Citrus Sinensis ID: 039512

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150----
Protein Sequence
MGKERQYWLLKTEPGEWSWEDQAANGGVTKWDGVKNKQAQKNMKAMRLNELCFFYHSGARSRRVVGVVSVLREWYEESGDGAGAGAVDVKEVGMMRRAVDLKEMKRDQELKGWALFRQPRLSVVNVEKKVWDRVCDLGGGFDGDGEKKDDEGDE
Secondary Structure (PSIPRED)
cccccEEEEEccccccccHHHHHHccccEEEcccccHHHHHHHHHcccccEEEEEEEccccccEEEEEEEEEcccccccccccEEEEEEEEEEEEcccccHHHHHcccccccccEEEccccEEEEccHHHHHHHHHHccccccccccccccccc
Secondary Structure Prediction (SSPRO)
ccHHHHHHHHccccccccHHHHHHcccccccccHHHHHHHHHHHHHccccEEEEEEcccccccEEEEEEEEcccccccccccccEEEEEEEEccccccccHHHHHHcHHHHcccEEcccccEEccccHHHHHHHHHHccccccccccccccccc
Coil and Loop (DISEMBL)
MGKERQYWLlktepgewswedqaanggvtkwdgvKNKQAQKNMKAMRLNELCFFYHSGARSRRVVGVVSVLREWYeesgdgagagavdvkEVGMMRRAVDLKEMKRDQELKgwalfrqprlsvvnVEKKVWDRVCdlgggfdgdgekkddegde
Flexible Loop (DISEMBL)
MGKERQYWLLktepgewswedqAANGGVTKWDGVKNKQAQKNMKAMRLNELCFfyhsgarsrrVVGVVSVLREWyeesgdgagagavdvkeVGMMRRAVDlkemkrdqelkgwalfrqprlsvvnvekkvwdrvcdlgggfdgdgekkddegde
Low Complexity Region (SEG)
MGKERQYWLLKTEPGEWSWEDQAANGGVTKWDGVKNKQAQKNMKAMRLNELCFFYHsgarsrrvvgvvsvLREWYeesgdgagagavdvkevgMMRRAVDLKEMKRDQELKGWALFRQPRLSVVNVEKKVWDRVCdlgggfdgdgekkddegde
Disordered region (IsUnstruct)
******YWLLKTEPGEWSWEDQAANGGVTKWDGVKN*****NMKAMRLNELCFFYHSGARSRRVVGVVSVLREWYEESGDGAGAGAVDVKEVGMMRRAVDLKEMKRDQELKGWALFRQPRLSVVNVEKKVWDRVCDLGGGF*************
Disordered Region (DISOPRED)
**KERQYWLLKTEPGEWSWEDQAANGGVTKWDGVKNKQAQKNMKAMRLNELCFFYHSGARSRRVVGVVSVLREWYEESGDGAGAGAVDVKEVGMMRRAVDLKEMKRDQELKGWALFRQPRLSVVNVEKKVWDRVCDLG****************
Disordered Region (DISEMBL)
MGKERQYWLLKTEPGEWSWEDQAANGGVTKWDGVKNKQAQKNMKAMRLNELCFFYHSGARSRRVVGVVSVLREWYEESGDGAGAGAVDVKEVGMMRRAVDLKEMKRDQELKGWALFRQPRLSVVNVEKKVWDRVCDLGGGFDGD**********
Disordered Region (DISPRO)
*G***QYWLLKTEPGEWSWEDQAANGGVTKWDGVKNKQAQKNMKAMRLNELCFFYHSGARSRRVVGVVSVLREWYEESGDGAGAGAVDVKEVGMMRRAVDLKEMKRDQELKGWALFRQPRLSVVNVEKKVWDRVCDLGG***************
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MGKERQYWLLKTEPGEWSWEDQAANGGVTKWDGVKNKQAQKNMKAMRLNELCFFYHSGARSRRVVGVVSVLREWYEESGDGAGAGAVDVKEVGMMRRAVDLKEMKRDQELKGWALFRQPRLSVVNVEKKVWDRVCDLGGGFDGDGEKKDDEGDE
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	154	2.2.26 [Sep-21-2011]
Q91YJ3	226	Thymocyte nuclear protein	yes	no	0.850	0.579	0.317	1e-14
Q6P3E0	226	Thymocyte nuclear protein	yes	no	0.850	0.579	0.317	1e-14
Q9P016	225	Thymocyte nuclear protein	yes	no	0.850	0.582	0.304	8e-14
Q90679	242	Thymocyte nuclear protein	yes	no	0.850	0.541	0.298	2e-13
Q6PFL8	231	Thymocyte nuclear protein	yes	no	0.844	0.562	0.282	3e-09
O94645	239	Uncharacterized protein C	yes	no	0.883	0.569	0.220	0.0005

>sp|Q91YJ3|THYN1_MOUSE Thymocyte nuclear protein 1 OS=Mus musculus GN=Thyn1 PE=1 SV=1

 Score = 79.0 bits (193), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 52/164 (31%), Positives = 83/164 (50%), Gaps = 33/164 (20%)

Query: 7   YWLLKTEPG---------EWSWEDQAANGGVTK-WDGVKNKQAQKNMKAMRLNELCFFYH 56
           YWL+K+EP          ++S ED  A    T  WDGV+N QA+  ++AM+L +  FFYH
Sbjct: 57  YWLMKSEPESRLEKGIDMKFSIEDLKAQPKQTACWDGVRNYQARNFLRAMKLEDEAFFYH 116

Query: 57  SGARSRRVVGVVSVLREWY------EESGDGAGAGA---------VDVKEVGMMRRAVDL 101
           S  +   +VG++ +++E Y      E+S       +         VDV+ V MM+R + L
Sbjct: 117 SNCKQPGIVGLMKIVKEAYPDHTQFEKSNPHYDPSSKEDDPKWSMVDVQFVRMMKRFIPL 176

Query: 102 KEMKRDQE--------LKGWALFRQPRLSVVNVEKKVWDRVCDL 137
           +E+K   +        LK   LF + RLSV  + ++ +D +  L
Sbjct: 177 EELKTYHQAHKATGGPLKSMTLFTRQRLSVQPLTQEEFDFILSL 220

Mus musculus (taxid: 10090)

>sp|Q6P3E0|THYN1_RAT Thymocyte nuclear protein 1 OS=Rattus norvegicus GN=Thyn1 PE=2 SV=1

 Score = 78.6 bits (192), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 52/164 (31%), Positives = 80/164 (48%), Gaps = 33/164 (20%)

Query: 7   YWLLKTEPG---------EWSWED-QAANGGVTKWDGVKNKQAQKNMKAMRLNELCFFYH 56
           YWL+K+EP          ++S ED QA     T WDGV+N QA   ++AM+L +  FFYH
Sbjct: 57  YWLMKSEPESRLEKGIDMKFSIEDLQAQPKQTTCWDGVRNYQAWNFLRAMKLEDEAFFYH 116

Query: 57  SGARSRRVVGVVSVLREWYEESG---------------DGAGAGAVDVKEVGMMRRAVDL 101
           S  +   +VG++ +++E Y +                 D      VDV+ V MM+R + L
Sbjct: 117 SNCKQPGIVGLMKIVKEAYPDHTQFEKNDPHYDPSSKEDNPKWSMVDVQFVRMMKRFISL 176

Query: 102 KEMKRDQE--------LKGWALFRQPRLSVVNVEKKVWDRVCDL 137
            E+K   +        LK   LF + RLSV  + ++ +D +  L
Sbjct: 177 DELKTYHQAHKATGGPLKSMTLFTRQRLSVQPLTQEEFDFILSL 220

Rattus norvegicus (taxid: 10116)

>sp|Q9P016|THYN1_HUMAN Thymocyte nuclear protein 1 OS=Homo sapiens GN=THYN1 PE=1 SV=1

 Score = 76.3 bits (186), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 50/164 (30%), Positives = 80/164 (48%), Gaps = 33/164 (20%)

Query: 7   YWLLKTEPG---------EWSWED-QAANGGVTKWDGVKNKQAQKNMKAMRLNELCFFYH 56
           +WL+K+EP          ++S ED +A     T WDGV+N QA+  ++AM+L E  FFYH
Sbjct: 56  HWLMKSEPESRLEKGVDVKFSIEDLKAQPKQTTCWDGVRNYQARNFLRAMKLGEEAFFYH 115

Query: 57  SGARSRRVVGVVSVLREWYEESG---------------DGAGAGAVDVKEVGMMRRAVDL 101
           S  +   + G++ +++E Y +                 D      VDV+ V MM+R + L
Sbjct: 116 SNCKEPGIAGLMKIVKEAYPDHTQFEKNNPHYDPSSKEDNPKWSMVDVQFVRMMKRFIPL 175

Query: 102 KEMKRDQE--------LKGWALFRQPRLSVVNVEKKVWDRVCDL 137
            E+K   +        LK   LF + RLS+  + ++ +D V  L
Sbjct: 176 AELKSYHQAHKATGGPLKNMVLFTRQRLSIQPLTQEEFDFVLSL 219

Homo sapiens (taxid: 9606)

>sp|Q90679|THYN1_CHICK Thymocyte nuclear protein 1 OS=Gallus gallus GN=THYN1 PE=1 SV=1

 Score = 74.7 bits (182), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 49/164 (29%), Positives = 79/164 (48%), Gaps = 33/164 (20%)

Query: 7   YWLLKTEPG---------EWSWED-QAANGGVTKWDGVKNKQAQKNMKAMRLNELCFFYH 56
           +WLLK+EP          ++S ED +A     T W+GV+N QA+  ++AM+L +  FFYH
Sbjct: 73  HWLLKSEPESRLEKGVDVKFSIEDLKAQPNQTTFWEGVRNYQARNFLRAMKLGQQAFFYH 132

Query: 57  SGARSRRVVGVVSVLREWYEESG---------------DGAGAGAVDVKEVGMMRRAVDL 101
           S  +   +VG+V +++E Y +                 +      VDV+ V M +R + L
Sbjct: 133 SNCKEPGIVGIVKIVKEAYPDHTQFDQKDPHYDSSSRKENPKWSMVDVQFVRMTKRFIPL 192

Query: 102 KEMKRDQ--------ELKGWALFRQPRLSVVNVEKKVWDRVCDL 137
            E+K            LK   LF + RLS+  + ++ +D V  L
Sbjct: 193 SEIKTHHLAHKADGGPLKNMMLFSRQRLSIQPLTQEEFDFVLSL 236

Gallus gallus (taxid: 9031)

>sp|Q6PFL8|THYN1_DANRE Thymocyte nuclear protein 1 OS=Danio rerio GN=thyn1 PE=2 SV=1

 Score = 60.8 bits (146), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 46/163 (28%), Positives = 74/163 (45%), Gaps = 33/163 (20%)

Query: 8   WLLKTEPG---------EWSWEDQAANGGVT-KWDGVKNKQAQKNMKAMRLNELCFFYHS 57
           WL+K+EP          ++  ED  A    T  WDGV+N QA+  M+ M++ +  FFYHS
Sbjct: 63  WLMKSEPESRIENGVDVKFGIEDLKALPNQTGCWDGVRNYQARNFMREMKVGQQAFFYHS 122

Query: 58  GARSRRVVGVVSVLREWY---------------EESGDGAGAGAVDVKEVGMMRRAVDLK 102
             +   + G++ +++E Y                   D      VDV+   M++R + L 
Sbjct: 123 NCKEPGIAGLMKIVKEAYVDHTQFDKKDVHYDPSSKADNPKWHMVDVQFERMVKRFIPLA 182

Query: 103 EMKRDQ--------ELKGWALFRQPRLSVVNVEKKVWDRVCDL 137
           E+K+           LK  ALF + RLSV  +  + ++ V  L
Sbjct: 183 ELKKYHLEHRVKGGPLKDMALFTRARLSVQPLTAEEFEFVLSL 225

Danio rerio (taxid: 7955)

>sp|O94645|YBV3_SCHPO Uncharacterized protein C21.03c OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPBC21.03c PE=4 SV=3

 Score = 43.5 bits (101), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 37/168 (22%), Positives = 74/168 (44%), Gaps = 32/168 (19%)

Query: 2   GKERQYWLLKTEPGEWSW-------------EDQAANGGVTKWDGVKNKQAQKNMK-AMR 47
            ++R+YWL+K E GE  +             E+   +G +  W GV+N +A+  ++  ++
Sbjct: 5   AEKRRYWLMKAE-GEPRYVKGINVAFTFEMLEEITEDGKMESWSGVRNYEARNMIRDEIK 63

Query: 48  LNELCFFYHSGARSRRVVGVVSVLR-------------EWYEESGDGAGAG--AVDVKEV 92
           + +  F Y S  +   + GV+ +                +Y+           +V V+  
Sbjct: 64  IGDYAFLYCSNCKFPHIKGVMRICSNSHPDDSAWNSNDPYYDPKSTPQNPRWYSVGVQSE 123

Query: 93  GMMRRAVDLKEMK--RDQELKGWALFRQPRLSVVNVEKKVWDRVCDLG 138
             + R V L+E+K  ++ +LK   L  + RLS+  V+ + W  + +L 
Sbjct: 124 YKLDRPVTLRELKMHKENQLKSMELLNRSRLSISRVKPEEWKFIHELS 171

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	154
18397592	158	uncharacterized protein [Arabidopsis tha	0.980	0.955	0.651	6e-51
297831924	155	hypothetical protein ARALYDRAFT_319455 [	0.967	0.961	0.660	9e-51
357480713	146	Thymocyte nuclear protein [Medicago trun	0.935	0.986	0.653	1e-49
21592505	158	unknown [Arabidopsis thaliana]	0.980	0.955	0.632	2e-49
356497492	136	PREDICTED: thymocyte nuclear protein 1-l	0.863	0.977	0.666	6e-48
255562220	150	conserved hypothetical protein [Ricinus	0.974	1.0	0.686	2e-46
224105753	151	predicted protein [Populus trichocarpa]	0.863	0.880	0.722	2e-45
297601459	175	Os03g0676100 [Oryza sativa Japonica Grou	0.941	0.828	0.566	4e-40
147845298	1471	hypothetical protein VITISV_034945 [Viti	0.883	0.092	0.744	1e-39
307135954	201	hypothetical protein [Cucumis melo subsp	0.915	0.701	0.662	2e-39

>gi|18397592|ref|NP_565364.1| uncharacterized protein [Arabidopsis thaliana] gi|3810594|gb|AAC69376.1| expressed protein [Arabidopsis thaliana] gi|149944293|gb|ABR46189.1| At2g14660 [Arabidopsis thaliana] gi|330251223|gb|AEC06317.1| uncharacterized protein [Arabidopsis thaliana]

 Score =  205 bits (521), Expect = 6e-51,   Method: Compositional matrix adjust.
 Identities = 103/158 (65%), Positives = 123/158 (77%), Gaps = 7/158 (4%)

Query: 1   MGKERQYWLLKTEPGEWSWEDQAANGGVTKWDGVKNKQAQKNMKAMRLNELCFFYHSGAR 60
           MGK ++YWLLKTEP EWSW DQ +NGG++KWDGVKNKQAQKN+K+M L +LCFFYHSG +
Sbjct: 1   MGKTKRYWLLKTEPNEWSWSDQESNGGISKWDGVKNKQAQKNLKSMTLGDLCFFYHSGTK 60

Query: 61  SRRVVGVVSVLREWYEESGDGA-GAGAVDVKEVGMMRRAVDLKEMKRDQEL--KGWALFR 117
           SR VVGVV V REWY +  +G  G GAVDVK +G MR+ VDLKEMK D+ +  KG+ LFR
Sbjct: 61  SRCVVGVVEVSREWYTDDAEGVEGEGAVDVKAIGEMRKCVDLKEMKGDKGIITKGFVLFR 120

Query: 118 QPRLSVVNVEKKVWDRVCDLGGGFDGDG----EKKDDE 151
           QPRLSVV VE+ VW+ +C+LG GF GDG    E  DDE
Sbjct: 121 QPRLSVVPVEEDVWNMICELGNGFCGDGKEDCESSDDE 158

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297831924|ref|XP_002883844.1| hypothetical protein ARALYDRAFT_319455 [Arabidopsis lyrata subsp. lyrata] gi|297329684|gb|EFH60103.1| hypothetical protein ARALYDRAFT_319455 [Arabidopsis lyrata subsp. lyrata]

 Score =  204 bits (519), Expect = 9e-51,   Method: Compositional matrix adjust.
 Identities = 103/156 (66%), Positives = 121/156 (77%), Gaps = 7/156 (4%)

Query: 1   MGKERQYWLLKTEPGEWSWEDQAANGGVTKWDGVKNKQAQKNMKAMRLNELCFFYHSGAR 60
           MGK +QYWLLKTEP EWSW DQ ANGG++KWDGVKNKQAQKN+K+M L +LCFFYHSG +
Sbjct: 1   MGKTKQYWLLKTEPSEWSWSDQEANGGISKWDGVKNKQAQKNLKSMTLGDLCFFYHSGTK 60

Query: 61  SRRVVGVVSVLREWYEESGDGAGAGAVDVKEVGMMRRAVDLKEMKRDQ-ELKGWALFRQP 119
           +R VVGVV V REWY +  D  G GAVDVK +G MR+ VDLKEMK D+  +K + LFRQP
Sbjct: 61  ARCVVGVVEVSREWYTD--DDEGEGAVDVKAIGEMRKCVDLKEMKGDKGIIKSFVLFRQP 118

Query: 120 RLSVVNVEKKVWDRVCDLGGGFDGDG----EKKDDE 151
           RLSVV VE+ VW ++C+LG GF GDG    E  DDE
Sbjct: 119 RLSVVPVEEDVWKKICELGNGFCGDGKEDCESSDDE 154

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357480713|ref|XP_003610642.1| Thymocyte nuclear protein [Medicago truncatula] gi|355511977|gb|AES93600.1| Thymocyte nuclear protein [Medicago truncatula]

 Score =  201 bits (510), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 98/150 (65%), Positives = 118/150 (78%), Gaps = 6/150 (4%)

Query: 1   MGKERQYWLLKTEPGEWSWEDQAANGGVTKWDGVKNKQAQKNMKAMRLNELCFFYHSGAR 60
           MGKE + +LLKTEP EWSWEDQ ANGG++KWDGVKNKQAQK +K+M LN+LCFFYHSG +
Sbjct: 1   MGKEVKRFLLKTEPSEWSWEDQEANGGISKWDGVKNKQAQKYLKSMSLNDLCFFYHSGPK 60

Query: 61  SRRVVGVVSVLREWYEESGDGAGAGAVDVKEVGMMRRAVDLKEMKRDQELKGWALFRQPR 120
           SRR+VGVVSV++EWY ++ D    GAVDVK VG MRR VDLKEMK    LK + L +QPR
Sbjct: 61  SRRIVGVVSVVKEWYTDNDDD---GAVDVKAVGEMRRVVDLKEMKH---LKDFVLLKQPR 114

Query: 121 LSVVNVEKKVWDRVCDLGGGFDGDGEKKDD 150
           LSVV V   +WD +CDLGGG+ GDG  + +
Sbjct: 115 LSVVPVPHVIWDTICDLGGGYHGDGNHESN 144

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|21592505|gb|AAM64455.1| unknown [Arabidopsis thaliana]

 Score =  199 bits (507), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 100/158 (63%), Positives = 122/158 (77%), Gaps = 7/158 (4%)

Query: 1   MGKERQYWLLKTEPGEWSWEDQAANGGVTKWDGVKNKQAQKNMKAMRLNELCFFYHSGAR 60
           MGK ++YWLLKTEP EWS  DQ +NGG++KWDGVKNKQAQKN+K+M L +LCFFYHSG +
Sbjct: 1   MGKSKRYWLLKTEPSEWSLSDQESNGGISKWDGVKNKQAQKNLKSMTLGDLCFFYHSGTK 60

Query: 61  SRRVVGVVSVLREWYEESGDGA-GAGAVDVKEVGMMRRAVDLKEMKRDQEL--KGWALFR 117
           +R VVG+V V REWY    +G  G GAVDVK +G MR+ VDLKEMK D+ +  KG+ LFR
Sbjct: 61  ARSVVGLVEVSREWYTGDDEGVEGEGAVDVKAIGEMRKCVDLKEMKGDKGISTKGFVLFR 120

Query: 118 QPRLSVVNVEKKVWDRVCDLGGGFDGDG----EKKDDE 151
           QPRLSVV VE+ VW+++C+LG GF GDG    E  DDE
Sbjct: 121 QPRLSVVPVEEDVWNKICELGNGFCGDGKEDCESSDDE 158

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356497492|ref|XP_003517594.1| PREDICTED: thymocyte nuclear protein 1-like [Glycine max]

 Score =  195 bits (495), Expect = 6e-48,   Method: Compositional matrix adjust.
 Identities = 96/144 (66%), Positives = 115/144 (79%), Gaps = 11/144 (7%)

Query: 1   MGKERQYWLLKTEPGEWSWEDQAANGGVTKWDGVKNKQAQKNMKAMRLNELCFFYHSGAR 60
           MGKE++ +LLKTEP EWSWEDQAANGG++KWDGVKNKQAQK +K+M +N+LCFFYHSG +
Sbjct: 1   MGKEKKRYLLKTEPSEWSWEDQAANGGISKWDGVKNKQAQKYLKSMSINDLCFFYHSGPK 60

Query: 61  SRRVVGVVSVLREWYEESGDGAGAGAVDVKEVGMMRRAVDLKEMKRDQELKGWALFRQPR 120
           +RR+VGVVSV+REWY   GD     AVDVK VG MRR VDLKEMK     K +AL RQPR
Sbjct: 61  ARRIVGVVSVVREWY---GD-----AVDVKAVGEMRRPVDLKEMK---HFKDFALLRQPR 109

Query: 121 LSVVNVEKKVWDRVCDLGGGFDGD 144
           LSVV V   +W+++C LGGG+ GD
Sbjct: 110 LSVVPVPDHIWNQICHLGGGYQGD 133

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255562220|ref|XP_002522118.1| conserved hypothetical protein [Ricinus communis] gi|223538717|gb|EEF40318.1| conserved hypothetical protein [Ricinus communis]

 Score =  189 bits (481), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 105/153 (68%), Positives = 124/153 (81%), Gaps = 3/153 (1%)

Query: 1   MGKERQYWLLKTEPGEWSWEDQAANGGVTKWDGVKNKQAQKNMKAMRLNELCFFYHSGAR 60
           MGKE+QYWLLKTEPGEWSW+DQA+NGG+T WDGVKNKQAQKN+KAM + +LCFFYHSGA+
Sbjct: 1   MGKEKQYWLLKTEPGEWSWDDQASNGGITNWDGVKNKQAQKNLKAMNIKDLCFFYHSGAK 60

Query: 61  SRRVVGVVSVLREWYEESGDGAGAGAVDVKEVGMMRRAVDLKEMKRDQELKGWALFRQPR 120
           +RRVVGVV+V++EWY    +      VDVK VG MRR VDLKEMK D  L  +ALFRQPR
Sbjct: 61  ARRVVGVVAVVKEWY---SNDDDEVVVDVKAVGEMRRPVDLKEMKNDDGLSDFALFRQPR 117

Query: 121 LSVVNVEKKVWDRVCDLGGGFDGDGEKKDDEGD 153
           LSVV V K+VW+RVC+LG GF+GDG   + E D
Sbjct: 118 LSVVPVPKEVWERVCELGDGFEGDGNDDNQEQD 150

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224105753|ref|XP_002313921.1| predicted protein [Populus trichocarpa] gi|222850329|gb|EEE87876.1| predicted protein [Populus trichocarpa]

 Score =  187 bits (474), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 99/137 (72%), Positives = 121/137 (88%), Gaps = 4/137 (2%)

Query: 1   MGKERQYWLLKTEPGEWSWEDQAANGGVTKWDGVKNKQAQKNMKAMRLNELCFFYHSGAR 60
           MGKE++YWLLKTEPGEWSW+DQA+NGG++ WDGVKNKQAQKN+KAM+LN+LCFFYHSG+ 
Sbjct: 1   MGKEKRYWLLKTEPGEWSWDDQASNGGISNWDGVKNKQAQKNLKAMKLNDLCFFYHSGSN 60

Query: 61  SRRVVGVVSVLREWYEESGDGAGAGAVDVKEVGMMRRAVDLKEMKRDQELKGWALFRQPR 120
           +RRVVGVV+V+REWY+E G+    G VDVK VG MRR +DLKE+K D+ LKG+ LFRQPR
Sbjct: 61  ARRVVGVVTVVREWYDEGGE----GVVDVKAVGEMRRPLDLKELKGDEGLKGFQLFRQPR 116

Query: 121 LSVVNVEKKVWDRVCDL 137
           LSVV V K+VW+RVC+L
Sbjct: 117 LSVVPVSKEVWERVCEL 133

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297601459|ref|NP_001050888.2| Os03g0676100 [Oryza sativa Japonica Group] gi|108710370|gb|ABF98165.1| expressed protein [Oryza sativa Japonica Group] gi|125545232|gb|EAY91371.1| hypothetical protein OsI_12991 [Oryza sativa Indica Group] gi|255674778|dbj|BAF12802.2| Os03g0676100 [Oryza sativa Japonica Group]

 Score =  169 bits (428), Expect = 4e-40,   Method: Compositional matrix adjust.
 Identities = 89/157 (56%), Positives = 109/157 (69%), Gaps = 12/157 (7%)

Query: 6   QYWLLKTEPGEWSWEDQA--ANGGVTKWDGVKNKQAQKNMKAMRLNELCFFYHSGA--RS 61
           +YWLLKTEPGEWSW DQA    GGV  WDGV+N+QA   ++AMR+ + C FYHSGA   S
Sbjct: 18  KYWLLKTEPGEWSWSDQARAPGGGVAPWDGVRNRQAVNGLRAMRVGDRCLFYHSGAGAAS 77

Query: 62  RRVVGVVSVLREWYEESGDGAGAGAVDVKEVGMMRRAVDLKEMKR--------DQELKGW 113
           RRVVGVV V REWYE  G+ A  GAVDV+ VG  RR V L E+K+         + ++ +
Sbjct: 78  RRVVGVVEVAREWYEGEGEAASGGAVDVRAVGEFRRPVALGEIKKAAGGGGGEVEGMREF 137

Query: 114 ALFRQPRLSVVNVEKKVWDRVCDLGGGFDGDGEKKDD 150
           AL RQPRLSV+ V  KVWD +C++GGGF  DGE +DD
Sbjct: 138 ALLRQPRLSVMPVPAKVWDWICEMGGGFVQDGEDEDD 174

Source: Oryza sativa Japonica Group

Species: Oryza sativa

Genus: Oryza

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147845298|emb|CAN83372.1| hypothetical protein VITISV_034945 [Vitis vinifera]

 Score =  167 bits (423), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 102/137 (74%), Positives = 118/137 (86%), Gaps = 1/137 (0%)

Query: 1   MGKERQYWLLKTEPGEWSWEDQAANGGVTKWDGVKNKQAQKNMKAMRLNELCFFYHSGAR 60
           MGKE+ YWLLKTEPGEWSWEDQAAN G++ WDGVKNKQAQKN+KAM L +LCFFYHSGA+
Sbjct: 1   MGKEKHYWLLKTEPGEWSWEDQAANEGLSNWDGVKNKQAQKNLKAMHLGDLCFFYHSGAK 60

Query: 61  SRRVVGVVSVLREWYEESGDGAGAGAVDVKEVGMMRRAVDLKEMKRDQELKGWALFRQPR 120
           +RRVVGVVSV+REWYEE  DG   GAVDV+ VG MRRAVDL EMK++  LKG+ LFRQPR
Sbjct: 61  ARRVVGVVSVVREWYEEG-DGGAGGAVDVRCVGEMRRAVDLGEMKKESGLKGFGLFRQPR 119

Query: 121 LSVVNVEKKVWDRVCDL 137
           LSVV V ++VW RVC++
Sbjct: 120 LSVVPVPEEVWKRVCEM 136

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|307135954|gb|ADN33814.1| hypothetical protein [Cucumis melo subsp. melo]

 Score =  166 bits (421), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 96/145 (66%), Positives = 116/145 (80%), Gaps = 4/145 (2%)

Query: 2   GKERQYWLLKTEPGEWSWEDQAANGGVTKWDGVKNKQAQKNMKAMRLNELCFFYHSGARS 61
           G +RQYWLLKTEP EWSW DQAAN G +KWDGVKNKQAQK++K+M+L + CFFYHSGA++
Sbjct: 52  GDKRQYWLLKTEPAEWSWADQAANDGRSKWDGVKNKQAQKHLKSMKLGDRCFFYHSGAKA 111

Query: 62  RRVVGVVSVLREWYEESGDGAGAGAVDVKEVGMMRRAVDLKEMKRDQE-LKGWALFRQPR 120
           RRVVGVV+V REWY           VDV+ VG MR  VDLKEMK+  E +K +ALFRQPR
Sbjct: 112 RRVVGVVAVAREWYSSV---EDEVVVDVEAVGEMREPVDLKEMKKGMEGMKNFALFRQPR 168

Query: 121 LSVVNVEKKVWDRVCDLGGGFDGDG 145
           LSVV V K++WD++C+LGGGF+GDG
Sbjct: 169 LSVVPVAKEIWDKICELGGGFEGDG 193

Source: Cucumis melo subsp. melo

Species: Cucumis melo

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	154
TAIR|locus:2064260	158	AT2G14660 "AT2G14660" [Arabido	0.876	0.854	0.528	1.5e-35
UNIPROTKB|Q2GIJ6	135	APH_1291 "Putative uncharacter	0.831	0.948	0.356	2e-17
TIGR_CMR|APH_1291	135	APH_1291 "conserved hypothetic	0.831	0.948	0.356	2e-17
UNIPROTKB|Q5LLR4	140	SPO3857 "Uncharacterized prote	0.324	0.357	0.529	1.6e-16
TIGR_CMR|SPO_3857	140	SPO_3857 "conserved hypothetic	0.324	0.357	0.529	1.6e-16
UNIPROTKB|Q2GF45	135	ECH_1154 "Putative uncharacter	0.798	0.911	0.349	1.3e-15
TIGR_CMR|ECH_1154	135	ECH_1154 "conserved hypothetic	0.798	0.911	0.349	1.3e-15
UNIPROTKB|Q0C4X5	145	HNE_0488 "Putative uncharacter	0.331	0.351	0.480	5.7e-15
UNIPROTKB|Q60BW0	152	MCA0353 "Putative uncharacteri	0.331	0.335	0.471	1e-13
UNIPROTKB|Q83BN8	152	CBU_1465 "Uncharacterized prot	0.324	0.328	0.461	5.3e-13

TAIR|locus:2064260 AT2G14660 "AT2G14660" [Arabidopsis thaliana (taxid:3702)]

 Score = 384 (140.2 bits), Expect = 1.5e-35, P = 1.5e-35
 Identities = 73/138 (52%), Positives = 88/138 (63%)

Query:     1 MGKERQYWLLKTEPGEWSWEDQAANGGVTKWDGVKNKQAQKNMKAMRLNELCFFYHXXXX 60
             MGK ++YWLLKTEP EWSW DQ +NGG++KWDGVKNKQAQKN+K+M L +LCFFYH    
Sbjct:     1 MGKTKRYWLLKTEPNEWSWSDQESNGGISKWDGVKNKQAQKNLKSMTLGDLCFFYHSGTK 60

Query:    61 XXXXXXXXXXLREWYXXXXXXXXXXXXXXXXXX-MMRRAVDLKEMKRDQEL--KGWALFR 117
                        REWY                    MR+ VDLKEMK D+ +  KG+ LFR
Sbjct:    61 SRCVVGVVEVSREWYTDDAEGVEGEGAVDVKAIGEMRKCVDLKEMKGDKGIITKGFVLFR 120

Query:   118 QPRLSVVNVEKKVWDRVC 135
             QPRLSVV VE+ VW+ +C
Sbjct:   121 QPRLSVVPVEEDVWNMIC 138

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

UNIPROTKB|Q2GIJ6 APH_1291 "Putative uncharacterized protein" [Anaplasma phagocytophilum HZ (taxid:212042)]

 Score = 213 (80.0 bits), Expect = 2.0e-17, P = 2.0e-17
 Identities = 47/132 (35%), Positives = 68/132 (51%)

Query:     3 KERQYWLLKTEPGEWSWEDQAANGGVTKWDGVKNKQAQKNMKAMRLNELCFFYHXXXXXX 62
             +ER++WLLK+EP +++W D  A   VT WDGVKN QAQ N+KA  + +  FFYH      
Sbjct:     2 QERRFWLLKSEPADFAWGDMLAVC-VTTWDGVKNYQAQGNLKAASVGDFAFFYHAGAEKA 60

Query:    63 XXXXXXXXLREWYXXXXXXXXXXXXXXXXXXMMRRAVDLKEMKRDQELKGWALFRQPRLS 122
                      RE+Y                   ++R++ L+E+K  + L   A+ +QPRLS
Sbjct:    61 IKGIVKV-CREFYIPENDRFGCIDVEFHSA--LKRSISLQEIKSVESLSSMAILKQPRLS 117

Query:   123 VVNVEKKVWDRV 134
             V  V    WD +
Sbjct:   118 VSEVTPAEWDTI 129

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

TIGR_CMR|APH_1291 APH_1291 "conserved hypothetical protein" [Anaplasma phagocytophilum HZ (taxid:212042)]

 Score = 213 (80.0 bits), Expect = 2.0e-17, P = 2.0e-17
 Identities = 47/132 (35%), Positives = 68/132 (51%)

Query:     3 KERQYWLLKTEPGEWSWEDQAANGGVTKWDGVKNKQAQKNMKAMRLNELCFFYHXXXXXX 62
             +ER++WLLK+EP +++W D  A   VT WDGVKN QAQ N+KA  + +  FFYH      
Sbjct:     2 QERRFWLLKSEPADFAWGDMLAVC-VTTWDGVKNYQAQGNLKAASVGDFAFFYHAGAEKA 60

Query:    63 XXXXXXXXLREWYXXXXXXXXXXXXXXXXXXMMRRAVDLKEMKRDQELKGWALFRQPRLS 122
                      RE+Y                   ++R++ L+E+K  + L   A+ +QPRLS
Sbjct:    61 IKGIVKV-CREFYIPENDRFGCIDVEFHSA--LKRSISLQEIKSVESLSSMAILKQPRLS 117

Query:   123 VVNVEKKVWDRV 134
             V  V    WD +
Sbjct:   118 VSEVTPAEWDTI 129

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

UNIPROTKB|Q5LLR4 SPO3857 "Uncharacterized protein" [Ruegeria pomeroyi DSS-3 (taxid:246200)]

 Score = 155 (59.6 bits), Expect = 1.6e-16, Sum P(2) = 1.6e-16
 Identities = 27/51 (52%), Positives = 34/51 (66%)

Query:     7 YWLLKTEPGEWSWEDQAANGGV-TKWDGVKNKQAQKNMKAMRLNELCFFYH 56
             YWL K+EP  W W+DQ A G    +WDGV+N QA+  M+AM L +  FFYH
Sbjct:     3 YWLFKSEPETWGWDDQVAKGDAGEEWDGVRNYQARNFMRAMALGDRGFFYH 53

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

TIGR_CMR|SPO_3857 SPO_3857 "conserved hypothetical protein" [Ruegeria pomeroyi DSS-3 (taxid:246200)]

 Score = 155 (59.6 bits), Expect = 1.6e-16, Sum P(2) = 1.6e-16
 Identities = 27/51 (52%), Positives = 34/51 (66%)

Query:     7 YWLLKTEPGEWSWEDQAANGGV-TKWDGVKNKQAQKNMKAMRLNELCFFYH 56
             YWL K+EP  W W+DQ A G    +WDGV+N QA+  M+AM L +  FFYH
Sbjct:     3 YWLFKSEPETWGWDDQVAKGDAGEEWDGVRNYQARNFMRAMALGDRGFFYH 53

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

UNIPROTKB|Q2GF45 ECH_1154 "Putative uncharacterized protein" [Ehrlichia chaffeensis str. Arkansas (taxid:205920)]

 Score = 196 (74.1 bits), Expect = 1.3e-15, P = 1.3e-15
 Identities = 44/126 (34%), Positives = 63/126 (50%)

Query:     7 YWLLKTEPGEWSWEDQAANGGVTKWDGVKNKQAQKNMKAMRLNELCFFYHXXXXXXXXXX 66
             YWLLKTEP ++SW+D   +  VT WD V N QAQ  +K M+ N+L FFYH          
Sbjct:     3 YWLLKTEPQDFSWDDMVRDN-VTVWDNVLNYQAQNYLKTMKYNDLAFFYHSGKEKGIIGI 61

Query:    67 XXXXLREWYXXXXXXXXXXXXXXXXXXMMRRAVDLKEMKRDQELKGWALFRQPRLSVVNV 126
                  +E+Y                  +  + V LK++K +  LK   + +QPRLSV  V
Sbjct:    62 VSID-KEFYLPNTNNKFGVVEVKTHIKL-NKTVFLKDIKSNPTLKTMLILKQPRLSVSQV 119

Query:   127 EKKVWD 132
              ++ W+
Sbjct:   120 TEQEWN 125

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

TIGR_CMR|ECH_1154 ECH_1154 "conserved hypothetical protein" [Ehrlichia chaffeensis str. Arkansas (taxid:205920)]

 Score = 196 (74.1 bits), Expect = 1.3e-15, P = 1.3e-15
 Identities = 44/126 (34%), Positives = 63/126 (50%)

Query:     7 YWLLKTEPGEWSWEDQAANGGVTKWDGVKNKQAQKNMKAMRLNELCFFYHXXXXXXXXXX 66
             YWLLKTEP ++SW+D   +  VT WD V N QAQ  +K M+ N+L FFYH          
Sbjct:     3 YWLLKTEPQDFSWDDMVRDN-VTVWDNVLNYQAQNYLKTMKYNDLAFFYHSGKEKGIIGI 61

Query:    67 XXXXLREWYXXXXXXXXXXXXXXXXXXMMRRAVDLKEMKRDQELKGWALFRQPRLSVVNV 126
                  +E+Y                  +  + V LK++K +  LK   + +QPRLSV  V
Sbjct:    62 VSID-KEFYLPNTNNKFGVVEVKTHIKL-NKTVFLKDIKSNPTLKTMLILKQPRLSVSQV 119

Query:   127 EKKVWD 132
              ++ W+
Sbjct:   120 TEQEWN 125

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

UNIPROTKB|Q0C4X5 HNE_0488 "Putative uncharacterized protein" [Hyphomonas neptunium ATCC 15444 (taxid:228405)]

 Score = 149 (57.5 bits), Expect = 5.7e-15, Sum P(2) = 5.7e-15
 Identities = 25/52 (48%), Positives = 34/52 (65%)

Query:     6 QYWLLKTEPGEWSWEDQAANGGVTK-WDGVKNKQAQKNMKAMRLNELCFFYH 56
             QYWL+K+EP  WSWE Q   G   + W GV+N  A+ +M+ M+L +  FFYH
Sbjct:     2 QYWLMKSEPDAWSWEQQVKKGEAGEIWSGVRNYTARNHMREMKLGDRVFFYH 53

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

UNIPROTKB|Q60BW0 MCA0353 "Putative uncharacterized protein" [Methylococcus capsulatus str. Bath (taxid:243233)]

 Score = 127 (49.8 bits), Expect = 1.0e-13, Sum P(2) = 1.0e-13
 Identities = 25/53 (47%), Positives = 36/53 (67%)

Query:     6 QYWLLKTEPGEWSWEDQAANGGVTK-WDGVKNKQAQKNMK-AMRLNELCFFYH 56
             +YWL+KTEPGE+  +D AA    T+ WDGV+N QA+  M+  M++ +   FYH
Sbjct:     2 RYWLMKTEPGEFGIDDLAARPAQTEPWDGVRNYQARNMMRDEMKVGDGVLFYH 54

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

UNIPROTKB|Q83BN8 CBU_1465 "Uncharacterized protein" [Coxiella burnetii RSA 493 (taxid:227377)]

 Score = 124 (48.7 bits), Expect = 5.3e-13, Sum P(2) = 5.3e-13
 Identities = 24/52 (46%), Positives = 34/52 (65%)

Query:     7 YWLLKTEPGEWSWEDQ-AANGGVTKWDGVKNKQAQKNMK-AMRLNELCFFYH 56
             YWLLK+EP  +S +D       +T+WDGV+N QA+  M+  M+  +L FFYH
Sbjct:     3 YWLLKSEPTSYSIDDLFREKNKITRWDGVRNYQARNFMRDGMKKGDLAFFYH 54

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	154
pfam01878	141	pfam01878, EVE, EVE domain	1e-40
COG2947	156	COG2947, COG2947, Uncharacterized conserved protei	9e-28

>gnl|CDD|216759 pfam01878, EVE, EVE domain

 Score =  133 bits (336), Expect = 1e-40
 Identities = 51/142 (35%), Positives = 77/142 (54%), Gaps = 11/142 (7%)

Query: 6   QYWLLKTEPGEWSWEDQAANGGVTKWDGVKNKQAQKNMKAMRLNELCFFYHSGARSRRVV 65
            YWL+K+EP  +S +D    G  T WDGV+N QA+  ++ M+  +L FFYHSG +   +V
Sbjct: 1   AYWLMKSEPDVYSIDDLEHVG-TTPWDGVRNYQARNFLRRMKPGDLVFFYHSGCKEPGIV 59

Query: 66  GVVSVLREWYEES----------GDGAGAGAVDVKEVGMMRRAVDLKEMKRDQELKGWAL 115
           G+  V+ E Y +              +    VDVK V   +R + LKE+K + EL+  +L
Sbjct: 60  GIAEVVSEAYPDPTQFDPESPYYDPKSRWYRVDVKFVKKFKRPITLKELKAEPELEDLSL 119

Query: 116 FRQPRLSVVNVEKKVWDRVCDL 137
            R  RLSV  V ++ W  + +L
Sbjct: 120 VRNGRLSVFPVTEEEWKLILEL 141

This domain was formerly known as DUF55. Crystal structures have shown that this domain is part of the PUA superfamily. This domain has been named EVE and is thought to be RNA-binding. Length = 141

>gnl|CDD|225498 COG2947, COG2947, Uncharacterized conserved protein [Function unknown]

 Score =  100 bits (250), Expect = 9e-28
 Identities = 50/151 (33%), Positives = 74/151 (49%), Gaps = 17/151 (11%)

Query: 5   RQYWLLKTEPGEWSWEDQAANGGVTKWDGVKNKQAQKNMKAMRLNELCFFYHSGARSRRV 64
             YWL+K+EP  +S E   A G    WDGV+N QA+  M+ M++ +L FFYHS  +   +
Sbjct: 2   AAYWLMKSEPDVFSIEMLKAVG-EEPWDGVRNYQARNFMRDMKIGDLGFFYHSNCKPPGI 60

Query: 65  VGVVSVLREWY-EESGDGAGAG--------------AVDVKEVGMMRRAVDLKEMKRDQE 109
           VG+  V    + + +     +                VDV+ V  + R V LKE+K + E
Sbjct: 61  VGLAEVCALAHPDPTQFDPASPYYDPKATPEDPRWYCVDVRFVRKLPRPVTLKELKANPE 120

Query: 110 LKGWALFRQ-PRLSVVNVEKKVWDRVCDLGG 139
           L   +L  +  RLSV  V  + W  +  LGG
Sbjct: 121 LAEMSLLVKGNRLSVQPVTPEEWKEILRLGG 151

Length = 156

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	154
COG2947	156	Uncharacterized conserved protein [Function unknow	100.0
KOG3383	187	consensus Uncharacterized conserved protein [Funct	100.0
PF01878	143	EVE: EVE domain; InterPro: IPR002740 The EVE domai	100.0
PRK00809	144	hypothetical protein; Provisional	99.96
PRK02268	141	hypothetical protein; Provisional	98.98
COG1673	151	Uncharacterized protein conserved in archaea [Func	97.11
COG4933	124	Uncharacterized conserved protein [Function unknow	96.21
PRK12279	311	50S ribosomal protein L22/unknown domain fusion pr	93.89
PF04146	140	YTH: YT521-B-like domain; InterPro: IPR007275 A pr	89.66
PF10539	130	Dev_Cell_Death: Development and cell death domain;	80.63

>COG2947 Uncharacterized conserved protein [Function unknown]

Probab=100.00  E-value=2.1e-67  Score=408.09  Aligned_cols=135  Identities=37%  Similarity=0.585  Sum_probs=128.6

Q ss_pred             ceeEEeecCCCceehhcchhcCCceeecccccHHHHHHHHhccCCCEEEEEEeCCCCCeEEEEEEEeeecccCCCC----
Q 039512            5 RQYWLLKTEPGEWSWEDQAANGGVTKWDGVKNKQAQKNMKAMRLNELCFFYHSGARSRRVVGVVSVLREWYEESGD----   80 (154)
Q Consensus         5 m~YWLlKsEP~~fsiddl~~~~~~~~WdGVRNyqArn~lr~Mk~GD~~~fYHS~~~~~gIvGiaeVv~~aypD~t~----   80 (154)
                      ++||||||||++|||++|++. +++.||||||||||||||+|++||++|||||||++|||||||+|++++|||+|+    
T Consensus         2 ~~yWLmKSEP~~~s~~~l~~~-g~~~W~GVRNYqARNfmR~M~iGD~~fFYHSNc~~pgIvGl~~V~~~a~pD~tq~d~~   80 (156)
T COG2947           2 AAYWLMKSEPDVFSIEMLKAV-GEEPWDGVRNYQARNFMRDMKIGDLGFFYHSNCKPPGIVGLAEVCALAHPDPTQFDPA   80 (156)
T ss_pred             CceeeeecCcccccHHHHHHh-CcCcccchHHHHHHHHHHhcccCceEEEEecCCCCCCceehhhhhhccCCCccccCCC
Confidence            579999999999999999985 569999999999999999999999999999999999999999999999999995    


Q ss_pred             -----------CCCeeEEEEEEeeeeCCccChhhHhcCccccCceeccc-CCCcceecCHHHHHHHHHhcCC
Q 039512           81 -----------GAGAGAVDVKEVGMMRRAVDLKEMKRDQELKGWALFRQ-PRLSVVNVEKKVWDRVCDLGGG  140 (154)
Q Consensus        81 -----------~prw~~Vdv~~~~~l~~pv~L~~Lk~~p~L~~m~llr~-~RLSV~pVt~eew~~I~~l~~~  140 (154)
                                 +|||++|||+|+++|++||||++||+++++++|.|+++ +||||+|||++||.+|++|++.
T Consensus        81 spYyDPka~~e~pRW~~Vdv~~v~~~~~~vtL~~lK~~~~~~~~~~l~~g~RLSV~PVt~~ew~~i~~l~~~  152 (156)
T COG2947          81 SPYYDPKATPEDPRWYCVDVRFVRKLPRPVTLKELKANPELAEMSLLVKGNRLSVQPVTPEEWKEILRLGGL  152 (156)
T ss_pred             CcccCcccccCCCCeeEEeeHHHhhcCCCccHHHHhcCcchhhhhhhhccCeeeeeeCCHHHHHHHHHhhCC
Confidence                       47899999999999999999999999999999997765 8999999999999999999963

>KOG3383 consensus Uncharacterized conserved protein [Function unknown]

Probab=100.00  E-value=3.2e-59  Score=367.12  Aligned_cols=152  Identities=51%  Similarity=0.994  Sum_probs=139.6

Q ss_pred             CCCC-ceeEEeecCCC---------ceehhcchhcC-CceeecccccHHHHHHHHhccCCCEEEEEEeCCCCCeEEEEEE
Q 039512            1 MGKE-RQYWLLKTEPG---------EWSWEDQAANG-GVTKWDGVKNKQAQKNMKAMRLNELCFFYHSGARSRRVVGVVS   69 (154)
Q Consensus         1 m~~~-m~YWLlKsEP~---------~fsiddl~~~~-~~~~WdGVRNyqArn~lr~Mk~GD~~~fYHS~~~~~gIvGiae   69 (154)
                      |+++ .+||||||||+         .|||+||+..+ +++.||||||||||||||+||.||++||||||||.|+|+|+++
T Consensus         3 ed~~kr~yWLmKtEpe~r~~kginv~fs~edle~~~~k~~~WdGVrNyqArn~lr~mklGd~aFfYhSncK~p~i~Gl~~   82 (187)
T KOG3383|consen    3 EDKTKRRYWLMKTEPEPRYVKGINVEFSWEDLESNGGKISKWDGVRNYQARNNLRSMKLGDLAFFYHSNCKSPCIVGLVE   82 (187)
T ss_pred             CCcccceeEEEecCCCcccccccceeeehhhhhhcCCccccccchhhHHHHHHHHhhcccceeEEEecCCCCcceeeeee
Confidence            3454 45999999999         89999998854 4788999999999999999999999999999999999999999


Q ss_pred             EeeecccCCCC---------------CCCeeEEEEEEeeeeCCccChhhHhcCc----cccCceecccCCCcceecCHHH
Q 039512           70 VLREWYEESGD---------------GAGAGAVDVKEVGMMRRAVDLKEMKRDQ----ELKGWALFRQPRLSVVNVEKKV  130 (154)
Q Consensus        70 Vv~~aypD~t~---------------~prw~~Vdv~~~~~l~~pv~L~~Lk~~p----~L~~m~llr~~RLSV~pVt~ee  130 (154)
                      |++++|||.++               +|||.+|||+++..+.++|+|+|||.|.    .|++|.||+++||||+||++++
T Consensus        83 i~~e~ypDd~~~~~ndp~ydp~st~qnprw~~VdVq~~~~m~r~v~L~ElK~hk~~g~~lK~mvLf~r~RLSi~pv~~ee  162 (187)
T KOG3383|consen   83 ISREWYPDDAEGVENDPYYDPESTPQNPRWGAVDVQAIGEMRRCVDLKELKMHKDKGIILKGMVLFRRPRLSIVPVEEEE  162 (187)
T ss_pred             ehhccCCCccccccCCCCcCcccccCCCccceeeehhhhhhhccccHHHHhhccccCccccceEEeeccccceeecCHHH
Confidence            99999999883               6899999999999999999999999774    6899999999999999999999


Q ss_pred             HHHHHHhcCCCCCCCCCCCCCC
Q 039512          131 WDRVCDLGGGFDGDGEKKDDEG  152 (154)
Q Consensus       131 w~~I~~l~~~~~~~~~~~~~~~  152 (154)
                      |++|++|+.+.+++|.+|-...
T Consensus       163 w~fi~eL~~~~ep~~~~~~~~~  184 (187)
T KOG3383|consen  163 WNFICELGNGFEPDGKEDCESS  184 (187)
T ss_pred             HHHHHHhccCCCCccccccccc
Confidence            9999999999999998875433

>PF01878 EVE: EVE domain; InterPro: IPR002740 The EVE domain is part of the wider PUA domain superfamily

Probab=100.00  E-value=1.7e-47  Score=291.21  Aligned_cols=131  Identities=36%  Similarity=0.657  Sum_probs=116.7

Q ss_pred             eeEEeecCCCceehhcchhcCCceeecccccHHHHHHHHhccCCCEEEEEEeCCCCCeEEEEEEEeeecccCCCC-----
Q 039512            6 QYWLLKTEPGEWSWEDQAANGGVTKWDGVKNKQAQKNMKAMRLNELCFFYHSGARSRRVVGVVSVLREWYEESGD-----   80 (154)
Q Consensus         6 ~YWLlKsEP~~fsiddl~~~~~~~~WdGVRNyqArn~lr~Mk~GD~~~fYHS~~~~~gIvGiaeVv~~aypD~t~-----   80 (154)
                      +|||+|+||+.|||+|+.. .+.+.|+|||||||+|+|+.||+||+||||||+|+.+||||+++|++++|+|+++     
T Consensus         1 ~YWl~~~~P~~~~~~~~~~-~~~~~~~gv~~~~~~~~l~~mk~GD~vifY~s~~~~~~ivai~~V~~~~~~d~~~~~~~~   79 (143)
T PF01878_consen    1 RYWLLKANPENFSIDDLEH-WGVTVWDGVRNYQARKNLKRMKPGDKVIFYHSGCKERGIVAIGEVVSEPYPDPTAFDPDS   79 (143)
T ss_dssp             -EEEEEEBTTTSHHHHHHH-HSEEECHTEEEHHHHHHHHC--TT-EEEEEETSSSS-EEEEEEEEEEEEEE-GGGTSTTS
T ss_pred             CEEEEEeCCcccCHHHhcc-cceEEEcCEeehhhhhhhhcCCCCCEEEEEEcCCCCCEEEEEEEEeccccCCCccccccc
Confidence            6999999999999999955 4689999999999999999999999999999999999999999999999999885     


Q ss_pred             -------CCCeeEEEEEEeeeeCCccChhhHhcCccccCceecccCCCcceecCHHHHHHHHHh
Q 039512           81 -------GAGAGAVDVKEVGMMRRAVDLKEMKRDQELKGWALFRQPRLSVVNVEKKVWDRVCDL  137 (154)
Q Consensus        81 -------~prw~~Vdv~~~~~l~~pv~L~~Lk~~p~L~~m~llr~~RLSV~pVt~eew~~I~~l  137 (154)
                             +|+|++|+|++++.|++||+|++||+++.|.+|.+++++|+|++|||++||++|++|
T Consensus        80 ~~~~~~~~~~~~~v~v~~~~~~~~pi~l~~Lk~~~~l~~l~~i~~~r~s~~~it~~~~~~I~~~  143 (143)
T PF01878_consen   80 PYYDPKSNPKPYRVDVEYVKIFEKPIPLKELKAEPELENLSFIRNKRLSVFPITEEDFEAIMEM  143 (143)
T ss_dssp             TTBTTTSCSSSEEEEEEEEEEEEEEEEHHHHHC-GGGTTSHHHHTTT-SEEEE-HHHHHHHHHH
T ss_pred             cCcCCccCCCeeEEEEEEEEecCCCcCHHHHhcCCccccChhhhcCCcCeEEECHHHHHHHHhC
Confidence                   468999999999999999999999999999999999999999999999999999987

The function of this domain is not known but, given the structural similarities to PUA, is likely to involve RNA binding []. ; PDB: 2G2X_B 2AR1_A 3EOP_A 2EVE_A 2HD9_A 2ZBN_A 1WMM_A 2P5D_A 2GBS_A 1ZCE_A.

>PRK00809 hypothetical protein; Provisional

Probab=99.96  E-value=6.7e-30  Score=198.30  Aligned_cols=121  Identities=20%  Similarity=0.413  Sum_probs=102.3

Q ss_pred             ceeEEeecCCCceehhcchhcCCceeecccccHHHHHHHHhccCCCEEEEEEeC-----CCCCeEEEEEEEeeecccCCC
Q 039512            5 RQYWLLKTEPGEWSWEDQAANGGVTKWDGVKNKQAQKNMKAMRLNELCFFYHSG-----ARSRRVVGVVSVLREWYEESG   79 (154)
Q Consensus         5 m~YWLlKsEP~~fsiddl~~~~~~~~WdGVRNyqArn~lr~Mk~GD~~~fYHS~-----~~~~gIvGiaeVv~~aypD~t   79 (154)
                      |+|||.-++.+.|-+-  .+   .-.| ||. .-.||+||+||+||++|||||+     |+.++||||++|++++|||+|
T Consensus         1 ~~yWi~~~~~~~~~~~--~~---~gv~-g~~-~~~rn~lr~Mk~GD~v~fYhs~~~~~~~~~~~ivgi~eV~~~~y~D~t   73 (144)
T PRK00809          1 MTYWLCITNEDNWEVI--KD---KNVW-GVP-ERYKNTIEKVKPGDKLIIYVSQEYGAERLPGKIVGIYEVVSEWYEDST   73 (144)
T ss_pred             CceEEEecCHHHHHHH--Hh---CCEe-ecc-hhhhhHHhhCCCCCEEEEEECCccCCCCCCceEEEEEEEecCcccCCc
Confidence            7899999977776433  22   2367 674 4468999999999999999999     889999999999999999999


Q ss_pred             C----------CCCeeEEEEEEeeeeCCccChhhH-------hcCccccCceecccCCCcceecCHHHHHHHHH
Q 039512           80 D----------GAGAGAVDVKEVGMMRRAVDLKEM-------KRDQELKGWALFRQPRLSVVNVEKKVWDRVCD  136 (154)
Q Consensus        80 ~----------~prw~~Vdv~~~~~l~~pv~L~~L-------k~~p~L~~m~llr~~RLSV~pVt~eew~~I~~  136 (154)
                      +          +++|++|||+|+.+|++||||++|       |..+.+. +.|+|++|   +||++++|+.|++
T Consensus        74 ~~~p~~~~~~~~~~p~rvdV~~~~~~~~~v~l~~L~~~L~fik~~~~w~-~~l~R~~~---~~I~~~d~~~I~~  143 (144)
T PRK00809         74 PIFPAEPVRPKEIYPYRVKLKPVKIFEEPIDFKPLIPKLKFIENKKQWS-GHLRNRAM---RPIPEEDYKLIEE  143 (144)
T ss_pred             cCCCccccCCCCCceEEEEEEEeeecCCcccHHHHHhhhhhhhcccccc-hhhhcCCC---ccCCHHHHHHHhc
Confidence            6          467999999999999999999999       5555555 66778888   9999999999975

>PRK02268 hypothetical protein; Provisional

Probab=98.98  E-value=2.5e-09  Score=83.32  Aligned_cols=123  Identities=11%  Similarity=0.105  Sum_probs=90.5

Q ss_pred             CceeEEeecCCCceehhcchhcCCceeecccccHHHHHHHHhccCCCEEEEEEeCC------CCCeEEEEEEEeee-ccc
Q 039512            4 ERQYWLLKTEPGEWSWEDQAANGGVTKWDGVKNKQAQKNMKAMRLNELCFFYHSGA------RSRRVVGVVSVLRE-WYE   76 (154)
Q Consensus         4 ~m~YWLlKsEP~~fsiddl~~~~~~~~WdGVRNyqArn~lr~Mk~GD~~~fYHS~~------~~~gIvGiaeVv~~-ayp   76 (154)
                      +|+|||.-++.+.+-+--  +   ...| || |+--++.|+.||+||.++||.+-.      +.++++||++|+++ +|.
T Consensus         1 m~~yWI~v~s~~hv~~g~--~---~gf~-qv-~hgK~apl~RmkpGD~ivyYsp~~~~~~~~~~qaftAig~V~~~~~Yq   73 (141)
T PRK02268          1 MMRYWIGVVSAEHVRRGV--E---GGFM-QV-CHGKAAPLRRMKPGDWIIYYSPKTTFGGKDKLQAFTAIGKVKDDEPYQ   73 (141)
T ss_pred             CcceEEEEccHHHHHHHH--h---CCEE-Ee-CCCccchhhcCCCCCEEEEEeceEecCCCcccceEEEEEEEcCCceEe
Confidence            388999888776653331  1   2445 66 455577999999999999997321      46899999999998 776


Q ss_pred             CCCCCCCe--eEEEEEEeeeeCCccChhhHhcCccccCceeccc----CCCcceecCHHHHHHHHHhc
Q 039512           77 ESGDGAGA--GAVDVKEVGMMRRAVDLKEMKRDQELKGWALFRQ----PRLSVVNVEKKVWDRVCDLG  138 (154)
Q Consensus        77 D~t~~prw--~~Vdv~~~~~l~~pv~L~~Lk~~p~L~~m~llr~----~RLSV~pVt~eew~~I~~l~  138 (154)
                      -.- .+.+  ++++|++...  .+++++.|.  +.|+...--++    -|-.+++|++++|+.|.+..
T Consensus        74 ~~m-~~~f~P~Rr~v~~~~~--~e~pi~pLi--~~L~Fi~~k~~Wg~~fr~g~~eI~e~Df~~I~~am  136 (141)
T PRK02268         74 VEM-APGFIPWRRDVDYYPC--AETPIRPLL--DHLDFTEDRKNWGYQFRFGHFEISKHDFETIASAM  136 (141)
T ss_pred             ccc-CCCceeEEEEeeEeec--CccchHHhh--cccceeeCcchhhHhhcCCcEecCHHHHHHHHHHh
Confidence            221 3334  8999999844  799999998  66666555443    26789999999999998754

>COG1673 Uncharacterized protein conserved in archaea [Function unknown]

Probab=97.11  E-value=0.00046  Score=54.59  Aligned_cols=127  Identities=18%  Similarity=0.261  Sum_probs=87.3

Q ss_pred             CCceeEEeecCCCceehhcchhcCCceeecccccHHHHHHHHhccCCCEEEEEEeCC-----CCCeEEEEEEEeeecccC
Q 039512            3 KERQYWLLKTEPGEWSWEDQAANGGVTKWDGVKNKQAQKNMKAMRLNELCFFYHSGA-----RSRRVVGVVSVLREWYEE   77 (154)
Q Consensus         3 ~~m~YWLlKsEP~~fsiddl~~~~~~~~WdGVRNyqArn~lr~Mk~GD~~~fYHS~~-----~~~gIvGiaeVv~~aypD   77 (154)
                      ..|.|||.-++-|.|-+   ..  ....| |+|- -..|...-.+.||+..+|.+..     .++-|||+.+|+++.|.|
T Consensus         4 ~l~~Yw~~~~~~D~~kv---~~--~k~i~-g~~~-k~~~v~~~ik~g~~~v~y~~~~~~~~~~~~~iv~v~ev~se~y~d   76 (151)
T COG1673           4 KLMEYWLCITGEDNWKV---RK--EKGIY-GVRE-KHENVEEKIKEGDRLVIYVRQRGEKERHEPKIVGVFEVGSEPYSD   76 (151)
T ss_pred             cHHHHHhhhccCCccee---ec--cccee-ecCC-CCccHHHhhCccceeEEEeeecchhhccCccEEEEEEeecccccc
Confidence            45789997777443322   22  24678 8872 1245665699999999999753     367899999999999999


Q ss_pred             CCC----CC------CeeEEEEEEeeeeCCccChhhHhcCccccCceeccc--CCC---cceecCHHHHHHHHHhc
Q 039512           78 SGD----GA------GAGAVDVKEVGMMRRAVDLKEMKRDQELKGWALFRQ--PRL---SVVNVEKKVWDRVCDLG  138 (154)
Q Consensus        78 ~t~----~p------rw~~Vdv~~~~~l~~pv~L~~Lk~~p~L~~m~llr~--~RL---SV~pVt~eew~~I~~l~  138 (154)
                      .+.    ++      -...|+++.+.-+..+|.++.++  +.++.+.--.+  +.|   -..++.+++...|.+|.
T Consensus        77 s~r~f~~~~~~~~~~~~~r~k~~p~~i~e~~i~~k~~~--~~~~fi~~k~~~~~~l~~~~~r~~pe~d~~li~~l~  150 (151)
T COG1673          77 SSRIFKIDPFRGDETFPYRVKIRPVKVGEVHIKFKPLI--DKLKFIHNKKKWSGHLMGKLMREIPEEDYKLIEELL  150 (151)
T ss_pred             ccccccCCCCCCccccccccCcceEEEEecccCcchhh--hhHHHhHhhHHHHHHHHHHhcccCchhhHHHHHHhh
Confidence            885    11      14789999999999899888877  44444433222  222   35677777777776654

>COG4933 Uncharacterized conserved protein [Function unknown]

Probab=96.21  E-value=0.0058  Score=46.87  Aligned_cols=80  Identities=24%  Similarity=0.322  Sum_probs=58.1

Q ss_pred             eeecccccHHHHHHHH-hccCCCEEEEEEeCCCCCeEEEEEEEeeec----------ccCCCC-------------CCCe
Q 039512           29 TKWDGVKNKQAQKNMK-AMRLNELCFFYHSGARSRRVVGVVSVLREW----------YEESGD-------------GAGA   84 (154)
Q Consensus        29 ~~WdGVRNyqArn~lr-~Mk~GD~~~fYHS~~~~~gIvGiaeVv~~a----------ypD~t~-------------~prw   84 (154)
                      ..-||++||.-|...- ..-.|+.|++|.|+ +..+|||-..+-+.-          |..+..             ..+-
T Consensus        10 ~Ifdg~K~velrR~~p~~~~~~~~~~VY~Ts-P~~aVvGef~~e~V~~~~~~siw~~~~~~~~i~~~~e~~~Y~~G~k~A   88 (124)
T COG4933          10 AIFDGVKKVELRRITPVPIVEESTVIVYATS-PVKAVVGEFTAERVEQVAIESIWRKAGKSGSIKIGAEYLEYFEGAKEA   88 (124)
T ss_pred             HHhcCcceEEEEEecCCCcccCcEEEEEecC-chhheEEEEEeeeEEEcchHHHHHHhcccccccchHHHHHHHhcccee
Confidence            4568888888665554 37789999999999 899999976553332          111111             1235


Q ss_pred             eEEEEEEeeeeCCccChhhHhcCcc
Q 039512           85 GAVDVKEVGMMRRAVDLKEMKRDQE  109 (154)
Q Consensus        85 ~~Vdv~~~~~l~~pv~L~~Lk~~p~  109 (154)
                      ++..+...+++.+|++|++++..+.
T Consensus        89 ~ai~~~~p~~y~~P~~L~e~~~~~~  113 (124)
T COG4933          89 HAIEVSKPRRYTRPVTLEELRRRIG  113 (124)
T ss_pred             EEEEeCCceecCCCcCHHHHhccCC
Confidence            8888999999999999999997644

>PRK12279 50S ribosomal protein L22/unknown domain fusion protein; Provisional

Probab=93.89  E-value=0.18  Score=44.17  Aligned_cols=58  Identities=19%  Similarity=0.137  Sum_probs=46.9

Q ss_pred             cCCCEEEEEEeCCCCCeEEEEEEEeeecccCCCC----------------------CCCeeEEEEEEeeeeCCccChhhH
Q 039512           47 RLNELCFFYHSGARSRRVVGVVSVLREWYEESGD----------------------GAGAGAVDVKEVGMMRRAVDLKEM  104 (154)
Q Consensus        47 k~GD~~~fYHS~~~~~gIvGiaeVv~~aypD~t~----------------------~prw~~Vdv~~~~~l~~pv~L~~L  104 (154)
                      ..+|.|++|.|+ +...|||..+|-+----.|..                      ...-++..|.-++.|.+|++|.+|
T Consensus       220 ~~~~~VvIYaTs-PvkkIVGef~i~~Ii~~~P~~lW~k~~~~sGIsk~~F~~Yf~g~~~a~Ai~I~~~~~y~~Pi~L~~l  298 (311)
T PRK12279        220 NKVLRVLVYVTS-PTKKVVGEFDLESVEIGAISSIWRKYGKQSVISKKEYDAYYEGKDKAHALVSKKAYKYRNPKDLSEY  298 (311)
T ss_pred             CCCCEEEEEecC-CCcEEEEEEEEEEEEeCCHHHHHHHHhhccCCCHHHHHHHhCCCceEEEEEeCCceeCCCCCCHHHc
Confidence            578999999999 899999999987765433331                      123588999999999999999999


Q ss_pred             h
Q 039512          105 K  105 (154)
Q Consensus       105 k  105 (154)
                      .
T Consensus       299 ~  299 (311)
T PRK12279        299 N  299 (311)
T ss_pred             C
Confidence            4

>PF04146 YTH: YT521-B-like domain; InterPro: IPR007275 A protein of the YTH family has been shown to selectively remove transcripts of meiosis-specific genes expressed in mitotic cells []

Probab=89.66  E-value=1.6  Score=33.54  Aligned_cols=96  Identities=11%  Similarity=0.175  Sum_probs=57.8

Q ss_pred             ceeEEeecCCCceehhcchhcCCceeecccccHHHHHHHHhccCCCEEEEEEeCCCCCeEEEEEEEeeecccCCCC----
Q 039512            5 RQYWLLKTEPGEWSWEDQAANGGVTKWDGVKNKQAQKNMKAMRLNELCFFYHSGARSRRVVGVVSVLREWYEESGD----   80 (154)
Q Consensus         5 m~YWLlKsEP~~fsiddl~~~~~~~~WdGVRNyqArn~lr~Mk~GD~~~fYHS~~~~~gIvGiaeVv~~aypD~t~----   80 (154)
                      .+|.++||.    +.+++...-....|.=-+. ..+.+-++.+.++.|++.=|-.......|+|+.++...++.+.    
T Consensus         2 ~rfFiiKS~----~~~ni~~s~~~gvW~t~~~-~~~~L~~Af~~~~~V~L~FSvn~S~~F~G~A~M~s~~~~~~~~~~w~   76 (140)
T PF04146_consen    2 ARFFIIKSF----NEENIHLSIKYGVWATQPK-NEKKLNEAFKESRNVYLFFSVNGSGHFQGYARMTSPIDPDSPKPFWQ   76 (140)
T ss_dssp             -EEEEEEES----SCHHHHHHHHCTEEE--CC-CHHHHHHHHHHSS-EEEEEEETTTSEEEEEEEEECECCSSS------
T ss_pred             cEEEEEEEC----CHHHHHHHHhCCEEccccc-chHHHHHHHHhCCCEEEEEeecCcceEEEEEEEccCCCCcccCcccc
Confidence            479999985    4456544323567864442 2344555688888777766655789999999999996555321    


Q ss_pred             ----CCCe-eEEEEEEeeeeCCccChhhHhcC
Q 039512           81 ----GAGA-GAVDVKEVGMMRRAVDLKEMKRD  107 (154)
Q Consensus        81 ----~prw-~~Vdv~~~~~l~~pv~L~~Lk~~  107 (154)
                          ..+| ....|+-+..  ..|+...++..
T Consensus        77 ~~~~~~~~~g~F~v~Wl~~--~~lpf~~~~hl  106 (140)
T PF04146_consen   77 QDSSSSKWGGPFRVEWLRV--KDLPFSKLRHL  106 (140)
T ss_dssp             SS-SGCGG-SEEEEEEEE---S-EEHHHHTT-
T ss_pred             ccccccccCCceEEEEEEC--CcCChHHhccc
Confidence                1233 3355666555  67888888854

It has been speculated that in higher eukaryotic YTH-family members may be involved in similar mechanaisms to suppress gene regulation during gametogenesis or general silencing. The rat protein YT521-B, Q9QY02 from SWISSPROT, is a tyrosine-phosphorylated nuclear protein, that interacts with the nuclear transcriptosomal component scaffold attachment factor B, and the 68kDa Src substrate associated during mitosis, Sam68. In vivo splicing assays demonstrated that YT521-B modulates alternative splice site selection in a concentration-dependent manner []. The domain is predicted to have four alpha helices and six beta strands []. In plant cells environmental stimuli, which light, pathogens, hormones, and abiotic stresses, elicit changes in the cytosolic Ca levels but little is known of the cytosolic-nuclear Ca-signaling pathway; where gene regulation occurs to respond appropriately to the stress. It has been demonstrated that two novel Arabidopsis thaliana (Mouse-ear cress) proteins, (ECT1 and ECT2), specifically associated with Calcineurin B-Like-Interacting Protein Kinase1 (CIPK1), a member of Ser/Thr protein kinases that interact with the calcineurin B-like Ca-binding proteins. These two proteins contain a very similar C-terminal region (180 amino acids in length, 81% similarity), which is required and sufficient for both interaction with CIPK1 and translocation to the nucleus. This domain, the YTH-domain, is conserved across all eukaryotes and suggests that the conserved C-terminal region plays a critical role in relaying the cytosolic Ca-signals to the nucleus, thereby regulating gene expression [].; PDB: 2YUD_A 2YU6_A.

>PF10539 Dev_Cell_Death: Development and cell death domain; InterPro: IPR013989 The DCD (Development and Cell Death) domain is found in plant proteins involved in development and cell death

Probab=80.63  E-value=19  Score=27.90  Aligned_cols=90  Identities=11%  Similarity=0.085  Sum_probs=58.0

Q ss_pred             HHHHhccCCCEEEEEEeCCCCCeEEEEEEEeeec--ccCCCC--C-C----Ce-eEEEEEEeeeeCCccChhhHhcCccc
Q 039512           41 KNMKAMRLNELCFFYHSGARSRRVVGVVSVLREW--YEESGD--G-A----GA-GAVDVKEVGMMRRAVDLKEMKRDQEL  110 (154)
Q Consensus        41 n~lr~Mk~GD~~~fYHS~~~~~gIvGiaeVv~~a--ypD~t~--~-p----rw-~~Vdv~~~~~l~~pv~L~~Lk~~p~L  110 (154)
                      -+.+.+++|...|.|.=+  .+-..||.|-++.+  -.+|++  + +    ++ ..|.++..... .|++-++.|  +++
T Consensus        30 ~~V~~I~pG~~LFLfn~~--~r~L~GifeA~S~G~~ni~p~Af~~~~~~~~~fPAQVrf~i~~~C-~PL~E~~fk--~aI  104 (130)
T PF10539_consen   30 DFVKKIKPGMPLFLFNYS--DRKLYGIFEATSDGGMNIEPYAFSGSGSGESPFPAQVRFRIRWDC-PPLPESQFK--PAI  104 (130)
T ss_pred             hHHheeCCCCEEEEEEcC--CCEEEEEEEecCCCccCcChhhhCCCCCCCcccceEEEEEEeeee-ecCCHHHHH--HHH
Confidence            377789999999999877  58999999999987  356665  1 2    33 34555555444 488888888  666


Q ss_pred             cCceecccCCCcceecCHHHHHHHHHh
Q 039512          111 KGWALFRQPRLSVVNVEKKVWDRVCDL  137 (154)
Q Consensus       111 ~~m~llr~~RLSV~pVt~eew~~I~~l  137 (154)
                      ++-..-  +.---.-+|..|-..+++|
T Consensus       105 ~~Ny~~--~~kF~~eLs~~Qv~~L~~L  129 (130)
T PF10539_consen  105 KDNYYD--KNKFRFELSHQQVRKLLSL  129 (130)
T ss_pred             HHhCCC--CCcccCcCCHHHHHHHHHh
Confidence            553322  1122234455555555443

The DCD domain is an ~130 amino acid long stretch that contains several mostly invariable motifs. These include a FGLP and a LFL motif at the N terminus and a PAQV and a PLxE motif towards the C terminus of the domain. The DCD domain is present in proteins with different architectures. Some of these proteins contain additional recognizable motifs, like the KELCH repeats or the ParB domain []. Biological studies indicate a role of these proteins in phytohormone response, embryo development and programmed cell death by pathogens or ozone. The predicted secondary structure of the DCD domain is mostly composed of beta strands and confined by an alpha-helix at the N- and at the C terminus []. Proteins known to contain a DCD domain are listed below: Carrot B2 protein. Pea Gda-1 protein. Soybean N-rich protein (NRP).

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	154
2gbs_A	145	Nmr Structure Of Rpa0253 From Rhodopseudomonas Palu		6e-11
2ar1_A	172	Structure Of Hypothetical Protein From Leishmania M		3e-08
1zce_A	155	X-Ray Crystal Structure Of Protein Atu2648 From Agr		4e-08
3eop_A	176	Crystal Structure Of The Duf55 Domain Of Human Thym		2e-06
2g2x_A	157	X-ray Crystal Structure Protein Q88ch6 From Pseudom		5e-06
2eve_A	157	X-Ray Crystal Structure Of Protein Pspto5229 From P		1e-04

>pdb|2GBS|A Chain A, Nmr Structure Of Rpa0253 From Rhodopseudomonas Palustris. Northeast Structural Genomics Consortium Target Rpr3 Length = 145

Iteration: 1
 Score = 63.2 bits (152), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 38/130 (29%), Positives = 54/130 (41%), Gaps = 1/130 (0%)
Query: 7   YWLLKTEPGEWSWEDQAANGGVTK-WDGVKNKQAQKNMKAMRLNELCFFYHXXXXXXXXX 65
           YWL+K+EP  WSW+ Q A G   + W GV+N  A+ +M AMR  +  F+YH         
Sbjct: 3   YWLVKSEPSVWSWDQQVAKGAAGEAWTGVRNHSAKLHMVAMRRGDRAFYYHSNEGKEIVG 62
Query: 66  XXXXXLREWYXXXXXXXXXXXXXXXXXXMMRRAVDLKEMKRDQELKGWALFRQPRLSVVN 125
                   +                    ++  V L  +K +  L   AL +  RLSV  
Sbjct: 63  IAEIIREAYPDPTDASGKFVCVDIKADKPLKTPVTLAAVKAEPRLADMALMKYSRLSVQP 122
Query: 126 VEKKVWDRVC 135
           V  + W  VC
Sbjct: 123 VTAEEWKLVC 132

>pdb|2AR1|A Chain A, Structure Of Hypothetical Protein From Leishmania Major Length = 172

Iteration: 1
 Score = 53.9 bits (128), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 41/136 (30%), Positives = 58/136 (42%), Gaps = 16/136 (11%)
Query: 6   QYWLLKTEPGEWSWEDQAANGGVTKWDGVKNKQAQKNMKAMRLNELCFFYHXXXXXXXXX 65
            YWLLK+EP ++S +D  A    + WDGV+N  A+ NM+AM + +   FYH         
Sbjct: 20  HYWLLKSEPHKFSIDD-LAKQKTSPWDGVRNYAARNNMRAMSVGDKVLFYHSNTKEPGVA 78
Query: 66  XXXXXLREWYXXXXXXXXXXXXXXXXXXMMR---RAVDLK------------EMKRDQEL 110
                +R  Y                    +   + VD+K            E+K  +EL
Sbjct: 79  GLAEVVRLAYDDFTALDKTSEYFDPKATKEKNPWKMVDVKFVARWDTVLTLHELKSRREL 138
Query: 111 KGWALFRQPRLSVVNV 126
           +  ALF Q RLSV  V
Sbjct: 139 QKMALFTQRRLSVQPV 154

>pdb|1ZCE|A Chain A, X-Ray Crystal Structure Of Protein Atu2648 From Agrobacteriu Tumefaciens. Northeast Structural Genomics Consortium Targe Length = 155

Iteration: 1
 Score = 53.9 bits (128), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 39/132 (29%), Positives = 58/132 (43%), Gaps = 2/132 (1%)
Query: 6   QYWLLKTEPGEWSWEDQAANGGVT-KWDGVKNKQAQKNMKAMRLNELCFFYHXXXXXXXX 64
            YWL K+EP +WSWE Q A G    +W GV+N QA+ N +A ++ +  FFYH        
Sbjct: 3   NYWLYKSEPFKWSWEXQKAKGETGEEWTGVRNYQARNNXRAXKIGDKGFFYHSNEGLDVV 62
Query: 65  XXXXX-XLREWYXXXXXXXXXXXXXXXXXXMMRRAVDLKEMKRDQELKGWALFRQPRLSV 123
                  L                         + V LK++K + +L+  +L    RLSV
Sbjct: 63  GIVEVCALSHPDSTAEGDLKWDCVDIRAVCDXPQPVSLKDVKANPKLEKXSLVTSXRLSV 122
Query: 124 VNVEKKVWDRVC 135
             V ++ +  VC
Sbjct: 123 QPVTEEEYLEVC 134

>pdb|3EOP|A Chain A, Crystal Structure Of The Duf55 Domain Of Human Thymocyte Nuclear Protein 1 Length = 176

Iteration: 1
 Score = 47.8 bits (112), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 42/161 (26%), Positives = 64/161 (39%), Gaps = 33/161 (20%)
Query: 7   YWLLKTEPGE---------WSWED-QAANGGVTKWDGVKNKQAQKNMKAMRLNELCFFYH 56
           +WL+K+EP           +S ED +A     T WDGV+N QA+  ++AM+L E  FFYH
Sbjct: 3   HWLMKSEPESRLEKGVDVKFSIEDLKAQPKQTTCWDGVRNYQARNFLRAMKLGEEAFFYH 62
Query: 57  XXXXXXXXXXXXXXLREWYXXXXXXXXXXXXXXXXXX---------------MMRRAVDL 101
                         ++E Y                                 MM+R + L
Sbjct: 63  SNCKEPGIAGLMKIVKEAYPDHTQFEKNNPHYDPSSKEDNPKWSMVDVQFVRMMKRFIPL 122
Query: 102 KEMKRDQE--------LKGWALFRQPRLSVVNVEKKVWDRV 134
            E+K   +        LK   LF + RLS+  + ++ +D V
Sbjct: 123 AELKSYHQAHKATGGPLKNMVLFTRQRLSIQPLTQEEFDFV 163

>pdb|2G2X|A Chain A, X-ray Crystal Structure Protein Q88ch6 From Pseudomonas Putida. Northeast Structural Genomics Consortium Target Ppr72. Length = 157

Iteration: 1
 Score = 47.0 bits (110), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 23/50 (46%), Positives = 31/50 (62%), Gaps = 1/50 (2%)
Query: 7  YWLLKTEPGEWSWEDQAANGGVTKWDGVKNKQAQKNMKAMRLNELCFFYH 56
          YWL K+EP E S E   A  G  +WDGV+N QA+  ++A  + +  FFYH
Sbjct: 3  YWLXKSEPDELSIE-ALARLGEARWDGVRNYQARNFLRAXSVGDEFFFYH 51

>pdb|2EVE|A Chain A, X-Ray Crystal Structure Of Protein Pspto5229 From Pseudomona Syringae. Northeast Structural Genomics Consortium Target P Length = 157

Iteration: 1
 Score = 42.0 bits (97), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 21/50 (42%), Positives = 29/50 (58%), Gaps = 1/50 (2%)
Query: 7  YWLLKTEPGEWSWEDQAANGGVTKWDGVKNKQAQKNMKAMRLNELCFFYH 56
          YWL K+EP E+S  D     G  +WDGV+N QA+  ++     +  FFYH
Sbjct: 3  YWLXKSEPDEFSISD-LQRLGKARWDGVRNYQARNFLRTXAEGDEFFFYH 51

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	154
1zce_A	155	Hypothetical protein ATU2648; alpha-beta protein.,	9e-46
2gbs_A	145	Hypothetical protein RPA0253; alpha-beta, RPR3, NE	1e-44
2ar1_A	172	Hypothetical protein; structural genomics, PSI, pr	7e-43
2eve_A	157	Hypothetical protein pspto5229; alpha-beta protein	1e-38
3eop_A	176	Thymocyte nuclear protein 1; unknown function, nuc	2e-36

>1zce_A Hypothetical protein ATU2648; alpha-beta protein., structural genomics, PSI, protein struc initiative; 1.30A {Agrobacterium tumefaciens str} SCOP: b.122.1.8 Length = 155

 Score =  145 bits (368), Expect = 9e-46
 Identities = 53/137 (38%), Positives = 78/137 (56%), Gaps = 4/137 (2%)

Query: 6   QYWLLKTEPGEWSWEDQAANGG-VTKWDGVKNKQAQKNMKAMRLNELCFFYHSGARSRRV 64
            YWL K+EP +WSWE Q A G    +W GV+N QA+ NM+AM++ +  FFYHS      V
Sbjct: 3   NYWLYKSEPFKWSWEMQKAKGETGEEWTGVRNYQARNNMRAMKIGDKGFFYHSNEG-LDV 61

Query: 65  VGVVSVLREWYEESGDGAGA--GAVDVKEVGMMRRAVDLKEMKRDQELKGWALFRQPRLS 122
           VG+V V    + +S          VD++ V  M + V LK++K + +L+  +L    RLS
Sbjct: 62  VGIVEVCALSHPDSTAEGDLKWDCVDIRAVCDMPQPVSLKDVKANPKLEKMSLVTSMRLS 121

Query: 123 VVNVEKKVWDRVCDLGG 139
           V  V ++ +  VC +GG
Sbjct: 122 VQPVTEEEYLEVCRMGG 138

>2gbs_A Hypothetical protein RPA0253; alpha-beta, RPR3, NESG, structural genomics, COG294 protein structure initiative; NMR {Rhodopseudomonas palustris} SCOP: b.122.1.8 Length = 145

 Score =  142 bits (359), Expect = 1e-44
 Identities = 45/139 (32%), Positives = 66/139 (47%), Gaps = 1/139 (0%)

Query: 6   QYWLLKTEPGEWSWEDQAANGG-VTKWDGVKNKQAQKNMKAMRLNELCFFYHSGARSRRV 64
            YWL+K+EP  WSW+ Q A G     W GV+N  A+ +M AMR  +  F+YHS      V
Sbjct: 2   AYWLVKSEPSVWSWDQQVAKGAAGEAWTGVRNHSAKLHMVAMRRGDRAFYYHSNEGKEIV 61

Query: 65  VGVVSVLREWYEESGDGAGAGAVDVKEVGMMRRAVDLKEMKRDQELKGWALFRQPRLSVV 124
                +   + + +        VD+K    ++  V L  +K +  L   AL +  RLSV 
Sbjct: 62  GIAEIIREAYPDPTDASGKFVCVDIKADKPLKTPVTLAAVKAEPRLADMALMKYSRLSVQ 121

Query: 125 NVEKKVWDRVCDLGGGFDG 143
            V  + W  VC +GG  + 
Sbjct: 122 PVTAEEWKLVCKMGGLLEH 140

>2ar1_A Hypothetical protein; structural genomics, PSI, protein structure initiative, STRU genomics of pathogenic protozoa consortium, SGPP, unknown F; 1.60A {Leishmania major} SCOP: b.122.1.8 Length = 172

 Score =  138 bits (350), Expect = 7e-43
 Identities = 48/153 (31%), Positives = 72/153 (47%), Gaps = 16/153 (10%)

Query: 2   GKERQYWLLKTEPGEWSWEDQAANGGVTKWDGVKNKQAQKNMKAMRLNELCFFYHSGARS 61
            ++  YWLLK+EP ++S +D A     + WDGV+N  A+ NM+AM + +   FYHS  + 
Sbjct: 16  AEDIHYWLLKSEPHKFSIDDLAKQKT-SPWDGVRNYAARNNMRAMSVGDKVLFYHSNTKE 74

Query: 62  RRVVGVVSVLREWYEESGDGAGA---------------GAVDVKEVGMMRRAVDLKEMKR 106
             V G+  V+R  Y++                        VDVK V      + L E+K 
Sbjct: 75  PGVAGLAEVVRLAYDDFTALDKTSEYFDPKATKEKNPWKMVDVKFVARWDTVLTLHELKS 134

Query: 107 DQELKGWALFRQPRLSVVNVEKKVWDRVCDLGG 139
            +EL+  ALF Q RLSV  V    +  +  +  
Sbjct: 135 RRELQKMALFTQRRLSVQPVSASEYAYILRMNE 167

>2eve_A Hypothetical protein pspto5229; alpha-beta protein, structural genomics, PSI, protein struct initiative; HET: MPO; 1.60A {Pseudomonas syringae PV} SCOP: b.122.1.8 PDB: 2g2x_A Length = 157

 Score =  127 bits (321), Expect = 1e-38
 Identities = 39/149 (26%), Positives = 69/149 (46%), Gaps = 17/149 (11%)

Query: 6   QYWLLKTEPGEWSWEDQAANGGVTKWDGVKNKQAQKNMKAMRLNELCFFYHSGARSRRVV 65
            YWL+K+EP E+S  D    G   +WDGV+N QA+  ++ M   +  FFYHS      + 
Sbjct: 2   AYWLMKSEPDEFSISDLQRLG-KARWDGVRNYQARNFLRTMAEGDEFFFYHSSCPEPGIA 60

Query: 66  GVVSVLREWY---------------EESGDGAGAGAVDVKEVGMMRRAVDLKEMKRDQEL 110
           G+  +++  Y               + + +     A+D+  V + +  + L  +K+  +L
Sbjct: 61  GIGKIVKTAYPDPTALDPDSHYHDAKATTEKNPWSALDIGFVDIFKNVLGLGYLKQQSQL 120

Query: 111 KGWALF-RQPRLSVVNVEKKVWDRVCDLG 138
           +   L  +  RLSV+ V  + W  +  L 
Sbjct: 121 EQLPLVQKGSRLSVMPVTAEQWAAILALR 149

>3eop_A Thymocyte nuclear protein 1; unknown function, nucleus, phosphoprotein; 2.30A {Homo sapiens} Length = 176

 Score =  122 bits (308), Expect = 2e-36
 Identities = 50/167 (29%), Positives = 78/167 (46%), Gaps = 33/167 (19%)

Query: 6   QYWLLKTEP---------GEWSWEDQAANGG-VTKWDGVKNKQAQKNMKAMRLNELCFFY 55
            +WL+K+EP          ++S ED  A     T WDGV+N QA+  ++AM+L E  FFY
Sbjct: 2   SHWLMKSEPESRLEKGVDVKFSIEDLKAQPKQTTCWDGVRNYQARNFLRAMKLGEEAFFY 61

Query: 56  HSGARSRRVVGVVSVLREWYE---------------ESGDGAGAGAVDVKEVGMMRRAVD 100
           HS  +   + G++ +++E Y                   D      VDV+ V MM+R + 
Sbjct: 62  HSNCKEPGIAGLMKIVKEAYPDHTQFEKNNPHYDPSSKEDNPKWSMVDVQFVRMMKRFIP 121

Query: 101 LKEMKRDQE--------LKGWALFRQPRLSVVNVEKKVWDRVCDLGG 139
           L E+K   +        LK   LF + RLS+  + ++ +D V  L  
Sbjct: 122 LAELKSYHQAHKATGGPLKNMVLFTRQRLSIQPLTQEEFDFVLSLEE 168

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	154
2eve_A	157	Hypothetical protein pspto5229; alpha-beta protein	100.0
3eop_A	176	Thymocyte nuclear protein 1; unknown function, nuc	100.0
2gbs_A	145	Hypothetical protein RPA0253; alpha-beta, RPR3, NE	100.0
1zce_A	155	Hypothetical protein ATU2648; alpha-beta protein.,	100.0
2ar1_A	172	Hypothetical protein; structural genomics, PSI, pr	100.0
2p5d_A	147	UPF0310 protein mjecl36; NPPSFA, national project	100.0
2hd9_A	145	UPF0310 protein PH1033; pyrococcus horikoshii OT3,	100.0
2kku_A	161	Uncharacterized protein; alpha/beta protein, struc	96.57
2yud_A	180	YTH domain-containing protein 1; structure genomic	85.1
2yu6_A	141	YTH domain-containing protein 2; structural genomi	83.22

>2eve_A Hypothetical protein pspto5229; alpha-beta protein, structural genomics, PSI, protein struct initiative; HET: MPO; 1.60A {Pseudomonas syringae PV} SCOP: b.122.1.8 PDB: 2g2x_A

Probab=100.00  E-value=2.7e-70  Score=428.59  Aligned_cols=134  Identities=29%  Similarity=0.543  Sum_probs=128.5

Q ss_pred             ceeEEeecCCCceehhcchhcCCceeecccccHHHHHHHHhccCCCEEEEEEeCCCCCeEEEEEEEeeecccCCCC----
Q 039512            5 RQYWLLKTEPGEWSWEDQAANGGVTKWDGVKNKQAQKNMKAMRLNELCFFYHSGARSRRVVGVVSVLREWYEESGD----   80 (154)
Q Consensus         5 m~YWLlKsEP~~fsiddl~~~~~~~~WdGVRNyqArn~lr~Mk~GD~~~fYHS~~~~~gIvGiaeVv~~aypD~t~----   80 (154)
                      |+||||||||++||||||.+ ++++.||||||||||||||+||+||+||||||||++|||||||+|++++|||||+    
T Consensus         1 M~YWL~KsEP~~~Siddl~~-~~~~~WdGVRNyqArN~mr~Mk~GD~~ffYHS~c~~pgIvGi~eVv~e~ypD~t~fdp~   79 (157)
T 2eve_A            1 MAYWLMKSEPDEFSISDLQR-LGKARWDGVRNYQARNFLRTMAEGDEFFFYHSSCPEPGIAGIGKIVKTAYPDPTALDPD   79 (157)
T ss_dssp             -CEEEEEECTTTSCHHHHHH-HSEEEECCCCCHHHHHHHHHCCTTCEEEEEECSSSSCEEEEEEEEEEEEEECGGGGCTT
T ss_pred             CceeeEecCCCeeeHHHHhc-CCcEecCCcccHHHHHHHHhcCCCCEEEEEecCCCCCEEEEEEEEeEccCCCccccccc
Confidence            78999999999999999998 4789999999999999999999999999999999999999999999999999983    


Q ss_pred             -----------CCCeeEEEEEEeeeeCCccChhhHhcCccccCceeccc-CCCcceecCHHHHHHHHHhcC
Q 039512           81 -----------GAGAGAVDVKEVGMMRRAVDLKEMKRDQELKGWALFRQ-PRLSVVNVEKKVWDRVCDLGG  139 (154)
Q Consensus        81 -----------~prw~~Vdv~~~~~l~~pv~L~~Lk~~p~L~~m~llr~-~RLSV~pVt~eew~~I~~l~~  139 (154)
                                 +|||++|||+|+++|++||||++||++|+|++|.|||+ +||||+|||++||++|++|+-
T Consensus        80 s~YyDpks~~~~prw~~VdV~~v~~~~~pv~L~elK~~~~L~~m~Lv~~g~RLSV~PVt~~ew~~I~~l~~  150 (157)
T 2eve_A           80 SHYHDAKATTEKNPWSALDIGFVDIFKNVLGLGYLKQQSQLEQLPLVQKGSRLSVMPVTAEQWAAILALRL  150 (157)
T ss_dssp             STTCCTTCCSSCCCCEEEEEEEEEEEEEEEEHHHHHTCGGGTTCGGGSTTCCCSEEEECHHHHHHHHHHHC
T ss_pred             CcCcCcccCCCCCCEEEEEEEEeeecCCccCHHHHhcCcccccCceeeccCCcCceecCHHHHHHHHHHhh
Confidence                       67899999999999999999999999999999999999 799999999999999999873

>3eop_A Thymocyte nuclear protein 1; unknown function, nucleus, phosphoprotein; 2.30A {Homo sapiens} SCOP: b.122.1.0

Probab=100.00  E-value=3.4e-70  Score=433.87  Aligned_cols=135  Identities=36%  Similarity=0.596  Sum_probs=128.0

Q ss_pred             ceeEEeecCCCc---------eehhcchhc-CCceeecccccHHHHHHHHhccCCCEEEEEEeCCCCCeEEEEEEEeeec
Q 039512            5 RQYWLLKTEPGE---------WSWEDQAAN-GGVTKWDGVKNKQAQKNMKAMRLNELCFFYHSGARSRRVVGVVSVLREW   74 (154)
Q Consensus         5 m~YWLlKsEP~~---------fsiddl~~~-~~~~~WdGVRNyqArn~lr~Mk~GD~~~fYHS~~~~~gIvGiaeVv~~a   74 (154)
                      |+||||||||++         ||||||.+. +++++||||||||||||||+||+||+||||||||++|||||||+||+++
T Consensus         1 m~yWLmKSEP~~r~e~g~dv~fSidDl~~~~~~~~~WdGVRNyqARN~mR~Mk~GD~~fFYHSnck~pgIvGi~eVv~e~   80 (176)
T 3eop_A            1 MSHWLMKSEPESRLEKGVDVKFSIEDLKAQPKQTTCWDGVRNYQARNFLRAMKLGEEAFFYHSNCKEPGIAGLMKIVKEA   80 (176)
T ss_dssp             -CEEEEEEBSSCCBSSSSBCBCCSHHHHTSGGGEEECCCCCCHHHHHHHHHCCTTCEEEEEECCSSSCEEEEEEEEEEEE
T ss_pred             CceeeeeeCCCcccccCccceEeHHHHHhccCCCCcccCcccHHHHHHHHhcCCCCEEEEEecCCCCCeEEEEEEEeecc
Confidence            789999999995         999999874 4578999999999999999999999999999999999999999999999


Q ss_pred             ccCCCC---------------CCCeeEEEEEEeeeeCCccChhhHhcCc--------cccCceecccCCCcceecCHHHH
Q 039512           75 YEESGD---------------GAGAGAVDVKEVGMMRRAVDLKEMKRDQ--------ELKGWALFRQPRLSVVNVEKKVW  131 (154)
Q Consensus        75 ypD~t~---------------~prw~~Vdv~~~~~l~~pv~L~~Lk~~p--------~L~~m~llr~~RLSV~pVt~eew  131 (154)
                      |||||+               +|||++|||+|+++|++||||++||++|        .|++|.|||++||||+|||++||
T Consensus        81 ypD~T~fDp~s~YyDpkS~~~~prW~~VdV~~v~~~~~~vtL~eLK~~~~~~~~~~~~L~~m~Lvr~~RLSV~PVt~~ew  160 (176)
T 3eop_A           81 YPDHTQFEKNNPHYDPSSKEDNPKWSMVDVQFVRMMKRFIPLAELKSYHQAHKATGGPLKNMVLFTRQRLSIQPLTQEEF  160 (176)
T ss_dssp             EECGGGTCTTSTTCCTTCCTTSCSCEEEEEEEEEEEEEEEEHHHHHHHHHHHHHHTCTTSSCHHHHCTTCSEEEECHHHH
T ss_pred             ccCCcccCCCCCCCCccCcCCCCCEEEEEEEEeeecCCcccHHHHhcCcccccccccccccCceeccCccCceecCHHHH
Confidence            999983               6899999999999999999999999997        99999999999999999999999


Q ss_pred             HHHHHhcC
Q 039512          132 DRVCDLGG  139 (154)
Q Consensus       132 ~~I~~l~~  139 (154)
                      ++|++|+.
T Consensus       161 ~~I~~l~~  168 (176)
T 3eop_A          161 DFVLSLEE  168 (176)
T ss_dssp             HHHHHGGG
T ss_pred             HHHHHHHh
Confidence            99999984

>2gbs_A Hypothetical protein RPA0253; alpha-beta, RPR3, NESG, structural genomics, COG294 protein structure initiative; NMR {Rhodopseudomonas palustris} SCOP: b.122.1.8

Probab=100.00  E-value=2e-69  Score=419.38  Aligned_cols=134  Identities=37%  Similarity=0.736  Sum_probs=129.8

Q ss_pred             ceeEEeecCCCceehhcchhcCCc--eeecccccHHHHHHHHhccCCCEEEEEEeCCCCCeEEEEEEEeeecccCCCC-C
Q 039512            5 RQYWLLKTEPGEWSWEDQAANGGV--TKWDGVKNKQAQKNMKAMRLNELCFFYHSGARSRRVVGVVSVLREWYEESGD-G   81 (154)
Q Consensus         5 m~YWLlKsEP~~fsiddl~~~~~~--~~WdGVRNyqArn~lr~Mk~GD~~~fYHS~~~~~gIvGiaeVv~~aypD~t~-~   81 (154)
                      |+||||||||+.||||||.+. ++  +.||||||||||||||+||+||+||||||| ++|||||||+|++++|||||+ +
T Consensus         1 M~YWL~KsEP~~~Siddl~~~-~~~~~~WdGVRNyqArn~mr~Mk~GD~~ffYHS~-~~~gIvGi~eVv~e~ypD~t~~~   78 (145)
T 2gbs_A            1 VAYWLVKSEPSVWSWDQQVAK-GAAGEAWTGVRNHSAKLHMVAMRRGDRAFYYHSN-EGKEIVGIAEIIREAYPDPTDAS   78 (145)
T ss_dssp             CCEEEEEECTTTSCHHHHHTT-TTTCEECCCCCCHHHHHHHHHCCTTCEEEEEETT-TTCEEEEEEEEEEEEEECTTCTT
T ss_pred             CceEEEEcCCCcCCHHHHHhc-CcccceeCCcccHHHHHHHHhcCCCCEEEEEEeC-CCCceEEEEEEEEeccCCCCCCC
Confidence            789999999999999999984 54  899999999999999999999999999999 899999999999999999998 8


Q ss_pred             CCeeEEEEEEeeeeCCccChhhHhcCccccCceecccCCCcceecCHHHHHHHHHhcCC
Q 039512           82 AGAGAVDVKEVGMMRRAVDLKEMKRDQELKGWALFRQPRLSVVNVEKKVWDRVCDLGGG  140 (154)
Q Consensus        82 prw~~Vdv~~~~~l~~pv~L~~Lk~~p~L~~m~llr~~RLSV~pVt~eew~~I~~l~~~  140 (154)
                      |||++|||+|+++|++||||++||++|+|++|.|||++||||+|||++||++|++|++.
T Consensus        79 prw~~VdV~~v~~~~~pvtL~elK~~~~L~~m~lvr~~RLSV~pVt~~ew~~I~~l~~~  137 (145)
T 2gbs_A           79 GKFVCVDIKADKPLKTPVTLAAVKAEPRLADMALMKYSRLSVQPVTAEEWKLVCKMGGL  137 (145)
T ss_dssp             SCSEEEEEEEEEEEEEEEEHHHHHHCTTGGGSHHHHCTTCSSEEECHHHHHHHHHHTTC
T ss_pred             CCEEEEEEEEceecCCcccHHHHhcCcCcccCeeeeccCCCceeeCHHHHHHHHHhhcc
Confidence            99999999999999999999999999999999999999999999999999999999964

>1zce_A Hypothetical protein ATU2648; alpha-beta protein., structural genomics, PSI, protein struc initiative; 1.30A {Agrobacterium tumefaciens str} SCOP: b.122.1.8

Probab=100.00  E-value=1.8e-68  Score=417.76  Aligned_cols=134  Identities=40%  Similarity=0.666  Sum_probs=129.0

Q ss_pred             CceeEEeecCCCceehhcchhcCCc--eeecccccHHHHHHHHhccCCCEEEEEEeCCCCCeEEEEEEEeeecccCCCC-
Q 039512            4 ERQYWLLKTEPGEWSWEDQAANGGV--TKWDGVKNKQAQKNMKAMRLNELCFFYHSGARSRRVVGVVSVLREWYEESGD-   80 (154)
Q Consensus         4 ~m~YWLlKsEP~~fsiddl~~~~~~--~~WdGVRNyqArn~lr~Mk~GD~~~fYHS~~~~~gIvGiaeVv~~aypD~t~-   80 (154)
                      .|+||||||||+.||||||.+. ++  +.||||||||||||||+||+||+||||||| ++|||||||||++++|||||+ 
T Consensus         1 mM~YWL~KSEP~~~Siddl~~~-~~~~~~WdGVRNyqArN~mr~Mk~GD~~fFYHS~-~~~gIvGi~eVv~e~ypD~t~~   78 (155)
T 1zce_A            1 MANYWLYKSEPFKWSWEMQKAK-GETGEEWTGVRNYQARNNMRAMKIGDKGFFYHSN-EGLDVVGIVEVCALSHPDSTAE   78 (155)
T ss_dssp             -CCEEEEEECTTTSCHHHHHHH-GGGCEECCCCCCHHHHHHHHTCCTTCEEEEEETT-TTCEEEEEEEEEEEEEECTTST
T ss_pred             CcceEEEEcCCCcCCHHHHHhc-CcccceecCcccHHHHHHHHhccCCCEEEEEEeC-CCCceEEEEEEeeeccCCCCcC
Confidence            3899999999999999999884 44  899999999999999999999999999999 899999999999999999997 


Q ss_pred             -CCCeeEEEEEEeeeeCCccChhhHhcCccccCceecccCCCcceecCHHHHHHHHHhcC
Q 039512           81 -GAGAGAVDVKEVGMMRRAVDLKEMKRDQELKGWALFRQPRLSVVNVEKKVWDRVCDLGG  139 (154)
Q Consensus        81 -~prw~~Vdv~~~~~l~~pv~L~~Lk~~p~L~~m~llr~~RLSV~pVt~eew~~I~~l~~  139 (154)
                       +|||++|||+|+++|++||||++||++|+|++|.|||++||||+|||++||++|++|++
T Consensus        79 d~Prw~~VdV~~v~~~~~pvtL~eLK~~~~L~~m~Lvr~~RLSV~PVt~~ew~~I~~l~~  138 (155)
T 1zce_A           79 GDLKWDCVDIRAVCDMPQPVSLKDVKANPKLEKMSLVTSMRLSVQPVTEEEYLEVCRMGG  138 (155)
T ss_dssp             TCSSCEEEEEEEEEEEEEEEEHHHHHHCGGGTTCHHHHCSSCSEEEECHHHHHHHHHHTT
T ss_pred             CCCCeEEEEEEEccccCCcccHHHHhcCCCcccCeeeeccCCCceeeCHHHHHHHHHhhC
Confidence             67999999999999999999999999999999999999999999999999999999996

>2ar1_A Hypothetical protein; structural genomics, PSI, protein structure initiative, STRU genomics of pathogenic protozoa consortium, SGPP, unknown F; 1.60A {Leishmania major} SCOP: b.122.1.8

Probab=100.00  E-value=1.2e-68  Score=424.53  Aligned_cols=136  Identities=35%  Similarity=0.564  Sum_probs=130.8

Q ss_pred             CCceeEEeecCCCceehhcchhcCCceeecccccHHHHHHHHhccCCCEEEEEEeCCCCCeEEEEEEEeeecccCCCC--
Q 039512            3 KERQYWLLKTEPGEWSWEDQAANGGVTKWDGVKNKQAQKNMKAMRLNELCFFYHSGARSRRVVGVVSVLREWYEESGD--   80 (154)
Q Consensus         3 ~~m~YWLlKsEP~~fsiddl~~~~~~~~WdGVRNyqArn~lr~Mk~GD~~~fYHS~~~~~gIvGiaeVv~~aypD~t~--   80 (154)
                      ..|+||||||||++||||||.+ ++++.||||||||||||||+||+||+||||||||++|||||||+|++++|||||+  
T Consensus        17 ~~M~YWL~KSEP~~~Siddl~~-~~~~~WdGVRNyqARN~mr~Mk~GD~vfFYHS~c~~pgIvGi~eVv~e~ypD~t~fd   95 (172)
T 2ar1_A           17 EDIHYWLLKSEPHKFSIDDLAK-QKTSPWDGVRNYAARNNMRAMSVGDKVLFYHSNTKEPGVAGLAEVVRLAYDDFTALD   95 (172)
T ss_dssp             TSCCEEEEEECTTTSCHHHHHH-HSEEECCCCCCHHHHHHHHHCCTTCEEEEEECSSSSCEEEEEEEEEEEEEECGGGGC
T ss_pred             CccceEEEEcCCCccCHHHHHh-cCceeccCcCcHHHHHHHHhcCCCCEEEEEecCCCCCEEEEEEEEeeeccCCccccc
Confidence            3699999999999999999998 4779999999999999999999999999999999999999999999999999983  


Q ss_pred             -------------CCCeeEEEEEEeeeeCCccChhhHhcCccccCceecccCCCcceecCHHHHHHHHHhcC
Q 039512           81 -------------GAGAGAVDVKEVGMMRRAVDLKEMKRDQELKGWALFRQPRLSVVNVEKKVWDRVCDLGG  139 (154)
Q Consensus        81 -------------~prw~~Vdv~~~~~l~~pv~L~~Lk~~p~L~~m~llr~~RLSV~pVt~eew~~I~~l~~  139 (154)
                                   +|||++|||+|+++|++||||++||++|+|++|.|||++||||+|||++||++|++|++
T Consensus        96 p~s~YyDpks~~~~prw~~VdV~~v~~~~~pvtL~eLK~~~~L~~m~Lvr~~RLSV~PVt~~ew~~I~~l~~  167 (172)
T 2ar1_A           96 KTSEYFDPKATKEKNPWKMVDVKFVARWDTVLTLHELKSRRELQKMALFTQRRLSVQPVSASEYAYILRMNE  167 (172)
T ss_dssp             TTSTTCCTTCCSSCCCCEEEEEEEEEEEEEEEEHHHHTTCGGGTTCHHHHCSSCSEEEECHHHHHHHHHHHH
T ss_pred             ccCcccCcccCCCCCCeEEEEEEEeeecCCcccHHHHhcCcccccCeeeeccCCCceecCHHHHHHHHHhhh
Confidence                         57899999999999999999999999999999999999999999999999999999983

>2p5d_A UPF0310 protein mjecl36; NPPSFA, national project on protein structural and functional analyses; 1.70A {Methanocaldococcus jannaschii}

Probab=100.00  E-value=1.7e-45  Score=284.24  Aligned_cols=123  Identities=18%  Similarity=0.391  Sum_probs=112.3

Q ss_pred             CceeEEeecCCCceehhcchhcCCceeecccccHHHHHHHHhccCCCEEEEE-----EeCCCCCeEEEEEEEeeecccCC
Q 039512            4 ERQYWLLKTEPGEWSWEDQAANGGVTKWDGVKNKQAQKNMKAMRLNELCFFY-----HSGARSRRVVGVVSVLREWYEES   78 (154)
Q Consensus         4 ~m~YWLlKsEP~~fsiddl~~~~~~~~WdGVRNyqArn~lr~Mk~GD~~~fY-----HS~~~~~gIvGiaeVv~~aypD~   78 (154)
                      .|+|||+||||+.  |+++.+. +  .| || ||||||+||+||+||++|||     ||||+.++||||++|++++|||+
T Consensus         3 ~m~YWL~~se~~~--~~~~~~~-g--~w-GV-n~~arn~lr~Mk~GD~~~fY~~~~~hs~~~~~~ivGi~eV~~e~y~D~   75 (147)
T 2p5d_A            3 LMAYWLCITNEDN--WKVIKEK-K--IW-GV-AERYKNTINKVKVGDKLIIYEIQRSGKDYKPPYIRGVYEVVSEVYKDS   75 (147)
T ss_dssp             CCCEEEEEECHHH--HHHHHHH-C--EE-EE-CGGGHHHHTTCCTTCEEEEEECCBCSTTCBCCEEEEEEEECSCCEECC
T ss_pred             cccceeeecCHHH--HHHHHHc-C--ee-ec-CHHHHHHHHhCCCCCEEEEEEecccCCCCCCCEEEEEEEEecccccCC
Confidence            4899999999999  5556553 3  67 99 99999999999999999999     99999999999999999999999


Q ss_pred             CC----------CCCeeEEEEEEeeeeCCccChhhHh-------cCccccCceecccCCCcceecCHHHHHHHHHh
Q 039512           79 GD----------GAGAGAVDVKEVGMMRRAVDLKEMK-------RDQELKGWALFRQPRLSVVNVEKKVWDRVCDL  137 (154)
Q Consensus        79 t~----------~prw~~Vdv~~~~~l~~pv~L~~Lk-------~~p~L~~m~llr~~RLSV~pVt~eew~~I~~l  137 (154)
                      |+          +|+|++|||+++++|++||||++||       +.+.|++ .|+|++   |+|||+++|++|+++
T Consensus        76 t~~dp~~~y~~~~~~w~~VdV~~v~~~~~~v~L~~Lk~~L~fi~~~~~~~~-~L~r~g---v~pV~~~~~~~I~~~  147 (147)
T 2p5d_A           76 SKIFKPTPRNPNEKFPYRVKLKEIKVFEPPINFKELIPKLKFITNKKRWSG-HLMGKA---MREIPEEDYKLIVGN  147 (147)
T ss_dssp             CCCSCCBTTBTTCCCCEEEEEEEEEEEEEEEEHHHHGGGCTTCCCSSSCCC---CCCS---EEEECHHHHHHHHTC
T ss_pred             cccCcCccCcCCCCCceEEEEEEEeecCCccCHHHHHhhhhhcccchhhHH-HHhcCC---ceECCHHHHHHHHhC
Confidence            85          6799999999999999999999999       8899999 889988   999999999999864

>2hd9_A UPF0310 protein PH1033; pyrococcus horikoshii OT3, structural genomics, NPPSFA, NATI project on protein structural and functional analyses; HET: CIT; 1.35A {Pyrococcus horikoshii} SCOP: b.122.1.8 PDB: 1wmm_A* 2zbn_A

Probab=100.00  E-value=2.7e-40  Score=254.67  Aligned_cols=119  Identities=15%  Similarity=0.274  Sum_probs=101.6

Q ss_pred             ceeEEeecCCCceehhcchhcCCceeecccccHHHHHHHHhccCCCEEEEEEeCC-------CCCeEEEEEEEeeecccC
Q 039512            5 RQYWLLKTEPGEWSWEDQAANGGVTKWDGVKNKQAQKNMKAMRLNELCFFYHSGA-------RSRRVVGVVSVLREWYEE   77 (154)
Q Consensus         5 m~YWLlKsEP~~fsiddl~~~~~~~~WdGVRNyqArn~lr~Mk~GD~~~fYHS~~-------~~~gIvGiaeVv~~aypD   77 (154)
                      |+|||+||+|+.|  ++..+    ..|.|| ||||||+||+||+||++|||||||       +.++||||++|++++|||
T Consensus         1 M~YWL~kss~d~~--~~~~~----~g~~GV-n~~arn~lr~mk~GD~~~fYhs~~~~~~~~~~~~~ivGi~eV~~e~y~D   73 (145)
T 2hd9_A            1 MTYWICITNRENW--EVIKR----HNVWGV-PKKHKNTLSRVKPGDKLVIYVRQEKDKEGNLLEPKIVGIYEVTSEPYVD   73 (145)
T ss_dssp             CCEEEEEECHHHH--HHHHH----HCEEEE-CGGGHHHHTTCCTTCEEEEEECCEECTTCCEECCEEEEEEEECSCCEEC
T ss_pred             CceEEEeCCHHHH--HHHHH----cCcccc-CHHHHHHHHhCCCCCEEEEEEccccccCCCCCCceEEEEEEEcCCcEeC
Confidence            7899999977765  33222    336699 999999999999999999999998       679999999999999999


Q ss_pred             CCC---------CCCeeEEEEEEeeeeCCccChhhHhcCccccCceeccc--------CCCcceecCHHHHHHHHHh
Q 039512           78 SGD---------GAGAGAVDVKEVGMMRRAVDLKEMKRDQELKGWALFRQ--------PRLSVVNVEKKVWDRVCDL  137 (154)
Q Consensus        78 ~t~---------~prw~~Vdv~~~~~l~~pv~L~~Lk~~p~L~~m~llr~--------~RLSV~pVt~eew~~I~~l  137 (154)
                      +|+         +++|++|+|+++..  ++|++++|++     +|.++++        .|+||+|||+++|+.|++.
T Consensus        74 ~t~~~~~~~~~~~~~p~rv~v~~v~~--~~i~~~~l~~-----~l~fi~~k~~w~~~l~r~gv~pV~~~d~~~I~~~  143 (145)
T 2hd9_A           74 FSRIFKPHRGGKETYPYRVKIKPIKI--GEINFKPLIN-----DLKFIKNKKRWSMHFFGKAMRELPEEDYKLIEKL  143 (145)
T ss_dssp             CCCCSCCTTSSCCCCCEEEEEEEEEE--EEEESGGGGG-----GCTTCCCSTTGGGGTTTCSEEEECHHHHHHHHHH
T ss_pred             CCccCCCcccccCCeeEEEeCEEEee--ccCcHHHHHh-----hhhhhcccccccceecccCceEcCHHHHHHHHHh
Confidence            985         35899999999976  7899988884     5666665        6889999999999999864

>2kku_A Uncharacterized protein; alpha/beta protein, structural genomics, PSI-2, protein STRU initiative; NMR {Archaeoglobus fulgidus}

Probab=96.57  E-value=0.0012  Score=51.57  Aligned_cols=58  Identities=16%  Similarity=0.216  Sum_probs=47.3

Q ss_pred             HHH-hccCCCEEEEEEeCCCCCeEEEEEEEeeecc-cCCCC----------------------CCC------------ee
Q 039512           42 NMK-AMRLNELCFFYHSGARSRRVVGVVSVLREWY-EESGD----------------------GAG------------AG   85 (154)
Q Consensus        42 ~lr-~Mk~GD~~~fYHS~~~~~gIvGiaeVv~~ay-pD~t~----------------------~pr------------w~   85 (154)
                      .++ .+++||.|+||.|. +..+|||.++|-+--. .+|.+                      ..+            |+
T Consensus        54 ~v~~~l~~Gd~vviYaS~-P~~~iVGea~I~~Ii~~~~P~~lWe~~~d~~gITkeef~~Yy~g~~~w~~~~~~~~~~~~~  132 (161)
T 2kku_A           54 TVWKELKPGMKFVFYQSH-EDTGFVGEARIKRVVLSENPMQFFETFGDRVFLTKDELKEYMKSQERWGRRRESKKKKLWM  132 (161)
T ss_dssp             CSCTTCCTTEEEEECCCS-TTCBCCEEEEEEEEEEESCTHHHHHHTSTTBSSCHHHHHHHHHHHHHTSSCCCCSSCCCEE
T ss_pred             CcccccCCCCEEEEEEcC-CCcEEEEEEEEEEEEecCCHHHHHHHhCcccCcCHHHHHHHhcccccccccccccccccEE
Confidence            354 58999999999999 8999999999988763 45541                      013            99


Q ss_pred             EEEEEEeeeeCCccC
Q 039512           86 AVDVKEVGMMRRAVD  100 (154)
Q Consensus        86 ~Vdv~~~~~l~~pv~  100 (154)
                      ++.++-+++|++||.
T Consensus       133 aI~L~~Vrky~~pvk  147 (161)
T 2kku_A          133 AIELEDVKKYDKPIK  147 (161)
T ss_dssp             EEEEEEEEECCSCBC
T ss_pred             EEEecceEeCCCCCC
Confidence            999999999999987

>2yud_A YTH domain-containing protein 1; structure genomics, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=85.10  E-value=10  Score=29.53  Aligned_cols=128  Identities=13%  Similarity=0.139  Sum_probs=81.3

Q ss_pred             CceeEEeecCCCceehhcchhcCCceeecccccHHHHHHHHhccCCCEEEEEEeCCCCCeEEEEEEEeeecccCCCC---
Q 039512            4 ERQYWLLKTEPGEWSWEDQAANGGVTKWDGVKNKQAQKNMKAMRLNELCFFYHSGARSRRVVGVVSVLREWYEESGD---   80 (154)
Q Consensus         4 ~m~YWLlKsEP~~fsiddl~~~~~~~~WdGVRNyqArn~lr~Mk~GD~~~fYHS~~~~~gIvGiaeVv~~aypD~t~---   80 (154)
                      .-+|.++||    ++.+|+...-....|.--++ .-+.+-.+.+.++.|++.=|-.+.....|+|+.++..-++.+.   
T Consensus        25 ~arfFIIKS----~s~~ni~~Sik~gvWatt~~-n~~kL~~Af~~~~~V~L~FSVn~Sg~F~G~A~M~s~~~~~~~~~~W   99 (180)
T 2yud_A           25 DARFFLIKS----NNHENVSLAKAKGVWSTLPV-NEKKLNLAFRSARSVILIFSVRESGKFQGFARLSSESHHGGSPIHW   99 (180)
T ss_dssp             TCEEEEEEE----SCHHHHHHHHHHTEECCCHH-HHHHHHHHHHHSSCEEEEEEETTTSEEEEEEEEEEEEECSSCCCCC
T ss_pred             ceEEEEEEe----CCHHHHHHHHHcCEeecccc-cHHHHHHHHhhCCeEEEEEEeCCCCcEEEEEEEccCCCCCCCCccc
Confidence            457999998    57788765434578964442 2233444555555565555655789999999999986443221   


Q ss_pred             -------CCCe-eEEEEEEeeeeCCccChhhHhcCc-cccCceecccCCCcceecCHHHHHHHHHhcC
Q 039512           81 -------GAGA-GAVDVKEVGMMRRAVDLKEMKRDQ-ELKGWALFRQPRLSVVNVEKKVWDRVCDLGG  139 (154)
Q Consensus        81 -------~prw-~~Vdv~~~~~l~~pv~L~~Lk~~p-~L~~m~llr~~RLSV~pVt~eew~~I~~l~~  139 (154)
                             ..+| ....|+-+..  ..||...++..- .+-+...|+.+| --+.|.++.=..+|+|-.
T Consensus       100 ~~~~~~~~~~~~g~F~V~Wi~~--~dvPf~~~~hl~n~~NenkpV~~sR-DgqEI~~~~G~~L~~lf~  164 (180)
T 2yud_A          100 VLPAGMSAKMLGGVFKIDWICR--RELPFTKSAHLTNPWNEHKPVKIGR-DGQEIELECGTQLCLLFP  164 (180)
T ss_dssp             CCCSSCCGGGGCSEEEEEEEEC--SCEEHHHHTTCCBTTTTSBCTTSCC-TTEEECHHHHHHHHHHSC
T ss_pred             cccCccchhhcCCceEEEEEEe--ecCCchhhhhccccccCCCeeeeCC-CCEEcCHHHHHHHHHhcc
Confidence                   1124 4555666655  578888877542 243444455555 348888888888888764

>2yu6_A YTH domain-containing protein 2; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=83.22  E-value=5.3  Score=29.84  Aligned_cols=126  Identities=14%  Similarity=0.173  Sum_probs=72.0

Q ss_pred             CceeEEeecCCCceehhcchhcCCceeecccccHHHHHHHHhccCCCEEEEEEeCCCCCeEEEEEEEeeecccCCCC---
Q 039512            4 ERQYWLLKTEPGEWSWEDQAANGGVTKWDGVKNKQAQKNMKAMRLNELCFFYHSGARSRRVVGVVSVLREWYEESGD---   80 (154)
Q Consensus         4 ~m~YWLlKsEP~~fsiddl~~~~~~~~WdGVRNyqArn~lr~Mk~GD~~~fYHS~~~~~gIvGiaeVv~~aypD~t~---   80 (154)
                      .-+|.++||    ++.+|+...-....|.=.++-. +.+-.+-+.++.|++.=|-.+.....|+|+.++..-..++.   
T Consensus         7 ~~rfFIiKS----~s~~ni~~S~k~gvW~tt~~~~-~~L~~Af~~~~~V~L~FSvn~Sg~F~G~A~M~s~~~~~~~~~W~   81 (141)
T 2yu6_A            7 GVRYFIMKS----SNLRNLEISQQKGIWSTTPSNE-RKLNRAFWESSIVYLVFSVQGSGHFQGFSRMSSEIGREKSQDWG   81 (141)
T ss_dssp             CCEEEEEEE----SSSHHHHHHHHTCEEECCTTSH-HHHHHHHHHSSCEEEEEEESSSSEECEEEEECSCSSSCCCCCCS
T ss_pred             CcEEEEEEe----CCHHHHHHHHHcCEeeccCccH-HHHHHHHhcCCcEEEEEEECCCCeEEEEEEEcccCCCCCCcccc
Confidence            467999998    4667765543457896444322 33444555555666666654789999999999986332221   


Q ss_pred             CCCe-eEEEEEEeeeeCCccChhhHhcCc-cccCceecccCCCcceecCHHHHHHHHHh
Q 039512           81 GAGA-GAVDVKEVGMMRRAVDLKEMKRDQ-ELKGWALFRQPRLSVVNVEKKVWDRVCDL  137 (154)
Q Consensus        81 ~prw-~~Vdv~~~~~l~~pv~L~~Lk~~p-~L~~m~llr~~RLSV~pVt~eew~~I~~l  137 (154)
                      ..+| ....|+-+..  ..||...++..- .+-+...++.+|= -+.|.++.=..++++
T Consensus        82 ~~~~~g~F~V~Wi~~--~~vpf~~~~hl~n~~N~nk~V~~~RD-gqEi~~~~G~~l~~i  137 (141)
T 2yu6_A           82 SAGLGGVFKVEWIRK--ESLPFQFAHHLLNPWNDNKKVQISRD-GQELEPQVGEQLLQL  137 (141)
T ss_dssp             CSCCCCEEEEEEEEC--SCEEHHHHTSCEETTSTTEETTCCCT-TEEECTTHHHHHHGG
T ss_pred             ccccCCcEEEEEEEe--ecCChHHhhhcccccCCCCeEEeCCC-CEEcCHHHHHHHHHH
Confidence            2234 3445555554  678888887542 2333334444432 244554444444443

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	154
d2gbsa1	136	b.122.1.8 (A:2-137) Hypothetical protein RPA0253 {	2e-42
d1zcea1	146	b.122.1.8 (A:2-147) Hypothetical protein Atu2648 {	6e-42
d2ar1a1	157	b.122.1.8 (A:7-163) Hypothetical protein LmjF36.68	2e-40
d2evea1	148	b.122.1.8 (A:2-149) Hypothetical protein PSPTO5229	2e-38

>d2gbsa1 b.122.1.8 (A:2-137) Hypothetical protein RPA0253 {Rhodopseudomonas palustris [TaxId: 1076]} Length = 136

class: All beta proteins
fold: PUA domain-like
superfamily: PUA domain-like
family: Atu2648/PH1033-like
domain: Hypothetical protein RPA0253
species: Rhodopseudomonas palustris [TaxId: 1076]

 Score =  135 bits (341), Expect = 2e-42
 Identities = 45/134 (33%), Positives = 65/134 (48%), Gaps = 1/134 (0%)

Query: 7   YWLLKTEPGEWSWEDQAANG-GVTKWDGVKNKQAQKNMKAMRLNELCFFYHSGARSRRVV 65
           YWL+K+EP  WSW+ Q A G     W GV+N  A+ +M AMR  +  F+YHS      V 
Sbjct: 2   YWLVKSEPSVWSWDQQVAKGAAGEAWTGVRNHSAKLHMVAMRRGDRAFYYHSNEGKEIVG 61

Query: 66  GVVSVLREWYEESGDGAGAGAVDVKEVGMMRRAVDLKEMKRDQELKGWALFRQPRLSVVN 125
               +   + + +        VD+K    ++  V L  +K +  L   AL +  RLSV  
Sbjct: 62  IAEIIREAYPDPTDASGKFVCVDIKADKPLKTPVTLAAVKAEPRLADMALMKYSRLSVQP 121

Query: 126 VEKKVWDRVCDLGG 139
           V  + W  VC +GG
Sbjct: 122 VTAEEWKLVCKMGG 135

>d1zcea1 b.122.1.8 (A:2-147) Hypothetical protein Atu2648 {Agrobacterium tumefaciens [TaxId: 358]} Length = 146

class: All beta proteins
fold: PUA domain-like
superfamily: PUA domain-like
family: Atu2648/PH1033-like
domain: Hypothetical protein Atu2648
species: Agrobacterium tumefaciens [TaxId: 358]

 Score =  134 bits (339), Expect = 6e-42
 Identities = 49/135 (36%), Positives = 73/135 (54%), Gaps = 2/135 (1%)

Query: 7   YWLLKTEPGEWSWEDQAANG-GVTKWDGVKNKQAQKNMKAMRLNELCFFYHSGARSRRVV 65
           YWL K+EP +WSWE Q A G    +W GV+N QA+ NM+AM++ +  FFYHS      V 
Sbjct: 3   YWLYKSEPFKWSWEMQKAKGETGEEWTGVRNYQARNNMRAMKIGDKGFFYHSNEGLDVVG 62

Query: 66  GVVSVLREWYEESG-DGAGAGAVDVKEVGMMRRAVDLKEMKRDQELKGWALFRQPRLSVV 124
            V        + +         VD++ V  M + V LK++K + +L+  +L    RLSV 
Sbjct: 63  IVEVCALSHPDSTAEGDLKWDCVDIRAVCDMPQPVSLKDVKANPKLEKMSLVTSMRLSVQ 122

Query: 125 NVEKKVWDRVCDLGG 139
            V ++ +  VC +GG
Sbjct: 123 PVTEEEYLEVCRMGG 137

>d2ar1a1 b.122.1.8 (A:7-163) Hypothetical protein LmjF36.6870 {Leishmania major [TaxId: 5664]} Length = 157

class: All beta proteins
fold: PUA domain-like
superfamily: PUA domain-like
family: Atu2648/PH1033-like
domain: Hypothetical protein LmjF36.6870
species: Leishmania major [TaxId: 5664]

 Score =  130 bits (329), Expect = 2e-40
 Identities = 48/152 (31%), Positives = 72/152 (47%), Gaps = 16/152 (10%)

Query: 2   GKERQYWLLKTEPGEWSWEDQAANGGVTKWDGVKNKQAQKNMKAMRLNELCFFYHSGARS 61
            ++  YWLLK+EP ++S +D A     + WDGV+N  A+ NM+AM + +   FYHS  + 
Sbjct: 2   AEDIHYWLLKSEPHKFSIDDLAKQKT-SPWDGVRNYAARNNMRAMSVGDKVLFYHSNTKE 60

Query: 62  RRVVGVVSVLREWYEESGDGAGAG---------------AVDVKEVGMMRRAVDLKEMKR 106
             V G+  V+R  Y++                        VDVK V      + L E+K 
Sbjct: 61  PGVAGLAEVVRLAYDDFTALDKTSEYFDPKATKEKNPWKMVDVKFVARWDTVLTLHELKS 120

Query: 107 DQELKGWALFRQPRLSVVNVEKKVWDRVCDLG 138
            +EL+  ALF Q RLSV  V    +  +  + 
Sbjct: 121 RRELQKMALFTQRRLSVQPVSASEYAYILRMN 152

>d2evea1 b.122.1.8 (A:2-149) Hypothetical protein PSPTO5229 {Pseudomonas syringae [TaxId: 317]} Length = 148

class: All beta proteins
fold: PUA domain-like
superfamily: PUA domain-like
family: Atu2648/PH1033-like
domain: Hypothetical protein PSPTO5229
species: Pseudomonas syringae [TaxId: 317]

 Score =  126 bits (317), Expect = 2e-38
 Identities = 39/147 (26%), Positives = 67/147 (45%), Gaps = 17/147 (11%)

Query: 7   YWLLKTEPGEWSWEDQAANGGVTKWDGVKNKQAQKNMKAMRLNELCFFYHSGARSRRVVG 66
           YWL+K+EP E+S  D    G   +WDGV+N QA+  ++ M   +  FFYHS      + G
Sbjct: 2   YWLMKSEPDEFSISDLQRLG-KARWDGVRNYQARNFLRTMAEGDEFFFYHSSCPEPGIAG 60

Query: 67  VVSVLREWYEESGDGAGA---------------GAVDVKEVGMMRRAVDLKEMKRDQELK 111
           +  +++  Y +                       A+D+  V + +  + L  +K+  +L+
Sbjct: 61  IGKIVKTAYPDPTALDPDSHYHDAKATTEKNPWSALDIGFVDIFKNVLGLGYLKQQSQLE 120

Query: 112 GWALF-RQPRLSVVNVEKKVWDRVCDL 137
              L  +  RLSV+ V  + W  +  L
Sbjct: 121 QLPLVQKGSRLSVMPVTAEQWAAILAL 147

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	154
d2evea1	148	Hypothetical protein PSPTO5229 {Pseudomonas syring	100.0
d2gbsa1	136	Hypothetical protein RPA0253 {Rhodopseudomonas pal	100.0
d2ar1a1	157	Hypothetical protein LmjF36.6870 {Leishmania major	100.0
d1zcea1	146	Hypothetical protein Atu2648 {Agrobacterium tumefa	100.0
d2hd9a1	145	Hypothetical protein PH1033 {Pyrococcus horikoshii	99.08
d2evra2	148	Cell wall-associated hydrolase Spr C-terminal doma	82.12

>d2evea1 b.122.1.8 (A:2-149) Hypothetical protein PSPTO5229 {Pseudomonas syringae [TaxId: 317]}

class: All beta proteins
fold: PUA domain-like
superfamily: PUA domain-like
family: Atu2648/PH1033-like
domain: Hypothetical protein PSPTO5229
species: Pseudomonas syringae [TaxId: 317]

Probab=100.00  E-value=1.8e-69  Score=419.01  Aligned_cols=131  Identities=30%  Similarity=0.576  Sum_probs=125.8

Q ss_pred             eeEEeecCCCceehhcchhcCCceeecccccHHHHHHHHhccCCCEEEEEEeCCCCCeEEEEEEEeeecccCCCC-----
Q 039512            6 QYWLLKTEPGEWSWEDQAANGGVTKWDGVKNKQAQKNMKAMRLNELCFFYHSGARSRRVVGVVSVLREWYEESGD-----   80 (154)
Q Consensus         6 ~YWLlKsEP~~fsiddl~~~~~~~~WdGVRNyqArn~lr~Mk~GD~~~fYHS~~~~~gIvGiaeVv~~aypD~t~-----   80 (154)
                      +||||||||++|||+||+++ ++++||||||||||||||+|++||+||||||||+++||||||+|++++|||||+     
T Consensus         1 AYWL~KsEP~~~s~~dl~~~-~~~~WdGVRNyqArn~lr~M~~GD~~~fYHS~~~~~~IvGia~V~~~aypDpt~~d~~s   79 (148)
T d2evea1           1 AYWLMKSEPDEFSISDLQRL-GKARWDGVRNYQARNFLRTMAEGDEFFFYHSSCPEPGIAGIGKIVKTAYPDPTALDPDS   79 (148)
T ss_dssp             CEEEEEECTTTSCHHHHHHH-SEEEECCCCCHHHHHHHHHCCTTCEEEEEECSSSSCEEEEEEEEEEEEEECGGGGCTTS
T ss_pred             CceeeccCCCcCCHHHHHhc-CCCCccCccCHHHHHHHHhcccCCEEEEEecCCCCCceEEEEEEEEeccccCccccCCC
Confidence            69999999999999999985 668999999999999999999999999999999999999999999999999983     


Q ss_pred             ----------CCCeeEEEEEEeeeeCCccChhhHhcCccccCceeccc-CCCcceecCHHHHHHHHHh
Q 039512           81 ----------GAGAGAVDVKEVGMMRRAVDLKEMKRDQELKGWALFRQ-PRLSVVNVEKKVWDRVCDL  137 (154)
Q Consensus        81 ----------~prw~~Vdv~~~~~l~~pv~L~~Lk~~p~L~~m~llr~-~RLSV~pVt~eew~~I~~l  137 (154)
                                +|||++|||+|+++|++||||++||++|+|++|.||++ +||||+|||++||++|++|
T Consensus        80 ~y~D~ks~~e~prw~~Vdv~~~~~~~~~vtL~elK~~~~l~~m~Lv~kgsRLSV~PVt~~ew~~I~~L  147 (148)
T d2evea1          80 HYHDAKATTEKNPWSALDIGFVDIFKNVLGLGYLKQQSQLEQLPLVQKGSRLSVMPVTAEQWAAILAL  147 (148)
T ss_dssp             TTCCTTCCSSCCCCEEEEEEEEEEEEEEEEHHHHHTCGGGTTCGGGSTTCCCSEEEECHHHHHHHHHH
T ss_pred             ceeccccccCCCCeeEEEEEeccccCCcccHHHHhcCcccccCceeccCCccCeeecCHHHHHHHHcC
Confidence                      57899999999999999999999999999999999965 7999999999999999987

>d2gbsa1 b.122.1.8 (A:2-137) Hypothetical protein RPA0253 {Rhodopseudomonas palustris [TaxId: 1076]}

class: All beta proteins
fold: PUA domain-like
superfamily: PUA domain-like
family: Atu2648/PH1033-like
domain: Hypothetical protein RPA0253
species: Rhodopseudomonas palustris [TaxId: 1076]

Probab=100.00  E-value=2.4e-69  Score=413.39  Aligned_cols=133  Identities=38%  Similarity=0.749  Sum_probs=127.6

Q ss_pred             eeEEeecCCCceehhcchhcCC-ceeecccccHHHHHHHHhccCCCEEEEEEeCCCCCeEEEEEEEeeecccCCCC-CCC
Q 039512            6 QYWLLKTEPGEWSWEDQAANGG-VTKWDGVKNKQAQKNMKAMRLNELCFFYHSGARSRRVVGVVSVLREWYEESGD-GAG   83 (154)
Q Consensus         6 ~YWLlKsEP~~fsiddl~~~~~-~~~WdGVRNyqArn~lr~Mk~GD~~~fYHS~~~~~gIvGiaeVv~~aypD~t~-~pr   83 (154)
                      +||||||||++||||||.++++ +++||||||||||||||+|++||+|||||||| .++|||+++|++++|||||+ +|+
T Consensus         1 aYWL~KsEP~~~siddl~~~~~~~~~WdGVRNyqArn~mr~M~~GD~~~fYHS~~-~~~ivg~~~v~~~~~pd~t~~~p~   79 (136)
T d2gbsa1           1 AYWLVKSEPSVWSWDQQVAKGAAGEAWTGVRNHSAKLHMVAMRRGDRAFYYHSNE-GKEIVGIAEIIREAYPDPTDASGK   79 (136)
T ss_dssp             CEEEEEECTTTSCHHHHHTTTTTCEECCCCCCHHHHHHHHHCCTTCEEEEEETTT-TCEEEEEEEEEEEEEECTTCTTSC
T ss_pred             CceeeecCCCCCCHHHHHHcCCCCCcCCCcccHHHHHHHHHhccCCEEEEEecCC-CCCcEEEEeeeecccCCccccccC
Confidence            6999999999999999988643 57899999999999999999999999999997 67899999999999999998 999


Q ss_pred             eeEEEEEEeeeeCCccChhhHhcCccccCceecccCCCcceecCHHHHHHHHHhcC
Q 039512           84 AGAVDVKEVGMMRRAVDLKEMKRDQELKGWALFRQPRLSVVNVEKKVWDRVCDLGG  139 (154)
Q Consensus        84 w~~Vdv~~~~~l~~pv~L~~Lk~~p~L~~m~llr~~RLSV~pVt~eew~~I~~l~~  139 (154)
                      |++|||+|+++|.+||+|++||+++.|++|.|||++||||+|||++||++|++|+|
T Consensus        80 w~~Vdvk~~~~~~~~V~L~~lK~~~~L~~m~Llk~~RLSV~PVt~~ew~~I~~L~g  135 (136)
T d2gbsa1          80 FVCVDIKADKPLKTPVTLAAVKAEPRLADMALMKYSRLSVQPVTAEEWKLVCKMGG  135 (136)
T ss_dssp             SEEEEEEEEEEEEEEEEHHHHHHCTTGGGSHHHHCTTCSSEEECHHHHHHHHHHTT
T ss_pred             ceeeecccCCccCcceeHHHHhcccccccCchhhcCCceeeeCCHHHHHHHHHhcC
Confidence            99999999999999999999999999999999999999999999999999999996

>d2ar1a1 b.122.1.8 (A:7-163) Hypothetical protein LmjF36.6870 {Leishmania major [TaxId: 5664]}

class: All beta proteins
fold: PUA domain-like
superfamily: PUA domain-like
family: Atu2648/PH1033-like
domain: Hypothetical protein LmjF36.6870
species: Leishmania major [TaxId: 5664]

Probab=100.00  E-value=3.9e-68  Score=414.92  Aligned_cols=136  Identities=35%  Similarity=0.568  Sum_probs=130.8

Q ss_pred             CCceeEEeecCCCceehhcchhcCCceeecccccHHHHHHHHhccCCCEEEEEEeCCCCCeEEEEEEEeeecccCCCC--
Q 039512            3 KERQYWLLKTEPGEWSWEDQAANGGVTKWDGVKNKQAQKNMKAMRLNELCFFYHSGARSRRVVGVVSVLREWYEESGD--   80 (154)
Q Consensus         3 ~~m~YWLlKsEP~~fsiddl~~~~~~~~WdGVRNyqArn~lr~Mk~GD~~~fYHS~~~~~gIvGiaeVv~~aypD~t~--   80 (154)
                      ..|+||||||||++|||+||.++ ++++||||||||||||||+|++||+||||||||+.++|||+++|++++|||||+  
T Consensus         3 ~~m~YWL~KsEP~~ys~~dl~~~-~~~~WdGVrN~qArn~lr~Mk~GD~~~fYHS~~~~~~i~g~~~v~~~~~pd~t~~d   81 (157)
T d2ar1a1           3 EDIHYWLLKSEPHKFSIDDLAKQ-KTSPWDGVRNYAARNNMRAMSVGDKVLFYHSNTKEPGVAGLAEVVRLAYDDFTALD   81 (157)
T ss_dssp             TSCCEEEEEECTTTSCHHHHHHH-SEEECCCCCCHHHHHHHHHCCTTCEEEEEECSSSSCEEEEEEEEEEEEEECGGGGC
T ss_pred             CCceeEEEecCCCcCCHHHHhhh-CCCCccCcchHHHHHHHHhCcCCCEEEEEEcCCCCCceEEEEEEeccccCCccccc
Confidence            47999999999999999999884 679999999999999999999999999999999999999999999999999973  


Q ss_pred             -------------CCCeeEEEEEEeeeeCCccChhhHhcCccccCceecccCCCcceecCHHHHHHHHHhcC
Q 039512           81 -------------GAGAGAVDVKEVGMMRRAVDLKEMKRDQELKGWALFRQPRLSVVNVEKKVWDRVCDLGG  139 (154)
Q Consensus        81 -------------~prw~~Vdv~~~~~l~~pv~L~~Lk~~p~L~~m~llr~~RLSV~pVt~eew~~I~~l~~  139 (154)
                                   +|+|++|||+|+++|++||||++||++|+|++|.|||++||||+|||++||++|++|++
T Consensus        82 ~~s~y~Dpks~~~~p~w~~VdV~~v~~~~~pVtL~eLK~~~~L~~m~Llr~~RLSV~PVt~~ew~~I~~L~~  153 (157)
T d2ar1a1          82 KTSEYFDPKATKEKNPWKMVDVKFVARWDTVLTLHELKSRRELQKMALFTQRRLSVQPVSASEYAYILRMNE  153 (157)
T ss_dssp             TTSTTCCTTCCSSCCCCEEEEEEEEEEEEEEEEHHHHTTCGGGTTCHHHHCSSCSEEEECHHHHHHHHHHHH
T ss_pred             CCccccCcccccCCCceEEEEEEEeeecCCccCHHHHhcCcccccCcEeecCccceeecCHHHHHHHHHHhc
Confidence                         57899999999999999999999999999999999999999999999999999999985

>d1zcea1 b.122.1.8 (A:2-147) Hypothetical protein Atu2648 {Agrobacterium tumefaciens [TaxId: 358]}

class: All beta proteins
fold: PUA domain-like
superfamily: PUA domain-like
family: Atu2648/PH1033-like
domain: Hypothetical protein Atu2648
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=100.00  E-value=4.2e-67  Score=404.97  Aligned_cols=133  Identities=40%  Similarity=0.670  Sum_probs=127.5

Q ss_pred             eeEEeecCCCceehhcchhcC-CceeecccccHHHHHHHHhccCCCEEEEEEeCCCCCeEEEEEEEeeecccCCCC--CC
Q 039512            6 QYWLLKTEPGEWSWEDQAANG-GVTKWDGVKNKQAQKNMKAMRLNELCFFYHSGARSRRVVGVVSVLREWYEESGD--GA   82 (154)
Q Consensus         6 ~YWLlKsEP~~fsiddl~~~~-~~~~WdGVRNyqArn~lr~Mk~GD~~~fYHS~~~~~gIvGiaeVv~~aypD~t~--~p   82 (154)
                      +||||||||++|||+||.+.+ +++.||||||||||||||+||+||+|||||||| .++|||+++|++++|||+|+  +|
T Consensus         2 nYWL~KsEP~~~s~~dl~~~~~~~~~WdGVRNyqArn~lr~Mk~GD~~ffYHS~~-~~~ivg~~~v~~~~y~d~t~~~~p   80 (146)
T d1zcea1           2 NYWLYKSEPFKWSWEMQKAKGETGEEWTGVRNYQARNNMRAMKIGDKGFFYHSNE-GLDVVGIVEVCALSHPDSTAEGDL   80 (146)
T ss_dssp             CEEEEEECTTTSCHHHHHHHGGGCEECCCCCCHHHHHHHHTCCTTCEEEEEETTT-TCEEEEEEEEEEEEEECTTSTTCS
T ss_pred             ceeEEecCCCCCCHHHHHhcCCCCCcccCcchHHHHHHHHhccCCCEEEEEecCC-CCCceEEEeeccccCCCcCcCCCC
Confidence            699999999999999998753 357899999999999999999999999999996 78999999999999999996  88


Q ss_pred             CeeEEEEEEeeeeCCccChhhHhcCccccCceecccCCCcceecCHHHHHHHHHhcC
Q 039512           83 GAGAVDVKEVGMMRRAVDLKEMKRDQELKGWALFRQPRLSVVNVEKKVWDRVCDLGG  139 (154)
Q Consensus        83 rw~~Vdv~~~~~l~~pv~L~~Lk~~p~L~~m~llr~~RLSV~pVt~eew~~I~~l~~  139 (154)
                      ||++|||+|+++|++||+|++||++|.|++|.|+|++||||+|||++||++|++|+|
T Consensus        81 rW~~VdV~~v~~~~~~VsL~eLK~~~~L~~m~Lvk~~RLSV~PVt~~ew~~I~~Lag  137 (146)
T d1zcea1          81 KWDCVDIRAVCDMPQPVSLKDVKANPKLEKMSLVTSMRLSVQPVTEEEYLEVCRMGG  137 (146)
T ss_dssp             SCEEEEEEEEEEEEEEEEHHHHHHCGGGTTCHHHHCSSCSEEEECHHHHHHHHHHTT
T ss_pred             CeEEEEEEeecccCceeeHHHhhcCcchhhCcchhcCccCeEecCHHHHHHHHHhcC
Confidence            999999999999999999999999999999999999999999999999999999997

>d2hd9a1 b.122.1.8 (A:1-145) Hypothetical protein PH1033 {Pyrococcus horikoshii [TaxId: 53953]}

class: All beta proteins
fold: PUA domain-like
superfamily: PUA domain-like
family: Atu2648/PH1033-like
domain: Hypothetical protein PH1033
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=99.08  E-value=1.5e-10  Score=86.70  Aligned_cols=122  Identities=16%  Similarity=0.318  Sum_probs=88.5

Q ss_pred             ceeEEeecCCCceehhcchhcCCceeecccccHHHHHHHHhccCCCEEEEEEeCCC-------CCeEEEEEEEeeecccC
Q 039512            5 RQYWLLKTEPGEWSWEDQAANGGVTKWDGVKNKQAQKNMKAMRLNELCFFYHSGAR-------SRRVVGVVSVLREWYEE   77 (154)
Q Consensus         5 m~YWLlKsEP~~fsiddl~~~~~~~~WdGVRNyqArn~lr~Mk~GD~~~fYHS~~~-------~~gIvGiaeVv~~aypD   77 (154)
                      |+|||.-++.+.|-+--  +   ...| ||. ...+|-++.|++||.++||-++..       ...++|+++|+++.|.|
T Consensus         1 MtYWi~v~s~e~~~~~~--~---~g~~-~~~-~~k~~~~~rikpGD~li~Y~~~~~~~~~~~~~q~f~ai~~V~~~~~~d   73 (145)
T d2hd9a1           1 MTYWICITNRENWEVIK--R---HNVW-GVP-KKHKNTLSRVKPGDKLVIYVRQEKDKEGNLLEPKIVGIYEVTSEPYVD   73 (145)
T ss_dssp             CCEEEEEECHHHHHHHH--H---HCEE-EEC-GGGHHHHTTCCTTCEEEEEECCEECTTCCEECCEEEEEEEECSCCEEC
T ss_pred             CceEEEeCCHHHHHHHH--h---CCEE-ecc-CCchhhHhhCCCCCEEEEEeCccccCCCcccccEEEEEEEEeccceec
Confidence            78999999776664432  2   2357 664 235667888999999999997621       14699999999999888


Q ss_pred             CCC---C----CC--eeEEEEEEeeeeCCccChhhHhcCccccCceeccc--C---CCcceecCHHHHHHHHHh
Q 039512           78 SGD---G----AG--AGAVDVKEVGMMRRAVDLKEMKRDQELKGWALFRQ--P---RLSVVNVEKKVWDRVCDL  137 (154)
Q Consensus        78 ~t~---~----pr--w~~Vdv~~~~~l~~pv~L~~Lk~~p~L~~m~llr~--~---RLSV~pVt~eew~~I~~l  137 (154)
                      .|.   +    ..  =++++|++...  .+|+++.|.  +.|+.+.--++  +   |-.++++++++|+.|.++
T Consensus        74 ~t~i~~~~~~~~~~~P~R~~v~~~~~--~ev~i~~l~--~~L~fi~~k~~W~~y~~r~g~~~I~~~D~~lI~~~  143 (145)
T d2hd9a1          74 FSRIFKPHRGGKETYPYRVKIKPIKI--GEINFKPLI--NDLKFIKNKKRWSMHFFGKAMRELPEEDYKLIEKL  143 (145)
T ss_dssp             CCCCSCCTTSSCCCCCEEEEEEEEEE--EEEESGGGG--GGCTTCCCSTTGGGGTTTCSEEEECHHHHHHHHHH
T ss_pred             ccccccccccCCceEEEEEEeEEeec--ccccHHHHH--hHHHhhcCchhhhHHHhcCCceecCHHHHHHHHHH
Confidence            763   1    11  27788888766  468888888  77776655443  2   235899999999999864

>d2evra2 d.3.1.16 (A:87-234) Cell wall-associated hydrolase Spr C-terminal domain {Nostoc punctiforme [TaxId: 272131]}

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: NlpC/P60
domain: Cell wall-associated hydrolase Spr C-terminal domain
species: Nostoc punctiforme [TaxId: 272131]

Probab=82.12  E-value=0.47  Score=33.97  Aligned_cols=23  Identities=26%  Similarity=0.366  Sum_probs=17.2

Q ss_pred             HhccCCCEEEEEEeCCCCCeEEEEE
Q 039512           44 KAMRLNELCFFYHSGARSRRVVGVV   68 (154)
Q Consensus        44 r~Mk~GD~~~fYHS~~~~~gIvGia   68 (154)
                      .++++||++||..++  .++=|||+
T Consensus        72 ~~l~pGDLvFf~~~~--~~~HVgIy   94 (148)
T d2evra2          72 AELVAGDLVFFGTSQ--KATHVGLY   94 (148)
T ss_dssp             GGCCTTCEEEEECSS--CEEEEEEE
T ss_pred             cccCcceeEEecCCC--CCCEeEEE
Confidence            469999999997554  45677775