+..+....+ +.+..+++|++|++.++....      ++ .+..++.|++|++++    +.+..+|.. +++
T Consensus        40 l~~L~~L~l~~~~i~~~-~~l~~l~~L~~L~l~~n~l~~------~~-~l~~l~~L~~L~L~~----n~l~~~~~~~~~~  107 (272)
T 3rfs_A           40 LNSIDQIIANNSDIKSV-QGIQYLPNVRYLALGGNKLHD------IS-ALKELTNLTYLILTG----NQLQSLPNGVFDK  107 (272)
T ss_dssp             HTTCCEEECTTSCCCCC-TTGGGCTTCCEEECTTSCCCC------CG-GGTTCTTCCEEECTT----SCCCCCCTTTTTT
T ss_pred             ccceeeeeeCCCCcccc-cccccCCCCcEEECCCCCCCC------ch-hhcCCCCCCEEECCC----CccCccChhHhcC
Confidence            46788999988877554 457889999999999998653      33 578999999999999    998887765 699


Q ss_pred             CCCCcEEecccccccCCCCCCCCCcccccc-cccccCCCEEEecCCCccccccc-ccccccccccccccccccCCccCCC
Q 039475          115 LIHLRYLKLSAVEELSETCYCPSLKRLPQG-RGKLINLRHLIFDKDYLAYMANG-FERLTSLRTLSGFTVARVGGKYSSE  192 (286)
Q Consensus       115 L~~Lr~L~L~~~~~LP~~~~~~~l~~LP~~-i~~L~~L~~L~l~~~~~~~lP~~-i~~L~~L~~L~~~~~~~~~~~~~~~  192 (286)
                      +.+|++|++++          +.+..+|.. ++++++|++|++++|.+..+|.+ ++.+++|++|++..+...       
T Consensus       108 l~~L~~L~L~~----------n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-------  170 (272)
T 3rfs_A          108 LTNLKELVLVE----------NQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQ-------  170 (272)
T ss_dssp             CTTCCEEECTT----------SCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-------
T ss_pred             CcCCCEEECCC----------CcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcC-------
Confidence            99999999986          667777765 68999999999999999988776 789999999998877644       


Q ss_pred             CCCcccccCcccccceeEEcccCCcccchhhhhhcCCCCCCceEEEEeCCCCC
Q 039475          193 ACNLEGLRNLNHLRQFLRICGLGNLQMRLKINAHLEKKKNLVHLTLDFDKGED  245 (286)
Q Consensus       193 ~~~~~~l~~L~~L~~~L~i~~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~  245 (286)
                      ......++.+++|+ .|.+.+..-   ....+..+..+++|+.|+++.|....
T Consensus       171 ~~~~~~~~~l~~L~-~L~L~~N~l---~~~~~~~~~~l~~L~~L~l~~N~~~~  219 (272)
T 3rfs_A          171 SLPEGVFDKLTQLK-DLRLYQNQL---KSVPDGVFDRLTSLQYIWLHDNPWDC  219 (272)
T ss_dssp             CCCTTTTTTCTTCC-EEECCSSCC---SCCCTTTTTTCTTCCEEECCSSCBCC
T ss_pred             ccCHHHhcCCccCC-EEECCCCcC---CccCHHHHhCCcCCCEEEccCCCccc
Confidence            33333467777777 787775321   22333557889999999999997753

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=99.62  E-value=2.1e-15  Score=133.54  Aligned_cols=78  Identities=21%  Similarity=0.225  Sum_probs=41.4

Q ss_pred             CCceEEEeecCCCCCC-chhhhcCCCCcEEEeccCCCCCCCcCccchhhhcCCCCCcEEEeecccCCccCcccCccccCC
Q 039475           37 EKLRHLTLMLGLPTKF-PVSIFDAKKLRSLSLFYDSKGQSAASPVLQGLFDQLTCLRALKIEELWYGDQTIEIPKGLENL  115 (286)
Q Consensus        37 ~~~r~ls~~~~~~~~~-~~~~~~l~~Lr~L~l~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~i~~lP~~i~~L  115 (286)
                      ..++.+.+..+.+..+ +..+.++++|++|++.++.....     .|..|.++++|++|++++    +.+..+|..+.  
T Consensus        54 ~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~-----~~~~~~~l~~L~~L~L~~----n~l~~l~~~~~--  122 (332)
T 2ft3_A           54 PDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKI-----HEKAFSPLRKLQKLYISK----NHLVEIPPNLP--  122 (332)
T ss_dssp             TTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEE-----CGGGSTTCTTCCEEECCS----SCCCSCCSSCC--
T ss_pred             CCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCcc-----CHhHhhCcCCCCEEECCC----CcCCccCcccc--
Confidence            3456666665555433 23455666666666666554321     355556666666666666    55555554443  


Q ss_pred             CCCcEEeccc
Q 039475          116 IHLRYLKLSA  125 (286)
Q Consensus       116 ~~Lr~L~L~~  125 (286)
                      .+|++|++++
T Consensus       123 ~~L~~L~l~~  132 (332)
T 2ft3_A          123 SSLVELRIHD  132 (332)
T ss_dssp             TTCCEEECCS
T ss_pred             ccCCEEECCC
Confidence            4444444443

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=99.62  E-value=3.3e-15  Score=130.17  Aligned_cols=176  Identities=18%  Similarity=0.033  Sum_probs=135.5

Q ss_pred             cCCceEEEeecCCCCCCchhhhcCCCCcEEEeccCCCCCCCcCccchhhhcCCCCCcEEEeecccCCccCcccCccccCC
Q 039475           36 QEKLRHLTLMLGLPTKFPVSIFDAKKLRSLSLFYDSKGQSAASPVLQGLFDQLTCLRALKIEELWYGDQTIEIPKGLENL  115 (286)
Q Consensus        36 ~~~~r~ls~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~i~~lP~~i~~L  115 (286)
                      ..+.+.+....+....+|..+.  ++++.|++.+|.....     .+..|.+++.|++|+|++    +.+..+|.. +.+
T Consensus         9 l~~l~~l~~~~~~l~~ip~~~~--~~l~~L~L~~N~l~~~-----~~~~~~~l~~L~~L~L~~----n~l~~~~~~-~~l   76 (290)
T 1p9a_G            9 VASHLEVNCDKRNLTALPPDLP--KDTTILHLSENLLYTF-----SLATLMPYTRLTQLNLDR----AELTKLQVD-GTL   76 (290)
T ss_dssp             STTCCEEECTTSCCSSCCSCCC--TTCCEEECTTSCCSEE-----EGGGGTTCTTCCEEECTT----SCCCEEECC-SCC
T ss_pred             cCCccEEECCCCCCCcCCCCCC--CCCCEEEcCCCcCCcc-----CHHHhhcCCCCCEEECCC----CccCcccCC-CCC
Confidence            3457788888777777777663  7899999999886542     567788999999999999    888888765 889


Q ss_pred             CCCcEEecccccccCCCCCCCCCcccccccccccCCCEEEecCCCccccccc-ccccccccccccccccccCCccCCCCC
Q 039475          116 IHLRYLKLSAVEELSETCYCPSLKRLPQGRGKLINLRHLIFDKDYLAYMANG-FERLTSLRTLSGFTVARVGGKYSSEAC  194 (286)
Q Consensus       116 ~~Lr~L~L~~~~~LP~~~~~~~l~~LP~~i~~L~~L~~L~l~~~~~~~lP~~-i~~L~~L~~L~~~~~~~~~~~~~~~~~  194 (286)
                      .+|++|++++          +.+..+|..+..+++|++|++++|.+..+|++ |+.+++|++|++..+...       ..
T Consensus        77 ~~L~~L~Ls~----------N~l~~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~-------~~  139 (290)
T 1p9a_G           77 PVLGTLDLSH----------NQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELK-------TL  139 (290)
T ss_dssp             TTCCEEECCS----------SCCSSCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCC-------CC
T ss_pred             CcCCEEECCC----------CcCCcCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCC-------cc
Confidence            9999999986          77888998889999999999999999988755 899999999988877644       23


Q ss_pred             CcccccCcccccceeEEcccCCcccchhhhhhcCCCCCCceEEEEeCCCC
Q 039475          195 NLEGLRNLNHLRQFLRICGLGNLQMRLKINAHLEKKKNLVHLTLDFDKGE  244 (286)
Q Consensus       195 ~~~~l~~L~~L~~~L~i~~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~  244 (286)
                      ....+..+++|+ .|.+.+..-   .......+..+++|+.|+|+.|+.+
T Consensus       140 ~~~~~~~l~~L~-~L~L~~N~l---~~l~~~~~~~l~~L~~L~L~~N~l~  185 (290)
T 1p9a_G          140 PPGLLTPTPKLE-KLSLANNNL---TELPAGLLNGLENLDTLLLQENSLY  185 (290)
T ss_dssp             CTTTTTTCTTCC-EEECTTSCC---SCCCTTTTTTCTTCCEEECCSSCCC
T ss_pred             ChhhcccccCCC-EEECCCCcC---CccCHHHhcCcCCCCEEECCCCcCC
Confidence            333456677777 777764311   2222244677889999999998876

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=99.61  E-value=6.3e-15  Score=138.00  Aligned_cols=175  Identities=17%  Similarity=0.176  Sum_probs=94.8

Q ss_pred             CCceEEEeecCCCCCCc-hhhhcCCCCcEEEeccCCCCCCCcCccchhhhcCCCCCcEEEeecccCCccCcccCccccCC
Q 039475           37 EKLRHLTLMLGLPTKFP-VSIFDAKKLRSLSLFYDSKGQSAASPVLQGLFDQLTCLRALKIEELWYGDQTIEIPKGLENL  115 (286)
Q Consensus        37 ~~~r~ls~~~~~~~~~~-~~~~~l~~Lr~L~l~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~i~~lP~~i~~L  115 (286)
                      .+++++.+..+.+..++ ..+..+++|++|++++|.....     .|..|.++++|++|+|++    |.+..+|..  .+
T Consensus        21 ~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~-----~~~~~~~l~~L~~L~Ls~----N~l~~lp~~--~l   89 (520)
T 2z7x_B           21 QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYL-----DISVFKFNQELEYLDLSH----NKLVKISCH--PT   89 (520)
T ss_dssp             TTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSCCCEE-----EGGGGTTCTTCCEEECCS----SCCCEEECC--CC
T ss_pred             ccccEEECCCCcccccChhhccccccccEEecCCCccCCc-----ChHHhhcccCCCEEecCC----CceeecCcc--cc
Confidence            45666666666654443 4566666666666666654331     455666666666666666    666666655  56


Q ss_pred             CCCcEEecccccccCCCCCCCCCcc--cccccccccCCCEEEecCCCcccccccccccccc--cccccccccccCCccCC
Q 039475          116 IHLRYLKLSAVEELSETCYCPSLKR--LPQGRGKLINLRHLIFDKDYLAYMANGFERLTSL--RTLSGFTVARVGGKYSS  191 (286)
Q Consensus       116 ~~Lr~L~L~~~~~LP~~~~~~~l~~--LP~~i~~L~~L~~L~l~~~~~~~lP~~i~~L~~L--~~L~~~~~~~~~~~~~~  191 (286)
                      .+|++|++++          +.+..  +|..++++++|++|++++|.+..  ..++.+++|  ++|++..+....     
T Consensus        90 ~~L~~L~L~~----------N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~--~~~~~l~~L~L~~L~l~~n~l~~-----  152 (520)
T 2z7x_B           90 VNLKHLDLSF----------NAFDALPICKEFGNMSQLKFLGLSTTHLEK--SSVLPIAHLNISKVLLVLGETYG-----  152 (520)
T ss_dssp             CCCSEEECCS----------SCCSSCCCCGGGGGCTTCCEEEEEESSCCG--GGGGGGTTSCEEEEEEEECTTTT-----
T ss_pred             CCccEEeccC----------CccccccchhhhccCCcceEEEecCcccch--hhccccccceeeEEEeecccccc-----
Confidence            6666666664          44443  45666666666666666666554  235555555  666655544310     


Q ss_pred             CCCCcccccCcccccceeEEcccCCccc-chhhhhhcCCCCCCceEEEEeCC
Q 039475          192 EACNLEGLRNLNHLRQFLRICGLGNLQM-RLKINAHLEKKKNLVHLTLDFDK  242 (286)
Q Consensus       192 ~~~~~~~l~~L~~L~~~L~i~~l~~~~~-~~~~~~~l~~l~~L~~L~L~~~~  242 (286)
                      .+..+..++.+.. + .+.+. +..... .......+..+++|+.|++++|.
T Consensus       153 ~~~~~~~l~~l~~-~-~l~l~-l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~  201 (520)
T 2z7x_B          153 EKEDPEGLQDFNT-E-SLHIV-FPTNKEFHFILDVSVKTVANLELSNIKCVL  201 (520)
T ss_dssp             SSCCTTTTTTCCE-E-EEEEE-CCSSSCCCCCCCCCCTTCSEEEECCEEECC
T ss_pred             ccccccccccccc-c-eEEEE-eccCcchhhhhhhhhhcccceeeccccccc
Confidence            0222333443331 1 22221 111111 11222345567788888888876

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=99.60  E-value=1.9e-15  Score=145.48  Aligned_cols=138  Identities=14%  Similarity=0.182  Sum_probs=100.1

Q ss_pred             cCCceEEEeecCCCCC------------------Cchhhh--cCCCCcEEEeccCCCCCCCcCccchhhhcCCCCCcEEE
Q 039475           36 QEKLRHLTLMLGLPTK------------------FPVSIF--DAKKLRSLSLFYDSKGQSAASPVLQGLFDQLTCLRALK   95 (286)
Q Consensus        36 ~~~~r~ls~~~~~~~~------------------~~~~~~--~l~~Lr~L~l~~~~~~~~~~~~~~~~~~~~l~~Lr~L~   95 (286)
                      ..+.+.+.+..+.+..                  +|..+.  ++++|++|++.+|.....     +|..|.+++.|++|+
T Consensus       205 l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~-----~p~~l~~l~~L~~L~  279 (636)
T 4eco_A          205 LTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTK-----LPTFLKALPEMQLIN  279 (636)
T ss_dssp             CTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSS-----CCTTTTTCSSCCEEE
T ss_pred             ccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCcc-----ChHHHhcCCCCCEEE
Confidence            4568888888888866                  888887  899999999988876543     777888888888888


Q ss_pred             eecccCCcc-Cc--ccCccccCC------CCCcEEeccc--ccccCC--C-CC----------CCCCc-ccccccccccC
Q 039475           96 IEELWYGDQ-TI--EIPKGLENL------IHLRYLKLSA--VEELSE--T-CY----------CPSLK-RLPQGRGKLIN  150 (286)
Q Consensus        96 L~~~~~~~~-i~--~lP~~i~~L------~~Lr~L~L~~--~~~LP~--~-~~----------~~~l~-~LP~~i~~L~~  150 (286)
                      +++    |. +.  .+|..+++|      ++|++|++++  +..+|.  . +.          .+.+. .+| .++++++
T Consensus       280 Ls~----n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~~ip~~~~l~~l~~L~~L~L~~N~l~g~ip-~~~~l~~  354 (636)
T 4eco_A          280 VAC----NRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLKTFPVETSLQKMKKLGMLECLYNQLEGKLP-AFGSEIK  354 (636)
T ss_dssp             CTT----CTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCSSCCCHHHHTTCTTCCEEECCSCCCEEECC-CCEEEEE
T ss_pred             CcC----CCCCccccchHHHHhhhccccCCCCCEEECCCCcCCccCchhhhccCCCCCEEeCcCCcCccchh-hhCCCCC
Confidence            888    76 76  478888776      8888888887  556666  4 32          22334 566 6666667


Q ss_pred             CCEEEecCCCccccccccccccc-cccccccccc
Q 039475          151 LRHLIFDKDYLAYMANGFERLTS-LRTLSGFTVA  183 (286)
Q Consensus       151 L~~L~l~~~~~~~lP~~i~~L~~-L~~L~~~~~~  183 (286)
                      |++|++++|.+..+|.+++++++ |++|++..+.
T Consensus       355 L~~L~L~~N~l~~lp~~l~~l~~~L~~L~Ls~N~  388 (636)
T 4eco_A          355 LASLNLAYNQITEIPANFCGFTEQVENLSFAHNK  388 (636)
T ss_dssp             ESEEECCSSEEEECCTTSEEECTTCCEEECCSSC
T ss_pred             CCEEECCCCccccccHhhhhhcccCcEEEccCCc
Confidence            77777766666666666666666 7766665554

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=99.59  E-value=2.1e-15  Score=131.86  Aligned_cols=184  Identities=20%  Similarity=0.117  Sum_probs=109.1

Q ss_pred             eEEEeecCCCCCCchhhhcCCCCcEEEeccCCCCCCCcCccchhhhcCCCCCcEEEeecccCCccCccc---CccccCCC
Q 039475           40 RHLTLMLGLPTKFPVSIFDAKKLRSLSLFYDSKGQSAASPVLQGLFDQLTCLRALKIEELWYGDQTIEI---PKGLENLI  116 (286)
Q Consensus        40 r~ls~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~i~~l---P~~i~~L~  116 (286)
                      +.+.........+|..+  .++|+.|++.++.....     .+..|.++++|++|++++    +.+..+   |..+..+.
T Consensus        10 ~~l~c~~~~l~~ip~~~--~~~l~~L~L~~n~l~~i-----~~~~~~~l~~L~~L~L~~----n~l~~~~~~~~~~~~~~   78 (306)
T 2z66_A           10 TEIRCNSKGLTSVPTGI--PSSATRLELESNKLQSL-----PHGVFDKLTQLTKLSLSS----NGLSFKGCCSQSDFGTT   78 (306)
T ss_dssp             TEEECCSSCCSSCCSCC--CTTCCEEECCSSCCCCC-----CTTTTTTCTTCSEEECCS----SCCCEEEEEEHHHHSCS
T ss_pred             CEEEcCCCCcccCCCCC--CCCCCEEECCCCccCcc-----CHhHhhccccCCEEECCC----CccCcccCccccccccc
Confidence            35566666666777655  47999999999986531     445689999999999999    888755   67888999


Q ss_pred             CCcEEeccc--ccccCCC-CCCCC----------Ccccc--cccccccCCCEEEecCCCccccc-ccccccccccccccc
Q 039475          117 HLRYLKLSA--VEELSET-CYCPS----------LKRLP--QGRGKLINLRHLIFDKDYLAYMA-NGFERLTSLRTLSGF  180 (286)
Q Consensus       117 ~Lr~L~L~~--~~~LP~~-~~~~~----------l~~LP--~~i~~L~~L~~L~l~~~~~~~lP-~~i~~L~~L~~L~~~  180 (286)
                      +|++|++++  +..+|.. ..+..          +..+|  ..+.++++|++|++++|.+...+ ..++.+++|++|++.
T Consensus        79 ~L~~L~Ls~n~i~~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~  158 (306)
T 2z66_A           79 SLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMA  158 (306)
T ss_dssp             CCCEEECCSCSEEEEEEEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECT
T ss_pred             ccCEEECCCCccccChhhcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECC
Confidence            999999997  4444443 32222          22223  23455555555555555544332 235555555555554


Q ss_pred             cccccCCccCCCCCCcccccCcccccceeEEcccCCcccchhhhhhcCCCCCCceEEEEeCCCC
Q 039475          181 TVARVGGKYSSEACNLEGLRNLNHLRQFLRICGLGNLQMRLKINAHLEKKKNLVHLTLDFDKGE  244 (286)
Q Consensus       181 ~~~~~~~~~~~~~~~~~~l~~L~~L~~~L~i~~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~  244 (286)
                      .+...      .......+..+++|+ .|.+.+..-   ....+..+..+++|+.|+++.|..+
T Consensus       159 ~n~l~------~~~~~~~~~~l~~L~-~L~Ls~n~l---~~~~~~~~~~l~~L~~L~L~~N~l~  212 (306)
T 2z66_A          159 GNSFQ------ENFLPDIFTELRNLT-FLDLSQCQL---EQLSPTAFNSLSSLQVLNMSHNNFF  212 (306)
T ss_dssp             TCEEG------GGEECSCCTTCTTCC-EEECTTSCC---CEECTTTTTTCTTCCEEECTTSCCS
T ss_pred             CCccc------cccchhHHhhCcCCC-EEECCCCCc---CCcCHHHhcCCCCCCEEECCCCccC
Confidence            44322      001222344445555 555543211   2222345666677777777776665

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=99.59  E-value=3.8e-14  Score=124.43  Aligned_cols=170  Identities=18%  Similarity=0.197  Sum_probs=139.8

Q ss_pred             cCCceEEEeecCCCCCCchhhhcCCCCcEEEeccCCCCCCCcCccchhhhcCCCCCcEEEeecccCCccCcccCccccCC
Q 039475           36 QEKLRHLTLMLGLPTKFPVSIFDAKKLRSLSLFYDSKGQSAASPVLQGLFDQLTCLRALKIEELWYGDQTIEIPKGLENL  115 (286)
Q Consensus        36 ~~~~r~ls~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~i~~lP~~i~~L  115 (286)
                      ..+++.+.+..+.+..++. +..+++|+.|++.++....      ++ .+..++.|++|++++    +.+..+|. ++.+
T Consensus        62 l~~L~~L~L~~n~i~~~~~-~~~l~~L~~L~L~~n~l~~------~~-~~~~l~~L~~L~l~~----n~l~~~~~-l~~l  128 (308)
T 1h6u_A           62 LNNLIGLELKDNQITDLAP-LKNLTKITELELSGNPLKN------VS-AIAGLQSIKTLDLTS----TQITDVTP-LAGL  128 (308)
T ss_dssp             CTTCCEEECCSSCCCCCGG-GTTCCSCCEEECCSCCCSC------CG-GGTTCTTCCEEECTT----SCCCCCGG-GTTC
T ss_pred             cCCCCEEEccCCcCCCChh-HccCCCCCEEEccCCcCCC------ch-hhcCCCCCCEEECCC----CCCCCchh-hcCC
Confidence            4678999999998877777 8999999999999998653      44 578999999999999    99998875 9999


Q ss_pred             CCCcEEecccccccCCCCCCCCCcccccccccccCCCEEEecCCCcccccccccccccccccccccccccCCccCCCCCC
Q 039475          116 IHLRYLKLSAVEELSETCYCPSLKRLPQGRGKLINLRHLIFDKDYLAYMANGFERLTSLRTLSGFTVARVGGKYSSEACN  195 (286)
Q Consensus       116 ~~Lr~L~L~~~~~LP~~~~~~~l~~LP~~i~~L~~L~~L~l~~~~~~~lP~~i~~L~~L~~L~~~~~~~~~~~~~~~~~~  195 (286)
                      ++|++|++++          +.+..+|. ++++++|++|++++|.+..+|. ++.+++|++|++..+...         .
T Consensus       129 ~~L~~L~l~~----------n~l~~~~~-l~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~l~~n~l~---------~  187 (308)
T 1h6u_A          129 SNLQVLYLDL----------NQITNISP-LAGLTNLQYLSIGNAQVSDLTP-LANLSKLTTLKADDNKIS---------D  187 (308)
T ss_dssp             TTCCEEECCS----------SCCCCCGG-GGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCC---------C
T ss_pred             CCCCEEECCC----------CccCcCcc-ccCCCCccEEEccCCcCCCChh-hcCCCCCCEEECCCCccC---------c
Confidence            9999999996          67888876 8999999999999999998877 999999999998877543         2


Q ss_pred             cccccCcccccceeEEcccCCcccchhhhhhcCCCCCCceEEEEeCCCCC
Q 039475          196 LEGLRNLNHLRQFLRICGLGNLQMRLKINAHLEKKKNLVHLTLDFDKGED  245 (286)
Q Consensus       196 ~~~l~~L~~L~~~L~i~~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~  245 (286)
                      +..+..+++|+ .|.+.+..- ..   .+ .+..+++|+.|+++.|..+.
T Consensus       188 ~~~l~~l~~L~-~L~L~~N~l-~~---~~-~l~~l~~L~~L~l~~N~i~~  231 (308)
T 1h6u_A          188 ISPLASLPNLI-EVHLKNNQI-SD---VS-PLANTSNLFIVTLTNQTITN  231 (308)
T ss_dssp             CGGGGGCTTCC-EEECTTSCC-CB---CG-GGTTCTTCCEEEEEEEEEEC
T ss_pred             ChhhcCCCCCC-EEEccCCcc-Cc---cc-cccCCCCCCEEEccCCeeec
Confidence            33367777777 788875422 11   11 37889999999999998753

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=99.59  E-value=7.2e-15  Score=138.35  Aligned_cols=179  Identities=16%  Similarity=0.149  Sum_probs=136.1

Q ss_pred             ccCCceEEEeecCCCCCC-chhhhcCCCCcEEEeccCCCCCCCcCccchhhhcCCCCCcEEEeecccCCccCcccCcc-c
Q 039475           35 CQEKLRHLTLMLGLPTKF-PVSIFDAKKLRSLSLFYDSKGQSAASPVLQGLFDQLTCLRALKIEELWYGDQTIEIPKG-L  112 (286)
Q Consensus        35 ~~~~~r~ls~~~~~~~~~-~~~~~~l~~Lr~L~l~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~i~~lP~~-i  112 (286)
                      .+..++++.+..+.+..+ +..+..+++|++|+++++.....     .|..|.++++|++|++++    +.+..+|.. +
T Consensus        24 ~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~-----~~~~~~~l~~L~~L~Ls~----n~l~~~~~~~~   94 (549)
T 2z81_A           24 LTAAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTI-----EGDAFYSLGSLEHLDLSD----NHLSSLSSSWF   94 (549)
T ss_dssp             CCTTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCCEE-----CTTTTTTCTTCCEEECTT----SCCCSCCHHHH
T ss_pred             CCCCccEEECcCCccCccChhhhhcCCcccEEECCCCCcCcc-----ChhhccccccCCEEECCC----CccCccCHHHh
Confidence            346799999999888554 56789999999999999986542     667899999999999999    999988875 9


Q ss_pred             cCCCCCcEEecccccccCCCCCCCCCcc--cccccccccCCCEEEecCCC-cccccc-cccccccccccccccccccCCc
Q 039475          113 ENLIHLRYLKLSAVEELSETCYCPSLKR--LPQGRGKLINLRHLIFDKDY-LAYMAN-GFERLTSLRTLSGFTVARVGGK  188 (286)
Q Consensus       113 ~~L~~Lr~L~L~~~~~LP~~~~~~~l~~--LP~~i~~L~~L~~L~l~~~~-~~~lP~-~i~~L~~L~~L~~~~~~~~~~~  188 (286)
                      +++++|++|++++          +.+..  +|..++++++|++|++++|. +..+|. .++++++|++|++..+...   
T Consensus        95 ~~l~~L~~L~Ls~----------n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~---  161 (549)
T 2z81_A           95 GPLSSLKYLNLMG----------NPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLR---  161 (549)
T ss_dssp             TTCTTCCEEECTT----------CCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCC---
T ss_pred             ccCCCCcEEECCC----------CcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCccc---
Confidence            9999999999986          55664  46778899999999998887 567764 5899999999988776544   


Q ss_pred             cCCCCCCcccccCcccccceeEEcccCCcccchhhhh-hcCCCCCCceEEEEeCCCC
Q 039475          189 YSSEACNLEGLRNLNHLRQFLRICGLGNLQMRLKINA-HLEKKKNLVHLTLDFDKGE  244 (286)
Q Consensus       189 ~~~~~~~~~~l~~L~~L~~~L~i~~l~~~~~~~~~~~-~l~~l~~L~~L~L~~~~~~  244 (286)
                          +.....++++++|+ .|.+.....    ...+. .+..+++|+.|+++.|...
T Consensus       162 ----~~~~~~l~~l~~L~-~L~l~~n~~----~~~~~~~~~~l~~L~~L~L~~n~l~  209 (549)
T 2z81_A          162 ----NYQSQSLKSIRDIH-HLTLHLSES----AFLLEIFADILSSVRYLELRDTNLA  209 (549)
T ss_dssp             ----EECTTTTTTCSEEE-EEEEECSBS----TTHHHHHHHSTTTBSEEEEESCBCT
T ss_pred             ----ccChhhhhccccCc-eEecccCcc----cccchhhHhhcccccEEEccCCccc
Confidence                33445566677676 677664321    11122 2345777888888877765

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=99.58  E-value=4e-14  Score=125.69  Aligned_cols=132  Identities=21%  Similarity=0.201  Sum_probs=77.9

Q ss_pred             cCCceEEEeecCCCCCCchhhhcCCCCcEEEeccCCCCCCCcCccchhhhcCCCCCcEEEeecccCCccCcccCccccCC
Q 039475           36 QEKLRHLTLMLGLPTKFPVSIFDAKKLRSLSLFYDSKGQSAASPVLQGLFDQLTCLRALKIEELWYGDQTIEIPKGLENL  115 (286)
Q Consensus        36 ~~~~r~ls~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~i~~lP~~i~~L  115 (286)
                      ..+++++.+..+....++ .+..+++|++|++.++....      ++. |..+++|++|++++    +.+..+| .++++
T Consensus        43 l~~L~~L~l~~~~i~~~~-~~~~~~~L~~L~l~~n~i~~------~~~-~~~l~~L~~L~L~~----n~i~~~~-~~~~l  109 (347)
T 4fmz_A           43 LESITKLVVAGEKVASIQ-GIEYLTNLEYLNLNGNQITD------ISP-LSNLVKLTNLYIGT----NKITDIS-ALQNL  109 (347)
T ss_dssp             HTTCSEEECCSSCCCCCT-TGGGCTTCCEEECCSSCCCC------CGG-GTTCTTCCEEECCS----SCCCCCG-GGTTC
T ss_pred             cccccEEEEeCCccccch-hhhhcCCccEEEccCCcccc------chh-hhcCCcCCEEEccC----CcccCch-HHcCC
Confidence            355677777766665554 36667777777777765443      333 66777777777777    6666654 57777


Q ss_pred             CCCcEEeccc--ccccCCC-C----------CCCCCcccccccccccCCCEEEecCCCcccccccccccccccccccccc
Q 039475          116 IHLRYLKLSA--VEELSET-C----------YCPSLKRLPQGRGKLINLRHLIFDKDYLAYMANGFERLTSLRTLSGFTV  182 (286)
Q Consensus       116 ~~Lr~L~L~~--~~~LP~~-~----------~~~~l~~LP~~i~~L~~L~~L~l~~~~~~~lP~~i~~L~~L~~L~~~~~  182 (286)
                      ++|++|++++  +..+|.. .          +|..+..++ .++++++|++|++.+|.+..++. ++.+++|++|++..+
T Consensus       110 ~~L~~L~l~~n~i~~~~~~~~l~~L~~L~l~~n~~~~~~~-~~~~l~~L~~L~l~~~~~~~~~~-~~~l~~L~~L~l~~n  187 (347)
T 4fmz_A          110 TNLRELYLNEDNISDISPLANLTKMYSLNLGANHNLSDLS-PLSNMTGLNYLTVTESKVKDVTP-IANLTDLYSLSLNYN  187 (347)
T ss_dssp             TTCSEEECTTSCCCCCGGGTTCTTCCEEECTTCTTCCCCG-GGTTCTTCCEEECCSSCCCCCGG-GGGCTTCSEEECTTS
T ss_pred             CcCCEEECcCCcccCchhhccCCceeEEECCCCCCccccc-chhhCCCCcEEEecCCCcCCchh-hccCCCCCEEEccCC
Confidence            7777777766  4444322 1          222233333 35566666666666665555543 556666666655544

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=99.58  E-value=1.1e-14  Score=129.96  Aligned_cols=172  Identities=19%  Similarity=0.146  Sum_probs=135.9

Q ss_pred             EEeecCCCCCCchhhhcCCCCcEEEeccCCCCCCCcCccchhhhcCCCCCcEEEeecccCCccCcccC-ccccCCCCCcE
Q 039475           42 LTLMLGLPTKFPVSIFDAKKLRSLSLFYDSKGQSAASPVLQGLFDQLTCLRALKIEELWYGDQTIEIP-KGLENLIHLRY  120 (286)
Q Consensus        42 ls~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~i~~lP-~~i~~L~~Lr~  120 (286)
                      .....+....+|..+.  ++|++|++.++.....     .+..|.++++|++|++++    +.+..++ ..++++.+|++
T Consensus        36 c~~~~~~l~~iP~~~~--~~L~~L~l~~n~i~~~-----~~~~~~~l~~L~~L~L~~----n~l~~~~~~~~~~l~~L~~  104 (353)
T 2z80_A           36 CKGSSGSLNSIPSGLT--EAVKSLDLSNNRITYI-----SNSDLQRCVNLQALVLTS----NGINTIEEDSFSSLGSLEH  104 (353)
T ss_dssp             EECCSTTCSSCCTTCC--TTCCEEECTTSCCCEE-----CTTTTTTCTTCCEEECTT----SCCCEECTTTTTTCTTCCE
T ss_pred             eeCCCCCccccccccc--ccCcEEECCCCcCccc-----CHHHhccCCCCCEEECCC----CccCccCHhhcCCCCCCCE
Confidence            5566666777887664  6999999999986542     455789999999999999    9988775 57999999999


Q ss_pred             EecccccccCCCCCCCCCcccccc-cccccCCCEEEecCCCcccccc--cccccccccccccccccccCCccCCCCCCcc
Q 039475          121 LKLSAVEELSETCYCPSLKRLPQG-RGKLINLRHLIFDKDYLAYMAN--GFERLTSLRTLSGFTVARVGGKYSSEACNLE  197 (286)
Q Consensus       121 L~L~~~~~LP~~~~~~~l~~LP~~-i~~L~~L~~L~l~~~~~~~lP~--~i~~L~~L~~L~~~~~~~~~~~~~~~~~~~~  197 (286)
                      |++++          +.++.+|.. ++++++|++|++++|.+..+|.  .++++++|++|++..+...      ......
T Consensus       105 L~Ls~----------n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~------~~~~~~  168 (353)
T 2z80_A          105 LDLSY----------NYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTF------TKIQRK  168 (353)
T ss_dssp             EECCS----------SCCSSCCHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSC------CEECTT
T ss_pred             EECCC----------CcCCcCCHhHhCCCccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCccc------cccCHH
Confidence            99996          778899876 8999999999999999999987  5999999999998876322      122334


Q ss_pred             cccCcccccceeEEcccCCcccchhhhhhcCCCCCCceEEEEeCCCC
Q 039475          198 GLRNLNHLRQFLRICGLGNLQMRLKINAHLEKKKNLVHLTLDFDKGE  244 (286)
Q Consensus       198 ~l~~L~~L~~~L~i~~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~  244 (286)
                      .++.+++|+ .|.+.+..-   ....+..+..+++|++|+++.|..+
T Consensus       169 ~~~~l~~L~-~L~l~~n~l---~~~~~~~l~~l~~L~~L~l~~n~l~  211 (353)
T 2z80_A          169 DFAGLTFLE-ELEIDASDL---QSYEPKSLKSIQNVSHLILHMKQHI  211 (353)
T ss_dssp             TTTTCCEEE-EEEEEETTC---CEECTTTTTTCSEEEEEEEECSCST
T ss_pred             HccCCCCCC-EEECCCCCc---CccCHHHHhccccCCeecCCCCccc
Confidence            567777777 787764321   2334567888889999999998875

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.58  E-value=4.7e-15  Score=141.59  Aligned_cols=127  Identities=19%  Similarity=0.185  Sum_probs=87.4

Q ss_pred             CCceEEEeecCCCCCCchh-hhcCCCCcEEEeccCCCCCCCcCccchhhhcCCCCCcEEEeecccCCccCcccCc-cccC
Q 039475           37 EKLRHLTLMLGLPTKFPVS-IFDAKKLRSLSLFYDSKGQSAASPVLQGLFDQLTCLRALKIEELWYGDQTIEIPK-GLEN  114 (286)
Q Consensus        37 ~~~r~ls~~~~~~~~~~~~-~~~l~~Lr~L~l~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~i~~lP~-~i~~  114 (286)
                      .+.+.+.+..+....+|+. +..+++|++|++.++.....     .+..|..++.|++|+|++    |.+..+|. .+++
T Consensus        51 ~~l~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n~l~~~-----~~~~~~~l~~L~~L~L~~----n~l~~~~~~~~~~  121 (597)
T 3oja_B           51 NNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEI-----DTYAFAYAHTIQKLYMGF----NAIRYLPPHVFQN  121 (597)
T ss_dssp             CCCSEEEESSCEESEECTHHHHHCCCCSEEECTTSCCCEE-----CTTTTTTCTTCCEEECCS----SCCCCCCTTTTTT
T ss_pred             CCceEEEeeCCCCCCcCHHHHccCCCCcEEECCCCCCCCC-----ChHHhcCCCCCCEEECCC----CcCCCCCHHHHcC
Confidence            4568888888777666655 57799999999999876542     556788999999999999    88887765 4699


Q ss_pred             CCCCcEEecccccccCCCCCCCCCccccccc-ccccCCCEEEecCCCcccccc-cccccccccccccccc
Q 039475          115 LIHLRYLKLSAVEELSETCYCPSLKRLPQGR-GKLINLRHLIFDKDYLAYMAN-GFERLTSLRTLSGFTV  182 (286)
Q Consensus       115 L~~Lr~L~L~~~~~LP~~~~~~~l~~LP~~i-~~L~~L~~L~l~~~~~~~lP~-~i~~L~~L~~L~~~~~  182 (286)
                      +++|++|+|++          +.+..+|..+ +++++|++|++++|.+..+|+ .|+.+++|++|++..+
T Consensus       122 l~~L~~L~L~~----------n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N  181 (597)
T 3oja_B          122 VPLLTVLVLER----------NDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSN  181 (597)
T ss_dssp             CTTCCEEECCS----------SCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTS
T ss_pred             CCCCCEEEeeC----------CCCCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCC
Confidence            99999999987          3444554442 555555555555555554433 2555555555554443

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=99.58  E-value=1.5e-14  Score=132.90  Aligned_cols=189  Identities=20%  Similarity=0.211  Sum_probs=146.8

Q ss_pred             cCCceEEEeecCCCCCCc-hhhhcCCCCcEEEeccCCCCCCCcCccchhhhcCCCCCcEEEeecccCCccCcccCc-ccc
Q 039475           36 QEKLRHLTLMLGLPTKFP-VSIFDAKKLRSLSLFYDSKGQSAASPVLQGLFDQLTCLRALKIEELWYGDQTIEIPK-GLE  113 (286)
Q Consensus        36 ~~~~r~ls~~~~~~~~~~-~~~~~l~~Lr~L~l~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~i~~lP~-~i~  113 (286)
                      ..+++.|.+..+.+..++ ..|..+++|++|++++|.....     .+..|..+++|++|+|++    |.+..+|. .+.
T Consensus        87 l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~-----~~~~~~~l~~L~~L~L~~----N~i~~~~~~~~~  157 (440)
T 3zyj_A           87 LRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTTI-----PNGAFVYLSKLKELWLRN----NPIESIPSYAFN  157 (440)
T ss_dssp             CSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSCCSSC-----CTTTSCSCSSCCEEECCS----CCCCEECTTTTT
T ss_pred             CCCCCEEECCCCcCCccChhhccCCccCCEEECCCCcCCee-----CHhHhhccccCceeeCCC----CcccccCHHHhh
Confidence            356899999988875554 6788999999999999976532     556789999999999999    99888876 778


Q ss_pred             CCCCCcEEeccc---ccccCCC-C-----------CCCCCcccccccccccCCCEEEecCCCcccc-ccccccccccccc
Q 039475          114 NLIHLRYLKLSA---VEELSET-C-----------YCPSLKRLPQGRGKLINLRHLIFDKDYLAYM-ANGFERLTSLRTL  177 (286)
Q Consensus       114 ~L~~Lr~L~L~~---~~~LP~~-~-----------~~~~l~~LP~~i~~L~~L~~L~l~~~~~~~l-P~~i~~L~~L~~L  177 (286)
                      ++.+|++|++++   +..+|.. .           ..+.++.+| .+..+++|++|++++|.+..+ |..|..+++|++|
T Consensus       158 ~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L  236 (440)
T 3zyj_A          158 RIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLREIP-NLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKL  236 (440)
T ss_dssp             TCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCSSCC-CCTTCSSCCEEECTTSCCCEECTTTTTTCTTCCEE
T ss_pred             hCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCcccc-ccCCCcccCEEECCCCccCccChhhhccCccCCEE
Confidence            999999999986   6667664 3           234466777 588999999999999999977 4569999999999


Q ss_pred             ccccccccCCccCCCCCCcccccCcccccceeEEcccCCcccchhhhhhcCCCCCCceEEEEeCCCCC
Q 039475          178 SGFTVARVGGKYSSEACNLEGLRNLNHLRQFLRICGLGNLQMRLKINAHLEKKKNLVHLTLDFDKGED  245 (286)
Q Consensus       178 ~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~~L~i~~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~  245 (286)
                      ++..+...       ......+.++++|+ .|.+.+..-   .......+..+++|+.|+|+.|...-
T Consensus       237 ~L~~n~l~-------~~~~~~~~~l~~L~-~L~L~~N~l---~~~~~~~~~~l~~L~~L~L~~Np~~C  293 (440)
T 3zyj_A          237 WMIQSQIQ-------VIERNAFDNLQSLV-EINLAHNNL---TLLPHDLFTPLHHLERIHLHHNPWNC  293 (440)
T ss_dssp             ECTTCCCC-------EECTTSSTTCTTCC-EEECTTSCC---CCCCTTTTSSCTTCCEEECCSSCEEC
T ss_pred             ECCCCcee-------EEChhhhcCCCCCC-EEECCCCCC---CccChhHhccccCCCEEEcCCCCccC
Confidence            98877654       33445677777777 788875421   22233457888999999999998643

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=99.58  E-value=5.7e-15  Score=133.52  Aligned_cols=80  Identities=18%  Similarity=0.235  Sum_probs=57.6

Q ss_pred             CCceEEEeecCCCCCCc-hhhhcCCCCcEEEeccCCCCCCCcCccchhhhcCCCCCcEEEeecccCCccCcccCccc-cC
Q 039475           37 EKLRHLTLMLGLPTKFP-VSIFDAKKLRSLSLFYDSKGQSAASPVLQGLFDQLTCLRALKIEELWYGDQTIEIPKGL-EN  114 (286)
Q Consensus        37 ~~~r~ls~~~~~~~~~~-~~~~~l~~Lr~L~l~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~i~~lP~~i-~~  114 (286)
                      .+++.+.+..+.+..++ ..+..+++|++|++.++.....     .|..|.++++|++|++++    +.+..+|..+ ++
T Consensus        69 ~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~-----~~~~~~~l~~L~~L~L~~----n~l~~l~~~~~~~  139 (390)
T 3o6n_A           69 RQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYL-----PPHVFQNVPLLTVLVLER----NDLSSLPRGIFHN  139 (390)
T ss_dssp             CCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCC-----CTTTTTTCTTCCEEECCS----SCCCCCCTTTTTT
T ss_pred             ccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcC-----CHHHhcCCCCCCEEECCC----CccCcCCHHHhcC
Confidence            45777888777765544 3677788888888887765432     556677788888888888    7777777664 77


Q ss_pred             CCCCcEEeccc
Q 039475          115 LIHLRYLKLSA  125 (286)
Q Consensus       115 L~~Lr~L~L~~  125 (286)
                      +++|++|++++
T Consensus       140 l~~L~~L~L~~  150 (390)
T 3o6n_A          140 TPKLTTLSMSN  150 (390)
T ss_dssp             CTTCCEEECCS
T ss_pred             CCCCcEEECCC
Confidence            77888888776

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.58  E-value=5.6e-15  Score=141.08  Aligned_cols=80  Identities=18%  Similarity=0.235  Sum_probs=59.2

Q ss_pred             CCceEEEeecCCCCCCc-hhhhcCCCCcEEEeccCCCCCCCcCccchhhhcCCCCCcEEEeecccCCccCcccCccc-cC
Q 039475           37 EKLRHLTLMLGLPTKFP-VSIFDAKKLRSLSLFYDSKGQSAASPVLQGLFDQLTCLRALKIEELWYGDQTIEIPKGL-EN  114 (286)
Q Consensus        37 ~~~r~ls~~~~~~~~~~-~~~~~l~~Lr~L~l~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~i~~lP~~i-~~  114 (286)
                      ..++.|.+..+.+..++ ..+..+++|++|++++|.....     .|..|++++.|++|+|++    |.+..+|..+ ++
T Consensus        75 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~-----~~~~~~~l~~L~~L~L~~----n~l~~l~~~~~~~  145 (597)
T 3oja_B           75 RQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYL-----PPHVFQNVPLLTVLVLER----NDLSSLPRGIFHN  145 (597)
T ss_dssp             CCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCC-----CTTTTTTCTTCCEEECCS----SCCCCCCTTTTTT
T ss_pred             CCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCC-----CHHHHcCCCCCCEEEeeC----CCCCCCCHHHhcc
Confidence            46788888877775544 3677888888888888775442     566677888888888888    7777777764 77


Q ss_pred             CCCCcEEeccc
Q 039475          115 LIHLRYLKLSA  125 (286)
Q Consensus       115 L~~Lr~L~L~~  125 (286)
                      +.+|++|+|++
T Consensus       146 l~~L~~L~Ls~  156 (597)
T 3oja_B          146 TPKLTTLSMSN  156 (597)
T ss_dssp             CTTCCEEECCS
T ss_pred             CCCCCEEEeeC
Confidence            88888888876

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=99.58  E-value=1.2e-14  Score=133.60  Aligned_cols=185  Identities=18%  Similarity=0.221  Sum_probs=136.1

Q ss_pred             cccCCceEEEeecCCCCCC-chhhhcCCCCcEEEeccCCCCCCCcCccchhhhcCCCCCcEEEeecccCCccCccc-Ccc
Q 039475           34 SCQEKLRHLTLMLGLPTKF-PVSIFDAKKLRSLSLFYDSKGQSAASPVLQGLFDQLTCLRALKIEELWYGDQTIEI-PKG  111 (286)
Q Consensus        34 ~~~~~~r~ls~~~~~~~~~-~~~~~~l~~Lr~L~l~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~i~~l-P~~  111 (286)
                      ..+.+++++.+..+.+..+ |..+.++++|++|++.++.....    +.+..|.++++|++|+|++    +.+..+ |..
T Consensus        27 ~l~~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~----i~~~~~~~l~~L~~L~Ls~----n~l~~~~~~~   98 (455)
T 3v47_A           27 ELPAHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLV----IRNNTFRGLSSLIILKLDY----NQFLQLETGA   98 (455)
T ss_dssp             CCCTTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCE----ECTTTTTTCTTCCEEECTT----CTTCEECTTT
T ss_pred             CCCCccCEEEecCCccCcCChhHhccCccccEEECcCCcccce----ECcccccccccCCEEeCCC----CccCccChhh
Confidence            3567899999999888655 67789999999999999876432    1467789999999999999    998866 789


Q ss_pred             ccCCCCCcEEecccccccCCCCCCCCCcc-cccc--cccccCCCEEEecCCCcccc-ccc-ccccccccccccccccccC
Q 039475          112 LENLIHLRYLKLSAVEELSETCYCPSLKR-LPQG--RGKLINLRHLIFDKDYLAYM-ANG-FERLTSLRTLSGFTVARVG  186 (286)
Q Consensus       112 i~~L~~Lr~L~L~~~~~LP~~~~~~~l~~-LP~~--i~~L~~L~~L~l~~~~~~~l-P~~-i~~L~~L~~L~~~~~~~~~  186 (286)
                      ++++++|++|++++          +.+.. +|..  ++++++|++|++++|.+..+ |.. ++++++|++|++..+... 
T Consensus        99 ~~~l~~L~~L~L~~----------n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~-  167 (455)
T 3v47_A           99 FNGLANLEVLTLTQ----------CNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVK-  167 (455)
T ss_dssp             TTTCTTCCEEECTT----------SCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBS-
T ss_pred             ccCcccCCEEeCCC----------CCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCccc-
Confidence            99999999999996          45654 4554  89999999999999999877 555 899999999998877654 


Q ss_pred             CccCCCCCCcccccCc--ccccceeEEcccCCccc-----chhhhhhcCCCCCCceEEEEeCCCC
Q 039475          187 GKYSSEACNLEGLRNL--NHLRQFLRICGLGNLQM-----RLKINAHLEKKKNLVHLTLDFDKGE  244 (286)
Q Consensus       187 ~~~~~~~~~~~~l~~L--~~L~~~L~i~~l~~~~~-----~~~~~~~l~~l~~L~~L~L~~~~~~  244 (286)
                            +.....+..+  .+|+ .|.+.+..-...     .......+..+++|+.|+++.|...
T Consensus       168 ------~~~~~~l~~l~~~~L~-~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~  225 (455)
T 3v47_A          168 ------SICEEDLLNFQGKHFT-LLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFK  225 (455)
T ss_dssp             ------CCCTTTSGGGTTCEEE-EEECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCC
T ss_pred             ------ccChhhhhcccccccc-ccccccCcccccchhhccccccccccccceeeeEecCCCccc
Confidence                  2333344443  3444 455543321110     1112233456678889999888776

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=99.58  E-value=8.7e-15  Score=129.34  Aligned_cols=136  Identities=18%  Similarity=0.174  Sum_probs=104.8

Q ss_pred             CceEEEeecCCCCCCchhhhcCCCCcEEEeccCCCCCCCcCccchhhhcCCCCCcEEEeecccCCccCccc-CccccCCC
Q 039475           38 KLRHLTLMLGLPTKFPVSIFDAKKLRSLSLFYDSKGQSAASPVLQGLFDQLTCLRALKIEELWYGDQTIEI-PKGLENLI  116 (286)
Q Consensus        38 ~~r~ls~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~i~~l-P~~i~~L~  116 (286)
                      ..+.+.+..+....+|..+  .+.|+.|++.++.....     .+..|.++++|++|++++    +.+..+ |..+++++
T Consensus        32 ~l~~l~~~~~~l~~lp~~~--~~~l~~L~L~~n~i~~~-----~~~~~~~l~~L~~L~L~~----n~l~~~~~~~~~~l~  100 (330)
T 1xku_A           32 HLRVVQCSDLGLEKVPKDL--PPDTALLDLQNNKITEI-----KDGDFKNLKNLHTLILIN----NKISKISPGAFAPLV  100 (330)
T ss_dssp             ETTEEECTTSCCCSCCCSC--CTTCCEEECCSSCCCCB-----CTTTTTTCTTCCEEECCS----SCCCCBCTTTTTTCT
T ss_pred             CCeEEEecCCCccccCccC--CCCCeEEECCCCcCCEe-----ChhhhccCCCCCEEECCC----CcCCeeCHHHhcCCC
Confidence            5677888777777777665  37899999999986542     555789999999999999    998877 88999999


Q ss_pred             CCcEEeccc--ccccCCC-C--------CCCCCccccc-ccccccCCCEEEecCCCcc---ccccccccccccccccccc
Q 039475          117 HLRYLKLSA--VEELSET-C--------YCPSLKRLPQ-GRGKLINLRHLIFDKDYLA---YMANGFERLTSLRTLSGFT  181 (286)
Q Consensus       117 ~Lr~L~L~~--~~~LP~~-~--------~~~~l~~LP~-~i~~L~~L~~L~l~~~~~~---~lP~~i~~L~~L~~L~~~~  181 (286)
                      +|++|++++  ++.+|.. +        ..+.+..+|. .++++++|++|++++|.+.   ..|..++++++|++|++..
T Consensus       101 ~L~~L~Ls~n~l~~l~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~  180 (330)
T 1xku_A          101 KLERLYLSKNQLKELPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIAD  180 (330)
T ss_dssp             TCCEEECCSSCCSBCCSSCCTTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCS
T ss_pred             CCCEEECCCCcCCccChhhcccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCC
Confidence            999999998  7777766 4        2334555554 4688888888888888775   2345588888888887765


Q ss_pred             ccc
Q 039475          182 VAR  184 (286)
Q Consensus       182 ~~~  184 (286)
                      +..
T Consensus       181 n~l  183 (330)
T 1xku_A          181 TNI  183 (330)
T ss_dssp             SCC
T ss_pred             Ccc
Confidence            543

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=99.58  E-value=1.8e-14  Score=132.92  Aligned_cols=189  Identities=20%  Similarity=0.195  Sum_probs=146.9

Q ss_pred             cCCceEEEeecCCCCCC-chhhhcCCCCcEEEeccCCCCCCCcCccchhhhcCCCCCcEEEeecccCCccCcccCc-ccc
Q 039475           36 QEKLRHLTLMLGLPTKF-PVSIFDAKKLRSLSLFYDSKGQSAASPVLQGLFDQLTCLRALKIEELWYGDQTIEIPK-GLE  113 (286)
Q Consensus        36 ~~~~r~ls~~~~~~~~~-~~~~~~l~~Lr~L~l~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~i~~lP~-~i~  113 (286)
                      ..+++.|.+..+.+..+ +..+..+++|++|++++|.....     .+..|.+++.|++|+|++    |.+..+|. .++
T Consensus        98 l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~-----~~~~~~~l~~L~~L~L~~----N~l~~~~~~~~~  168 (452)
T 3zyi_A           98 LHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTVI-----PSGAFEYLSKLRELWLRN----NPIESIPSYAFN  168 (452)
T ss_dssp             CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSBC-----CTTTSSSCTTCCEEECCS----CCCCEECTTTTT
T ss_pred             CCCCCEEECCCCccCCcChhhccCcccCCEEECCCCcCCcc-----ChhhhcccCCCCEEECCC----CCcceeCHhHHh
Confidence            35689999999887554 46788999999999999986542     566789999999999999    99988876 678


Q ss_pred             CCCCCcEEeccc---ccccCCC-C-----------CCCCCcccccccccccCCCEEEecCCCcccc-ccccccccccccc
Q 039475          114 NLIHLRYLKLSA---VEELSET-C-----------YCPSLKRLPQGRGKLINLRHLIFDKDYLAYM-ANGFERLTSLRTL  177 (286)
Q Consensus       114 ~L~~Lr~L~L~~---~~~LP~~-~-----------~~~~l~~LP~~i~~L~~L~~L~l~~~~~~~l-P~~i~~L~~L~~L  177 (286)
                      ++.+|++|++++   +..+|.. .           ..+.+..+| .+..+++|++|++++|.+..+ |..|+.+++|++|
T Consensus       169 ~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L  247 (452)
T 3zyi_A          169 RVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDMP-NLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKL  247 (452)
T ss_dssp             TCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSSCC-CCTTCTTCCEEECTTSCCSEECGGGGTTCTTCCEE
T ss_pred             cCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCcccccc-cccccccccEEECcCCcCcccCcccccCccCCCEE
Confidence            999999999986   6677765 3           234466676 588999999999999999977 5569999999999


Q ss_pred             ccccccccCCccCCCCCCcccccCcccccceeEEcccCCcccchhhhhhcCCCCCCceEEEEeCCCCC
Q 039475          178 SGFTVARVGGKYSSEACNLEGLRNLNHLRQFLRICGLGNLQMRLKINAHLEKKKNLVHLTLDFDKGED  245 (286)
Q Consensus       178 ~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~~L~i~~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~  245 (286)
                      ++..+...       ......+..+++|+ .|.+.+..-   .......+..+++|+.|+|+.|....
T Consensus       248 ~L~~n~l~-------~~~~~~~~~l~~L~-~L~L~~N~l---~~~~~~~~~~l~~L~~L~L~~Np~~C  304 (452)
T 3zyi_A          248 WVMNSQVS-------LIERNAFDGLASLV-ELNLAHNNL---SSLPHDLFTPLRYLVELHLHHNPWNC  304 (452)
T ss_dssp             ECTTSCCC-------EECTTTTTTCTTCC-EEECCSSCC---SCCCTTSSTTCTTCCEEECCSSCEEC
T ss_pred             EeCCCcCc-------eECHHHhcCCCCCC-EEECCCCcC---CccChHHhccccCCCEEEccCCCcCC
Confidence            99877654       33445567777777 788875421   22223457788999999999997643

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=99.57  E-value=2.9e-14  Score=121.32  Aligned_cols=153  Identities=27%  Similarity=0.356  Sum_probs=126.8

Q ss_pred             ccCCceEEEeecCCCCCCc-hhhhcCCCCcEEEeccCCCCCCCcCccchhhhcCCCCCcEEEeecccCCccCcccCc-cc
Q 039475           35 CQEKLRHLTLMLGLPTKFP-VSIFDAKKLRSLSLFYDSKGQSAASPVLQGLFDQLTCLRALKIEELWYGDQTIEIPK-GL  112 (286)
Q Consensus        35 ~~~~~r~ls~~~~~~~~~~-~~~~~l~~Lr~L~l~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~i~~lP~-~i  112 (286)
                      ++..++.+.+..+.+..++ ..+..+++|++|++++|.....     .+..|.+++.|++|++++    +.+..+|. .+
T Consensus        33 ~~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~-----~~~~~~~l~~L~~L~L~~----n~l~~~~~~~~  103 (251)
T 3m19_A           33 IPADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTL-----SAGVFDDLTELGTLGLAN----NQLASLPLGVF  103 (251)
T ss_dssp             CCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCC-----CTTTTTTCTTCCEEECTT----SCCCCCCTTTT
T ss_pred             CCCCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCcc-----CHhHhccCCcCCEEECCC----CcccccChhHh
Confidence            4677999999998886554 4688999999999999987543     667789999999999999    99998875 56


Q ss_pred             cCCCCCcEEecccccccCCCCCCCCCcccccc-cccccCCCEEEecCCCccccccc-ccccccccccccccccccCCccC
Q 039475          113 ENLIHLRYLKLSAVEELSETCYCPSLKRLPQG-RGKLINLRHLIFDKDYLAYMANG-FERLTSLRTLSGFTVARVGGKYS  190 (286)
Q Consensus       113 ~~L~~Lr~L~L~~~~~LP~~~~~~~l~~LP~~-i~~L~~L~~L~l~~~~~~~lP~~-i~~L~~L~~L~~~~~~~~~~~~~  190 (286)
                      +.+.+|++|+|++          +.++.+|.. +.++++|++|++++|.+..+|.+ |+.+++|++|++..+...     
T Consensus       104 ~~l~~L~~L~L~~----------N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~-----  168 (251)
T 3m19_A          104 DHLTQLDKLYLGG----------NQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQ-----  168 (251)
T ss_dssp             TTCTTCCEEECCS----------SCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCS-----
T ss_pred             cccCCCCEEEcCC----------CcCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCC-----
Confidence            9999999999996          778888876 58899999999999999998874 999999999999887654     


Q ss_pred             CCCCCcccccCcccccceeEEccc
Q 039475          191 SEACNLEGLRNLNHLRQFLRICGL  214 (286)
Q Consensus       191 ~~~~~~~~l~~L~~L~~~L~i~~l  214 (286)
                        ......+..+++|+ .|.+.+.
T Consensus       169 --~~~~~~~~~l~~L~-~L~l~~N  189 (251)
T 3m19_A          169 --SVPHGAFDRLGKLQ-TITLFGN  189 (251)
T ss_dssp             --CCCTTTTTTCTTCC-EEECCSC
T ss_pred             --ccCHHHHhCCCCCC-EEEeeCC
Confidence              33334567777777 7887754

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=99.57  E-value=1.1e-14  Score=138.88  Aligned_cols=79  Identities=27%  Similarity=0.275  Sum_probs=36.7

Q ss_pred             CceEEEeecCCCCCCchhhhcCCCCcEEEeccCCCCCCCcCccchhhhcCCCCCcEEEeecccCCccCc-ccCc-cccCC
Q 039475           38 KLRHLTLMLGLPTKFPVSIFDAKKLRSLSLFYDSKGQSAASPVLQGLFDQLTCLRALKIEELWYGDQTI-EIPK-GLENL  115 (286)
Q Consensus        38 ~~r~ls~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~i~-~lP~-~i~~L  115 (286)
                      +.+.+.+..+....+|..+..+++|++|++.++.....     .|..+.+++.|++|++++    +.+. .+|. .++++
T Consensus       279 ~L~~L~l~~n~l~~lp~~l~~l~~L~~L~l~~n~l~~~-----~~~~~~~l~~L~~L~l~~----n~~~~~~~~~~~~~l  349 (606)
T 3t6q_A          279 GLQELDLTATHLSELPSGLVGLSTLKKLVLSANKFENL-----CQISASNFPSLTHLSIKG----NTKRLELGTGCLENL  349 (606)
T ss_dssp             TCSEEECTTSCCSCCCSSCCSCTTCCEEECTTCCCSBG-----GGGCGGGCTTCSEEECCS----CSSCCBCCSSTTTTC
T ss_pred             CCCEEeccCCccCCCChhhcccccCCEEECccCCcCcC-----chhhhhccCcCCEEECCC----CCcccccchhhhhcc
Confidence            44555555555545555555555555555555543321     233344444444444444    4332 3332 24444


Q ss_pred             CCCcEEeccc
Q 039475          116 IHLRYLKLSA  125 (286)
Q Consensus       116 ~~Lr~L~L~~  125 (286)
                      ++|++|++++
T Consensus       350 ~~L~~L~l~~  359 (606)
T 3t6q_A          350 ENLRELDLSH  359 (606)
T ss_dssp             TTCCEEECCS
T ss_pred             CcCCEEECCC
Confidence            4444444444

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=99.57  E-value=7.4e-15  Score=139.97  Aligned_cols=140  Identities=12%  Similarity=0.081  Sum_probs=106.1

Q ss_pred             cccCCceEEEeecCCCCCC-chhhhcCCCCcEEEeccCCCCCCCcCccchhhhcCCCCCcEEEeecccCCccCccc-Ccc
Q 039475           34 SCQEKLRHLTLMLGLPTKF-PVSIFDAKKLRSLSLFYDSKGQSAASPVLQGLFDQLTCLRALKIEELWYGDQTIEI-PKG  111 (286)
Q Consensus        34 ~~~~~~r~ls~~~~~~~~~-~~~~~~l~~Lr~L~l~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~i~~l-P~~  111 (286)
                      .++..++++.+..+.+..+ |..+.++++|++|+++++.....     .|..|.++++|++|+|++    |.+..+ |..
T Consensus        30 ~l~~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~-----~~~~~~~l~~L~~L~Ls~----n~l~~~~~~~  100 (606)
T 3t6q_A           30 TLPNSTECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWI-----HEDTFQSQHRLDTLVLTA----NPLIFMAETA  100 (606)
T ss_dssp             TSCTTCCEEECTTCCCSEECTTTSTTCTTCSEEECTTCCCCEE-----CTTTTTTCTTCCEEECTT----CCCSEECTTT
T ss_pred             CCCCcCcEEEccCCccCcCChhHhccCccceEEECCCCcccee-----ChhhccCccccCeeeCCC----CcccccChhh
Confidence            3567899999999988665 66889999999999999976542     688899999999999999    988765 778


Q ss_pred             ccCCCCCcEEeccc--ccccCC-C-CCCC----------CCcccc-cccccccCCCEEEecCCCccccc-cccccccccc
Q 039475          112 LENLIHLRYLKLSA--VEELSE-T-CYCP----------SLKRLP-QGRGKLINLRHLIFDKDYLAYMA-NGFERLTSLR  175 (286)
Q Consensus       112 i~~L~~Lr~L~L~~--~~~LP~-~-~~~~----------~l~~LP-~~i~~L~~L~~L~l~~~~~~~lP-~~i~~L~~L~  175 (286)
                      ++++++|++|++++  +..++. . ..+.          .+..++ ..+..+++|++|++++|.+..++ ..++.+++|+
T Consensus       101 ~~~l~~L~~L~L~~n~i~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~  180 (606)
T 3t6q_A          101 LSGPKALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQAT  180 (606)
T ss_dssp             TSSCTTCCEEECTTSCCSCGGGSCCTTCTTCCEEECCSSCCCCCCCCTTCCCTTCCEEECCSSCCCEECHHHHHTTTTCC
T ss_pred             hcccccccEeeccccCcccCCcchhccCCcccEEECCCCcccccCcccccCCcccCEEEcccCcccccChhhhhhhcccc
Confidence            99999999999998  666533 3 3322          344442 23444888888888888888664 4488888887


Q ss_pred             --ccccccc
Q 039475          176 --TLSGFTV  182 (286)
Q Consensus       176 --~L~~~~~  182 (286)
                        +|++..+
T Consensus       181 ~l~L~l~~n  189 (606)
T 3t6q_A          181 NLSLNLNGN  189 (606)
T ss_dssp             SEEEECTTC
T ss_pred             eeEEecCCC
Confidence              5554443

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=99.57  E-value=7.3e-15  Score=136.19  Aligned_cols=188  Identities=18%  Similarity=0.139  Sum_probs=105.8

Q ss_pred             CCceEEEeecCCCCCCchh-hhcCCCCcEEEeccCCCCCCCcCccchhhhcCCCCCcEEEeecccCCccCccc-CccccC
Q 039475           37 EKLRHLTLMLGLPTKFPVS-IFDAKKLRSLSLFYDSKGQSAASPVLQGLFDQLTCLRALKIEELWYGDQTIEI-PKGLEN  114 (286)
Q Consensus        37 ~~~r~ls~~~~~~~~~~~~-~~~l~~Lr~L~l~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~i~~l-P~~i~~  114 (286)
                      .+.++|.+..+....++.. +..+++|++|++++|.....     .+..|.++++|++|++++    +.+..+ |..+++
T Consensus        80 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~-----~~~~~~~l~~L~~L~l~~----n~l~~~~~~~~~~  150 (477)
T 2id5_A           80 FNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKIVIL-----LDYMFQDLYNLKSLEVGD----NDLVYISHRAFSG  150 (477)
T ss_dssp             TTCCEEECCSSCCCSCCTTSSTTCTTCCEEECTTSCCCEE-----CTTTTTTCTTCCEEEECC----TTCCEECTTSSTT
T ss_pred             ccCCEEECCCCcCCccCcccccCCCCCCEEECCCCccccC-----ChhHccccccCCEEECCC----CccceeChhhccC
Confidence            4577777777766555543 56677777777777654322     344455555555555555    544433 224444


Q ss_pred             CCCCcEEeccc--ccccC------------------------CC-C------------CCCCCcccccccccccCCCEEE
Q 039475          115 LIHLRYLKLSA--VEELS------------------------ET-C------------YCPSLKRLPQGRGKLINLRHLI  155 (286)
Q Consensus       115 L~~Lr~L~L~~--~~~LP------------------------~~-~------------~~~~l~~LP~~i~~L~~L~~L~  155 (286)
                      +.+|++|++++  +..+|                        .. .            +|..+..+|..+....+|++|+
T Consensus       151 l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~  230 (477)
T 2id5_A          151 LNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLS  230 (477)
T ss_dssp             CTTCCEEEEESCCCSSCCHHHHTTCTTCCEEEEESCCCCEECTTCSCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEE
T ss_pred             CCCCCEEECCCCcCcccChhHhcccCCCcEEeCCCCcCcEeChhhcccCcccceeeCCCCccccccCcccccCccccEEE
Confidence            44555554444  33333                        22 1            1222334444444445677777


Q ss_pred             ecCCCcccccc-cccccccccccccccccccCCccCCCCCCcccccCcccccceeEEcccCCcccchhhhhhcCCCCCCc
Q 039475          156 FDKDYLAYMAN-GFERLTSLRTLSGFTVARVGGKYSSEACNLEGLRNLNHLRQFLRICGLGNLQMRLKINAHLEKKKNLV  234 (286)
Q Consensus       156 l~~~~~~~lP~-~i~~L~~L~~L~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~~L~i~~l~~~~~~~~~~~~l~~l~~L~  234 (286)
                      +++|.+..+|. .++.+++|++|++..+...       ......+..+++|+ .|.+.+..-   ....+..+..+++|+
T Consensus       231 l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~-------~~~~~~~~~l~~L~-~L~L~~n~l---~~~~~~~~~~l~~L~  299 (477)
T 2id5_A          231 ITHCNLTAVPYLAVRHLVYLRFLNLSYNPIS-------TIEGSMLHELLRLQ-EIQLVGGQL---AVVEPYAFRGLNYLR  299 (477)
T ss_dssp             EESSCCCSCCHHHHTTCTTCCEEECCSSCCC-------EECTTSCTTCTTCC-EEECCSSCC---SEECTTTBTTCTTCC
T ss_pred             CcCCcccccCHHHhcCccccCeeECCCCcCC-------ccChhhccccccCC-EEECCCCcc---ceECHHHhcCcccCC
Confidence            77777777764 3777788888877766433       22233455566666 566653311   223345667777777


Q ss_pred             eEEEEeCCCC
Q 039475          235 HLTLDFDKGE  244 (286)
Q Consensus       235 ~L~L~~~~~~  244 (286)
                      .|+|+.|..+
T Consensus       300 ~L~L~~N~l~  309 (477)
T 2id5_A          300 VLNVSGNQLT  309 (477)
T ss_dssp             EEECCSSCCS
T ss_pred             EEECCCCcCc
Confidence            7887777665

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=99.57  E-value=1.6e-14  Score=139.62  Aligned_cols=140  Identities=15%  Similarity=0.224  Sum_probs=105.7

Q ss_pred             ccCCceEEEeecCCCCCCch-hhhcCCCCcEEEeccCCCCCCCcCccchhhhcCCCCCcEEEeecccCCccCcccCc-cc
Q 039475           35 CQEKLRHLTLMLGLPTKFPV-SIFDAKKLRSLSLFYDSKGQSAASPVLQGLFDQLTCLRALKIEELWYGDQTIEIPK-GL  112 (286)
Q Consensus        35 ~~~~~r~ls~~~~~~~~~~~-~~~~l~~Lr~L~l~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~i~~lP~-~i  112 (286)
                      ++.+++++.+..+.+..+++ .+.++++|++|+++++.....     .|..|.+++.|++|+|++    +.+..+|. .|
T Consensus        23 ~~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~-----~~~~~~~l~~L~~L~L~~----n~l~~l~~~~~   93 (680)
T 1ziw_A           23 LPTNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKL-----EPELCQKLPMLKVLNLQH----NELSQLSDKTF   93 (680)
T ss_dssp             SCTTCSEEECCSSCCCCCCGGGGGGGTTCSEEECCSSCCCCC-----CTTHHHHCTTCCEEECCS----SCCCCCCTTTT
T ss_pred             cCCCCcEEECCCCCCCCcCHHHHhCCCcCcEEECCCCccCcc-----CHHHHhcccCcCEEECCC----CccCccChhhh
Confidence            46789999999998866654 589999999999999876543     688899999999999999    99999987 59


Q ss_pred             cCCCCCcEEeccc--ccccCCC--CCCCCCc----------c-cccccccccCCCEEEecCCCccccccc-cc--ccccc
Q 039475          113 ENLIHLRYLKLSA--VEELSET--CYCPSLK----------R-LPQGRGKLINLRHLIFDKDYLAYMANG-FE--RLTSL  174 (286)
Q Consensus       113 ~~L~~Lr~L~L~~--~~~LP~~--~~~~~l~----------~-LP~~i~~L~~L~~L~l~~~~~~~lP~~-i~--~L~~L  174 (286)
                      +++.+|++|++++  +..+|..  +.+.+++          . .|..++++++|++|++++|.+..++.. ++  .+++|
T Consensus        94 ~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L  173 (680)
T 1ziw_A           94 AFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSL  173 (680)
T ss_dssp             TTCTTCSEEECCSSCCCCCCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSCCCCBCHHHHGGGTTCEE
T ss_pred             ccCCCCCEEECCCCccCccChhHccccCCCCEEECCCCcccccCchhhcccccCCEEEccCCcccccCHHHhhccccccc
Confidence            9999999999997  6666643  3333332          2 245567777788888777777766543 33  44677


Q ss_pred             ccccccccc
Q 039475          175 RTLSGFTVA  183 (286)
Q Consensus       175 ~~L~~~~~~  183 (286)
                      ++|++..+.
T Consensus       174 ~~L~L~~n~  182 (680)
T 1ziw_A          174 KKLELSSNQ  182 (680)
T ss_dssp             SEEECTTCC
T ss_pred             cEEECCCCc
Confidence            777665553

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=99.57  E-value=1.3e-14  Score=143.52  Aligned_cols=82  Identities=22%  Similarity=0.277  Sum_probs=47.9

Q ss_pred             CceEEEeecCCCCCCch--hhhcCCCCcEEEeccCCCCCCCcCccchhhhcCCCCCcEEEeecccCCccCcccCccccCC
Q 039475           38 KLRHLTLMLGLPTKFPV--SIFDAKKLRSLSLFYDSKGQSAASPVLQGLFDQLTCLRALKIEELWYGDQTIEIPKGLENL  115 (286)
Q Consensus        38 ~~r~ls~~~~~~~~~~~--~~~~l~~Lr~L~l~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~i~~lP~~i~~L  115 (286)
                      ++++|.+..+.+..+|.  .+.++++|+.|++++|....      +| .|..++.|++|+|++    |.+..+|..++++
T Consensus       549 ~L~~L~Ls~N~L~~ip~~~~l~~L~~L~~L~Ls~N~l~~------lp-~~~~L~~L~~L~Ls~----N~l~~lp~~l~~l  617 (876)
T 4ecn_A          549 KIQIFYMGYNNLEEFPASASLQKMVKLGLLDCVHNKVRH------LE-AFGTNVKLTDLKLDY----NQIEEIPEDFCAF  617 (876)
T ss_dssp             TCCEEECCSSCCCBCCCHHHHTTCTTCCEEECTTSCCCB------CC-CCCTTSEESEEECCS----SCCSCCCTTSCEE
T ss_pred             CccEEEeeCCcCCccCChhhhhcCCCCCEEECCCCCccc------ch-hhcCCCcceEEECcC----CccccchHHHhhc
Confidence            56666666666555565  56666666666666665441      44 455556666666666    5555556556555


Q ss_pred             CC-CcEEeccc--ccccC
Q 039475          116 IH-LRYLKLSA--VEELS  130 (286)
Q Consensus       116 ~~-Lr~L~L~~--~~~LP  130 (286)
                      .+ |++|+|++  +..+|
T Consensus       618 ~~~L~~L~Ls~N~L~~lp  635 (876)
T 4ecn_A          618 TDQVEGLGFSHNKLKYIP  635 (876)
T ss_dssp             CTTCCEEECCSSCCCSCC
T ss_pred             cccCCEEECcCCCCCcCc
Confidence            55 55555555  44444

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=99.56  E-value=9e-14  Score=121.08  Aligned_cols=170  Identities=19%  Similarity=0.164  Sum_probs=137.3

Q ss_pred             cCCceEEEeecCCCCCCchhhhcCCCCcEEEeccCCCCCCCcCccchhhhcCCCCCcEEEeecccCCccCcccCccccCC
Q 039475           36 QEKLRHLTLMLGLPTKFPVSIFDAKKLRSLSLFYDSKGQSAASPVLQGLFDQLTCLRALKIEELWYGDQTIEIPKGLENL  115 (286)
Q Consensus        36 ~~~~r~ls~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~i~~lP~~i~~L  115 (286)
                      ...++.+.+..+.+..++ .+..+++|++|++++|....      ++. +.++++|++|++++    |.+..+|. ++.+
T Consensus        45 l~~L~~L~l~~~~i~~~~-~~~~l~~L~~L~L~~n~l~~------~~~-l~~l~~L~~L~l~~----n~l~~~~~-l~~l  111 (291)
T 1h6t_A           45 LNSIDQIIANNSDIKSVQ-GIQYLPNVTKLFLNGNKLTD------IKP-LANLKNLGWLFLDE----NKVKDLSS-LKDL  111 (291)
T ss_dssp             HHTCCEEECTTSCCCCCT-TGGGCTTCCEEECCSSCCCC------CGG-GTTCTTCCEEECCS----SCCCCGGG-GTTC
T ss_pred             cCcccEEEccCCCcccCh-hHhcCCCCCEEEccCCccCC------Ccc-cccCCCCCEEECCC----CcCCCChh-hccC
Confidence            456899999988887664 48889999999999998654      444 88999999999999    99988774 9999


Q ss_pred             CCCcEEecccccccCCCCCCCCCcccccccccccCCCEEEecCCCcccccccccccccccccccccccccCCccCCCCCC
Q 039475          116 IHLRYLKLSAVEELSETCYCPSLKRLPQGRGKLINLRHLIFDKDYLAYMANGFERLTSLRTLSGFTVARVGGKYSSEACN  195 (286)
Q Consensus       116 ~~Lr~L~L~~~~~LP~~~~~~~l~~LP~~i~~L~~L~~L~l~~~~~~~lP~~i~~L~~L~~L~~~~~~~~~~~~~~~~~~  195 (286)
                      .+|++|++++          +.+..+| .++.+++|++|++++|.+..+ ..++.+++|++|++..+...         .
T Consensus       112 ~~L~~L~L~~----------n~i~~~~-~l~~l~~L~~L~l~~n~l~~~-~~l~~l~~L~~L~L~~N~l~---------~  170 (291)
T 1h6t_A          112 KKLKSLSLEH----------NGISDIN-GLVHLPQLESLYLGNNKITDI-TVLSRLTKLDTLSLEDNQIS---------D  170 (291)
T ss_dssp             TTCCEEECTT----------SCCCCCG-GGGGCTTCCEEECCSSCCCCC-GGGGGCTTCSEEECCSSCCC---------C
T ss_pred             CCCCEEECCC----------CcCCCCh-hhcCCCCCCEEEccCCcCCcc-hhhccCCCCCEEEccCCccc---------c
Confidence            9999999986          6687775 689999999999999999988 57999999999999877544         2


Q ss_pred             cccccCcccccceeEEcccCCcccchhhhhhcCCCCCCceEEEEeCCCCC
Q 039475          196 LEGLRNLNHLRQFLRICGLGNLQMRLKINAHLEKKKNLVHLTLDFDKGED  245 (286)
Q Consensus       196 ~~~l~~L~~L~~~L~i~~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~  245 (286)
                      +..+..+++|+ .|.+.+..- ..   + ..+..+++|+.|+++.|....
T Consensus       171 ~~~l~~l~~L~-~L~L~~N~i-~~---l-~~l~~l~~L~~L~l~~n~i~~  214 (291)
T 1h6t_A          171 IVPLAGLTKLQ-NLYLSKNHI-SD---L-RALAGLKNLDVLELFSQECLN  214 (291)
T ss_dssp             CGGGTTCTTCC-EEECCSSCC-CB---C-GGGTTCTTCSEEEEEEEEEEC
T ss_pred             chhhcCCCccC-EEECCCCcC-CC---C-hhhccCCCCCEEECcCCcccC
Confidence            22377777777 788775411 11   2 348889999999999997653

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=99.56  E-value=1e-14  Score=144.44  Aligned_cols=138  Identities=16%  Similarity=0.183  Sum_probs=97.6

Q ss_pred             cCCceEEEeecCCCCC------------------Cchhhh--cCCCCcEEEeccCCCCCCCcCccchhhhcCCCCCcEEE
Q 039475           36 QEKLRHLTLMLGLPTK------------------FPVSIF--DAKKLRSLSLFYDSKGQSAASPVLQGLFDQLTCLRALK   95 (286)
Q Consensus        36 ~~~~r~ls~~~~~~~~------------------~~~~~~--~l~~Lr~L~l~~~~~~~~~~~~~~~~~~~~l~~Lr~L~   95 (286)
                      ..+.+.|.+..+.+..                  +|..+.  ++++|++|++.+|.....     +|..|.+++.|++|+
T Consensus       447 L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~-----iP~~l~~L~~L~~L~  521 (876)
T 4ecn_A          447 LTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQ-----LPDFLYDLPELQSLN  521 (876)
T ss_dssp             CTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCS-----CCGGGGGCSSCCEEE
T ss_pred             CCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCcc-----ChHHHhCCCCCCEEE
Confidence            3567888888888765                  787776  888999999988875543     777888888888888


Q ss_pred             eecccCCcc-Ccc--cCccccCCC-------CCcEEeccc--ccccCC--C-C----------CCCCCcccccccccccC
Q 039475           96 IEELWYGDQ-TIE--IPKGLENLI-------HLRYLKLSA--VEELSE--T-C----------YCPSLKRLPQGRGKLIN  150 (286)
Q Consensus        96 L~~~~~~~~-i~~--lP~~i~~L~-------~Lr~L~L~~--~~~LP~--~-~----------~~~~l~~LP~~i~~L~~  150 (286)
                      |++    |. +..  +|..++++.       +|++|++++  +..+|.  . +          ..+.+..+| .++++++
T Consensus       522 Ls~----N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~~ip~~~~l~~L~~L~~L~Ls~N~l~~lp-~~~~L~~  596 (876)
T 4ecn_A          522 IAC----NRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEEFPASASLQKMVKLGLLDCVHNKVRHLE-AFGTNVK  596 (876)
T ss_dssp             CTT----CTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCCBCCCHHHHTTCTTCCEEECTTSCCCBCC-CCCTTSE
T ss_pred             CcC----CCCcccccchHHHHhhhhcccccCCccEEEeeCCcCCccCChhhhhcCCCCCEEECCCCCcccch-hhcCCCc
Confidence            888    76 663  777777666       888888887  556666  3 3          122344566 6666666


Q ss_pred             CCEEEecCCCccccccccccccc-cccccccccc
Q 039475          151 LRHLIFDKDYLAYMANGFERLTS-LRTLSGFTVA  183 (286)
Q Consensus       151 L~~L~l~~~~~~~lP~~i~~L~~-L~~L~~~~~~  183 (286)
                      |++|++++|.+..+|.+++++++ |++|++..+.
T Consensus       597 L~~L~Ls~N~l~~lp~~l~~l~~~L~~L~Ls~N~  630 (876)
T 4ecn_A          597 LTDLKLDYNQIEEIPEDFCAFTDQVEGLGFSHNK  630 (876)
T ss_dssp             ESEEECCSSCCSCCCTTSCEECTTCCEEECCSSC
T ss_pred             ceEEECcCCccccchHHHhhccccCCEEECcCCC
Confidence            66666666666666666666666 6666665554

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=99.56  E-value=4.5e-14  Score=132.22  Aligned_cols=78  Identities=21%  Similarity=0.153  Sum_probs=67.8

Q ss_pred             cCCceEEEeecCCCCCC-chhhhcCCCCcEEEeccCCCCCCCcCccchhhhcCCCCCcEEEeecccCCccCcc--cCccc
Q 039475           36 QEKLRHLTLMLGLPTKF-PVSIFDAKKLRSLSLFYDSKGQSAASPVLQGLFDQLTCLRALKIEELWYGDQTIE--IPKGL  112 (286)
Q Consensus        36 ~~~~r~ls~~~~~~~~~-~~~~~~l~~Lr~L~l~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~i~~--lP~~i  112 (286)
                      ..+.+++.+..+.+..+ |..+..+++|++|++++|....      +|..  .++.|++|++++    |.+..  +|..+
T Consensus        44 l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~------lp~~--~l~~L~~L~L~~----N~l~~~~~p~~~  111 (520)
T 2z7x_B           44 LSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNKLVK------ISCH--PTVNLKHLDLSF----NAFDALPICKEF  111 (520)
T ss_dssp             CTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSSCCCE------EECC--CCCCCSEEECCS----SCCSSCCCCGGG
T ss_pred             cccccEEecCCCccCCcChHHhhcccCCCEEecCCCceee------cCcc--ccCCccEEeccC----Cccccccchhhh
Confidence            46789999999988665 6789999999999999998653      5655  899999999999    99875  67899


Q ss_pred             cCCCCCcEEeccc
Q 039475          113 ENLIHLRYLKLSA  125 (286)
Q Consensus       113 ~~L~~Lr~L~L~~  125 (286)
                      +++++|++|++++
T Consensus       112 ~~l~~L~~L~L~~  124 (520)
T 2z7x_B          112 GNMSQLKFLGLST  124 (520)
T ss_dssp             GGCTTCCEEEEEE
T ss_pred             ccCCcceEEEecC
Confidence            9999999999987

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=99.56  E-value=1.6e-14  Score=136.05  Aligned_cols=171  Identities=22%  Similarity=0.205  Sum_probs=135.5

Q ss_pred             EeecCCCCCCchhhhcCCCCcEEEeccCCCCCCCcCccchhhhcCCCCCcEEEeecccCCccCcccC-ccccCCCCCcEE
Q 039475           43 TLMLGLPTKFPVSIFDAKKLRSLSLFYDSKGQSAASPVLQGLFDQLTCLRALKIEELWYGDQTIEIP-KGLENLIHLRYL  121 (286)
Q Consensus        43 s~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~i~~lP-~~i~~L~~Lr~L  121 (286)
                      ....+....+|..+.  ++|++|+++++.....     .|..|.++++|++|++++    +.+..+| ..++++.+|++|
T Consensus        11 ~~~~~~l~~ip~~~~--~~L~~L~Ls~n~l~~~-----~~~~~~~l~~L~~L~Ls~----n~i~~~~~~~~~~l~~L~~L   79 (549)
T 2z81_A           11 DGRSRSFTSIPSGLT--AAMKSLDLSFNKITYI-----GHGDLRACANLQVLILKS----SRINTIEGDAFYSLGSLEHL   79 (549)
T ss_dssp             ECTTSCCSSCCSCCC--TTCCEEECCSSCCCEE-----CSSTTSSCTTCCEEECTT----SCCCEECTTTTTTCTTCCEE
T ss_pred             ECCCCccccccccCC--CCccEEECcCCccCcc-----ChhhhhcCCcccEEECCC----CCcCccChhhccccccCCEE
Confidence            444455566777653  7999999999986542     567889999999999999    9988776 689999999999


Q ss_pred             ecccccccCCCCCCCCCcccccc-cccccCCCEEEecCCCccc--ccccccccccccccccccccccCCccCCCCCCccc
Q 039475          122 KLSAVEELSETCYCPSLKRLPQG-RGKLINLRHLIFDKDYLAY--MANGFERLTSLRTLSGFTVARVGGKYSSEACNLEG  198 (286)
Q Consensus       122 ~L~~~~~LP~~~~~~~l~~LP~~-i~~L~~L~~L~l~~~~~~~--lP~~i~~L~~L~~L~~~~~~~~~~~~~~~~~~~~~  198 (286)
                      ++++          +.+..+|.. ++++++|++|++++|.+..  +|..++++++|++|++..+...      .......
T Consensus        80 ~Ls~----------n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~------~~~~~~~  143 (549)
T 2z81_A           80 DLSD----------NHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETF------SEIRRID  143 (549)
T ss_dssp             ECTT----------SCCCSCCHHHHTTCTTCCEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSC------CEECTTT
T ss_pred             ECCC----------CccCccCHHHhccCCCCcEEECCCCcccccchhhhhhccCCccEEECCCCccc------cccCHhh
Confidence            9996          678888765 9999999999999999985  4677999999999998877532      1222346


Q ss_pred             ccCcccccceeEEcccCCcccchhhhhhcCCCCCCceEEEEeCCCC
Q 039475          199 LRNLNHLRQFLRICGLGNLQMRLKINAHLEKKKNLVHLTLDFDKGE  244 (286)
Q Consensus       199 l~~L~~L~~~L~i~~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~  244 (286)
                      +.++++|+ .|.+.+..-   ....+..+..+++|++|++++|...
T Consensus       144 ~~~l~~L~-~L~L~~n~l---~~~~~~~l~~l~~L~~L~l~~n~~~  185 (549)
T 2z81_A          144 FAGLTSLN-ELEIKALSL---RNYQSQSLKSIRDIHHLTLHLSESA  185 (549)
T ss_dssp             TTTCCEEE-EEEEEETTC---CEECTTTTTTCSEEEEEEEECSBST
T ss_pred             hhcccccC-eeeccCCcc---cccChhhhhccccCceEecccCccc
Confidence            77778787 788875322   3345677889999999999999875

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=99.55  E-value=3.8e-14  Score=134.20  Aligned_cols=124  Identities=19%  Similarity=0.158  Sum_probs=95.2

Q ss_pred             ceEEEeecCCCCCCchhhhcCCCCcEEEeccCCCCCCCcCccchhhhcCCCCCcEEEeecccCCccCccc-CccccCCCC
Q 039475           39 LRHLTLMLGLPTKFPVSIFDAKKLRSLSLFYDSKGQSAASPVLQGLFDQLTCLRALKIEELWYGDQTIEI-PKGLENLIH  117 (286)
Q Consensus        39 ~r~ls~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~i~~l-P~~i~~L~~  117 (286)
                      .+++.+..+....+|..+.  ++|++|++++|.....     .+..|.++++|++|+|++    |.+..+ |..++++++
T Consensus        33 ~~~l~ls~~~L~~ip~~~~--~~L~~L~Ls~N~i~~~-----~~~~~~~l~~L~~L~Ls~----N~l~~~~~~~~~~l~~  101 (562)
T 3a79_B           33 ESMVDYSNRNLTHVPKDLP--PRTKALSLSQNSISEL-----RMPDISFLSELRVLRLSH----NRIRSLDFHVFLFNQD  101 (562)
T ss_dssp             CCEEECTTSCCCSCCTTSC--TTCCEEECCSSCCCCC-----CGGGTTTCTTCCEEECCS----CCCCEECTTTTTTCTT
T ss_pred             CcEEEcCCCCCccCCCCCC--CCcCEEECCCCCcccc-----ChhhhccCCCccEEECCC----CCCCcCCHHHhCCCCC
Confidence            4778888777777777653  7888888888876542     556788888888888888    888776 567888888


Q ss_pred             CcEEecccccccCCCCCCCCCcccccccccccCCCEEEecCCCccccc--cccccccccccccccccccc
Q 039475          118 LRYLKLSAVEELSETCYCPSLKRLPQGRGKLINLRHLIFDKDYLAYMA--NGFERLTSLRTLSGFTVARV  185 (286)
Q Consensus       118 Lr~L~L~~~~~LP~~~~~~~l~~LP~~i~~L~~L~~L~l~~~~~~~lP--~~i~~L~~L~~L~~~~~~~~  185 (286)
                      |++|++++          +.++.+|..  .+++|++|++++|.+..+|  ..|+++++|++|++..+...
T Consensus       102 L~~L~Ls~----------N~l~~lp~~--~l~~L~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~  159 (562)
T 3a79_B          102 LEYLDVSH----------NRLQNISCC--PMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFR  159 (562)
T ss_dssp             CCEEECTT----------SCCCEECSC--CCTTCSEEECCSSCCSBCCCCGGGGGCTTCCEEEEECSBCC
T ss_pred             CCEEECCC----------CcCCccCcc--ccccCCEEECCCCCccccCchHhhcccCcccEEecCCCccc
Confidence            88888885          667788876  7888888888888877654  56888888888887765543

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=99.55  E-value=3.5e-14  Score=134.06  Aligned_cols=179  Identities=18%  Similarity=0.177  Sum_probs=129.5

Q ss_pred             ccCCceEEEeecCCCCCC-chhhhcCCCCcEEEeccCCCCCCCcCccchhhhcCCCCCcEEEeecccCCccCcccC-ccc
Q 039475           35 CQEKLRHLTLMLGLPTKF-PVSIFDAKKLRSLSLFYDSKGQSAASPVLQGLFDQLTCLRALKIEELWYGDQTIEIP-KGL  112 (286)
Q Consensus        35 ~~~~~r~ls~~~~~~~~~-~~~~~~l~~Lr~L~l~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~i~~lP-~~i  112 (286)
                      ++..++++.+..+.+..+ +..+..+++|++|+++++.....     .+..|.++++|++|++++    +.+..+| ..|
T Consensus        26 l~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~i-----~~~~~~~l~~L~~L~L~~----n~l~~~~~~~~   96 (570)
T 2z63_A           26 LPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTI-----EDGAYQSLSHLSTLILTG----NPIQSLALGAF   96 (570)
T ss_dssp             SCSSCCEEECCSCCCCEECTTTTTTCSSCCEEECTTCCCCEE-----CTTTTTTCTTCCEEECTT----CCCCEECTTTT
T ss_pred             ccccccEEEccCCccCccChhHhhCCCCceEEECCCCcCCcc-----CcccccCchhCCEEeCcC----CcCCccCHhhh
Confidence            567899999999888655 45788999999999999975432     567899999999999999    9988776 689


Q ss_pred             cCCCCCcEEecccccccCCCCCCCCCccccc-ccccccCCCEEEecCCCccc--ccccccccccccccccccccccCCcc
Q 039475          113 ENLIHLRYLKLSAVEELSETCYCPSLKRLPQ-GRGKLINLRHLIFDKDYLAY--MANGFERLTSLRTLSGFTVARVGGKY  189 (286)
Q Consensus       113 ~~L~~Lr~L~L~~~~~LP~~~~~~~l~~LP~-~i~~L~~L~~L~l~~~~~~~--lP~~i~~L~~L~~L~~~~~~~~~~~~  189 (286)
                      +++.+|++|++++          +.+..+|. .++++++|++|++++|.+..  +|..|+++++|++|++..+...    
T Consensus        97 ~~l~~L~~L~L~~----------n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~l~----  162 (570)
T 2z63_A           97 SGLSSLQKLVAVE----------TNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQ----  162 (570)
T ss_dssp             TTCTTCCEEECTT----------SCCCCSTTCSCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSCCC----
T ss_pred             cCccccccccccc----------cccccCCCccccccccccEEecCCCccceecChhhhcccCCCCEEeCcCCccc----
Confidence            9999999999986          56777775 58888888999888888775  6778888888888888766543    


Q ss_pred             CCCCCCcccccCcccc----cceeEEcccCCcccchhhhhhcCCCCCCceEEEEeCCCC
Q 039475          190 SSEACNLEGLRNLNHL----RQFLRICGLGNLQMRLKINAHLEKKKNLVHLTLDFDKGE  244 (286)
Q Consensus       190 ~~~~~~~~~l~~L~~L----~~~L~i~~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~  244 (286)
                         ......++.+++|    . .+.+.+..-   ....+..+... +|+.|+++.|...
T Consensus       163 ---~~~~~~~~~l~~L~~~~~-~L~l~~n~l---~~~~~~~~~~~-~L~~L~l~~n~~~  213 (570)
T 2z63_A          163 ---SIYCTDLRVLHQMPLLNL-SLDLSLNPM---NFIQPGAFKEI-RLHKLTLRNNFDS  213 (570)
T ss_dssp             ---EECGGGGHHHHTCTTCCC-EEECTTCCC---CEECTTTTTTC-EEEEEEEESCCSC
T ss_pred             ---eecHHHccchhccchhhh-hcccCCCCc---eecCHHHhccC-cceeEeccccccc
Confidence               2223344455544    3 344443211   11122333333 6777777776443

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=99.54  E-value=3.3e-14  Score=119.94  Aligned_cols=181  Identities=14%  Similarity=0.132  Sum_probs=136.3

Q ss_pred             ccCCceEEEeecCCCCCCch-hhhcCCCCcEEEeccCC-CCCCCcCccchhhhcCCCCCcEEEeecccCCccCcccCc-c
Q 039475           35 CQEKLRHLTLMLGLPTKFPV-SIFDAKKLRSLSLFYDS-KGQSAASPVLQGLFDQLTCLRALKIEELWYGDQTIEIPK-G  111 (286)
Q Consensus        35 ~~~~~r~ls~~~~~~~~~~~-~~~~l~~Lr~L~l~~~~-~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~i~~lP~-~  111 (286)
                      ++..++.+.+..+.+..+++ .+..+++|++|++.++. ....     .+..|.+++.|++|+++++   +.+..+|. .
T Consensus        29 ~~~~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i-----~~~~f~~l~~L~~L~l~~~---n~l~~i~~~~  100 (239)
T 2xwt_C           29 LPPSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQL-----ESHSFYNLSKVTHIEIRNT---RNLTYIDPDA  100 (239)
T ss_dssp             CCTTCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEE-----CTTTEESCTTCCEEEEEEE---TTCCEECTTS
T ss_pred             CCCcccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCccee-----CHhHcCCCcCCcEEECCCC---CCeeEcCHHH
Confidence            56689999999998876665 67889999999999986 4431     4557899999999999861   45887774 7


Q ss_pred             ccCCCCCcEEecccccccCCCCCCCCCcccccccccccCCC---EEEecCC-Cccccccc-cccccccc-cccccccccc
Q 039475          112 LENLIHLRYLKLSAVEELSETCYCPSLKRLPQGRGKLINLR---HLIFDKD-YLAYMANG-FERLTSLR-TLSGFTVARV  185 (286)
Q Consensus       112 i~~L~~Lr~L~L~~~~~LP~~~~~~~l~~LP~~i~~L~~L~---~L~l~~~-~~~~lP~~-i~~L~~L~-~L~~~~~~~~  185 (286)
                      ++++++|++|++++          +.++.+|. ++.+++|+   +|++++| .+..+|.+ |+.+++|+ +|++..+...
T Consensus       101 f~~l~~L~~L~l~~----------n~l~~lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~  169 (239)
T 2xwt_C          101 LKELPLLKFLGIFN----------TGLKMFPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFT  169 (239)
T ss_dssp             EECCTTCCEEEEEE----------ECCCSCCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCC
T ss_pred             hCCCCCCCEEeCCC----------CCCccccc-cccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCc
Confidence            89999999999986          66888887 88888888   9999999 99988876 99999999 9988766433


Q ss_pred             CCccCCCCCCcccccCcccccceeEEcccCCcccchhhhhhcCCC-CCCceEEEEeCCCCC
Q 039475          186 GGKYSSEACNLEGLRNLNHLRQFLRICGLGNLQMRLKINAHLEKK-KNLVHLTLDFDKGED  245 (286)
Q Consensus       186 ~~~~~~~~~~~~~l~~L~~L~~~L~i~~l~~~~~~~~~~~~l~~l-~~L~~L~L~~~~~~~  245 (286)
                             ......+.. ++|+ .|.+.+...+..  ..+..+..+ ++|+.|+++.|..+.
T Consensus       170 -------~i~~~~~~~-~~L~-~L~L~~n~~l~~--i~~~~~~~l~~~L~~L~l~~N~l~~  219 (239)
T 2xwt_C          170 -------SVQGYAFNG-TKLD-AVYLNKNKYLTV--IDKDAFGGVYSGPSLLDVSQTSVTA  219 (239)
T ss_dssp             -------EECTTTTTT-CEEE-EEECTTCTTCCE--ECTTTTTTCSBCCSEEECTTCCCCC
T ss_pred             -------ccCHhhcCC-CCCC-EEEcCCCCCccc--CCHHHhhccccCCcEEECCCCcccc
Confidence                   111112222 5566 677765432222  223457778 899999999998863

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=99.54  E-value=2.3e-14  Score=131.84  Aligned_cols=80  Identities=20%  Similarity=0.237  Sum_probs=45.2

Q ss_pred             CCceEEEeecCCCCCC-chhhhcCCCCcEEEeccCCCCCCCcCccchh--hhcCCCCCcEEEeecccCCccCccc-Ccc-
Q 039475           37 EKLRHLTLMLGLPTKF-PVSIFDAKKLRSLSLFYDSKGQSAASPVLQG--LFDQLTCLRALKIEELWYGDQTIEI-PKG-  111 (286)
Q Consensus        37 ~~~r~ls~~~~~~~~~-~~~~~~l~~Lr~L~l~~~~~~~~~~~~~~~~--~~~~l~~Lr~L~L~~~~~~~~i~~l-P~~-  111 (286)
                      .+.+++.+..+.+..+ |..+.++++|++|++.++.....     .+.  .|.+++.|++|++++    +.+..+ |.. 
T Consensus        79 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~-----~~~~~~~~~l~~L~~L~L~~----n~l~~~~~~~~  149 (455)
T 3v47_A           79 SSLIILKLDYNQFLQLETGAFNGLANLEVLTLTQCNLDGA-----VLSGNFFKPLTSLEMLVLRD----NNIKKIQPASF  149 (455)
T ss_dssp             TTCCEEECTTCTTCEECTTTTTTCTTCCEEECTTSCCBTH-----HHHSSTTTTCTTCCEEECCS----SBCCSCCCCGG
T ss_pred             ccCCEEeCCCCccCccChhhccCcccCCEEeCCCCCCCcc-----ccCcccccCcccCCEEECCC----CccCccCcccc
Confidence            3455555555554332 44555566666666665554321     222  256666677777766    666655 444 


Q ss_pred             ccCCCCCcEEeccc
Q 039475          112 LENLIHLRYLKLSA  125 (286)
Q Consensus       112 i~~L~~Lr~L~L~~  125 (286)
                      ++++++|++|++++
T Consensus       150 ~~~l~~L~~L~L~~  163 (455)
T 3v47_A          150 FLNMRRFHVLDLTF  163 (455)
T ss_dssp             GGGCTTCCEEECTT
T ss_pred             cCCCCcccEEeCCC
Confidence            67777777777765

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=99.54  E-value=2.3e-13  Score=120.74  Aligned_cols=135  Identities=19%  Similarity=0.236  Sum_probs=67.4

Q ss_pred             CCceEEEeecCCCCCCchhhhcCCCCcEEEeccCCCCCCCcCccchhhhcCCCCCcEEEeecccCC--------------
Q 039475           37 EKLRHLTLMLGLPTKFPVSIFDAKKLRSLSLFYDSKGQSAASPVLQGLFDQLTCLRALKIEELWYG--------------  102 (286)
Q Consensus        37 ~~~r~ls~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~--------------  102 (286)
                      .+.+.+.+..+.+..++ .+..+++|++|++.++....      ++. +..++.|++|+++++...              
T Consensus        88 ~~L~~L~L~~n~i~~~~-~~~~l~~L~~L~l~~n~i~~------~~~-~~~l~~L~~L~l~~n~~~~~~~~~~~l~~L~~  159 (347)
T 4fmz_A           88 VKLTNLYIGTNKITDIS-ALQNLTNLRELYLNEDNISD------ISP-LANLTKMYSLNLGANHNLSDLSPLSNMTGLNY  159 (347)
T ss_dssp             TTCCEEECCSSCCCCCG-GGTTCTTCSEEECTTSCCCC------CGG-GTTCTTCCEEECTTCTTCCCCGGGTTCTTCCE
T ss_pred             CcCCEEEccCCcccCch-HHcCCCcCCEEECcCCcccC------chh-hccCCceeEEECCCCCCcccccchhhCCCCcE
Confidence            45677777776665543 46667777777777765432      222 445555555555550000              


Q ss_pred             -----ccCcccCccccCCCCCcEEeccc--ccccCCC-C---------CCCCCcccccccccccCCCEEEecCCCccccc
Q 039475          103 -----DQTIEIPKGLENLIHLRYLKLSA--VEELSET-C---------YCPSLKRLPQGRGKLINLRHLIFDKDYLAYMA  165 (286)
Q Consensus       103 -----~~i~~lP~~i~~L~~Lr~L~L~~--~~~LP~~-~---------~~~~l~~LP~~i~~L~~L~~L~l~~~~~~~lP  165 (286)
                           +.+..++. ++.+++|++|++++  +..+|.- .         ..+.+..++. +..+++|++|++++|.+..+|
T Consensus       160 L~l~~~~~~~~~~-~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~~~-~~~~~~L~~L~l~~n~l~~~~  237 (347)
T 4fmz_A          160 LTVTESKVKDVTP-IANLTDLYSLSLNYNQIEDISPLASLTSLHYFTAYVNQITDITP-VANMTRLNSLKIGNNKITDLS  237 (347)
T ss_dssp             EECCSSCCCCCGG-GGGCTTCSEEECTTSCCCCCGGGGGCTTCCEEECCSSCCCCCGG-GGGCTTCCEEECCSSCCCCCG
T ss_pred             EEecCCCcCCchh-hccCCCCCEEEccCCcccccccccCCCccceeecccCCCCCCch-hhcCCcCCEEEccCCccCCCc
Confidence                 33333332 44444444444444  2222211 0         1122223332 555566666666666665555


Q ss_pred             ccccccccccccccccc
Q 039475          166 NGFERLTSLRTLSGFTV  182 (286)
Q Consensus       166 ~~i~~L~~L~~L~~~~~  182 (286)
                      . ++.+++|++|++..+
T Consensus       238 ~-~~~l~~L~~L~l~~n  253 (347)
T 4fmz_A          238 P-LANLSQLTWLEIGTN  253 (347)
T ss_dssp             G-GTTCTTCCEEECCSS
T ss_pred             c-hhcCCCCCEEECCCC
Confidence            4 556666666655544

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=99.54  E-value=8.5e-14  Score=131.79  Aligned_cols=107  Identities=21%  Similarity=0.159  Sum_probs=85.7

Q ss_pred             ccCCceEEEeecCCCCCCc-hhhhcCCCCcEEEeccCCCCCCCcCccchhhhcCCCCCcEEEeecccCCccCcccCcccc
Q 039475           35 CQEKLRHLTLMLGLPTKFP-VSIFDAKKLRSLSLFYDSKGQSAASPVLQGLFDQLTCLRALKIEELWYGDQTIEIPKGLE  113 (286)
Q Consensus        35 ~~~~~r~ls~~~~~~~~~~-~~~~~l~~Lr~L~l~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~i~~lP~~i~  113 (286)
                      .+.+++++.+..+.+..++ ..+..+++|++|++++|.....     .|..|.+++.|++|+|++    |.+..+|..  
T Consensus        50 ~~~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~-----~~~~~~~l~~L~~L~Ls~----N~l~~lp~~--  118 (562)
T 3a79_B           50 LPPRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSL-----DFHVFLFNQDLEYLDVSH----NRLQNISCC--  118 (562)
T ss_dssp             SCTTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEE-----CTTTTTTCTTCCEEECTT----SCCCEECSC--
T ss_pred             CCCCcCEEECCCCCccccChhhhccCCCccEEECCCCCCCcC-----CHHHhCCCCCCCEEECCC----CcCCccCcc--
Confidence            4578999999999987665 6889999999999999986542     678899999999999999    999999987  


Q ss_pred             CCCCCcEEecccccccCCCCCCCCCcccc--cccccccCCCEEEecCCCcc
Q 039475          114 NLIHLRYLKLSAVEELSETCYCPSLKRLP--QGRGKLINLRHLIFDKDYLA  162 (286)
Q Consensus       114 ~L~~Lr~L~L~~~~~LP~~~~~~~l~~LP--~~i~~L~~L~~L~l~~~~~~  162 (286)
                      .+.+|++|++++          +.+..+|  ..++++++|++|++++|.+.
T Consensus       119 ~l~~L~~L~Ls~----------N~l~~l~~p~~~~~l~~L~~L~L~~n~l~  159 (562)
T 3a79_B          119 PMASLRHLDLSF----------NDFDVLPVCKEFGNLTKLTFLGLSAAKFR  159 (562)
T ss_dssp             CCTTCSEEECCS----------SCCSBCCCCGGGGGCTTCCEEEEECSBCC
T ss_pred             ccccCCEEECCC----------CCccccCchHhhcccCcccEEecCCCccc
Confidence            899999999997          4455443  45666666666666665544

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=99.54  E-value=7.4e-14  Score=129.27  Aligned_cols=120  Identities=19%  Similarity=0.194  Sum_probs=94.9

Q ss_pred             cCCceEEEeecCCCCCCchhhhcCCCCcEEEeccCCCCCCCcCccchhhhcCCCCCcEEEeecccCCccCcccCccccCC
Q 039475           36 QEKLRHLTLMLGLPTKFPVSIFDAKKLRSLSLFYDSKGQSAASPVLQGLFDQLTCLRALKIEELWYGDQTIEIPKGLENL  115 (286)
Q Consensus        36 ~~~~r~ls~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~i~~lP~~i~~L  115 (286)
                      ...++.+.+..+....++ .+..+++|++|+++++....      ++. +.++++|++|++++    +.+..++. ++++
T Consensus        45 l~~l~~L~l~~~~i~~l~-~~~~l~~L~~L~Ls~n~l~~------~~~-~~~l~~L~~L~l~~----n~l~~~~~-~~~l  111 (466)
T 1o6v_A           45 LDQVTTLQADRLGIKSID-GVEYLNNLTQINFSNNQLTD------ITP-LKNLTKLVDILMNN----NQIADITP-LANL  111 (466)
T ss_dssp             HHTCCEEECCSSCCCCCT-TGGGCTTCCEEECCSSCCCC------CGG-GTTCTTCCEEECCS----SCCCCCGG-GTTC
T ss_pred             hccccEEecCCCCCccCc-chhhhcCCCEEECCCCccCC------chh-hhccccCCEEECCC----CccccChh-hcCC
Confidence            357899999888776665 47789999999999987654      444 78999999999999    88888886 9999


Q ss_pred             CCCcEEecccccccCCCCCCCCCcccccccccccCCCEEEecCCCcccccccccccccccccccc
Q 039475          116 IHLRYLKLSAVEELSETCYCPSLKRLPQGRGKLINLRHLIFDKDYLAYMANGFERLTSLRTLSGF  180 (286)
Q Consensus       116 ~~Lr~L~L~~~~~LP~~~~~~~l~~LP~~i~~L~~L~~L~l~~~~~~~lP~~i~~L~~L~~L~~~  180 (286)
                      ++|++|++++          +.+..+|. ++++++|++|++++|.+..+| .++.+++|++|.+.
T Consensus       112 ~~L~~L~L~~----------n~l~~~~~-~~~l~~L~~L~l~~n~l~~~~-~~~~l~~L~~L~l~  164 (466)
T 1o6v_A          112 TNLTGLTLFN----------NQITDIDP-LKNLTNLNRLELSSNTISDIS-ALSGLTSLQQLSFG  164 (466)
T ss_dssp             TTCCEEECCS----------SCCCCCGG-GTTCTTCSEEEEEEEEECCCG-GGTTCTTCSEEEEE
T ss_pred             CCCCEEECCC----------CCCCCChH-HcCCCCCCEEECCCCccCCCh-hhccCCcccEeecC
Confidence            9999999986          55777765 778888888888887777765 36777777776653

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=99.53  E-value=4.9e-14  Score=121.39  Aligned_cols=161  Identities=16%  Similarity=0.115  Sum_probs=114.2

Q ss_pred             CCceEEEeecCCCCCCch-hhhcCCCCcEEEeccCCCCCCCcCccchhhhcCCCCCcEEEeecccCCccCcccCc-cccC
Q 039475           37 EKLRHLTLMLGLPTKFPV-SIFDAKKLRSLSLFYDSKGQSAASPVLQGLFDQLTCLRALKIEELWYGDQTIEIPK-GLEN  114 (286)
Q Consensus        37 ~~~r~ls~~~~~~~~~~~-~~~~l~~Lr~L~l~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~i~~lP~-~i~~  114 (286)
                      .+.+.+.+..+.+..++. .+..+++|++|++++|.....     .+..|.+++.|++|++++    +.+..++. .+++
T Consensus        52 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~-----~~~~~~~l~~L~~L~l~~----n~l~~~~~~~~~~  122 (276)
T 2z62_A           52 PELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSL-----ALGAFSGLSSLQKLVAVE----TNLASLENFPIGH  122 (276)
T ss_dssp             TTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEE-----CTTTTTTCTTCCEEECTT----SCCCCSTTCCCTT
T ss_pred             cCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCcc-----ChhhhcCCccccEEECCC----CCccccCchhccc
Confidence            567888888777655443 577788888888888875432     456677788888888887    77776655 5777


Q ss_pred             CCCCcEEeccc--ccc--cCCC-CCC----------CCCcccc-cccccccCCC----EEEecCCCcccccccccccccc
Q 039475          115 LIHLRYLKLSA--VEE--LSET-CYC----------PSLKRLP-QGRGKLINLR----HLIFDKDYLAYMANGFERLTSL  174 (286)
Q Consensus       115 L~~Lr~L~L~~--~~~--LP~~-~~~----------~~l~~LP-~~i~~L~~L~----~L~l~~~~~~~lP~~i~~L~~L  174 (286)
                      +++|++|++++  +..  +|.. ..+          +.+..+| ..+..+.+|+    .|++++|.+..+|.+.....+|
T Consensus       123 l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~l~l~L~ls~n~l~~~~~~~~~~~~L  202 (276)
T 2z62_A          123 LKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRL  202 (276)
T ss_dssp             CTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCEEEECCSSCCCEECTTSSCSCCE
T ss_pred             CCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcCCHHHhhhhhhccccceeeecCCCcccccCccccCCCcc
Confidence            78888888877  544  4555 422          3455554 5677777777    8999999999998886667789


Q ss_pred             cccccccccccCCccCCCCCCcccccCcccccceeEEccc
Q 039475          175 RTLSGFTVARVGGKYSSEACNLEGLRNLNHLRQFLRICGL  214 (286)
Q Consensus       175 ~~L~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~~L~i~~l  214 (286)
                      ++|++..+...       ......+..+++|+ .|.+.+.
T Consensus       203 ~~L~L~~n~l~-------~~~~~~~~~l~~L~-~L~l~~N  234 (276)
T 2z62_A          203 KELALDTNQLK-------SVPDGIFDRLTSLQ-KIWLHTN  234 (276)
T ss_dssp             EEEECCSSCCS-------CCCTTTTTTCCSCC-EEECCSS
T ss_pred             cEEECCCCcee-------ecCHhHhccccccc-EEEccCC
Confidence            99998877644       23333456777777 7888754

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=99.53  E-value=1.4e-14  Score=127.22  Aligned_cols=177  Identities=18%  Similarity=0.118  Sum_probs=120.0

Q ss_pred             cCCceEEEeecCCCC-CCchhh--hcCCCCcEEEeccCCCCCCCcCccchhhhcCC-----CCCcEEEeecccCCccCcc
Q 039475           36 QEKLRHLTLMLGLPT-KFPVSI--FDAKKLRSLSLFYDSKGQSAASPVLQGLFDQL-----TCLRALKIEELWYGDQTIE  107 (286)
Q Consensus        36 ~~~~r~ls~~~~~~~-~~~~~~--~~l~~Lr~L~l~~~~~~~~~~~~~~~~~~~~l-----~~Lr~L~L~~~~~~~~i~~  107 (286)
                      ..+++++.+..+.+. .+|..+  ..+++|++|++++|....      .|..+..+     +.|++|++++    |.+..
T Consensus        94 l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~------~~~~~~~l~~~~~~~L~~L~L~~----N~l~~  163 (312)
T 1wwl_A           94 ISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWAT------RDAWLAELQQWLKPGLKVLSIAQ----AHSLN  163 (312)
T ss_dssp             TSCCCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESCBCSS------SSSHHHHHHTTCCTTCCEEEEES----CSCCC
T ss_pred             cCCccEEEccCCcccchhHHHHHHhcCCCccEEEccCCCCcc------hhHHHHHHHHhhcCCCcEEEeeC----CCCcc
Confidence            356777777777764 456554  677888888888876543      34555555     7788888888    77776


Q ss_pred             cC-ccccCCCCCcEEecccccccCCCCCCCCCcc---ccccc--ccccCCCEEEecCCCcccc---ccc-cccccccccc
Q 039475          108 IP-KGLENLIHLRYLKLSAVEELSETCYCPSLKR---LPQGR--GKLINLRHLIFDKDYLAYM---ANG-FERLTSLRTL  177 (286)
Q Consensus       108 lP-~~i~~L~~Lr~L~L~~~~~LP~~~~~~~l~~---LP~~i--~~L~~L~~L~l~~~~~~~l---P~~-i~~L~~L~~L  177 (286)
                      +| ..++++++|++|++++          +.+..   +|..+  +++++|++|++++|.+..+   +.. +..+++|++|
T Consensus       164 ~~~~~~~~l~~L~~L~Ls~----------N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L  233 (312)
T 1wwl_A          164 FSCEQVRVFPALSTLDLSD----------NPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGL  233 (312)
T ss_dssp             CCTTTCCCCSSCCEEECCS----------CTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEE
T ss_pred             chHHHhccCCCCCEEECCC----------CCcCcchHHHHHHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEE
Confidence            66 6778888888888875          33332   45555  8899999999999988844   333 4677899999


Q ss_pred             ccccccccCCccCCCCCCcccccCcccccceeEEcccCCcccchhhhhhcCCCCCCceEEEEeCCCCC
Q 039475          178 SGFTVARVGGKYSSEACNLEGLRNLNHLRQFLRICGLGNLQMRLKINAHLEKKKNLVHLTLDFDKGED  245 (286)
Q Consensus       178 ~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~~L~i~~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~  245 (286)
                      ++..+....      ......+..+++|+ .|.+.+..-    ..++..+.  ++|+.|+++.|+.++
T Consensus       234 ~Ls~N~l~~------~~~~~~~~~l~~L~-~L~Ls~N~l----~~ip~~~~--~~L~~L~Ls~N~l~~  288 (312)
T 1wwl_A          234 DLSHNSLRD------AAGAPSCDWPSQLN-SLNLSFTGL----KQVPKGLP--AKLSVLDLSYNRLDR  288 (312)
T ss_dssp             ECTTSCCCS------SCCCSCCCCCTTCC-EEECTTSCC----SSCCSSCC--SEEEEEECCSSCCCS
T ss_pred             ECCCCcCCc------ccchhhhhhcCCCC-EEECCCCcc----Chhhhhcc--CCceEEECCCCCCCC
Confidence            888776541      12234455667777 777765321    13334444  789999999998873

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=99.53  E-value=1.7e-13  Score=112.34  Aligned_cols=151  Identities=14%  Similarity=0.073  Sum_probs=78.5

Q ss_pred             hcCCCCcEEEeccCCCCCCCcCccchhhhcCCCCCcEEEeecccCCccCcccCccccCCCCCcEEecccccccCCCCCCC
Q 039475           57 FDAKKLRSLSLFYDSKGQSAASPVLQGLFDQLTCLRALKIEELWYGDQTIEIPKGLENLIHLRYLKLSAVEELSETCYCP  136 (286)
Q Consensus        57 ~~l~~Lr~L~l~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~i~~lP~~i~~L~~Lr~L~L~~~~~LP~~~~~~  136 (286)
                      ..+++|+.|.+.++....      +| .+..+++|++|++++    +.+..++ .++.+++|++|++++          +
T Consensus        41 ~~l~~L~~L~l~~n~i~~------l~-~l~~l~~L~~L~l~~----n~~~~~~-~l~~l~~L~~L~l~~----------n   98 (197)
T 4ezg_A           41 AQMNSLTYITLANINVTD------LT-GIEYAHNIKDLTINN----IHATNYN-PISGLSNLERLRIMG----------K   98 (197)
T ss_dssp             HHHHTCCEEEEESSCCSC------CT-TGGGCTTCSEEEEES----CCCSCCG-GGTTCTTCCEEEEEC----------T
T ss_pred             hhcCCccEEeccCCCccC------hH-HHhcCCCCCEEEccC----CCCCcch-hhhcCCCCCEEEeEC----------C
Confidence            445556666666554431      33 345566666666666    5444433 555666666666653          3


Q ss_pred             CCcc-cccccccccCCCEEEecCCCccc-cccccccccccccccccccc-ccCCccCCCCCCcccccCcccccceeEEcc
Q 039475          137 SLKR-LPQGRGKLINLRHLIFDKDYLAY-MANGFERLTSLRTLSGFTVA-RVGGKYSSEACNLEGLRNLNHLRQFLRICG  213 (286)
Q Consensus       137 ~l~~-LP~~i~~L~~L~~L~l~~~~~~~-lP~~i~~L~~L~~L~~~~~~-~~~~~~~~~~~~~~~l~~L~~L~~~L~i~~  213 (286)
                      .+.. .|..++++++|++|++++|.+.. .|..++++++|++|++..+. ..         .+..+..+++|+ .|.+.+
T Consensus        99 ~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~---------~~~~l~~l~~L~-~L~l~~  168 (197)
T 4ezg_A           99 DVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAIT---------DIMPLKTLPELK-SLNIQF  168 (197)
T ss_dssp             TCBGGGSCCCTTCTTCCEEECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCC---------CCGGGGGCSSCC-EEECTT
T ss_pred             ccCcccChhhcCCCCCCEEEecCCccCcHhHHHHhhCCCCCEEEccCCCCcc---------ccHhhcCCCCCC-EEECCC
Confidence            3432 45555566666666666665553 34456666666666555543 11         122344444454 455543


Q ss_pred             cCCcccchhhhhhcCCCCCCceEEEEeCCCC
Q 039475          214 LGNLQMRLKINAHLEKKKNLVHLTLDFDKGE  244 (286)
Q Consensus       214 l~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~  244 (286)
                      ..- ..   + ..+..+++|+.|+++.|..+
T Consensus       169 n~i-~~---~-~~l~~l~~L~~L~l~~N~i~  194 (197)
T 4ezg_A          169 DGV-HD---Y-RGIEDFPKLNQLYAFSQTIG  194 (197)
T ss_dssp             BCC-CC---C-TTGGGCSSCCEEEECBC---
T ss_pred             CCC-cC---h-HHhccCCCCCEEEeeCcccC
Confidence            211 11   1 14566777888888887765

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=99.53  E-value=9.7e-14  Score=116.62  Aligned_cols=121  Identities=26%  Similarity=0.352  Sum_probs=70.3

Q ss_pred             EEeecCCCCCCchhhhcCCCCcEEEeccCCCCCCCcCccchhhhcCCCCCcEEEeecccCCccCcccCcc-ccCCCCCcE
Q 039475           42 LTLMLGLPTKFPVSIFDAKKLRSLSLFYDSKGQSAASPVLQGLFDQLTCLRALKIEELWYGDQTIEIPKG-LENLIHLRY  120 (286)
Q Consensus        42 ls~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~i~~lP~~-i~~L~~Lr~  120 (286)
                      +....+....+|..+  .++|+.|++++|.....     .+..|.+++.|++|+|++    +.+..+|.. ++.+.+|++
T Consensus        24 v~c~~~~l~~ip~~~--~~~L~~L~Ls~n~i~~~-----~~~~~~~l~~L~~L~L~~----N~l~~i~~~~~~~l~~L~~   92 (229)
T 3e6j_A           24 VDCRSKRHASVPAGI--PTNAQILYLHDNQITKL-----EPGVFDSLINLKELYLGS----NQLGALPVGVFDSLTQLTV   92 (229)
T ss_dssp             EECTTSCCSSCCSCC--CTTCSEEECCSSCCCCC-----CTTTTTTCTTCCEEECCS----SCCCCCCTTTTTTCTTCCE
T ss_pred             eEccCCCcCccCCCC--CCCCCEEEcCCCccCcc-----CHHHhhCccCCcEEECCC----CCCCCcChhhcccCCCcCE
Confidence            444444444455443  25666666666654432     455566666666666666    666666543 466666666


Q ss_pred             EecccccccCCCCCCCCCcccccc-cccccCCCEEEecCCCccccccccccccccccccccccc
Q 039475          121 LKLSAVEELSETCYCPSLKRLPQG-RGKLINLRHLIFDKDYLAYMANGFERLTSLRTLSGFTVA  183 (286)
Q Consensus       121 L~L~~~~~LP~~~~~~~l~~LP~~-i~~L~~L~~L~l~~~~~~~lP~~i~~L~~L~~L~~~~~~  183 (286)
                      |+|++          +.++.+|.. +..+++|++|++++|.+..+|.+++.+++|++|++..+.
T Consensus        93 L~Ls~----------N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~L~~N~  146 (229)
T 3e6j_A           93 LDLGT----------NQLTVLPSAVFDRLVHLKELFMCCNKLTELPRGIERLTHLTHLALDQNQ  146 (229)
T ss_dssp             EECCS----------SCCCCCCTTTTTTCTTCCEEECCSSCCCSCCTTGGGCTTCSEEECCSSC
T ss_pred             EECCC----------CcCCccChhHhCcchhhCeEeccCCcccccCcccccCCCCCEEECCCCc
Confidence            66664          455555543 356666666666666666666666666666666655543

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=99.52  E-value=9e-14  Score=116.83  Aligned_cols=132  Identities=30%  Similarity=0.402  Sum_probs=115.2

Q ss_pred             ccCCceEEEeecCCCCCC-chhhhcCCCCcEEEeccCCCCCCCcCccchhhhcCCCCCcEEEeecccCCccCcccCcc-c
Q 039475           35 CQEKLRHLTLMLGLPTKF-PVSIFDAKKLRSLSLFYDSKGQSAASPVLQGLFDQLTCLRALKIEELWYGDQTIEIPKG-L  112 (286)
Q Consensus        35 ~~~~~r~ls~~~~~~~~~-~~~~~~l~~Lr~L~l~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~i~~lP~~-i  112 (286)
                      ++.+++.|.+..+.+..+ +..+..+++|+.|++.+|.....     .+..|..++.|++|+|++    |.+..+|.. +
T Consensus        38 ~~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i-----~~~~~~~l~~L~~L~Ls~----N~l~~l~~~~~  108 (229)
T 3e6j_A           38 IPTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGAL-----PVGVFDSLTQLTVLDLGT----NQLTVLPSAVF  108 (229)
T ss_dssp             CCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCC-----CTTTTTTCTTCCEEECCS----SCCCCCCTTTT
T ss_pred             CCCCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCc-----ChhhcccCCCcCEEECCC----CcCCccChhHh
Confidence            567899999999988665 66788999999999999987432     556789999999999999    999988875 6


Q ss_pred             cCCCCCcEEecccccccCCCCCCCCCcccccccccccCCCEEEecCCCccccccc-cccccccccccccccccc
Q 039475          113 ENLIHLRYLKLSAVEELSETCYCPSLKRLPQGRGKLINLRHLIFDKDYLAYMANG-FERLTSLRTLSGFTVARV  185 (286)
Q Consensus       113 ~~L~~Lr~L~L~~~~~LP~~~~~~~l~~LP~~i~~L~~L~~L~l~~~~~~~lP~~-i~~L~~L~~L~~~~~~~~  185 (286)
                      +.+.+|++|++++          +.++.+|..++++++|++|++++|.+..+|.+ +..+++|++|++..+...
T Consensus       109 ~~l~~L~~L~Ls~----------N~l~~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~  172 (229)
T 3e6j_A          109 DRLVHLKELFMCC----------NKLTELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPWD  172 (229)
T ss_dssp             TTCTTCCEEECCS----------SCCCSCCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCBC
T ss_pred             CcchhhCeEeccC----------CcccccCcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCCcc
Confidence            8999999999996          78999999999999999999999999999865 899999999988776543

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=99.52  E-value=1.7e-13  Score=117.97  Aligned_cols=151  Identities=26%  Similarity=0.383  Sum_probs=124.2

Q ss_pred             cCCceEEEeecCCCCCCchhhhcCCCCcEEEeccCCCCCCCcCccchhhhcCCCCCcEEEeecccCCccCcccCcc-ccC
Q 039475           36 QEKLRHLTLMLGLPTKFPVSIFDAKKLRSLSLFYDSKGQSAASPVLQGLFDQLTCLRALKIEELWYGDQTIEIPKG-LEN  114 (286)
Q Consensus        36 ~~~~r~ls~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~i~~lP~~-i~~  114 (286)
                      ..+++++.+..+.+..+ +.+..+++|++|++.++.....     .+..|.+++.|++|++++    |.+..+|.. +++
T Consensus        62 l~~L~~L~l~~n~l~~~-~~l~~l~~L~~L~L~~n~l~~~-----~~~~~~~l~~L~~L~L~~----n~l~~~~~~~~~~  131 (272)
T 3rfs_A           62 LPNVRYLALGGNKLHDI-SALKELTNLTYLILTGNQLQSL-----PNGVFDKLTNLKELVLVE----NQLQSLPDGVFDK  131 (272)
T ss_dssp             CTTCCEEECTTSCCCCC-GGGTTCTTCCEEECTTSCCCCC-----CTTTTTTCTTCCEEECTT----SCCCCCCTTTTTT
T ss_pred             CCCCcEEECCCCCCCCc-hhhcCCCCCCEEECCCCccCcc-----ChhHhcCCcCCCEEECCC----CcCCccCHHHhcc
Confidence            57799999999888665 4788999999999999986542     566789999999999999    999888765 799


Q ss_pred             CCCCcEEecccccccCCCCCCCCCcccccc-cccccCCCEEEecCCCccccccc-ccccccccccccccccccCCccCCC
Q 039475          115 LIHLRYLKLSAVEELSETCYCPSLKRLPQG-RGKLINLRHLIFDKDYLAYMANG-FERLTSLRTLSGFTVARVGGKYSSE  192 (286)
Q Consensus       115 L~~Lr~L~L~~~~~LP~~~~~~~l~~LP~~-i~~L~~L~~L~l~~~~~~~lP~~-i~~L~~L~~L~~~~~~~~~~~~~~~  192 (286)
                      +.+|++|++++          +.+..+|.. ++++++|++|++++|.+..+|.. ++.+++|++|++..+...       
T Consensus       132 l~~L~~L~L~~----------n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~-------  194 (272)
T 3rfs_A          132 LTNLTYLNLAH----------NQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLK-------  194 (272)
T ss_dssp             CTTCCEEECCS----------SCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCS-------
T ss_pred             CCCCCEEECCC----------CccCccCHHHhccCccCCEEECCCCCcCccCHHHhcCCccCCEEECCCCcCC-------
Confidence            99999999996          568888765 58999999999999999988776 789999999998877654       


Q ss_pred             CCCcccccCcccccceeEEccc
Q 039475          193 ACNLEGLRNLNHLRQFLRICGL  214 (286)
Q Consensus       193 ~~~~~~l~~L~~L~~~L~i~~l  214 (286)
                      +.....++.+++|+ .|.+.+.
T Consensus       195 ~~~~~~~~~l~~L~-~L~l~~N  215 (272)
T 3rfs_A          195 SVPDGVFDRLTSLQ-YIWLHDN  215 (272)
T ss_dssp             CCCTTTTTTCTTCC-EEECCSS
T ss_pred             ccCHHHHhCCcCCC-EEEccCC
Confidence            33334467777777 7887754

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=99.52  E-value=3e-14  Score=135.70  Aligned_cols=132  Identities=19%  Similarity=0.208  Sum_probs=105.1

Q ss_pred             cccCCceEEEeecCCCCCCc-hhhhcCCCCcEEEeccCCCCCCCcCccchhhhcCCCCCcEEEeecccCCccCcccCc-c
Q 039475           34 SCQEKLRHLTLMLGLPTKFP-VSIFDAKKLRSLSLFYDSKGQSAASPVLQGLFDQLTCLRALKIEELWYGDQTIEIPK-G  111 (286)
Q Consensus        34 ~~~~~~r~ls~~~~~~~~~~-~~~~~l~~Lr~L~l~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~i~~lP~-~  111 (286)
                      .+|..+++|.+..+.+..++ ..|.++++|++|++++|.....     .+.+|.++++|++|+|++    |.+..+|. .
T Consensus        49 ~lp~~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i-----~~~~f~~L~~L~~L~Ls~----N~l~~l~~~~  119 (635)
T 4g8a_A           49 NLPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTI-----EDGAYQSLSHLSTLILTG----NPIQSLALGA  119 (635)
T ss_dssp             SSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEE-----CTTTTTTCTTCCEEECTT----CCCCEECGGG
T ss_pred             CCCcCCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCCCc-----ChhHhcCCCCCCEEEccC----CcCCCCCHHH
Confidence            35677899999988887665 4688899999999999876432     566789999999999999    99988886 5


Q ss_pred             ccCCCCCcEEecccccccCCCCCCCCCccccc-ccccccCCCEEEecCCCccc--ccccccccccccccccccccc
Q 039475          112 LENLIHLRYLKLSAVEELSETCYCPSLKRLPQ-GRGKLINLRHLIFDKDYLAY--MANGFERLTSLRTLSGFTVAR  184 (286)
Q Consensus       112 i~~L~~Lr~L~L~~~~~LP~~~~~~~l~~LP~-~i~~L~~L~~L~l~~~~~~~--lP~~i~~L~~L~~L~~~~~~~  184 (286)
                      |++|.+|++|++++          +.++.+|. .|+++++|++|++++|.+..  +|..++.+++|++|++..+..
T Consensus       120 f~~L~~L~~L~Ls~----------N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l  185 (635)
T 4g8a_A          120 FSGLSSLQKLVAVE----------TNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKI  185 (635)
T ss_dssp             GTTCTTCCEEECTT----------SCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCC
T ss_pred             hcCCCCCCEEECCC----------CcCCCCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCccc
Confidence            79999999999986          56777775 47888888888888887764  456688888888887766543

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=99.51  E-value=2e-13  Score=126.26  Aligned_cols=118  Identities=19%  Similarity=0.151  Sum_probs=90.9

Q ss_pred             cCCceEEEeecCCCCCCchhhhcCCCCcEEEeccCCCCCCCcCccchhhhcCCCCCcEEEeecccCCccCcccCccccCC
Q 039475           36 QEKLRHLTLMLGLPTKFPVSIFDAKKLRSLSLFYDSKGQSAASPVLQGLFDQLTCLRALKIEELWYGDQTIEIPKGLENL  115 (286)
Q Consensus        36 ~~~~r~ls~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~i~~lP~~i~~L  115 (286)
                      ..+++++.+..+.+..+| .+..+++|++|+++++....      ++  +..+++|++|++++    +.+..+|  ++++
T Consensus        41 l~~L~~L~Ls~n~l~~~~-~l~~l~~L~~L~Ls~n~l~~------~~--~~~l~~L~~L~Ls~----N~l~~~~--~~~l  105 (457)
T 3bz5_A           41 LATLTSLDCHNSSITDMT-GIEKLTGLTKLICTSNNITT------LD--LSQNTNLTYLACDS----NKLTNLD--VTPL  105 (457)
T ss_dssp             HTTCCEEECCSSCCCCCT-TGGGCTTCSEEECCSSCCSC------CC--CTTCTTCSEEECCS----SCCSCCC--CTTC
T ss_pred             cCCCCEEEccCCCcccCh-hhcccCCCCEEEccCCcCCe------Ec--cccCCCCCEEECcC----CCCceee--cCCC
Confidence            467899999988887665 68889999999999987654      43  68899999999999    8888876  8999


Q ss_pred             CCCcEEecccccccCCCCCCCCCcccccccccccCCCEEEecCCCcccccccccccccccccccccc
Q 039475          116 IHLRYLKLSAVEELSETCYCPSLKRLPQGRGKLINLRHLIFDKDYLAYMANGFERLTSLRTLSGFTV  182 (286)
Q Consensus       116 ~~Lr~L~L~~~~~LP~~~~~~~l~~LP~~i~~L~~L~~L~l~~~~~~~lP~~i~~L~~L~~L~~~~~  182 (286)
                      ++|++|++++          +.+..+|  ++++++|++|++++|.+..+|  ++++++|++|++..+
T Consensus       106 ~~L~~L~L~~----------N~l~~l~--~~~l~~L~~L~l~~N~l~~l~--l~~l~~L~~L~l~~n  158 (457)
T 3bz5_A          106 TKLTYLNCDT----------NKLTKLD--VSQNPLLTYLNCARNTLTEID--VSHNTQLTELDCHLN  158 (457)
T ss_dssp             TTCCEEECCS----------SCCSCCC--CTTCTTCCEEECTTSCCSCCC--CTTCTTCCEEECTTC
T ss_pred             CcCCEEECCC----------CcCCeec--CCCCCcCCEEECCCCccceec--cccCCcCCEEECCCC
Confidence            9999999986          4566665  667777777777777666653  666666666665554

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=99.51  E-value=3.4e-13  Score=124.78  Aligned_cols=131  Identities=21%  Similarity=0.279  Sum_probs=86.7

Q ss_pred             cCCceEEEeecCCCCCCchhhhcCCCCcEEEeccCCCCCCCcCccchhhhcCCCCCcEEEeecccCCccCcccCccccCC
Q 039475           36 QEKLRHLTLMLGLPTKFPVSIFDAKKLRSLSLFYDSKGQSAASPVLQGLFDQLTCLRALKIEELWYGDQTIEIPKGLENL  115 (286)
Q Consensus        36 ~~~~r~ls~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~i~~lP~~i~~L  115 (286)
                      ..+++++.+..+....+++ +..+++|++|.+.++....      ++. +.++++|++|++++    +.+..+|. ++++
T Consensus        67 l~~L~~L~Ls~n~l~~~~~-~~~l~~L~~L~l~~n~l~~------~~~-~~~l~~L~~L~L~~----n~l~~~~~-~~~l  133 (466)
T 1o6v_A           67 LNNLTQINFSNNQLTDITP-LKNLTKLVDILMNNNQIAD------ITP-LANLTNLTGLTLFN----NQITDIDP-LKNL  133 (466)
T ss_dssp             CTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCC------CGG-GTTCTTCCEEECCS----SCCCCCGG-GTTC
T ss_pred             hcCCCEEECCCCccCCchh-hhccccCCEEECCCCcccc------Chh-hcCCCCCCEEECCC----CCCCCChH-HcCC
Confidence            5678999999988877776 8889999999999887654      344 78899999999999    88888775 8888


Q ss_pred             CCCcEEeccc--ccccCCCCCCCCCc---------ccccccccccCCCEEEecCCCccccccccccccccccccccc
Q 039475          116 IHLRYLKLSA--VEELSETCYCPSLK---------RLPQGRGKLINLRHLIFDKDYLAYMANGFERLTSLRTLSGFT  181 (286)
Q Consensus       116 ~~Lr~L~L~~--~~~LP~~~~~~~l~---------~LP~~i~~L~~L~~L~l~~~~~~~lP~~i~~L~~L~~L~~~~  181 (286)
                      ++|++|++++  +..+|.-..+..++         .++ .++++++|++|++++|.+..++ .++++++|++|++..
T Consensus       134 ~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~~~~~~~-~~~~l~~L~~L~l~~n~l~~~~-~l~~l~~L~~L~l~~  208 (466)
T 1o6v_A          134 TNLNRLELSSNTISDISALSGLTSLQQLSFGNQVTDLK-PLANLTTLERLDISSNKVSDIS-VLAKLTNLESLIATN  208 (466)
T ss_dssp             TTCSEEEEEEEEECCCGGGTTCTTCSEEEEEESCCCCG-GGTTCTTCCEEECCSSCCCCCG-GGGGCTTCSEEECCS
T ss_pred             CCCCEEECCCCccCCChhhccCCcccEeecCCcccCch-hhccCCCCCEEECcCCcCCCCh-hhccCCCCCEEEecC
Confidence            8899998887  55554322222221         112 2445555555555555444442 244444454444443

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=99.51  E-value=1e-13  Score=115.75  Aligned_cols=104  Identities=21%  Similarity=0.353  Sum_probs=47.5

Q ss_pred             CCCcEEEeccCCCCCCCcCccchhhhcCCCCCcEEEeecccCCccCccc-CccccCCCCCcEEecccccccCCCCCCCCC
Q 039475           60 KKLRSLSLFYDSKGQSAASPVLQGLFDQLTCLRALKIEELWYGDQTIEI-PKGLENLIHLRYLKLSAVEELSETCYCPSL  138 (286)
Q Consensus        60 ~~Lr~L~l~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~i~~l-P~~i~~L~~Lr~L~L~~~~~LP~~~~~~~l  138 (286)
                      ++|+.|++.++.....     .+..|..++.|++|+|++    +.+..+ |..++++.+|++|+|++          +.+
T Consensus        32 ~~l~~L~l~~n~i~~i-----~~~~~~~l~~L~~L~Ls~----N~i~~~~~~~~~~l~~L~~L~Ls~----------N~l   92 (220)
T 2v9t_B           32 ETITEIRLEQNTIKVI-----PPGAFSPYKKLRRIDLSN----NQISELAPDAFQGLRSLNSLVLYG----------NKI   92 (220)
T ss_dssp             TTCCEEECCSSCCCEE-----CTTSSTTCTTCCEEECCS----SCCCEECTTTTTTCSSCCEEECCS----------SCC
T ss_pred             cCCCEEECCCCcCCCc-----CHhHhhCCCCCCEEECCC----CcCCCcCHHHhhCCcCCCEEECCC----------CcC
Confidence            3455555555443221     223444455555555555    444433 34445555555555543          344


Q ss_pred             cccccc-cccccCCCEEEecCCCcccccc-cccccccccccccccc
Q 039475          139 KRLPQG-RGKLINLRHLIFDKDYLAYMAN-GFERLTSLRTLSGFTV  182 (286)
Q Consensus       139 ~~LP~~-i~~L~~L~~L~l~~~~~~~lP~-~i~~L~~L~~L~~~~~  182 (286)
                      +.+|.. +..+++|++|++++|.+..+++ .|+.+++|++|++..+
T Consensus        93 ~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N  138 (220)
T 2v9t_B           93 TELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDN  138 (220)
T ss_dssp             CCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred             CccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCC
Confidence            444433 2444455555555544444422 2444444544444443

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=99.51  E-value=7e-14  Score=123.69  Aligned_cols=134  Identities=19%  Similarity=0.174  Sum_probs=101.3

Q ss_pred             CceEEEeecCCCCCCchhhhcCCCCcEEEeccCCCCCCCcCccchhhhcCCCCCcEEEeecccCCccCccc-CccccCCC
Q 039475           38 KLRHLTLMLGLPTKFPVSIFDAKKLRSLSLFYDSKGQSAASPVLQGLFDQLTCLRALKIEELWYGDQTIEI-PKGLENLI  116 (286)
Q Consensus        38 ~~r~ls~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~i~~l-P~~i~~L~  116 (286)
                      ..+.+.+..+....+|..+  .++|++|++.++.....     .+..|.++++|++|++++    +.+..+ |..+++++
T Consensus        34 ~l~~l~~~~~~l~~ip~~~--~~~l~~L~l~~n~i~~~-----~~~~~~~l~~L~~L~L~~----n~l~~~~~~~~~~l~  102 (332)
T 2ft3_A           34 HLRVVQCSDLGLKAVPKEI--SPDTTLLDLQNNDISEL-----RKDDFKGLQHLYALVLVN----NKISKIHEKAFSPLR  102 (332)
T ss_dssp             ETTEEECCSSCCSSCCSCC--CTTCCEEECCSSCCCEE-----CTTTTTTCTTCCEEECCS----SCCCEECGGGSTTCT
T ss_pred             cCCEEECCCCCccccCCCC--CCCCeEEECCCCcCCcc-----CHhHhhCCCCCcEEECCC----CccCccCHhHhhCcC
Confidence            5788888888777788766  47999999999986532     566889999999999999    998877 77899999


Q ss_pred             CCcEEeccc--ccccCCC-C--------CCCCCccccc-ccccccCCCEEEecCCCccc---cccccccccccccccccc
Q 039475          117 HLRYLKLSA--VEELSET-C--------YCPSLKRLPQ-GRGKLINLRHLIFDKDYLAY---MANGFERLTSLRTLSGFT  181 (286)
Q Consensus       117 ~Lr~L~L~~--~~~LP~~-~--------~~~~l~~LP~-~i~~L~~L~~L~l~~~~~~~---lP~~i~~L~~L~~L~~~~  181 (286)
                      +|++|++++  +..+|.. +        ..+.+..+|. .++++++|++|++++|.+..   .|..++.+ +|++|++..
T Consensus       103 ~L~~L~L~~n~l~~l~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~~  181 (332)
T 2ft3_A          103 KLQKLYISKNHLVEIPPNLPSSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISE  181 (332)
T ss_dssp             TCCEEECCSSCCCSCCSSCCTTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCCS
T ss_pred             CCCEEECCCCcCCccCccccccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCC-ccCEEECcC
Confidence            999999998  6677765 4        3334556664 36778888888887777652   34446666 777776655


Q ss_pred             cc
Q 039475          182 VA  183 (286)
Q Consensus       182 ~~  183 (286)
                      +.
T Consensus       182 n~  183 (332)
T 2ft3_A          182 AK  183 (332)
T ss_dssp             SB
T ss_pred             CC
Confidence            43

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=99.51  E-value=1.1e-13  Score=120.45  Aligned_cols=150  Identities=20%  Similarity=0.205  Sum_probs=122.9

Q ss_pred             hhcCCCCcEEEeccCCCCCCCcCccchhhhcCCCCCcEEEeecccCCccCcccCccccCCCCCcEEecccccccCCCCCC
Q 039475           56 IFDAKKLRSLSLFYDSKGQSAASPVLQGLFDQLTCLRALKIEELWYGDQTIEIPKGLENLIHLRYLKLSAVEELSETCYC  135 (286)
Q Consensus        56 ~~~l~~Lr~L~l~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~i~~lP~~i~~L~~Lr~L~L~~~~~LP~~~~~  135 (286)
                      ...+++|+.|.+.++....      ++. +..+++|++|++++    +.+..++. ++++++|++|++++          
T Consensus        42 ~~~l~~L~~L~l~~~~i~~------~~~-~~~l~~L~~L~L~~----n~l~~~~~-l~~l~~L~~L~l~~----------   99 (291)
T 1h6t_A           42 QNELNSIDQIIANNSDIKS------VQG-IQYLPNVTKLFLNG----NKLTDIKP-LANLKNLGWLFLDE----------   99 (291)
T ss_dssp             HHHHHTCCEEECTTSCCCC------CTT-GGGCTTCCEEECCS----SCCCCCGG-GTTCTTCCEEECCS----------
T ss_pred             hhhcCcccEEEccCCCccc------Chh-HhcCCCCCEEEccC----CccCCCcc-cccCCCCCEEECCC----------
Confidence            4578999999999987643      443 78899999999999    99998887 99999999999996          


Q ss_pred             CCCcccccccccccCCCEEEecCCCcccccccccccccccccccccccccCCccCCCCCCcccccCcccccceeEEcccC
Q 039475          136 PSLKRLPQGRGKLINLRHLIFDKDYLAYMANGFERLTSLRTLSGFTVARVGGKYSSEACNLEGLRNLNHLRQFLRICGLG  215 (286)
Q Consensus       136 ~~l~~LP~~i~~L~~L~~L~l~~~~~~~lP~~i~~L~~L~~L~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~~L~i~~l~  215 (286)
                      +.+..+|. ++++++|++|++++|.+..+ ..++.+++|++|++..+...         .+..+..+++|+ .|.+.+..
T Consensus       100 n~l~~~~~-l~~l~~L~~L~L~~n~i~~~-~~l~~l~~L~~L~l~~n~l~---------~~~~l~~l~~L~-~L~L~~N~  167 (291)
T 1h6t_A          100 NKVKDLSS-LKDLKKLKSLSLEHNGISDI-NGLVHLPQLESLYLGNNKIT---------DITVLSRLTKLD-TLSLEDNQ  167 (291)
T ss_dssp             SCCCCGGG-GTTCTTCCEEECTTSCCCCC-GGGGGCTTCCEEECCSSCCC---------CCGGGGGCTTCS-EEECCSSC
T ss_pred             CcCCCChh-hccCCCCCEEECCCCcCCCC-hhhcCCCCCCEEEccCCcCC---------cchhhccCCCCC-EEEccCCc
Confidence            66888775 99999999999999999987 47999999999999877644         235677777777 78887542


Q ss_pred             CcccchhhhhhcCCCCCCceEEEEeCCCC
Q 039475          216 NLQMRLKINAHLEKKKNLVHLTLDFDKGE  244 (286)
Q Consensus       216 ~~~~~~~~~~~l~~l~~L~~L~L~~~~~~  244 (286)
                      - ..   .+. +..+++|+.|+++.|..+
T Consensus       168 l-~~---~~~-l~~l~~L~~L~L~~N~i~  191 (291)
T 1h6t_A          168 I-SD---IVP-LAGLTKLQNLYLSKNHIS  191 (291)
T ss_dssp             C-CC---CGG-GTTCTTCCEEECCSSCCC
T ss_pred             c-cc---chh-hcCCCccCEEECCCCcCC
Confidence            1 11   122 889999999999999887

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=99.50  E-value=5.8e-14  Score=139.19  Aligned_cols=181  Identities=18%  Similarity=0.166  Sum_probs=132.9

Q ss_pred             ccCCceEEEeecCCCCCC-chhhhcCCCCcEEEeccCCCCCCCcCccchhhhcCCCCCcEEEeecccCCccCccc-Cccc
Q 039475           35 CQEKLRHLTLMLGLPTKF-PVSIFDAKKLRSLSLFYDSKGQSAASPVLQGLFDQLTCLRALKIEELWYGDQTIEI-PKGL  112 (286)
Q Consensus        35 ~~~~~r~ls~~~~~~~~~-~~~~~~l~~Lr~L~l~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~i~~l-P~~i  112 (286)
                      .+.++++|.+..+.+..+ +..+..+++|++|+++++.....    +.|..|.++++|++|+|++    |.+..+ |..|
T Consensus        22 lp~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~----i~~~~f~~L~~L~~L~Ls~----N~l~~~~p~~~   93 (844)
T 3j0a_A           22 VLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLT----IDKEAFRNLPNLRILDLGS----SKIYFLHPDAF   93 (844)
T ss_dssp             SCTTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCE----ECTTTTSSCTTCCEEECTT----CCCCEECTTSS
T ss_pred             CCCCcCEEECCCCcCCccChhHCcccccCeEEeCCCCCCccc----cCHHHhcCCCCCCEEECCC----CcCcccCHhHc
Confidence            678899999999888544 67889999999999999864332    1478899999999999999    998866 8899


Q ss_pred             cCCCCCcEEecccccccCCCCCCCCCcc-cccc--cccccCCCEEEecCCCccccc--ccccccccccccccccccccCC
Q 039475          113 ENLIHLRYLKLSAVEELSETCYCPSLKR-LPQG--RGKLINLRHLIFDKDYLAYMA--NGFERLTSLRTLSGFTVARVGG  187 (286)
Q Consensus       113 ~~L~~Lr~L~L~~~~~LP~~~~~~~l~~-LP~~--i~~L~~L~~L~l~~~~~~~lP--~~i~~L~~L~~L~~~~~~~~~~  187 (286)
                      +++.+|++|+|++          +.+.. +|..  ++++++|++|++++|.+..++  ..|+++++|++|++..+...  
T Consensus        94 ~~l~~L~~L~Ls~----------n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~--  161 (844)
T 3j0a_A           94 QGLFHLFELRLYF----------CGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIF--  161 (844)
T ss_dssp             CSCSSCCCEECTT----------CCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCC--
T ss_pred             cCCcccCEeeCcC----------CCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCC--
Confidence            9999999999996          44554 5654  889999999999999888653  46999999999988776543  


Q ss_pred             ccCCCCCCcccccCc--ccccceeEEcccCCcccchhhhhhcCCCC------CCceEEEEeCCCC
Q 039475          188 KYSSEACNLEGLRNL--NHLRQFLRICGLGNLQMRLKINAHLEKKK------NLVHLTLDFDKGE  244 (286)
Q Consensus       188 ~~~~~~~~~~~l~~L--~~L~~~L~i~~l~~~~~~~~~~~~l~~l~------~L~~L~L~~~~~~  244 (286)
                           ......+..+  ++|+ .|.+....-   ....+..+..+.      .|+.|+++.|...
T Consensus       162 -----~~~~~~l~~l~~~~L~-~L~L~~n~l---~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~  217 (844)
T 3j0a_A          162 -----LVCEHELEPLQGKTLS-FFSLAANSL---YSRVSVDWGKCMNPFRNMVLEILDVSGNGWT  217 (844)
T ss_dssp             -----CCCSGGGHHHHHCSSC-CCEECCSBS---CCCCCCCCCSSSCTTTTCCBSEEBCSSCCSS
T ss_pred             -----eeCHHHcccccCCccc-eEECCCCcc---ccccccchhhcCCccccCceeEEecCCCcCc
Confidence                 2333444444  4555 566654321   111122222222      4888888888654

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=99.50  E-value=1.6e-14  Score=137.64  Aligned_cols=190  Identities=18%  Similarity=0.127  Sum_probs=123.0

Q ss_pred             cCCceEEEeecCCCCCCchhhhcCCCCcEEEeccCCCCCCCcCccchhhhcCCCCCcEEEeecccCCccCcccCccccCC
Q 039475           36 QEKLRHLTLMLGLPTKFPVSIFDAKKLRSLSLFYDSKGQSAASPVLQGLFDQLTCLRALKIEELWYGDQTIEIPKGLENL  115 (286)
Q Consensus        36 ~~~~r~ls~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~i~~lP~~i~~L  115 (286)
                      ....+.+.+..+.... +..+..+++|++|+++++.......   .+..+..++.|++|++++    +.+..+|..++.+
T Consensus       327 l~~L~~L~l~~n~~~~-~~~~~~l~~L~~L~ls~n~l~~~~~---~~~~~~~~~~L~~L~L~~----n~l~~~~~~~~~l  398 (606)
T 3vq2_A          327 LPFLKSLTLTMNKGSI-SFKKVALPSLSYLDLSRNALSFSGC---CSYSDLGTNSLRHLDLSF----NGAIIMSANFMGL  398 (606)
T ss_dssp             CSSCCEEEEESCSSCE-ECCCCCCTTCCEEECCSSCEEEEEE---CCHHHHCCSCCCEEECCS----CSEEEECCCCTTC
T ss_pred             CCccceeeccCCcCcc-chhhccCCCCCEEECcCCccCCCcc---hhhhhccCCcccEeECCC----CccccchhhccCC
Confidence            3567788887774321 2245678888888888876543211   366677888888888888    7777788788888


Q ss_pred             CCCcEEeccc--ccccCC--C-CCCCCC----------c-ccccccccccCCCEEEecCCCccc--cccccccccccccc
Q 039475          116 IHLRYLKLSA--VEELSE--T-CYCPSL----------K-RLPQGRGKLINLRHLIFDKDYLAY--MANGFERLTSLRTL  177 (286)
Q Consensus       116 ~~Lr~L~L~~--~~~LP~--~-~~~~~l----------~-~LP~~i~~L~~L~~L~l~~~~~~~--lP~~i~~L~~L~~L  177 (286)
                      .+|++|++++  +..++.  . ..+..+          . ..|..++++++|++|++++|.+..  +|..++.+++|++|
T Consensus       399 ~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L  478 (606)
T 3vq2_A          399 EELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFL  478 (606)
T ss_dssp             TTCCEEECTTSEEESTTTTTTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEE
T ss_pred             CCCCeeECCCCccCCccChhhhhccccCCEEECcCCCCCccchhhhcCCCCCCEEECCCCcCCCcchHHhhccCCCCCEE
Confidence            8888888877  444433  2 222222          2 246667777788888887777764  56667777888887


Q ss_pred             ccccccccCCccCCCCCCcccccCcccccceeEEcccCCcccchhhhhhcCCCCCCceEEEEeCCCC
Q 039475          178 SGFTVARVGGKYSSEACNLEGLRNLNHLRQFLRICGLGNLQMRLKINAHLEKKKNLVHLTLDFDKGE  244 (286)
Q Consensus       178 ~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~~L~i~~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~  244 (286)
                      ++..+...       +.....++.+++|+ .|.+.+..-   ....+..+..+++|+.|+|++|+.+
T Consensus       479 ~Ls~n~l~-------~~~~~~~~~l~~L~-~L~Ls~N~l---~~~~~~~~~~l~~L~~L~l~~N~l~  534 (606)
T 3vq2_A          479 DLSKCQLE-------QISWGVFDTLHRLQ-LLNMSHNNL---LFLDSSHYNQLYSLSTLDCSFNRIE  534 (606)
T ss_dssp             ECTTSCCC-------EECTTTTTTCTTCC-EEECCSSCC---SCEEGGGTTTCTTCCEEECTTSCCC
T ss_pred             ECCCCcCC-------ccChhhhcccccCC-EEECCCCcC---CCcCHHHccCCCcCCEEECCCCcCc
Confidence            77766543       23334456666666 666664311   2334556777777777777777765

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=99.50  E-value=3.3e-15  Score=132.10  Aligned_cols=187  Identities=16%  Similarity=0.121  Sum_probs=85.9

Q ss_pred             CceEEEeecCCCCCCchhhhcCCCCcEEEeccCCCCCCCcCccchhhhcCCCCCcEEEeecccCCccCc-ccCccccCCC
Q 039475           38 KLRHLTLMLGLPTKFPVSIFDAKKLRSLSLFYDSKGQSAASPVLQGLFDQLTCLRALKIEELWYGDQTI-EIPKGLENLI  116 (286)
Q Consensus        38 ~~r~ls~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~i~-~lP~~i~~L~  116 (286)
                      .++.+.+..+.....+..+..+++|++|+++++......    ++..+..+++|++|++++    +.+. ..|..+++++
T Consensus        71 ~l~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~~~l~~~~----~~~~~~~~~~L~~L~L~~----~~l~~~~~~~l~~~~  142 (336)
T 2ast_B           71 GVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVST----LHGILSQCSKLQNLSLEG----LRLSDPIVNTLAKNS  142 (336)
T ss_dssp             TCSEEECTTCEECSCCCSCCCCBCCCEEECTTCEECHHH----HHHHHTTBCCCSEEECTT----CBCCHHHHHHHTTCT
T ss_pred             cceEEEcCCccccccchhhccCCCCCEEEccCCCcCHHH----HHHHHhhCCCCCEEeCcC----cccCHHHHHHHhcCC
Confidence            344444444443333333344555555555554322110    334445555555555555    4443 3444455555


Q ss_pred             CCcEEeccc---cc--ccCCC-C-----------CCCCCcc--ccccccccc-CCCEEEecCCC--c--ccccccccccc
Q 039475          117 HLRYLKLSA---VE--ELSET-C-----------YCPSLKR--LPQGRGKLI-NLRHLIFDKDY--L--AYMANGFERLT  172 (286)
Q Consensus       117 ~Lr~L~L~~---~~--~LP~~-~-----------~~~~l~~--LP~~i~~L~-~L~~L~l~~~~--~--~~lP~~i~~L~  172 (286)
                      +|++|++++   ++  .+|.. .           +|..+..  +|..+.+++ +|++|++++|.  +  ..+|..+++++
T Consensus       143 ~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~  222 (336)
T 2ast_B          143 NLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCP  222 (336)
T ss_dssp             TCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCT
T ss_pred             CCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCCCcccCCHHHHHHHHhhCC
Confidence            555555543   00  00000 0           1323432  455555666 66666666653  2  23444555666


Q ss_pred             cccccccccccccCCccCCCCCCcccccCcccccceeEEcccCCcccchhhhhhcCCCCCCceEEEEeC
Q 039475          173 SLRTLSGFTVARVGGKYSSEACNLEGLRNLNHLRQFLRICGLGNLQMRLKINAHLEKKKNLVHLTLDFD  241 (286)
Q Consensus       173 ~L~~L~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~~L~i~~l~~~~~~~~~~~~l~~l~~L~~L~L~~~  241 (286)
                      +|++|++..+...      ....+..+.++++|+ .|.+.++...  .+.....+.++++|+.|+++.+
T Consensus       223 ~L~~L~l~~~~~l------~~~~~~~l~~l~~L~-~L~l~~~~~~--~~~~~~~l~~~~~L~~L~l~~~  282 (336)
T 2ast_B          223 NLVHLDLSDSVML------KNDCFQEFFQLNYLQ-HLSLSRCYDI--IPETLLELGEIPTLKTLQVFGI  282 (336)
T ss_dssp             TCSEEECTTCTTC------CGGGGGGGGGCTTCC-EEECTTCTTC--CGGGGGGGGGCTTCCEEECTTS
T ss_pred             CCCEEeCCCCCcC------CHHHHHHHhCCCCCC-EeeCCCCCCC--CHHHHHHHhcCCCCCEEeccCc
Confidence            6666665555421      123344455555555 5666544321  1111234555666666666655

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=99.50  E-value=7.6e-14  Score=115.22  Aligned_cols=127  Identities=28%  Similarity=0.392  Sum_probs=65.0

Q ss_pred             CCceEEEeecCCCCCCchh-hhcCCCCcEEEeccCCCCCCCcCccchhhhcCCCCCcEEEeecccCCccCcccCcc-ccC
Q 039475           37 EKLRHLTLMLGLPTKFPVS-IFDAKKLRSLSLFYDSKGQSAASPVLQGLFDQLTCLRALKIEELWYGDQTIEIPKG-LEN  114 (286)
Q Consensus        37 ~~~r~ls~~~~~~~~~~~~-~~~l~~Lr~L~l~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~i~~lP~~-i~~  114 (286)
                      .+++++.+..+.+..++.. +..+++|++|++.++.....     .+..|..++.|++|++++    +.+..+|.. +++
T Consensus        28 ~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~-----~~~~~~~l~~L~~L~Ls~----n~l~~~~~~~~~~   98 (208)
T 2o6s_A           28 AQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSL-----PNGVFNKLTSLTYLNLST----NQLQSLPNGVFDK   98 (208)
T ss_dssp             TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCC-----CTTTTTTCTTCCEEECCS----SCCCCCCTTTTTT
T ss_pred             CCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCcc-----ChhhcCCCCCcCEEECCC----CcCCccCHhHhcC
Confidence            3455555555554433332 34555555555555543321     333445555555555555    555555443 355


Q ss_pred             CCCCcEEecccccccCCCCCCCCCcccccc-cccccCCCEEEecCCCccccccc-ccccccccccccccc
Q 039475          115 LIHLRYLKLSAVEELSETCYCPSLKRLPQG-RGKLINLRHLIFDKDYLAYMANG-FERLTSLRTLSGFTV  182 (286)
Q Consensus       115 L~~Lr~L~L~~~~~LP~~~~~~~l~~LP~~-i~~L~~L~~L~l~~~~~~~lP~~-i~~L~~L~~L~~~~~  182 (286)
                      +.+|++|++++          +.+..+|.. +.++++|++|++++|.+..+|.. ++++++|++|++..+
T Consensus        99 l~~L~~L~L~~----------N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N  158 (208)
T 2o6s_A           99 LTQLKELALNT----------NQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDN  158 (208)
T ss_dssp             CTTCCEEECCS----------SCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSC
T ss_pred             ccCCCEEEcCC----------CcCcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCC
Confidence            55555555553          445555443 35555555555555555555444 455555555555443

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=99.50  E-value=8.3e-14  Score=111.07  Aligned_cols=129  Identities=22%  Similarity=0.204  Sum_probs=101.0

Q ss_pred             ccCCceEEEeecCCCC--CCchhhhcCCCCcEEEeccCCCCCCCcCccchhhhcCCCCCcEEEeecccCCccCcc-cCcc
Q 039475           35 CQEKLRHLTLMLGLPT--KFPVSIFDAKKLRSLSLFYDSKGQSAASPVLQGLFDQLTCLRALKIEELWYGDQTIE-IPKG  111 (286)
Q Consensus        35 ~~~~~r~ls~~~~~~~--~~~~~~~~l~~Lr~L~l~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~i~~-lP~~  111 (286)
                      .+.+++++.+..+.+.  .+|..+..+++|++|++.+|....      + ..|..++.|++|++++    |.+.. +|..
T Consensus        22 ~~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~------~-~~~~~l~~L~~L~Ls~----N~l~~~~~~~   90 (168)
T 2ell_A           22 TPAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLIS------V-SNLPKLPKLKKLELSE----NRIFGGLDML   90 (168)
T ss_dssp             CTTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCC------C-SSCCCCSSCCEEEEES----CCCCSCCCHH
T ss_pred             CcccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCC------h-hhhccCCCCCEEECcC----CcCchHHHHH
Confidence            3567888888888775  677777888888888888887543      3 4567888888888888    88776 7777


Q ss_pred             ccCCCCCcEEecccccccCCCCCCCCCcccc--cccccccCCCEEEecCCCcccccc----cccccccccccccccccc
Q 039475          112 LENLIHLRYLKLSAVEELSETCYCPSLKRLP--QGRGKLINLRHLIFDKDYLAYMAN----GFERLTSLRTLSGFTVAR  184 (286)
Q Consensus       112 i~~L~~Lr~L~L~~~~~LP~~~~~~~l~~LP--~~i~~L~~L~~L~l~~~~~~~lP~----~i~~L~~L~~L~~~~~~~  184 (286)
                      ++++++|++|++++          +.++.+|  ..++++++|++|++++|.+..+|.    .++.+++|++|++..+..
T Consensus        91 ~~~l~~L~~L~Ls~----------N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~  159 (168)
T 2ell_A           91 AEKLPNLTHLNLSG----------NKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDRED  159 (168)
T ss_dssp             HHHCTTCCEEECBS----------SSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTS
T ss_pred             HhhCCCCCEEeccC----------CccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCCh
Confidence            77788888888885          5677776  678888888888888888888776    588888888888776643

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=99.49  E-value=1.3e-13  Score=112.95  Aligned_cols=145  Identities=16%  Similarity=0.135  Sum_probs=120.2

Q ss_pred             cCCceEEEeecCCCCCCchhhhcCCCCcEEEeccCCCCCCCcCccchhhhcCCCCCcEEEeecccCCccCcc-cCccccC
Q 039475           36 QEKLRHLTLMLGLPTKFPVSIFDAKKLRSLSLFYDSKGQSAASPVLQGLFDQLTCLRALKIEELWYGDQTIE-IPKGLEN  114 (286)
Q Consensus        36 ~~~~r~ls~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~i~~-lP~~i~~  114 (286)
                      ..+++++.+..+.+..++ .+..+++|++|++.++...       .+..+..++.|++|++++    +.+.. .|..++.
T Consensus        43 l~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~l~~n~~~-------~~~~l~~l~~L~~L~l~~----n~l~~~~~~~l~~  110 (197)
T 4ezg_A           43 MNSLTYITLANINVTDLT-GIEYAHNIKDLTINNIHAT-------NYNPISGLSNLERLRIMG----KDVTSDKIPNLSG  110 (197)
T ss_dssp             HHTCCEEEEESSCCSCCT-TGGGCTTCSEEEEESCCCS-------CCGGGTTCTTCCEEEEEC----TTCBGGGSCCCTT
T ss_pred             cCCccEEeccCCCccChH-HHhcCCCCCEEEccCCCCC-------cchhhhcCCCCCEEEeEC----CccCcccChhhcC
Confidence            467899999999888777 6889999999999999543       234678999999999999    99875 7889999


Q ss_pred             CCCCcEEecccccccCCCCCCCCCcc-cccccccccCCCEEEecCCC-cccccccccccccccccccccccccCCccCCC
Q 039475          115 LIHLRYLKLSAVEELSETCYCPSLKR-LPQGRGKLINLRHLIFDKDY-LAYMANGFERLTSLRTLSGFTVARVGGKYSSE  192 (286)
Q Consensus       115 L~~Lr~L~L~~~~~LP~~~~~~~l~~-LP~~i~~L~~L~~L~l~~~~-~~~lP~~i~~L~~L~~L~~~~~~~~~~~~~~~  192 (286)
                      +++|++|++++          +.+.. .|..++++++|++|++++|. +..+| .++.+++|++|++..+...       
T Consensus       111 l~~L~~L~Ls~----------n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~-~l~~l~~L~~L~l~~n~i~-------  172 (197)
T 4ezg_A          111 LTSLTLLDISH----------SAHDDSILTKINTLPKVNSIDLSYNGAITDIM-PLKTLPELKSLNIQFDGVH-------  172 (197)
T ss_dssp             CTTCCEEECCS----------SBCBGGGHHHHTTCSSCCEEECCSCTBCCCCG-GGGGCSSCCEEECTTBCCC-------
T ss_pred             CCCCCEEEecC----------CccCcHhHHHHhhCCCCCEEEccCCCCccccH-hhcCCCCCCEEECCCCCCc-------
Confidence            99999999995          55664 78889999999999999997 88887 7999999999999877644       


Q ss_pred             CCCcccccCcccccceeEEcc
Q 039475          193 ACNLEGLRNLNHLRQFLRICG  213 (286)
Q Consensus       193 ~~~~~~l~~L~~L~~~L~i~~  213 (286)
                        .+..+..+++|+ .|.+.+
T Consensus       173 --~~~~l~~l~~L~-~L~l~~  190 (197)
T 4ezg_A          173 --DYRGIEDFPKLN-QLYAFS  190 (197)
T ss_dssp             --CCTTGGGCSSCC-EEEECB
T ss_pred             --ChHHhccCCCCC-EEEeeC
Confidence              233566677777 787764

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.48  E-value=4.7e-14  Score=131.55  Aligned_cols=179  Identities=14%  Similarity=0.132  Sum_probs=111.3

Q ss_pred             CCceEEEeecCCCCCC-chhhhcCCCCcEEEeccCCCCCCCcCccchhhhcCCCCCcEEEeecccCCccCcccCccccCC
Q 039475           37 EKLRHLTLMLGLPTKF-PVSIFDAKKLRSLSLFYDSKGQSAASPVLQGLFDQLTCLRALKIEELWYGDQTIEIPKGLENL  115 (286)
Q Consensus        37 ~~~r~ls~~~~~~~~~-~~~~~~l~~Lr~L~l~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~i~~lP~~i~~L  115 (286)
                      .+++.|.+..+.+..+ |..+..+++|++|++++|.....     .|  |..++.|++|+|++    |.+..+|..    
T Consensus        34 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~-----~~--l~~l~~L~~L~Ls~----N~l~~l~~~----   98 (487)
T 3oja_A           34 WNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYET-----LD--LESLSTLRTLDLNN----NYVQELLVG----   98 (487)
T ss_dssp             GGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEE-----EE--CTTCTTCCEEECCS----SEEEEEEEC----
T ss_pred             CCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCC-----cc--cccCCCCCEEEecC----CcCCCCCCC----
Confidence            4688888888887555 45788889999999988876432     33  77888888888888    777766532    


Q ss_pred             CCCcEEeccc--ccccCCC-C--------CCCCCccc-ccccccccCCCEEEecCCCcccc-ccccc-cccccccccccc
Q 039475          116 IHLRYLKLSA--VEELSET-C--------YCPSLKRL-PQGRGKLINLRHLIFDKDYLAYM-ANGFE-RLTSLRTLSGFT  181 (286)
Q Consensus       116 ~~Lr~L~L~~--~~~LP~~-~--------~~~~l~~L-P~~i~~L~~L~~L~l~~~~~~~l-P~~i~-~L~~L~~L~~~~  181 (286)
                      ++|++|++++  +..+|.. .        ..+.+..+ |..++++++|++|++++|.+..+ |..+. .+++|++|++..
T Consensus        99 ~~L~~L~L~~N~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~  178 (487)
T 3oja_A           99 PSIETLHAANNNISRVSCSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQY  178 (487)
T ss_dssp             TTCCEEECCSSCCCCEEECCCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTT
T ss_pred             CCcCEEECcCCcCCCCCccccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCC
Confidence            5666666665  4443333 2        22334444 45677777788888877777753 44454 677777777766


Q ss_pred             ccccCCccCCCCCCcccccCcccccceeEEcccCCcccchhhhhhcCCCCCCceEEEEeCCCC
Q 039475          182 VARVGGKYSSEACNLEGLRNLNHLRQFLRICGLGNLQMRLKINAHLEKKKNLVHLTLDFDKGE  244 (286)
Q Consensus       182 ~~~~~~~~~~~~~~~~~l~~L~~L~~~L~i~~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~  244 (286)
                      +...         .+.....+++|+ .|.+.+..-    ..++..+..+++|+.|+|+.|..+
T Consensus       179 N~l~---------~~~~~~~l~~L~-~L~Ls~N~l----~~~~~~~~~l~~L~~L~Ls~N~l~  227 (487)
T 3oja_A          179 NFIY---------DVKGQVVFAKLK-TLDLSSNKL----AFMGPEFQSAAGVTWISLRNNKLV  227 (487)
T ss_dssp             SCCC---------EEECCCCCTTCC-EEECCSSCC----CEECGGGGGGTTCSEEECTTSCCC
T ss_pred             Cccc---------cccccccCCCCC-EEECCCCCC----CCCCHhHcCCCCccEEEecCCcCc
Confidence            6533         112233455555 555553211    112233555666666666666654

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=99.48  E-value=1.6e-13  Score=114.60  Aligned_cols=132  Identities=24%  Similarity=0.309  Sum_probs=114.2

Q ss_pred             ccCCceEEEeecCCCCCCch-hhhcCCCCcEEEeccCCCCCCCcCccchhhhcCCCCCcEEEeecccCCccCcccCcc-c
Q 039475           35 CQEKLRHLTLMLGLPTKFPV-SIFDAKKLRSLSLFYDSKGQSAASPVLQGLFDQLTCLRALKIEELWYGDQTIEIPKG-L  112 (286)
Q Consensus        35 ~~~~~r~ls~~~~~~~~~~~-~~~~l~~Lr~L~l~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~i~~lP~~-i  112 (286)
                      ++..++.|.+..+.+..++. .+..+++|+.|++++|.....     .|..|.++++|++|+|++    |.+..+|.. +
T Consensus        30 l~~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~-----~~~~~~~l~~L~~L~Ls~----N~l~~l~~~~f  100 (220)
T 2v9t_B           30 LPETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISEL-----APDAFQGLRSLNSLVLYG----NKITELPKSLF  100 (220)
T ss_dssp             CCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEE-----CTTTTTTCSSCCEEECCS----SCCCCCCTTTT
T ss_pred             cCcCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCc-----CHHHhhCCcCCCEEECCC----CcCCccCHhHc
Confidence            45679999999998876654 688899999999999986542     678899999999999999    999999986 5


Q ss_pred             cCCCCCcEEecccccccCCCCCCCCCccc-ccccccccCCCEEEecCCCccccccc-cccccccccccccccccc
Q 039475          113 ENLIHLRYLKLSAVEELSETCYCPSLKRL-PQGRGKLINLRHLIFDKDYLAYMANG-FERLTSLRTLSGFTVARV  185 (286)
Q Consensus       113 ~~L~~Lr~L~L~~~~~LP~~~~~~~l~~L-P~~i~~L~~L~~L~l~~~~~~~lP~~-i~~L~~L~~L~~~~~~~~  185 (286)
                      +.+.+|++|+|++          +.+..+ |..+..+++|++|++++|.+..+|.+ ++.+++|++|++..+...
T Consensus       101 ~~l~~L~~L~L~~----------N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~  165 (220)
T 2v9t_B          101 EGLFSLQLLLLNA----------NKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPFI  165 (220)
T ss_dssp             TTCTTCCEEECCS----------SCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCEE
T ss_pred             cCCCCCCEEECCC----------CCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCcC
Confidence            8999999999996          678877 46789999999999999999988876 999999999998776543

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=99.48  E-value=3.1e-13  Score=115.97  Aligned_cols=160  Identities=20%  Similarity=0.149  Sum_probs=91.7

Q ss_pred             eecCCCCCCchhhhcCCCCcEEEeccCCCCCCCcCccchhhhcCCCCCcEEEeecccCCccCcccCccccCCCCCcEEec
Q 039475           44 LMLGLPTKFPVSIFDAKKLRSLSLFYDSKGQSAASPVLQGLFDQLTCLRALKIEELWYGDQTIEIPKGLENLIHLRYLKL  123 (286)
Q Consensus        44 ~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~i~~lP~~i~~L~~Lr~L~L  123 (286)
                      +..+....++ .+..+++|++|++.++....      ++ .+..+++|++|++++    |.+..+|. ++++++|++|++
T Consensus        26 l~~~~i~~~~-~~~~l~~L~~L~l~~n~i~~------l~-~l~~l~~L~~L~L~~----N~i~~~~~-l~~l~~L~~L~L   92 (263)
T 1xeu_A           26 LGKQSVTDLV-SQKELSGVQNFNGDNSNIQS------LA-GMQFFTNLKELHLSH----NQISDLSP-LKDLTKLEELSV   92 (263)
T ss_dssp             HTCSCTTSEE-CHHHHTTCSEEECTTSCCCC------CT-TGGGCTTCCEEECCS----SCCCCCGG-GTTCSSCCEEEC
T ss_pred             hcCCCccccc-chhhcCcCcEEECcCCCccc------ch-HHhhCCCCCEEECCC----CccCCChh-hccCCCCCEEEC
Confidence            3333433333 45566677777776665432      33 356667777777777    66666665 667777777777


Q ss_pred             ccccccCCCCCCCCCcccccccccccCCCEEEecCCCcccccccccccccccccccccccccCCccCCCCCCcccccCcc
Q 039475          124 SAVEELSETCYCPSLKRLPQGRGKLINLRHLIFDKDYLAYMANGFERLTSLRTLSGFTVARVGGKYSSEACNLEGLRNLN  203 (286)
Q Consensus       124 ~~~~~LP~~~~~~~l~~LP~~i~~L~~L~~L~l~~~~~~~lP~~i~~L~~L~~L~~~~~~~~~~~~~~~~~~~~~l~~L~  203 (286)
                      ++          +.++.+|....  .+|++|++++|.+..+| .++.+++|++|++..+...         .+..+..++
T Consensus        93 ~~----------N~l~~l~~~~~--~~L~~L~L~~N~l~~~~-~l~~l~~L~~L~Ls~N~i~---------~~~~l~~l~  150 (263)
T 1xeu_A           93 NR----------NRLKNLNGIPS--ACLSRLFLDNNELRDTD-SLIHLKNLEILSIRNNKLK---------SIVMLGFLS  150 (263)
T ss_dssp             CS----------SCCSCCTTCCC--SSCCEEECCSSCCSBSG-GGTTCTTCCEEECTTSCCC---------BCGGGGGCT
T ss_pred             CC----------CccCCcCcccc--CcccEEEccCCccCCCh-hhcCcccccEEECCCCcCC---------CChHHccCC
Confidence            64          45555554323  66666666666666654 4666666666666555433         122445555


Q ss_pred             cccceeEEcccCCcccchhhhhhcCCCCCCceEEEEeCCCC
Q 039475          204 HLRQFLRICGLGNLQMRLKINAHLEKKKNLVHLTLDFDKGE  244 (286)
Q Consensus       204 ~L~~~L~i~~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~  244 (286)
                      +|+ .|.+.+..-   .+.  ..+..+++|+.|+++.|...
T Consensus       151 ~L~-~L~L~~N~i---~~~--~~l~~l~~L~~L~l~~N~~~  185 (263)
T 1xeu_A          151 KLE-VLDLHGNEI---TNT--GGLTRLKKVNWIDLTGQKCV  185 (263)
T ss_dssp             TCC-EEECTTSCC---CBC--TTSTTCCCCCEEEEEEEEEE
T ss_pred             CCC-EEECCCCcC---cch--HHhccCCCCCEEeCCCCccc
Confidence            555 555543211   111  44666667777777766554

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=99.48  E-value=7.9e-14  Score=108.96  Aligned_cols=124  Identities=21%  Similarity=0.220  Sum_probs=94.2

Q ss_pred             cCCceEEEeecCCCC--CCchhhhcCCCCcEEEeccCCCCCCCcCccchhhhcCCCCCcEEEeecccCCccCcc-cCccc
Q 039475           36 QEKLRHLTLMLGLPT--KFPVSIFDAKKLRSLSLFYDSKGQSAASPVLQGLFDQLTCLRALKIEELWYGDQTIE-IPKGL  112 (286)
Q Consensus        36 ~~~~r~ls~~~~~~~--~~~~~~~~l~~Lr~L~l~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~i~~-lP~~i  112 (286)
                      +.+++++.+..+...  .+|..+..+++|+.|++.+|....      + ..+..++.|++|++++    |.+.. +|..+
T Consensus        16 ~~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~------~-~~~~~l~~L~~L~Ls~----n~i~~~~~~~~   84 (149)
T 2je0_A           16 PSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTS------I-ANLPKLNKLKKLELSD----NRVSGGLEVLA   84 (149)
T ss_dssp             GGGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCC------C-TTCCCCTTCCEEECCS----SCCCSCTHHHH
T ss_pred             CccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCC------c-hhhhcCCCCCEEECCC----CcccchHHHHh
Confidence            466788888887775  677777788888888888876543      3 4567788888888888    88776 77777


Q ss_pred             cCCCCCcEEecccccccCCCCCCCCCcccc--cccccccCCCEEEecCCCcccccc----cccccccccccccc
Q 039475          113 ENLIHLRYLKLSAVEELSETCYCPSLKRLP--QGRGKLINLRHLIFDKDYLAYMAN----GFERLTSLRTLSGF  180 (286)
Q Consensus       113 ~~L~~Lr~L~L~~~~~LP~~~~~~~l~~LP--~~i~~L~~L~~L~l~~~~~~~lP~----~i~~L~~L~~L~~~  180 (286)
                      +.+++|++|++++          +.+..+|  ..++.+++|++|++++|.+..+|.    .++.+++|+.|++.
T Consensus        85 ~~l~~L~~L~ls~----------N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~  148 (149)
T 2je0_A           85 EKCPNLTHLNLSG----------NKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGY  148 (149)
T ss_dssp             HHCTTCCEEECTT----------SCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTB
T ss_pred             hhCCCCCEEECCC----------CcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCC
Confidence            7788888888875          5577665  678888888888888888887765    47788888877654

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=99.48  E-value=3.5e-13  Score=128.79  Aligned_cols=170  Identities=19%  Similarity=0.161  Sum_probs=136.0

Q ss_pred             cCCceEEEeecCCCCCCchhhhcCCCCcEEEeccCCCCCCCcCccchhhhcCCCCCcEEEeecccCCccCcccCccccCC
Q 039475           36 QEKLRHLTLMLGLPTKFPVSIFDAKKLRSLSLFYDSKGQSAASPVLQGLFDQLTCLRALKIEELWYGDQTIEIPKGLENL  115 (286)
Q Consensus        36 ~~~~r~ls~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~i~~lP~~i~~L  115 (286)
                      ...++.|.+..+.+..++ .+..+++|+.|++++|....      ++. +..++.|++|+|++    |.+..+| .++.+
T Consensus        42 L~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~Ls~N~l~~------~~~-l~~l~~L~~L~Ls~----N~l~~l~-~l~~l  108 (605)
T 1m9s_A           42 LNSIDQIIANNSDIKSVQ-GIQYLPNVTKLFLNGNKLTD------IKP-LTNLKNLGWLFLDE----NKIKDLS-SLKDL  108 (605)
T ss_dssp             HTTCCCCBCTTCCCCCCT-TGGGCTTCCEEECTTSCCCC------CGG-GGGCTTCCEEECCS----SCCCCCT-TSTTC
T ss_pred             CCCCCEEECcCCCCCCCh-HHccCCCCCEEEeeCCCCCC------Chh-hccCCCCCEEECcC----CCCCCCh-hhccC
Confidence            456788888888776665 58889999999999998654      344 78999999999999    9998877 79999


Q ss_pred             CCCcEEecccccccCCCCCCCCCcccccccccccCCCEEEecCCCcccccccccccccccccccccccccCCccCCCCCC
Q 039475          116 IHLRYLKLSAVEELSETCYCPSLKRLPQGRGKLINLRHLIFDKDYLAYMANGFERLTSLRTLSGFTVARVGGKYSSEACN  195 (286)
Q Consensus       116 ~~Lr~L~L~~~~~LP~~~~~~~l~~LP~~i~~L~~L~~L~l~~~~~~~lP~~i~~L~~L~~L~~~~~~~~~~~~~~~~~~  195 (286)
                      .+|++|+|++          +.+..+| .+..+++|+.|++++|.+..+ ..++.+++|+.|++..+...         .
T Consensus       109 ~~L~~L~Ls~----------N~l~~l~-~l~~l~~L~~L~Ls~N~l~~l-~~l~~l~~L~~L~Ls~N~l~---------~  167 (605)
T 1m9s_A          109 KKLKSLSLEH----------NGISDIN-GLVHLPQLESLYLGNNKITDI-TVLSRLTKLDTLSLEDNQIS---------D  167 (605)
T ss_dssp             TTCCEEECTT----------SCCCCCG-GGGGCTTCSEEECCSSCCCCC-GGGGSCTTCSEEECCSSCCC---------C
T ss_pred             CCCCEEEecC----------CCCCCCc-cccCCCccCEEECCCCccCCc-hhhcccCCCCEEECcCCcCC---------C
Confidence            9999999986          6677775 589999999999999999888 57999999999998877644         1


Q ss_pred             cccccCcccccceeEEcccCCcccchhhhhhcCCCCCCceEEEEeCCCCC
Q 039475          196 LEGLRNLNHLRQFLRICGLGNLQMRLKINAHLEKKKNLVHLTLDFDKGED  245 (286)
Q Consensus       196 ~~~l~~L~~L~~~L~i~~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~  245 (286)
                      +..+..+++|+ .|.+.+..-   .+ + ..+..+++|+.|+|+.|....
T Consensus       168 ~~~l~~l~~L~-~L~Ls~N~i---~~-l-~~l~~l~~L~~L~L~~N~l~~  211 (605)
T 1m9s_A          168 IVPLAGLTKLQ-NLYLSKNHI---SD-L-RALAGLKNLDVLELFSQECLN  211 (605)
T ss_dssp             CGGGTTCTTCC-EEECCSSCC---CB-C-GGGTTCTTCSEEECCSEEEEC
T ss_pred             chhhccCCCCC-EEECcCCCC---CC-C-hHHccCCCCCEEEccCCcCcC
Confidence            22277777777 788775411   11 1 458889999999999887653

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=99.47  E-value=5.3e-14  Score=123.83  Aligned_cols=132  Identities=14%  Similarity=0.090  Sum_probs=81.8

Q ss_pred             CCceEEEeecCCCCCCc-hhhhcCCCCcEEEeccCCCCCCCcCccchhhhcCCCCCcEEEeecccCCccCcccCccccCC
Q 039475           37 EKLRHLTLMLGLPTKFP-VSIFDAKKLRSLSLFYDSKGQSAASPVLQGLFDQLTCLRALKIEELWYGDQTIEIPKGLENL  115 (286)
Q Consensus        37 ~~~r~ls~~~~~~~~~~-~~~~~l~~Lr~L~l~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~i~~lP~~i~~L  115 (286)
                      .+++++.+..+.+..++ ..+..+++|++|++++|....      .+. |..++.|++|++++    |.+..+|.    .
T Consensus        34 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~------~~~-~~~l~~L~~L~Ls~----n~l~~l~~----~   98 (317)
T 3o53_A           34 WNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYE------TLD-LESLSTLRTLDLNN----NYVQELLV----G   98 (317)
T ss_dssp             GGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEE------EEE-ETTCTTCCEEECCS----SEEEEEEE----C
T ss_pred             CCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCc------chh-hhhcCCCCEEECcC----CccccccC----C
Confidence            46888888888875554 578888999999998887643      222 77888888888888    77766552    2


Q ss_pred             CCCcEEeccc--ccccCCC-C--------CCCCCcccc-cccccccCCCEEEecCCCccccc-ccc-ccccccccccccc
Q 039475          116 IHLRYLKLSA--VEELSET-C--------YCPSLKRLP-QGRGKLINLRHLIFDKDYLAYMA-NGF-ERLTSLRTLSGFT  181 (286)
Q Consensus       116 ~~Lr~L~L~~--~~~LP~~-~--------~~~~l~~LP-~~i~~L~~L~~L~l~~~~~~~lP-~~i-~~L~~L~~L~~~~  181 (286)
                      .+|++|++++  +..+|.. .        ..+.+..++ ..++.+++|++|++++|.+..++ ..+ +.+++|++|++..
T Consensus        99 ~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~  178 (317)
T 3o53_A           99 PSIETLHAANNNISRVSCSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQY  178 (317)
T ss_dssp             TTCCEEECCSSCCSEEEECCCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTT
T ss_pred             CCcCEEECCCCccCCcCccccCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcccHHHHhhccCcCCEEECCC
Confidence            5555555554  3333322 1        223344443 35566666666666666666543 233 3556666666555


Q ss_pred             cc
Q 039475          182 VA  183 (286)
Q Consensus       182 ~~  183 (286)
                      +.
T Consensus       179 N~  180 (317)
T 3o53_A          179 NF  180 (317)
T ss_dssp             SC
T ss_pred             Cc
Confidence            43

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.47  E-value=1e-13  Score=129.24  Aligned_cols=177  Identities=15%  Similarity=0.082  Sum_probs=130.3

Q ss_pred             EeecCCCCCCchhhhcCC----CCcEEEeccCCCCCCCcCccchhhhcCCCCCcEEEeecccCCccCcccCccccCCCCC
Q 039475           43 TLMLGLPTKFPVSIFDAK----KLRSLSLFYDSKGQSAASPVLQGLFDQLTCLRALKIEELWYGDQTIEIPKGLENLIHL  118 (286)
Q Consensus        43 s~~~~~~~~~~~~~~~l~----~Lr~L~l~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~i~~lP~~i~~L~~L  118 (286)
                      .+..-....+|..+..+.    +|++|+++++.....     .|..|..++.|++|+|++    |.+..+++ ++.+++|
T Consensus        13 ~~~~~~~~~l~~~l~~l~~~~~~L~~L~Ls~n~l~~~-----~~~~~~~l~~L~~L~Ls~----N~l~~~~~-l~~l~~L   82 (487)
T 3oja_A           13 KIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQI-----SAADLAPFTKLELLNLSS----NVLYETLD-LESLSTL   82 (487)
T ss_dssp             EEESCCTTTHHHHHHTTSTTGGGCCEEECCSSCCCCC-----CGGGGTTCTTCCEEECTT----SCCEEEEE-CTTCTTC
T ss_pred             ecccCchhhhHHHHHHhcccCCCccEEEeeCCcCCCC-----CHHHHhCCCCCCEEEeeC----CCCCCCcc-cccCCCC
Confidence            333333344566666555    899999999987643     678899999999999999    99887665 9999999


Q ss_pred             cEEeccc--ccccCCC-C------CCCCCcccccccccccCCCEEEecCCCccccc-ccccccccccccccccccccCCc
Q 039475          119 RYLKLSA--VEELSET-C------YCPSLKRLPQGRGKLINLRHLIFDKDYLAYMA-NGFERLTSLRTLSGFTVARVGGK  188 (286)
Q Consensus       119 r~L~L~~--~~~LP~~-~------~~~~l~~LP~~i~~L~~L~~L~l~~~~~~~lP-~~i~~L~~L~~L~~~~~~~~~~~  188 (286)
                      ++|+|++  +..+|.. .      ..+.+..+|..  .+++|++|++++|.+..++ ..++.+++|++|++..+...   
T Consensus        83 ~~L~Ls~N~l~~l~~~~~L~~L~L~~N~l~~~~~~--~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~---  157 (487)
T 3oja_A           83 RTLDLNNNYVQELLVGPSIETLHAANNNISRVSCS--RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEID---  157 (487)
T ss_dssp             CEEECCSSEEEEEEECTTCCEEECCSSCCCCEEEC--CCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCC---
T ss_pred             CEEEecCCcCCCCCCCCCcCEEECcCCcCCCCCcc--ccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCC---
Confidence            9999998  6666644 2      33446666543  5788999999999999774 46999999999998877654   


Q ss_pred             cCCCCCCccccc-CcccccceeEEcccCCcccchhhhhhcCCCCCCceEEEEeCCCC
Q 039475          189 YSSEACNLEGLR-NLNHLRQFLRICGLGNLQMRLKINAHLEKKKNLVHLTLDFDKGE  244 (286)
Q Consensus       189 ~~~~~~~~~~l~-~L~~L~~~L~i~~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~  244 (286)
                          +..+..+. .+++|+ .|.+.+..- ..   . .....+++|+.|+|++|..+
T Consensus       158 ----~~~~~~l~~~l~~L~-~L~Ls~N~l-~~---~-~~~~~l~~L~~L~Ls~N~l~  204 (487)
T 3oja_A          158 ----TVNFAELAASSDTLE-HLNLQYNFI-YD---V-KGQVVFAKLKTLDLSSNKLA  204 (487)
T ss_dssp             ----EEEGGGGGGGTTTCC-EEECTTSCC-CE---E-ECCCCCTTCCEEECCSSCCC
T ss_pred             ----CcChHHHhhhCCccc-EEecCCCcc-cc---c-cccccCCCCCEEECCCCCCC
Confidence                23344443 567777 787775421 11   1 23446899999999999887

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=99.46  E-value=1.4e-13  Score=134.38  Aligned_cols=112  Identities=22%  Similarity=0.247  Sum_probs=75.6

Q ss_pred             chhhhcCCCCcEEEeccCCCCCCCcCccchhhhcCCCCCcEEEeecccCCccCcccCccccCCCCCcEEecccccccCCC
Q 039475           53 PVSIFDAKKLRSLSLFYDSKGQSAASPVLQGLFDQLTCLRALKIEELWYGDQTIEIPKGLENLIHLRYLKLSAVEELSET  132 (286)
Q Consensus        53 ~~~~~~l~~Lr~L~l~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~i~~lP~~i~~L~~Lr~L~L~~~~~LP~~  132 (286)
                      +..+..++.|+.|++++|....      +|..+.+++.|++|+|++    |.+..+|.+|++|.+|++|+|++       
T Consensus       217 ~~~~~~l~~L~~L~Ls~n~l~~------l~~~~~~l~~L~~L~Ls~----N~l~~lp~~~~~l~~L~~L~Ls~-------  279 (727)
T 4b8c_D          217 KDSKYDDQLWHALDLSNLQIFN------ISANIFKYDFLTRLYLNG----NSLTELPAEIKNLSNLRVLDLSH-------  279 (727)
T ss_dssp             -----CCCCCCEEECTTSCCSC------CCGGGGGCCSCSCCBCTT----SCCSCCCGGGGGGTTCCEEECTT-------
T ss_pred             hhhhccCCCCcEEECCCCCCCC------CChhhcCCCCCCEEEeeC----CcCcccChhhhCCCCCCEEeCcC-------
Confidence            4445666777777777766542      444445677777777777    77777777777777777777764       


Q ss_pred             CCCCCCcccccccccccCCCEEEecCCCcccccccccccccccccccccccc
Q 039475          133 CYCPSLKRLPQGRGKLINLRHLIFDKDYLAYMANGFERLTSLRTLSGFTVAR  184 (286)
Q Consensus       133 ~~~~~l~~LP~~i~~L~~L~~L~l~~~~~~~lP~~i~~L~~L~~L~~~~~~~  184 (286)
                         +.+..+|.+|++|++|++|++++|.+..+|.+|++|++|++|++..+..
T Consensus       280 ---N~l~~lp~~~~~l~~L~~L~L~~N~l~~lp~~~~~l~~L~~L~L~~N~l  328 (727)
T 4b8c_D          280 ---NRLTSLPAELGSCFQLKYFYFFDNMVTTLPWEFGNLCNLQFLGVEGNPL  328 (727)
T ss_dssp             ---SCCSSCCSSGGGGTTCSEEECCSSCCCCCCSSTTSCTTCCCEECTTSCC
T ss_pred             ---CcCCccChhhcCCCCCCEEECCCCCCCccChhhhcCCCccEEeCCCCcc
Confidence               5577777777777777777777777777777777777777777766543

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=99.46  E-value=3.5e-13  Score=130.14  Aligned_cols=172  Identities=17%  Similarity=0.126  Sum_probs=128.3

Q ss_pred             EEEeecCCCCCCchhhhcCCCCcEEEeccCCCCCCCcCccchhhhcCCCCCcEEEeecccCCccCccc-CccccCCCCCc
Q 039475           41 HLTLMLGLPTKFPVSIFDAKKLRSLSLFYDSKGQSAASPVLQGLFDQLTCLRALKIEELWYGDQTIEI-PKGLENLIHLR  119 (286)
Q Consensus        41 ~ls~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~i~~l-P~~i~~L~~Lr  119 (286)
                      .+.........+|..+.  +++++|+++++.....     .+..|.++++|++|++++    +.+..+ |..++++++|+
T Consensus         8 ~~~cs~~~L~~ip~~~~--~~l~~L~Ls~n~l~~~-----~~~~~~~l~~L~~L~Ls~----n~l~~~~~~~~~~l~~L~   76 (680)
T 1ziw_A            8 VADCSHLKLTQVPDDLP--TNITVLNLTHNQLRRL-----PAANFTRYSQLTSLDVGF----NTISKLEPELCQKLPMLK   76 (680)
T ss_dssp             EEECCSSCCSSCCSCSC--TTCSEEECCSSCCCCC-----CGGGGGGGTTCSEEECCS----SCCCCCCTTHHHHCTTCC
T ss_pred             eeECCCCCccccccccC--CCCcEEECCCCCCCCc-----CHHHHhCCCcCcEEECCC----CccCccCHHHHhcccCcC
Confidence            45555555566776653  7999999999986542     566799999999999999    988866 66889999999


Q ss_pred             EEecccccccCCCCCCCCCccccc-ccccccCCCEEEecCCCcccccc-cccccccccccccccccccCCccCCCCCCcc
Q 039475          120 YLKLSAVEELSETCYCPSLKRLPQ-GRGKLINLRHLIFDKDYLAYMAN-GFERLTSLRTLSGFTVARVGGKYSSEACNLE  197 (286)
Q Consensus       120 ~L~L~~~~~LP~~~~~~~l~~LP~-~i~~L~~L~~L~l~~~~~~~lP~-~i~~L~~L~~L~~~~~~~~~~~~~~~~~~~~  197 (286)
                      +|++++          +.+..+|. .|+++++|++|++++|.+..+|+ .|+++++|++|++..+...       +....
T Consensus        77 ~L~L~~----------n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~-------~~~~~  139 (680)
T 1ziw_A           77 VLNLQH----------NELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLS-------STKLG  139 (680)
T ss_dssp             EEECCS----------SCCCCCCTTTTTTCTTCSEEECCSSCCCCCCSCTTTTCTTCCEEECCSSCCS-------CCCCC
T ss_pred             EEECCC----------CccCccChhhhccCCCCCEEECCCCccCccChhHccccCCCCEEECCCCccc-------ccCch
Confidence            999986          66888886 58899999999999988888774 5899999999988877544       33445


Q ss_pred             cccCcccccceeEEcccCCcccchhhhhh--cCCCCCCceEEEEeCCCC
Q 039475          198 GLRNLNHLRQFLRICGLGNLQMRLKINAH--LEKKKNLVHLTLDFDKGE  244 (286)
Q Consensus       198 ~l~~L~~L~~~L~i~~l~~~~~~~~~~~~--l~~l~~L~~L~L~~~~~~  244 (286)
                      .+.++++|+ .|.+.+..- ..  ..+..  ...+++|+.|++++|...
T Consensus       140 ~~~~l~~L~-~L~L~~n~l-~~--~~~~~~~~~~~~~L~~L~L~~n~l~  184 (680)
T 1ziw_A          140 TQVQLENLQ-ELLLSNNKI-QA--LKSEELDIFANSSLKKLELSSNQIK  184 (680)
T ss_dssp             SSSCCTTCC-EEECCSSCC-CC--BCHHHHGGGTTCEESEEECTTCCCC
T ss_pred             hhcccccCC-EEEccCCcc-cc--cCHHHhhccccccccEEECCCCccc
Confidence            566777777 777765321 11  11122  234578888888888665

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=99.46  E-value=5.2e-13  Score=111.50  Aligned_cols=122  Identities=19%  Similarity=0.268  Sum_probs=59.2

Q ss_pred             EEEeecCCCCCCchhhhcCCCCcEEEeccCCCCCCCcCccchhhhcCCCCCcEEEeecccCCccCcccCc-cccCCCCCc
Q 039475           41 HLTLMLGLPTKFPVSIFDAKKLRSLSLFYDSKGQSAASPVLQGLFDQLTCLRALKIEELWYGDQTIEIPK-GLENLIHLR  119 (286)
Q Consensus        41 ~ls~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~i~~lP~-~i~~L~~Lr  119 (286)
                      .+.+..+....+|..+  ...++.|++++|......    .+..|..++.|++|+|++    +.+..++. .++++.+|+
T Consensus        15 ~l~~s~n~l~~iP~~~--~~~~~~L~L~~N~l~~~~----~~~~~~~l~~L~~L~L~~----N~i~~i~~~~~~~l~~L~   84 (220)
T 2v70_A           15 TVDCSNQKLNKIPEHI--PQYTAELRLNNNEFTVLE----ATGIFKKLPQLRKINFSN----NKITDIEEGAFEGASGVN   84 (220)
T ss_dssp             EEECCSSCCSSCCSCC--CTTCSEEECCSSCCCEEC----CCCCGGGCTTCCEEECCS----SCCCEECTTTTTTCTTCC
T ss_pred             EeEeCCCCcccCccCC--CCCCCEEEcCCCcCCccC----chhhhccCCCCCEEECCC----CcCCEECHHHhCCCCCCC
Confidence            4444444444444433  233455555555443210    112345555555555555    55554443 455555555


Q ss_pred             EEecccccccCCCCCCCCCcccccc-cccccCCCEEEecCCCcccc-cccccccccccccccccc
Q 039475          120 YLKLSAVEELSETCYCPSLKRLPQG-RGKLINLRHLIFDKDYLAYM-ANGFERLTSLRTLSGFTV  182 (286)
Q Consensus       120 ~L~L~~~~~LP~~~~~~~l~~LP~~-i~~L~~L~~L~l~~~~~~~l-P~~i~~L~~L~~L~~~~~  182 (286)
                      +|+|++          +.+..+|.. +..+++|++|++++|.+..+ |..|+.+++|++|++..+
T Consensus        85 ~L~Ls~----------N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N  139 (220)
T 2v70_A           85 EILLTS----------NRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDN  139 (220)
T ss_dssp             EEECCS----------SCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTS
T ss_pred             EEECCC----------CccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCC
Confidence            555553          444444432 45555555555555555544 233555555555555444

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=99.46  E-value=5.1e-13  Score=127.18  Aligned_cols=138  Identities=20%  Similarity=0.183  Sum_probs=112.5

Q ss_pred             CCCCchhhhcCCCCcEEEeccCCCCCCCcCccchhhhcCCCCCcEEEeecccCCccCcccCc-cccCCCCCcEEeccccc
Q 039475           49 PTKFPVSIFDAKKLRSLSLFYDSKGQSAASPVLQGLFDQLTCLRALKIEELWYGDQTIEIPK-GLENLIHLRYLKLSAVE  127 (286)
Q Consensus        49 ~~~~~~~~~~l~~Lr~L~l~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~i~~lP~-~i~~L~~Lr~L~L~~~~  127 (286)
                      ...+|..+  -+.+++|++++|.....     .+..|.++++|++|+|++    |.+..+|+ +|++|++|++|+|++  
T Consensus        43 l~~vP~~l--p~~~~~LdLs~N~i~~l-----~~~~f~~l~~L~~L~Ls~----N~i~~i~~~~f~~L~~L~~L~Ls~--  109 (635)
T 4g8a_A           43 FYKIPDNL--PFSTKNLDLSFNPLRHL-----GSYSFFSFPELQVLDLSR----CEIQTIEDGAYQSLSHLSTLILTG--  109 (635)
T ss_dssp             CSSCCSSS--CTTCCEEECTTSCCCEE-----CTTTTTTCTTCCEEECTT----CCCCEECTTTTTTCTTCCEEECTT--
T ss_pred             cCccCCCC--CcCCCEEEeeCCCCCCC-----CHHHHhCCCCCCEEECCC----CcCCCcChhHhcCCCCCCEEEccC--
Confidence            35677655  35899999999987542     567899999999999999    99998876 689999999999996  


Q ss_pred             ccCCCCCCCCCccccc-ccccccCCCEEEecCCCccccccc-ccccccccccccccccccCCccCCCCCCcccccCcccc
Q 039475          128 ELSETCYCPSLKRLPQ-GRGKLINLRHLIFDKDYLAYMANG-FERLTSLRTLSGFTVARVGGKYSSEACNLEGLRNLNHL  205 (286)
Q Consensus       128 ~LP~~~~~~~l~~LP~-~i~~L~~L~~L~l~~~~~~~lP~~-i~~L~~L~~L~~~~~~~~~~~~~~~~~~~~~l~~L~~L  205 (286)
                              +.++.+|. .|.++++|++|++++|.+..+|.. |+++++|++|++..+...      .......++.+++|
T Consensus       110 --------N~l~~l~~~~f~~L~~L~~L~Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~------~~~~~~~~~~l~~L  175 (635)
T 4g8a_A          110 --------NPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQ------SFKLPEYFSNLTNL  175 (635)
T ss_dssp             --------CCCCEECGGGGTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCC------CCCCCGGGGGCTTC
T ss_pred             --------CcCCCCCHHHhcCCCCCCEEECCCCcCCCCChhhhhcCcccCeeccccCccc------cCCCchhhccchhh
Confidence                    67999986 579999999999999999999875 999999999999877654      12334456667777


Q ss_pred             cceeEEccc
Q 039475          206 RQFLRICGL  214 (286)
Q Consensus       206 ~~~L~i~~l  214 (286)
                      + .|.+.+.
T Consensus       176 ~-~L~L~~N  183 (635)
T 4g8a_A          176 E-HLDLSSN  183 (635)
T ss_dssp             C-EEECCSS
T ss_pred             h-hhcccCc
Confidence            7 7777643

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=99.46  E-value=3.4e-13  Score=112.65  Aligned_cols=132  Identities=15%  Similarity=0.144  Sum_probs=112.3

Q ss_pred             ccCCceEEEeecCCCCCCc--hhhhcCCCCcEEEeccCCCCCCCcCccchhhhcCCCCCcEEEeecccCCccCcccCc-c
Q 039475           35 CQEKLRHLTLMLGLPTKFP--VSIFDAKKLRSLSLFYDSKGQSAASPVLQGLFDQLTCLRALKIEELWYGDQTIEIPK-G  111 (286)
Q Consensus        35 ~~~~~r~ls~~~~~~~~~~--~~~~~l~~Lr~L~l~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~i~~lP~-~  111 (286)
                      ++..++.+.+..+.+..++  ..+..+++|++|++.+|.....     .+..|.+++.|++|+|++    |.+..+|. .
T Consensus        30 ~~~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i-----~~~~~~~l~~L~~L~Ls~----N~l~~~~~~~  100 (220)
T 2v70_A           30 IPQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDI-----EEGAFEGASGVNEILLTS----NRLENVQHKM  100 (220)
T ss_dssp             CCTTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEE-----CTTTTTTCTTCCEEECCS----SCCCCCCGGG
T ss_pred             CCCCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEE-----CHHHhCCCCCCCEEECCC----CccCccCHhH
Confidence            4566889999999886653  3478999999999999986542     566899999999999999    99998876 4


Q ss_pred             ccCCCCCcEEecccccccCCCCCCCCCccc-ccccccccCCCEEEecCCCcccc-ccccccccccccccccccccc
Q 039475          112 LENLIHLRYLKLSAVEELSETCYCPSLKRL-PQGRGKLINLRHLIFDKDYLAYM-ANGFERLTSLRTLSGFTVARV  185 (286)
Q Consensus       112 i~~L~~Lr~L~L~~~~~LP~~~~~~~l~~L-P~~i~~L~~L~~L~l~~~~~~~l-P~~i~~L~~L~~L~~~~~~~~  185 (286)
                      ++.+.+|++|+|++          +.+..+ |..+..+++|++|++++|.+..+ |..|+.+++|++|++..+...
T Consensus       101 ~~~l~~L~~L~Ls~----------N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~  166 (220)
T 2v70_A          101 FKGLESLKTLMLRS----------NRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFN  166 (220)
T ss_dssp             GTTCSSCCEEECTT----------SCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCEE
T ss_pred             hcCCcCCCEEECCC----------CcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCCc
Confidence            89999999999996          778877 67789999999999999999988 566999999999998877544

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=99.46  E-value=1e-13  Score=130.82  Aligned_cols=171  Identities=16%  Similarity=0.139  Sum_probs=101.8

Q ss_pred             hcCCCCcEEEeccCCCCCCCcCccchhhhcCCCCCcEEEeecccCCccCcccCccccCCCCCcEEeccc--ccccCC-C-
Q 039475           57 FDAKKLRSLSLFYDSKGQSAASPVLQGLFDQLTCLRALKIEELWYGDQTIEIPKGLENLIHLRYLKLSA--VEELSE-T-  132 (286)
Q Consensus        57 ~~l~~Lr~L~l~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~i~~lP~~i~~L~~Lr~L~L~~--~~~LP~-~-  132 (286)
                      ..+++|+.|+++++.......   .+..+..++.|++|++++    +.+..+|..++.+.+|++|++++  +..++. . 
T Consensus       344 ~~~~~L~~L~l~~n~l~~~~~---~~~~~~~~~~L~~L~l~~----n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~  416 (570)
T 2z63_A          344 VDLPSLEFLDLSRNGLSFKGC---CSQSDFGTTSLKYLDLSF----NGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSV  416 (570)
T ss_dssp             CBCTTCCEEECCSSCCBEEEE---EEHHHHTCSCCCEEECCS----CSEEEEEEEEETCTTCCEEECTTSEEESCTTSCT
T ss_pred             ccCCCCCEEeCcCCccCcccc---ccccccccCccCEEECCC----CccccccccccccCCCCEEEccCCccccccchhh
Confidence            345666666666665432111   255667778888888888    77777777777888888888876  443322 1 


Q ss_pred             -CCCCCCc-----------ccccccccccCCCEEEecCCCcc--cccccccccccccccccccccccCCccCCCCCCccc
Q 039475          133 -CYCPSLK-----------RLPQGRGKLINLRHLIFDKDYLA--YMANGFERLTSLRTLSGFTVARVGGKYSSEACNLEG  198 (286)
Q Consensus       133 -~~~~~l~-----------~LP~~i~~L~~L~~L~l~~~~~~--~lP~~i~~L~~L~~L~~~~~~~~~~~~~~~~~~~~~  198 (286)
                       ..+.+++           ..|..++++++|++|++++|.+.  .+|..++.+++|++|++..+...       ......
T Consensus       417 ~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~-------~~~~~~  489 (570)
T 2z63_A          417 FLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLE-------QLSPTA  489 (570)
T ss_dssp             TTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCC-------EECTTT
T ss_pred             hhcCCCCCEEeCcCCcccccchhhhhcCCcCcEEECcCCcCccccchhhhhcccCCCEEECCCCccc-------cCChhh
Confidence             2222222           23556667777777777777665  46666777777777776665433       223344


Q ss_pred             ccCcccccceeEEcccCCcccchhhhhhcCCCCCCceEEEEeCCCCC
Q 039475          199 LRNLNHLRQFLRICGLGNLQMRLKINAHLEKKKNLVHLTLDFDKGED  245 (286)
Q Consensus       199 l~~L~~L~~~L~i~~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~  245 (286)
                      +..+++|+ .|.+.+.. +  ....+..+..+++|+.|+++.|....
T Consensus       490 ~~~l~~L~-~L~l~~n~-l--~~~~~~~~~~l~~L~~L~l~~N~~~~  532 (570)
T 2z63_A          490 FNSLSSLQ-VLNMASNQ-L--KSVPDGIFDRLTSLQKIWLHTNPWDC  532 (570)
T ss_dssp             TTTCTTCC-EEECCSSC-C--SCCCTTTTTTCTTCCEEECCSSCBCC
T ss_pred             hhcccCCC-EEeCCCCc-C--CCCCHHHhhcccCCcEEEecCCcccC
Confidence            55566666 66665431 1  22223446667777777777776653

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=99.45  E-value=3.3e-13  Score=113.79  Aligned_cols=173  Identities=11%  Similarity=0.106  Sum_probs=132.0

Q ss_pred             cCCceEEEeecCC-CCCCch-hhhcCCCCcEEEecc-CCCCCCCcCccchhhhcCCCCCcEEEeecccCCccCcccCccc
Q 039475           36 QEKLRHLTLMLGL-PTKFPV-SIFDAKKLRSLSLFY-DSKGQSAASPVLQGLFDQLTCLRALKIEELWYGDQTIEIPKGL  112 (286)
Q Consensus        36 ~~~~r~ls~~~~~-~~~~~~-~~~~l~~Lr~L~l~~-~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~i~~lP~~i  112 (286)
                      ..+++.+.+..+. ...+++ .+..+++|++|++.+ +.....     .+..|.+++.|++|++++    +.+..+|. +
T Consensus        54 l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i-----~~~~f~~l~~L~~L~l~~----n~l~~lp~-~  123 (239)
T 2xwt_C           54 LPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYI-----DPDALKELPLLKFLGIFN----TGLKMFPD-L  123 (239)
T ss_dssp             CTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEE-----CTTSEECCTTCCEEEEEE----ECCCSCCC-C
T ss_pred             CCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEc-----CHHHhCCCCCCCEEeCCC----CCCccccc-c
Confidence            4678999999986 666654 688999999999998 765432     456789999999999999    99999997 8


Q ss_pred             cCCCCCc---EEecccccccCCCCCCCCCcccccc-cccccCCC-EEEecCCCccccccccccccccccccccccc-ccC
Q 039475          113 ENLIHLR---YLKLSAVEELSETCYCPSLKRLPQG-RGKLINLR-HLIFDKDYLAYMANGFERLTSLRTLSGFTVA-RVG  186 (286)
Q Consensus       113 ~~L~~Lr---~L~L~~~~~LP~~~~~~~l~~LP~~-i~~L~~L~-~L~l~~~~~~~lP~~i~~L~~L~~L~~~~~~-~~~  186 (286)
                      +.+.+|+   +|++++         +..+..+|.. +.++++|+ +|++++|.+..+|......++|++|++..+. .. 
T Consensus       124 ~~l~~L~~L~~L~l~~---------N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~~i~~~~~~~~~L~~L~L~~n~~l~-  193 (239)
T 2xwt_C          124 TKVYSTDIFFILEITD---------NPYMTSIPVNAFQGLCNETLTLKLYNNGFTSVQGYAFNGTKLDAVYLNKNKYLT-  193 (239)
T ss_dssp             TTCCBCCSEEEEEEES---------CTTCCEECTTTTTTTBSSEEEEECCSCCCCEECTTTTTTCEEEEEECTTCTTCC-
T ss_pred             ccccccccccEEECCC---------CcchhhcCcccccchhcceeEEEcCCCCCcccCHhhcCCCCCCEEEcCCCCCcc-
Confidence            8888888   999995         3278888864 89999999 9999999999999875555899999988773 32 


Q ss_pred             CccCCCCCCcccccCc-ccccceeEEcccCCcccchhhhhhcCCCCCCceEEEEeC
Q 039475          187 GKYSSEACNLEGLRNL-NHLRQFLRICGLGNLQMRLKINAHLEKKKNLVHLTLDFD  241 (286)
Q Consensus       187 ~~~~~~~~~~~~l~~L-~~L~~~L~i~~l~~~~~~~~~~~~l~~l~~L~~L~L~~~  241 (286)
                            ......+..+ ++|+ .|.+.+.. +.   .++..  .+++|+.|+++.+
T Consensus       194 ------~i~~~~~~~l~~~L~-~L~l~~N~-l~---~l~~~--~~~~L~~L~l~~~  236 (239)
T 2xwt_C          194 ------VIDKDAFGGVYSGPS-LLDVSQTS-VT---ALPSK--GLEHLKELIARNT  236 (239)
T ss_dssp             ------EECTTTTTTCSBCCS-EEECTTCC-CC---CCCCT--TCTTCSEEECTTC
T ss_pred             ------cCCHHHhhccccCCc-EEECCCCc-cc---cCChh--HhccCceeeccCc
Confidence                  2233445666 7777 78776531 11   12222  5778888887644

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=99.44  E-value=8.2e-13  Score=108.95  Aligned_cols=166  Identities=24%  Similarity=0.330  Sum_probs=126.3

Q ss_pred             eEEEeecCCCCCCchhhhcCCCCcEEEeccCCCCCCCcCccchhhhcCCCCCcEEEeecccCCccCcccCcc-ccCCCCC
Q 039475           40 RHLTLMLGLPTKFPVSIFDAKKLRSLSLFYDSKGQSAASPVLQGLFDQLTCLRALKIEELWYGDQTIEIPKG-LENLIHL  118 (286)
Q Consensus        40 r~ls~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~i~~lP~~-i~~L~~L  118 (286)
                      +.+....+....+|..+  .++|+.|++.++.....     .+..|..++.|++|++++    +.+..+|.. ++.+.+|
T Consensus        10 ~~v~c~~~~l~~~p~~~--~~~l~~L~l~~n~l~~~-----~~~~~~~l~~L~~L~l~~----n~l~~~~~~~~~~l~~L   78 (208)
T 2o6s_A           10 TTVECYSQGRTSVPTGI--PAQTTYLDLETNSLKSL-----PNGVFDELTSLTQLYLGG----NKLQSLPNGVFNKLTSL   78 (208)
T ss_dssp             TEEECCSSCCSSCCSCC--CTTCSEEECCSSCCCCC-----CTTTTTTCTTCSEEECCS----SCCCCCCTTTTTTCTTC
T ss_pred             CEEEecCCCccCCCCCC--CCCCcEEEcCCCccCcC-----ChhhhcccccCcEEECCC----CccCccChhhcCCCCCc
Confidence            44555555556666554  56999999999986532     566789999999999999    999988875 5899999


Q ss_pred             cEEecccccccCCCCCCCCCcccccc-cccccCCCEEEecCCCccccccc-ccccccccccccccccccCCccCCCCCCc
Q 039475          119 RYLKLSAVEELSETCYCPSLKRLPQG-RGKLINLRHLIFDKDYLAYMANG-FERLTSLRTLSGFTVARVGGKYSSEACNL  196 (286)
Q Consensus       119 r~L~L~~~~~LP~~~~~~~l~~LP~~-i~~L~~L~~L~l~~~~~~~lP~~-i~~L~~L~~L~~~~~~~~~~~~~~~~~~~  196 (286)
                      ++|++++          +.+..+|.. ++++++|++|++++|.+..+|.. ++++++|++|++..+...       ....
T Consensus        79 ~~L~Ls~----------n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~-------~~~~  141 (208)
T 2o6s_A           79 TYLNLST----------NQLQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLK-------SVPD  141 (208)
T ss_dssp             CEEECCS----------SCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCS-------CCCT
T ss_pred             CEEECCC----------CcCCccCHhHhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCccc-------eeCH
Confidence            9999996          678888865 68999999999999999988876 899999999999877544       2233


Q ss_pred             ccccCcccccceeEEcccCCcccchhhhhhcCCCCCCceEEEEeCCCC
Q 039475          197 EGLRNLNHLRQFLRICGLGNLQMRLKINAHLEKKKNLVHLTLDFDKGE  244 (286)
Q Consensus       197 ~~l~~L~~L~~~L~i~~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~  244 (286)
                      ..+..+++|+ .|.+.+....          +.+++|+.|+++.|+..
T Consensus       142 ~~~~~l~~L~-~L~l~~N~~~----------~~~~~l~~L~~~~n~~~  178 (208)
T 2o6s_A          142 GVFDRLTSLQ-YIWLHDNPWD----------CTCPGIRYLSEWINKHS  178 (208)
T ss_dssp             TTTTTCTTCC-EEECCSCCBC----------CCTTTTHHHHHHHHHCT
T ss_pred             HHhccCCCcc-EEEecCCCee----------cCCCCHHHHHHHHHhCC
Confidence            3466777777 7888754221          23456666766666555

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=99.44  E-value=4.9e-13  Score=123.71  Aligned_cols=149  Identities=19%  Similarity=0.161  Sum_probs=114.7

Q ss_pred             chhhhcCCCCcEEEeccCCCCCCCcCccchhhhcCCCCCcEEEeecccCCccCcccCccccCCCCCcEEecccccccCCC
Q 039475           53 PVSIFDAKKLRSLSLFYDSKGQSAASPVLQGLFDQLTCLRALKIEELWYGDQTIEIPKGLENLIHLRYLKLSAVEELSET  132 (286)
Q Consensus        53 ~~~~~~l~~Lr~L~l~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~i~~lP~~i~~L~~Lr~L~L~~~~~LP~~  132 (286)
                      +..+.++++|++|+++++....      +| .|..++.|++|++++    +.+..+|  ++.+++|++|++++       
T Consensus        35 ~~~~~~l~~L~~L~Ls~n~l~~------~~-~l~~l~~L~~L~Ls~----n~l~~~~--~~~l~~L~~L~Ls~-------   94 (457)
T 3bz5_A           35 TISEEQLATLTSLDCHNSSITD------MT-GIEKLTGLTKLICTS----NNITTLD--LSQNTNLTYLACDS-------   94 (457)
T ss_dssp             EEEHHHHTTCCEEECCSSCCCC------CT-TGGGCTTCSEEECCS----SCCSCCC--CTTCTTCSEEECCS-------
T ss_pred             ccChhHcCCCCEEEccCCCccc------Ch-hhcccCCCCEEEccC----CcCCeEc--cccCCCCCEEECcC-------
Confidence            4567889999999999997654      45 578999999999999    9999886  99999999999996       


Q ss_pred             CCCCCCcccccccccccCCCEEEecCCCcccccccccccccccccccccccccCCccCCCCCCcccccCcccccceeEEc
Q 039475          133 CYCPSLKRLPQGRGKLINLRHLIFDKDYLAYMANGFERLTSLRTLSGFTVARVGGKYSSEACNLEGLRNLNHLRQFLRIC  212 (286)
Q Consensus       133 ~~~~~l~~LP~~i~~L~~L~~L~l~~~~~~~lP~~i~~L~~L~~L~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~~L~i~  212 (286)
                         +.++.+|  ++++++|++|++++|.+..+|  ++++++|++|++..+...       +.   .++++++|+ .|.+.
T Consensus        95 ---N~l~~~~--~~~l~~L~~L~L~~N~l~~l~--~~~l~~L~~L~l~~N~l~-------~l---~l~~l~~L~-~L~l~  156 (457)
T 3bz5_A           95 ---NKLTNLD--VTPLTKLTYLNCDTNKLTKLD--VSQNPLLTYLNCARNTLT-------EI---DVSHNTQLT-ELDCH  156 (457)
T ss_dssp             ---SCCSCCC--CTTCTTCCEEECCSSCCSCCC--CTTCTTCCEEECTTSCCS-------CC---CCTTCTTCC-EEECT
T ss_pred             ---CCCceee--cCCCCcCCEEECCCCcCCeec--CCCCCcCCEEECCCCccc-------ee---ccccCCcCC-EEECC
Confidence               6688886  899999999999999999886  899999999998877654       21   255566666 66665


Q ss_pred             ccCCcccchhhhhhcCCCCCCceEEEEeCCCC
Q 039475          213 GLGNLQMRLKINAHLEKKKNLVHLTLDFDKGE  244 (286)
Q Consensus       213 ~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~  244 (286)
                      +......   +  .+..+++|+.|++++|+.+
T Consensus       157 ~n~~~~~---~--~~~~l~~L~~L~ls~n~l~  183 (457)
T 3bz5_A          157 LNKKITK---L--DVTPQTQLTTLDCSFNKIT  183 (457)
T ss_dssp             TCSCCCC---C--CCTTCTTCCEEECCSSCCC
T ss_pred             CCCcccc---c--ccccCCcCCEEECCCCccc
Confidence            4322211   1  2455566666666666554

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=99.44  E-value=2.6e-13  Score=118.95  Aligned_cols=180  Identities=17%  Similarity=0.015  Sum_probs=115.3

Q ss_pred             CceEEEeecCCCC-CCchhh--hcCCCCcEEEeccCCCCCCCcCccch-hhhcCCCCCcEEEeecccCCccCcccC-ccc
Q 039475           38 KLRHLTLMLGLPT-KFPVSI--FDAKKLRSLSLFYDSKGQSAASPVLQ-GLFDQLTCLRALKIEELWYGDQTIEIP-KGL  112 (286)
Q Consensus        38 ~~r~ls~~~~~~~-~~~~~~--~~l~~Lr~L~l~~~~~~~~~~~~~~~-~~~~~l~~Lr~L~L~~~~~~~~i~~lP-~~i  112 (286)
                      +++++.+..+... ..|..+  ..+++|++|++++|.......  .++ ..+..++.|++|++++    |.+..+| ..+
T Consensus        92 ~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~--~~~~~~~~~~~~L~~L~Ls~----n~l~~~~~~~~  165 (310)
T 4glp_A           92 RLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRS--WLAELQQWLKPGLKVLSIAQ----AHSPAFSCEQV  165 (310)
T ss_dssp             CCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTS--SHHHHHTTBCSCCCEEEEEC----CSSCCCCTTSC
T ss_pred             ceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhh--hhHHHHhhhccCCCEEEeeC----CCcchhhHHHh
Confidence            3777777777663 445555  778888888888887553210  011 3345788888888888    8877665 577


Q ss_pred             cCCCCCcEEecccccccCCCCCCCCCcc---ccc--ccccccCCCEEEecCCCccccccc----cccccccccccccccc
Q 039475          113 ENLIHLRYLKLSAVEELSETCYCPSLKR---LPQ--GRGKLINLRHLIFDKDYLAYMANG----FERLTSLRTLSGFTVA  183 (286)
Q Consensus       113 ~~L~~Lr~L~L~~~~~LP~~~~~~~l~~---LP~--~i~~L~~L~~L~l~~~~~~~lP~~----i~~L~~L~~L~~~~~~  183 (286)
                      +.+++|++|++++          +.+..   +|.  .++++++|++|++++|.+..+|..    ++.+++|++|++..+.
T Consensus       166 ~~l~~L~~L~Ls~----------N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~~l~~L~~L~Ls~N~  235 (310)
T 4glp_A          166 RAFPALTSLDLSD----------NPGLGERGLMAALCPHKFPAIQNLALRNTGMETPTGVCAALAAAGVQPHSLDLSHNS  235 (310)
T ss_dssp             CCCTTCCEEECCS----------CTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHHHHHHHHHHHTCCCSSEECTTSC
T ss_pred             ccCCCCCEEECCC----------CCCccchhhhHHHhhhcCCCCCEEECCCCCCCchHHHHHHHHhcCCCCCEEECCCCC
Confidence            8888888888885          43432   432  346788888888888888766543    5677888888887776


Q ss_pred             ccCCccCCCCCCcccccCcccccceeEEcccCCcccchhhhhhcCCCCCCceEEEEeCCCC
Q 039475          184 RVGGKYSSEACNLEGLRNLNHLRQFLRICGLGNLQMRLKINAHLEKKKNLVHLTLDFDKGE  244 (286)
Q Consensus       184 ~~~~~~~~~~~~~~~l~~L~~L~~~L~i~~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~  244 (286)
                      ...    ..+..+..+..+++|+ .|.+.+..-    ..++..+.  ++|+.|+|++|+.+
T Consensus       236 l~~----~~p~~~~~~~~~~~L~-~L~Ls~N~l----~~lp~~~~--~~L~~L~Ls~N~l~  285 (310)
T 4glp_A          236 LRA----TVNPSAPRCMWSSALN-SLNLSFAGL----EQVPKGLP--AKLRVLDLSSNRLN  285 (310)
T ss_dssp             CCC----CCCSCCSSCCCCTTCC-CEECCSSCC----CSCCSCCC--SCCSCEECCSCCCC
T ss_pred             CCc----cchhhHHhccCcCcCC-EEECCCCCC----Cchhhhhc--CCCCEEECCCCcCC
Confidence            541    0012233333335666 677664311    12233332  68888888888876

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=99.44  E-value=5.7e-13  Score=118.87  Aligned_cols=90  Identities=16%  Similarity=0.215  Sum_probs=61.1

Q ss_pred             ccCCceEEEeecCCCCCCch-hhhcCCCCcEEEeccCCCCCCCcCccchhhhcCCCCCcE-EEeecccCCccCcccC-cc
Q 039475           35 CQEKLRHLTLMLGLPTKFPV-SIFDAKKLRSLSLFYDSKGQSAASPVLQGLFDQLTCLRA-LKIEELWYGDQTIEIP-KG  111 (286)
Q Consensus        35 ~~~~~r~ls~~~~~~~~~~~-~~~~l~~Lr~L~l~~~~~~~~~~~~~~~~~~~~l~~Lr~-L~L~~~~~~~~i~~lP-~~  111 (286)
                      ++.++++|.+..+.+..+|+ .|.++++|++|++++|.....    +.+..|.+++.++. +.+.+    +.+..+| ..
T Consensus        28 l~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~----i~~~~f~~L~~l~~~l~~~~----N~l~~l~~~~   99 (350)
T 4ay9_X           28 LPRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEV----IEADVFSNLPKLHEIRIEKA----NNLLYINPEA   99 (350)
T ss_dssp             CCTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCE----ECTTSBCSCTTCCEEEEEEE----TTCCEECTTS
T ss_pred             cCCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCc----cChhHhhcchhhhhhhcccC----CcccccCchh
Confidence            56789999999999988875 578999999999999875321    02345666665543 45555    5666653 35


Q ss_pred             ccCCCCCcEEeccc--ccccCCC
Q 039475          112 LENLIHLRYLKLSA--VEELSET  132 (286)
Q Consensus       112 i~~L~~Lr~L~L~~--~~~LP~~  132 (286)
                      ++.+++|++|++++  +..+|..
T Consensus       100 f~~l~~L~~L~l~~n~l~~~~~~  122 (350)
T 4ay9_X          100 FQNLPNLQYLLISNTGIKHLPDV  122 (350)
T ss_dssp             BCCCTTCCEEEEEEECCSSCCCC
T ss_pred             hhhccccccccccccccccCCch
Confidence            56677777777766  5555543

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=99.43  E-value=5.4e-13  Score=132.21  Aligned_cols=174  Identities=20%  Similarity=0.153  Sum_probs=132.6

Q ss_pred             eEEEeecCCCCCCchhhhcCCCCcEEEeccCCCCCCCcCccchhhhcCCCCCcEEEeecccCCcc-Cccc-CccccCCCC
Q 039475           40 RHLTLMLGLPTKFPVSIFDAKKLRSLSLFYDSKGQSAASPVLQGLFDQLTCLRALKIEELWYGDQ-TIEI-PKGLENLIH  117 (286)
Q Consensus        40 r~ls~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~-i~~l-P~~i~~L~~  117 (286)
                      +.+....+....+|.   -.++|++|++++|.....     .+..|.++++|++|+|++    +. +..+ |..|+++++
T Consensus         7 ~~~dcs~~~L~~vP~---lp~~l~~LdLs~N~i~~i-----~~~~~~~l~~L~~LdLs~----n~~~~~i~~~~f~~L~~   74 (844)
T 3j0a_A            7 RIAFYRFCNLTQVPQ---VLNTTERLLLSFNYIRTV-----TASSFPFLEQLQLLELGS----QYTPLTIDKEAFRNLPN   74 (844)
T ss_dssp             EEEEESCCCSSCCCS---SCTTCCEEEEESCCCCEE-----CSSSCSSCCSCSEEEECT----TCCCCEECTTTTSSCTT
T ss_pred             eEEEccCCCCCCCCC---CCCCcCEEECCCCcCCcc-----ChhHCcccccCeEEeCCC----CCCccccCHHHhcCCCC
Confidence            344444555666776   468999999999986542     677899999999999999    84 5566 778999999


Q ss_pred             CcEEecccccccCCCCCCCCCccc-ccccccccCCCEEEecCCCccc-cccc--ccccccccccccccccccCCccCCCC
Q 039475          118 LRYLKLSAVEELSETCYCPSLKRL-PQGRGKLINLRHLIFDKDYLAY-MANG--FERLTSLRTLSGFTVARVGGKYSSEA  193 (286)
Q Consensus       118 Lr~L~L~~~~~LP~~~~~~~l~~L-P~~i~~L~~L~~L~l~~~~~~~-lP~~--i~~L~~L~~L~~~~~~~~~~~~~~~~  193 (286)
                      |++|+|++          +.+..+ |..|+++++|++|++++|.+.. +|..  ++++++|++|++..+....      .
T Consensus        75 L~~L~Ls~----------N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~------~  138 (844)
T 3j0a_A           75 LRILDLGS----------SKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRS------L  138 (844)
T ss_dssp             CCEEECTT----------CCCCEECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCC------C
T ss_pred             CCEEECCC----------CcCcccCHhHccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccc------c
Confidence            99999996          667766 8899999999999999999885 5655  9999999999998876541      2


Q ss_pred             CCcccccCcccccceeEEcccCCcccchhhhhhcCCC--CCCceEEEEeCCCCC
Q 039475          194 CNLEGLRNLNHLRQFLRICGLGNLQMRLKINAHLEKK--KNLVHLTLDFDKGED  245 (286)
Q Consensus       194 ~~~~~l~~L~~L~~~L~i~~l~~~~~~~~~~~~l~~l--~~L~~L~L~~~~~~~  245 (286)
                      .....++++++|+ .|.+.+..-   ....+..+..+  ++|+.|+++.|....
T Consensus       139 ~~~~~~~~L~~L~-~L~Ls~N~i---~~~~~~~l~~l~~~~L~~L~L~~n~l~~  188 (844)
T 3j0a_A          139 YLHPSFGKLNSLK-SIDFSSNQI---FLVCEHELEPLQGKTLSFFSLAANSLYS  188 (844)
T ss_dssp             CCCGGGGTCSSCC-EEEEESSCC---CCCCSGGGHHHHHCSSCCCEECCSBSCC
T ss_pred             ccchhHhhCCCCC-EEECCCCcC---CeeCHHHcccccCCccceEECCCCcccc
Confidence            2234678888888 888875422   11122333333  789999999997764

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=99.43  E-value=5.7e-14  Score=124.08  Aligned_cols=187  Identities=19%  Similarity=0.148  Sum_probs=114.2

Q ss_pred             CCceEEEeecCCCCC--CchhhhcCCCCcEEEeccCCCCCCCcCccchhhhcCCCCCcEEEeecccCCc-cCc--ccCcc
Q 039475           37 EKLRHLTLMLGLPTK--FPVSIFDAKKLRSLSLFYDSKGQSAASPVLQGLFDQLTCLRALKIEELWYGD-QTI--EIPKG  111 (286)
Q Consensus        37 ~~~r~ls~~~~~~~~--~~~~~~~l~~Lr~L~l~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~-~i~--~lP~~  111 (286)
                      .+++++.+..+....  ++..+..+++|++|++.++.....     .+..+..+++|++|++++    + .+.  .+|..
T Consensus        93 ~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~-----~~~~l~~~~~L~~L~L~~----~~~l~~~~l~~~  163 (336)
T 2ast_B           93 FRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDP-----IVNTLAKNSNLVRLNLSG----CSGFSEFALQTL  163 (336)
T ss_dssp             BCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHH-----HHHHHTTCTTCSEEECTT----CBSCCHHHHHHH
T ss_pred             CCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCcccCHH-----HHHHHhcCCCCCEEECCC----CCCCCHHHHHHH
Confidence            456666666655421  445556666666666666643221     444555566666666666    5 344  24545


Q ss_pred             ccCCCCCcEEeccc---ccc--cCCC-C------------CCC-CC--cccccccccccCCCEEEecCCC-cc-cccccc
Q 039475          112 LENLIHLRYLKLSA---VEE--LSET-C------------YCP-SL--KRLPQGRGKLINLRHLIFDKDY-LA-YMANGF  168 (286)
Q Consensus       112 i~~L~~Lr~L~L~~---~~~--LP~~-~------------~~~-~l--~~LP~~i~~L~~L~~L~l~~~~-~~-~lP~~i  168 (286)
                      ++++++|++|++++   +..  +|.. .            +|. .+  ..+|..+.++++|++|++++|. +. ..+..+
T Consensus       164 ~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l  243 (336)
T 2ast_B          164 LSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEF  243 (336)
T ss_dssp             HHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGG
T ss_pred             HhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHH
Confidence            55555666665543   111  1111 1            232 23  4578888899999999999998 54 567789


Q ss_pred             cccccccccccccccccCCccCCCCCCcccccCcccccceeEEcccCCcccchhhhhhcCCCCCCceEEEEeCCCCC
Q 039475          169 ERLTSLRTLSGFTVARVGGKYSSEACNLEGLRNLNHLRQFLRICGLGNLQMRLKINAHLEKKKNLVHLTLDFDKGED  245 (286)
Q Consensus       169 ~~L~~L~~L~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~~L~i~~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~  245 (286)
                      +++++|++|++..+...      ....+..++++++|+ .|.+.++  +.. +.+ ..+.  .++..|++++|..+.
T Consensus       244 ~~l~~L~~L~l~~~~~~------~~~~~~~l~~~~~L~-~L~l~~~--i~~-~~~-~~l~--~~l~~L~l~~n~l~~  307 (336)
T 2ast_B          244 FQLNYLQHLSLSRCYDI------IPETLLELGEIPTLK-TLQVFGI--VPD-GTL-QLLK--EALPHLQINCSHFTT  307 (336)
T ss_dssp             GGCTTCCEEECTTCTTC------CGGGGGGGGGCTTCC-EEECTTS--SCT-TCH-HHHH--HHSTTSEESCCCSCC
T ss_pred             hCCCCCCEeeCCCCCCC------CHHHHHHHhcCCCCC-EEeccCc--cCH-HHH-HHHH--hhCcceEEecccCcc
Confidence            99999999999887522      244455677788888 8888865  322 111 1121  246667799998874

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=99.42  E-value=2e-13  Score=120.17  Aligned_cols=118  Identities=17%  Similarity=0.122  Sum_probs=94.9

Q ss_pred             hhcCCCCcEEEeccCCCCCCCcCccchhhhcCCCCCcEEEeecccCCccCcccCccccCCCCCcEEeccc--ccccCCC-
Q 039475           56 IFDAKKLRSLSLFYDSKGQSAASPVLQGLFDQLTCLRALKIEELWYGDQTIEIPKGLENLIHLRYLKLSA--VEELSET-  132 (286)
Q Consensus        56 ~~~l~~Lr~L~l~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~i~~lP~~i~~L~~Lr~L~L~~--~~~LP~~-  132 (286)
                      +..+++|+.|+++++.....     .|..|.++++|++|++++    |.+..+++ ++.+.+|++|++++  +..+|.. 
T Consensus        30 ~~~~~~L~~L~L~~n~l~~~-----~~~~~~~l~~L~~L~Ls~----n~l~~~~~-~~~l~~L~~L~Ls~n~l~~l~~~~   99 (317)
T 3o53_A           30 RQSAWNVKELDLSGNPLSQI-----SAADLAPFTKLELLNLSS----NVLYETLD-LESLSTLRTLDLNNNYVQELLVGP   99 (317)
T ss_dssp             HTTGGGCSEEECTTSCCCCC-----CHHHHTTCTTCCEEECTT----SCCEEEEE-ETTCTTCCEEECCSSEEEEEEECT
T ss_pred             hccCCCCCEEECcCCccCcC-----CHHHhhCCCcCCEEECCC----CcCCcchh-hhhcCCCCEEECcCCccccccCCC
Confidence            45567999999999986543     678899999999999999    99887775 99999999999998  6666543 


Q ss_pred             C------CCCCCcccccccccccCCCEEEecCCCcccccc-ccccccccccccccccccc
Q 039475          133 C------YCPSLKRLPQGRGKLINLRHLIFDKDYLAYMAN-GFERLTSLRTLSGFTVARV  185 (286)
Q Consensus       133 ~------~~~~l~~LP~~i~~L~~L~~L~l~~~~~~~lP~-~i~~L~~L~~L~~~~~~~~  185 (286)
                      .      ..+.+..+|..  .+++|++|++++|.+..+++ .++.+++|++|++..+...
T Consensus       100 ~L~~L~l~~n~l~~~~~~--~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~  157 (317)
T 3o53_A          100 SIETLHAANNNISRVSCS--RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEID  157 (317)
T ss_dssp             TCCEEECCSSCCSEEEEC--CCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCC
T ss_pred             CcCEEECCCCccCCcCcc--ccCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCC
Confidence            2      33446666643  47889999999999998765 5999999999998876544

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=99.42  E-value=5e-13  Score=127.68  Aligned_cols=150  Identities=18%  Similarity=0.169  Sum_probs=123.6

Q ss_pred             hhcCCCCcEEEeccCCCCCCCcCccchhhhcCCCCCcEEEeecccCCccCcccCccccCCCCCcEEecccccccCCCCCC
Q 039475           56 IFDAKKLRSLSLFYDSKGQSAASPVLQGLFDQLTCLRALKIEELWYGDQTIEIPKGLENLIHLRYLKLSAVEELSETCYC  135 (286)
Q Consensus        56 ~~~l~~Lr~L~l~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~i~~lP~~i~~L~~Lr~L~L~~~~~LP~~~~~  135 (286)
                      +..+++|+.|.+.++....      ++ .|..+++|++|+|++    |.+..+|. ++.+.+|++|+|++          
T Consensus        39 ~~~L~~L~~L~l~~n~i~~------l~-~l~~l~~L~~L~Ls~----N~l~~~~~-l~~l~~L~~L~Ls~----------   96 (605)
T 1m9s_A           39 QNELNSIDQIIANNSDIKS------VQ-GIQYLPNVTKLFLNG----NKLTDIKP-LTNLKNLGWLFLDE----------   96 (605)
T ss_dssp             HHHHTTCCCCBCTTCCCCC------CT-TGGGCTTCCEEECTT----SCCCCCGG-GGGCTTCCEEECCS----------
T ss_pred             hhcCCCCCEEECcCCCCCC------Ch-HHccCCCCCEEEeeC----CCCCCChh-hccCCCCCEEECcC----------
Confidence            5678999999999987643      44 478999999999999    99998886 99999999999996          


Q ss_pred             CCCcccccccccccCCCEEEecCCCcccccccccccccccccccccccccCCccCCCCCCcccccCcccccceeEEcccC
Q 039475          136 PSLKRLPQGRGKLINLRHLIFDKDYLAYMANGFERLTSLRTLSGFTVARVGGKYSSEACNLEGLRNLNHLRQFLRICGLG  215 (286)
Q Consensus       136 ~~l~~LP~~i~~L~~L~~L~l~~~~~~~lP~~i~~L~~L~~L~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~~L~i~~l~  215 (286)
                      +.+..+| .++.+++|++|++++|.+..+| .++.|++|+.|++..+...         .+..+..+++|+ .|.+.+..
T Consensus        97 N~l~~l~-~l~~l~~L~~L~Ls~N~l~~l~-~l~~l~~L~~L~Ls~N~l~---------~l~~l~~l~~L~-~L~Ls~N~  164 (605)
T 1m9s_A           97 NKIKDLS-SLKDLKKLKSLSLEHNGISDIN-GLVHLPQLESLYLGNNKIT---------DITVLSRLTKLD-TLSLEDNQ  164 (605)
T ss_dssp             SCCCCCT-TSTTCTTCCEEECTTSCCCCCG-GGGGCTTCSEEECCSSCCC---------CCGGGGSCTTCS-EEECCSSC
T ss_pred             CCCCCCh-hhccCCCCCEEEecCCCCCCCc-cccCCCccCEEECCCCccC---------CchhhcccCCCC-EEECcCCc
Confidence            6688877 7999999999999999998874 6999999999999887644         236677888888 78887542


Q ss_pred             CcccchhhhhhcCCCCCCceEEEEeCCCC
Q 039475          216 NLQMRLKINAHLEKKKNLVHLTLDFDKGE  244 (286)
Q Consensus       216 ~~~~~~~~~~~l~~l~~L~~L~L~~~~~~  244 (286)
                      -   .... . +..+++|+.|+|+.|...
T Consensus       165 l---~~~~-~-l~~l~~L~~L~Ls~N~i~  188 (605)
T 1m9s_A          165 I---SDIV-P-LAGLTKLQNLYLSKNHIS  188 (605)
T ss_dssp             C---CCCG-G-GTTCTTCCEEECCSSCCC
T ss_pred             C---CCch-h-hccCCCCCEEECcCCCCC
Confidence            1   1222 2 889999999999999886

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=99.42  E-value=2.4e-12  Score=110.44  Aligned_cols=142  Identities=17%  Similarity=0.157  Sum_probs=113.3

Q ss_pred             cCCceEEEeecCCCCCCchhhhcCCCCcEEEeccCCCCCCCcCccchhhhcCCCCCcEEEeecccCCccCcccCccccCC
Q 039475           36 QEKLRHLTLMLGLPTKFPVSIFDAKKLRSLSLFYDSKGQSAASPVLQGLFDQLTCLRALKIEELWYGDQTIEIPKGLENL  115 (286)
Q Consensus        36 ~~~~r~ls~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~i~~lP~~i~~L  115 (286)
                      ...++.+.+..+.+..++ .+..+++|+.|++++|....      ++. +.+++.|++|++++    |.+..+|....  
T Consensus        40 l~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~L~~N~i~~------~~~-l~~l~~L~~L~L~~----N~l~~l~~~~~--  105 (263)
T 1xeu_A           40 LSGVQNFNGDNSNIQSLA-GMQFFTNLKELHLSHNQISD------LSP-LKDLTKLEELSVNR----NRLKNLNGIPS--  105 (263)
T ss_dssp             HTTCSEEECTTSCCCCCT-TGGGCTTCCEEECCSSCCCC------CGG-GTTCSSCCEEECCS----SCCSCCTTCCC--
T ss_pred             cCcCcEEECcCCCcccch-HHhhCCCCCEEECCCCccCC------Chh-hccCCCCCEEECCC----CccCCcCcccc--
Confidence            467899999998887776 68889999999999998654      444 88999999999999    99998886444  


Q ss_pred             CCCcEEecccccccCCCCCCCCCcccccccccccCCCEEEecCCCcccccccccccccccccccccccccCCccCCCCCC
Q 039475          116 IHLRYLKLSAVEELSETCYCPSLKRLPQGRGKLINLRHLIFDKDYLAYMANGFERLTSLRTLSGFTVARVGGKYSSEACN  195 (286)
Q Consensus       116 ~~Lr~L~L~~~~~LP~~~~~~~l~~LP~~i~~L~~L~~L~l~~~~~~~lP~~i~~L~~L~~L~~~~~~~~~~~~~~~~~~  195 (286)
                      .+|++|++++          +.++.+| .++++++|++|++++|.+..+| .++.+++|++|++..+....      .  
T Consensus       106 ~~L~~L~L~~----------N~l~~~~-~l~~l~~L~~L~Ls~N~i~~~~-~l~~l~~L~~L~L~~N~i~~------~--  165 (263)
T 1xeu_A          106 ACLSRLFLDN----------NELRDTD-SLIHLKNLEILSIRNNKLKSIV-MLGFLSKLEVLDLHGNEITN------T--  165 (263)
T ss_dssp             SSCCEEECCS----------SCCSBSG-GGTTCTTCCEEECTTSCCCBCG-GGGGCTTCCEEECTTSCCCB------C--
T ss_pred             CcccEEEccC----------CccCCCh-hhcCcccccEEECCCCcCCCCh-HHccCCCCCEEECCCCcCcc------h--
Confidence            8999999986          6677776 5888999999999999888886 68888999999888776541      1  


Q ss_pred             cccccCcccccceeEEcc
Q 039475          196 LEGLRNLNHLRQFLRICG  213 (286)
Q Consensus       196 ~~~l~~L~~L~~~L~i~~  213 (286)
                       ..+..+++|+ .|.+.+
T Consensus       166 -~~l~~l~~L~-~L~l~~  181 (263)
T 1xeu_A          166 -GGLTRLKKVN-WIDLTG  181 (263)
T ss_dssp             -TTSTTCCCCC-EEEEEE
T ss_pred             -HHhccCCCCC-EEeCCC
Confidence             4556666666 666654

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=99.40  E-value=7.8e-13  Score=106.35  Aligned_cols=125  Identities=19%  Similarity=0.139  Sum_probs=71.8

Q ss_pred             CCceEEEeecCCCCCCchhhhcCCCCcEEEeccCCCCCCCcCccchhhhcCCCCCcEEEeecccCCccCcccCccc-cCC
Q 039475           37 EKLRHLTLMLGLPTKFPVSIFDAKKLRSLSLFYDSKGQSAASPVLQGLFDQLTCLRALKIEELWYGDQTIEIPKGL-ENL  115 (286)
Q Consensus        37 ~~~r~ls~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~i~~lP~~i-~~L  115 (286)
                      .+++.+.+..+.+..++......++|+.|++++|....      + ..|..++.|++|++++    |.+..+|..+ +.+
T Consensus        19 ~~L~~L~l~~n~l~~i~~~~~~~~~L~~L~Ls~N~l~~------~-~~l~~l~~L~~L~Ls~----N~l~~~~~~~~~~l   87 (176)
T 1a9n_A           19 VRDRELDLRGYKIPVIENLGATLDQFDAIDFSDNEIRK------L-DGFPLLRRLKTLLVNN----NRICRIGEGLDQAL   87 (176)
T ss_dssp             TSCEEEECTTSCCCSCCCGGGGTTCCSEEECCSSCCCE------E-CCCCCCSSCCEEECCS----SCCCEECSCHHHHC
T ss_pred             CCceEEEeeCCCCchhHHhhhcCCCCCEEECCCCCCCc------c-cccccCCCCCEEECCC----CcccccCcchhhcC
Confidence            44566666666555443322222366666666665432      2 3355666666666666    6666666544 666


Q ss_pred             CCCcEEecccccccCCCCCCCCCccccc--ccccccCCCEEEecCCCccccccc----ccccccccccccccc
Q 039475          116 IHLRYLKLSAVEELSETCYCPSLKRLPQ--GRGKLINLRHLIFDKDYLAYMANG----FERLTSLRTLSGFTV  182 (286)
Q Consensus       116 ~~Lr~L~L~~~~~LP~~~~~~~l~~LP~--~i~~L~~L~~L~l~~~~~~~lP~~----i~~L~~L~~L~~~~~  182 (286)
                      ++|++|++++          +.+..+|.  .++.+++|++|++++|.+..+|..    ++.+++|++|++..+
T Consensus        88 ~~L~~L~L~~----------N~i~~~~~~~~l~~l~~L~~L~l~~N~i~~~~~~~~~~~~~l~~L~~Ld~~~n  150 (176)
T 1a9n_A           88 PDLTELILTN----------NSLVELGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLDFQKV  150 (176)
T ss_dssp             TTCCEEECCS----------CCCCCGGGGGGGGGCTTCCEEECCSSGGGGSTTHHHHHHHHCTTCSEETTEEC
T ss_pred             CCCCEEECCC----------CcCCcchhhHhhhcCCCCCEEEecCCCCCCcHhHHHHHHHHCCccceeCCCcC
Confidence            6666666664          45556665  566666666666666666666553    566666666655444

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=99.40  E-value=7.5e-13  Score=116.17  Aligned_cols=176  Identities=14%  Similarity=0.073  Sum_probs=133.6

Q ss_pred             ccCCceEEEeecCCCCCCchhhhcC-----CCCcEEEeccCCCCCCCcCccchhhhcCCCCCcEEEeecccCCccCcc--
Q 039475           35 CQEKLRHLTLMLGLPTKFPVSIFDA-----KKLRSLSLFYDSKGQSAASPVLQGLFDQLTCLRALKIEELWYGDQTIE--  107 (286)
Q Consensus        35 ~~~~~r~ls~~~~~~~~~~~~~~~l-----~~Lr~L~l~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~i~~--  107 (286)
                      ...+.+++.+..+.+...|..+..+     ++|++|++++|.....     .+..|.+++.|++|++++    |.+..  
T Consensus       119 ~l~~L~~L~Ls~N~l~~~~~~~~~l~~~~~~~L~~L~L~~N~l~~~-----~~~~~~~l~~L~~L~Ls~----N~l~~~~  189 (312)
T 1wwl_A          119 TGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAHSLNF-----SCEQVRVFPALSTLDLSD----NPELGER  189 (312)
T ss_dssp             CSCCCSEEEEESCBCSSSSSHHHHHHTTCCTTCCEEEEESCSCCCC-----CTTTCCCCSSCCEEECCS----CTTCHHH
T ss_pred             cCCCccEEEccCCCCcchhHHHHHHHHhhcCCCcEEEeeCCCCccc-----hHHHhccCCCCCEEECCC----CCcCcch
Confidence            3567999999999987777777777     9999999999987543     667899999999999999    88543  


Q ss_pred             -cCccc--cCCCCCcEEecccccccCCCCCCCCCccc---ccc-cccccCCCEEEecCCCccccc--ccccccccccccc
Q 039475          108 -IPKGL--ENLIHLRYLKLSAVEELSETCYCPSLKRL---PQG-RGKLINLRHLIFDKDYLAYMA--NGFERLTSLRTLS  178 (286)
Q Consensus       108 -lP~~i--~~L~~Lr~L~L~~~~~LP~~~~~~~l~~L---P~~-i~~L~~L~~L~l~~~~~~~lP--~~i~~L~~L~~L~  178 (286)
                       +|..+  +++.+|++|++++          +.+..+   |.. +.++++|++|++++|.+...+  ..+..+++|++|+
T Consensus       190 ~~~~~~~~~~l~~L~~L~L~~----------N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~  259 (312)
T 1wwl_A          190 GLISALCPLKFPTLQVLALRN----------AGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLN  259 (312)
T ss_dssp             HHHHHSCTTSCTTCCEEECTT----------SCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEE
T ss_pred             HHHHHHHhccCCCCCEEECCC----------CcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhhcCCCCEEE
Confidence             46666  8999999999996          667744   433 367899999999999998755  3477789999999


Q ss_pred             cccccccCCccCCCCCCcccccCcccccceeEEcccCCcccchhhhhhcCCCCCCceEEEEeCCCCC
Q 039475          179 GFTVARVGGKYSSEACNLEGLRNLNHLRQFLRICGLGNLQMRLKINAHLEKKKNLVHLTLDFDKGED  245 (286)
Q Consensus       179 ~~~~~~~~~~~~~~~~~~~~l~~L~~L~~~L~i~~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~  245 (286)
                      +..+...        .....+.  ++|+ .|.+.+..   -. ..+. +..+++|+.|+++.|..++
T Consensus       260 Ls~N~l~--------~ip~~~~--~~L~-~L~Ls~N~---l~-~~p~-~~~l~~L~~L~L~~N~l~~  310 (312)
T 1wwl_A          260 LSFTGLK--------QVPKGLP--AKLS-VLDLSYNR---LD-RNPS-PDELPQVGNLSLKGNPFLD  310 (312)
T ss_dssp             CTTSCCS--------SCCSSCC--SEEE-EEECCSSC---CC-SCCC-TTTSCEEEEEECTTCTTTC
T ss_pred             CCCCccC--------hhhhhcc--CCce-EEECCCCC---CC-CChh-HhhCCCCCEEeccCCCCCC
Confidence            8877543        1222232  5555 66666431   11 1233 8889999999999998763

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=99.40  E-value=4.7e-13  Score=130.57  Aligned_cols=110  Identities=23%  Similarity=0.185  Sum_probs=61.0

Q ss_pred             chhhhcCCCCCcEEEeecccCCccCcccCccccCCCCCcEEecccccccCCCCCCCCCcccccccccccCCCEEEecCCC
Q 039475           81 LQGLFDQLTCLRALKIEELWYGDQTIEIPKGLENLIHLRYLKLSAVEELSETCYCPSLKRLPQGRGKLINLRHLIFDKDY  160 (286)
Q Consensus        81 ~~~~~~~l~~Lr~L~L~~~~~~~~i~~lP~~i~~L~~Lr~L~L~~~~~LP~~~~~~~l~~LP~~i~~L~~L~~L~l~~~~  160 (286)
                      .+..|..+..|++|+|++    +.+..+|..++++.+|++|+|++          +.+..+|..|++|++|++|++++|.
T Consensus       216 ~~~~~~~l~~L~~L~Ls~----n~l~~l~~~~~~l~~L~~L~Ls~----------N~l~~lp~~~~~l~~L~~L~Ls~N~  281 (727)
T 4b8c_D          216 PKDSKYDDQLWHALDLSN----LQIFNISANIFKYDFLTRLYLNG----------NSLTELPAEIKNLSNLRVLDLSHNR  281 (727)
T ss_dssp             ------CCCCCCEEECTT----SCCSCCCGGGGGCCSCSCCBCTT----------SCCSCCCGGGGGGTTCCEEECTTSC
T ss_pred             ChhhhccCCCCcEEECCC----CCCCCCChhhcCCCCCCEEEeeC----------CcCcccChhhhCCCCCCEEeCcCCc
Confidence            445556666666666666    66666666666666666666654          4555666666666666666666666


Q ss_pred             cccccccccccccccccccccccccCCccCCCCCCcccccCcccccceeEEcc
Q 039475          161 LAYMANGFERLTSLRTLSGFTVARVGGKYSSEACNLEGLRNLNHLRQFLRICG  213 (286)
Q Consensus       161 ~~~lP~~i~~L~~L~~L~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~~L~i~~  213 (286)
                      +..+|..|++|++|++|++..+...        .....+++|++|+ .|.+.+
T Consensus       282 l~~lp~~~~~l~~L~~L~L~~N~l~--------~lp~~~~~l~~L~-~L~L~~  325 (727)
T 4b8c_D          282 LTSLPAELGSCFQLKYFYFFDNMVT--------TLPWEFGNLCNLQ-FLGVEG  325 (727)
T ss_dssp             CSSCCSSGGGGTTCSEEECCSSCCC--------CCCSSTTSCTTCC-CEECTT
T ss_pred             CCccChhhcCCCCCCEEECCCCCCC--------ccChhhhcCCCcc-EEeCCC
Confidence            6666666666666666666555322        1222345555555 455543

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=99.39  E-value=2.7e-13  Score=105.86  Aligned_cols=109  Identities=23%  Similarity=0.281  Sum_probs=89.5

Q ss_pred             cCCCCcEEEeccCCCCCCCcCccchhhhcCCCCCcEEEeecccCCccCcccCccccCCCCCcEEecccccccCCCCCCCC
Q 039475           58 DAKKLRSLSLFYDSKGQSAASPVLQGLFDQLTCLRALKIEELWYGDQTIEIPKGLENLIHLRYLKLSAVEELSETCYCPS  137 (286)
Q Consensus        58 ~l~~Lr~L~l~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~i~~lP~~i~~L~~Lr~L~L~~~~~LP~~~~~~~  137 (286)
                      ..++|+.|++.++......    +|..+..+++|++|++++    |.+..+ ..++++++|++|++++          +.
T Consensus        15 ~~~~l~~L~l~~n~l~~~~----~~~~~~~l~~L~~L~l~~----n~l~~~-~~~~~l~~L~~L~Ls~----------n~   75 (149)
T 2je0_A           15 TPSDVKELVLDNSRSNEGK----LEGLTDEFEELEFLSTIN----VGLTSI-ANLPKLNKLKKLELSD----------NR   75 (149)
T ss_dssp             CGGGCSEEECTTCBCBTTB----CCSCCTTCTTCCEEECTT----SCCCCC-TTCCCCTTCCEEECCS----------SC
T ss_pred             CCccCeEEEccCCcCChhH----HHHHHhhcCCCcEEECcC----CCCCCc-hhhhcCCCCCEEECCC----------Cc
Confidence            3478899999998765111    677788999999999999    888887 7889999999999985          66


Q ss_pred             Ccc-cccccccccCCCEEEecCCCccccc--cccccccccccccccccccc
Q 039475          138 LKR-LPQGRGKLINLRHLIFDKDYLAYMA--NGFERLTSLRTLSGFTVARV  185 (286)
Q Consensus       138 l~~-LP~~i~~L~~L~~L~l~~~~~~~lP--~~i~~L~~L~~L~~~~~~~~  185 (286)
                      +.. +|..++++++|++|++++|.+..+|  ..++.+++|++|++..+...
T Consensus        76 i~~~~~~~~~~l~~L~~L~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~  126 (149)
T 2je0_A           76 VSGGLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVT  126 (149)
T ss_dssp             CCSCTHHHHHHCTTCCEEECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGG
T ss_pred             ccchHHHHhhhCCCCCEEECCCCcCCChHHHHHHhhCCCCCEEeCcCCccc
Confidence            776 7888888999999999999988865  67899999999988777544

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=99.39  E-value=6.9e-13  Score=105.67  Aligned_cols=107  Identities=24%  Similarity=0.302  Sum_probs=77.3

Q ss_pred             cCCCCcEEEeccCCCCCCCcCccchhhhcCCCCCcEEEeecccCCccCcccCccccCCCCCcEEecccccccCCCCCCCC
Q 039475           58 DAKKLRSLSLFYDSKGQSAASPVLQGLFDQLTCLRALKIEELWYGDQTIEIPKGLENLIHLRYLKLSAVEELSETCYCPS  137 (286)
Q Consensus        58 ~l~~Lr~L~l~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~i~~lP~~i~~L~~Lr~L~L~~~~~LP~~~~~~~  137 (286)
                      ..++|+.|++.++......    +|..+..+++|++|++++    |.+..+ ..++.+++|++|++++          +.
T Consensus        22 ~~~~L~~L~l~~n~l~~~~----i~~~~~~l~~L~~L~l~~----n~l~~~-~~~~~l~~L~~L~Ls~----------N~   82 (168)
T 2ell_A           22 TPAAVRELVLDNCKSNDGK----IEGLTAEFVNLEFLSLIN----VGLISV-SNLPKLPKLKKLELSE----------NR   82 (168)
T ss_dssp             CTTSCSEEECCSCBCBTTB----CSSCCGGGGGCCEEEEES----SCCCCC-SSCCCCSSCCEEEEES----------CC
T ss_pred             CcccCCEEECCCCCCChhh----HHHHHHhCCCCCEEeCcC----CCCCCh-hhhccCCCCCEEECcC----------Cc
Confidence            3477888888887654111    666677788888888888    777776 6778888888888875          55


Q ss_pred             Ccc-cccccccccCCCEEEecCCCccccc--cccccccccccccccccc
Q 039475          138 LKR-LPQGRGKLINLRHLIFDKDYLAYMA--NGFERLTSLRTLSGFTVA  183 (286)
Q Consensus       138 l~~-LP~~i~~L~~L~~L~l~~~~~~~lP--~~i~~L~~L~~L~~~~~~  183 (286)
                      +.. +|..++++++|++|++++|.+..+|  ..++.+++|++|++..+.
T Consensus        83 l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~  131 (168)
T 2ell_A           83 IFGGLDMLAEKLPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNCE  131 (168)
T ss_dssp             CCSCCCHHHHHCTTCCEEECBSSSCCSSGGGGGGSSCSCCCEEECCSSG
T ss_pred             CchHHHHHHhhCCCCCEEeccCCccCcchhHHHHhcCCCCCEEEeeCCc
Confidence            665 6666677888888888888877765  457777777777765543

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=99.39  E-value=1.1e-12  Score=117.66  Aligned_cols=125  Identities=15%  Similarity=0.129  Sum_probs=53.4

Q ss_pred             CceEEEeecCCCCCCchh-hh-cCCCCcEEEeccCCCCCCCcCccchhhhcCCCCCcEEEeecccCCccCcccCc-cccC
Q 039475           38 KLRHLTLMLGLPTKFPVS-IF-DAKKLRSLSLFYDSKGQSAASPVLQGLFDQLTCLRALKIEELWYGDQTIEIPK-GLEN  114 (286)
Q Consensus        38 ~~r~ls~~~~~~~~~~~~-~~-~l~~Lr~L~l~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~i~~lP~-~i~~  114 (286)
                      .++.|.+..+.+..++.. +. .+++|+.|++++|.....     .+..|.+++.|++|+|++    |.+..+|. .++.
T Consensus        40 ~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i-----~~~~~~~l~~L~~L~Ls~----N~l~~~~~~~~~~  110 (361)
T 2xot_A           40 YTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFI-----SSEAFVPVPNLRYLDLSS----NHLHTLDEFLFSD  110 (361)
T ss_dssp             TCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEE-----CTTTTTTCTTCCEEECCS----SCCCEECTTTTTT
T ss_pred             CCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCcc-----ChhhccCCCCCCEEECCC----CcCCcCCHHHhCC
Confidence            344444444444333222 22 444445554444443221     223344444455555544    44444433 3444


Q ss_pred             CCCCcEEecccccccCCCCCCCCCccc-ccccccccCCCEEEecCCCcccccccc----ccccccccccccc
Q 039475          115 LIHLRYLKLSAVEELSETCYCPSLKRL-PQGRGKLINLRHLIFDKDYLAYMANGF----ERLTSLRTLSGFT  181 (286)
Q Consensus       115 L~~Lr~L~L~~~~~LP~~~~~~~l~~L-P~~i~~L~~L~~L~l~~~~~~~lP~~i----~~L~~L~~L~~~~  181 (286)
                      +.+|++|+|++          +.+..+ |..|.++++|++|++++|.+..+|.++    +.+++|++|++..
T Consensus       111 l~~L~~L~L~~----------N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~  172 (361)
T 2xot_A          111 LQALEVLLLYN----------NHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSS  172 (361)
T ss_dssp             CTTCCEEECCS----------SCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCS
T ss_pred             CcCCCEEECCC----------CcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCC
Confidence            44455555443          333333 233444444444444444444444432    3344444444443

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=99.37  E-value=2.3e-13  Score=122.88  Aligned_cols=83  Identities=12%  Similarity=0.072  Sum_probs=45.1

Q ss_pred             CCceEEEeecCCCCC-----CchhhhcCCCCcEEEeccCCCCCCCcCccchhh-------hcCCCCCcEEEeecccCCcc
Q 039475           37 EKLRHLTLMLGLPTK-----FPVSIFDAKKLRSLSLFYDSKGQSAASPVLQGL-------FDQLTCLRALKIEELWYGDQ  104 (286)
Q Consensus        37 ~~~r~ls~~~~~~~~-----~~~~~~~l~~Lr~L~l~~~~~~~~~~~~~~~~~-------~~~l~~Lr~L~L~~~~~~~~  104 (286)
                      ..+++|.+..+.+..     ++..+..+++|++|.++++......  ..+|..       |..+++|++|+|++    |.
T Consensus        32 ~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~--~~~~~~~~~l~~~l~~~~~L~~L~Ls~----n~  105 (386)
T 2ca6_A           32 DSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVK--DEIPEALRLLLQALLKCPKLHTVRLSD----NA  105 (386)
T ss_dssp             SCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCG--GGSHHHHHHHHHHHTTCTTCCEEECCS----CC
T ss_pred             CCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccc--cchhHHHHHHHHHHhhCCcccEEECCC----Cc
Confidence            346666666655422     2223445667777777665322100  002322       35666777777776    66


Q ss_pred             Ccc-----cCccccCCCCCcEEeccc
Q 039475          105 TIE-----IPKGLENLIHLRYLKLSA  125 (286)
Q Consensus       105 i~~-----lP~~i~~L~~Lr~L~L~~  125 (286)
                      +..     +|..++++++|++|+|++
T Consensus       106 l~~~~~~~l~~~l~~~~~L~~L~L~~  131 (386)
T 2ca6_A          106 FGPTAQEPLIDFLSKHTPLEHLYLHN  131 (386)
T ss_dssp             CCTTTHHHHHHHHHHCTTCCEEECCS
T ss_pred             CCHHHHHHHHHHHHhCCCCCEEECcC
Confidence            553     566666666777777664

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=99.36  E-value=4.4e-12  Score=103.70  Aligned_cols=123  Identities=17%  Similarity=0.188  Sum_probs=99.5

Q ss_pred             eEEEeecCCCCCCchhhhcCCCCcEEEeccCCCCCCCcCccchhhhcCCCCCcEEEeecccCCccCcccCc-cccCCCCC
Q 039475           40 RHLTLMLGLPTKFPVSIFDAKKLRSLSLFYDSKGQSAASPVLQGLFDQLTCLRALKIEELWYGDQTIEIPK-GLENLIHL  118 (286)
Q Consensus        40 r~ls~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~i~~lP~-~i~~L~~L  118 (286)
                      +.+....+....+|..+  .++|++|++.+|....      +|..|.++++|++|+|++    |.+..++. .|+++.+|
T Consensus        13 ~~l~~~~~~l~~ip~~~--~~~l~~L~L~~n~i~~------ip~~~~~l~~L~~L~Ls~----N~i~~i~~~~f~~l~~L   80 (193)
T 2wfh_A           13 TVVRCSNKGLKVLPKGI--PRDVTELYLDGNQFTL------VPKELSNYKHLTLIDLSN----NRISTLSNQSFSNMTQL   80 (193)
T ss_dssp             TEEECTTSCCSSCCSCC--CTTCCEEECCSSCCCS------CCGGGGGCTTCCEEECCS----SCCCCCCTTTTTTCTTC
T ss_pred             CEEEcCCCCCCcCCCCC--CCCCCEEECCCCcCch------hHHHhhcccCCCEEECCC----CcCCEeCHhHccCCCCC
Confidence            45666666677777655  3689999999987653      677889999999999999    88887764 68999999


Q ss_pred             cEEecccccccCCCCCCCCCccccc-ccccccCCCEEEecCCCccccccc-ccccccccccccccccc
Q 039475          119 RYLKLSAVEELSETCYCPSLKRLPQ-GRGKLINLRHLIFDKDYLAYMANG-FERLTSLRTLSGFTVAR  184 (286)
Q Consensus       119 r~L~L~~~~~LP~~~~~~~l~~LP~-~i~~L~~L~~L~l~~~~~~~lP~~-i~~L~~L~~L~~~~~~~  184 (286)
                      ++|+|++          +.++.+|. .|+.+++|++|++++|.+..+|.+ |..+++|++|++..+..
T Consensus        81 ~~L~Ls~----------N~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~  138 (193)
T 2wfh_A           81 LTLILSY----------NRLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPL  138 (193)
T ss_dssp             CEEECCS----------SCCCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCE
T ss_pred             CEEECCC----------CccCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCCe
Confidence            9999986          67887765 588899999999999999988876 88899999988776654

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=99.34  E-value=4.1e-12  Score=103.70  Aligned_cols=126  Identities=22%  Similarity=0.250  Sum_probs=99.2

Q ss_pred             ceEEEeecCCCCCCchhhhcCCCCcEEEeccCCCCCCCcCccch-hhhcCCCCCcEEEeecccCCccCccc-CccccCCC
Q 039475           39 LRHLTLMLGLPTKFPVSIFDAKKLRSLSLFYDSKGQSAASPVLQ-GLFDQLTCLRALKIEELWYGDQTIEI-PKGLENLI  116 (286)
Q Consensus        39 ~r~ls~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~~~~~~~~~-~~~~~l~~Lr~L~L~~~~~~~~i~~l-P~~i~~L~  116 (286)
                      .+.+.+..+....+|..+.  .+|++|++.++.....     .+ ..|..++.|++|+|++    +.+..+ |..++++.
T Consensus        10 ~~~l~~s~~~l~~ip~~~~--~~l~~L~l~~n~i~~~-----~~~~~~~~l~~L~~L~Ls~----N~l~~~~~~~~~~l~   78 (192)
T 1w8a_A           10 GTTVDCTGRGLKEIPRDIP--LHTTELLLNDNELGRI-----SSDGLFGRLPHLVKLELKR----NQLTGIEPNAFEGAS   78 (192)
T ss_dssp             TTEEECTTSCCSSCCSCCC--TTCSEEECCSCCCCSB-----CCSCSGGGCTTCCEEECCS----SCCCCBCTTTTTTCT
T ss_pred             CCEEEcCCCCcCcCccCCC--CCCCEEECCCCcCCcc-----CCccccccCCCCCEEECCC----CCCCCcCHhHcCCcc
Confidence            3567777777777777653  3899999999876542     33 2478999999999999    888876 67889999


Q ss_pred             CCcEEecccccccCCCCCCCCCcccccc-cccccCCCEEEecCCCcccc-ccccccccccccccccccccc
Q 039475          117 HLRYLKLSAVEELSETCYCPSLKRLPQG-RGKLINLRHLIFDKDYLAYM-ANGFERLTSLRTLSGFTVARV  185 (286)
Q Consensus       117 ~Lr~L~L~~~~~LP~~~~~~~l~~LP~~-i~~L~~L~~L~l~~~~~~~l-P~~i~~L~~L~~L~~~~~~~~  185 (286)
                      +|++|+|++          +.++.+|.. +.++++|++|++++|.+..+ |..++.+++|++|++..+...
T Consensus        79 ~L~~L~Ls~----------N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~  139 (192)
T 1w8a_A           79 HIQELQLGE----------NKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFN  139 (192)
T ss_dssp             TCCEEECCS----------CCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBC
T ss_pred             cCCEEECCC----------CcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCcc
Confidence            999999986          678877654 78899999999999988866 556889999999988776544

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=99.34  E-value=2.8e-12  Score=112.31  Aligned_cols=175  Identities=14%  Similarity=0.052  Sum_probs=129.6

Q ss_pred             cCCceEEEeecCCCCCC-c----hhhhcCCCCcEEEeccCCCCCCCcCccchhhhcCCCCCcEEEeecccCCccCcc---
Q 039475           36 QEKLRHLTLMLGLPTKF-P----VSIFDAKKLRSLSLFYDSKGQSAASPVLQGLFDQLTCLRALKIEELWYGDQTIE---  107 (286)
Q Consensus        36 ~~~~r~ls~~~~~~~~~-~----~~~~~l~~Lr~L~l~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~i~~---  107 (286)
                      ..+.+.+.+..+.+... +    ..+..+++|++|++++|.....     .+..|..++.|++|+|++    |.+..   
T Consensus       116 ~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~-----~~~~~~~l~~L~~L~Ls~----N~l~~~~~  186 (310)
T 4glp_A          116 GLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPAF-----SCEQVRAFPALTSLDLSD----NPGLGERG  186 (310)
T ss_dssp             CBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCC-----CTTSCCCCTTCCEEECCS----CTTCHHHH
T ss_pred             CCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcchh-----hHHHhccCCCCCEEECCC----CCCccchh
Confidence            56788999998887532 2    3345799999999999987542     667889999999999999    88643   


Q ss_pred             cC--ccccCCCCCcEEecccccccCCCCCCCCCcccccc----cccccCCCEEEecCCCcccc-ccccccc---cccccc
Q 039475          108 IP--KGLENLIHLRYLKLSAVEELSETCYCPSLKRLPQG----RGKLINLRHLIFDKDYLAYM-ANGFERL---TSLRTL  177 (286)
Q Consensus       108 lP--~~i~~L~~Lr~L~L~~~~~LP~~~~~~~l~~LP~~----i~~L~~L~~L~l~~~~~~~l-P~~i~~L---~~L~~L  177 (286)
                      ++  ..++.+++|++|++++          +.++.+|..    ++.+++|++|++++|.+..+ |..++.+   ++|++|
T Consensus       187 ~~~~~~~~~l~~L~~L~Ls~----------N~l~~l~~~~~~l~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L  256 (310)
T 4glp_A          187 LMAALCPHKFPAIQNLALRN----------TGMETPTGVCAALAAAGVQPHSLDLSHNSLRATVNPSAPRCMWSSALNSL  256 (310)
T ss_dssp             HHTTSCTTSSCCCCSCBCCS----------SCCCCHHHHHHHHHHHTCCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCE
T ss_pred             hhHHHhhhcCCCCCEEECCC----------CCCCchHHHHHHHHhcCCCCCEEECCCCCCCccchhhHHhccCcCcCCEE
Confidence            43  3447999999999996          667776653    57889999999999999976 8778877   599999


Q ss_pred             ccccccccCCccCCCCCCcccccCcccccceeEEcccCCcccchhhhhhcCCCCCCceEEEEeCCCCC
Q 039475          178 SGFTVARVGGKYSSEACNLEGLRNLNHLRQFLRICGLGNLQMRLKINAHLEKKKNLVHLTLDFDKGED  245 (286)
Q Consensus       178 ~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~~L~i~~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~  245 (286)
                      ++..+....        ....+.  ++|+ .|.+.+..-   . .+ ..+..+++|+.|+|+.|...+
T Consensus       257 ~Ls~N~l~~--------lp~~~~--~~L~-~L~Ls~N~l---~-~~-~~~~~l~~L~~L~L~~N~l~~  308 (310)
T 4glp_A          257 NLSFAGLEQ--------VPKGLP--AKLR-VLDLSSNRL---N-RA-PQPDELPEVDNLTLDGNPFLV  308 (310)
T ss_dssp             ECCSSCCCS--------CCSCCC--SCCS-CEECCSCCC---C-SC-CCTTSCCCCSCEECSSTTTSC
T ss_pred             ECCCCCCCc--------hhhhhc--CCCC-EEECCCCcC---C-CC-chhhhCCCccEEECcCCCCCC
Confidence            988776441        112222  4566 677764321   1 11 225778999999999998864

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=99.34  E-value=2.5e-12  Score=115.17  Aligned_cols=175  Identities=20%  Similarity=0.144  Sum_probs=129.3

Q ss_pred             ceEEEeecCCCCCCchhhhcCCCCcEEEeccCCCCCCCcCccchhhhc-CCCCCcEEEeecccCCccCcccCc-cccCCC
Q 039475           39 LRHLTLMLGLPTKFPVSIFDAKKLRSLSLFYDSKGQSAASPVLQGLFD-QLTCLRALKIEELWYGDQTIEIPK-GLENLI  116 (286)
Q Consensus        39 ~r~ls~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~~~~~~~~~~~~~-~l~~Lr~L~L~~~~~~~~i~~lP~-~i~~L~  116 (286)
                      .+.+....+....+|..+  .+.++.|++++|.....     .+..|. ++.+|++|+|++    |.+..+|. .++++.
T Consensus        20 ~~~l~c~~~~l~~iP~~~--~~~l~~L~Ls~N~l~~l-----~~~~~~~~l~~L~~L~L~~----N~i~~i~~~~~~~l~   88 (361)
T 2xot_A           20 SNILSCSKQQLPNVPQSL--PSYTALLDLSHNNLSRL-----RAEWTPTRLTNLHSLLLSH----NHLNFISSEAFVPVP   88 (361)
T ss_dssp             TTEEECCSSCCSSCCSSC--CTTCSEEECCSSCCCEE-----CTTSSSSCCTTCCEEECCS----SCCCEECTTTTTTCT
T ss_pred             CCEEEeCCCCcCccCccC--CCCCCEEECCCCCCCcc-----ChhhhhhcccccCEEECCC----CcCCccChhhccCCC
Confidence            356777777777788765  35689999999986542     556676 899999999999    99998875 699999


Q ss_pred             CCcEEecccccccCCCCCCCCCccccc-ccccccCCCEEEecCCCccccc-ccccccccccccccccccccCCccCCCCC
Q 039475          117 HLRYLKLSAVEELSETCYCPSLKRLPQ-GRGKLINLRHLIFDKDYLAYMA-NGFERLTSLRTLSGFTVARVGGKYSSEAC  194 (286)
Q Consensus       117 ~Lr~L~L~~~~~LP~~~~~~~l~~LP~-~i~~L~~L~~L~l~~~~~~~lP-~~i~~L~~L~~L~~~~~~~~~~~~~~~~~  194 (286)
                      +|++|+|++          +.++.+|. .|.++++|++|++++|.+..++ ..|+.+++|++|++..+...       ..
T Consensus        89 ~L~~L~Ls~----------N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~-------~l  151 (361)
T 2xot_A           89 NLRYLDLSS----------NHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQIS-------RF  151 (361)
T ss_dssp             TCCEEECCS----------SCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCC-------SC
T ss_pred             CCCEEECCC----------CcCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCC-------ee
Confidence            999999996          77888876 5799999999999999999875 45999999999998877654       22


Q ss_pred             Ccccc---cCcccccceeEEcccCCcccchhhhhhcCCCCC--CceEEEEeCCCCC
Q 039475          195 NLEGL---RNLNHLRQFLRICGLGNLQMRLKINAHLEKKKN--LVHLTLDFDKGED  245 (286)
Q Consensus       195 ~~~~l---~~L~~L~~~L~i~~l~~~~~~~~~~~~l~~l~~--L~~L~L~~~~~~~  245 (286)
                      ....+   ..+++|+ .|.+.+..- ..  .-...+..+..  ++.|+|+.|....
T Consensus       152 ~~~~~~~~~~l~~L~-~L~L~~N~l-~~--l~~~~~~~l~~~~l~~l~l~~N~~~C  203 (361)
T 2xot_A          152 PVELIKDGNKLPKLM-LLDLSSNKL-KK--LPLTDLQKLPAWVKNGLYLHNNPLEC  203 (361)
T ss_dssp             CGGGTC----CTTCC-EEECCSSCC-CC--CCHHHHHHSCHHHHTTEECCSSCEEC
T ss_pred             CHHHhcCcccCCcCC-EEECCCCCC-Cc--cCHHHhhhccHhhcceEEecCCCccC
Confidence            22222   5677777 777764321 11  11233444544  4789999887653

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=99.33  E-value=2.1e-12  Score=115.69  Aligned_cols=217  Identities=16%  Similarity=0.114  Sum_probs=114.9

Q ss_pred             cCCceEEEeecCCCCCCc-----hhhhcCC-CCcEEEeccCCCCCCCcCccchhhhcCC-----CCCcEEEeecccCCcc
Q 039475           36 QEKLRHLTLMLGLPTKFP-----VSIFDAK-KLRSLSLFYDSKGQSAASPVLQGLFDQL-----TCLRALKIEELWYGDQ  104 (286)
Q Consensus        36 ~~~~r~ls~~~~~~~~~~-----~~~~~l~-~Lr~L~l~~~~~~~~~~~~~~~~~~~~l-----~~Lr~L~L~~~~~~~~  104 (286)
                      +.+++++.+..+.+...+     ..+..++ +|++|++++|.....     .+..|..+     +.|++|+|++    |.
T Consensus        21 ~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~-----~~~~l~~~l~~~~~~L~~L~Ls~----n~   91 (362)
T 3goz_A           21 PHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFK-----NSDELVQILAAIPANVTSLNLSG----NF   91 (362)
T ss_dssp             CTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGS-----CHHHHHHHHHTSCTTCCEEECCS----SC
T ss_pred             CCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHH-----HHHHHHHHHhccCCCccEEECcC----Cc
Confidence            455777777777664443     4556676 788888877765432     23333332     7777777777    77


Q ss_pred             CcccCc-c----ccCC-CCCcEEeccc--ccccCC------------C-C----CCCCCc-----cccccccccc-CCCE
Q 039475          105 TIEIPK-G----LENL-IHLRYLKLSA--VEELSE------------T-C----YCPSLK-----RLPQGRGKLI-NLRH  153 (286)
Q Consensus       105 i~~lP~-~----i~~L-~~Lr~L~L~~--~~~LP~------------~-~----~~~~l~-----~LP~~i~~L~-~L~~  153 (286)
                      +...+. .    +..+ .+|++|++++  ++..+.            . .    ..+.+.     .++..+..+. +|++
T Consensus        92 l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~  171 (362)
T 3goz_A           92 LSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPANVNS  171 (362)
T ss_dssp             GGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCE
T ss_pred             CChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHHHhcCCccccE
Confidence            664433 2    3444 6777777776  222221            1 0    012222     3344444454 6777


Q ss_pred             EEecCCCcccccc-ccc----cc-ccccccccccccccCCccCCCCCCcc----cccC-cccccceeEEcccCCccc-ch
Q 039475          154 LIFDKDYLAYMAN-GFE----RL-TSLRTLSGFTVARVGGKYSSEACNLE----GLRN-LNHLRQFLRICGLGNLQM-RL  221 (286)
Q Consensus       154 L~l~~~~~~~lP~-~i~----~L-~~L~~L~~~~~~~~~~~~~~~~~~~~----~l~~-L~~L~~~L~i~~l~~~~~-~~  221 (286)
                      |++++|.+...+. .+.    .+ ++|++|++..+...       .....    .+.. .++|+ .|.+.+..-... ..
T Consensus       172 L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~-------~~~~~~l~~~l~~~~~~L~-~L~Ls~N~l~~~~~~  243 (362)
T 3goz_A          172 LNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLG-------LKSYAELAYIFSSIPNHVV-SLNLCLNCLHGPSLE  243 (362)
T ss_dssp             EECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGG-------GSCHHHHHHHHHHSCTTCC-EEECCSSCCCCCCHH
T ss_pred             eeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCC-------hhHHHHHHHHHhcCCCCce-EEECcCCCCCcHHHH
Confidence            7776666654332 232    33 46666666655433       11111    2222 12455 566654322111 23


Q ss_pred             hhhhhcCCCCCCceEEEEeCCCCCCccchhhccccccchhhHHHHHHHHHhcCCCCCcccCCC
Q 039475          222 KINAHLEKKKNLVHLTLDFDKGEDEEDEDYEEAPNLMNEENEAKQEAICEALQAPPNIVIRNN  284 (286)
Q Consensus       222 ~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~L~~l~~  284 (286)
                      .+...+..+++|+.|++++|....-               .......+.+.+...++|+.||.
T Consensus       244 ~l~~~~~~l~~L~~L~L~~n~l~~i---------------~~~~~~~l~~~~~~l~~L~~LdL  291 (362)
T 3goz_A          244 NLKLLKDSLKHLQTVYLDYDIVKNM---------------SKEQCKALGAAFPNIQKIILVDK  291 (362)
T ss_dssp             HHHHTTTTTTTCSEEEEEHHHHTTC---------------CHHHHHHHHTTSTTCCEEEEECT
T ss_pred             HHHHHHhcCCCccEEEeccCCcccc---------------CHHHHHHHHHHhccCCceEEEec
Confidence            4445556677777777777763310               11235566666777777777763

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=99.33  E-value=5.7e-13  Score=120.21  Aligned_cols=186  Identities=18%  Similarity=0.146  Sum_probs=100.8

Q ss_pred             CCCchhhhcCCCCcEEEeccCCCCCCCcCccchhhhcCCCCCcEEEeecccCCccCc----ccCccc-------cCCCCC
Q 039475           50 TKFPVSIFDAKKLRSLSLFYDSKGQSAASPVLQGLFDQLTCLRALKIEELWYGDQTI----EIPKGL-------ENLIHL  118 (286)
Q Consensus        50 ~~~~~~~~~l~~Lr~L~l~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~i~----~lP~~i-------~~L~~L  118 (286)
                      ..++..+..+++|++|+++++...... ...++..+..++.|++|+|++    +.+.    .+|..+       ..+++|
T Consensus        22 ~~l~~~l~~~~~L~~L~L~~n~i~~~~-~~~l~~~l~~~~~L~~L~Ls~----~~~~~l~~~~~~~~~~l~~~l~~~~~L   96 (386)
T 2ca6_A           22 KSVFAVLLEDDSVKEIVLSGNTIGTEA-ARWLSENIASKKDLEIAEFSD----IFTGRVKDEIPEALRLLLQALLKCPKL   96 (386)
T ss_dssp             HTTSHHHHHCSCCCEEECTTSEECHHH-HHHHHHTTTTCTTCCEEECCS----CCTTSCGGGSHHHHHHHHHHHTTCTTC
T ss_pred             HHHHHHHhcCCCccEEECCCCCCCHHH-HHHHHHHHHhCCCccEEeCcc----cccCccccchhHHHHHHHHHHhhCCcc
Confidence            456778888999999999998754321 011344577899999999999    6544    345444       799999


Q ss_pred             cEEeccc--ccc-----cCCC-CCCCCCcc---------------cccccccc---------cCCCEEEecCCCcc--cc
Q 039475          119 RYLKLSA--VEE-----LSET-CYCPSLKR---------------LPQGRGKL---------INLRHLIFDKDYLA--YM  164 (286)
Q Consensus       119 r~L~L~~--~~~-----LP~~-~~~~~l~~---------------LP~~i~~L---------~~L~~L~l~~~~~~--~l  164 (286)
                      ++|+|++  +..     +|.. ..|..++.               ++..+..+         ++|++|++++|.+.  .+
T Consensus        97 ~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~  176 (386)
T 2ca6_A           97 HTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSM  176 (386)
T ss_dssp             CEEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGH
T ss_pred             cEEECCCCcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHH
Confidence            9999997  222     3332 22222221               12222222         55555555555543  23


Q ss_pred             c---ccccccccccccccccccccCCccCCCCCCcc-cccCcccccceeEEcccCCccc-chhhhhhcCCCCCCceEEEE
Q 039475          165 A---NGFERLTSLRTLSGFTVARVGGKYSSEACNLE-GLRNLNHLRQFLRICGLGNLQM-RLKINAHLEKKKNLVHLTLD  239 (286)
Q Consensus       165 P---~~i~~L~~L~~L~~~~~~~~~~~~~~~~~~~~-~l~~L~~L~~~L~i~~l~~~~~-~~~~~~~l~~l~~L~~L~L~  239 (286)
                      |   ..++.+++|++|.+..+......   ....+. .+..+++|+ .|.+.+..-... ...++..+..+++|++|+|+
T Consensus       177 ~~l~~~l~~~~~L~~L~L~~n~l~~~g---~~~l~~~~l~~~~~L~-~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~  252 (386)
T 2ca6_A          177 KEWAKTFQSHRLLHTVKMVQNGIRPEG---IEHLLLEGLAYCQELK-VLDLQDNTFTHLGSSALAIALKSWPNLRELGLN  252 (386)
T ss_dssp             HHHHHHHHHCTTCCEEECCSSCCCHHH---HHHHHHTTGGGCTTCC-EEECCSSCCHHHHHHHHHHHGGGCTTCCEEECT
T ss_pred             HHHHHHHHhCCCcCEEECcCCCCCHhH---HHHHHHHHhhcCCCcc-EEECcCCCCCcHHHHHHHHHHccCCCcCEEECC
Confidence            3   23445555555555444321000   000111 344445555 555553321101 24445556666677777776


Q ss_pred             eCCCC
Q 039475          240 FDKGE  244 (286)
Q Consensus       240 ~~~~~  244 (286)
                      +|..+
T Consensus       253 ~n~i~  257 (386)
T 2ca6_A          253 DCLLS  257 (386)
T ss_dssp             TCCCC
T ss_pred             CCCCc
Confidence            66655

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=99.33  E-value=4.8e-12  Score=120.03  Aligned_cols=103  Identities=20%  Similarity=0.214  Sum_probs=79.8

Q ss_pred             CCcEEEeccCCCCCCCcCccchhhhcCCCCCcEEEeecccCCccCcccCccccCCCCCcEEecccccccCCCCCCCCCcc
Q 039475           61 KLRSLSLFYDSKGQSAASPVLQGLFDQLTCLRALKIEELWYGDQTIEIPKGLENLIHLRYLKLSAVEELSETCYCPSLKR  140 (286)
Q Consensus        61 ~Lr~L~l~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~i~~lP~~i~~L~~Lr~L~L~~~~~LP~~~~~~~l~~  140 (286)
                      .|++|++++|....      +|. |+.++.|++|+|++    |.+..+|..|++|++|++|+|++          +.++.
T Consensus       442 ~L~~L~Ls~n~l~~------lp~-~~~l~~L~~L~Ls~----N~l~~lp~~~~~l~~L~~L~Ls~----------N~l~~  500 (567)
T 1dce_A          442 DVRVLHLAHKDLTV------LCH-LEQLLLVTHLDLSH----NRLRALPPALAALRCLEVLQASD----------NALEN  500 (567)
T ss_dssp             TCSEEECTTSCCSS------CCC-GGGGTTCCEEECCS----SCCCCCCGGGGGCTTCCEEECCS----------SCCCC
T ss_pred             CceEEEecCCCCCC------CcC-ccccccCcEeecCc----ccccccchhhhcCCCCCEEECCC----------CCCCC
Confidence            57788888876543      555 77888888888888    88888888888888888888875          66777


Q ss_pred             cccccccccCCCEEEecCCCcccc--ccccccccccccccccccccc
Q 039475          141 LPQGRGKLINLRHLIFDKDYLAYM--ANGFERLTSLRTLSGFTVARV  185 (286)
Q Consensus       141 LP~~i~~L~~L~~L~l~~~~~~~l--P~~i~~L~~L~~L~~~~~~~~  185 (286)
                      +| .+++|++|++|++++|.+..+  |..++.|++|++|++..+...
T Consensus       501 lp-~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~  546 (567)
T 1dce_A          501 VD-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLC  546 (567)
T ss_dssp             CG-GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGG
T ss_pred             Cc-ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCC
Confidence            77 788888888888888888776  677888888888877766544

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=99.32  E-value=2.7e-11  Score=115.94  Aligned_cols=72  Identities=18%  Similarity=0.087  Sum_probs=46.7

Q ss_pred             ccCCceEEEeecCCCCCCchhhhcCCCCcEEEeccCCCCCCCcCccchhhhcCCCCCcEEEeecccCCccCcccCccccC
Q 039475           35 CQEKLRHLTLMLGLPTKFPVSIFDAKKLRSLSLFYDSKGQSAASPVLQGLFDQLTCLRALKIEELWYGDQTIEIPKGLEN  114 (286)
Q Consensus        35 ~~~~~r~ls~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~i~~lP~~i~~  114 (286)
                      ++.+++.|.+..+.+..+|.   .+++|++|++++|....      +|.   .+++|++|++++    |.+..+|.   .
T Consensus        59 l~~~L~~L~L~~N~l~~lp~---~l~~L~~L~Ls~N~l~~------lp~---~l~~L~~L~Ls~----N~l~~l~~---~  119 (622)
T 3g06_A           59 LPAHITTLVIPDNNLTSLPA---LPPELRTLEVSGNQLTS------LPV---LPPGLLELSIFS----NPLTHLPA---L  119 (622)
T ss_dssp             CCTTCSEEEECSCCCSCCCC---CCTTCCEEEECSCCCSC------CCC---CCTTCCEEEECS----CCCCCCCC---C
T ss_pred             hCCCCcEEEecCCCCCCCCC---cCCCCCEEEcCCCcCCc------CCC---CCCCCCEEECcC----CcCCCCCC---C
Confidence            34678888888887776666   46788888888876542      443   566777777777    66666655   3


Q ss_pred             CCCCcEEeccc
Q 039475          115 LIHLRYLKLSA  125 (286)
Q Consensus       115 L~~Lr~L~L~~  125 (286)
                      +.+|++|++++
T Consensus       120 l~~L~~L~L~~  130 (622)
T 3g06_A          120 PSGLCKLWIFG  130 (622)
T ss_dssp             CTTCCEEECCS
T ss_pred             CCCcCEEECCC
Confidence            34444444443

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=99.31  E-value=2.1e-11  Score=112.68  Aligned_cols=148  Identities=21%  Similarity=0.206  Sum_probs=101.9

Q ss_pred             ccCCceEEEeecCCCCCCchhhhcCCCCcEEEeccCCCCCCCcCccchhhhcCCCCCcEEEeecccCCccCcccCccccC
Q 039475           35 CQEKLRHLTLMLGLPTKFPVSIFDAKKLRSLSLFYDSKGQSAASPVLQGLFDQLTCLRALKIEELWYGDQTIEIPKGLEN  114 (286)
Q Consensus        35 ~~~~~r~ls~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~i~~lP~~i~~  114 (286)
                      .+.+++.+.+..+....+|..   .++|++|++++|....      ++..   .+.|++|++++    |.+..+| ++++
T Consensus        89 ~~~~L~~L~l~~n~l~~lp~~---~~~L~~L~l~~n~l~~------l~~~---~~~L~~L~L~~----n~l~~lp-~~~~  151 (454)
T 1jl5_A           89 LPPHLESLVASCNSLTELPEL---PQSLKSLLVDNNNLKA------LSDL---PPLLEYLGVSN----NQLEKLP-ELQN  151 (454)
T ss_dssp             CCTTCSEEECCSSCCSSCCCC---CTTCCEEECCSSCCSC------CCSC---CTTCCEEECCS----SCCSSCC-CCTT
T ss_pred             CcCCCCEEEccCCcCCccccc---cCCCcEEECCCCccCc------ccCC---CCCCCEEECcC----CCCCCCc-ccCC
Confidence            467788999988887666643   4788999998886543      2321   26899999999    8888888 6999


Q ss_pred             CCCCcEEeccc--ccccCCC-C-------CCCCCcccccccccccCCCEEEecCCCcccccccccccccccccccccccc
Q 039475          115 LIHLRYLKLSA--VEELSET-C-------YCPSLKRLPQGRGKLINLRHLIFDKDYLAYMANGFERLTSLRTLSGFTVAR  184 (286)
Q Consensus       115 L~~Lr~L~L~~--~~~LP~~-~-------~~~~l~~LP~~i~~L~~L~~L~l~~~~~~~lP~~i~~L~~L~~L~~~~~~~  184 (286)
                      +.+|++|++++  ++.+|.. .       ..+.++.+| +++++++|++|++++|.+..+|...   .+|++|++..+..
T Consensus       152 l~~L~~L~l~~N~l~~lp~~~~~L~~L~L~~n~l~~l~-~~~~l~~L~~L~l~~N~l~~l~~~~---~~L~~L~l~~n~l  227 (454)
T 1jl5_A          152 SSFLKIIDVDNNSLKKLPDLPPSLEFIAAGNNQLEELP-ELQNLPFLTAIYADNNSLKKLPDLP---LSLESIVAGNNIL  227 (454)
T ss_dssp             CTTCCEEECCSSCCSCCCCCCTTCCEEECCSSCCSSCC-CCTTCTTCCEEECCSSCCSSCCCCC---TTCCEEECCSSCC
T ss_pred             CCCCCEEECCCCcCcccCCCcccccEEECcCCcCCcCc-cccCCCCCCEEECCCCcCCcCCCCc---CcccEEECcCCcC
Confidence            99999999988  6666655 3       334566677 5788888888888877777666433   3566666655532


Q ss_pred             cCCccCCCCCCcccccCcccccceeEEcc
Q 039475          185 VGGKYSSEACNLEGLRNLNHLRQFLRICG  213 (286)
Q Consensus       185 ~~~~~~~~~~~~~~l~~L~~L~~~L~i~~  213 (286)
                      .         .+..++.+++|+ .|.+.+
T Consensus       228 ~---------~lp~~~~l~~L~-~L~l~~  246 (454)
T 1jl5_A          228 E---------ELPELQNLPFLT-TIYADN  246 (454)
T ss_dssp             S---------SCCCCTTCTTCC-EEECCS
T ss_pred             C---------cccccCCCCCCC-EEECCC
Confidence            2         222355555555 565553

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=99.31  E-value=1.4e-11  Score=98.92  Aligned_cols=125  Identities=30%  Similarity=0.411  Sum_probs=99.1

Q ss_pred             ceEEEeecCCCCCCchhhhcCCCCcEEEeccCCCCCCCcCccchhhhcCCCCCcEEEeecccCCccCcccCcc-ccCCCC
Q 039475           39 LRHLTLMLGLPTKFPVSIFDAKKLRSLSLFYDSKGQSAASPVLQGLFDQLTCLRALKIEELWYGDQTIEIPKG-LENLIH  117 (286)
Q Consensus        39 ~r~ls~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~i~~lP~~-i~~L~~  117 (286)
                      .+.+....+....+|..+  .++|+.|++.++.....     .+..|..++.|++|++++    +.+..+|.. ++.+.+
T Consensus         9 ~~~l~~~~~~l~~~p~~~--~~~l~~L~l~~n~l~~~-----~~~~~~~l~~L~~L~l~~----n~l~~~~~~~~~~l~~   77 (177)
T 2o6r_A            9 GTEIRCNSKGLTSVPTGI--PSSATRLELESNKLQSL-----PHGVFDKLTQLTKLSLSQ----NQIQSLPDGVFDKLTK   77 (177)
T ss_dssp             TTEEECCSSCCSSCCTTC--CTTCSEEECCSSCCCCC-----CTTTTTTCTTCSEEECCS----SCCCCCCTTTTTTCTT
T ss_pred             CCEEEecCCCCccCCCCC--CCCCcEEEeCCCcccEe-----CHHHhcCcccccEEECCC----CcceEeChhHccCCCc
Confidence            355666666666667554  47899999999876532     556678899999999999    888888765 589999


Q ss_pred             CcEEecccccccCCCCCCCCCcccccc-cccccCCCEEEecCCCccccccc-ccccccccccccccccc
Q 039475          118 LRYLKLSAVEELSETCYCPSLKRLPQG-RGKLINLRHLIFDKDYLAYMANG-FERLTSLRTLSGFTVAR  184 (286)
Q Consensus       118 Lr~L~L~~~~~LP~~~~~~~l~~LP~~-i~~L~~L~~L~l~~~~~~~lP~~-i~~L~~L~~L~~~~~~~  184 (286)
                      |++|++++          +.++.+|.. ++++++|++|++++|.+..+|.+ +..+++|++|++..+..
T Consensus        78 L~~L~l~~----------N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~  136 (177)
T 2o6r_A           78 LTILYLHE----------NKLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPW  136 (177)
T ss_dssp             CCEEECCS----------SCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCB
T ss_pred             cCEEECCC----------CCccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCe
Confidence            99999986          678888765 58899999999999999988877 68889999988876643

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=99.30  E-value=3.7e-12  Score=102.36  Aligned_cols=108  Identities=20%  Similarity=0.244  Sum_probs=87.9

Q ss_pred             hhhcCCCCcEEEeccCCCCCCCcCccchhhhcCCCCCcEEEeecccCCccCcccCccccCCCCCcEEecccccccCCCCC
Q 039475           55 SIFDAKKLRSLSLFYDSKGQSAASPVLQGLFDQLTCLRALKIEELWYGDQTIEIPKGLENLIHLRYLKLSAVEELSETCY  134 (286)
Q Consensus        55 ~~~~l~~Lr~L~l~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~i~~lP~~i~~L~~Lr~L~L~~~~~LP~~~~  134 (286)
                      .+.+..+|+.|++.++....      ++......+.|++|++++    |.+..+ ..++.+.+|++|++++         
T Consensus        14 ~~~~~~~L~~L~l~~n~l~~------i~~~~~~~~~L~~L~Ls~----N~l~~~-~~l~~l~~L~~L~Ls~---------   73 (176)
T 1a9n_A           14 QYTNAVRDRELDLRGYKIPV------IENLGATLDQFDAIDFSD----NEIRKL-DGFPLLRRLKTLLVNN---------   73 (176)
T ss_dssp             EEECTTSCEEEECTTSCCCS------CCCGGGGTTCCSEEECCS----SCCCEE-CCCCCCSSCCEEECCS---------
T ss_pred             hcCCcCCceEEEeeCCCCch------hHHhhhcCCCCCEEECCC----CCCCcc-cccccCCCCCEEECCC---------
Confidence            45668899999999987653      455444444999999999    988888 6889999999999986         


Q ss_pred             CCCCccccccc-ccccCCCEEEecCCCcccccc--ccccccccccccccccc
Q 039475          135 CPSLKRLPQGR-GKLINLRHLIFDKDYLAYMAN--GFERLTSLRTLSGFTVA  183 (286)
Q Consensus       135 ~~~l~~LP~~i-~~L~~L~~L~l~~~~~~~lP~--~i~~L~~L~~L~~~~~~  183 (286)
                       +.+..+|..+ +.+++|++|++++|.+..+|.  .++.+++|++|++..+.
T Consensus        74 -N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~l~~l~~L~~L~l~~N~  124 (176)
T 1a9n_A           74 -NRICRIGEGLDQALPDLTELILTNNSLVELGDLDPLASLKSLTYLCILRNP  124 (176)
T ss_dssp             -SCCCEECSCHHHHCTTCCEEECCSCCCCCGGGGGGGGGCTTCCEEECCSSG
T ss_pred             -CcccccCcchhhcCCCCCEEECCCCcCCcchhhHhhhcCCCCCEEEecCCC
Confidence             7788888665 899999999999999988886  68888888888876654

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=99.30  E-value=3e-11  Score=115.70  Aligned_cols=113  Identities=19%  Similarity=0.139  Sum_probs=87.6

Q ss_pred             CceEEEeecCCCCCCchhhhcCCCCcEEEeccCCCCCCCcCccchhhhcCCCCCcEEEeecccCCccCcccCccccCCCC
Q 039475           38 KLRHLTLMLGLPTKFPVSIFDAKKLRSLSLFYDSKGQSAASPVLQGLFDQLTCLRALKIEELWYGDQTIEIPKGLENLIH  117 (286)
Q Consensus        38 ~~r~ls~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~i~~lP~~i~~L~~  117 (286)
                      ..+.+.+..+....+|..+.  ++|++|++.+|....      +|.   .+++|++|+|++    |.+..+|.   .+.+
T Consensus        41 ~l~~L~ls~n~L~~lp~~l~--~~L~~L~L~~N~l~~------lp~---~l~~L~~L~Ls~----N~l~~lp~---~l~~  102 (622)
T 3g06_A           41 GNAVLNVGESGLTTLPDCLP--AHITTLVIPDNNLTS------LPA---LPPELRTLEVSG----NQLTSLPV---LPPG  102 (622)
T ss_dssp             CCCEEECCSSCCSCCCSCCC--TTCSEEEECSCCCSC------CCC---CCTTCCEEEECS----CCCSCCCC---CCTT
T ss_pred             CCcEEEecCCCcCccChhhC--CCCcEEEecCCCCCC------CCC---cCCCCCEEEcCC----CcCCcCCC---CCCC
Confidence            47899999988888887765  899999999997653      554   578999999999    99999997   7899


Q ss_pred             CcEEeccc--ccccCCC-C-------CCCCCcccccccccccCCCEEEecCCCccccccccccc
Q 039475          118 LRYLKLSA--VEELSET-C-------YCPSLKRLPQGRGKLINLRHLIFDKDYLAYMANGFERL  171 (286)
Q Consensus       118 Lr~L~L~~--~~~LP~~-~-------~~~~l~~LP~~i~~L~~L~~L~l~~~~~~~lP~~i~~L  171 (286)
                      |++|++++  ++.+|.. .       ..+.++.+|..   +++|++|++++|.+..+|..+.+|
T Consensus       103 L~~L~Ls~N~l~~l~~~l~~L~~L~L~~N~l~~lp~~---l~~L~~L~Ls~N~l~~l~~~~~~L  163 (622)
T 3g06_A          103 LLELSIFSNPLTHLPALPSGLCKLWIFGNQLTSLPVL---PPGLQELSVSDNQLASLPALPSEL  163 (622)
T ss_dssp             CCEEEECSCCCCCCCCCCTTCCEEECCSSCCSCCCCC---CTTCCEEECCSSCCSCCCCCCTTC
T ss_pred             CCEEECcCCcCCCCCCCCCCcCEEECCCCCCCcCCCC---CCCCCEEECcCCcCCCcCCccCCC
Confidence            99999998  7777654 3       33456667754   367788888877777666544333

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=99.29  E-value=7.3e-12  Score=118.79  Aligned_cols=156  Identities=17%  Similarity=0.138  Sum_probs=112.9

Q ss_pred             chhhhcCCCCcEEE-eccCCCCCCCcCccchh------hhcC--CCCCcEEEeecccCCccCcccCccccCCCCCcEEec
Q 039475           53 PVSIFDAKKLRSLS-LFYDSKGQSAASPVLQG------LFDQ--LTCLRALKIEELWYGDQTIEIPKGLENLIHLRYLKL  123 (286)
Q Consensus        53 ~~~~~~l~~Lr~L~-l~~~~~~~~~~~~~~~~------~~~~--l~~Lr~L~L~~~~~~~~i~~lP~~i~~L~~Lr~L~L  123 (286)
                      |..+..+++|+.|+ +..+....      ++.      .+..  ...|++|+|++    |.+..+|. |+++.+|++|+|
T Consensus       402 ~~~l~~l~~L~~L~~l~~n~~~~------L~~l~l~~n~i~~l~~~~L~~L~Ls~----n~l~~lp~-~~~l~~L~~L~L  470 (567)
T 1dce_A          402 KETLQYFSTLKAVDPMRAAYLDD------LRSKFLLENSVLKMEYADVRVLHLAH----KDLTVLCH-LEQLLLVTHLDL  470 (567)
T ss_dssp             HHHHHHHHHHHHHCGGGHHHHHH------HHHHHHHHHHHHHHHHTTCSEEECTT----SCCSSCCC-GGGGTTCCEEEC
T ss_pred             HHHHHHHHhcccCcchhhcccch------hhhhhhhcccccccCccCceEEEecC----CCCCCCcC-ccccccCcEeec
Confidence            45566778888887 44432110      111      0111  23589999999    99999997 999999999999


Q ss_pred             ccccccCCCCCCCCCcccccccccccCCCEEEecCCCcccccccccccccccccccccccccCCccCCCCCC-cccccCc
Q 039475          124 SAVEELSETCYCPSLKRLPQGRGKLINLRHLIFDKDYLAYMANGFERLTSLRTLSGFTVARVGGKYSSEACN-LEGLRNL  202 (286)
Q Consensus       124 ~~~~~LP~~~~~~~l~~LP~~i~~L~~L~~L~l~~~~~~~lP~~i~~L~~L~~L~~~~~~~~~~~~~~~~~~-~~~l~~L  202 (286)
                      ++          +.++.+|..+++|++|++|++++|.+..+| .++.+++|++|++..+...       +.. +..++.|
T Consensus       471 s~----------N~l~~lp~~~~~l~~L~~L~Ls~N~l~~lp-~l~~l~~L~~L~Ls~N~l~-------~~~~p~~l~~l  532 (567)
T 1dce_A          471 SH----------NRLRALPPALAALRCLEVLQASDNALENVD-GVANLPRLQELLLCNNRLQ-------QSAAIQPLVSC  532 (567)
T ss_dssp             CS----------SCCCCCCGGGGGCTTCCEEECCSSCCCCCG-GGTTCSSCCEEECCSSCCC-------SSSTTGGGGGC
T ss_pred             Cc----------ccccccchhhhcCCCCCEEECCCCCCCCCc-ccCCCCCCcEEECCCCCCC-------CCCCcHHHhcC
Confidence            96          778899999999999999999999999998 8999999999999887654       232 5677888


Q ss_pred             ccccceeEEcccCCcccchhhhhhcCCCCCCceEEE
Q 039475          203 NHLRQFLRICGLGNLQMRLKINAHLEKKKNLVHLTL  238 (286)
Q Consensus       203 ~~L~~~L~i~~l~~~~~~~~~~~~l~~l~~L~~L~L  238 (286)
                      ++|+ .|.+.+..-..........+..+++|+.|++
T Consensus       533 ~~L~-~L~L~~N~l~~~~~~~~~l~~~lp~L~~L~l  567 (567)
T 1dce_A          533 PRLV-LLNLQGNSLCQEEGIQERLAEMLPSVSSILT  567 (567)
T ss_dssp             TTCC-EEECTTSGGGGSSSCTTHHHHHCTTCSEEEC
T ss_pred             CCCC-EEEecCCcCCCCccHHHHHHHHCcccCccCC
Confidence            8888 7888754221112222233444778888763

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=99.27  E-value=3.6e-11  Score=113.91  Aligned_cols=169  Identities=16%  Similarity=0.157  Sum_probs=103.5

Q ss_pred             CceEEEeecCCCCCCchhhhcCCCCcEEEeccCCCCCCCcCccchhhhcCCCCCcEEEeecccCCccCcccCccccCCCC
Q 039475           38 KLRHLTLMLGLPTKFPVSIFDAKKLRSLSLFYDSKGQSAASPVLQGLFDQLTCLRALKIEELWYGDQTIEIPKGLENLIH  117 (286)
Q Consensus        38 ~~r~ls~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~i~~lP~~i~~L~~  117 (286)
                      +++.+.+..+.+..+|..+  .++|++|++++|....      +|   ..+++|++|++++    |.+..+|. +++  +
T Consensus        60 ~L~~L~Ls~n~L~~lp~~l--~~~L~~L~Ls~N~l~~------ip---~~l~~L~~L~Ls~----N~l~~ip~-l~~--~  121 (571)
T 3cvr_A           60 QFSELQLNRLNLSSLPDNL--PPQITVLEITQNALIS------LP---ELPASLEYLDACD----NRLSTLPE-LPA--S  121 (571)
T ss_dssp             TCSEEECCSSCCSCCCSCC--CTTCSEEECCSSCCSC------CC---CCCTTCCEEECCS----SCCSCCCC-CCT--T
T ss_pred             CccEEEeCCCCCCccCHhH--cCCCCEEECcCCCCcc------cc---cccCCCCEEEccC----CCCCCcch-hhc--C
Confidence            4566666666555555544  2566666666665432      44   3355666666666    66666665 544  6


Q ss_pred             CcEEeccc--ccccCCC-C-------CCCCCcccccccccccCCCEEEecCCCcccccccccccccccccccccccccCC
Q 039475          118 LRYLKLSA--VEELSET-C-------YCPSLKRLPQGRGKLINLRHLIFDKDYLAYMANGFERLTSLRTLSGFTVARVGG  187 (286)
Q Consensus       118 Lr~L~L~~--~~~LP~~-~-------~~~~l~~LP~~i~~L~~L~~L~l~~~~~~~lP~~i~~L~~L~~L~~~~~~~~~~  187 (286)
                      |++|++++  ++.+|.. .       ..+.++.+|.   .+++|++|++++|.+..+|. |+  ++|++|++..+.... 
T Consensus       122 L~~L~Ls~N~l~~lp~~l~~L~~L~Ls~N~l~~lp~---~l~~L~~L~Ls~N~L~~lp~-l~--~~L~~L~Ls~N~L~~-  194 (571)
T 3cvr_A          122 LKHLDVDNNQLTMLPELPALLEYINADNNQLTMLPE---LPTSLEVLSVRNNQLTFLPE-LP--ESLEALDVSTNLLES-  194 (571)
T ss_dssp             CCEEECCSSCCSCCCCCCTTCCEEECCSSCCSCCCC---CCTTCCEEECCSSCCSCCCC-CC--TTCCEEECCSSCCSS-
T ss_pred             CCEEECCCCcCCCCCCcCccccEEeCCCCccCcCCC---cCCCcCEEECCCCCCCCcch-hh--CCCCEEECcCCCCCc-
Confidence            66666665  4444432 1       2356777776   57788889998888888887 66  788888887765431 


Q ss_pred             ccCCCCCCccccc-Cc----ccccceeEEcccCCcccchhhhhhcCCCCCCceEEEEeCCCC
Q 039475          188 KYSSEACNLEGLR-NL----NHLRQFLRICGLGNLQMRLKINAHLEKKKNLVHLTLDFDKGE  244 (286)
Q Consensus       188 ~~~~~~~~~~~l~-~L----~~L~~~L~i~~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~  244 (286)
                          .+.    +. +|    ..|+ .|.+.+..    ...++..+..+++|+.|+|+.|...
T Consensus       195 ----lp~----~~~~L~~~~~~L~-~L~Ls~N~----l~~lp~~l~~l~~L~~L~L~~N~l~  243 (571)
T 3cvr_A          195 ----LPA----VPVRNHHSEETEI-FFRCRENR----ITHIPENILSLDPTCTIILEDNPLS  243 (571)
T ss_dssp             ----CCC----CC--------CCE-EEECCSSC----CCCCCGGGGGSCTTEEEECCSSSCC
T ss_pred             ----hhh----HHHhhhcccccce-EEecCCCc----ceecCHHHhcCCCCCEEEeeCCcCC
Confidence                111    22 22    1115 56665321    2245666777999999999999887

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=99.26  E-value=2e-11  Score=98.10  Aligned_cols=113  Identities=22%  Similarity=0.289  Sum_probs=88.6

Q ss_pred             ceEEEeecCCCCCCchhhhcCCCCcEEEeccCCCCCCCcCccchhhhcCCCCCcEEEeecccCCccCcccCcc-ccCCCC
Q 039475           39 LRHLTLMLGLPTKFPVSIFDAKKLRSLSLFYDSKGQSAASPVLQGLFDQLTCLRALKIEELWYGDQTIEIPKG-LENLIH  117 (286)
Q Consensus        39 ~r~ls~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~i~~lP~~-i~~L~~  117 (286)
                      .+.+....+....+|..+.  ++|+.|++++|.....     .|..|.++++|++|+|++    |.+..+|.. ++++.+
T Consensus        14 ~~~l~~~~n~l~~iP~~~~--~~L~~L~Ls~N~l~~~-----~~~~~~~l~~L~~L~Ls~----N~l~~i~~~~~~~l~~   82 (174)
T 2r9u_A           14 QTLVNCQNIRLASVPAGIP--TDKQRLWLNNNQITKL-----EPGVFDHLVNLQQLYFNS----NKLTAIPTGVFDKLTQ   82 (174)
T ss_dssp             SSEEECCSSCCSSCCSCCC--TTCSEEECCSSCCCCC-----CTTTTTTCTTCCEEECCS----SCCCCCCTTTTTTCTT
T ss_pred             CcEEEeCCCCCCccCCCcC--CCCcEEEeCCCCcccc-----CHHHhcCCcCCCEEECCC----CCCCccChhHhCCcch
Confidence            3567777777777777663  8889999988876542     577788899999999999    888888876 488899


Q ss_pred             CcEEecccccccCCCCCCCCCcccccc-cccccCCCEEEecCCCcccccccccccc
Q 039475          118 LRYLKLSAVEELSETCYCPSLKRLPQG-RGKLINLRHLIFDKDYLAYMANGFERLT  172 (286)
Q Consensus       118 Lr~L~L~~~~~LP~~~~~~~l~~LP~~-i~~L~~L~~L~l~~~~~~~lP~~i~~L~  172 (286)
                      |++|+|++          +.++.+|.. ++++++|++|++++|.+...|..+..+.
T Consensus        83 L~~L~L~~----------N~l~~l~~~~~~~l~~L~~L~L~~N~~~c~~~~~~~l~  128 (174)
T 2r9u_A           83 LTQLDLND----------NHLKSIPRGAFDNLKSLTHIYLYNNPWDCECRDIMYLR  128 (174)
T ss_dssp             CCEEECCS----------SCCCCCCTTTTTTCTTCSEEECCSSCBCTTBGGGHHHH
T ss_pred             hhEEECCC----------CccceeCHHHhccccCCCEEEeCCCCcccccccHHHHH
Confidence            99999985          778888875 7888899999999888877766555544

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=99.26  E-value=2.6e-11  Score=114.88  Aligned_cols=103  Identities=23%  Similarity=0.231  Sum_probs=70.4

Q ss_pred             CCCcEEEeccCCCCCCCcCccchhhhcCCCCCcEEEeecccCCccCcccCccccCCCCCcEEeccc--ccccCCC-C---
Q 039475           60 KKLRSLSLFYDSKGQSAASPVLQGLFDQLTCLRALKIEELWYGDQTIEIPKGLENLIHLRYLKLSA--VEELSET-C---  133 (286)
Q Consensus        60 ~~Lr~L~l~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~i~~lP~~i~~L~~Lr~L~L~~--~~~LP~~-~---  133 (286)
                      .+|+.|++.++....      +|..+  +++|++|+|++    |.+..+|   +.+.+|++|++++  ++.+|.- .   
T Consensus        59 ~~L~~L~Ls~n~L~~------lp~~l--~~~L~~L~Ls~----N~l~~ip---~~l~~L~~L~Ls~N~l~~ip~l~~~L~  123 (571)
T 3cvr_A           59 NQFSELQLNRLNLSS------LPDNL--PPQITVLEITQ----NALISLP---ELPASLEYLDACDNRLSTLPELPASLK  123 (571)
T ss_dssp             TTCSEEECCSSCCSC------CCSCC--CTTCSEEECCS----SCCSCCC---CCCTTCCEEECCSSCCSCCCCCCTTCC
T ss_pred             CCccEEEeCCCCCCc------cCHhH--cCCCCEEECcC----CCCcccc---cccCCCCEEEccCCCCCCcchhhcCCC
Confidence            399999999997654      45433  47899999999    9999999   5689999999997  4444432 1   


Q ss_pred             ----CCCCCcccccccccccCCCEEEecCCCccccccccccccccccccccccc
Q 039475          134 ----YCPSLKRLPQGRGKLINLRHLIFDKDYLAYMANGFERLTSLRTLSGFTVA  183 (286)
Q Consensus       134 ----~~~~l~~LP~~i~~L~~L~~L~l~~~~~~~lP~~i~~L~~L~~L~~~~~~  183 (286)
                          ..+.+..+|.   .+++|++|++++|.+..+|.   .+++|++|++..+.
T Consensus       124 ~L~Ls~N~l~~lp~---~l~~L~~L~Ls~N~l~~lp~---~l~~L~~L~Ls~N~  171 (571)
T 3cvr_A          124 HLDVDNNQLTMLPE---LPALLEYINADNNQLTMLPE---LPTSLEVLSVRNNQ  171 (571)
T ss_dssp             EEECCSSCCSCCCC---CCTTCCEEECCSSCCSCCCC---CCTTCCEEECCSSC
T ss_pred             EEECCCCcCCCCCC---cCccccEEeCCCCccCcCCC---cCCCcCEEECCCCC
Confidence                2233445555   45566666666666666554   34566666655554

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=99.25  E-value=8.4e-14  Score=114.25  Aligned_cols=134  Identities=19%  Similarity=0.222  Sum_probs=84.9

Q ss_pred             chhhhcCCCCCcEEEeecccCCccCcccCccccCCCCCcEEecccccccCCCCCCCCCcccccccccccCCCEEEecCCC
Q 039475           81 LQGLFDQLTCLRALKIEELWYGDQTIEIPKGLENLIHLRYLKLSAVEELSETCYCPSLKRLPQGRGKLINLRHLIFDKDY  160 (286)
Q Consensus        81 ~~~~~~~l~~Lr~L~L~~~~~~~~i~~lP~~i~~L~~Lr~L~L~~~~~LP~~~~~~~l~~LP~~i~~L~~L~~L~l~~~~  160 (286)
                      +|..|..++.|++|++++    +.+..+| .++++.+|++|++++          +.+..+|..++.+++|++|++++|.
T Consensus        40 l~~~~~~l~~L~~L~ls~----n~l~~l~-~~~~l~~L~~L~l~~----------n~l~~l~~~~~~~~~L~~L~L~~N~  104 (198)
T 1ds9_A           40 MDATLSTLKACKHLALST----NNIEKIS-SLSGMENLRILSLGR----------NLIKKIENLDAVADTLEELWISYNQ  104 (198)
T ss_dssp             CHHHHHHTTTCSEEECSE----EEESCCC-CHHHHTTCCEEEEEE----------EEECSCSSHHHHHHHCSEEEEEEEE
T ss_pred             hhHHHhcCCCCCEEECCC----CCCcccc-ccccCCCCCEEECCC----------CCcccccchhhcCCcCCEEECcCCc
Confidence            445677777777777777    7777777 777777777777774          5566777766777777777777777


Q ss_pred             cccccccccccccccccccccccccCCccCCCCCCcccccCcccccceeEEcccCCccc-------chhhhhhcCCCCCC
Q 039475          161 LAYMANGFERLTSLRTLSGFTVARVGGKYSSEACNLEGLRNLNHLRQFLRICGLGNLQM-------RLKINAHLEKKKNL  233 (286)
Q Consensus       161 ~~~lP~~i~~L~~L~~L~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~~L~i~~l~~~~~-------~~~~~~~l~~l~~L  233 (286)
                      +..+| +++.+++|++|++..+....      ...+..+..+++|+ .|.+.+..-...       .......+..+++|
T Consensus       105 l~~l~-~~~~l~~L~~L~l~~N~i~~------~~~~~~l~~l~~L~-~L~l~~N~l~~~~~~~~~~~~~~~~~~~~l~~L  176 (198)
T 1ds9_A          105 IASLS-GIEKLVNLRVLYMSNNKITN------WGEIDKLAALDKLE-DLLLAGNPLYNDYKENNATSEYRIEVVKRLPNL  176 (198)
T ss_dssp             CCCHH-HHHHHHHSSEEEESEEECCC------HHHHHHHTTTTTCS-EEEECSCHHHHHHHTTTTHHHHHHHHHHHCSSC
T ss_pred             CCcCC-ccccCCCCCEEECCCCcCCc------hhHHHHHhcCCCCC-EEEecCCccccccccccchHHHHHHHHHhCCCc
Confidence            77766 57777777777776654330      11123456666666 666664311000       01112236778888


Q ss_pred             ceEE
Q 039475          234 VHLT  237 (286)
Q Consensus       234 ~~L~  237 (286)
                      +.|+
T Consensus       177 ~~Ld  180 (198)
T 1ds9_A          177 KKLD  180 (198)
T ss_dssp             SEEC
T ss_pred             EEEC
Confidence            8876

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=99.25  E-value=5.1e-11  Score=97.34  Aligned_cols=109  Identities=23%  Similarity=0.256  Sum_probs=96.8

Q ss_pred             ccCCceEEEeecCCCCCCchhhhcCCCCcEEEeccCCCCCCCcCccchhhhcCCCCCcEEEeecccCCccCcccCc-ccc
Q 039475           35 CQEKLRHLTLMLGLPTKFPVSIFDAKKLRSLSLFYDSKGQSAASPVLQGLFDQLTCLRALKIEELWYGDQTIEIPK-GLE  113 (286)
Q Consensus        35 ~~~~~r~ls~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~i~~lP~-~i~  113 (286)
                      ++.+++.|.+..+.+..+|..+..+++|+.|++++|.....     .+..|.+++.|++|+|++    |.+..+|. .++
T Consensus        29 ~~~~l~~L~L~~n~i~~ip~~~~~l~~L~~L~Ls~N~i~~i-----~~~~f~~l~~L~~L~Ls~----N~l~~i~~~~f~   99 (193)
T 2wfh_A           29 IPRDVTELYLDGNQFTLVPKELSNYKHLTLIDLSNNRISTL-----SNQSFSNMTQLLTLILSY----NRLRCIPPRTFD   99 (193)
T ss_dssp             CCTTCCEEECCSSCCCSCCGGGGGCTTCCEEECCSSCCCCC-----CTTTTTTCTTCCEEECCS----SCCCBCCTTTTT
T ss_pred             CCCCCCEEECCCCcCchhHHHhhcccCCCEEECCCCcCCEe-----CHhHccCCCCCCEEECCC----CccCEeCHHHhC
Confidence            45689999999999988999999999999999999987642     667899999999999999    99998875 699


Q ss_pred             CCCCCcEEecccccccCCCCCCCCCcccccc-cccccCCCEEEecCCCcc
Q 039475          114 NLIHLRYLKLSAVEELSETCYCPSLKRLPQG-RGKLINLRHLIFDKDYLA  162 (286)
Q Consensus       114 ~L~~Lr~L~L~~~~~LP~~~~~~~l~~LP~~-i~~L~~L~~L~l~~~~~~  162 (286)
                      .+.+|++|+|++          +.++.+|.. +..+++|++|++++|.+.
T Consensus       100 ~l~~L~~L~L~~----------N~l~~~~~~~~~~l~~L~~L~L~~N~~~  139 (193)
T 2wfh_A          100 GLKSLRLLSLHG----------NDISVVPEGAFNDLSALSHLAIGANPLY  139 (193)
T ss_dssp             TCTTCCEEECCS----------SCCCBCCTTTTTTCTTCCEEECCSSCEE
T ss_pred             CCCCCCEEECCC----------CCCCeeChhhhhcCccccEEEeCCCCee
Confidence            999999999996          778888874 789999999999998764

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=99.23  E-value=1.1e-10  Score=107.70  Aligned_cols=128  Identities=21%  Similarity=0.199  Sum_probs=89.7

Q ss_pred             CCceEEEeecCCCCCCchhhhcCCCCcEEEeccCCCCCCCcCccchhhhcCCCCCcEEEeecccCCccCcccCccccCCC
Q 039475           37 EKLRHLTLMLGLPTKFPVSIFDAKKLRSLSLFYDSKGQSAASPVLQGLFDQLTCLRALKIEELWYGDQTIEIPKGLENLI  116 (286)
Q Consensus        37 ~~~r~ls~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~i~~lP~~i~~L~  116 (286)
                      .+.+.+.+..+....+| .+..+++|++|++++|....      +|..   +..|++|++++    +.+..+| ++++++
T Consensus       131 ~~L~~L~L~~n~l~~lp-~~~~l~~L~~L~l~~N~l~~------lp~~---~~~L~~L~L~~----n~l~~l~-~~~~l~  195 (454)
T 1jl5_A          131 PLLEYLGVSNNQLEKLP-ELQNSSFLKIIDVDNNSLKK------LPDL---PPSLEFIAAGN----NQLEELP-ELQNLP  195 (454)
T ss_dssp             TTCCEEECCSSCCSSCC-CCTTCTTCCEEECCSSCCSC------CCCC---CTTCCEEECCS----SCCSSCC-CCTTCT
T ss_pred             CCCCEEECcCCCCCCCc-ccCCCCCCCEEECCCCcCcc------cCCC---cccccEEECcC----CcCCcCc-cccCCC
Confidence            56677777777666666 47777788888887776543      3332   34778888888    7777777 688899


Q ss_pred             CCcEEeccc--ccccCCC-C-------CCCCCcccccccccccCCCEEEecCCCccccccccccccccccccccccc
Q 039475          117 HLRYLKLSA--VEELSET-C-------YCPSLKRLPQGRGKLINLRHLIFDKDYLAYMANGFERLTSLRTLSGFTVA  183 (286)
Q Consensus       117 ~Lr~L~L~~--~~~LP~~-~-------~~~~l~~LP~~i~~L~~L~~L~l~~~~~~~lP~~i~~L~~L~~L~~~~~~  183 (286)
                      +|++|++++  +..+|.. .       ..+.+..+| .++++++|++|++++|.+..+|..+   ++|++|++..+.
T Consensus       196 ~L~~L~l~~N~l~~l~~~~~~L~~L~l~~n~l~~lp-~~~~l~~L~~L~l~~N~l~~l~~~~---~~L~~L~l~~N~  268 (454)
T 1jl5_A          196 FLTAIYADNNSLKKLPDLPLSLESIVAGNNILEELP-ELQNLPFLTTIYADNNLLKTLPDLP---PSLEALNVRDNY  268 (454)
T ss_dssp             TCCEEECCSSCCSSCCCCCTTCCEEECCSSCCSSCC-CCTTCTTCCEEECCSSCCSSCCSCC---TTCCEEECCSSC
T ss_pred             CCCEEECCCCcCCcCCCCcCcccEEECcCCcCCccc-ccCCCCCCCEEECCCCcCCcccccc---cccCEEECCCCc
Confidence            999999988  6666554 3       334566788 4888888888888888888777533   556666655443

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=99.21  E-value=2.6e-11  Score=108.51  Aligned_cols=195  Identities=13%  Similarity=0.056  Sum_probs=115.8

Q ss_pred             CceEEEeecCCCCCC-chhhhcC-----CCCcEEEeccCCCCCCCcCccchhhhcCC-CCCcEEEeecccCCccCcccCc
Q 039475           38 KLRHLTLMLGLPTKF-PVSIFDA-----KKLRSLSLFYDSKGQSAASPVLQGLFDQL-TCLRALKIEELWYGDQTIEIPK  110 (286)
Q Consensus        38 ~~r~ls~~~~~~~~~-~~~~~~l-----~~Lr~L~l~~~~~~~~~~~~~~~~~~~~l-~~Lr~L~L~~~~~~~~i~~lP~  110 (286)
                      +++.+.+..+.+... +..+..+     ++|++|++++|....... ..+...+..+ +.|++|++++    |.+...+.
T Consensus        52 ~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~-~~l~~~l~~~~~~L~~L~Ls~----N~l~~~~~  126 (362)
T 3goz_A           52 SVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNFLSYKSS-DELVKTLAAIPFTITVLDLGW----NDFSSKSS  126 (362)
T ss_dssp             TCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCH-HHHHHHHHTSCTTCCEEECCS----SCGGGSCH
T ss_pred             ceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCCcCChHHH-HHHHHHHHhCCCCccEEECcC----CcCCcHHH
Confidence            567777776665332 3344443     677777777776432200 0011223444 6677777777    66654443


Q ss_pred             -c----ccCC-CCCcEEeccc--cc-----cc-------CCC-C----CCCCCcccc-c----ccccc-cCCCEEEecCC
Q 039475          111 -G----LENL-IHLRYLKLSA--VE-----EL-------SET-C----YCPSLKRLP-Q----GRGKL-INLRHLIFDKD  159 (286)
Q Consensus       111 -~----i~~L-~~Lr~L~L~~--~~-----~L-------P~~-~----~~~~l~~LP-~----~i~~L-~~L~~L~l~~~  159 (286)
                       .    +..+ .+|++|++++  ++     .+       |.. .    ..+.+...+ .    .+..+ ++|++|++++|
T Consensus       127 ~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N  206 (362)
T 3goz_A          127 SEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSAN  206 (362)
T ss_dssp             HHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTS
T ss_pred             HHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHHHhcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCC
Confidence             2    2332 4666676665  33     12       111 1    123344332 2    34445 69999999999


Q ss_pred             Cccc-----cccccccc-ccccccccccccccCCccCCCCCCc----ccccCcccccceeEEcccC--Cccc--chhhhh
Q 039475          160 YLAY-----MANGFERL-TSLRTLSGFTVARVGGKYSSEACNL----EGLRNLNHLRQFLRICGLG--NLQM--RLKINA  225 (286)
Q Consensus       160 ~~~~-----lP~~i~~L-~~L~~L~~~~~~~~~~~~~~~~~~~----~~l~~L~~L~~~L~i~~l~--~~~~--~~~~~~  225 (286)
                      .+..     ++..+..+ ++|++|++..+...       ....    ..+..+++|+ .|.+.+..  .+..  ...+..
T Consensus       207 ~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~-------~~~~~~l~~~~~~l~~L~-~L~L~~n~l~~i~~~~~~~l~~  278 (362)
T 3goz_A          207 LLGLKSYAELAYIFSSIPNHVVSLNLCLNCLH-------GPSLENLKLLKDSLKHLQ-TVYLDYDIVKNMSKEQCKALGA  278 (362)
T ss_dssp             CGGGSCHHHHHHHHHHSCTTCCEEECCSSCCC-------CCCHHHHHHTTTTTTTCS-EEEEEHHHHTTCCHHHHHHHHT
T ss_pred             CCChhHHHHHHHHHhcCCCCceEEECcCCCCC-------cHHHHHHHHHHhcCCCcc-EEEeccCCccccCHHHHHHHHH
Confidence            9887     67777774 59999999887654       2222    2245667777 78887543  2222  445566


Q ss_pred             hcCCCCCCceEEEEeCCCCC
Q 039475          226 HLEKKKNLVHLTLDFDKGED  245 (286)
Q Consensus       226 ~l~~l~~L~~L~L~~~~~~~  245 (286)
                      .+..+++|+.|+++.|...+
T Consensus       279 ~~~~l~~L~~LdL~~N~l~~  298 (362)
T 3goz_A          279 AFPNIQKIILVDKNGKEIHP  298 (362)
T ss_dssp             TSTTCCEEEEECTTSCBCCG
T ss_pred             HhccCCceEEEecCCCcCCC
Confidence            78889999999999998874

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=99.21  E-value=6.7e-11  Score=96.43  Aligned_cols=109  Identities=17%  Similarity=0.137  Sum_probs=94.8

Q ss_pred             ccCCceEEEeecCCCCCCchh--hhcCCCCcEEEeccCCCCCCCcCccchhhhcCCCCCcEEEeecccCCccCcccCc-c
Q 039475           35 CQEKLRHLTLMLGLPTKFPVS--IFDAKKLRSLSLFYDSKGQSAASPVLQGLFDQLTCLRALKIEELWYGDQTIEIPK-G  111 (286)
Q Consensus        35 ~~~~~r~ls~~~~~~~~~~~~--~~~l~~Lr~L~l~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~i~~lP~-~  111 (286)
                      ++..++.+.+..+.+..++..  +..+++|++|++++|.....     .|..|.+++.|++|+|++    |.+..+|. .
T Consensus        27 ~~~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~-----~~~~~~~l~~L~~L~Ls~----N~l~~~~~~~   97 (192)
T 1w8a_A           27 IPLHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGI-----EPNAFEGASHIQELQLGE----NKIKEISNKM   97 (192)
T ss_dssp             CCTTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCB-----CTTTTTTCTTCCEEECCS----CCCCEECSSS
T ss_pred             CCCCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCc-----CHhHcCCcccCCEEECCC----CcCCccCHHH
Confidence            455899999999988777653  88999999999999987643     688899999999999999    99998776 4


Q ss_pred             ccCCCCCcEEecccccccCCCCCCCCCccc-ccccccccCCCEEEecCCCcc
Q 039475          112 LENLIHLRYLKLSAVEELSETCYCPSLKRL-PQGRGKLINLRHLIFDKDYLA  162 (286)
Q Consensus       112 i~~L~~Lr~L~L~~~~~LP~~~~~~~l~~L-P~~i~~L~~L~~L~l~~~~~~  162 (286)
                      ++++++|++|+|++          +.+..+ |..+..+++|++|++++|.+.
T Consensus        98 ~~~l~~L~~L~L~~----------N~l~~~~~~~~~~l~~L~~L~L~~N~l~  139 (192)
T 1w8a_A           98 FLGLHQLKTLNLYD----------NQISCVMPGSFEHLNSLTSLNLASNPFN  139 (192)
T ss_dssp             STTCTTCCEEECCS----------SCCCEECTTSSTTCTTCCEEECTTCCBC
T ss_pred             hcCCCCCCEEECCC----------CcCCeeCHHHhhcCCCCCEEEeCCCCcc
Confidence            89999999999996          677766 678899999999999999876

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=99.21  E-value=2.2e-12  Score=118.62  Aligned_cols=36  Identities=19%  Similarity=0.024  Sum_probs=18.0

Q ss_pred             cccCCCEEEecCCCccc-----ccccccccccccccccccc
Q 039475          147 KLINLRHLIFDKDYLAY-----MANGFERLTSLRTLSGFTV  182 (286)
Q Consensus       147 ~L~~L~~L~l~~~~~~~-----lP~~i~~L~~L~~L~~~~~  182 (286)
                      .+++|++|++++|.+..     +|..+.++++|++|++..+
T Consensus       254 ~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n  294 (461)
T 1z7x_W          254 PSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGN  294 (461)
T ss_dssp             TTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTC
T ss_pred             CCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCC
Confidence            34555555555554443     3444455555555554433

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=99.19  E-value=2.3e-12  Score=118.56  Aligned_cols=88  Identities=15%  Similarity=0.026  Sum_probs=49.8

Q ss_pred             cCCCEEEecCCCccc-----ccccccccccccccccccccccCCccCCCCCCcccc----cC-cccccceeEEcccCCcc
Q 039475          149 INLRHLIFDKDYLAY-----MANGFERLTSLRTLSGFTVARVGGKYSSEACNLEGL----RN-LNHLRQFLRICGLGNLQ  218 (286)
Q Consensus       149 ~~L~~L~l~~~~~~~-----lP~~i~~L~~L~~L~~~~~~~~~~~~~~~~~~~~~l----~~-L~~L~~~L~i~~l~~~~  218 (286)
                      ++|++|++++|.+..     +|..+..+++|++|++..+...       ...+..+    .. .++|+ .|.+.+..-..
T Consensus       313 ~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~-------~~~~~~l~~~l~~~~~~L~-~L~L~~n~i~~  384 (461)
T 1z7x_W          313 CQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLE-------DAGVRELCQGLGQPGSVLR-VLWLADCDVSD  384 (461)
T ss_dssp             CCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCH-------HHHHHHHHHHHTSTTCCCC-EEECTTSCCCH
T ss_pred             ccceeeEcCCCCCchHHHHHHHHHHhhCCCccEEEccCCccc-------cccHHHHHHHHcCCCCceE-EEECCCCCCCh
Confidence            466666666665542     3445566677777776655432       1111211    11 34566 66666542211


Q ss_pred             c-chhhhhhcCCCCCCceEEEEeCCCC
Q 039475          219 M-RLKINAHLEKKKNLVHLTLDFDKGE  244 (286)
Q Consensus       219 ~-~~~~~~~l~~l~~L~~L~L~~~~~~  244 (286)
                      . ...++..+..+++|++|++++|..+
T Consensus       385 ~~~~~l~~~l~~~~~L~~L~l~~N~i~  411 (461)
T 1z7x_W          385 SSCSSLAATLLANHSLRELDLSNNCLG  411 (461)
T ss_dssp             HHHHHHHHHHHHCCCCCEEECCSSSCC
T ss_pred             hhHHHHHHHHHhCCCccEEECCCCCCC
Confidence            1 2356667777888888888888776

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=99.17  E-value=2.3e-12  Score=105.56  Aligned_cols=126  Identities=18%  Similarity=0.144  Sum_probs=105.6

Q ss_pred             CceEEEeecC--CCCCCchhhhcCCCCcEEEeccCCCCCCCcCccchhhhcCCCCCcEEEeecccCCccCcccCccccCC
Q 039475           38 KLRHLTLMLG--LPTKFPVSIFDAKKLRSLSLFYDSKGQSAASPVLQGLFDQLTCLRALKIEELWYGDQTIEIPKGLENL  115 (286)
Q Consensus        38 ~~r~ls~~~~--~~~~~~~~~~~l~~Lr~L~l~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~i~~lP~~i~~L  115 (286)
                      .++...+...  ....+|..+..+++|++|++++|....      +| .+..+++|++|++++    |.+..+|..++.+
T Consensus        24 ~l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~l~~------l~-~~~~l~~L~~L~l~~----n~l~~l~~~~~~~   92 (198)
T 1ds9_A           24 EAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEK------IS-SLSGMENLRILSLGR----NLIKKIENLDAVA   92 (198)
T ss_dssp             TCSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEEESC------CC-CHHHHTTCCEEEEEE----EEECSCSSHHHHH
T ss_pred             chheeEeccccCcHhhhhHHHhcCCCCCEEECCCCCCcc------cc-ccccCCCCCEEECCC----CCcccccchhhcC
Confidence            4555555543  345567789999999999999987543      56 678999999999999    9999999989999


Q ss_pred             CCCcEEecccccccCCCCCCCCCcccccccccccCCCEEEecCCCcccccc--ccccccccccccccccccc
Q 039475          116 IHLRYLKLSAVEELSETCYCPSLKRLPQGRGKLINLRHLIFDKDYLAYMAN--GFERLTSLRTLSGFTVARV  185 (286)
Q Consensus       116 ~~Lr~L~L~~~~~LP~~~~~~~l~~LP~~i~~L~~L~~L~l~~~~~~~lP~--~i~~L~~L~~L~~~~~~~~  185 (286)
                      ++|++|++++          +.+..+| .++++++|++|++++|.+..+|.  .++.+++|++|++..+...
T Consensus        93 ~~L~~L~L~~----------N~l~~l~-~~~~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~  153 (198)
T 1ds9_A           93 DTLEELWISY----------NQIASLS-GIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLY  153 (198)
T ss_dssp             HHCSEEEEEE----------EECCCHH-HHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHH
T ss_pred             CcCCEEECcC----------CcCCcCC-ccccCCCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCccc
Confidence            9999999996          6788888 69999999999999999988765  6999999999998877543

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=99.15  E-value=1.4e-10  Score=92.78  Aligned_cols=107  Identities=23%  Similarity=0.351  Sum_probs=78.4

Q ss_pred             ceEEEeecCCCCCCchhhhcCCCCcEEEeccCCCCCCCcCccchhhhcCCCCCcEEEeecccCCccCcccCcc-ccCCCC
Q 039475           39 LRHLTLMLGLPTKFPVSIFDAKKLRSLSLFYDSKGQSAASPVLQGLFDQLTCLRALKIEELWYGDQTIEIPKG-LENLIH  117 (286)
Q Consensus        39 ~r~ls~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~i~~lP~~-i~~L~~  117 (286)
                      .+.+.+..+....+|..+  .++|++|++++|.....     .|..|.+++.|++|+|++    |.+..+|.. ++.+.+
T Consensus        11 ~~~l~~s~n~l~~ip~~~--~~~l~~L~L~~N~i~~~-----~~~~~~~l~~L~~L~Ls~----N~l~~l~~~~f~~l~~   79 (170)
T 3g39_A           11 GTTVDCSGKSLASVPTGI--PTTTQVLYLYDNQITKL-----EPGVFDRLTQLTRLDLDN----NQLTVLPAGVFDKLTQ   79 (170)
T ss_dssp             TTEEECTTSCCSSCCSCC--CTTCSEEECCSSCCCCC-----CTTTTTTCTTCSEEECCS----SCCCCCCTTTTTTCTT
T ss_pred             CCEEEeCCCCcCccCccC--CCCCcEEEcCCCcCCcc-----ChhhhcCcccCCEEECCC----CCcCccChhhccCCCC
Confidence            356667777666677655  37788888888876542     566778888888888888    888877765 478888


Q ss_pred             CcEEecccccccCCCCCCCCCcccccc-cccccCCCEEEecCCCcccccc
Q 039475          118 LRYLKLSAVEELSETCYCPSLKRLPQG-RGKLINLRHLIFDKDYLAYMAN  166 (286)
Q Consensus       118 Lr~L~L~~~~~LP~~~~~~~l~~LP~~-i~~L~~L~~L~l~~~~~~~lP~  166 (286)
                      |++|+|++          +.++.+|.. +.++++|++|++++|.+.-.+.
T Consensus        80 L~~L~L~~----------N~l~~~~~~~~~~l~~L~~L~L~~N~~~c~c~  119 (170)
T 3g39_A           80 LTQLSLND----------NQLKSIPRGAFDNLKSLTHIWLLNNPWDCACS  119 (170)
T ss_dssp             CCEEECCS----------SCCCCCCTTTTTTCTTCCEEECCSSCBCTTBG
T ss_pred             CCEEECCC----------CccCEeCHHHhcCCCCCCEEEeCCCCCCCCch
Confidence            88888875          667777764 7788888888888887664443

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=99.13  E-value=2.6e-10  Score=91.38  Aligned_cols=113  Identities=24%  Similarity=0.353  Sum_probs=95.1

Q ss_pred             ccCCceEEEeecCCCCCCch-hhhcCCCCcEEEeccCCCCCCCcCccchhhhcCCCCCcEEEeecccCCccCcccCcc-c
Q 039475           35 CQEKLRHLTLMLGLPTKFPV-SIFDAKKLRSLSLFYDSKGQSAASPVLQGLFDQLTCLRALKIEELWYGDQTIEIPKG-L  112 (286)
Q Consensus        35 ~~~~~r~ls~~~~~~~~~~~-~~~~l~~Lr~L~l~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~i~~lP~~-i  112 (286)
                      .+..++.+.+..+.+..++. .+..+++|++|++.+|.....     .+..|..++.|++|++++    +.+..+|.. +
T Consensus        26 ~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~-----~~~~~~~l~~L~~L~l~~----N~l~~~~~~~~   96 (177)
T 2o6r_A           26 IPSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSL-----PDGVFDKLTKLTILYLHE----NKLQSLPNGVF   96 (177)
T ss_dssp             CCTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCC-----CTTTTTTCTTCCEEECCS----SCCCCCCTTTT
T ss_pred             CCCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEe-----ChhHccCCCccCEEECCC----CCccccCHHHh
Confidence            45689999999988876665 468899999999999986532     556689999999999999    999988875 6


Q ss_pred             cCCCCCcEEecccccccCCCCCCCCCccccccc-ccccCCCEEEecCCCcccccc
Q 039475          113 ENLIHLRYLKLSAVEELSETCYCPSLKRLPQGR-GKLINLRHLIFDKDYLAYMAN  166 (286)
Q Consensus       113 ~~L~~Lr~L~L~~~~~LP~~~~~~~l~~LP~~i-~~L~~L~~L~l~~~~~~~lP~  166 (286)
                      +++.+|++|++++          +.++.+|..+ .++++|++|++++|.+...++
T Consensus        97 ~~l~~L~~L~l~~----------N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~  141 (177)
T 2o6r_A           97 DKLTQLKELALDT----------NQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP  141 (177)
T ss_dssp             TTCTTCCEEECCS----------SCCSCCCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred             hCCcccCEEECcC----------CcceEeCHHHhcCCcccCEEEecCCCeeccCc
Confidence            9999999999996          7788888764 889999999999998875443

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=99.11  E-value=2.1e-10  Score=92.09  Aligned_cols=101  Identities=20%  Similarity=0.281  Sum_probs=85.9

Q ss_pred             cEEEeccCCCCCCCcCccchhhhcCCCCCcEEEeecccCCccCccc-CccccCCCCCcEEecccccccCCCCCCCCCccc
Q 039475           63 RSLSLFYDSKGQSAASPVLQGLFDQLTCLRALKIEELWYGDQTIEI-PKGLENLIHLRYLKLSAVEELSETCYCPSLKRL  141 (286)
Q Consensus        63 r~L~l~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~i~~l-P~~i~~L~~Lr~L~L~~~~~LP~~~~~~~l~~L  141 (286)
                      +.+++.++....      +|..+  ...|++|+|++    +.+..+ |..++++++|++|+|++          +.++.+
T Consensus        15 ~~l~~~~n~l~~------iP~~~--~~~L~~L~Ls~----N~l~~~~~~~~~~l~~L~~L~Ls~----------N~l~~i   72 (174)
T 2r9u_A           15 TLVNCQNIRLAS------VPAGI--PTDKQRLWLNN----NQITKLEPGVFDHLVNLQQLYFNS----------NKLTAI   72 (174)
T ss_dssp             SEEECCSSCCSS------CCSCC--CTTCSEEECCS----SCCCCCCTTTTTTCTTCCEEECCS----------SCCCCC
T ss_pred             cEEEeCCCCCCc------cCCCc--CCCCcEEEeCC----CCccccCHHHhcCCcCCCEEECCC----------CCCCcc
Confidence            678888887643      55544  37899999999    999987 56889999999999996          789999


Q ss_pred             ccc-cccccCCCEEEecCCCccccccc-cccccccccccccccccc
Q 039475          142 PQG-RGKLINLRHLIFDKDYLAYMANG-FERLTSLRTLSGFTVARV  185 (286)
Q Consensus       142 P~~-i~~L~~L~~L~l~~~~~~~lP~~-i~~L~~L~~L~~~~~~~~  185 (286)
                      |.. ++++++|++|++++|.+..+|.+ |+.+++|++|++..+...
T Consensus        73 ~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~~~  118 (174)
T 2r9u_A           73 PTGVFDKLTQLTQLDLNDNHLKSIPRGAFDNLKSLTHIYLYNNPWD  118 (174)
T ss_dssp             CTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCBC
T ss_pred             ChhHhCCcchhhEEECCCCccceeCHHHhccccCCCEEEeCCCCcc
Confidence            876 58999999999999999999987 999999999998877543

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=99.07  E-value=3.7e-10  Score=90.23  Aligned_cols=102  Identities=23%  Similarity=0.275  Sum_probs=85.9

Q ss_pred             CcEEEeccCCCCCCCcCccchhhhcCCCCCcEEEeecccCCccCccc-CccccCCCCCcEEecccccccCCCCCCCCCcc
Q 039475           62 LRSLSLFYDSKGQSAASPVLQGLFDQLTCLRALKIEELWYGDQTIEI-PKGLENLIHLRYLKLSAVEELSETCYCPSLKR  140 (286)
Q Consensus        62 Lr~L~l~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~i~~l-P~~i~~L~~Lr~L~L~~~~~LP~~~~~~~l~~  140 (286)
                      .++++++++....      +|..+  .+.|++|+|++    |.+..+ |..++++.+|++|+|++          +.++.
T Consensus        11 ~~~l~~s~n~l~~------ip~~~--~~~l~~L~L~~----N~i~~~~~~~~~~l~~L~~L~Ls~----------N~l~~   68 (170)
T 3g39_A           11 GTTVDCSGKSLAS------VPTGI--PTTTQVLYLYD----NQITKLEPGVFDRLTQLTRLDLDN----------NQLTV   68 (170)
T ss_dssp             TTEEECTTSCCSS------CCSCC--CTTCSEEECCS----SCCCCCCTTTTTTCTTCSEEECCS----------SCCCC
T ss_pred             CCEEEeCCCCcCc------cCccC--CCCCcEEEcCC----CcCCccChhhhcCcccCCEEECCC----------CCcCc
Confidence            4688888887643      55443  47899999999    999988 56799999999999996          77888


Q ss_pred             cccc-cccccCCCEEEecCCCccccccc-cccccccccccccccccc
Q 039475          141 LPQG-RGKLINLRHLIFDKDYLAYMANG-FERLTSLRTLSGFTVARV  185 (286)
Q Consensus       141 LP~~-i~~L~~L~~L~l~~~~~~~lP~~-i~~L~~L~~L~~~~~~~~  185 (286)
                      +|.. +.++++|++|++++|.+..+|.+ |+.+++|++|++..+...
T Consensus        69 l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~  115 (170)
T 3g39_A           69 LPAGVFDKLTQLTQLSLNDNQLKSIPRGAFDNLKSLTHIWLLNNPWD  115 (170)
T ss_dssp             CCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred             cChhhccCCCCCCEEECCCCccCEeCHHHhcCCCCCCEEEeCCCCCC
Confidence            8876 58999999999999999999876 999999999998877543

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=99.00  E-value=2.5e-10  Score=108.11  Aligned_cols=173  Identities=14%  Similarity=0.089  Sum_probs=87.8

Q ss_pred             hcCCCCcEEEeccCCCCCCCcCccchhhhcCCCCCcEEEeecccCCccCcccCccccCCCCCcEEeccc-c-----cccC
Q 039475           57 FDAKKLRSLSLFYDSKGQSAASPVLQGLFDQLTCLRALKIEELWYGDQTIEIPKGLENLIHLRYLKLSA-V-----EELS  130 (286)
Q Consensus        57 ~~l~~Lr~L~l~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~i~~lP~~i~~L~~Lr~L~L~~-~-----~~LP  130 (286)
                      ..+++|++|++.++...... ...++..+.+++.|++|++++    +.+..+|..++++.+|++|+++. .     ...+
T Consensus       189 ~~~~~L~~L~L~~n~~~~~~-~~~l~~~~~~~~~L~~L~L~~----~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~  263 (592)
T 3ogk_B          189 QHNTSLEVLNFYMTEFAKIS-PKDLETIARNCRSLVSVKVGD----FEILELVGFFKAAANLEEFCGGSLNEDIGMPEKY  263 (592)
T ss_dssp             HHCCCCCEEECTTCCCSSCC-HHHHHHHHHHCTTCCEEECSS----CBGGGGHHHHHHCTTCCEEEECBCCCCTTCTTSS
T ss_pred             hcCCCccEEEeeccCCCccC-HHHHHHHHhhCCCCcEEeccC----ccHHHHHHHHhhhhHHHhhcccccccccchHHHH
Confidence            34555555555555432100 001444556667777777777    66666666667777777777753 1     1111


Q ss_pred             CC-CCCCCC----------cccccccccccCCCEEEecCCCccc--ccccccccccccccccccccccCCccCCCCCCcc
Q 039475          131 ET-CYCPSL----------KRLPQGRGKLINLRHLIFDKDYLAY--MANGFERLTSLRTLSGFTVARVGGKYSSEACNLE  197 (286)
Q Consensus       131 ~~-~~~~~l----------~~LP~~i~~L~~L~~L~l~~~~~~~--lP~~i~~L~~L~~L~~~~~~~~~~~~~~~~~~~~  197 (286)
                      .. ..+.++          ..+|..+..+++|++|++++|.+..  ++.-++.+++|++|.+.....        ...+.
T Consensus       264 ~~l~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~~--------~~~l~  335 (592)
T 3ogk_B          264 MNLVFPRKLCRLGLSYMGPNEMPILFPFAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLETRNVIG--------DRGLE  335 (592)
T ss_dssp             SCCCCCTTCCEEEETTCCTTTGGGGGGGGGGCCEEEETTCCCCHHHHHHHHTTCTTCCEEEEEGGGH--------HHHHH
T ss_pred             HHhhccccccccCccccchhHHHHHHhhcCCCcEEecCCCcCCHHHHHHHHHhCcCCCEEeccCccC--------HHHHH
Confidence            11 122222          2345556666777777777665442  222256666777766652211        11111


Q ss_pred             c-ccCcccccceeEEcc----------cCCcccchhhhhhcCCCCCCceEEEEeCCCC
Q 039475          198 G-LRNLNHLRQFLRICG----------LGNLQMRLKINAHLEKKKNLVHLTLDFDKGE  244 (286)
Q Consensus       198 ~-l~~L~~L~~~L~i~~----------l~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~  244 (286)
                      . ...+++|+ .|.+.+          ...+. ...+......+++|++|+++++..+
T Consensus       336 ~~~~~~~~L~-~L~L~~g~~~~~~~~~~~~~~-~~~~~~l~~~~~~L~~L~l~~~~l~  391 (592)
T 3ogk_B          336 VLAQYCKQLK-RLRIERGADEQGMEDEEGLVS-QRGLIALAQGCQELEYMAVYVSDIT  391 (592)
T ss_dssp             HHHHHCTTCC-EEEEECCCCSSTTSSTTCCCC-HHHHHHHHHHCTTCSEEEEEESCCC
T ss_pred             HHHHhCCCCC-EEEeecCccccccccccCccC-HHHHHHHHhhCccCeEEEeecCCcc
Confidence            1 13344455 566663          21211 2223333445677888888777665

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=98.99  E-value=1.9e-10  Score=108.91  Aligned_cols=42  Identities=12%  Similarity=0.035  Sum_probs=31.6

Q ss_pred             ccccccccccCCCEEEecCCCccccccccccccccccccccc
Q 039475          140 RLPQGRGKLINLRHLIFDKDYLAYMANGFERLTSLRTLSGFT  181 (286)
Q Consensus       140 ~LP~~i~~L~~L~~L~l~~~~~~~lP~~i~~L~~L~~L~~~~  181 (286)
                      .++..+.++++|++|++.++.+..+|..++++++|++|.+..
T Consensus       211 ~l~~~~~~~~~L~~L~L~~~~~~~l~~~~~~~~~L~~L~l~~  252 (592)
T 3ogk_B          211 DLETIARNCRSLVSVKVGDFEILELVGFFKAAANLEEFCGGS  252 (592)
T ss_dssp             HHHHHHHHCTTCCEEECSSCBGGGGHHHHHHCTTCCEEEECB
T ss_pred             HHHHHHhhCCCCcEEeccCccHHHHHHHHhhhhHHHhhcccc
Confidence            455556777888888888887777777788888888877653

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=98.95  E-value=4.7e-09  Score=93.33  Aligned_cols=138  Identities=12%  Similarity=0.078  Sum_probs=75.9

Q ss_pred             cCCceEEEeecCCC-CCCc-hhhhcCCCCcEE-EeccCCCCCCCcCccchhhhcCCCCCcEEEeecccCCccCcccCc-c
Q 039475           36 QEKLRHLTLMLGLP-TKFP-VSIFDAKKLRSL-SLFYDSKGQSAASPVLQGLFDQLTCLRALKIEELWYGDQTIEIPK-G  111 (286)
Q Consensus        36 ~~~~r~ls~~~~~~-~~~~-~~~~~l~~Lr~L-~l~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~i~~lP~-~  111 (286)
                      ..+.++|.+..+.+ ..++ ..|.++++++.+ .+.++....     +.|..|..++.|++|++++    +.+..+|. .
T Consensus        53 l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~l~~-----l~~~~f~~l~~L~~L~l~~----n~l~~~~~~~  123 (350)
T 4ay9_X           53 FGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLY-----INPEAFQNLPNLQYLLISN----TGIKHLPDVH  123 (350)
T ss_dssp             CTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETTCCE-----ECTTSBCCCTTCCEEEEEE----ECCSSCCCCT
T ss_pred             CCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCCcccc-----cCchhhhhccccccccccc----cccccCCchh
Confidence            35689999998876 3343 356778887764 444555432     1567788999999999998    77766654 2


Q ss_pred             ccCCCCCcEEeccc---ccccCCC-C------------CCCCCcccccccccccCCCEEEecC-CCccccccc-cccccc
Q 039475          112 LENLIHLRYLKLSA---VEELSET-C------------YCPSLKRLPQGRGKLINLRHLIFDK-DYLAYMANG-FERLTS  173 (286)
Q Consensus       112 i~~L~~Lr~L~L~~---~~~LP~~-~------------~~~~l~~LP~~i~~L~~L~~L~l~~-~~~~~lP~~-i~~L~~  173 (286)
                      +....++.+|++.+   +..+|.. +            ..+.++++|..+....+|+.|++.+ |.+..+|.+ |+.+++
T Consensus       124 ~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~~i~~~~f~~~~L~~l~l~~~n~l~~i~~~~f~~l~~  203 (350)
T 4ay9_X          124 KIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNSAFNGTQLDELNLSDNNNLEELPNDVFHGASG  203 (350)
T ss_dssp             TCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCCEECTTSSTTEEEEEEECTTCTTCCCCCTTTTTTEEC
T ss_pred             hcccchhhhhhhccccccccccccchhhcchhhhhhccccccccCCChhhccccchhHHhhccCCcccCCCHHHhccCcc
Confidence            33444455555433   3344432 2            2223444444444444444444432 344444433 344444


Q ss_pred             ccccccccc
Q 039475          174 LRTLSGFTV  182 (286)
Q Consensus       174 L~~L~~~~~  182 (286)
                      |++|++..+
T Consensus       204 L~~LdLs~N  212 (350)
T 4ay9_X          204 PVILDISRT  212 (350)
T ss_dssp             CSEEECTTS
T ss_pred             cchhhcCCC
Confidence            444444433

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=98.84  E-value=1.1e-08  Score=90.56  Aligned_cols=104  Identities=17%  Similarity=0.080  Sum_probs=84.2

Q ss_pred             EEEeecC-CCCCCchhhhcCCCCcEEEecc-CCCCCCCcCccchhhhcCCCCCcEEEeecccCCccCcccCc-cccCCCC
Q 039475           41 HLTLMLG-LPTKFPVSIFDAKKLRSLSLFY-DSKGQSAASPVLQGLFDQLTCLRALKIEELWYGDQTIEIPK-GLENLIH  117 (286)
Q Consensus        41 ~ls~~~~-~~~~~~~~~~~l~~Lr~L~l~~-~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~i~~lP~-~i~~L~~  117 (286)
                      .+....+ ....+|. +..+++|+.|++++ |.....     .+..|.++.+|++|+|++    |.+..+|. .|++|.+
T Consensus        12 ~v~~~~~n~l~~ip~-l~~~~~L~~L~l~~~n~l~~~-----~~~~~~~l~~L~~L~l~~----N~l~~~~~~~~~~l~~   81 (347)
T 2ifg_A           12 GLRCTRDGALDSLHH-LPGAENLTELYIENQQHLQHL-----ELRDLRGLGELRNLTIVK----SGLRFVAPDAFHFTPR   81 (347)
T ss_dssp             CEECCSSCCCTTTTT-SCSCSCCSEEECCSCSSCCEE-----CGGGSCSCCCCSEEECCS----SCCCEECTTGGGSCSC
T ss_pred             EEEcCCCCCCCccCC-CCCCCCeeEEEccCCCCCCCc-----ChhHhccccCCCEEECCC----CccceeCHHHhcCCcC
Confidence            3455555 5667888 99999999999996 776542     567899999999999999    99998765 6799999


Q ss_pred             CcEEecccccccCCCCCCCCCcccccccccccCCCEEEecCCCcccc
Q 039475          118 LRYLKLSAVEELSETCYCPSLKRLPQGRGKLINLRHLIFDKDYLAYM  164 (286)
Q Consensus       118 Lr~L~L~~~~~LP~~~~~~~l~~LP~~i~~L~~L~~L~l~~~~~~~l  164 (286)
                      |++|+|++          +.+..+|..+.....|+.|++.+|.+...
T Consensus        82 L~~L~l~~----------N~l~~~~~~~~~~~~L~~l~l~~N~~~c~  118 (347)
T 2ifg_A           82 LSRLNLSF----------NALESLSWKTVQGLSLQELVLSGNPLHCS  118 (347)
T ss_dssp             CCEEECCS----------SCCSCCCSTTTCSCCCCEEECCSSCCCCC
T ss_pred             CCEEeCCC----------CccceeCHHHcccCCceEEEeeCCCccCC
Confidence            99999996          78889987765544599999999887643

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=98.77  E-value=2e-08  Score=88.93  Aligned_cols=99  Identities=19%  Similarity=0.151  Sum_probs=80.9

Q ss_pred             EEEeccC-CCCCCCcCccchhhhcCCCCCcEEEee-cccCCccCcccC-ccccCCCCCcEEecccccccCCCCCCCCCcc
Q 039475           64 SLSLFYD-SKGQSAASPVLQGLFDQLTCLRALKIE-ELWYGDQTIEIP-KGLENLIHLRYLKLSAVEELSETCYCPSLKR  140 (286)
Q Consensus        64 ~L~l~~~-~~~~~~~~~~~~~~~~~l~~Lr~L~L~-~~~~~~~i~~lP-~~i~~L~~Lr~L~L~~~~~LP~~~~~~~l~~  140 (286)
                      .+++.++ ....      +|. +..+..|++|+|+ .    |.+..+| ..|++|.+|++|+|++          +.++.
T Consensus        12 ~v~~~~~n~l~~------ip~-l~~~~~L~~L~l~~~----n~l~~~~~~~~~~l~~L~~L~l~~----------N~l~~   70 (347)
T 2ifg_A           12 GLRCTRDGALDS------LHH-LPGAENLTELYIENQ----QHLQHLELRDLRGLGELRNLTIVK----------SGLRF   70 (347)
T ss_dssp             CEECCSSCCCTT------TTT-SCSCSCCSEEECCSC----SSCCEECGGGSCSCCCCSEEECCS----------SCCCE
T ss_pred             EEEcCCCCCCCc------cCC-CCCCCCeeEEEccCC----CCCCCcChhHhccccCCCEEECCC----------Cccce
Confidence            4566665 4432      777 8999999999998 6    7799888 5799999999999996          77888


Q ss_pred             ccc-ccccccCCCEEEecCCCccccccc-ccccccccccccccccc
Q 039475          141 LPQ-GRGKLINLRHLIFDKDYLAYMANG-FERLTSLRTLSGFTVAR  184 (286)
Q Consensus       141 LP~-~i~~L~~L~~L~l~~~~~~~lP~~-i~~L~~L~~L~~~~~~~  184 (286)
                      +|. .|++|++|++|+|++|.+..+|++ +..+. |+.|.+..+..
T Consensus        71 ~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~-L~~l~l~~N~~  115 (347)
T 2ifg_A           71 VAPDAFHFTPRLSRLNLSFNALESLSWKTVQGLS-LQELVLSGNPL  115 (347)
T ss_dssp             ECTTGGGSCSCCCEEECCSSCCSCCCSTTTCSCC-CCEEECCSSCC
T ss_pred             eCHHHhcCCcCCCEEeCCCCccceeCHHHcccCC-ceEEEeeCCCc
Confidence            875 679999999999999999999987 44444 99998776654

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=98.72  E-value=1.6e-09  Score=102.62  Aligned_cols=41  Identities=12%  Similarity=0.024  Sum_probs=24.8

Q ss_pred             ccccccccCCCEEEecCCCccc--ccccccccccccccccccc
Q 039475          142 PQGRGKLINLRHLIFDKDYLAY--MANGFERLTSLRTLSGFTV  182 (286)
Q Consensus       142 P~~i~~L~~L~~L~l~~~~~~~--lP~~i~~L~~L~~L~~~~~  182 (286)
                      |..+..+++|++|++++|.+..  ++.-++++++|++|.+..+
T Consensus       282 ~~~~~~~~~L~~L~L~~~~l~~~~l~~~~~~~~~L~~L~l~~~  324 (594)
T 2p1m_B          282 PAVYSVCSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDY  324 (594)
T ss_dssp             GGGHHHHTTCCEEECTTCCCCHHHHHHHHTTCTTCCEEEEEGG
T ss_pred             HHHHHhhCCCCEEEccCCCCCHHHHHHHHhcCCCcCEEeCcCc
Confidence            3334466778888887776542  2222556777777776654

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=98.70  E-value=3.4e-09  Score=100.29  Aligned_cols=83  Identities=17%  Similarity=0.106  Sum_probs=53.1

Q ss_pred             cCCceEEEeecCCCCC-Cchhhh-cCCCCcEEEeccCCCCCCCcCccchhhhcCCCCCcEEEeecccCCccCcc-----c
Q 039475           36 QEKLRHLTLMLGLPTK-FPVSIF-DAKKLRSLSLFYDSKGQSAASPVLQGLFDQLTCLRALKIEELWYGDQTIE-----I  108 (286)
Q Consensus        36 ~~~~r~ls~~~~~~~~-~~~~~~-~l~~Lr~L~l~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~i~~-----l  108 (286)
                      ..+++++.+..+.... .+..+. .+++|++|.+.++.......   ++..+.++++|++|++++    |.+..     +
T Consensus       104 ~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~---l~~~~~~~~~L~~L~L~~----~~i~~~~~~~l  176 (594)
T 2p1m_B          104 YTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGFSTDG---LAAIAATCRNLKELDLRE----SDVDDVSGHWL  176 (594)
T ss_dssp             CTTCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESCEEEEHHH---HHHHHHHCTTCCEEECTT----CEEECCCGGGG
T ss_pred             CCCCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCcCCCCHHH---HHHHHHhCCCCCEEeCcC----CccCCcchHHH
Confidence            3568888888776532 233343 58899999988774211111   455566788899999888    66442     3


Q ss_pred             CccccCCCCCcEEeccc
Q 039475          109 PKGLENLIHLRYLKLSA  125 (286)
Q Consensus       109 P~~i~~L~~Lr~L~L~~  125 (286)
                      +.....+++|++|++++
T Consensus       177 ~~~~~~~~~L~~L~l~~  193 (594)
T 2p1m_B          177 SHFPDTYTSLVSLNISC  193 (594)
T ss_dssp             GGSCTTCCCCCEEECTT
T ss_pred             HHHhhcCCcCcEEEecc
Confidence            33334667888888874

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=98.54  E-value=9.3e-09  Score=92.43  Aligned_cols=168  Identities=17%  Similarity=0.101  Sum_probs=95.5

Q ss_pred             CCCCcEEEeccCCCCCCCcCccchhhhc-CCCCCcEEEeecccCCccCcc--cCccccCCCCCcEEecccccccCCCCCC
Q 039475           59 AKKLRSLSLFYDSKGQSAASPVLQGLFD-QLTCLRALKIEELWYGDQTIE--IPKGLENLIHLRYLKLSAVEELSETCYC  135 (286)
Q Consensus        59 l~~Lr~L~l~~~~~~~~~~~~~~~~~~~-~l~~Lr~L~L~~~~~~~~i~~--lP~~i~~L~~Lr~L~L~~~~~LP~~~~~  135 (286)
                      +++|++|+++++....... ..+...+. ....|++|+|++    |.+..  +..-...+.+|++|+|++          
T Consensus        71 ~~~L~~L~Ls~n~l~~~~~-~~l~~~L~~~~~~L~~L~Ls~----n~l~~~~~~~l~~~L~~L~~L~Ls~----------  135 (372)
T 3un9_A           71 LSSLRQLNLAGVRMTPVKC-TVVAAVLGSGRHALDEVNLAS----CQLDPAGLRTLLPVFLRARKLGLQL----------  135 (372)
T ss_dssp             HTTCCEEECTTSCCCHHHH-HHHHHHHSSCSSCEEEEECTT----CCCCHHHHHHTHHHHHTEEEEECCS----------
T ss_pred             HhhCCEEEecCCCCCHHHH-HHHHHHHhhCCCCceEEEecC----CCCCHHHHHHHHHHHHhccHhhcCC----------
Confidence            4678888888877542110 00222222 236788888888    77642  222223456788888875          


Q ss_pred             CCCccc-----cccc-ccccCCCEEEecCCCccc-----ccccccccccccccccccccccCCccCCCCCCcccccCccc
Q 039475          136 PSLKRL-----PQGR-GKLINLRHLIFDKDYLAY-----MANGFERLTSLRTLSGFTVARVGGKYSSEACNLEGLRNLNH  204 (286)
Q Consensus       136 ~~l~~L-----P~~i-~~L~~L~~L~l~~~~~~~-----lP~~i~~L~~L~~L~~~~~~~~~~~~~~~~~~~~~l~~L~~  204 (286)
                      +.+...     ...+ ...++|++|++++|.+..     ++..+..+++|++|++..+......   .......+...++
T Consensus       136 n~l~~~~~~~L~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g---~~~L~~~L~~~~~  212 (372)
T 3un9_A          136 NSLGPEACKDLRDLLLHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEG---LELLAAQLDRNRQ  212 (372)
T ss_dssp             SCCCHHHHHHHHHHHHSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHH---HHHHHHHGGGCSC
T ss_pred             CCCCHHHHHHHHHHHHhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHH---HHHHHHHHhcCCC
Confidence            345322     2222 235678888888877653     3444567778888877766533100   0001223445556


Q ss_pred             ccceeEEcccCCccc-chhhhhhcCCCCCCceEEEEeCCCCC
Q 039475          205 LRQFLRICGLGNLQM-RLKINAHLEKKKNLVHLTLDFDKGED  245 (286)
Q Consensus       205 L~~~L~i~~l~~~~~-~~~~~~~l~~l~~L~~L~L~~~~~~~  245 (286)
                      |+ .|.+.++.-... ...+...+...++|++|+|++|..++
T Consensus       213 L~-~L~Ls~N~i~~~g~~~l~~~L~~~~~L~~L~Ls~N~i~~  253 (372)
T 3un9_A          213 LQ-ELNVAYNGAGDTAALALARAAREHPSLELLHLYFNELSS  253 (372)
T ss_dssp             CC-EEECCSSCCCHHHHHHHHHHHHHCSSCCEEECTTSSCCH
T ss_pred             cC-eEECCCCCCCHHHHHHHHHHHHhCCCCCEEeccCCCCCH
Confidence            66 677765422111 34555666677888999998888763

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=98.50  E-value=2.9e-07  Score=80.98  Aligned_cols=190  Identities=16%  Similarity=0.071  Sum_probs=115.3

Q ss_pred             CceEEEeecCCCCCCchhhhc-CCCCcEEEeccCCCCC--CC-------------cCccchhhhcC--------CCCCcE
Q 039475           38 KLRHLTLMLGLPTKFPVSIFD-AKKLRSLSLFYDSKGQ--SA-------------ASPVLQGLFDQ--------LTCLRA   93 (286)
Q Consensus        38 ~~r~ls~~~~~~~~~~~~~~~-l~~Lr~L~l~~~~~~~--~~-------------~~~~~~~~~~~--------l~~Lr~   93 (286)
                      ++.+|.+..+-...-...+.. +++|++|+++++....  ..             ...+.+..|.+        +..|+.
T Consensus        26 ~l~~L~l~g~i~~~~~~~l~~~l~~L~~LdLs~n~i~~~~~~~~~~~~~~~~~~~~~~I~~~aF~~~~~~~~~g~~~L~~  105 (329)
T 3sb4_A           26 SITHLTLTGKLNAEDFRHLRDEFPSLKVLDISNAEIKMYSGKAGTYPNGKFYIYMANFVPAYAFSNVVNGVTKGKQTLEK  105 (329)
T ss_dssp             HCSEEEEEEEECHHHHHHHHHSCTTCCEEEEEEEEECCEEESSSSSGGGCCEEECTTEECTTTTEEEETTEEEECTTCCC
T ss_pred             ceeEEEEeccccHHHHHHHHHhhccCeEEecCcceeEEecCccccccccccccccccccCHHHhcccccccccccCCCcE
Confidence            456666654321111122333 6778888887776430  00             00113345667        888888


Q ss_pred             EEeecccCCccCcccCc-cccCCCCCcEEeccc--ccccCCC-C-CCCCCccccccc-----------------------
Q 039475           94 LKIEELWYGDQTIEIPK-GLENLIHLRYLKLSA--VEELSET-C-YCPSLKRLPQGR-----------------------  145 (286)
Q Consensus        94 L~L~~~~~~~~i~~lP~-~i~~L~~Lr~L~L~~--~~~LP~~-~-~~~~l~~LP~~i-----------------------  145 (286)
                      |+|..     .+..+++ ++.++.+|+.+++..  +..++.. + +|..+..+|...                       
T Consensus       106 l~L~~-----~i~~I~~~aF~~~~~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~~~~~L~~  180 (329)
T 3sb4_A          106 VILSE-----KIKNIEDAAFKGCDNLKICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFIEGEPLET  180 (329)
T ss_dssp             -CBCT-----TCCEECTTTTTTCTTCCEEEBCCSSCCEECTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCEEESCCCEE
T ss_pred             EECCc-----cccchhHHHhhcCcccceEEcCCCCccccchhhhcCCCceEEecCcchhhhhccccccccccccccccce
Confidence            88865     2445554 577888888888877  6666666 4 554444444221                       


Q ss_pred             ------------------------------------------ccccCCCEEEecCCCccccccc-ccccccccccccccc
Q 039475          146 ------------------------------------------GKLINLRHLIFDKDYLAYMANG-FERLTSLRTLSGFTV  182 (286)
Q Consensus       146 ------------------------------------------~~L~~L~~L~l~~~~~~~lP~~-i~~L~~L~~L~~~~~  182 (286)
                                                                ..+++|+.+++.+|++..+|.+ |..+++|+++.+...
T Consensus       181 ~i~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~l~~~~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n  260 (329)
T 3sb4_A          181 TIQVGAMGKLEDEIMKAGLQPRDINFLTIEGKLDNADFKLIRDYMPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN  260 (329)
T ss_dssp             EEEECTTCCHHHHHHHTTCCGGGCSEEEEEECCCHHHHHHHHHHCTTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT
T ss_pred             eEEecCCCcHHHHHhhcccCccccceEEEeeeecHHHHHHHHHhcCCCeEEECCCCCcceecHhhhhCCCCCCEEECCcc
Confidence                                                      0267999999999999999987 999999999987553


Q ss_pred             cccCCccCCCCCCcccccCcccccceeEEcccCCcccchhhhhhcCCCCCCceEEEEeCCCC
Q 039475          183 ARVGGKYSSEACNLEGLRNLNHLRQFLRICGLGNLQMRLKINAHLEKKKNLVHLTLDFDKGE  244 (286)
Q Consensus       183 ~~~~~~~~~~~~~~~~l~~L~~L~~~L~i~~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~  244 (286)
                      - .       .-.-..+.++.+|++.+.+.+  .+.  ......+..+++|+.++++.|...
T Consensus       261 i-~-------~I~~~aF~~~~~L~~~l~l~~--~l~--~I~~~aF~~c~~L~~l~l~~n~i~  310 (329)
T 3sb4_A          261 L-K-------TIGQRVFSNCGRLAGTLELPA--SVT--AIEFGAFMGCDNLRYVLATGDKIT  310 (329)
T ss_dssp             C-C-------EECTTTTTTCTTCCEEEEECT--TCC--EECTTTTTTCTTEEEEEECSSCCC
T ss_pred             c-c-------eehHHHhhCChhccEEEEEcc--cce--EEchhhhhCCccCCEEEeCCCccC
Confidence            1 1       112223455555542355542  221  222367889999999999888765

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=98.28  E-value=9.1e-07  Score=79.07  Aligned_cols=186  Identities=16%  Similarity=0.118  Sum_probs=108.5

Q ss_pred             CCceEEEeecCCCC--C-------CchhhhcCCCCcEEEeccCCCCCCCc----CccchhhhcCCCCCcEEEeecccCCc
Q 039475           37 EKLRHLTLMLGLPT--K-------FPVSIFDAKKLRSLSLFYDSKGQSAA----SPVLQGLFDQLTCLRALKIEELWYGD  103 (286)
Q Consensus        37 ~~~r~ls~~~~~~~--~-------~~~~~~~l~~Lr~L~l~~~~~~~~~~----~~~~~~~~~~l~~Lr~L~L~~~~~~~  103 (286)
                      ..++.+.+......  .       +..+...+++||+|.+.+........    ...+...+..++.|+.|.|++    +
T Consensus       107 ~~v~~L~lg~~~~~~~~~~~~~~~L~~s~~~l~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~~~P~L~~L~L~g----~  182 (362)
T 2ra8_A          107 PSLKQITIGXWGYEGEDCSDIADGIVENKEKFAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKG----T  182 (362)
T ss_dssp             GGCSEEEECCCCSSSCCSHHHHHHHHTTHHHHTTCSEEEECCCCTTTCCGGGCBCCBCHHHHHTCTTCCEEEEEC----C
T ss_pred             hhcceEEEcccccCCCcHHHHHHHHHHhhhhcchhhheeecCcchhhcccccccccCHHHHHhcCCCCcEEEEeC----C
Confidence            34677777654432  1       12335578899999986653211000    011667788899999999998    6


Q ss_pred             cCcccCccccCCCCCcEEecccccccCCCCCCCCCcc-ccccc--ccccCCCEEEecC--CC------cccccccc--cc
Q 039475          104 QTIEIPKGLENLIHLRYLKLSAVEELSETCYCPSLKR-LPQGR--GKLINLRHLIFDK--DY------LAYMANGF--ER  170 (286)
Q Consensus       104 ~i~~lP~~i~~L~~Lr~L~L~~~~~LP~~~~~~~l~~-LP~~i--~~L~~L~~L~l~~--~~------~~~lP~~i--~~  170 (286)
                      .-..+|. +. +.+|+.|+|..          ..+.. -...+  .++++|++|++..  +.      +..+...+  +.
T Consensus       183 ~~l~l~~-~~-~~~L~~L~L~~----------~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~~~~  250 (362)
T 2ra8_A          183 NNLSIGK-KP-RPNLKSLEIIS----------GGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDR  250 (362)
T ss_dssp             BTCBCCS-CB-CTTCSEEEEEC----------SBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTGGGSCTTT
T ss_pred             CCceecc-cc-CCCCcEEEEec----------CCCChHHHHHHHHccCCCCcEEEEeccccccccchhHHHHHHHHhcCC
Confidence            4234554 43 88999999973          22321 11223  3788999999852  11      11221222  34


Q ss_pred             cccccccccccccccCCccCCCCCCcccccCcccccceeEEcccCCccc--chhhhhhcCCCCCCceEEEEeCCCC
Q 039475          171 LTSLRTLSGFTVARVGGKYSSEACNLEGLRNLNHLRQFLRICGLGNLQM--RLKINAHLEKKKNLVHLTLDFDKGE  244 (286)
Q Consensus       171 L~~L~~L~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~~L~i~~l~~~~~--~~~~~~~l~~l~~L~~L~L~~~~~~  244 (286)
                      +++|++|.+..+.....    ....+.+.+.+++|+ .|.+... .+..  ...+...+..+++|+.|+|+.|..+
T Consensus       251 ~p~Lr~L~L~~~~i~~~----~~~~la~a~~~~~L~-~LdLs~n-~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~  320 (362)
T 2ra8_A          251 FPNLKWLGIVDAEEQNV----VVEMFLESDILPQLE-TMDISAG-VLTDEGARLLLDHVDKIKHLKFINMKYNYLS  320 (362)
T ss_dssp             CTTCCEEEEESCTTHHH----HHHHHHHCSSGGGCS-EEECCSS-CCBHHHHHHHHTTHHHHTTCSEEECCSBBCC
T ss_pred             CCCcCEEeCCCCCCchH----HHHHHHhCccCCCCC-EEECCCC-CCChHHHHHHHhhcccCCcceEEECCCCcCC
Confidence            67899988876543210    011222334567777 7887542 2222  2344445566789999999988766

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=98.16  E-value=1.7e-06  Score=77.29  Aligned_cols=187  Identities=12%  Similarity=0.113  Sum_probs=108.7

Q ss_pred             CCCCcEEEeccCCCCCCC---cCccchhhhcCCCCCcEEEeecccCCccC----------cccCccccCCCCCcEEeccc
Q 039475           59 AKKLRSLSLFYDSKGQSA---ASPVLQGLFDQLTCLRALKIEELWYGDQT----------IEIPKGLENLIHLRYLKLSA  125 (286)
Q Consensus        59 l~~Lr~L~l~~~~~~~~~---~~~~~~~~~~~l~~Lr~L~L~~~~~~~~i----------~~lP~~i~~L~~Lr~L~L~~  125 (286)
                      ..+++.|.+.........   .-..+......+++|+.|.+.+    ...          ..++..+..+++|+.|+|++
T Consensus       106 ~~~v~~L~lg~~~~~~~~~~~~~~~L~~s~~~l~~L~~L~l~~----~~~e~~~is~~~~~~L~~ll~~~P~L~~L~L~g  181 (362)
T 2ra8_A          106 LPSLKQITIGXWGYEGEDCSDIADGIVENKEKFAHFEGLFWGD----IDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKG  181 (362)
T ss_dssp             GGGCSEEEECCCCSSSCCSHHHHHHHHTTHHHHTTCSEEEECC----CCTTTCCGGGCBCCBCHHHHHTCTTCCEEEEEC
T ss_pred             chhcceEEEcccccCCCcHHHHHHHHHHhhhhcchhhheeecC----cchhhcccccccccCHHHHHhcCCCCcEEEEeC
Confidence            456778887754432100   0000233355788999999976    321          13445567789999999985


Q ss_pred             ccccCCCCCCCCCcccccccccccCCCEEEecCCCccc-cccccc--ccccccccccccccccCCccCCCCCCc---cc-
Q 039475          126 VEELSETCYCPSLKRLPQGRGKLINLRHLIFDKDYLAY-MANGFE--RLTSLRTLSGFTVARVGGKYSSEACNL---EG-  198 (286)
Q Consensus       126 ~~~LP~~~~~~~l~~LP~~i~~L~~L~~L~l~~~~~~~-lP~~i~--~L~~L~~L~~~~~~~~~~~~~~~~~~~---~~-  198 (286)
                               +..+ .+|. + .+.+|++|++..+.+.. ....++  .+++|++|.++.......    ....+   .. 
T Consensus       182 ---------~~~l-~l~~-~-~~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~----~~~~~~~l~~~  245 (362)
T 2ra8_A          182 ---------TNNL-SIGK-K-PRPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYG----FDGDMNVFRPL  245 (362)
T ss_dssp             ---------CBTC-BCCS-C-BCTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGT----CCSCGGGTGGG
T ss_pred             ---------CCCc-eecc-c-cCCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccc----cchhHHHHHHH
Confidence                     3223 4554 4 38899999998876542 222343  788999998753211100    01111   11 


Q ss_pred             c--cCcccccceeEEcccCCcccchhhhhhcCCCCCCceEEEEeCCCCCCccchhhccccccchhhHHHHHHHHHhcCCC
Q 039475          199 L--RNLNHLRQFLRICGLGNLQMRLKINAHLEKKKNLVHLTLDFDKGEDEEDEDYEEAPNLMNEENEAKQEAICEALQAP  276 (286)
Q Consensus       199 l--~~L~~L~~~L~i~~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~  276 (286)
                      +  ..+++|+ .|.+.++...............+++|+.|+|++|..++.                  ....+.+.|+++
T Consensus       246 l~~~~~p~Lr-~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~------------------G~~~L~~~L~~l  306 (362)
T 2ra8_A          246 FSKDRFPNLK-WLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDE------------------GARLLLDHVDKI  306 (362)
T ss_dssp             SCTTTCTTCC-EEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHH------------------HHHHHHTTHHHH
T ss_pred             HhcCCCCCcC-EEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChH------------------HHHHHHhhcccC
Confidence            1  2456777 788875432211111112224688999999999887631                  345667777767


Q ss_pred             CCcccCCC
Q 039475          277 PNIVIRNN  284 (286)
Q Consensus       277 ~~L~~l~~  284 (286)
                      ++|+.|+.
T Consensus       307 ~~L~~L~L  314 (362)
T 2ra8_A          307 KHLKFINM  314 (362)
T ss_dssp             TTCSEEEC
T ss_pred             CcceEEEC
Confidence            78888763

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=98.13  E-value=4.1e-06  Score=73.53  Aligned_cols=33  Identities=24%  Similarity=0.326  Sum_probs=17.7

Q ss_pred             CCCCcEEEeecccCCccCcccCc-cccCCCCCcEEecc
Q 039475           88 LTCLRALKIEELWYGDQTIEIPK-GLENLIHLRYLKLS  124 (286)
Q Consensus        88 l~~Lr~L~L~~~~~~~~i~~lP~-~i~~L~~Lr~L~L~  124 (286)
                      +..|+.|+|++    +.+..+|+ .|.++.+|+.+++.
T Consensus       225 ~~~L~~l~L~~----n~i~~I~~~aF~~~~~L~~l~l~  258 (329)
T 3sb4_A          225 MPNLVSLDISK----TNATTIPDFTFAQKKYLLKIKLP  258 (329)
T ss_dssp             CTTCCEEECTT----BCCCEECTTTTTTCTTCCEEECC
T ss_pred             cCCCeEEECCC----CCcceecHhhhhCCCCCCEEECC
Confidence            45555555555    55555554 34555555555554

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=98.13  E-value=2.7e-07  Score=82.81  Aligned_cols=161  Identities=18%  Similarity=0.180  Sum_probs=103.1

Q ss_pred             CCCCcEEEeecccCCccCcc-----cCcccc-CCCCCcEEecccccccCCCCCCCCCcc--cccccccccCCCEEEecCC
Q 039475           88 LTCLRALKIEELWYGDQTIE-----IPKGLE-NLIHLRYLKLSAVEELSETCYCPSLKR--LPQGRGKLINLRHLIFDKD  159 (286)
Q Consensus        88 l~~Lr~L~L~~~~~~~~i~~-----lP~~i~-~L~~Lr~L~L~~~~~LP~~~~~~~l~~--LP~~i~~L~~L~~L~l~~~  159 (286)
                      ++.|++|+|++    +.+..     +...+. ...+|++|+|++          +.+..  +..-...+.+|++|++++|
T Consensus        71 ~~~L~~L~Ls~----n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~----------n~l~~~~~~~l~~~L~~L~~L~Ls~n  136 (372)
T 3un9_A           71 LSSLRQLNLAG----VRMTPVKCTVVAAVLGSGRHALDEVNLAS----------CQLDPAGLRTLLPVFLRARKLGLQLN  136 (372)
T ss_dssp             HTTCCEEECTT----SCCCHHHHHHHHHHHSSCSSCEEEEECTT----------CCCCHHHHHHTHHHHHTEEEEECCSS
T ss_pred             HhhCCEEEecC----CCCCHHHHHHHHHHHhhCCCCceEEEecC----------CCCCHHHHHHHHHHHHhccHhhcCCC
Confidence            46799999999    88763     222333 337999999996          44542  2222345678999999999


Q ss_pred             Ccccccc-cc-----cccccccccccccccccCCccCCCCCCcccccCcccccceeEEcccCCccc-chhhhhhcCCCCC
Q 039475          160 YLAYMAN-GF-----ERLTSLRTLSGFTVARVGGKYSSEACNLEGLRNLNHLRQFLRICGLGNLQM-RLKINAHLEKKKN  232 (286)
Q Consensus       160 ~~~~lP~-~i-----~~L~~L~~L~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~~L~i~~l~~~~~-~~~~~~~l~~l~~  232 (286)
                      .+..... .+     ...++|++|++..+......   .......+...++|+ .|.+.+..-... ...++..+...++
T Consensus       137 ~l~~~~~~~L~~~L~~~~~~L~~L~Ls~n~l~~~~---~~~l~~~L~~~~~L~-~L~Ls~N~l~~~g~~~L~~~L~~~~~  212 (372)
T 3un9_A          137 SLGPEACKDLRDLLLHDQCQITTLRLSNNPLTAAG---VAVLMEGLAGNTSVT-HLSLLHTGLGDEGLELLAAQLDRNRQ  212 (372)
T ss_dssp             CCCHHHHHHHHHHHHSTTCCCCEEECCSSCCHHHH---HHHHHHHHHTCSSCC-EEECTTSSCHHHHHHHHHHHGGGCSC
T ss_pred             CCCHHHHHHHHHHHHhcCCccceeeCCCCCCChHH---HHHHHHHHhcCCCcC-EEeCCCCCCCcHHHHHHHHHHhcCCC
Confidence            8864322 23     24578999998877543100   001122335566677 788876532111 3455677888889


Q ss_pred             CceEEEEeCCCCCCccchhhccccccchhhHHHHHHHHHhcCCCCCcccCCC
Q 039475          233 LVHLTLDFDKGEDEEDEDYEEAPNLMNEENEAKQEAICEALQAPPNIVIRNN  284 (286)
Q Consensus       233 L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~L~~l~~  284 (286)
                      |+.|+|++|..++.                  ....+.+.|..+++|++||.
T Consensus       213 L~~L~Ls~N~i~~~------------------g~~~l~~~L~~~~~L~~L~L  246 (372)
T 3un9_A          213 LQELNVAYNGAGDT------------------AALALARAAREHPSLELLHL  246 (372)
T ss_dssp             CCEEECCSSCCCHH------------------HHHHHHHHHHHCSSCCEEEC
T ss_pred             cCeEECCCCCCCHH------------------HHHHHHHHHHhCCCCCEEec
Confidence            99999999998731                  33455666666677877763

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=98.12  E-value=3e-05  Score=70.16  Aligned_cols=161  Identities=9%  Similarity=0.033  Sum_probs=81.4

Q ss_pred             CCCcEEEeccCCCCCCCcCccchhhhcCCCCCcEEEeecccCCccCcccCccccCCCCCcEEeccc-ccccCCC-C-CCC
Q 039475           60 KKLRSLSLFYDSKGQSAASPVLQGLFDQLTCLRALKIEELWYGDQTIEIPKGLENLIHLRYLKLSA-VEELSET-C-YCP  136 (286)
Q Consensus        60 ~~Lr~L~l~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~i~~lP~~i~~L~~Lr~L~L~~-~~~LP~~-~-~~~  136 (286)
                      .+|+.+.+.++-..      +-...|.++..|+.+++.+    +.+..+|...-....|+.+.+.. ++.++.. + +|.
T Consensus       157 ~~L~~i~lp~~l~~------I~~~aF~~c~~L~~l~l~~----n~l~~I~~~aF~~~~L~~l~lp~~l~~I~~~aF~~~~  226 (401)
T 4fdw_A          157 STVQEIVFPSTLEQ------LKEDIFYYCYNLKKADLSK----TKITKLPASTFVYAGIEEVLLPVTLKEIGSQAFLKTS  226 (401)
T ss_dssp             CCCCEEECCTTCCE------ECSSTTTTCTTCCEEECTT----SCCSEECTTTTTTCCCSEEECCTTCCEECTTTTTTCT
T ss_pred             CCceEEEeCCCccE------ehHHHhhCcccCCeeecCC----CcceEechhhEeecccCEEEeCCchheehhhHhhCCC
Confidence            36777777653211      1445677788888888877    66665554332234555555544 4444444 3 333


Q ss_pred             CCc-------------------------------ccc-cccccccCCCEEEecCCCcc-----ccccc-ccccccccccc
Q 039475          137 SLK-------------------------------RLP-QGRGKLINLRHLIFDKDYLA-----YMANG-FERLTSLRTLS  178 (286)
Q Consensus       137 ~l~-------------------------------~LP-~~i~~L~~L~~L~l~~~~~~-----~lP~~-i~~L~~L~~L~  178 (286)
                      .++                               .++ ..|.++++|+.+.+.++.+.     .++.+ |..+++|+.+.
T Consensus       227 ~L~~l~l~~~l~~I~~~aF~~~~L~~i~lp~~i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~  306 (401)
T 4fdw_A          227 QLKTIEIPENVSTIGQEAFRESGITTVKLPNGVTNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFE  306 (401)
T ss_dssp             TCCCEECCTTCCEECTTTTTTCCCSEEEEETTCCEECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEEC
T ss_pred             CCCEEecCCCccCccccccccCCccEEEeCCCccEEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEE
Confidence            332                               121 23445555666655554332     34433 55555565554


Q ss_pred             cccccccCCccCCCCCCcccccCcccccceeEEcccCCcccchhhhhhcCCCCCCceEEEEeCCCC
Q 039475          179 GFTVARVGGKYSSEACNLEGLRNLNHLRQFLRICGLGNLQMRLKINAHLEKKKNLVHLTLDFDKGE  244 (286)
Q Consensus       179 ~~~~~~~~~~~~~~~~~~~~l~~L~~L~~~L~i~~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~  244 (286)
                      +... ..       .-.-..+.++++|+ .+.+..  ++..  .....+..+ +|+.+.+..|...
T Consensus       307 l~~~-i~-------~I~~~aF~~c~~L~-~l~lp~--~l~~--I~~~aF~~~-~L~~l~l~~n~~~  358 (401)
T 4fdw_A          307 IPES-IR-------ILGQGLLGGNRKVT-QLTIPA--NVTQ--INFSAFNNT-GIKEVKVEGTTPP  358 (401)
T ss_dssp             CCTT-CC-------EECTTTTTTCCSCC-EEEECT--TCCE--ECTTSSSSS-CCCEEEECCSSCC
T ss_pred             eCCc-eE-------EEhhhhhcCCCCcc-EEEECc--cccE--EcHHhCCCC-CCCEEEEcCCCCc
Confidence            4311 00       11112344455555 555532  1211  123457777 8999999887543

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=97.95  E-value=7.9e-05  Score=67.38  Aligned_cols=98  Identities=10%  Similarity=0.119  Sum_probs=67.9

Q ss_pred             hhhhcCCCCcEEEeccCCCCCCCcCccchhhhcCCCCCcEEEeecccCCccCcccC-ccccCCCCCcEEeccc--ccccC
Q 039475           54 VSIFDAKKLRSLSLFYDSKGQSAASPVLQGLFDQLTCLRALKIEELWYGDQTIEIP-KGLENLIHLRYLKLSA--VEELS  130 (286)
Q Consensus        54 ~~~~~l~~Lr~L~l~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~i~~lP-~~i~~L~~Lr~L~L~~--~~~LP  130 (286)
                      ..|.+ .+|+.+.+..+-..      +-..+|.+. .|+.+.+.+     .+..++ ..+.++.+|+.+++..  +..+|
T Consensus       130 ~aF~~-~~L~~i~l~~~i~~------I~~~aF~~~-~L~~i~lp~-----~l~~I~~~aF~~c~~L~~l~l~~n~l~~I~  196 (401)
T 4fdw_A          130 DAFRN-SQIAKVVLNEGLKS------IGDMAFFNS-TVQEIVFPS-----TLEQLKEDIFYYCYNLKKADLSKTKITKLP  196 (401)
T ss_dssp             TTTTT-CCCSEEECCTTCCE------ECTTTTTTC-CCCEEECCT-----TCCEECSSTTTTCTTCCEEECTTSCCSEEC
T ss_pred             hhccc-CCccEEEeCCCccE------ECHHhcCCC-CceEEEeCC-----CccEehHHHhhCcccCCeeecCCCcceEec
Confidence            34555 47999998766321      144567774 699999866     355555 4789999999999986  89999


Q ss_pred             CC-CCCCCCccc--cc--------ccccccCCCEEEecCCCccccc
Q 039475          131 ET-CYCPSLKRL--PQ--------GRGKLINLRHLIFDKDYLAYMA  165 (286)
Q Consensus       131 ~~-~~~~~l~~L--P~--------~i~~L~~L~~L~l~~~~~~~lP  165 (286)
                      .. +.|..++.+  |.        .|.++.+|+.+++..+ +..++
T Consensus       197 ~~aF~~~~L~~l~lp~~l~~I~~~aF~~~~~L~~l~l~~~-l~~I~  241 (401)
T 4fdw_A          197 ASTFVYAGIEEVLLPVTLKEIGSQAFLKTSQLKTIEIPEN-VSTIG  241 (401)
T ss_dssp             TTTTTTCCCSEEECCTTCCEECTTTTTTCTTCCCEECCTT-CCEEC
T ss_pred             hhhEeecccCEEEeCCchheehhhHhhCCCCCCEEecCCC-ccCcc
Confidence            98 767666532  32        4567788998888653 34443

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=97.73  E-value=2.6e-05  Score=66.57  Aligned_cols=82  Identities=22%  Similarity=0.316  Sum_probs=60.5

Q ss_pred             cCCCCCcEEEeecccCCccCcc---cCccccCCCCCcEEecccccccCCCCCCCCCccccccccccc--CCCEEEecCCC
Q 039475           86 DQLTCLRALKIEELWYGDQTIE---IPKGLENLIHLRYLKLSAVEELSETCYCPSLKRLPQGRGKLI--NLRHLIFDKDY  160 (286)
Q Consensus        86 ~~l~~Lr~L~L~~~~~~~~i~~---lP~~i~~L~~Lr~L~L~~~~~LP~~~~~~~l~~LP~~i~~L~--~L~~L~l~~~~  160 (286)
                      .+++.|++|+|++    |.+..   +|..++.+++|++|+|++          +.+..+ ..+..+.  +|++|++.+|.
T Consensus       167 ~~l~~L~~L~Ls~----N~l~~l~~l~~~~~~l~~L~~L~Ls~----------N~i~~~-~~l~~l~~l~L~~L~L~~Np  231 (267)
T 3rw6_A          167 ENIPELLSLNLSN----NRLYRLDDMSSIVQKAPNLKILNLSG----------NELKSE-RELDKIKGLKLEELWLDGNS  231 (267)
T ss_dssp             HHCTTCCEEECTT----SCCCCCGGGTTHHHHSTTCCEEECTT----------SCCCSG-GGGGGGTTSCCSEEECTTST
T ss_pred             hhCCCCCEEECCC----CCCCCCccchhHHhhCCCCCEEECCC----------CccCCc-hhhhhcccCCcceEEccCCc
Confidence            5688999999999    88765   456777899999999986          667766 3455555  89999999988


Q ss_pred             cc-cccc-------cccccccccccccccc
Q 039475          161 LA-YMAN-------GFERLTSLRTLSGFTV  182 (286)
Q Consensus       161 ~~-~lP~-------~i~~L~~L~~L~~~~~  182 (286)
                      +. .+|.       -+..+++|+.|+...+
T Consensus       232 l~~~~~~~~~y~~~il~~~P~L~~LDg~~v  261 (267)
T 3rw6_A          232 LCDTFRDQSTYISAIRERFPKLLRLDGHEL  261 (267)
T ss_dssp             TGGGCSSHHHHHHHHHHHCTTCCEESSCBC
T ss_pred             CccccCcchhHHHHHHHHCcccCeECCcCC
Confidence            76 3441       2667788888875443

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=97.69  E-value=1.6e-05  Score=63.96  Aligned_cols=116  Identities=14%  Similarity=0.064  Sum_probs=75.2

Q ss_pred             chhhhcCCCCcEEEeccC-CCCCCCcCccchhhhcCCCCCcEEEeecccCCccCc-----ccCccccCCCCCcEEecccc
Q 039475           53 PVSIFDAKKLRSLSLFYD-SKGQSAASPVLQGLFDQLTCLRALKIEELWYGDQTI-----EIPKGLENLIHLRYLKLSAV  126 (286)
Q Consensus        53 ~~~~~~l~~Lr~L~l~~~-~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~i~-----~lP~~i~~L~~Lr~L~L~~~  126 (286)
                      ...+...+.|++|++.++ ...... ...+...+...+.|++|+|++    |.+.     .+...+.....|++|+|++ 
T Consensus        29 ~~~l~~~~~L~~L~L~~n~~i~~~g-~~~l~~~L~~~~~L~~L~Ls~----n~i~~~g~~~l~~~L~~n~~L~~L~L~~-  102 (185)
T 1io0_A           29 KRIQNNDPDLEEVNLNNIMNIPVPT-LKACAEALKTNTYVKKFSIVG----TRSNDPVAFALAEMLKVNNTLKSLNVES-  102 (185)
T ss_dssp             HHHHTTCTTCCEEECTTCTTCCHHH-HHHHHHHHTTCCSCCEEECTT----SCCCHHHHHHHHHHHHHCSSCCEEECCS-
T ss_pred             HHHHhcCCCCCEEEecCCCCCCHHH-HHHHHHHHHhCCCcCEEECcC----CCCChHHHHHHHHHHHhCCCcCEEECcC-
Confidence            344566788888888887 543211 011445566778888888888    7765     2455666667888888875 


Q ss_pred             cccCCCCCCCCCc-----ccccccccccCCCEEEe--cCCCccc-----cccccccccccccccccccc
Q 039475          127 EELSETCYCPSLK-----RLPQGRGKLINLRHLIF--DKDYLAY-----MANGFERLTSLRTLSGFTVA  183 (286)
Q Consensus       127 ~~LP~~~~~~~l~-----~LP~~i~~L~~L~~L~l--~~~~~~~-----lP~~i~~L~~L~~L~~~~~~  183 (286)
                               +.+.     .+...+...++|++|++  .+|.+..     +...+...++|++|++..+.
T Consensus       103 ---------N~i~~~g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~  162 (185)
T 1io0_A          103 ---------NFISGSGILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQ  162 (185)
T ss_dssp             ---------SCCCHHHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSS
T ss_pred             ---------CcCCHHHHHHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCC
Confidence                     4444     35666777778888888  6676653     33335555677777665443

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=97.51  E-value=0.0001  Score=62.81  Aligned_cols=82  Identities=18%  Similarity=0.161  Sum_probs=63.2

Q ss_pred             hcCCCCcEEEeccCCCCCCCcCccchhhhcCCCCCcEEEeecccCCccCcccCccccCCC--CCcEEecccccccCCCCC
Q 039475           57 FDAKKLRSLSLFYDSKGQSAASPVLQGLFDQLTCLRALKIEELWYGDQTIEIPKGLENLI--HLRYLKLSAVEELSETCY  134 (286)
Q Consensus        57 ~~l~~Lr~L~l~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~i~~lP~~i~~L~--~Lr~L~L~~~~~LP~~~~  134 (286)
                      .++++|++|++++|.......   ++..+..+++|++|+|++    |.+..+ ..++.+.  +|++|+|++         
T Consensus       167 ~~l~~L~~L~Ls~N~l~~l~~---l~~~~~~l~~L~~L~Ls~----N~i~~~-~~l~~l~~l~L~~L~L~~---------  229 (267)
T 3rw6_A          167 ENIPELLSLNLSNNRLYRLDD---MSSIVQKAPNLKILNLSG----NELKSE-RELDKIKGLKLEELWLDG---------  229 (267)
T ss_dssp             HHCTTCCEEECTTSCCCCCGG---GTTHHHHSTTCCEEECTT----SCCCSG-GGGGGGTTSCCSEEECTT---------
T ss_pred             hhCCCCCEEECCCCCCCCCcc---chhHHhhCCCCCEEECCC----CccCCc-hhhhhcccCCcceEEccC---------
Confidence            468899999999999765322   667788999999999999    998876 4566666  999999986         


Q ss_pred             CCCCc-ccc-------cccccccCCCEEEe
Q 039475          135 CPSLK-RLP-------QGRGKLINLRHLIF  156 (286)
Q Consensus       135 ~~~l~-~LP-------~~i~~L~~L~~L~l  156 (286)
                       +.+. .+|       ..+..+++|+.||-
T Consensus       230 -Npl~~~~~~~~~y~~~il~~~P~L~~LDg  258 (267)
T 3rw6_A          230 -NSLCDTFRDQSTYISAIRERFPKLLRLDG  258 (267)
T ss_dssp             -STTGGGCSSHHHHHHHHHHHCTTCCEESS
T ss_pred             -CcCccccCcchhHHHHHHHHCcccCeECC
Confidence             4343 233       23678889998864

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=97.38  E-value=7.6e-05  Score=59.92  Aligned_cols=112  Identities=12%  Similarity=0.104  Sum_probs=83.6

Q ss_pred             cCCceEEEeecC-CCC-----CCchhhhcCCCCcEEEeccCCCCCCCcCccchhhhcCCCCCcEEEeecccCCccCcc--
Q 039475           36 QEKLRHLTLMLG-LPT-----KFPVSIFDAKKLRSLSLFYDSKGQSAASPVLQGLFDQLTCLRALKIEELWYGDQTIE--  107 (286)
Q Consensus        36 ~~~~r~ls~~~~-~~~-----~~~~~~~~l~~Lr~L~l~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~i~~--  107 (286)
                      ...+++|.+..+ .+.     .+...+...++|++|++++|...... ...+...+...+.|++|+|++    |.+..  
T Consensus        35 ~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g-~~~l~~~L~~n~~L~~L~L~~----N~i~~~g  109 (185)
T 1io0_A           35 DPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPV-AFALAEMLKVNNTLKSLNVES----NFISGSG  109 (185)
T ss_dssp             CTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHH-HHHHHHHHHHCSSCCEEECCS----SCCCHHH
T ss_pred             CCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHH-HHHHHHHHHhCCCcCEEECcC----CcCCHHH
Confidence            356899999887 653     23455667899999999999864321 111455667778999999999    88763  


Q ss_pred             ---cCccccCCCCCcEEec--ccccccCCCCCCCCCc-----ccccccccccCCCEEEecCCCcc
Q 039475          108 ---IPKGLENLIHLRYLKL--SAVEELSETCYCPSLK-----RLPQGRGKLINLRHLIFDKDYLA  162 (286)
Q Consensus       108 ---lP~~i~~L~~Lr~L~L--~~~~~LP~~~~~~~l~-----~LP~~i~~L~~L~~L~l~~~~~~  162 (286)
                         +...+.....|++|+|  ++          +.+.     .+...+...++|++|++++|.+.
T Consensus       110 ~~~l~~~L~~n~~L~~L~L~~~~----------N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i~  164 (185)
T 1io0_A          110 ILALVEALQSNTSLIELRIDNQS----------QPLGNNVEMEIANMLEKNTTLLKFGYHFTQQG  164 (185)
T ss_dssp             HHHHHHGGGGCSSCCEEECCCCS----------SCCCHHHHHHHHHHHHHCSSCCEEECCCSSHH
T ss_pred             HHHHHHHHHhCCCceEEEecCCC----------CCCCHHHHHHHHHHHHhCCCcCEEeccCCCCC
Confidence               6778888899999999  63          4444     35566777789999999998764

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=97.15  E-value=0.00027  Score=56.27  Aligned_cols=85  Identities=20%  Similarity=0.166  Sum_probs=46.0

Q ss_pred             CCCEEEecCCCcccc-cccccccccccccccccccccCCccCCCCCCcccccCc----ccccceeEEcccCCcccchhhh
Q 039475          150 NLRHLIFDKDYLAYM-ANGFERLTSLRTLSGFTVARVGGKYSSEACNLEGLRNL----NHLRQFLRICGLGNLQMRLKIN  224 (286)
Q Consensus       150 ~L~~L~l~~~~~~~l-P~~i~~L~~L~~L~~~~~~~~~~~~~~~~~~~~~l~~L----~~L~~~L~i~~l~~~~~~~~~~  224 (286)
                      +|++|+++++.++.. -..+..+++|++|.+..|...      ....+..+..+    ++|+ .|.+.++.++++  ...
T Consensus        62 ~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~I------tD~gL~~L~~~~~~~~~L~-~L~Ls~C~~ITD--~Gl  132 (176)
T 3e4g_A           62 KIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYI------EDGCLERLSQLENLQKSML-EMEIISCGNVTD--KGI  132 (176)
T ss_dssp             CEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTC------CHHHHHHHHTCHHHHHHCC-EEEEESCTTCCH--HHH
T ss_pred             eEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCcc------CHHHHHHHHhcccccCCCC-EEEcCCCCcCCH--HHH
Confidence            455555555544321 123455556666665555422      13344445443    2566 677776655544  223


Q ss_pred             hhcCCCCCCceEEEEeCCC
Q 039475          225 AHLEKKKNLVHLTLDFDKG  243 (286)
Q Consensus       225 ~~l~~l~~L~~L~L~~~~~  243 (286)
                      ..+..+++|++|+|+....
T Consensus       133 ~~L~~~~~L~~L~L~~c~~  151 (176)
T 3e4g_A          133 IALHHFRNLKYLFLSDLPG  151 (176)
T ss_dssp             HHGGGCTTCCEEEEESCTT
T ss_pred             HHHhcCCCCCEEECCCCCC
Confidence            4466678888888886543

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=96.79  E-value=0.00068  Score=53.91  Aligned_cols=89  Identities=10%  Similarity=0.017  Sum_probs=51.6

Q ss_pred             chhhhcCCCCCcEEEeecccCCccCcc-cCccccCCCCCcEEecccccccCCCCCCCCCcccc-cccccc----cCCCEE
Q 039475           81 LQGLFDQLTCLRALKIEELWYGDQTIE-IPKGLENLIHLRYLKLSAVEELSETCYCPSLKRLP-QGRGKL----INLRHL  154 (286)
Q Consensus        81 ~~~~~~~l~~Lr~L~L~~~~~~~~i~~-lP~~i~~L~~Lr~L~L~~~~~LP~~~~~~~l~~LP-~~i~~L----~~L~~L  154 (286)
                      +|..+..-..|+.||+++    +.++. =-..+..+++|+.|+|++         |..++.-- ..+..+    ++|++|
T Consensus        53 LP~~~~~~~~L~~LDLs~----~~Itd~GL~~L~~~~~L~~L~L~~---------C~~ItD~gL~~L~~~~~~~~~L~~L  119 (176)
T 3e4g_A           53 LPTGPLDKYKIQAIDATD----SCIMSIGFDHMEGLQYVEKIRLCK---------CHYIEDGCLERLSQLENLQKSMLEM  119 (176)
T ss_dssp             SCCCSTTCCCEEEEEEES----CCCCGGGGGGGTTCSCCCEEEEES---------CTTCCHHHHHHHHTCHHHHHHCCEE
T ss_pred             CCcccCCCceEeEEeCcC----CCccHHHHHHhcCCCCCCEEEeCC---------CCccCHHHHHHHHhcccccCCCCEE
Confidence            444332334688999998    77652 123567888888888885         76665321 123333    367888


Q ss_pred             EecCCC-cccc-cccccccccccccccccc
Q 039475          155 IFDKDY-LAYM-ANGFERLTSLRTLSGFTV  182 (286)
Q Consensus       155 ~l~~~~-~~~l-P~~i~~L~~L~~L~~~~~  182 (286)
                      +++++. ++.- -..+.++++|++|++..+
T Consensus       120 ~Ls~C~~ITD~Gl~~L~~~~~L~~L~L~~c  149 (176)
T 3e4g_A          120 EIISCGNVTDKGIIALHHFRNLKYLFLSDL  149 (176)
T ss_dssp             EEESCTTCCHHHHHHGGGCTTCCEEEEESC
T ss_pred             EcCCCCcCCHHHHHHHhcCCCCCEEECCCC
Confidence            887753 4321 123455566666655554

>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}

Probab=95.90  E-value=0.038  Score=49.21  Aligned_cols=84  Identities=10%  Similarity=0.039  Sum_probs=45.3

Q ss_pred             Cccccc-ccccccCCCEEEecCCCccccccc-ccccccccccccccccccCCccCCCCCCcccccCcccccceeEEcccC
Q 039475          138 LKRLPQ-GRGKLINLRHLIFDKDYLAYMANG-FERLTSLRTLSGFTVARVGGKYSSEACNLEGLRNLNHLRQFLRICGLG  215 (286)
Q Consensus       138 l~~LP~-~i~~L~~L~~L~l~~~~~~~lP~~-i~~L~~L~~L~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~~L~i~~l~  215 (286)
                      ++.++. .|.+..+|+.+++..+ +..++.+ |.++++|+.+.+-..- .       .-.-..+.++.+|+ ++.+..  
T Consensus       308 i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~c~~L~~i~lp~~l-~-------~I~~~aF~~C~~L~-~i~lp~--  375 (394)
T 4fs7_A          308 VKFIGEEAFESCTSLVSIDLPYL-VEEIGKRSFRGCTSLSNINFPLSL-R-------KIGANAFQGCINLK-KVELPK--  375 (394)
T ss_dssp             CCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCEECCCTTC-C-------EECTTTBTTCTTCC-EEEEEG--
T ss_pred             cceechhhhcCCCCCCEEEeCCc-ccEEhHHhccCCCCCCEEEECccc-c-------EehHHHhhCCCCCC-EEEECC--
Confidence            334432 3566777888877643 6666554 7888888877653210 0       11122345555565 666642  


Q ss_pred             CcccchhhhhhcCCCCCCceE
Q 039475          216 NLQMRLKINAHLEKKKNLVHL  236 (286)
Q Consensus       216 ~~~~~~~~~~~l~~l~~L~~L  236 (286)
                      .   .......+.+.++|+.+
T Consensus       376 ~---~~~~~~~F~~c~~L~~I  393 (394)
T 4fs7_A          376 R---LEQYRYDFEDTTKFKWI  393 (394)
T ss_dssp             G---GGGGGGGBCTTCEEEEE
T ss_pred             C---CEEhhheecCCCCCcEE
Confidence            1   22223456666666654

>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}

Probab=95.69  E-value=0.057  Score=48.05  Aligned_cols=130  Identities=15%  Similarity=0.141  Sum_probs=71.5

Q ss_pred             CceEEEeecCCCCCCchhhhcCCCCcEEEeccCCCCCCCcCccchhhhcCCCCCcEEEeecccCCccCcccCccccCCCC
Q 039475           38 KLRHLTLMLGLPTKFPVSIFDAKKLRSLSLFYDSKGQSAASPVLQGLFDQLTCLRALKIEELWYGDQTIEIPKGLENLIH  117 (286)
Q Consensus        38 ~~r~ls~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~i~~lP~~i~~L~~  117 (286)
                      .+..+.+.......-...+.....++.+.+..+....      ....|..+..++......    ..+.  ...+..+..
T Consensus       231 ~l~~i~ip~~~~~i~~~~f~~~~~l~~~~~~~~~~~i------~~~~F~~~~~l~~~~~~~----~~i~--~~~F~~~~~  298 (394)
T 4fs7_A          231 GVKNIIIPDSFTELGKSVFYGCTDLESISIQNNKLRI------GGSLFYNCSGLKKVIYGS----VIVP--EKTFYGCSS  298 (394)
T ss_dssp             CCCEEEECTTCCEECSSTTTTCSSCCEEEECCTTCEE------CSCTTTTCTTCCEEEECS----SEEC--TTTTTTCTT
T ss_pred             CCceEEECCCceecccccccccccceeEEcCCCccee------eccccccccccceeccCc----eeec--ccccccccc
Confidence            3455555432221112345667778877776553221      233455555565555544    2211  113444555


Q ss_pred             CcEEeccc-ccccCCC-C-CCCCCc---------ccc-cccccccCCCEEEecCCCccccccc-ccccccccccccc
Q 039475          118 LRYLKLSA-VEELSET-C-YCPSLK---------RLP-QGRGKLINLRHLIFDKDYLAYMANG-FERLTSLRTLSGF  180 (286)
Q Consensus       118 Lr~L~L~~-~~~LP~~-~-~~~~l~---------~LP-~~i~~L~~L~~L~l~~~~~~~lP~~-i~~L~~L~~L~~~  180 (286)
                      |+.+.+.. ++.+++. + +|.+|+         .++ ..|.++++|+.+.+..+ +..++.+ |..+++|+.+.+-
T Consensus       299 L~~i~l~~~i~~I~~~aF~~c~~L~~i~lp~~v~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~lp  374 (394)
T 4fs7_A          299 LTEVKLLDSVKFIGEEAFESCTSLVSIDLPYLVEEIGKRSFRGCTSLSNINFPLS-LRKIGANAFQGCINLKKVELP  374 (394)
T ss_dssp             CCEEEECTTCCEECTTTTTTCTTCCEECCCTTCCEECTTTTTTCTTCCEECCCTT-CCEECTTTBTTCTTCCEEEEE
T ss_pred             ccccccccccceechhhhcCCCCCCEEEeCCcccEEhHHhccCCCCCCEEEECcc-ccEehHHHhhCCCCCCEEEEC
Confidence            55555555 5555554 3 444443         333 24567788888888765 6777655 8888999888764

>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}

Probab=95.57  E-value=0.037  Score=49.31  Aligned_cols=69  Identities=20%  Similarity=0.284  Sum_probs=41.0

Q ss_pred             ccCCCCCcEEeccc-ccccCCC-C-CCCCCc---------ccc-cccccccCCCEEEecCCCccccccc-cccccccccc
Q 039475          112 LENLIHLRYLKLSA-VEELSET-C-YCPSLK---------RLP-QGRGKLINLRHLIFDKDYLAYMANG-FERLTSLRTL  177 (286)
Q Consensus       112 i~~L~~Lr~L~L~~-~~~LP~~-~-~~~~l~---------~LP-~~i~~L~~L~~L~l~~~~~~~lP~~-i~~L~~L~~L  177 (286)
                      +.++..|+.+.+.. +..++.. + +|.+|+         .+. ..|.++.+|+.+.+..+ +..+..+ |.++++|+.+
T Consensus       284 F~~c~~L~~i~l~~~i~~I~~~aF~~c~~L~~i~lp~~v~~I~~~aF~~C~~L~~i~ip~s-v~~I~~~aF~~C~~L~~i  362 (394)
T 4gt6_A          284 FMNCPALQDIEFSSRITELPESVFAGCISLKSIDIPEGITQILDDAFAGCEQLERIAIPSS-VTKIPESAFSNCTALNNI  362 (394)
T ss_dssp             TTTCTTCCEEECCTTCCEECTTTTTTCTTCCEEECCTTCCEECTTTTTTCTTCCEEEECTT-CCBCCGGGGTTCTTCCEE
T ss_pred             cccccccccccCCCcccccCceeecCCCCcCEEEeCCcccEehHhHhhCCCCCCEEEECcc-cCEEhHhHhhCCCCCCEE
Confidence            34444444444444 4444444 2 344433         333 24567788888888654 6677655 8888999888


Q ss_pred             cccc
Q 039475          178 SGFT  181 (286)
Q Consensus       178 ~~~~  181 (286)
                      .+..
T Consensus       363 ~~~~  366 (394)
T 4gt6_A          363 EYSG  366 (394)
T ss_dssp             EESS
T ss_pred             EECC
Confidence            6543

>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*

Probab=94.86  E-value=0.049  Score=40.71  Aligned_cols=53  Identities=19%  Similarity=0.265  Sum_probs=32.2

Q ss_pred             EEEeecccCCccCc--ccCccccCCCCCcEEecccccccCCCCCCCCCcccccc-cccccCCCEEEecCCCc
Q 039475           93 ALKIEELWYGDQTI--EIPKGLENLIHLRYLKLSAVEELSETCYCPSLKRLPQG-RGKLINLRHLIFDKDYL  161 (286)
Q Consensus        93 ~L~L~~~~~~~~i~--~lP~~i~~L~~Lr~L~L~~~~~LP~~~~~~~l~~LP~~-i~~L~~L~~L~l~~~~~  161 (286)
                      +++.++    ..++  .+|..|.  .+|++|+|++          +.++.||.. |..+.+|+.|+|.+|.+
T Consensus        12 ~v~Cs~----~~L~~~~vP~~lp--~~l~~L~Ls~----------N~l~~l~~~~f~~l~~L~~L~L~~NP~   67 (130)
T 3rfe_A           12 LVDCGR----RGLTWASLPTAFP--VDTTELVLTG----------NNLTALPPGLLDALPALRTAHLGANPW   67 (130)
T ss_dssp             EEECCS----SCCCTTTSCSCCC--TTCSEEECTT----------SCCSSCCTTTGGGCTTCCEEECCSSCC
T ss_pred             EEEeCC----CCCccccCCCCCC--cCCCEEECCC----------CcCCccChhhhhhccccCEEEecCCCe
Confidence            555555    5565  6665432  3466777765          666666644 46667777777777644

>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}

Probab=94.71  E-value=0.095  Score=46.57  Aligned_cols=116  Identities=15%  Similarity=0.209  Sum_probs=71.8

Q ss_pred             cccCCCCCcEEeccc-ccccCCC-C-CCCCCc---------cccc-ccccccCCCEEEecCCCccccccc-ccccccccc
Q 039475          111 GLENLIHLRYLKLSA-VEELSET-C-YCPSLK---------RLPQ-GRGKLINLRHLIFDKDYLAYMANG-FERLTSLRT  176 (286)
Q Consensus       111 ~i~~L~~Lr~L~L~~-~~~LP~~-~-~~~~l~---------~LP~-~i~~L~~L~~L~l~~~~~~~lP~~-i~~L~~L~~  176 (286)
                      .+.++..|+.+.+.. +..++.. + +|..++         .++. .|.+..+|+.+.+..+ ++.+... |..+++|+.
T Consensus       260 aF~~c~~L~~i~lp~~~~~I~~~aF~~c~~L~~i~l~~~i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~C~~L~~  338 (394)
T 4gt6_A          260 AFDSCAYLASVKMPDSVVSIGTGAFMNCPALQDIEFSSRITELPESVFAGCISLKSIDIPEG-ITQILDDAFAGCEQLER  338 (394)
T ss_dssp             TTTTCSSCCEEECCTTCCEECTTTTTTCTTCCEEECCTTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCE
T ss_pred             eeeecccccEEecccccceecCcccccccccccccCCCcccccCceeecCCCCcCEEEeCCc-ccEehHhHhhCCCCCCE
Confidence            567888999999988 7777777 4 666554         3442 4567889999999764 6777655 999999998


Q ss_pred             cccccccccCCccCCCCCCcccccCcccccceeEEcccCCcccchhhhhhcCCCCCCceEEEEeCC
Q 039475          177 LSGFTVARVGGKYSSEACNLEGLRNLNHLRQFLRICGLGNLQMRLKINAHLEKKKNLVHLTLDFDK  242 (286)
Q Consensus       177 L~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~~L~i~~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~  242 (286)
                      +.+-.. ..       .-.-..+.++++|+ ++.+.+.      ......+.....|+.+.+.-+.
T Consensus       339 i~ip~s-v~-------~I~~~aF~~C~~L~-~i~~~~~------~~~~~~~~~~~~L~~i~i~~~~  389 (394)
T 4gt6_A          339 IAIPSS-VT-------KIPESAFSNCTALN-NIEYSGS------RSQWNAISTDSGLQNLPVAPGS  389 (394)
T ss_dssp             EEECTT-CC-------BCCGGGGTTCTTCC-EEEESSC------HHHHHTCBCCCCC---------
T ss_pred             EEECcc-cC-------EEhHhHhhCCCCCC-EEEECCc------eeehhhhhccCCCCEEEeCCCC
Confidence            876321 11       12233466777777 7777631      1122456677888888876553

>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}

Probab=94.14  E-value=0.25  Score=43.41  Aligned_cols=104  Identities=18%  Similarity=0.236  Sum_probs=57.7

Q ss_pred             hhhhcCCCCcEEEeccCCCCCCCcCccchhhhcCCCCCcEEEeecccCCccCcccCc-cccCCCCCcEEecccccccCCC
Q 039475           54 VSIFDAKKLRSLSLFYDSKGQSAASPVLQGLFDQLTCLRALKIEELWYGDQTIEIPK-GLENLIHLRYLKLSAVEELSET  132 (286)
Q Consensus        54 ~~~~~l~~Lr~L~l~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~i~~lP~-~i~~L~~Lr~L~L~~~~~LP~~  132 (286)
                      ..+.....|+.+.+..+....      -...|.++..|+.+.+..    + +..+.. .+.++..|+.+.+..       
T Consensus       211 ~~f~~~~~l~~i~~~~~~~~i------~~~~f~~~~~L~~i~lp~----~-v~~I~~~aF~~~~~l~~i~l~~-------  272 (379)
T 4h09_A          211 YGFSYGKNLKKITITSGVTTL------GDGAFYGMKALDEIAIPK----N-VTSIGSFLLQNCTALKTLNFYA-------  272 (379)
T ss_dssp             TTTTTCSSCSEEECCTTCCEE------CTTTTTTCSSCCEEEECT----T-CCEECTTTTTTCTTCCEEEECC-------
T ss_pred             cccccccccceeeeccceeEE------ccccccCCccceEEEcCC----C-ccEeCccccceeehhccccccc-------
Confidence            345556677777765543211      334566777777777755    3 444433 556677777777763       


Q ss_pred             CCCCCCccccc-ccccccCCCEEEecCCCccccccc-cccccccccccc
Q 039475          133 CYCPSLKRLPQ-GRGKLINLRHLIFDKDYLAYMANG-FERLTSLRTLSG  179 (286)
Q Consensus       133 ~~~~~l~~LP~-~i~~L~~L~~L~l~~~~~~~lP~~-i~~L~~L~~L~~  179 (286)
                          .++.++. .+.++.+|+.+.+.++.+..++.. |.++++|+.+.+
T Consensus       273 ----~i~~i~~~aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~l  317 (379)
T 4h09_A          273 ----KVKTVPYLLCSGCSNLTKVVMDNSAIETLEPRVFMDCVKLSSVTL  317 (379)
T ss_dssp             ----CCSEECTTTTTTCTTCCEEEECCTTCCEECTTTTTTCTTCCEEEC
T ss_pred             ----cceeccccccccccccccccccccccceehhhhhcCCCCCCEEEc
Confidence                3444442 234455555555555555555443 555555555543

>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*

Probab=94.11  E-value=0.059  Score=40.24  Aligned_cols=47  Identities=21%  Similarity=0.296  Sum_probs=38.0

Q ss_pred             CCCc--ccccccccccCCCEEEecCCCccccccc-ccccccccccccccccc
Q 039475          136 PSLK--RLPQGRGKLINLRHLIFDKDYLAYMANG-FERLTSLRTLSGFTVAR  184 (286)
Q Consensus       136 ~~l~--~LP~~i~~L~~L~~L~l~~~~~~~lP~~-i~~L~~L~~L~~~~~~~  184 (286)
                      ..++  .+|..+.  .+|++|+|++|.+..+|.+ |..+.+|++|++..+..
T Consensus        18 ~~L~~~~vP~~lp--~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~   67 (130)
T 3rfe_A           18 RGLTWASLPTAFP--VDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPW   67 (130)
T ss_dssp             SCCCTTTSCSCCC--TTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCC
T ss_pred             CCCccccCCCCCC--cCCCEEECCCCcCCccChhhhhhccccCEEEecCCCe
Confidence            5566  8886643  3699999999999999987 88999999998876643

>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}

Probab=93.51  E-value=0.25  Score=43.38  Aligned_cols=120  Identities=16%  Similarity=0.189  Sum_probs=77.7

Q ss_pred             CceEEEeecCCCCCCchhhhcCCCCcEEEeccCCCCCCCcCccchhhhcCCCCCcEEEeecccCCccCcccCc-cccCCC
Q 039475           38 KLRHLTLMLGLPTKFPVSIFDAKKLRSLSLFYDSKGQSAASPVLQGLFDQLTCLRALKIEELWYGDQTIEIPK-GLENLI  116 (286)
Q Consensus        38 ~~r~ls~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~i~~lP~-~i~~L~  116 (286)
                      ....+.+..+-...-...+.....|+.+.+..+-..      +-...|.++..|+.+.+..    . +..++. .+.++.
T Consensus       218 ~l~~i~~~~~~~~i~~~~f~~~~~L~~i~lp~~v~~------I~~~aF~~~~~l~~i~l~~----~-i~~i~~~aF~~c~  286 (379)
T 4h09_A          218 NLKKITITSGVTTLGDGAFYGMKALDEIAIPKNVTS------IGSFLLQNCTALKTLNFYA----K-VKTVPYLLCSGCS  286 (379)
T ss_dssp             SCSEEECCTTCCEECTTTTTTCSSCCEEEECTTCCE------ECTTTTTTCTTCCEEEECC----C-CSEECTTTTTTCT
T ss_pred             ccceeeeccceeEEccccccCCccceEEEcCCCccE------eCccccceeehhccccccc----c-ceecccccccccc
Confidence            345555543322212345677888999888665321      1345678888899888865    3 555554 668888


Q ss_pred             CCcEEecccccccCCCCCCCCCccccc-ccccccCCCEEEecCCCccccccc-cccccccccccc
Q 039475          117 HLRYLKLSAVEELSETCYCPSLKRLPQ-GRGKLINLRHLIFDKDYLAYMANG-FERLTSLRTLSG  179 (286)
Q Consensus       117 ~Lr~L~L~~~~~LP~~~~~~~l~~LP~-~i~~L~~L~~L~l~~~~~~~lP~~-i~~L~~L~~L~~  179 (286)
                      +|+.+.+..          +.++.++. .|.+..+|+.+.+..+ ++.+... |.++++|+.+.+
T Consensus       287 ~L~~i~l~~----------~~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~i  340 (379)
T 4h09_A          287 NLTKVVMDN----------SAIETLEPRVFMDCVKLSSVTLPTA-LKTIQVYAFKNCKALSTISY  340 (379)
T ss_dssp             TCCEEEECC----------TTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCCCCC
T ss_pred             ccccccccc----------cccceehhhhhcCCCCCCEEEcCcc-ccEEHHHHhhCCCCCCEEEE
Confidence            999998864          34666653 4566777777777643 6666654 788888887765

>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1

Probab=86.71  E-value=0.24  Score=39.81  Aligned_cols=119  Identities=12%  Similarity=0.099  Sum_probs=66.2

Q ss_pred             ccCCCCCcEEecccccccCCCCCCCCCc-----ccccccccccCCCEEEecCCCccc-----cccccccccccccccccc
Q 039475          112 LENLIHLRYLKLSAVEELSETCYCPSLK-----RLPQGRGKLINLRHLIFDKDYLAY-----MANGFERLTSLRTLSGFT  181 (286)
Q Consensus       112 i~~L~~Lr~L~L~~~~~LP~~~~~~~l~-----~LP~~i~~L~~L~~L~l~~~~~~~-----lP~~i~~L~~L~~L~~~~  181 (286)
                      +.+-..|+.|+|++         ++.+.     .|-..+..-+.|++|++.+|.+..     +...+..-+.|++|++..
T Consensus        37 l~~n~~L~~L~L~~---------nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~  107 (197)
T 1pgv_A           37 REDDTDLKEVNINN---------MKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVES  107 (197)
T ss_dssp             HTTCSSCCEEECTT---------CCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCS
T ss_pred             HhcCCCccEEECCC---------CCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCC
Confidence            34556788999874         22332     344556666789999998887752     223344556788887776


Q ss_pred             ccccCCccCCCCC-CcccccCcccccceeEEcccCC--ccc--chhhhhhcCCCCCCceEEEEeCCCC
Q 039475          182 VARVGGKYSSEAC-NLEGLRNLNHLRQFLRICGLGN--LQM--RLKINAHLEKKKNLVHLTLDFDKGE  244 (286)
Q Consensus       182 ~~~~~~~~~~~~~-~~~~l~~L~~L~~~L~i~~l~~--~~~--~~~~~~~l~~l~~L~~L~L~~~~~~  244 (286)
                      +.....    ... ....+..=+.|+ .|.+.+..+  +..  ..++...+..-+.|+.|+++++..+
T Consensus       108 N~Ig~~----Ga~ala~aL~~N~tL~-~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~~~~g  170 (197)
T 1pgv_A          108 NFLTPE----LLARLLRSTLVTQSIV-EFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFASME  170 (197)
T ss_dssp             SBCCHH----HHHHHHHHTTTTCCCS-EEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCCHH
T ss_pred             CcCCHH----HHHHHHHHHhhCCcee-EEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccCCCcc
Confidence            654310    000 111233334455 566653221  222  2345566666677777777766543

>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1

Probab=81.16  E-value=0.99  Score=36.16  Aligned_cols=119  Identities=11%  Similarity=0.024  Sum_probs=70.5

Q ss_pred             cccccCCCEEEecCC-Cccc-----ccccccccccccccccccccccCCccCCCCCCcc-cccCcccccceeEEcccCCc
Q 039475          145 RGKLINLRHLIFDKD-YLAY-----MANGFERLTSLRTLSGFTVARVGGKYSSEACNLE-GLRNLNHLRQFLRICGLGNL  217 (286)
Q Consensus       145 i~~L~~L~~L~l~~~-~~~~-----lP~~i~~L~~L~~L~~~~~~~~~~~~~~~~~~~~-~l~~L~~L~~~L~i~~l~~~  217 (286)
                      +.+-+.|++|+++++ .+..     +-..+..-+.|++|++..+...+.    ....+. .|..=+.|+ .|.+....-.
T Consensus        37 l~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~----ga~alA~aL~~N~tL~-~L~L~~N~Ig  111 (197)
T 1pgv_A           37 REDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDS----EARGLIELIETSPSLR-VLNVESNFLT  111 (197)
T ss_dssp             HTTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHH----HHTTHHHHHHHCSSCC-EEECCSSBCC
T ss_pred             HhcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChH----HHHHHHHHHhcCCccC-eEecCCCcCC
Confidence            345578999999874 5542     334466667899998877765420    112222 233334455 6666644322


Q ss_pred             cc-chhhhhhcCCCCCCceEEEEeCCC-CCCccchhhccccccchhhHHHHHHHHHhcCCCCCcccCCC
Q 039475          218 QM-RLKINAHLEKKKNLVHLTLDFDKG-EDEEDEDYEEAPNLMNEENEAKQEAICEALQAPPNIVIRNN  284 (286)
Q Consensus       218 ~~-~~~~~~~l~~l~~L~~L~L~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~L~~l~~  284 (286)
                      .. ..++...+..-+.|+.|+|+.+.. .-+                .+...++.+.|+..+.|+.|+.
T Consensus       112 ~~Ga~ala~aL~~N~tL~~L~L~n~~~~~ig----------------~~g~~~ia~aL~~N~tL~~L~l  164 (197)
T 1pgv_A          112 PELLARLLRSTLVTQSIVEFKADNQRQSVLG----------------NQVEMDMMMAIEENESLLRVGI  164 (197)
T ss_dssp             HHHHHHHHHHTTTTCCCSEEECCCCSSCCCC----------------HHHHHHHHHHHHHCSSCCEEEC
T ss_pred             HHHHHHHHHHHhhCCceeEEECCCCcCcCcC----------------HHHHHHHHHHHHhCCCcCeEec
Confidence            22 556677787777899999986543 211                1134456677777888877653

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	286
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	99.57
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	99.52
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	99.49
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	99.46
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	99.46
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.45
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.44
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.44
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.43
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	99.42
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	99.4
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	99.37
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	99.33
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	99.33
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	99.32
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	99.28
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	99.27
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	99.27
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	99.22
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	99.22
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	99.14
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	99.09
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	99.03
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	99.03
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	98.99
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	98.96
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	98.94
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	98.94
d2ifga3	156	High affinity nerve growth factor receptor, N-term	98.9
d2ifga3	156	High affinity nerve growth factor receptor, N-term	98.83
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	98.64
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	98.56
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	98.19
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	98.17
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	97.71
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	97.52
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	97.4
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	97.24
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	96.2
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	94.52
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	94.27
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	93.35

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.57  E-value=9.6e-15  Score=123.47  Aligned_cols=179  Identities=20%  Similarity=0.118  Sum_probs=138.6

Q ss_pred             cccCCceEEEeecCCCCCCc-hhhhcCCCCcEEEeccCCCCCCCcCccchhhhcCCCCCcEEEeecccCCccCcccCccc
Q 039475           34 SCQEKLRHLTLMLGLPTKFP-VSIFDAKKLRSLSLFYDSKGQSAASPVLQGLFDQLTCLRALKIEELWYGDQTIEIPKGL  112 (286)
Q Consensus        34 ~~~~~~r~ls~~~~~~~~~~-~~~~~l~~Lr~L~l~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~i~~lP~~i  112 (286)
                      .++.++++|.+..+.+..++ ..|..+++|+.|++.+|....      ++. ++.++.|++|+|++    |.+...|..+
T Consensus        28 ~lp~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~L~~N~l~~------l~~-~~~l~~L~~L~Ls~----N~l~~~~~~~   96 (266)
T d1p9ag_          28 DLPKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTK------LQV-DGTLPVLGTLDLSH----NQLQSLPLLG   96 (266)
T ss_dssp             CCCTTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCE------EEC-CSCCTTCCEEECCS----SCCSSCCCCT
T ss_pred             CcCcCCCEEECcCCcCCCcCHHHhhccccccccccccccccc------ccc-cccccccccccccc----cccccccccc
Confidence            35677899999988887666 457889999999999987643      443 47888999999999    8888888889


Q ss_pred             cCCCCCcEEecccccccCCCCCCCCCcccc-cccccccCCCEEEecCCCccccccc-ccccccccccccccccccCCccC
Q 039475          113 ENLIHLRYLKLSAVEELSETCYCPSLKRLP-QGRGKLINLRHLIFDKDYLAYMANG-FERLTSLRTLSGFTVARVGGKYS  190 (286)
Q Consensus       113 ~~L~~Lr~L~L~~~~~LP~~~~~~~l~~LP-~~i~~L~~L~~L~l~~~~~~~lP~~-i~~L~~L~~L~~~~~~~~~~~~~  190 (286)
                      .++.+|++|++++          ..+..++ ..+..+.++++|++.+|.+..+|.+ +..+++|+.|++..+...     
T Consensus        97 ~~l~~L~~L~l~~----------~~~~~~~~~~~~~l~~l~~L~l~~n~l~~l~~~~~~~l~~l~~l~l~~N~l~-----  161 (266)
T d1p9ag_          97 QTLPALTVLDVSF----------NRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLT-----  161 (266)
T ss_dssp             TTCTTCCEEECCS----------SCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCS-----
T ss_pred             ccccccccccccc----------cccceeeccccccccccccccccccccceeccccccccccchhccccccccc-----
Confidence            9999999999985          5566655 4567889999999999999988876 778899999988877654     


Q ss_pred             CCCCCcccccCcccccceeEEcccCCcccchhhhhhcCCCCCCceEEEEeCCCCC
Q 039475          191 SEACNLEGLRNLNHLRQFLRICGLGNLQMRLKINAHLEKKKNLVHLTLDFDKGED  245 (286)
Q Consensus       191 ~~~~~~~~l~~L~~L~~~L~i~~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~  245 (286)
                        ......+..+++|+ .|.+.+..    ...++..+..+++|+.|+|+.|...-
T Consensus       162 --~~~~~~~~~l~~L~-~L~Ls~N~----L~~lp~~~~~~~~L~~L~L~~Np~~C  209 (266)
T d1p9ag_         162 --ELPAGLLNGLENLD-TLLLQENS----LYTIPKGFFGSHLLPFAFLHGNPWLC  209 (266)
T ss_dssp             --CCCTTTTTTCTTCC-EEECCSSC----CCCCCTTTTTTCCCSEEECCSCCBCC
T ss_pred             --ccCccccccccccc-eeecccCC----CcccChhHCCCCCCCEEEecCCCCCC
Confidence              33444567777777 78877532    22455667778999999999997653

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.52  E-value=5.2e-14  Score=118.88  Aligned_cols=171  Identities=19%  Similarity=0.047  Sum_probs=129.7

Q ss_pred             EEEeecCCCCCCchhhhcCCCCcEEEeccCCCCCCCcCccchhhhcCCCCCcEEEeecccCCccCcccCccccCCCCCcE
Q 039475           41 HLTLMLGLPTKFPVSIFDAKKLRSLSLFYDSKGQSAASPVLQGLFDQLTCLRALKIEELWYGDQTIEIPKGLENLIHLRY  120 (286)
Q Consensus        41 ~ls~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~i~~lP~~i~~L~~Lr~  120 (286)
                      .+.-..+....+|+.+.  +++++|++++|.....     .+..|.++++|++|+|++    |.++.+| .++.+++|++
T Consensus        14 ~v~C~~~~L~~iP~~lp--~~l~~L~Ls~N~i~~l-----~~~~f~~l~~L~~L~L~~----N~l~~l~-~~~~l~~L~~   81 (266)
T d1p9ag_          14 EVNCDKRNLTALPPDLP--KDTTILHLSENLLYTF-----SLATLMPYTRLTQLNLDR----AELTKLQ-VDGTLPVLGT   81 (266)
T ss_dssp             EEECTTSCCSSCCSCCC--TTCCEEECTTSCCSEE-----EGGGGTTCTTCCEEECTT----SCCCEEE-CCSCCTTCCE
T ss_pred             EEEccCCCCCeeCcCcC--cCCCEEECcCCcCCCc-----CHHHhhcccccccccccc----ccccccc-cccccccccc
Confidence            34444455566776653  6799999999976532     456789999999999999    9999887 4688999999


Q ss_pred             EecccccccCCCCCCCCCcccccccccccCCCEEEecCCCccccccc-ccccccccccccccccccCCccCCCCCCcccc
Q 039475          121 LKLSAVEELSETCYCPSLKRLPQGRGKLINLRHLIFDKDYLAYMANG-FERLTSLRTLSGFTVARVGGKYSSEACNLEGL  199 (286)
Q Consensus       121 L~L~~~~~LP~~~~~~~l~~LP~~i~~L~~L~~L~l~~~~~~~lP~~-i~~L~~L~~L~~~~~~~~~~~~~~~~~~~~~l  199 (286)
                      |+|++          +.++..|..+..+++|+.|+++++.+..++.. +..+.++++|.+..+...       ......+
T Consensus        82 L~Ls~----------N~l~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~l~~L~l~~n~l~-------~l~~~~~  144 (266)
T d1p9ag_          82 LDLSH----------NQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELK-------TLPPGLL  144 (266)
T ss_dssp             EECCS----------SCCSSCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCC-------CCCTTTT
T ss_pred             ccccc----------ccccccccccccccccccccccccccceeeccccccccccccccccccccc-------eeccccc
Confidence            99986          67888898999999999999999988877655 788899999988766543       2233345


Q ss_pred             cCcccccceeEEcccCCcccchhhhhhcCCCCCCceEEEEeCCCC
Q 039475          200 RNLNHLRQFLRICGLGNLQMRLKINAHLEKKKNLVHLTLDFDKGE  244 (286)
Q Consensus       200 ~~L~~L~~~L~i~~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~  244 (286)
                      ..+++++ .+.+.+.. +  ....+..+..+++|++|+|+.|+.+
T Consensus       145 ~~l~~l~-~l~l~~N~-l--~~~~~~~~~~l~~L~~L~Ls~N~L~  185 (266)
T d1p9ag_         145 TPTPKLE-KLSLANNN-L--TELPAGLLNGLENLDTLLLQENSLY  185 (266)
T ss_dssp             TTCTTCC-EEECTTSC-C--SCCCTTTTTTCTTCCEEECCSSCCC
T ss_pred             cccccch-hccccccc-c--cccCccccccccccceeecccCCCc
Confidence            5566666 67766431 1  2233456788999999999999876

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.49  E-value=9.8e-14  Score=119.11  Aligned_cols=187  Identities=18%  Similarity=0.157  Sum_probs=116.8

Q ss_pred             ccCCceEEEeecCCCCCCch-hhhcCCCCcEEEeccCCCCCCCcCccchhhhcCCCCCcEEEeecccCCccCcccCcccc
Q 039475           35 CQEKLRHLTLMLGLPTKFPV-SIFDAKKLRSLSLFYDSKGQSAASPVLQGLFDQLTCLRALKIEELWYGDQTIEIPKGLE  113 (286)
Q Consensus        35 ~~~~~r~ls~~~~~~~~~~~-~~~~l~~Lr~L~l~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~i~~lP~~i~  113 (286)
                      ++..+++|.+..+.+..+++ .|..+++|++|++.++.....     .|..|.+++.|++|++++    +.++.+|..+.
T Consensus        29 l~~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~l~~n~~~~i-----~~~~f~~l~~L~~L~l~~----n~l~~l~~~~~   99 (305)
T d1xkua_          29 LPPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKI-----SPGAFAPLVKLERLYLSK----NQLKELPEKMP   99 (305)
T ss_dssp             CCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCB-----CTTTTTTCTTCCEEECCS----SCCSBCCSSCC
T ss_pred             CCCCCCEEECcCCcCCCcChhHhhcccccccccccccccccc-----chhhhhCCCccCEecccC----CccCcCccchh
Confidence            56789999999998887875 688899999999999876542     577889999999999999    99988887543


Q ss_pred             CCCCCcEEeccc--ccccCCC-C--------------CCCCCcccccccccccCCCEEEecCCCcccccc----------
Q 039475          114 NLIHLRYLKLSA--VEELSET-C--------------YCPSLKRLPQGRGKLINLRHLIFDKDYLAYMAN----------  166 (286)
Q Consensus       114 ~L~~Lr~L~L~~--~~~LP~~-~--------------~~~~l~~LP~~i~~L~~L~~L~l~~~~~~~lP~----------  166 (286)
                        ..|+.|++..  +..++.. .              ........+..+..+++|+++++.++.+..+|.          
T Consensus       100 --~~l~~L~~~~n~l~~l~~~~~~~~~~~~~l~~~~n~~~~~~~~~~~~~~l~~L~~l~l~~n~l~~l~~~~~~~L~~L~  177 (305)
T d1xkua_         100 --KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQGLPPSLTELH  177 (305)
T ss_dssp             --TTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCCSCCSSCCTTCSEEE
T ss_pred             --hhhhhhhccccchhhhhhhhhhccccccccccccccccccCCCccccccccccCccccccCCccccCcccCCccCEEE
Confidence              4677777766  5555433 2              000011122334445555555555544444443          


Q ss_pred             ------------cccccccccccccccccccCCccCCCCCCcccccCcccccceeEEcccCCcccchhhhhhcCCCCCCc
Q 039475          167 ------------GFERLTSLRTLSGFTVARVGGKYSSEACNLEGLRNLNHLRQFLRICGLGNLQMRLKINAHLEKKKNLV  234 (286)
Q Consensus       167 ------------~i~~L~~L~~L~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~~L~i~~l~~~~~~~~~~~~l~~l~~L~  234 (286)
                                  .+.+++.++.|.+..+...       ......+.++++|+ .|.+.+..    ...++..+..+++|+
T Consensus       178 l~~n~~~~~~~~~~~~~~~l~~L~~s~n~l~-------~~~~~~~~~l~~L~-~L~L~~N~----L~~lp~~l~~l~~L~  245 (305)
T d1xkua_         178 LDGNKITKVDAASLKGLNNLAKLGLSFNSIS-------AVDNGSLANTPHLR-ELHLNNNK----LVKVPGGLADHKYIQ  245 (305)
T ss_dssp             CTTSCCCEECTGGGTTCTTCCEEECCSSCCC-------EECTTTGGGSTTCC-EEECCSSC----CSSCCTTTTTCSSCC
T ss_pred             CCCCcCCCCChhHhhcccccccccccccccc-------ccccccccccccce-eeeccccc----ccccccccccccCCC
Confidence                        3444444444444333222       11223344455555 56665431    123455677788888


Q ss_pred             eEEEEeCCCC
Q 039475          235 HLTLDFDKGE  244 (286)
Q Consensus       235 ~L~L~~~~~~  244 (286)
                      .|+|+.|+.+
T Consensus       246 ~L~Ls~N~i~  255 (305)
T d1xkua_         246 VVYLHNNNIS  255 (305)
T ss_dssp             EEECCSSCCC
T ss_pred             EEECCCCccC
Confidence            8888888765

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=99.46  E-value=2e-13  Score=117.66  Aligned_cols=203  Identities=16%  Similarity=0.075  Sum_probs=134.9

Q ss_pred             CCceEEEeecCCCC---CCchhhhcCCCCcEEEecc-CCCCCCCcCccchhhhcCCCCCcEEEeecccCCccCccc-Ccc
Q 039475           37 EKLRHLTLMLGLPT---KFPVSIFDAKKLRSLSLFY-DSKGQSAASPVLQGLFDQLTCLRALKIEELWYGDQTIEI-PKG  111 (286)
Q Consensus        37 ~~~r~ls~~~~~~~---~~~~~~~~l~~Lr~L~l~~-~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~i~~l-P~~  111 (286)
                      .++..+.+..+...   .+|+.+.++++|++|++++ |...+.     +|..|+++++|++|+|++    +.+..+ |..
T Consensus        50 ~~v~~L~L~~~~l~g~~~lp~~l~~L~~L~~L~Ls~~N~l~g~-----iP~~i~~L~~L~~L~Ls~----N~l~~~~~~~  120 (313)
T d1ogqa_          50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGP-----IPPAIAKLTQLHYLYITH----TNVSGAIPDF  120 (313)
T ss_dssp             CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESC-----CCGGGGGCTTCSEEEEEE----ECCEEECCGG
T ss_pred             EEEEEEECCCCCCCCCCCCChHHhcCccccccccccccccccc-----cccccccccccchhhhcc----cccccccccc
Confidence            35788888887664   4789999999999999987 554433     788899999999999999    888754 556


Q ss_pred             ccCCCCCcEEecccccccCCCCCCCCCcccccccccccCCCEEEecCCCcc-cccccccccccc-cccccccccccCCc-
Q 039475          112 LENLIHLRYLKLSAVEELSETCYCPSLKRLPQGRGKLINLRHLIFDKDYLA-YMANGFERLTSL-RTLSGFTVARVGGK-  188 (286)
Q Consensus       112 i~~L~~Lr~L~L~~~~~LP~~~~~~~l~~LP~~i~~L~~L~~L~l~~~~~~-~lP~~i~~L~~L-~~L~~~~~~~~~~~-  188 (286)
                      +..+.+|++++++.         +.....+|.+++++++|+++++++|.+. .+|..++.+..+ +.+....+...... 
T Consensus       121 ~~~~~~L~~l~l~~---------N~~~~~~p~~l~~l~~L~~l~l~~n~l~~~ip~~~~~l~~l~~~l~~~~n~l~~~~~  191 (313)
T d1ogqa_         121 LSQIKTLVTLDFSY---------NALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIP  191 (313)
T ss_dssp             GGGCTTCCEEECCS---------SEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECC
T ss_pred             ccchhhhccccccc---------ccccccCchhhccCcccceeecccccccccccccccccccccccccccccccccccc
Confidence            89999999999985         3444567778888888888888887776 667777777665 44433332211000 


Q ss_pred             ---------------cCCCCCCcccccCcccccceeEEcccCCcccchhhhhhcCCCCCCceEEEEeCCCCCCccchhhc
Q 039475          189 ---------------YSSEACNLEGLRNLNHLRQFLRICGLGNLQMRLKINAHLEKKKNLVHLTLDFDKGEDEEDEDYEE  253 (286)
Q Consensus       189 ---------------~~~~~~~~~~l~~L~~L~~~L~i~~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~  253 (286)
                                     ....+.....+..++.++ .+.+.+.   . .......+..+++|+.|+|+.|+.++        
T Consensus       192 ~~~~~l~~~~l~l~~~~~~~~~~~~~~~~~~l~-~l~~~~~---~-l~~~~~~~~~~~~L~~L~Ls~N~l~g--------  258 (313)
T d1ogqa_         192 PTFANLNLAFVDLSRNMLEGDASVLFGSDKNTQ-KIHLAKN---S-LAFDLGKVGLSKNLNGLDLRNNRIYG--------  258 (313)
T ss_dssp             GGGGGCCCSEEECCSSEEEECCGGGCCTTSCCS-EEECCSS---E-ECCBGGGCCCCTTCCEEECCSSCCEE--------
T ss_pred             ccccccccccccccccccccccccccccccccc-ccccccc---c-ccccccccccccccccccCccCeecc--------
Confidence                           000011222233444444 4444322   1 11223467888999999999998862        


Q ss_pred             cccccchhhHHHHHHHHHhcCCCCCcccCCC
Q 039475          254 APNLMNEENEAKQEAICEALQAPPNIVIRNN  284 (286)
Q Consensus       254 ~~~~~~~~~~~~~~~~~~~L~~~~~L~~l~~  284 (286)
                                    .+.+.+...++|++||.
T Consensus       259 --------------~iP~~l~~L~~L~~L~L  275 (313)
T d1ogqa_         259 --------------TLPQGLTQLKFLHSLNV  275 (313)
T ss_dssp             --------------CCCGGGGGCTTCCEEEC
T ss_pred             --------------cCChHHhCCCCCCEEEC
Confidence                          13445555678888763

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.46  E-value=3.1e-13  Score=114.97  Aligned_cols=192  Identities=20%  Similarity=0.190  Sum_probs=121.9

Q ss_pred             cccCCceEEEeecCCCCCCch-hhhcCCCCcEEEeccCCCCCCCcCccchhhhcCCCCCcEEEeecccCCccCccc-Ccc
Q 039475           34 SCQEKLRHLTLMLGLPTKFPV-SIFDAKKLRSLSLFYDSKGQSAASPVLQGLFDQLTCLRALKIEELWYGDQTIEI-PKG  111 (286)
Q Consensus        34 ~~~~~~r~ls~~~~~~~~~~~-~~~~l~~Lr~L~l~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~i~~l-P~~  111 (286)
                      .++..++.|.+..+.+..++. .|.++++|+.|+++++.....     .+..+.++..++.++....   +.+..+ |..
T Consensus        29 ~ip~~~~~L~Ls~N~i~~i~~~~f~~l~~L~~L~ls~n~l~~i-----~~~~~~~~~~~~~l~~~~~---~~~~~l~~~~  100 (284)
T d1ozna_          29 GIPAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARI-----DAAAFTGLALLEQLDLSDN---AQLRSVDPAT  100 (284)
T ss_dssp             TCCTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEE-----CTTTTTTCTTCCEEECCSC---TTCCCCCTTT
T ss_pred             CCCCCCCEEECcCCcCCCCCHHHhhcccccccccccccccccc-----ccccccccccccccccccc---cccccccchh
Confidence            356778999999988877764 588899999999998875432     4445556666666655430   335544 345


Q ss_pred             ccCCCCCcEEeccc--ccccCCC-C-----------CCCCCccccc-ccccccCCCEEEecCCCccccccc-cccccccc
Q 039475          112 LENLIHLRYLKLSA--VEELSET-C-----------YCPSLKRLPQ-GRGKLINLRHLIFDKDYLAYMANG-FERLTSLR  175 (286)
Q Consensus       112 i~~L~~Lr~L~L~~--~~~LP~~-~-----------~~~~l~~LP~-~i~~L~~L~~L~l~~~~~~~lP~~-i~~L~~L~  175 (286)
                      ++++++|++|++++  +..++.. .           ..+.++.+|. .+..+++|++|++++|.+..+|+. |..+++|+
T Consensus       101 ~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~l~l~~N~l~~i~~~~f~~~~~L~~L~l~~N~l~~l~~~~f~~l~~L~  180 (284)
T d1ozna_         101 FHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLD  180 (284)
T ss_dssp             TTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCC
T ss_pred             hcccccCCEEecCCcccccccccccchhcccchhhhccccccccChhHhccccchhhcccccCcccccchhhhccccccc
Confidence            66677777777765  3333322 1           2345666653 456777788888888777777544 77777888


Q ss_pred             ccccccccccCCccCCCCCCcccccCcccccceeEEcccCCcccchhhhhhcCCCCCCceEEEEeCCCC
Q 039475          176 TLSGFTVARVGGKYSSEACNLEGLRNLNHLRQFLRICGLGNLQMRLKINAHLEKKKNLVHLTLDFDKGE  244 (286)
Q Consensus       176 ~L~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~~L~i~~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~  244 (286)
                      .+.+..+...       ......+..+++|+ .|.+.+..-   ....+..+..+.+|++|+++.|...
T Consensus       181 ~l~l~~N~l~-------~i~~~~f~~l~~L~-~L~l~~N~i---~~~~~~~~~~~~~L~~L~l~~N~l~  238 (284)
T d1ozna_         181 RLLLHQNRVA-------HVHPHAFRDLGRLM-TLYLFANNL---SALPTEALAPLRALQYLRLNDNPWV  238 (284)
T ss_dssp             EEECCSSCCC-------EECTTTTTTCTTCC-EEECCSSCC---SCCCHHHHTTCTTCCEEECCSSCEE
T ss_pred             hhhhhhcccc-------ccChhHhhhhhhcc-ccccccccc---ccccccccccccccCEEEecCCCCC
Confidence            7777665443       22334455566565 566653211   2333456777778888888777654

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.45  E-value=1.7e-12  Score=105.52  Aligned_cols=164  Identities=20%  Similarity=0.192  Sum_probs=126.4

Q ss_pred             CCceEEEeecCCCCCCchhhhcCCCCcEEEeccCCCCCCCcCccchhhhcCCCCCcEEEeecccCCccCcccCccccCCC
Q 039475           37 EKLRHLTLMLGLPTKFPVSIFDAKKLRSLSLFYDSKGQSAASPVLQGLFDQLTCLRALKIEELWYGDQTIEIPKGLENLI  116 (286)
Q Consensus        37 ~~~r~ls~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~i~~lP~~i~~L~  116 (286)
                      ..++++.+..+.+..++ .+..+++|++|+++++....      ++. ++.+++|++|++++    +.++.+| .+++++
T Consensus        46 ~~L~~L~l~~~~i~~l~-~l~~l~~L~~L~L~~n~i~~------l~~-~~~l~~L~~L~l~~----n~i~~l~-~l~~l~  112 (210)
T d1h6ta2          46 NSIDQIIANNSDIKSVQ-GIQYLPNVTKLFLNGNKLTD------IKP-LANLKNLGWLFLDE----NKVKDLS-SLKDLK  112 (210)
T ss_dssp             HTCCEEECTTSCCCCCT-TGGGCTTCCEEECCSSCCCC------CGG-GTTCTTCCEEECCS----SCCCCGG-GGTTCT
T ss_pred             cCccEEECcCCCCCCch-hHhhCCCCCEEeCCCccccC------ccc-cccCcccccccccc----ccccccc-cccccc
Confidence            46888988888776554 47789999999999997653      443 57899999999999    9998888 689999


Q ss_pred             CCcEEecccccccCCCCCCCCCcccccccccccCCCEEEecCCCcccccccccccccccccccccccccCCccCCCCCCc
Q 039475          117 HLRYLKLSAVEELSETCYCPSLKRLPQGRGKLINLRHLIFDKDYLAYMANGFERLTSLRTLSGFTVARVGGKYSSEACNL  196 (286)
Q Consensus       117 ~Lr~L~L~~~~~LP~~~~~~~l~~LP~~i~~L~~L~~L~l~~~~~~~lP~~i~~L~~L~~L~~~~~~~~~~~~~~~~~~~  196 (286)
                      +|++|++++          +.+..++ .+..+++|+++++.++.+...+ .+.++++|+++.+..+...         .+
T Consensus       113 ~L~~L~l~~----------~~~~~~~-~l~~l~~l~~l~~~~n~l~~~~-~~~~l~~L~~l~l~~n~l~---------~i  171 (210)
T d1h6ta2         113 KLKSLSLEH----------NGISDIN-GLVHLPQLESLYLGNNKITDIT-VLSRLTKLDTLSLEDNQIS---------DI  171 (210)
T ss_dssp             TCCEEECTT----------SCCCCCG-GGGGCTTCCEEECCSSCCCCCG-GGGGCTTCSEEECCSSCCC---------CC
T ss_pred             ccccccccc----------ccccccc-cccccccccccccccccccccc-ccccccccccccccccccc---------cc
Confidence            999999985          4455555 5788999999999998877654 5788899999988766433         34


Q ss_pred             ccccCcccccceeEEcccCCcccchhhhhhcCCCCCCceEEEEe
Q 039475          197 EGLRNLNHLRQFLRICGLGNLQMRLKINAHLEKKKNLVHLTLDF  240 (286)
Q Consensus       197 ~~l~~L~~L~~~L~i~~l~~~~~~~~~~~~l~~l~~L~~L~L~~  240 (286)
                      ..+.++++|+ .|.+.+. .+..   + ..+..+++|+.|+|+.
T Consensus       172 ~~l~~l~~L~-~L~Ls~N-~i~~---l-~~l~~l~~L~~L~Ls~  209 (210)
T d1h6ta2         172 VPLAGLTKLQ-NLYLSKN-HISD---L-RALAGLKNLDVLELFS  209 (210)
T ss_dssp             GGGTTCTTCC-EEECCSS-CCCB---C-GGGTTCTTCSEEEEEE
T ss_pred             ccccCCCCCC-EEECCCC-CCCC---C-hhhcCCCCCCEEEccC
Confidence            4577788888 7888754 2222   2 3588899999999874

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.44  E-value=4.1e-13  Score=109.35  Aligned_cols=149  Identities=19%  Similarity=0.199  Sum_probs=116.1

Q ss_pred             hcCCCCcEEEeccCCCCCCCcCccchhhhcCCCCCcEEEeecccCCccCcccCccccCCCCCcEEecccccccCCCCCCC
Q 039475           57 FDAKKLRSLSLFYDSKGQSAASPVLQGLFDQLTCLRALKIEELWYGDQTIEIPKGLENLIHLRYLKLSAVEELSETCYCP  136 (286)
Q Consensus        57 ~~l~~Lr~L~l~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~i~~lP~~i~~L~~Lr~L~L~~~~~LP~~~~~~  136 (286)
                      .++.+|+.|++.++....      ++. +..+++|++|++++    +.+..++ .++.+++|++|++++          +
T Consensus        43 ~~L~~L~~L~l~~~~i~~------l~~-l~~l~~L~~L~L~~----n~i~~l~-~~~~l~~L~~L~l~~----------n  100 (210)
T d1h6ta2          43 NELNSIDQIIANNSDIKS------VQG-IQYLPNVTKLFLNG----NKLTDIK-PLANLKNLGWLFLDE----------N  100 (210)
T ss_dssp             HHHHTCCEEECTTSCCCC------CTT-GGGCTTCCEEECCS----SCCCCCG-GGTTCTTCCEEECCS----------S
T ss_pred             HHhcCccEEECcCCCCCC------chh-HhhCCCCCEEeCCC----ccccCcc-ccccCcccccccccc----------c
Confidence            357789999999987643      333 68899999999999    9999887 589999999999986          6


Q ss_pred             CCcccccccccccCCCEEEecCCCcccccccccccccccccccccccccCCccCCCCCCcccccCcccccceeEEcccCC
Q 039475          137 SLKRLPQGRGKLINLRHLIFDKDYLAYMANGFERLTSLRTLSGFTVARVGGKYSSEACNLEGLRNLNHLRQFLRICGLGN  216 (286)
Q Consensus       137 ~l~~LP~~i~~L~~L~~L~l~~~~~~~lP~~i~~L~~L~~L~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~~L~i~~l~~  216 (286)
                      .++.+| .++++++|+.|++.++.+..++ .+..+++++.+.+..+...         .+..+..+++|+ .+.+.+..-
T Consensus       101 ~i~~l~-~l~~l~~L~~L~l~~~~~~~~~-~l~~l~~l~~l~~~~n~l~---------~~~~~~~l~~L~-~l~l~~n~l  168 (210)
T d1h6ta2         101 KVKDLS-SLKDLKKLKSLSLEHNGISDIN-GLVHLPQLESLYLGNNKIT---------DITVLSRLTKLD-TLSLEDNQI  168 (210)
T ss_dssp             CCCCGG-GGTTCTTCCEEECTTSCCCCCG-GGGGCTTCCEEECCSSCCC---------CCGGGGGCTTCS-EEECCSSCC
T ss_pred             cccccc-cccccccccccccccccccccc-ccccccccccccccccccc---------cccccccccccc-ccccccccc
Confidence            788888 5899999999999998887764 6888889998887665432         334455666666 677764421


Q ss_pred             cccchhhhhhcCCCCCCceEEEEeCCCC
Q 039475          217 LQMRLKINAHLEKKKNLVHLTLDFDKGE  244 (286)
Q Consensus       217 ~~~~~~~~~~l~~l~~L~~L~L~~~~~~  244 (286)
                         .+ + ..+.++++|+.|++++|..+
T Consensus       169 ---~~-i-~~l~~l~~L~~L~Ls~N~i~  191 (210)
T d1h6ta2         169 ---SD-I-VPLAGLTKLQNLYLSKNHIS  191 (210)
T ss_dssp             ---CC-C-GGGTTCTTCCEEECCSSCCC
T ss_pred             ---cc-c-ccccCCCCCCEEECCCCCCC
Confidence               11 1 24888999999999999876

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.44  E-value=5.4e-13  Score=107.69  Aligned_cols=149  Identities=17%  Similarity=0.202  Sum_probs=95.0

Q ss_pred             hcCCCCcEEEeccCCCCCCCcCccchhhhcCCCCCcEEEeecccCCccCcccCccccCCCCCcEEecccccccCCCCCCC
Q 039475           57 FDAKKLRSLSLFYDSKGQSAASPVLQGLFDQLTCLRALKIEELWYGDQTIEIPKGLENLIHLRYLKLSAVEELSETCYCP  136 (286)
Q Consensus        57 ~~l~~Lr~L~l~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~i~~lP~~i~~L~~Lr~L~L~~~~~LP~~~~~~  136 (286)
                      .++.++++|.+.++....      ++ .+..+++|++|++++    |.+..++. ++++++|++|++++          +
T Consensus        37 ~~l~~l~~L~l~~~~i~~------l~-~l~~l~nL~~L~Ls~----N~l~~~~~-l~~l~~L~~L~l~~----------n   94 (199)
T d2omxa2          37 TDLDQVTTLQADRLGIKS------ID-GVEYLNNLTQINFSN----NQLTDITP-LKNLTKLVDILMNN----------N   94 (199)
T ss_dssp             HHHTTCCEEECTTSCCCC------CT-TGGGCTTCCEEECCS----SCCCCCGG-GTTCTTCCEEECCS----------S
T ss_pred             HHhcCCCEEECCCCCCCC------cc-ccccCCCcCcCcccc----ccccCccc-ccCCcccccccccc----------c
Confidence            356677777777765432      32 256777777777777    77776664 77777777777764          4


Q ss_pred             CCcccccccccccCCCEEEecCCCcccccccccccccccccccccccccCCccCCCCCCcccccCcccccceeEEcccCC
Q 039475          137 SLKRLPQGRGKLINLRHLIFDKDYLAYMANGFERLTSLRTLSGFTVARVGGKYSSEACNLEGLRNLNHLRQFLRICGLGN  216 (286)
Q Consensus       137 ~l~~LP~~i~~L~~L~~L~l~~~~~~~lP~~i~~L~~L~~L~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~~L~i~~l~~  216 (286)
                      .+..+| .+.++++|+.|++.++....++ .++.+++|+.|++..+...         .+..+..+++|+ .|.+.+.. 
T Consensus        95 ~~~~~~-~l~~l~~L~~L~l~~~~~~~~~-~~~~l~~L~~L~l~~n~l~---------~~~~l~~~~~L~-~L~l~~n~-  161 (199)
T d2omxa2          95 QIADIT-PLANLTNLTGLTLFNNQITDID-PLKNLTNLNRLELSSNTIS---------DISALSGLTSLQ-QLNFSSNQ-  161 (199)
T ss_dssp             CCCCCG-GGTTCTTCSEEECCSSCCCCCG-GGTTCTTCSEEECCSSCCC---------CCGGGTTCTTCS-EEECCSSC-
T ss_pred             cccccc-cccccccccccccccccccccc-ccchhhhhHHhhhhhhhhc---------cccccccccccc-cccccccc-
Confidence            566665 3677777777777776665543 4667777777776655322         233455556666 56665431 


Q ss_pred             cccchhhhhhcCCCCCCceEEEEeCCCC
Q 039475          217 LQMRLKINAHLEKKKNLVHLTLDFDKGE  244 (286)
Q Consensus       217 ~~~~~~~~~~l~~l~~L~~L~L~~~~~~  244 (286)
                      +..   + ..+.++++|++|++++|+.+
T Consensus       162 l~~---l-~~l~~l~~L~~L~ls~N~i~  185 (199)
T d2omxa2         162 VTD---L-KPLANLTTLERLDISSNKVS  185 (199)
T ss_dssp             CCC---C-GGGTTCTTCCEEECCSSCCC
T ss_pred             ccC---C-ccccCCCCCCEEECCCCCCC
Confidence            111   1 23677888888888888765

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.43  E-value=2.2e-12  Score=104.04  Aligned_cols=161  Identities=22%  Similarity=0.213  Sum_probs=125.2

Q ss_pred             cCCceEEEeecCCCCCCchhhhcCCCCcEEEeccCCCCCCCcCccchhhhcCCCCCcEEEeecccCCccCcccCccccCC
Q 039475           36 QEKLRHLTLMLGLPTKFPVSIFDAKKLRSLSLFYDSKGQSAASPVLQGLFDQLTCLRALKIEELWYGDQTIEIPKGLENL  115 (286)
Q Consensus        36 ~~~~r~ls~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~i~~lP~~i~~L  115 (286)
                      ..+++.+.+..+.+..+ +.+..+++|++|++++|....      ++. +++++.|++|++++    +.+..+| .++++
T Consensus        39 l~~l~~L~l~~~~i~~l-~~l~~l~nL~~L~Ls~N~l~~------~~~-l~~l~~L~~L~l~~----n~~~~~~-~l~~l  105 (199)
T d2omxa2          39 LDQVTTLQADRLGIKSI-DGVEYLNNLTQINFSNNQLTD------ITP-LKNLTKLVDILMNN----NQIADIT-PLANL  105 (199)
T ss_dssp             HTTCCEEECTTSCCCCC-TTGGGCTTCCEEECCSSCCCC------CGG-GTTCTTCCEEECCS----SCCCCCG-GGTTC
T ss_pred             hcCCCEEECCCCCCCCc-cccccCCCcCcCccccccccC------ccc-ccCCcccccccccc----ccccccc-ccccc
Confidence            35789999998887665 457889999999999997653      443 78999999999999    8888877 58999


Q ss_pred             CCCcEEecccccccCCCCCCCCCcccccccccccCCCEEEecCCCcccccccccccccccccccccccccCCccCCCCCC
Q 039475          116 IHLRYLKLSAVEELSETCYCPSLKRLPQGRGKLINLRHLIFDKDYLAYMANGFERLTSLRTLSGFTVARVGGKYSSEACN  195 (286)
Q Consensus       116 ~~Lr~L~L~~~~~LP~~~~~~~l~~LP~~i~~L~~L~~L~l~~~~~~~lP~~i~~L~~L~~L~~~~~~~~~~~~~~~~~~  195 (286)
                      .+|++|++++          .....++ .+.++++|+.|++++|.+..+| .+..+++|+.|.+..+...         .
T Consensus       106 ~~L~~L~l~~----------~~~~~~~-~~~~l~~L~~L~l~~n~l~~~~-~l~~~~~L~~L~l~~n~l~---------~  164 (199)
T d2omxa2         106 TNLTGLTLFN----------NQITDID-PLKNLTNLNRLELSSNTISDIS-ALSGLTSLQQLNFSSNQVT---------D  164 (199)
T ss_dssp             TTCSEEECCS----------SCCCCCG-GGTTCTTCSEEECCSSCCCCCG-GGTTCTTCSEEECCSSCCC---------C
T ss_pred             cccccccccc----------ccccccc-ccchhhhhHHhhhhhhhhcccc-ccccccccccccccccccc---------C
Confidence            9999999985          4444443 5788999999999999888775 5889999999988776433         3


Q ss_pred             cccccCcccccceeEEcccCCcccchhhhhhcCCCCCCceE
Q 039475          196 LEGLRNLNHLRQFLRICGLGNLQMRLKINAHLEKKKNLVHL  236 (286)
Q Consensus       196 ~~~l~~L~~L~~~L~i~~l~~~~~~~~~~~~l~~l~~L~~L  236 (286)
                      +..++++++|+ .|.+.+.. +..   + ..+.++++|++|
T Consensus       165 l~~l~~l~~L~-~L~ls~N~-i~~---i-~~l~~L~~L~~L  199 (199)
T d2omxa2         165 LKPLANLTTLE-RLDISSNK-VSD---I-SVLAKLTNLESL  199 (199)
T ss_dssp             CGGGTTCTTCC-EEECCSSC-CCC---C-GGGGGCTTCSEE
T ss_pred             CccccCCCCCC-EEECCCCC-CCC---C-ccccCCCCCCcC
Confidence            45577888888 88887642 222   1 246778888875

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=99.42  E-value=9.6e-14  Score=119.69  Aligned_cols=187  Identities=13%  Similarity=0.115  Sum_probs=132.9

Q ss_pred             cCCceEEEeec-CCC-CCCchhhhcCCCCcEEEeccCCCCCCCcCccchhhhcCCCCCcEEEeecccCCcc-CcccCccc
Q 039475           36 QEKLRHLTLML-GLP-TKFPVSIFDAKKLRSLSLFYDSKGQSAASPVLQGLFDQLTCLRALKIEELWYGDQ-TIEIPKGL  112 (286)
Q Consensus        36 ~~~~r~ls~~~-~~~-~~~~~~~~~l~~Lr~L~l~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~-i~~lP~~i  112 (286)
                      ....+++.+.. +.. ..+|..+.++++|++|+++++.....     .+..+..+..|+++++++    +. ...+|.++
T Consensus        75 L~~L~~L~Ls~~N~l~g~iP~~i~~L~~L~~L~Ls~N~l~~~-----~~~~~~~~~~L~~l~l~~----N~~~~~~p~~l  145 (313)
T d1ogqa_          75 LPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGA-----IPDFLSQIKTLVTLDFSY----NALSGTLPPSI  145 (313)
T ss_dssp             CTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEE-----CCGGGGGCTTCCEEECCS----SEEESCCCGGG
T ss_pred             Cccccccccccccccccccccccccccccchhhhcccccccc-----ccccccchhhhccccccc----ccccccCchhh
Confidence            35689999975 554 47899999999999999999986543     667788999999999999    77 44789999


Q ss_pred             cCCCCCcEEeccc---ccccCCC-CCC-----------CCCc-ccccccccccCCCEEEecCCCcc-ccccccccccccc
Q 039475          113 ENLIHLRYLKLSA---VEELSET-CYC-----------PSLK-RLPQGRGKLINLRHLIFDKDYLA-YMANGFERLTSLR  175 (286)
Q Consensus       113 ~~L~~Lr~L~L~~---~~~LP~~-~~~-----------~~l~-~LP~~i~~L~~L~~L~l~~~~~~-~lP~~i~~L~~L~  175 (286)
                      +++++|+++++++   ...+|.. +.+           +.+. ..|..++++.. ..+++..+... .+|..++.+++|+
T Consensus       146 ~~l~~L~~l~l~~n~l~~~ip~~~~~l~~l~~~l~~~~n~l~~~~~~~~~~l~~-~~l~l~~~~~~~~~~~~~~~~~~l~  224 (313)
T d1ogqa_         146 SSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNL-AFVDLSRNMLEGDASVLFGSDKNTQ  224 (313)
T ss_dssp             GGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCCC-SEEECCSSEEEECCGGGCCTTSCCS
T ss_pred             ccCcccceeecccccccccccccccccccccccccccccccccccccccccccc-ccccccccccccccccccccccccc
Confidence            9999999999988   3367765 422           2222 23455555543 35666665555 4566678888888


Q ss_pred             ccccccccccCCccCCCCCCcccccCcccccceeEEcccCCcccchhhhhhcCCCCCCceEEEEeCCCC
Q 039475          176 TLSGFTVARVGGKYSSEACNLEGLRNLNHLRQFLRICGLGNLQMRLKINAHLEKKKNLVHLTLDFDKGE  244 (286)
Q Consensus       176 ~L~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~~L~i~~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~  244 (286)
                      .+....+...        ..+..++.+++|+ .|.+.+.   .-.+.+|..++++++|++|+|+.|+.+
T Consensus       225 ~l~~~~~~l~--------~~~~~~~~~~~L~-~L~Ls~N---~l~g~iP~~l~~L~~L~~L~Ls~N~l~  281 (313)
T d1ogqa_         225 KIHLAKNSLA--------FDLGKVGLSKNLN-GLDLRNN---RIYGTLPQGLTQLKFLHSLNVSFNNLC  281 (313)
T ss_dssp             EEECCSSEEC--------CBGGGCCCCTTCC-EEECCSS---CCEECCCGGGGGCTTCCEEECCSSEEE
T ss_pred             cccccccccc--------ccccccccccccc-cccCccC---eecccCChHHhCCCCCCEEECcCCccc
Confidence            8877666543        2344566666666 6666532   114456777888888888888888765

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.40  E-value=4.4e-13  Score=100.08  Aligned_cols=100  Identities=22%  Similarity=0.220  Sum_probs=75.3

Q ss_pred             cEEEeccCCCCCCCcCccchhhhcCCCCCcEEEeecccCCccCcccCccccCCCCCcEEecccccccCCCCCCCCCcccc
Q 039475           63 RSLSLFYDSKGQSAASPVLQGLFDQLTCLRALKIEELWYGDQTIEIPKGLENLIHLRYLKLSAVEELSETCYCPSLKRLP  142 (286)
Q Consensus        63 r~L~l~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~i~~lP~~i~~L~~Lr~L~L~~~~~LP~~~~~~~l~~LP  142 (286)
                      |+|+++++....      ++. +..+..|++|++++    |.++.+|++++.+.+|++|++++          +.++.+|
T Consensus         1 R~L~Ls~n~l~~------l~~-l~~l~~L~~L~ls~----N~l~~lp~~~~~l~~L~~L~l~~----------N~i~~l~   59 (124)
T d1dcea3           1 RVLHLAHKDLTV------LCH-LEQLLLVTHLDLSH----NRLRALPPALAALRCLEVLQASD----------NALENVD   59 (124)
T ss_dssp             SEEECTTSCCSS------CCC-GGGGTTCCEEECCS----SCCCCCCGGGGGCTTCCEEECCS----------SCCCCCG
T ss_pred             CEEEcCCCCCCC------Ccc-cccCCCCCEEECCC----CccCcchhhhhhhhccccccccc----------ccccccC
Confidence            677888887653      443 67788888888888    88888888888888888888875          6677776


Q ss_pred             cccccccCCCEEEecCCCcccccc--cccccccccccccccccc
Q 039475          143 QGRGKLINLRHLIFDKDYLAYMAN--GFERLTSLRTLSGFTVAR  184 (286)
Q Consensus       143 ~~i~~L~~L~~L~l~~~~~~~lP~--~i~~L~~L~~L~~~~~~~  184 (286)
                       +++++++|++|++++|.+..+|.  .++.+++|++|++.++..
T Consensus        60 -~~~~l~~L~~L~l~~N~i~~~~~~~~l~~~~~L~~L~l~~N~i  102 (124)
T d1dcea3          60 -GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSL  102 (124)
T ss_dssp             -GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGG
T ss_pred             -ccccccccCeEECCCCccCCCCCchhhcCCCCCCEEECCCCcC
Confidence             47888888888888888877653  477777888877765543

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.37  E-value=1.2e-11  Score=101.45  Aligned_cols=175  Identities=16%  Similarity=0.188  Sum_probs=129.4

Q ss_pred             cCCceEEEeecCCCCCCchhhhcCCCCcEEEeccCCCCCCCcCccchhhhcCCCCCcEEEeecccCCccCcccCccccCC
Q 039475           36 QEKLRHLTLMLGLPTKFPVSIFDAKKLRSLSLFYDSKGQSAASPVLQGLFDQLTCLRALKIEELWYGDQTIEIPKGLENL  115 (286)
Q Consensus        36 ~~~~r~ls~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~i~~lP~~i~~L  115 (286)
                      ..+++.+++..+.+..+ +.+..+++|+.|+++++....      ++. +.+++.|++|++++    +.++.++ .++++
T Consensus        40 l~~L~~L~l~~~~i~~l-~~l~~l~~L~~L~ls~n~i~~------~~~-l~~l~~l~~l~~~~----n~~~~i~-~l~~l  106 (227)
T d1h6ua2          40 LDGITTLSAFGTGVTTI-EGVQYLNNLIGLELKDNQITD------LAP-LKNLTKITELELSG----NPLKNVS-AIAGL  106 (227)
T ss_dssp             HHTCCEEECTTSCCCCC-TTGGGCTTCCEEECCSSCCCC------CGG-GTTCCSCCEEECCS----CCCSCCG-GGTTC
T ss_pred             cCCcCEEECCCCCCCcc-hhHhcCCCCcEeecCCceeec------ccc-cccccccccccccc----ccccccc-ccccc
Confidence            35789999999888777 468899999999999997653      332 78999999999999    8888776 68999


Q ss_pred             CCCcEEeccc--ccccCCC-C---------CCCCCcccccccccccCCCEEEecCCCccccccccccccccccccccccc
Q 039475          116 IHLRYLKLSA--VEELSET-C---------YCPSLKRLPQGRGKLINLRHLIFDKDYLAYMANGFERLTSLRTLSGFTVA  183 (286)
Q Consensus       116 ~~Lr~L~L~~--~~~LP~~-~---------~~~~l~~LP~~i~~L~~L~~L~l~~~~~~~lP~~i~~L~~L~~L~~~~~~  183 (286)
                      ++|+++++++  ...++.. .         .+..+... ..+.++++|++|++.+|.+...+ .++++++|++|++..+.
T Consensus       107 ~~L~~l~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-~~~~~~~~L~~L~l~~n~~~~~~-~l~~l~~L~~L~Ls~n~  184 (227)
T d1h6ua2         107 QSIKTLDLTSTQITDVTPLAGLSNLQVLYLDLNQITNI-SPLAGLTNLQYLSIGNAQVSDLT-PLANLSKLTTLKADDNK  184 (227)
T ss_dssp             TTCCEEECTTSCCCCCGGGTTCTTCCEEECCSSCCCCC-GGGGGCTTCCEEECCSSCCCCCG-GGTTCTTCCEEECCSSC
T ss_pred             ccccccccccccccccchhccccchhhhhchhhhhchh-hhhccccccccccccccccccch-hhcccccceecccCCCc
Confidence            9999999987  3332221 1         22223333 24678889999999988877654 48899999999987764


Q ss_pred             ccCCccCCCCCCcccccCcccccceeEEcccCCcccchhhhhhcCCCCCCceEEEEe
Q 039475          184 RVGGKYSSEACNLEGLRNLNHLRQFLRICGLGNLQMRLKINAHLEKKKNLVHLTLDF  240 (286)
Q Consensus       184 ~~~~~~~~~~~~~~~l~~L~~L~~~L~i~~l~~~~~~~~~~~~l~~l~~L~~L~L~~  240 (286)
                      ..         .+..++++++|+ .|.+.+. .+..   + ..+.++++|+.|+++.
T Consensus       185 l~---------~l~~l~~l~~L~-~L~Ls~N-~lt~---i-~~l~~l~~L~~L~lsn  226 (227)
T d1h6ua2         185 IS---------DISPLASLPNLI-EVHLKNN-QISD---V-SPLANTSNLFIVTLTN  226 (227)
T ss_dssp             CC---------CCGGGGGCTTCC-EEECTTS-CCCB---C-GGGTTCTTCCEEEEEE
T ss_pred             cC---------CChhhcCCCCCC-EEECcCC-cCCC---C-cccccCCCCCEEEeeC
Confidence            32         345577777777 7888764 2322   1 2478899999999873

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.33  E-value=4e-12  Score=94.72  Aligned_cols=104  Identities=21%  Similarity=0.169  Sum_probs=89.5

Q ss_pred             eEEEeecCCCCCCchhhhcCCCCcEEEeccCCCCCCCcCccchhhhcCCCCCcEEEeecccCCccCcccCccccCCCCCc
Q 039475           40 RHLTLMLGLPTKFPVSIFDAKKLRSLSLFYDSKGQSAASPVLQGLFDQLTCLRALKIEELWYGDQTIEIPKGLENLIHLR  119 (286)
Q Consensus        40 r~ls~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~i~~lP~~i~~L~~Lr  119 (286)
                      |.+.+..+.+..++ .+..+++|+.|++++|....      +|..|..+++|++|++++    |.+..+| +++++++|+
T Consensus         1 R~L~Ls~n~l~~l~-~l~~l~~L~~L~ls~N~l~~------lp~~~~~l~~L~~L~l~~----N~i~~l~-~~~~l~~L~   68 (124)
T d1dcea3           1 RVLHLAHKDLTVLC-HLEQLLLVTHLDLSHNRLRA------LPPALAALRCLEVLQASD----NALENVD-GVANLPRLQ   68 (124)
T ss_dssp             SEEECTTSCCSSCC-CGGGGTTCCEEECCSSCCCC------CCGGGGGCTTCCEEECCS----SCCCCCG-GGTTCSSCC
T ss_pred             CEEEcCCCCCCCCc-ccccCCCCCEEECCCCccCc------chhhhhhhhccccccccc----ccccccC-ccccccccC
Confidence            56788888887665 47899999999999998753      777789999999999999    9999987 599999999


Q ss_pred             EEecccccccCCCCCCCCCcccc--cccccccCCCEEEecCCCccccc
Q 039475          120 YLKLSAVEELSETCYCPSLKRLP--QGRGKLINLRHLIFDKDYLAYMA  165 (286)
Q Consensus       120 ~L~L~~~~~LP~~~~~~~l~~LP--~~i~~L~~L~~L~l~~~~~~~lP  165 (286)
                      +|++++          +.+..+|  ..++++++|++|++++|.+...+
T Consensus        69 ~L~l~~----------N~i~~~~~~~~l~~~~~L~~L~l~~N~i~~~~  106 (124)
T d1dcea3          69 ELLLCN----------NRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEE  106 (124)
T ss_dssp             EEECCS----------SCCCSSSTTGGGGGCTTCCEEECTTSGGGGSS
T ss_pred             eEECCC----------CccCCCCCchhhcCCCCCCEEECCCCcCCcCc
Confidence            999986          7788776  36889999999999999887554

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.33  E-value=8.2e-13  Score=103.23  Aligned_cols=106  Identities=21%  Similarity=0.243  Sum_probs=70.1

Q ss_pred             hhcCCCCcEEEeccCCCCCCCcCccchhhhcCCCCCcEEEeecccCCccCcccCccccCCCCCcEEecccccccCCCCCC
Q 039475           56 IFDAKKLRSLSLFYDSKGQSAASPVLQGLFDQLTCLRALKIEELWYGDQTIEIPKGLENLIHLRYLKLSAVEELSETCYC  135 (286)
Q Consensus        56 ~~~l~~Lr~L~l~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~i~~lP~~i~~L~~Lr~L~L~~~~~LP~~~~~  135 (286)
                      +.+..++|.|++.++....      ++..+..+++|++|+|++    |.+..++ .++.+++|++|++++          
T Consensus        14 ~~n~~~lr~L~L~~n~I~~------i~~~~~~l~~L~~L~Ls~----N~i~~l~-~~~~l~~L~~L~ls~----------   72 (162)
T d1a9na_          14 YTNAVRDRELDLRGYKIPV------IENLGATLDQFDAIDFSD----NEIRKLD-GFPLLRRLKTLLVNN----------   72 (162)
T ss_dssp             EECTTSCEEEECTTSCCCS------CCCGGGGTTCCSEEECCS----SCCCEEC-CCCCCSSCCEEECCS----------
T ss_pred             ccCcCcCcEEECCCCCCCc------cCccccccccCCEEECCC----CCCCccC-CcccCcchhhhhccc----------
Confidence            4556677777777776543      455556677777777777    7777764 467777777777774          


Q ss_pred             CCCccccccc-ccccCCCEEEecCCCcccccc--cccccccccccccccc
Q 039475          136 PSLKRLPQGR-GKLINLRHLIFDKDYLAYMAN--GFERLTSLRTLSGFTV  182 (286)
Q Consensus       136 ~~l~~LP~~i-~~L~~L~~L~l~~~~~~~lP~--~i~~L~~L~~L~~~~~  182 (286)
                      +.+..+|..+ ..+++|++|++++|.+..++.  .+..+++|++|++..+
T Consensus        73 N~i~~l~~~~~~~l~~L~~L~L~~N~i~~~~~l~~l~~l~~L~~L~l~~N  122 (162)
T d1a9na_          73 NRICRIGEGLDQALPDLTELILTNNSLVELGDLDPLASLKSLTYLCILRN  122 (162)
T ss_dssp             SCCCEECSCHHHHCTTCCEEECCSCCCCCGGGGGGGGGCTTCCEEECCSS
T ss_pred             ccccCCCccccccccccccceeccccccccccccccccccccchhhcCCC
Confidence            5566776554 567777777777777766653  3566666666665544

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.32  E-value=2.9e-12  Score=100.05  Aligned_cols=126  Identities=19%  Similarity=0.142  Sum_probs=106.8

Q ss_pred             cCCceEEEeecCCCCCCchhhhcCCCCcEEEeccCCCCCCCcCccchhhhcCCCCCcEEEeecccCCccCcccCccc-cC
Q 039475           36 QEKLRHLTLMLGLPTKFPVSIFDAKKLRSLSLFYDSKGQSAASPVLQGLFDQLTCLRALKIEELWYGDQTIEIPKGL-EN  114 (286)
Q Consensus        36 ~~~~r~ls~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~i~~lP~~i-~~  114 (286)
                      +.+.|.+.+.++.+..++..+..+++|+.|++++|....      ++ .|..++.|++|++++    |.+..+|..+ ..
T Consensus        17 ~~~lr~L~L~~n~I~~i~~~~~~l~~L~~L~Ls~N~i~~------l~-~~~~l~~L~~L~ls~----N~i~~l~~~~~~~   85 (162)
T d1a9na_          17 AVRDRELDLRGYKIPVIENLGATLDQFDAIDFSDNEIRK------LD-GFPLLRRLKTLLVNN----NRICRIGEGLDQA   85 (162)
T ss_dssp             TTSCEEEECTTSCCCSCCCGGGGTTCCSEEECCSSCCCE------EC-CCCCCSSCCEEECCS----SCCCEECSCHHHH
T ss_pred             cCcCcEEECCCCCCCccCccccccccCCEEECCCCCCCc------cC-CcccCcchhhhhccc----ccccCCCcccccc
Confidence            456899999999998888777889999999999998653      43 378999999999999    9999998765 67


Q ss_pred             CCCCcEEecccccccCCCCCCCCCccccc--ccccccCCCEEEecCCCcccccc----cccccccccccccccc
Q 039475          115 LIHLRYLKLSAVEELSETCYCPSLKRLPQ--GRGKLINLRHLIFDKDYLAYMAN----GFERLTSLRTLSGFTV  182 (286)
Q Consensus       115 L~~Lr~L~L~~~~~LP~~~~~~~l~~LP~--~i~~L~~L~~L~l~~~~~~~lP~----~i~~L~~L~~L~~~~~  182 (286)
                      +++|++|++++          +.++.++.  .+.++++|++|++.+|.+...|.    -++.+++|+.|+...+
T Consensus        86 l~~L~~L~L~~----------N~i~~~~~l~~l~~l~~L~~L~l~~N~i~~~~~~r~~~i~~lp~L~~LD~~~i  149 (162)
T d1a9na_          86 LPDLTELILTN----------NSLVELGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLDFQKV  149 (162)
T ss_dssp             CTTCCEEECCS----------CCCCCGGGGGGGGGCTTCCEEECCSSGGGGSTTHHHHHHHHCTTCSEETTEEC
T ss_pred             ccccccceecc----------ccccccccccccccccccchhhcCCCccccccchHHHHHHHCCCcCeeCCCCC
Confidence            99999999996          66877774  67899999999999999988874    3788899999886554

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.28  E-value=8e-12  Score=100.05  Aligned_cols=124  Identities=23%  Similarity=0.270  Sum_probs=90.3

Q ss_pred             EEEeecCCCCCCchhhhcCCCCcEEEeccCCCCCCCcCccchhhhcCCCCCcEEEeecccCCccCcccC-ccccCCCCCc
Q 039475           41 HLTLMLGLPTKFPVSIFDAKKLRSLSLFYDSKGQSAASPVLQGLFDQLTCLRALKIEELWYGDQTIEIP-KGLENLIHLR  119 (286)
Q Consensus        41 ~ls~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~i~~lP-~~i~~L~~Lr  119 (286)
                      .+.-..+....+|..+  .++++.|++++|......    .+..|.++++|+.|+|++    +.+..++ ..+..+..|+
T Consensus        12 ~v~Cs~~~L~~iP~~l--p~~l~~L~Ls~N~i~~~~----~~~~f~~l~~L~~L~L~~----N~i~~~~~~~~~~~~~L~   81 (192)
T d1w8aa_          12 TVDCTGRGLKEIPRDI--PLHTTELLLNDNELGRIS----SDGLFGRLPHLVKLELKR----NQLTGIEPNAFEGASHIQ   81 (192)
T ss_dssp             EEECTTSCCSSCCSCC--CTTCSEEECCSCCCCSBC----CSCSGGGCTTCCEEECCS----SCCCCBCTTTTTTCTTCC
T ss_pred             EEEEeCCCcCccCCCC--CCCCCEEEeCCCCCcccc----cccccCCCceEeeeeccc----cccccccccccccccccc
Confidence            3444455556667655  367888888888764321    455678888888888888    8777554 4677888888


Q ss_pred             EEecccccccCCCCCCCCCccccc-ccccccCCCEEEecCCCccccccc-ccccccccccccccccc
Q 039475          120 YLKLSAVEELSETCYCPSLKRLPQ-GRGKLINLRHLIFDKDYLAYMANG-FERLTSLRTLSGFTVAR  184 (286)
Q Consensus       120 ~L~L~~~~~LP~~~~~~~l~~LP~-~i~~L~~L~~L~l~~~~~~~lP~~-i~~L~~L~~L~~~~~~~  184 (286)
                      +|+|++          +.++.+|. .|.++++|++|++++|.+..+|++ |..+++|++|++..+..
T Consensus        82 ~L~Ls~----------N~l~~l~~~~F~~l~~L~~L~L~~N~l~~i~~~~f~~l~~L~~l~L~~N~~  138 (192)
T d1w8aa_          82 ELQLGE----------NKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPF  138 (192)
T ss_dssp             EEECCS----------CCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCB
T ss_pred             eeeecc----------ccccccCHHHHhCCCcccccccCCccccccCHHHhcCCccccccccccccc
Confidence            888885          67887765 468888888888888888888765 78888888888766543

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.27  E-value=5.7e-11  Score=104.03  Aligned_cols=175  Identities=20%  Similarity=0.193  Sum_probs=122.8

Q ss_pred             CCceEEEeecCCCCCCchhhhcCCCCcEEEeccCCCCCCCcCccchhhhcCCCCCcEEEeecccCCccCcccCccccCCC
Q 039475           37 EKLRHLTLMLGLPTKFPVSIFDAKKLRSLSLFYDSKGQSAASPVLQGLFDQLTCLRALKIEELWYGDQTIEIPKGLENLI  116 (286)
Q Consensus        37 ~~~r~ls~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~i~~lP~~i~~L~  116 (286)
                      .+.+.+.+..+....+++ ....++|+.|.+.++....      ++ .+..++.|++|++++    +.+..++ .++.++
T Consensus       197 ~~~~~l~l~~n~i~~~~~-~~~~~~L~~L~l~~n~l~~------~~-~l~~l~~L~~L~l~~----n~l~~~~-~~~~~~  263 (384)
T d2omza2         197 TNLESLIATNNQISDITP-LGILTNLDELSLNGNQLKD------IG-TLASLTNLTDLDLAN----NQISNLA-PLSGLT  263 (384)
T ss_dssp             TTCSEEECCSSCCCCCGG-GGGCTTCCEEECCSSCCCC------CG-GGGGCTTCSEEECCS----SCCCCCG-GGTTCT
T ss_pred             cccceeeccCCccCCCCc-ccccCCCCEEECCCCCCCC------cc-hhhcccccchhcccc----CccCCCC-cccccc
Confidence            456667777666655443 4567888888888886542      33 467888899999998    8888776 488888


Q ss_pred             CCcEEeccc--ccccCCC-C---------CCCCCcccccccccccCCCEEEecCCCcccccccccccccccccccccccc
Q 039475          117 HLRYLKLSA--VEELSET-C---------YCPSLKRLPQGRGKLINLRHLIFDKDYLAYMANGFERLTSLRTLSGFTVAR  184 (286)
Q Consensus       117 ~Lr~L~L~~--~~~LP~~-~---------~~~~l~~LP~~i~~L~~L~~L~l~~~~~~~lP~~i~~L~~L~~L~~~~~~~  184 (286)
                      +|++|++++  +..++.. .         ..+.+..++ .+..+.++++|++++|++..++ .+..+++|++|++..+..
T Consensus       264 ~L~~L~l~~~~l~~~~~~~~~~~l~~l~~~~n~l~~~~-~~~~~~~l~~L~ls~n~l~~l~-~l~~l~~L~~L~L~~n~l  341 (384)
T d2omza2         264 KLTELKLGANQISNISPLAGLTALTNLELNENQLEDIS-PISNLKNLTYLTLYFNNISDIS-PVSSLTKLQRLFFANNKV  341 (384)
T ss_dssp             TCSEEECCSSCCCCCGGGTTCTTCSEEECCSSCCSCCG-GGGGCTTCSEEECCSSCCSCCG-GGGGCTTCCEEECCSSCC
T ss_pred             cCCEeeccCcccCCCCcccccccccccccccccccccc-ccchhcccCeEECCCCCCCCCc-ccccCCCCCEEECCCCCC
Confidence            999999987  5554433 2         223344443 5778889999999998888876 488899999998887753


Q ss_pred             cCCccCCCCCCcccccCcccccceeEEcccCCcccchhhhhhcCCCCCCceEEEEeC
Q 039475          185 VGGKYSSEACNLEGLRNLNHLRQFLRICGLGNLQMRLKINAHLEKKKNLVHLTLDFD  241 (286)
Q Consensus       185 ~~~~~~~~~~~~~~l~~L~~L~~~L~i~~l~~~~~~~~~~~~l~~l~~L~~L~L~~~  241 (286)
                      .         .+..++++++|+ .|.+.+.. +..   + ..+.++++|+.|+|+.|
T Consensus       342 ~---------~l~~l~~l~~L~-~L~l~~N~-l~~---l-~~l~~l~~L~~L~L~~N  383 (384)
T d2omza2         342 S---------DVSSLANLTNIN-WLSAGHNQ-ISD---L-TPLANLTRITQLGLNDQ  383 (384)
T ss_dssp             C---------CCGGGGGCTTCC-EEECCSSC-CCB---C-GGGTTCTTCSEEECCCE
T ss_pred             C---------CChhHcCCCCCC-EEECCCCc-CCC---C-hhhccCCCCCEeeCCCC
Confidence            3         244577777777 78877542 111   1 13788889999998765

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.27  E-value=2.4e-11  Score=102.93  Aligned_cols=133  Identities=24%  Similarity=0.316  Sum_probs=86.4

Q ss_pred             hhhcCCCCcEEEeccCCCCCCCcCccchhhhcCCCCCcEEEeecccCCccCcccCc-cccCCCCCcEEecccccccCCCC
Q 039475           55 SIFDAKKLRSLSLFYDSKGQSAASPVLQGLFDQLTCLRALKIEELWYGDQTIEIPK-GLENLIHLRYLKLSAVEELSETC  133 (286)
Q Consensus        55 ~~~~l~~Lr~L~l~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~i~~lP~-~i~~L~~Lr~L~L~~~~~LP~~~  133 (286)
                      .+.++++|++|++.++.....     .+..+..+..|+.+++++    +.++.+|. .+..+.+|+.|++++        
T Consensus       100 ~~~~l~~L~~L~l~~n~~~~~-----~~~~~~~~~~L~~l~l~~----N~l~~i~~~~f~~~~~L~~L~l~~--------  162 (284)
T d1ozna_         100 TFHGLGRLHTLHLDRCGLQEL-----GPGLFRGLAALQYLYLQD----NALQALPDDTFRDLGNLTHLFLHG--------  162 (284)
T ss_dssp             TTTTCTTCCEEECTTSCCCCC-----CTTTTTTCTTCCEEECCS----SCCCCCCTTTTTTCTTCCEEECCS--------
T ss_pred             hhcccccCCEEecCCcccccc-----cccccchhcccchhhhcc----ccccccChhHhccccchhhccccc--------
Confidence            344455555555555443221     233344455555555555    55555543 344555555555553        


Q ss_pred             CCCCCcccc-cccccccCCCEEEecCCCcccc-cccccccccccccccccccccCCccCCCCCCcccccCcccccceeEE
Q 039475          134 YCPSLKRLP-QGRGKLINLRHLIFDKDYLAYM-ANGFERLTSLRTLSGFTVARVGGKYSSEACNLEGLRNLNHLRQFLRI  211 (286)
Q Consensus       134 ~~~~l~~LP-~~i~~L~~L~~L~l~~~~~~~l-P~~i~~L~~L~~L~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~~L~i  211 (286)
                        +.++.+| ..+.++++|+++++.+|.+..+ |..|+.+++|++|++..+...       ......++.+.+|+ .|.+
T Consensus       163 --N~l~~l~~~~f~~l~~L~~l~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~i~-------~~~~~~~~~~~~L~-~L~l  232 (284)
T d1ozna_         163 --NRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLS-------ALPTEALAPLRALQ-YLRL  232 (284)
T ss_dssp             --SCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCS-------CCCHHHHTTCTTCC-EEEC
T ss_pred             --CcccccchhhhccccccchhhhhhccccccChhHhhhhhhcccccccccccc-------cccccccccccccC-EEEe
Confidence              4677775 5678999999999999999876 566999999999999877654       34445677788888 7888


Q ss_pred             ccc
Q 039475          212 CGL  214 (286)
Q Consensus       212 ~~l  214 (286)
                      .+.
T Consensus       233 ~~N  235 (284)
T d1ozna_         233 NDN  235 (284)
T ss_dssp             CSS
T ss_pred             cCC
Confidence            754

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.22  E-value=1.9e-10  Score=100.54  Aligned_cols=77  Identities=17%  Similarity=0.140  Sum_probs=65.6

Q ss_pred             cCCceEEEeecCCCCCCchhhhcCCCCcEEEeccCCCCCCCcCccchhhhcCCCCCcEEEeecccCCccCcccCccccCC
Q 039475           36 QEKLRHLTLMLGLPTKFPVSIFDAKKLRSLSLFYDSKGQSAASPVLQGLFDQLTCLRALKIEELWYGDQTIEIPKGLENL  115 (286)
Q Consensus        36 ~~~~r~ls~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~i~~lP~~i~~L  115 (286)
                      ..+++.+.+..+.+..+ +.+..+++|++|++++|....      ++. ++++++|++|++++    +.+..++ .++++
T Consensus        43 l~~l~~L~l~~~~I~~l-~gl~~L~nL~~L~Ls~N~l~~------l~~-l~~L~~L~~L~L~~----n~i~~i~-~l~~l  109 (384)
T d2omza2          43 LDQVTTLQADRLGIKSI-DGVEYLNNLTQINFSNNQLTD------ITP-LKNLTKLVDILMNN----NQIADIT-PLANL  109 (384)
T ss_dssp             HTTCCEEECCSSCCCCC-TTGGGCTTCCEEECCSSCCCC------CGG-GTTCTTCCEEECCS----SCCCCCG-GGTTC
T ss_pred             hCCCCEEECCCCCCCCc-cccccCCCCCEEeCcCCcCCC------Ccc-ccCCcccccccccc----ccccccc-ccccc
Confidence            35789999998888665 567889999999999997654      443 78999999999999    9998877 49999


Q ss_pred             CCCcEEeccc
Q 039475          116 IHLRYLKLSA  125 (286)
Q Consensus       116 ~~Lr~L~L~~  125 (286)
                      ++|++|++++
T Consensus       110 ~~L~~L~~~~  119 (384)
T d2omza2         110 TNLTGLTLFN  119 (384)
T ss_dssp             TTCCEEECCS
T ss_pred             cccccccccc
Confidence            9999999986

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.22  E-value=3.3e-11  Score=96.33  Aligned_cols=112  Identities=15%  Similarity=0.070  Sum_probs=95.7

Q ss_pred             ccCCceEEEeecCCCCC-C-chhhhcCCCCcEEEeccCCCCCCCcCccchhhhcCCCCCcEEEeecccCCccCcccCc-c
Q 039475           35 CQEKLRHLTLMLGLPTK-F-PVSIFDAKKLRSLSLFYDSKGQSAASPVLQGLFDQLTCLRALKIEELWYGDQTIEIPK-G  111 (286)
Q Consensus        35 ~~~~~r~ls~~~~~~~~-~-~~~~~~l~~Lr~L~l~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~i~~lP~-~  111 (286)
                      ++..+++|.+..+.+.. + +..|..+++|+.|++.++.....     .+..|..++.|++|+|++    |.+..+|. .
T Consensus        27 lp~~l~~L~Ls~N~i~~~~~~~~f~~l~~L~~L~L~~N~i~~~-----~~~~~~~~~~L~~L~Ls~----N~l~~l~~~~   97 (192)
T d1w8aa_          27 IPLHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGI-----EPNAFEGASHIQELQLGE----NKIKEISNKM   97 (192)
T ss_dssp             CCTTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCB-----CTTTTTTCTTCCEEECCS----CCCCEECSSS
T ss_pred             CCCCCCEEEeCCCCCcccccccccCCCceEeeeeccccccccc-----cccccccccccceeeecc----ccccccCHHH
Confidence            56789999999998853 3 45678999999999999987543     678899999999999999    99999876 6


Q ss_pred             ccCCCCCcEEecccccccCCCCCCCCCccccc-ccccccCCCEEEecCCCccccc
Q 039475          112 LENLIHLRYLKLSAVEELSETCYCPSLKRLPQ-GRGKLINLRHLIFDKDYLAYMA  165 (286)
Q Consensus       112 i~~L~~Lr~L~L~~~~~LP~~~~~~~l~~LP~-~i~~L~~L~~L~l~~~~~~~lP  165 (286)
                      |.++++|++|+|++          +.++.+|. .|..+++|++|++++|.+...+
T Consensus        98 F~~l~~L~~L~L~~----------N~l~~i~~~~f~~l~~L~~l~L~~N~~~~~~  142 (192)
T d1w8aa_          98 FLGLHQLKTLNLYD----------NQISCVMPGSFEHLNSLTSLNLASNPFNCNC  142 (192)
T ss_dssp             STTCTTCCEEECCS----------SCCCEECTTSSTTCTTCCEEECTTCCBCCSG
T ss_pred             HhCCCcccccccCC----------ccccccCHHHhcCCccccccccccccccccc
Confidence            89999999999996          78999875 4789999999999999876543

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.14  E-value=1.6e-10  Score=95.11  Aligned_cols=188  Identities=16%  Similarity=0.116  Sum_probs=122.0

Q ss_pred             ccCCceEEEeecCCCCCCch-hhhcCCCCcEEEeccCCCCCCCcCccchhhhcCCCCCcEEEeecccCCccCccc-Cccc
Q 039475           35 CQEKLRHLTLMLGLPTKFPV-SIFDAKKLRSLSLFYDSKGQSAASPVLQGLFDQLTCLRALKIEELWYGDQTIEI-PKGL  112 (286)
Q Consensus        35 ~~~~~r~ls~~~~~~~~~~~-~~~~l~~Lr~L~l~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~i~~l-P~~i  112 (286)
                      ++.+++.+.+..+.+..++. .|.++++|++|+++++.....    +.+..|.+++.+++|.+..+   +.+..+ +..+
T Consensus        27 l~~~l~~L~Ls~n~i~~l~~~~f~~l~~L~~L~ls~n~~~~~----i~~~~f~~l~~l~~l~~~~~---n~l~~~~~~~~   99 (242)
T d1xwdc1          27 LPRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEV----IEADVFSNLPKLHEIRIEKA---NNLLYINPEAF   99 (242)
T ss_dssp             SCSCCSEEEEESCCCCEECTTTTTTCTTCCEEEEESCTTCCE----ECSSSEESCTTCCEEEEECC---TTCCEECTTSE
T ss_pred             CCCCCCEEECcCCcCCccChhHhhccchhhhhhhccccccce----eecccccccccccccccccc---ccccccccccc
Confidence            45689999999998877765 578899999999999876432    13456888999999988751   345544 4567


Q ss_pred             cCCCCCcEEeccc--ccccCCC-C------------CCCCCcccc-ccccccc-CCCEEEecCCCccccccccccccccc
Q 039475          113 ENLIHLRYLKLSA--VEELSET-C------------YCPSLKRLP-QGRGKLI-NLRHLIFDKDYLAYMANGFERLTSLR  175 (286)
Q Consensus       113 ~~L~~Lr~L~L~~--~~~LP~~-~------------~~~~l~~LP-~~i~~L~-~L~~L~l~~~~~~~lP~~i~~L~~L~  175 (286)
                      .++++|++|++++  +...|.. .            ....+..++ ..+..+. .++.|++.+|.+..++....+..+++
T Consensus       100 ~~l~~L~~l~l~~~~l~~~~~~~~~~~l~~l~~~~~~n~~l~~i~~~~~~~~~~~l~~L~l~~n~l~~i~~~~~~~~~l~  179 (242)
T d1xwdc1         100 QNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNCAFNGTQLD  179 (242)
T ss_dssp             ECCTTCCEEEEESCCCCSCCCCTTTCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCCEECTTTTTTCCEE
T ss_pred             cccccccccccchhhhcccccccccccccccccccccccccccccccccccccccceeeecccccccccccccccchhhh
Confidence            9999999999988  6665544 2            233344554 3344444 77888888888888877766666666


Q ss_pred             cccc-ccccccCCccCCCCCCcccccCcccccceeEEcccCCcccchhhhhhcCCCCCCceEEEEe
Q 039475          176 TLSG-FTVARVGGKYSSEACNLEGLRNLNHLRQFLRICGLGNLQMRLKINAHLEKKKNLVHLTLDF  240 (286)
Q Consensus       176 ~L~~-~~~~~~~~~~~~~~~~~~~l~~L~~L~~~L~i~~l~~~~~~~~~~~~l~~l~~L~~L~L~~  240 (286)
                      ++.. ..+...       .-....+.++++|+ .|.+.+.. +..  .-...+.++++|+.+++..
T Consensus       180 ~~~~l~~n~l~-------~l~~~~f~~l~~L~-~L~Ls~N~-l~~--l~~~~~~~l~~L~~l~~~~  234 (242)
T d1xwdc1         180 ELNLSDNNNLE-------ELPNDVFHGASGPV-ILDISRTR-IHS--LPSYGLENLKKLRARSTYN  234 (242)
T ss_dssp             EEECTTCTTCC-------CCCTTTTTTSCCCS-EEECTTSC-CCC--CCSSSCTTCCEEESSSEES
T ss_pred             ccccccccccc-------cccHHHhcCCCCCC-EEECCCCc-CCc--cCHHHHcCCcccccCcCCC
Confidence            5532 222211       11222356677777 77776432 111  1123466666776666643

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=99.09  E-value=2.1e-12  Score=104.24  Aligned_cols=109  Identities=20%  Similarity=0.205  Sum_probs=56.7

Q ss_pred             CCchhhhcCCCCcEEEeccCCCCCCCcCccchhhhcCCCCCcEEEeecccCCccCcccCccccCCCCCcEEecccccccC
Q 039475           51 KFPVSIFDAKKLRSLSLFYDSKGQSAASPVLQGLFDQLTCLRALKIEELWYGDQTIEIPKGLENLIHLRYLKLSAVEELS  130 (286)
Q Consensus        51 ~~~~~~~~l~~Lr~L~l~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~i~~lP~~i~~L~~Lr~L~L~~~~~LP  130 (286)
                      .++.++..+++|+.|+++++....      ++ .+.++++|++|+|++    |.+..+|..+..+..|++|++++     
T Consensus        39 ~l~~sl~~L~~L~~L~Ls~n~I~~------i~-~l~~l~~L~~L~Ls~----N~i~~i~~~~~~~~~L~~L~l~~-----  102 (198)
T d1m9la_          39 KMDATLSTLKACKHLALSTNNIEK------IS-SLSGMENLRILSLGR----NLIKKIENLDAVADTLEELWISY-----  102 (198)
T ss_dssp             CCHHHHHHTTTCCEEECSEEEESC------CC-CHHHHTTCCEEECCE----EEECSCSSHHHHHHHCCEEECSE-----
T ss_pred             hhhhHHhcccccceeECcccCCCC------cc-cccCCccccChhhcc----ccccccccccccccccccccccc-----
Confidence            344555555666666665554321      22 245555566666655    55555554444445555555553     


Q ss_pred             CCCCCCCCcccccccccccCCCEEEecCCCcccccc--ccccccccccccccc
Q 039475          131 ETCYCPSLKRLPQGRGKLINLRHLIFDKDYLAYMAN--GFERLTSLRTLSGFT  181 (286)
Q Consensus       131 ~~~~~~~l~~LP~~i~~L~~L~~L~l~~~~~~~lP~--~i~~L~~L~~L~~~~  181 (286)
                           +.++.++ .+.++++|++|++++|.+..++.  .++.+++|++|++.+
T Consensus       103 -----N~i~~l~-~~~~l~~L~~L~L~~N~i~~~~~~~~l~~l~~L~~L~L~~  149 (198)
T d1m9la_         103 -----NQIASLS-GIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAG  149 (198)
T ss_dssp             -----EECCCHH-HHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECS
T ss_pred             -----ccccccc-cccccccccccccccchhccccccccccCCCccceeecCC
Confidence                 3444443 35555556666665555554442  355555555555443

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.03  E-value=2.4e-09  Score=87.28  Aligned_cols=153  Identities=17%  Similarity=0.186  Sum_probs=106.6

Q ss_pred             ccCCceEEEeecCCCCCCchhhhcCCCCcEEEeccCCCCCCCcCccchhhhcCCCCCcEEEeecccCCccCcccCccccC
Q 039475           35 CQEKLRHLTLMLGLPTKFPVSIFDAKKLRSLSLFYDSKGQSAASPVLQGLFDQLTCLRALKIEELWYGDQTIEIPKGLEN  114 (286)
Q Consensus        35 ~~~~~r~ls~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~i~~lP~~i~~  114 (286)
                      ..++++++.+..+.+..+. .+.++++++++.+.++....      ++ .+.+++.|++|++++    +....++ .+..
T Consensus        61 ~l~~L~~L~ls~n~i~~~~-~l~~l~~l~~l~~~~n~~~~------i~-~l~~l~~L~~l~l~~----~~~~~~~-~~~~  127 (227)
T d1h6ua2          61 YLNNLIGLELKDNQITDLA-PLKNLTKITELELSGNPLKN------VS-AIAGLQSIKTLDLTS----TQITDVT-PLAG  127 (227)
T ss_dssp             GCTTCCEEECCSSCCCCCG-GGTTCCSCCEEECCSCCCSC------CG-GGTTCTTCCEEECTT----SCCCCCG-GGTT
T ss_pred             cCCCCcEeecCCceeeccc-cccccccccccccccccccc------cc-ccccccccccccccc----ccccccc-hhcc
Confidence            3578899999988876554 37889999999999886542      34 367889999999988    5544332 2444


Q ss_pred             CCCCcEEeccc--ccccCCC-C---------CCCCCcccccccccccCCCEEEecCCCcccccccccccccccccccccc
Q 039475          115 LIHLRYLKLSA--VEELSET-C---------YCPSLKRLPQGRGKLINLRHLIFDKDYLAYMANGFERLTSLRTLSGFTV  182 (286)
Q Consensus       115 L~~Lr~L~L~~--~~~LP~~-~---------~~~~l~~LP~~i~~L~~L~~L~l~~~~~~~lP~~i~~L~~L~~L~~~~~  182 (286)
                      ...++++.++.  +...+.. .         .++.+...+ .++++++|+.|++++|.+..+| .++++++|++|++..+
T Consensus       128 ~~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~-~l~~l~~L~~L~Ls~n~l~~l~-~l~~l~~L~~L~Ls~N  205 (227)
T d1h6ua2         128 LSNLQVLYLDLNQITNISPLAGLTNLQYLSIGNAQVSDLT-PLANLSKLTTLKADDNKISDIS-PLASLPNLIEVHLKNN  205 (227)
T ss_dssp             CTTCCEEECCSSCCCCCGGGGGCTTCCEEECCSSCCCCCG-GGTTCTTCCEEECCSSCCCCCG-GGGGCTTCCEEECTTS
T ss_pred             ccchhhhhchhhhhchhhhhccccccccccccccccccch-hhcccccceecccCCCccCCCh-hhcCCCCCCEEECcCC
Confidence            45555555544  2111111 0         234455444 4889999999999999998886 4999999999999887


Q ss_pred             cccCCccCCCCCCcccccCcccccceeEEc
Q 039475          183 ARVGGKYSSEACNLEGLRNLNHLRQFLRIC  212 (286)
Q Consensus       183 ~~~~~~~~~~~~~~~~l~~L~~L~~~L~i~  212 (286)
                      ...         .+..++++++|+ .|.+.
T Consensus       206 ~lt---------~i~~l~~l~~L~-~L~ls  225 (227)
T d1h6ua2         206 QIS---------DVSPLANTSNLF-IVTLT  225 (227)
T ss_dssp             CCC---------BCGGGTTCTTCC-EEEEE
T ss_pred             cCC---------CCcccccCCCCC-EEEee
Confidence            533         344577777777 77765

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.03  E-value=1e-09  Score=93.41  Aligned_cols=173  Identities=12%  Similarity=0.009  Sum_probs=110.6

Q ss_pred             CceEEEeecCCC---CCCchhhhcCCCCcEEEeccCCCCCCCcCccchhhhcCCCCCcEEEeecccCCccCc-ccCcccc
Q 039475           38 KLRHLTLMLGLP---TKFPVSIFDAKKLRSLSLFYDSKGQSAASPVLQGLFDQLTCLRALKIEELWYGDQTI-EIPKGLE  113 (286)
Q Consensus        38 ~~r~ls~~~~~~---~~~~~~~~~l~~Lr~L~l~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~i~-~lP~~i~  113 (286)
                      ..+.+.+..+..   ...+..+..+++|+.+.+.++....      +|..  .++.|+.|++++    +... ..+..+.
T Consensus       125 ~~~~l~~~~n~~~~~~~~~~~~~~l~~L~~l~l~~n~l~~------l~~~--~~~~L~~L~l~~----n~~~~~~~~~~~  192 (305)
T d1xkua_         125 QMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITT------IPQG--LPPSLTELHLDG----NKITKVDAASLK  192 (305)
T ss_dssp             TCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCCS------CCSS--CCTTCSEEECTT----SCCCEECTGGGT
T ss_pred             cccccccccccccccCCCccccccccccCccccccCCccc------cCcc--cCCccCEEECCC----CcCCCCChhHhh
Confidence            345555554433   2234567778889999988886543      3332  367888999988    7755 4566788


Q ss_pred             CCCCCcEEecccccccCCCCCCCCCcccc-cccccccCCCEEEecCCCcccccccccccccccccccccccccCCccCCC
Q 039475          114 NLIHLRYLKLSAVEELSETCYCPSLKRLP-QGRGKLINLRHLIFDKDYLAYMANGFERLTSLRTLSGFTVARVGGKYSSE  192 (286)
Q Consensus       114 ~L~~Lr~L~L~~~~~LP~~~~~~~l~~LP-~~i~~L~~L~~L~l~~~~~~~lP~~i~~L~~L~~L~~~~~~~~~~~~~~~  192 (286)
                      ++..+++|++++          +.+..+| ..+.++++|+.|++++|.++.+|.+|.++++|++|++..+....-. ...
T Consensus       193 ~~~~l~~L~~s~----------n~l~~~~~~~~~~l~~L~~L~L~~N~L~~lp~~l~~l~~L~~L~Ls~N~i~~i~-~~~  261 (305)
T d1xkua_         193 GLNNLAKLGLSF----------NSISAVDNGSLANTPHLRELHLNNNKLVKVPGGLADHKYIQVVYLHNNNISAIG-SND  261 (305)
T ss_dssp             TCTTCCEEECCS----------SCCCEECTTTGGGSTTCCEEECCSSCCSSCCTTTTTCSSCCEEECCSSCCCCCC-TTS
T ss_pred             cccccccccccc----------ccccccccccccccccceeeecccccccccccccccccCCCEEECCCCccCccC-hhh
Confidence            889999999985          5577764 5678888999999999988889888999999999988776543100 000


Q ss_pred             CCCcccccCcccccceeEEcccCCcccchhhhhhcCCCCCCce
Q 039475          193 ACNLEGLRNLNHLRQFLRICGLGNLQMRLKINAHLEKKKNLVH  235 (286)
Q Consensus       193 ~~~~~~l~~L~~L~~~L~i~~l~~~~~~~~~~~~l~~l~~L~~  235 (286)
                      -.....+..+.+|+ .|.+.+... ...+..+..+..+.....
T Consensus       262 f~~~~~~~~~~~L~-~L~L~~N~~-~~~~~~~~~f~~~~~~~~  302 (305)
T d1xkua_         262 FCPPGYNTKKASYS-GVSLFSNPV-QYWEIQPSTFRCVYVRAA  302 (305)
T ss_dssp             SSCSSCCTTSCCCS-EEECCSSSS-CGGGSCGGGGTTCCCGGG
T ss_pred             ccCcchhcccCCCC-EEECCCCcC-ccCcCCHhHhcccccCcc
Confidence            11222344555566 676664321 113334455555444433

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.99  E-value=5.1e-11  Score=101.17  Aligned_cols=179  Identities=15%  Similarity=0.086  Sum_probs=120.9

Q ss_pred             cCCceEEEeecCCCC--CCchhhhcCCCCcEEEeccCCCCCCCcCccchhhhcCCCCCcEEEeecccCCcc-Cc--ccCc
Q 039475           36 QEKLRHLTLMLGLPT--KFPVSIFDAKKLRSLSLFYDSKGQSAASPVLQGLFDQLTCLRALKIEELWYGDQ-TI--EIPK  110 (286)
Q Consensus        36 ~~~~r~ls~~~~~~~--~~~~~~~~l~~Lr~L~l~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~-i~--~lP~  110 (286)
                      ..+.+++.+..+.+.  .+...+..+++|++|.+.++.....     .+..+..+++|++|++++    +. ++  .+..
T Consensus        45 ~~~L~~LdLs~~~i~~~~l~~l~~~c~~L~~L~L~~~~l~~~-----~~~~l~~~~~L~~L~Ls~----c~~itd~~l~~  115 (284)
T d2astb2          45 PFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDP-----IVNTLAKNSNLVRLNLSG----CSGFSEFALQT  115 (284)
T ss_dssp             CBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHH-----HHHHHTTCTTCSEEECTT----CBSCCHHHHHH
T ss_pred             CCCCCEEECCCCccCHHHHHHHHHhCCCcccccccccCCCcH-----HHHHHhcCCCCcCccccc----cccccccccch
Confidence            456888888765542  2344567788999999988864322     455677888999999988    54 44  2333


Q ss_pred             cccCCCCCcEEecccccccCCCCCCCCCcc--cccccccc-cCCCEEEecCC--Ccc--ccccccccccccccccccccc
Q 039475          111 GLENLIHLRYLKLSAVEELSETCYCPSLKR--LPQGRGKL-INLRHLIFDKD--YLA--YMANGFERLTSLRTLSGFTVA  183 (286)
Q Consensus       111 ~i~~L~~Lr~L~L~~~~~LP~~~~~~~l~~--LP~~i~~L-~~L~~L~l~~~--~~~--~lP~~i~~L~~L~~L~~~~~~  183 (286)
                      -...+++|++|++++         |..+..  ++..+.+. ++|+.|++.++  .+.  .+..-..++++|++|++..+.
T Consensus       116 l~~~~~~L~~L~ls~---------c~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~i~~~~l~~l~~~~~~L~~L~L~~~~  186 (284)
T d2astb2         116 LLSSCSRLDELNLSW---------CFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSV  186 (284)
T ss_dssp             HHHHCTTCCEEECCC---------CTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCT
T ss_pred             hhHHHHhcccccccc---------ccccccccchhhhcccccccchhhhccccccccccccccccccccccccccccccc
Confidence            345688899999985         766642  34444444 58999999864  232  232234677899999987765


Q ss_pred             ccCCccCCCCCCcccccCcccccceeEEcccCCcccchhhhhhcCCCCCCceEEEEeC
Q 039475          184 RVGGKYSSEACNLEGLRNLNHLRQFLRICGLGNLQMRLKINAHLEKKKNLVHLTLDFD  241 (286)
Q Consensus       184 ~~~~~~~~~~~~~~~l~~L~~L~~~L~i~~l~~~~~~~~~~~~l~~l~~L~~L~L~~~  241 (286)
                      ..      ....+..+.++++|+ .|.+.++..+..  .....+.++++|+.|+++..
T Consensus       187 ~i------td~~~~~l~~~~~L~-~L~L~~C~~i~~--~~l~~L~~~~~L~~L~l~~~  235 (284)
T d2astb2         187 ML------KNDCFQEFFQLNYLQ-HLSLSRCYDIIP--ETLLELGEIPTLKTLQVFGI  235 (284)
T ss_dssp             TC------CGGGGGGGGGCTTCC-EEECTTCTTCCG--GGGGGGGGCTTCCEEECTTS
T ss_pred             CC------CchhhhhhcccCcCC-EEECCCCCCCCh--HHHHHHhcCCCCCEEeeeCC
Confidence            33      245667777888888 888886655433  33455778899999999765

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=98.96  E-value=2.4e-11  Score=97.85  Aligned_cols=149  Identities=18%  Similarity=0.190  Sum_probs=108.8

Q ss_pred             CcEEEeccCCCCCCCcCccchhhhcCCCCCcEEEeecccCCccCcccCccccCCCCCcEEecccccccCCCCCCCCCccc
Q 039475           62 LRSLSLFYDSKGQSAASPVLQGLFDQLTCLRALKIEELWYGDQTIEIPKGLENLIHLRYLKLSAVEELSETCYCPSLKRL  141 (286)
Q Consensus        62 Lr~L~l~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~i~~lP~~i~~L~~Lr~L~L~~~~~LP~~~~~~~l~~L  141 (286)
                      ++.+.+.+.......    ++..+..+++|++|+|++    +.+..++ .++.|++|++|++++          +.++.+
T Consensus        25 ~~~~~l~~~~~~i~~----l~~sl~~L~~L~~L~Ls~----n~I~~i~-~l~~l~~L~~L~Ls~----------N~i~~i   85 (198)
T d1m9la_          25 AEKVELHGMIPPIEK----MDATLSTLKACKHLALST----NNIEKIS-SLSGMENLRILSLGR----------NLIKKI   85 (198)
T ss_dssp             CSCEECCBCCTTCCC----CHHHHHHTTTCCEEECSE----EEESCCC-CHHHHTTCCEEECCE----------EEECSC
T ss_pred             cceeeeecccCchhh----hhhHHhcccccceeECcc----cCCCCcc-cccCCccccChhhcc----------cccccc
Confidence            445555554322211    677889999999999999    9999986 699999999999996          668888


Q ss_pred             ccccccccCCCEEEecCCCcccccccccccccccccccccccccCCccCCCCCCcccccCcccccceeEEcccCCccc-c
Q 039475          142 PQGRGKLINLRHLIFDKDYLAYMANGFERLTSLRTLSGFTVARVGGKYSSEACNLEGLRNLNHLRQFLRICGLGNLQM-R  220 (286)
Q Consensus       142 P~~i~~L~~L~~L~l~~~~~~~lP~~i~~L~~L~~L~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~~L~i~~l~~~~~-~  220 (286)
                      |..+..+.+|++|++++|.+..++ ++..+++|++|++..+...      ....+..++.+++|+ .|.+.+..-... .
T Consensus        86 ~~~~~~~~~L~~L~l~~N~i~~l~-~~~~l~~L~~L~L~~N~i~------~~~~~~~l~~l~~L~-~L~L~~N~l~~~~~  157 (198)
T d1m9la_          86 ENLDAVADTLEELWISYNQIASLS-GIEKLVNLRVLYMSNNKIT------NWGEIDKLAALDKLE-DLLLAGNPLYNDYK  157 (198)
T ss_dssp             SSHHHHHHHCCEEECSEEECCCHH-HHHHHHHSSEEEESEEECC------CHHHHHHHTTTTTCS-EEEECSSHHHHHHC
T ss_pred             cccccccccccccccccccccccc-cccccccccccccccchhc------cccccccccCCCccc-eeecCCCccccCcc
Confidence            876777789999999999998874 5899999999999877644      122345678888888 898875421111 0


Q ss_pred             h------hhhhhcCCCCCCceEE
Q 039475          221 L------KINAHLEKKKNLVHLT  237 (286)
Q Consensus       221 ~------~~~~~l~~l~~L~~L~  237 (286)
                      .      .....+..+++|+.|+
T Consensus       158 ~~~~~~~~r~~vi~~lp~L~~LD  180 (198)
T d1m9la_         158 ENNATSEYRIEVVKRLPNLKKLD  180 (198)
T ss_dssp             TTTTHHHHHHHHHHHCSSCCEES
T ss_pred             cccchhhHHHHHHHHCCCcCEeC
Confidence            0      0112356788888875

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.94  E-value=3.4e-10  Score=95.90  Aligned_cols=159  Identities=18%  Similarity=0.159  Sum_probs=98.8

Q ss_pred             cCCCCcEEEeccCCCCCCCcCccchhhhcCCCCCcEEEeecccCCccCc-ccCccccCCCCCcEEecccccccCCCCCCC
Q 039475           58 DAKKLRSLSLFYDSKGQSAASPVLQGLFDQLTCLRALKIEELWYGDQTI-EIPKGLENLIHLRYLKLSAVEELSETCYCP  136 (286)
Q Consensus        58 ~l~~Lr~L~l~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~i~-~lP~~i~~L~~Lr~L~L~~~~~LP~~~~~~  136 (286)
                      ...+|++|+++++......    +...+..+++|++|++++    +.+. ..+..++++++|++|++++         |.
T Consensus        44 ~~~~L~~LdLs~~~i~~~~----l~~l~~~c~~L~~L~L~~----~~l~~~~~~~l~~~~~L~~L~Ls~---------c~  106 (284)
T d2astb2          44 SPFRVQHMDLSNSVIEVST----LHGILSQCSKLQNLSLEG----LRLSDPIVNTLAKNSNLVRLNLSG---------CS  106 (284)
T ss_dssp             CCBCCCEEECTTCEECHHH----HHHHHTTBCCCSEEECTT----CBCCHHHHHHHTTCTTCSEEECTT---------CB
T ss_pred             cCCCCCEEECCCCccCHHH----HHHHHHhCCCcccccccc----cCCCcHHHHHHhcCCCCcCccccc---------cc
Confidence            4567888888876543211    556678888888888888    7654 4566778888888888884         66


Q ss_pred             CCcc--cccccccccCCCEEEecCC-Ccc--ccccccccc-ccccccccccccccCCccCCCCCCcccc-cCccccccee
Q 039475          137 SLKR--LPQGRGKLINLRHLIFDKD-YLA--YMANGFERL-TSLRTLSGFTVARVGGKYSSEACNLEGL-RNLNHLRQFL  209 (286)
Q Consensus       137 ~l~~--LP~~i~~L~~L~~L~l~~~-~~~--~lP~~i~~L-~~L~~L~~~~~~~~~~~~~~~~~~~~~l-~~L~~L~~~L  209 (286)
                      .++.  +..-+..+++|++|+++++ .+.  .++..+..+ ++|+.|.+..+....     ....+..+ .++++|+ .|
T Consensus       107 ~itd~~l~~l~~~~~~L~~L~ls~c~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~i-----~~~~l~~l~~~~~~L~-~L  180 (284)
T d2astb2         107 GFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNL-----QKSDLSTLVRRCPNLV-HL  180 (284)
T ss_dssp             SCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGS-----CHHHHHHHHHHCTTCS-EE
T ss_pred             cccccccchhhHHHHhccccccccccccccccchhhhcccccccchhhhccccccc-----cccccccccccccccc-cc
Confidence            6653  3333456788888888774 332  233334443 567877776543210     11222222 3456666 77


Q ss_pred             EEcccCCcccchhhhhhcCCCCCCceEEEEeC
Q 039475          210 RICGLGNLQMRLKINAHLEKKKNLVHLTLDFD  241 (286)
Q Consensus       210 ~i~~l~~~~~~~~~~~~l~~l~~L~~L~L~~~  241 (286)
                      .+.++..+  .+.....+.++++|++|+|++.
T Consensus       181 ~L~~~~~i--td~~~~~l~~~~~L~~L~L~~C  210 (284)
T d2astb2         181 DLSDSVML--KNDCFQEFFQLNYLQHLSLSRC  210 (284)
T ss_dssp             ECTTCTTC--CGGGGGGGGGCTTCCEEECTTC
T ss_pred             ccccccCC--CchhhhhhcccCcCCEEECCCC
Confidence            77654443  3334455667888888888764

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.94  E-value=2.3e-09  Score=88.06  Aligned_cols=117  Identities=17%  Similarity=0.276  Sum_probs=85.1

Q ss_pred             eEEEeecCCCCCCchhhhcCCCCcEEEeccCCCCCCCcCccchhhhcCCCCCcEEEeecccCCccCcc-cC-ccccCCCC
Q 039475           40 RHLTLMLGLPTKFPVSIFDAKKLRSLSLFYDSKGQSAASPVLQGLFDQLTCLRALKIEELWYGDQTIE-IP-KGLENLIH  117 (286)
Q Consensus        40 r~ls~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~i~~-lP-~~i~~L~~  117 (286)
                      +.+.........+|+.+  .+++++|+++++.....     .+..|.++++|++|++++    +.+.. +| ..+.++..
T Consensus        11 ~~i~c~~~~l~~iP~~l--~~~l~~L~Ls~n~i~~l-----~~~~f~~l~~L~~L~ls~----n~~~~~i~~~~f~~l~~   79 (242)
T d1xwdc1          11 RVFLCQESKVTEIPSDL--PRNAIELRFVLTKLRVI-----QKGAFSGFGDLEKIEISQ----NDVLEVIEADVFSNLPK   79 (242)
T ss_dssp             SEEEEESCSCSSCCSCS--CSCCSEEEEESCCCCEE-----CTTTTTTCTTCCEEEEES----CTTCCEECSSSEESCTT
T ss_pred             CEEEEeCCCCCCcCCCC--CCCCCEEECcCCcCCcc-----ChhHhhccchhhhhhhcc----ccccceeeccccccccc
Confidence            45555555666777765  36899999999876431     445789999999999999    88654 43 36789999


Q ss_pred             CcEEecccccccCCCCCCCCCcccc-cccccccCCCEEEecCCCccccccccccccccccc
Q 039475          118 LRYLKLSAVEELSETCYCPSLKRLP-QGRGKLINLRHLIFDKDYLAYMANGFERLTSLRTL  177 (286)
Q Consensus       118 Lr~L~L~~~~~LP~~~~~~~l~~LP-~~i~~L~~L~~L~l~~~~~~~lP~~i~~L~~L~~L  177 (286)
                      +++|.+..         ++.+..++ ..+.++++|++|++.++.+...|. +..+.+++.+
T Consensus        80 l~~l~~~~---------~n~l~~~~~~~~~~l~~L~~l~l~~~~l~~~~~-~~~~~~l~~l  130 (242)
T d1xwdc1          80 LHEIRIEK---------ANNLLYINPEAFQNLPNLQYLLISNTGIKHLPD-VHKIHSLQKV  130 (242)
T ss_dssp             CCEEEEEC---------CTTCCEECTTSEECCTTCCEEEEESCCCCSCCC-CTTTCBSSCE
T ss_pred             cccccccc---------cccccccccccccccccccccccchhhhccccc-cccccccccc
Confidence            99998874         56676665 457899999999999988876653 3333444433

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.90  E-value=3.4e-09  Score=81.60  Aligned_cols=102  Identities=18%  Similarity=0.085  Sum_probs=75.3

Q ss_pred             EEeecCCCCCCchhhhcCCCCcEEEeccCC-CCCCCcCccchhhhcCCCCCcEEEeecccCCccCcccC-ccccCCCCCc
Q 039475           42 LTLMLGLPTKFPVSIFDAKKLRSLSLFYDS-KGQSAASPVLQGLFDQLTCLRALKIEELWYGDQTIEIP-KGLENLIHLR  119 (286)
Q Consensus        42 ls~~~~~~~~~~~~~~~l~~Lr~L~l~~~~-~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~i~~lP-~~i~~L~~Lr  119 (286)
                      +....+.....|..+..+++|+.|++.++. ...     +.+..|.+++.|++|++++    +.+..++ ..+..+++|+
T Consensus        13 l~c~~~~~~~~p~~l~~l~~l~~L~l~~n~~l~~-----i~~~~f~~l~~L~~L~Ls~----N~l~~i~~~~f~~l~~L~   83 (156)
T d2ifga3          13 LRCTRDGALDSLHHLPGAENLTELYIENQQHLQH-----LELRDLRGLGELRNLTIVK----SGLRFVAPDAFHFTPRLS   83 (156)
T ss_dssp             EECCSSCCCTTTTTSCSCSCCSEEECCSCSSCCE-----ECGGGSCSCCCCSEEECCS----SCCCEECTTGGGSCSCCC
T ss_pred             EEecCCCCccCcccccCccccCeeecCCCccccc-----cCchhhccccccCcceeec----cccCCccccccccccccc
Confidence            444455555567777778888888887654 332     1456788888888888888    8888874 4678888888


Q ss_pred             EEecccccccCCCCCCCCCcccccccccccCCCEEEecCCCcc
Q 039475          120 YLKLSAVEELSETCYCPSLKRLPQGRGKLINLRHLIFDKDYLA  162 (286)
Q Consensus       120 ~L~L~~~~~LP~~~~~~~l~~LP~~i~~L~~L~~L~l~~~~~~  162 (286)
                      +|+|++          +.++.+|.++....+|++|++++|.+.
T Consensus        84 ~L~Ls~----------N~l~~l~~~~~~~~~l~~L~L~~Np~~  116 (156)
T d2ifga3          84 RLNLSF----------NALESLSWKTVQGLSLQELVLSGNPLH  116 (156)
T ss_dssp             EEECCS----------SCCSCCCSTTTCSCCCCEEECCSSCCC
T ss_pred             ceeccC----------CCCcccChhhhccccccccccCCCccc
Confidence            888886          778888877666667888888887663

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.83  E-value=7.9e-09  Score=79.47  Aligned_cols=104  Identities=18%  Similarity=0.040  Sum_probs=82.7

Q ss_pred             CCcEEEeccCCCCCCCcCccchhhhcCCCCCcEEEeecccCCcc-CcccCc-cccCCCCCcEEecccccccCCCCCCCCC
Q 039475           61 KLRSLSLFYDSKGQSAASPVLQGLFDQLTCLRALKIEELWYGDQ-TIEIPK-GLENLIHLRYLKLSAVEELSETCYCPSL  138 (286)
Q Consensus        61 ~Lr~L~l~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~-i~~lP~-~i~~L~~Lr~L~L~~~~~LP~~~~~~~l  138 (286)
                      ...++...++....      .|..+..++.|+.|++.+    +. ++.++. .|.++.+|+.|++++          +.+
T Consensus         9 ~~~~l~c~~~~~~~------~p~~l~~l~~l~~L~l~~----n~~l~~i~~~~f~~l~~L~~L~Ls~----------N~l   68 (156)
T d2ifga3           9 GSSGLRCTRDGALD------SLHHLPGAENLTELYIEN----QQHLQHLELRDLRGLGELRNLTIVK----------SGL   68 (156)
T ss_dssp             SSSCEECCSSCCCT------TTTTSCSCSCCSEEECCS----CSSCCEECGGGSCSCCCCSEEECCS----------SCC
T ss_pred             CCCeEEecCCCCcc------CcccccCccccCeeecCC----CccccccCchhhccccccCcceeec----------ccc
Confidence            34456666655432      566678899999999987    64 888875 689999999999996          789


Q ss_pred             cccc-cccccccCCCEEEecCCCcccccccccccccccccccccccc
Q 039475          139 KRLP-QGRGKLINLRHLIFDKDYLAYMANGFERLTSLRTLSGFTVAR  184 (286)
Q Consensus       139 ~~LP-~~i~~L~~L~~L~l~~~~~~~lP~~i~~L~~L~~L~~~~~~~  184 (286)
                      +.++ ..|..+++|++|++++|.++.+|.++-...+|++|++..+..
T Consensus        69 ~~i~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~~~l~~L~L~~Np~  115 (156)
T d2ifga3          69 RFVAPDAFHFTPRLSRLNLSFNALESLSWKTVQGLSLQELVLSGNPL  115 (156)
T ss_dssp             CEECTTGGGSCSCCCEEECCSSCCSCCCSTTTCSCCCCEEECCSSCC
T ss_pred             CCcccccccccccccceeccCCCCcccChhhhccccccccccCCCcc
Confidence            9985 558999999999999999999998855555788888776643

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=98.64  E-value=6.3e-08  Score=82.85  Aligned_cols=102  Identities=22%  Similarity=0.216  Sum_probs=49.9

Q ss_pred             ceEEEeecCCCCCCchhhhcCCCCcEEEeccCCCCCCCcCccchhhhcCCCCCcEEEeecccCCccCcccCccccCCCCC
Q 039475           39 LRHLTLMLGLPTKFPVSIFDAKKLRSLSLFYDSKGQSAASPVLQGLFDQLTCLRALKIEELWYGDQTIEIPKGLENLIHL  118 (286)
Q Consensus        39 ~r~ls~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~i~~lP~~i~~L~~L  118 (286)
                      .++|.+..+....+|+.   .++|++|++++|....      +|..   +.+|+.|++++    +.+..+++ +  ...|
T Consensus        40 l~~LdLs~~~L~~lp~~---~~~L~~L~Ls~N~l~~------lp~~---~~~L~~L~l~~----n~l~~l~~-l--p~~L  100 (353)
T d1jl5a_          40 AHELELNNLGLSSLPEL---PPHLESLVASCNSLTE------LPEL---PQSLKSLLVDN----NNLKALSD-L--PPLL  100 (353)
T ss_dssp             CSEEECTTSCCSCCCSC---CTTCSEEECCSSCCSS------CCCC---CTTCCEEECCS----SCCSCCCS-C--CTTC
T ss_pred             CCEEEeCCCCCCCCCCC---CCCCCEEECCCCCCcc------cccc---hhhhhhhhhhh----cccchhhh-h--cccc
Confidence            44555555554444432   3455555555554331      3332   23455555555    44444332 1  1235


Q ss_pred             cEEecccccccCCCCCCCCCcccccccccccCCCEEEecCCCcccccccccc
Q 039475          119 RYLKLSAVEELSETCYCPSLKRLPQGRGKLINLRHLIFDKDYLAYMANGFER  170 (286)
Q Consensus       119 r~L~L~~~~~LP~~~~~~~l~~LP~~i~~L~~L~~L~l~~~~~~~lP~~i~~  170 (286)
                      ++|++++          +.+..+|. ++++++|++|++.++.+...|..+..
T Consensus       101 ~~L~L~~----------n~l~~lp~-~~~l~~L~~L~l~~~~~~~~~~~~~~  141 (353)
T d1jl5a_         101 EYLGVSN----------NQLEKLPE-LQNSSFLKIIDVDNNSLKKLPDLPPS  141 (353)
T ss_dssp             CEEECCS----------SCCSSCCC-CTTCTTCCEEECCSSCCSCCCCCCTT
T ss_pred             ccccccc----------cccccccc-hhhhccceeecccccccccccccccc
Confidence            5555553          44555653 45566666666666555555444333

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=98.56  E-value=3.9e-07  Score=77.68  Aligned_cols=73  Identities=22%  Similarity=0.285  Sum_probs=37.7

Q ss_pred             cCCceEEEeecCCCCCCchhhhcCCCCcEEEeccCCCCCCCcCccchhhhcCCCCCcEEEeecccCCccCcccCccccCC
Q 039475           36 QEKLRHLTLMLGLPTKFPVSIFDAKKLRSLSLFYDSKGQSAASPVLQGLFDQLTCLRALKIEELWYGDQTIEIPKGLENL  115 (286)
Q Consensus        36 ~~~~r~ls~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~i~~lP~~i~~L  115 (286)
                      +..+++|.+..+.+..+|..   ..+|+.|.+.++....      ++..   ...|++|++++    +.+..+|. ++++
T Consensus        57 ~~~L~~L~Ls~N~l~~lp~~---~~~L~~L~l~~n~l~~------l~~l---p~~L~~L~L~~----n~l~~lp~-~~~l  119 (353)
T d1jl5a_          57 PPHLESLVASCNSLTELPEL---PQSLKSLLVDNNNLKA------LSDL---PPLLEYLGVSN----NQLEKLPE-LQNS  119 (353)
T ss_dssp             CTTCSEEECCSSCCSSCCCC---CTTCCEEECCSSCCSC------CCSC---CTTCCEEECCS----SCCSSCCC-CTTC
T ss_pred             CCCCCEEECCCCCCcccccc---hhhhhhhhhhhcccch------hhhh---ccccccccccc----cccccccc-hhhh
Confidence            34556666655555555533   3455666665554332      2211   12456666666    55555553 4556


Q ss_pred             CCCcEEeccc
Q 039475          116 IHLRYLKLSA  125 (286)
Q Consensus       116 ~~Lr~L~L~~  125 (286)
                      .+|++|++++
T Consensus       120 ~~L~~L~l~~  129 (353)
T d1jl5a_         120 SFLKIIDVDN  129 (353)
T ss_dssp             TTCCEEECCS
T ss_pred             ccceeecccc
Confidence            6666666653

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=98.19  E-value=3.8e-07  Score=78.47  Aligned_cols=99  Identities=13%  Similarity=0.038  Sum_probs=44.8

Q ss_pred             ccccccccCCCEEEecCCCccc------ccccccccccccccccccccccCCccCCCCCCcccccCcccccceeEEcccC
Q 039475          142 PQGRGKLINLRHLIFDKDYLAY------MANGFERLTSLRTLSGFTVARVGGKYSSEACNLEGLRNLNHLRQFLRICGLG  215 (286)
Q Consensus       142 P~~i~~L~~L~~L~l~~~~~~~------lP~~i~~L~~L~~L~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~~L~i~~l~  215 (286)
                      ...+...+.|+.|+++.|.+..      +...+..+++|++|++..+......   .......+...++|+ .|.+.++.
T Consensus       179 ~~~l~~~~~L~~L~L~~n~i~~~g~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g---~~~L~~~l~~~~~L~-~L~Ls~n~  254 (344)
T d2ca6a1         179 AKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLG---SSALAIALKSWPNLR-ELGLNDCL  254 (344)
T ss_dssp             HHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHH---HHHHHHHGGGCTTCC-EEECTTCC
T ss_pred             cchhhhhhhhcccccccccccccccccchhhhhcchhhhcccccccccccccc---cccccccccccccch-hhhhhcCc
Confidence            3344555666666666665542      2233555666666665544321000   000112234445555 55555432


Q ss_pred             Cccc-chhhhhhcCC--CCCCceEEEEeCCCC
Q 039475          216 NLQM-RLKINAHLEK--KKNLVHLTLDFDKGE  244 (286)
Q Consensus       216 ~~~~-~~~~~~~l~~--l~~L~~L~L~~~~~~  244 (286)
                      -... ...+...+..  ...|++|++++|..+
T Consensus       255 i~~~g~~~l~~~l~~~~~~~L~~L~ls~N~i~  286 (344)
T d2ca6a1         255 LSARGAAAVVDAFSKLENIGLQTLRLQYNEIE  286 (344)
T ss_dssp             CCHHHHHHHHHHHHTCSSCCCCEEECCSSCCB
T ss_pred             cCchhhHHHHHHhhhccCCCCCEEECCCCcCC
Confidence            1111 2233333332  245666666666654

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=98.17  E-value=8.4e-07  Score=76.24  Aligned_cols=96  Identities=17%  Similarity=0.167  Sum_probs=63.5

Q ss_pred             cccccccccCCCEEEecCCCccc-----ccccccccccccccccccccccCCccCCCCCCcc----cccC--ccccccee
Q 039475          141 LPQGRGKLINLRHLIFDKDYLAY-----MANGFERLTSLRTLSGFTVARVGGKYSSEACNLE----GLRN--LNHLRQFL  209 (286)
Q Consensus       141 LP~~i~~L~~L~~L~l~~~~~~~-----lP~~i~~L~~L~~L~~~~~~~~~~~~~~~~~~~~----~l~~--L~~L~~~L  209 (286)
                      +...+...++|++|++++|.+..     +...+...++|++|.+..+...       .....    .+..  -..|+ .|
T Consensus       207 l~~~l~~~~~L~~L~Ls~N~i~~~g~~~L~~~l~~~~~L~~L~Ls~n~i~-------~~g~~~l~~~l~~~~~~~L~-~L  278 (344)
T d2ca6a1         207 LLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLS-------ARGAAAVVDAFSKLENIGLQ-TL  278 (344)
T ss_dssp             HHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCC-------HHHHHHHHHHHHTCSSCCCC-EE
T ss_pred             hhhhhcchhhhcccccccccccccccccccccccccccchhhhhhcCccC-------chhhHHHHHHhhhccCCCCC-EE
Confidence            34457788999999999987642     4456788899999988777543       11111    1222  23466 67


Q ss_pred             EEcccCCccc--chhhhhhcC-CCCCCceEEEEeCCCCC
Q 039475          210 RICGLGNLQM--RLKINAHLE-KKKNLVHLTLDFDKGED  245 (286)
Q Consensus       210 ~i~~l~~~~~--~~~~~~~l~-~l~~L~~L~L~~~~~~~  245 (286)
                      .+.+.. +..  ...+...+. +.++|++|+|++|....
T Consensus       279 ~ls~N~-i~~~~~~~l~~~l~~~~~~L~~L~l~~N~~~~  316 (344)
T d2ca6a1         279 RLQYNE-IELDAVRTLKTVIDEKMPDLLFLELNGNRFSE  316 (344)
T ss_dssp             ECCSSC-CBHHHHHHHHHHHHHHCTTCCEEECTTSBSCT
T ss_pred             ECCCCc-CChHHHHHHHHHHHccCCCCCEEECCCCcCCC
Confidence            777653 222  344555564 57889999999998864

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.71  E-value=3.4e-06  Score=64.63  Aligned_cols=87  Identities=22%  Similarity=0.257  Sum_probs=60.1

Q ss_pred             chhhhcCCCCCcEEEeecccCCccCcccC---ccccCCCCCcEEecccccccCCCCCCCCCccccc-ccccccCCCEEEe
Q 039475           81 LQGLFDQLTCLRALKIEELWYGDQTIEIP---KGLENLIHLRYLKLSAVEELSETCYCPSLKRLPQ-GRGKLINLRHLIF  156 (286)
Q Consensus        81 ~~~~~~~l~~Lr~L~L~~~~~~~~i~~lP---~~i~~L~~Lr~L~L~~~~~LP~~~~~~~l~~LP~-~i~~L~~L~~L~l  156 (286)
                      ++..+..++.|++|+|++    |.++.++   ..+..+++|++|+|++          +.++.++. ...+..+|+.|++
T Consensus        57 l~~~~~~~~~L~~L~Ls~----N~i~~l~~~~~~~~~l~~L~~L~Ls~----------N~i~~l~~l~~l~~~~L~~L~L  122 (162)
T d1koha1          57 LRIIEENIPELLSLNLSN----NRLYRLDDMSSIVQKAPNLKILNLSG----------NELKSERELDKIKGLKLEELWL  122 (162)
T ss_dssp             HHHHHHHCTTCCCCCCCS----SCCCCCSGGGTHHHHSTTCCCCCCTT----------SCCCCGGGHHHHTTCCCSSCCC
T ss_pred             hHHHHHhCCCCCEeeCCC----ccccCCchhHHHHhhCCccccccccc----------Cccccchhhhhhhccccceeec
Confidence            444556788899999998    8877654   4567788888888886          66777765 2334457888888


Q ss_pred             cCCCcccccc--------ccccccccccccccc
Q 039475          157 DKDYLAYMAN--------GFERLTSLRTLSGFT  181 (286)
Q Consensus       157 ~~~~~~~lP~--------~i~~L~~L~~L~~~~  181 (286)
                      .+|.+.....        -+..+++|+.|+...
T Consensus       123 ~~Npl~~~~~~~~~y~~~i~~~~P~L~~LDg~~  155 (162)
T d1koha1         123 DGNSLSDTFRDQSTYISAIRERFPKLLRLDGHE  155 (162)
T ss_dssp             TTSTTSSSSSSHHHHHHHHHTTSTTCCEETTEE
T ss_pred             CCCCcCcCcccchhHHHHHHHHCCCCCEECcCC
Confidence            8887764321        145677777776543

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.52  E-value=1.6e-05  Score=69.66  Aligned_cols=111  Identities=14%  Similarity=0.175  Sum_probs=78.9

Q ss_pred             CceEEEeecCCCCC--CchhhhcCCCCcEEEeccCCCCCCCcCccchhhhcCCCCCcEEEeecccCCccCcc-----cCc
Q 039475           38 KLRHLTLMLGLPTK--FPVSIFDAKKLRSLSLFYDSKGQSAASPVLQGLFDQLTCLRALKIEELWYGDQTIE-----IPK  110 (286)
Q Consensus        38 ~~r~ls~~~~~~~~--~~~~~~~l~~Lr~L~l~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~i~~-----lP~  110 (286)
                      +++.|.+..+.+..  +...+..++++|+|.+.++...... ...+...+..++.|++|||++    +.+..     +..
T Consensus         3 ~l~~ld~~~~~i~~~~~~~l~~~l~~l~~L~L~~~~i~~~~-~~~l~~~L~~~~~L~~LdLs~----N~i~~~~~~~l~~   77 (460)
T d1z7xw1           3 DIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEAR-CKDISSALRVNPALAELNLRS----NELGDVGVHCVLQ   77 (460)
T ss_dssp             EEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHH-HHHHHHHHHTCTTCCEEECTT----CCCHHHHHHHHHH
T ss_pred             CCCEEEeeCCcCChHHHHHHHHhCCCCCEEEeCCCCCCHHH-HHHHHHHHhcCCCCCEEECcC----CcCChHHHHHHHH
Confidence            46778888877743  2445677899999999999754211 011556678999999999999    88752     333


Q ss_pred             cccC-CCCCcEEecccccccCCCCCCCCCc-----ccccccccccCCCEEEecCCCccc
Q 039475          111 GLEN-LIHLRYLKLSAVEELSETCYCPSLK-----RLPQGRGKLINLRHLIFDKDYLAY  163 (286)
Q Consensus       111 ~i~~-L~~Lr~L~L~~~~~LP~~~~~~~l~-----~LP~~i~~L~~L~~L~l~~~~~~~  163 (286)
                      .+.. ...|++|+|++         | .+.     .++..+..+++|++|++.+|.+..
T Consensus        78 ~l~~~~~~L~~L~L~~---------n-~it~~~~~~l~~~l~~~~~L~~L~L~~N~i~~  126 (460)
T d1z7xw1          78 GLQTPSCKIQKLSLQN---------C-CLTGAGCGVLSSTLRTLPTLQELHLSDNLLGD  126 (460)
T ss_dssp             TTCSTTCCCCEEECTT---------S-CCBGGGHHHHHHHTTSCTTCCEEECCSSBCHH
T ss_pred             HHhcCCCCCCEEECCC---------C-Cccccccccccchhhccccccccccccccchh
Confidence            3322 35799999986         3 343     367778889999999999987764

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.40  E-value=8e-06  Score=71.60  Aligned_cols=184  Identities=18%  Similarity=0.111  Sum_probs=104.4

Q ss_pred             CCceEEEeecCCCC------CCchhhhcCCCCcEEEeccCCCCCCCcCccchhhhcCCCCCcEEEeecccCCccCcc---
Q 039475           37 EKLRHLTLMLGLPT------KFPVSIFDAKKLRSLSLFYDSKGQSAASPVLQGLFDQLTCLRALKIEELWYGDQTIE---  107 (286)
Q Consensus        37 ~~~r~ls~~~~~~~------~~~~~~~~l~~Lr~L~l~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~i~~---  107 (286)
                      ...+++.+..+...      ...........++.+++.++....... ......+...+.++.+++++    +.+..   
T Consensus       226 ~~~~~l~~~~n~~~~~~~~~~~~~~~~~~~~l~~l~l~~n~i~~~~~-~~~~~~l~~~~~l~~l~l~~----n~i~~~~~  300 (460)
T d1z7xw1         226 ASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGC-GDLCRVLRAKESLKELSLAG----NELGDEGA  300 (460)
T ss_dssp             TTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHH-HHHHHHHHHCTTCCEEECTT----CCCHHHHH
T ss_pred             ccccccchhhccccccccchhhccccccccccccccccccccccccc-cccccccccccccccccccc----cccccccc
Confidence            55777877766541      112233456788899988876532110 00223456678888888888    76542   


Q ss_pred             --cCccc-cCCCCCcEEecccccccCCCCCCCCCc-----ccccccccccCCCEEEecCCCcc-----ccccccc-cccc
Q 039475          108 --IPKGL-ENLIHLRYLKLSAVEELSETCYCPSLK-----RLPQGRGKLINLRHLIFDKDYLA-----YMANGFE-RLTS  173 (286)
Q Consensus       108 --lP~~i-~~L~~Lr~L~L~~~~~LP~~~~~~~l~-----~LP~~i~~L~~L~~L~l~~~~~~-----~lP~~i~-~L~~  173 (286)
                        +...+ .....|+++++++         | .+.     .+...+...++|++|++++|.+.     .++..+. ..+.
T Consensus       301 ~~l~~~l~~~~~~L~~l~l~~---------~-~l~~~~~~~l~~~~~~~~~L~~L~Ls~N~i~~~g~~~l~~~l~~~~~~  370 (460)
T d1z7xw1         301 RLLCETLLEPGCQLESLWVKS---------C-SFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSV  370 (460)
T ss_dssp             HHHHHHHTSTTCCCCEEECTT---------S-CCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCC
T ss_pred             chhhccccccccccccccccc---------c-chhhhhhhhcccccccccchhhhheeeecccCcccchhhhhhhcccCC
Confidence              22222 2345788888875         2 232     23334455668888888888764     2344443 3456


Q ss_pred             ccccccccccccCCccCCCCCC----cccccCcccccceeEEcccCCccc--chhhhhhcC-CCCCCceEEEEeCCCC
Q 039475          174 LRTLSGFTVARVGGKYSSEACN----LEGLRNLNHLRQFLRICGLGNLQM--RLKINAHLE-KKKNLVHLTLDFDKGE  244 (286)
Q Consensus       174 L~~L~~~~~~~~~~~~~~~~~~----~~~l~~L~~L~~~L~i~~l~~~~~--~~~~~~~l~-~l~~L~~L~L~~~~~~  244 (286)
                      |++|++..+...       ...    ...+...++|+ +|.+.+. .+..  ...+...+. +.+.|+.|.+..+...
T Consensus       371 L~~L~Ls~n~i~-------~~~~~~l~~~l~~~~~L~-~L~Ls~N-~i~~~g~~~l~~~l~~~~~~L~~l~l~~~~~~  439 (460)
T d1z7xw1         371 LRVLWLADCDVS-------DSSCSSLAATLLANHSLR-ELDLSNN-CLGDAGILQLVESVRQPGCLLEQLVLYDIYWS  439 (460)
T ss_dssp             CCEEECTTSCCC-------HHHHHHHHHHHHHCCCCC-EEECCSS-SCCHHHHHHHHHHHTSTTCCCCEEECTTCCCC
T ss_pred             CCEEECCCCCCC-------hHHHHHHHHHHhcCCCCC-EEECCCC-cCCHHHHHHHHHHHHhCCCccCEEECCCCCCC
Confidence            888887766543       111    12244445666 6777654 2222  233444454 3346888888877654

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.24  E-value=3.9e-05  Score=58.40  Aligned_cols=84  Identities=17%  Similarity=0.086  Sum_probs=61.3

Q ss_pred             hhhcCCCCcEEEeccCCCCCCCcCccchhhhcCCCCCcEEEeecccCCccCcccCc-cccCCCCCcEEecccccccCCCC
Q 039475           55 SIFDAKKLRSLSLFYDSKGQSAASPVLQGLFDQLTCLRALKIEELWYGDQTIEIPK-GLENLIHLRYLKLSAVEELSETC  133 (286)
Q Consensus        55 ~~~~l~~Lr~L~l~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~i~~lP~-~i~~L~~Lr~L~L~~~~~LP~~~  133 (286)
                      .+..+++|++|++++|.......   ++..+..++.|++|+|++    |.+..+++ ......+|+.|++++        
T Consensus        60 ~~~~~~~L~~L~Ls~N~i~~l~~---~~~~~~~l~~L~~L~Ls~----N~i~~l~~l~~l~~~~L~~L~L~~--------  124 (162)
T d1koha1          60 IEENIPELLSLNLSNNRLYRLDD---MSSIVQKAPNLKILNLSG----NELKSERELDKIKGLKLEELWLDG--------  124 (162)
T ss_dssp             HHHHCTTCCCCCCCSSCCCCCSG---GGTHHHHSTTCCCCCCTT----SCCCCGGGHHHHTTCCCSSCCCTT--------
T ss_pred             HHHhCCCCCEeeCCCccccCCch---hHHHHhhCCccccccccc----CccccchhhhhhhccccceeecCC--------
Confidence            34579999999999998764322   566778999999999999    99998876 223445789999986        


Q ss_pred             CCCCCcccc--------cccccccCCCEEE
Q 039475          134 YCPSLKRLP--------QGRGKLINLRHLI  155 (286)
Q Consensus       134 ~~~~l~~LP--------~~i~~L~~L~~L~  155 (286)
                        +.+....        ..+..+++|+.||
T Consensus       125 --Npl~~~~~~~~~y~~~i~~~~P~L~~LD  152 (162)
T d1koha1         125 --NSLSDTFRDQSTYISAIRERFPKLLRLD  152 (162)
T ss_dssp             --STTSSSSSSHHHHHHHHHTTSTTCCEET
T ss_pred             --CCcCcCcccchhHHHHHHHHCCCCCEEC
Confidence              3333221        2356788899885

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=96.20  E-value=0.0012  Score=49.90  Aligned_cols=62  Identities=13%  Similarity=0.083  Sum_probs=30.9

Q ss_pred             hcCCCCCcEEEeecccCCccCc-----ccCccccCCCCCcEEecccccccCCCCCCCCCc-----ccccccccccCCCEE
Q 039475           85 FDQLTCLRALKIEELWYGDQTI-----EIPKGLENLIHLRYLKLSAVEELSETCYCPSLK-----RLPQGRGKLINLRHL  154 (286)
Q Consensus        85 ~~~l~~Lr~L~L~~~~~~~~i~-----~lP~~i~~L~~Lr~L~L~~~~~LP~~~~~~~l~-----~LP~~i~~L~~L~~L  154 (286)
                      +...+.|++|+|++    +.+.     .+...+...+.|+.|+|++          +.+.     .|-..+.+-++|++|
T Consensus        40 L~~n~~L~~L~Ls~----n~l~~~~~~~la~~L~~n~~L~~L~L~~----------n~i~~~g~~~l~~aL~~n~sL~~L  105 (167)
T d1pgva_          40 ACNSKHIEKFSLAN----TAISDSEARGLIELIETSPSLRVLNVES----------NFLTPELLARLLRSTLVTQSIVEF  105 (167)
T ss_dssp             HTTCSCCCEEECTT----SCCBHHHHTTHHHHHHHCSSCCEEECCS----------SBCCHHHHHHHHHHTTTTCCCSEE
T ss_pred             HhhCCccceeeccc----cccchhHHHHHhhhhhhcccccceeeeh----------hhcchHHHHHHHHHHHhCCcCCEE
Confidence            44555566666666    4443     2233444455566666653          2222     223334445556666


Q ss_pred             EecCCC
Q 039475          155 IFDKDY  160 (286)
Q Consensus       155 ~l~~~~  160 (286)
                      ++.++.
T Consensus       106 ~l~~n~  111 (167)
T d1pgva_         106 KADNQR  111 (167)
T ss_dssp             ECCCCS
T ss_pred             ECCCCc
Confidence            665543

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=94.52  E-value=0.0061  Score=45.85  Aligned_cols=61  Identities=11%  Similarity=0.104  Sum_probs=33.1

Q ss_pred             CCCCCcEEecccccccCCCCCCCCCc-----ccccccccccCCCEEEecCCCccc-----cccccccccccccccccccc
Q 039475          114 NLIHLRYLKLSAVEELSETCYCPSLK-----RLPQGRGKLINLRHLIFDKDYLAY-----MANGFERLTSLRTLSGFTVA  183 (286)
Q Consensus       114 ~L~~Lr~L~L~~~~~LP~~~~~~~l~-----~LP~~i~~L~~L~~L~l~~~~~~~-----lP~~i~~L~~L~~L~~~~~~  183 (286)
                      +.++|+.|+|++         +..+.     .+-..+.+.++|++|++++|.+..     +...+...+.|++|++..+.
T Consensus        13 n~~~L~~L~L~~---------~~~i~~~~~~~l~~~L~~n~~L~~L~Ls~n~l~~~~~~~la~~L~~n~~L~~L~L~~n~   83 (167)
T d1pgva_          13 DDTDLKEVNINN---------MKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNF   83 (167)
T ss_dssp             TCSSCCEEECTT---------CCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSB
T ss_pred             CCCCCcEEEeCC---------CCCCCHHHHHHHHHHHhhCCccceeeccccccchhHHHHHhhhhhhcccccceeeehhh
Confidence            456788888864         22232     233345566677888887776541     11223344556666555443

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=94.27  E-value=0.013  Score=43.73  Aligned_cols=107  Identities=16%  Similarity=0.100  Sum_probs=51.2

Q ss_pred             cCCCCcEEEeccCC-CCCCCcCccchhhhcCCCCCcEEEeecccCCccCc-----ccCccccCCCCCcEEecccccccCC
Q 039475           58 DAKKLRSLSLFYDS-KGQSAASPVLQGLFDQLTCLRALKIEELWYGDQTI-----EIPKGLENLIHLRYLKLSAVEELSE  131 (286)
Q Consensus        58 ~l~~Lr~L~l~~~~-~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~i~-----~lP~~i~~L~~Lr~L~L~~~~~LP~  131 (286)
                      +.+.|+.|.+.+.. ..... ...+-..+...++|+.|++++    +.+.     .+-..+.....++.+++++      
T Consensus        15 ~~~~L~~L~L~~~~~i~~~~-~~~l~~al~~n~~L~~L~Ls~----n~l~~~~~~~L~~~l~~~~~l~~l~l~~------   83 (166)
T d1io0a_          15 NDPDLEEVNLNNIMNIPVPT-LKACAEALKTNTYVKKFSIVG----TRSNDPVAFALAEMLKVNNTLKSLNVES------   83 (166)
T ss_dssp             TCTTCCEEECTTCTTCCHHH-HHHHHHHHTTCCSCCEEECTT----SCCCHHHHHHHHHHHHHCSSCCEEECCS------
T ss_pred             cCCCCcEEEcCCCCCCCHHH-HHHHHHHHhcCCccCeeeccC----CcccHHHHHHHHHHHhhcccchhhhhcc------
Confidence            45666666666532 21110 000223345666677777777    5543     2333445556666666653      


Q ss_pred             CCCCCCC-----cccccccccccCCCEEEec--CCCcc-----ccccccccccccccccc
Q 039475          132 TCYCPSL-----KRLPQGRGKLINLRHLIFD--KDYLA-----YMANGFERLTSLRTLSG  179 (286)
Q Consensus       132 ~~~~~~l-----~~LP~~i~~L~~L~~L~l~--~~~~~-----~lP~~i~~L~~L~~L~~  179 (286)
                          ..+     ..+-..+...++|+.+++.  ++.+.     .+...+.+.++|++|++
T Consensus        84 ----~~~~~~g~~~l~~~l~~~~~L~~l~L~l~~n~i~~~~~~~La~~L~~n~~L~~L~l  139 (166)
T d1io0a_          84 ----NFISGSGILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGY  139 (166)
T ss_dssp             ----SCCCHHHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEEC
T ss_pred             ----ccccchhHHHHHHHHHhCccccEEeeccCCCcCcHHHHHHHHHHHHhCCCcCEEeC
Confidence                212     2334455556666665553  23332     12233445555555544

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=93.35  E-value=0.012  Score=44.02  Aligned_cols=118  Identities=17%  Similarity=0.132  Sum_probs=66.8

Q ss_pred             cCCCCCcEEecccccccCCCCCCCCCc-----ccccccccccCCCEEEecCCCccc-----ccccccccccccccccccc
Q 039475          113 ENLIHLRYLKLSAVEELSETCYCPSLK-----RLPQGRGKLINLRHLIFDKDYLAY-----MANGFERLTSLRTLSGFTV  182 (286)
Q Consensus       113 ~~L~~Lr~L~L~~~~~LP~~~~~~~l~-----~LP~~i~~L~~L~~L~l~~~~~~~-----lP~~i~~L~~L~~L~~~~~  182 (286)
                      .+.+.|++|++++         ++.+.     .+-..+.+.++|++|++++|.+..     +-..+...++++.+.+..+
T Consensus        14 ~~~~~L~~L~L~~---------~~~i~~~~~~~l~~al~~n~~L~~L~Ls~n~l~~~~~~~L~~~l~~~~~l~~l~l~~~   84 (166)
T d1io0a_          14 NNDPDLEEVNLNN---------IMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESN   84 (166)
T ss_dssp             TTCTTCCEEECTT---------CTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSS
T ss_pred             hcCCCCcEEEcCC---------CCCCCHHHHHHHHHHHhcCCccCeeeccCCcccHHHHHHHHHHHhhcccchhhhhccc
Confidence            5678899999974         23332     344456678899999999987652     2223556677777776655


Q ss_pred             cccCCccCCCCCCcccccCcccccceeEEcccC-Cccc--chhhhhhcCCCCCCceEEEEeCCC
Q 039475          183 ARVGGKYSSEACNLEGLRNLNHLRQFLRICGLG-NLQM--RLKINAHLEKKKNLVHLTLDFDKG  243 (286)
Q Consensus       183 ~~~~~~~~~~~~~~~~l~~L~~L~~~L~i~~l~-~~~~--~~~~~~~l~~l~~L~~L~L~~~~~  243 (286)
                      ......   .......+...+.|+ .+.+.... .+..  ..++...+.+.+.|++|+++++..
T Consensus        85 ~~~~~g---~~~l~~~l~~~~~L~-~l~L~l~~n~i~~~~~~~La~~L~~n~~L~~L~l~~~~~  144 (166)
T d1io0a_          85 FISGSG---ILALVEALQSNTSLI-ELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQ  144 (166)
T ss_dssp             CCCHHH---HHHHHHGGGGCSSCC-EEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSH
T ss_pred             cccchh---HHHHHHHHHhCcccc-EEeeccCCCcCcHHHHHHHHHHHHhCCCcCEEeCcCCCC
Confidence            432100   001122344444454 44443221 1112  345556667777888888876644