Citrus Sinensis ID: 039528

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130------
Protein Sequence
LCELKNLFELNLKGNNVEGHLPNCLKYLSHLKVFDISQNQLSGSLSSTITSLTSLEYLDLSYNNFEGPCPLSLLAHHSKLEVLVLSSTILVKTENFLPTFQLKELGLANCSLNVVPTFLLHQYDLKYLDLSHNNLV
Secondary Structure (PSIPRED)
ccccccccEEEccccccEEEccHHHHccccccEEEcccccccEEccHHHHccccccEEEccccEEEEEccHHHHcccccccEEEcccccccccccccccccccEEEcccccccccHHHHHccccccEEEccccccc
Secondary Structure Prediction (SSPRO)
cccccccEEEEcccccccccccHHHccccccEEEEcccccccccccHHHcccccccEEEcccccccccccHHHHcccccccEEEccccccccccccccccccEEEEccccccccccHHHccccccEEEEccccccc
Coil and Loop (DISEMBL)
LCELKNLFElnlkgnnveghlPNCLKYLSHLKvfdisqnqlsgslsstitslTSLEYLDlsynnfegpcplsllahHSKLEVLVLSSTIlvktenflptfqlkelglancslnvvptfllhqydlkyldLSHNNLV
Flexible Loop (DISEMBL)
LCELKNLFELNLKGNNVEGHLPNCLKYLSHLKVFDISQNQLSGSLSSTITSLTSLEYLDLSYNNFEGPCPLSLLAHHSKLEVLVLSSTILVKTENFLPTFQLKELGLANCSLNVVPTFLLHQYDLKYLDLSHNNLV
Low Complexity Region (SEG)
LCELKNLFELNLKGNNVEGHLPNCLKYLSHLKVFDISQNQlsgslsstitsltslEYLDLSYNNFEGPCPLSLLAHHSKLEVLVLSSTILVKTENFLPTFQLKELGLANCSLNVVPTFLLHQYDLKYLDLSHNNLV
Disordered region (IsUnstruct)
****KNLFELNLKGNNVEGHLPNCLKYLSHLKVFDISQNQLSGSLSSTITSLTSLEYLDLSYNNFEGPCPLSLLAHHSKLEVLVLSSTILVKTENFLPTFQLKELGLANCSLNVVPTFLLHQYDLKYLDL******
Disordered Region (DISOPRED)
LCELKNLFELNLKGNNVEGHLPNCLKYLSHLKVFDISQNQLSGSLSSTITSLTSLEYLDLSYNNFEGPCPLSLLAHHSKLEVLVLSSTILVKTENFLPTFQLKELGLANCSLNVVPTFLLHQYDLKYLDLSHNNLV
Disordered Region (DISEMBL)
LCELKNLFELNLKGNNVEGHLPNCLKYLSHLKVFDISQNQLSGSLSSTITSLTSLEYLDLSYNNFEGPCPLSLLAHHSKLEVLVLSSTILVKTENFLPTFQLKELGLANCSLNVVPTFLLHQYDLKYLDLSHNNLV
Disordered Region (DISPRO)
*CELKNLFELNLKGNNVEGHLPNCLKYLSHLKVFDISQNQLSGSLSSTITSLTSLEYLDLSYNNFEGPCPLSLLAHHSKLEVLVLSSTILVKTENFLPTFQLKELGLANCSLNVVPTFLLHQYDLKYLDLS*****
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
LCELKNLFELNLKGNNVEGHLPNCLKYLSHLKVFDISQNQLSGSLSSTITSLTSLEYLDLSYNNFEGPCPLSLLAHHSKLEVLVLSSTILVKTENFLPTFQLKELGLANCSLNVVPTFLLHQYDLKYLDLSHNNLV
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	136	2.2.26 [Sep-21-2011]
C0LGG8	1038	Probable LRR receptor-lik	no	no	1.0	0.131	0.345	1e-10
C0LGP9	784	Probable leucine-rich rep	no	no	0.433	0.075	0.414	5e-10
C0LGV1	1135	LRR receptor-like serine/	no	no	0.933	0.111	0.369	9e-10
Q9LJ64	956	Pollen-specific leucine-r	no	no	0.492	0.070	0.447	4e-09
C0LGU5	614	Probable LRR receptor-lik	no	no	0.507	0.112	0.414	5e-09
C0LGG7	953	Probable LRR receptor-lik	no	no	0.970	0.138	0.321	6e-09
Q42371	976	LRR receptor-like serine/	no	no	0.963	0.134	0.319	7e-09
C0LGT1	613	Probable LRR receptor-lik	no	no	0.5	0.110	0.428	9e-09
Q9LP24	1120	Probable leucine-rich rep	no	no	0.963	0.116	0.357	1e-08
Q8RY65	635	Protein NSP-INTERACTING K	no	no	0.375	0.080	0.397	1e-08

>sp|C0LGG8|Y5343_ARATH Probable LRR receptor-like serine/threonine-protein kinase At1g53430 OS=Arabidopsis thaliana GN=At1g53430 PE=1 SV=1

 Score = 65.1 bits (157), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 48/139 (34%), Positives = 68/139 (48%), Gaps = 3/139 (2%)

Query: 1   LCELKNLFELNLKGNNVEGHLPNCLKYLSHLKVFDISQNQLSGSLSSTITSLTSLEYLDL 60
           L  L++L EL L  NN  G +P  L  L +L  F I  N LSG +   I + T LE LDL
Sbjct: 181 LGNLRSLKELLLSANNFTGQIPESLSNLKNLTEFRIDGNSLSGKIPDFIGNWTLLERLDL 240

Query: 61  SYNNFEGPCPLSL--LAHHSKLEVLVLSSTILVKTENFLPTFQLKELGLANCSL-NVVPT 117
              + EGP P S+  L + ++L +  L         +     ++K L L NC +   +P 
Sbjct: 241 QGTSMEGPIPPSISNLTNLTELRITDLRGQAAFSFPDLRNLMKMKRLVLRNCLIRGPIPE 300

Query: 118 FLLHQYDLKYLDLSHNNLV 136
           ++    +LK LDLS N L 
Sbjct: 301 YIGSMSELKTLDLSSNMLT 319

Arabidopsis thaliana (taxid: 3702)
EC: 2EC: .EC: 7EC: .EC: 1EC: 1EC: .EC: 1

>sp|C0LGP9|IMK3_ARATH Probable leucine-rich repeat receptor-like protein kinase IMK3 OS=Arabidopsis thaliana GN=IMK3 PE=1 SV=1

 Score = 63.2 bits (152), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 29/70 (41%), Positives = 46/70 (65%)

Query: 1   LCELKNLFELNLKGNNVEGHLPNCLKYLSHLKVFDISQNQLSGSLSSTITSLTSLEYLDL 60
           L +L  L ++++ GN+V GH+P  L  +S L   D+SQN+L+G +  +I+ L SL + ++
Sbjct: 290 LSKLTKLRKMDISGNSVSGHIPETLGNISSLIHLDLSQNKLTGEIPISISDLESLNFFNV 349

Query: 61  SYNNFEGPCP 70
           SYNN  GP P
Sbjct: 350 SYNNLSGPVP 359

Can phosphorylate AGL24.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|C0LGV1|RCH1_ARATH LRR receptor-like serine/threonine-protein kinase RCH1 OS=Arabidopsis thaliana GN=RCH1 PE=2 SV=1

 Score = 62.0 bits (149), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 51/138 (36%), Positives = 76/138 (55%), Gaps = 11/138 (7%)

Query: 5   KNLFELNLKGNNVEGHLPNCLKYLSHLKVFDISQNQLSGSLSSTITSLTSLEYLDLSYNN 64
           + L  LNL  N ++G+LP  L  L+ L+V D+S N L+G +  ++  L SL  L LS N+
Sbjct: 515 RQLQMLNLSNNTLQGYLPLSLSSLTKLQVLDVSSNDLTGKIPDSLGHLISLNRLILSKNS 574

Query: 65  FEGPCPLSLLAHHSKLEVLVLSSTILVKTENFLPT--FQLKELGLA-NCSLNVVPTFLLH 121
           F G  P S L H + L++L LSS  +  T   +P   F +++L +A N S N +  F+  
Sbjct: 575 FNGEIP-SSLGHCTNLQLLDLSSNNISGT---IPEELFDIQDLDIALNLSWNSLDGFIPE 630

Query: 122 QYD----LKYLDLSHNNL 135
           +      L  LD+SHN L
Sbjct: 631 RISALNRLSVLDISHNML 648

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9LJ64|PLRX1_ARATH Pollen-specific leucine-rich repeat extensin-like protein 1 OS=Arabidopsis thaliana GN=PEX1 PE=2 SV=1

 Score = 60.1 bits (144), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 30/67 (44%), Positives = 44/67 (65%)

Query: 1   LCELKNLFELNLKGNNVEGHLPNCLKYLSHLKVFDISQNQLSGSLSSTITSLTSLEYLDL 60
           + ++KNL E+   GNN+ G LPN +  L+++ VFD S N   GSL ST++ L ++E +D 
Sbjct: 258 IGQMKNLNEIVFIGNNLSGCLPNEIGSLNNVTVFDASSNGFVGSLPSTLSGLANVEQMDF 317

Query: 61  SYNNFEG 67
           SYN F G
Sbjct: 318 SYNKFTG 324

Modulates cell morphogenesis by regulating cell wall formation and assembly, and/or growth polarization.

Arabidopsis thaliana (taxid: 3702)

>sp|C0LGU5|Y5457_ARATH Probable LRR receptor-like serine/threonine-protein kinase At5g45780 OS=Arabidopsis thaliana GN=At5g45780 PE=2 SV=1

 Score = 59.7 bits (143), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 29/70 (41%), Positives = 41/70 (58%)

Query: 1   LCELKNLFELNLKGNNVEGHLPNCLKYLSHLKVFDISQNQLSGSLSSTITSLTSLEYLDL 60
           L +L  L  L+L GN   G +P  L +L+HL    +S+N LSG +   +  L+ L +LDL
Sbjct: 123 LGQLSELETLDLSGNRFSGEIPASLGFLTHLNYLRLSRNLLSGQVPHLVAGLSGLSFLDL 182

Query: 61  SYNNFEGPCP 70
           S+NN  GP P
Sbjct: 183 SFNNLSGPTP 192

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|C0LGG7|Y1534_ARATH Probable LRR receptor-like serine/threonine-protein kinase At1g53420 OS=Arabidopsis thaliana GN=At1g53420 PE=2 SV=2

 Score = 59.3 bits (142), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 45/140 (32%), Positives = 71/140 (50%), Gaps = 8/140 (5%)

Query: 1   LCELKNLFELNLKGNNVEGHLPNCLKYLSHLKVFDISQNQLSGSLSSTITSLTSLEYLDL 60
           L  L N+ ++ L  NN  G +P+    L+ L+ F +S NQLSG++   I   T LE L +
Sbjct: 154 LGNLPNIQQMILSSNNFNGEIPSTFAKLTTLRDFRVSDNQLSGTIPDFIQKWTKLERLFI 213

Query: 61  SYNNFEGPCPLSLLAHHSKLEVLVLSSTILVKTENFLPTFQ----LKELGLANCSL-NVV 115
             +   GP P+++    S +E+  L  + L   E+  P  +    ++ L L NC+L   +
Sbjct: 214 QASGLVGPIPIAI---ASLVELKDLRISDLNGPESPFPQLRNIKKMETLILRNCNLTGDL 270

Query: 116 PTFLLHQYDLKYLDLSHNNL 135
           P +L      K+LDLS N L
Sbjct: 271 PDYLGKITSFKFLDLSFNKL 290

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q42371|ERECT_ARATH LRR receptor-like serine/threonine-protein kinase ERECTA OS=Arabidopsis thaliana GN=ERECTA PE=1 SV=1

 Score = 59.3 bits (142), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 45/141 (31%), Positives = 76/141 (53%), Gaps = 10/141 (7%)

Query: 1   LCELKNLFELNLKGNNVEGHLPNCLKYLSHLKVFDISQNQLSGSLSSTITSLTSLEYLDL 60
           L +L +LF+LN+  N++EG +P+ L   ++L   ++  N+ SG++      L S+ YL+L
Sbjct: 351 LGKLTDLFDLNVANNDLEGPIPDHLSSCTNLNSLNVHGNKFSGTIPRAFQKLESMTYLNL 410

Query: 61  SYNNFEGPCPLSLLAHHSKLEVLVLSSTILVKTENFLPT--FQLKELGLANCSLN----V 114
           S NN +GP P+  L+    L+ L LS+    K    +P+    L+ L   N S N    V
Sbjct: 411 SSNNIKGPIPVE-LSRIGNLDTLDLSNN---KINGIIPSSLGDLEHLLKMNLSRNHITGV 466

Query: 115 VPTFLLHQYDLKYLDLSHNNL 135
           VP    +   +  +DLS+N++
Sbjct: 467 VPGDFGNLRSIMEIDLSNNDI 487

Receptor kinase that, together with ERL1 and ERL2, regulates aerial architecture, including inflorescence (e.g. shoot apical meristem-originating organ shape, elongation of the internode and pedicels, and adaxial-abaxial polarity), and stomatal patterning (e.g. density and clustering), probably by tuning cell division and expansion. Modulates plant transpiration efficiency by controlling stomatal density, leaf photosynthetic capacity, epidermal cell expansion, mesophyll cell proliferation and cell-cell contact. Probable major trait regulating canalization (maintenance of phenotype despite varying environment) in many aspect of the plant physiology (e.g. plant morphology, light-dependent leaves number, branch number, flowering time, phytate and mineral concentrations) by transducing microenvironmental variation into phenotypic differentiation (ecological amplifier). May maintain development integrity in heat stress conditions. Regulates cell wall composition and structure. Confers resistance to the pathogenic bacteria Ralstonia solanacearum and to the necrotrophic fungi Plectosphaerella cucumerina and Pythium irregulare, and required for callose deposition upon infection. Resistance to P.cucumerina seems cell wall-mediated.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|C0LGT1|Y5129_ARATH Probable LRR receptor-like serine/threonine-protein kinase At5g10290 OS=Arabidopsis thaliana GN=At5g10290 PE=1 SV=1

 Score = 58.9 bits (141), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 30/70 (42%), Positives = 40/70 (57%)

Query: 4   LKNLFELNLKGNNVEGHLPNCLKYLSHLKVFDISQNQLSGSLSSTITSLTSLEYLDLSYN 63
           L+NL  L LKGN + G +P     L+ L   D+  NQL+G + STI +L  L++L LS N
Sbjct: 93  LENLKTLTLKGNGITGEIPEDFGNLTSLTSLDLEDNQLTGRIPSTIGNLKKLQFLTLSRN 152

Query: 64  NFEGPCPLSL 73
              G  P SL
Sbjct: 153 KLNGTIPESL 162

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9LP24|Y1571_ARATH Probable leucine-rich repeat receptor-like protein kinase At1g35710 OS=Arabidopsis thaliana GN=At1g35710 PE=2 SV=1

 Score = 58.5 bits (140), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 50/140 (35%), Positives = 75/140 (53%), Gaps = 9/140 (6%)

Query: 1   LCELKNLFELNLKGNNVEGHLPNCLKYLSHLKVFDISQNQLSGSLSSTITSLTSLEYLDL 60
           +  +  L EL+L  NN+ G LP  +  L++L    ++ NQLSG + + ++ LT+LE LDL
Sbjct: 578 IWNMTQLVELDLSTNNLFGELPEAIGNLTNLSRLRLNGNQLSGRVPAGLSFLTNLESLDL 637

Query: 61  SYNNFEGPCPLSLLAHHSKLEVLVLSSTILVKTENFLPTF----QLKELGLANCSLNV-V 115
           S NNF    P +  +   KL  + LS     K +  +P      QL +L L++  L+  +
Sbjct: 638 SSNNFSSEIPQTFDSFL-KLHDMNLSRN---KFDGSIPRLSKLTQLTQLDLSHNQLDGEI 693

Query: 116 PTFLLHQYDLKYLDLSHNNL 135
           P+ L     L  LDLSHNNL
Sbjct: 694 PSQLSSLQSLDKLDLSHNNL 713

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q8RY65|NIK2_ARATH Protein NSP-INTERACTING KINASE 2 OS=Arabidopsis thaliana GN=NIK2 PE=1 SV=1

 Score = 58.5 bits (140), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 29/73 (39%), Positives = 45/73 (61%)

Query: 1   LCELKNLFELNLKGNNVEGHLPNCLKYLSHLKVFDISQNQLSGSLSSTITSLTSLEYLDL 60
           + +L  L  L+L  NN  G +P  L Y  +L+   ++ N L+G++ S++ ++T L +LDL
Sbjct: 125 IGKLMKLKTLDLSTNNFTGQIPFTLSYSKNLQYLRVNNNSLTGTIPSSLANMTQLTFLDL 184

Query: 61  SYNNFEGPCPLSL 73
           SYNN  GP P SL
Sbjct: 185 SYNNLSGPVPRSL 197

Involved in defense response to geminivirus infection (By similarity). Phosphorylates RPL10A in vitro.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	136
240254367	976	receptor like protein 14 [Arabidopsis th	0.992	0.138	0.525	2e-26
12323813	951	disease resistance protein, putative; 63	0.992	0.141	0.525	2e-26
255553269	2793	receptor-kinase, putative [Ricinus commu	1.0	0.048	0.482	3e-26
225465991	1031	PREDICTED: LRR receptor-like serine/thre	0.992	0.130	0.496	7e-25
449491173	2349	PREDICTED: uncharacterized protein LOC10	1.0	0.057	0.472	6e-24
358345471	933	Receptor kinase [Medicago truncatula] gi	0.992	0.144	0.493	8e-24
449436625	354	PREDICTED: putative leucine-rich repeat	1.0	0.384	0.463	1e-23
449509330	808	PREDICTED: probable LRR receptor-like se	1.0	0.168	0.463	2e-23
297842171	966	leucine-rich repeat family protein [Arab	0.992	0.139	0.474	2e-23
15221162	965	receptor like protein 15 [Arabidopsis th	0.992	0.139	0.474	2e-23

>gi|240254367|ref|NP_177558.4| receptor like protein 14 [Arabidopsis thaliana] gi|332197442|gb|AEE35563.1| receptor like protein 14 [Arabidopsis thaliana]

 Score =  124 bits (310), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 73/139 (52%), Positives = 96/139 (69%), Gaps = 4/139 (2%)

Query: 1   LCELKNLFELNLKGNNVEGHLPNCLKYLSHLKVFDISQNQLSGSLSSTITSLTSLEYLDL 60
            CE+KNL +L+L+GN  EG LP CL  L+ L+V D+S NQLSG+L ++  SL SLEYL L
Sbjct: 256 FCEMKNLRQLDLRGNYFEGQLPVCLGNLNKLRVLDLSSNQLSGNLPASFNSLESLEYLSL 315

Query: 61  SYNNFEGPCPLSLLAHHSKLEVLVLSST---ILVKTE-NFLPTFQLKELGLANCSLNVVP 116
           S NNFEG   L+ LA+ +KL+V  LSST   + V+TE N+LP FQL    L  CSL  +P
Sbjct: 316 SDNNFEGFFSLNPLANLTKLKVFRLSSTSEMLQVETESNWLPKFQLTVAALPFCSLGKIP 375

Query: 117 TFLLHQYDLKYLDLSHNNL 135
            FL++Q +L+ +DLS N L
Sbjct: 376 NFLVYQTNLRLVDLSSNRL 394

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|12323813|gb|AAG51872.1|AC079678_2 disease resistance protein, putative; 6346-10057 [Arabidopsis thaliana]

 Score =  123 bits (309), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 73/139 (52%), Positives = 96/139 (69%), Gaps = 4/139 (2%)

Query: 1   LCELKNLFELNLKGNNVEGHLPNCLKYLSHLKVFDISQNQLSGSLSSTITSLTSLEYLDL 60
            CE+KNL +L+L+GN  EG LP CL  L+ L+V D+S NQLSG+L ++  SL SLEYL L
Sbjct: 231 FCEMKNLRQLDLRGNYFEGQLPVCLGNLNKLRVLDLSSNQLSGNLPASFNSLESLEYLSL 290

Query: 61  SYNNFEGPCPLSLLAHHSKLEVLVLSST---ILVKTE-NFLPTFQLKELGLANCSLNVVP 116
           S NNFEG   L+ LA+ +KL+V  LSST   + V+TE N+LP FQL    L  CSL  +P
Sbjct: 291 SDNNFEGFFSLNPLANLTKLKVFRLSSTSEMLQVETESNWLPKFQLTVAALPFCSLGKIP 350

Query: 117 TFLLHQYDLKYLDLSHNNL 135
            FL++Q +L+ +DLS N L
Sbjct: 351 NFLVYQTNLRLVDLSSNRL 369

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255553269|ref|XP_002517677.1| receptor-kinase, putative [Ricinus communis] gi|223543309|gb|EEF44841.1| receptor-kinase, putative [Ricinus communis]

 Score =  123 bits (308), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 70/145 (48%), Positives = 100/145 (68%), Gaps = 9/145 (6%)

Query: 1    LCELKNLFELNLKGNNVEGHLPNCLKYLSHLKVFDISQNQLSGSLSSTITSLTSLEYLDL 60
            LC LK+L EL L  N   G LP CL  L++L+V D++ N+ SG++ S ++ LTSL+YL L
Sbjct: 1207 LCGLKSLLELGLSVNQFSGPLPQCLSNLTNLQVLDLTSNEFSGNIQSVVSKLTSLKYLFL 1266

Query: 61   SYNNFEGPCPLSLLAHHSKLEVLVLSS-TILVKTEN----FLPTFQLKELGLANCSLNV- 114
            S N FEG    S LA+H KLE+  LSS + +++ E     + PTFQLK + L NC+LN+ 
Sbjct: 1267 SGNKFEGLFSFSSLANHKKLEIFELSSGSTMLELETEIPVWFPTFQLKVIDLPNCNLNLR 1326

Query: 115  ---VPTFLLHQYDLKYLDLSHNNLV 136
               +P+FLL+Q+DL+++DLSHNNL+
Sbjct: 1327 TRRIPSFLLYQHDLQFIDLSHNNLI 1351

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225465991|ref|XP_002264576.1| PREDICTED: LRR receptor-like serine/threonine-protein kinase GSO1-like [Vitis vinifera]

 Score =  118 bits (296), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 72/145 (49%), Positives = 96/145 (66%), Gaps = 10/145 (6%)

Query: 1   LCELKNLFELNLKGNNVEGHLPNCLKYLSHLKVFDISQNQLSGSL-SSTITSLTSLEYLD 59
            C+LKNL EL+L GN+++G  P CL  +  LK+ D+S NQ +G + SS I++LTSLEYLD
Sbjct: 286 FCKLKNLQELDLSGNSLDGMFPPCLSNMRSLKLLDLSLNQFTGKIPSSLISNLTSLEYLD 345

Query: 60  LSYNNFEGPCPLSLLAHHSKLEVLVLSST---ILVKTE--NFLPTFQLKELGLANCSLN- 113
           L  N  EG    S  ++HS LEV+VLSS      V+TE  +++P FQLK L LA C+LN 
Sbjct: 346 LGSNRLEGRLSFSAFSNHSNLEVIVLSSDSDIFEVETESTSWVPQFQLKILSLAYCNLNK 405

Query: 114 ---VVPTFLLHQYDLKYLDLSHNNL 135
              ++P FL  QYDL  +DL HN+L
Sbjct: 406 QTGIIPKFLSQQYDLIAVDLPHNDL 430

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449491173|ref|XP_004158820.1| PREDICTED: uncharacterized protein LOC101224990 [Cucumis sativus]

 Score =  115 bits (288), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 69/146 (47%), Positives = 91/146 (62%), Gaps = 10/146 (6%)

Query: 1   LCELKNLFELNLKGNNVEGHLPNCLKYLSHLKVFDISQNQLSGSLSSTITSLTSLEYLDL 60
            CE  NL EL L+ N ++G L  C+   + LKV DIS N+ SG + +TI+ LTS+EYL L
Sbjct: 217 FCEANNLIELKLRNNQIKGELSECVGNFTKLKVVDISYNEFSGKIPTTISKLTSMEYLSL 276

Query: 61  SYNNFEGPCPLSLLAHHSKLE--VLVLSSTILVKTE---NFLPTFQLKELGLANCSLN-- 113
             N+FEG    S LA+HS L    L+  + I V+TE    + P FQL+ L + +C+LN  
Sbjct: 277 EENDFEGTFSFSSLANHSNLRHFHLLGGNNIRVETEELHEWQPKFQLETLSMPSCNLNDQ 336

Query: 114 ---VVPTFLLHQYDLKYLDLSHNNLV 136
                PTFLL Q+ LKYLDLSHN+LV
Sbjct: 337 TASKFPTFLLSQHKLKYLDLSHNHLV 362

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|358345471|ref|XP_003636801.1| Receptor kinase [Medicago truncatula] gi|355502736|gb|AES83939.1| Receptor kinase [Medicago truncatula]

 Score =  115 bits (287), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 72/146 (49%), Positives = 94/146 (64%), Gaps = 11/146 (7%)

Query: 1   LCELKNLFELNLKGNNVEGHLPNCLKYLSHLKVFDISQNQLSGSLSSTITSLTSLEYLDL 60
           LC +KNL EL+L  N + G+ P CL+ L+ L+V D+S N   G++ S I SL SLEYL L
Sbjct: 178 LCGMKNLQELDLSRNGMSGYFPQCLRNLTSLRVLDLSSNNFVGNIPSFIISLKSLEYLSL 237

Query: 61  SYNNFEGPCPLSLLAHHSKLEVLVLS---STILVKTE---NFLPTFQLKELGLANCSLN- 113
              NF+G    S L +HSKLEV +LS   + + V+TE   ++ PTFQLK L L NC LN 
Sbjct: 238 FDTNFDGIFSFSSLNNHSKLEVFLLSPKTNNLYVETEESPSWHPTFQLKVLQLRNCFLNS 297

Query: 114 ----VVPTFLLHQYDLKYLDLSHNNL 135
                 PTFLL+Q++L+ LDLSHN L
Sbjct: 298 KRDGTFPTFLLYQHELQLLDLSHNKL 323

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449436625|ref|XP_004136093.1| PREDICTED: putative leucine-rich repeat receptor-like serine/threonine-protein kinase At2g24130-like [Cucumis sativus]

 Score =  114 bits (285), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 69/149 (46%), Positives = 93/149 (62%), Gaps = 13/149 (8%)

Query: 1   LCELKNLFELNLKGNNVEGHLPNCLKYLSHLKVFDISQNQLSGSL-SSTITSLTSLEYLD 59
            C+ K+L ELN++ N + G  P C+   + LK+ DIS NQ SG + ++TI+ LTS+EYL 
Sbjct: 109 FCKSKSLIELNIRNNEIRGEFPECIGNFTGLKLLDISSNQFSGKIPNATISKLTSIEYLS 168

Query: 60  LSYNNFEGPCPLSLLAHHSKLEVLVLS-----STILVKT--ENFLPTFQLKELGLANCSL 112
           L  N+FEG    S LA+HS L    LS       I V+T    + PTFQL+ L L +C+L
Sbjct: 169 LYENDFEGSFSFSSLANHSNLWYFKLSRRNNTGNIQVETGVHEWHPTFQLQILSLRSCNL 228

Query: 113 NV-----VPTFLLHQYDLKYLDLSHNNLV 136
           N      +P+FLL Q+ LKYLDL+HNNLV
Sbjct: 229 NSQTASKIPSFLLTQHKLKYLDLAHNNLV 257

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449509330|ref|XP_004163557.1| PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At1g34110-like [Cucumis sativus]

 Score =  114 bits (284), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 69/149 (46%), Positives = 93/149 (62%), Gaps = 13/149 (8%)

Query: 1   LCELKNLFELNLKGNNVEGHLPNCLKYLSHLKVFDISQNQLSGSL-SSTITSLTSLEYLD 59
            C+ K+L ELN++ N + G  P C+   + LK+ DIS NQ SG + ++TI+ LTS+EYL 
Sbjct: 563 FCKSKSLIELNIRNNEIRGEFPECIGNFTGLKLLDISSNQFSGKIPNATISKLTSIEYLS 622

Query: 60  LSYNNFEGPCPLSLLAHHSKLEVLVLS-----STILVKT--ENFLPTFQLKELGLANCSL 112
           L  N+FEG    S LA+HS L    LS       I V+T    + PTFQL+ L L +C+L
Sbjct: 623 LYENDFEGSFSFSSLANHSNLWYFKLSRRNNTGNIQVETGVHEWHPTFQLQILSLRSCNL 682

Query: 113 NV-----VPTFLLHQYDLKYLDLSHNNLV 136
           N      +P+FLL Q+ LKYLDL+HNNLV
Sbjct: 683 NSQTASKIPSFLLTQHKLKYLDLAHNNLV 711

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297842171|ref|XP_002888967.1| leucine-rich repeat family protein [Arabidopsis lyrata subsp. lyrata] gi|297334808|gb|EFH65226.1| leucine-rich repeat family protein [Arabidopsis lyrata subsp. lyrata]

 Score =  113 bits (283), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 66/139 (47%), Positives = 94/139 (67%), Gaps = 4/139 (2%)

Query: 1   LCELKNLFELNLKGNNVEGHLPNCLKYLSHLKVFDISQNQLSGSLSSTITSLTSLEYLDL 60
           +CELKN  EL+L  N + GH P+CL  L+ L+V D+S NQL+G++ ST+ SL SLEYL L
Sbjct: 243 ICELKNTQELDLSQNQLVGHFPSCLTSLTGLRVLDLSSNQLTGTVPSTLGSLPSLEYLSL 302

Query: 61  SYNNFEGPCPLSLLAHHSKLEVLVL---SSTILVKTE-NFLPTFQLKELGLANCSLNVVP 116
             N+FEG      LA+ S L VL L   SS++ V +E ++ P FQL  + L +C++  VP
Sbjct: 303 FDNDFEGSFSFGSLANLSNLMVLKLCSKSSSLQVLSESSWKPKFQLSVIALRSCNMEKVP 362

Query: 117 TFLLHQYDLKYLDLSHNNL 135
            FL+HQ DL+++DLS+N +
Sbjct: 363 HFLIHQKDLRHVDLSNNKI 381

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15221162|ref|NP_177559.1| receptor like protein 15 [Arabidopsis thaliana] gi|12323812|gb|AAG51871.1|AC079678_1 disease resistance protein, putative; 1096-4664 [Arabidopsis thaliana] gi|332197443|gb|AEE35564.1| receptor like protein 15 [Arabidopsis thaliana]

 Score =  113 bits (283), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 66/139 (47%), Positives = 95/139 (68%), Gaps = 4/139 (2%)

Query: 1   LCELKNLFELNLKGNNVEGHLPNCLKYLSHLKVFDISQNQLSGSLSSTITSLTSLEYLDL 60
           +CEL N+ EL+L  N + GHLP+CL  L+ L+V D+S N+L+G++ S++ SL SLEYL L
Sbjct: 240 ICELNNMQELDLSQNKLVGHLPSCLTSLTGLRVLDLSSNKLTGTVPSSLGSLQSLEYLSL 299

Query: 61  SYNNFEGPCPLSLLAHHSKLEVLVL---SSTILVKTE-NFLPTFQLKELGLANCSLNVVP 116
             N+FEG      LA+ S L VL L   SS++ V +E ++ P FQL  + L +C++  VP
Sbjct: 300 FDNDFEGSFSFGSLANLSNLMVLKLCSKSSSLQVLSESSWKPKFQLSVIALRSCNMEKVP 359

Query: 117 TFLLHQYDLKYLDLSHNNL 135
            FLLHQ DL+++DLS NN+
Sbjct: 360 HFLLHQKDLRHVDLSDNNI 378

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	136
TAIR|locus:2037308	976	RLP14 "AT1G74180" [Arabidopsis	0.985	0.137	0.471	7.5e-23
TAIR|locus:2019662	965	RLP15 "AT1G74190" [Arabidopsis	0.992	0.139	0.424	3e-21
TAIR|locus:2037313	1000	RLP13 "AT1G74170" [Arabidopsis	0.985	0.134	0.434	9.9e-20
TAIR|locus:2155909	908	RLP56 "AT5G49290" [Arabidopsis	0.985	0.147	0.413	2.1e-18
TAIR|locus:2025012	1083	RLP1 "AT1G07390" [Arabidopsis	0.985	0.123	0.418	2.5e-17
TAIR|locus:2040075	935	RLP21 "AT2G25470" [Arabidopsis	0.970	0.141	0.384	5.3e-14
TAIR|locus:2101943	891	RLP45 "AT3G53240" [Arabidopsis	0.985	0.150	0.354	1e-13
TAIR|locus:2825384	847	RLP12 "AT1G71400" [Arabidopsis	0.941	0.151	0.316	1e-08
TAIR|locus:2121348	391	AT4G28380 [Arabidopsis thalian	0.536	0.186	0.342	1.1e-08
TAIR|locus:2094563	595	RLP36 "receptor like protein 3	0.985	0.225	0.274	1.3e-08

TAIR|locus:2037308 RLP14 "AT1G74180" [Arabidopsis thaliana (taxid:3702)]

 Score = 276 (102.2 bits), Expect = 7.5e-23, P = 7.5e-23
 Identities = 65/138 (47%), Positives = 85/138 (61%)

Query:     2 CELKNLFELNLKGNNVEGHLPNCLKYLSHLKVFDISQNQXXXXXXXXXXXXXXXEYLDLS 61
             CE+KNL +L+L+GN  EG LP CL  L+ L+V D+S NQ               EYL LS
Sbjct:   257 CEMKNLRQLDLRGNYFEGQLPVCLGNLNKLRVLDLSSNQLSGNLPASFNSLESLEYLSLS 316

Query:    62 YNNFEGPCPLSLLAHHSKLEVLVLSST---ILVKTE-NFLPTFQLKELGLANCSLNVVPT 117
              NNFEG   L+ LA+ +KL+V  LSST   + V+TE N+LP FQL    L  CSL  +P 
Sbjct:   317 DNNFEGFFSLNPLANLTKLKVFRLSSTSEMLQVETESNWLPKFQLTVAALPFCSLGKIPN 376

Query:   118 FLLHQYDLKYLDLSHNNL 135
             FL++Q +L+ +DLS N L
Sbjct:   377 FLVYQTNLRLVDLSSNRL 394

GO:0007165 "signal transduction" evidence=IC

GO:0009507 "chloroplast" evidence=IDA

TAIR|locus:2019662 RLP15 "AT1G74190" [Arabidopsis thaliana (taxid:3702)]

 Score = 261 (96.9 bits), Expect = 3.0e-21, P = 3.0e-21
 Identities = 59/139 (42%), Positives = 83/139 (59%)

Query:     1 LCELKNLFELNLKGNNVEGHLPNCLKYLSHLKVFDISQNQXXXXXXXXXXXXXXXEYLDL 60
             +CEL N+ EL+L  N + GHLP+CL  L+ L+V D+S N+               EYL L
Sbjct:   240 ICELNNMQELDLSQNKLVGHLPSCLTSLTGLRVLDLSSNKLTGTVPSSLGSLQSLEYLSL 299

Query:    61 SYNNFEGPCPLSLLAHHSKLEVLVL---SSTILVKTEN-FLPTFQLKELGLANCSLNVVP 116
               N+FEG      LA+ S L VL L   SS++ V +E+ + P FQL  + L +C++  VP
Sbjct:   300 FDNDFEGSFSFGSLANLSNLMVLKLCSKSSSLQVLSESSWKPKFQLSVIALRSCNMEKVP 359

Query:   117 TFLLHQYDLKYLDLSHNNL 135
              FLLHQ DL+++DLS NN+
Sbjct:   360 HFLLHQKDLRHVDLSDNNI 378

GO:0007165 "signal transduction" evidence=IC

TAIR|locus:2037313 RLP13 "AT1G74170" [Arabidopsis thaliana (taxid:3702)]

 Score = 247 (92.0 bits), Expect = 9.9e-20, P = 9.9e-20
 Identities = 60/138 (43%), Positives = 79/138 (57%)

Query:     2 CELKNLFELNLKGNNVEGHLPNCLKYLSHLKVFDISQNQXXXXXXXXXXXXXXXEYLDLS 61
             C  KN+ EL L  N + G  P CL  L+ L+V D+S NQ               EYL L 
Sbjct:   255 CPWKNMEELKLSNNKLAGQFPLCLTSLTGLRVLDLSSNQLTGNVPSALANLESLEYLSLF 314

Query:    62 YNNFEGPCPLSLLAHHSKLEVLVL---SSTILVKTE-NFLPTFQLKELGLANCSLNVVPT 117
              NNFEG   L LLA+ SKL+VL L   S+++ V+ E ++ P FQL  + L +C+L  VP 
Sbjct:   315 GNNFEGFFSLGLLANLSKLKVLRLDSQSNSLEVEFETSWKPKFQLVVIALRSCNLEKVPH 374

Query:   118 FLLHQYDLKYLDLSHNNL 135
             FLLHQ DL ++DLS N +
Sbjct:   375 FLLHQKDLHHVDLSDNQI 392

GO:0007165 "signal transduction" evidence=IC

TAIR|locus:2155909 RLP56 "AT5G49290" [Arabidopsis thaliana (taxid:3702)]

 Score = 234 (87.4 bits), Expect = 2.1e-18, P = 2.1e-18
 Identities = 57/138 (41%), Positives = 78/138 (56%)

Query:     2 CELKNLFELNLKGNNVEGHLPNCLKYLSHLKVFDISQNQXXXXXXXXXXXXXXXEYLDLS 61
             CE+KNL EL+L+G N  G LP C   L+ L+  D+S NQ               EYL LS
Sbjct:   217 CEMKNLQELDLRGINFVGQLPLCFGNLNKLRFLDLSSNQLTGNIPPSFSSLESLEYLSLS 276

Query:    62 YNNFEGPCPLSLLAHHSKLEVLVLSST---ILVKTEN-FLPTFQLKELGLANCSLNVVPT 117
              N+FEG   L+ L + +KL+V + SS    + VK E+ + P FQL  L L  CSL  +P 
Sbjct:   277 DNSFEGFFSLNPLTNLTKLKVFIFSSKDDMVQVKIESTWQPLFQLSVLVLRLCSLEKIPN 336

Query:   118 FLLHQYDLKYLDLSHNNL 135
             FL++Q +L  +DLS N +
Sbjct:   337 FLMYQKNLHVVDLSGNRI 354

GO:0007165 "signal transduction" evidence=IC

TAIR|locus:2025012 RLP1 "AT1G07390" [Arabidopsis thaliana (taxid:3702)]

 Score = 225 (84.3 bits), Expect = 2.5e-17, P = 2.5e-17
 Identities = 59/141 (41%), Positives = 79/141 (56%)

Query:     1 LCELKNLFELNLKGNNVEGHLPNCLKYLSHLKVFDISQNQXXXXXXXXXXXX-XXXEYLD 59
             +C L  L EL+L  N +   LP CL  L+HL+  D+S NQ                EYL 
Sbjct:   354 ICRLMKLRELDLSSNALTS-LPYCLGNLTHLRTLDLSNNQLNGNLSSFVSGLPSVLEYLS 412

Query:    60 LSYNNFEGPCPLSLLAHHSKLEVLVLSS---TILVKTEN-FLPTFQLKELGLANCSL-NV 114
             L  NNF+G    + L + ++L V  LSS    I V+TE+ + P FQLK L L+NCSL + 
Sbjct:   413 LLDNNFDGSFLFNSLVNQTRLTVFKLSSKVGVIQVQTESSWAPLFQLKMLYLSNCSLGST 472

Query:   115 VPTFLLHQYDLKYLDLSHNNL 135
             +  FL+HQ DL ++DLSHN L
Sbjct:   473 MLGFLVHQRDLCFVDLSHNKL 493

GO:0005575 "cellular_component" evidence=ND

GO:0007165 "signal transduction" evidence=IC

GO:0006457 "protein folding" evidence=RCA

GO:0006857 "oligopeptide transport" evidence=RCA

GO:0009408 "response to heat" evidence=RCA

GO:0009644 "response to high light intensity" evidence=RCA

GO:0034976 "response to endoplasmic reticulum stress" evidence=RCA

GO:0042542 "response to hydrogen peroxide" evidence=RCA

TAIR|locus:2040075 RLP21 "AT2G25470" [Arabidopsis thaliana (taxid:3702)]

 Score = 193 (73.0 bits), Expect = 5.3e-14, P = 5.3e-14
 Identities = 53/138 (38%), Positives = 76/138 (55%)

Query:     2 CELKNLFELNLKGNNVEGHLPNCLKYLSHLKVFDISQNQXXXXXXXXXXXXXXXEYLDLS 61
             C+LKNL +L+LKGN+  G +P CL  L  L+V D+S NQ               EYL LS
Sbjct:   243 CKLKNLRDLDLKGNHFVGQIPLCLGSLKKLRVLDLSSNQLSGDLPSSFSSLESLEYLSLS 302

Query:    62 YNNFEGPCPLSLLAHHSKLE-VLVLSSTILVKTENFL---PTFQLKELGLANCSLNVVPT 117
              NNF+G   L+ L + + L+ V+VL    L K  +FL      +L +L   N S N+ PT
Sbjct:   303 DNNFDGSFSLNPLTNLTNLKFVVVLRFCSLEKIPSFLLYQKKLRLVDLSSNNLSGNI-PT 361

Query:   118 FLL-HQYDLKYLDLSHNN 134
             +LL +  +L+ L L +N+
Sbjct:   362 WLLTNNPELEVLQLQNNS 379

GO:0007165 "signal transduction" evidence=IC

GO:0009507 "chloroplast" evidence=IDA

TAIR|locus:2101943 RLP45 "AT3G53240" [Arabidopsis thaliana (taxid:3702)]

 Score = 190 (71.9 bits), Expect = 1.0e-13, P = 1.0e-13
 Identities = 50/141 (35%), Positives = 73/141 (51%)

Query:     1 LCELKNLFELNLKGNNVEGHLPNCLKYLSHLKVFDISQNQXXXXXXXXXXXXXXXEYLDL 60
             +C L+ L EL L  N  EG +P C    S L+V D+S N                EYL L
Sbjct:   174 ICRLEQLQELRLSRNRFEGEIPLCFSRFSKLRVLDLSSNHLSGKIPYFISDFKSMEYLSL 233

Query:    61 SYNNFEGPCPLSLLAHHSKLEVLVLSSTI----LVKTE--NFLPTFQLKELGLANCSLNV 114
               N+FEG   L L+   ++L+V  LSS      +V+T     L + QL  + L++C+L  
Sbjct:   234 LDNDFEGLFSLGLITELTELKVFKLSSRSGMLQIVETNVSGGLQS-QLSSIMLSHCNLGK 292

Query:   115 VPTFLLHQYDLKYLDLSHNNL 135
             +P FL +Q +L+ +DLS+N L
Sbjct:   293 IPGFLWYQQELRVIDLSNNIL 313

GO:0007165 "signal transduction" evidence=IC

TAIR|locus:2825384 RLP12 "AT1G71400" [Arabidopsis thaliana (taxid:3702)]

 Score = 143 (55.4 bits), Expect = 1.0e-08, P = 1.0e-08
 Identities = 43/136 (31%), Positives = 67/136 (49%)

Query:     6 NLFELNL---KGNNVEGHLPNCLKYLSHLKVFDISQNQXXXXXXXXXXXXXXXEYLDLSY 62
             NL EL +   + N++ G++P     L+ L +F +S N                EY D+SY
Sbjct:   252 NLIELRVMSFENNSLSGNIPISFANLTKLSIFVLSSNNFTSTFPFDMSIFHNLEYFDVSY 311

Query:    63 NNFEGPCPLSLLAHHSKLEVLVLSS---TILVKTENFLPTFQLKELGLANCSLN-VVPTF 118
             N+F GP P SLL   S LE + L     T  ++  N   + +L++L L    L+  +P  
Sbjct:   312 NSFSGPFPKSLLLIPS-LESIYLQENQFTGPIEFANTSSSTKLQDLILGRNRLHGPIPES 370

Query:   119 LLHQYDLKYLDLSHNN 134
             +    +L+ LD+SHNN
Sbjct:   371 ISRLLNLEELDISHNN 386

GO:0006952 "defense response" evidence=ISS

GO:0007165 "signal transduction" evidence=IC;RCA

GO:0002237 "response to molecule of bacterial origin" evidence=RCA

GO:0010103 "stomatal complex morphogenesis" evidence=RCA

GO:0010200 "response to chitin" evidence=RCA

GO:0048443 "stamen development" evidence=RCA

TAIR|locus:2121348 AT4G28380 [Arabidopsis thaliana (taxid:3702)]

 Score = 97 (39.2 bits), Expect = 1.1e-08, Sum P(2) = 1.1e-08
 Identities = 25/73 (34%), Positives = 33/73 (45%)

Query:     4 LKNLFELNLKGNNVEGHLPNCLKYLSHLKVFDISQNQXXXXXXXXXXXXXXXEYLDLSYN 63
             L +L  ++L  N   G LP     LS L   D+S N+               +YLDL YN
Sbjct:   113 LSDLALIHLNSNRFCGILPRSFANLSLLYELDLSNNRFVGPFPDVVLALPSLKYLDLRYN 172

Query:    64 NFEGPCPLSLLAH 76
              FEGP P  L ++
Sbjct:   173 EFEGPLPPKLFSN 185

GO:0005576 "extracellular region" evidence=ISM

GO:0007165 "signal transduction" evidence=IC

TAIR|locus:2094563 RLP36 "receptor like protein 36" [Arabidopsis thaliana (taxid:3702)]

 Score = 140 (54.3 bits), Expect = 1.3e-08, P = 1.3e-08
 Identities = 39/142 (27%), Positives = 68/142 (47%)

Query:     1 LCELKNLFELNLKGNNVEGHLPNCLKYLSHLKVFDISQNQXXXXXXXXXXXXXXXEYLDL 60
             +C++K+L+ L+L  N+  G +P CLKY ++    ++  N                  LD+
Sbjct:   233 ICKVKDLYALDLSNNHFNGSIPQCLKYSTYFHTLNLRNNSLSGVLPNLFIKDSQLRSLDV 292

Query:    61 SYNNFEGPCPLSLLAHHSKLEVLVLSSTILVKTENF----LPTFQLKELGLANCSLNVV- 115
             S NN  G  P SL+ +  ++E L +    ++ T  F    LP  ++  LG +N     V 
Sbjct:   293 SSNNLVGKLPKSLI-NCERIEFLNVKGNKIMDTFPFWLGSLPYLKVLMLG-SNAFYGPVY 350

Query:   116 -PTFLLHQYDLKYLDLSHNNLV 136
              P+  L    ++ +D+S+NN V
Sbjct:   351 NPSAYLGFPSIRIIDISNNNFV 372

GO:0005886 "plasma membrane" evidence=ISM

GO:0006952 "defense response" evidence=ISS

GO:0007165 "signal transduction" evidence=IC;RCA

GO:0002237 "response to molecule of bacterial origin" evidence=RCA

GO:0010103 "stomatal complex morphogenesis" evidence=RCA

GO:0048443 "stamen development" evidence=RCA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	136
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	1e-10
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	3e-10
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	4e-09
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	1e-08
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	3e-07
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	3e-07
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	5e-07
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	8e-07
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	2e-06
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	4e-06
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	5e-06
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	5e-05
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	3e-04
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	5e-04
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	5e-04

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 57.5 bits (139), Expect = 1e-10
 Identities = 27/64 (42%), Positives = 40/64 (62%)

Query: 10  LNLKGNNVEGHLPNCLKYLSHLKVFDISQNQLSGSLSSTITSLTSLEYLDLSYNNFEGPC 69
           L L    + G +PN +  L HL+  ++S N + G++  ++ S+TSLE LDLSYN+F G  
Sbjct: 423 LGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSI 482

Query: 70  PLSL 73
           P SL
Sbjct: 483 PESL 486

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 56.0 bits (135), Expect = 3e-10
 Identities = 26/70 (37%), Positives = 45/70 (64%)

Query: 4   LKNLFELNLKGNNVEGHLPNCLKYLSHLKVFDISQNQLSGSLSSTITSLTSLEYLDLSYN 63
           L++L  +NL GN++ G++P  L  ++ L+V D+S N  +GS+  ++  LTSL  L+L+ N
Sbjct: 441 LRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGN 500

Query: 64  NFEGPCPLSL 73
           +  G  P +L
Sbjct: 501 SLSGRVPAAL 510

Length = 623

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 53.3 bits (128), Expect = 4e-09
 Identities = 45/131 (34%), Positives = 72/131 (54%), Gaps = 7/131 (5%)

Query: 10  LNLKGNNVEGHLPNCLKYLSHLKVFDISQNQLSGSLSSTI-TSLTSLEYLDLSYNNFEGP 68
           ++L G N+ G + + +  L +++  ++S NQLSG +   I T+ +SL YL+LS NNF G 
Sbjct: 74  IDLSGKNISGKISSAIFRLPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNNNFTGS 133

Query: 69  CPLSLLAHHSKLEVLVLSSTILV-KTENFLPTF-QLKELGL-ANCSLNVVPTFLLHQYDL 125
            P   +     LE L LS+ +L  +  N + +F  LK L L  N  +  +P  L +   L
Sbjct: 134 IPRGSI---PNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSL 190

Query: 126 KYLDLSHNNLV 136
           ++L L+ N LV
Sbjct: 191 EFLTLASNQLV 201

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 51.8 bits (124), Expect = 1e-08
 Identities = 45/130 (34%), Positives = 65/130 (50%), Gaps = 8/130 (6%)

Query: 10  LNLKGNNVEGHLPNCLKYLSHLKVFDISQNQLSGSLSSTITSLTSLEYLDLSYNNFEGPC 69
           LNL  NN  G +P     + +L+  D+S N LSG + + I S +SL+ LDL  N   G  
Sbjct: 123 LNLSNNNFTGSIPR--GSIPNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKI 180

Query: 70  PLSLLAHHSKLEVLVLSSTILV----KTENFLPTFQLKELGLANCSLNVVPTFLLHQYDL 125
           P S L + + LE L L+S  LV    +    + + +   LG  N S   +P  +     L
Sbjct: 181 PNS-LTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLS-GEIPYEIGGLTSL 238

Query: 126 KYLDLSHNNL 135
            +LDL +NNL
Sbjct: 239 NHLDLVYNNL 248

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 47.9 bits (114), Expect = 3e-07
 Identities = 35/104 (33%), Positives = 47/104 (45%), Gaps = 25/104 (24%)

Query: 6   NLFELNLKGNNVEGHLPNCLKYLSHLKVFDISQNQ------------------------L 41
           +L  L+L GN + G +PN L  L+ L+   ++ NQ                        L
Sbjct: 165 SLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNL 224

Query: 42  SGSLSSTITSLTSLEYLDLSYNNFEGPCPLSLLAHHSKLEVLVL 85
           SG +   I  LTSL +LDL YNN  GP P S L +   L+ L L
Sbjct: 225 SGEIPYEIGGLTSLNHLDLVYNNLTGPIPSS-LGNLKNLQYLFL 267

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 47.5 bits (113), Expect = 3e-07
 Identities = 43/137 (31%), Positives = 63/137 (45%), Gaps = 3/137 (2%)

Query: 1   LCELKNLFELNLKGNNVEGHLPNCLKYLSHLKVFDISQNQLSGSLSSTITSLTSLEYLDL 60
           LC   NLF+L L  N++EG +P  L     L+   +  N  SG L S  T L  + +LD+
Sbjct: 376 LCSSGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGELPSEFTKLPLVYFLDI 435

Query: 61  SYNNFEGPCPLSLLAHHSKLEVLVLS-STILVKTENFLPTFQLKELGLA-NCSLNVVPTF 118
           S NN +G    S       L++L L+ +       +   + +L+ L L+ N     VP  
Sbjct: 436 SNNNLQGRIN-SRKWDMPSLQMLSLARNKFFGGLPDSFGSKRLENLDLSRNQFSGAVPRK 494

Query: 119 LLHQYDLKYLDLSHNNL 135
           L    +L  L LS N L
Sbjct: 495 LGSLSELMQLKLSENKL 511

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 47.2 bits (112), Expect = 5e-07
 Identities = 28/70 (40%), Positives = 41/70 (58%)

Query: 4   LKNLFELNLKGNNVEGHLPNCLKYLSHLKVFDISQNQLSGSLSSTITSLTSLEYLDLSYN 63
           + NL  L+L  N + G +PN +   S LKV D+  N L G + +++T+LTSLE+L L+ N
Sbjct: 139 IPNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASN 198

Query: 64  NFEGPCPLSL 73
              G  P  L
Sbjct: 199 QLVGQIPREL 208

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 46.4 bits (110), Expect = 8e-07
 Identities = 26/68 (38%), Positives = 35/68 (51%)

Query: 5   KNLFELNLKGNNVEGHLPNCLKYLSHLKVFDISQNQLSGSLSSTITSLTSLEYLDLSYNN 64
           K L  L+L  N   G +P  L  LS L    +S+N+LSG +   ++S   L  LDLS+N 
Sbjct: 475 KRLENLDLSRNQFSGAVPRKLGSLSELMQLKLSENKLSGEIPDELSSCKKLVSLDLSHNQ 534

Query: 65  FEGPCPLS 72
             G  P S
Sbjct: 535 LSGQIPAS 542

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 45.2 bits (107), Expect = 2e-06
 Identities = 23/70 (32%), Positives = 37/70 (52%)

Query: 1   LCELKNLFELNLKGNNVEGHLPNCLKYLSHLKVFDISQNQLSGSLSSTITSLTSLEYLDL 60
           L   K L  L+L  N + G +P     +  L   D+SQNQLSG +   + ++ SL  +++
Sbjct: 519 LSSCKKLVSLDLSHNQLSGQIPASFSEMPVLSQLDLSQNQLSGEIPKNLGNVESLVQVNI 578

Query: 61  SYNNFEGPCP 70
           S+N+  G  P
Sbjct: 579 SHNHLHGSLP 588

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 44.5 bits (105), Expect = 4e-06
 Identities = 44/135 (32%), Positives = 58/135 (42%), Gaps = 22/135 (16%)

Query: 1   LCELKNLFELNLKGNNVEGHLPNCLKYLSHLKVFDISQNQLSGSLSSTITSLTSLEYLDL 60
           L  LKNL  L L  N + G +P  +  L  L   D+S N LSG +   +  L +LE L L
Sbjct: 256 LGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQNLEILHL 315

Query: 61  SYNNFEGPCPLSLLAHHSKLEVLVLSSTILVKTENFLPTFQLKELGLANCSLNVVPTFLL 120
             NNF G  P++L +                     LP  Q+ +L     S   +P  L 
Sbjct: 316 FSNNFTGKIPVALTS---------------------LPRLQVLQLWSNKFS-GEIPKNLG 353

Query: 121 HQYDLKYLDLSHNNL 135
              +L  LDLS NNL
Sbjct: 354 KHNNLTVLDLSTNNL 368

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 44.1 bits (104), Expect = 5e-06
 Identities = 25/70 (35%), Positives = 36/70 (51%)

Query: 4   LKNLFELNLKGNNVEGHLPNCLKYLSHLKVFDISQNQLSGSLSSTITSLTSLEYLDLSYN 63
           L  L +L L  N + G +P+ L     L   D+S NQLSG + ++ + +  L  LDLS N
Sbjct: 498 LSELMQLKLSENKLSGEIPDELSSCKKLVSLDLSHNQLSGQIPASFSEMPVLSQLDLSQN 557

Query: 64  NFEGPCPLSL 73
              G  P +L
Sbjct: 558 QLSGEIPKNL 567

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 41.4 bits (97), Expect = 5e-05
 Identities = 26/73 (35%), Positives = 37/73 (50%)

Query: 1   LCELKNLFELNLKGNNVEGHLPNCLKYLSHLKVFDISQNQLSGSLSSTITSLTSLEYLDL 60
           + +L+NL  L+L  NN  G +P  L  L  L+V  +  N+ SG +   +    +L  LDL
Sbjct: 304 VIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDL 363

Query: 61  SYNNFEGPCPLSL 73
           S NN  G  P  L
Sbjct: 364 STNNLTGEIPEGL 376

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 39.1 bits (91), Expect = 3e-04
 Identities = 34/109 (31%), Positives = 50/109 (45%), Gaps = 1/109 (0%)

Query: 29  SHLKVFDISQNQLSGSLSSTITSLTSLEYLDLSYNNFEGPCPLSLLAHHSKLEVLVLSST 88
           S +   D+S   +SG +SS I  L  ++ ++LS N   GP P  +    S L  L LS+ 
Sbjct: 69  SRVVSIDLSGKNISGKISSAIFRLPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNN 128

Query: 89  ILVKTENFLPTFQLKELGLANCSLN-VVPTFLLHQYDLKYLDLSHNNLV 136
               +        L+ L L+N  L+  +P  +     LK LDL  N LV
Sbjct: 129 NFTGSIPRGSIPNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLV 177

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 38.3 bits (89), Expect = 5e-04
 Identities = 24/71 (33%), Positives = 36/71 (50%), Gaps = 1/71 (1%)

Query: 3   ELKNLFELNLKGNNVEGHLPNCLKYLSHLKVFDISQNQLSGSLSSTITSLTSLEYLDLSY 62
           ++ +L  L+L  N   G LP+       L+  D+S+NQ SG++   + SL+ L  L LS 
Sbjct: 450 DMPSLQMLSLARNKFFGGLPDSFGS-KRLENLDLSRNQFSGAVPRKLGSLSELMQLKLSE 508

Query: 63  NNFEGPCPLSL 73
           N   G  P  L
Sbjct: 509 NKLSGEIPDEL 519

Length = 968

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 35.6 bits (83), Expect = 5e-04
 Identities = 23/60 (38%), Positives = 29/60 (48%)

Query: 6  NLFELNLKGNNVEGHLPNCLKYLSHLKVFDISQNQLSGSLSSTITSLTSLEYLDLSYNNF 65
          NL  L+L  N +        K L +LKV D+S N L+       + L SL  LDLS NN 
Sbjct: 1  NLKSLDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGNNL 60

Length = 60

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	136
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	99.74
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	99.73
KOG0617	264	consensus Ras suppressor protein (contains leucine	99.72
KOG4194	873	consensus Membrane glycoprotein LIG-1 [Signal tran	99.69
KOG0617	264	consensus Ras suppressor protein (contains leucine	99.6
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	99.59
KOG4194	873	consensus Membrane glycoprotein LIG-1 [Signal tran	99.58
KOG0444	1255	consensus Cytoskeletal regulator Flightless-I (con	99.47
KOG1259	490	consensus Nischarin, modulator of integrin alpha5	99.46
KOG0472	565	consensus Leucine-rich repeat protein [Function un	99.43
KOG0472	565	consensus Leucine-rich repeat protein [Function un	99.38
KOG4237	498	consensus Extracellular matrix protein slit, conta	99.35
KOG0444	1255	consensus Cytoskeletal regulator Flightless-I (con	99.35
PLN03150	623	hypothetical protein; Provisional	99.33
KOG0618	1081	consensus Serine/threonine phosphatase 2C containi	99.32
KOG0532	722	consensus Leucine-rich repeat (LRR) protein, conta	99.31
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	99.3
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	99.3
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	99.3
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	99.28
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	99.22
PLN03150	623	hypothetical protein; Provisional	99.21
KOG0618	1081	consensus Serine/threonine phosphatase 2C containi	99.21
KOG4237	498	consensus Extracellular matrix protein slit, conta	99.16
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	99.14
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	99.13
PLN03210	1153	Resistant to P. syringae 6; Provisional	99.11
KOG1909	382	consensus Ran GTPase-activating protein [RNA proce	99.1
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	99.08
PLN03210	1153	Resistant to P. syringae 6; Provisional	99.08
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	99.05
KOG0532	722	consensus Leucine-rich repeat (LRR) protein, conta	99.0
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	98.97
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	98.96
KOG1909	382	consensus Ran GTPase-activating protein [RNA proce	98.81
COG5238	388	RNA1 Ran GTPase-activating protein (RanGAP) involv	98.78
KOG1859	1096	consensus Leucine-rich repeat proteins [General fu	98.77
KOG1259	490	consensus Nischarin, modulator of integrin alpha5	98.76
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	98.75
KOG1644	233	consensus U2-associated snRNP A' protein [RNA proc	98.73
KOG1644	233	consensus U2-associated snRNP A' protein [RNA proc	98.71
KOG0531	414	consensus Protein phosphatase 1, regulatory subuni	98.71
KOG3207	505	consensus Beta-tubulin folding cofactor E [Posttra	98.7
KOG3207	505	consensus Beta-tubulin folding cofactor E [Posttra	98.66
KOG0531	414	consensus Protein phosphatase 1, regulatory subuni	98.62
KOG4579	177	consensus Leucine-rich repeat (LRR) protein associ	98.56
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	98.49
KOG4658	889	consensus Apoptotic ATPase [Signal transduction me	98.42
KOG2982	418	consensus Uncharacterized conserved protein [Funct	98.36
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	98.35
KOG4658	889	consensus Apoptotic ATPase [Signal transduction me	98.31
KOG1859	1096	consensus Leucine-rich repeat proteins [General fu	98.3
KOG4579	177	consensus Leucine-rich repeat (LRR) protein associ	98.25
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	98.19
KOG2739	260	consensus Leucine-rich acidic nuclear protein [Cel	98.14
COG5238	388	RNA1 Ran GTPase-activating protein (RanGAP) involv	98.14
KOG2982	418	consensus Uncharacterized conserved protein [Funct	98.05
PF13306	129	LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_	98.02
KOG2120	419	consensus SCF ubiquitin ligase, Skp2 component [Po	97.97
KOG2120	419	consensus SCF ubiquitin ligase, Skp2 component [Po	97.97
PRK15386	426	type III secretion protein GogB; Provisional	97.53
KOG2739	260	consensus Leucine-rich acidic nuclear protein [Cel	97.35
KOG2123	388	consensus Uncharacterized conserved protein [Funct	97.34
KOG2123	388	consensus Uncharacterized conserved protein [Funct	97.29
PF13306	129	LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_	97.05
PRK15386	426	type III secretion protein GogB; Provisional	96.96
PF00560	22	LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le	96.83
PF13504	17	LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OO	96.43
KOG1947	482	consensus Leucine rich repeat proteins, some prote	95.75
PF13516	24	LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RI	95.21
smart00370	26	LRR Leucine-rich repeats, outliers.	95.11
smart00369	26	LRR_TYP Leucine-rich repeats, typical (most popula	95.11
KOG3864	221	consensus Uncharacterized conserved protein [Funct	93.58
KOG4341	483	consensus F-box protein containing LRR [General fu	93.52
KOG3864	221	consensus Uncharacterized conserved protein [Funct	93.09
KOG1947	482	consensus Leucine rich repeat proteins, some prote	92.91
smart00368	28	LRR_RI Leucine rich repeat, ribonuclease inhibitor	91.92
smart00364	26	LRR_BAC Leucine-rich repeats, bacterial type.	91.75
smart00365	26	LRR_SD22 Leucine-rich repeat, SDS22-like subfamily	89.99
KOG4308	478	consensus LRR-containing protein [Function unknown	88.9
KOG3763	585	consensus mRNA export factor TAP/MEX67 [RNA proces	87.88
KOG4341	483	consensus F-box protein containing LRR [General fu	87.33
KOG0473	326	consensus Leucine-rich repeat protein [Function un	87.13
KOG0473	326	consensus Leucine-rich repeat protein [Function un	82.72

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=99.74  E-value=2e-17  Score=122.12  Aligned_cols=62  Identities=40%  Similarity=0.623  Sum_probs=27.3

Q ss_pred             CcccEEEcCCCcccccCcccccCCCcccEEEccCCccccccchhhhccCCCCEEEccCCcCc
Q 039528            5 KNLFELNLKGNNVEGHLPNCLKYLSHLKVFDISQNQLSGSLSSTITSLTSLEYLDLSYNNFE   66 (136)
Q Consensus         5 ~~L~~l~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~   66 (136)
                      ++|++|++++|.+.+..|..+..+++|++|++++|.+.+..|..+..+++|++|++++|.+.
T Consensus       140 ~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~  201 (968)
T PLN00113        140 PNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLV  201 (968)
T ss_pred             CCCCEEECcCCcccccCChHHhcCCCCCEEECccCcccccCChhhhhCcCCCeeeccCCCCc
Confidence            34444444444444444444444444444444444443334444444444444444444443

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=99.73  E-value=3.8e-17  Score=120.72  Aligned_cols=132  Identities=30%  Similarity=0.430  Sum_probs=82.9

Q ss_pred             CCCcccEEEcCCCcccccCcccccCCCcccEEEccCCccccccchhhhccCCCCEEEccCCcCcCCCChHhhhcCccceE
Q 039528            3 ELKNLFELNLKGNNVEGHLPNCLKYLSHLKVFDISQNQLSGSLSSTITSLTSLEYLDLSYNNFEGPCPLSLLAHHSKLEV   82 (136)
Q Consensus         3 ~l~~L~~l~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~~l~~   82 (136)
                      .+++|++|++++|.+.+..|..+.++++|++|++++|.+.+..|..+..+.+|++|++++|.+.+..|.. +..+++|++
T Consensus       162 ~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~-l~~l~~L~~  240 (968)
T PLN00113        162 SFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYE-IGGLTSLNH  240 (968)
T ss_pred             cCCCCCEEECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCccCCcCChh-HhcCCCCCE
Confidence            4556666666666666666666666666666666666666566666666666666666666666555543 556666666


Q ss_pred             EEeccceeeec-c-CCCCCccccEEEcCCCCC-CCCChhhhcCCCCcEEEcCCCcC
Q 039528           83 LVLSSTILVKT-E-NFLPTFQLKELGLANCSL-NVVPTFLLHQYDLKYLDLSHNNL  135 (136)
Q Consensus        83 l~l~~~~~~~~-~-~~~~~~~L~~l~l~~n~~-~~~~~~~~~~~~L~~l~l~~n~l  135 (136)
                      +++++|.+... + .+..+++|++|++++|.+ +.+|..+..+++|+.|++++|.+
T Consensus       241 L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l  296 (968)
T PLN00113        241 LDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSL  296 (968)
T ss_pred             EECcCceeccccChhHhCCCCCCEEECcCCeeeccCchhHhhccCcCEEECcCCee
Confidence            66666654321 1 344555666666666666 45666666666666666666654

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]

Probab=99.72  E-value=4.6e-20  Score=109.08  Aligned_cols=131  Identities=30%  Similarity=0.401  Sum_probs=100.0

Q ss_pred             CCCcccEEEcCCCcccccCcccccCCCcccEEEccCCccccccchhhhccCCCCEEEccCCcCcC-CCChHhhhcCccce
Q 039528            3 ELKNLFELNLKGNNVEGHLPNCLKYLSHLKVFDISQNQLSGSLSSTITSLTSLEYLDLSYNNFEG-PCPLSLLAHHSKLE   81 (136)
Q Consensus         3 ~l~~L~~l~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~-~~~~~~~~~~~~l~   81 (136)
                      .+.+|+.+++++|++. .+|..++.+++|+.|+++.|.+. ..|.+|+.++-|+.||++.|.+.. .+|.. |..+..|+
T Consensus        54 ~l~nlevln~~nnqie-~lp~~issl~klr~lnvgmnrl~-~lprgfgs~p~levldltynnl~e~~lpgn-ff~m~tlr  130 (264)
T KOG0617|consen   54 ELKNLEVLNLSNNQIE-ELPTSISSLPKLRILNVGMNRLN-ILPRGFGSFPALEVLDLTYNNLNENSLPGN-FFYMTTLR  130 (264)
T ss_pred             Hhhhhhhhhcccchhh-hcChhhhhchhhhheecchhhhh-cCccccCCCchhhhhhccccccccccCCcc-hhHHHHHH
Confidence            4566777777788777 67777778888888888777776 777788888888888888777743 34544 44677777


Q ss_pred             EEEeccceeeecc-CCCCCccccEEEcCCCCCCCCChhhhcCCCCcEEEcCCCcCC
Q 039528           82 VLVLSSTILVKTE-NFLPTFQLKELGLANCSLNVVPTFLLHQYDLKYLDLSHNNLV  136 (136)
Q Consensus        82 ~l~l~~~~~~~~~-~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~L~~l~l~~n~l~  136 (136)
                      .+.+++|.+.-.+ ..+.+++|+.|.+++|.+-++|..++.+..|+.|++++|.++
T Consensus       131 alyl~dndfe~lp~dvg~lt~lqil~lrdndll~lpkeig~lt~lrelhiqgnrl~  186 (264)
T KOG0617|consen  131 ALYLGDNDFEILPPDVGKLTNLQILSLRDNDLLSLPKEIGDLTRLRELHIQGNRLT  186 (264)
T ss_pred             HHHhcCCCcccCChhhhhhcceeEEeeccCchhhCcHHHHHHHHHHHHhcccceee
Confidence            7777777665543 567778899999999998888999999999999999988764

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]

Probab=99.69  E-value=4.9e-18  Score=116.19  Aligned_cols=132  Identities=26%  Similarity=0.304  Sum_probs=103.9

Q ss_pred             CCCcccEEEcCCCcccccCcccccCCCcccEEEccCCccccccchhhhccCCCCEEEccCCcCcCCCChHhhhcCccceE
Q 039528            3 ELKNLFELNLKGNNVEGHLPNCLKYLSHLKVFDISQNQLSGSLSSTITSLTSLEYLDLSYNNFEGPCPLSLLAHHSKLEV   82 (136)
Q Consensus         3 ~l~~L~~l~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~~l~~   82 (136)
                      +++.|+.|++++|.|...-++...-+++|++|++++|+++...++.|..+..|+.|.+++|+++ .+...++.++++|+.
T Consensus       291 gLt~L~~L~lS~NaI~rih~d~WsftqkL~~LdLs~N~i~~l~~~sf~~L~~Le~LnLs~Nsi~-~l~e~af~~lssL~~  369 (873)
T KOG4194|consen  291 GLTSLEQLDLSYNAIQRIHIDSWSFTQKLKELDLSSNRITRLDEGSFRVLSQLEELNLSHNSID-HLAEGAFVGLSSLHK  369 (873)
T ss_pred             ccchhhhhccchhhhheeecchhhhcccceeEeccccccccCChhHHHHHHHhhhhcccccchH-HHHhhHHHHhhhhhh
Confidence            5677778888888887766777777888888888888887666777777888888888888886 455567788888888


Q ss_pred             EEecccee---eec--cCCCCCccccEEEcCCCCCCCCCh-hhhcCCCCcEEEcCCCcC
Q 039528           83 LVLSSTIL---VKT--ENFLPTFQLKELGLANCSLNVVPT-FLLHQYDLKYLDLSHNNL  135 (136)
Q Consensus        83 l~l~~~~~---~~~--~~~~~~~~L~~l~l~~n~~~~~~~-~~~~~~~L~~l~l~~n~l  135 (136)
                      ||+..|.+   .++  .++..+++|+.|++.+|++.++|. ++..+..|+.||+.+|.+
T Consensus       370 LdLr~N~ls~~IEDaa~~f~gl~~LrkL~l~gNqlk~I~krAfsgl~~LE~LdL~~Nai  428 (873)
T KOG4194|consen  370 LDLRSNELSWCIEDAAVAFNGLPSLRKLRLTGNQLKSIPKRAFSGLEALEHLDLGDNAI  428 (873)
T ss_pred             hcCcCCeEEEEEecchhhhccchhhhheeecCceeeecchhhhccCcccceecCCCCcc
Confidence            88888765   222  256778899999999999988885 888999999999999876

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]

Probab=99.60  E-value=3e-17  Score=97.27  Aligned_cols=128  Identities=28%  Similarity=0.437  Sum_probs=112.6

Q ss_pred             CCcccEEEcCCCcccccCcccccCCCcccEEEccCCccccccchhhhccCCCCEEEccCCcCcCCCChHhhhcCccceEE
Q 039528            4 LKNLFELNLKGNNVEGHLPNCLKYLSHLKVFDISQNQLSGSLSSTITSLTSLEYLDLSYNNFEGPCPLSLLAHHSKLEVL   83 (136)
Q Consensus         4 l~~L~~l~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~~l~~l   83 (136)
                      +..++.+.++.|.++ ..|+.+..+.+|+.|++.+|+++ .+|..++.+++|++|+++.|++. ..|.. |+++|.|+.+
T Consensus        32 ~s~ITrLtLSHNKl~-~vppnia~l~nlevln~~nnqie-~lp~~issl~klr~lnvgmnrl~-~lprg-fgs~p~levl  107 (264)
T KOG0617|consen   32 MSNITRLTLSHNKLT-VVPPNIAELKNLEVLNLSNNQIE-ELPTSISSLPKLRILNVGMNRLN-ILPRG-FGSFPALEVL  107 (264)
T ss_pred             hhhhhhhhcccCcee-ecCCcHHHhhhhhhhhcccchhh-hcChhhhhchhhhheecchhhhh-cCccc-cCCCchhhhh
Confidence            345667889999999 67888899999999999999998 78999999999999999999997 67765 9999999999


Q ss_pred             Eeccceeeec---cCCCCCccccEEEcCCCCCCCCChhhhcCCCCcEEEcCCCcC
Q 039528           84 VLSSTILVKT---ENFLPTFQLKELGLANCSLNVVPTFLLHQYDLKYLDLSHNNL  135 (136)
Q Consensus        84 ~l~~~~~~~~---~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~L~~l~l~~n~l  135 (136)
                      |+++|...+.   +.+..+..|+.|++++|.+..+|..++++++|+.|.+..|.+
T Consensus       108 dltynnl~e~~lpgnff~m~tlralyl~dndfe~lp~dvg~lt~lqil~lrdndl  162 (264)
T KOG0617|consen  108 DLTYNNLNENSLPGNFFYMTTLRALYLGDNDFEILPPDVGKLTNLQILSLRDNDL  162 (264)
T ss_pred             hccccccccccCCcchhHHHHHHHHHhcCCCcccCChhhhhhcceeEEeeccCch
Confidence            9999776443   356677799999999999999999999999999999998875

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=99.59  E-value=3.5e-15  Score=89.80  Aligned_cols=122  Identities=28%  Similarity=0.333  Sum_probs=53.6

Q ss_pred             CCcccEEEcCCCcccccCccccc-CCCcccEEEccCCccccccchhhhccCCCCEEEccCCcCcCCCChHhhhcCccceE
Q 039528            4 LKNLFELNLKGNNVEGHLPNCLK-YLSHLKVFDISQNQLSGSLSSTITSLTSLEYLDLSYNNFEGPCPLSLLAHHSKLEV   82 (136)
Q Consensus         4 l~~L~~l~l~~~~l~~~~~~~~~-~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~~l~~   82 (136)
                      ...+++|++.+|.++. + +.+. .+.+|+.|++++|.++..  +++..+++|+.|++++|+++ .++......+++|++
T Consensus        18 ~~~~~~L~L~~n~I~~-I-e~L~~~l~~L~~L~Ls~N~I~~l--~~l~~L~~L~~L~L~~N~I~-~i~~~l~~~lp~L~~   92 (175)
T PF14580_consen   18 PVKLRELNLRGNQIST-I-ENLGATLDKLEVLDLSNNQITKL--EGLPGLPRLKTLDLSNNRIS-SISEGLDKNLPNLQE   92 (175)
T ss_dssp             --------------------S--TT-TT--EEE-TTS--S----TT----TT--EEE--SS----S-CHHHHHH-TT--E
T ss_pred             cccccccccccccccc-c-cchhhhhcCCCEEECCCCCCccc--cCccChhhhhhcccCCCCCC-ccccchHHhCCcCCE
Confidence            4457899999999984 3 3344 578999999999999843  46788999999999999998 565444457899999


Q ss_pred             EEeccceeeeccC---CCCCccccEEEcCCCCCCCCCh----hhhcCCCCcEEEc
Q 039528           83 LVLSSTILVKTEN---FLPTFQLKELGLANCSLNVVPT----FLLHQYDLKYLDL  130 (136)
Q Consensus        83 l~l~~~~~~~~~~---~~~~~~L~~l~l~~n~~~~~~~----~~~~~~~L~~l~l  130 (136)
                      +++++|.+.+...   ...+++|+.|++.+|++.+.+.    .++.+|+|+.||-
T Consensus        93 L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk~LD~  147 (175)
T PF14580_consen   93 LYLSNNKISDLNELEPLSSLPKLRVLSLEGNPVCEKKNYRLFVIYKLPSLKVLDG  147 (175)
T ss_dssp             EE-TTS---SCCCCGGGGG-TT--EEE-TT-GGGGSTTHHHHHHHH-TT-SEETT
T ss_pred             EECcCCcCCChHHhHHHHcCCCcceeeccCCcccchhhHHHHHHHHcChhheeCC
Confidence            9999998876653   3567799999999999965554    6889999999884

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]

Probab=99.58  E-value=1.6e-15  Score=104.15  Aligned_cols=132  Identities=27%  Similarity=0.366  Sum_probs=93.1

Q ss_pred             CCCCcccEEEcCCCcccccCcccccCCCcccEEEccCCccccccchhhhccCCCCEEEccCCcCcCCCChHhhhcCccce
Q 039528            2 CELKNLFELNLKGNNVEGHLPNCLKYLSHLKVFDISQNQLSGSLSSTITSLTSLEYLDLSYNNFEGPCPLSLLAHHSKLE   81 (136)
Q Consensus         2 ~~l~~L~~l~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~~l~   81 (136)
                      .++++|+++.+.+|.++ .+|.......+++.|++.+|.|+..-.+.+..++.++.+|+++|.++ .++...+..-.+++
T Consensus        99 ~nl~nLq~v~l~~N~Lt-~IP~f~~~sghl~~L~L~~N~I~sv~se~L~~l~alrslDLSrN~is-~i~~~sfp~~~ni~  176 (873)
T KOG4194|consen   99 YNLPNLQEVNLNKNELT-RIPRFGHESGHLEKLDLRHNLISSVTSEELSALPALRSLDLSRNLIS-EIPKPSFPAKVNIK  176 (873)
T ss_pred             hcCCcceeeeeccchhh-hcccccccccceeEEeeeccccccccHHHHHhHhhhhhhhhhhchhh-cccCCCCCCCCCce
Confidence            34555555555555555 44443333444666666666665555566677778888888888887 55655566667788


Q ss_pred             EEEeccceeeecc--CCCCCccccEEEcCCCCCCCCCh-hhhcCCCCcEEEcCCCcC
Q 039528           82 VLVLSSTILVKTE--NFLPTFQLKELGLANCSLNVVPT-FLLHQYDLKYLDLSHNNL  135 (136)
Q Consensus        82 ~l~l~~~~~~~~~--~~~~~~~L~~l~l~~n~~~~~~~-~~~~~~~L~~l~l~~n~l  135 (136)
                      +|+++.|.+++.+  .|..+.+|.+|.+++|+++.+|. .|+.+++|+.|++.-|.+
T Consensus       177 ~L~La~N~It~l~~~~F~~lnsL~tlkLsrNrittLp~r~Fk~L~~L~~LdLnrN~i  233 (873)
T KOG4194|consen  177 KLNLASNRITTLETGHFDSLNSLLTLKLSRNRITTLPQRSFKRLPKLESLDLNRNRI  233 (873)
T ss_pred             EEeeccccccccccccccccchheeeecccCcccccCHHHhhhcchhhhhhccccce
Confidence            8888888887775  56666689999999999988886 566699999999887765

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]

Probab=99.47  E-value=1.1e-14  Score=101.36  Aligned_cols=130  Identities=31%  Similarity=0.435  Sum_probs=91.6

Q ss_pred             CCcccEEEcCCCcccccCcccccCCCcccEEEccCCccccccchhhhccCCCCEEEccCCcCcCCCChHhhhcCccceEE
Q 039528            4 LKNLFELNLKGNNVEGHLPNCLKYLSHLKVFDISQNQLSGSLSSTITSLTSLEYLDLSYNNFEGPCPLSLLAHHSKLEVL   83 (136)
Q Consensus         4 l~~L~~l~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~~l~~l   83 (136)
                      +..|..||++.|.+. +.|..+.....+-.|++++|+|..+...-+-++..|.+||+++|++. .+|.+ ...+..|+++
T Consensus       102 l~dLt~lDLShNqL~-EvP~~LE~AKn~iVLNLS~N~IetIPn~lfinLtDLLfLDLS~NrLe-~LPPQ-~RRL~~LqtL  178 (1255)
T KOG0444|consen  102 LKDLTILDLSHNQLR-EVPTNLEYAKNSIVLNLSYNNIETIPNSLFINLTDLLFLDLSNNRLE-MLPPQ-IRRLSMLQTL  178 (1255)
T ss_pred             cccceeeecchhhhh-hcchhhhhhcCcEEEEcccCccccCCchHHHhhHhHhhhccccchhh-hcCHH-HHHHhhhhhh
Confidence            556777788888777 67777777777777777777776443344556777778888888776 55544 6667777777


Q ss_pred             Eeccceeeecc---------------------------CCCCCccccEEEcCCCCCCCCChhhhcCCCCcEEEcCCCcCC
Q 039528           84 VLSSTILVKTE---------------------------NFLPTFQLKELGLANCSLNVVPTFLLHQYDLKYLDLSHNNLV  136 (136)
Q Consensus        84 ~l~~~~~~~~~---------------------------~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~L~~l~l~~n~l~  136 (136)
                      ++++|+.....                           ....+.+|..++++.|.+..+|+.++.+++|+.|++|+|.++
T Consensus       179 ~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N~Lp~vPecly~l~~LrrLNLS~N~it  258 (1255)
T KOG0444|consen  179 KLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSENNLPIVPECLYKLRNLRRLNLSGNKIT  258 (1255)
T ss_pred             hcCCChhhHHHHhcCccchhhhhhhcccccchhhcCCCchhhhhhhhhccccccCCCcchHHHhhhhhhheeccCcCcee
Confidence            77776542211                           112223667778888888889999999999999999999874

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]

Probab=99.46  E-value=5.4e-15  Score=94.74  Aligned_cols=128  Identities=23%  Similarity=0.308  Sum_probs=108.9

Q ss_pred             CCcccEEEcCCCcccccCcccccCCCcccEEEccCCccccccchhhhccCCCCEEEccCCcCcCCCChHhhhcCccceEE
Q 039528            4 LKNLFELNLKGNNVEGHLPNCLKYLSHLKVFDISQNQLSGSLSSTITSLTSLEYLDLSYNNFEGPCPLSLLAHHSKLEVL   83 (136)
Q Consensus         4 l~~L~~l~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~~l~~l   83 (136)
                      +..|+++|+++|.++ .+..++.-.|.++.|+++.|.+...  +.+..+++|+.||+++|.++ .+..+ -..+.+++++
T Consensus       283 Wq~LtelDLS~N~I~-~iDESvKL~Pkir~L~lS~N~i~~v--~nLa~L~~L~~LDLS~N~Ls-~~~Gw-h~KLGNIKtL  357 (490)
T KOG1259|consen  283 WQELTELDLSGNLIT-QIDESVKLAPKLRRLILSQNRIRTV--QNLAELPQLQLLDLSGNLLA-ECVGW-HLKLGNIKTL  357 (490)
T ss_pred             Hhhhhhccccccchh-hhhhhhhhccceeEEeccccceeee--hhhhhcccceEeecccchhH-hhhhh-HhhhcCEeee
Confidence            456889999999999 7888888899999999999998743  55888999999999999997 44433 4457889999


Q ss_pred             EeccceeeeccCCCCCccccEEEcCCCCCCCCC--hhhhcCCCCcEEEcCCCcCC
Q 039528           84 VLSSTILVKTENFLPTFQLKELGLANCSLNVVP--TFLLHQYDLKYLDLSHNNLV  136 (136)
Q Consensus        84 ~l~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~--~~~~~~~~L~~l~l~~n~l~  136 (136)
                      .+++|.+.+......+.+|..|++.+|+|..+.  ..+++++.|+.+.+.+|+++
T Consensus       358 ~La~N~iE~LSGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~  412 (490)
T KOG1259|consen  358 KLAQNKIETLSGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPLA  412 (490)
T ss_pred             ehhhhhHhhhhhhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCCcc
Confidence            999999988887888889999999999996554  37899999999999999874

>KOG0472 consensus Leucine-rich repeat protein [Function unknown]

Probab=99.43  E-value=8.1e-16  Score=101.44  Aligned_cols=126  Identities=28%  Similarity=0.327  Sum_probs=83.1

Q ss_pred             cccEEEcCCCcccccCcccccCCCcccEEEccCCccccccchhhhccCCCCEEEccCCcCcCCCChHhhhcCccceEEEe
Q 039528            6 NLFELNLKGNNVEGHLPNCLKYLSHLKVFDISQNQLSGSLSSTITSLTSLEYLDLSYNNFEGPCPLSLLAHHSKLEVLVL   85 (136)
Q Consensus         6 ~L~~l~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~~l~~l~l   85 (136)
                      ++..+++.+|.+....|..+ ++.+|++++..+|-+. .+|+.++.+.+|..|++.+|++. +.| + |.++..|.++++
T Consensus       161 ~l~~l~~~~n~l~~l~~~~i-~m~~L~~ld~~~N~L~-tlP~~lg~l~~L~~LyL~~Nki~-~lP-e-f~gcs~L~Elh~  235 (565)
T KOG0472|consen  161 KLSKLDLEGNKLKALPENHI-AMKRLKHLDCNSNLLE-TLPPELGGLESLELLYLRRNKIR-FLP-E-FPGCSLLKELHV  235 (565)
T ss_pred             HHHHhhccccchhhCCHHHH-HHHHHHhcccchhhhh-cCChhhcchhhhHHHHhhhcccc-cCC-C-CCccHHHHHHHh
Confidence            34445555565553223332 3666666666666554 66667777777777777777776 555 2 666667777777


Q ss_pred             ccceeeeccC--CCCCccccEEEcCCCCCCCCChhhhcCCCCcEEEcCCCcCC
Q 039528           86 SSTILVKTEN--FLPTFQLKELGLANCSLNVVPTFLLHQYDLKYLDLSHNNLV  136 (136)
Q Consensus        86 ~~~~~~~~~~--~~~~~~L~~l~l~~n~~~~~~~~~~~~~~L~~l~l~~n~l~  136 (136)
                      +.|.+...++  ...+.++.+||++.|++.++|..+..+++|++||+|+|.++
T Consensus       236 g~N~i~~lpae~~~~L~~l~vLDLRdNklke~Pde~clLrsL~rLDlSNN~is  288 (565)
T KOG0472|consen  236 GENQIEMLPAEHLKHLNSLLVLDLRDNKLKEVPDEICLLRSLERLDLSNNDIS  288 (565)
T ss_pred             cccHHHhhHHHHhcccccceeeeccccccccCchHHHHhhhhhhhcccCCccc
Confidence            7776655542  24566777888888888888887777888888888887764

>KOG0472 consensus Leucine-rich repeat protein [Function unknown]

Probab=99.38  E-value=8.1e-14  Score=92.20  Aligned_cols=114  Identities=30%  Similarity=0.406  Sum_probs=84.9

Q ss_pred             cCcccccCCCcccEEEccCCccccccchhhhccCCCCEEEccCCcCcCCCChHhhhcCccceEEEeccceeeecc--CCC
Q 039528           20 HLPNCLKYLSHLKVFDISQNQLSGSLSSTITSLTSLEYLDLSYNNFEGPCPLSLLAHHSKLEVLVLSSTILVKTE--NFL   97 (136)
Q Consensus        20 ~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~--~~~   97 (136)
                      ..|..++.+++|..|++++|.+. -+|..++.+..||.++++.|+|. -+|. ....+..++++-.++|.+...+  ...
T Consensus       426 fv~~~l~~l~kLt~L~L~NN~Ln-~LP~e~~~lv~Lq~LnlS~NrFr-~lP~-~~y~lq~lEtllas~nqi~~vd~~~l~  502 (565)
T KOG0472|consen  426 FVPLELSQLQKLTFLDLSNNLLN-DLPEEMGSLVRLQTLNLSFNRFR-MLPE-CLYELQTLETLLASNNQIGSVDPSGLK  502 (565)
T ss_pred             cchHHHHhhhcceeeecccchhh-hcchhhhhhhhhheecccccccc-cchH-HHhhHHHHHHHHhccccccccChHHhh
Confidence            45556677778888888887776 56777777777888888888776 4553 3444444555555555554443  346


Q ss_pred             CCccccEEEcCCCCCCCCChhhhcCCCCcEEEcCCCcCC
Q 039528           98 PTFQLKELGLANCSLNVVPTFLLHQYDLKYLDLSHNNLV  136 (136)
Q Consensus        98 ~~~~L~~l~l~~n~~~~~~~~~~~~~~L~~l~l~~n~l~  136 (136)
                      .+..|.+|++.+|.+.++|..+++|.++++|++++|+|.
T Consensus       503 nm~nL~tLDL~nNdlq~IPp~LgnmtnL~hLeL~gNpfr  541 (565)
T KOG0472|consen  503 NMRNLTTLDLQNNDLQQIPPILGNMTNLRHLELDGNPFR  541 (565)
T ss_pred             hhhhcceeccCCCchhhCChhhccccceeEEEecCCccC
Confidence            677999999999999999999999999999999999874

>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]

Probab=99.35  E-value=5.3e-14  Score=92.63  Aligned_cols=68  Identities=28%  Similarity=0.372  Sum_probs=43.1

Q ss_pred             CChHhhhcCccceEEEeccceeeecc--CCCCCccccEEEcCCCCCCCCC-hhhhcCCCCcEEEcCCCcCC
Q 039528           69 CPLSLLAHHSKLEVLVLSSTILVKTE--NFLPTFQLKELGLANCSLNVVP-TFLLHQYDLKYLDLSHNNLV  136 (136)
Q Consensus        69 ~~~~~~~~~~~l~~l~l~~~~~~~~~--~~~~~~~L~~l~l~~n~~~~~~-~~~~~~~~L~~l~l~~n~l~  136 (136)
                      .|...|+.+++|+.+++++|.++.+.  +|.....++.|.+..|++..+. .++..+.+|+.|++++|.++
T Consensus       265 cP~~cf~~L~~L~~lnlsnN~i~~i~~~aFe~~a~l~eL~L~~N~l~~v~~~~f~~ls~L~tL~L~~N~it  335 (498)
T KOG4237|consen  265 CPAKCFKKLPNLRKLNLSNNKITRIEDGAFEGAAELQELYLTRNKLEFVSSGMFQGLSGLKTLSLYDNQIT  335 (498)
T ss_pred             ChHHHHhhcccceEeccCCCccchhhhhhhcchhhhhhhhcCcchHHHHHHHhhhccccceeeeecCCeeE
Confidence            34445566677777777777665543  4455556666666666664433 36667777778888877764

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]

Probab=99.35  E-value=5.5e-14  Score=97.94  Aligned_cols=129  Identities=28%  Similarity=0.319  Sum_probs=96.5

Q ss_pred             CCcccEEEcCCCcccccCcccccCCCcccEEEccCCccc-cccchhhhccCCCCEEEccCCcCcCCCChHhhhcCccceE
Q 039528            4 LKNLFELNLKGNNVEGHLPNCLKYLSHLKVFDISQNQLS-GSLSSTITSLTSLEYLDLSYNNFEGPCPLSLLAHHSKLEV   82 (136)
Q Consensus         4 l~~L~~l~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~-~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~~l~~   82 (136)
                      +.+|++|.+..|.+. .+...++.+|.|+.+.+..|++. .-+|..+..+..|..+|+++|++. ..|.. +...+++..
T Consensus        54 lqkLEHLs~~HN~L~-~vhGELs~Lp~LRsv~~R~N~LKnsGiP~diF~l~dLt~lDLShNqL~-EvP~~-LE~AKn~iV  130 (1255)
T KOG0444|consen   54 LQKLEHLSMAHNQLI-SVHGELSDLPRLRSVIVRDNNLKNSGIPTDIFRLKDLTILDLSHNQLR-EVPTN-LEYAKNSIV  130 (1255)
T ss_pred             HhhhhhhhhhhhhhH-hhhhhhccchhhHHHhhhccccccCCCCchhcccccceeeecchhhhh-hcchh-hhhhcCcEE
Confidence            445666666777666 34455667777777777776653 235566667888888888888887 56755 667788888


Q ss_pred             EEeccceeeecc--CCCCCccccEEEcCCCCCCCCChhhhcCCCCcEEEcCCCcC
Q 039528           83 LVLSSTILVKTE--NFLPTFQLKELGLANCSLNVVPTFLLHQYDLKYLDLSHNNL  135 (136)
Q Consensus        83 l~l~~~~~~~~~--~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~L~~l~l~~n~l  135 (136)
                      +++++|.+..++  .+..+..|-.|++++|++..+|+.+..+..|++|++++|++
T Consensus       131 LNLS~N~IetIPn~lfinLtDLLfLDLS~NrLe~LPPQ~RRL~~LqtL~Ls~NPL  185 (1255)
T KOG0444|consen  131 LNLSYNNIETIPNSLFINLTDLLFLDLSNNRLEMLPPQIRRLSMLQTLKLSNNPL  185 (1255)
T ss_pred             EEcccCccccCCchHHHhhHhHhhhccccchhhhcCHHHHHHhhhhhhhcCCChh
Confidence            889888887776  34566678888999999988898888888899999998875

>PLN03150 hypothetical protein; Provisional

Probab=99.33  E-value=1.2e-11  Score=88.00  Aligned_cols=105  Identities=30%  Similarity=0.497  Sum_probs=74.3

Q ss_pred             ccEEEcCCCcccccCcccccCCCcccEEEccCCccccccchhhhccCCCCEEEccCCcCcCCCChHhhhcCccceEEEec
Q 039528            7 LFELNLKGNNVEGHLPNCLKYLSHLKVFDISQNQLSGSLSSTITSLTSLEYLDLSYNNFEGPCPLSLLAHHSKLEVLVLS   86 (136)
Q Consensus         7 L~~l~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~~l~~l~l~   86 (136)
                      ++.|++++|.+.+.+|..+..+++|+.|++++|.+.+.+|..+..+++|+.|++++|.+++.+|.. +..+++|+.|+++
T Consensus       420 v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~-l~~L~~L~~L~Ls  498 (623)
T PLN03150        420 IDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPES-LGQLTSLRILNLN  498 (623)
T ss_pred             EEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchH-HhcCCCCCEEECc
Confidence            566778888888777877888888888888888887777777888888888888888887777754 6777788888887


Q ss_pred             cceee-eccC-CCC-CccccEEEcCCCCC
Q 039528           87 STILV-KTEN-FLP-TFQLKELGLANCSL  112 (136)
Q Consensus        87 ~~~~~-~~~~-~~~-~~~L~~l~l~~n~~  112 (136)
                      +|.+. ..+. +.. ...+..+++.+|..
T Consensus       499 ~N~l~g~iP~~l~~~~~~~~~l~~~~N~~  527 (623)
T PLN03150        499 GNSLSGRVPAALGGRLLHRASFNFTDNAG  527 (623)
T ss_pred             CCcccccCChHHhhccccCceEEecCCcc
Confidence            76543 2221 111 12445666666654

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]

Probab=99.32  E-value=1.3e-13  Score=98.71  Aligned_cols=127  Identities=34%  Similarity=0.394  Sum_probs=87.2

Q ss_pred             CcccEEEcCCCcccccCcccccCCCcccEEEccCCccccccchhhhccCCCCEEEccCCcCcCCCChHhhhcCccceEEE
Q 039528            5 KNLFELNLKGNNVEGHLPNCLKYLSHLKVFDISQNQLSGSLSSTITSLTSLEYLDLSYNNFEGPCPLSLLAHHSKLEVLV   84 (136)
Q Consensus         5 ~~L~~l~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~~l~~l~   84 (136)
                      +.|+.|.+.+|.+++..-+.+.++.+|+.|++++|++.......+.++..|+.|++++|+++ .+| .....++.|+++.
T Consensus       359 ~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNrL~~fpas~~~kle~LeeL~LSGNkL~-~Lp-~tva~~~~L~tL~  436 (1081)
T KOG0618|consen  359 AALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYNRLNSFPASKLRKLEELEELNLSGNKLT-TLP-DTVANLGRLHTLR  436 (1081)
T ss_pred             HHHHHHHHhcCcccccchhhhccccceeeeeecccccccCCHHHHhchHHhHHHhcccchhh-hhh-HHHHhhhhhHHHh
Confidence            44566677777777777677777777777777777776444445667777777777777776 566 3466777777777


Q ss_pred             eccceeeeccCCCCCccccEEEcCCCCCC--CCChhhhcCCCCcEEEcCCCc
Q 039528           85 LSSTILVKTENFLPTFQLKELGLANCSLN--VVPTFLLHQYDLKYLDLSHNN  134 (136)
Q Consensus        85 l~~~~~~~~~~~~~~~~L~~l~l~~n~~~--~~~~~~~~~~~L~~l~l~~n~  134 (136)
                      ..+|.+...|.+..++.|+.+|++.|.++  .+|.... .++|++||++||.
T Consensus       437 ahsN~l~~fPe~~~l~qL~~lDlS~N~L~~~~l~~~~p-~p~LkyLdlSGN~  487 (1081)
T KOG0618|consen  437 AHSNQLLSFPELAQLPQLKVLDLSCNNLSEVTLPEALP-SPNLKYLDLSGNT  487 (1081)
T ss_pred             hcCCceeechhhhhcCcceEEecccchhhhhhhhhhCC-CcccceeeccCCc
Confidence            77777766666666777788888887773  3332222 3678888887775

>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]

Probab=99.31  E-value=1.3e-13  Score=94.41  Aligned_cols=130  Identities=31%  Similarity=0.398  Sum_probs=103.4

Q ss_pred             CCCCcccEEEcCCCcccccCcccccCCCcccEEEccCCccccccchhhhccCCCCEEEccCCcCcCCCChHhhhcCccce
Q 039528            2 CELKNLFELNLKGNNVEGHLPNCLKYLSHLKVFDISQNQLSGSLSSTITSLTSLEYLDLSYNNFEGPCPLSLLAHHSKLE   81 (136)
Q Consensus         2 ~~l~~L~~l~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~~l~   81 (136)
                      +++..|..++++.|+++ .+|..++.|| |+.|-+++|+++ .+|..++....|..+|.+.|.+. ++|.. +..+.+++
T Consensus       118 ~~L~~lt~l~ls~NqlS-~lp~~lC~lp-Lkvli~sNNkl~-~lp~~ig~~~tl~~ld~s~nei~-slpsq-l~~l~slr  192 (722)
T KOG0532|consen  118 CNLEALTFLDLSSNQLS-HLPDGLCDLP-LKVLIVSNNKLT-SLPEEIGLLPTLAHLDVSKNEIQ-SLPSQ-LGYLTSLR  192 (722)
T ss_pred             hhhhHHHHhhhccchhh-cCChhhhcCc-ceeEEEecCccc-cCCcccccchhHHHhhhhhhhhh-hchHH-hhhHHHHH
Confidence            34566777888888888 6777777776 788888888876 67777777788888888888887 56654 77788888


Q ss_pred             EEEeccceeeeccCCCCCccccEEEcCCCCCCCCChhhhcCCCCcEEEcCCCcCC
Q 039528           82 VLVLSSTILVKTENFLPTFQLKELGLANCSLNVVPTFLLHQYDLKYLDLSHNNLV  136 (136)
Q Consensus        82 ~l~l~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~L~~l~l~~n~l~  136 (136)
                      .+.+..|.....+.-...-.|..||+++|++..+|..|.+++.|++|.+.+|+++
T Consensus       193 ~l~vrRn~l~~lp~El~~LpLi~lDfScNkis~iPv~fr~m~~Lq~l~LenNPLq  247 (722)
T KOG0532|consen  193 DLNVRRNHLEDLPEELCSLPLIRLDFSCNKISYLPVDFRKMRHLQVLQLENNPLQ  247 (722)
T ss_pred             HHHHhhhhhhhCCHHHhCCceeeeecccCceeecchhhhhhhhheeeeeccCCCC
Confidence            8888888776665322244789999999999999999999999999999999874

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=99.30  E-value=1.3e-12  Score=86.04  Aligned_cols=63  Identities=29%  Similarity=0.308  Sum_probs=29.0

Q ss_pred             CCcccEEEcCCCcccccCcccccCCCc---ccEEEccCCcccc----ccchhhhcc-CCCCEEEccCCcCc
Q 039528            4 LKNLFELNLKGNNVEGHLPNCLKYLSH---LKVFDISQNQLSG----SLSSTITSL-TSLEYLDLSYNNFE   66 (136)
Q Consensus         4 l~~L~~l~l~~~~l~~~~~~~~~~l~~---L~~L~l~~~~~~~----~~~~~~~~~-~~l~~l~l~~~~~~   66 (136)
                      +++|+.+++++|.+.+..+..+..+.+   |++|++++|.+.+    .....+..+ ++++.+++++|.++
T Consensus        80 ~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~  150 (319)
T cd00116          80 GCGLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLE  150 (319)
T ss_pred             cCceeEEEccCCCCChhHHHHHHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCC
Confidence            345555555555554333333333333   5555555555441    111222333 45555555555554

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=99.30  E-value=4.9e-12  Score=63.71  Aligned_cols=61  Identities=34%  Similarity=0.550  Sum_probs=48.3

Q ss_pred             CcccEEEcCCCcccccCcccccCCCcccEEEccCCccccccchhhhccCCCCEEEccCCcC
Q 039528            5 KNLFELNLKGNNVEGHLPNCLKYLSHLKVFDISQNQLSGSLSSTITSLTSLEYLDLSYNNF   65 (136)
Q Consensus         5 ~~L~~l~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~   65 (136)
                      |+|++|++++|.++...+..|.++++|+++++++|.++...++.|..+++|+++++++|++
T Consensus         1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l   61 (61)
T PF13855_consen    1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL   61 (61)
T ss_dssp             TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred             CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence            4678888888888866667788888888888888888766667788888888888887764

...

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=99.30  E-value=2.6e-12  Score=77.43  Aligned_cols=107  Identities=25%  Similarity=0.264  Sum_probs=41.4

Q ss_pred             ccCCCcccEEEccCCccccccchhhh-ccCCCCEEEccCCcCcCCCChHhhhcCccceEEEeccceeeeccC-C-CCCcc
Q 039528           25 LKYLSHLKVFDISQNQLSGSLSSTIT-SLTSLEYLDLSYNNFEGPCPLSLLAHHSKLEVLVLSSTILVKTEN-F-LPTFQ  101 (136)
Q Consensus        25 ~~~l~~L~~L~l~~~~~~~~~~~~~~-~~~~l~~l~l~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~-~-~~~~~  101 (136)
                      +.+..++++|++++|.++.+  +.++ .+.+|+.|++++|.++ .+.  .+..++.|+.|++++|.+..... + ..+++
T Consensus        15 ~~n~~~~~~L~L~~n~I~~I--e~L~~~l~~L~~L~Ls~N~I~-~l~--~l~~L~~L~~L~L~~N~I~~i~~~l~~~lp~   89 (175)
T PF14580_consen   15 YNNPVKLRELNLRGNQISTI--ENLGATLDKLEVLDLSNNQIT-KLE--GLPGLPRLKTLDLSNNRISSISEGLDKNLPN   89 (175)
T ss_dssp             -----------------------S--TT-TT--EEE-TTS--S---T--T----TT--EEE--SS---S-CHHHHHH-TT
T ss_pred             cccccccccccccccccccc--cchhhhhcCCCEEECCCCCCc-ccc--CccChhhhhhcccCCCCCCccccchHHhCCc
Confidence            34566789999999999743  4555 5789999999999998 444  37789999999999999987742 2 34679


Q ss_pred             ccEEEcCCCCCCCCC--hhhhcCCCCcEEEcCCCcCC
Q 039528          102 LKELGLANCSLNVVP--TFLLHQYDLKYLDLSHNNLV  136 (136)
Q Consensus       102 L~~l~l~~n~~~~~~--~~~~~~~~L~~l~l~~n~l~  136 (136)
                      |+.|++++|++.++.  ..++.+++|+.|++.+|+++
T Consensus        90 L~~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~  126 (175)
T PF14580_consen   90 LQELYLSNNKISDLNELEPLSSLPKLRVLSLEGNPVC  126 (175)
T ss_dssp             --EEE-TTS---SCCCCGGGGG-TT--EEE-TT-GGG
T ss_pred             CCEEECcCCcCCChHHhHHHHcCCCcceeeccCCccc
Confidence            999999999995544  47789999999999999874

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=99.28  E-value=6.9e-12  Score=82.55  Aligned_cols=132  Identities=27%  Similarity=0.337  Sum_probs=78.4

Q ss_pred             CcccEEEcCCCccccc----CcccccCCCcccEEEccCCccccc----cchhhhccCCCCEEEccCCcCcCCCCh---Hh
Q 039528            5 KNLFELNLKGNNVEGH----LPNCLKYLSHLKVFDISQNQLSGS----LSSTITSLTSLEYLDLSYNNFEGPCPL---SL   73 (136)
Q Consensus         5 ~~L~~l~l~~~~l~~~----~~~~~~~l~~L~~L~l~~~~~~~~----~~~~~~~~~~l~~l~l~~~~~~~~~~~---~~   73 (136)
                      ++|+.+++++|.+++.    ++..+..+++|++|++++|.+++.    ++..+...++|++|++++|.+.+....   ..
T Consensus       137 ~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~  216 (319)
T cd00116         137 PALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAET  216 (319)
T ss_pred             CCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHH
Confidence            5667777777776632    233445566777777777766532    223344455777777777776532211   12


Q ss_pred             hhcCccceEEEeccceeeecc--C-----CCCCccccEEEcCCCCCC-----CCChhhhcCCCCcEEEcCCCcCC
Q 039528           74 LAHHSKLEVLVLSSTILVKTE--N-----FLPTFQLKELGLANCSLN-----VVPTFLLHQYDLKYLDLSHNNLV  136 (136)
Q Consensus        74 ~~~~~~l~~l~l~~~~~~~~~--~-----~~~~~~L~~l~l~~n~~~-----~~~~~~~~~~~L~~l~l~~n~l~  136 (136)
                      +..+++|+++++++|.+.+..  .     ......|+.|++.+|.++     .+...+..+++|+++++++|.++
T Consensus       217 ~~~~~~L~~L~ls~n~l~~~~~~~l~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~L~~l~l~~N~l~  291 (319)
T cd00116         217 LASLKSLEVLNLGDNNLTDAGAAALASALLSPNISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGNKFG  291 (319)
T ss_pred             hcccCCCCEEecCCCcCchHHHHHHHHHHhccCCCceEEEccCCCCCcHHHHHHHHHHhcCCCccEEECCCCCCc
Confidence            445667788888777665421  0     112357788888887774     23335556677888888887763

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=99.22  E-value=3.7e-11  Score=86.65  Aligned_cols=125  Identities=27%  Similarity=0.300  Sum_probs=81.4

Q ss_pred             CCcccEEEcCCCccccc--Cccccc----------C---C-CcccEEEccCCccccccchhhh-----------------
Q 039528            4 LKNLFELNLKGNNVEGH--LPNCLK----------Y---L-SHLKVFDISQNQLSGSLSSTIT-----------------   50 (136)
Q Consensus         4 l~~L~~l~l~~~~l~~~--~~~~~~----------~---l-~~L~~L~l~~~~~~~~~~~~~~-----------------   50 (136)
                      +++|+.|++++|.+.+.  .|..+.          .   + .+|++|++++|.++. +|....                 
T Consensus       301 p~~L~~LdLS~N~L~~Lp~lp~~L~~L~Ls~N~L~~LP~lp~~Lq~LdLS~N~Ls~-LP~lp~~L~~L~Ls~N~L~~LP~  379 (788)
T PRK15387        301 PPGLQELSVSDNQLASLPALPSELCKLWAYNNQLTSLPTLPSGLQELSVSDNQLAS-LPTLPSELYKLWAYNNRLTSLPA  379 (788)
T ss_pred             ccccceeECCCCccccCCCCcccccccccccCccccccccccccceEecCCCccCC-CCCCCcccceehhhccccccCcc
Confidence            36777777777777642  111111          1   1 267788888887763 332111                 


Q ss_pred             ccCCCCEEEccCCcCcCCCChHhhhcCccceEEEeccceeeeccCCCCCccccEEEcCCCCCCCCChhhhcCCCCcEEEc
Q 039528           51 SLTSLEYLDLSYNNFEGPCPLSLLAHHSKLEVLVLSSTILVKTENFLPTFQLKELGLANCSLNVVPTFLLHQYDLKYLDL  130 (136)
Q Consensus        51 ~~~~l~~l~l~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~L~~l~l  130 (136)
                      ...+|+.|++++|.+. .+|.    ..++|+.|++++|.+...+..  ...|+.|++++|.++.+|..+..+++++.+++
T Consensus       380 l~~~L~~LdLs~N~Lt-~LP~----l~s~L~~LdLS~N~LssIP~l--~~~L~~L~Ls~NqLt~LP~sl~~L~~L~~LdL  452 (788)
T PRK15387        380 LPSGLKELIVSGNRLT-SLPV----LPSELKELMVSGNRLTSLPML--PSGLLSLSVYRNQLTRLPESLIHLSSETTVNL  452 (788)
T ss_pred             cccccceEEecCCccc-CCCC----cccCCCEEEccCCcCCCCCcc--hhhhhhhhhccCcccccChHHhhccCCCeEEC
Confidence            1134666666666665 3442    134677777777776655433  33688889999999889999999999999999


Q ss_pred             CCCcCC
Q 039528          131 SHNNLV  136 (136)
Q Consensus       131 ~~n~l~  136 (136)
                      ++|+++
T Consensus       453 s~N~Ls  458 (788)
T PRK15387        453 EGNPLS  458 (788)
T ss_pred             CCCCCC
Confidence            999875

>PLN03150 hypothetical protein; Provisional

Probab=99.21  E-value=6e-11  Score=84.55  Aligned_cols=88  Identities=30%  Similarity=0.520  Sum_probs=77.3

Q ss_pred             CCCCcccEEEcCCCcccccCcccccCCCcccEEEccCCccccccchhhhccCCCCEEEccCCcCcCCCChHhhhcCccce
Q 039528            2 CELKNLFELNLKGNNVEGHLPNCLKYLSHLKVFDISQNQLSGSLSSTITSLTSLEYLDLSYNNFEGPCPLSLLAHHSKLE   81 (136)
Q Consensus         2 ~~l~~L~~l~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~~l~   81 (136)
                      ..+++|+.|++++|.+.+.+|..+..+++|+.|++++|.+++..|..+..+++|++|++++|.+++.+|........++.
T Consensus       439 ~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~N~l~g~iP~~l~~~~~~~~  518 (623)
T PLN03150        439 SKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGNSLSGRVPAALGGRLLHRA  518 (623)
T ss_pred             hCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcCCcccccCChHHhhccccCc
Confidence            45789999999999999999999999999999999999999999999999999999999999999999976333335667


Q ss_pred             EEEeccce
Q 039528           82 VLVLSSTI   89 (136)
Q Consensus        82 ~l~l~~~~   89 (136)
                      .+++.+|.
T Consensus       519 ~l~~~~N~  526 (623)
T PLN03150        519 SFNFTDNA  526 (623)
T ss_pred             eEEecCCc
Confidence            78888764

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]

Probab=99.21  E-value=1.1e-12  Score=93.99  Aligned_cols=106  Identities=31%  Similarity=0.343  Sum_probs=82.6

Q ss_pred             CcccEEEccCCccccccchhhhccCCCCEEEccCCcCcCCCChHhhhcCccceEEEeccceeeecc-CCCCCccccEEEc
Q 039528           29 SHLKVFDISQNQLSGSLSSTITSLTSLEYLDLSYNNFEGPCPLSLLAHHSKLEVLVLSSTILVKTE-NFLPTFQLKELGL  107 (136)
Q Consensus        29 ~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~-~~~~~~~L~~l~l  107 (136)
                      +.|+.|++.+|.++...-..+.+++.|+.|++++|++. .+|++.+..+..|+++++++|.....+ ....+..|++|..
T Consensus       359 ~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNrL~-~fpas~~~kle~LeeL~LSGNkL~~Lp~tva~~~~L~tL~a  437 (1081)
T KOG0618|consen  359 AALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYNRLN-SFPASKLRKLEELEELNLSGNKLTTLPDTVANLGRLHTLRA  437 (1081)
T ss_pred             HHHHHHHHhcCcccccchhhhccccceeeeeecccccc-cCCHHHHhchHHhHHHhcccchhhhhhHHHHhhhhhHHHhh
Confidence            45666777777776666566677888888888888886 677777888888888888888876665 2345557888888


Q ss_pred             CCCCCCCCChhhhcCCCCcEEEcCCCcCC
Q 039528          108 ANCSLNVVPTFLLHQYDLKYLDLSHNNLV  136 (136)
Q Consensus       108 ~~n~~~~~~~~~~~~~~L~~l~l~~n~l~  136 (136)
                      -.|.+..+| .+..+++|+.+|+++|.++
T Consensus       438 hsN~l~~fP-e~~~l~qL~~lDlS~N~L~  465 (1081)
T KOG0618|consen  438 HSNQLLSFP-ELAQLPQLKVLDLSCNNLS  465 (1081)
T ss_pred             cCCceeech-hhhhcCcceEEecccchhh
Confidence            888888888 7888999999999999874

>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]

Probab=99.16  E-value=8.3e-13  Score=87.16  Aligned_cols=129  Identities=22%  Similarity=0.267  Sum_probs=106.4

Q ss_pred             cccEEEcCCCcccccCcccccCCCcccEEEccCCccccccchhhhccCCCCEEEc-cCCcCcCCCChHhhhcCccceEEE
Q 039528            6 NLFELNLKGNNVEGHLPNCLKYLSHLKVFDISQNQLSGSLSSTITSLTSLEYLDL-SYNNFEGPCPLSLLAHHSKLEVLV   84 (136)
Q Consensus         6 ~L~~l~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~l-~~~~~~~~~~~~~~~~~~~l~~l~   84 (136)
                      ....+.+..|.|+...+.+|..+++|+.+++++|+|+.+.|++|..+.++..|-+ ++|+++ .+++..|..+..++.+.
T Consensus        68 ~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~-~l~k~~F~gL~slqrLl  146 (498)
T KOG4237|consen   68 ETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKIT-DLPKGAFGGLSSLQRLL  146 (498)
T ss_pred             cceEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchh-hhhhhHhhhHHHHHHHh
Confidence            3567899999999877889999999999999999999999999999998866554 558898 78888899999998888


Q ss_pred             eccceeee--ccCCCCCccccEEEcCCCCCCCCCh-hhhcCCCCcEEEcCCCcC
Q 039528           85 LSSTILVK--TENFLPTFQLKELGLANCSLNVVPT-FLLHQYDLKYLDLSHNNL  135 (136)
Q Consensus        85 l~~~~~~~--~~~~~~~~~L~~l~l~~n~~~~~~~-~~~~~~~L~~l~l~~n~l  135 (136)
                      +.-|.+.-  ..++..++++..|.+.+|.+..++. .+..+..++.+++.-|++
T Consensus       147 lNan~i~Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np~  200 (498)
T KOG4237|consen  147 LNANHINCIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNPF  200 (498)
T ss_pred             cChhhhcchhHHHHHHhhhcchhcccchhhhhhccccccchhccchHhhhcCcc
Confidence            88776532  2366777888999999999977775 777788888888877763

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=99.14  E-value=1.5e-10  Score=83.70  Aligned_cols=120  Identities=27%  Similarity=0.379  Sum_probs=66.0

Q ss_pred             cccEEEcCCCcccccCcccccCCCcccEEEccCCccccccchhhhccCCCCEEEccCCcCcCCCChHhh-----------
Q 039528            6 NLFELNLKGNNVEGHLPNCLKYLSHLKVFDISQNQLSGSLSSTITSLTSLEYLDLSYNNFEGPCPLSLL-----------   74 (136)
Q Consensus         6 ~L~~l~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~-----------   74 (136)
                      .|+.|++++|.+. .+|..+.  ..|+.|++++|.++ .+|..+.  .+|+.|++++|+++ .+|....           
T Consensus       242 ~L~~L~Ls~N~L~-~LP~~l~--s~L~~L~Ls~N~L~-~LP~~l~--~sL~~L~Ls~N~Lt-~LP~~lp~sL~~L~Ls~N  314 (754)
T PRK15370        242 TIQEMELSINRIT-ELPERLP--SALQSLDLFHNKIS-CLPENLP--EELRYLSVYDNSIR-TLPAHLPSGITHLNVQSN  314 (754)
T ss_pred             cccEEECcCCccC-cCChhHh--CCCCEEECcCCccC-ccccccC--CCCcEEECCCCccc-cCcccchhhHHHHHhcCC
Confidence            4667777777766 4454432  35666677666665 3444332  35666666666665 2221100           


Q ss_pred             -------hcCccceEEEeccceeeeccCCCCCccccEEEcCCCCCCCCChhhhcCCCCcEEEcCCCcC
Q 039528           75 -------AHHSKLEVLVLSSTILVKTENFLPTFQLKELGLANCSLNVVPTFLLHQYDLKYLDLSHNNL  135 (136)
Q Consensus        75 -------~~~~~l~~l~l~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~L~~l~l~~n~l  135 (136)
                             ...++|+.|++++|.+...+... .++|+.|++++|.++.+|..+.  ++|+.|++++|.+
T Consensus       315 ~Lt~LP~~l~~sL~~L~Ls~N~Lt~LP~~l-~~sL~~L~Ls~N~L~~LP~~lp--~~L~~LdLs~N~L  379 (754)
T PRK15370        315 SLTALPETLPPGLKTLEAGENALTSLPASL-PPELQVLDVSKNQITVLPETLP--PTITTLDVSRNAL  379 (754)
T ss_pred             ccccCCccccccceeccccCCccccCChhh-cCcccEEECCCCCCCcCChhhc--CCcCEEECCCCcC
Confidence                   01134566666665554433211 2367777777777766665442  4677777777765

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=99.13  E-value=4.3e-11  Score=60.24  Aligned_cols=60  Identities=32%  Similarity=0.447  Sum_probs=45.8

Q ss_pred             CcccEEEccCCccccccchhhhccCCCCEEEccCCcCcCCCChHhhhcCccceEEEeccce
Q 039528           29 SHLKVFDISQNQLSGSLSSTITSLTSLEYLDLSYNNFEGPCPLSLLAHHSKLEVLVLSSTI   89 (136)
Q Consensus        29 ~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~~l~~l~l~~~~   89 (136)
                      |+|++|++++|.++...+..|..+++|+++++++|.++ .++...+..+++|+++++++|.
T Consensus         1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~-~i~~~~f~~l~~L~~L~l~~N~   60 (61)
T PF13855_consen    1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLT-SIPPDAFSNLPNLRYLDLSNNN   60 (61)
T ss_dssp             TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSES-EEETTTTTTSTTESEEEETSSS
T ss_pred             CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccC-ccCHHHHcCCCCCCEEeCcCCc
Confidence            46788888888887666667788888888888888887 4554567778888888877764

...

>PLN03210 Resistant to P

Probab=99.11  E-value=5.5e-10  Score=84.54  Aligned_cols=124  Identities=25%  Similarity=0.213  Sum_probs=71.3

Q ss_pred             CcccEEEcCCCcccccCcccccCCCcccEEEccCCccccccchhhhccCCCCEEEccCCcCcCCCChHhhhcCccceEEE
Q 039528            5 KNLFELNLKGNNVEGHLPNCLKYLSHLKVFDISQNQLSGSLSSTITSLTSLEYLDLSYNNFEGPCPLSLLAHHSKLEVLV   84 (136)
Q Consensus         5 ~~L~~l~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~~l~~l~   84 (136)
                      ++|+.|++++|.....+|..+.++++|+.|++++|..-..+|... .+++|+.|++++|.....+|.    ...+++.++
T Consensus       778 ~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~-~L~sL~~L~Ls~c~~L~~~p~----~~~nL~~L~  852 (1153)
T PLN03210        778 PSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTGI-NLESLESLDLSGCSRLRTFPD----ISTNISDLN  852 (1153)
T ss_pred             ccchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCCCC-CccccCEEECCCCCccccccc----cccccCEeE
Confidence            356666666665554566666666667777666654323444443 456666666666544333331    124566666


Q ss_pred             eccceeeecc-CCCCCccccEEEcCCCC-CCCCChhhhcCCCCcEEEcCCC
Q 039528           85 LSSTILVKTE-NFLPTFQLKELGLANCS-LNVVPTFLLHQYDLKYLDLSHN  133 (136)
Q Consensus        85 l~~~~~~~~~-~~~~~~~L~~l~l~~n~-~~~~~~~~~~~~~L~~l~l~~n  133 (136)
                      +++|.+...+ .+..+++|+.|++.+|. +..+|..+..++.|+.+++++|
T Consensus       853 Ls~n~i~~iP~si~~l~~L~~L~L~~C~~L~~l~~~~~~L~~L~~L~l~~C  903 (1153)
T PLN03210        853 LSRTGIEEVPWWIEKFSNLSFLDMNGCNNLQRVSLNISKLKHLETVDFSDC  903 (1153)
T ss_pred             CCCCCCccChHHHhcCCCCCEEECCCCCCcCccCcccccccCCCeeecCCC
Confidence            6666665544 23445567777776644 3556666666666666666654

syringae 6; Provisional

>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]

Probab=99.10  E-value=3.6e-11  Score=78.20  Aligned_cols=133  Identities=18%  Similarity=0.137  Sum_probs=94.1

Q ss_pred             CCCcccEEEcCCCcccccCccc----ccCCCcccEEEccCCccccccc-------------hhhhccCCCCEEEccCCcC
Q 039528            3 ELKNLFELNLKGNNVEGHLPNC----LKYLSHLKVFDISQNQLSGSLS-------------STITSLTSLEYLDLSYNNF   65 (136)
Q Consensus         3 ~l~~L~~l~l~~~~l~~~~~~~----~~~l~~L~~L~l~~~~~~~~~~-------------~~~~~~~~l~~l~l~~~~~   65 (136)
                      .+++|+++++|+|.+....++.    ++++..|++|++++|.+.-...             .....-+.|+++..++|++
T Consensus        90 ~~~~L~~ldLSDNA~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrl  169 (382)
T KOG1909|consen   90 GCPKLQKLDLSDNAFGPKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRL  169 (382)
T ss_pred             cCCceeEeeccccccCccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeecccc
Confidence            4678999999999998665554    4668899999999998751111             1123356789999999998


Q ss_pred             cCCCC---hHhhhcCccceEEEeccceeeecc------CCCCCccccEEEcCCCCCCC-----CChhhhcCCCCcEEEcC
Q 039528           66 EGPCP---LSLLAHHSKLEVLVLSSTILVKTE------NFLPTFQLKELGLANCSLNV-----VPTFLLHQYDLKYLDLS  131 (136)
Q Consensus        66 ~~~~~---~~~~~~~~~l~~l~l~~~~~~~~~------~~~~~~~L~~l~l~~n~~~~-----~~~~~~~~~~L~~l~l~  131 (136)
                      .....   +..++..+.++.+.+..|.+.+.+      ++..++.|+.|++++|-++.     +...+..++.|+.++++
T Consensus       170 en~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~  249 (382)
T KOG1909|consen  170 ENGGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLG  249 (382)
T ss_pred             ccccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeeccc
Confidence            52211   225667788888888888876654      34667788888888888832     33456677778888777


Q ss_pred             CCcC
Q 039528          132 HNNL  135 (136)
Q Consensus       132 ~n~l  135 (136)
                      .|.+
T Consensus       250 dcll  253 (382)
T KOG1909|consen  250 DCLL  253 (382)
T ss_pred             cccc
Confidence            7654

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=99.08  E-value=6.8e-10  Score=80.34  Aligned_cols=32  Identities=31%  Similarity=0.540  Sum_probs=16.1

Q ss_pred             ccEEEcCCCcccccCcccccCCCcccEEEccCCccc
Q 039528            7 LFELNLKGNNVEGHLPNCLKYLSHLKVFDISQNQLS   42 (136)
Q Consensus         7 L~~l~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~   42 (136)
                      ++.|++.+|.++. +|.   ..++|++|++++|+++
T Consensus       224 L~~L~L~~N~Lt~-LP~---lp~~Lk~LdLs~N~Lt  255 (788)
T PRK15387        224 ITTLVIPDNNLTS-LPA---LPPELRTLEVSGNQLT  255 (788)
T ss_pred             CCEEEccCCcCCC-CCC---CCCCCcEEEecCCccC
Confidence            4555555555552 332   1345555555555554

>PLN03210 Resistant to P

Probab=99.08  E-value=1.9e-09  Score=81.66  Aligned_cols=104  Identities=27%  Similarity=0.291  Sum_probs=49.0

Q ss_pred             CcccEEEcCCCcccccCcccccCCCcccEEEccCCccccccchhhhccCCCCEEEccCCcCcCCCChHhhhcCccceEEE
Q 039528            5 KNLFELNLKGNNVEGHLPNCLKYLSHLKVFDISQNQLSGSLSSTITSLTSLEYLDLSYNNFEGPCPLSLLAHHSKLEVLV   84 (136)
Q Consensus         5 ~~L~~l~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~~l~~l~   84 (136)
                      .+|+.|++.++.+. .++..+..+++|+.++++++.....+| .+..+++|+.|++.+|.....+|.. +..+++|+.++
T Consensus       611 ~~L~~L~L~~s~l~-~L~~~~~~l~~Lk~L~Ls~~~~l~~ip-~ls~l~~Le~L~L~~c~~L~~lp~s-i~~L~~L~~L~  687 (1153)
T PLN03210        611 ENLVKLQMQGSKLE-KLWDGVHSLTGLRNIDLRGSKNLKEIP-DLSMATNLETLKLSDCSSLVELPSS-IQYLNKLEDLD  687 (1153)
T ss_pred             cCCcEEECcCcccc-ccccccccCCCCCEEECCCCCCcCcCC-ccccCCcccEEEecCCCCccccchh-hhccCCCCEEe
Confidence            34555555555554 334444555555555555543222333 2444555555555555443344433 44555555555


Q ss_pred             eccc-eeeeccCCCCCccccEEEcCCCC
Q 039528           85 LSST-ILVKTENFLPTFQLKELGLANCS  111 (136)
Q Consensus        85 l~~~-~~~~~~~~~~~~~L~~l~l~~n~  111 (136)
                      ++++ .+...+....+.+|+.|++++|.
T Consensus       688 L~~c~~L~~Lp~~i~l~sL~~L~Lsgc~  715 (1153)
T PLN03210        688 MSRCENLEILPTGINLKSLYRLNLSGCS  715 (1153)
T ss_pred             CCCCCCcCccCCcCCCCCCCEEeCCCCC
Confidence            5552 23333322233445555555443

syringae 6; Provisional

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=99.05  E-value=2.6e-09  Score=77.44  Aligned_cols=116  Identities=26%  Similarity=0.377  Sum_probs=48.9

Q ss_pred             ccEEEcCCCcccccCcccccCCCcccEEEccCCccccccchhhhccCCCCEEEccCCcCcCCCChHhhhcCccceEEEec
Q 039528            7 LFELNLKGNNVEGHLPNCLKYLSHLKVFDISQNQLSGSLSSTITSLTSLEYLDLSYNNFEGPCPLSLLAHHSKLEVLVLS   86 (136)
Q Consensus         7 L~~l~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~~l~~l~l~   86 (136)
                      ++.|++++|.++ .+|..+.  .+|++|++++|.++ .+|..+.  ..|+.|++++|.+. .+|.. +  ..+|+.|+++
T Consensus       201 L~~L~Ls~N~Lt-sLP~~l~--~nL~~L~Ls~N~Lt-sLP~~l~--~~L~~L~Ls~N~L~-~LP~~-l--~s~L~~L~Ls  270 (754)
T PRK15370        201 ITTLILDNNELK-SLPENLQ--GNIKTLYANSNQLT-SIPATLP--DTIQEMELSINRIT-ELPER-L--PSALQSLDLF  270 (754)
T ss_pred             CcEEEecCCCCC-cCChhhc--cCCCEEECCCCccc-cCChhhh--ccccEEECcCCccC-cCChh-H--hCCCCEEECc
Confidence            444444444444 2332221  24445555544444 2333221  23455555555544 33322 1  1245555555


Q ss_pred             cceeeeccCCCCCccccEEEcCCCCCCCCChhhhcCCCCcEEEcCCCcC
Q 039528           87 STILVKTENFLPTFQLKELGLANCSLNVVPTFLLHQYDLKYLDLSHNNL  135 (136)
Q Consensus        87 ~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~L~~l~l~~n~l  135 (136)
                      +|.+...+... ..+|+.|++++|.++.+|..+.  .+|+.|++++|.+
T Consensus       271 ~N~L~~LP~~l-~~sL~~L~Ls~N~Lt~LP~~lp--~sL~~L~Ls~N~L  316 (754)
T PRK15370        271 HNKISCLPENL-PEELRYLSVYDNSIRTLPAHLP--SGITHLNVQSNSL  316 (754)
T ss_pred             CCccCcccccc-CCCCcEEECCCCccccCcccch--hhHHHHHhcCCcc
Confidence            55444332110 1245555555555544443222  2345555555543

>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]

Probab=99.00  E-value=3.7e-12  Score=87.53  Aligned_cols=123  Identities=26%  Similarity=0.290  Sum_probs=94.9

Q ss_pred             cEEEcCCCcccccCcccccCCCcccEEEccCCccccccchhhhccCCCCEEEccCCcCcCCCChHhhhcCccceEEEecc
Q 039528            8 FELNLKGNNVEGHLPNCLKYLSHLKVFDISQNQLSGSLSSTITSLTSLEYLDLSYNNFEGPCPLSLLAHHSKLEVLVLSS   87 (136)
Q Consensus         8 ~~l~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~~l~~l~l~~   87 (136)
                      +.+.+..|.+. .+|.+++++..|.+++++.|+++ .+|..+..++ |+.+.+++|+++ .+|.. ++....+..++.+.
T Consensus       101 e~liLy~n~~r-~ip~~i~~L~~lt~l~ls~NqlS-~lp~~lC~lp-Lkvli~sNNkl~-~lp~~-ig~~~tl~~ld~s~  175 (722)
T KOG0532|consen  101 ESLILYHNCIR-TIPEAICNLEALTFLDLSSNQLS-HLPDGLCDLP-LKVLIVSNNKLT-SLPEE-IGLLPTLAHLDVSK  175 (722)
T ss_pred             HHHHHHhccce-ecchhhhhhhHHHHhhhccchhh-cCChhhhcCc-ceeEEEecCccc-cCCcc-cccchhHHHhhhhh
Confidence            33445555555 56777788888888888888887 6777775554 788888888886 66655 66778888899888


Q ss_pred             ceeeecc-CCCCCccccEEEcCCCCCCCCChhhhcCCCCcEEEcCCCcCC
Q 039528           88 TILVKTE-NFLPTFQLKELGLANCSLNVVPTFLLHQYDLKYLDLSHNNLV  136 (136)
Q Consensus        88 ~~~~~~~-~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~L~~l~l~~n~l~  136 (136)
                      |.+...+ ..+.+.+|+.|.++.|.+..+|..+..++ |..||+|+|.++
T Consensus       176 nei~slpsql~~l~slr~l~vrRn~l~~lp~El~~Lp-Li~lDfScNkis  224 (722)
T KOG0532|consen  176 NEIQSLPSQLGYLTSLRDLNVRRNHLEDLPEELCSLP-LIRLDFSCNKIS  224 (722)
T ss_pred             hhhhhchHHhhhHHHHHHHHHhhhhhhhCCHHHhCCc-eeeeecccCcee
Confidence            8776554 45777789999999999999999888554 999999999874

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=98.97  E-value=3.6e-10  Score=76.65  Aligned_cols=125  Identities=38%  Similarity=0.463  Sum_probs=67.1

Q ss_pred             cccEEEcCCCcccccCcccccCCCcccEEEccCCccccccchhhhccCCCCEEEccCCcCcCCCChHhhhcCccceEEEe
Q 039528            6 NLFELNLKGNNVEGHLPNCLKYLSHLKVFDISQNQLSGSLSSTITSLTSLEYLDLSYNNFEGPCPLSLLAHHSKLEVLVL   85 (136)
Q Consensus         6 ~L~~l~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~~l~~l~l   85 (136)
                      +|+.+++++|.+. .++..+..++.|+.|+++.|+++ ..+......+.+..+++++|++. .+|.. ......|.++.+
T Consensus       141 nL~~L~l~~N~i~-~l~~~~~~l~~L~~L~l~~N~l~-~l~~~~~~~~~L~~L~ls~N~i~-~l~~~-~~~~~~L~~l~~  216 (394)
T COG4886         141 NLKELDLSDNKIE-SLPSPLRNLPNLKNLDLSFNDLS-DLPKLLSNLSNLNNLDLSGNKIS-DLPPE-IELLSALEELDL  216 (394)
T ss_pred             hcccccccccchh-hhhhhhhccccccccccCCchhh-hhhhhhhhhhhhhheeccCCccc-cCchh-hhhhhhhhhhhh
Confidence            4566666666665 34444556666666666666665 33333335555666666666665 33321 122233444444


Q ss_pred             ccc-----------------------eeeec-cCCCCCccccEEEcCCCCCCCCChhhhcCCCCcEEEcCCCcC
Q 039528           86 SST-----------------------ILVKT-ENFLPTFQLKELGLANCSLNVVPTFLLHQYDLKYLDLSHNNL  135 (136)
Q Consensus        86 ~~~-----------------------~~~~~-~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~L~~l~l~~n~l  135 (136)
                      ++|                       .+... .....+..+++|++++|.+++++. ++...+++.+++++|.+
T Consensus       217 ~~N~~~~~~~~~~~~~~l~~l~l~~n~~~~~~~~~~~l~~l~~L~~s~n~i~~i~~-~~~~~~l~~L~~s~n~~  289 (394)
T COG4886         217 SNNSIIELLSSLSNLKNLSGLELSNNKLEDLPESIGNLSNLETLDLSNNQISSISS-LGSLTNLRELDLSGNSL  289 (394)
T ss_pred             cCCcceecchhhhhcccccccccCCceeeeccchhccccccceecccccccccccc-ccccCccCEEeccCccc
Confidence            444                       33321 122334456677777777766655 66666777777776654

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=98.96  E-value=9.7e-10  Score=74.60  Aligned_cols=112  Identities=33%  Similarity=0.432  Sum_probs=75.5

Q ss_pred             CCCCcccEEEcCCCcccccCcccccCCCcccEEEccCCccccccchh-----------------------hhccCCCCEE
Q 039528            2 CELKNLFELNLKGNNVEGHLPNCLKYLSHLKVFDISQNQLSGSLSST-----------------------ITSLTSLEYL   58 (136)
Q Consensus         2 ~~l~~L~~l~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~-----------------------~~~~~~l~~l   58 (136)
                      ..++.|+.|++++|.+. .++......+.|+.|++++|.++ .+|..                       +..+.++..+
T Consensus       160 ~~l~~L~~L~l~~N~l~-~l~~~~~~~~~L~~L~ls~N~i~-~l~~~~~~~~~L~~l~~~~N~~~~~~~~~~~~~~l~~l  237 (394)
T COG4886         160 RNLPNLKNLDLSFNDLS-DLPKLLSNLSNLNNLDLSGNKIS-DLPPEIELLSALEELDLSNNSIIELLSSLSNLKNLSGL  237 (394)
T ss_pred             hccccccccccCCchhh-hhhhhhhhhhhhhheeccCCccc-cCchhhhhhhhhhhhhhcCCcceecchhhhhccccccc
Confidence            35777888888888887 45554446777777777777765 33332                       2233344444


Q ss_pred             EccCCcCcCCCChHhhhcCccceEEEeccceeeeccCCCCCccccEEEcCCCCCCCCCh
Q 039528           59 DLSYNNFEGPCPLSLLAHHSKLEVLVLSSTILVKTENFLPTFQLKELGLANCSLNVVPT  117 (136)
Q Consensus        59 ~l~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~  117 (136)
                      .+.+|+.. ..+ .....++.++.+++++|.+.+........+++.++++++.+...+.
T Consensus       238 ~l~~n~~~-~~~-~~~~~l~~l~~L~~s~n~i~~i~~~~~~~~l~~L~~s~n~~~~~~~  294 (394)
T COG4886         238 ELSNNKLE-DLP-ESIGNLSNLETLDLSNNQISSISSLGSLTNLRELDLSGNSLSNALP  294 (394)
T ss_pred             ccCCceee-ecc-chhccccccceeccccccccccccccccCccCEEeccCccccccch
Confidence            44444443 212 2366778899999999999888777777899999999999854443

>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]

Probab=98.81  E-value=1.6e-09  Score=70.74  Aligned_cols=133  Identities=23%  Similarity=0.262  Sum_probs=101.0

Q ss_pred             CCCcccEEEcCCCccccc----CcccccCCCcccEEEccCCcccc----ccchhhhccCCCCEEEccCCcCcCCCC---h
Q 039528            3 ELKNLFELNLKGNNVEGH----LPNCLKYLSHLKVFDISQNQLSG----SLSSTITSLTSLEYLDLSYNNFEGPCP---L   71 (136)
Q Consensus         3 ~l~~L~~l~l~~~~l~~~----~~~~~~~l~~L~~L~l~~~~~~~----~~~~~~~~~~~l~~l~l~~~~~~~~~~---~   71 (136)
                      +-+.|+++..++|.+...    +...|..++.|+.+.+..|.|..    ....++..++.|+.||+.+|.++....   +
T Consensus       155 ~~~~Lrv~i~~rNrlen~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~La  234 (382)
T KOG1909|consen  155 SKPKLRVFICGRNRLENGGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALA  234 (382)
T ss_pred             CCcceEEEEeeccccccccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHH
Confidence            457799999999998754    33456778999999999887752    234567789999999999999963221   2


Q ss_pred             HhhhcCccceEEEeccceeeeccC------C-CCCccccEEEcCCCCCCC-----CChhhhcCCCCcEEEcCCCcC
Q 039528           72 SLLAHHSKLEVLVLSSTILVKTEN------F-LPTFQLKELGLANCSLNV-----VPTFLLHQYDLKYLDLSHNNL  135 (136)
Q Consensus        72 ~~~~~~~~l~~l~l~~~~~~~~~~------~-~~~~~L~~l~l~~n~~~~-----~~~~~~~~~~L~~l~l~~n~l  135 (136)
                      ..+..+++|+.++++++.+.+.++      + ...++|+.+.+.+|.++.     +...+...+.|+.|++++|.+
T Consensus       235 kaL~s~~~L~El~l~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~l  310 (382)
T KOG1909|consen  235 KALSSWPHLRELNLGDCLLENEGAIAFVDALKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNRL  310 (382)
T ss_pred             HHhcccchheeecccccccccccHHHHHHHHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCcccc
Confidence            246678899999999988766652      1 446799999999999932     333556678899999999987

>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]

Probab=98.78  E-value=1e-08  Score=65.51  Aligned_cols=133  Identities=17%  Similarity=0.227  Sum_probs=96.9

Q ss_pred             CCCCcccEEEcCCCcccccCccc----ccCCCcccEEEccCCcccc----ccchhh---------hccCCCCEEEccCCc
Q 039528            2 CELKNLFELNLKGNNVEGHLPNC----LKYLSHLKVFDISQNQLSG----SLSSTI---------TSLTSLEYLDLSYNN   64 (136)
Q Consensus         2 ~~l~~L~~l~l~~~~l~~~~~~~----~~~l~~L~~L~l~~~~~~~----~~~~~~---------~~~~~l~~l~l~~~~   64 (136)
                      ..||+++.+++++|.+....|+.    ++....|.+|.+++|.+.-    .+..++         ..-+.|+.+.+.+|+
T Consensus        89 lkcp~l~~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrNR  168 (388)
T COG5238          89 LKCPRLQKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRNR  168 (388)
T ss_pred             hcCCcceeeeccccccCcccchHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEeccch
Confidence            46899999999999998776654    4677889999999997741    111111         235789999999999


Q ss_pred             CcCCCChH----hhhcCccceEEEeccceeeecc-------CCCCCccccEEEcCCCCCCC-----CChhhhcCCCCcEE
Q 039528           65 FEGPCPLS----LLAHHSKLEVLVLSSTILVKTE-------NFLPTFQLKELGLANCSLNV-----VPTFLLHQYDLKYL  128 (136)
Q Consensus        65 ~~~~~~~~----~~~~~~~l~~l~l~~~~~~~~~-------~~~~~~~L~~l~l~~n~~~~-----~~~~~~~~~~L~~l  128 (136)
                      +. ..+..    .+.+.-.++.+.+..|++.+.+       ....+.+|+.|++++|.++.     +..++..|+.|+.|
T Consensus       169 le-ngs~~~~a~~l~sh~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~~lrEL  247 (388)
T COG5238         169 LE-NGSKELSAALLESHENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWNLLREL  247 (388)
T ss_pred             hc-cCcHHHHHHHHHhhcCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhcccchhhhc
Confidence            96 33332    2334457899999999998775       12445589999999999842     33466778888888


Q ss_pred             EcCCCcC
Q 039528          129 DLSHNNL  135 (136)
Q Consensus       129 ~l~~n~l  135 (136)
                      .+..|-+
T Consensus       248 ~lnDCll  254 (388)
T COG5238         248 RLNDCLL  254 (388)
T ss_pred             cccchhh
Confidence            8887755

>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]

Probab=98.77  E-value=5.5e-11  Score=84.19  Aligned_cols=124  Identities=26%  Similarity=0.273  Sum_probs=80.7

Q ss_pred             ccEEEcCCCcccccCcccccCCCcccEEEccCCccccccchhhhccCCCCEEEccCCcCcCCCChHhhhcCccceEEEec
Q 039528            7 LFELNLKGNNVEGHLPNCLKYLSHLKVFDISQNQLSGSLSSTITSLTSLEYLDLSYNNFEGPCPLSLLAHHSKLEVLVLS   86 (136)
Q Consensus         7 L~~l~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~~l~~l~l~   86 (136)
                      |...++++|.+. .+..++.-++.++.|++++|+++..  +.+..++.|.+||++.|.+. .+|. +-..-..|..|.+.
T Consensus       166 L~~a~fsyN~L~-~mD~SLqll~ale~LnLshNk~~~v--~~Lr~l~~LkhLDlsyN~L~-~vp~-l~~~gc~L~~L~lr  240 (1096)
T KOG1859|consen  166 LATASFSYNRLV-LMDESLQLLPALESLNLSHNKFTKV--DNLRRLPKLKHLDLSYNCLR-HVPQ-LSMVGCKLQLLNLR  240 (1096)
T ss_pred             HhhhhcchhhHH-hHHHHHHHHHHhhhhccchhhhhhh--HHHHhcccccccccccchhc-cccc-cchhhhhheeeeec
Confidence            555667777776 5666666677777778877777633  36677777788888777776 3442 11122337777777


Q ss_pred             cceeeeccCCCCCccccEEEcCCCCCCCCC--hhhhcCCCCcEEEcCCCcC
Q 039528           87 STILVKTENFLPTFQLKELGLANCSLNVVP--TFLLHQYDLKYLDLSHNNL  135 (136)
Q Consensus        87 ~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~--~~~~~~~~L~~l~l~~n~l  135 (136)
                      +|-.+.......+.+|+.||+++|-+....  ..++.+..|+.|.+.+|++
T Consensus       241 nN~l~tL~gie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl  291 (1096)
T KOG1859|consen  241 NNALTTLRGIENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPL  291 (1096)
T ss_pred             ccHHHhhhhHHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCcc
Confidence            776666655556667777777777773222  3556666777777777765

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]

Probab=98.76  E-value=5.4e-09  Score=67.73  Aligned_cols=80  Identities=33%  Similarity=0.277  Sum_probs=38.9

Q ss_pred             CCCEEEccCCcCcCCCChHhhhcCccceEEEeccceeeeccCCCCCccccEEEcCCCCCCCCCh----------------
Q 039528           54 SLEYLDLSYNNFEGPCPLSLLAHHSKLEVLVLSSTILVKTENFLPTFQLKELGLANCSLNVVPT----------------  117 (136)
Q Consensus        54 ~l~~l~l~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~----------------  117 (136)
                      .|..+|+++|.++ .+..+ .+-+|+++.+++++|++...+....+++|+.|++++|.++++..                
T Consensus       285 ~LtelDLS~N~I~-~iDES-vKL~Pkir~L~lS~N~i~~v~nLa~L~~L~~LDLS~N~Ls~~~Gwh~KLGNIKtL~La~N  362 (490)
T KOG1259|consen  285 ELTELDLSGNLIT-QIDES-VKLAPKLRRLILSQNRIRTVQNLAELPQLQLLDLSGNLLAECVGWHLKLGNIKTLKLAQN  362 (490)
T ss_pred             hhhhccccccchh-hhhhh-hhhccceeEEeccccceeeehhhhhcccceEeecccchhHhhhhhHhhhcCEeeeehhhh
Confidence            3444555555544 22222 33445555555555555444444444455555555554432222                


Q ss_pred             ------hhhcCCCCcEEEcCCCcC
Q 039528          118 ------FLLHQYDLKYLDLSHNNL  135 (136)
Q Consensus       118 ------~~~~~~~L~~l~l~~n~l  135 (136)
                            .+.++.+|..||+++|.+
T Consensus       363 ~iE~LSGL~KLYSLvnLDl~~N~I  386 (490)
T KOG1259|consen  363 KIETLSGLRKLYSLVNLDLSSNQI  386 (490)
T ss_pred             hHhhhhhhHhhhhheeccccccch
Confidence                  344555666677766654

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=98.75  E-value=1.6e-08  Score=47.28  Aligned_cols=36  Identities=33%  Similarity=0.456  Sum_probs=27.0

Q ss_pred             cccEEEcCCCCCCCCChhhhcCCCCcEEEcCCCcCC
Q 039528          101 QLKELGLANCSLNVVPTFLLHQYDLKYLDLSHNNLV  136 (136)
Q Consensus       101 ~L~~l~l~~n~~~~~~~~~~~~~~L~~l~l~~n~l~  136 (136)
                      +|++|++++|.++++|..++++++|+.|++++|.++
T Consensus         2 ~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N~i~   37 (44)
T PF12799_consen    2 NLEELDLSNNQITDLPPELSNLPNLETLNLSNNPIS   37 (44)
T ss_dssp             T-SEEEETSSS-SSHGGHGTTCTTSSEEEETSSCCS
T ss_pred             cceEEEccCCCCcccCchHhCCCCCCEEEecCCCCC
Confidence            577888888888888777788888888888888764

...

>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]

Probab=98.73  E-value=3e-08  Score=60.58  Aligned_cols=99  Identities=19%  Similarity=0.242  Sum_probs=50.1

Q ss_pred             cccEEEccCCccccccchhhhccCCCCEEEccCCcCcCCCChHhhhcCccceEEEeccceeeecc---CCCCCccccEEE
Q 039528           30 HLKVFDISQNQLSGSLSSTITSLTSLEYLDLSYNNFEGPCPLSLLAHHSKLEVLVLSSTILVKTE---NFLPTFQLKELG  106 (136)
Q Consensus        30 ~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~---~~~~~~~L~~l~  106 (136)
                      +...+++.+|.+..  .+.|..+++|.+|.++.|+++ .+....-..++.+..|.+.+|.+...+   ....+++|+.|.
T Consensus        43 ~~d~iDLtdNdl~~--l~~lp~l~rL~tLll~nNrIt-~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~Lt  119 (233)
T KOG1644|consen   43 QFDAIDLTDNDLRK--LDNLPHLPRLHTLLLNNNRIT-RIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYLT  119 (233)
T ss_pred             ccceecccccchhh--cccCCCccccceEEecCCcce-eeccchhhhccccceEEecCcchhhhhhcchhccCCccceee
Confidence            44455555555431  234455555666666666655 222233334455566666665543332   234444566666


Q ss_pred             cCCCCCCCCCh----hhhcCCCCcEEEcC
Q 039528          107 LANCSLNVVPT----FLLHQYDLKYLDLS  131 (136)
Q Consensus       107 l~~n~~~~~~~----~~~~~~~L~~l~l~  131 (136)
                      +-+|.++..+.    +++.+++|+.||++
T Consensus       120 ll~Npv~~k~~YR~yvl~klp~l~~LDF~  148 (233)
T KOG1644|consen  120 LLGNPVEHKKNYRLYVLYKLPSLRTLDFQ  148 (233)
T ss_pred             ecCCchhcccCceeEEEEecCcceEeehh
Confidence            66666543332    45556666666654

>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]

Probab=98.71  E-value=3.2e-08  Score=60.46  Aligned_cols=105  Identities=22%  Similarity=0.247  Sum_probs=81.5

Q ss_pred             CcccEEEcCCCcccccCcccccCCCcccEEEccCCccccccchhhhccCCCCEEEccCCcCcCCCChHhhhcCccceEEE
Q 039528            5 KNLFELNLKGNNVEGHLPNCLKYLSHLKVFDISQNQLSGSLSSTITSLTSLEYLDLSYNNFEGPCPLSLLAHHSKLEVLV   84 (136)
Q Consensus         5 ~~L~~l~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~~l~~l~   84 (136)
                      .+...+|+++|.+.. . ..|..++.|++|.+++|.|+.+.|.--..++++..|.+.+|.+..-........+|+|+.+.
T Consensus        42 d~~d~iDLtdNdl~~-l-~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~Lt  119 (233)
T KOG1644|consen   42 DQFDAIDLTDNDLRK-L-DNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYLT  119 (233)
T ss_pred             cccceecccccchhh-c-ccCCCccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcchhccCCccceee
Confidence            456778999998873 2 34678899999999999999776666666788999999999997433334477899999999


Q ss_pred             eccceeeecc-----CCCCCccccEEEcCCCC
Q 039528           85 LSSTILVKTE-----NFLPTFQLKELGLANCS  111 (136)
Q Consensus        85 l~~~~~~~~~-----~~~~~~~L~~l~l~~n~  111 (136)
                      +-+|.+....     ..+..+++++||.+.-.
T Consensus       120 ll~Npv~~k~~YR~yvl~klp~l~~LDF~kVt  151 (233)
T KOG1644|consen  120 LLGNPVEHKKNYRLYVLYKLPSLRTLDFQKVT  151 (233)
T ss_pred             ecCCchhcccCceeEEEEecCcceEeehhhhh
Confidence            9999887665     33667789999876543

>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]

Probab=98.71  E-value=3.2e-09  Score=72.64  Aligned_cols=122  Identities=28%  Similarity=0.338  Sum_probs=65.9

Q ss_pred             cEEEcCCCcccccCcccccCCCcccEEEccCCccccccchhhhccCCCCEEEccCCcCcCCCChHhhhcCccceEEEecc
Q 039528            8 FELNLKGNNVEGHLPNCLKYLSHLKVFDISQNQLSGSLSSTITSLTSLEYLDLSYNNFEGPCPLSLLAHHSKLEVLVLSS   87 (136)
Q Consensus         8 ~~l~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~~l~~l~l~~   87 (136)
                      +.+.+..|.+.. .-..+..+.+++.+++.+|.+.. +...+..+++|++|++++|.++...+   +..++.|+.|++.+
T Consensus        75 ~~l~l~~n~i~~-~~~~l~~~~~l~~l~l~~n~i~~-i~~~l~~~~~L~~L~ls~N~I~~i~~---l~~l~~L~~L~l~~  149 (414)
T KOG0531|consen   75 KELNLRQNLIAK-ILNHLSKLKSLEALDLYDNKIEK-IENLLSSLVNLQVLDLSFNKITKLEG---LSTLTLLKELNLSG  149 (414)
T ss_pred             Hhhccchhhhhh-hhcccccccceeeeeccccchhh-cccchhhhhcchheeccccccccccc---hhhccchhhheecc
Confidence            334444444442 22234555666666666666652 22225556666666666666652222   44555566666666


Q ss_pred             ceeeeccCCCCCccccEEEcCCCCCCCCChh-hhcCCCCcEEEcCCCc
Q 039528           88 TILVKTENFLPTFQLKELGLANCSLNVVPTF-LLHQYDLKYLDLSHNN  134 (136)
Q Consensus        88 ~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~-~~~~~~L~~l~l~~n~  134 (136)
                      |.+.....+..+..++.+++++|.+..+... ...+..++.+++.+|.
T Consensus       150 N~i~~~~~~~~l~~L~~l~l~~n~i~~ie~~~~~~~~~l~~l~l~~n~  197 (414)
T KOG0531|consen  150 NLISDISGLESLKSLKLLDLSYNRIVDIENDELSELISLEELDLGGNS  197 (414)
T ss_pred             CcchhccCCccchhhhcccCCcchhhhhhhhhhhhccchHHHhccCCc
Confidence            6666665555555666666666666444432 3455555555555554

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]

Probab=98.70  E-value=2.2e-09  Score=72.08  Aligned_cols=59  Identities=25%  Similarity=0.324  Sum_probs=37.3

Q ss_pred             CccceEEEeccceeeecc---CCCCCccccEEEcCCCCCCC--CChh-----hhcCCCCcEEEcCCCcC
Q 039528           77 HSKLEVLVLSSTILVKTE---NFLPTFQLKELGLANCSLNV--VPTF-----LLHQYDLKYLDLSHNNL  135 (136)
Q Consensus        77 ~~~l~~l~l~~~~~~~~~---~~~~~~~L~~l~l~~n~~~~--~~~~-----~~~~~~L~~l~l~~n~l  135 (136)
                      +..|+.|++++|.+.+.+   ....++.|+.|.++.|.+.+  .|+.     ....++|++|+++.|++
T Consensus       245 ~~~L~~LdLs~N~li~~~~~~~~~~l~~L~~Lnls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I  313 (505)
T KOG3207|consen  245 LQTLQELDLSNNNLIDFDQGYKVGTLPGLNQLNLSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNI  313 (505)
T ss_pred             hhHHhhccccCCcccccccccccccccchhhhhccccCcchhcCCCccchhhhcccccceeeecccCcc
Confidence            455666777776655444   23555677777777777743  2332     34567788888888876

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]

Probab=98.66  E-value=2.8e-09  Score=71.52  Aligned_cols=132  Identities=26%  Similarity=0.249  Sum_probs=67.2

Q ss_pred             CCcccEEEcCCCcccccCc--ccccCCCcccEEEccCCcccccc-chhhhccCCCCEEEccCCcCcCCCChHhhhcCccc
Q 039528            4 LKNLFELNLKGNNVEGHLP--NCLKYLSHLKVFDISQNQLSGSL-SSTITSLTSLEYLDLSYNNFEGPCPLSLLAHHSKL   80 (136)
Q Consensus         4 l~~L~~l~l~~~~l~~~~~--~~~~~l~~L~~L~l~~~~~~~~~-~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~~l   80 (136)
                      |+.++.||++.|-+..+.+  .....+|+|+.|.++.|.+.... ...-..++.+..|.++.|.+++....+....+|++
T Consensus       145 ~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~~lK~L~l~~CGls~k~V~~~~~~fPsl  224 (505)
T KOG3207|consen  145 LPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLSHLKQLVLNSCGLSWKDVQWILLTFPSL  224 (505)
T ss_pred             CCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhhhhheEEeccCCCCHHHHHHHHHhCCcH
Confidence            4445555555555443322  22334555555555555443110 01111344455555555555533333344456666


Q ss_pred             eEEEeccceeeecc--CCCCCccccEEEcCCCCCCCCC--hhhhcCCCCcEEEcCCCcC
Q 039528           81 EVLVLSSTILVKTE--NFLPTFQLKELGLANCSLNVVP--TFLLHQYDLKYLDLSHNNL  135 (136)
Q Consensus        81 ~~l~l~~~~~~~~~--~~~~~~~L~~l~l~~n~~~~~~--~~~~~~~~L~~l~l~~n~l  135 (136)
                      ..|++..|......  .......|+.|++++|.+-+.+  ..++.++.|..|+++.+.+
T Consensus       225 ~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~L~~Lnls~tgi  283 (505)
T KOG3207|consen  225 EVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFDQGYKVGTLPGLNQLNLSSTGI  283 (505)
T ss_pred             HHhhhhcccccceecchhhhhhHHhhccccCCcccccccccccccccchhhhhccccCc
Confidence            66666666321111  1233446778888888774444  3667777777777776654

>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]

Probab=98.62  E-value=4.9e-09  Score=71.70  Aligned_cols=107  Identities=33%  Similarity=0.404  Sum_probs=82.2

Q ss_pred             CCCCcccEEEcCCCcccccCcccccCCCcccEEEccCCccccccchhhhccCCCCEEEccCCcCcCCCChHhhhcCccce
Q 039528            2 CELKNLFELNLKGNNVEGHLPNCLKYLSHLKVFDISQNQLSGSLSSTITSLTSLEYLDLSYNNFEGPCPLSLLAHHSKLE   81 (136)
Q Consensus         2 ~~l~~L~~l~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~~l~   81 (136)
                      ..+++++.+++.+|.+.. +...+..+++|++|++++|.|+..  .++..++.|+.|++.+|.+. .+. + +..++.++
T Consensus        92 ~~~~~l~~l~l~~n~i~~-i~~~l~~~~~L~~L~ls~N~I~~i--~~l~~l~~L~~L~l~~N~i~-~~~-~-~~~l~~L~  165 (414)
T KOG0531|consen   92 SKLKSLEALDLYDNKIEK-IENLLSSLVNLQVLDLSFNKITKL--EGLSTLTLLKELNLSGNLIS-DIS-G-LESLKSLK  165 (414)
T ss_pred             ccccceeeeeccccchhh-cccchhhhhcchheeccccccccc--cchhhccchhhheeccCcch-hcc-C-Cccchhhh
Confidence            356788999999999984 333367789999999999998754  45666777999999999997 333 2 55688899


Q ss_pred             EEEeccceeeeccC--CCCCccccEEEcCCCCCCC
Q 039528           82 VLVLSSTILVKTEN--FLPTFQLKELGLANCSLNV  114 (136)
Q Consensus        82 ~l~l~~~~~~~~~~--~~~~~~L~~l~l~~n~~~~  114 (136)
                      .+++++|.+.....  ...+.+++.+++.+|.+..
T Consensus       166 ~l~l~~n~i~~ie~~~~~~~~~l~~l~l~~n~i~~  200 (414)
T KOG0531|consen  166 LLDLSYNRIVDIENDELSELISLEELDLGGNSIRE  200 (414)
T ss_pred             cccCCcchhhhhhhhhhhhccchHHHhccCCchhc
Confidence            99999988877765  3666688888888887744

>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]

Probab=98.56  E-value=7.5e-09  Score=59.70  Aligned_cols=84  Identities=20%  Similarity=0.242  Sum_probs=36.5

Q ss_pred             cccEEEccCCccccccchhhh-ccCCCCEEEccCCcCcCCCChHhhhcCccceEEEeccceeeecc-CCCCCccccEEEc
Q 039528           30 HLKVFDISQNQLSGSLSSTIT-SLTSLEYLDLSYNNFEGPCPLSLLAHHSKLEVLVLSSTILVKTE-NFLPTFQLKELGL  107 (136)
Q Consensus        30 ~L~~L~l~~~~~~~~~~~~~~-~~~~l~~l~l~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~-~~~~~~~L~~l~l  107 (136)
                      .|...++++|.+. ..|..|. .++....+++.+|.++ .+|.+ +..++.|+.++++.|.+...+ .+.++.++..|+.
T Consensus        54 el~~i~ls~N~fk-~fp~kft~kf~t~t~lNl~~neis-dvPeE-~Aam~aLr~lNl~~N~l~~~p~vi~~L~~l~~Lds  130 (177)
T KOG4579|consen   54 ELTKISLSDNGFK-KFPKKFTIKFPTATTLNLANNEIS-DVPEE-LAAMPALRSLNLRFNPLNAEPRVIAPLIKLDMLDS  130 (177)
T ss_pred             eEEEEecccchhh-hCCHHHhhccchhhhhhcchhhhh-hchHH-HhhhHHhhhcccccCccccchHHHHHHHhHHHhcC
Confidence            3444455555544 2333332 2234444555555554 34444 445555555555554443322 1222334444444


Q ss_pred             CCCCCCCCC
Q 039528          108 ANCSLNVVP  116 (136)
Q Consensus       108 ~~n~~~~~~  116 (136)
                      .+|.+..++
T Consensus       131 ~~na~~eid  139 (177)
T KOG4579|consen  131 PENARAEID  139 (177)
T ss_pred             CCCccccCc
Confidence            444443333

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=98.49  E-value=2.4e-07  Score=43.25  Aligned_cols=36  Identities=39%  Similarity=0.610  Sum_probs=19.2

Q ss_pred             cccEEEcCCCcccccCcccccCCCcccEEEccCCccc
Q 039528            6 NLFELNLKGNNVEGHLPNCLKYLSHLKVFDISQNQLS   42 (136)
Q Consensus         6 ~L~~l~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~   42 (136)
                      +|++|++++|.++ .+|+.+..+++|++|++++|.++
T Consensus         2 ~L~~L~l~~N~i~-~l~~~l~~l~~L~~L~l~~N~i~   37 (44)
T PF12799_consen    2 NLEELDLSNNQIT-DLPPELSNLPNLETLNLSNNPIS   37 (44)
T ss_dssp             T-SEEEETSSS-S-SHGGHGTTCTTSSEEEETSSCCS
T ss_pred             cceEEEccCCCCc-ccCchHhCCCCCCEEEecCCCCC
Confidence            4556666666665 33444555666666666665554

...

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]

Probab=98.42  E-value=1.9e-07  Score=69.09  Aligned_cols=86  Identities=31%  Similarity=0.429  Sum_probs=67.7

Q ss_pred             CCCCcccEEEcCCCcccccCcccccCCCcccEEEccCCccccccchhhhccCCCCEEEccCCcCcCCCChHhhhcCccce
Q 039528            2 CELKNLFELNLKGNNVEGHLPNCLKYLSHLKVFDISQNQLSGSLSSTITSLTSLEYLDLSYNNFEGPCPLSLLAHHSKLE   81 (136)
Q Consensus         2 ~~l~~L~~l~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~~l~   81 (136)
                      ..++.|++||+++|.-.+.+|..++.+-+|++|+++++.++ .+|.++..+..|++|++..+.....++ .....+++|+
T Consensus       568 ~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~I~-~LP~~l~~Lk~L~~Lnl~~~~~l~~~~-~i~~~L~~Lr  645 (889)
T KOG4658|consen  568 RSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTGIS-HLPSGLGNLKKLIYLNLEVTGRLESIP-GILLELQSLR  645 (889)
T ss_pred             hhCcceEEEECCCCCccCcCChHHhhhhhhhcccccCCCcc-ccchHHHHHHhhheecccccccccccc-chhhhccccc
Confidence            45788888999887766688888888999999999888887 788888888889999888777654443 4455688888


Q ss_pred             EEEeccce
Q 039528           82 VLVLSSTI   89 (136)
Q Consensus        82 ~l~l~~~~   89 (136)
                      ++.+....
T Consensus       646 ~L~l~~s~  653 (889)
T KOG4658|consen  646 VLRLPRSA  653 (889)
T ss_pred             EEEeeccc
Confidence            88877743

>KOG2982 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.36  E-value=7.3e-08  Score=62.39  Aligned_cols=85  Identities=25%  Similarity=0.279  Sum_probs=64.4

Q ss_pred             CCcccEEEcCCCccccc--CcccccCCCcccEEEccCCccccccchhh-hccCCCCEEEccCCcCcCCCChHhhhcCccc
Q 039528            4 LKNLFELNLKGNNVEGH--LPNCLKYLSHLKVFDISQNQLSGSLSSTI-TSLTSLEYLDLSYNNFEGPCPLSLLAHHSKL   80 (136)
Q Consensus         4 l~~L~~l~l~~~~l~~~--~~~~~~~l~~L~~L~l~~~~~~~~~~~~~-~~~~~l~~l~l~~~~~~~~~~~~~~~~~~~l   80 (136)
                      ...++++|+.+|.++++  +...+.++|.+++|+++.|.+.. ..+.+ -...+++.+.+++..+.+....+....+|.+
T Consensus        70 ~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s-~I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~v  148 (418)
T KOG2982|consen   70 VTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSS-DIKSLPLPLKNLRVLVLNGTGLSWTQSTSSLDDLPKV  148 (418)
T ss_pred             hhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCC-ccccCcccccceEEEEEcCCCCChhhhhhhhhcchhh
Confidence            45577889999998864  23455789999999999998763 22333 3667889999999888776666667788899


Q ss_pred             eEEEeccce
Q 039528           81 EVLVLSSTI   89 (136)
Q Consensus        81 ~~l~l~~~~   89 (136)
                      +.++++.|.
T Consensus       149 telHmS~N~  157 (418)
T KOG2982|consen  149 TELHMSDNS  157 (418)
T ss_pred             hhhhhccch
Confidence            999888873

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=98.35  E-value=4.7e-07  Score=65.48  Aligned_cols=128  Identities=22%  Similarity=0.293  Sum_probs=88.6

Q ss_pred             CcccEEEcCCCccc-ccCcccc-cCCCcccEEEccCCcccc-ccchhhhccCCCCEEEccCCcCcCCCChHhhhcCccce
Q 039528            5 KNLFELNLKGNNVE-GHLPNCL-KYLSHLKVFDISQNQLSG-SLSSTITSLTSLEYLDLSYNNFEGPCPLSLLAHHSKLE   81 (136)
Q Consensus         5 ~~L~~l~l~~~~l~-~~~~~~~-~~l~~L~~L~l~~~~~~~-~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~~l~   81 (136)
                      .+|+.|++++...- ..++..+ .-+|+|+.|.+.+..+.. ........+++|..||++++.++ .+  +..+.+++|+
T Consensus       122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~-nl--~GIS~LknLq  198 (699)
T KOG3665|consen  122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNIS-NL--SGISRLKNLQ  198 (699)
T ss_pred             HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCcc-Cc--HHHhccccHH
Confidence            35788888775442 2334333 458999999998876642 22334457889999999999987 33  3477889999


Q ss_pred             EEEeccceeeecc---CCCCCccccEEEcCCCCCCCCCh-------hhhcCCCCcEEEcCCCcC
Q 039528           82 VLVLSSTILVKTE---NFLPTFQLKELGLANCSLNVVPT-------FLLHQYDLKYLDLSHNNL  135 (136)
Q Consensus        82 ~l~l~~~~~~~~~---~~~~~~~L~~l~l~~n~~~~~~~-------~~~~~~~L~~l~l~~n~l  135 (136)
                      .|.+.+=.+..-.   ....+.+|+.||++.......+.       .-..+++|+.||.|++.+
T Consensus       199 ~L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi  262 (699)
T KOG3665|consen  199 VLSMRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDI  262 (699)
T ss_pred             HHhccCCCCCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcch
Confidence            9888774443322   45678899999999887743332       123478999999998765

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]

Probab=98.31  E-value=9.6e-07  Score=65.49  Aligned_cols=106  Identities=29%  Similarity=0.303  Sum_probs=68.1

Q ss_pred             CCcccEEEcCCCc--ccccCcccccCCCcccEEEccCCccccccchhhhccCCCCEEEccCCcCcCCCChHhhhcCccce
Q 039528            4 LKNLFELNLKGNN--VEGHLPNCLKYLSHLKVFDISQNQLSGSLSSTITSLTSLEYLDLSYNNFEGPCPLSLLAHHSKLE   81 (136)
Q Consensus         4 l~~L~~l~l~~~~--l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~~l~   81 (136)
                      .+.|+.|-+.+|.  +.......|..++.|+.||+++|.--+.+|..++.+.+|++|++.++.+. .+|.. ++.+.+|.
T Consensus       544 ~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~I~-~LP~~-l~~Lk~L~  621 (889)
T KOG4658|consen  544 NPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTGIS-HLPSG-LGNLKKLI  621 (889)
T ss_pred             CCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccCCCcc-ccchH-HHHHHhhh
Confidence            3456666666664  33233344666778888888776544577777777888888888777776 56654 66777778


Q ss_pred             EEEeccceeeec--cCCCCCccccEEEcCCCC
Q 039528           82 VLVLSSTILVKT--ENFLPTFQLKELGLANCS  111 (136)
Q Consensus        82 ~l~l~~~~~~~~--~~~~~~~~L~~l~l~~n~  111 (136)
                      +|++..+.....  .....+.+|++|.+....
T Consensus       622 ~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~  653 (889)
T KOG4658|consen  622 YLNLEVTGRLESIPGILLELQSLRVLRLPRSA  653 (889)
T ss_pred             eeccccccccccccchhhhcccccEEEeeccc
Confidence            877777543222  223446677777775554

>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]

Probab=98.30  E-value=2.9e-08  Score=70.95  Aligned_cols=100  Identities=31%  Similarity=0.305  Sum_probs=75.4

Q ss_pred             ccEEEccCCccccccchhhhccCCCCEEEccCCcCcCCCChHhhhcCccceEEEeccceeeeccCC-CCCccccEEEcCC
Q 039528           31 LKVFDISQNQLSGSLSSTITSLTSLEYLDLSYNNFEGPCPLSLLAHHSKLEVLVLSSTILVKTENF-LPTFQLKELGLAN  109 (136)
Q Consensus        31 L~~L~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~-~~~~~L~~l~l~~  109 (136)
                      |.+.+.+.|.+. .+-..+.-++.++.|++++|+++ ..  ..+..+++|++||+++|..+..+.+ ...++|..|.+++
T Consensus       166 L~~a~fsyN~L~-~mD~SLqll~ale~LnLshNk~~-~v--~~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc~L~~L~lrn  241 (1096)
T KOG1859|consen  166 LATASFSYNRLV-LMDESLQLLPALESLNLSHNKFT-KV--DNLRRLPKLKHLDLSYNCLRHVPQLSMVGCKLQLLNLRN  241 (1096)
T ss_pred             HhhhhcchhhHH-hHHHHHHHHHHhhhhccchhhhh-hh--HHHHhcccccccccccchhccccccchhhhhheeeeecc
Confidence            334444444443 44456677888999999999997 33  3588999999999999988776644 3445799999999


Q ss_pred             CCCCCCChhhhcCCCCcEEEcCCCcC
Q 039528          110 CSLNVVPTFLLHQYDLKYLDLSHNNL  135 (136)
Q Consensus       110 n~~~~~~~~~~~~~~L~~l~l~~n~l  135 (136)
                      |.++.+. .+.++++|+.||++.|-+
T Consensus       242 N~l~tL~-gie~LksL~~LDlsyNll  266 (1096)
T KOG1859|consen  242 NALTTLR-GIENLKSLYGLDLSYNLL  266 (1096)
T ss_pred             cHHHhhh-hHHhhhhhhccchhHhhh
Confidence            9997764 567889999999998865

>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]

Probab=98.25  E-value=3.6e-08  Score=56.95  Aligned_cols=106  Identities=22%  Similarity=0.261  Sum_probs=72.3

Q ss_pred             CCcccEEEccCCccccccchhhh---ccCCCCEEEccCCcCcCCCChHhhhcCccceEEEeccceeeecc-CCCCCcccc
Q 039528           28 LSHLKVFDISQNQLSGSLSSTIT---SLTSLEYLDLSYNNFEGPCPLSLLAHHSKLEVLVLSSTILVKTE-NFLPTFQLK  103 (136)
Q Consensus        28 l~~L~~L~l~~~~~~~~~~~~~~---~~~~l~~l~l~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~-~~~~~~~L~  103 (136)
                      -..++.+++++|++- .+++...   ....|...++++|.+. ..|..+-...+.++++++.+|.+.+.+ .+..++.|+
T Consensus        26 akE~h~ldLssc~lm-~i~davy~l~~~~el~~i~ls~N~fk-~fp~kft~kf~t~t~lNl~~neisdvPeE~Aam~aLr  103 (177)
T KOG4579|consen   26 AKELHFLDLSSCQLM-YIADAVYMLSKGYELTKISLSDNGFK-KFPKKFTIKFPTATTLNLANNEISDVPEELAAMPALR  103 (177)
T ss_pred             HHHhhhcccccchhh-HHHHHHHHHhCCceEEEEecccchhh-hCCHHHhhccchhhhhhcchhhhhhchHHHhhhHHhh
Confidence            345667777777664 3344433   3445566678888887 456555555667888888888776665 345666888


Q ss_pred             EEEcCCCCCCCCChhhhcCCCCcEEEcCCCcC
Q 039528          104 ELGLANCSLNVVPTFLLHQYDLKYLDLSHNNL  135 (136)
Q Consensus       104 ~l~l~~n~~~~~~~~~~~~~~L~~l~l~~n~l  135 (136)
                      .++++.|.+...|..+..+.++-.|+..+|.+
T Consensus       104 ~lNl~~N~l~~~p~vi~~L~~l~~Lds~~na~  135 (177)
T KOG4579|consen  104 SLNLRFNPLNAEPRVIAPLIKLDMLDSPENAR  135 (177)
T ss_pred             hcccccCccccchHHHHHHHhHHHhcCCCCcc
Confidence            88888888877777777777777777776653

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=98.19  E-value=9.8e-07  Score=63.90  Aligned_cols=105  Identities=26%  Similarity=0.274  Sum_probs=78.0

Q ss_pred             CcccEEEccCCcc-ccccchhhh-ccCCCCEEEccCCcCcCCCChHhhhcCccceEEEeccceeeeccCCCCCccccEEE
Q 039528           29 SHLKVFDISQNQL-SGSLSSTIT-SLTSLEYLDLSYNNFEGPCPLSLLAHHSKLEVLVLSSTILVKTENFLPTFQLKELG  106 (136)
Q Consensus        29 ~~L~~L~l~~~~~-~~~~~~~~~-~~~~l~~l~l~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~L~~l~  106 (136)
                      .+|++|++++... ....+..++ -+|+|+.|.+.+-.+...--.....++|+|..||++++.+.+......+.+|++|.
T Consensus       122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl~GIS~LknLq~L~  201 (699)
T KOG3665|consen  122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNLSGISRLKNLQVLS  201 (699)
T ss_pred             HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCcHHHhccccHHHHh
Confidence            4688888877532 222233333 47899999998877753222345678899999999999888887778888999999


Q ss_pred             cCCCCCCCCC--hhhhcCCCCcEEEcCCC
Q 039528          107 LANCSLNVVP--TFLLHQYDLKYLDLSHN  133 (136)
Q Consensus       107 l~~n~~~~~~--~~~~~~~~L~~l~l~~n  133 (136)
                      +++-.+..-.  ..+..+++|+.||+|..
T Consensus       202 mrnLe~e~~~~l~~LF~L~~L~vLDIS~~  230 (699)
T KOG3665|consen  202 MRNLEFESYQDLIDLFNLKKLRVLDISRD  230 (699)
T ss_pred             ccCCCCCchhhHHHHhcccCCCeeecccc
Confidence            9988884423  47888999999999864

>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=98.14  E-value=1.8e-06  Score=54.70  Aligned_cols=104  Identities=26%  Similarity=0.328  Sum_probs=71.9

Q ss_pred             ccccCCCcccEEEccCCccccccchhhhccCCCCEEEccCC--cCcCCCChHhhhcCccceEEEeccceeeeccCC---C
Q 039528           23 NCLKYLSHLKVFDISQNQLSGSLSSTITSLTSLEYLDLSYN--NFEGPCPLSLLAHHSKLEVLVLSSTILVKTENF---L   97 (136)
Q Consensus        23 ~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~l~~~--~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~---~   97 (136)
                      ........|+.+.+.+..++..  ..+..+++|+.|.++.|  +..+.++.- ...+|+++++++++|.+++....   .
T Consensus        37 gl~d~~~~le~ls~~n~gltt~--~~~P~Lp~LkkL~lsdn~~~~~~~l~vl-~e~~P~l~~l~ls~Nki~~lstl~pl~  113 (260)
T KOG2739|consen   37 GLTDEFVELELLSVINVGLTTL--TNFPKLPKLKKLELSDNYRRVSGGLEVL-AEKAPNLKVLNLSGNKIKDLSTLRPLK  113 (260)
T ss_pred             cccccccchhhhhhhccceeec--ccCCCcchhhhhcccCCcccccccceeh-hhhCCceeEEeecCCccccccccchhh
Confidence            3344456677777777666532  45677889999999999  444444432 34559999999999998876544   3


Q ss_pred             CCccccEEEcCCCCCCCCCh----hhhcCCCCcEEE
Q 039528           98 PTFQLKELGLANCSLNVVPT----FLLHQYDLKYLD  129 (136)
Q Consensus        98 ~~~~L~~l~l~~n~~~~~~~----~~~~~~~L~~l~  129 (136)
                      ...+|..|++.+|..+.+..    ++.-+++|+++|
T Consensus       114 ~l~nL~~Ldl~n~~~~~l~dyre~vf~ll~~L~~LD  149 (260)
T KOG2739|consen  114 ELENLKSLDLFNCSVTNLDDYREKVFLLLPSLKYLD  149 (260)
T ss_pred             hhcchhhhhcccCCccccccHHHHHHHHhhhhcccc
Confidence            44468889999998855443    455667777765

>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]

Probab=98.14  E-value=9.5e-06  Score=52.31  Aligned_cols=111  Identities=26%  Similarity=0.303  Sum_probs=67.7

Q ss_pred             ccCCCcccEEEccCCccccccchh----hhccCCCCEEEccCCcCcCCCChHh-------------hhcCccceEEEecc
Q 039528           25 LKYLSHLKVFDISQNQLSGSLSST----ITSLTSLEYLDLSYNNFEGPCPLSL-------------LAHHSKLEVLVLSS   87 (136)
Q Consensus        25 ~~~l~~L~~L~l~~~~~~~~~~~~----~~~~~~l~~l~l~~~~~~~~~~~~~-------------~~~~~~l~~l~l~~   87 (136)
                      +..||+++..++++|.+....|..    +.....+.+|.+++|.+- +.....             .+.-|.|+.+..+.
T Consensus        88 Llkcp~l~~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~NnGlG-p~aG~rigkal~~la~nKKaa~kp~Le~vicgr  166 (388)
T COG5238          88 LLKCPRLQKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNNGLG-PIAGGRIGKALFHLAYNKKAADKPKLEVVICGR  166 (388)
T ss_pred             HhcCCcceeeeccccccCcccchHHHHHHhcCCCceeEEeecCCCC-ccchhHHHHHHHHHHHHhhhccCCCceEEEecc
Confidence            456777777777777765444433    345566777777776652 221111             12345677777777


Q ss_pred             ceeeeccC------CCCCccccEEEcCCCCCCC--CC----hhhhcCCCCcEEEcCCCcCC
Q 039528           88 TILVKTEN------FLPTFQLKELGLANCSLNV--VP----TFLLHQYDLKYLDLSHNNLV  136 (136)
Q Consensus        88 ~~~~~~~~------~~~~~~L~~l~l~~n~~~~--~~----~~~~~~~~L~~l~l~~n~l~  136 (136)
                      |+....+.      +..-..+.++.++.|.|..  +.    ..++.+.+|+.||++.|.+|
T Consensus       167 NRlengs~~~~a~~l~sh~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft  227 (388)
T COG5238         167 NRLENGSKELSAALLESHENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFT  227 (388)
T ss_pred             chhccCcHHHHHHHHHhhcCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchh
Confidence            76655441      1222367788888888732  11    13456889999999999875

>KOG2982 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.05  E-value=4.9e-06  Score=54.22  Aligned_cols=135  Identities=21%  Similarity=0.207  Sum_probs=86.0

Q ss_pred             CCCCcccEEEcCCCcccccCcccccCCCcccEEEccCCccccccch-hhhccCCCCEEEccCCcCcC-----C-------
Q 039528            2 CELKNLFELNLKGNNVEGHLPNCLKYLSHLKVFDISQNQLSGSLSS-TITSLTSLEYLDLSYNNFEG-----P-------   68 (136)
Q Consensus         2 ~~l~~L~~l~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~-~~~~~~~l~~l~l~~~~~~~-----~-------   68 (136)
                      .++|.|+.|+++.|++...+...-....+|+.+-+++..+.+.... .+..++.++.+.++.|.+..     .       
T Consensus        94 e~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~vtelHmS~N~~rq~n~Dd~c~e~~s~  173 (418)
T KOG2982|consen   94 EQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLSWTQSTSSLDDLPKVTELHMSDNSLRQLNLDDNCIEDWST  173 (418)
T ss_pred             hcCccceEeeccCCcCCCccccCcccccceEEEEEcCCCCChhhhhhhhhcchhhhhhhhccchhhhhccccccccccch
Confidence            4689999999999999854332224667899999999887654433 34567778888888773320     0       


Q ss_pred             ---------CChHhh-------hcCccceEEEeccceeeecc---CCCCCccccEEEcCCCCCCCCC--hhhhcCCCCcE
Q 039528           69 ---------CPLSLL-------AHHSKLEVLVLSSTILVKTE---NFLPTFQLKELGLANCSLNVVP--TFLLHQYDLKY  127 (136)
Q Consensus        69 ---------~~~~~~-------~~~~~l~~l~l~~~~~~~~~---~~~~~~~L~~l~l~~n~~~~~~--~~~~~~~~L~~  127 (136)
                               .+...|       ...|++..+-+..+++.+..   .....+.+..|.++-+.+.++.  +++.++++++.
T Consensus       174 ~v~tlh~~~c~~~~w~~~~~l~r~Fpnv~sv~v~e~PlK~~s~ek~se~~p~~~~LnL~~~~idswasvD~Ln~f~~l~d  253 (418)
T KOG2982|consen  174 EVLTLHQLPCLEQLWLNKNKLSRIFPNVNSVFVCEGPLKTESSEKGSEPFPSLSCLNLGANNIDSWASVDALNGFPQLVD  253 (418)
T ss_pred             hhhhhhcCCcHHHHHHHHHhHHhhcccchheeeecCcccchhhcccCCCCCcchhhhhcccccccHHHHHHHcCCchhhe
Confidence                     011111       12345555555555554432   2233446667788888886654  37788888888


Q ss_pred             EEcCCCcCC
Q 039528          128 LDLSHNNLV  136 (136)
Q Consensus       128 l~l~~n~l~  136 (136)
                      |.++++++.
T Consensus       254 lRv~~~Pl~  262 (418)
T KOG2982|consen  254 LRVSENPLS  262 (418)
T ss_pred             eeccCCccc
Confidence            888888763

>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A

Probab=98.02  E-value=6.7e-05  Score=43.04  Aligned_cols=120  Identities=17%  Similarity=0.249  Sum_probs=57.6

Q ss_pred             CCCCCcccEEEcCCCcccccCcccccCCCcccEEEccCCccccccchhhhccCCCCEEEccCCcCcCCCChHhhhcCccc
Q 039528            1 LCELKNLFELNLKGNNVEGHLPNCLKYLSHLKVFDISQNQLSGSLSSTITSLTSLEYLDLSYNNFEGPCPLSLLAHHSKL   80 (136)
Q Consensus         1 ~~~l~~L~~l~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~~l   80 (136)
                      |.++.+|+.+.+.. .+.......|.++.+++.+.+..+ +.......|..+.+++.+.+.. ... .++...+..++++
T Consensus         8 F~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~-~i~~~~F~~~~~l   83 (129)
T PF13306_consen    8 FYNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLK-SIGDNAFSNCTNL   83 (129)
T ss_dssp             TTT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT--EE-TTTTTT-TTE
T ss_pred             HhCCCCCCEEEECC-CeeEeChhhccccccccccccccc-ccccceeeeecccccccccccc-ccc-ccccccccccccc
Confidence            34566788888774 455555667888888888888765 5544445667777788888865 332 2344456677888


Q ss_pred             eEEEeccceee-eccCCCCCccccEEEcCCCCCCCCC-hhhhcCCCCc
Q 039528           81 EVLVLSSTILV-KTENFLPTFQLKELGLANCSLNVVP-TFLLHQYDLK  126 (136)
Q Consensus        81 ~~l~l~~~~~~-~~~~~~~~~~L~~l~l~~n~~~~~~-~~~~~~~~L~  126 (136)
                      +.+.+..+... ....+... .++.+.+.. .+..++ .++..+++|+
T Consensus        84 ~~i~~~~~~~~i~~~~f~~~-~l~~i~~~~-~~~~i~~~~F~~~~~l~  129 (129)
T PF13306_consen   84 KNIDIPSNITEIGSSSFSNC-NLKEINIPS-NITKIEENAFKNCTKLK  129 (129)
T ss_dssp             CEEEETTT-BEEHTTTTTT--T--EEE-TT-B-SS----GGG------
T ss_pred             cccccCccccEEchhhhcCC-CceEEEECC-CccEECCccccccccCC
Confidence            88888665222 22244444 777777654 444444 3666666653

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]

Probab=97.97  E-value=1.8e-07  Score=60.63  Aligned_cols=34  Identities=24%  Similarity=0.164  Sum_probs=15.9

Q ss_pred             CCccccEEEcCCCCC--CCCChhhhcCCCCcEEEcC
Q 039528           98 PTFQLKELGLANCSL--NVVPTFLLHQYDLKYLDLS  131 (136)
Q Consensus        98 ~~~~L~~l~l~~n~~--~~~~~~~~~~~~L~~l~l~  131 (136)
                      .++.+.+||+++|..  ...-.++.+++-|+++.++
T Consensus       311 rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lSls  346 (419)
T KOG2120|consen  311 RCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHLSLS  346 (419)
T ss_pred             hCCceeeeccccccccCchHHHHHHhcchheeeehh
Confidence            344555555555443  2222344455555555554

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]

Probab=97.97  E-value=5.8e-07  Score=58.40  Aligned_cols=80  Identities=25%  Similarity=0.210  Sum_probs=48.7

Q ss_pred             CCCEEEccCCcC--cCCCChHhhhcCccceEEEeccc-eeeecc--CCCCCccccEEEcCCCCC--CCCChhhhcCCCCc
Q 039528           54 SLEYLDLSYNNF--EGPCPLSLLAHHSKLEVLVLSST-ILVKTE--NFLPTFQLKELGLANCSL--NVVPTFLLHQYDLK  126 (136)
Q Consensus        54 ~l~~l~l~~~~~--~~~~~~~~~~~~~~l~~l~l~~~-~~~~~~--~~~~~~~L~~l~l~~n~~--~~~~~~~~~~~~L~  126 (136)
                      .+..|++++++-  ...+-+...+.+|++.++|++++ .+.+..  ++...+-|+++.++.|.-  -..--.+...+.|.
T Consensus       287 ~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lSlsRCY~i~p~~~~~l~s~psl~  366 (419)
T KOG2120|consen  287 TLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHLSLSRCYDIIPETLLELNSKPSLV  366 (419)
T ss_pred             hhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHHhcchheeeehhhhcCCChHHeeeeccCcceE
Confidence            344455554432  11222334567889999999995 344422  456666889999888763  11122567788888


Q ss_pred             EEEcCCC
Q 039528          127 YLDLSHN  133 (136)
Q Consensus       127 ~l~l~~n  133 (136)
                      +|++.++
T Consensus       367 yLdv~g~  373 (419)
T KOG2120|consen  367 YLDVFGC  373 (419)
T ss_pred             EEEeccc
Confidence            8887654

>PRK15386 type III secretion protein GogB; Provisional

Probab=97.53  E-value=0.00082  Score=46.18  Aligned_cols=55  Identities=24%  Similarity=0.244  Sum_probs=34.7

Q ss_pred             CCCcccEEEcCCCcccccCcccccCCCcccEEEccCCccccccchhhhccCCCCEEEccCC
Q 039528            3 ELKNLFELNLKGNNVEGHLPNCLKYLSHLKVFDISQNQLSGSLSSTITSLTSLEYLDLSYN   63 (136)
Q Consensus         3 ~l~~L~~l~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~l~~~   63 (136)
                      .+.+++.|++++|.+. .+|.   -.++|+.|.+++|.--...|+.+  ..+|+.|++++|
T Consensus        50 ~~~~l~~L~Is~c~L~-sLP~---LP~sLtsL~Lsnc~nLtsLP~~L--P~nLe~L~Ls~C  104 (426)
T PRK15386         50 EARASGRLYIKDCDIE-SLPV---LPNELTEITIENCNNLTTLPGSI--PEGLEKLTVCHC  104 (426)
T ss_pred             HhcCCCEEEeCCCCCc-ccCC---CCCCCcEEEccCCCCcccCCchh--hhhhhheEccCc
Confidence            3577889999998877 4452   12358888887753322455444  246777777766

>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=97.35  E-value=0.00022  Score=45.51  Aligned_cols=39  Identities=33%  Similarity=0.456  Sum_probs=18.5

Q ss_pred             CCcccEEEcCCC--cccccCcccccCCCcccEEEccCCccc
Q 039528            4 LKNLFELNLKGN--NVEGHLPNCLKYLSHLKVFDISQNQLS   42 (136)
Q Consensus         4 l~~L~~l~l~~~--~l~~~~~~~~~~l~~L~~L~l~~~~~~   42 (136)
                      +++|+.|.++.|  ++.+.++.....+|+|+++.+++|++.
T Consensus        64 Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~  104 (260)
T KOG2739|consen   64 LPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIK  104 (260)
T ss_pred             cchhhhhcccCCcccccccceehhhhCCceeEEeecCCccc
Confidence            444555555555  333333333344455555555555443

>KOG2123 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.34  E-value=9.6e-06  Score=52.43  Aligned_cols=97  Identities=23%  Similarity=0.204  Sum_probs=70.6

Q ss_pred             CCcccEEEccCCccccccchhhhccCCCCEEEccCCcCcCCCChHhhhcCccceEEEeccceeeeccCC---CCCccccE
Q 039528           28 LSHLKVFDISQNQLSGSLSSTITSLTSLEYLDLSYNNFEGPCPLSLLAHHSKLEVLVLSSTILVKTENF---LPTFQLKE  104 (136)
Q Consensus        28 l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~---~~~~~L~~  104 (136)
                      +...+.|+.-+|.+.++  .....|+.|+.|.++-|+++ ++.  .+..+++|+++.+..|.+.+....   ..+++|+.
T Consensus        18 l~~vkKLNcwg~~L~DI--sic~kMp~lEVLsLSvNkIs-sL~--pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~   92 (388)
T KOG2123|consen   18 LENVKKLNCWGCGLDDI--SICEKMPLLEVLSLSVNKIS-SLA--PLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRT   92 (388)
T ss_pred             HHHhhhhcccCCCccHH--HHHHhcccceeEEeeccccc-cch--hHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhh
Confidence            44555666666666543  34457889999999999997 443  377899999999999988777633   67779999


Q ss_pred             EEcCCCCC-CCCC-h----hhhcCCCCcEEE
Q 039528          105 LGLANCSL-NVVP-T----FLLHQYDLKYLD  129 (136)
Q Consensus       105 l~l~~n~~-~~~~-~----~~~~~~~L~~l~  129 (136)
                      |++..|.- +.-+ .    .+..+++|+.||
T Consensus        93 LWL~ENPCc~~ag~nYR~~VLR~LPnLkKLD  123 (388)
T KOG2123|consen   93 LWLDENPCCGEAGQNYRRKVLRVLPNLKKLD  123 (388)
T ss_pred             HhhccCCcccccchhHHHHHHHHcccchhcc
Confidence            99998886 3322 2    567788888876

>KOG2123 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.29  E-value=1.1e-05  Score=52.11  Aligned_cols=83  Identities=25%  Similarity=0.269  Sum_probs=65.9

Q ss_pred             CCcccEEEcCCCcccccCcccccCCCcccEEEccCCccccccchhhhccCCCCEEEccCCcCcCCCChHhhhcCccceEE
Q 039528            4 LKNLFELNLKGNNVEGHLPNCLKYLSHLKVFDISQNQLSGSLSSTITSLTSLEYLDLSYNNFEGPCPLSLLAHHSKLEVL   83 (136)
Q Consensus         4 l~~L~~l~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~~l~~l   83 (136)
                      +...++|+..++.+.+.  .....++.|+.|.++-|.|+..  ..+..+.+|+.|++..|.+...-....++.+|+|+.|
T Consensus        18 l~~vkKLNcwg~~L~DI--sic~kMp~lEVLsLSvNkIssL--~pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~L   93 (388)
T KOG2123|consen   18 LENVKKLNCWGCGLDDI--SICEKMPLLEVLSLSVNKISSL--APLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTL   93 (388)
T ss_pred             HHHhhhhcccCCCccHH--HHHHhcccceeEEeeccccccc--hhHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhH
Confidence            45677889999998854  3346789999999999999744  5577899999999999999743334567889999999


Q ss_pred             Eecccee
Q 039528           84 VLSSTIL   90 (136)
Q Consensus        84 ~l~~~~~   90 (136)
                      ++..|+-
T Consensus        94 WL~ENPC  100 (388)
T KOG2123|consen   94 WLDENPC  100 (388)
T ss_pred             hhccCCc
Confidence            9999764

>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A

Probab=97.05  E-value=0.005  Score=35.17  Aligned_cols=106  Identities=13%  Similarity=0.232  Sum_probs=62.0

Q ss_pred             cccccCCCcccEEEccCCccccccchhhhccCCCCEEEccCCcCcCCCChHhhhcCccceEEEecccee-eeccCCCCCc
Q 039528           22 PNCLKYLSHLKVFDISQNQLSGSLSSTITSLTSLEYLDLSYNNFEGPCPLSLLAHHSKLEVLVLSSTIL-VKTENFLPTF  100 (136)
Q Consensus        22 ~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~-~~~~~~~~~~  100 (136)
                      ..+|.++.+|+.+.+.. .+..+....|..+.+++.+.+..+ +. .++...+..++.++.+.+..+.. .+...+..+.
T Consensus         5 ~~~F~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~-~i~~~~F~~~~~l~~i~~~~~~~~i~~~~F~~~~   81 (129)
T PF13306_consen    5 NNAFYNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LT-SIGDNAFSNCKSLESITFPNNLKSIGDNAFSNCT   81 (129)
T ss_dssp             TTTTTT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TS-CE-TTTTTT-TT-EEEEETSTT-EE-TTTTTT-T
T ss_pred             HHHHhCCCCCCEEEECC-CeeEeChhhccccccccccccccc-cc-ccceeeeecccccccccccccccccccccccccc
Confidence            35678888999999875 455455677888889999999875 54 45656788888899999976432 2223566677


Q ss_pred             cccEEEcCCCCCCCCCh-hhhcCCCCcEEEcCC
Q 039528          101 QLKELGLANCSLNVVPT-FLLHQYDLKYLDLSH  132 (136)
Q Consensus       101 ~L~~l~l~~n~~~~~~~-~~~~~~~L~~l~l~~  132 (136)
                      .++.+.+..+ +..++. .+..+ +++.+.+..
T Consensus        82 ~l~~i~~~~~-~~~i~~~~f~~~-~l~~i~~~~  112 (129)
T PF13306_consen   82 NLKNIDIPSN-ITEIGSSSFSNC-NLKEINIPS  112 (129)
T ss_dssp             TECEEEETTT--BEEHTTTTTT--T--EEE-TT
T ss_pred             cccccccCcc-ccEEchhhhcCC-CceEEEECC
Confidence            9999998664 544443 55565 788887764

>PRK15386 type III secretion protein GogB; Provisional

Probab=96.96  E-value=0.0053  Score=42.37  Aligned_cols=98  Identities=18%  Similarity=0.133  Sum_probs=59.4

Q ss_pred             ccCCCcccEEEccCCccccccchhhhccCCCCEEEccCCcCcCCCChHhhhcCccceEEEeccc-eeeeccCCCCCcccc
Q 039528           25 LKYLSHLKVFDISQNQLSGSLSSTITSLTSLEYLDLSYNNFEGPCPLSLLAHHSKLEVLVLSST-ILVKTENFLPTFQLK  103 (136)
Q Consensus        25 ~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~~l~~l~l~~~-~~~~~~~~~~~~~L~  103 (136)
                      +..+.++..|++++|.++ .+|.   ...+|+.|.+.++.-...+|.. +  .++|+.|++.++ .+...     +..|+
T Consensus        48 ~~~~~~l~~L~Is~c~L~-sLP~---LP~sLtsL~Lsnc~nLtsLP~~-L--P~nLe~L~Ls~Cs~L~sL-----P~sLe  115 (426)
T PRK15386         48 IEEARASGRLYIKDCDIE-SLPV---LPNELTEITIENCNNLTTLPGS-I--PEGLEKLTVCHCPEISGL-----PESVR  115 (426)
T ss_pred             HHHhcCCCEEEeCCCCCc-ccCC---CCCCCcEEEccCCCCcccCCch-h--hhhhhheEccCccccccc-----ccccc
Confidence            445789999999999887 4552   2346999999875443355532 2  257888888876 33221     22566


Q ss_pred             EEEcCCCCC---CCCChhhhcC------------------CCCcEEEcCCCc
Q 039528          104 ELGLANCSL---NVVPTFLLHQ------------------YDLKYLDLSHNN  134 (136)
Q Consensus       104 ~l~l~~n~~---~~~~~~~~~~------------------~~L~~l~l~~n~  134 (136)
                      .|++.++..   ..+|..+..+                  .+|++|++++|.
T Consensus       116 ~L~L~~n~~~~L~~LPssLk~L~I~~~n~~~~~~lp~~LPsSLk~L~Is~c~  167 (426)
T PRK15386        116 SLEIKGSATDSIKNVPNGLTSLSINSYNPENQARIDNLISPSLKTLSLTGCS  167 (426)
T ss_pred             eEEeCCCCCcccccCcchHhheeccccccccccccccccCCcccEEEecCCC
Confidence            666655442   4555433222                  257777776654

>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=96.83  E-value=0.00069  Score=26.47  Aligned_cols=12  Identities=50%  Similarity=0.656  Sum_probs=6.1

Q ss_pred             ccEEEcCCCccc
Q 039528            7 LFELNLKGNNVE   18 (136)
Q Consensus         7 L~~l~l~~~~l~   18 (136)
                      |++|++++|.++
T Consensus         2 L~~Ldls~n~l~   13 (22)
T PF00560_consen    2 LEYLDLSGNNLT   13 (22)
T ss_dssp             ESEEEETSSEES
T ss_pred             ccEEECCCCcCE
Confidence            445555555554

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....

>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D

Probab=96.43  E-value=0.0025  Score=23.21  Aligned_cols=16  Identities=38%  Similarity=0.650  Sum_probs=7.0

Q ss_pred             cccEEEcCCCCCCCCC
Q 039528          101 QLKELGLANCSLNVVP  116 (136)
Q Consensus       101 ~L~~l~l~~n~~~~~~  116 (136)
                      +|+.|++++|+++++|
T Consensus         2 ~L~~L~l~~n~L~~lP   17 (17)
T PF13504_consen    2 NLRTLDLSNNRLTSLP   17 (17)
T ss_dssp             T-SEEEETSS--SSE-
T ss_pred             ccCEEECCCCCCCCCc
Confidence            4566666666655543

...

>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]

Probab=95.75  E-value=0.0024  Score=44.56  Aligned_cols=62  Identities=27%  Similarity=0.211  Sum_probs=27.9

Q ss_pred             ccCCCCEEEccCCc-CcCCCChHhhhcCccceEEEeccce-eeecc---CCCCCccccEEEcCCCCC
Q 039528           51 SLTSLEYLDLSYNN-FEGPCPLSLLAHHSKLEVLVLSSTI-LVKTE---NFLPTFQLKELGLANCSL  112 (136)
Q Consensus        51 ~~~~l~~l~l~~~~-~~~~~~~~~~~~~~~l~~l~l~~~~-~~~~~---~~~~~~~L~~l~l~~n~~  112 (136)
                      .+.+++.++++.+. ++...-......+++|+++.+..+. +.+.+   ....++.|++|+++.|..
T Consensus       241 ~~~~L~~l~l~~~~~isd~~l~~l~~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~  307 (482)
T KOG1947|consen  241 ICRKLKSLDLSGCGLVTDIGLSALASRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHG  307 (482)
T ss_pred             hcCCcCccchhhhhccCchhHHHHHhhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCcc
Confidence            34555666665555 3322111222235566666644443 23222   113334566666665554

>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A

Probab=95.21  E-value=0.004  Score=24.69  Aligned_cols=16  Identities=31%  Similarity=0.457  Sum_probs=7.0

Q ss_pred             CcccEEEcCCCccccc
Q 039528            5 KNLFELNLKGNNVEGH   20 (136)
Q Consensus         5 ~~L~~l~l~~~~l~~~   20 (136)
                      ++|+.|++++|.+++.
T Consensus         2 ~~L~~L~l~~n~i~~~   17 (24)
T PF13516_consen    2 PNLETLDLSNNQITDE   17 (24)
T ss_dssp             TT-SEEE-TSSBEHHH
T ss_pred             CCCCEEEccCCcCCHH
Confidence            4455555555555443

...

>smart00370 LRR Leucine-rich repeats, outliers

Probab=95.11  E-value=0.029  Score=22.56  Aligned_cols=21  Identities=33%  Similarity=0.439  Sum_probs=16.1

Q ss_pred             ccccEEEcCCCCCCCCChhhh
Q 039528          100 FQLKELGLANCSLNVVPTFLL  120 (136)
Q Consensus       100 ~~L~~l~l~~n~~~~~~~~~~  120 (136)
                      ..|++|++.+|.+..+|....
T Consensus         2 ~~L~~L~L~~N~l~~lp~~~f   22 (26)
T smart00370        2 PNLRELDLSNNQLSSLPPGAF   22 (26)
T ss_pred             CCCCEEECCCCcCCcCCHHHc
Confidence            467888999998888886443

>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily

Probab=95.11  E-value=0.029  Score=22.56  Aligned_cols=21  Identities=33%  Similarity=0.439  Sum_probs=16.1

Q ss_pred             ccccEEEcCCCCCCCCChhhh
Q 039528          100 FQLKELGLANCSLNVVPTFLL  120 (136)
Q Consensus       100 ~~L~~l~l~~n~~~~~~~~~~  120 (136)
                      ..|++|++.+|.+..+|....
T Consensus         2 ~~L~~L~L~~N~l~~lp~~~f   22 (26)
T smart00369        2 PNLRELDLSNNQLSSLPPGAF   22 (26)
T ss_pred             CCCCEEECCCCcCCcCCHHHc
Confidence            467888999998888886443

>KOG3864 consensus Uncharacterized conserved protein [Function unknown]

Probab=93.58  E-value=0.016  Score=36.15  Aligned_cols=81  Identities=20%  Similarity=0.162  Sum_probs=42.7

Q ss_pred             cccEEEccCCccccccchhhhccCCCCEEEccCCcCcCCCChHhh-hcCccceEEEecccee-eecc--CCCCCccccEE
Q 039528           30 HLKVFDISQNQLSGSLSSTITSLTSLEYLDLSYNNFEGPCPLSLL-AHHSKLEVLVLSSTIL-VKTE--NFLPTFQLKEL  105 (136)
Q Consensus        30 ~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~-~~~~~l~~l~l~~~~~-~~~~--~~~~~~~L~~l  105 (136)
                      .++.++.+++.|..+..+.+..+++++.+.+.++..-+.-..... ...++|+.|++++|.. ++.+  -....++|+.|
T Consensus       102 ~IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L  181 (221)
T KOG3864|consen  102 KIEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLRRL  181 (221)
T ss_pred             eEEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhhHHH
Confidence            456666666666655556666666666666666554322111111 1335677777776543 3332  11344456655


Q ss_pred             EcCCC
Q 039528          106 GLANC  110 (136)
Q Consensus       106 ~l~~n  110 (136)
                      .+++-
T Consensus       182 ~l~~l  186 (221)
T KOG3864|consen  182 HLYDL  186 (221)
T ss_pred             HhcCc
Confidence            55443

>KOG4341 consensus F-box protein containing LRR [General function prediction only]

Probab=93.52  E-value=0.03  Score=38.70  Aligned_cols=106  Identities=25%  Similarity=0.230  Sum_probs=49.1

Q ss_pred             CCCcccEEEccCCc-cccccchhh-hccCCCCEEEccCCcCcCCC-ChHhhhcCccceEEEeccce-eeecc------CC
Q 039528           27 YLSHLKVFDISQNQ-LSGSLSSTI-TSLTSLEYLDLSYNNFEGPC-PLSLLAHHSKLEVLVLSSTI-LVKTE------NF   96 (136)
Q Consensus        27 ~l~~L~~L~l~~~~-~~~~~~~~~-~~~~~l~~l~l~~~~~~~~~-~~~~~~~~~~l~~l~l~~~~-~~~~~------~~   96 (136)
                      ++++|+++.++.++ ++......+ .+++.|+.+++......... -.+...+++.++.+.++.+. +++.+      ..
T Consensus       318 ~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls~~C~~lr~lslshce~itD~gi~~l~~~~  397 (483)
T KOG4341|consen  318 HCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGTLASLSRNCPRLRVLSLSHCELITDEGIRHLSSSS  397 (483)
T ss_pred             CCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhhhHhhhccCCchhccCChhhhhhhhhhhhhhhhhcc
Confidence            35566666666553 222211111 23445555555444331111 11233455666666666532 23321      11


Q ss_pred             CCCccccEEEcCCCCC-C-CCChhhhcCCCCcEEEcCC
Q 039528           97 LPTFQLKELGLANCSL-N-VVPTFLLHQYDLKYLDLSH  132 (136)
Q Consensus        97 ~~~~~L~~l~l~~n~~-~-~~~~~~~~~~~L~~l~l~~  132 (136)
                      .....++.+.+++++. + ..-..+..+++|+.+++..
T Consensus       398 c~~~~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l~~  435 (483)
T KOG4341|consen  398 CSLEGLEVLELDNCPLITDATLEHLSICRNLERIELID  435 (483)
T ss_pred             ccccccceeeecCCCCchHHHHHHHhhCcccceeeeec
Confidence            3333566666666665 2 2223456666777666544

>KOG3864 consensus Uncharacterized conserved protein [Function unknown]

Probab=93.09  E-value=0.021  Score=35.66  Aligned_cols=75  Identities=21%  Similarity=0.184  Sum_probs=30.4

Q ss_pred             CCEEEccCCcCcCCCChHhhhcCccceEEEeccceeeecc----CCCCCccccEEEcCCCC-CCCCC-hhhhcCCCCcEE
Q 039528           55 LEYLDLSYNNFEGPCPLSLLAHHSKLEVLVLSSTILVKTE----NFLPTFQLKELGLANCS-LNVVP-TFLLHQYDLKYL  128 (136)
Q Consensus        55 l~~l~l~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~----~~~~~~~L~~l~l~~n~-~~~~~-~~~~~~~~L~~l  128 (136)
                      ++.+|.++..+... ...-+..+++++.+.+..+.-.+..    .....++|+.|++++|. |++-. ..+.++++|+.|
T Consensus       103 IeaVDAsds~I~~e-Gle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L  181 (221)
T KOG3864|consen  103 IEAVDASDSSIMYE-GLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLRRL  181 (221)
T ss_pred             EEEEecCCchHHHH-HHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhhHHH
Confidence            44455554444311 1122444444555544443322211    01123355555555544 23322 234445555444


Q ss_pred             Ec
Q 039528          129 DL  130 (136)
Q Consensus       129 ~l  130 (136)
                      ++
T Consensus       182 ~l  183 (221)
T KOG3864|consen  182 HL  183 (221)
T ss_pred             Hh
Confidence            44

>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]

Probab=92.91  E-value=0.13  Score=36.05  Aligned_cols=87  Identities=25%  Similarity=0.182  Sum_probs=48.9

Q ss_pred             CCCcccEEEcCCC-cccccC----cccccCCCcccEEEccCCc-cccccchhhh-ccCCCCEEEccCCc-CcCCCChHhh
Q 039528            3 ELKNLFELNLKGN-NVEGHL----PNCLKYLSHLKVFDISQNQ-LSGSLSSTIT-SLTSLEYLDLSYNN-FEGPCPLSLL   74 (136)
Q Consensus         3 ~l~~L~~l~l~~~-~l~~~~----~~~~~~l~~L~~L~l~~~~-~~~~~~~~~~-~~~~l~~l~l~~~~-~~~~~~~~~~   74 (136)
                      .+++|+.++++.+ ......    ......+++|+.++++.+. ++...-..+. .+++|+.|.+.++. ++...-....
T Consensus       212 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~~~c~~L~~L~l~~c~~lt~~gl~~i~  291 (482)
T KOG1947|consen  212 KCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSALASRCPNLETLSLSNCSNLTDEGLVSIA  291 (482)
T ss_pred             hCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHHHhhCCCcceEccCCCCccchhHHHHHH
Confidence            3566777777652 111111    1233456777788877766 5543333333 26778888766665 4433333345


Q ss_pred             hcCccceEEEeccce
Q 039528           75 AHHSKLEVLVLSSTI   89 (136)
Q Consensus        75 ~~~~~l~~l~l~~~~   89 (136)
                      ..++.|++++++++.
T Consensus       292 ~~~~~L~~L~l~~c~  306 (482)
T KOG1947|consen  292 ERCPSLRELDLSGCH  306 (482)
T ss_pred             HhcCcccEEeeecCc
Confidence            566778888888743

>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type

Probab=91.92  E-value=0.18  Score=20.73  Aligned_cols=13  Identities=54%  Similarity=0.669  Sum_probs=8.3

Q ss_pred             CCCcEEEcCCCcC
Q 039528          123 YDLKYLDLSHNNL  135 (136)
Q Consensus       123 ~~L~~l~l~~n~l  135 (136)
                      ++|++|++++|.+
T Consensus         2 ~~L~~LdL~~N~i   14 (28)
T smart00368        2 PSLRELDLSNNKL   14 (28)
T ss_pred             CccCEEECCCCCC
Confidence            3566677776665

>smart00364 LRR_BAC Leucine-rich repeats, bacterial type

Probab=91.75  E-value=0.15  Score=20.70  Aligned_cols=18  Identities=39%  Similarity=0.547  Sum_probs=15.0

Q ss_pred             ccccEEEcCCCCCCCCCh
Q 039528          100 FQLKELGLANCSLNVVPT  117 (136)
Q Consensus       100 ~~L~~l~l~~n~~~~~~~  117 (136)
                      ..|+.|++++|+++++|+
T Consensus         2 ~~L~~L~vs~N~Lt~LPe   19 (26)
T smart00364        2 PSLKELNVSNNQLTSLPE   19 (26)
T ss_pred             cccceeecCCCccccCcc
Confidence            367889999999988886

>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily

Probab=89.99  E-value=0.38  Score=19.52  Aligned_cols=13  Identities=46%  Similarity=0.675  Sum_probs=7.6

Q ss_pred             CCCcEEEcCCCcC
Q 039528          123 YDLKYLDLSHNNL  135 (136)
Q Consensus       123 ~~L~~l~l~~n~l  135 (136)
                      .+|+.|+++.|.+
T Consensus         2 ~~L~~L~L~~NkI   14 (26)
T smart00365        2 TNLEELDLSQNKI   14 (26)
T ss_pred             CccCEEECCCCcc
Confidence            3456666666654

>KOG4308 consensus LRR-containing protein [Function unknown]

Probab=88.90  E-value=0.0024  Score=44.94  Aligned_cols=56  Identities=29%  Similarity=0.249  Sum_probs=31.9

Q ss_pred             ceEEEeccceeeecc------CCCCC-ccccEEEcCCCCCC-----CCChhhhcCCCCcEEEcCCCcC
Q 039528           80 LEVLVLSSTILVKTE------NFLPT-FQLKELGLANCSLN-----VVPTFLLHQYDLKYLDLSHNNL  135 (136)
Q Consensus        80 l~~l~l~~~~~~~~~------~~~~~-~~L~~l~l~~n~~~-----~~~~~~~~~~~L~~l~l~~n~l  135 (136)
                      +..+++..|.+.+..      .+..+ ..++.+++..|.++     .+...+.+++.++.+.+++|++
T Consensus       235 ~~el~l~~n~l~d~g~~~L~~~l~~~~~~l~~l~l~~nsi~~~~~~~L~~~l~~~~~l~~l~l~~n~l  302 (478)
T KOG4308|consen  235 LRELDLASNKLGDVGVEKLLPCLSVLSETLRVLDLSRNSITEKGVRDLAEVLVSCRQLEELSLSNNPL  302 (478)
T ss_pred             hHHHHHHhcCcchHHHHHHHHHhcccchhhhhhhhhcCCccccchHHHHHHHhhhHHHHHhhcccCcc
Confidence            444555555554442      11222 35677777777773     2344566666777777777765

>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]

Probab=87.88  E-value=0.44  Score=34.34  Aligned_cols=78  Identities=26%  Similarity=0.224  Sum_probs=44.1

Q ss_pred             ccCCCCEEEccCCcCcCCCC--hHhhhcCccceEEEeccc--eeeeccCC--CCCccccEEEcCCCCC-CCCC---hh--
Q 039528           51 SLTSLEYLDLSYNNFEGPCP--LSLLAHHSKLEVLVLSST--ILVKTENF--LPTFQLKELGLANCSL-NVVP---TF--  118 (136)
Q Consensus        51 ~~~~l~~l~l~~~~~~~~~~--~~~~~~~~~l~~l~l~~~--~~~~~~~~--~~~~~L~~l~l~~n~~-~~~~---~~--  118 (136)
                      +.+.+..+.+++|++. .+.  .......|++..|+|++|  .+......  .....|++|.+.+|++ +...   ..  
T Consensus       216 n~p~i~sl~lsnNrL~-~Ld~~sslsq~apklk~L~LS~N~~~~~~~~el~K~k~l~Leel~l~GNPlc~tf~~~s~yv~  294 (585)
T KOG3763|consen  216 NFPEILSLSLSNNRLY-HLDALSSLSQIAPKLKTLDLSHNHSKISSESELDKLKGLPLEELVLEGNPLCTTFSDRSEYVS  294 (585)
T ss_pred             CCcceeeeecccchhh-chhhhhHHHHhcchhheeecccchhhhcchhhhhhhcCCCHHHeeecCCccccchhhhHHHHH
Confidence            4566777778887774 221  123445678888888887  33333222  2233678888888887 3221   12  


Q ss_pred             --hhcCCCCcEEE
Q 039528          119 --LLHQYDLKYLD  129 (136)
Q Consensus       119 --~~~~~~L~~l~  129 (136)
                        ....|+|..||
T Consensus       295 ~i~~~FPKL~~LD  307 (585)
T KOG3763|consen  295 AIRELFPKLLRLD  307 (585)
T ss_pred             HHHHhcchheeec
Confidence              23556666655

>KOG4341 consensus F-box protein containing LRR [General function prediction only]

Probab=87.33  E-value=0.36  Score=33.69  Aligned_cols=110  Identities=20%  Similarity=0.134  Sum_probs=64.1

Q ss_pred             cCCCcccEEEccCCc-cccccchhh-hccCCCCEEEccCCcCcCCCChH-hhhcCccceEEEeccceeeecc----CCCC
Q 039528           26 KYLSHLKVFDISQNQ-LSGSLSSTI-TSLTSLEYLDLSYNNFEGPCPLS-LLAHHSKLEVLVLSSTILVKTE----NFLP   98 (136)
Q Consensus        26 ~~l~~L~~L~l~~~~-~~~~~~~~~-~~~~~l~~l~l~~~~~~~~~~~~-~~~~~~~l~~l~l~~~~~~~~~----~~~~   98 (136)
                      ..+..||.+..+++. ++......+ ....+|+++.+.+++--+..... .-.+++.|+.+++.........    ....
T Consensus       291 ~~c~~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls~~  370 (483)
T KOG4341|consen  291 CGCHALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGTLASLSRN  370 (483)
T ss_pred             hhhhHhhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhhhHhhhccC
Confidence            346778888877753 333222333 34678888888877632232222 2335677888888886543333    2244


Q ss_pred             CccccEEEcCCCCC-CCC-----ChhhhcCCCCcEEEcCCCcC
Q 039528           99 TFQLKELGLANCSL-NVV-----PTFLLHQYDLKYLDLSHNNL  135 (136)
Q Consensus        99 ~~~L~~l~l~~n~~-~~~-----~~~~~~~~~L~~l~l~~n~l  135 (136)
                      ++.++.+.++.|.. ++-     .....+...++.+.+++++.
T Consensus       371 C~~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~  413 (483)
T KOG4341|consen  371 CPRLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPL  413 (483)
T ss_pred             CchhccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCC
Confidence            55788888887765 332     11223455677777777654

>KOG0473 consensus Leucine-rich repeat protein [Function unknown]

Probab=87.13  E-value=0.0096  Score=38.11  Aligned_cols=57  Identities=23%  Similarity=0.247  Sum_probs=22.1

Q ss_pred             ccEEEcCCCcccccCcccccCCCcccEEEccCCccccccchhhhccCCCCEEEccCCcC
Q 039528            7 LFELNLKGNNVEGHLPNCLKYLSHLKVFDISQNQLSGSLSSTITSLTSLEYLDLSYNNF   65 (136)
Q Consensus         7 L~~l~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~   65 (136)
                      .+.||++.|.+- .....|+-+..+.-++++.|++. ..|..+.....+..++...|..
T Consensus        44 ~tvld~~s~r~v-n~~~n~s~~t~~~rl~~sknq~~-~~~~d~~q~~e~~~~~~~~n~~  100 (326)
T KOG0473|consen   44 VTVLDLSSNRLV-NLGKNFSILTRLVRLDLSKNQIK-FLPKDAKQQRETVNAASHKNNH  100 (326)
T ss_pred             eeeehhhhhHHH-hhccchHHHHHHHHHhccHhhHh-hChhhHHHHHHHHHHHhhccch
Confidence            334444444433 12222333344444444444443 3333333333333333333333

>KOG0473 consensus Leucine-rich repeat protein [Function unknown]

Probab=82.72  E-value=0.026  Score=36.25  Aligned_cols=46  Identities=33%  Similarity=0.426  Sum_probs=25.3

Q ss_pred             cccCCCcccEEEccCCccccccchhhhccCCCCEEEccCCcCcCCCCh
Q 039528           24 CLKYLSHLKVFDISQNQLSGSLSSTITSLTSLEYLDLSYNNFEGPCPL   71 (136)
Q Consensus        24 ~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~   71 (136)
                      .+....+.+.+|++.|+.- ..-..|+.+.++..++++.|.+. ..|.
T Consensus        37 ei~~~kr~tvld~~s~r~v-n~~~n~s~~t~~~rl~~sknq~~-~~~~   82 (326)
T KOG0473|consen   37 EIASFKRVTVLDLSSNRLV-NLGKNFSILTRLVRLDLSKNQIK-FLPK   82 (326)
T ss_pred             hhhccceeeeehhhhhHHH-hhccchHHHHHHHHHhccHhhHh-hChh
Confidence            3444555666666666543 33344555666666666666654 3443

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	136
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	1e-18
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	2e-18
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	8e-18
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	8e-18
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	1e-17
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	2e-15
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	3e-14
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	2e-13
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	2e-13
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	3e-13
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	8e-13
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	1e-16
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	3e-15
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	2e-13
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	9e-12
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	1e-10
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	3e-04
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	1e-14
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	3e-14
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	8e-14
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	6e-13
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	2e-12
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	3e-12
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	3e-11
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	1e-10
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	4e-10
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	5e-10
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	2e-09
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	5e-09
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	3e-07
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	2e-14
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	4e-14
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	2e-12
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	5e-12
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	6e-12
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	1e-10
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	9e-10
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	3e-08
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	4e-08
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	3e-07
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	4e-07
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	2e-06
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	1e-12
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	1e-12
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	3e-12
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	7e-11
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	2e-09
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	1e-08
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	8e-07
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	1e-06
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	4e-06
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	1e-12
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	5e-12
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	2e-11
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	2e-11
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	1e-10
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	7e-10
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	9e-10
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	6e-09
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	2e-06
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	4e-05
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	6e-12
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	8e-11
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	9e-09
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	1e-05
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	2e-05
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	2e-05
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	8e-12
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	1e-11
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	4e-10
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	7e-08
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	1e-07
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	8e-12
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	4e-10
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	3e-09
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	8e-08
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	4e-07
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	1e-05
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	8e-05
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	8e-04
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	1e-11
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	1e-11
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	1e-10
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	2e-09
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	4e-09
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	1e-06
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	1e-11
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	2e-10
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	8e-08
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	3e-06
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	3e-05
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	5e-05
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	1e-11
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	2e-11
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	2e-11
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	2e-10
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	6e-10
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	1e-09
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	2e-06
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	8e-06
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	5e-11
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	4e-10
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	2e-09
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	7e-09
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	2e-07
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	8e-11
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	1e-10
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	1e-09
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	4e-09
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	5e-07
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	2e-06
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	2e-05
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	1e-10
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	3e-08
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	5e-06
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	1e-10
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	2e-10
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	7e-09
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	3e-05
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	1e-10
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	2e-10
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	6e-10
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	3e-09
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	4e-09
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	7e-09
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	9e-09
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	4e-08
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	4e-07
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	3e-06
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	3e-05
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	2e-04
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	1e-10
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	6e-10
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	8e-10
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	3e-08
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	5e-08
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	3e-07
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	1e-06
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	2e-05
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	3e-04
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	9e-04
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	2e-10
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	2e-10
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	4e-10
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	5e-10
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	9e-10
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	3e-09
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	4e-08
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	3e-07
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	7e-04
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	3e-10
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	3e-10
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	9e-09
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	1e-04
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	4e-10
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	3e-09
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	5e-07
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	6e-10
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	2e-09
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	8e-04
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	1e-09
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	1e-08
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	2e-09
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	2e-08
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	4e-06
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	4e-05
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	7e-05
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	1e-04
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	3e-04
1o6v_A	466	Internalin A; bacterial infection, extracellular r	3e-09
1o6v_A	466	Internalin A; bacterial infection, extracellular r	5e-09
1o6v_A	466	Internalin A; bacterial infection, extracellular r	6e-09
1o6v_A	466	Internalin A; bacterial infection, extracellular r	8e-09
1o6v_A	466	Internalin A; bacterial infection, extracellular r	2e-08
1o6v_A	466	Internalin A; bacterial infection, extracellular r	4e-08
1o6v_A	466	Internalin A; bacterial infection, extracellular r	9e-08
1o6v_A	466	Internalin A; bacterial infection, extracellular r	1e-07
1o6v_A	466	Internalin A; bacterial infection, extracellular r	8e-06
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	4e-09
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	2e-04
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	1e-08
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	4e-08
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	1e-07
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	1e-04
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	1e-04
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	2e-04
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	2e-08
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	6e-08
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	1e-06
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	2e-06
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	7e-05
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	2e-08
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	7e-08
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	5e-07
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	1e-06
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	2e-05
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	1e-04
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	2e-08
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	2e-07
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	2e-07
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	3e-07
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	6e-06
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	4e-05
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	2e-08
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	3e-08
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	4e-08
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	2e-05
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	3e-08
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	2e-07
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	3e-04
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	3e-08
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	3e-04
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	4e-08
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	6e-05
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	5e-04
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	4e-08
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	1e-07
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	2e-06
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	2e-06
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	1e-07
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	1e-06
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	2e-07
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	2e-07
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	2e-06
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	9e-06
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	3e-07
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	8e-05
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	7e-07
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	8e-07
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	7e-05
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	5e-04
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	1e-06
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	1e-05
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	4e-05
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	2e-04
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	2e-06
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	2e-04
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	2e-06
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	3e-06
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	3e-06
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	2e-04
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	2e-04
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	1e-05
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	4e-04
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	1e-05
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	2e-04
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	4e-05
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	5e-05
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	9e-04
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	5e-05
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	2e-04
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	2e-04
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	3e-04
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	6e-05
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	8e-05
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	6e-04
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	1e-04
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	1e-04
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	3e-04
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	6e-04

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 79.6 bits (197), Expect = 1e-18
 Identities = 39/140 (27%), Positives = 61/140 (43%), Gaps = 8/140 (5%)

Query: 1   LCELKNLFELNLKGNNVEGHLPNCLKYLSHLKVFDISQNQLSGSLSSTITSLTSLEYLDL 60
           L     L  L+L  N + G +P+ L  LS L+   +  N L G +   +  + +LE L L
Sbjct: 414 LSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLIL 473

Query: 61  SYNNFEGPCPLSLLAHHSKLEVLVLSSTILVKTENFLPTF----QLKELGLANCSLN-VV 115
            +N+  G  P   L++ + L  + LS+  L  T            L  L L+N S +  +
Sbjct: 474 DFNDLTGEIPSG-LSNCTNLNWISLSNNRL--TGEIPKWIGRLENLAILKLSNNSFSGNI 530

Query: 116 PTFLLHQYDLKYLDLSHNNL 135
           P  L     L +LDL+ N  
Sbjct: 531 PAELGDCRSLIWLDLNTNLF 550

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 79.2 bits (196), Expect = 2e-18
 Identities = 45/142 (31%), Positives = 61/142 (42%), Gaps = 14/142 (9%)

Query: 1   LCELKNLFELNLKGNNVEGHLPNCLKYLSHLKVFDISQNQLSGSLSSTITSLTSLEYLDL 60
           +    NL  L++  NN    +P  L   S L+  DIS N+LSG  S  I++ T L+ L++
Sbjct: 196 VSRCVNLEFLDVSSNNFSTGIP-FLGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNI 254

Query: 61  SYNNFEGPCPLSLLAHHSKLEVLVLSSTILVKTENFLPTF------QLKELGLANCSLN- 113
           S N F GP P   L     L+ L L+          +P F       L  L L+      
Sbjct: 255 SSNQFVGPIPPLPL---KSLQYLSLAENKF---TGEIPDFLSGACDTLTGLDLSGNHFYG 308

Query: 114 VVPTFLLHQYDLKYLDLSHNNL 135
            VP F      L+ L LS NN 
Sbjct: 309 AVPPFFGSCSLLESLALSSNNF 330

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 77.3 bits (191), Expect = 8e-18
 Identities = 27/135 (20%), Positives = 52/135 (38%)

Query: 1   LCELKNLFELNLKGNNVEGHLPNCLKYLSHLKVFDISQNQLSGSLSSTITSLTSLEYLDL 60
           L    NL  ++L  N + G +P  +  L +L +  +S N  SG++ + +    SL +LDL
Sbjct: 486 LSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDL 545

Query: 61  SYNNFEGPCPLSLLAHHSKLEVLVLSSTILVKTENFLPTFQLKELGLANCSLNVVPTFLL 120
           + N F G  P ++     K+    ++    V  +N     +    G       +    L 
Sbjct: 546 NTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLN 605

Query: 121 HQYDLKYLDLSHNNL 135
                   +++    
Sbjct: 606 RLSTRNPCNITSRVY 620

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 77.3 bits (191), Expect = 8e-18
 Identities = 39/139 (28%), Positives = 59/139 (42%), Gaps = 7/139 (5%)

Query: 4   LKNLFELNLKGNNVEGHLPNCLKY-LSHLKVFDISQNQLSGSLSSTITSLTSLEYLDLSY 62
           LK+L  L+L  N   G +P+ L      L   D+S N   G++     S + LE L LS 
Sbjct: 268 LKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSS 327

Query: 63  NNFEGPCPLSLLAHHSKLEVLVLSSTIL---VKTENFLPTFQLKELGLANCSLN-VVPTF 118
           NNF G  P+  L     L+VL LS       +       +  L  L L++ + +  +   
Sbjct: 328 NNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPN 387

Query: 119 L--LHQYDLKYLDLSHNNL 135
           L    +  L+ L L +N  
Sbjct: 388 LCQNPKNTLQELYLQNNGF 406

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 77.3 bits (191), Expect = 1e-17
 Identities = 38/143 (26%), Positives = 68/143 (47%), Gaps = 11/143 (7%)

Query: 1   LCELKNLFELNLKGNNVEGHLPNCLKYLSHLKVFDISQNQLSGSLSS--TITSLTSLEYL 58
           L  L  L  L L  +++ G +    K  + L   D+S+N LSG +++  ++ S + L++L
Sbjct: 73  LLSLTGLESLFLSNSHINGSVSG-FKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFL 131

Query: 59  DLSYNNFEGPCPLSLLAHHSKLEVLVLSS-----TILVKTENFLPTFQLKELGLANCSLN 113
           ++S N  + P  +S     + LEVL LS+       +V         +LK L ++   ++
Sbjct: 132 NVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKIS 191

Query: 114 -VVPTFLLHQYDLKYLDLSHNNL 135
             V         L++LD+S NN 
Sbjct: 192 GDVDVSRCVN--LEFLDVSSNNF 212

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 70.3 bits (173), Expect = 2e-15
 Identities = 37/137 (27%), Positives = 59/137 (43%), Gaps = 10/137 (7%)

Query: 6   NLFELNLKGNNVEGHLPN--CLKYLSHLKVFDISQNQLSGSLSSTITSLTSLEYLDLSYN 63
           +L  L+L  NN  G +    C    + L+   +  N  +G +  T+++ + L  L LS+N
Sbjct: 369 SLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFN 428

Query: 64  NFEGPCPLSLLAHHSKLEVLVLSSTILVKTENFLPTF----QLKELGLANCSLN-VVPTF 118
              G  P S L   SKL  L L   +L               L+ L L    L   +P+ 
Sbjct: 429 YLSGTIPSS-LGSLSKLRDLKLWLNML--EGEIPQELMYVKTLETLILDFNDLTGEIPSG 485

Query: 119 LLHQYDLKYLDLSHNNL 135
           L +  +L ++ LS+N L
Sbjct: 486 LSNCTNLNWISLSNNRL 502

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 67.2 bits (165), Expect = 3e-14
 Identities = 49/143 (34%), Positives = 68/143 (47%), Gaps = 10/143 (6%)

Query: 1   LCELKNLFELNLKGNNVEGHLP-NCLKYLSHLKVFDISQNQLSGSLSSTITSLT-SLEYL 58
                 L  L L  NN  G LP + L  +  LKV D+S N+ SG L  ++T+L+ SL  L
Sbjct: 314 FGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTL 373

Query: 59  DLSYNNFEGPCPLSLLAHH-SKLEVLVLSSTILVKTENFLPTF----QLKELGLANCSLN 113
           DLS NNF GP   +L  +  + L+ L L +     T    PT     +L  L L+   L+
Sbjct: 374 DLSSNNFSGPILPNLCQNPKNTLQELYLQNNGF--TGKIPPTLSNCSELVSLHLSFNYLS 431

Query: 114 -VVPTFLLHQYDLKYLDLSHNNL 135
             +P+ L     L+ L L  N L
Sbjct: 432 GTIPSSLGSLSKLRDLKLWLNML 454

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 64.9 bits (159), Expect = 2e-13
 Identities = 44/148 (29%), Positives = 67/148 (45%), Gaps = 21/148 (14%)

Query: 1   LCELKNLFELNLKGNNVEGHLPNCLKYLS-HLKVFDISQNQLSGSLSSTI--TSLTSLEY 57
           L +++ L  L+L  N   G LP  L  LS  L   D+S N  SG +   +      +L+ 
Sbjct: 339 LLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQE 398

Query: 58  LDLSYNNFEGPCPLSLLAHHSKLEVLVLSSTILVKTENFL----PTF-----QLKELGLA 108
           L L  N F G  P + L++ S+L  L LS        N+L    P+      +L++L L 
Sbjct: 399 LYLQNNGFTGKIPPT-LSNCSELVSLHLSF-------NYLSGTIPSSLGSLSKLRDLKLW 450

Query: 109 NCSLN-VVPTFLLHQYDLKYLDLSHNNL 135
              L   +P  L++   L+ L L  N+L
Sbjct: 451 LNMLEGEIPQELMYVKTLETLILDFNDL 478

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 64.9 bits (159), Expect = 2e-13
 Identities = 33/135 (24%), Positives = 47/135 (34%), Gaps = 22/135 (16%)

Query: 1   LCELKNLFELNLKGNNVEGHLPNCLKYLSHLKVFDISQNQLSGSLSSTITSLTSLEYLDL 60
           L  L      N+      GH          +   D+S N LSG +   I S+  L  L+L
Sbjct: 604 LNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNL 663

Query: 61  SYNNFEGPCPLSLLAHHSKLEVLVLSSTILVKTENFLPTFQLKELGLANCSLNVVPTFLL 120
            +N+  G  P   +     L +L LSS                     N     +P  + 
Sbjct: 664 GHNDISGSIPDE-VGDLRGLNILDLSS---------------------NKLDGRIPQAMS 701

Query: 121 HQYDLKYLDLSHNNL 135
               L  +DLS+NNL
Sbjct: 702 ALTMLTEIDLSNNNL 716

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 64.2 bits (157), Expect = 3e-13
 Identities = 35/145 (24%), Positives = 59/145 (40%), Gaps = 12/145 (8%)

Query: 2   CELKNLFELNLKGNNVE---GHLPNCLKYLSHLKVFDISQNQLSGSLSSTITSLTSLEYL 58
           C    +  ++L    +      + + L  L+ L+   +S + ++GS+S       SL  L
Sbjct: 47  CRDDKVTSIDLSSKPLNVGFSAVSSSLLSLTGLESLFLSNSHINGSVSG-FKCSASLTSL 105

Query: 59  DLSYNNFEGPCPLSL-LAHHSKLEVLVLSS---TILVKTENFLPTFQLKELGLANCSLN- 113
           DLS N+  GP      L   S L+ L +SS       K    L    L+ L L+  S++ 
Sbjct: 106 DLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISG 165

Query: 114 VVPTFLLHQYD---LKYLDLSHNNL 135
                 +       LK+L +S N +
Sbjct: 166 ANVVGWVLSDGCGELKHLAISGNKI 190

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 63.0 bits (154), Expect = 8e-13
 Identities = 26/68 (38%), Positives = 40/68 (58%)

Query: 3   ELKNLFELNLKGNNVEGHLPNCLKYLSHLKVFDISQNQLSGSLSSTITSLTSLEYLDLSY 62
            +  LF LNL  N++ G +P+ +  L  L + D+S N+L G +   +++LT L  +DLS 
Sbjct: 654 SMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSN 713

Query: 63  NNFEGPCP 70
           NN  GP P
Sbjct: 714 NNLSGPIP 721

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score = 73.0 bits (180), Expect = 1e-16
 Identities = 33/137 (24%), Positives = 53/137 (38%), Gaps = 8/137 (5%)

Query: 4   LKNLFELNLKGNNVEGHLPNCLKYLSHLKVFDISQNQLSGSLSSTITSLTSLEYLDLSYN 63
           L  L  L +   NV G +P+ L  +  L   D S N LSG+L  +I+SL +L  +    N
Sbjct: 100 LTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGN 159

Query: 64  NFEGPCPLSLLAHHSKLEVLVLSSTILVKTENFLPT----FQLKELGLANCSLN-VVPTF 118
              G  P S  +       + +S   L      +P       L  + L+   L       
Sbjct: 160 RISGAIPDSYGSFSKLFTSMTISRNRLTGK---IPPTFANLNLAFVDLSRNMLEGDASVL 216

Query: 119 LLHQYDLKYLDLSHNNL 135
                + + + L+ N+L
Sbjct: 217 FGSDKNTQKIHLAKNSL 233

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score = 69.1 bits (170), Expect = 3e-15
 Identities = 31/140 (22%), Positives = 56/140 (40%), Gaps = 7/140 (5%)

Query: 1   LCELKNLFELNL-KGNNVEGHLPNCLKYLSHLKVFDISQNQLSGSLSSTITSLTSLEYLD 59
           L  L  L  L +   NN+ G +P  +  L+ L    I+   +SG++   ++ + +L  LD
Sbjct: 72  LANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLD 131

Query: 60  LSYNNFEGPCPLSLLAHHSKLEVLVLSSTILVKT---ENFLPTFQLKELGLANCSLN-VV 115
            SYN   G  P S ++    L  +      +           +     + ++   L   +
Sbjct: 132 FSYNALSGTLPPS-ISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKI 190

Query: 116 PTFLLHQYDLKYLDLSHNNL 135
           P       +L ++DLS N L
Sbjct: 191 PPT-FANLNLAFVDLSRNML 209

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score = 64.1 bits (157), Expect = 2e-13
 Identities = 19/70 (27%), Positives = 34/70 (48%), Gaps = 1/70 (1%)

Query: 1   LCELKNLFELNLKGNNVEGHLPNCLKYLSHLKVFDISQNQLSGSLSSTITSLTSLEYLDL 60
               KN  +++L  N++   L   +    +L   D+  N++ G+L   +T L  L  L++
Sbjct: 217 FGSDKNTQKIHLAKNSLAFDLGK-VGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNV 275

Query: 61  SYNNFEGPCP 70
           S+NN  G  P
Sbjct: 276 SFNNLCGEIP 285

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score = 59.9 bits (146), Expect = 9e-12
 Identities = 30/137 (21%), Positives = 47/137 (34%), Gaps = 27/137 (19%)

Query: 1   LCELKNLFE-LNLKGNNVEGHLPNCLKYLSHLKVFDISQNQLSGSLSSTITSLTSLEYLD 59
                 LF  + +  N + G +P     L+ L   D+S+N L G  S    S  + + + 
Sbjct: 169 YGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRNMLEGDASVLFGSDKNTQKIH 227

Query: 60  LSYNNFEGPCP-LSLLAHHSKLEVLVLSSTILVKTENFLPTFQLKELGLANCSLNVVPTF 118
           L+ N+       + L      L  L L +  +  T   LP        L           
Sbjct: 228 LAKNSLAFDLGKVGLS---KNLNGLDLRNNRIYGT---LPQG------LTQLKF------ 269

Query: 119 LLHQYDLKYLDLSHNNL 135
                 L  L++S NNL
Sbjct: 270 ------LHSLNVSFNNL 280

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score = 56.8 bits (138), Expect = 1e-10
 Identities = 33/146 (22%), Positives = 51/146 (34%), Gaps = 22/146 (15%)

Query: 4   LKNLFELNLKGNNVEG--HLPNCLKYLSHLKVFDIS-QNQLSGSLSSTITSLTSLEYLDL 60
              +  L+L G N+     +P+ L  L +L    I   N L G +   I  LT L YL +
Sbjct: 49  TYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYI 108

Query: 61  SYNNFEGPCPLSLLAHHSKLEVLVLSSTILVKTENFL-----PTF----QLKELGLANCS 111
           ++ N  G  P   L+    L  L  S        N L     P+      L  +      
Sbjct: 109 THTNVSGAIPDF-LSQIKTLVTLDFSY-------NALSGTLPPSISSLPNLVGITFDGNR 160

Query: 112 LN-VVPTFLLH-QYDLKYLDLSHNNL 135
           ++  +P            + +S N L
Sbjct: 161 ISGAIPDSYGSFSKLFTSMTISRNRL 186

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score = 38.3 bits (90), Expect = 3e-04
 Identities = 31/112 (27%), Positives = 42/112 (37%), Gaps = 17/112 (15%)

Query: 35  DISQNQLSGSLSSTITSLTSLEYLDLSYNNFEGPCPLSL-LAHHSKLEVLVLSSTILVKT 93
           D       G L  T T    +  LDLS  N   P P+   LA+   L  L +        
Sbjct: 32  DCCNRTWLGVLCDTDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGI----- 86

Query: 94  ENFL-----PTF----QLKELGLANCSLN-VVPTFLLHQYDLKYLDLSHNNL 135
            N L     P      QL  L + + +++  +P FL     L  LD S+N L
Sbjct: 87  -NNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNAL 137

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 68.1 bits (167), Expect = 1e-14
 Identities = 28/140 (20%), Positives = 51/140 (36%), Gaps = 6/140 (4%)

Query: 1   LCELKNLFELNLKGNNVEGHLPNCLKYLSHLKVFDISQNQLSGSLSSTITSLTSLEYLDL 60
             +L  L  LNL+ N +         + ++L    +  N +    ++      +L  LDL
Sbjct: 69  CQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDL 128

Query: 61  SYNNFEGPCPLSLLAHHSKLEVLVLS----STILVKTENFLPTFQLKELGLANCSLNVVP 116
           S+N       L        L+ L+LS      +  +  +      LK+L L++  +    
Sbjct: 129 SHNGLSST-KLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKEFS 187

Query: 117 TFLLHQ-YDLKYLDLSHNNL 135
               H    L  L L++  L
Sbjct: 188 PGCFHAIGRLFGLFLNNVQL 207

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 66.9 bits (164), Expect = 3e-14
 Identities = 34/137 (24%), Positives = 54/137 (39%), Gaps = 6/137 (4%)

Query: 4   LKNLFELNLKGNNVEGHLPNCLKYLSHLKVFDISQNQLSGSLSSTITSLTSLEYLDLSYN 63
              L  L++  N +    P   + L  LKV ++  N+LS     T    T+L  L L  N
Sbjct: 48  YSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSN 107

Query: 64  NFEGPCPLSLLAHHSKLEVLVLSSTIL--VKTENFLPTFQLKELGLANCSLNVVPT---F 118
           + +     +       L  L LS   L   K    +    L+EL L+N  +  + +    
Sbjct: 108 SIQKI-KNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELD 166

Query: 119 LLHQYDLKYLDLSHNNL 135
           +     LK L+LS N +
Sbjct: 167 IFANSSLKKLELSSNQI 183

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 65.8 bits (161), Expect = 8e-14
 Identities = 38/147 (25%), Positives = 63/147 (42%), Gaps = 12/147 (8%)

Query: 1   LCELKNLFELNLKGNNVEG--HLPNCLKYLSHLKVFDISQNQLSGSLSSTITSLTSLEYL 58
              + +L  L L+   ++     P+  + L +L + D+S N ++      +  L  LE L
Sbjct: 450 FALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEIL 509

Query: 59  DLSYNNFE-------GPCPLSLLAHHSKLEVLVLSSTIL--VKTENFLPTFQLKELGLAN 109
           DL +NN            P+  L   S L +L L S     +  E F   F+LK + L  
Sbjct: 510 DLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGL 569

Query: 110 CSLNVV-PTFLLHQYDLKYLDLSHNNL 135
            +LN +  +   +Q  LK L+L  N +
Sbjct: 570 NNLNTLPASVFNNQVSLKSLNLQKNLI 596

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 63.5 bits (155), Expect = 6e-13
 Identities = 33/135 (24%), Positives = 51/135 (37%), Gaps = 4/135 (2%)

Query: 4   LKNLFELNLKGNNVEGHLPNCLKYLSHLKVFDISQNQLSGSLSSTITSLTSLEYLDLSYN 63
             N+  LNL  N +           S L   D+  N +S         L  L+ L+L +N
Sbjct: 24  PTNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHN 83

Query: 64  NFEGPCPLSLLAHHSKLEVLVLSSTILVKTEN--FLPTFQLKELGLANCSLNVVPTFLLH 121
                      A  + L  L L S  + K +N  F+    L  L L++  L+        
Sbjct: 84  ELSQL-SDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQV 142

Query: 122 Q-YDLKYLDLSHNNL 135
           Q  +L+ L LS+N +
Sbjct: 143 QLENLQELLLSNNKI 157

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 61.9 bits (151), Expect = 2e-12
 Identities = 38/144 (26%), Positives = 56/144 (38%), Gaps = 9/144 (6%)

Query: 1   LCELKNLFELNLKGNNVEGHLPNCLKYL--SHLKVFDISQNQLSGSLSSTITSLTSLEYL 58
             +L+NL EL L  N ++      L     S LK  ++S NQ+         ++  L  L
Sbjct: 141 QVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGL 200

Query: 59  DLSYNNFEGPCP--LSLLAHHSKLEVLVLS----STILVKTENFLPTFQLKELGLANCSL 112
            L+           L L   ++ +  L LS    ST    T   L    L  L L+  +L
Sbjct: 201 FLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNL 260

Query: 113 NVVPTFLLHQ-YDLKYLDLSHNNL 135
           NVV          L+Y  L +NN+
Sbjct: 261 NVVGNDSFAWLPQLEYFFLEYNNI 284

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 61.6 bits (150), Expect = 3e-12
 Identities = 28/148 (18%), Positives = 51/148 (34%), Gaps = 13/148 (8%)

Query: 1   LCELKNLFELNLKGNNVEGHLP-NCLKYLSHLKVFDISQNQLSGSLSSTITSLTSLEYLD 59
              L +L  L+L  N +   L     + L ++    +S N+      ++   + SL+ L 
Sbjct: 401 FSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLM 460

Query: 60  LSYNNFEG-PCPLSLLAHHSKLEVLVLSSTIL--VKTENFLPTFQLKELGLANCSL---- 112
           L     +      S       L +L LS+  +  +  +      +L+ L L + +L    
Sbjct: 461 LRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLW 520

Query: 113 -----NVVPTFLLHQYDLKYLDLSHNNL 135
                     FL     L  L+L  N  
Sbjct: 521 KHANPGGPIYFLKGLSHLHILNLESNGF 548

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 58.5 bits (142), Expect = 3e-11
 Identities = 38/168 (22%), Positives = 58/168 (34%), Gaps = 33/168 (19%)

Query: 1   LCELKNLFELNLKGNNVEGHLPNCLKYLSHLKVFDIS----------------------- 37
              LK L  LN++ N++ G   N    L +LK   +S                       
Sbjct: 325 FQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLH 384

Query: 38  -----QNQLSGSLSSTITSLTSLEYLDLSYNNFEGPCPLSLLAHHSKLEVLVLSSTILVK 92
                +N++S   S   + L  LE LDL  N                +  + LS    ++
Sbjct: 385 ILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQ 444

Query: 93  TEN--FLPTFQLKELGLANCSLNVV---PTFLLHQYDLKYLDLSHNNL 135
                F     L+ L L   +L  V   P+      +L  LDLS+NN+
Sbjct: 445 LTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNI 492

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 56.9 bits (138), Expect = 1e-10
 Identities = 27/138 (19%), Positives = 55/138 (39%), Gaps = 7/138 (5%)

Query: 5   KNLFELNLKGNNVEGHLPNCLKYLSHLKVFDISQNQLSGSLSSTITSLTSLEYLDLSYNN 64
           ++  + ++   ++        ++L  L+  ++  N + G  S+  T L +L+YL LS + 
Sbjct: 305 RSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSF 364

Query: 65  FE-GPCPLSLLAH--HSKLEVLVLSSTILVKTEN--FLPTFQLKELGLANCSLNVVPTFL 119
                          HS L +L L+   + K E+  F     L+ L L    +    T  
Sbjct: 365 TSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQ 424

Query: 120 LHQY--DLKYLDLSHNNL 135
             +   ++  + LS+N  
Sbjct: 425 EWRGLENIFEIYLSYNKY 442

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 55.0 bits (133), Expect = 4e-10
 Identities = 32/149 (21%), Positives = 58/149 (38%), Gaps = 15/149 (10%)

Query: 2   CELKNLFELNLKGNNVEGHLPNCLKYLSHLKVFDISQNQLSGSLSSTITSLTSLEYLDLS 61
            +  NL  L+L  NN+     +   +L  L+ F +  N +    S ++  L ++ YL+L 
Sbjct: 245 LKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLK 304

Query: 62  YNNFEGPC--------PLSLLAHHSKLEVLVLSSTIL--VKTENFLPTFQLKELGLANCS 111
            +  +                     LE L +    +  +K+  F     LK L L+N  
Sbjct: 305 RSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSF 364

Query: 112 LNVVP----TFL-LHQYDLKYLDLSHNNL 135
            ++      TF+ L    L  L+L+ N +
Sbjct: 365 TSLRTLTNETFVSLAHSPLHILNLTKNKI 393

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 55.0 bits (133), Expect = 5e-10
 Identities = 30/151 (19%), Positives = 59/151 (39%), Gaps = 17/151 (11%)

Query: 1   LCELKNLFELNLKGNNVEGHLPNCLKYLSHLKVFDISQNQLSGSLS---------STITS 51
              L  L    L+ NN++    + L  L +++  ++ ++    S+S          +   
Sbjct: 268 FAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQW 327

Query: 52  LTSLEYLDLSYNNFEGPCPLSLLAHHSKLEVLVLSS------TILVKTENFLPTFQLKEL 105
           L  LE+L++  N+  G    ++      L+ L LS+      T+  +T   L    L  L
Sbjct: 328 LKCLEHLNMEDNDIPGI-KSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHIL 386

Query: 106 GLANCSLNVVPTFLLHQY-DLKYLDLSHNNL 135
            L    ++ + +        L+ LDL  N +
Sbjct: 387 NLTKNKISKIESDAFSWLGHLEVLDLGLNEI 417

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 53.5 bits (129), Expect = 2e-09
 Identities = 21/83 (25%), Positives = 32/83 (38%)

Query: 4   LKNLFELNLKGNNVEGHLPNCLKYLSHLKVFDISQNQLSGSLSSTITSLTSLEYLDLSYN 63
           L +L  LNL+ N  +       K L  LK+ D+  N L+   +S   +  SL+ L+L  N
Sbjct: 535 LSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKN 594

Query: 64  NFEGPCPLSLLAHHSKLEVLVLS 86
                           L  L + 
Sbjct: 595 LITSVEKKVFGPAFRNLTELDMR 617

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 52.3 bits (126), Expect = 5e-09
 Identities = 34/143 (23%), Positives = 50/143 (34%), Gaps = 29/143 (20%)

Query: 1   LCELKNLFELNLKGNN--------VEGHLPNCLKYLSHLKVFDISQNQLSGSLSSTITSL 52
           L  L+ L  L+L+ NN          G     LK LSHL + ++  N            L
Sbjct: 500 LEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDL 559

Query: 53  TSLEYLDLSYNNFEGPCPLSLLAHHSKLEVLVLSSTILVKTENFLPTFQLKELGLANCSL 112
             L+ +DL  NN     P S+  +   L+ L L         N + + + K  G A  + 
Sbjct: 560 FELKIIDLGLNNLNTL-PASVFNNQVSLKSLNLQK-------NLITSVEKKVFGPAFRN- 610

Query: 113 NVVPTFLLHQYDLKYLDLSHNNL 135
                       L  LD+  N  
Sbjct: 611 ------------LTELDMRFNPF 621

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 46.9 bits (112), Expect = 3e-07
 Identities = 14/68 (20%), Positives = 28/68 (41%), Gaps = 1/68 (1%)

Query: 4   LKNLFELNLKGNNVEGHLPNCLKYLSHLKVFDISQNQLSGSLSSTI-TSLTSLEYLDLSY 62
           L  L  ++L  NN+     +       LK  ++ +N ++         +  +L  LD+ +
Sbjct: 559 LFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKVFGPAFRNLTELDMRF 618

Query: 63  NNFEGPCP 70
           N F+  C 
Sbjct: 619 NPFDCTCE 626

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 67.4 bits (165), Expect = 2e-14
 Identities = 29/141 (20%), Positives = 55/141 (39%), Gaps = 6/141 (4%)

Query: 1   LCELKNLFELNLKGNNVEGHLPNCLKYLSHLKVFDISQNQLSGSLSSTITSLTSLEYLDL 60
              L +L  L L GN ++         LS L+     +  L+   +  I  L +L+ L++
Sbjct: 72  YQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNV 131

Query: 61  SYNNFEGPCPLSLLAHHSKLEVLVLSSTIL--VKTENFLPTFQLK----ELGLANCSLNV 114
           ++N  +        ++ + LE L LSS  +  +   +     Q+      L L+   +N 
Sbjct: 132 AHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNF 191

Query: 115 VPTFLLHQYDLKYLDLSHNNL 135
           +      +  L  L L +N  
Sbjct: 192 IQPGAFKEIRLHKLTLRNNFD 212

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 67.0 bits (164), Expect = 4e-14
 Identities = 29/139 (20%), Positives = 55/139 (39%), Gaps = 4/139 (2%)

Query: 1   LCELKNLFELNLKGNNVEGHLP-NCLKYLSHLKVFDISQNQLSGSLSSTITSLTSLEYLD 59
              L+ L  L+ + +N++     +    L +L   DIS      + +     L+SLE L 
Sbjct: 392 FLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLK 451

Query: 60  LSYNNFEGPCPLSLLAHHSKLEVLVLSSTIL--VKTENFLPTFQLKELGLANCSLNVV-P 116
           ++ N+F+      +      L  L LS   L  +    F     L+ L +++ +   +  
Sbjct: 452 MAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDT 511

Query: 117 TFLLHQYDLKYLDLSHNNL 135
                   L+ LD S N++
Sbjct: 512 FPYKCLNSLQVLDYSLNHI 530

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 61.6 bits (150), Expect = 2e-12
 Identities = 29/140 (20%), Positives = 51/140 (36%), Gaps = 6/140 (4%)

Query: 1   LCELKNLFELNLKGNNVEGHLPNCLKYLSHLKVFDISQNQLSGSL-SSTITSLTSLEYLD 59
              L+NL  L++   +           LS L+V  ++ N    +      T L +L +LD
Sbjct: 417 FLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLD 476

Query: 60  LSYNNFEGPCPLSLLAHHSKLEVLVLSSTILVKTEN--FLPTFQLKELGLANCSLNVVP- 116
           LS    E   P +     S L+VL +S       +   +     L+ L  +   +     
Sbjct: 477 LSQCQLEQLSP-TAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKK 535

Query: 117 -TFLLHQYDLKYLDLSHNNL 135
                    L +L+L+ N+ 
Sbjct: 536 QELQHFPSSLAFLNLTQNDF 555

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 60.8 bits (148), Expect = 5e-12
 Identities = 38/141 (26%), Positives = 58/141 (41%), Gaps = 7/141 (4%)

Query: 1   LCELKNLFELNLKGN--NVEGHLPNCLKYLSHLKVFDISQNQLSGSLSSTITSLTSLEYL 58
             +L +L  L+L  N  + +G         + LK  D+S N +   +SS    L  LE+L
Sbjct: 343 EVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVIT-MSSNFLGLEQLEHL 401

Query: 59  DLSYNNFEGPCPLSLLAHHSKLEVLVLSSTILVKTEN--FLPTFQLKELGLANCSL--NV 114
           D  ++N +     S+      L  L +S T      N  F     L+ L +A  S   N 
Sbjct: 402 DFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENF 461

Query: 115 VPTFLLHQYDLKYLDLSHNNL 135
           +P       +L +LDLS   L
Sbjct: 462 LPDIFTELRNLTFLDLSQCQL 482

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 60.4 bits (147), Expect = 6e-12
 Identities = 34/134 (25%), Positives = 56/134 (41%), Gaps = 5/134 (3%)

Query: 6   NLFELNLKGNNVEGHLPNCLKYLSHLKVFDISQNQLSGSLSSTITSLTSLEYLDLSYNNF 65
           +   L+L  N +             L+V D+S+ ++         SL+ L  L L+ N  
Sbjct: 29  STKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPI 88

Query: 66  EGPCPLSLLAHHSKLEVLVLSSTILVKTEN--FLPTFQLKELGLANCSLNVV--PTFLLH 121
           +    L   +  S L+ LV   T L   EN        LKEL +A+  +     P +  +
Sbjct: 89  QSL-ALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSN 147

Query: 122 QYDLKYLDLSHNNL 135
             +L++LDLS N +
Sbjct: 148 LTNLEHLDLSSNKI 161

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 56.6 bits (137), Expect = 1e-10
 Identities = 27/143 (18%), Positives = 47/143 (32%), Gaps = 9/143 (6%)

Query: 1   LCELKNLFELNLKGNNVEGHLPNCLKYLSHLKVFDISQNQLSGSLSSTITSLTSLEYLDL 60
                 L  L+L    ++       + LSHL    ++ N +        + L+SL+ L  
Sbjct: 48  FFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVA 107

Query: 61  SYNNFEGPCPLSLLAHHSKLEVLVLSS---TILVKTENFLPTFQLKELGLANCSLNVVPT 117
              N         + H   L+ L ++          E F     L+ L L++  +  +  
Sbjct: 108 VETNLASL-ENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYC 166

Query: 118 FLLH-----QYDLKYLDLSHNNL 135
             L            LDLS N +
Sbjct: 167 TDLRVLHQMPLLNLSLDLSLNPM 189

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 54.3 bits (131), Expect = 9e-10
 Identities = 26/110 (23%), Positives = 42/110 (38%), Gaps = 4/110 (3%)

Query: 29  SHLKVFDISQNQLSGSLSSTITSLTSLEYLDLSYNNFEGPCPLSLLAHHSKLEVLVLSST 88
              K  D+S N L    S +  S   L+ LDLS    +           S L  L+L+  
Sbjct: 28  FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTI-EDGAYQSLSHLSTLILTGN 86

Query: 89  ILVKTEN--FLPTFQLKELGLANCSLN-VVPTFLLHQYDLKYLDLSHNNL 135
            +       F     L++L     +L  +    + H   LK L+++HN +
Sbjct: 87  PIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLI 136

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 49.6 bits (119), Expect = 3e-08
 Identities = 26/151 (17%), Positives = 47/151 (31%), Gaps = 17/151 (11%)

Query: 1   LCELKNLFELNLKGNNVEGHLPNCLKYLSHLKVF----DISQNQLSGSLSSTITSLTSLE 56
              L NL  L+L  N ++      L+ L  + +     D+S N ++         +  L 
Sbjct: 145 FSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEI-RLH 203

Query: 57  YLDLSYNNFEGPCPLSLLAHHSKLEVLVLSSTILVKTENF----------LPTFQLKELG 106
            L L  N        + +   + LEV  L         N           L    ++E  
Sbjct: 204 KLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFR 263

Query: 107 LA--NCSLNVVPTFLLHQYDLKYLDLSHNNL 135
           LA  +  L+ +        ++    L    +
Sbjct: 264 LAYLDYYLDDIIDLFNCLTNVSSFSLVSVTI 294

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 49.6 bits (119), Expect = 4e-08
 Identities = 21/74 (28%), Positives = 32/74 (43%), Gaps = 1/74 (1%)

Query: 4   LKNLFELNLKGNNVEGHLPNCLKYLSHLKVFDISQNQLSGSLSSTITSL-TSLEYLDLSY 62
           L +L  LN+  NN         K L+ L+V D S N +  S    +    +SL +L+L+ 
Sbjct: 493 LSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQ 552

Query: 63  NNFEGPCPLSLLAH 76
           N+F   C       
Sbjct: 553 NDFACTCEHQSFLQ 566

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 46.9 bits (112), Expect = 3e-07
 Identities = 30/139 (21%), Positives = 55/139 (39%), Gaps = 11/139 (7%)

Query: 6   NLFELNLKGNNVEGHLP-NCLKYLSHLKVFDISQNQLSGSLS------STITSLTSL--E 56
            L +L L+ N    ++   C++ L+ L+V  +   +     +      S +  L +L  E
Sbjct: 201 RLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIE 260

Query: 57  YLDLSYNNFEGPCPLSLLAHHSKLEVLVLSSTILVKTENFLPTFQLKELGLANCSLNVVP 116
              L+Y ++     + L    + +    L S  + + ++F   F  + L L NC     P
Sbjct: 261 EFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQFP 320

Query: 117 TFLLHQYDLKYLDLSHNNL 135
           T  L    LK L  + N  
Sbjct: 321 TLKLKS--LKRLTFTSNKG 337

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 46.6 bits (111), Expect = 4e-07
 Identities = 38/140 (27%), Positives = 56/140 (40%), Gaps = 11/140 (7%)

Query: 1   LCELKNLFELNLKGNNVEGHLPNCLKYLSHLKVFDISQNQLSGSLSSTITSLTSLEYLDL 60
                    L L            LK L  L           G  + +   L SLE+LDL
Sbjct: 300 FSYNFGWQHLELVNCKFGQFPTLKLKSLKRLTF-----TSNKGGNAFSEVDLPSLEFLDL 354

Query: 61  SYN--NFEGPCPLSLLAHHSKLEVLVLSSTILVK-TENFLPTFQLKELGLANCSLNVV-- 115
           S N  +F+G C  S     + L+ L LS   ++  + NFL   QL+ L   + +L  +  
Sbjct: 355 SRNGLSFKGCCSQSDF-GTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSE 413

Query: 116 PTFLLHQYDLKYLDLSHNNL 135
            +  L   +L YLD+SH + 
Sbjct: 414 FSVFLSLRNLIYLDISHTHT 433

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 44.6 bits (106), Expect = 2e-06
 Identities = 25/138 (18%), Positives = 45/138 (32%), Gaps = 9/138 (6%)

Query: 1   LCELKNLFELNLKGNNVEGHLPNCLKYLSHLKVFDISQNQLSGSLSSTITSLTSLEYLDL 60
           LC L          +     + +    L+++  F +    +        +     ++L+L
Sbjct: 254 LCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKD--FSYNFGWQHLEL 311

Query: 61  SYNNFEGPCPLSLLAHHSKLEVLVLSSTILVKTENFLPTFQLKELGLANCSLN---VVPT 117
               F     L L      L+ L  +S       + +    L+ L L+   L+       
Sbjct: 312 VNCKFGQFPTLKLK----SLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQ 367

Query: 118 FLLHQYDLKYLDLSHNNL 135
                  LKYLDLS N +
Sbjct: 368 SDFGTTSLKYLDLSFNGV 385

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 62.7 bits (153), Expect = 1e-12
 Identities = 29/138 (21%), Positives = 53/138 (38%), Gaps = 6/138 (4%)

Query: 4   LKNLFELNLKGNNVEGHLPNCLKYLSHLKVFDISQNQLSGSLSSTITSLTSLEYLDLSYN 63
           L +L  L L GN ++   P     L+ L+     + +L+   S  I  L +L+ L++++N
Sbjct: 79  LHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHN 138

Query: 64  NFEGPCPLSLLAHHSKLEVLVLS----STILVKTENFLP--TFQLKELGLANCSLNVVPT 117
                   +  ++ + L  + LS     TI V    FL         L ++   ++ +  
Sbjct: 139 FIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSLNPIDFIQD 198

Query: 118 FLLHQYDLKYLDLSHNNL 135
                  L  L L  N  
Sbjct: 199 QAFQGIKLHELTLRGNFN 216

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 62.7 bits (153), Expect = 1e-12
 Identities = 32/139 (23%), Positives = 58/139 (41%), Gaps = 4/139 (2%)

Query: 1   LCELKNLFELNLKGNNVEGHLP-NCLKYLSHLKVFDISQNQLSGSLSSTITSLTSLEYLD 59
              L+ L  L+ + + ++     +    L  L   DIS              LTSL  L 
Sbjct: 395 FMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLK 454

Query: 60  LSYNNFEGPCPLSLLAHHSKLEVLVLSSTILVKTEN--FLPTFQLKELGLANCSLNVVPT 117
           ++ N+F+     ++ A+ + L  L LS   L +     F    +L+ L +++ +L  + +
Sbjct: 455 MAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDS 514

Query: 118 FLLHQ-YDLKYLDLSHNNL 135
              +Q Y L  LD S N +
Sbjct: 515 SHYNQLYSLSTLDCSFNRI 533

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 61.2 bits (149), Expect = 3e-12
 Identities = 26/139 (18%), Positives = 56/139 (40%), Gaps = 5/139 (3%)

Query: 1   LCELKNLFELNLKGNNVEGHLPNCLKYLSHLKVFDISQNQLSGSL-SSTITSLTSLEYLD 59
              L+ L  L++   N +         L+ L    ++ N    +  S+   + T+L +LD
Sbjct: 420 FLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLD 479

Query: 60  LSYNNFEGPCPLSLLAHHSKLEVLVLSSTIL--VKTENFLPTFQLKELGLANCSLNVVPT 117
           LS    E      +     +L++L +S   L  + + ++   + L  L  +   +     
Sbjct: 480 LSKCQLEQISW-GVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIETSKG 538

Query: 118 FLLHQYD-LKYLDLSHNNL 135
            L H    L + +L++N++
Sbjct: 539 ILQHFPKSLAFFNLTNNSV 557

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 57.3 bits (139), Expect = 7e-11
 Identities = 27/134 (20%), Positives = 56/134 (41%), Gaps = 5/134 (3%)

Query: 6   NLFELNLKGNNVEGHLPNCLKYLSHLKVFDISQNQLSGSLSSTITSLTSLEYLDLSYNNF 65
           +   ++L  N ++          S L+  D+S+ ++          L  L  L L+ N  
Sbjct: 33  STKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPI 92

Query: 66  EGPCPLSLLAHHSKLEVLVLSSTIL--VKTENFLPTFQLKELGLANCSLNVV--PTFLLH 121
           +        +  + LE LV   T L  +++        LK+L +A+  ++    P +  +
Sbjct: 93  QSF-SPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSN 151

Query: 122 QYDLKYLDLSHNNL 135
             +L ++DLS+N +
Sbjct: 152 LTNLVHVDLSYNYI 165

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 53.5 bits (129), Expect = 2e-09
 Identities = 34/141 (24%), Positives = 53/141 (37%), Gaps = 7/141 (4%)

Query: 1   LCELKNLFELNLKGNNVEGHLPNCLKYL--SHLKVFDISQNQLSGSLSSTITSLTSLEYL 58
              L +L  L+L  N +          L  + L+  D+S N     +S+    L  L++L
Sbjct: 346 KVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAI-IMSANFMGLEELQHL 404

Query: 59  DLSYNNFEGPCPLSLLAHHSKLEVLVLSSTIL--VKTENFLPTFQLKELGLANCSL--NV 114
           D  ++  +     S      KL  L +S T         FL    L  L +A  S   N 
Sbjct: 405 DFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNT 464

Query: 115 VPTFLLHQYDLKYLDLSHNNL 135
           +     +  +L +LDLS   L
Sbjct: 465 LSNVFANTTNLTFLDLSKCQL 485

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 51.2 bits (123), Expect = 1e-08
 Identities = 27/110 (24%), Positives = 46/110 (41%), Gaps = 4/110 (3%)

Query: 29  SHLKVFDISQNQLSGSLSSTITSLTSLEYLDLSYNNFEGPCPLSLLAHHSKLEVLVLSST 88
           S  K  D+S N L    S + ++ + L++LDLS    E             L  L+L+  
Sbjct: 32  SSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETI-EDKAWHGLHHLSNLILTGN 90

Query: 89  IL--VKTENFLPTFQLKELGLANCSLNVVPTFLLHQ-YDLKYLDLSHNNL 135
            +      +F     L+ L      L  + +F + Q   LK L+++HN +
Sbjct: 91  PIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFI 140

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 45.8 bits (109), Expect = 8e-07
 Identities = 37/140 (26%), Positives = 60/140 (42%), Gaps = 11/140 (7%)

Query: 1   LCELKNLFELNLKGNNVEGHLPNCLKYLSHLKVFDISQNQLSGSLSSTITSLTSLEYLDL 60
           + +      L++    ++      L +L  L    ++ N+ S S      +L SL YLDL
Sbjct: 303 VPKHFKWQSLSIIRCQLKQFPTLDLPFLKSL---TLTMNKGSISFK--KVALPSLSYLDL 357

Query: 61  SYNNFE--GPCPLSLLAHHSKLEVLVLSS-TILVKTENFLPTFQLKELGLANCSLNVVP- 116
           S N     G C  S L   + L  L LS    ++ + NF+   +L+ L   + +L  V  
Sbjct: 358 SRNALSFSGCCSYSDLG-TNSLRHLDLSFNGAIIMSANFMGLEELQHLDFQHSTLKRVTE 416

Query: 117 -TFLLHQYDLKYLDLSHNNL 135
            +  L    L YLD+S+ N 
Sbjct: 417 FSAFLSLEKLLYLDISYTNT 436

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 45.0 bits (107), Expect = 1e-06
 Identities = 26/135 (19%), Positives = 48/135 (35%), Gaps = 7/135 (5%)

Query: 3   ELKNLFELNLKGNNVEGHLPNCLKYLSHLKV--FDISQNQLSGSLSSTITSLTSLEYLDL 60
             + +        N+E   P+ ++ L  + +  F ++              L ++  + L
Sbjct: 233 VHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVKFHCLANVSAMSL 292

Query: 61  SYNNFEGPCPLSLLAHHSKLEVLVLSSTILVKTENFLPTFQLKELGLANCSLNVVPTFLL 120
           +  + +    L  +  H K + L +    L K    L    LK L L     ++    + 
Sbjct: 293 AGVSIKY---LEDVPKHFKWQSLSIIRCQL-KQFPTLDLPFLKSLTLTMNKGSISFKKVA 348

Query: 121 HQYDLKYLDLSHNNL 135
               L YLDLS N L
Sbjct: 349 LP-SLSYLDLSRNAL 362

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 43.9 bits (104), Expect = 4e-06
 Identities = 24/150 (16%), Positives = 44/150 (29%), Gaps = 16/150 (10%)

Query: 1   LCELKNLFELNLKGNNVEGHLPNCLKYLSHLKVF----DISQNQLSGSLSSTITSLTSLE 56
              L NL  ++L  N ++    N L++L          D+S N +   +         L 
Sbjct: 149 FSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSLNPID-FIQDQAFQGIKLH 207

Query: 57  YLDLSYNNFEGPCPLSLLAHHSKLEVLVLSSTILVKTENF----------LPTFQLKELG 106
            L L  N        + L + + L V  L         N           L    + E  
Sbjct: 208 ELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFR 267

Query: 107 LA-NCSLNVVPTFLLHQYDLKYLDLSHNNL 135
           L      +          ++  + L+  ++
Sbjct: 268 LTYTNDFSDDIVKFHCLANVSAMSLAGVSI 297

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 62.3 bits (152), Expect = 1e-12
 Identities = 32/137 (23%), Positives = 50/137 (36%), Gaps = 6/137 (4%)

Query: 4   LKNLFELNLKGNNVEGHLPNCLKYLSHLKVFDISQNQLSGSLSSTITSLTSLEYLDLSYN 63
              L EL+L   ++   LP+ L  LS LK   +S N+       + ++  SL +L +  N
Sbjct: 277 FSGLQELDLTATHLS-ELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGN 335

Query: 64  NFEGPCPLSLLAHHSKLEVLVLS----STILVKTENFLPTFQLKELGLANCSLNVVPTFL 119
                     L +   L  L LS     T             L+ L L+      + T  
Sbjct: 336 TKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEA 395

Query: 120 LHQYD-LKYLDLSHNNL 135
             +   L+ LDL+   L
Sbjct: 396 FKECPQLELLDLAFTRL 412

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 60.8 bits (148), Expect = 5e-12
 Identities = 23/139 (16%), Positives = 37/139 (26%), Gaps = 5/139 (3%)

Query: 1   LCELKNLFELNLKGNNVEGHLPNCLKYLSHLKVFDISQNQLSGSLSSTITSLTSLEYLDL 60
                 L  L L  N +       L     LK     Q  +S      + +  +LE L L
Sbjct: 77  FQSQHRLDTLVLTANPLIFMAETALSGPKALKHLFFIQTGISSIDFIPLHNQKTLESLYL 136

Query: 61  SYNNFEGPCPLSLLAHHSKLEVLVLS----STILVKTENFLPTFQLKELGLANCSLNVVP 116
             N+      L       KL+VL         +  +  + L       L L    +  + 
Sbjct: 137 GSNHISSI-KLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDIAGIE 195

Query: 117 TFLLHQYDLKYLDLSHNNL 135
                    + L+      
Sbjct: 196 PGAFDSAVFQSLNFGGTQN 214

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 59.3 bits (144), Expect = 2e-11
 Identities = 28/140 (20%), Positives = 52/140 (37%), Gaps = 6/140 (4%)

Query: 1   LCELKNLFELNLKGNNVEGHLPNCLKYLSHLKVFDISQNQLSGSLSSTITSLTSLEYLDL 60
              L NL  L+L    +     +  +    L    ++ N L     + ++   +L++L  
Sbjct: 53  FSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLFF 112

Query: 61  SYNNFEGPCPLSLLAHHSKLEVLVLSSTIL--VKTENFLPTFQLKELGLANCSLNVVPTF 118
                        L +   LE L L S  +  +K     PT +LK L   N +++ +   
Sbjct: 113 IQTGISSI-DFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKE 171

Query: 119 L---LHQYDLKYLDLSHNNL 135
               L Q     L+L+ N++
Sbjct: 172 DMSSLQQATNLSLNLNGNDI 191

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 58.9 bits (143), Expect = 2e-11
 Identities = 35/140 (25%), Positives = 58/140 (41%), Gaps = 8/140 (5%)

Query: 4   LKNLFELNLKGNNVE--GHLPNCLKYLSHLKVFDISQNQLSGSLSSTITSLTSLEYLDLS 61
           L+NL EL+L  +++E        L+ LSHL+  ++S N+     +        LE LDL+
Sbjct: 349 LENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLA 408

Query: 62  YNNFEGPCPLSLLAHHSKLEVLVLSSTIL--VKTENFLPTFQLKELGLANCSLNVVPTFL 119
           +   +     S   +   L+VL LS ++L     + F     L+ L L            
Sbjct: 409 FTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQK 468

Query: 120 LHQYD----LKYLDLSHNNL 135
            +       L+ L LS  +L
Sbjct: 469 TNSLQTLGRLEILVLSFCDL 488

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 56.9 bits (138), Expect = 1e-10
 Identities = 43/141 (30%), Positives = 60/141 (42%), Gaps = 6/141 (4%)

Query: 1   LCELKNLFELNLKGNNVEGHLPNCLKYLSHLKVFDISQNQLSGSL-SSTITSLTSLEYLD 59
           L  L  L +L L  N  E            L    I  N     L +  + +L +L  LD
Sbjct: 297 LVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELD 356

Query: 60  LSYNNFEG-PCPLSLLAHHSKLEVLVLSSTIL--VKTENFLPTFQLKELGLANCSLNVV- 115
           LS+++ E   C    L + S L+ L LS      +KTE F    QL+ L LA   L V  
Sbjct: 357 LSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKD 416

Query: 116 -PTFLLHQYDLKYLDLSHNNL 135
             +   + + LK L+LSH+ L
Sbjct: 417 AQSPFQNLHLLKVLNLSHSLL 437

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 54.6 bits (132), Expect = 7e-10
 Identities = 26/140 (18%), Positives = 52/140 (37%), Gaps = 6/140 (4%)

Query: 1   LCELKNLFELNLKGNNVEGHLPNCLKYLSHLKVFDISQNQLSG---SLSSTITSLTSLEY 57
              L  L  LNL  + ++         L  L+  ++  N         ++++ +L  LE 
Sbjct: 421 FQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEI 480

Query: 58  LDLSYNNFEGPCPLSLLAHHSKLEVLVLSSTILVK-TENFLPTFQLKELGLANCSLNVV- 115
           L LS+ +               +  + LS   L   +   L   +   L LA+  ++++ 
Sbjct: 481 LVLSFCDLSSI-DQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGIYLNLASNHISIIL 539

Query: 116 PTFLLHQYDLKYLDLSHNNL 135
           P+ L      + ++L  N L
Sbjct: 540 PSLLPILSQQRTINLRQNPL 559

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 54.3 bits (131), Expect = 9e-10
 Identities = 24/135 (17%), Positives = 45/135 (33%), Gaps = 4/135 (2%)

Query: 4   LKNLFELNLKGNNVEGHLPNCLKYLSHLKVFDISQNQLSGSLSSTITSLTSLEYLDLSYN 63
             +   L    N +          L +L   D+++ Q+      T  S   L+ L L+ N
Sbjct: 32  PNSTECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTAN 91

Query: 64  NFEGPCPLSLLAHHSKLEVLVLSSTILVKTEN--FLPTFQLKELGLANCSLNVVPTFLLH 121
                   + L+    L+ L    T +   +         L+ L L +  ++ +      
Sbjct: 92  PLIFM-AETALSGPKALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGF 150

Query: 122 Q-YDLKYLDLSHNNL 135
               LK LD  +N +
Sbjct: 151 PTEKLKVLDFQNNAI 165

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 51.9 bits (125), Expect = 6e-09
 Identities = 27/140 (19%), Positives = 58/140 (41%), Gaps = 8/140 (5%)

Query: 2   CELKNLFELNLKGNNVEGHLPNCLKYLS--HLKVFDISQNQLSGSLSSTITSLTSLEYLD 59
             +++L+    +  + E   P   + L    ++  ++ ++      S+T    + L+ LD
Sbjct: 225 STIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFFNISSNTFHCFSGLQELD 284

Query: 60  LSYNNFEGPCPLSLLAHHSKLEVLVLSSTIL--VKTENFLPTFQLKELGLANCSL--NVV 115
           L+  +       S L   S L+ LVLS+     +   +      L  L +   +    + 
Sbjct: 285 LTATHLSE--LPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELG 342

Query: 116 PTFLLHQYDLKYLDLSHNNL 135
              L +  +L+ LDLSH+++
Sbjct: 343 TGCLENLENLRELDLSHDDI 362

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 44.6 bits (106), Expect = 2e-06
 Identities = 29/140 (20%), Positives = 50/140 (35%), Gaps = 7/140 (5%)

Query: 1   LCELKNLFELNLKGNNVEGHLPNCLKYLSHLKVFDISQNQLSGSLSSTI--TSLTSLEYL 58
           L +  NL  LNL GN++   +       +  +  +    Q    +   +  +++ SL   
Sbjct: 176 LQQATNL-SLNLNGNDIA-GIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLG 233

Query: 59  DLSYNNFEGPCPLSLLA-HHSKLEVLVLSSTILVKTEN--FLPTFQLKELGLANCSLNVV 115
                + E   P          +E + L         +  F     L+EL L    L+ +
Sbjct: 234 TFEDMDDEDISPAVFEGLCEMSVESINLQKHYFFNISSNTFHCFSGLQELDLTATHLSEL 293

Query: 116 PTFLLHQYDLKYLDLSHNNL 135
           P+ L+    LK L LS N  
Sbjct: 294 PSGLVGLSTLKKLVLSANKF 313

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 40.8 bits (96), Expect = 4e-05
 Identities = 14/73 (19%), Positives = 29/73 (39%), Gaps = 1/73 (1%)

Query: 4   LKNLFELNLKGNNVEGHLPNCLKYLSHLKVFDISQNQLSGSLSSTITSLTSLEYLDLSYN 63
           LK +  ++L  N +       L +L  +   +++ N +S  L S +  L+    ++L  N
Sbjct: 499 LKMMNHVDLSHNRLTSSSIEALSHLKGI-YLNLASNHISIILPSLLPILSQQRTINLRQN 557

Query: 64  NFEGPCPLSLLAH 76
             +  C       
Sbjct: 558 PLDCTCSNIYFLE 570

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 60.5 bits (147), Expect = 6e-12
 Identities = 34/135 (25%), Positives = 52/135 (38%), Gaps = 5/135 (3%)

Query: 4   LKNLFELNLKGNNVEGHLPNCLKYLSHLKVFDISQNQLSGSLSSTITSLTSLEYLDLSYN 63
           L++L  L L  N++          L++L   ++  N+L+   +     L+ L+ L L  N
Sbjct: 87  LRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWLRNN 146

Query: 64  NFEGPCPLSLLAHHSKLEVLVLSST---ILVKTENFLPTFQLKELGLANCSLNVVPTFLL 120
             E   P         L  L L        +    F     L+ L LA C+L  +P    
Sbjct: 147 PIESI-PSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLREIPNL-T 204

Query: 121 HQYDLKYLDLSHNNL 135
               L  LDLS N+L
Sbjct: 205 PLIKLDELDLSGNHL 219

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 57.1 bits (138), Expect = 8e-11
 Identities = 32/133 (24%), Positives = 46/133 (34%), Gaps = 1/133 (0%)

Query: 4   LKNLFELNLKGNNVEGHLPNCLKYLSHLKVFDISQNQLSGSLSSTITSLTSLEYLDLSYN 63
           L NL  L L  N +         YLS LK   +  N +    S     + SL  LDL   
Sbjct: 111 LANLNTLELFDNRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGEL 170

Query: 64  NFEGPCPLSLLAHHSKLEVLVLSSTILVKTENFLPTFQLKELGLANCSLNVVPTFLLHQY 123
                         S L  L L+   L +  N  P  +L EL L+   L+ +        
Sbjct: 171 KRLSYISEGAFEGLSNLRYLNLAMCNLREIPNLTPLIKLDELDLSGNHLSAIRPGSFQGL 230

Query: 124 D-LKYLDLSHNNL 135
             L+ L +  + +
Sbjct: 231 MHLQKLWMIQSQI 243

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 51.3 bits (123), Expect = 9e-09
 Identities = 33/131 (25%), Positives = 56/131 (42%), Gaps = 5/131 (3%)

Query: 9   ELNLKGNNVEGHLPNCLKYLSHLKVFDISQNQLSGSLSSTITSLTSLEYLDLSYNNFEGP 68
            LNL  N ++    N  K+L HL++  +S+N +          L +L  L+L  N     
Sbjct: 68  LLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTT- 126

Query: 69  CPLSLLAHHSKLEVLVLSSTIL--VKTENFLPTFQLKELGLANC-SLNVVPTFLLHQ-YD 124
            P     + SKL+ L L +  +  + +  F     L+ L L     L+ +         +
Sbjct: 127 IPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSN 186

Query: 125 LKYLDLSHNNL 135
           L+YL+L+  NL
Sbjct: 187 LRYLNLAMCNL 197

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 42.4 bits (100), Expect = 1e-05
 Identities = 24/84 (28%), Positives = 39/84 (46%), Gaps = 1/84 (1%)

Query: 4   LKNLFELNLKGNNVEGHLPNCLKYLSHLKVFDISQNQLSGSLSSTITSLTSLEYLDLSYN 63
           L  L EL+L GN++    P   + L HL+   + Q+Q+     +   +L SL  ++L++N
Sbjct: 206 LIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHN 265

Query: 64  NFEGPCPLSLLAHHSKLEVLVLSS 87
           N     P  L      LE + L  
Sbjct: 266 NLTL-LPHDLFTPLHHLERIHLHH 288

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 42.0 bits (99), Expect = 2e-05
 Identities = 25/109 (22%), Positives = 48/109 (44%), Gaps = 4/109 (3%)

Query: 29  SHLKVFDISQNQLSGSLSSTITSLTSLEYLDLSYNNFEGPCPLSLLAHHSKLEVLVLSST 88
           ++ ++ ++ +NQ+     ++   L  LE L LS N+      +      + L  L L   
Sbjct: 64  TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTI-EIGAFNGLANLNTLELFDN 122

Query: 89  IL--VKTENFLPTFQLKELGLANCSLNVVPTFLLHQ-YDLKYLDLSHNN 134
            L  +    F+   +LKEL L N  +  +P++  ++   L+ LDL    
Sbjct: 123 RLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELK 171

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 41.7 bits (98), Expect = 2e-05
 Identities = 32/134 (23%), Positives = 51/134 (38%), Gaps = 26/134 (19%)

Query: 4   LKNLFELNLKGNNVEGHLPNCLKYLSHLKVFDISQNQLSGSLSSTITSLTSLEYLDLSYN 63
           L NL  LNL   N+   +PN L  L  L   D+S N LS     +   L  L+ L +  +
Sbjct: 184 LSNLRYLNLAMCNLR-EIPN-LTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQS 241

Query: 64  NFEGPCPLSLLAHHSKLEVLVLSSTILVKTENFLPTFQLKELGLANCSLNVVPTFLLHQY 123
                  + ++  ++                 F     L E+ LA+ +L ++P  L    
Sbjct: 242 Q------IQVIERNA-----------------FDNLQSLVEINLAHNNLTLLPHDLFTPL 278

Query: 124 D-LKYLDLSHNNLV 136
             L+ + L HN   
Sbjct: 279 HHLERIHLHHNPWN 292

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 60.1 bits (145), Expect = 8e-12
 Identities = 29/135 (21%), Positives = 58/135 (42%), Gaps = 8/135 (5%)

Query: 1   LCELKNLFELNLKGNNVEGHLPNCLKYLSHLKVFDISQNQLSGSLSSTITSLTSLEYLDL 60
             EL ++ ++    ++++  +   ++YL ++    ++ N+L+      +T+L +L +L L
Sbjct: 39  QNELNSIDQIIANNSDIK-SVQG-IQYLPNVTKLFLNGNKLTDI--KPLTNLKNLGWLFL 94

Query: 61  SYNNFEGPCPLSLLAHHSKLEVLVLSSTILVKTENFLPTFQLKELGLANCSLNVVPTFLL 120
             N  +    L  L    KL+ L L    +      +   QL+ L L N  +  + T L 
Sbjct: 95  DENKIKDLSSLKDL---KKLKSLSLEHNGISDINGLVHLPQLESLYLGNNKITDI-TVLS 150

Query: 121 HQYDLKYLDLSHNNL 135
               L  L L  N +
Sbjct: 151 RLTKLDTLSLEDNQI 165

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 59.7 bits (144), Expect = 1e-11
 Identities = 25/135 (18%), Positives = 49/135 (36%), Gaps = 8/135 (5%)

Query: 1   LCELKNLFELNLKGNNVEGHLPNCLKYLSHLKVFDISQNQLSGSLSSTITSLTSLEYLDL 60
                   + NLK  +V          L+ +     + + +  S+   I  L ++  L L
Sbjct: 17  DDAFAETIKDNLKKKSVTD--AVTQNELNSIDQIIANNSDIK-SVQG-IQYLPNVTKLFL 72

Query: 61  SYNNFEGPCPLSLLAHHSKLEVLVLSSTILVKTENFLPTFQLKELGLANCSLNVVPTFLL 120
           + N       +  L +   L  L L    +    +     +LK L L +  ++ +   L+
Sbjct: 73  NGNKLTD---IKPLTNLKNLGWLFLDENKIKDLSSLKDLKKLKSLSLEHNGISDI-NGLV 128

Query: 121 HQYDLKYLDLSHNNL 135
           H   L+ L L +N +
Sbjct: 129 HLPQLESLYLGNNKI 143

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 55.1 bits (132), Expect = 4e-10
 Identities = 36/136 (26%), Positives = 56/136 (41%), Gaps = 8/136 (5%)

Query: 1   LCELKNLFELNLKGNNVEGHLPNCLKYLSHLKVFDISQNQLSGSLSSTITSLTSLEYLDL 60
           L  LKNL  L L  N ++  L + LK L  LK   +  N +S  ++  +  L  LE L L
Sbjct: 83  LTNLKNLGWLFLDENKIK-DLSS-LKDLKKLKSLSLEHNGIS-DING-LVHLPQLESLYL 138

Query: 61  SYNNFEGPCPLSLLAHHSKLEVLVLSSTILVKTENFLPTFQLKELGLANCSLNVVPTFLL 120
             N       LS L   +KL+ L L    +          +L+ L L+   ++ +   L 
Sbjct: 139 GNNKITDITVLSRL---TKLDTLSLEDNQISDIVPLAGLTKLQNLYLSKNHISDLR-ALA 194

Query: 121 HQYDLKYLDLSHNNLV 136
              +L  L+L     +
Sbjct: 195 GLKNLDVLELFSQECL 210

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 48.9 bits (116), Expect = 7e-08
 Identities = 29/136 (21%), Positives = 53/136 (38%), Gaps = 8/136 (5%)

Query: 1   LCELKNLFELNLKGNNVEGHLPNCLKYLSHLKVFDISQNQLSGSLSSTITSLTSLEYLDL 60
           L +LK L  L+L+ N +   +   L +L  L+   +  N+++    + ++ LT L+ L L
Sbjct: 105 LKDLKKLKSLSLEHNGIS-DING-LVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSL 160

Query: 61  SYNNFEGPCPLSLLAHHSKLEVLVLSSTILVKTENFLPTFQLKELGLANCSL-NVVPTFL 119
             N       +  LA  +KL+ L LS   +           L  L L +    N      
Sbjct: 161 EDNQISD---IVPLAGLTKLQNLYLSKNHISDLRALAGLKNLDVLELFSQECLNKPINHQ 217

Query: 120 LHQYDLKYLDLSHNNL 135
            +      +  +  +L
Sbjct: 218 SNLVVPNTVKNTDGSL 233

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 48.6 bits (115), Expect = 1e-07
 Identities = 18/129 (13%), Positives = 45/129 (34%), Gaps = 8/129 (6%)

Query: 7   LFELNLKGNNVEGHLPNCLKYLSHLKVFDISQNQLSGSLSSTITSLTSLEYLDLSYNNFE 66
           + E       ++   P      +     ++ +  ++ +   T   L S++ +  + ++ +
Sbjct: 1   MGETITVSTPIKQIFP--DDAFAETIKDNLKKKSVTDA--VTQNELNSIDQIIANNSDIK 56

Query: 67  GPCPLSLLAHHSKLEVLVLSSTILVKTENFLPTFQLKELGLANCSLNVVPTFLLHQYDLK 126
               +  + +   +  L L+   L   +       L  L L    +  + + L     LK
Sbjct: 57  S---VQGIQYLPNVTKLFLNGNKLTDIKPLTNLKNLGWLFLDENKIKDL-SSLKDLKKLK 112

Query: 127 YLDLSHNNL 135
            L L HN +
Sbjct: 113 SLSLEHNGI 121

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 60.1 bits (146), Expect = 8e-12
 Identities = 29/139 (20%), Positives = 53/139 (38%), Gaps = 6/139 (4%)

Query: 3   ELKNLFELNLKGNNVEGHLPNCLKYLSHLKVFDISQNQLSGSLSSTITSLTSLEYLDLSY 62
           E   +  L++    +   L      L  +K   +  +++     S    L SLE+LDLS 
Sbjct: 284 ETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVFLVPCSFSQHLKSLEFLDLSE 343

Query: 63  NNF--EGPCPLSLLAHHSKLEVLVLS----STILVKTENFLPTFQLKELGLANCSLNVVP 116
           N    E     +       L+ LVLS     ++    E  L    L  L ++  + + +P
Sbjct: 344 NLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFHPMP 403

Query: 117 TFLLHQYDLKYLDLSHNNL 135
                   +++L+LS   +
Sbjct: 404 DSCQWPEKMRFLNLSSTGI 422

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 55.1 bits (133), Expect = 4e-10
 Identities = 31/140 (22%), Positives = 62/140 (44%), Gaps = 7/140 (5%)

Query: 1   LCELKNLFELNLKGNNVEGHLPNCLKYLSHLKVFDISQNQLSGSL---SSTITSLTSLEY 57
              L+ +  + ++ + V     +  ++L  L+  D+S+N +       S+   +  SL+ 
Sbjct: 306 YSLLEKVKRITVENSKVFLVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQT 365

Query: 58  LDLSYNNFEG-PCPLSLLAHHSKLEVLVLSS-TILVKTENFLPTFQLKELGLANCSLNVV 115
           L LS N+         +L     L  L +S  T     ++     +++ L L++  + VV
Sbjct: 366 LVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFHPMPDSCQWPEKMRFLNLSSTGIRVV 425

Query: 116 PTFLLHQYDLKYLDLSHNNL 135
            T +     L+ LD+S+NNL
Sbjct: 426 KTCIPQT--LEVLDVSNNNL 443

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 52.8 bits (127), Expect = 3e-09
 Identities = 36/139 (25%), Positives = 59/139 (42%), Gaps = 4/139 (2%)

Query: 1   LCELKNLFELNLKGNNVEGHLPNCLKYLSHLKVFDISQNQLSGSLSSTITSLTSLEYLDL 60
           L    NL  L LK + +     +    L  L+  D+S N LS   SS    L+SL+YL+L
Sbjct: 46  LRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNL 105

Query: 61  SYNNFEGPCPLSLLAHHSKLEVLVLSSTIL---VKTENFLPTFQLKELGLANCSLNVVPT 117
             N ++     SL  + + L+ L + +      ++  +F     L EL +   SL    +
Sbjct: 106 MGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQS 165

Query: 118 FLLHQ-YDLKYLDLSHNNL 135
             L    D+ +L L  +  
Sbjct: 166 QSLKSIRDIHHLTLHLSES 184

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 48.6 bits (116), Expect = 8e-08
 Identities = 30/135 (22%), Positives = 51/135 (37%), Gaps = 6/135 (4%)

Query: 6   NLFELNLKGNNVEGHLPNCLKYLSHLKVFDISQNQLSGSLSSTITSLTSLEYLDLSYNNF 65
            +  L+L  N +       L+  ++L+V  +  ++++        SL SLE+LDLS N+ 
Sbjct: 27  AMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHL 86

Query: 66  EGPCPLSLLAHHSKLEVLVLSS---TILVKTENFLPTFQLKELGLANCSL--NVVPTFLL 120
                 S     S L+ L L       L  T  F     L+ L + N      +      
Sbjct: 87  SS-LSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFA 145

Query: 121 HQYDLKYLDLSHNNL 135
               L  L++   +L
Sbjct: 146 GLTSLNELEIKALSL 160

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 46.6 bits (111), Expect = 4e-07
 Identities = 21/112 (18%), Positives = 41/112 (36%), Gaps = 5/112 (4%)

Query: 28  LSHLKVFDISQNQLSGSLSSTITSLTSLEYLDLSYNNFEGPCPLSLLAHHSKLEVLVLSS 87
            + +K  D+S N+++      + +  +L+ L L  +                LE L LS 
Sbjct: 25  TAAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTI-EGDAFYSLGSLEHLDLSD 83

Query: 88  TIL--VKTENFLPTFQLKELGLANCSLNVVP--TFLLHQYDLKYLDLSHNNL 135
             L  + +  F P   LK L L       +   +   +  +L+ L + +   
Sbjct: 84  NHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVET 135

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 42.4 bits (100), Expect = 1e-05
 Identities = 21/142 (14%), Positives = 43/142 (30%), Gaps = 10/142 (7%)

Query: 4   LKNLFELNLKGNNVEGHLP-NCLKYLSHLKVFDISQNQLSGSLSSTITSLTSLEYLDLSY 62
           L NL  L +        +       L+ L   +I    L    S ++ S+  + +L L  
Sbjct: 122 LTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHL 181

Query: 63  NNFEGPCPLSLLAHHS---------KLEVLVLSSTILVKTENFLPTFQLKELGLANCSLN 113
           +       +      S          L     S   + +  + +     +   L + S N
Sbjct: 182 SESAFLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFN 241

Query: 114 VVPTFLLHQYDLKYLDLSHNNL 135
            +   L +  +L  ++     L
Sbjct: 242 ELLKLLRYILELSEVEFDDCTL 263

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 40.1 bits (94), Expect = 8e-05
 Identities = 27/152 (17%), Positives = 56/152 (36%), Gaps = 20/152 (13%)

Query: 4   LKNLFELNLKGNNVEGHLPNCLKYLSHLKVFDISQNQLSGSLSSTITSLTSLEYLDLSYN 63
           L +L EL +K  ++  +    LK +  +    +  ++ +  L      L+S+ YL+L   
Sbjct: 147 LTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESAFLLEIFADILSSVRYLELRDT 206

Query: 64  NFEG--PCPLSLLAHHSKLEVLVLSSTILVK------TENFLPTFQLKELGLANCSLNVV 115
           N       PL +    S ++ L    ++L         +      +L E+   +C+LN +
Sbjct: 207 NLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDCTLNGL 266

Query: 116 PTF------------LLHQYDLKYLDLSHNNL 135
             F             +    ++ L +    L
Sbjct: 267 GDFNPSESDVVSELGKVETVTIRRLHIPQFYL 298

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 37.0 bits (86), Expect = 8e-04
 Identities = 22/69 (31%), Positives = 31/69 (44%), Gaps = 2/69 (2%)

Query: 3   ELKNLFELNLKGNNVEGHLPNCLKYLSHLKVFDISQNQLSGSLSSTITSLTSLEYLDLSY 62
            L  L EL +  N ++  LP+       L V  IS+NQL          LTSL+ + L  
Sbjct: 449 FLPRLQELYISRNKLK-TLPDAS-LFPVLLVMKISRNQLKSVPDGIFDRLTSLQKIWLHT 506

Query: 63  NNFEGPCPL 71
           N ++  CP 
Sbjct: 507 NPWDCSCPR 515

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 59.7 bits (145), Expect = 1e-11
 Identities = 31/135 (22%), Positives = 56/135 (41%), Gaps = 4/135 (2%)

Query: 4   LKNLFELNLKGNNVEGHLPNCLKYLSHLKVFDISQNQLSGSLSSTITSLTSLEYLDLSYN 63
           L NL  L +  N++          L+ L+   + +  L+   +  ++ L  L  L L + 
Sbjct: 127 LYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHL 186

Query: 64  NFEGPCPLSLLAHHSKLEVLVLSST--ILVKTENFLPTFQLKELGLANCSLNVVPTFLLH 121
           N              +L+VL +S    +   T N L    L  L + +C+L  VP   + 
Sbjct: 187 NINAIRD-YSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVR 245

Query: 122 QY-DLKYLDLSHNNL 135
               L++L+LS+N +
Sbjct: 246 HLVYLRFLNLSYNPI 260

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 59.7 bits (145), Expect = 1e-11
 Identities = 34/138 (24%), Positives = 54/138 (39%), Gaps = 4/138 (2%)

Query: 1   LCELKNLFELNLKGNNVEGHLPNCLKYLSHLKVFDISQNQLSGSLSSTITSLTSLEYLDL 60
           L  L  L  L L+  N+        K L  LKV +IS      +++       +L  L +
Sbjct: 172 LSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSI 231

Query: 61  SYNNFEGPCPLSLLAHHSKLEVLVLSSTILVKTEN--FLPTFQLKELGLANCSLNVVPTF 118
           ++ N     P   + H   L  L LS   +   E        +L+E+ L    L VV  +
Sbjct: 232 THCNLTAV-PYLAVRHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPY 290

Query: 119 LLHQYD-LKYLDLSHNNL 135
                + L+ L++S N L
Sbjct: 291 AFRGLNYLRVLNVSGNQL 308

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 57.0 bits (138), Expect = 1e-10
 Identities = 37/135 (27%), Positives = 55/135 (40%), Gaps = 4/135 (2%)

Query: 4   LKNLFELNLKGNNVEGHLPNCLKYLSHLKVFDISQNQLSGSLSSTITSLTSLEYLDLSYN 63
             +L EL L  N V    P     L +L+   +  N+L        T L++L  LD+S N
Sbjct: 55  FPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISEN 114

Query: 64  NFEGPCPLSLLAHHSKLEVLVLSSTILVKTEN--FLPTFQLKELGLANCSLNVVPTFLL- 120
                    +      L+ L +    LV   +  F     L++L L  C+L  +PT  L 
Sbjct: 115 KIVIL-LDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALS 173

Query: 121 HQYDLKYLDLSHNNL 135
           H + L  L L H N+
Sbjct: 174 HLHGLIVLRLRHLNI 188

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 53.6 bits (129), Expect = 2e-09
 Identities = 30/136 (22%), Positives = 50/136 (36%), Gaps = 4/136 (2%)

Query: 4   LKNLFELNLKGNNVEGHLPNCLKYLSHLKVFDISQNQLSGSLSSTITSLTSLEYLDLSYN 63
           L  L  L +        +     Y  +L    I+   L+      +  L  L +L+LSYN
Sbjct: 199 LYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYN 258

Query: 64  NFEGPCPLSLLAHHSKLEVLVLSSTIL--VKTENFLPTFQLKELGLANCSLNVVPTFLLH 121
                   S+L    +L+ + L    L  V+   F     L+ L ++   L  +   + H
Sbjct: 259 PISTI-EGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFH 317

Query: 122 Q-YDLKYLDLSHNNLV 136
              +L+ L L  N L 
Sbjct: 318 SVGNLETLILDSNPLA 333

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 52.4 bits (126), Expect = 4e-09
 Identities = 28/133 (21%), Positives = 50/133 (37%), Gaps = 4/133 (3%)

Query: 6   NLFELNLKGNNVEGHLPNCLKYLSHLKVFDISQNQLSGSLSSTITSLTSLEYLDLSYNNF 65
               L+L  N ++    +      HL+  ++++N +S        +L +L  L L  N  
Sbjct: 33  ETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRL 92

Query: 66  EGPCPLSLLAHHSKLEVLVLSSTIL--VKTENFLPTFQLKELGLANCSLNVVPTFLL-HQ 122
           +   PL +    S L  L +S   +  +    F   + LK L + +  L  +        
Sbjct: 93  KLI-PLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGL 151

Query: 123 YDLKYLDLSHNNL 135
             L+ L L   NL
Sbjct: 152 NSLEQLTLEKCNL 164

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 45.1 bits (107), Expect = 1e-06
 Identities = 23/111 (20%), Positives = 46/111 (41%), Gaps = 4/111 (3%)

Query: 29  SHLKVFDISQNQLSGSLSSTITSLTSLEYLDLSYNNFEGPCPLSLLAHHSKLEVLVLSST 88
           +  ++ D+ +N++         S   LE L+L+ N            +   L  L L S 
Sbjct: 32  TETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSA-VEPGAFNNLFNLRTLGLRSN 90

Query: 89  IL--VKTENFLPTFQLKELGLANCSLNVVPTFLLHQ-YDLKYLDLSHNNLV 136
            L  +    F     L +L ++   + ++  ++    Y+LK L++  N+LV
Sbjct: 91  RLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLV 141

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 59.8 bits (145), Expect = 1e-11
 Identities = 32/135 (23%), Positives = 48/135 (35%), Gaps = 5/135 (3%)

Query: 4   LKNLFELNLKGNNVEGHLPNCLKYLSHLKVFDISQNQLSGSLSSTITSLTSLEYLDLSYN 63
           L +L  L L  N++          L+ L   ++  N L+   S     L+ L  L L  N
Sbjct: 98  LHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWLRNN 157

Query: 64  NFEGPCPLSLLAHHSKLEVLVLSST---ILVKTENFLPTFQLKELGLANCSLNVVPTFLL 120
             E   P         L  L L        +    F   F LK L L  C++  +P    
Sbjct: 158 PIES-IPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDMPNL-T 215

Query: 121 HQYDLKYLDLSHNNL 135
               L+ L++S N+ 
Sbjct: 216 PLVGLEELEMSGNHF 230

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 55.9 bits (135), Expect = 2e-10
 Identities = 28/133 (21%), Positives = 45/133 (33%), Gaps = 1/133 (0%)

Query: 4   LKNLFELNLKGNNVEGHLPNCLKYLSHLKVFDISQNQLSGSLSSTITSLTSLEYLDLSYN 63
           L +L  L L  N +        +YLS L+   +  N +    S     + SL  LDL   
Sbjct: 122 LASLNTLELFDNWLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGEL 181

Query: 64  NFEGPCPLSLLAHHSKLEVLVLSSTILVKTENFLPTFQLKELGLANCSLNVVPTFLLHQY 123
                           L+ L L    +    N  P   L+EL ++      +     H  
Sbjct: 182 KKLEYISEGAFEGLFNLKYLNLGMCNIKDMPNLTPLVGLEELEMSGNHFPEIRPGSFHGL 241

Query: 124 D-LKYLDLSHNNL 135
             LK L + ++ +
Sbjct: 242 SSLKKLWVMNSQV 254

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 48.6 bits (116), Expect = 8e-08
 Identities = 33/131 (25%), Positives = 53/131 (40%), Gaps = 5/131 (3%)

Query: 9   ELNLKGNNVEGHLPNCLKYLSHLKVFDISQNQLSGSLSSTITSLTSLEYLDLSYNNFEGP 68
            LNL  NN++    +  ++L HL+V  + +N +          L SL  L+L  N     
Sbjct: 79  YLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTV- 137

Query: 69  CPLSLLAHHSKLEVLVLSSTIL--VKTENFLPTFQLKELGLANC-SLNVVPTFLLHQ-YD 124
            P     + SKL  L L +  +  + +  F     L  L L     L  +        ++
Sbjct: 138 IPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFN 197

Query: 125 LKYLDLSHNNL 135
           LKYL+L   N+
Sbjct: 198 LKYLNLGMCNI 208

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 44.0 bits (104), Expect = 3e-06
 Identities = 25/84 (29%), Positives = 34/84 (40%), Gaps = 1/84 (1%)

Query: 4   LKNLFELNLKGNNVEGHLPNCLKYLSHLKVFDISQNQLSGSLSSTITSLTSLEYLDLSYN 63
           L  L EL + GN+     P     LS LK   +  +Q+S    +    L SL  L+L++N
Sbjct: 217 LVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHN 276

Query: 64  NFEGPCPLSLLAHHSKLEVLVLSS 87
           N     P  L      L  L L  
Sbjct: 277 NLSS-LPHDLFTPLRYLVELHLHH 299

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 41.3 bits (97), Expect = 3e-05
 Identities = 34/134 (25%), Positives = 53/134 (39%), Gaps = 26/134 (19%)

Query: 4   LKNLFELNLKGNNVEGHLPNCLKYLSHLKVFDISQNQLSGSLSSTITSLTSLEYLDLSYN 63
           L NL  LNL   N++  +PN L  L  L+  ++S N        +   L+SL+ L +  +
Sbjct: 195 LFNLKYLNLGMCNIK-DMPN-LTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNS 252

Query: 64  NFEGPCPLSLLAHHSKLEVLVLSSTILVKTENFLPTFQLKELGLANCSLNVVPTFLLHQY 123
                  +SL+  ++                 F     L EL LA+ +L+ +P  L    
Sbjct: 253 Q------VSLIERNA-----------------FDGLASLVELNLAHNNLSSLPHDLFTPL 289

Query: 124 D-LKYLDLSHNNLV 136
             L  L L HN   
Sbjct: 290 RYLVELHLHHNPWN 303

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 40.5 bits (95), Expect = 5e-05
 Identities = 24/109 (22%), Positives = 44/109 (40%), Gaps = 4/109 (3%)

Query: 29  SHLKVFDISQNQLSGSLSSTITSLTSLEYLDLSYNNFEGPCPLSLLAHHSKLEVLVLSST 88
           S+ +  ++ +N +    + T   L  LE L L  N+      +      + L  L L   
Sbjct: 75  SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQI-EVGAFNGLASLNTLELFDN 133

Query: 89  IL--VKTENFLPTFQLKELGLANCSLNVVPTFLLHQ-YDLKYLDLSHNN 134
            L  + +  F    +L+EL L N  +  +P++  ++   L  LDL    
Sbjct: 134 WLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELK 182

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 59.5 bits (144), Expect = 1e-11
 Identities = 30/152 (19%), Positives = 51/152 (33%), Gaps = 22/152 (14%)

Query: 1   LCELKNLFELNLKGN-------NVEGHLPNCLKYLSHLKVFDISQNQLSG-SLSSTITSL 52
                 +  + L  N       N         K    L   D+  N+L+  S     T+L
Sbjct: 693 FATGSPISTIILSNNLMTSIPENSLKPKDGNYKNTYLLTTIDLRFNKLTSLSDDFRATTL 752

Query: 53  TSLEYLDLSYNNFEG-PCPLSLLAHHSKLEVLVLSSTILVKTENFLPTF--------QLK 103
             L  +D+SYN F   P   +   + S+L+   +      +    L  +         L 
Sbjct: 753 PYLSNMDVSYNCFSSFP---TQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLI 809

Query: 104 ELGLANCSLNVVPTFLLHQYDLKYLDLSHNNL 135
           +L + +  +  V   L  Q  L  LD++ N  
Sbjct: 810 QLQIGSNDIRKVDEKLTPQ--LYILDIADNPN 839

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 59.1 bits (143), Expect = 2e-11
 Identities = 17/146 (11%), Positives = 39/146 (26%), Gaps = 12/146 (8%)

Query: 1   LCELKNLFELNLKGNNVEGHLPNCLKYLSHLKVFDISQNQLSGSLSSTITSLTSLEYLDL 60
                +  + N        +       L  L   ++        L   +  L  L+ L++
Sbjct: 463 DNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNI 522

Query: 61  SYNNFEGPCPL--------SLLAHHSKLEVLVLSS---TILVKTENFLPTFQLKELGLAN 109
           + N       L               K+++  +          + +     +L  L   +
Sbjct: 523 ACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEEFPASASLQKMVKLGLLDCVH 582

Query: 110 CSLNVVPTFLLHQYDLKYLDLSHNNL 135
             +  +  F      L  L L +N +
Sbjct: 583 NKVRHLEAF-GTNVKLTDLKLDYNQI 607

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 59.1 bits (143), Expect = 2e-11
 Identities = 29/149 (19%), Positives = 53/149 (35%), Gaps = 17/149 (11%)

Query: 1   LCELKNLFELNLKGNNVEG---------HLPNCLKYLSHLKVFDISQNQLSG-SLSSTIT 50
           L +L  L  LN+  N              L +       +++F +  N L     S+++ 
Sbjct: 511 LYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEEFPASASLQ 570

Query: 51  SLTSLEYLDLSYNNFEGPCPLSLLAHHSKLEVLVLSSTILVK--TENFLPTFQLKELGLA 108
            +  L  LD  +N               KL  L L    + +   +    T Q++ LG +
Sbjct: 571 KMVKLGLLDCVHNKVRHLEAFGTN---VKLTDLKLDYNQIEEIPEDFCAFTDQVEGLGFS 627

Query: 109 NCSLNVVP--TFLLHQYDLKYLDLSHNNL 135
           +  L  +P        Y +  +D S+N +
Sbjct: 628 HNKLKYIPNIFNAKSVYVMGSVDFSYNKI 656

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 56.4 bits (136), Expect = 2e-10
 Identities = 18/147 (12%), Positives = 40/147 (27%), Gaps = 14/147 (9%)

Query: 1   LCELKNLFELNLKGNNVEGHLPNCLK-----YLSHLKVFDISQNQLSGSLSSTITSLTSL 55
              +  +  ++   N +     N           +     +S N++    +    + + +
Sbjct: 640 AKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQKFPTELFATGSPI 699

Query: 56  EYLDLSYNNFE------GPCPLSLLAHHSKLEVLVLSS---TILVKTENFLPTFQLKELG 106
             + LS N                  +   L  + L     T L           L  + 
Sbjct: 700 STIILSNNLMTSIPENSLKPKDGNYKNTYLLTTIDLRFNKLTSLSDDFRATTLPYLSNMD 759

Query: 107 LANCSLNVVPTFLLHQYDLKYLDLSHN 133
           ++    +  PT  L+   LK   + H 
Sbjct: 760 VSYNCFSSFPTQPLNSSQLKAFGIRHQ 786

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 54.9 bits (132), Expect = 6e-10
 Identities = 22/143 (15%), Positives = 44/143 (30%), Gaps = 10/143 (6%)

Query: 1   LCELKNLFELNLKGNNVEGHLPNCLKYLSHLKVFDISQNQLSGSLSSTITSLTSLEYLDL 60
           L ++  L  L+   N V  HL         L    +  NQ+             +E L  
Sbjct: 569 LQKMVKLGLLDCVHNKVR-HLEA-FGTNVKLTDLKLDYNQIEEIPEDFCAFTDQVEGLGF 626

Query: 61  SYNNFEGPCPLSLLAHHSKLEVLVLS----STILVKTENFLPTFQ---LKELGLANCSLN 113
           S+N  +    +        +  +  S     +        +  ++      + L+   + 
Sbjct: 627 SHNKLKYIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQ 686

Query: 114 VVPTFLLHQ-YDLKYLDLSHNNL 135
             PT L      +  + LS+N +
Sbjct: 687 KFPTELFATGSPISTIILSNNLM 709

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 53.7 bits (129), Expect = 1e-09
 Identities = 17/142 (11%), Positives = 46/142 (32%), Gaps = 7/142 (4%)

Query: 1   LCELKNLFELNLKGNNVEGHLPNCLKYLSHLKVFDISQNQLSGSLSSTITSLTSLEYLDL 60
           L     +  L+L G   +G +P+ +  L+ LKV     +  + S         + +  + 
Sbjct: 319 LDNNGRVTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEE 378

Query: 61  SYNNFEGPCPLSLLAHHSKLEVLVLSSTILVKTENFLPTFQLKELGLANCSLNV------ 114
             +          L +  +L +  L    + +     P  +   + L +  +        
Sbjct: 379 RKHRIRMHYKKMFLDYDQRLNLSDLLQDAINRNPEMKPIKKDSRISLKDTQIGNLTNRIT 438

Query: 115 -VPTFLLHQYDLKYLDLSHNNL 135
            +   +     L+ +  +++  
Sbjct: 439 FISKAIQRLTKLQIIYFANSPF 460

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 44.9 bits (106), Expect = 2e-06
 Identities = 23/139 (16%), Positives = 50/139 (35%), Gaps = 14/139 (10%)

Query: 3   ELKNLFELNLKGNNVEGHLPNCLKYLSHLKVFDISQNQLSGSLSSTITSLTSLEYLDLSY 62
            L +L +  +  N     +    +            N+++  +S  I  LT L+ +  + 
Sbjct: 399 NLSDLLQDAINRNPEMKPIKKDSRISLKDTQIGNLTNRIT-FISKAIQRLTKLQIIYFAN 457

Query: 63  NNFEGPCPLSLLAHHSKLEVLVLSSTILVKTENFLPTF----QLKELGLANCS-LNVVPT 117
           + F                    +S    + EN   ++     L ++ L NC  +  +P 
Sbjct: 458 SPFTYDNIAVDW--------EDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPD 509

Query: 118 FLLHQYDLKYLDLSHNNLV 136
           FL    +L+ L+++ N  +
Sbjct: 510 FLYDLPELQSLNIACNRGI 528

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 42.9 bits (101), Expect = 8e-06
 Identities = 18/129 (13%), Positives = 35/129 (27%), Gaps = 3/129 (2%)

Query: 9   ELNLKGNNVEGHLPNCLKYLSHLKVFDISQNQLSGSLSSTITSLTSLEYLDLSYNNFEGP 68
             N + +         L     +    ++     G +   I  LT L+ L    ++    
Sbjct: 303 NFNKELDMWGDQPGVDLDNNGRVTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETVS 362

Query: 69  CPLSLLAHHSKLEVLVLSSTI-LVKTENFLPTFQ-LKELGLANCSLNVVPTFLLHQYDLK 126
             L      +          I +   + FL   Q L    L   ++N  P  +       
Sbjct: 363 GRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSDLLQDAINRNPE-MKPIKKDS 421

Query: 127 YLDLSHNNL 135
            + L    +
Sbjct: 422 RISLKDTQI 430

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 57.7 bits (140), Expect = 5e-11
 Identities = 31/136 (22%), Positives = 57/136 (41%), Gaps = 4/136 (2%)

Query: 4   LKNLFELNLKGNNVEGHLPNCL-KYLSHLKVFDISQNQLSGSLSSTITSLTSLEYLDLSY 62
           L+ L  L+ + +N++      +   L +L   DIS      + +     L+SLE L ++ 
Sbjct: 100 LEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAG 159

Query: 63  NNFEGPCPLSLLAHHSKLEVLVLSSTIL--VKTENFLPTFQLKELGLANCSLNVVPTFLL 120
           N+F+      +      L  L LS   L  +    F     L+ L +++ +   + TF  
Sbjct: 160 NSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPY 219

Query: 121 -HQYDLKYLDLSHNNL 135
                L+ LD S N++
Sbjct: 220 KCLNSLQVLDYSLNHI 235

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 55.0 bits (133), Expect = 4e-10
 Identities = 37/139 (26%), Positives = 57/139 (41%), Gaps = 7/139 (5%)

Query: 3   ELKNLFELNLKGNN--VEGHLPNCLKYLSHLKVFDISQNQLSGSLSSTITSLTSLEYLDL 60
           +L  L +L+L  N    +G         + LK  D+S N +  ++SS    L  LE+LD 
Sbjct: 50  KLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVI-TMSSNFLGLEQLEHLDF 108

Query: 61  SYNNFEGPCPLSLLAHHSKLEVLVLSSTIL--VKTENFLPTFQLKELGLANCSL--NVVP 116
            ++N +     S+      L  L +S T         F     L+ L +A  S   N +P
Sbjct: 109 QHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLP 168

Query: 117 TFLLHQYDLKYLDLSHNNL 135
                  +L +LDLS   L
Sbjct: 169 DIFTELRNLTFLDLSQCQL 187

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 53.1 bits (128), Expect = 2e-09
 Identities = 30/137 (21%), Positives = 52/137 (37%), Gaps = 6/137 (4%)

Query: 4   LKNLFELNLKGNNVEGHLPNCLKYLSHLKVFDISQNQLSGSLSSTI-TSLTSLEYLDLSY 62
           L+NL  L++   +           LS L+V  ++ N    +    I T L +L +LDLS 
Sbjct: 125 LRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQ 184

Query: 63  NNFEGPCPLSLLAHHSKLEVLVLSSTIL--VKTENFLPTFQLKELGLANCSLNVVP--TF 118
              E     +     S L+VL +S      + T  +     L+ L  +   +        
Sbjct: 185 CQLEQL-SPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQEL 243

Query: 119 LLHQYDLKYLDLSHNNL 135
                 L +L+L+ N+ 
Sbjct: 244 QHFPSSLAFLNLTQNDF 260

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 51.6 bits (124), Expect = 7e-09
 Identities = 32/137 (23%), Positives = 53/137 (38%), Gaps = 10/137 (7%)

Query: 6   NLFELNLKGNNVEGHLPNCLKYLSHLKVFDISQNQLS--GSLSSTITSLTSLEYLDLSYN 63
           +   L L+ N ++         L+ L    +S N LS  G  S +    TSL+YLDLS+N
Sbjct: 29  SATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFN 88

Query: 64  NFEG-PCPLSLLAHHSKLEVLVLSS---TILVKTENFLPTFQLKELGLANCSLNVVPTFL 119
                    S      +LE L         + +   FL    L  L +++    V    +
Sbjct: 89  GVITMS---SNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGI 145

Query: 120 LHQ-YDLKYLDLSHNNL 135
            +    L+ L ++ N+ 
Sbjct: 146 FNGLSSLEVLKMAGNSF 162

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 47.7 bits (114), Expect = 2e-07
 Identities = 29/111 (26%), Positives = 45/111 (40%), Gaps = 4/111 (3%)

Query: 29  SHLKVFDISQNQLSGSLSSTITSLTSLEYLDLSYNNFE-GPCPLSLLAHHSKLEVLVLSS 87
           S     ++  N+L          LT L  L LS N      C        + L+ L LS 
Sbjct: 28  SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSF 87

Query: 88  TILVK-TENFLPTFQLKELGLANCSLNVVP--TFLLHQYDLKYLDLSHNNL 135
             ++  + NFL   QL+ L   + +L  +   +  L   +L YLD+SH + 
Sbjct: 88  NGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHT 138

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 57.2 bits (139), Expect = 8e-11
 Identities = 28/135 (20%), Positives = 53/135 (39%), Gaps = 7/135 (5%)

Query: 1   LCELKNLFELNLKGNNVEGHLPNCLKYLSHLKVFDISQNQLSGSLSSTITSLTSLEYLDL 60
           L  L  ++ LNL  N+    L   L  ++ L    ++++++     + I +LT L  L L
Sbjct: 128 LANLTKMYSLNLGANHNLSDLSP-LSNMTGLNYLTVTESKVKDV--TPIANLTDLYSLSL 184

Query: 61  SYNNFEGPCPLSLLAHHSKLEVLVLSSTILVKTENFLPTFQLKELGLANCSLNVVPTFLL 120
           +YN  E   PL+ L   + L         +          +L  L + N  +  +     
Sbjct: 185 NYNQIEDISPLASL---TSLHYFTAYVNQITDITPVANMTRLNSLKIGNNKITDLSPLAN 241

Query: 121 HQYDLKYLDLSHNNL 135
               L +L++  N +
Sbjct: 242 LS-QLTWLEIGTNQI 255

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 56.4 bits (137), Expect = 1e-10
 Identities = 30/136 (22%), Positives = 54/136 (39%), Gaps = 8/136 (5%)

Query: 1   LCELKNLFELNLKGNNVEGHLPNCLKYLSHLKVFDISQNQLSGSLSSTITSLTSLEYLDL 60
           L  L +L       N +    P  +  ++ L    I  N+++    S + +L+ L +L++
Sbjct: 195 LASLTSLHYFTAYVNQITDITP--VANMTRLNSLKIGNNKITDL--SPLANLSQLTWLEI 250

Query: 61  SYNNFEGPCPLSLLAHHSKLEVLVLSSTILVKTENFLPTFQLKELGLANCSL-NVVPTFL 119
             N       +  L   +KL++L + S  +          QL  L L N  L N     +
Sbjct: 251 GTNQISDINAVKDL---TKLKMLNVGSNQISDISVLNNLSQLNSLFLNNNQLGNEDMEVI 307

Query: 120 LHQYDLKYLDLSHNNL 135
               +L  L LS N++
Sbjct: 308 GGLTNLTTLFLSQNHI 323

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 53.7 bits (130), Expect = 1e-09
 Identities = 36/136 (26%), Positives = 58/136 (42%), Gaps = 9/136 (6%)

Query: 1   LCELKNLFELNLKGNNVEGHLPNCLKYLSHLKVFDISQNQLSGSLSSTITSLTSLEYLDL 60
           +  L NL  LNL GN +    P  L  L  L    I  N+++    S + +LT+L  L L
Sbjct: 62  IEYLTNLEYLNLNGNQITDISP--LSNLVKLTNLYIGTNKITDI--SALQNLTNLRELYL 117

Query: 61  SYNNFEGPCPLSLLAHHSKLEVLVLSSTILVKTENFLPTF-QLKELGLANCSLNVVPTFL 119
           + +N     PL+ L   +K+  L L +   +   + L     L  L +    +  V    
Sbjct: 118 NEDNISDISPLANL---TKMYSLNLGANHNLSDLSPLSNMTGLNYLTVTESKVKDVTPI- 173

Query: 120 LHQYDLKYLDLSHNNL 135
            +  DL  L L++N +
Sbjct: 174 ANLTDLYSLSLNYNQI 189

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 52.2 bits (126), Expect = 4e-09
 Identities = 29/136 (21%), Positives = 57/136 (41%), Gaps = 8/136 (5%)

Query: 1   LCELKNLFELNLKGNNVEGHLPNCLKYLSHLKVFDISQNQLSGSLSSTITSLTSLEYLDL 60
             +L       L+  +V   +    + L  +    ++  +++ S+   I  LT+LEYL+L
Sbjct: 18  DADLAEGIRAVLQKASVTDVVT--QEELESITKLVVAGEKVA-SIQG-IEYLTNLEYLNL 73

Query: 61  SYNNFEGPCPLSLLAHHSKLEVLVLSSTILVKTENFLPTFQLKELGLANCSLNVVPTFLL 120
           + N      PLS L    KL  L + +  +           L+EL L   +++ +   L 
Sbjct: 74  NGNQITDISPLSNL---VKLTNLYIGTNKITDISALQNLTNLRELYLNEDNISDIS-PLA 129

Query: 121 HQYDLKYLDLSHNNLV 136
           +   +  L+L  N+ +
Sbjct: 130 NLTKMYSLNLGANHNL 145

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 46.0 bits (110), Expect = 5e-07
 Identities = 25/87 (28%), Positives = 39/87 (44%), Gaps = 5/87 (5%)

Query: 1   LCELKNLFELNLKGNNVEGHLPNCLKYLSHLKVFDISQNQLSGSLSSTITSLTSLEYLDL 60
           + +L  L  LN+  N +     + L  LS L    ++ NQL       I  LT+L  L L
Sbjct: 261 VKDLTKLKMLNVGSNQISD--ISVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFL 318

Query: 61  SYNNFEGPCPLSLLAHHSKLEVLVLSS 87
           S N+     PL+ L   SK++    ++
Sbjct: 319 SQNHITDIRPLASL---SKMDSADFAN 342

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 44.5 bits (106), Expect = 2e-06
 Identities = 20/133 (15%), Positives = 41/133 (30%), Gaps = 13/133 (9%)

Query: 4   LKNLFELNLKGNNVEGHLPNCLKYLSHLKVFDISQNQLSGSLSSTITSLTSLEYLDLSYN 63
              L  L    N +          L+      + +  ++     T   L S+  L ++  
Sbjct: 2   AATLATLPAPINQIFP-----DADLAEGIRAVLQKASVTDV--VTQEELESITKLVVAGE 54

Query: 64  NFEGPCPLSLLAHHSKLEVLVLSSTILVKTENFLPTFQLKELGLANCSLNVVPTFL-LHQ 122
                  +  L   + LE L L+   +          +L  L +    +  +     L  
Sbjct: 55  KVASIQGIEYL---TNLEYLNLNGNQITDISPLSNLVKLTNLYIGTNKITDISALQNLTN 111

Query: 123 YDLKYLDLSHNNL 135
             L+ L L+ +N+
Sbjct: 112 --LRELYLNEDNI 122

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 41.8 bits (99), Expect = 2e-05
 Identities = 14/64 (21%), Positives = 26/64 (40%), Gaps = 2/64 (3%)

Query: 1   LCELKNLFELNLKGNNVEGHLPNCLKYLSHLKVFDISQNQLSGSLSSTITSLTSLEYLDL 60
           L  L  L  L L  N +       +  L++L    +SQN ++      + SL+ ++  D 
Sbjct: 283 LNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDI--RPLASLSKMDSADF 340

Query: 61  SYNN 64
           +   
Sbjct: 341 ANQV 344

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 57.1 bits (138), Expect = 1e-10
 Identities = 34/136 (25%), Positives = 56/136 (41%), Gaps = 4/136 (2%)

Query: 4   LKNLFELNLKGNNVEGHLPNCLKYLSHLKVFDISQNQLSGSLSSTITSLTSLEYLDLSYN 63
             NL  L L  N +     +    L  L+  D+S N LS   SS    L+SL +L+L  N
Sbjct: 75  CVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGN 134

Query: 64  NFEGPCPLSLLAHHSKLEVLVLSSTILVKT---ENFLPTFQLKELGLANCSLNVVPTFLL 120
            ++     SL +H +KL++L + +         ++F     L+EL +    L       L
Sbjct: 135 PYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSL 194

Query: 121 HQ-YDLKYLDLSHNNL 135
               ++ +L L     
Sbjct: 195 KSIQNVSHLILHMKQH 210

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 49.7 bits (119), Expect = 3e-08
 Identities = 24/141 (17%), Positives = 51/141 (36%), Gaps = 9/141 (6%)

Query: 4   LKNLFELNLKGNNVEGHLPNCLKYLSHLKVFDISQNQLSGSLSSTITSLTSLEYLDLSYN 63
           L  L EL +  ++++ + P  LK + ++    +   Q    L   +   +S+E L+L   
Sbjct: 173 LTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDT 232

Query: 64  NFEGPCPLSL-------LAHHSKLEVLVLSS-TILVKTENFLPTFQLKELGLANCSLNVV 115
           + +      L       L        + ++  ++    +       L EL  +   L  V
Sbjct: 233 DLDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRNQLKSV 292

Query: 116 PTFLLHQYD-LKYLDLSHNNL 135
           P  +  +   L+ + L  N  
Sbjct: 293 PDGIFDRLTSLQKIWLHTNPW 313

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 43.6 bits (103), Expect = 5e-06
 Identities = 31/135 (22%), Positives = 55/135 (40%), Gaps = 6/135 (4%)

Query: 6   NLFELNLKGNNVEGHLPNCLKYLSHLKVFDISQNQLSGSLSSTITSLTSLEYLDLSYNNF 65
            +  L+L  N +     + L+   +L+   ++ N ++     + +SL SLE+LDLSYN  
Sbjct: 53  AVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYL 112

Query: 66  EGPCPLSLLAHHSKLEVLVLSS---TILVKTENFLPTFQLKELGLANCSL--NVVPTFLL 120
                 S     S L  L L       L +T  F    +L+ L + N      +      
Sbjct: 113 SN-LSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFA 171

Query: 121 HQYDLKYLDLSHNNL 135
               L+ L++  ++L
Sbjct: 172 GLTFLEELEIDASDL 186

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 56.5 bits (137), Expect = 1e-10
 Identities = 28/132 (21%), Positives = 55/132 (41%), Gaps = 8/132 (6%)

Query: 4   LKNLFELNLKGNNVEGHLPNCLKYLSHLKVFDISQNQLSGSLSSTITSLTSLEYLDLSYN 63
                   +  ++++  L +  +   ++K  D+S N LS   ++ +   T LE L+LS N
Sbjct: 9   GNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSN 68

Query: 64  NFEGPCPLSLLAHHSKLEVLVLSSTILVKTENFLPTFQLKELGLANCSLNVVPTFLLHQY 123
                  L  L   S L  L L++  +   +  L    ++ L  AN +++ V        
Sbjct: 69  VLYETLDLESL---STLRTLDLNNNYV---QELLVGPSIETLHAANNNISRVSCSRGQG- 121

Query: 124 DLKYLDLSHNNL 135
             K + L++N +
Sbjct: 122 -KKNIYLANNKI 132

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 56.2 bits (136), Expect = 2e-10
 Identities = 24/135 (17%), Positives = 52/135 (38%), Gaps = 3/135 (2%)

Query: 1   LCELKNLFELNLKGNNVEGHLPNCLKYLSHLKVFDISQNQLSGSLSSTITSLTSLEYLDL 60
           L    ++  L+   NN+     +  +   ++    ++ N+++          + ++YLDL
Sbjct: 95  LLVGPSIETLHAANNNISRVSCSRGQGKKNI---YLANNKITMLRDLDEGCRSRVQYLDL 151

Query: 61  SYNNFEGPCPLSLLAHHSKLEVLVLSSTILVKTENFLPTFQLKELGLANCSLNVVPTFLL 120
             N  +      L A    LE L L    +   +  +   +LK L L++  L  +     
Sbjct: 152 KLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVKGQVVFAKLKTLDLSSNKLAFMGPEFQ 211

Query: 121 HQYDLKYLDLSHNNL 135
               + ++ L +N L
Sbjct: 212 SAAGVTWISLRNNKL 226

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 51.5 bits (124), Expect = 7e-09
 Identities = 17/130 (13%), Positives = 40/130 (30%), Gaps = 3/130 (2%)

Query: 4   LKNLFELNLKGNNVEGHLPNCLKYLSHLKVFDISQNQLSGSLSSTITSLTSLEYLDLSYN 63
              L  L+L  N +   +    +  + +    +  N+L   +   +    +LE+ DL  N
Sbjct: 190 FAKLKTLDLSSNKLA-FMGPEFQSAAGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGN 247

Query: 64  NFEGPCPLSLLAHHSKLEVLVLSSTILVKTENFLPTFQLKELGLANCSLNVVPT-FLLHQ 122
            F         + + +++ +   +   +  +N                   +P  F    
Sbjct: 248 GFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQNEEECTVPTLGHYGAYCCEDLPAPFADRL 307

Query: 123 YDLKYLDLSH 132
             L +    H
Sbjct: 308 IALGHHHHHH 317

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 40.7 bits (96), Expect = 3e-05
 Identities = 25/139 (17%), Positives = 53/139 (38%), Gaps = 15/139 (10%)

Query: 1   LCELKNLFELNLKGNNVEGHLPNCLKYLSHLKVFDISQNQLSGSLSSTITSLTSLEYLDL 60
           L     L  LNL  N +     + L+ LS L+  D++ N +       +    S+E L  
Sbjct: 54  LAPFTKLELLNLSSNVLY-ETLD-LESLSTLRTLDLNNNYV-----QELLVGPSIETLHA 106

Query: 61  SYNNFEGPCPLSLLAHHSKLEVLVLSSTIL--VKTENFLPTFQLKELGLANCSLNVVP-- 116
           + NN                + + L++  +  ++  +     +++ L L    ++ V   
Sbjct: 107 ANNNISRVSCSRG----QGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFA 162

Query: 117 TFLLHQYDLKYLDLSHNNL 135
                   L++L+L +N +
Sbjct: 163 ELAASSDTLEHLNLQYNFI 181

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 56.7 bits (137), Expect = 1e-10
 Identities = 31/145 (21%), Positives = 48/145 (33%), Gaps = 13/145 (8%)

Query: 4   LKNLFELNLKGNNVEGHLPNCLKYLSHLKVFDISQNQLSGSL--SSTITSLTSLEYLDLS 61
           L NL  L+L  + +    P+  + L HL    +    LS ++       +L +L  LDLS
Sbjct: 72  LPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLS 131

Query: 62  YNNFEGPCPLSLLAHHSKLEVLVLS----STILVKTENFLPTFQLKELGLANCSLNVVPT 117
            N              + L+ +  S      +       L    L    LA  SL    +
Sbjct: 132 KNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAANSLYSRVS 191

Query: 118 F-------LLHQYDLKYLDLSHNNL 135
                         L+ LD+S N  
Sbjct: 192 VDWGKCMNPFRNMVLEILDVSGNGW 216

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 56.4 bits (136), Expect = 2e-10
 Identities = 29/140 (20%), Positives = 53/140 (37%), Gaps = 6/140 (4%)

Query: 1   LCELKNLFELNLKGNNVEGHLPNCLKYL--SHLKVFDISQNQLSGSLSSTITSLTSLEYL 58
           L    ++       +N++    N    L  S ++  D+S   +    S    +L  L+ L
Sbjct: 236 LILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVL 295

Query: 59  DLSYNNFEGPCPLSLLAHHSKLEVLVLSSTIL--VKTENFLPTFQLKELGLANCSLNVVP 116
           +L+YN                L+VL LS  +L  + + NF    ++  + L    + ++ 
Sbjct: 296 NLAYNKINK-IADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQ 354

Query: 117 TFLLHQ-YDLKYLDLSHNNL 135
                    L+ LDL  N L
Sbjct: 355 DQTFKFLEKLQTLDLRDNAL 374

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 54.8 bits (132), Expect = 6e-10
 Identities = 25/139 (17%), Positives = 44/139 (31%), Gaps = 8/139 (5%)

Query: 4   LKNLFELNLKGNNVEGHLPNCLKYLSHLKVFDISQNQLSGSL-SSTITSLTSLEYLDLSY 62
           L     L L  N +     +   +L  L++ ++       ++      +L +L  LDL  
Sbjct: 23  LNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGS 82

Query: 63  NNFEGPCPLSLLAHHSKLEVLVLS----STILVKTENFLPTFQLKELGLANCSLNVVP-- 116
           +                L  L L     S  ++K   F     L  L L+   +  +   
Sbjct: 83  SKIYFL-HPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLH 141

Query: 117 TFLLHQYDLKYLDLSHNNL 135
                   LK +D S N +
Sbjct: 142 PSFGKLNSLKSIDFSSNQI 160

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 52.9 bits (127), Expect = 3e-09
 Identities = 36/132 (27%), Positives = 54/132 (40%), Gaps = 7/132 (5%)

Query: 4   LKNLFELNLKGNNVEGHLPNCLKYLSHLKVFDISQNQLSGSLSSTITSLTSLEYLDLSYN 63
           LK+L  LNL  N +          L +L+V ++S N L    SS    L  + Y+DL  N
Sbjct: 289 LKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKN 348

Query: 64  NFEGPCPLSLLAHHSKLEVLVLSSTILVKTENFLPTFQLKELGLANCSLNVVPTFLLHQY 123
           +              KL+ L L    L  T +F+P   + ++ L+   L  +P   L   
Sbjct: 349 HIAI-IQDQTFKFLEKLQTLDLRDNAL-TTIHFIP--SIPDIFLSGNKLVTLPKINL--- 401

Query: 124 DLKYLDLSHNNL 135
               + LS N L
Sbjct: 402 TANLIHLSENRL 413

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 52.5 bits (126), Expect = 4e-09
 Identities = 36/134 (26%), Positives = 58/134 (43%), Gaps = 9/134 (6%)

Query: 10  LNLKGNNVEG-HLPNCLKYLSHLKVFDISQNQLSG-SLSSTITSLTSLEYLDLSYNNFEG 67
           ++L  N +E   +   L  + HL++  ++QN+ S  S   T +   SLE L L  N  + 
Sbjct: 406 IHLSENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQL 465

Query: 68  P----CPLSLLAHHSKLEVLVLSSTIL--VKTENFLPTFQLKELGLANCSLNVVPTFLLH 121
                    +    S L+VL L+   L  +    F     L+ L L +  L V+    L 
Sbjct: 466 AWETELCWDVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLTVLSHNDL- 524

Query: 122 QYDLKYLDLSHNNL 135
             +L+ LD+S N L
Sbjct: 525 PANLEILDISRNQL 538

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 51.7 bits (124), Expect = 7e-09
 Identities = 30/144 (20%), Positives = 56/144 (38%), Gaps = 13/144 (9%)

Query: 1   LCELKNLFELNLKGNNVEGHLPNCLKYLSHLKVFDISQNQLSG-SLSSTITSLTSLEYLD 59
           +  + ++ ++ L GN     L    K      +  +S+N+L    +   +  +  L+ L 
Sbjct: 377 IHFIPSIPDIFLSGNK----LVTLPKINLTANLIHLSENRLENLDILYFLLRVPHLQILI 432

Query: 60  LSYNNFEGPCPLSLLAHHSKLEVLVLSSTIL-------VKTENFLPTFQLKELGLANCSL 112
           L+ N F         + +  LE L L   +L       +  + F     L+ L L +  L
Sbjct: 433 LNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHNYL 492

Query: 113 NVVPTFLLHQYD-LKYLDLSHNNL 135
           N +P  +      L+ L L+ N L
Sbjct: 493 NSLPPGVFSHLTALRGLSLNSNRL 516

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 51.7 bits (124), Expect = 9e-09
 Identities = 27/132 (20%), Positives = 54/132 (40%), Gaps = 7/132 (5%)

Query: 6   NLFELNLKGNNVEGHLPNCLKYLSHLKVFDISQNQLSGSLSSTITSLTSLEYLDLSYNNF 65
           ++  L+L    V        + L  LKV +++ N+++         L +L+ L+LSYN  
Sbjct: 267 SVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLL 326

Query: 66  EGPCPLSLLAHHSKLEVLVLSSTIL--VKTENFLPTFQLKELGLANCSLNVVPTFLLHQY 123
                 +      K+  + L    +  ++ + F    +L+ L L + +L    T +    
Sbjct: 327 GELYSSN-FYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNAL----TTIHFIP 381

Query: 124 DLKYLDLSHNNL 135
            +  + LS N L
Sbjct: 382 SIPDIFLSGNKL 393

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 49.8 bits (119), Expect = 4e-08
 Identities = 29/135 (21%), Positives = 49/135 (36%), Gaps = 9/135 (6%)

Query: 3   ELKNLFELNLKGNNVEGHLPNCLKYLSHLKVFDISQNQLSGSLSSTITSLTSLEYLDLSY 62
            L  +  ++L+ N++        K+L  L+  D+  N L+     TI  + S+  + LS 
Sbjct: 336 GLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALT-----TIHFIPSIPDIFLSG 390

Query: 63  NNFEGPCPLSLLAHHSKLEVLVLSSTILVKTENFLPTFQLKELGLANCSLNVVP--TFLL 120
           N       ++L A+   L    L +  L      L    L+ L L     +         
Sbjct: 391 NKLVTLPKINLTANLIHLSENRLEN--LDILYFLLRVPHLQILILNQNRFSSCSGDQTPS 448

Query: 121 HQYDLKYLDLSHNNL 135
               L+ L L  N L
Sbjct: 449 ENPSLEQLFLGENML 463

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 46.7 bits (111), Expect = 4e-07
 Identities = 31/160 (19%), Positives = 50/160 (31%), Gaps = 25/160 (15%)

Query: 1   LCELKNLFELNLKGNNVEGHL--PNCLKYLSHLKVFDISQNQLSG-SLSSTITSLTSLEY 57
              L +LFEL L    +   +      + L  L   D+S+NQ+    L  +   L SL+ 
Sbjct: 93  FQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKS 152

Query: 58  LDLSYNNFEGPCPLSLLA-HHSKLEVLVLSSTILV--------KTENFLPTFQLKELGLA 108
           +D S N     C   L       L    L++  L         K  N      L+ L ++
Sbjct: 153 IDFSSNQIFLVCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVS 212

Query: 109 NCSLNVVPTFLLHQ-------------YDLKYLDLSHNNL 135
                V  T                  + +       +N+
Sbjct: 213 GNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNI 252

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 44.0 bits (104), Expect = 3e-06
 Identities = 24/89 (26%), Positives = 39/89 (43%), Gaps = 8/89 (8%)

Query: 4   LKNLFELNLKGNNVEGHLPNCL-----KYLSHLKVFDISQNQLSGSLSSTITSLTSLEYL 58
             +L +L L  N ++      L     + LSHL+V  ++ N L+       + LT+L  L
Sbjct: 450 NPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTALRGL 509

Query: 59  DLSYNNFEGPCPLSLLAHHSKLEVLVLSS 87
            L+ N       LS     + LE+L +S 
Sbjct: 510 SLNSNRLTV---LSHNDLPANLEILDISR 535

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 41.3 bits (97), Expect = 3e-05
 Identities = 27/161 (16%), Positives = 52/161 (32%), Gaps = 25/161 (15%)

Query: 1   LCELKNLFELNLKGNNVEG-HLPNCLKYLSHLKVFDISQNQLSGSLSSTITSLT--SLEY 57
              LK L  L+L  N +   +L      L+ LK  D S NQ+       +  L   +L +
Sbjct: 119 FRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSF 178

Query: 58  LDLSYNNFEGPCPLSLLAHHSKLEVLVLSSTIL-------------------VKTENFLP 98
             L+ N+      +      +    +VL    +                    +  + + 
Sbjct: 179 FSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLIL 238

Query: 99  TFQLKELGLANCSLNVVPTFL---LHQYDLKYLDLSHNNLV 136
              +   G    ++          L +  +++LDLSH  + 
Sbjct: 239 AHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVF 279

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 39.0 bits (91), Expect = 2e-04
 Identities = 29/155 (18%), Positives = 56/155 (36%), Gaps = 22/155 (14%)

Query: 3   ELKNLFELNLKGNNVEGHLPNCLKYLS------HLKVFDISQNQ------------LSGS 44
           + K L   +L  N++   +               L++ D+S N             +S S
Sbjct: 172 QGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKS 231

Query: 45  LSSTITSLTSLEYLDLSYNNFEGPCPLSLLA-HHSKLEVLVLSSTIL--VKTENFLPTFQ 101
            + ++     +      ++N + P   +      S +  L LS   +  + +  F     
Sbjct: 232 QAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKD 291

Query: 102 LKELGLANCSLNVVP-TFLLHQYDLKYLDLSHNNL 135
           LK L LA   +N +         +L+ L+LS+N L
Sbjct: 292 LKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLL 326

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 56.6 bits (137), Expect = 1e-10
 Identities = 37/138 (26%), Positives = 57/138 (41%), Gaps = 7/138 (5%)

Query: 4   LKNLFELNLKGN--NVEGHLPNCLKYLSHLKVFDISQNQLSGSLSSTITSLTSLEYLDLS 61
           L +L  L+L  N  + +G         + LK  D+S N +  ++SS    L  LE+LD  
Sbjct: 346 LPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVI-TMSSNFLGLEQLEHLDFQ 404

Query: 62  YNNFEGPCPLSLLAHHSKLEVLVLSSTIL--VKTENFLPTFQLKELGLANCSL--NVVPT 117
           ++N +     S+      L  L +S T         F     L+ L +A  S   N +P 
Sbjct: 405 HSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPD 464

Query: 118 FLLHQYDLKYLDLSHNNL 135
                 +L +LDLS   L
Sbjct: 465 IFTELRNLTFLDLSQCQL 482

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 54.7 bits (132), Expect = 6e-10
 Identities = 31/139 (22%), Positives = 54/139 (38%), Gaps = 4/139 (2%)

Query: 1   LCELKNLFELNLKGNNVEGHLPNC-LKYLSHLKVFDISQNQLSGSLSSTITSLTSLEYLD 59
              L+ L  L+ + +N++          L +L   DIS      + +     L+SLE L 
Sbjct: 392 FLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLK 451

Query: 60  LSYNNFEGPCPLSLLAHHSKLEVLVLSSTILVKTEN--FLPTFQLKELGLANCSLNVVPT 117
           ++ N+F+      +      L  L LS   L +     F     L+ L +A+  L  VP 
Sbjct: 452 MAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPD 511

Query: 118 FLLHQ-YDLKYLDLSHNNL 135
            +  +   L+ + L  N  
Sbjct: 512 GIFDRLTSLQKIWLHTNPW 530

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 54.3 bits (131), Expect = 8e-10
 Identities = 29/138 (21%), Positives = 55/138 (39%), Gaps = 6/138 (4%)

Query: 4   LKNLFELNLKGNNVEGHLPNCLKYLSHLKVFDISQNQLSGSLSSTITSLTSLEYLDLSYN 63
           L +L  L L GN ++         LS L+     +  L+   +  I  L +L+ L++++N
Sbjct: 75  LSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHN 134

Query: 64  NFEGPCPLSLLAHHSKLEVLVLSSTIL--VKTENFLPTFQLK----ELGLANCSLNVVPT 117
             +        ++ + LE L LSS  +  +   +     Q+      L L+   +N +  
Sbjct: 135 LIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQP 194

Query: 118 FLLHQYDLKYLDLSHNNL 135
               +  L  L L +N  
Sbjct: 195 GAFKEIRLHKLTLRNNFD 212

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 50.1 bits (120), Expect = 3e-08
 Identities = 34/134 (25%), Positives = 56/134 (41%), Gaps = 5/134 (3%)

Query: 6   NLFELNLKGNNVEGHLPNCLKYLSHLKVFDISQNQLSGSLSSTITSLTSLEYLDLSYNNF 65
           +   L+L  N +             L+V D+S+ ++         SL+ L  L L+ N  
Sbjct: 29  STKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPI 88

Query: 66  EGPCPLSLLAHHSKLEVLVLSSTILVKTEN--FLPTFQLKELGLANCSLNVV--PTFLLH 121
           +    L   +  S L+ LV   T L   EN        LKEL +A+  +     P +  +
Sbjct: 89  QSL-ALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSN 147

Query: 122 QYDLKYLDLSHNNL 135
             +L++LDLS N +
Sbjct: 148 LTNLEHLDLSSNKI 161

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 49.3 bits (118), Expect = 5e-08
 Identities = 26/110 (23%), Positives = 43/110 (39%), Gaps = 4/110 (3%)

Query: 29  SHLKVFDISQNQLSGSLSSTITSLTSLEYLDLSYNNFEGPCPLSLLAHHSKLEVLVLSST 88
              K  D+S N L    S +  S   L+ LDLS    +           S L  L+L+  
Sbjct: 28  FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTI-EDGAYQSLSHLSTLILTGN 86

Query: 89  IL--VKTENFLPTFQLKELGLANCSLNVVPTFLLHQ-YDLKYLDLSHNNL 135
            +  +    F     L++L     +L  +  F +     LK L+++HN +
Sbjct: 87  PIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLI 136

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 47.0 bits (112), Expect = 3e-07
 Identities = 31/139 (22%), Positives = 56/139 (40%), Gaps = 11/139 (7%)

Query: 6   NLFELNLKGNNVEGHLP-NCLKYLSHLKVFDI------SQNQLSGSLSSTITSLTSL--E 56
            L +L L+ N    ++   C++ L+ L+V  +      ++  L     S +  L +L  E
Sbjct: 201 RLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIE 260

Query: 57  YLDLSYNNFEGPCPLSLLAHHSKLEVLVLSSTILVKTENFLPTFQLKELGLANCSLNVVP 116
              L+Y ++     + L    + +    L S  + + ++F   F  + L L NC     P
Sbjct: 261 EFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQFP 320

Query: 117 TFLLHQYDLKYLDLSHNNL 135
           T  L    LK L  + N  
Sbjct: 321 TLKLKS--LKRLTFTSNKG 337

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 45.1 bits (107), Expect = 1e-06
 Identities = 36/139 (25%), Positives = 56/139 (40%), Gaps = 12/139 (8%)

Query: 1   LCELKNLFELNLKGNNVEGHLPNCLKYLSHLKVFDISQNQLSGSLSSTITSLTSLEYLDL 60
               ++L  +N K           LK L        + N+   + S     L SLE+LDL
Sbjct: 303 NFGWQHLELVNCKFGQFPTLKLKSLKRL------TFTSNKGGNAFSEV--DLPSLEFLDL 354

Query: 61  SYNNFEG-PCPLSLLAHHSKLEVLVLSSTILVK-TENFLPTFQLKELGLANCSLNVVP-- 116
           S N      C        + L+ L LS   ++  + NFL   QL+ L   + +L  +   
Sbjct: 355 SRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEF 414

Query: 117 TFLLHQYDLKYLDLSHNNL 135
           +  L   +L YLD+SH + 
Sbjct: 415 SVFLSLRNLIYLDISHTHT 433

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 41.6 bits (98), Expect = 2e-05
 Identities = 23/71 (32%), Positives = 34/71 (47%)

Query: 1   LCELKNLFELNLKGNNVEGHLPNCLKYLSHLKVFDISQNQLSGSLSSTITSLTSLEYLDL 60
             EL+NL  L+L    +E   P     LS L+V +++ NQL          LTSL+ + L
Sbjct: 466 FTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWL 525

Query: 61  SYNNFEGPCPL 71
             N ++  CP 
Sbjct: 526 HTNPWDCSCPR 536

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 38.2 bits (89), Expect = 3e-04
 Identities = 29/155 (18%), Positives = 50/155 (32%), Gaps = 20/155 (12%)

Query: 1   LCELKNLFELNLKGNNVEGHLPNCLKYLSHLKVFDISQNQLSGSLS-STITSLTSLEYLD 59
           LC L          +     + +    L+++  F +    +      S       LE ++
Sbjct: 254 LCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLELVN 313

Query: 60  LSYNNFEGPCPLSL---------------LAHHSKLEVLVLS----STILVKTENFLPTF 100
             +  F      SL                     LE L LS    S     +++   T 
Sbjct: 314 CKFGQFPTLKLKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTT 373

Query: 101 QLKELGLANCSLNVVPTFLLHQYDLKYLDLSHNNL 135
            LK L L+   +  + +  L    L++LD  H+NL
Sbjct: 374 SLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNL 408

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 37.0 bits (86), Expect = 9e-04
 Identities = 26/148 (17%), Positives = 47/148 (31%), Gaps = 17/148 (11%)

Query: 4   LKNLFELNLKGNNVEGHLPNCLKYLSHLKVF----DISQNQLSGSLSSTITSLTSLEYLD 59
           L NL  L+L  N ++      L+ L  + +     D+S N ++  +         L  L 
Sbjct: 148 LTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMN-FIQPGAFKEIRLHKLT 206

Query: 60  LSYNNFEGPCPLSLLAHHSKLEVLVLSSTILVKTENF----------LPTFQLKELGLA- 108
           L  N        + +   + LEV  L         N           L    ++E  LA 
Sbjct: 207 LRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAY 266

Query: 109 -NCSLNVVPTFLLHQYDLKYLDLSHNNL 135
            +  L+ +        ++    L    +
Sbjct: 267 LDYYLDDIIDLFNCLTNVSSFSLVSVTI 294

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 56.2 bits (136), Expect = 2e-10
 Identities = 19/137 (13%), Positives = 48/137 (35%), Gaps = 6/137 (4%)

Query: 1   LCELKNLFELNLKGNNVEGHLPNCLKYLSHLKVFDISQNQLSGSLSSTITSLTSLEYLDL 60
             +  +L +  +  +  +  +    +            N ++  +S  +  LT L    +
Sbjct: 155 REDFSDLIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNNIT-FVSKAVMRLTKLRQFYM 213

Query: 61  SYNNFEGPCPLSLLAHHSKLEVLVLSSTILVKTENFLPTFQLKELGLANCSLN-VVPTFL 119
             + F           +   E      T  +K +N      L ++ + NC     +PTFL
Sbjct: 214 GNSPFVAENICEAW-ENENSEYAQQYKTEDLKWDNLK---DLTDVEVYNCPNLTKLPTFL 269

Query: 120 LHQYDLKYLDLSHNNLV 136
               +++ ++++ N  +
Sbjct: 270 KALPEMQLINVACNRGI 286

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 56.2 bits (136), Expect = 2e-10
 Identities = 25/145 (17%), Positives = 52/145 (35%), Gaps = 11/145 (7%)

Query: 1   LCELKNLFELNLKGNNVEGHLPNCLKYLSHLKVFDISQNQLSGSLSSTITSLTSLEYLDL 60
           L ++K L  L    N +EG           L   +++ NQ++   ++       +E L  
Sbjct: 326 LQKMKKLGMLECLYNQLEG-KLPAFGSEIKLASLNLAYNQITEIPANFCGFTEQVENLSF 384

Query: 61  SYNNFEGPCPLSLLAHHSKLEVLVLS----STILVKTENFLPTF-----QLKELGLANCS 111
           ++N  +    +      S +  +  S     ++  K  + L         +  + L+N  
Sbjct: 385 AHNKLKYIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQ 444

Query: 112 LNVVPTFLLHQ-YDLKYLDLSHNNL 135
           ++  P  L      L  ++L  N L
Sbjct: 445 ISKFPKELFSTGSPLSSINLMGNML 469

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 55.4 bits (134), Expect = 4e-10
 Identities = 28/150 (18%), Positives = 53/150 (35%), Gaps = 19/150 (12%)

Query: 1   LCELKNLFELNLKGNN--------VEGHLPNCLKYLSHLKVFDISQNQL-SGSLSSTITS 51
           L  L  +  +N+  N          +            +++  I  N L +  + +++  
Sbjct: 269 LKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLKTFPVETSLQK 328

Query: 52  LTSLEYLDLSYNNFEGPCPLSLLAHHSKLEVLVLS----STILVKTENFLPTFQLKELGL 107
           +  L  L+  YN  EG  P        KL  L L+    + I      F    Q++ L  
Sbjct: 329 MKKLGMLECLYNQLEGKLP--AFGSEIKLASLNLAYNQITEIPANFCGFTE--QVENLSF 384

Query: 108 ANCSLNVVPTFLLHQ--YDLKYLDLSHNNL 135
           A+  L  +P     +    +  +D S+N +
Sbjct: 385 AHNKLKYIPNIFDAKSVSVMSAIDFSYNEI 414

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 55.0 bits (133), Expect = 5e-10
 Identities = 21/149 (14%), Positives = 44/149 (29%), Gaps = 16/149 (10%)

Query: 1   LCELKNLFELNLKGNNVEG-------HLPNCLKYLSHLKVFDISQNQLSGSLSSTITSLT 53
              +  +  ++   N +          L        ++   ++S NQ+S       ++ +
Sbjct: 398 AKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGS 457

Query: 54  SLEYLDLSYNNFEG------PCPLSLLAHHSKLEVLVLSS---TILVKTENFLPTFQLKE 104
            L  ++L  N                  +   L  + L     T L           L  
Sbjct: 458 PLSSINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFNKLTKLSDDFRATTLPYLVG 517

Query: 105 LGLANCSLNVVPTFLLHQYDLKYLDLSHN 133
           + L+  S +  PT  L+   LK   + + 
Sbjct: 518 IDLSYNSFSKFPTQPLNSSTLKGFGIRNQ 546

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 54.3 bits (131), Expect = 9e-10
 Identities = 20/141 (14%), Positives = 52/141 (36%), Gaps = 7/141 (4%)

Query: 3   ELKNLFELNLKGNNVEGHLPNCLKYLSHLKVFDISQNQLSG----SLSSTITSLTSLEYL 58
               +  L+L+G    G +P+ +  L+ L+V  +  +             I++  S E  
Sbjct: 79  SNGRVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQK 138

Query: 59  DLSYNNFEGPCPLSL-LAHHSKLEVLVLSSTILVKT--ENFLPTFQLKELGLANCSLNVV 115
                +++            S L    ++S    K+  ++   T +  ++G  + ++  V
Sbjct: 139 QKMRMHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNNITFV 198

Query: 116 PTFLLHQYDLKYLDLSHNNLV 136
              ++    L+   + ++  V
Sbjct: 199 SKAVMRLTKLRQFYMGNSPFV 219

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 52.7 bits (127), Expect = 3e-09
 Identities = 15/142 (10%), Positives = 41/142 (28%), Gaps = 10/142 (7%)

Query: 4   LKNLFELNLKGNNVEGHLPNCLKYLSHLKVFDISQNQLSGSLSSTITSLTSLEYLDLSYN 63
            +     N +              L  L   ++        L + + +L  ++ ++++ N
Sbjct: 224 CEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACN 283

Query: 64  NFEGPCP-------LSLLAHHSKLEVLVLSS---TILVKTENFLPTFQLKELGLANCSLN 113
                         L+      K++++ +            +     +L  L      L 
Sbjct: 284 RGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLKTFPVETSLQKMKKLGMLECLYNQLE 343

Query: 114 VVPTFLLHQYDLKYLDLSHNNL 135
                   +  L  L+L++N +
Sbjct: 344 GKLPAFGSEIKLASLNLAYNQI 365

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 49.7 bits (119), Expect = 4e-08
 Identities = 29/141 (20%), Positives = 48/141 (34%), Gaps = 25/141 (17%)

Query: 4   LKNLFELNLKGNNVEGHLPN--CLKYLSHLKVFDISQNQLSG-------SLSSTITSLTS 54
            + +  L+   N ++  +PN    K +S +   D S N++          L  T     +
Sbjct: 376 TEQVENLSFAHNKLKY-IPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGIN 434

Query: 55  LEYLDLSYNNFEGPCPLSLLAHHSKLEVLVLSSTILVKTENFLPTFQLKELGLANCSLNV 114
           +  ++LS N      P  L +  S L  + L         N L         +   SL  
Sbjct: 435 VSSINLSNNQISKF-PKELFSTGSPLSSINLMG-------NMLT-------EIPKNSLKD 479

Query: 115 VPTFLLHQYDLKYLDLSHNNL 135
                 + Y L  +DL  N L
Sbjct: 480 ENENFKNTYLLTSIDLRFNKL 500

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 47.0 bits (112), Expect = 3e-07
 Identities = 19/93 (20%), Positives = 28/93 (30%), Gaps = 11/93 (11%)

Query: 1   LCELKNLFELNLKGNNVEGHLPNCLKYLSHLKVFDISQ------NQLSGSLSSTITSLTS 54
              L  L  ++L  N+     P      S LK F I        N+        IT   S
Sbjct: 509 ATTLPYLVGIDLSYNSFSK-FPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPS 567

Query: 55  LEYLDLSYNNFEGPCPLSLLAHHSKLEVLVLSS 87
           L  L +  N+        +      + VL +  
Sbjct: 568 LTQLQIGSNDIRKV-NEKIT---PNISVLDIKD 596

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 37.3 bits (87), Expect = 7e-04
 Identities = 17/148 (11%), Positives = 42/148 (28%), Gaps = 13/148 (8%)

Query: 1   LCELKNLFELNLKGNNVEG----HLPNCLKYLSHLKVFDISQNQLSGSLSSTIT--SLTS 54
           + +L  L  L L  +  +       P  +      +     +     +          + 
Sbjct: 101 IGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQKQKMRMHYQKTFVDYDPREDFSD 160

Query: 55  LEYLDLSYNNFEGPCPLSLLAHHSKLEVLVLSSTILVKTENFLPTFQLKELGLANCSLNV 114
           L    ++ +  +     S        ++  LS+ I   ++  +   +L++  + N     
Sbjct: 161 LIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNNITFVSKAVMRLTKLRQFYMGNSPFVA 220

Query: 115 VPTF-------LLHQYDLKYLDLSHNNL 135
                        +    K  DL  +NL
Sbjct: 221 ENICEAWENENSEYAQQYKTEDLKWDNL 248

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 55.6 bits (134), Expect = 3e-10
 Identities = 28/132 (21%), Positives = 55/132 (41%), Gaps = 8/132 (6%)

Query: 4   LKNLFELNLKGNNVEGHLPNCLKYLSHLKVFDISQNQLSGSLSSTITSLTSLEYLDLSYN 63
                   +  ++++  L +  +   ++K  D+S N LS   ++ +   T LE L+LS N
Sbjct: 9   GNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSN 68

Query: 64  NFEGPCPLSLLAHHSKLEVLVLSSTILVKTENFLPTFQLKELGLANCSLNVVPTFLLHQY 123
                  L  L   S L  L L++  +   +  L    ++ L  AN +++ V        
Sbjct: 69  VLYETLDLESL---STLRTLDLNNNYV---QELLVGPSIETLHAANNNISRVSCSRGQG- 121

Query: 124 DLKYLDLSHNNL 135
             K + L++N +
Sbjct: 122 -KKNIYLANNKI 132

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 55.6 bits (134), Expect = 3e-10
 Identities = 24/135 (17%), Positives = 52/135 (38%), Gaps = 3/135 (2%)

Query: 1   LCELKNLFELNLKGNNVEGHLPNCLKYLSHLKVFDISQNQLSGSLSSTITSLTSLEYLDL 60
           L    ++  L+   NN+     +  +   ++    ++ N+++          + ++YLDL
Sbjct: 95  LLVGPSIETLHAANNNISRVSCSRGQGKKNI---YLANNKITMLRDLDEGCRSRVQYLDL 151

Query: 61  SYNNFEGPCPLSLLAHHSKLEVLVLSSTILVKTENFLPTFQLKELGLANCSLNVVPTFLL 120
             N  +      L A    LE L L    +   +  +   +LK L L++  L  +     
Sbjct: 152 KLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVKGQVVFAKLKTLDLSSNKLAFMGPEFQ 211

Query: 121 HQYDLKYLDLSHNNL 135
               + ++ L +N L
Sbjct: 212 SAAGVTWISLRNNKL 226

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 51.4 bits (123), Expect = 9e-09
 Identities = 17/132 (12%), Positives = 40/132 (30%), Gaps = 4/132 (3%)

Query: 4   LKNLFELNLKGNNVEGHLPNCLKYLSHLKVFDISQNQLSGSLSSTITSLTSLEYLDLSYN 63
              L  L+L  N +   +    +  + +    +  N+L   +   +    +LE+ DL  N
Sbjct: 190 FAKLKTLDLSSNKLA-FMGPEFQSAAGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGN 247

Query: 64  NFEGPCPLSLLAHHSKLEVLVLSSTILVKTENFLPTFQLKELGLANCSLNVVPTFLLHQY 123
            F         + + +++ +   +   +  +N                   +P       
Sbjct: 248 GFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQNEEECTVPTLGHYGAYCCEDLPAPFAD-- 305

Query: 124 DLKYLDLSHNNL 135
            L  L    + L
Sbjct: 306 RLIALKRKEHAL 317

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 39.4 bits (92), Expect = 1e-04
 Identities = 26/139 (18%), Positives = 53/139 (38%), Gaps = 15/139 (10%)

Query: 1   LCELKNLFELNLKGNNVEGHLPNCLKYLSHLKVFDISQNQLSGSLSSTITSLTSLEYLDL 60
           L     L  LNL  N +   L   L+ LS L+  D++ N +       +    S+E L  
Sbjct: 54  LAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYV-----QELLVGPSIETLHA 106

Query: 61  SYNNFEGPCPLSLLAHHSKLEVLVLSSTIL--VKTENFLPTFQLKELGLANCSLNVVP-- 116
           + NN                + + L++  +  ++  +     +++ L L    ++ V   
Sbjct: 107 ANNNISRVSCSRG----QGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFA 162

Query: 117 TFLLHQYDLKYLDLSHNNL 135
                   L++L+L +N +
Sbjct: 163 ELAASSDTLEHLNLQYNFI 181

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 54.9 bits (132), Expect = 6e-10
 Identities = 29/136 (21%), Positives = 45/136 (33%), Gaps = 5/136 (3%)

Query: 4   LKNLFELNLKGNNVEGHLPNCLKYLSHLKVFDISQNQLSGSLSSTITSLTSLEYLDLSYN 63
             N+   N   +        C   +S     D S N L+ ++      LT LE L L  N
Sbjct: 299 FSNMNIKNFTVSGTRMVHMLCPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMN 358

Query: 64  NFEG-PCPLSLLAHHSKLEVLVLSSTILVKTEN---FLPTFQLKELGLANCSLNVVPTFL 119
             +       +      L+ L +S   +   E       T  L  L +++  L       
Sbjct: 359 QLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRC 418

Query: 120 LHQYDLKYLDLSHNNL 135
           L    +K LDL  N +
Sbjct: 419 LPP-RIKVLDLHSNKI 433

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 53.7 bits (129), Expect = 2e-09
 Identities = 29/134 (21%), Positives = 56/134 (41%), Gaps = 2/134 (1%)

Query: 4   LKNLFELNLKGNNVEGHLPNCLKYLSHLKVFDISQNQLS--GSLSSTITSLTSLEYLDLS 61
           +     L+   N +   +     +L+ L+   +  NQL     ++   T + SL+ LD+S
Sbjct: 323 ISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDIS 382

Query: 62  YNNFEGPCPLSLLAHHSKLEVLVLSSTILVKTENFLPTFQLKELGLANCSLNVVPTFLLH 121
            N+          +    L  L +SS IL  T       ++K L L +  +  +P  ++ 
Sbjct: 383 QNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCLPPRIKVLDLHSNKIKSIPKQVVK 442

Query: 122 QYDLKYLDLSHNNL 135
              L+ L+++ N L
Sbjct: 443 LEALQELNVASNQL 456

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 37.2 bits (86), Expect = 8e-04
 Identities = 22/138 (15%), Positives = 47/138 (34%), Gaps = 7/138 (5%)

Query: 4   LKNLFELNLKGNNVEGHLPNCLKYLSHLKVFDISQNQLSGSLSSTITSLTSLEYLDLSYN 63
           LK L    +  +          +  S++ + + + +          + ++   +LD S N
Sbjct: 275 LKALSIHQVVSDVFGFPQSYIYEIFSNMNIKNFTVSGTRMVHMLCPSKISPFLHLDFSNN 334

Query: 64  NFEGPCPLSLLAHHSKLEVLVLSSTILVKTENFLPTF----QLKELGLANCSLNVVPT-- 117
                       H ++LE L+L    L +             L++L ++  S++      
Sbjct: 335 LLTD-TVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKG 393

Query: 118 FLLHQYDLKYLDLSHNNL 135
                  L  L++S N L
Sbjct: 394 DCSWTKSLLSLNMSSNIL 411

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 53.7 bits (129), Expect = 1e-09
 Identities = 34/143 (23%), Positives = 51/143 (35%), Gaps = 9/143 (6%)

Query: 1   LCELKNLFELNLKGNNVEGHLP----NCLKYLSHLKVFDISQNQ---LSGSLSSTITSLT 53
           +     L  L+L  N   G        C      L+V  +        SG  S+   +  
Sbjct: 169 VRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARV 228

Query: 54  SLEYLDLSYNNFEGPCPLSLLAHHSKLEVLVLSSTILVKTENFLPTFQLKELGLANCSLN 113
            L+ LDLS+N+             S+L  L LS T L +    LP  +L  L L+   L+
Sbjct: 229 QLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLKQVPKGLPA-KLSVLDLSYNRLD 287

Query: 114 VVPTFLLHQYDLKYLDLSHNNLV 136
             P+       +  L L  N  +
Sbjct: 288 RNPSPDELPQ-VGNLSLKGNPFL 309

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 51.1 bits (122), Expect = 1e-08
 Identities = 32/143 (22%), Positives = 47/143 (32%), Gaps = 11/143 (7%)

Query: 2   CELKNLFELNLKGNNVEGHLPNCLKYLSHLKVFDISQNQLSGSLSSTIT----SLTSLEY 57
                L  L++   +        ++    L   D+S N   G              +L+ 
Sbjct: 146 WLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQV 205

Query: 58  LDLSYNNFE--GPCPLSLLAHHSKLEVLVLSS---TILVKTENFLPTFQLKELGLANCSL 112
           L L     E       +L A   +L+ L LS           +     QL  L L+   L
Sbjct: 206 LALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGL 265

Query: 113 NVVPTFLLHQYDLKYLDLSHNNL 135
             VP  L  +  L  LDLS+N L
Sbjct: 266 KQVPKGLPAK--LSVLDLSYNRL 286

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 53.4 bits (129), Expect = 2e-09
 Identities = 29/148 (19%), Positives = 52/148 (35%), Gaps = 19/148 (12%)

Query: 1   LCELKNLFELNLKGNNVEGHLPNCLKYLSHLKVFDISQNQLSGSLSSTITSLTSLEYLDL 60
              L +L  + +    +   LP+ ++  + L+   +++N L  +L ++I SL  L  L +
Sbjct: 100 AFRLSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLRELSI 157

Query: 61  SYNN--------FEGPCPLSLLAHHSKLEVLVLSSTILVKTENFLPT-----FQLKELGL 107
                                      L+ L L  T +      LP        LK L +
Sbjct: 158 RACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIRS----LPASIANLQNLKSLKI 213

Query: 108 ANCSLNVVPTFLLHQYDLKYLDLSHNNL 135
            N  L+ +   + H   L+ LDL     
Sbjct: 214 RNSPLSALGPAIHHLPKLEELDLRGCTA 241

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 49.9 bits (120), Expect = 2e-08
 Identities = 28/144 (19%), Positives = 47/144 (32%), Gaps = 13/144 (9%)

Query: 2   CELKNLFELNLKGNNVEGHLPNCLKYLSHLKVFDISQNQLSGSLSSTITSLTSLEYLDLS 61
                   L L+   +    P+    LSHL+   I    L   L  T+     LE L L+
Sbjct: 78  ATQPGRVALELRSVPLP-QFPDQAFRLSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLA 135

Query: 62  YNNFEGPCPLSL----------LAHHSKLEVLVLSSTILVKTENFLPTFQLKELGLANCS 111
            N      P S+          +    +L  L         +        L+ L L    
Sbjct: 136 RNPLRA-LPASIASLNRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTG 194

Query: 112 LNVVPTFLLHQYDLKYLDLSHNNL 135
           +  +P  + +  +LK L + ++ L
Sbjct: 195 IRSLPASIANLQNLKSLKIRNSPL 218

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 43.8 bits (104), Expect = 4e-06
 Identities = 21/100 (21%), Positives = 36/100 (36%), Gaps = 1/100 (1%)

Query: 1   LCELKNLFELNLKGNNVEGHLPNCLKYLSHLKVFDISQNQLSGSLSSTITSLTSLEYLDL 60
           +  L  L EL+L+G     + P      + LK   +       +L   I  LT LE LDL
Sbjct: 225 IHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDL 284

Query: 61  SYNNFEGPCPLSLLAHHSKLEVLVLSSTILVKTENFLPTF 100
                    P   +A      ++++   +  + +   P  
Sbjct: 285 RGCVNLSRLPSL-IAQLPANCIILVPPHLQAQLDQHRPVA 323

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 40.7 bits (96), Expect = 4e-05
 Identities = 11/64 (17%), Positives = 24/64 (37%), Gaps = 1/64 (1%)

Query: 1   LCELKNLFELNLKGNNVEGHLPNCLKYLSHLKVFDISQNQLSGSLSSTITSLTSLEYLDL 60
           +  L+NL  L ++ + +   L   + +L  L+  D+       +          L+ L L
Sbjct: 202 IANLQNLKSLKIRNSPLS-ALGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLIL 260

Query: 61  SYNN 64
              +
Sbjct: 261 KDCS 264

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 39.9 bits (94), Expect = 7e-05
 Identities = 34/147 (23%), Positives = 57/147 (38%), Gaps = 17/147 (11%)

Query: 1   LCELKNLFELNLKGNNVEGHLPNCL---------KYLSHLKVFDISQNQLSGSLSSTITS 51
           +  L  L EL+++       LP  L         + L +L+   +    +  SL ++I +
Sbjct: 146 IASLNRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIR-SLPASIAN 204

Query: 52  LTSLEYLDLSYNNFEG-PCPLSLLAHHSKLEVLVLSSTILVKT--ENFLPTFQLKELGLA 108
           L +L+ L +  +        +  L    KLE L L     ++     F     LK L L 
Sbjct: 205 LQNLKSLKIRNSPLSALGPAIHHL---PKLEELDLRGCTALRNYPPIFGGRAPLKRLILK 261

Query: 109 NCS-LNVVPTFLLHQYDLKYLDLSHNN 134
           +CS L  +P  +     L+ LDL    
Sbjct: 262 DCSNLLTLPLDIHRLTQLEKLDLRGCV 288

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 39.5 bits (93), Expect = 1e-04
 Identities = 19/138 (13%), Positives = 38/138 (27%), Gaps = 13/138 (9%)

Query: 4   LKNLFELNLKGNNVEGHLPNCLKYLSHLKVFDISQNQLSGSLSSTITSLTSLEYLDLSYN 63
                 L  +G+       + L         D ++   +        +  + +    +  
Sbjct: 11  SSGRENLYFQGSTALRPYHDVLSQWQRHYNADRNRWHSAWRQ----ANSNNPQIETRTGR 66

Query: 64  NFEGPCPLSLLAHHSKLEVLVLSSTILVKTENFLPTF-----QLKELGLANCSLNVVPTF 118
             +    L   A       L L S  L +     P        L+ + +    L  +P  
Sbjct: 67  ALKATADLLEDATQPGRVALELRSVPLPQ----FPDQAFRLSHLQHMTIDAAGLMELPDT 122

Query: 119 LLHQYDLKYLDLSHNNLV 136
           +     L+ L L+ N L 
Sbjct: 123 MQQFAGLETLTLARNPLR 140

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 38.0 bits (89), Expect = 3e-04
 Identities = 33/150 (22%), Positives = 54/150 (36%), Gaps = 24/150 (16%)

Query: 1   LCELKNLFELNLKGNNVEGHLPNCLKYLSHLKVFDIS-QNQL--------SGSLSSTITS 51
           + +   L  L L  N +   LP  +  L+ L+   I    +L        S   S     
Sbjct: 123 MQQFAGLETLTLARNPLR-ALPASIASLNRLRELSIRACPELTELPEPLASTDASGEHQG 181

Query: 52  LTSLEYLDLSYNNFEG-PCPLSLLAHHSKLEVLVLSSTILVKTENFLPT-----FQLKEL 105
           L +L+ L L +      P  ++ L     L+ L + ++ L      L        +L+EL
Sbjct: 182 LVNLQSLRLEWTGIRSLPASIANL---QNLKSLKIRNSPLSA----LGPAIHHLPKLEEL 234

Query: 106 GLANCS-LNVVPTFLLHQYDLKYLDLSHNN 134
            L  C+ L   P     +  LK L L   +
Sbjct: 235 DLRGCTALRNYPPIFGGRAPLKRLILKDCS 264

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 52.7 bits (127), Expect = 3e-09
 Identities = 40/135 (29%), Positives = 56/135 (41%), Gaps = 8/135 (5%)

Query: 1   LCELKNLFELNLKGNNVEGHLPNCLKYLSHLKVFDISQNQLSGSLSSTITSLTSLEYLDL 60
           L +L NL  L    N +    P  L  L++L    ++ NQL      T+ SLT+L  LDL
Sbjct: 195 LAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLKDI--GTLASLTNLTDLDL 250

Query: 61  SYNNFEGPCPLSLLAHHSKLEVLVLSSTILVKTENFLPTFQLKELGLANCSLNVVPTFLL 120
           + N      PLS L   +KL  L L +  +           L  L L    L  +     
Sbjct: 251 ANNQISNLAPLSGL---TKLTELKLGANQISNISPLAGLTALTNLELNENQLEDISPISN 307

Query: 121 HQYDLKYLDLSHNNL 135
            + +L YL L  NN+
Sbjct: 308 LK-NLTYLTLYFNNI 321

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 51.9 bits (125), Expect = 5e-09
 Identities = 32/135 (23%), Positives = 57/135 (42%), Gaps = 8/135 (5%)

Query: 1   LCELKNLFELNLKGNNVEGHLPNCLKYLSHLKVFDISQNQLSGSLSSTITSLTSLEYLDL 60
           L  L  L EL L  N +     + L  L+ L   ++++NQL     S I++L +L YL L
Sbjct: 261 LSGLTKLTELKLGANQISN--ISPLAGLTALTNLELNENQLEDI--SPISNLKNLTYLTL 316

Query: 61  SYNNFEGPCPLSLLAHHSKLEVLVLSSTILVKTENFLPTFQLKELGLANCSLNVVPTFLL 120
            +NN     P+S L   +KL+ L   +  +    +      +  L   +  ++ +   L 
Sbjct: 317 YFNNISDISPVSSL---TKLQRLFFYNNKVSDVSSLANLTNINWLSAGHNQISDLTP-LA 372

Query: 121 HQYDLKYLDLSHNNL 135
           +   +  L L+    
Sbjct: 373 NLTRITQLGLNDQAW 387

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 51.9 bits (125), Expect = 6e-09
 Identities = 25/133 (18%), Positives = 55/133 (41%), Gaps = 8/133 (6%)

Query: 1   LCELKNLFELNLKGNNVEGHLPNCLKYLSHLKVFDISQNQLSGSLSSTITSLTSLEYLDL 60
             +L  +  L      ++    + ++YL++L   + S NQL+    + + +LT L  + +
Sbjct: 42  QTDLDQVTTLQADRLGIKS--IDGVEYLNNLTQINFSNNQLTDI--TPLKNLTKLVDILM 97

Query: 61  SYNNFEGPCPLSLLAHHSKLEVLVLSSTILVKTENFLPTFQLKELGLANCSLNVVPTFLL 120
           + N      PL+ L   + L  L L +  +   +       L  L L++ +++ +   L 
Sbjct: 98  NNNQIADITPLANL---TNLTGLTLFNNQITDIDPLKNLTNLNRLELSSNTISDISA-LS 153

Query: 121 HQYDLKYLDLSHN 133
               L+ L   + 
Sbjct: 154 GLTSLQQLSFGNQ 166

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 51.5 bits (124), Expect = 8e-09
 Identities = 40/135 (29%), Positives = 59/135 (43%), Gaps = 9/135 (6%)

Query: 1   LCELKNLFELNLKGNNVEGHLPNCLKYLSHLKVFDISQNQLSGSLSSTITSLTSLEYLDL 60
           L  L +L +L+  GN V    P  L  L+ L+  DIS N++S    S +  LT+LE L  
Sbjct: 152 LSGLTSLQQLSF-GNQVTDLKP--LANLTTLERLDISSNKVSDI--SVLAKLTNLESLIA 206

Query: 61  SYNNFEGPCPLSLLAHHSKLEVLVLSSTILVKTENFLPTFQLKELGLANCSLNVVPTFLL 120
           + N      PL +L   + L+ L L+   L           L +L LAN  ++ +   L 
Sbjct: 207 TNNQISDITPLGIL---TNLDELSLNGNQLKDIGTLASLTNLTDLDLANNQISNLAP-LS 262

Query: 121 HQYDLKYLDLSHNNL 135
               L  L L  N +
Sbjct: 263 GLTKLTELKLGANQI 277

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 50.3 bits (121), Expect = 2e-08
 Identities = 25/135 (18%), Positives = 45/135 (33%), Gaps = 7/135 (5%)

Query: 1   LCELKNLFELNLKGNNVEGHLPNCLKYLSHLKVFDISQNQLSGSLSSTITSLTSLEYLDL 60
           L  L  L  L L  N +E    + +  L +L    +  N +S    S ++SLT L+ L  
Sbjct: 283 LAGLTALTNLELNENQLED--ISPISNLKNLTYLTLYFNNISDI--SPVSSLTKLQRLFF 338

Query: 61  SYNNFEGPCPLSLLAHHSKLEVLVLSSTILVKTENFLPTFQLKELGLANCSLNVVPTFLL 120
             N       L+ L   + +  L      +          ++ +LGL + +    P    
Sbjct: 339 YNNKVSDVSSLANL---TNINWLSAGHNQISDLTPLANLTRITQLGLNDQAWTNAPVNYK 395

Query: 121 HQYDLKYLDLSHNNL 135
               +     +    
Sbjct: 396 ANVSIPNTVKNVTGA 410

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 49.6 bits (119), Expect = 4e-08
 Identities = 27/136 (19%), Positives = 52/136 (38%), Gaps = 8/136 (5%)

Query: 1   LCELKNLFELNLKGNNVEGHLPNCLKYLSHLKVFDISQNQLSGSLSSTITSLTSLEYLDL 60
           +  LKNL  L L  NN+    P  +  L+ L+      N++S    S++ +LT++ +L  
Sbjct: 305 ISNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFYNNKVSDV--SSLANLTNINWLSA 360

Query: 61  SYNNFEGPCPLSLLAHHSKLEVLVLSS-TILVKTENFLPTFQLKELGLANCSLNVVPTFL 119
            +N      PL+ L   +++  L L+         N+     +           + P  +
Sbjct: 361 GHNQISDLTPLANL---TRITQLGLNDQAWTNAPVNYKANVSIPNTVKNVTGALIAPATI 417

Query: 120 LHQYDLKYLDLSHNNL 135
                    D++ N  
Sbjct: 418 SDGGSYTEPDITWNLP 433

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 48.4 bits (116), Expect = 9e-08
 Identities = 25/132 (18%), Positives = 48/132 (36%), Gaps = 8/132 (6%)

Query: 4   LKNLFELNLKGNNVEGHLPNCLKYLSHLKVFDISQNQLSGSLSSTITSLTSLEYLDLSYN 63
           L    +  L   NV   +      L  +      +  +  S+   +  L +L  ++ S N
Sbjct: 23  LAEKMKTVLGKTNVTDTVS--QTDLDQVTTLQADRLGIK-SIDG-VEYLNNLTQINFSNN 78

Query: 64  NFEGPCPLSLLAHHSKLEVLVLSSTILVKTENFLPTFQLKELGLANCSLNVVPTFLLHQY 123
                 PL  L   +KL  +++++  +           L  L L N  +  +   L +  
Sbjct: 79  QLTDITPLKNL---TKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITDIDP-LKNLT 134

Query: 124 DLKYLDLSHNNL 135
           +L  L+LS N +
Sbjct: 135 NLNRLELSSNTI 146

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 48.4 bits (116), Expect = 1e-07
 Identities = 28/135 (20%), Positives = 58/135 (42%), Gaps = 9/135 (6%)

Query: 1   LCELKNLFELNLKGNNVEGHLPNCLKYLSHLKVFDISQNQLSGSLSSTITSLTSLEYLDL 60
           L  L  L ++ +  N +    P  L  L++L    +  NQ++      + +LT+L  L+L
Sbjct: 86  LKNLTKLVDILMNNNQIADITP--LANLTNLTGLTLFNNQITDI--DPLKNLTNLNRLEL 141

Query: 61  SYNNFEGPCPLSLLAHHSKLEVLVLSSTILVKTENFLPTFQLKELGLANCSLNVVPTFLL 120
           S N       LS L   + L+ L   + +    +       L+ L +++  ++ +   L 
Sbjct: 142 SSNTISDISALSGL---TSLQQLSFGNQVT-DLKPLANLTTLERLDISSNKVSDIS-VLA 196

Query: 121 HQYDLKYLDLSHNNL 135
              +L+ L  ++N +
Sbjct: 197 KLTNLESLIATNNQI 211

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 43.0 bits (102), Expect = 8e-06
 Identities = 15/111 (13%), Positives = 38/111 (34%), Gaps = 6/111 (5%)

Query: 25  LKYLSHLKVFDISQNQLSGSLSSTITSLTSLEYLDLSYNNFEGPCPLSLLAHHSKLEVLV 84
              L+      + +  ++ +   + T L  +  L       +    +  L   + L  + 
Sbjct: 20  DTALAEKMKTVLGKTNVTDT--VSQTDLDQVTTLQADRLGIKSIDGVEYL---NNLTQIN 74

Query: 85  LSSTILVKTENFLPTFQLKELGLANCSLNVVPTFLLHQYDLKYLDLSHNNL 135
            S+  L          +L ++ + N  +  +   L +  +L  L L +N +
Sbjct: 75  FSNNQLTDITPLKNLTKLVDILMNNNQIADIT-PLANLTNLTGLTLFNNQI 124

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 51.5 bits (124), Expect = 4e-09
 Identities = 25/136 (18%), Positives = 52/136 (38%), Gaps = 5/136 (3%)

Query: 1   LCELKNLFELNLKGNNVEGHLPNCLKYLSHLKVFDISQNQLSGSLSSTITSLTSLEYLDL 60
           +    N+ +L +   +      N +  LS+L+   I    ++      ++ LTSL  LD+
Sbjct: 62  IEYAHNIKDLTINNIHATN--YNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDI 119

Query: 61  SYNNFEGPCPLSLLAHHSKLEVLVLSSTILVKTENFLPTF-QLKELGLANCSLNVVPTFL 119
           S++  +    L+ +    K+  + LS    +     L T  +LK L +    ++     +
Sbjct: 120 SHSAHDDS-ILTKINTLPKVNSIDLSYNGAITDIMPLKTLPELKSLNIQFDGVHDY-RGI 177

Query: 120 LHQYDLKYLDLSHNNL 135
                L  L      +
Sbjct: 178 EDFPKLNQLYAFSQTI 193

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 38.4 bits (90), Expect = 2e-04
 Identities = 20/112 (17%), Positives = 47/112 (41%), Gaps = 8/112 (7%)

Query: 28  LSHLKVFDISQNQLSGSLSSTITSLTSLEYLDLSYNNFEGPCPLSLLAHHSKLEVLVLSS 87
           ++ L    ++   ++  L+  I    +++ L ++  +     P+S L   S LE L +  
Sbjct: 43  MNSLTYITLANINVT-DLTG-IEYAHNIKDLTINNIHATNYNPISGL---SNLERLRIMG 97

Query: 88  TIL--VKTENFLPTFQLKELGLANCSL-NVVPTFLLHQYDLKYLDLSHNNLV 136
             +   K  N      L  L +++ +  + + T +     +  +DLS+N  +
Sbjct: 98  KDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAI 149

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 50.8 bits (122), Expect = 1e-08
 Identities = 29/133 (21%), Positives = 48/133 (36%), Gaps = 3/133 (2%)

Query: 6   NLFELNLKGNNVEGHLPNCLKYLSHLKVFDISQNQLSGSLSSTITSLTSLEYLDLSYNNF 65
               + L GN +        +   +L +  +  N L+   ++  T L  LE LDLS N  
Sbjct: 33  ASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQ 92

Query: 66  EGPCPLSLLAHHSKLEVLVLSSTIL--VKTENFLPTFQLKELGLANCSLNVVPTFLL-HQ 122
                 +      +L  L L    L  +    F     L+ L L + +L  +P       
Sbjct: 93  LRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDL 152

Query: 123 YDLKYLDLSHNNL 135
            +L +L L  N +
Sbjct: 153 GNLTHLFLHGNRI 165

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 49.6 bits (119), Expect = 4e-08
 Identities = 30/136 (22%), Positives = 40/136 (29%), Gaps = 5/136 (3%)

Query: 4   LKNLFELNLKGNNVEGHLP-NCLKYLSHLKVFDISQNQLSGSLSSTITSLTSLEYLDLSY 62
           L  L +L+L  N     +       L  L    + +  L          L +L+YL L  
Sbjct: 79  LALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQD 138

Query: 63  NNFEGPCPLSLLAHHSKLEVLVLSSTIL--VKTENFLPTFQLKELGLANCSLNVVPTFLL 120
           N  +   P         L  L L    +  V    F     L  L L    +  V     
Sbjct: 139 NALQA-LPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAF 197

Query: 121 HQ-YDLKYLDLSHNNL 135
                L  L L  NNL
Sbjct: 198 RDLGRLMTLYLFANNL 213

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 48.1 bits (115), Expect = 1e-07
 Identities = 31/136 (22%), Positives = 46/136 (33%), Gaps = 5/136 (3%)

Query: 4   LKNLFELNLKGNNVEGHLPNCLKYLSHLKVFDISQNQLSGSLSS-TITSLTSLEYLDLSY 62
            +NL  L L  N +          L+ L+  D+S N    S+   T   L  L  L L  
Sbjct: 55  CRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDR 114

Query: 63  NNFEGPCPLSLLAHHSKLEVLVLSSTIL--VKTENFLPTFQLKELGLANCSLNVVPTFLL 120
              +      L    + L+ L L    L  +  + F     L  L L    ++ VP    
Sbjct: 115 CGLQE-LGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAF 173

Query: 121 -HQYDLKYLDLSHNNL 135
              + L  L L  N +
Sbjct: 174 RGLHSLDRLLLHQNRV 189

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 39.6 bits (93), Expect = 1e-04
 Identities = 24/111 (21%), Positives = 42/111 (37%), Gaps = 5/111 (4%)

Query: 29  SHLKVFDISQNQLSGSLSSTITSLTSLEYLDLSYNNFEGPCPLSLLAHHSKLEVLVLSST 88
           +  +   +  N++S   +++  +  +L  L L  N        +     + LE L LS  
Sbjct: 32  AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARI-DAAAFTGLALLEQLDLSDN 90

Query: 89  ILVKT---ENFLPTFQLKELGLANCSLNVVPTFLLHQ-YDLKYLDLSHNNL 135
             +++     F    +L  L L  C L  +   L      L+YL L  N L
Sbjct: 91  AQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNAL 141

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 39.6 bits (93), Expect = 1e-04
 Identities = 23/84 (27%), Positives = 31/84 (36%), Gaps = 1/84 (1%)

Query: 4   LKNLFELNLKGNNVEGHLPNCLKYLSHLKVFDISQNQLSGSLSSTITSLTSLEYLDLSYN 63
           L NL  L L GN +        + L  L    + QN+++         L  L  L L  N
Sbjct: 152 LGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFAN 211

Query: 64  NFEGPCPLSLLAHHSKLEVLVLSS 87
           N     P   LA    L+ L L+ 
Sbjct: 212 NLSA-LPTEALAPLRALQYLRLND 234

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 38.8 bits (91), Expect = 2e-04
 Identities = 25/108 (23%), Positives = 40/108 (37%), Gaps = 3/108 (2%)

Query: 4   LKNLFELNLKGNNVEGHLPNCLKYLSHLKVFDISQNQLSGSLSSTITSLTSLEYLDLSYN 63
           L  L  L L+ N ++    +  + L +L    +  N++S         L SL+ L L  N
Sbjct: 128 LAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQN 187

Query: 64  NFEGPCPLSLLAHHSKLEVLVLSSTIL--VKTENFLPTFQLKELGLAN 109
                          +L  L L +  L  + TE   P   L+ L L +
Sbjct: 188 RVAH-VHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLND 234

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 50.7 bits (121), Expect = 2e-08
 Identities = 33/135 (24%), Positives = 52/135 (38%), Gaps = 19/135 (14%)

Query: 2   CELKNLFELNLKGNNVEGHLPNCLKYLSHLKVFDISQNQLSGSLSSTITSLTSLEYLDLS 61
           C       LN+  + +   LP+CL   +H+    I  N L+ SL +    L +   L++S
Sbjct: 37  CLNNGNAVLNVGESGLT-TLPDCL--PAHITTLVIPDNNLT-SLPALPPELRT---LEVS 89

Query: 62  YNNFEG-PCPLSLLAHHSKLEVLVLSSTILVKTENFLPTFQLKELGLANCSLNVVPTFLL 120
            N     P     L    +L +     T L      LP+  L +L +    L  +P    
Sbjct: 90  GNQLTSLPVLPPGL---LELSIFSNPLTHLPA----LPS-GLCKLWIFGNQLTSLPVLPP 141

Query: 121 HQYDLKYLDLSHNNL 135
               L+ L +S N L
Sbjct: 142 G---LQELSVSDNQL 153

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 49.1 bits (117), Expect = 6e-08
 Identities = 29/132 (21%), Positives = 46/132 (34%), Gaps = 18/132 (13%)

Query: 4   LKNLFELNLKGNNVEGHLPNCLKYLSHLKVFDISQNQLSGSLSSTITSLTSLEYLDLSYN 63
             ++  L +  NN+   LP        L+  ++S NQL+ SL      L  L        
Sbjct: 60  PAHITTLVIPDNNLT-SLPALP---PELRTLEVSGNQLT-SLPVLPPGLLELSIFSNPLT 114

Query: 64  NFEGPCPLSLLAHHSKLEVLVLSSTILVKTENFLPTFQLKELGLANCSLNVVPTFLLHQY 123
           +       +L    S L  L +    L       P   L+EL +++  L  +P       
Sbjct: 115 HLP-----ALP---SGLCKLWIFGNQLTSLPVLPP--GLQELSVSDNQLASLPALPSE-- 162

Query: 124 DLKYLDLSHNNL 135
            L  L   +N L
Sbjct: 163 -LCKLWAYNNQL 173

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 45.3 bits (107), Expect = 1e-06
 Identities = 32/133 (24%), Positives = 50/133 (37%), Gaps = 15/133 (11%)

Query: 3   ELKNLFELNLKGNNVEGHLPNCLKYLSHLKVFDISQNQLSGSLSSTITSLTSLEYLDLSY 62
               L EL++  N +   LP     L  L       N+L+ SL +     + L+ L +S 
Sbjct: 179 LPSGLQELSVSDNQLA-SLPTLPSELYKL---WAYNNRLT-SLPA---LPSGLKELIVSG 230

Query: 63  NNFEGPCPLSLLAHHSKLEVLVLSSTILVKTENFLPTFQLKELGLANCSLNVVPTFLLHQ 122
           N        SL    S+L+ L++S   L           L  L +    L  +P  L+H 
Sbjct: 231 NRLT-----SLPVLPSELKELMVSGNRLTSLPMLPS--GLLSLSVYRNQLTRLPESLIHL 283

Query: 123 YDLKYLDLSHNNL 135
                ++L  N L
Sbjct: 284 SSETTVNLEGNPL 296

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 44.9 bits (106), Expect = 2e-06
 Identities = 35/133 (26%), Positives = 47/133 (35%), Gaps = 18/133 (13%)

Query: 3   ELKNLFELNLKGNNVEGHLPNCLKYLSHLKVFDISQNQLSGSLSSTITSLTSLEYLDLSY 62
               L EL++  N +   LP     L  L       NQL+ SL    + L  L    +S 
Sbjct: 139 LPPGLQELSVSDNQLA-SLPALPSELCKL---WAYNNQLT-SLPMLPSGLQEL---SVSD 190

Query: 63  NNFEGPCPLSLLAHHSKLEVLVLSSTILVKTENFLPTFQLKELGLANCSLNVVPTFLLHQ 122
           N        SL    S+L  L   +  L           LKEL ++   L  +P      
Sbjct: 191 NQLA-----SLPTLPSELYKLWAYNNRLTSLPALPS--GLKELIVSGNRLTSLPVLPSE- 242

Query: 123 YDLKYLDLSHNNL 135
             LK L +S N L
Sbjct: 243 --LKELMVSGNRL 253

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 40.3 bits (94), Expect = 7e-05
 Identities = 34/135 (25%), Positives = 46/135 (34%), Gaps = 21/135 (15%)

Query: 1   LCELKNLFELNLKGNNVEGHLPNCLKYLSHLKVFDISQNQLSGSLSSTITSLTSLEYLDL 60
              L  L   +        HLP     L  L    I  NQL+ SL         L+ L +
Sbjct: 100 PPGLLELSIFSNPLT----HLPALPSGLCKL---WIFGNQLT-SLPV---LPPGLQELSV 148

Query: 61  SYNNFEGPCPLSLLAHHSKLEVLVLSSTILVKTENFLPTFQLKELGLANCSLNVVPTFLL 120
           S N        SL A  S+L  L   +  L           L+EL +++  L  +PT   
Sbjct: 149 SDNQLA-----SLPALPSELCKLWAYNNQLTSLPMLPS--GLQELSVSDNQLASLPTLPS 201

Query: 121 HQYDLKYLDLSHNNL 135
               L  L   +N L
Sbjct: 202 E---LYKLWAYNNRL 213

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 50.7 bits (121), Expect = 2e-08
 Identities = 35/132 (26%), Positives = 52/132 (39%), Gaps = 9/132 (6%)

Query: 4   LKNLFELNLKGNNVEGHLPNCLKYLSHLKVFDISQNQLSGSLSSTITSLTSLEYLDLSYN 63
           +  L  L L+ N++             L    +S N L      T  + TSL+ L LS N
Sbjct: 122 VPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSN 181

Query: 64  NFEGPCPLSLLAHHSKLEVLVLSSTILVKTENFLPTFQLKELGLANCSLNVVPTFLLHQY 123
                  LSL+     L    +S  +L           ++EL  ++ S+NVV   +  + 
Sbjct: 182 RLTH-VDLSLI---PSLFHANVSYNLL---STLAIPIAVEELDASHNSINVVRGPVNVE- 233

Query: 124 DLKYLDLSHNNL 135
            L  L L HNNL
Sbjct: 234 -LTILKLQHNNL 244

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 48.8 bits (116), Expect = 7e-08
 Identities = 26/135 (19%), Positives = 51/135 (37%), Gaps = 4/135 (2%)

Query: 4   LKNLFELNLKGNNVEGHLPNCLKYLSHLKVFDISQNQLSGSLSSTITSLTSLEYLDLSYN 63
           L N   +  K + +       L     +++ +++  Q+    +       +++ L + +N
Sbjct: 50  LNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFN 109

Query: 64  NFEGPCPLSLLAHHSKLEVLVLSSTIL--VKTENFLPTFQLKELGLANCSLNVVPTFLLH 121
                 P  +  +   L VLVL    L  +    F  T +L  L ++N +L  +      
Sbjct: 110 AIRY-LPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQ 168

Query: 122 Q-YDLKYLDLSHNNL 135
               L+ L LS N L
Sbjct: 169 ATTSLQNLQLSSNRL 183

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 46.5 bits (110), Expect = 5e-07
 Identities = 33/136 (24%), Positives = 53/136 (38%), Gaps = 7/136 (5%)

Query: 1   LCELKNLFELNLKGNNVEGHLPNCLKYLSHLKVFDISQNQLSGSLSSTITSLTSLEYLDL 60
           L     + EL+   N++          L+ L    +  N L+   ++ + +   L  +DL
Sbjct: 207 LAIPIAVEELDASHNSINVVRGPVNVELTIL---KLQHNNLTD--TAWLLNYPGLVEVDL 261

Query: 61  SYNNFEGPCPLSLLAHHSKLEVLVLSSTILVK-TENFLPTFQLKELGLANCSLNVVPTFL 119
           SYN  E            +LE L +S+  LV       P   LK L L++  L  V    
Sbjct: 262 SYNELEKI-MYHPFVKMQRLERLYISNNRLVALNLYGQPIPTLKVLDLSHNHLLHVERNQ 320

Query: 120 LHQYDLKYLDLSHNNL 135
                L+ L L HN++
Sbjct: 321 PQFDRLENLYLDHNSI 336

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 45.7 bits (108), Expect = 1e-06
 Identities = 22/132 (16%), Positives = 51/132 (38%), Gaps = 4/132 (3%)

Query: 7   LFELNLKGNNVEGHLPNCLKYLSHLKVFDISQNQLSGSLSSTITSLTSLEYLDLSYNNFE 66
            +++++     + +       L++ K+     + +    ++ + S   +E L+L+    E
Sbjct: 29  FYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIE 88

Query: 67  GPCPLSLLAHHSKLEVLVLSSTIL--VKTENFLPTFQLKELGLANCSLNVVPTFLLHQ-Y 123
                   A+   ++ L +    +  +    F     L  L L    L+ +P  + H   
Sbjct: 89  E-IDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTP 147

Query: 124 DLKYLDLSHNNL 135
            L  L +S+NNL
Sbjct: 148 KLTTLSMSNNNL 159

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 41.8 bits (98), Expect = 2e-05
 Identities = 37/134 (27%), Positives = 53/134 (39%), Gaps = 9/134 (6%)

Query: 4   LKNLFELNLKGNNVEGHLPNCLKYLSHLKVFDISQNQLSGSLSSTITSLTSLEYLDLSYN 63
              L  L L+ NN+       L     L   D+S N+L   +      +  LE L +S N
Sbjct: 231 NVELTILKLQHNNLT-DTAW-LLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNN 288

Query: 64  NFEG-PCPLSLLAHHSKLEVLVLSSTILVKTENFLPTF-QLKELGLANCSLNVVPTFLLH 121
                      +     L+VL LS   L+  E   P F +L+ L L + S+  +     H
Sbjct: 289 RLVALNLYGQPI---PTLKVLDLSHNHLLHVERNQPQFDRLENLYLDHNSIVTLKLSTHH 345

Query: 122 QYDLKYLDLSHNNL 135
              LK L LSHN+ 
Sbjct: 346 T--LKNLTLSHNDW 357

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 39.5 bits (92), Expect = 1e-04
 Identities = 19/118 (16%), Positives = 43/118 (36%), Gaps = 4/118 (3%)

Query: 21  LPNCLKYLSHLKVFDISQNQLSGSLSSTITSLTSLEYLDLSYNNFEGPCPLSLLAHHSKL 80
           + + L+Y        I              +L + + +    +      P +LL    ++
Sbjct: 19  IDSNLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRK-LPAALLDSFRQV 77

Query: 81  EVLVLSSTIL--VKTENFLPTFQLKELGLANCSLNVVPTFLLHQ-YDLKYLDLSHNNL 135
           E+L L+   +  + T  F     +++L +   ++  +P  +      L  L L  N+L
Sbjct: 78  ELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDL 135

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 50.4 bits (121), Expect = 2e-08
 Identities = 26/135 (19%), Positives = 51/135 (37%), Gaps = 4/135 (2%)

Query: 4   LKNLFELNLKGNNVEGHLPNCLKYLSHLKVFDISQNQLSGSLSSTITSLTSLEYLDLSYN 63
           L N   +  K + +       L     +++ +++  Q+    +       +++ L + +N
Sbjct: 44  LNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFN 103

Query: 64  NFEGPCPLSLLAHHSKLEVLVLSSTIL--VKTENFLPTFQLKELGLANCSLNVVPTFLLH 121
                 P  +  +   L VLVL    L  +    F  T +L  L ++N +L  +      
Sbjct: 104 AIRY-LPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQ 162

Query: 122 Q-YDLKYLDLSHNNL 135
               L+ L LS N L
Sbjct: 163 ATTSLQNLQLSSNRL 177

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 47.7 bits (114), Expect = 2e-07
 Identities = 32/134 (23%), Positives = 56/134 (41%), Gaps = 13/134 (9%)

Query: 4   LKNLFELNLKGNNVEGHLPNCLKYLSHLKVFDISQNQLSGSLSSTITSLTSLEYLDLSYN 63
           + +LF  N+  N +       L     ++  D S N ++  +   +     L  L L +N
Sbjct: 185 IPSLFHANVSYNLLST-----LAIPIAVEELDASHNSIN-VVRGPV--NVELTILKLQHN 236

Query: 64  NFEGPCPLSLLAHHSKLEVLVLSSTIL--VKTENFLPTFQLKELGLANCSLNVVPTFLLH 121
           N       + L ++  L  + LS   L  +    F+   +L+ L ++N  L  +  +   
Sbjct: 237 NLT---DTAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVALNLYGQP 293

Query: 122 QYDLKYLDLSHNNL 135
              LK LDLSHN+L
Sbjct: 294 IPTLKVLDLSHNHL 307

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 47.3 bits (113), Expect = 2e-07
 Identities = 28/135 (20%), Positives = 50/135 (37%), Gaps = 6/135 (4%)

Query: 1   LCELKNLFELNLKGNNVEGHLPNCLKYLSHLKVFDISQNQLSGSLSSTITSLTSLEYLDL 60
                 + +L +  N +    P+  + +  L V  + +N LS        +   L  L +
Sbjct: 89  FAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSM 148

Query: 61  SYNNFEGPCPLSLLAHHSKLEVLVLSSTILVKTENFLPTFQLKELGLANCSLNVVPTFLL 120
           S NN E           + L+ L LSS  L   +  L    L    ++   L+ +     
Sbjct: 149 SNNNLER-IEDDTFQATTSLQNLQLSSNRLTHVDLSLIP-SLFHANVSYNLLSTLAI--- 203

Query: 121 HQYDLKYLDLSHNNL 135
               ++ LD SHN++
Sbjct: 204 -PIAVEELDASHNSI 217

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 47.0 bits (112), Expect = 3e-07
 Identities = 22/132 (16%), Positives = 51/132 (38%), Gaps = 4/132 (3%)

Query: 7   LFELNLKGNNVEGHLPNCLKYLSHLKVFDISQNQLSGSLSSTITSLTSLEYLDLSYNNFE 66
            +++++     + +       L++ K+     + +    ++ + S   +E L+L+    E
Sbjct: 23  FYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIE 82

Query: 67  GPCPLSLLAHHSKLEVLVLSSTIL--VKTENFLPTFQLKELGLANCSLNVVPTFLLHQ-Y 123
                   A+   ++ L +    +  +    F     L  L L    L+ +P  + H   
Sbjct: 83  E-IDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTP 141

Query: 124 DLKYLDLSHNNL 135
            L  L +S+NNL
Sbjct: 142 KLTTLSMSNNNL 153

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 43.1 bits (102), Expect = 6e-06
 Identities = 35/134 (26%), Positives = 51/134 (38%), Gaps = 9/134 (6%)

Query: 4   LKNLFELNLKGNNVEGHLPNCLKYLSHLKVFDISQNQLSGSLSSTITSLTSLEYLDLSYN 63
              L  L L+ NN+       L     L   D+S N+L   +      +  LE L +S N
Sbjct: 225 NVELTILKLQHNNLT-DTAW-LLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNN 282

Query: 64  NFEG-PCPLSLLAHHSKLEVLVLSSTILVK-TENFLPTFQLKELGLANCSLNVVPTFLLH 121
                      +     L+VL LS   L+    N     +L+ L L + S+  +     H
Sbjct: 283 RLVALNLYGQPI---PTLKVLDLSHNHLLHVERNQPQFDRLENLYLDHNSIVTLKLSTHH 339

Query: 122 QYDLKYLDLSHNNL 135
              LK L LSHN+ 
Sbjct: 340 T--LKNLTLSHNDW 351

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 40.8 bits (96), Expect = 4e-05
 Identities = 19/118 (16%), Positives = 43/118 (36%), Gaps = 4/118 (3%)

Query: 21  LPNCLKYLSHLKVFDISQNQLSGSLSSTITSLTSLEYLDLSYNNFEGPCPLSLLAHHSKL 80
           + + L+Y        I              +L + + +    +      P +LL    ++
Sbjct: 13  IDSNLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRK-LPAALLDSFRQV 71

Query: 81  EVLVLSSTIL--VKTENFLPTFQLKELGLANCSLNVVPTFLLHQ-YDLKYLDLSHNNL 135
           E+L L+   +  + T  F     +++L +   ++  +P  +      L  L L  N+L
Sbjct: 72  ELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDL 129

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 50.0 bits (120), Expect = 2e-08
 Identities = 30/136 (22%), Positives = 54/136 (39%), Gaps = 10/136 (7%)

Query: 4   LKNLFELNLKGNNVEGHLPNCLKYLSHLKVFDISQNQLSGSLSSTITSLTSLEYLDLSYN 63
           LKNL  L L  N +    P     L  L+   +S+NQL   L   +    +L+ L +  N
Sbjct: 75  LKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLK-ELPEKM--PKTLQELRVHEN 131

Query: 64  NFEGPCPLSLLAHHSKLEVLVLS----STILVKTENFLPTFQLKELGLANCSLNVVPTFL 119
                   S+    +++ V+ L      +  ++   F    +L  + +A+ ++  +P  L
Sbjct: 132 EITK-VRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQGL 190

Query: 120 LHQYDLKYLDLSHNNL 135
                L  L L  N +
Sbjct: 191 PPS--LTELHLDGNKI 204

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 49.6 bits (119), Expect = 3e-08
 Identities = 29/134 (21%), Positives = 49/134 (36%), Gaps = 6/134 (4%)

Query: 4   LKNLFELNLKGNNVEGHLPNCLKYLSHLKVFDISQNQLSGSLSSTITSLTSLEYLDLSYN 63
           L  L  L L  N ++  LP  +     L+   + +N+++    S    L  +  ++L  N
Sbjct: 99  LVKLERLYLSKNQLK-ELPEKM--PKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTN 155

Query: 64  NF-EGPCPLSLLAHHSKLEVLVLSSTILVKTENFLPTFQLKELGLANCSLNVVPTFLLHQ 122
                           KL  + ++ T +      LP   L EL L    +  V    L  
Sbjct: 156 PLKSSGIENGAFQGMKKLSYIRIADTNITTIPQGLPP-SLTELHLDGNKITKVDAASLKG 214

Query: 123 YD-LKYLDLSHNNL 135
            + L  L LS N++
Sbjct: 215 LNNLAKLGLSFNSI 228

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 49.6 bits (119), Expect = 4e-08
 Identities = 35/156 (22%), Positives = 56/156 (35%), Gaps = 24/156 (15%)

Query: 4   LKNLFELNLKGNNVEGHLPNCLKYLSHLKVFDISQNQLSGSL--SSTITSLTSLEYLDLS 61
            K L EL +  N +     +    L+ + V ++  N L  S   +     +  L Y+ ++
Sbjct: 120 PKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIA 179

Query: 62  YNNFEG---PCPLSL-----------------LAHHSKLEVLVLSSTILVKTEN--FLPT 99
             N        P SL                 L   + L  L LS   +   +N     T
Sbjct: 180 DTNITTIPQGLPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANT 239

Query: 100 FQLKELGLANCSLNVVPTFLLHQYDLKYLDLSHNNL 135
             L+EL L N  L  VP  L     ++ + L +NN+
Sbjct: 240 PHLRELHLNNNKLVKVPGGLADHKYIQVVYLHNNNI 275

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 41.5 bits (98), Expect = 2e-05
 Identities = 26/134 (19%), Positives = 49/134 (36%), Gaps = 21/134 (15%)

Query: 4   LKNLFELNLKGNNVEGHLPNCLKYLSHLKVFDISQNQLSGSLSSTITSLTSLEYLDLSYN 63
             +L EL+L GN +       LK L++L    +S N +S   + ++ +   L  L L+ N
Sbjct: 191 PPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNN 250

Query: 64  NFEGPCPLSLLAHHSKLEVLVLSSTIL--VKTENFLPTFQLKELGLANCSLNVVPTFLLH 121
                     LA H  ++V+ L +  +  + + +F P     +                 
Sbjct: 251 KLVKVPG--GLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKA--------------- 293

Query: 122 QYDLKYLDLSHNNL 135
                 + L  N +
Sbjct: 294 --SYSGVSLFSNPV 305

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 50.0 bits (119), Expect = 3e-08
 Identities = 34/134 (25%), Positives = 52/134 (38%), Gaps = 17/134 (12%)

Query: 2   CELKNLFELNLKGNNVEGHLPNCLKYLSHLKVFDISQNQLSGSLSSTITSLTSLEYLDLS 61
           C +    EL L   N+   LP+ L     + V +I+QN L  SL        SLEYLD  
Sbjct: 56  CLINQFSELQLNRLNLS-SLPDNL--PPQITVLEITQNALI-SLPE---LPASLEYLDAC 108

Query: 62  YNNFEGPCPLSLLAHHSKLEVLVLSSTILVKTENFLPTFQLKELGLANCSLNVVPTFLLH 121
            N        +L    + L+ L + +  L           L+ +   N  L ++P     
Sbjct: 109 DNRLS-----TLPELPASLKHLDVDNNQLTMLPELPA--LLEYINADNNQLTMLPELPTS 161

Query: 122 QYDLKYLDLSHNNL 135
              L+ L + +N L
Sbjct: 162 ---LEVLSVRNNQL 172

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 47.7 bits (113), Expect = 2e-07
 Identities = 28/137 (20%), Positives = 49/137 (35%), Gaps = 19/137 (13%)

Query: 1   LCELKNLFELNLKGNNVEGHLPNCLKYLSHLKVFDISQNQLSGSLSSTITSLTSLEYLDL 60
             + +         N     L  CL  ++      +++  LS SL   +     +  L++
Sbjct: 33  WDKWEKQALPGENRNEAVSLLKECL--INQFSELQLNRLNLS-SLPDNL--PPQITVLEI 87

Query: 61  SYNNFEGPCPLSLLAHHSKLEVLVLSSTILVKTENFLPTF--QLKELGLANCSLNVVPTF 118
           + N        SL    + LE L      L    + LP     LK L + N  L ++P  
Sbjct: 88  TQNALI-----SLPELPASLEYLDACDNRL----STLPELPASLKHLDVDNNQLTMLPEL 138

Query: 119 LLHQYDLKYLDLSHNNL 135
                 L+Y++  +N L
Sbjct: 139 PAL---LEYINADNNQL 152

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 38.4 bits (89), Expect = 3e-04
 Identities = 28/138 (20%), Positives = 44/138 (31%), Gaps = 18/138 (13%)

Query: 3   ELKNLFELNLKGNNVEGHLPNCLKYLSHLKVFDISQNQLSGSLSSTITSLTSLEYLDLSY 62
              +L  L++  N +   LP     L ++   +   NQL+  L       TSLE L +  
Sbjct: 118 LPASLKHLDVDNNQLT-MLPELPALLEYI---NADNNQLT-MLPE---LPTSLEVLSVRN 169

Query: 63  NNFEGPCPLSLLAHHSKLEVLVLSSTILVK-----TENFLPTFQLKELGLANCSLNVVPT 117
           N         L      LE L +S+ +L         N                +  +P 
Sbjct: 170 NQLT-----FLPELPESLEALDVSTNLLESLPAVPVRNHHSEETEIFFRCRENRITHIPE 224

Query: 118 FLLHQYDLKYLDLSHNNL 135
            +L       + L  N L
Sbjct: 225 NILSLDPTCTIILEDNPL 242

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 49.8 bits (118), Expect = 3e-08
 Identities = 25/96 (26%), Positives = 40/96 (41%), Gaps = 3/96 (3%)

Query: 1   LCELKNLFELNLKGNNVEGHLPNCLKYLSHLKVFDISQNQLSGSLSSTITSLTSLEYLDL 60
           L +L  +  L+L  N +   LP  L  L  L+V   S N L  ++   + +L  L+ L L
Sbjct: 459 LEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALE-NVDG-VANLPRLQELLL 515

Query: 61  SYNNFEGPCPLSLLAHHSKLEVLVLSSTILVKTENF 96
             N  +    +  L    +L +L L    L + E  
Sbjct: 516 CNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGI 551

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 38.6 bits (89), Expect = 3e-04
 Identities = 30/136 (22%), Positives = 49/136 (36%), Gaps = 6/136 (4%)

Query: 3   ELKNLFELNLKGNNVEGHLPNCLKYLSHLKVFDISQNQLSGSLSSTITSLTSLEYLDLSY 62
           +      L+   +             + ++V  ++   L+  L   +  L  + +LDLS+
Sbjct: 415 DPMRAAYLDDLRSKFLLENSVLKMEYADVRVLHLAHKDLT-VLCH-LEQLLLVTHLDLSH 472

Query: 63  NNFEGPCPLSLLAHHSKLEVLVLSSTILVKTENFLPTFQLKELGLANCSLNVVPTF--LL 120
           N          LA    LEVL  S   L   +      +L+EL L N  L        L+
Sbjct: 473 NRLR--ALPPALAALRCLEVLQASDNALENVDGVANLPRLQELLLCNNRLQQSAAIQPLV 530

Query: 121 HQYDLKYLDLSHNNLV 136
               L  L+L  N+L 
Sbjct: 531 SCPRLVLLNLQGNSLC 546

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 49.5 bits (118), Expect = 4e-08
 Identities = 31/134 (23%), Positives = 55/134 (41%), Gaps = 2/134 (1%)

Query: 4   LKNLFELNLKGNNVEGHLPNCLKYLSHLKVFDISQNQLS--GSLSSTITSLTSLEYLDLS 61
             +   LN   N     +      L  L+   + +N L     ++    +++SLE LD+S
Sbjct: 352 PSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVS 411

Query: 62  YNNFEGPCPLSLLAHHSKLEVLVLSSTILVKTENFLPTFQLKELGLANCSLNVVPTFLLH 121
            N+          A    + VL LSS +L  +       ++K L L N  +  +P  + H
Sbjct: 412 LNSLNSHAYDRTCAWAESILVLNLSSNMLTGSVFRCLPPKVKVLDLHNNRIMSIPKDVTH 471

Query: 122 QYDLKYLDLSHNNL 135
              L+ L+++ N L
Sbjct: 472 LQALQELNVASNQL 485

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 40.6 bits (95), Expect = 6e-05
 Identities = 25/138 (18%), Positives = 48/138 (34%), Gaps = 7/138 (5%)

Query: 4   LKNLFELNLKGNNVEGHLPNCLKYLSHLKVFDISQNQLSGSLSSTITSLTSLEYLDLSYN 63
           LK+L   ++K               + + +  +S +           S +S  +L+ + N
Sbjct: 304 LKSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSISDTPFIHMVCPPSPSSFTFLNFTQN 363

Query: 64  NFEGPCPLSLLAHHSKLEVLVLSSTILVKTEN-FLPTFQLKELGLANCSLNVVPTFLLHQ 122
            F         +   +L+ L+L    L       L T  +  L   + SLN + +    +
Sbjct: 364 VFTD-SVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDR 422

Query: 123 Y-----DLKYLDLSHNNL 135
                  +  L+LS N L
Sbjct: 423 TCAWAESILVLNLSSNML 440

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 37.5 bits (87), Expect = 5e-04
 Identities = 19/135 (14%), Positives = 38/135 (28%), Gaps = 9/135 (6%)

Query: 6   NLFELNLKGNNVEGHLPNCLKYLSHLKVFDISQNQLSGSLSSTITSLTSLEYLDLSYNN- 64
           N++ L +               L  L +  +       S  +  +    +    LS ++ 
Sbjct: 282 NIYNLTITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSISDT 341

Query: 65  --FEGPCPLSLLAHHSKLEVLVLSSTILVKTE--NFLPTFQLKELGLANCSLNVVPTFLL 120
                 CP S     S    L  +  +   +         +L+ L L    L       L
Sbjct: 342 PFIHMVCPPSP----SSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVAL 397

Query: 121 HQYDLKYLDLSHNNL 135
              ++  L+    +L
Sbjct: 398 MTKNMSSLETLDVSL 412

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 49.3 bits (118), Expect = 4e-08
 Identities = 36/135 (26%), Positives = 55/135 (40%), Gaps = 8/135 (5%)

Query: 1   LCELKNLFELNLKGNNVEGHLPNCLKYLSHLKVFDISQNQLSGSLSSTITSLTSLEYLDL 60
           +  L NL  L LK N +   L   LK L+ +   ++S N L     S I  L S++ LDL
Sbjct: 59  VQYLNNLIGLELKDNQIT-DLAP-LKNLTKITELELSGNPLKNV--SAIAGLQSIKTLDL 114

Query: 61  SYNNFEGPCPLSLLAHHSKLEVLVLSSTILVKTENFLPTFQLKELGLANCSLNVVPTFLL 120
           +        PL+ L   S L+VL L    +           L+ L + N  ++ +   L 
Sbjct: 115 TSTQITDVTPLAGL---SNLQVLYLDLNQITNISPLAGLTNLQYLSIGNAQVSDLT-PLA 170

Query: 121 HQYDLKYLDLSHNNL 135
           +   L  L    N +
Sbjct: 171 NLSKLTTLKADDNKI 185

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 48.1 bits (115), Expect = 1e-07
 Identities = 31/135 (22%), Positives = 58/135 (42%), Gaps = 8/135 (5%)

Query: 1   LCELKNLFELNLKGNNVEGHLPNCLKYLSHLKVFDISQNQLSGSLSSTITSLTSLEYLDL 60
           +  L+++  L+L    +       L  LS+L+V  +  NQ++    S +  LT+L+YL +
Sbjct: 103 IAGLQSIKTLDLTSTQITD--VTPLAGLSNLQVLYLDLNQITNI--SPLAGLTNLQYLSI 158

Query: 61  SYNNFEGPCPLSLLAHHSKLEVLVLSSTILVKTENFLPTFQLKELGLANCSLNVVPTFLL 120
                     L+ LA+ SKL  L      +           L E+ L N  ++ V   L 
Sbjct: 159 GNAQVSD---LTPLANLSKLTTLKADDNKISDISPLASLPNLIEVHLKNNQISDVS-PLA 214

Query: 121 HQYDLKYLDLSHNNL 135
           +  +L  + L++  +
Sbjct: 215 NTSNLFIVTLTNQTI 229

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 44.7 bits (106), Expect = 2e-06
 Identities = 28/134 (20%), Positives = 51/134 (38%), Gaps = 9/134 (6%)

Query: 1   LCELKNLFELNLKGNNVEGHLPNCLKYLSHLKVFDISQNQLSGSLSSTITSLTSLEYLDL 60
           L  L NL  L L  N +  ++   L  L++L+   I   Q+S    + + +L+ L  L  
Sbjct: 125 LAGLSNLQVLYLDLNQIT-NISP-LAGLTNLQYLSIGNAQVSDL--TPLANLSKLTTLKA 180

Query: 61  SYNNFEGPCPLSLLAHHSKLEVLVLSSTILVKTENFLPTFQLKELGLANCSLNVVPTFLL 120
             N       +S LA    L  + L +  +        T  L  + L N ++   P  + 
Sbjct: 181 DDNKISD---ISPLASLPNLIEVHLKNNQISDVSPLANTSNLFIVTLTNQTITNQP--VF 235

Query: 121 HQYDLKYLDLSHNN 134
           +  +L   ++    
Sbjct: 236 YNNNLVVPNVVKGP 249

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 44.3 bits (105), Expect = 2e-06
 Identities = 27/135 (20%), Positives = 44/135 (32%), Gaps = 8/135 (5%)

Query: 1   LCELKNLFELNLKGNNVEGHLPNCLKYLSHLKVFDISQNQLSGSLSSTITSLTSLEYLDL 60
              L N  ++    +NV          L  +         ++      +  L +L  L+L
Sbjct: 15  DPALANAIKIAAGKSNVTD--TVTQADLDGITTLSAFGTGVTTI--EGVQYLNNLIGLEL 70

Query: 61  SYNNFEGPCPLSLLAHHSKLEVLVLSSTILVKTENFLPTFQLKELGLANCSLNVVPTFLL 120
             N      PL  L   +K+  L LS   L           +K L L +  +  V   L 
Sbjct: 71  KDNQITDLAPLKNL---TKITELELSGNPLKNVSAIAGLQSIKTLDLTSTQITDVT-PLA 126

Query: 121 HQYDLKYLDLSHNNL 135
              +L+ L L  N +
Sbjct: 127 GLSNLQVLYLDLNQI 141

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 47.7 bits (114), Expect = 1e-07
 Identities = 33/135 (24%), Positives = 58/135 (42%), Gaps = 9/135 (6%)

Query: 1   LCELKNLFELNLKGNNVEGHLPNCLKYLSHLKVFDISQNQLSGSLSSTITSLTSLEYLDL 60
             EL  +   N   +N++  L   +++ ++LK   +S NQ+S    S +  LT LE L +
Sbjct: 37  QKELSGVQNFNGDNSNIQ-SLAG-MQFFTNLKELHLSHNQISDL--SPLKDLTKLEELSV 92

Query: 61  SYNNFEGPCPLSLLAHHSKLEVLVLSSTILVKTENFLPTFQLKELGLANCSLNVVPTFLL 120
           + N  +    +        L  L L +  L  T++ +    L+ L + N  L  +   L 
Sbjct: 93  NRNRLKNLNGIPSA----CLSRLFLDNNELRDTDSLIHLKNLEILSIRNNKLKSIV-MLG 147

Query: 121 HQYDLKYLDLSHNNL 135
               L+ LDL  N +
Sbjct: 148 FLSKLEVLDLHGNEI 162

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 45.4 bits (108), Expect = 1e-06
 Identities = 37/135 (27%), Positives = 59/135 (43%), Gaps = 9/135 (6%)

Query: 1   LCELKNLFELNLKGNNVEGHLPNCLKYLSHLKVFDISQNQLSGSLSSTITSLTSLEYLDL 60
              L N  + NL   +V        K LS ++ F+   + +  SL+  +   T+L+ L L
Sbjct: 15  DPGLANAVKQNLGKQSVTD--LVSQKELSGVQNFNGDNSNIQ-SLAG-MQFFTNLKELHL 70

Query: 61  SYNNFEGPCPLSLLAHHSKLEVLVLSSTILVKTENFLPTFQLKELGLANCSLNVVPTFLL 120
           S+N       LS L   +KLE L ++   L      +P+  L  L L N  L      L+
Sbjct: 71  SHNQISD---LSPLKDLTKLEELSVNRNRLKNLNG-IPSACLSRLFLDNNELRDT-DSLI 125

Query: 121 HQYDLKYLDLSHNNL 135
           H  +L+ L + +N L
Sbjct: 126 HLKNLEILSIRNNKL 140

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 47.4 bits (113), Expect = 2e-07
 Identities = 26/135 (19%), Positives = 50/135 (37%), Gaps = 8/135 (5%)

Query: 1   LCELKNLFELNLKGNNVEGHLPNCLKYLSHLKVFDISQNQLSGSLSSTITSLTSLEYLDL 60
                   + NLK  +V          L+ +     + + +  S+   I  L ++  L L
Sbjct: 20  DDAFAETIKDNLKKKSVTD--AVTQNELNSIDQIIANNSDIK-SVQG-IQYLPNVTKLFL 75

Query: 61  SYNNFEGPCPLSLLAHHSKLEVLVLSSTILVKTENFLPTFQLKELGLANCSLNVVPTFLL 120
           + N       +  LA+   L  L L    +    +     +LK L L +  ++ +   L+
Sbjct: 76  NGNKLTD---IKPLANLKNLGWLFLDENKVKDLSSLKDLKKLKSLSLEHNGISDI-NGLV 131

Query: 121 HQYDLKYLDLSHNNL 135
           H   L+ L L +N +
Sbjct: 132 HLPQLESLYLGNNKI 146

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 47.4 bits (113), Expect = 2e-07
 Identities = 29/135 (21%), Positives = 59/135 (43%), Gaps = 8/135 (5%)

Query: 1   LCELKNLFELNLKGNNVEGHLPNCLKYLSHLKVFDISQNQLSGSLSSTITSLTSLEYLDL 60
             EL ++ ++    ++++  +   ++YL ++    ++ N+L+  +   + +L +L +L L
Sbjct: 42  QNELNSIDQIIANNSDIK-SVQG-IQYLPNVTKLFLNGNKLT-DIKP-LANLKNLGWLFL 97

Query: 61  SYNNFEGPCPLSLLAHHSKLEVLVLSSTILVKTENFLPTFQLKELGLANCSLNVVPTFLL 120
             N  +    LS L    KL+ L L    +      +   QL+ L L N  +  + T L 
Sbjct: 98  DENKVKD---LSSLKDLKKLKSLSLEHNGISDINGLVHLPQLESLYLGNNKITDI-TVLS 153

Query: 121 HQYDLKYLDLSHNNL 135
               L  L L  N +
Sbjct: 154 RLTKLDTLSLEDNQI 168

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 44.7 bits (106), Expect = 2e-06
 Identities = 33/135 (24%), Positives = 59/135 (43%), Gaps = 8/135 (5%)

Query: 1   LCELKNLFELNLKGNNVEGHLPNCLKYLSHLKVFDISQNQLSGSLSSTITSLTSLEYLDL 60
           +  L N+ +L L GN +   +   L  L +L    + +N++   LSS +  L  L+ L L
Sbjct: 64  IQYLPNVTKLFLNGNKLT-DIKP-LANLKNLGWLFLDENKVK-DLSS-LKDLKKLKSLSL 119

Query: 61  SYNNFEGPCPLSLLAHHSKLEVLVLSSTILVKTENFLPTFQLKELGLANCSLNVVPTFLL 120
            +N       ++ L H  +LE L L +  +          +L  L L +  ++ +   L 
Sbjct: 120 EHNGISD---INGLVHLPQLESLYLGNNKITDITVLSRLTKLDTLSLEDNQISDIV-PLA 175

Query: 121 HQYDLKYLDLSHNNL 135
               L+ L LS N++
Sbjct: 176 GLTKLQNLYLSKNHI 190

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 42.7 bits (101), Expect = 9e-06
 Identities = 30/137 (21%), Positives = 54/137 (39%), Gaps = 8/137 (5%)

Query: 1   LCELKNLFELNLKGNNVEGHLPNCLKYLSHLKVFDISQNQLSGSLSSTITSLTSLEYLDL 60
           L +LK L  L+L+ N +   +   L +L  L+   +  N+++    + ++ LT L+ L L
Sbjct: 108 LKDLKKLKSLSLEHNGIS-DING-LVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSL 163

Query: 61  SYNNFEGPCPLSLLAHHSKLEVLVLSSTILVKTENFLPTFQLKELGLANCSL-NVVPTFL 119
             N       +  LA  +KL+ L LS   +           L  L L +    N      
Sbjct: 164 EDNQISD---IVPLAGLTKLQNLYLSKNHISDLRALAGLKNLDVLELFSQECLNKPINHQ 220

Query: 120 LHQYDLKYLDLSHNNLV 136
            +      +  +  +LV
Sbjct: 221 SNLVVPNTVKNTDGSLV 237

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 46.9 bits (112), Expect = 3e-07
 Identities = 28/135 (20%), Positives = 48/135 (35%), Gaps = 9/135 (6%)

Query: 4   LKNLFELNLKGNNVEGHLPNCLKYLSHLKVFDISQNQLSGSLSSTITSLTSLEYLDLSYN 63
           L++L+ L L  N +          L  L+   IS+N L   +   +   +SL  L +  N
Sbjct: 77  LQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNHLV-EIPPNL--PSSLVELRIHDN 133

Query: 64  NFEGPCPLSLLAHHSKLEVLVLSSTILVKTENFLPTFQ---LKELGLANCSLNVVPTFLL 120
                 P  + +    +  + +    L  +      F    L  L ++   L  +P  L 
Sbjct: 134 RIRK-VPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGLKLNYLRISEAKLTGIPKDLP 192

Query: 121 HQYDLKYLDLSHNNL 135
               L  L L HN +
Sbjct: 193 E--TLNELHLDHNKI 205

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 40.0 bits (94), Expect = 8e-05
 Identities = 25/142 (17%), Positives = 44/142 (30%), Gaps = 15/142 (10%)

Query: 4   LKNLFELNLKGNNVEGHLPNCLKYLSHLKVFDISQNQLSGSLSSTITSLTSLEYLDLSYN 63
            + L EL+L  N ++      L   S L    +  NQ+    + +++ L +L  L L  N
Sbjct: 192 PETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNN 251

Query: 64  NFEG-PCPLSLLAHHSKLEVLVLSS--------TILVKTENFLPTFQLKELGLAN---CS 111
                P   + L     L+V+ L +                 +       + L N     
Sbjct: 252 KLSRVP---AGLPDLKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPY 308

Query: 112 LNVVPTFLLHQYDLKYLDLSHN 133
             V P       D   +   + 
Sbjct: 309 WEVQPATFRCVTDRLAIQFGNY 330

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 46.0 bits (109), Expect = 7e-07
 Identities = 31/136 (22%), Positives = 51/136 (37%), Gaps = 27/136 (19%)

Query: 4   LKNLFELNLKGNNVEGHLPNCLKYLSHLKVFDISQNQLSGSLSSTITSLTSLEYLDLSYN 63
           L NL  L L  N++          + +L+  D+S N L        + L +LE L L  N
Sbjct: 63  LTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNHLHTLDEFLFSDLQALEVLLLYNN 122

Query: 64  NFEGPCPLSLLAHHSKLEVLVLSSTILVKTENFLPTFQLKELGLANCSLNVVPTFLLHQY 123
                  + ++  ++                 F    QL++L L+   ++  P  L+   
Sbjct: 123 ------HIVVVDRNA-----------------FEDMAQLQKLYLSQNQISRFPVELIKDG 159

Query: 124 D----LKYLDLSHNNL 135
           +    L  LDLS N L
Sbjct: 160 NKLPKLMLLDLSSNKL 175

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 45.6 bits (108), Expect = 8e-07
 Identities = 22/137 (16%), Positives = 53/137 (38%), Gaps = 6/137 (4%)

Query: 5   KNLFELNLKGNNVEGHLPNCLKYLSHLKVFDISQNQLSGSL-SSTITSLTSLEYLDLSYN 63
           +N  EL      +             L+  +ISQN +   + +   ++L  L  + +   
Sbjct: 30  RNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKA 89

Query: 64  NFEGPCPLSLLAHHSKLEVLVLSSTILVK--TENFLPTFQLKELGLA-NCSLNVVP--TF 118
           N           +   L+ L++S+T +      + + + Q   L +  N +++ +   +F
Sbjct: 90  NNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSF 149

Query: 119 LLHQYDLKYLDLSHNNL 135
           +   ++   L L+ N +
Sbjct: 150 VGLSFESVILWLNKNGI 166

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 40.2 bits (94), Expect = 7e-05
 Identities = 27/140 (19%), Positives = 51/140 (36%), Gaps = 13/140 (9%)

Query: 4   LKNLFELNLKGNNVEGHLP-NCLKYLSHLKVFDISQ-NQLSGSLSSTITSLTSLEYLDLS 61
             +L ++ +  N+V   +  +    L  L    I + N L         +L +L+YL +S
Sbjct: 53  FGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLIS 112

Query: 62  YNNFEGPCPLSLLAHHSKLEVLVLSSTILVKTENFLP-------TFQLKELGLANCSLNV 114
               +   P     H  +  +L +   I + T   +        +F+   L L    +  
Sbjct: 113 NTGIKHL-PDVHKIHSLQKVLLDIQDNINIHT---IERNSFVGLSFESVILWLNKNGIQE 168

Query: 115 VPTFLLHQYDLKYLDLSHNN 134
           +     +   L  L+LS NN
Sbjct: 169 IHNSAFNGTQLDELNLSDNN 188

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 37.5 bits (87), Expect = 5e-04
 Identities = 25/137 (18%), Positives = 45/137 (32%), Gaps = 5/137 (3%)

Query: 4   LKNLFELNL-KGNNVEGHLPNCLKYLSHLKVFDISQNQLSGSLSSTITSLTSLEYLDLSY 62
           L  L E+ + K NN+    P   + L +L+   IS   +                LD+  
Sbjct: 78  LPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQD 137

Query: 63  NNF-EGPCPLSLLAHHSKLEVLVLSSTIL--VKTENFLPTFQLKELGLANCSLNVVPTFL 119
           N         S +    +  +L L+   +  +    F  T   +     N +L  +P  +
Sbjct: 138 NINIHTIERNSFVGLSFESVILWLNKNGIQEIHNSAFNGTQLDELNLSDNNNLEELPNDV 197

Query: 120 L-HQYDLKYLDLSHNNL 135
                    LD+S   +
Sbjct: 198 FHGASGPVILDISRTRI 214

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 45.1 bits (107), Expect = 1e-06
 Identities = 30/140 (21%), Positives = 50/140 (35%), Gaps = 8/140 (5%)

Query: 4   LKNLFELNLKGNNVEGHLP-NCLKYLSHLKVFDISQNQLSGSLSSTITSLTSLEYLDLSY 62
           L++L  L ++       +  N  + LS L +  +  NQ     +     L +LE L L+ 
Sbjct: 53  LQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLETGAFNGLANLEVLTLTQ 112

Query: 63  NNFEGPC-PLSLLAHHSKLEVLVLSSTILVKTEN---FLPTFQLKELGLANCSLNVVPT- 117
            N +G     +     + LE+LVL    + K +    FL   +   L L    +  +   
Sbjct: 113 CNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEE 172

Query: 118 --FLLHQYDLKYLDLSHNNL 135
                       L LS   L
Sbjct: 173 DLLNFQGKHFTLLRLSSITL 192

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 42.0 bits (99), Expect = 1e-05
 Identities = 24/112 (21%), Positives = 44/112 (39%), Gaps = 5/112 (4%)

Query: 29  SHLKVFDISQNQLSGSLSSTITSLTSLEYLDLSYNNFEGPCPLSLLAHHSKLEVLVLSST 88
           +H+   D+S N ++    ++ + L  L++L +           +     S L +L L   
Sbjct: 30  AHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYN 89

Query: 89  IL--VKTENFLPTFQLKELGLANCSLNVV---PTFLLHQYDLKYLDLSHNNL 135
               ++T  F     L+ L L  C+L+       F      L+ L L  NN+
Sbjct: 90  QFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNI 141

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 40.9 bits (96), Expect = 4e-05
 Identities = 30/134 (22%), Positives = 52/134 (38%), Gaps = 8/134 (5%)

Query: 9   ELNLKGNNVEGHLPNCLKYLSHLKVFDISQNQLSGSLSS-TITSLTSLEYLDLSYNNFEG 67
            ++L  N++          L  L+   + Q      + + T   L+SL  L L YN F  
Sbjct: 34  YVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQ 93

Query: 68  PCPLSLLAHHSKLEVLVLSS----TILVKTENFLPTFQLKELGLANCSLNVVP--TFLLH 121
                     + LEVL L+       ++    F P   L+ L L + ++  +   +F L+
Sbjct: 94  -LETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLN 152

Query: 122 QYDLKYLDLSHNNL 135
                 LDL+ N +
Sbjct: 153 MRRFHVLDLTFNKV 166

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 38.6 bits (90), Expect = 2e-04
 Identities = 32/133 (24%), Positives = 57/133 (42%), Gaps = 4/133 (3%)

Query: 6   NLFELNLKGNNVEGHLPNCLKYLSHLKVFDISQNQLSGSLSSTITSLTSLEYLDLSYNNF 65
            +   +L  + +   L +   + + L+   ++QN+++    +    LT L  L+LS N  
Sbjct: 276 GVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFL 335

Query: 66  EGPCPLSLLAHHSKLEVLVLSSTIL--VKTENFLPTFQLKELGLANCSLNVVPTFLLHQ- 122
                  +  +  KLEVL LS   +  +  ++FL    LKEL L    L  VP  +  + 
Sbjct: 336 GS-IDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLKSVPDGIFDRL 394

Query: 123 YDLKYLDLSHNNL 135
             L+ + L  N  
Sbjct: 395 TSLQKIWLHTNPW 407

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 44.3 bits (105), Expect = 2e-06
 Identities = 43/137 (31%), Positives = 58/137 (42%), Gaps = 11/137 (8%)

Query: 4   LKNLFELNLKGNNVEGHLPNCLKYLSHLKVFDISQNQLSGSLSSTITSLTSLEYLDLSYN 63
              L +LNL    +   L      L  L   D+S NQL  SL     +L +L  LD+S+N
Sbjct: 54  YTRLTQLNLDRAELT-KLQVDGT-LPVLGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFN 110

Query: 64  NFEGPCPLSLLAHHSKLEVLVLSSTILVKTEN--FLPTFQLKELGLANCSLNVVPTFL-- 119
                 PL  L    +L+ L L    L         PT +L++L LAN +L  +P  L  
Sbjct: 111 RLTS-LPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLN 169

Query: 120 -LHQYDLKYLDLSHNNL 135
            L    L  L L  N+L
Sbjct: 170 GLEN--LDTLLLQENSL 184

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 38.5 bits (90), Expect = 2e-04
 Identities = 22/83 (26%), Positives = 31/83 (37%), Gaps = 1/83 (1%)

Query: 53  TSLEYLDLSYNNFEGPCPLSLLAHHSKLEVLVLSSTILVKTENFLPTFQLKELGLANCSL 112
                L LS N       L+ L  +++L  L L    L K +       L  L L++  L
Sbjct: 31  KDTTILHLSENLLYT-FSLATLMPYTRLTQLNLDRAELTKLQVDGTLPVLGTLDLSHNQL 89

Query: 113 NVVPTFLLHQYDLKYLDLSHNNL 135
             +P        L  LD+S N L
Sbjct: 90  QSLPLLGQTLPALTVLDVSFNRL 112

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 43.6 bits (103), Expect = 2e-06
 Identities = 25/96 (26%), Positives = 42/96 (43%), Gaps = 2/96 (2%)

Query: 1   LCELKNLFELNLKGNNVEGHLPNCLKYLSHLKVFDISQNQLSGSLSSTITSLTSLEYLDL 60
             E  NL  L+L    +   + N L  L  LK  ++S+N++ G L      L +L +L+L
Sbjct: 45  TAEFVNLEFLSLINVGLI-SVSN-LPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLNL 102

Query: 61  SYNNFEGPCPLSLLAHHSKLEVLVLSSTILVKTENF 96
           S N  +    L  L     L+ L L +  +    ++
Sbjct: 103 SGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDY 138

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 43.1 bits (102), Expect = 3e-06
 Identities = 22/96 (22%), Positives = 41/96 (42%), Gaps = 2/96 (2%)

Query: 1   LCELKNLFELNLKGNNVEGHLPNCLKYLSHLKVFDISQNQLSGSLSSTITSLTSLEYLDL 60
             E + L  L+     +   + N L  L+ LK  ++S N++SG L        +L +L+L
Sbjct: 38  TDEFEELEFLSTINVGLT-SIAN-LPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLNL 95

Query: 61  SYNNFEGPCPLSLLAHHSKLEVLVLSSTILVKTENF 96
           S N  +    +  L     L+ L L +  +    ++
Sbjct: 96  SGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDY 131

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 43.8 bits (104), Expect = 3e-06
 Identities = 32/138 (23%), Positives = 54/138 (39%), Gaps = 6/138 (4%)

Query: 4   LKNLFELNLKGNNVEGHLPNCLKYLSHLKVFDISQNQLSGSLSSTITSLTSLEYLDLSYN 63
           L +L  L L GN ++         LS L+     +  L+   +  I  L +L+ L++++N
Sbjct: 75  LSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHN 134

Query: 64  NFEGPCPLSLLAHHSKLEVLVLSS----TILVKTENFLP--TFQLKELGLANCSLNVVPT 117
             +        ++ + LE L LSS    +I       L         L L+   +N +  
Sbjct: 135 LIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQP 194

Query: 118 FLLHQYDLKYLDLSHNNL 135
               +  LK L L  N L
Sbjct: 195 GAFKEIRLKELALDTNQL 212

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 38.8 bits (91), Expect = 2e-04
 Identities = 31/158 (19%), Positives = 49/158 (31%), Gaps = 31/158 (19%)

Query: 9   ELNLKGNNVEGHLPNCLKYLSHLKVFDISQNQLSGSLSSTITSLTSLEYLDLSYNN---- 64
            L+L  N +             L+V D+S+ ++         SL+ L  L L+ N     
Sbjct: 32  NLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSL 91

Query: 65  ----FEGPCPLSLL---------------AHHSKLEVLVLSS---TILVKTENFLPTFQL 102
               F G   L  L                H   L+ L ++          E F     L
Sbjct: 92  ALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNL 151

Query: 103 KELGLANCSLNVVPTFLLH-----QYDLKYLDLSHNNL 135
           + L L++  +  +    L            LDLS N +
Sbjct: 152 EHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPM 189

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 38.4 bits (90), Expect = 2e-04
 Identities = 36/140 (25%), Positives = 60/140 (42%), Gaps = 14/140 (10%)

Query: 4   LKNLFELNLKGNNVEGHLPNCLKYLSHLKVFDISQNQL-SGSLSSTITSLTSLEYLDLSY 62
           L +L +L     N+       + +L  LK  +++ N + S  L    ++LT+LE+LDLS 
Sbjct: 99  LSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSS 158

Query: 63  NNFEGPCPLSLLAHHSKLEVLVLSSTILVKTENFLPTF--------QLKELGLANCSLNV 114
           N  +     + L    ++ +L LS   L  + N +           +LKEL L    L  
Sbjct: 159 NKIQS-IYCTDLRVLHQMPLLNLS---LDLSLNPMNFIQPGAFKEIRLKELALDTNQLKS 214

Query: 115 VPTFLL-HQYDLKYLDLSHN 133
           VP  +      L+ + L  N
Sbjct: 215 VPDGIFDRLTSLQKIWLHTN 234

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 42.4 bits (99), Expect = 1e-05
 Identities = 16/63 (25%), Positives = 25/63 (39%), Gaps = 1/63 (1%)

Query: 4  LKNLFELNLKGNNVEGHLPN-CLKYLSHLKVFDISQNQLSGSLSSTITSLTSLEYLDLSY 62
           +NL EL ++      HL    L+ L  L+   I ++ L             L  L+LS+
Sbjct: 30 AENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSF 89

Query: 63 NNF 65
          N  
Sbjct: 90 NAL 92

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 38.2 bits (88), Expect = 4e-04
 Identities = 20/92 (21%), Positives = 33/92 (35%), Gaps = 2/92 (2%)

Query: 47  STITSLTSLEYLDLSYNNFEGPCPLSLLAHHSKLEVLVLSSTIL--VKTENFLPTFQLKE 104
             +    +L  L +          L  L    +L  L +  + L  V  + F  T +L  
Sbjct: 25  HHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSR 84

Query: 105 LGLANCSLNVVPTFLLHQYDLKYLDLSHNNLV 136
           L L+  +L  +    +    L+ L LS N L 
Sbjct: 85  LNLSFNALESLSWKTVQGLSLQELVLSGNPLH 116

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 41.6 bits (98), Expect = 1e-05
 Identities = 28/86 (32%), Positives = 42/86 (48%), Gaps = 3/86 (3%)

Query: 1   LCELKNLFELNLKGNNVEGHLPNCLKYLSHLKVFDISQNQLSGSLSSTITSLTSLEYLDL 60
           L  ++NL  L+L  N ++  + N       L+   IS NQ++ SLS  I  L +L  L +
Sbjct: 66  LSGMENLRILSLGRNLIK-KIENLDAVADTLEELWISYNQIA-SLSG-IEKLVNLRVLYM 122

Query: 61  SYNNFEGPCPLSLLAHHSKLEVLVLS 86
           S N       +  LA   KLE L+L+
Sbjct: 123 SNNKITNWGEIDKLAALDKLEDLLLA 148

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 38.1 bits (89), Expect = 2e-04
 Identities = 29/135 (21%), Positives = 51/135 (37%), Gaps = 8/135 (5%)

Query: 1   LCELKNLFELNLKGNNVEGHLPNCLKYLSHLKVFDISQNQLSGSLSSTITSLTSLEYLDL 60
             E + + EL+     +E  +   L  L   K   +S N +   +SS ++ + +L  L L
Sbjct: 22  ATEAEKV-ELHGMIPPIE-KMDATLSTLKACKHLALSTNNIE-KISS-LSGMENLRILSL 77

Query: 61  SYNNFEGPCPLSLLAHHSKLEVLVLSSTILVKTENFLPTFQLKELGLANCSLNVVPTF-- 118
             N  +    L  +A    LE L +S   +           L+ L ++N  +        
Sbjct: 78  GRNLIKKIENLDAVAD--TLEELWISYNQIASLSGIEKLVNLRVLYMSNNKITNWGEIDK 135

Query: 119 LLHQYDLKYLDLSHN 133
           L     L+ L L+ N
Sbjct: 136 LAALDKLEDLLLAGN 150

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 40.7 bits (96), Expect = 4e-05
 Identities = 35/148 (23%), Positives = 54/148 (36%), Gaps = 30/148 (20%)

Query: 1   LCELKNLFELNLKGNNVEG----HLPNCLKYLS-HLKVFDISQNQLS----GSLSSTITS 51
           L     L ELNL+ N +       +   L+  S  ++   +    L+    G LSST+ +
Sbjct: 52  LRVNPALAELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRT 111

Query: 52  LTSLEYLDLSYNNFEGPCPLSL----LAHHSKLEVLVLSSTILVKTENFLPTFQLKELGL 107
           L +L+ L LS N         L    L    +LE L L           L     + L  
Sbjct: 112 LPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEY-------CSLSAASCEPLAS 164

Query: 108 ANCSLNVVPTFLLHQYDLKYLDLSHNNL 135
                      L  + D K L +S+N++
Sbjct: 165 V----------LRAKPDFKELTVSNNDI 182

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 40.3 bits (95), Expect = 5e-05
 Identities = 26/141 (18%), Positives = 50/141 (35%), Gaps = 28/141 (19%)

Query: 5   KNLFELNLKGNNV-EGHLPNCLKYLSHLKVFDISQNQLS----GSLSSTITSLTSLEYLD 59
            ++  L+++   + +      L  L   +V  +    L+      +SS +    +L  L+
Sbjct: 3   LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELN 62

Query: 60  LSYNNFEGPCPLSLLAHHSKLEVLVLSSTILVKTENFLPTFQLKELGLANCSL-----NV 114
           L  N                  V  +   +        P+ ++++L L NC L      V
Sbjct: 63  LRSNELGDV------------GVHCVLQGLQT------PSCKIQKLSLQNCCLTGAGCGV 104

Query: 115 VPTFLLHQYDLKYLDLSHNNL 135
           + + L     L+ L LS N L
Sbjct: 105 LSSTLRTLPTLQELHLSDNLL 125

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 36.9 bits (86), Expect = 9e-04
 Identities = 30/148 (20%), Positives = 45/148 (30%), Gaps = 30/148 (20%)

Query: 1   LCELKNLFELNLKGNNVEG----HLPNCLKY-LSHLKVFDISQNQLS----GSLSSTITS 51
           L    +  EL +  N++       L   LK     L+   +    ++      L   + S
Sbjct: 166 LRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVAS 225

Query: 52  LTSLEYLDLSYNNF--EGPCPLS--LLAHHSKLEVLVLSSTILVKTENFLPTFQLKELGL 107
             SL  L L  N     G   L   LL   S+L  L +           +      +L  
Sbjct: 226 KASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWE-------CGITAKGCGDLCR 278

Query: 108 ANCSLNVVPTFLLHQYDLKYLDLSHNNL 135
                      L  +  LK L L+ N L
Sbjct: 279 V----------LRAKESLKELSLAGNEL 296

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 40.7 bits (96), Expect = 5e-05
 Identities = 29/133 (21%), Positives = 44/133 (33%), Gaps = 14/133 (10%)

Query: 3   ELKNLFELNLKGNNVEGHLPNCLKYLSHLKVFDISQNQLSGSLSSTITSLTSLEYLDLSY 62
              +L  +    N +E  LP  L+ L  L       N L            SLE +    
Sbjct: 171 LPPSLEFIAAGNNQLE-ELPE-LQNLPFLTAIYADNNSLK----KLPDLPLSLESIVAGN 224

Query: 63  NNFEGPCPLSLLAHHSKLEVLVLSSTILVKTENFLPTFQLKELGLANCSLNVVPTFLLHQ 122
           N  E    L  L     L  +   + +L    +  P   L+ L + +  L  +P      
Sbjct: 225 NILEELPELQNL---PFLTTIYADNNLLKTLPDLPP--SLEALNVRDNYLTDLPELPQS- 278

Query: 123 YDLKYLDLSHNNL 135
             L +LD+S N  
Sbjct: 279 --LTFLDVSENIF 289

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 38.8 bits (91), Expect = 2e-04
 Identities = 26/135 (19%), Positives = 43/135 (31%), Gaps = 14/135 (10%)

Query: 1   LCELKNLFELNLKGNNVEGHLPNCLKYLSHLKVFDISQNQLSGSLSSTITSLTSLEYLDL 60
           L     L  +++  N     L         L+      NQL   L   + +L  L  +  
Sbjct: 149 LQNSSFLKIIDVDNN----SLKKLPDLPPSLEFIAAGNNQLE-ELPE-LQNLPFLTAIYA 202

Query: 61  SYNNFEGPCPLSLLAHHSKLEVLVLSSTILVKTENFLPTFQLKELGLANCSLNVVPTFLL 120
             N+ +      L      LE +V  + IL +         L  +   N  L  +P    
Sbjct: 203 DNNSLK-----KLPDLPLSLESIVAGNNILEELPELQNLPFLTTIYADNNLLKTLPDLPP 257

Query: 121 HQYDLKYLDLSHNNL 135
               L+ L++  N L
Sbjct: 258 S---LEALNVRDNYL 269

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 38.8 bits (91), Expect = 2e-04
 Identities = 31/132 (23%), Positives = 47/132 (35%), Gaps = 12/132 (9%)

Query: 4   LKNLFELNLKGNNVEGHLPNCLKYLSHLKVFDISQNQLSGSLSSTITSLTSLEYLDLSYN 63
              L  L +  N +E  LP  L+  S LK+ D+  N L            SLE++    N
Sbjct: 130 PPLLEYLGVSNNQLE-KLPE-LQNSSFLKIIDVDNNSLK----KLPDLPPSLEFIAAGNN 183

Query: 64  NFEGPCPLSLLAHHSKLEVLVLSSTILVKTENFLPTFQLKELGLANCSLNVVPTFLLHQY 123
             E    L  L     L  +   +  L K  +      L+ +   N  L  +P  L +  
Sbjct: 184 QLEELPELQNL---PFLTAIYADNNSLKKLPDLP--LSLESIVAGNNILEELPE-LQNLP 237

Query: 124 DLKYLDLSHNNL 135
            L  +   +N L
Sbjct: 238 FLTTIYADNNLL 249

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 38.4 bits (90), Expect = 3e-04
 Identities = 24/135 (17%), Positives = 43/135 (31%), Gaps = 16/135 (11%)

Query: 1   LCELKNLFELNLKGNNVEGHLPNCLKYLSHLKVFDISQNQLSGSLSSTITSLTSLEYLDL 60
           L  L  L  +    N+++  LP+    L  +       N L       + +L  L  +  
Sbjct: 191 LQNLPFLTAIYADNNSLK-KLPDLPLSLESI---VAGNNIL--EELPELQNLPFLTTIYA 244

Query: 61  SYNNFEGPCPLSLLAHHSKLEVLVLSSTILVKTENFLPTFQLKELGLANCSLNVVPTFLL 120
             N  +     +L      LE L +    L           L  L ++    + +     
Sbjct: 245 DNNLLK-----TLPDLPPSLEALNVRDNYLTDLPELPQ--SLTFLDVSENIFSGLSELPP 297

Query: 121 HQYDLKYLDLSHNNL 135
           +   L YL+ S N +
Sbjct: 298 N---LYYLNASSNEI 309

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 39.6 bits (93), Expect = 6e-05
 Identities = 17/83 (20%), Positives = 28/83 (33%), Gaps = 2/83 (2%)

Query: 4   LKNLFELNLKGNNVEGHLPNCLKYLSHLKVFDISQNQLSGSLSSTITSLTSLEYLDLSYN 63
           L     ++   N +   L      L  LK   ++ N++         +L  L  L L+ N
Sbjct: 41  LDQFDAIDFSDNEIR-KLDG-FPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNN 98

Query: 64  NFEGPCPLSLLAHHSKLEVLVLS 86
           +      L  LA    L  L + 
Sbjct: 99  SLVELGDLDPLASLKSLTYLCIL 121

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 40.1 bits (94), Expect = 8e-05
 Identities = 29/172 (16%), Positives = 47/172 (27%), Gaps = 37/172 (21%)

Query: 1   LCELKNLFELNLKGNN--VEG--HLPNCLKYLSHLKVFDISQNQLS----------GSLS 46
           L E  ++ E+ L GN    E    L   +     L++ + S                 L 
Sbjct: 28  LLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLL 87

Query: 47  STITSLTSLEYLDLSYNNF--EGPCPL-SLLAHHSKLEVLVLSS---------------T 88
             +     L  + LS N F      PL   L+ H+ LE L L +                
Sbjct: 88  QALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQ 147

Query: 89  ILVKTENFLPTFQLKELGLANCSLNVVPTFLL-----HQYDLKYLDLSHNNL 135
            L   +       L+ +      L                 L  + +  N +
Sbjct: 148 ELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGI 199

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 37.4 bits (87), Expect = 6e-04
 Identities = 20/101 (19%), Positives = 34/101 (33%), Gaps = 14/101 (13%)

Query: 1   LCELKNLFELNLKGNN-----VEGHLPNCLKYLSHLKVFDISQNQLSG----SLSSTITS 51
               + L  + +  N      +E  L   L Y   LKV D+  N  +     +L+  + S
Sbjct: 183 FQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKS 242

Query: 52  LTSLEYLDLSYNNF--EGPCPLSL---LAHHSKLEVLVLSS 87
             +L  L L+       G   +        +  L+ L L  
Sbjct: 243 WPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQY 283

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A Length = 336

 Score = 39.9 bits (93), Expect = 1e-04
 Identities = 29/147 (19%), Positives = 61/147 (41%), Gaps = 11/147 (7%)

Query: 1   LCELKNLFELNLKGNNV-EGHLPNCLKYLSHLKVFDISQNQLSGSLSSTITSLTSLEYLD 59
                 +  ++L  + +    L   L   S L+   +   +LS  + +T+   ++L  L+
Sbjct: 89  HFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLN 148

Query: 60  LSY-NNFEGPCPLSLLAHHSKLEVLVLSSTILVKTENFLPTF-----QLKELGLANCSLN 113
           LS  + F      +LL+  S+L+ L LS       ++           + +L L+    N
Sbjct: 149 LSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKN 208

Query: 114 V----VPTFLLHQYDLKYLDLSHNNLV 136
           +    + T +    +L +LDLS + ++
Sbjct: 209 LQKSDLSTLVRRCPNLVHLDLSDSVML 235

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 39.6 bits (93), Expect = 1e-04
 Identities = 31/134 (23%), Positives = 55/134 (41%), Gaps = 6/134 (4%)

Query: 6   NLFELNLKGNNVEGHLPNCLKYLSHLKVFDISQNQLSGSLSSTI-TSLTSLEYLDLSYNN 64
           +  +L+L+ N +          L+ L++  ++ N+L  +L + I   L +LE L ++ N 
Sbjct: 38  DTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQ-TLPAGIFKELKNLETLWVTDNK 96

Query: 65  FEGPCPLSLLAHHSKLEVLVLSSTILVKTEN--FLPTFQLKELGLANCSLNVVPTFLLHQ 122
            +   P+ +      L  L L    L       F    +L  L L    L  +P  +  +
Sbjct: 97  LQA-LPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDK 155

Query: 123 -YDLKYLDLSHNNL 135
              LK L L +N L
Sbjct: 156 LTSLKELRLYNNQL 169

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 38.1 bits (89), Expect = 3e-04
 Identities = 19/137 (13%), Positives = 45/137 (32%), Gaps = 6/137 (4%)

Query: 4   LKNLFELNLKGNNVEGHLP-NCLKYLSHLKVFDISQNQLSGSLSS-TITSLTSLEYLDLS 61
           L N+  + +  +     L  +    LS +   +I   +    +    +  L  L++L + 
Sbjct: 54  LPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLGIF 113

Query: 62  YNNFEGPCPLSLLAHHSKLEVLVLSSTILVKT--ENFLP--TFQLKELGLANCSLNVVPT 117
               +    L+ +       +L ++    + +   N       +   L L N     V  
Sbjct: 114 NTGLKMFPDLTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTSVQG 173

Query: 118 FLLHQYDLKYLDLSHNN 134
           +  +   L  + L+ N 
Sbjct: 174 YAFNGTKLDAVYLNKNK 190

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 37.3 bits (87), Expect = 6e-04
 Identities = 17/113 (15%), Positives = 40/113 (35%), Gaps = 5/113 (4%)

Query: 28  LSHLKVFDISQNQLSGSLSSTITSLTSLEYLDLSYNNFEGPCPLSLLAHHSKLEVLVLSS 87
               +   + +  L    S   ++L ++  + +S +            + SK+  + + +
Sbjct: 30  PPSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRN 89

Query: 88  TILVKT---ENFLPTFQLKELGLANCSLNVVP--TFLLHQYDLKYLDLSHNNL 135
           T  +     +       LK LG+ N  L + P  T +        L+++ N  
Sbjct: 90  TRNLTYIDPDALKELPLLKFLGIFNTGLKMFPDLTKVYSTDIFFILEITDNPY 142

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	136
3m19_A	251	Variable lymphocyte receptor A diversity region; a	99.88
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	99.86
3m19_A	251	Variable lymphocyte receptor A diversity region; a	99.86
3e6j_A	229	Variable lymphocyte receptor diversity region; var	99.86
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	99.86
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	99.85
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	99.85
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	99.85
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	99.85
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	99.85
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	99.85
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	99.84
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	99.84
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	99.84
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	99.83
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.83
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	99.83
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	99.83
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	99.83
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	99.83
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	99.82
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.82
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	99.82
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	99.82
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	99.81
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	99.81
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	99.81
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	99.81
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	99.81
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	99.81
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	99.81
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	99.81
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	99.8
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	99.8
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	99.8
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	99.8
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	99.8
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	99.8
3e6j_A	229	Variable lymphocyte receptor diversity region; var	99.79
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	99.79
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	99.79
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	99.79
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	99.79
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	99.79
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	99.79
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	99.79
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	99.78
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	99.78
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	99.78
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	99.78
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	99.78
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	99.78
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	99.78
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	99.78
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	99.78
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	99.78
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	99.77
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	99.77
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	99.77
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	99.77
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	99.77
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	99.77
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	99.77
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	99.77
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	99.77
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	99.77
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	99.77
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	99.77
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	99.77
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	99.77
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	99.77
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	99.76
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	99.76
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	99.76
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	99.76
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	99.76
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	99.75
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	99.75
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	99.75
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	99.75
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	99.75
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	99.75
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	99.75
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	99.75
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	99.75
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	99.75
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	99.74
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	99.73
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	99.72
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	99.72
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	99.72
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	99.72
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	99.72
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	99.71
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	99.71
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	99.71
1o6v_A	466	Internalin A; bacterial infection, extracellular r	99.71
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	99.7
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	99.7
1o6v_A	466	Internalin A; bacterial infection, extracellular r	99.7
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	99.69
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	99.69
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.68
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	99.68
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	99.66
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	99.66
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	99.65
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	99.64
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	99.64
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	99.64
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	99.63
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	99.63
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	99.63
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	99.63
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	99.62
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	99.62
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.61
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	99.59
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	99.59
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	99.59
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	99.58
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	99.58
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	99.58
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	99.58
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	99.58
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	99.58
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	99.58
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	99.57
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	99.56
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	99.56
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	99.54
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	99.5
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	99.47
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	99.45
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	99.44
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	99.42
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	99.4
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	99.39
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	99.38
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	99.35
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	99.32
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	99.26
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	99.09
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	99.02
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	98.99
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	98.95
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	98.92
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	98.88
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	98.86
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	98.84
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	98.78
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	98.66
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	98.55
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	98.45
4gt6_A	394	Cell surface protein; leucine rich repeats, putati	98.32
4gt6_A	394	Cell surface protein; leucine rich repeats, putati	98.26
4h09_A	379	Hypothetical leucine rich repeat protein; two LRR_	98.23
4fs7_A	394	Uncharacterized protein; leucine-rich repeats, pro	98.17
4fs7_A	394	Uncharacterized protein; leucine-rich repeats, pro	98.15
1pgv_A	197	TMD-1, tropomodulin TMD-1; structural genomics, PS	98.12
4h09_A	379	Hypothetical leucine rich repeat protein; two LRR_	98.03
1pgv_A	197	TMD-1, tropomodulin TMD-1; structural genomics, PS	97.7
3rfe_A	130	Platelet glycoprotein IB beta chain; platelet surf	97.41
3rfe_A	130	Platelet glycoprotein IB beta chain; platelet surf	97.28
2lz0_A	100	Uncharacterized protein; hypothetical leucine rich	85.99

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=99.88  E-value=1.9e-21  Score=123.05  Aligned_cols=133  Identities=25%  Similarity=0.274  Sum_probs=90.0

Q ss_pred             CCCCcccEEEcCCCcccccCcccccCCCcccEEEccCCccccccchhhhccCCCCEEEccCCcCcCCCChHhhhcCccce
Q 039528            2 CELKNLFELNLKGNNVEGHLPNCLKYLSHLKVFDISQNQLSGSLSSTITSLTSLEYLDLSYNNFEGPCPLSLLAHHSKLE   81 (136)
Q Consensus         2 ~~l~~L~~l~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~~l~   81 (136)
                      .++++|++|++++|.+++..+..+..+++|++|++++|.+++..+..+..+++|++|++++|.++ .++...+..+++|+
T Consensus        56 ~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~-~~~~~~~~~l~~L~  134 (251)
T 3m19_A           56 RGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQLK-SLPSGVFDRLTKLK  134 (251)
T ss_dssp             TTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCC
T ss_pred             cCcccCCEEECCCCcCCccCHhHhccCCcCCEEECCCCcccccChhHhcccCCCCEEEcCCCcCC-CcChhHhccCCccc
Confidence            34566777777777777655566667777777777777776555556667777777777777776 34444456677777


Q ss_pred             EEEeccceeeecc--CCCCCccccEEEcCCCCCCCCCh-hhhcCCCCcEEEcCCCcC
Q 039528           82 VLVLSSTILVKTE--NFLPTFQLKELGLANCSLNVVPT-FLLHQYDLKYLDLSHNNL  135 (136)
Q Consensus        82 ~l~l~~~~~~~~~--~~~~~~~L~~l~l~~n~~~~~~~-~~~~~~~L~~l~l~~n~l  135 (136)
                      ++++++|.+...+  .+..+++|++|++++|.++.++. .+..+++|+.+++++|++
T Consensus       135 ~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~  191 (251)
T 3m19_A          135 ELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQF  191 (251)
T ss_dssp             EEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCB
T ss_pred             EEECcCCcCCccCHHHcCcCcCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCce
Confidence            7777777665554  34556677777777777755553 666777777777777765

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=99.86  E-value=7.2e-21  Score=118.36  Aligned_cols=130  Identities=22%  Similarity=0.291  Sum_probs=116.2

Q ss_pred             CcccEEEcCCCcccccCcccccCCCcccEEEccCCccccccchhhhccCCCCEEEccCCcCcCCCChHhhhcCccceEEE
Q 039528            5 KNLFELNLKGNNVEGHLPNCLKYLSHLKVFDISQNQLSGSLSSTITSLTSLEYLDLSYNNFEGPCPLSLLAHHSKLEVLV   84 (136)
Q Consensus         5 ~~L~~l~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~~l~~l~   84 (136)
                      +.++.|++++|.+++..+..|..+++|++|++++|.+++..+..|..+++|++|++++|.++ .++...+..+++|+.++
T Consensus        32 ~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~-~l~~~~f~~l~~L~~L~  110 (220)
T 2v9t_B           32 ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKIT-ELPKSLFEGLFSLQLLL  110 (220)
T ss_dssp             TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSCCC-CCCTTTTTTCTTCCEEE
T ss_pred             cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCcCC-ccCHhHccCCCCCCEEE
Confidence            46899999999999877778999999999999999999888899999999999999999998 56666688999999999


Q ss_pred             eccceeeecc--CCCCCccccEEEcCCCCCCCCCh-hhhcCCCCcEEEcCCCcC
Q 039528           85 LSSTILVKTE--NFLPTFQLKELGLANCSLNVVPT-FLLHQYDLKYLDLSHNNL  135 (136)
Q Consensus        85 l~~~~~~~~~--~~~~~~~L~~l~l~~n~~~~~~~-~~~~~~~L~~l~l~~n~l  135 (136)
                      +++|.+....  .+..+++|+.|++++|.++.++. .+..+++|+.+++++|++
T Consensus       111 L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~  164 (220)
T 2v9t_B          111 LNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPF  164 (220)
T ss_dssp             CCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCE
T ss_pred             CCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCc
Confidence            9999887663  56778899999999999977664 688899999999999986

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=99.86  E-value=1.4e-20  Score=119.02  Aligned_cols=131  Identities=26%  Similarity=0.339  Sum_probs=116.0

Q ss_pred             CcccEEEcCCCcccccCcccccCCCcccEEEccCCccccccchhhhccCCCCEEEccCCcCcCCCChHhhhcCccceEEE
Q 039528            5 KNLFELNLKGNNVEGHLPNCLKYLSHLKVFDISQNQLSGSLSSTITSLTSLEYLDLSYNNFEGPCPLSLLAHHSKLEVLV   84 (136)
Q Consensus         5 ~~L~~l~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~~l~~l~   84 (136)
                      +.++.|++++|.+.+..+..+..+++|++|++++|.+++..+..+..+++|++|++++|.++ ..+...+..+++|++++
T Consensus        35 ~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~  113 (251)
T 3m19_A           35 ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLA-SLPLGVFDHLTQLDKLY  113 (251)
T ss_dssp             TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCC-CCCTTTTTTCTTCCEEE
T ss_pred             CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECCCCccc-ccChhHhcccCCCCEEE
Confidence            46899999999999888888999999999999999999877888999999999999999998 45545688899999999


Q ss_pred             eccceeeeccC--CCCCccccEEEcCCCCCCCCCh-hhhcCCCCcEEEcCCCcCC
Q 039528           85 LSSTILVKTEN--FLPTFQLKELGLANCSLNVVPT-FLLHQYDLKYLDLSHNNLV  136 (136)
Q Consensus        85 l~~~~~~~~~~--~~~~~~L~~l~l~~n~~~~~~~-~~~~~~~L~~l~l~~n~l~  136 (136)
                      +++|.+...+.  +..+++|+.|++++|.++.++. .+..+++|+.|++++|.++
T Consensus       114 L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~  168 (251)
T 3m19_A          114 LGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQ  168 (251)
T ss_dssp             CCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCS
T ss_pred             cCCCcCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCC
Confidence            99998876653  5678899999999999987776 7889999999999999874

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=99.86  E-value=1.2e-20  Score=118.00  Aligned_cols=132  Identities=23%  Similarity=0.228  Sum_probs=115.0

Q ss_pred             CCcccEEEcCCCcccccCcccccCCCcccEEEccCCccccccchhhhccCCCCEEEccCCcCcCCCChHhhhcCccceEE
Q 039528            4 LKNLFELNLKGNNVEGHLPNCLKYLSHLKVFDISQNQLSGSLSSTITSLTSLEYLDLSYNNFEGPCPLSLLAHHSKLEVL   83 (136)
Q Consensus         4 l~~L~~l~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~~l~~l   83 (136)
                      .++|++|++++|.+++..+..+..+++|++|++++|.++...+..+..+++|++|++++|+++ .++...+..+++|+.+
T Consensus        39 ~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~-~l~~~~~~~l~~L~~L  117 (229)
T 3e6j_A           39 PTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQLT-VLPSAVFDRLVHLKEL  117 (229)
T ss_dssp             CTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEE
T ss_pred             CCCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCCCcCC-ccChhHhCcchhhCeE
Confidence            356999999999999888888999999999999999998666667889999999999999998 4555567889999999


Q ss_pred             Eeccceeeecc-CCCCCccccEEEcCCCCCCCCCh-hhhcCCCCcEEEcCCCcCC
Q 039528           84 VLSSTILVKTE-NFLPTFQLKELGLANCSLNVVPT-FLLHQYDLKYLDLSHNNLV  136 (136)
Q Consensus        84 ~l~~~~~~~~~-~~~~~~~L~~l~l~~n~~~~~~~-~~~~~~~L~~l~l~~n~l~  136 (136)
                      ++++|.+...+ .+..+++|++|++++|.++.++. .+..+++|+.+++++|+++
T Consensus       118 ~Ls~N~l~~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~  172 (229)
T 3e6j_A          118 FMCCNKLTELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPWD  172 (229)
T ss_dssp             ECCSSCCCSCCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCBC
T ss_pred             eccCCcccccCcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCCcc
Confidence            99999887765 45677799999999999987774 6888999999999999864

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=99.86  E-value=1.6e-20  Score=120.10  Aligned_cols=133  Identities=30%  Similarity=0.361  Sum_probs=91.0

Q ss_pred             CCCCcccEEEcCCCcccccCcccccCCCcccEEEccCCccccccchhhhccCCCCEEEccCCcCcCCCChHhhhcCccce
Q 039528            2 CELKNLFELNLKGNNVEGHLPNCLKYLSHLKVFDISQNQLSGSLSSTITSLTSLEYLDLSYNNFEGPCPLSLLAHHSKLE   81 (136)
Q Consensus         2 ~~l~~L~~l~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~~l~   81 (136)
                      ..+++|++|++++|.+++..+..+..+++|++|++++|.+++..+..+..+++|++|++++|.+++ .+...+..+++|+
T Consensus        82 ~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~-~~~~~~~~l~~L~  160 (272)
T 3rfs_A           82 KELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQS-LPKGVFDKLTNLT  160 (272)
T ss_dssp             TTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCC-CCTTTTTTCTTCC
T ss_pred             cCCCCCCEEECCCCccCccChhHhcCCcCCCEEECCCCcCCccCHHHhccCCCCCEEECCCCccCc-cCHHHhccCccCC
Confidence            346667777777777775555556777777777777777765555556777777777777777763 3434456677777


Q ss_pred             EEEeccceeeeccC--CCCCccccEEEcCCCCCCCCCh-hhhcCCCCcEEEcCCCcC
Q 039528           82 VLVLSSTILVKTEN--FLPTFQLKELGLANCSLNVVPT-FLLHQYDLKYLDLSHNNL  135 (136)
Q Consensus        82 ~l~l~~~~~~~~~~--~~~~~~L~~l~l~~n~~~~~~~-~~~~~~~L~~l~l~~n~l  135 (136)
                      .+++++|.+...+.  +..+++|+.|++++|.++.++. .+..+++|+.|++++|++
T Consensus       161 ~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~  217 (272)
T 3rfs_A          161 ELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPW  217 (272)
T ss_dssp             EEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCB
T ss_pred             EEECCCCCcCccCHHHhcCCccCCEEECCCCcCCccCHHHHhCCcCCCEEEccCCCc
Confidence            77777776655542  4556677888888777755543 567777788888877765

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=99.85  E-value=4.4e-20  Score=117.94  Aligned_cols=131  Identities=30%  Similarity=0.364  Sum_probs=62.3

Q ss_pred             CCcccEEEcCCCcccccCcccccCCCcccEEEccCCccccccchhhhccCCCCEEEccCCcCcCCCChHhhhcCccceEE
Q 039528            4 LKNLFELNLKGNNVEGHLPNCLKYLSHLKVFDISQNQLSGSLSSTITSLTSLEYLDLSYNNFEGPCPLSLLAHHSKLEVL   83 (136)
Q Consensus         4 l~~L~~l~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~~l~~l   83 (136)
                      +++|++|++++|.+....+..+..+++|++|++++|.+++..+..+..+++|++|++++|.+. .++...+..+++|+.+
T Consensus        84 l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~-~~~~~~~~~l~~L~~L  162 (270)
T 2o6q_A           84 LKNLETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQ-SLPKGVFDKLTSLKEL  162 (270)
T ss_dssp             CTTCCEEECCSSCCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEE
T ss_pred             CCCCCEEECCCCcCCcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCC-ccCHhHccCCccccee
Confidence            334444444444444333333344444444444444444333334444455555555555544 2232334445555555


Q ss_pred             Eeccceeeecc--CCCCCccccEEEcCCCCCCCCCh-hhhcCCCCcEEEcCCCcC
Q 039528           84 VLSSTILVKTE--NFLPTFQLKELGLANCSLNVVPT-FLLHQYDLKYLDLSHNNL  135 (136)
Q Consensus        84 ~l~~~~~~~~~--~~~~~~~L~~l~l~~n~~~~~~~-~~~~~~~L~~l~l~~n~l  135 (136)
                      ++++|.+...+  .+..+++|++|++++|.++.+|. .+..+++|+.+++++|++
T Consensus       163 ~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~  217 (270)
T 2o6q_A          163 RLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQENPW  217 (270)
T ss_dssp             ECCSSCCSCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCB
T ss_pred             EecCCcCcEeChhHhccCCCcCEEECCCCcCCcCCHHHhccccCCCEEEecCCCe
Confidence            55555444333  23444555666666665544443 345555666666666554

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=99.85  E-value=4.4e-20  Score=117.94  Aligned_cols=134  Identities=28%  Similarity=0.298  Sum_probs=88.8

Q ss_pred             CCCCcccEEEcCCCcccccCcccccCCCcccEEEccCCccccccchhhhccCCCCEEEccCCcCcCCCChHhhhcCccce
Q 039528            2 CELKNLFELNLKGNNVEGHLPNCLKYLSHLKVFDISQNQLSGSLSSTITSLTSLEYLDLSYNNFEGPCPLSLLAHHSKLE   81 (136)
Q Consensus         2 ~~l~~L~~l~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~~l~   81 (136)
                      ..+++|++|++++|.++...+..|..+++|++|++++|.++...+..+..+++|++|++++|.+++ .+...+..+++|+
T Consensus        58 ~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~-~~~~~~~~l~~L~  136 (270)
T 2o6q_A           58 HRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQLKS-LPPRVFDSLTKLT  136 (270)
T ss_dssp             SSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECCSSCCCCCCTTTTTTCSSCCEEECCSSCCCC-CCTTTTTTCTTCC
T ss_pred             cCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECCCCcCCcCCHhHcccccCCCEEECCCCccCe-eCHHHhCcCcCCC
Confidence            345666667776666664444455666777777777776665555556667777777777777763 3334466677777


Q ss_pred             EEEeccceeeeccC--CCCCccccEEEcCCCCCCCCCh-hhhcCCCCcEEEcCCCcCC
Q 039528           82 VLVLSSTILVKTEN--FLPTFQLKELGLANCSLNVVPT-FLLHQYDLKYLDLSHNNLV  136 (136)
Q Consensus        82 ~l~l~~~~~~~~~~--~~~~~~L~~l~l~~n~~~~~~~-~~~~~~~L~~l~l~~n~l~  136 (136)
                      ++++++|.+...+.  +..+++|+.|++++|.++.++. .+..+++|++|++++|.++
T Consensus       137 ~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~  194 (270)
T 2o6q_A          137 YLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLK  194 (270)
T ss_dssp             EEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCCS
T ss_pred             EEECCCCcCCccCHhHccCCcccceeEecCCcCcEeChhHhccCCCcCEEECCCCcCC
Confidence            77777776655542  4566678888888887766654 5677788888888877653

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=99.85  E-value=5.7e-20  Score=113.26  Aligned_cols=132  Identities=26%  Similarity=0.322  Sum_probs=113.5

Q ss_pred             CCcccEEEcCCCcccccCcccccCCCcccEEEccCCccccccchhhhccCCCCEEEccCCcCcCCCChHhhhcCccceEE
Q 039528            4 LKNLFELNLKGNNVEGHLPNCLKYLSHLKVFDISQNQLSGSLSSTITSLTSLEYLDLSYNNFEGPCPLSLLAHHSKLEVL   83 (136)
Q Consensus         4 l~~L~~l~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~~l~~l   83 (136)
                      .+++++|++++|.+++..+..+..+++|++|++++|.+++..+..+..+++|++|++++|.++ .++...+..+++|+++
T Consensus        27 ~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~-~~~~~~~~~l~~L~~L  105 (208)
T 2o6s_A           27 PAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQ-SLPNGVFDKLTQLKEL  105 (208)
T ss_dssp             CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEE
T ss_pred             CCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCcCC-ccCHhHhcCccCCCEE
Confidence            456999999999999766677889999999999999998666667889999999999999998 4554557889999999


Q ss_pred             EeccceeeeccC--CCCCccccEEEcCCCCCCCCCh-hhhcCCCCcEEEcCCCcCC
Q 039528           84 VLSSTILVKTEN--FLPTFQLKELGLANCSLNVVPT-FLLHQYDLKYLDLSHNNLV  136 (136)
Q Consensus        84 ~l~~~~~~~~~~--~~~~~~L~~l~l~~n~~~~~~~-~~~~~~~L~~l~l~~n~l~  136 (136)
                      ++++|.+...+.  +..+++|++|++++|.++.++. .+..+++|+.+++++|+++
T Consensus       106 ~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~  161 (208)
T 2o6s_A          106 ALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWD  161 (208)
T ss_dssp             ECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBC
T ss_pred             EcCCCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCCCee
Confidence            999998876653  5778899999999999977775 5788999999999999763

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=99.85  E-value=4.5e-20  Score=114.77  Aligned_cols=130  Identities=19%  Similarity=0.244  Sum_probs=113.5

Q ss_pred             CcccEEEcCCCcccccCc-ccccCCCcccEEEccCCccccccchhhhccCCCCEEEccCCcCcCCCChHhhhcCccceEE
Q 039528            5 KNLFELNLKGNNVEGHLP-NCLKYLSHLKVFDISQNQLSGSLSSTITSLTSLEYLDLSYNNFEGPCPLSLLAHHSKLEVL   83 (136)
Q Consensus         5 ~~L~~l~l~~~~l~~~~~-~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~~l~~l   83 (136)
                      +.+++|++++|.+++..+ ..|..+++|++|++++|.+++..+..+..+++|++|++++|.+++ ++...+..+++|+++
T Consensus        32 ~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~-~~~~~~~~l~~L~~L  110 (220)
T 2v70_A           32 QYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLEN-VQHKMFKGLESLKTL  110 (220)
T ss_dssp             TTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCC-CCGGGGTTCSSCCEE
T ss_pred             CCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCCccCc-cCHhHhcCCcCCCEE
Confidence            357899999999997644 568899999999999999997777789999999999999999984 555668899999999


Q ss_pred             Eeccceeeecc--CCCCCccccEEEcCCCCCCCC-ChhhhcCCCCcEEEcCCCcC
Q 039528           84 VLSSTILVKTE--NFLPTFQLKELGLANCSLNVV-PTFLLHQYDLKYLDLSHNNL  135 (136)
Q Consensus        84 ~l~~~~~~~~~--~~~~~~~L~~l~l~~n~~~~~-~~~~~~~~~L~~l~l~~n~l  135 (136)
                      ++++|.+....  .+..+++|+.|++++|.++.+ |..+..+++|+.|++++|++
T Consensus       111 ~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l  165 (220)
T 2v70_A          111 MLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPF  165 (220)
T ss_dssp             ECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCE
T ss_pred             ECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCC
Confidence            99999887663  567788999999999999665 67899999999999999986

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=99.85  E-value=2.5e-20  Score=130.38  Aligned_cols=130  Identities=25%  Similarity=0.263  Sum_probs=116.4

Q ss_pred             cccEEEcCCCcccccCcccccCCCcccEEEccCCccccccchhhhccCCCCEEEccCCcCcCCCChHhhhcCccceEEEe
Q 039528            6 NLFELNLKGNNVEGHLPNCLKYLSHLKVFDISQNQLSGSLSSTITSLTSLEYLDLSYNNFEGPCPLSLLAHHSKLEVLVL   85 (136)
Q Consensus         6 ~L~~l~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~~l~~l~l   85 (136)
                      .+++|++++|.++...+..|.++++|++|++++|.++++.++.|..+++|++|++++|+++ .++...+..+++|++|++
T Consensus        53 ~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~-~l~~~~f~~L~~L~~L~L  131 (635)
T 4g8a_A           53 STKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQ-SLALGAFSGLSSLQKLVA  131 (635)
T ss_dssp             TCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCC-EECGGGGTTCTTCCEEEC
T ss_pred             CCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCC-CCCHHHhcCCCCCCEEEC
Confidence            6899999999999777789999999999999999999777788999999999999999998 566667899999999999


Q ss_pred             ccceeeecc--CCCCCccccEEEcCCCCCC--CCChhhhcCCCCcEEEcCCCcCC
Q 039528           86 SSTILVKTE--NFLPTFQLKELGLANCSLN--VVPTFLLHQYDLKYLDLSHNNLV  136 (136)
Q Consensus        86 ~~~~~~~~~--~~~~~~~L~~l~l~~n~~~--~~~~~~~~~~~L~~l~l~~n~l~  136 (136)
                      ++|.+...+  .+..+++|++|++++|.++  .+|..++.+++|++|++++|.++
T Consensus       132 s~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~  186 (635)
T 4g8a_A          132 VETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQ  186 (635)
T ss_dssp             TTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCC
T ss_pred             CCCcCCCCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCcccc
Confidence            999887665  4678889999999999994  46788999999999999999874

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=99.85  E-value=1.1e-20  Score=115.63  Aligned_cols=130  Identities=17%  Similarity=0.125  Sum_probs=106.2

Q ss_pred             CCCcccEEEcCCCcccccCcccccCCCcccEEEccCCccccccchhhhccCCCCEEEccCCcCcCCCChHhhhcCccceE
Q 039528            3 ELKNLFELNLKGNNVEGHLPNCLKYLSHLKVFDISQNQLSGSLSSTITSLTSLEYLDLSYNNFEGPCPLSLLAHHSKLEV   82 (136)
Q Consensus         3 ~l~~L~~l~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~~l~~   82 (136)
                      .+++|++|++++|.+.  .+..+..+++|++|++++|.+++..+..+..+++|++|++++|.+++..+ ..+..+++|++
T Consensus        64 ~l~~L~~L~l~~n~~~--~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~-~~l~~l~~L~~  140 (197)
T 4ezg_A           64 YAHNIKDLTINNIHAT--NYNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSIL-TKINTLPKVNS  140 (197)
T ss_dssp             GCTTCSEEEEESCCCS--CCGGGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEEECCSSBCBGGGH-HHHTTCSSCCE
T ss_pred             cCCCCCEEEccCCCCC--cchhhhcCCCCCEEEeECCccCcccChhhcCCCCCCEEEecCCccCcHhH-HHHhhCCCCCE
Confidence            4677888888888665  23467888999999999998887677888889999999999999975444 44788999999


Q ss_pred             EEeccce-eeeccCCCCCccccEEEcCCCCCCCCChhhhcCCCCcEEEcCCCcCC
Q 039528           83 LVLSSTI-LVKTENFLPTFQLKELGLANCSLNVVPTFLLHQYDLKYLDLSHNNLV  136 (136)
Q Consensus        83 l~l~~~~-~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~L~~l~l~~n~l~  136 (136)
                      +++++|. +.+.+.+..+++|+.|++++|.++.++ .+..+++|+.|++++|.+.
T Consensus       141 L~L~~n~~i~~~~~l~~l~~L~~L~l~~n~i~~~~-~l~~l~~L~~L~l~~N~i~  194 (197)
T 4ezg_A          141 IDLSYNGAITDIMPLKTLPELKSLNIQFDGVHDYR-GIEDFPKLNQLYAFSQTIG  194 (197)
T ss_dssp             EECCSCTBCCCCGGGGGCSSCCEEECTTBCCCCCT-TGGGCSSCCEEEECBC---
T ss_pred             EEccCCCCccccHhhcCCCCCCEEECCCCCCcChH-HhccCCCCCEEEeeCcccC
Confidence            9999986 777777777889999999999998877 7888999999999999863

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=99.84  E-value=4.8e-20  Score=118.48  Aligned_cols=129  Identities=22%  Similarity=0.228  Sum_probs=50.4

Q ss_pred             CcccEEEcCCCc-ccccCcccccCCCcccEEEccCCccccccchhhhccCCCCEEEccCCcCcCCCChHhhhcCccceEE
Q 039528            5 KNLFELNLKGNN-VEGHLPNCLKYLSHLKVFDISQNQLSGSLSSTITSLTSLEYLDLSYNNFEGPCPLSLLAHHSKLEVL   83 (136)
Q Consensus         5 ~~L~~l~l~~~~-l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~~l~~l   83 (136)
                      ++|++|++++|. +....+..+..+++|++|++++|.+++..+..+..+++|++|++++|.+.+ .+...+..+++|+++
T Consensus        80 ~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~-~~~~~~~~l~~L~~L  158 (285)
T 1ozn_A           80 ALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQA-LPDDTFRDLGNLTHL  158 (285)
T ss_dssp             TTCCEEECCSCTTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCC-CCTTTTTTCTTCCEE
T ss_pred             cCCCEEeCCCCCCccccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccc-cCHhHhccCCCccEE
Confidence            334444444433 332223333344444444444444433333334444444444444444432 222223344444444


Q ss_pred             Eeccceeeecc--CCCCCccccEEEcCCCCCCCC-ChhhhcCCCCcEEEcCCCc
Q 039528           84 VLSSTILVKTE--NFLPTFQLKELGLANCSLNVV-PTFLLHQYDLKYLDLSHNN  134 (136)
Q Consensus        84 ~l~~~~~~~~~--~~~~~~~L~~l~l~~n~~~~~-~~~~~~~~~L~~l~l~~n~  134 (136)
                      ++++|.+...+  .+..+++|+.|++++|.++.+ |..+..+++|+.|++++|.
T Consensus       159 ~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~  212 (285)
T 1ozn_A          159 FLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANN  212 (285)
T ss_dssp             ECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSC
T ss_pred             ECCCCcccccCHHHhcCccccCEEECCCCcccccCHhHccCcccccEeeCCCCc
Confidence            44444333322  123333444444444444222 3334444444444444443

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=99.84  E-value=7.2e-20  Score=118.12  Aligned_cols=131  Identities=28%  Similarity=0.270  Sum_probs=97.9

Q ss_pred             CCCcccEEEcCCCcccccCcccccCCCcccEEEccCCccccccchhhhccCCCCEEEccCCcCcCCCChHhhhcCccceE
Q 039528            3 ELKNLFELNLKGNNVEGHLPNCLKYLSHLKVFDISQNQLSGSLSSTITSLTSLEYLDLSYNNFEGPCPLSLLAHHSKLEV   82 (136)
Q Consensus         3 ~l~~L~~l~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~~l~~   82 (136)
                      .+++|++|++++|.+. .+|..+..+++|++|++++|.+++..+..|..+++|++|++++|+++ .++...+..+++|+.
T Consensus        75 ~l~~L~~L~Ls~N~l~-~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~-~~~~~~~~~l~~L~~  152 (290)
T 1p9a_G           75 TLPVLGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELK-TLPPGLLTPTPKLEK  152 (290)
T ss_dssp             CCTTCCEEECCSSCCS-SCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCC-CCCTTTTTTCTTCCE
T ss_pred             CCCcCCEEECCCCcCC-cCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCC-ccChhhcccccCCCE
Confidence            3566777777777776 56666777788888888888887666667777888888888888887 445455677788888


Q ss_pred             EEeccceeeecc--CCCCCccccEEEcCCCCCCCCChhhhcCCCCcEEEcCCCcC
Q 039528           83 LVLSSTILVKTE--NFLPTFQLKELGLANCSLNVVPTFLLHQYDLKYLDLSHNNL  135 (136)
Q Consensus        83 l~l~~~~~~~~~--~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~L~~l~l~~n~l  135 (136)
                      +++++|.+...+  .+..+++|+.|++++|.++.+|..+....+|+.+++++|++
T Consensus       153 L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~ip~~~~~~~~L~~l~L~~Np~  207 (290)
T 1p9a_G          153 LSLANNNLTELPAGLLNGLENLDTLLLQENSLYTIPKGFFGSHLLPFAFLHGNPW  207 (290)
T ss_dssp             EECTTSCCSCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCCCSEEECCSCCB
T ss_pred             EECCCCcCCccCHHHhcCcCCCCEEECCCCcCCccChhhcccccCCeEEeCCCCc
Confidence            888888776554  34556788888888888888888777778888888888875

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=99.84  E-value=1.1e-19  Score=116.72  Aligned_cols=132  Identities=24%  Similarity=0.224  Sum_probs=81.4

Q ss_pred             CCCcccEEEcCCCcccccCcccccCCCcccEEEccCCc-cccccchhhhccCCCCEEEccCCcCcCCCChHhhhcCccce
Q 039528            3 ELKNLFELNLKGNNVEGHLPNCLKYLSHLKVFDISQNQ-LSGSLSSTITSLTSLEYLDLSYNNFEGPCPLSLLAHHSKLE   81 (136)
Q Consensus         3 ~l~~L~~l~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~-~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~~l~   81 (136)
                      .+++|++|++++|.+++..+..+..+++|++|++++|. +....+..+..+++|++|++++|.+.+..+ ..+..+++|+
T Consensus        54 ~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~-~~~~~l~~L~  132 (285)
T 1ozn_A           54 ACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGP-GLFRGLAALQ  132 (285)
T ss_dssp             TCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEEECTTSCCCCCCT-TTTTTCTTCC
T ss_pred             cCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCCccccCHHHhcCCcCCCEEECCCCcCCEECH-hHhhCCcCCC
Confidence            45566666666666665555566666666666666664 554445556666666666666666653323 3355666677


Q ss_pred             EEEeccceeeecc--CCCCCccccEEEcCCCCCCCCCh-hhhcCCCCcEEEcCCCcC
Q 039528           82 VLVLSSTILVKTE--NFLPTFQLKELGLANCSLNVVPT-FLLHQYDLKYLDLSHNNL  135 (136)
Q Consensus        82 ~l~l~~~~~~~~~--~~~~~~~L~~l~l~~n~~~~~~~-~~~~~~~L~~l~l~~n~l  135 (136)
                      ++++++|.+...+  .+..+++|+.|++++|.++.++. .+..+++|+.|++++|.+
T Consensus       133 ~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l  189 (285)
T 1ozn_A          133 YLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRV  189 (285)
T ss_dssp             EEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCC
T ss_pred             EEECCCCcccccCHhHhccCCCccEEECCCCcccccCHHHhcCccccCEEECCCCcc
Confidence            7777666655443  24555667777777777765554 466677777777777665

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=99.83  E-value=3.6e-20  Score=120.60  Aligned_cols=133  Identities=24%  Similarity=0.342  Sum_probs=89.5

Q ss_pred             CCCcccEEEcCCCcccccCcccccCCCcccEEEccCCccccccchhhhccC-CCCEEEccCCcCcCCCCh----------
Q 039528            3 ELKNLFELNLKGNNVEGHLPNCLKYLSHLKVFDISQNQLSGSLSSTITSLT-SLEYLDLSYNNFEGPCPL----------   71 (136)
Q Consensus         3 ~l~~L~~l~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~-~l~~l~l~~~~~~~~~~~----------   71 (136)
                      .+++|++|++++|.+.+..|..+..+++|++|++++|.+++..|..+..+. .|++|++++|.+.+..|.          
T Consensus       123 ~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~L~~L  202 (313)
T 1ogq_A          123 QIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNLAFV  202 (313)
T ss_dssp             GCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCCCSEE
T ss_pred             CCCCCCEEeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCcccEE
Confidence            456677777777777766677777777777777777777666666666665 666666666666544332          


Q ss_pred             ------------HhhhcCccceEEEeccceeee-ccCCCCCccccEEEcCCCCC-CCCChhhhcCCCCcEEEcCCCcC
Q 039528           72 ------------SLLAHHSKLEVLVLSSTILVK-TENFLPTFQLKELGLANCSL-NVVPTFLLHQYDLKYLDLSHNNL  135 (136)
Q Consensus        72 ------------~~~~~~~~l~~l~l~~~~~~~-~~~~~~~~~L~~l~l~~n~~-~~~~~~~~~~~~L~~l~l~~n~l  135 (136)
                                  ..+..+++|+.+++++|.+.. .+.+..+++|++|++++|.+ +.+|..+..+++|++|++++|.+
T Consensus       203 ~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l  280 (313)
T 1ogq_A          203 DLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNL  280 (313)
T ss_dssp             ECCSSEEEECCGGGCCTTSCCSEEECCSSEECCBGGGCCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEE
T ss_pred             ECcCCcccCcCCHHHhcCCCCCEEECCCCceeeecCcccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCcc
Confidence                        224445556666666655432 22345556788888888888 47888888888888998888875

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=99.83  E-value=5.2e-20  Score=109.98  Aligned_cols=130  Identities=23%  Similarity=0.220  Sum_probs=113.2

Q ss_pred             CCCcccEEEcCCCccc-ccCcccccCCCcccEEEccCCccccccchhhhccCCCCEEEccCCcCcCCCChHhhhcCccce
Q 039528            3 ELKNLFELNLKGNNVE-GHLPNCLKYLSHLKVFDISQNQLSGSLSSTITSLTSLEYLDLSYNNFEGPCPLSLLAHHSKLE   81 (136)
Q Consensus         3 ~l~~L~~l~l~~~~l~-~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~~l~   81 (136)
                      ..+++++|++++|.++ +.+|..+..+++|++|++++|.+++.  ..+..+++|++|++++|.+.+.++ ..+..+++|+
T Consensus        22 ~~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~-~~~~~l~~L~   98 (168)
T 2ell_A           22 TPAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLD-MLAEKLPNLT   98 (168)
T ss_dssp             CTTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCC-HHHHHCTTCC
T ss_pred             CcccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHH-HHHhhCCCCC
Confidence            3578999999999998 67788889999999999999999865  778889999999999999986566 4477799999


Q ss_pred             EEEeccceeeecc---CCCCCccccEEEcCCCCCCCCCh----hhhcCCCCcEEEcCCCcC
Q 039528           82 VLVLSSTILVKTE---NFLPTFQLKELGLANCSLNVVPT----FLLHQYDLKYLDLSHNNL  135 (136)
Q Consensus        82 ~l~l~~~~~~~~~---~~~~~~~L~~l~l~~n~~~~~~~----~~~~~~~L~~l~l~~n~l  135 (136)
                      ++++++|.+...+   .+..+++|++|++++|.++.++.    .+..+++|++|++++|.+
T Consensus        99 ~L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~  159 (168)
T 2ell_A           99 HLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDRED  159 (168)
T ss_dssp             EEECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTS
T ss_pred             EEeccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCCh
Confidence            9999999887753   55778899999999999977776    788999999999998875

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=99.83  E-value=3.6e-20  Score=121.36  Aligned_cols=129  Identities=22%  Similarity=0.273  Sum_probs=74.8

Q ss_pred             CCcccEEEcCCCcccccCcccccCCCcccEEEccCCccccccchhhhccCCCCEEEccCCcCcCCCChHh--------hh
Q 039528            4 LKNLFELNLKGNNVEGHLPNCLKYLSHLKVFDISQNQLSGSLSSTITSLTSLEYLDLSYNNFEGPCPLSL--------LA   75 (136)
Q Consensus         4 l~~L~~l~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~--------~~   75 (136)
                      +++|++|++++|.+. .+|..+..+++|++|++++|.++ .+|..+..+++|++|++++|...+.+|...        +.
T Consensus       103 l~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L~L~~n~~~~~~p~~~~~~~~~~~~~  180 (328)
T 4fcg_A          103 LSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLRELSIRACPELTELPEPLASTDASGEHQ  180 (328)
T ss_dssp             GTTCSEEEEESSCCC-CCCSCGGGGTTCSEEEEESCCCC-CCCGGGGGCTTCCEEEEEEETTCCCCCSCSEEEC-CCCEE
T ss_pred             CCCCCEEECCCCCcc-chhHHHhccCCCCEEECCCCccc-cCcHHHhcCcCCCEEECCCCCCccccChhHhhccchhhhc
Confidence            456666666666666 56666666666666666666665 556666666666666666655554444321        11


Q ss_pred             cCccceEEEeccceeeecc-CCCCCccccEEEcCCCCCCCCChhhhcCCCCcEEEcCCCc
Q 039528           76 HHSKLEVLVLSSTILVKTE-NFLPTFQLKELGLANCSLNVVPTFLLHQYDLKYLDLSHNN  134 (136)
Q Consensus        76 ~~~~l~~l~l~~~~~~~~~-~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~L~~l~l~~n~  134 (136)
                      .+++|+++++++|.+...+ .+..+++|++|++++|.++.+|..++.+++|++|++++|.
T Consensus       181 ~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~N~l~~l~~~l~~l~~L~~L~Ls~n~  240 (328)
T 4fcg_A          181 GLVNLQSLRLEWTGIRSLPASIANLQNLKSLKIRNSPLSALGPAIHHLPKLEELDLRGCT  240 (328)
T ss_dssp             ESTTCCEEEEEEECCCCCCGGGGGCTTCCEEEEESSCCCCCCGGGGGCTTCCEEECTTCT
T ss_pred             cCCCCCEEECcCCCcCcchHhhcCCCCCCEEEccCCCCCcCchhhccCCCCCEEECcCCc
Confidence            2555666666665554333 2344445566666666665555555555556666665554

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=99.83  E-value=2.3e-19  Score=114.70  Aligned_cols=132  Identities=28%  Similarity=0.316  Sum_probs=111.2

Q ss_pred             CCCCcccEEEcCCCcccccCcccccCCCcccEEEccCCccccccchhhhccCCCCEEEccCCcCcCCCChHhhhcCccce
Q 039528            2 CELKNLFELNLKGNNVEGHLPNCLKYLSHLKVFDISQNQLSGSLSSTITSLTSLEYLDLSYNNFEGPCPLSLLAHHSKLE   81 (136)
Q Consensus         2 ~~l~~L~~l~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~~l~   81 (136)
                      ..+++|++|++++|.+.+ . ..+..+++|++|++++|.+++..+..+..+++|++|++++|.+++ .+...+..+++|+
T Consensus        60 ~~l~~L~~L~l~~n~l~~-~-~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~-~~~~~~~~l~~L~  136 (272)
T 3rfs_A           60 QYLPNVRYLALGGNKLHD-I-SALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQS-LPDGVFDKLTNLT  136 (272)
T ss_dssp             GGCTTCCEEECTTSCCCC-C-GGGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCC-CCTTTTTTCTTCC
T ss_pred             ccCCCCcEEECCCCCCCC-c-hhhcCCCCCCEEECCCCccCccChhHhcCCcCCCEEECCCCcCCc-cCHHHhccCCCCC
Confidence            357889999999999885 3 468889999999999999987777778899999999999999984 4445578899999


Q ss_pred             EEEeccceeeeccC--CCCCccccEEEcCCCCCCCCCh-hhhcCCCCcEEEcCCCcCC
Q 039528           82 VLVLSSTILVKTEN--FLPTFQLKELGLANCSLNVVPT-FLLHQYDLKYLDLSHNNLV  136 (136)
Q Consensus        82 ~l~l~~~~~~~~~~--~~~~~~L~~l~l~~n~~~~~~~-~~~~~~~L~~l~l~~n~l~  136 (136)
                      ++++++|.+...+.  +..+++|+.|++++|.++.++. .++.+++|+.|++++|.++
T Consensus       137 ~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~  194 (272)
T 3rfs_A          137 YLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLK  194 (272)
T ss_dssp             EEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCS
T ss_pred             EEECCCCccCccCHHHhccCccCCEEECCCCCcCccCHHHhcCCccCCEEECCCCcCC
Confidence            99999998876653  5677899999999999976665 5688999999999999874

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=99.83  E-value=2.7e-20  Score=121.24  Aligned_cols=87  Identities=26%  Similarity=0.465  Sum_probs=46.3

Q ss_pred             CCCcccEEEcCC-CcccccCcccccCCCcccEEEccCCccccccchhhhccCCCCEEEccCCcCcCCCChHhhhcCccce
Q 039528            3 ELKNLFELNLKG-NNVEGHLPNCLKYLSHLKVFDISQNQLSGSLSSTITSLTSLEYLDLSYNNFEGPCPLSLLAHHSKLE   81 (136)
Q Consensus         3 ~l~~L~~l~l~~-~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~~l~   81 (136)
                      ++++|++|++++ |.+.+..|..+..+++|++|++++|.+++..|..+..+++|++|++++|.+.+..|.. +..+++|+
T Consensus        74 ~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~-~~~l~~L~  152 (313)
T 1ogq_A           74 NLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPS-ISSLPNLV  152 (313)
T ss_dssp             GCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEESCCCGG-GGGCTTCC
T ss_pred             CCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCEEeCCCCccCCcCChH-HhcCCCCC
Confidence            345555555553 5555555555555555555555555555455555555555555555555555444432 44455555


Q ss_pred             EEEecccee
Q 039528           82 VLVLSSTIL   90 (136)
Q Consensus        82 ~l~l~~~~~   90 (136)
                      ++++++|.+
T Consensus       153 ~L~L~~N~l  161 (313)
T 1ogq_A          153 GITFDGNRI  161 (313)
T ss_dssp             EEECCSSCC
T ss_pred             eEECcCCcc
Confidence            555555444

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=99.83  E-value=2e-19  Score=115.14  Aligned_cols=131  Identities=25%  Similarity=0.253  Sum_probs=108.7

Q ss_pred             CcccEEEcCCCcccccCcccccCCCcccEEEccCCccccccchhhhccCCCCEEEccCCcCcCCCChHhhhcCccceEEE
Q 039528            5 KNLFELNLKGNNVEGHLPNCLKYLSHLKVFDISQNQLSGSLSSTITSLTSLEYLDLSYNNFEGPCPLSLLAHHSKLEVLV   84 (136)
Q Consensus         5 ~~L~~l~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~~l~~l~   84 (136)
                      +++++|++++|.+++..+..+..+++|++|++++|.+++..+..+..+++|++|++++|.+.+. +...+..+++|++++
T Consensus        28 ~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~-~~~~~~~l~~L~~L~  106 (276)
T 2z62_A           28 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSL-ALGAFSGLSSLQKLV  106 (276)
T ss_dssp             TTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEE-CTTTTTTCTTCCEEE
T ss_pred             CCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCcc-ChhhhcCCccccEEE
Confidence            3589999999999877777888999999999999998876677888899999999999998744 334577889999999


Q ss_pred             eccceeeecc--CCCCCccccEEEcCCCCCCC--CChhhhcCCCCcEEEcCCCcCC
Q 039528           85 LSSTILVKTE--NFLPTFQLKELGLANCSLNV--VPTFLLHQYDLKYLDLSHNNLV  136 (136)
Q Consensus        85 l~~~~~~~~~--~~~~~~~L~~l~l~~n~~~~--~~~~~~~~~~L~~l~l~~n~l~  136 (136)
                      +++|.+...+  .+..+++|++|++++|.++.  +|..++.+++|+.|++++|.++
T Consensus       107 l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~  162 (276)
T 2z62_A          107 AVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQ  162 (276)
T ss_dssp             CTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCC
T ss_pred             CCCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCC
Confidence            9998776654  35677789999999999954  6788899999999999998764

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=99.82  E-value=2e-19  Score=119.16  Aligned_cols=130  Identities=29%  Similarity=0.312  Sum_probs=107.9

Q ss_pred             cccEEEcCCCcccccCccccc-CCCcccEEEccCCccccccchhhhccCCCCEEEccCCcCcCCCChHhhhcCccceEEE
Q 039528            6 NLFELNLKGNNVEGHLPNCLK-YLSHLKVFDISQNQLSGSLSSTITSLTSLEYLDLSYNNFEGPCPLSLLAHHSKLEVLV   84 (136)
Q Consensus         6 ~L~~l~l~~~~l~~~~~~~~~-~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~~l~~l~   84 (136)
                      .++.|++++|.+++..+..+. .+++|++|++++|.+++..+..|..+++|++|++++|++. .++...+..+++|+.|+
T Consensus        40 ~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~-~~~~~~~~~l~~L~~L~  118 (361)
T 2xot_A           40 YTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNHLH-TLDEFLFSDLQALEVLL  118 (361)
T ss_dssp             TCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCC-EECTTTTTTCTTCCEEE
T ss_pred             CCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCCCcCC-cCCHHHhCCCcCCCEEE
Confidence            478899999999977777777 8999999999999998777778889999999999999997 45545688899999999


Q ss_pred             eccceeeecc--CCCCCccccEEEcCCCCCCCCChhh----hcCCCCcEEEcCCCcCC
Q 039528           85 LSSTILVKTE--NFLPTFQLKELGLANCSLNVVPTFL----LHQYDLKYLDLSHNNLV  136 (136)
Q Consensus        85 l~~~~~~~~~--~~~~~~~L~~l~l~~n~~~~~~~~~----~~~~~L~~l~l~~n~l~  136 (136)
                      +++|.+....  .+..+.+|+.|++++|.++.+|..+    ..+++|+.|++++|.++
T Consensus       119 L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l~  176 (361)
T 2xot_A          119 LYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLK  176 (361)
T ss_dssp             CCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSSCCC
T ss_pred             CCCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCCCC
Confidence            9998886653  5677889999999999998888754    56889999999998874

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=99.82  E-value=1.1e-19  Score=106.54  Aligned_cols=127  Identities=24%  Similarity=0.271  Sum_probs=109.8

Q ss_pred             CCCcccEEEcCCCccc-ccCcccccCCCcccEEEccCCccccccchhhhccCCCCEEEccCCcCcCCCChHhhhcCccce
Q 039528            3 ELKNLFELNLKGNNVE-GHLPNCLKYLSHLKVFDISQNQLSGSLSSTITSLTSLEYLDLSYNNFEGPCPLSLLAHHSKLE   81 (136)
Q Consensus         3 ~l~~L~~l~l~~~~l~-~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~~l~   81 (136)
                      ..++++.+++++|.++ +.+|..+..+++|++|++++|.+++.  ..+..+++|++|++++|.+++.+| ..+..+++|+
T Consensus        15 ~~~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~-~~~~~l~~L~   91 (149)
T 2je0_A           15 TPSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLE-VLAEKCPNLT   91 (149)
T ss_dssp             CGGGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTH-HHHHHCTTCC
T ss_pred             CCccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHH-HHhhhCCCCC
Confidence            3577999999999998 67888889999999999999999865  778889999999999999986555 4577799999


Q ss_pred             EEEeccceeeec---cCCCCCccccEEEcCCCCCCCCCh----hhhcCCCCcEEEcCC
Q 039528           82 VLVLSSTILVKT---ENFLPTFQLKELGLANCSLNVVPT----FLLHQYDLKYLDLSH  132 (136)
Q Consensus        82 ~l~l~~~~~~~~---~~~~~~~~L~~l~l~~n~~~~~~~----~~~~~~~L~~l~l~~  132 (136)
                      ++++++|.+...   ..+..+++|++|++++|.++.++.    .+..+++|+.|++++
T Consensus        92 ~L~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~d  149 (149)
T 2je0_A           92 HLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGYD  149 (149)
T ss_dssp             EEECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTBC
T ss_pred             EEECCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCCC
Confidence            999999988764   456777899999999999977775    788999999999864

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=99.82  E-value=2.1e-19  Score=121.68  Aligned_cols=133  Identities=23%  Similarity=0.245  Sum_probs=70.8

Q ss_pred             CCCCcccEEEcCCCcccccCcccccCCCcccEEEccCCccccccchhhhccCCCCEEEccCCcCcC--------------
Q 039528            2 CELKNLFELNLKGNNVEGHLPNCLKYLSHLKVFDISQNQLSGSLSSTITSLTSLEYLDLSYNNFEG--------------   67 (136)
Q Consensus         2 ~~l~~L~~l~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~--------------   67 (136)
                      .++++|++|++++|.+....+..|.++++|++|++++|.++...+..+..+++|++|++++|.+..              
T Consensus        85 ~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~  164 (440)
T 3zyj_A           85 KHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRR  164 (440)
T ss_dssp             SSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSCCSSCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCE
T ss_pred             hCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCCcCCeeCHhHhhccccCceeeCCCCcccccCHHHhhhCcccCE
Confidence            345666666666666665555666666666666666666654444455556666666666655542              


Q ss_pred             ----------CCChHhhhcCccceEEEeccceeeeccCCCCCccccEEEcCCCCCCCC-ChhhhcCCCCcEEEcCCCc
Q 039528           68 ----------PCPLSLLAHHSKLEVLVLSSTILVKTENFLPTFQLKELGLANCSLNVV-PTFLLHQYDLKYLDLSHNN  134 (136)
Q Consensus        68 ----------~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~-~~~~~~~~~L~~l~l~~n~  134 (136)
                                .++...+..+++|+++++++|.+...+.+..+.+|+.|++++|.++.+ |..+..+++|+.|++++|.
T Consensus       165 L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~  242 (440)
T 3zyj_A          165 LDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLREIPNLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQ  242 (440)
T ss_dssp             EECCCCTTCCEECTTTTTTCSSCCEEECTTSCCSSCCCCTTCSSCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCC
T ss_pred             eCCCCCCCcceeCcchhhcccccCeecCCCCcCccccccCCCcccCEEECCCCccCccChhhhccCccCCEEECCCCc
Confidence                      222223444445555555555444444444444555555555555333 3344444444444444443

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=99.82  E-value=2.4e-19  Score=121.77  Aligned_cols=133  Identities=22%  Similarity=0.205  Sum_probs=75.1

Q ss_pred             CCCCcccEEEcCCCcccccCcccccCCCcccEEEccCCccccccchhhhccCCCCEEEccCCcCcCCCChH---------
Q 039528            2 CELKNLFELNLKGNNVEGHLPNCLKYLSHLKVFDISQNQLSGSLSSTITSLTSLEYLDLSYNNFEGPCPLS---------   72 (136)
Q Consensus         2 ~~l~~L~~l~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~---------   72 (136)
                      .++++|+.|++++|.+++..+..|.++++|++|++++|.++...+..+..+++|++|++++|.+. .++..         
T Consensus        96 ~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~-~~~~~~~~~l~~L~  174 (452)
T 3zyi_A           96 RHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWLRNNPIE-SIPSYAFNRVPSLM  174 (452)
T ss_dssp             TTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSBCCTTTSSSCTTCCEEECCSCCCC-EECTTTTTTCTTCC
T ss_pred             CCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCCcCCccChhhhcccCCCCEEECCCCCcc-eeCHhHHhcCCccc
Confidence            45666777777777777666666666777777777777666544455666666666666666654 22222         


Q ss_pred             ----------------hhhcCccceEEEeccceeeeccCCCCCccccEEEcCCCCCCCC-ChhhhcCCCCcEEEcCCCcC
Q 039528           73 ----------------LLAHHSKLEVLVLSSTILVKTENFLPTFQLKELGLANCSLNVV-PTFLLHQYDLKYLDLSHNNL  135 (136)
Q Consensus        73 ----------------~~~~~~~l~~l~l~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~-~~~~~~~~~L~~l~l~~n~l  135 (136)
                                      .+..+++|+++++++|.+...+.+..+.+|+.|++++|.++.+ |..+..+++|+.|++++|.+
T Consensus       175 ~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l  254 (452)
T 3zyi_A          175 RLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDMPNLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQV  254 (452)
T ss_dssp             EEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSSCCCCTTCTTCCEEECTTSCCSEECGGGGTTCTTCCEEECTTSCC
T ss_pred             EEeCCCCCCccccChhhccCCCCCCEEECCCCcccccccccccccccEEECcCCcCcccCcccccCccCCCEEEeCCCcC
Confidence                            2334445555555555444444444444555555555555333 33444455555555554443

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=99.81  E-value=2.4e-19  Score=128.53  Aligned_cols=131  Identities=28%  Similarity=0.369  Sum_probs=71.7

Q ss_pred             CCcccEEEcCCCcccccCcccccCCCcccEEEccCCccccccchhhhccCCCCEEEccCCcCcCCCChHhhhcCccceEE
Q 039528            4 LKNLFELNLKGNNVEGHLPNCLKYLSHLKVFDISQNQLSGSLSSTITSLTSLEYLDLSYNNFEGPCPLSLLAHHSKLEVL   83 (136)
Q Consensus         4 l~~L~~l~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~~l~~l   83 (136)
                      +++|++|++++|.+++..|..+..+++|++|++++|.+.+..|..+..+++|++|++++|++.+..|.. +..+++|+.+
T Consensus       417 l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~-l~~l~~L~~L  495 (768)
T 3rgz_A          417 CSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSG-LSNCTNLNWI  495 (768)
T ss_dssp             CTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGG-GGGCTTCCEE
T ss_pred             CCCCCEEECcCCcccCcccHHHhcCCCCCEEECCCCcccCcCCHHHcCCCCceEEEecCCcccCcCCHH-HhcCCCCCEE
Confidence            444555555555555555555555555555555555555555555555555555555555555444433 4555556666


Q ss_pred             Eeccceee-ecc-CCCCCccccEEEcCCCCC-CCCChhhhcCCCCcEEEcCCCcC
Q 039528           84 VLSSTILV-KTE-NFLPTFQLKELGLANCSL-NVVPTFLLHQYDLKYLDLSHNNL  135 (136)
Q Consensus        84 ~l~~~~~~-~~~-~~~~~~~L~~l~l~~n~~-~~~~~~~~~~~~L~~l~l~~n~l  135 (136)
                      ++++|.+. ..+ .+..+++|+.|++++|.+ +.+|..++.+++|+.|++++|.+
T Consensus       496 ~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l  550 (768)
T 3rgz_A          496 SLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLF  550 (768)
T ss_dssp             ECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSEE
T ss_pred             EccCCccCCcCChHHhcCCCCCEEECCCCcccCcCCHHHcCCCCCCEEECCCCcc
Confidence            66655543 222 234445666666666666 45666666666666666666543

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=99.81  E-value=6.6e-19  Score=126.28  Aligned_cols=85  Identities=32%  Similarity=0.459  Sum_probs=43.3

Q ss_pred             CCcccEEEcCCCcccccCcccccCCCcccEEEccCCccccccchhhhccCCCCEEEccCCcCcCCCChHhhhcCccceEE
Q 039528            4 LKNLFELNLKGNNVEGHLPNCLKYLSHLKVFDISQNQLSGSLSSTITSLTSLEYLDLSYNNFEGPCPLSLLAHHSKLEVL   83 (136)
Q Consensus         4 l~~L~~l~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~~l~~l   83 (136)
                      +++|+.|++++|.+.+..|..+..+++|++|++++|.+++..|..+..+++|++|++++|.+++.+|.. +..+++|+.+
T Consensus       465 l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~-l~~l~~L~~L  543 (768)
T 3rgz_A          465 VKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAE-LGDCRSLIWL  543 (768)
T ss_dssp             CTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGG-GGGCTTCCEE
T ss_pred             CCCceEEEecCCcccCcCCHHHhcCCCCCEEEccCCccCCcCChHHhcCCCCCEEECCCCcccCcCCHH-HcCCCCCCEE
Confidence            344555555555555445555555555555555555555445555555555555555555554444432 4445555555


Q ss_pred             Eeccce
Q 039528           84 VLSSTI   89 (136)
Q Consensus        84 ~l~~~~   89 (136)
                      ++++|.
T Consensus       544 ~Ls~N~  549 (768)
T 3rgz_A          544 DLNTNL  549 (768)
T ss_dssp             ECCSSE
T ss_pred             ECCCCc
Confidence            555443

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=99.81  E-value=2.2e-19  Score=116.40  Aligned_cols=132  Identities=24%  Similarity=0.331  Sum_probs=73.5

Q ss_pred             CCCcccEEEcCCCcccccCcccccCCCcccEEEccCCcccc-ccchhhhccCCCCEEEccCCcCcCCCChHhhhcCccce
Q 039528            3 ELKNLFELNLKGNNVEGHLPNCLKYLSHLKVFDISQNQLSG-SLSSTITSLTSLEYLDLSYNNFEGPCPLSLLAHHSKLE   81 (136)
Q Consensus         3 ~l~~L~~l~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~-~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~~l~   81 (136)
                      .+++|++|++++|.+.+..+..+..+++|++|++++|.+.+ ..|..+..+++|++|++++|.+.+..+ ..+..+++|+
T Consensus       124 ~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-~~~~~l~~L~  202 (306)
T 2z66_A          124 SLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSP-TAFNSLSSLQ  202 (306)
T ss_dssp             TCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECT-TTTTTCTTCC
T ss_pred             hccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCccccccchhHHhhCcCCCEEECCCCCcCCcCH-HHhcCCCCCC
Confidence            34555555555555555555555555666666666655543 345555556666666666666653323 2355566666


Q ss_pred             EEEeccceeeecc--CCCCCccccEEEcCCCCC-CCCChhhhcCC-CCcEEEcCCCcC
Q 039528           82 VLVLSSTILVKTE--NFLPTFQLKELGLANCSL-NVVPTFLLHQY-DLKYLDLSHNNL  135 (136)
Q Consensus        82 ~l~l~~~~~~~~~--~~~~~~~L~~l~l~~n~~-~~~~~~~~~~~-~L~~l~l~~n~l  135 (136)
                      ++++++|.+...+  .+..+++|+.|++++|.+ +..+..+..++ +|++|++++|++
T Consensus       203 ~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~L~~N~~  260 (306)
T 2z66_A          203 VLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDF  260 (306)
T ss_dssp             EEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCCBCSSSSCCCCCTTCCEEECTTCCE
T ss_pred             EEECCCCccCccChhhccCcccCCEeECCCCCCcccCHHHHHhhhccCCEEEccCCCe
Confidence            6666666554443  234455666666666666 33344555553 666666666654

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=99.81  E-value=1.4e-19  Score=118.55  Aligned_cols=105  Identities=25%  Similarity=0.256  Sum_probs=61.8

Q ss_pred             CCcccEEEccCCccccccchhhhccCCCCEEEccCCcCcCCCChHhhhcCccceEEEecccee-eecc-CCCCCccccEE
Q 039528           28 LSHLKVFDISQNQLSGSLSSTITSLTSLEYLDLSYNNFEGPCPLSLLAHHSKLEVLVLSSTIL-VKTE-NFLPTFQLKEL  105 (136)
Q Consensus        28 l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~-~~~~-~~~~~~~L~~l  105 (136)
                      +++|++|++++|.++ .+|..+..+++|++|++++|.+. .++.. +..+++|+++++++|.+ ...+ .+..+++|+.|
T Consensus       182 l~~L~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~N~l~-~l~~~-l~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L  258 (328)
T 4fcg_A          182 LVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLS-ALGPA-IHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRL  258 (328)
T ss_dssp             STTCCEEEEEEECCC-CCCGGGGGCTTCCEEEEESSCCC-CCCGG-GGGCTTCCEEECTTCTTCCBCCCCTTCCCCCCEE
T ss_pred             CCCCCEEECcCCCcC-cchHhhcCCCCCCEEEccCCCCC-cCchh-hccCCCCCEEECcCCcchhhhHHHhcCCCCCCEE
Confidence            444444444444444 44455555666666666666665 34433 55666666666666433 2222 34555677777


Q ss_pred             EcCCCCC-CCCChhhhcCCCCcEEEcCCCcC
Q 039528          106 GLANCSL-NVVPTFLLHQYDLKYLDLSHNNL  135 (136)
Q Consensus       106 ~l~~n~~-~~~~~~~~~~~~L~~l~l~~n~l  135 (136)
                      ++++|.+ +.+|..+..+++|+.|++++|.+
T Consensus       259 ~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~  289 (328)
T 4fcg_A          259 ILKDCSNLLTLPLDIHRLTQLEKLDLRGCVN  289 (328)
T ss_dssp             ECTTCTTCCBCCTTGGGCTTCCEEECTTCTT
T ss_pred             ECCCCCchhhcchhhhcCCCCCEEeCCCCCc
Confidence            7777666 66777777777777777777654

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=99.81  E-value=6.3e-19  Score=113.71  Aligned_cols=130  Identities=32%  Similarity=0.371  Sum_probs=85.2

Q ss_pred             CCCcccEEEcCCCcccccCcccccCCCcccEEEccCCccccccchhhhccCCCCEEEccCCcCcCCCChHhhhcCccceE
Q 039528            3 ELKNLFELNLKGNNVEGHLPNCLKYLSHLKVFDISQNQLSGSLSSTITSLTSLEYLDLSYNNFEGPCPLSLLAHHSKLEV   82 (136)
Q Consensus         3 ~l~~L~~l~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~~l~~   82 (136)
                      .+++|+.|++++|.+++..+.  ..+++|++|++++|.++ .+|..+..+++|++|++++|++++ ++...+..+++|++
T Consensus        53 ~l~~L~~L~L~~n~l~~~~~~--~~l~~L~~L~Ls~N~l~-~l~~~~~~l~~L~~L~l~~N~l~~-l~~~~~~~l~~L~~  128 (290)
T 1p9a_G           53 PYTRLTQLNLDRAELTKLQVD--GTLPVLGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTS-LPLGALRGLGELQE  128 (290)
T ss_dssp             TCTTCCEEECTTSCCCEEECC--SCCTTCCEEECCSSCCS-SCCCCTTTCTTCCEEECCSSCCCC-CCSSTTTTCTTCCE
T ss_pred             cCCCCCEEECCCCccCcccCC--CCCCcCCEEECCCCcCC-cCchhhccCCCCCEEECCCCcCcc-cCHHHHcCCCCCCE
Confidence            344555555555555432211  44555666666666555 445556677777888888887773 44345777788888


Q ss_pred             EEeccceeeecc--CCCCCccccEEEcCCCCCCCCCh-hhhcCCCCcEEEcCCCcCC
Q 039528           83 LVLSSTILVKTE--NFLPTFQLKELGLANCSLNVVPT-FLLHQYDLKYLDLSHNNLV  136 (136)
Q Consensus        83 l~l~~~~~~~~~--~~~~~~~L~~l~l~~n~~~~~~~-~~~~~~~L~~l~l~~n~l~  136 (136)
                      +++++|.+...+  .+..+++|+.|++++|.++.+|. .+..+++|+.|++++|.++
T Consensus       129 L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~  185 (290)
T 1p9a_G          129 LYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLY  185 (290)
T ss_dssp             EECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCC
T ss_pred             EECCCCCCCccChhhcccccCCCEEECCCCcCCccCHHHhcCcCCCCEEECCCCcCC
Confidence            888887766554  34566788888888888877775 4567888888888888764

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=99.81  E-value=7.4e-19  Score=119.21  Aligned_cols=131  Identities=24%  Similarity=0.253  Sum_probs=116.4

Q ss_pred             CcccEEEcCCCcccccCcccccCCCcccEEEccCCccccccchhhhccCCCCEEEccCCcCcCCCChHhhhcCccceEEE
Q 039528            5 KNLFELNLKGNNVEGHLPNCLKYLSHLKVFDISQNQLSGSLSSTITSLTSLEYLDLSYNNFEGPCPLSLLAHHSKLEVLV   84 (136)
Q Consensus         5 ~~L~~l~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~~l~~l~   84 (136)
                      ++|+.+++++|.+.+..|..+..+++|++|++++|.+++..+..+..+++|++|++++|.+.+ .+...+..+++|++++
T Consensus       275 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~-~~~~~~~~l~~L~~L~  353 (455)
T 3v47_A          275 SGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGS-IDSRMFENLDKLEVLD  353 (455)
T ss_dssp             SCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCE-ECGGGGTTCTTCCEEE
T ss_pred             cCceEEEecCccccccchhhcccCCCCCEEECCCCcccccChhHhcCcccCCEEECCCCccCC-cChhHhcCcccCCEEE
Confidence            579999999999998889999999999999999999998888899999999999999999974 4445588899999999


Q ss_pred             eccceeeecc--CCCCCccccEEEcCCCCCCCCCh-hhhcCCCCcEEEcCCCcCC
Q 039528           85 LSSTILVKTE--NFLPTFQLKELGLANCSLNVVPT-FLLHQYDLKYLDLSHNNLV  136 (136)
Q Consensus        85 l~~~~~~~~~--~~~~~~~L~~l~l~~n~~~~~~~-~~~~~~~L~~l~l~~n~l~  136 (136)
                      +++|.+....  .+..+++|++|++++|.++.+|. .+..+++|++|++++|+++
T Consensus       354 Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~  408 (455)
T 3v47_A          354 LSYNHIRALGDQSFLGLPNLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWD  408 (455)
T ss_dssp             CCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred             CCCCcccccChhhccccccccEEECCCCccccCCHhHhccCCcccEEEccCCCcc
Confidence            9999886663  56778899999999999977775 5689999999999999874

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=99.81  E-value=6.1e-19  Score=121.47  Aligned_cols=134  Identities=22%  Similarity=0.239  Sum_probs=95.8

Q ss_pred             CCCCcccEEEcCCCcccccCcccccCCCcccEEEccCCcccc--ccchhhhccCCCCEEEccCCcCcCCCChHhhhcCcc
Q 039528            2 CELKNLFELNLKGNNVEGHLPNCLKYLSHLKVFDISQNQLSG--SLSSTITSLTSLEYLDLSYNNFEGPCPLSLLAHHSK   79 (136)
Q Consensus         2 ~~l~~L~~l~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~--~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~~   79 (136)
                      ..+++|++|++++|.+++..|..+..+++|++|++++|.+++  ..|..+..+++|++|++++|.+.+.+|...+..+++
T Consensus       321 ~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~~l~~  400 (520)
T 2z7x_B          321 SKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKS  400 (520)
T ss_dssp             SSCCCCCEEECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGCSCCCCTT
T ss_pred             hhCCcccEEEeECCccChhhhhhhccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCcccccchhccCcc
Confidence            457889999999999998788888899999999999998875  455678889999999999999886466555666777


Q ss_pred             ceEEEeccceeeeccCCCCCccccEEEcCCCCCCCCChhhhcCCCCcEEEcCCCcC
Q 039528           80 LEVLVLSSTILVKTENFLPTFQLKELGLANCSLNVVPTFLLHQYDLKYLDLSHNNL  135 (136)
Q Consensus        80 l~~l~l~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~L~~l~l~~n~l  135 (136)
                      |+++++++|.+.......-.++|+.|++++|.++.+|..+..+++|++|++++|.+
T Consensus       401 L~~L~Ls~N~l~~~~~~~l~~~L~~L~Ls~N~l~~ip~~~~~l~~L~~L~L~~N~l  456 (520)
T 2z7x_B          401 LLSLNMSSNILTDTIFRCLPPRIKVLDLHSNKIKSIPKQVVKLEALQELNVASNQL  456 (520)
T ss_dssp             CCEEECCSSCCCGGGGGSCCTTCCEEECCSSCCCCCCGGGGGCTTCCEEECCSSCC
T ss_pred             CCEEECcCCCCCcchhhhhcccCCEEECCCCcccccchhhhcCCCCCEEECCCCcC
Confidence            77777777765322111111456666666666666665555666666666666654

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=99.81  E-value=7.5e-19  Score=119.03  Aligned_cols=130  Identities=26%  Similarity=0.317  Sum_probs=98.5

Q ss_pred             CcccEEEcCCCcccccCcccccCCCcccEEEccCCccccccchhhhccCCCCEEEccCCcCcCCCChHhhhcCccceEEE
Q 039528            5 KNLFELNLKGNNVEGHLPNCLKYLSHLKVFDISQNQLSGSLSSTITSLTSLEYLDLSYNNFEGPCPLSLLAHHSKLEVLV   84 (136)
Q Consensus         5 ~~L~~l~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~~l~~l~   84 (136)
                      +.++.|++++|.+....+..|.++++|++|++++|.++...+..|..+++|++|++++|+++ .++...+..+++|++++
T Consensus        64 ~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~  142 (440)
T 3zyj_A           64 TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLT-TIPNGAFVYLSKLKELW  142 (440)
T ss_dssp             TTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSCCS-SCCTTTSCSCSSCCEEE
T ss_pred             CCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCCcCC-eeCHhHhhccccCceee
Confidence            46899999999999888889999999999999999999777889999999999999999998 45555688899999999


Q ss_pred             eccceeeecc--CCCCCccccEEEcCCCC-CCCCCh-hhhcCCCCcEEEcCCCcC
Q 039528           85 LSSTILVKTE--NFLPTFQLKELGLANCS-LNVVPT-FLLHQYDLKYLDLSHNNL  135 (136)
Q Consensus        85 l~~~~~~~~~--~~~~~~~L~~l~l~~n~-~~~~~~-~~~~~~~L~~l~l~~n~l  135 (136)
                      +++|.+...+  .+..+++|+.|++++|. ++.++. .+..+++|++|++++|.+
T Consensus       143 L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l  197 (440)
T 3zyj_A          143 LRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNL  197 (440)
T ss_dssp             CCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCC
T ss_pred             CCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcC
Confidence            9998776554  34445555666655533 243332 344455555555544443

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=99.80  E-value=9.2e-19  Score=122.44  Aligned_cols=131  Identities=22%  Similarity=0.234  Sum_probs=114.2

Q ss_pred             CcccEEEcCCCcccccCcccccCCCcccEEEccCCccccccchhhhccCCCCEEEccCCcCcCCCChHhhhcCccceEEE
Q 039528            5 KNLFELNLKGNNVEGHLPNCLKYLSHLKVFDISQNQLSGSLSSTITSLTSLEYLDLSYNNFEGPCPLSLLAHHSKLEVLV   84 (136)
Q Consensus         5 ~~L~~l~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~~l~~l~   84 (136)
                      +++++|++++|.+++..+..|.++++|++|++++|.+++..|..|..+++|++|++++|.+++..| ..+..+++|++++
T Consensus        32 ~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p-~~~~~l~~L~~L~  110 (606)
T 3vq2_A           32 SSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSP-GSFSGLTSLENLV  110 (606)
T ss_dssp             TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCCCCT-TSSTTCTTCCEEE
T ss_pred             CCcCEEECCCCCcCEeChhhccCCccCcEEeCCCCcccccCHHHhhchhhcCEeECCCCcccccCh-hhcCCcccCCEEE
Confidence            568999999999998888889999999999999999987778889999999999999999985545 4488899999999


Q ss_pred             eccceeeecc--CCCCCccccEEEcCCCCCC--CCChhhhcCCCCcEEEcCCCcCC
Q 039528           85 LSSTILVKTE--NFLPTFQLKELGLANCSLN--VVPTFLLHQYDLKYLDLSHNNLV  136 (136)
Q Consensus        85 l~~~~~~~~~--~~~~~~~L~~l~l~~n~~~--~~~~~~~~~~~L~~l~l~~n~l~  136 (136)
                      +++|.+...+  .+..+.+|++|++++|.+.  .+|..++.+++|++|++++|.++
T Consensus       111 L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~l~  166 (606)
T 3vq2_A          111 AVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQ  166 (606)
T ss_dssp             CTTSCCCCSSSSCCTTCTTCCEEECCSSCCCCCCCCGGGGTCTTCCEEECCSSCCC
T ss_pred             ccCCccccccccccCCCCCCCEEeCCCCcccceechHhHhhcCCCCEEEccCCcce
Confidence            9999876554  5677889999999999995  57889999999999999998764

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=99.80  E-value=9.1e-19  Score=118.96  Aligned_cols=130  Identities=26%  Similarity=0.312  Sum_probs=99.4

Q ss_pred             CcccEEEcCCCcccccCcccccCCCcccEEEccCCccccccchhhhccCCCCEEEccCCcCcCCCChHhhhcCccceEEE
Q 039528            5 KNLFELNLKGNNVEGHLPNCLKYLSHLKVFDISQNQLSGSLSSTITSLTSLEYLDLSYNNFEGPCPLSLLAHHSKLEVLV   84 (136)
Q Consensus         5 ~~L~~l~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~~l~~l~   84 (136)
                      ++++.|++++|.+++..+..|.++++|++|++++|.+++..+..+..+++|++|++++|.++ .++...+..+++|++|+
T Consensus        75 ~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~  153 (452)
T 3zyi_A           75 SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLT-VIPSGAFEYLSKLRELW  153 (452)
T ss_dssp             TTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCS-BCCTTTSSSCTTCCEEE
T ss_pred             CCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCCcCC-ccChhhhcccCCCCEEE
Confidence            46899999999999888899999999999999999999888889999999999999999998 45556688899999999


Q ss_pred             eccceeeecc--CCCCCccccEEEcCCCC-CCCCCh-hhhcCCCCcEEEcCCCcC
Q 039528           85 LSSTILVKTE--NFLPTFQLKELGLANCS-LNVVPT-FLLHQYDLKYLDLSHNNL  135 (136)
Q Consensus        85 l~~~~~~~~~--~~~~~~~L~~l~l~~n~-~~~~~~-~~~~~~~L~~l~l~~n~l  135 (136)
                      +++|.+...+  .+..+++|+.|++++|. ++.++. .+..+++|++|++++|.+
T Consensus       154 L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l  208 (452)
T 3zyi_A          154 LRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNI  208 (452)
T ss_dssp             CCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCC
T ss_pred             CCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCcc
Confidence            9999876654  34445556666665532 344433 344455555555554443

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=99.80  E-value=3.1e-19  Score=116.14  Aligned_cols=129  Identities=23%  Similarity=0.216  Sum_probs=63.8

Q ss_pred             CcccEEEcCCCcccccCcccccCCCcccEEEccCCccccc--cchhh--hccCCCCEEEccCCcCc--------------
Q 039528            5 KNLFELNLKGNNVEGHLPNCLKYLSHLKVFDISQNQLSGS--LSSTI--TSLTSLEYLDLSYNNFE--------------   66 (136)
Q Consensus         5 ~~L~~l~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~--~~~~~--~~~~~l~~l~l~~~~~~--------------   66 (136)
                      ++|++|++++|.+.+..+..+..+++|++|++++|.+.+.  .+..+  ..+++|++|++++|.++              
T Consensus       149 ~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~  228 (312)
T 1wwl_A          149 PGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARV  228 (312)
T ss_dssp             TTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTC
T ss_pred             CCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCC
Confidence            5566666666666655555556666666666666654322  12222  44455555555555544              


Q ss_pred             -------------CCCChHhhhcCccceEEEeccceeeeccCCCCCccccEEEcCCCCCCCCChhhhcCCCCcEEEcCCC
Q 039528           67 -------------GPCPLSLLAHHSKLEVLVLSSTILVKTENFLPTFQLKELGLANCSLNVVPTFLLHQYDLKYLDLSHN  133 (136)
Q Consensus        67 -------------~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~L~~l~l~~n  133 (136)
                                   +..+...+..+++|+++++++|.+...+.... ++|++|++++|+++.+|. +..+++|++|++++|
T Consensus       229 ~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~~ip~~~~-~~L~~L~Ls~N~l~~~p~-~~~l~~L~~L~L~~N  306 (312)
T 1wwl_A          229 QLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLKQVPKGLP-AKLSVLDLSYNRLDRNPS-PDELPQVGNLSLKGN  306 (312)
T ss_dssp             CCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSCCSSCCSSCC-SEEEEEECCSSCCCSCCC-TTTSCEEEEEECTTC
T ss_pred             CCCEEECCCCcCCcccchhhhhhcCCCCEEECCCCccChhhhhcc-CCceEEECCCCCCCCChh-HhhCCCCCEEeccCC
Confidence                         32221222334444444444444443332211 355555555555544444 555555666666666


Q ss_pred             cC
Q 039528          134 NL  135 (136)
Q Consensus       134 ~l  135 (136)
                      ++
T Consensus       307 ~l  308 (312)
T 1wwl_A          307 PF  308 (312)
T ss_dssp             TT
T ss_pred             CC
Confidence            54

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=99.80  E-value=3.4e-19  Score=128.85  Aligned_cols=133  Identities=27%  Similarity=0.369  Sum_probs=119.1

Q ss_pred             CCCcccEEEcCCCcccccCcccccCCCcccEEEccCCc-ccc-ccchhhhccC-------CCCEEEccCCcCcCCCCh-H
Q 039528            3 ELKNLFELNLKGNNVEGHLPNCLKYLSHLKVFDISQNQ-LSG-SLSSTITSLT-------SLEYLDLSYNNFEGPCPL-S   72 (136)
Q Consensus         3 ~l~~L~~l~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~-~~~-~~~~~~~~~~-------~l~~l~l~~~~~~~~~~~-~   72 (136)
                      ++++|+.|++++|.+.+.+|..+.++++|++|++++|. +++ .+|..+..+.       +|++|++++|.+. .+|. .
T Consensus       489 ~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~-~ip~~~  567 (876)
T 4ecn_A          489 NLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE-EFPASA  567 (876)
T ss_dssp             GCTTCCEEEEESCTTCCSCCGGGGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC-BCCCHH
T ss_pred             cCCCCCEEECcCCCCCccChHHHhCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCC-ccCChh
Confidence            78999999999999999999999999999999999998 887 7888777665       9999999999998 7775 2


Q ss_pred             hhhcCccceEEEeccceeeeccCCCCCccccEEEcCCCCCCCCChhhhcCCC-CcEEEcCCCcCC
Q 039528           73 LLAHHSKLEVLVLSSTILVKTENFLPTFQLKELGLANCSLNVVPTFLLHQYD-LKYLDLSHNNLV  136 (136)
Q Consensus        73 ~~~~~~~l~~l~l~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~-L~~l~l~~n~l~  136 (136)
                      .+..+++|+.+++++|.+...+.+..+++|+.|++++|.++.+|..+..+++ |+.|++++|.++
T Consensus       568 ~l~~L~~L~~L~Ls~N~l~~lp~~~~L~~L~~L~Ls~N~l~~lp~~l~~l~~~L~~L~Ls~N~L~  632 (876)
T 4ecn_A          568 SLQKMVKLGLLDCVHNKVRHLEAFGTNVKLTDLKLDYNQIEEIPEDFCAFTDQVEGLGFSHNKLK  632 (876)
T ss_dssp             HHTTCTTCCEEECTTSCCCBCCCCCTTSEESEEECCSSCCSCCCTTSCEECTTCCEEECCSSCCC
T ss_pred             hhhcCCCCCEEECCCCCcccchhhcCCCcceEEECcCCccccchHHHhhccccCCEEECcCCCCC
Confidence            5889999999999999888777778888999999999999999988999998 999999998764

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=99.80  E-value=6.7e-19  Score=123.13  Aligned_cols=132  Identities=20%  Similarity=0.313  Sum_probs=80.3

Q ss_pred             CCCcccEEEcCCCcccccCcccccCCCcccEEEccCCcccc-ccchhhhccCCCCEEEccCCcCcCCCChHhhhcCccce
Q 039528            3 ELKNLFELNLKGNNVEGHLPNCLKYLSHLKVFDISQNQLSG-SLSSTITSLTSLEYLDLSYNNFEGPCPLSLLAHHSKLE   81 (136)
Q Consensus         3 ~l~~L~~l~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~-~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~~l~   81 (136)
                      .+++|+.|++++|.+.+..|..+..+++|++|++++|.+.+ ..|..+..+++|++|++++|.+++..+ ..+..+++|+
T Consensus       422 ~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-~~~~~l~~L~  500 (606)
T 3vq2_A          422 SLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISW-GVFDTLHRLQ  500 (606)
T ss_dssp             TCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECT-TTTTTCTTCC
T ss_pred             ccccCCEEECcCCCCCccchhhhcCCCCCCEEECCCCcCCCcchHHhhccCCCCCEEECCCCcCCccCh-hhhcccccCC
Confidence            45556666666666655555556666666666666666654 245556666666666666666654333 3355666666


Q ss_pred             EEEeccceeeec--cCCCCCccccEEEcCCCCCCCCChhhhcCC-CCcEEEcCCCcC
Q 039528           82 VLVLSSTILVKT--ENFLPTFQLKELGLANCSLNVVPTFLLHQY-DLKYLDLSHNNL  135 (136)
Q Consensus        82 ~l~l~~~~~~~~--~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~-~L~~l~l~~n~l  135 (136)
                      ++++++|.+...  ..+..+++|++|++++|.++.+|..+..++ +|+++++++|++
T Consensus       501 ~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~p~~~~~l~~~L~~l~l~~N~~  557 (606)
T 3vq2_A          501 LLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIETSKGILQHFPKSLAFFNLTNNSV  557 (606)
T ss_dssp             EEECCSSCCSCEEGGGTTTCTTCCEEECTTSCCCCEESCGGGSCTTCCEEECCSCCC
T ss_pred             EEECCCCcCCCcCHHHccCCCcCCEEECCCCcCcccCHhHhhhcccCcEEEccCCCc
Confidence            666666655443  234555667777777777766666666665 477777776665

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=99.80  E-value=6.3e-19  Score=114.23  Aligned_cols=132  Identities=23%  Similarity=0.288  Sum_probs=78.3

Q ss_pred             CCCcccEEEcCCCcccccCc-ccccCCCcccEEEccCCccccccchhhhccCCCCEEEccCCcCcC-CCChHhhhcCccc
Q 039528            3 ELKNLFELNLKGNNVEGHLP-NCLKYLSHLKVFDISQNQLSGSLSSTITSLTSLEYLDLSYNNFEG-PCPLSLLAHHSKL   80 (136)
Q Consensus         3 ~l~~L~~l~l~~~~l~~~~~-~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~-~~~~~~~~~~~~l   80 (136)
                      .+++|++|++++|.+.+..+ ..+..+++|++|++++|.+.+..+..+..+++|++|++++|.+.+ ..+ ..+..+++|
T Consensus        99 ~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~-~~~~~l~~L  177 (306)
T 2z66_A           99 GLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLP-DIFTELRNL  177 (306)
T ss_dssp             TCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGGEEC-SCCTTCTTC
T ss_pred             CCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCccccccch-hHHhhCcCC
Confidence            34555556666665554333 345556666666666666655555556666666666666666653 223 235556666


Q ss_pred             eEEEeccceeeecc--CCCCCccccEEEcCCCCCCCCCh-hhhcCCCCcEEEcCCCcC
Q 039528           81 EVLVLSSTILVKTE--NFLPTFQLKELGLANCSLNVVPT-FLLHQYDLKYLDLSHNNL  135 (136)
Q Consensus        81 ~~l~l~~~~~~~~~--~~~~~~~L~~l~l~~n~~~~~~~-~~~~~~~L~~l~l~~n~l  135 (136)
                      +++++++|.+....  .+..+++|+.|++++|.++.++. .+..+++|+.|++++|.+
T Consensus       178 ~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l  235 (306)
T 2z66_A          178 TFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHI  235 (306)
T ss_dssp             CEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCC
T ss_pred             CEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCccChhhccCcccCCEeECCCCCC
Confidence            66666666654442  34555667777777777755543 566677777777777765

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=99.79  E-value=3.1e-18  Score=107.08  Aligned_cols=126  Identities=21%  Similarity=0.258  Sum_probs=109.6

Q ss_pred             ccEEEcCCCcccccCcccccCCCcccEEEccCCccccccchhhhccCCCCEEEccCCcCcCCCChHhhhcCccceEEEec
Q 039528            7 LFELNLKGNNVEGHLPNCLKYLSHLKVFDISQNQLSGSLSSTITSLTSLEYLDLSYNNFEGPCPLSLLAHHSKLEVLVLS   86 (136)
Q Consensus         7 L~~l~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~~l~~l~l~   86 (136)
                      -+.++.+++.+. .+|..+  .++|++|++++|.+++..+..+..+++|++|++++|.+. .++...+..+++|+.++++
T Consensus        21 ~~~v~c~~~~l~-~ip~~~--~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~-~i~~~~~~~l~~L~~L~Ls   96 (229)
T 3e6j_A           21 GTTVDCRSKRHA-SVPAGI--PTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLG-ALPVGVFDSLTQLTVLDLG   96 (229)
T ss_dssp             TTEEECTTSCCS-SCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECC
T ss_pred             CCEeEccCCCcC-ccCCCC--CCCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCC-CcChhhcccCCCcCEEECC
Confidence            467888888887 566544  388999999999999888888999999999999999997 5665667899999999999


Q ss_pred             cceeeecc--CCCCCccccEEEcCCCCCCCCChhhhcCCCCcEEEcCCCcCC
Q 039528           87 STILVKTE--NFLPTFQLKELGLANCSLNVVPTFLLHQYDLKYLDLSHNNLV  136 (136)
Q Consensus        87 ~~~~~~~~--~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~L~~l~l~~n~l~  136 (136)
                      +|.+...+  .+..+++|+.|++++|.++.+|..+..+++|+.|++++|.++
T Consensus        97 ~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~L~~N~l~  148 (229)
T 3e6j_A           97 TNQLTVLPSAVFDRLVHLKELFMCCNKLTELPRGIERLTHLTHLALDQNQLK  148 (229)
T ss_dssp             SSCCCCCCTTTTTTCTTCCEEECCSSCCCSCCTTGGGCTTCSEEECCSSCCC
T ss_pred             CCcCCccChhHhCcchhhCeEeccCCcccccCcccccCCCCCEEECCCCcCC
Confidence            99887665  356788999999999999999999999999999999999874

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=99.79  E-value=1.8e-18  Score=120.10  Aligned_cols=131  Identities=25%  Similarity=0.253  Sum_probs=112.0

Q ss_pred             CcccEEEcCCCcccccCcccccCCCcccEEEccCCccccccchhhhccCCCCEEEccCCcCcCCCChHhhhcCccceEEE
Q 039528            5 KNLFELNLKGNNVEGHLPNCLKYLSHLKVFDISQNQLSGSLSSTITSLTSLEYLDLSYNNFEGPCPLSLLAHHSKLEVLV   84 (136)
Q Consensus         5 ~~L~~l~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~~l~~l~   84 (136)
                      +.++.|++++|.+++..+..|.++++|++|++++|.+++..+..|..+++|++|++++|.+.+ .+...+..+++|++++
T Consensus        28 ~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~-~~~~~~~~l~~L~~L~  106 (570)
T 2z63_A           28 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQS-LALGAFSGLSSLQKLV  106 (570)
T ss_dssp             SSCCEEECCSCCCCEECTTTTTTCSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCE-ECTTTTTTCTTCCEEE
T ss_pred             ccccEEEccCCccCccChhHhhCCCCceEEECCCCcCCccCcccccCchhCCEEeCcCCcCCc-cCHhhhcCcccccccc
Confidence            458899999999998778889999999999999999987777888999999999999999874 4434588899999999


Q ss_pred             eccceeeecc--CCCCCccccEEEcCCCCCC--CCChhhhcCCCCcEEEcCCCcCC
Q 039528           85 LSSTILVKTE--NFLPTFQLKELGLANCSLN--VVPTFLLHQYDLKYLDLSHNNLV  136 (136)
Q Consensus        85 l~~~~~~~~~--~~~~~~~L~~l~l~~n~~~--~~~~~~~~~~~L~~l~l~~n~l~  136 (136)
                      +++|.+...+  .+..+.+|++|++++|.+.  .+|..++.+++|++|++++|.++
T Consensus       107 L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~l~  162 (570)
T 2z63_A          107 AVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQ  162 (570)
T ss_dssp             CTTSCCCCSTTCSCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSCCC
T ss_pred             ccccccccCCCccccccccccEEecCCCccceecChhhhcccCCCCEEeCcCCccc
Confidence            9998887665  3677889999999999995  47889999999999999998763

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=99.79  E-value=1.6e-18  Score=118.33  Aligned_cols=131  Identities=28%  Similarity=0.331  Sum_probs=62.2

Q ss_pred             CCcccEEEcCCCcccccCcccccCCCcccEEEccCCccccccchhhhccCCCCEEEccCCcCcCCCChHhhhcCccceEE
Q 039528            4 LKNLFELNLKGNNVEGHLPNCLKYLSHLKVFDISQNQLSGSLSSTITSLTSLEYLDLSYNNFEGPCPLSLLAHHSKLEVL   83 (136)
Q Consensus         4 l~~L~~l~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~~l~~l   83 (136)
                      +++|++|++++|.+++..|..|.++++|++|++++|.++...+..+..+++|++|++++|.+.+..+ ..+..+++|+++
T Consensus        55 l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~-~~~~~l~~L~~L  133 (477)
T 2id5_A           55 FPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKIVILLD-YMFQDLYNLKSL  133 (477)
T ss_dssp             CTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCSCCTTSSTTCTTCCEEECTTSCCCEECT-TTTTTCTTCCEE
T ss_pred             CCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCcCCccCcccccCCCCCCEEECCCCccccCCh-hHccccccCCEE
Confidence            4444444554444444444444444555555554444443333334444455555555554442222 224444555555


Q ss_pred             Eeccceeeecc--CCCCCccccEEEcCCCCCCCCCh-hhhcCCCCcEEEcCCCcC
Q 039528           84 VLSSTILVKTE--NFLPTFQLKELGLANCSLNVVPT-FLLHQYDLKYLDLSHNNL  135 (136)
Q Consensus        84 ~l~~~~~~~~~--~~~~~~~L~~l~l~~n~~~~~~~-~~~~~~~L~~l~l~~n~l  135 (136)
                      ++++|.+....  .+..+++|+.|++++|.++.++. .+..+++|+.|++++|.+
T Consensus       134 ~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i  188 (477)
T 2id5_A          134 EVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNI  188 (477)
T ss_dssp             EECCTTCCEECTTSSTTCTTCCEEEEESCCCSSCCHHHHTTCTTCCEEEEESCCC
T ss_pred             ECCCCccceeChhhccCCCCCCEEECCCCcCcccChhHhcccCCCcEEeCCCCcC
Confidence            55554443322  33444455555555555544443 355555555555555543

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=99.79  E-value=9.8e-19  Score=111.90  Aligned_cols=132  Identities=21%  Similarity=0.215  Sum_probs=88.6

Q ss_pred             CCCCcccEEEcCCCcccccCcccccCCCcccEEEccCCccccccchhhhccCCCCEEEccCCcCcCCCChHhhhcCccce
Q 039528            2 CELKNLFELNLKGNNVEGHLPNCLKYLSHLKVFDISQNQLSGSLSSTITSLTSLEYLDLSYNNFEGPCPLSLLAHHSKLE   81 (136)
Q Consensus         2 ~~l~~L~~l~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~~l~   81 (136)
                      .++++|++|++++|.+++..+..+..+++|++|++++|.+++..+..+..+++|++|++.+|.+.+ .+...+..+++|+
T Consensus        49 ~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~-~~~~~~~~l~~L~  127 (276)
T 2z62_A           49 FSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLAS-LENFPIGHLKTLK  127 (276)
T ss_dssp             TTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTSCCCC-STTCCCTTCTTCC
T ss_pred             ccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEEECCCCCccc-cCchhcccCCCCC
Confidence            457778888888888886666677888888888888888876666777777888888888877763 3323366777778


Q ss_pred             EEEeccceeeec---cCCCCCccccEEEcCCCCCCCCC-hhhhcCCCCc----EEEcCCCc
Q 039528           82 VLVLSSTILVKT---ENFLPTFQLKELGLANCSLNVVP-TFLLHQYDLK----YLDLSHNN  134 (136)
Q Consensus        82 ~l~l~~~~~~~~---~~~~~~~~L~~l~l~~n~~~~~~-~~~~~~~~L~----~l~l~~n~  134 (136)
                      ++++++|.+...   ..+..+++|++|++++|.++.++ ..+..+.+++    .+++++|.
T Consensus       128 ~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~l~l~L~ls~n~  188 (276)
T 2z62_A          128 ELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNP  188 (276)
T ss_dssp             EEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCEEEECCSSC
T ss_pred             EEECcCCccceecCchhhccCCCCCEEECCCCCCCcCCHHHhhhhhhccccceeeecCCCc
Confidence            888877766542   23455567777777777775544 2343333333    44444444

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=99.79  E-value=2.1e-18  Score=119.90  Aligned_cols=133  Identities=24%  Similarity=0.240  Sum_probs=94.5

Q ss_pred             CCCCcccEEEcCCCcccccCcccccCCCcccEEEccCCccccc--cchhhhccCCCCEEEccCCcCcCCCChHhhhcCcc
Q 039528            2 CELKNLFELNLKGNNVEGHLPNCLKYLSHLKVFDISQNQLSGS--LSSTITSLTSLEYLDLSYNNFEGPCPLSLLAHHSK   79 (136)
Q Consensus         2 ~~l~~L~~l~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~--~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~~   79 (136)
                      ..+++|++|++++|.+++..|..+..+++|++|++++|.+++.  .|..+..+++|++|++++|.+.+.++...+..+++
T Consensus       350 ~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~l~~  429 (562)
T 3a79_B          350 PSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAES  429 (562)
T ss_dssp             SSCCCCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSCCBSCCSSCCCCCCTT
T ss_pred             cCCCCceEEECCCCccccchhhhhcccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCCcCCCccChhhhcCccc
Confidence            4578899999999999987888889999999999999988753  34567888999999999999886466555666677


Q ss_pred             ceEEEeccceeeeccCCCCC-ccccEEEcCCCCCCCCChhhhcCCCCcEEEcCCCcC
Q 039528           80 LEVLVLSSTILVKTENFLPT-FQLKELGLANCSLNVVPTFLLHQYDLKYLDLSHNNL  135 (136)
Q Consensus        80 l~~l~l~~~~~~~~~~~~~~-~~L~~l~l~~n~~~~~~~~~~~~~~L~~l~l~~n~l  135 (136)
                      |+.+++++|.+.... +... ++|+.|++++|.++.+|..++.+++|++|++++|.+
T Consensus       430 L~~L~l~~n~l~~~~-~~~l~~~L~~L~L~~N~l~~ip~~~~~l~~L~~L~L~~N~l  485 (562)
T 3a79_B          430 ILVLNLSSNMLTGSV-FRCLPPKVKVLDLHNNRIMSIPKDVTHLQALQELNVASNQL  485 (562)
T ss_dssp             CCEEECCSSCCCGGG-GSSCCTTCSEEECCSSCCCCCCTTTTSSCCCSEEECCSSCC
T ss_pred             CCEEECCCCCCCcch-hhhhcCcCCEEECCCCcCcccChhhcCCCCCCEEECCCCCC
Confidence            777777776653221 1111 356666666666666665555666666666666554

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=99.79  E-value=7.5e-19  Score=115.96  Aligned_cols=131  Identities=27%  Similarity=0.320  Sum_probs=60.0

Q ss_pred             CCCcccEEEcCCCcccccCcccccCCCcccEEEccCCccccccchhhhccCCCCEEEccCCcCcCCCCh-HhhhcCccce
Q 039528            3 ELKNLFELNLKGNNVEGHLPNCLKYLSHLKVFDISQNQLSGSLSSTITSLTSLEYLDLSYNNFEGPCPL-SLLAHHSKLE   81 (136)
Q Consensus         3 ~l~~L~~l~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~-~~~~~~~~l~   81 (136)
                      ++++|+.|++++|.+++..+..+..+++|++|++++|.+++..+..+..+++|++|++++|.+. .++. ..+..+++|+
T Consensus        74 ~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~l~~~~~~~~l~~L~  152 (353)
T 2z80_A           74 RCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYK-TLGETSLFSHLTKLQ  152 (353)
T ss_dssp             TCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSSCCHHHHTTCTTCSEEECTTCCCS-SSCSSCSCTTCTTCC
T ss_pred             cCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCcCCcCCHhHhCCCccCCEEECCCCCCc-ccCchhhhccCCCCc
Confidence            3444555555555555444444455555555555555554333333444555555555555544 2332 2244445555


Q ss_pred             EEEeccc-eeeecc--CCCCCccccEEEcCCCCCCCC-ChhhhcCCCCcEEEcCCCc
Q 039528           82 VLVLSST-ILVKTE--NFLPTFQLKELGLANCSLNVV-PTFLLHQYDLKYLDLSHNN  134 (136)
Q Consensus        82 ~l~l~~~-~~~~~~--~~~~~~~L~~l~l~~n~~~~~-~~~~~~~~~L~~l~l~~n~  134 (136)
                      ++++++| .+...+  .+..+++|++|++++|.++.+ |..++.+++|++|++++|.
T Consensus       153 ~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~  209 (353)
T 2z80_A          153 ILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQ  209 (353)
T ss_dssp             EEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSC
T ss_pred             EEECCCCccccccCHHHccCCCCCCEEECCCCCcCccCHHHHhccccCCeecCCCCc
Confidence            5555554 222221  233444555555555555322 3444444445555554443

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=99.79  E-value=3.2e-19  Score=125.65  Aligned_cols=133  Identities=25%  Similarity=0.392  Sum_probs=109.8

Q ss_pred             CCCcccEEEcCCCcccccCcccccCCCcccEEEccCCc-ccc-ccchhhhcc------CCCCEEEccCCcCcCCCCh-Hh
Q 039528            3 ELKNLFELNLKGNNVEGHLPNCLKYLSHLKVFDISQNQ-LSG-SLSSTITSL------TSLEYLDLSYNNFEGPCPL-SL   73 (136)
Q Consensus         3 ~l~~L~~l~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~-~~~-~~~~~~~~~------~~l~~l~l~~~~~~~~~~~-~~   73 (136)
                      ++++|++|++++|.+.+.+|..+.++++|++|++++|. +++ .+|..+..+      ++|++|++++|.++ .+|. ..
T Consensus       247 ~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~-~ip~~~~  325 (636)
T 4eco_A          247 NLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLK-TFPVETS  325 (636)
T ss_dssp             GCTTCCEEEEECCTTCSSCCTTTTTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCS-SCCCHHH
T ss_pred             ccCCCCEEEecCCcCCccChHHHhcCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCC-ccCchhh
Confidence            68899999999999998999999999999999999998 887 788888776      89999999999998 6775 24


Q ss_pred             hhcCccceEEEeccceee-eccCCCCCccccEEEcCCCCCCCCChhhhcCCC-CcEEEcCCCcCC
Q 039528           74 LAHHSKLEVLVLSSTILV-KTENFLPTFQLKELGLANCSLNVVPTFLLHQYD-LKYLDLSHNNLV  136 (136)
Q Consensus        74 ~~~~~~l~~l~l~~~~~~-~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~-L~~l~l~~n~l~  136 (136)
                      +..+++|+++++++|.+. ..+.+..+++|+.|++++|.++.+|..++.+++ |+.|++++|.++
T Consensus       326 l~~l~~L~~L~L~~N~l~g~ip~~~~l~~L~~L~L~~N~l~~lp~~l~~l~~~L~~L~Ls~N~l~  390 (636)
T 4eco_A          326 LQKMKKLGMLECLYNQLEGKLPAFGSEIKLASLNLAYNQITEIPANFCGFTEQVENLSFAHNKLK  390 (636)
T ss_dssp             HTTCTTCCEEECCSCCCEEECCCCEEEEEESEEECCSSEEEECCTTSEEECTTCCEEECCSSCCS
T ss_pred             hccCCCCCEEeCcCCcCccchhhhCCCCCCCEEECCCCccccccHhhhhhcccCcEEEccCCcCc
Confidence            888899999999998776 556555666788888888877777777777777 778877777653

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=99.79  E-value=3.6e-18  Score=110.21  Aligned_cols=125  Identities=26%  Similarity=0.331  Sum_probs=75.2

Q ss_pred             CCCcccEEEcCCCcccccCcccccCCCcccEEEccCCccccccchhhhccCCCCEEEccCCcCcCCCChHhhhcCccceE
Q 039528            3 ELKNLFELNLKGNNVEGHLPNCLKYLSHLKVFDISQNQLSGSLSSTITSLTSLEYLDLSYNNFEGPCPLSLLAHHSKLEV   82 (136)
Q Consensus         3 ~l~~L~~l~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~~l~~   82 (136)
                      .+++|+.|++++|.+++..+  +..+++|++|++++|.+++ . ..+..+++|++|++++|.+.+ ++  .+..+++|+.
T Consensus        66 ~l~~L~~L~L~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~-~-~~l~~l~~L~~L~L~~n~i~~-~~--~l~~l~~L~~  138 (291)
T 1h6t_A           66 YLPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLDENKVKD-L-SSLKDLKKLKSLSLEHNGISD-IN--GLVHLPQLES  138 (291)
T ss_dssp             GCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCC-G-GGGTTCTTCCEEECTTSCCCC-CG--GGGGCTTCCE
T ss_pred             cCCCCCEEEccCCccCCCcc--cccCCCCCEEECCCCcCCC-C-hhhccCCCCCEEECCCCcCCC-Ch--hhcCCCCCCE
Confidence            35666677777776664332  6666667777776666653 2 235666666666666666653 22  2555666666


Q ss_pred             EEeccceeeeccCCCCCccccEEEcCCCCCCCCChhhhcCCCCcEEEcCCCcC
Q 039528           83 LVLSSTILVKTENFLPTFQLKELGLANCSLNVVPTFLLHQYDLKYLDLSHNNL  135 (136)
Q Consensus        83 l~l~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~L~~l~l~~n~l  135 (136)
                      +++++|.+...+.+..+++|+.|++++|.++.++. +..+++|+.|++++|.+
T Consensus       139 L~l~~n~l~~~~~l~~l~~L~~L~L~~N~l~~~~~-l~~l~~L~~L~L~~N~i  190 (291)
T 1h6t_A          139 LYLGNNKITDITVLSRLTKLDTLSLEDNQISDIVP-LAGLTKLQNLYLSKNHI  190 (291)
T ss_dssp             EECCSSCCCCCGGGGGCTTCSEEECCSSCCCCCGG-GTTCTTCCEEECCSSCC
T ss_pred             EEccCCcCCcchhhccCCCCCEEEccCCccccchh-hcCCCccCEEECCCCcC
Confidence            66666665555445555566666666666655544 55666666666666654

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=99.78  E-value=7.1e-19  Score=110.46  Aligned_cols=128  Identities=14%  Similarity=0.143  Sum_probs=59.8

Q ss_pred             cccEEEcCCCcccccCcccccCCCcccEEEccCCc-cccccchhhhccCCCCEEEccC-CcCcCCCChHhhhcCccceEE
Q 039528            6 NLFELNLKGNNVEGHLPNCLKYLSHLKVFDISQNQ-LSGSLSSTITSLTSLEYLDLSY-NNFEGPCPLSLLAHHSKLEVL   83 (136)
Q Consensus         6 ~L~~l~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~-~~~~~~~~~~~~~~l~~l~l~~-~~~~~~~~~~~~~~~~~l~~l   83 (136)
                      ++++|++++|.+++..+..+.++++|++|++++|. ++...+..+..+++|++|++++ |.++ .++...+..+++|+++
T Consensus        32 ~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~-~i~~~~f~~l~~L~~L  110 (239)
T 2xwt_C           32 STQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLT-YIDPDALKELPLLKFL  110 (239)
T ss_dssp             TCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCC-EECTTSEECCTTCCEE
T ss_pred             cccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCee-EcCHHHhCCCCCCCEE
Confidence            35555555555554444445555555555555554 4433333445555555555554 5554 2232334445555555


Q ss_pred             EeccceeeeccCCCCCcccc---EEEcCCC-CCCCCCh-hhhcCCCCc-EEEcCCCc
Q 039528           84 VLSSTILVKTENFLPTFQLK---ELGLANC-SLNVVPT-FLLHQYDLK-YLDLSHNN  134 (136)
Q Consensus        84 ~l~~~~~~~~~~~~~~~~L~---~l~l~~n-~~~~~~~-~~~~~~~L~-~l~l~~n~  134 (136)
                      ++++|.+...+.+..+.+++   .|++++| .++.++. .+..+++|+ .+++++|.
T Consensus       111 ~l~~n~l~~lp~~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~  167 (239)
T 2xwt_C          111 GIFNTGLKMFPDLTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNG  167 (239)
T ss_dssp             EEEEECCCSCCCCTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCC
T ss_pred             eCCCCCCccccccccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCC
Confidence            55555444333333333333   4444444 4433332 244444444 44444443

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.78  E-value=1.6e-18  Score=118.88  Aligned_cols=106  Identities=20%  Similarity=0.222  Sum_probs=51.2

Q ss_pred             cccEEEccCCccccccchhhhccCCCCEEEccCCcCcCCCChHhhhcCccceEEEeccceeeeccCCCCCccccEEEcCC
Q 039528           30 HLKVFDISQNQLSGSLSSTITSLTSLEYLDLSYNNFEGPCPLSLLAHHSKLEVLVLSSTILVKTENFLPTFQLKELGLAN  109 (136)
Q Consensus        30 ~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~L~~l~l~~  109 (136)
                      +|++|++++|.+++..|..+..+++|++|++++|.+++..+......+++|+.|++++|.+...+....+++|+.|++++
T Consensus       121 ~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~~~~~~~~l~~L~~L~Ls~  200 (487)
T 3oja_A          121 GKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVKGQVVFAKLKTLDLSS  200 (487)
T ss_dssp             SCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEEECCCCCTTCCEEECCS
T ss_pred             CCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCccccccccccCCCCCEEECCC
Confidence            33444444444443334444455555555555555554333332224555555555555544443333344555555555


Q ss_pred             CCCCCCChhhhcCCCCcEEEcCCCcC
Q 039528          110 CSLNVVPTFLLHQYDLKYLDLSHNNL  135 (136)
Q Consensus       110 n~~~~~~~~~~~~~~L~~l~l~~n~l  135 (136)
                      |.++.+|..+..+++|+.|++++|.+
T Consensus       201 N~l~~~~~~~~~l~~L~~L~Ls~N~l  226 (487)
T 3oja_A          201 NKLAFMGPEFQSAAGVTWISLRNNKL  226 (487)
T ss_dssp             SCCCEECGGGGGGTTCSEEECTTSCC
T ss_pred             CCCCCCCHhHcCCCCccEEEecCCcC
Confidence            55544444455555555555555544

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=99.78  E-value=5.2e-18  Score=103.41  Aligned_cols=126  Identities=23%  Similarity=0.314  Sum_probs=104.8

Q ss_pred             ccEEEcCCCcccccCcccccCCCcccEEEccCCccccccch-hhhccCCCCEEEccCCcCcCCCChHhhhcCccceEEEe
Q 039528            7 LFELNLKGNNVEGHLPNCLKYLSHLKVFDISQNQLSGSLSS-TITSLTSLEYLDLSYNNFEGPCPLSLLAHHSKLEVLVL   85 (136)
Q Consensus         7 L~~l~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~-~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~~l~~l~l   85 (136)
                      -+.++++++.++ .+|..+..  .+++|++++|.+++..+. .+..+++|++|++++|.+++..+ ..+..+++|+++++
T Consensus        10 ~~~l~~s~~~l~-~ip~~~~~--~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~-~~~~~l~~L~~L~L   85 (192)
T 1w8a_A           10 GTTVDCTGRGLK-EIPRDIPL--HTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEP-NAFEGASHIQELQL   85 (192)
T ss_dssp             TTEEECTTSCCS-SCCSCCCT--TCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCT-TTTTTCTTCCEEEC
T ss_pred             CCEEEcCCCCcC-cCccCCCC--CCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCH-hHcCCcccCCEEEC
Confidence            368899999997 56665433  899999999999866554 48899999999999999986545 45888999999999


Q ss_pred             ccceeeecc--CCCCCccccEEEcCCCCCCC-CChhhhcCCCCcEEEcCCCcCC
Q 039528           86 SSTILVKTE--NFLPTFQLKELGLANCSLNV-VPTFLLHQYDLKYLDLSHNNLV  136 (136)
Q Consensus        86 ~~~~~~~~~--~~~~~~~L~~l~l~~n~~~~-~~~~~~~~~~L~~l~l~~n~l~  136 (136)
                      ++|.+...+  .+..+++|++|++++|.++. .|..+..+++|++|++++|+++
T Consensus        86 s~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~  139 (192)
T 1w8a_A           86 GENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFN  139 (192)
T ss_dssp             CSCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBC
T ss_pred             CCCcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCcc
Confidence            999887665  36778899999999999954 4678899999999999999874

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=99.78  E-value=3.2e-18  Score=114.25  Aligned_cols=110  Identities=21%  Similarity=0.268  Sum_probs=52.5

Q ss_pred             CCcccEEEcCCCcccccCcccccCCCcccEEEccCCccccccchhhhccCCCCEEEccCCcCcCCCChHhhhcCccceEE
Q 039528            4 LKNLFELNLKGNNVEGHLPNCLKYLSHLKVFDISQNQLSGSLSSTITSLTSLEYLDLSYNNFEGPCPLSLLAHHSKLEVL   83 (136)
Q Consensus         4 l~~L~~l~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~~l~~l   83 (136)
                      +++|++|++++|.+.+..+..+..+++|++|++++|.+++..+..+..+++|++|++++|.+. .++...+..+++|+++
T Consensus        68 l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~l~~~~~~~l~~L~~L  146 (390)
T 3o6n_A           68 FRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLS-SLPRGIFHNTPKLTTL  146 (390)
T ss_dssp             CCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEE
T ss_pred             cccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEEECCCCccC-cCCHHHhcCCCCCcEE
Confidence            344555555555554444444455555555555555554444444445555555555555554 3333333445555555


Q ss_pred             Eeccceeeecc--CCCCCccccEEEcCCCCCCC
Q 039528           84 VLSSTILVKTE--NFLPTFQLKELGLANCSLNV  114 (136)
Q Consensus        84 ~l~~~~~~~~~--~~~~~~~L~~l~l~~n~~~~  114 (136)
                      ++++|.+...+  .+..+++|++|++++|.++.
T Consensus       147 ~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~  179 (390)
T 3o6n_A          147 SMSNNNLERIEDDTFQATTSLQNLQLSSNRLTH  179 (390)
T ss_dssp             ECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSB
T ss_pred             ECCCCccCccChhhccCCCCCCEEECCCCcCCc
Confidence            55554443332  23344455555555555433

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=99.78  E-value=2e-18  Score=120.78  Aligned_cols=129  Identities=19%  Similarity=0.120  Sum_probs=66.9

Q ss_pred             cccEEEcCCCcccccCcccccCCCcccEEEccCCccccccchhhhccCCCCEEEccCCcCcCCCChHhhhcCccceEEEe
Q 039528            6 NLFELNLKGNNVEGHLPNCLKYLSHLKVFDISQNQLSGSLSSTITSLTSLEYLDLSYNNFEGPCPLSLLAHHSKLEVLVL   85 (136)
Q Consensus         6 ~L~~l~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~~l~~l~l   85 (136)
                      .+++|++++|.+++..|..|.++++|++|++++|.+.+..|..|..+++|++|++++|.+.+..+ ..+..+++|+++++
T Consensus        34 ~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-~~~~~l~~L~~L~L  112 (606)
T 3t6q_A           34 STECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAE-TALSGPKALKHLFF  112 (606)
T ss_dssp             TCCEEECTTCCCSEECTTTSTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCSEECT-TTTSSCTTCCEEEC
T ss_pred             cCcEEEccCCccCcCChhHhccCccceEEECCCCccceeChhhccCccccCeeeCCCCcccccCh-hhhcccccccEeec
Confidence            35556666666655555555556666666666655555555555555566666665555553323 23555555555555


Q ss_pred             ccceeeec--cCCCCCccccEEEcCCCCCCCCC-hhhhcCCCCcEEEcCCCcC
Q 039528           86 SSTILVKT--ENFLPTFQLKELGLANCSLNVVP-TFLLHQYDLKYLDLSHNNL  135 (136)
Q Consensus        86 ~~~~~~~~--~~~~~~~~L~~l~l~~n~~~~~~-~~~~~~~~L~~l~l~~n~l  135 (136)
                      ++|.+...  ..+..+++|++|++++|.++.++ ..+..+++|+.|++++|.+
T Consensus       113 ~~n~i~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l  165 (606)
T 3t6q_A          113 IQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAI  165 (606)
T ss_dssp             TTSCCSCGGGSCCTTCTTCCEEECCSSCCCCCCCCTTCCCTTCCEEECCSSCC
T ss_pred             cccCcccCCcchhccCCcccEEECCCCcccccCcccccCCcccCEEEcccCcc
Confidence            55554443  23344445555555555553321 1222255555555555543

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=99.78  E-value=1.1e-18  Score=113.53  Aligned_cols=134  Identities=25%  Similarity=0.178  Sum_probs=101.1

Q ss_pred             CCCCcccEEEcCCCcccccCcccccCC-----CcccEEEccCCccccccchhhhccCCCCEEEccCCcCcCCC--ChH-h
Q 039528            2 CELKNLFELNLKGNNVEGHLPNCLKYL-----SHLKVFDISQNQLSGSLSSTITSLTSLEYLDLSYNNFEGPC--PLS-L   73 (136)
Q Consensus         2 ~~l~~L~~l~l~~~~l~~~~~~~~~~l-----~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~--~~~-~   73 (136)
                      ..+++|++|++++|.+++. |..+..+     ++|++|++++|.+.+..+..+..+++|++|++++|++.+..  +.. .
T Consensus       118 ~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~  196 (312)
T 1wwl_A          118 ATGPDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALC  196 (312)
T ss_dssp             CCSCCCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHHHHSC
T ss_pred             hcCCCccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHHHHHHH
Confidence            5689999999999999976 7777776     89999999999999877789999999999999999976432  212 1


Q ss_pred             hhcCccceEEEeccceeeecc-----CCCCCccccEEEcCCCCCCCCC--hhhhcCCCCcEEEcCCCcCC
Q 039528           74 LAHHSKLEVLVLSSTILVKTE-----NFLPTFQLKELGLANCSLNVVP--TFLLHQYDLKYLDLSHNNLV  136 (136)
Q Consensus        74 ~~~~~~l~~l~l~~~~~~~~~-----~~~~~~~L~~l~l~~n~~~~~~--~~~~~~~~L~~l~l~~n~l~  136 (136)
                      +..+++|+++++++|.+...+     .+..+++|+.|++++|.++..+  ..+..+++|++|++++|.++
T Consensus       197 ~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~  266 (312)
T 1wwl_A          197 PLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLK  266 (312)
T ss_dssp             TTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSCCS
T ss_pred             hccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhhcCCCCEEECCCCccC
Confidence            267788888888888776332     1134457777777777774433  34455677777777777653

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=99.78  E-value=5.8e-19  Score=106.25  Aligned_cols=129  Identities=19%  Similarity=0.203  Sum_probs=108.0

Q ss_pred             CCCcccEEEcCCCcccccCcccccCCCcccEEEccCCccccccchhhhccCCCCEEEccCCcCcCCCChHhhhcCccceE
Q 039528            3 ELKNLFELNLKGNNVEGHLPNCLKYLSHLKVFDISQNQLSGSLSSTITSLTSLEYLDLSYNNFEGPCPLSLLAHHSKLEV   82 (136)
Q Consensus         3 ~l~~L~~l~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~~l~~   82 (136)
                      .+++|+.|++++|.++. ++......++|++|++++|.+++.  ..+..+++|++|++++|.++ .++...+..+++|+.
T Consensus        17 ~~~~L~~L~l~~n~l~~-i~~~~~~~~~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~-~~~~~~~~~l~~L~~   92 (176)
T 1a9n_A           17 NAVRDRELDLRGYKIPV-IENLGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRIC-RIGEGLDQALPDLTE   92 (176)
T ss_dssp             CTTSCEEEECTTSCCCS-CCCGGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCC-EECSCHHHHCTTCCE
T ss_pred             CcCCceEEEeeCCCCch-hHHhhhcCCCCCEEECCCCCCCcc--cccccCCCCCEEECCCCccc-ccCcchhhcCCCCCE
Confidence            56789999999999994 454333344999999999999864  67888999999999999998 455455688999999


Q ss_pred             EEeccceeeeccC---CCCCccccEEEcCCCCCCCCChh----hhcCCCCcEEEcCCCcC
Q 039528           83 LVLSSTILVKTEN---FLPTFQLKELGLANCSLNVVPTF----LLHQYDLKYLDLSHNNL  135 (136)
Q Consensus        83 l~l~~~~~~~~~~---~~~~~~L~~l~l~~n~~~~~~~~----~~~~~~L~~l~l~~n~l  135 (136)
                      +++++|.+...+.   +..+++|+.|++++|.++.+|..    ++.+++|+.++++.|..
T Consensus        93 L~L~~N~i~~~~~~~~l~~l~~L~~L~l~~N~i~~~~~~~~~~~~~l~~L~~Ld~~~n~~  152 (176)
T 1a9n_A           93 LILTNNSLVELGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLDFQKVKL  152 (176)
T ss_dssp             EECCSCCCCCGGGGGGGGGCTTCCEEECCSSGGGGSTTHHHHHHHHCTTCSEETTEECCH
T ss_pred             EECCCCcCCcchhhHhhhcCCCCCEEEecCCCCCCcHhHHHHHHHHCCccceeCCCcCCH
Confidence            9999998877653   56777999999999999888874    89999999999988763

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=99.78  E-value=2.6e-18  Score=117.29  Aligned_cols=131  Identities=22%  Similarity=0.267  Sum_probs=115.7

Q ss_pred             CcccEEEcCCCcccccCcccccCCCcccEEEccCCccccccchhhhccCCCCEEEccCCcCcCCCChHhhhcCccceEEE
Q 039528            5 KNLFELNLKGNNVEGHLPNCLKYLSHLKVFDISQNQLSGSLSSTITSLTSLEYLDLSYNNFEGPCPLSLLAHHSKLEVLV   84 (136)
Q Consensus         5 ~~L~~l~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~~l~~l~   84 (136)
                      +.++.|++++|.+++..+..|..+++|++|++++|.+++..|..+..+++|++|++++|.+. .++...+..+++|++++
T Consensus        32 ~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~  110 (477)
T 2id5_A           32 TETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLK-LIPLGVFTGLSNLTKLD  110 (477)
T ss_dssp             TTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCC-SCCTTSSTTCTTCCEEE
T ss_pred             CCCcEEECCCCccceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCcCC-ccCcccccCCCCCCEEE
Confidence            46899999999999888889999999999999999999888899999999999999999998 55656678899999999


Q ss_pred             eccceeeecc--CCCCCccccEEEcCCCCCCCC-ChhhhcCCCCcEEEcCCCcCC
Q 039528           85 LSSTILVKTE--NFLPTFQLKELGLANCSLNVV-PTFLLHQYDLKYLDLSHNNLV  136 (136)
Q Consensus        85 l~~~~~~~~~--~~~~~~~L~~l~l~~n~~~~~-~~~~~~~~~L~~l~l~~n~l~  136 (136)
                      +++|.+....  .+..+++|+.|++++|.++.+ +..+..+++|+.|++++|.++
T Consensus       111 Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~  165 (477)
T 2id5_A          111 ISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLT  165 (477)
T ss_dssp             CTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCS
T ss_pred             CCCCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCc
Confidence            9999876653  567788999999999999654 468899999999999999764

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=99.78  E-value=5.5e-18  Score=110.12  Aligned_cols=83  Identities=18%  Similarity=0.242  Sum_probs=39.2

Q ss_pred             hhccCCCCEEEccCCcCcCCCChHhhhcCccceEEEeccceeeeccCCCCCccccEEEcCCCCCCCCChhhhcCCCCcEE
Q 039528           49 ITSLTSLEYLDLSYNNFEGPCPLSLLAHHSKLEVLVLSSTILVKTENFLPTFQLKELGLANCSLNVVPTFLLHQYDLKYL  128 (136)
Q Consensus        49 ~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~L~~l  128 (136)
                      +..+++|++|++++|.+.+ .+.  +..+++|+.+++++|.+...+.+..+++|+.|++++|.++.++. +..+++|+.|
T Consensus       125 l~~l~~L~~L~l~~n~l~~-~~~--l~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L  200 (308)
T 1h6u_A          125 LAGLSNLQVLYLDLNQITN-ISP--LAGLTNLQYLSIGNAQVSDLTPLANLSKLTTLKADDNKISDISP-LASLPNLIEV  200 (308)
T ss_dssp             GTTCTTCCEEECCSSCCCC-CGG--GGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCCCGG-GGGCTTCCEE
T ss_pred             hcCCCCCCEEECCCCccCc-Ccc--ccCCCCccEEEccCCcCCCChhhcCCCCCCEEECCCCccCcChh-hcCCCCCCEE
Confidence            3344444444444444432 111  33444455555555444443334444455555555555544443 4555555555


Q ss_pred             EcCCCcC
Q 039528          129 DLSHNNL  135 (136)
Q Consensus       129 ~l~~n~l  135 (136)
                      ++++|.+
T Consensus       201 ~L~~N~l  207 (308)
T 1h6u_A          201 HLKNNQI  207 (308)
T ss_dssp             ECTTSCC
T ss_pred             EccCCcc
Confidence            5555554

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=99.78  E-value=1.1e-17  Score=108.77  Aligned_cols=125  Identities=27%  Similarity=0.362  Sum_probs=82.5

Q ss_pred             CCCcccEEEcCCCcccccCcccccCCCcccEEEccCCccccccchhhhccCCCCEEEccCCcCcCCCChHhhhcCccceE
Q 039528            3 ELKNLFELNLKGNNVEGHLPNCLKYLSHLKVFDISQNQLSGSLSSTITSLTSLEYLDLSYNNFEGPCPLSLLAHHSKLEV   82 (136)
Q Consensus         3 ~l~~L~~l~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~~l~~   82 (136)
                      .+++|++|++++|.+.+.. . +..+++|++|++++|.+++.  ..+..+++|++|++++|.+.+ ++ . +..+++|++
T Consensus        61 ~l~~L~~L~L~~n~i~~~~-~-~~~l~~L~~L~L~~n~l~~~--~~~~~l~~L~~L~l~~n~l~~-~~-~-l~~l~~L~~  133 (308)
T 1h6u_A           61 YLNNLIGLELKDNQITDLA-P-LKNLTKITELELSGNPLKNV--SAIAGLQSIKTLDLTSTQITD-VT-P-LAGLSNLQV  133 (308)
T ss_dssp             GCTTCCEEECCSSCCCCCG-G-GTTCCSCCEEECCSCCCSCC--GGGTTCTTCCEEECTTSCCCC-CG-G-GTTCTTCCE
T ss_pred             ccCCCCEEEccCCcCCCCh-h-HccCCCCCEEEccCCcCCCc--hhhcCCCCCCEEECCCCCCCC-ch-h-hcCCCCCCE
Confidence            4566777777777776433 3 66777777777777776642  346667777777777777763 33 2 566677777


Q ss_pred             EEeccceeeeccCCCCCccccEEEcCCCCCCCCChhhhcCCCCcEEEcCCCcC
Q 039528           83 LVLSSTILVKTENFLPTFQLKELGLANCSLNVVPTFLLHQYDLKYLDLSHNNL  135 (136)
Q Consensus        83 l~l~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~L~~l~l~~n~l  135 (136)
                      +++++|.+...+.+..+++|+.|++++|.++.++. +..+++|+.|++++|.+
T Consensus       134 L~l~~n~l~~~~~l~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~l~~n~l  185 (308)
T 1h6u_A          134 LYLDLNQITNISPLAGLTNLQYLSIGNAQVSDLTP-LANLSKLTTLKADDNKI  185 (308)
T ss_dssp             EECCSSCCCCCGGGGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCC
T ss_pred             EECCCCccCcCccccCCCCccEEEccCCcCCCChh-hcCCCCCCEEECCCCcc
Confidence            77777766655555556677777777777766554 66677777777777665

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=99.77  E-value=2e-18  Score=108.42  Aligned_cols=134  Identities=14%  Similarity=0.165  Sum_probs=78.2

Q ss_pred             CCCCcccEEEcCCCc-ccccCcccccCCCcccEEEccC-CccccccchhhhccCCCCEEEccCCcCcC------------
Q 039528            2 CELKNLFELNLKGNN-VEGHLPNCLKYLSHLKVFDISQ-NQLSGSLSSTITSLTSLEYLDLSYNNFEG------------   67 (136)
Q Consensus         2 ~~l~~L~~l~l~~~~-l~~~~~~~~~~l~~L~~L~l~~-~~~~~~~~~~~~~~~~l~~l~l~~~~~~~------------   67 (136)
                      .++++|+.|++++|. ++...+..|.++++|++|++++ |.+++..+..|..+++|++|++++|.+++            
T Consensus        52 ~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L~l~~n~l~~lp~~~~l~~L~~  131 (239)
T 2xwt_C           52 SNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLGIFNTGLKMFPDLTKVYSTDI  131 (239)
T ss_dssp             TTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEEEEEEECCCSCCCCTTCCBCCS
T ss_pred             cCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEEeCCCCCCcccccccccccccc
Confidence            346667777777775 6655555666667777777766 66664444555566666666666555442            


Q ss_pred             -------------CCChHhhhcCccce-EEEeccceeeeccC-CCCCccccEEEcCCCC-CCCCC-hhhhcC-CCCcEEE
Q 039528           68 -------------PCPLSLLAHHSKLE-VLVLSSTILVKTEN-FLPTFQLKELGLANCS-LNVVP-TFLLHQ-YDLKYLD  129 (136)
Q Consensus        68 -------------~~~~~~~~~~~~l~-~l~l~~~~~~~~~~-~~~~~~L~~l~l~~n~-~~~~~-~~~~~~-~~L~~l~  129 (136)
                                   .++...+..+++|+ ++++++|.+...+. .....+|+.|++++|+ ++.++ ..+..+ ++|+.|+
T Consensus       132 L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~~i~~~~~~~~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~  211 (239)
T 2xwt_C          132 FFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTSVQGYAFNGTKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLD  211 (239)
T ss_dssp             EEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCCEECTTTTTTCEEEEEECTTCTTCCEECTTTTTTCSBCCSEEE
T ss_pred             ccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCcccCHhhcCCCCCCEEEcCCCCCcccCCHHHhhccccCCcEEE
Confidence                         22223355556666 66666665544431 1122466677777764 65554 345566 6777777


Q ss_pred             cCCCcC
Q 039528          130 LSHNNL  135 (136)
Q Consensus       130 l~~n~l  135 (136)
                      +++|.+
T Consensus       212 l~~N~l  217 (239)
T 2xwt_C          212 VSQTSV  217 (239)
T ss_dssp             CTTCCC
T ss_pred             CCCCcc
Confidence            777665

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=99.77  E-value=5.1e-19  Score=127.94  Aligned_cols=133  Identities=14%  Similarity=0.118  Sum_probs=117.2

Q ss_pred             CCCCcccEEEcCCCcccc-----------------cCccccc--CCCcccEEEccCCccccccchhhhccCCCCEEEccC
Q 039528            2 CELKNLFELNLKGNNVEG-----------------HLPNCLK--YLSHLKVFDISQNQLSGSLSSTITSLTSLEYLDLSY   62 (136)
Q Consensus         2 ~~l~~L~~l~l~~~~l~~-----------------~~~~~~~--~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~l~~   62 (136)
                      .++++|+.|++++|.+++                 .+|..+.  .+++|++|++++|.+.+..|..+..+++|++|++++
T Consensus       445 ~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~  524 (876)
T 4ecn_A          445 QRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIAC  524 (876)
T ss_dssp             GGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCEEECTT
T ss_pred             hcCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccChHHHhCCCCCCEEECcC
Confidence            467899999999999997                 3888877  999999999999999889999999999999999999


Q ss_pred             Cc-CcC-CCChHhhhcC-------ccceEEEeccceeeeccC---CCCCccccEEEcCCCCCCCCChhhhcCCCCcEEEc
Q 039528           63 NN-FEG-PCPLSLLAHH-------SKLEVLVLSSTILVKTEN---FLPTFQLKELGLANCSLNVVPTFLLHQYDLKYLDL  130 (136)
Q Consensus        63 ~~-~~~-~~~~~~~~~~-------~~l~~l~l~~~~~~~~~~---~~~~~~L~~l~l~~n~~~~~~~~~~~~~~L~~l~l  130 (136)
                      |+ +++ .+|.. +..+       ++|++|++++|.+...+.   +..+++|+.|++++|.++.+| .++.+++|+.|++
T Consensus       525 N~~lsg~~iP~~-i~~L~~~~~~l~~L~~L~Ls~N~L~~ip~~~~l~~L~~L~~L~Ls~N~l~~lp-~~~~L~~L~~L~L  602 (876)
T 4ecn_A          525 NRGISAAQLKAD-WTRLADDEDTGPKIQIFYMGYNNLEEFPASASLQKMVKLGLLDCVHNKVRHLE-AFGTNVKLTDLKL  602 (876)
T ss_dssp             CTTSCHHHHHHH-HHHHHHCTTTTTTCCEEECCSSCCCBCCCHHHHTTCTTCCEEECTTSCCCBCC-CCCTTSEESEEEC
T ss_pred             CCCcccccchHH-HHhhhhcccccCCccEEEeeCCcCCccCChhhhhcCCCCCEEECCCCCcccch-hhcCCCcceEEEC
Confidence            98 876 56644 4444       499999999998887765   678889999999999999999 8999999999999


Q ss_pred             CCCcCC
Q 039528          131 SHNNLV  136 (136)
Q Consensus       131 ~~n~l~  136 (136)
                      ++|.++
T Consensus       603 s~N~l~  608 (876)
T 4ecn_A          603 DYNQIE  608 (876)
T ss_dssp             CSSCCS
T ss_pred             cCCccc
Confidence            999874

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=99.77  E-value=1.2e-18  Score=115.38  Aligned_cols=132  Identities=23%  Similarity=0.190  Sum_probs=113.1

Q ss_pred             CCCcccEEEcCCCcccccCcccccCCCcccEEEccCCccccccchhhhccCCCCEEEccCCcCcCCCChHhhhcCccceE
Q 039528            3 ELKNLFELNLKGNNVEGHLPNCLKYLSHLKVFDISQNQLSGSLSSTITSLTSLEYLDLSYNNFEGPCPLSLLAHHSKLEV   82 (136)
Q Consensus         3 ~l~~L~~l~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~~l~~   82 (136)
                      .+++|+.|++++|.+++..+..|..+++|++|++++|.++...+..|..+++|++|++++|.+.+ ++...+..+++|+.
T Consensus        62 ~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~-~~~~~~~~l~~L~~  140 (361)
T 2xot_A           62 RLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNHLHTLDEFLFSDLQALEVLLLYNNHIVV-VDRNAFEDMAQLQK  140 (361)
T ss_dssp             CCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCE-ECTTTTTTCTTCCE
T ss_pred             cccccCEEECCCCcCCccChhhccCCCCCCEEECCCCcCCcCCHHHhCCCcCCCEEECCCCcccE-ECHHHhCCcccCCE
Confidence            68899999999999998777889999999999999999987777789999999999999999984 43355889999999


Q ss_pred             EEeccceeeeccC--C---CCCccccEEEcCCCCCCCCCh-hhhcCCC--CcEEEcCCCcC
Q 039528           83 LVLSSTILVKTEN--F---LPTFQLKELGLANCSLNVVPT-FLLHQYD--LKYLDLSHNNL  135 (136)
Q Consensus        83 l~l~~~~~~~~~~--~---~~~~~L~~l~l~~n~~~~~~~-~~~~~~~--L~~l~l~~n~l  135 (136)
                      |++++|.+...+.  +   ..+++|+.|++++|.++.+|. .+..++.  ++.+++++|++
T Consensus       141 L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~~~l~~l~l~~N~~  201 (361)
T 2xot_A          141 LYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNGLYLHNNPL  201 (361)
T ss_dssp             EECCSSCCCSCCGGGTC----CTTCCEEECCSSCCCCCCHHHHHHSCHHHHTTEECCSSCE
T ss_pred             EECCCCcCCeeCHHHhcCcccCCcCCEEECCCCCCCccCHHHhhhccHhhcceEEecCCCc
Confidence            9999998877652  2   457799999999999988884 6777776  48899999976

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=99.77  E-value=2.4e-18  Score=113.53  Aligned_cols=131  Identities=22%  Similarity=0.220  Sum_probs=114.6

Q ss_pred             CcccEEEcCCCcccccCcccccCCCcccEEEccCCccccccchhhhccCCCCEEEccCCcCcCCCChHhhhcCccceEEE
Q 039528            5 KNLFELNLKGNNVEGHLPNCLKYLSHLKVFDISQNQLSGSLSSTITSLTSLEYLDLSYNNFEGPCPLSLLAHHSKLEVLV   84 (136)
Q Consensus         5 ~~L~~l~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~~l~~l~   84 (136)
                      +++++|++++|.+++..+..+..+++|++|++++|.+++..+..+..+++|++|++++|.++ .++...+..+++|++++
T Consensus        52 ~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~-~~~~~~~~~l~~L~~L~  130 (353)
T 2z80_A           52 EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLS-NLSSSWFKPLSSLTFLN  130 (353)
T ss_dssp             TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCS-SCCHHHHTTCTTCSEEE
T ss_pred             ccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCcCC-cCCHhHhCCCccCCEEE
Confidence            47999999999999776778999999999999999999777888999999999999999998 56666688999999999


Q ss_pred             eccceeeeccC---CCCCccccEEEcCCCC-CCCCC-hhhhcCCCCcEEEcCCCcCC
Q 039528           85 LSSTILVKTEN---FLPTFQLKELGLANCS-LNVVP-TFLLHQYDLKYLDLSHNNLV  136 (136)
Q Consensus        85 l~~~~~~~~~~---~~~~~~L~~l~l~~n~-~~~~~-~~~~~~~~L~~l~l~~n~l~  136 (136)
                      +++|.+...+.   +..+++|++|++++|. ++.++ ..++.+++|+.|++++|.++
T Consensus       131 L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~  187 (353)
T 2z80_A          131 LLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQ  187 (353)
T ss_dssp             CTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCC
T ss_pred             CCCCCCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCCcC
Confidence            99998876654   5778899999999995 66664 57899999999999998763

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=99.77  E-value=1.8e-19  Score=126.91  Aligned_cols=132  Identities=15%  Similarity=0.182  Sum_probs=117.6

Q ss_pred             CCCCcccEEEcCCCccccc-----------------Cccccc--CCCcccEEEccCCccccccchhhhccCCCCEEEccC
Q 039528            2 CELKNLFELNLKGNNVEGH-----------------LPNCLK--YLSHLKVFDISQNQLSGSLSSTITSLTSLEYLDLSY   62 (136)
Q Consensus         2 ~~l~~L~~l~l~~~~l~~~-----------------~~~~~~--~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~l~~   62 (136)
                      .++++|++|++++|.+++.                 +|..+.  ++++|++|++++|.+.+..|..+..+++|++|++++
T Consensus       203 ~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~  282 (636)
T 4eco_A          203 MRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVAC  282 (636)
T ss_dssp             GGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCCEEECTT
T ss_pred             hcccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChHHHhcCCCCCEEECcC
Confidence            4688999999999999985                 888888  999999999999999889999999999999999999


Q ss_pred             Cc-CcC-CCChHhhhcC------ccceEEEeccceeeeccC---CCCCccccEEEcCCCCCC-CCChhhhcCCCCcEEEc
Q 039528           63 NN-FEG-PCPLSLLAHH------SKLEVLVLSSTILVKTEN---FLPTFQLKELGLANCSLN-VVPTFLLHQYDLKYLDL  130 (136)
Q Consensus        63 ~~-~~~-~~~~~~~~~~------~~l~~l~l~~~~~~~~~~---~~~~~~L~~l~l~~n~~~-~~~~~~~~~~~L~~l~l  130 (136)
                      |+ +++ .+|.. +..+      ++|+++++++|.+...+.   +..+++|++|++++|.++ .+| .++.+++|+.|++
T Consensus       283 n~~l~~~~lp~~-~~~L~~~~~l~~L~~L~L~~n~l~~ip~~~~l~~l~~L~~L~L~~N~l~g~ip-~~~~l~~L~~L~L  360 (636)
T 4eco_A          283 NRGISGEQLKDD-WQALADAPVGEKIQIIYIGYNNLKTFPVETSLQKMKKLGMLECLYNQLEGKLP-AFGSEIKLASLNL  360 (636)
T ss_dssp             CTTSCHHHHHHH-HHHHHHSGGGGTCCEEECCSSCCSSCCCHHHHTTCTTCCEEECCSCCCEEECC-CCEEEEEESEEEC
T ss_pred             CCCCccccchHH-HHhhhccccCCCCCEEECCCCcCCccCchhhhccCCCCCEEeCcCCcCccchh-hhCCCCCCCEEEC
Confidence            98 886 56654 5444      999999999998877665   677889999999999995 999 8999999999999


Q ss_pred             CCCcC
Q 039528          131 SHNNL  135 (136)
Q Consensus       131 ~~n~l  135 (136)
                      ++|.+
T Consensus       361 ~~N~l  365 (636)
T 4eco_A          361 AYNQI  365 (636)
T ss_dssp             CSSEE
T ss_pred             CCCcc
Confidence            99975

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=99.77  E-value=7.6e-18  Score=107.30  Aligned_cols=123  Identities=25%  Similarity=0.360  Sum_probs=82.7

Q ss_pred             CCcccEEEcCCCcccccCcccccCCCcccEEEccCCccccccchhhhccCCCCEEEccCCcCcCCCChHhhhcCccceEE
Q 039528            4 LKNLFELNLKGNNVEGHLPNCLKYLSHLKVFDISQNQLSGSLSSTITSLTSLEYLDLSYNNFEGPCPLSLLAHHSKLEVL   83 (136)
Q Consensus         4 l~~L~~l~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~~l~~l   83 (136)
                      +++|+.|++++|.++. ++ .+..+++|++|++++|.+++..+  +..+++|++|++++|++++ ++.  ... ++|+.+
T Consensus        40 l~~L~~L~l~~n~i~~-l~-~l~~l~~L~~L~L~~N~i~~~~~--l~~l~~L~~L~L~~N~l~~-l~~--~~~-~~L~~L  111 (263)
T 1xeu_A           40 LSGVQNFNGDNSNIQS-LA-GMQFFTNLKELHLSHNQISDLSP--LKDLTKLEELSVNRNRLKN-LNG--IPS-ACLSRL  111 (263)
T ss_dssp             HTTCSEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCCCCGG--GTTCSSCCEEECCSSCCSC-CTT--CCC-SSCCEE
T ss_pred             cCcCcEEECcCCCccc-ch-HHhhCCCCCEEECCCCccCCChh--hccCCCCCEEECCCCccCC-cCc--ccc-CcccEE
Confidence            4567777777777773 33 56677777777777777764433  6677777777777777763 332  222 667777


Q ss_pred             EeccceeeeccCCCCCccccEEEcCCCCCCCCChhhhcCCCCcEEEcCCCcC
Q 039528           84 VLSSTILVKTENFLPTFQLKELGLANCSLNVVPTFLLHQYDLKYLDLSHNNL  135 (136)
Q Consensus        84 ~l~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~L~~l~l~~n~l  135 (136)
                      ++++|.+...+.+..+++|+.|++++|.++.++ .+..+++|+.|++++|.+
T Consensus       112 ~L~~N~l~~~~~l~~l~~L~~L~Ls~N~i~~~~-~l~~l~~L~~L~L~~N~i  162 (263)
T 1xeu_A          112 FLDNNELRDTDSLIHLKNLEILSIRNNKLKSIV-MLGFLSKLEVLDLHGNEI  162 (263)
T ss_dssp             ECCSSCCSBSGGGTTCTTCCEEECTTSCCCBCG-GGGGCTTCCEEECTTSCC
T ss_pred             EccCCccCCChhhcCcccccEEECCCCcCCCCh-HHccCCCCCEEECCCCcC
Confidence            777776666655666667777777777776654 566677777777777665

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=99.77  E-value=3.3e-18  Score=111.54  Aligned_cols=128  Identities=22%  Similarity=0.193  Sum_probs=72.0

Q ss_pred             CcccEEEcCCCcccccCcccccCCCcccEEEccCCccccccchhhh-ccCCCCEEEccCCcCcCCCChHhhhcCccceEE
Q 039528            5 KNLFELNLKGNNVEGHLPNCLKYLSHLKVFDISQNQLSGSLSSTIT-SLTSLEYLDLSYNNFEGPCPLSLLAHHSKLEVL   83 (136)
Q Consensus         5 ~~L~~l~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~-~~~~l~~l~l~~~~~~~~~~~~~~~~~~~l~~l   83 (136)
                      ++|++|++++|.+++..+..+..+++|++|++++|.+++..+..+. .+++|++|++++|.+++. +.  ...+++|+++
T Consensus       120 ~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~-~~--~~~l~~L~~L  196 (317)
T 3o53_A          120 QGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDV-KG--QVVFAKLKTL  196 (317)
T ss_dssp             SSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEE-EC--CCCCTTCCEE
T ss_pred             CCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcccHHHHhhccCcCCEEECCCCcCccc-cc--ccccccCCEE
Confidence            4455555555555544444555566666666666666544444442 456666666666665522 21  2235666666


Q ss_pred             Eeccceeeecc-CCCCCccccEEEcCCCCCCCCChhhhcCCCCcEEEcCCCcC
Q 039528           84 VLSSTILVKTE-NFLPTFQLKELGLANCSLNVVPTFLLHQYDLKYLDLSHNNL  135 (136)
Q Consensus        84 ~l~~~~~~~~~-~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~L~~l~l~~n~l  135 (136)
                      ++++|.+...+ .+..+++|+.|++++|.++.+|..+..+++|+.+++++|++
T Consensus       197 ~Ls~N~l~~l~~~~~~l~~L~~L~L~~N~l~~l~~~~~~l~~L~~L~l~~N~~  249 (317)
T 3o53_A          197 DLSSNKLAFMGPEFQSAAGVTWISLRNNKLVLIEKALRFSQNLEHFDLRGNGF  249 (317)
T ss_dssp             ECCSSCCCEECGGGGGGTTCSEEECTTSCCCEECTTCCCCTTCCEEECTTCCC
T ss_pred             ECCCCcCCcchhhhcccCcccEEECcCCcccchhhHhhcCCCCCEEEccCCCc
Confidence            66666554442 23445566666666666666666666666666666666654

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=99.77  E-value=8.1e-18  Score=110.11  Aligned_cols=129  Identities=22%  Similarity=0.239  Sum_probs=74.3

Q ss_pred             CCcccEEEcCCCcccc--cCcccccCCCcccEEEccCCccccccchhhhccCCCCEEEccCCcCcCCCChHhhhcCccce
Q 039528            4 LKNLFELNLKGNNVEG--HLPNCLKYLSHLKVFDISQNQLSGSLSSTITSLTSLEYLDLSYNNFEGPCPLSLLAHHSKLE   81 (136)
Q Consensus         4 l~~L~~l~l~~~~l~~--~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~~l~   81 (136)
                      +++|+.+++++|.+..  ..+..+..+++|++|++++|.++. +|..+  .++|++|++++|.+.+..+ ..+..+++|+
T Consensus       144 l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~-l~~~~--~~~L~~L~l~~n~l~~~~~-~~~~~l~~L~  219 (330)
T 1xku_A          144 LNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITT-IPQGL--PPSLTELHLDGNKITKVDA-ASLKGLNNLA  219 (330)
T ss_dssp             CTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCCS-CCSSC--CTTCSEEECTTSCCCEECT-GGGTTCTTCC
T ss_pred             CccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCcccc-CCccc--cccCCEEECCCCcCCccCH-HHhcCCCCCC
Confidence            4444555555554432  233444445555555555544432 22222  1455555555555553323 3466677777


Q ss_pred             EEEeccceeeecc--CCCCCccccEEEcCCCCCCCCChhhhcCCCCcEEEcCCCcCC
Q 039528           82 VLVLSSTILVKTE--NFLPTFQLKELGLANCSLNVVPTFLLHQYDLKYLDLSHNNLV  136 (136)
Q Consensus        82 ~l~l~~~~~~~~~--~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~L~~l~l~~n~l~  136 (136)
                      .+++++|.+...+  .+..+++|+.|++++|.++.+|..+..+++|++|++++|.++
T Consensus       220 ~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~lp~~l~~l~~L~~L~l~~N~i~  276 (330)
T 1xku_A          220 KLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVKVPGGLADHKYIQVVYLHNNNIS  276 (330)
T ss_dssp             EEECCSSCCCEECTTTGGGSTTCCEEECCSSCCSSCCTTTTTCSSCCEEECCSSCCC
T ss_pred             EEECCCCcCceeChhhccCCCCCCEEECCCCcCccCChhhccCCCcCEEECCCCcCC
Confidence            7777777665543  345566777777777777777777777777777777777663

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=99.77  E-value=3.1e-18  Score=111.63  Aligned_cols=128  Identities=20%  Similarity=0.194  Sum_probs=104.0

Q ss_pred             cccEEEcCCCcccccCcccccCCCcccEEEccCCccccccchhhhccCCCCEEEccCCcCcCCCChHhhhcCccceEEEe
Q 039528            6 NLFELNLKGNNVEGHLPNCLKYLSHLKVFDISQNQLSGSLSSTITSLTSLEYLDLSYNNFEGPCPLSLLAHHSKLEVLVL   85 (136)
Q Consensus         6 ~L~~l~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~~l~~l~l   85 (136)
                      +|++|++++|.+++..+   ..+++|++|++++|.+++..+..+..+++|++|++++|.+.+..+......+++|+++++
T Consensus       100 ~L~~L~l~~n~l~~~~~---~~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L  176 (317)
T 3o53_A          100 SIETLHAANNNISRVSC---SRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNL  176 (317)
T ss_dssp             TCCEEECCSSCCSEEEE---CCCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEEC
T ss_pred             CcCEEECCCCccCCcCc---cccCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcccHHHHhhccCcCCEEEC
Confidence            44444455554443322   346789999999999997777788899999999999999985545444457899999999


Q ss_pred             ccceeeeccCCCCCccccEEEcCCCCCCCCChhhhcCCCCcEEEcCCCcCC
Q 039528           86 SSTILVKTENFLPTFQLKELGLANCSLNVVPTFLLHQYDLKYLDLSHNNLV  136 (136)
Q Consensus        86 ~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~L~~l~l~~n~l~  136 (136)
                      ++|.+...+....+++|++|++++|.++.+|..+..+++|+.|++++|.++
T Consensus       177 ~~N~l~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~L~~L~L~~N~l~  227 (317)
T 3o53_A          177 QYNFIYDVKGQVVFAKLKTLDLSSNKLAFMGPEFQSAAGVTWISLRNNKLV  227 (317)
T ss_dssp             TTSCCCEEECCCCCTTCCEEECCSSCCCEECGGGGGGTTCSEEECTTSCCC
T ss_pred             CCCcCcccccccccccCCEEECCCCcCCcchhhhcccCcccEEECcCCccc
Confidence            999988777666678999999999999999888999999999999999874

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.77  E-value=3.4e-18  Score=117.22  Aligned_cols=130  Identities=22%  Similarity=0.175  Sum_probs=112.9

Q ss_pred             CCcccEEEcCCCcccccCcccccCCCcccEEEccCCccccccchhhh-ccCCCCEEEccCCcCcCCCChHhhhcCccceE
Q 039528            4 LKNLFELNLKGNNVEGHLPNCLKYLSHLKVFDISQNQLSGSLSSTIT-SLTSLEYLDLSYNNFEGPCPLSLLAHHSKLEV   82 (136)
Q Consensus         4 l~~L~~l~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~-~~~~l~~l~l~~~~~~~~~~~~~~~~~~~l~~   82 (136)
                      +++|+.|++++|.+++..|..+..+++|++|++++|.+++..|..+. .+++|++|++++|.+++..+   ...+++|+.
T Consensus       119 l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~~~~~---~~~l~~L~~  195 (487)
T 3oja_A          119 GQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVKG---QVVFAKLKT  195 (487)
T ss_dssp             CSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEEEC---CCCCTTCCE
T ss_pred             cCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCccccccc---cccCCCCCE
Confidence            56788899999999887788889999999999999999987787776 78999999999999985422   346899999


Q ss_pred             EEeccceeeecc-CCCCCccccEEEcCCCCCCCCChhhhcCCCCcEEEcCCCcCC
Q 039528           83 LVLSSTILVKTE-NFLPTFQLKELGLANCSLNVVPTFLLHQYDLKYLDLSHNNLV  136 (136)
Q Consensus        83 l~l~~~~~~~~~-~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~L~~l~l~~n~l~  136 (136)
                      +++++|.+...+ .+..+++|+.|++++|.++.+|..+..+++|+.+++++|.++
T Consensus       196 L~Ls~N~l~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~l~~l~~L~~L~l~~N~l~  250 (487)
T 3oja_A          196 LDLSSNKLAFMGPEFQSAAGVTWISLRNNKLVLIEKALRFSQNLEHFDLRGNGFH  250 (487)
T ss_dssp             EECCSSCCCEECGGGGGGTTCSEEECTTSCCCEECTTCCCCTTCCEEECTTCCBC
T ss_pred             EECCCCCCCCCCHhHcCCCCccEEEecCCcCcccchhhccCCCCCEEEcCCCCCc
Confidence            999999886664 456777999999999999989999999999999999999874

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=99.77  E-value=2.7e-18  Score=105.03  Aligned_cols=127  Identities=17%  Similarity=0.213  Sum_probs=108.3

Q ss_pred             CCcccEEEcCCCcccccCcccccCCCcccEEEccCCccccccchhhhccCCCCEEEccCCcCcCCCChHhhhcCccceEE
Q 039528            4 LKNLFELNLKGNNVEGHLPNCLKYLSHLKVFDISQNQLSGSLSSTITSLTSLEYLDLSYNNFEGPCPLSLLAHHSKLEVL   83 (136)
Q Consensus         4 l~~L~~l~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~~l~~l   83 (136)
                      +++|+.+++++|.+. .++ .+..+++|++|++++|.++.  +..+..+++|++|++++|.+++..+.. +..+++|+++
T Consensus        43 l~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~l~~n~~~~--~~~l~~l~~L~~L~l~~n~l~~~~~~~-l~~l~~L~~L  117 (197)
T 4ezg_A           43 MNSLTYITLANINVT-DLT-GIEYAHNIKDLTINNIHATN--YNPISGLSNLERLRIMGKDVTSDKIPN-LSGLTSLTLL  117 (197)
T ss_dssp             HHTCCEEEEESSCCS-CCT-TGGGCTTCSEEEEESCCCSC--CGGGTTCTTCCEEEEECTTCBGGGSCC-CTTCTTCCEE
T ss_pred             cCCccEEeccCCCcc-ChH-HHhcCCCCCEEEccCCCCCc--chhhhcCCCCCEEEeECCccCcccChh-hcCCCCCCEE
Confidence            567999999999998 455 68899999999999997753  357888999999999999998544533 7789999999


Q ss_pred             Eeccceeee--ccCCCCCccccEEEcCCCC-CCCCChhhhcCCCCcEEEcCCCcCC
Q 039528           84 VLSSTILVK--TENFLPTFQLKELGLANCS-LNVVPTFLLHQYDLKYLDLSHNNLV  136 (136)
Q Consensus        84 ~l~~~~~~~--~~~~~~~~~L~~l~l~~n~-~~~~~~~~~~~~~L~~l~l~~n~l~  136 (136)
                      ++++|.+..  ...+..+++|+.|++++|. ++.++ .+..+++|+.|++++|.++
T Consensus       118 ~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~-~l~~l~~L~~L~l~~n~i~  172 (197)
T 4ezg_A          118 DISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIM-PLKTLPELKSLNIQFDGVH  172 (197)
T ss_dssp             ECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCCCCG-GGGGCSSCCEEECTTBCCC
T ss_pred             EecCCccCcHhHHHHhhCCCCCEEEccCCCCccccH-hhcCCCCCCEEECCCCCCc
Confidence            999998876  3456778899999999998 78887 7899999999999999874

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.77  E-value=6e-18  Score=118.44  Aligned_cols=111  Identities=22%  Similarity=0.276  Sum_probs=56.7

Q ss_pred             CCcccEEEcCCCcccccCcccccCCCcccEEEccCCccccccchhhhccCCCCEEEccCCcCcCCCChHhhhcCccceEE
Q 039528            4 LKNLFELNLKGNNVEGHLPNCLKYLSHLKVFDISQNQLSGSLSSTITSLTSLEYLDLSYNNFEGPCPLSLLAHHSKLEVL   83 (136)
Q Consensus         4 l~~L~~l~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~~l~~l   83 (136)
                      +++|+.|++++|.+.+..+..|..+++|++|++++|.+++..+..+..+++|++|++++|.+. .+|...+..+++|++|
T Consensus        74 l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~l~~~~~~~l~~L~~L  152 (597)
T 3oja_B           74 FRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLS-SLPRGIFHNTPKLTTL  152 (597)
T ss_dssp             CCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEE
T ss_pred             CCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEEeeCCCCC-CCCHHHhccCCCCCEE
Confidence            345555555555555444445555555555555555555444444555555555555555554 3333334455555555


Q ss_pred             Eeccceeeecc--CCCCCccccEEEcCCCCCCCC
Q 039528           84 VLSSTILVKTE--NFLPTFQLKELGLANCSLNVV  115 (136)
Q Consensus        84 ~l~~~~~~~~~--~~~~~~~L~~l~l~~n~~~~~  115 (136)
                      ++++|.+...+  .+..+++|+.|++++|.++.+
T Consensus       153 ~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~  186 (597)
T 3oja_B          153 SMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHV  186 (597)
T ss_dssp             ECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBC
T ss_pred             EeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCc
Confidence            55555443332  234444555555555555433

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=99.77  E-value=7.1e-18  Score=114.40  Aligned_cols=131  Identities=24%  Similarity=0.285  Sum_probs=110.6

Q ss_pred             CcccEEEcCCCcccccCcccccCCCcccEEEccCCccccc-cchhhhccCCCCEEEccCCcCcCCCChHhhhcCccceEE
Q 039528            5 KNLFELNLKGNNVEGHLPNCLKYLSHLKVFDISQNQLSGS-LSSTITSLTSLEYLDLSYNNFEGPCPLSLLAHHSKLEVL   83 (136)
Q Consensus         5 ~~L~~l~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~-~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~~l~~l   83 (136)
                      +++++|++++|.+++..|..+..+++|++|++++|.+.+. .+..+..+++|++|++++|.+.+..+ ..+..+++|+++
T Consensus        30 ~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~-~~~~~l~~L~~L  108 (455)
T 3v47_A           30 AHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLET-GAFNGLANLEVL  108 (455)
T ss_dssp             TTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCTTCEECT-TTTTTCTTCCEE
T ss_pred             CccCEEEecCCccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCCCccCccCh-hhccCcccCCEE
Confidence            5689999999999988888999999999999999988644 45678899999999999999985545 448889999999


Q ss_pred             Eeccceeee--cc--CCCCCccccEEEcCCCCCCCC-Chh-hhcCCCCcEEEcCCCcCC
Q 039528           84 VLSSTILVK--TE--NFLPTFQLKELGLANCSLNVV-PTF-LLHQYDLKYLDLSHNNLV  136 (136)
Q Consensus        84 ~l~~~~~~~--~~--~~~~~~~L~~l~l~~n~~~~~-~~~-~~~~~~L~~l~l~~n~l~  136 (136)
                      ++++|.+..  ..  .+..+++|++|++++|.++.+ |.. +..+++|++|++++|.++
T Consensus       109 ~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~  167 (455)
T 3v47_A          109 TLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVK  167 (455)
T ss_dssp             ECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBS
T ss_pred             eCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCccc
Confidence            999998764  22  367788999999999999655 544 889999999999999763

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=99.77  E-value=9.7e-18  Score=118.68  Aligned_cols=130  Identities=24%  Similarity=0.237  Sum_probs=94.5

Q ss_pred             CcccEEEcCCCcccccCcccccCCCcccEEEccCCccccccchhhhccCCCCEEEccCCcCcCCCChHhhhcCccceEEE
Q 039528            5 KNLFELNLKGNNVEGHLPNCLKYLSHLKVFDISQNQLSGSLSSTITSLTSLEYLDLSYNNFEGPCPLSLLAHHSKLEVLV   84 (136)
Q Consensus         5 ~~L~~l~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~~l~~l~   84 (136)
                      +++++|++++|.+++..+..|..+++|++|++++|.+++..|..+..+++|++|++++|.++ .++...+..+++|++++
T Consensus        25 ~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~l~~~~~~~l~~L~~L~  103 (680)
T 1ziw_A           25 TNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELS-QLSDKTFAFCTNLTELH  103 (680)
T ss_dssp             TTCSEEECCSSCCCCCCGGGGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSCCC-CCCTTTTTTCTTCSEEE
T ss_pred             CCCcEEECCCCCCCCcCHHHHhCCCcCcEEECCCCccCccCHHHHhcccCcCEEECCCCccC-ccChhhhccCCCCCEEE
Confidence            45778888888887666667778888888888888877777777778888888888888776 45544577778888888


Q ss_pred             eccceeeecc--CCCCCccccEEEcCCCCCC-CCChhhhcCCCCcEEEcCCCcC
Q 039528           85 LSSTILVKTE--NFLPTFQLKELGLANCSLN-VVPTFLLHQYDLKYLDLSHNNL  135 (136)
Q Consensus        85 l~~~~~~~~~--~~~~~~~L~~l~l~~n~~~-~~~~~~~~~~~L~~l~l~~n~l  135 (136)
                      +++|.+...+  .+..+++|++|++++|.++ ..+..++.+++|++|++++|.+
T Consensus       104 L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l  157 (680)
T 1ziw_A          104 LMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKI  157 (680)
T ss_dssp             CCSSCCCCCCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSCC
T ss_pred             CCCCccCccChhHccccCCCCEEECCCCcccccCchhhcccccCCEEEccCCcc
Confidence            8887665543  4566667778888777773 3445666777777777777655

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=99.77  E-value=7e-18  Score=108.87  Aligned_cols=126  Identities=27%  Similarity=0.318  Sum_probs=110.2

Q ss_pred             CCCCcccEEEcCCCcccccCcccccCCCcccEEEccCCccccccchhhhccCCCCEEEccCCcCcCCCChHhhhcCccce
Q 039528            2 CELKNLFELNLKGNNVEGHLPNCLKYLSHLKVFDISQNQLSGSLSSTITSLTSLEYLDLSYNNFEGPCPLSLLAHHSKLE   81 (136)
Q Consensus         2 ~~l~~L~~l~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~~l~   81 (136)
                      ..+++|++|++++|.+++ + +.+..+++|++|++++|.+++.  ..+..+++|++|++++|.+++ +  ..+..+++|+
T Consensus        87 ~~l~~L~~L~l~~n~l~~-~-~~l~~l~~L~~L~L~~n~i~~~--~~l~~l~~L~~L~l~~n~l~~-~--~~l~~l~~L~  159 (291)
T 1h6t_A           87 ANLKNLGWLFLDENKVKD-L-SSLKDLKKLKSLSLEHNGISDI--NGLVHLPQLESLYLGNNKITD-I--TVLSRLTKLD  159 (291)
T ss_dssp             TTCTTCCEEECCSSCCCC-G-GGGTTCTTCCEEECTTSCCCCC--GGGGGCTTCCEEECCSSCCCC-C--GGGGGCTTCS
T ss_pred             ccCCCCCEEECCCCcCCC-C-hhhccCCCCCEEECCCCcCCCC--hhhcCCCCCCEEEccCCcCCc-c--hhhccCCCCC
Confidence            568899999999999985 3 3488999999999999999854  568889999999999999984 3  3488899999


Q ss_pred             EEEeccceeeeccCCCCCccccEEEcCCCCCCCCChhhhcCCCCcEEEcCCCcC
Q 039528           82 VLVLSSTILVKTENFLPTFQLKELGLANCSLNVVPTFLLHQYDLKYLDLSHNNL  135 (136)
Q Consensus        82 ~l~l~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~L~~l~l~~n~l  135 (136)
                      ++++++|.+...+.+..+++|+.|++++|.++.++. +..+++|+.|++++|.+
T Consensus       160 ~L~L~~N~l~~~~~l~~l~~L~~L~L~~N~i~~l~~-l~~l~~L~~L~l~~n~i  212 (291)
T 1h6t_A          160 TLSLEDNQISDIVPLAGLTKLQNLYLSKNHISDLRA-LAGLKNLDVLELFSQEC  212 (291)
T ss_dssp             EEECCSSCCCCCGGGTTCTTCCEEECCSSCCCBCGG-GTTCTTCSEEEEEEEEE
T ss_pred             EEEccCCccccchhhcCCCccCEEECCCCcCCCChh-hccCCCCCEEECcCCcc
Confidence            999999998877667888899999999999988864 88999999999999875

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=99.76  E-value=3.5e-18  Score=118.24  Aligned_cols=130  Identities=22%  Similarity=0.185  Sum_probs=93.9

Q ss_pred             CcccEEEcCCCcccccCcccccCCCcccEEEccCCccccccchhhhccCCCCEEEccCCcCcCCCChHhhhcCccceEEE
Q 039528            5 KNLFELNLKGNNVEGHLPNCLKYLSHLKVFDISQNQLSGSLSSTITSLTSLEYLDLSYNNFEGPCPLSLLAHHSKLEVLV   84 (136)
Q Consensus         5 ~~L~~l~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~~l~~l~   84 (136)
                      +++++|++++|.+++..|..+..+++|++|++++|.+++..+..+..+++|++|++++|.+.+ .+...+..+++|++++
T Consensus        26 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~-~~~~~~~~l~~L~~L~  104 (549)
T 2z81_A           26 AAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSS-LSSSWFGPLSSLKYLN  104 (549)
T ss_dssp             TTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCS-CCHHHHTTCTTCCEEE
T ss_pred             CCccEEECcCCccCccChhhhhcCCcccEEECCCCCcCccChhhccccccCCEEECCCCccCc-cCHHHhccCCCCcEEE
Confidence            467888888888877667777788888888888888776666777778888888888888774 4444577778888888


Q ss_pred             eccceeeec---cCCCCCccccEEEcCCCC-CCCCC-hhhhcCCCCcEEEcCCCcC
Q 039528           85 LSSTILVKT---ENFLPTFQLKELGLANCS-LNVVP-TFLLHQYDLKYLDLSHNNL  135 (136)
Q Consensus        85 l~~~~~~~~---~~~~~~~~L~~l~l~~n~-~~~~~-~~~~~~~~L~~l~l~~n~l  135 (136)
                      +++|.+...   ..+..+++|++|++++|. ++.+| ..+..+++|++|++++|.+
T Consensus       105 Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l  160 (549)
T 2z81_A          105 LMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSL  160 (549)
T ss_dssp             CTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTC
T ss_pred             CCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCcc
Confidence            888766532   245666677777777777 46665 3667777777777776655

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=99.76  E-value=5.7e-18  Score=113.06  Aligned_cols=132  Identities=20%  Similarity=0.249  Sum_probs=114.3

Q ss_pred             CCcccEEEcCCCcccccCcccccCCCcccEEEccCCccccccchhhhccCCCCEEEccCCcCcCCCChHhhhcCccceEE
Q 039528            4 LKNLFELNLKGNNVEGHLPNCLKYLSHLKVFDISQNQLSGSLSSTITSLTSLEYLDLSYNNFEGPCPLSLLAHHSKLEVL   83 (136)
Q Consensus         4 l~~L~~l~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~~l~~l   83 (136)
                      +++++.++++++.+....+..+..+++|++|++++|.+++..+..+..+++|++|++++|.+.+..+ ..+..+++|+++
T Consensus        44 l~~l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~L  122 (390)
T 3o6n_A           44 LNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPP-HVFQNVPLLTVL  122 (390)
T ss_dssp             GCCCSEEEEESCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCT-TTTTTCTTCCEE
T ss_pred             cCCceEEEecCCchhhCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCH-HHhcCCCCCCEE
Confidence            5788999999999996655668899999999999999987777789999999999999999985444 558899999999


Q ss_pred             EeccceeeeccC--CCCCccccEEEcCCCCCCCCC-hhhhcCCCCcEEEcCCCcCC
Q 039528           84 VLSSTILVKTEN--FLPTFQLKELGLANCSLNVVP-TFLLHQYDLKYLDLSHNNLV  136 (136)
Q Consensus        84 ~l~~~~~~~~~~--~~~~~~L~~l~l~~n~~~~~~-~~~~~~~~L~~l~l~~n~l~  136 (136)
                      ++++|.+...+.  +..+++|++|++++|.++.++ ..+..+++|++|++++|.++
T Consensus       123 ~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~  178 (390)
T 3o6n_A          123 VLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLT  178 (390)
T ss_dssp             ECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCS
T ss_pred             ECCCCccCcCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCC
Confidence            999998877763  567889999999999996665 57889999999999999864

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=99.76  E-value=2.4e-17  Score=100.55  Aligned_cols=123  Identities=20%  Similarity=0.247  Sum_probs=104.1

Q ss_pred             cEEEcCCCcccccCcccccCCCcccEEEccCCccccccchhhhccCCCCEEEccCCcCcCCCChHhhhcCccceEEEecc
Q 039528            8 FELNLKGNNVEGHLPNCLKYLSHLKVFDISQNQLSGSLSSTITSLTSLEYLDLSYNNFEGPCPLSLLAHHSKLEVLVLSS   87 (136)
Q Consensus         8 ~~l~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~~l~~l~l~~   87 (136)
                      +.++++++.++ .+|..+  .+.+++|++++|.++ .+|..+..+++|++|++++|.+++ ++...+..+++|+++++++
T Consensus        13 ~~l~~~~~~l~-~ip~~~--~~~l~~L~L~~n~i~-~ip~~~~~l~~L~~L~Ls~N~i~~-i~~~~f~~l~~L~~L~Ls~   87 (193)
T 2wfh_A           13 TVVRCSNKGLK-VLPKGI--PRDVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRIST-LSNQSFSNMTQLLTLILSY   87 (193)
T ss_dssp             TEEECTTSCCS-SCCSCC--CTTCCEEECCSSCCC-SCCGGGGGCTTCCEEECCSSCCCC-CCTTTTTTCTTCCEEECCS
T ss_pred             CEEEcCCCCCC-cCCCCC--CCCCCEEECCCCcCc-hhHHHhhcccCCCEEECCCCcCCE-eCHhHccCCCCCCEEECCC
Confidence            67889999988 566544  358999999999998 667889999999999999999984 4545688999999999999


Q ss_pred             ceeeecc--CCCCCccccEEEcCCCCCCCCCh-hhhcCCCCcEEEcCCCcC
Q 039528           88 TILVKTE--NFLPTFQLKELGLANCSLNVVPT-FLLHQYDLKYLDLSHNNL  135 (136)
Q Consensus        88 ~~~~~~~--~~~~~~~L~~l~l~~n~~~~~~~-~~~~~~~L~~l~l~~n~l  135 (136)
                      |.+...+  ++..+++|+.|++++|.++.+|. .+..+++|+.+++++|++
T Consensus        88 N~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~  138 (193)
T 2wfh_A           88 NRLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPL  138 (193)
T ss_dssp             SCCCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCE
T ss_pred             CccCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCCe
Confidence            9887665  46778899999999999988776 688899999999999976

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=99.76  E-value=9.6e-18  Score=117.31  Aligned_cols=132  Identities=22%  Similarity=0.205  Sum_probs=90.0

Q ss_pred             CCCCcccEEEcCCCcccccCcccccCCCcccEEEccCCccccccchhhhccCCCCEEEccCCcCcCCCChHhhhcCccce
Q 039528            2 CELKNLFELNLKGNNVEGHLPNCLKYLSHLKVFDISQNQLSGSLSSTITSLTSLEYLDLSYNNFEGPCPLSLLAHHSKLE   81 (136)
Q Consensus         2 ~~l~~L~~l~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~~l~   81 (136)
                      ..+++|++|++++|.++ .+|..+..+++|++|++++|.+.+..+..+..+++|++|++++|.+.+..+...+..+++|+
T Consensus       275 ~~l~~L~~L~l~~n~l~-~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~  353 (606)
T 3t6q_A          275 HCFSGLQELDLTATHLS-ELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLR  353 (606)
T ss_dssp             TTCTTCSEEECTTSCCS-CCCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECCSCSSCCBCCSSTTTTCTTCC
T ss_pred             ccccCCCEEeccCCccC-CCChhhcccccCCEEECccCCcCcCchhhhhccCcCCEEECCCCCcccccchhhhhccCcCC
Confidence            45677888888888887 67777778888888888888887666677777788888888877776555555566677777


Q ss_pred             EEEeccceeeecc----CCCCCccccEEEcCCCCCC-CCChhhhcCCCCcEEEcCCCc
Q 039528           82 VLVLSSTILVKTE----NFLPTFQLKELGLANCSLN-VVPTFLLHQYDLKYLDLSHNN  134 (136)
Q Consensus        82 ~l~l~~~~~~~~~----~~~~~~~L~~l~l~~n~~~-~~~~~~~~~~~L~~l~l~~n~  134 (136)
                      ++++++|.+....    .+..+++|++|++++|.+. ..|..+..+++|+.|++++|.
T Consensus       354 ~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~  411 (606)
T 3t6q_A          354 ELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTR  411 (606)
T ss_dssp             EEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCC
T ss_pred             EEECCCCccccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCc
Confidence            7777776654432    3455556666666666663 334455555666666665554

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=99.76  E-value=4.2e-18  Score=117.86  Aligned_cols=132  Identities=27%  Similarity=0.303  Sum_probs=103.4

Q ss_pred             CCCCCcccEEEcCCCcccccCcccccCCCcccEEEccCCccccccchhhhccCCCCEEEccCCcCcCC-CChHhhhcCcc
Q 039528            1 LCELKNLFELNLKGNNVEGHLPNCLKYLSHLKVFDISQNQLSGSLSSTITSLTSLEYLDLSYNNFEGP-CPLSLLAHHSK   79 (136)
Q Consensus         1 ~~~l~~L~~l~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~-~~~~~~~~~~~   79 (136)
                      |.++++|++|++++|.+++..|..|..+++|++|++++|.+++..+..+..+++|++|++++|.+.+. .+ ..+..+++
T Consensus        46 ~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~-~~~~~l~~  124 (549)
T 2z81_A           46 LRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVT-SLFPNLTN  124 (549)
T ss_dssp             TSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCSCCHHHHTTCTTCCEEECTTCCCSSSCSS-CSCTTCTT
T ss_pred             hhcCCcccEEECCCCCcCccChhhccccccCCEEECCCCccCccCHHHhccCCCCcEEECCCCcccccchh-hhhhccCC
Confidence            35688999999999999988888899999999999999999877777799999999999999999742 23 34778899


Q ss_pred             ceEEEeccce-eeecc--CCCCCccccEEEcCCCCCC-CCChhhhcCCCCcEEEcCCC
Q 039528           80 LEVLVLSSTI-LVKTE--NFLPTFQLKELGLANCSLN-VVPTFLLHQYDLKYLDLSHN  133 (136)
Q Consensus        80 l~~l~l~~~~-~~~~~--~~~~~~~L~~l~l~~n~~~-~~~~~~~~~~~L~~l~l~~n  133 (136)
                      |+++++++|. +...+  .+..+++|++|++++|.++ ..|..++.+++|+.|+++.|
T Consensus       125 L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n  182 (549)
T 2z81_A          125 LQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLS  182 (549)
T ss_dssp             CCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECS
T ss_pred             ccEEECCCCccccccCHhhhhcccccCeeeccCCcccccChhhhhccccCceEecccC
Confidence            9999999986 44443  5677778999999988884 45555555444444444433

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=99.75  E-value=2.7e-17  Score=102.24  Aligned_cols=125  Identities=21%  Similarity=0.285  Sum_probs=106.3

Q ss_pred             cEEEcCCCcccccCcccccCCCcccEEEccCCccccccchhhhccCCCCEEEccCCcCcCCCChHhhhcCccceEEEecc
Q 039528            8 FELNLKGNNVEGHLPNCLKYLSHLKVFDISQNQLSGSLSSTITSLTSLEYLDLSYNNFEGPCPLSLLAHHSKLEVLVLSS   87 (136)
Q Consensus         8 ~~l~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~~l~~l~l~~   87 (136)
                      +.++.+++.++ .+|..+.  +.++.|++++|.+++..+..+..+++|++|++++|.+++..+ ..+..+++|+++++++
T Consensus        14 ~~v~c~~~~l~-~iP~~l~--~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~-~~~~~l~~L~~L~Ls~   89 (220)
T 2v9t_B           14 NIVDCRGKGLT-EIPTNLP--ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAP-DAFQGLRSLNSLVLYG   89 (220)
T ss_dssp             TEEECTTSCCS-SCCSSCC--TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECT-TTTTTCSSCCEEECCS
T ss_pred             CEEEcCCCCcC-cCCCccC--cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCH-HHhhCCcCCCEEECCC
Confidence            57888899888 5665443  689999999999997777789999999999999999985444 4588999999999999


Q ss_pred             ceeeeccC--CCCCccccEEEcCCCCCCCC-ChhhhcCCCCcEEEcCCCcCC
Q 039528           88 TILVKTEN--FLPTFQLKELGLANCSLNVV-PTFLLHQYDLKYLDLSHNNLV  136 (136)
Q Consensus        88 ~~~~~~~~--~~~~~~L~~l~l~~n~~~~~-~~~~~~~~~L~~l~l~~n~l~  136 (136)
                      |.+...+.  +..+++|+.|++++|.++.+ +..+..+++|+.|++++|.++
T Consensus        90 N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~  141 (220)
T 2v9t_B           90 NKITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQ  141 (220)
T ss_dssp             SCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCS
T ss_pred             CcCCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCC
Confidence            99877653  56788999999999999665 568899999999999999874

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=99.75  E-value=4.6e-18  Score=108.29  Aligned_cols=125  Identities=25%  Similarity=0.282  Sum_probs=106.9

Q ss_pred             CCCCcccEEEcCCCcccccCcccccCCCcccEEEccCCccccccchhhhccCCCCEEEccCCcCcCCCChHhhhcCccce
Q 039528            2 CELKNLFELNLKGNNVEGHLPNCLKYLSHLKVFDISQNQLSGSLSSTITSLTSLEYLDLSYNNFEGPCPLSLLAHHSKLE   81 (136)
Q Consensus         2 ~~l~~L~~l~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~~l~   81 (136)
                      ..+++|+.|++++|.+++..+  +..+++|++|++++|.+++. +. +.. ++|++|++++|++++ ++  .+..+++|+
T Consensus        60 ~~l~~L~~L~L~~N~i~~~~~--l~~l~~L~~L~L~~N~l~~l-~~-~~~-~~L~~L~L~~N~l~~-~~--~l~~l~~L~  131 (263)
T 1xeu_A           60 QFFTNLKELHLSHNQISDLSP--LKDLTKLEELSVNRNRLKNL-NG-IPS-ACLSRLFLDNNELRD-TD--SLIHLKNLE  131 (263)
T ss_dssp             GGCTTCCEEECCSSCCCCCGG--GTTCSSCCEEECCSSCCSCC-TT-CCC-SSCCEEECCSSCCSB-SG--GGTTCTTCC
T ss_pred             hhCCCCCEEECCCCccCCChh--hccCCCCCEEECCCCccCCc-Cc-ccc-CcccEEEccCCccCC-Ch--hhcCccccc
Confidence            357889999999999996444  89999999999999999853 33 223 899999999999984 43  388899999


Q ss_pred             EEEeccceeeeccCCCCCccccEEEcCCCCCCCCChhhhcCCCCcEEEcCCCcC
Q 039528           82 VLVLSSTILVKTENFLPTFQLKELGLANCSLNVVPTFLLHQYDLKYLDLSHNNL  135 (136)
Q Consensus        82 ~l~l~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~L~~l~l~~n~l  135 (136)
                      .+++++|.+...+.+..+++|+.|++++|.++.+ ..+..+++|+.|++++|.+
T Consensus       132 ~L~Ls~N~i~~~~~l~~l~~L~~L~L~~N~i~~~-~~l~~l~~L~~L~l~~N~~  184 (263)
T 1xeu_A          132 ILSIRNNKLKSIVMLGFLSKLEVLDLHGNEITNT-GGLTRLKKVNWIDLTGQKC  184 (263)
T ss_dssp             EEECTTSCCCBCGGGGGCTTCCEEECTTSCCCBC-TTSTTCCCCCEEEEEEEEE
T ss_pred             EEECCCCcCCCChHHccCCCCCEEECCCCcCcch-HHhccCCCCCEEeCCCCcc
Confidence            9999999998887777888999999999999777 6788999999999998875

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=99.75  E-value=3.2e-17  Score=107.25  Aligned_cols=36  Identities=31%  Similarity=0.289  Sum_probs=22.8

Q ss_pred             ccccEEEcCCCCCCCC-ChhhhcCCCCcEEEcCCCcC
Q 039528          100 FQLKELGLANCSLNVV-PTFLLHQYDLKYLDLSHNNL  135 (136)
Q Consensus       100 ~~L~~l~l~~n~~~~~-~~~~~~~~~L~~l~l~~n~l  135 (136)
                      ++|+.|++++|.++.+ +..+..+++|+.|++++|.+
T Consensus       192 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l  228 (330)
T 1xku_A          192 PSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSI  228 (330)
T ss_dssp             TTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCC
T ss_pred             ccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcC
Confidence            3556666666666443 45666777777777777765

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=99.75  E-value=3.1e-18  Score=105.47  Aligned_cols=110  Identities=25%  Similarity=0.283  Sum_probs=94.5

Q ss_pred             CCCCcccEEEcCCCcccccCcccccCCCcccEEEccCCccccccchhhhccCCCCEEEccCCcCcCCCChHhhhcCccce
Q 039528            2 CELKNLFELNLKGNNVEGHLPNCLKYLSHLKVFDISQNQLSGSLSSTITSLTSLEYLDLSYNNFEGPCPLSLLAHHSKLE   81 (136)
Q Consensus         2 ~~l~~L~~l~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~~l~   81 (136)
                      ..+++|++|++++|.+++..+..+..+++|++|++++|.+++..+..+..+++|++|++++|.+.+ ++...+..+++|+
T Consensus        49 ~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~-~~~~~~~~l~~L~  127 (208)
T 2o6s_A           49 DELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELALNTNQLQS-LPDGVFDKLTQLK  127 (208)
T ss_dssp             TTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCC-CCTTTTTTCTTCC
T ss_pred             cccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCcCCccCHhHhcCccCCCEEEcCCCcCcc-cCHhHhccCCcCC
Confidence            468899999999999997666678899999999999999986666678899999999999999984 5545578899999


Q ss_pred             EEEeccceeeecc--CCCCCccccEEEcCCCCC
Q 039528           82 VLVLSSTILVKTE--NFLPTFQLKELGLANCSL  112 (136)
Q Consensus        82 ~l~l~~~~~~~~~--~~~~~~~L~~l~l~~n~~  112 (136)
                      ++++++|.+...+  .+..+++|+.|++++|.+
T Consensus       128 ~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~  160 (208)
T 2o6s_A          128 DLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPW  160 (208)
T ss_dssp             EEECCSSCCSCCCTTTTTTCTTCCEEECCSCCB
T ss_pred             EEECCCCccceeCHHHhccCCCccEEEecCCCe
Confidence            9999999887665  356778999999999987

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=99.75  E-value=8.8e-18  Score=117.59  Aligned_cols=134  Identities=20%  Similarity=0.200  Sum_probs=109.1

Q ss_pred             CCCCCcccEEEcCCCcccccCcccccCCCcccEEEccCCccccccchhhhccCCCCEEEccCCcCcCCCChHhhhcCccc
Q 039528            1 LCELKNLFELNLKGNNVEGHLPNCLKYLSHLKVFDISQNQLSGSLSSTITSLTSLEYLDLSYNNFEGPCPLSLLAHHSKL   80 (136)
Q Consensus         1 ~~~l~~L~~l~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~~l   80 (136)
                      |.++++|++|++++|.+++..+.+|.++++|++|++++|.+++..++.|..+++|++|++++|+++ .++...++.+++|
T Consensus        72 f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~~f~~L~~L~~L~Ls~N~l~-~l~~~~~~~L~~L  150 (635)
T 4g8a_A           72 FFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLA-SLENFPIGHLKTL  150 (635)
T ss_dssp             TTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECGGGGTTCTTCCEEECTTSCCC-CSTTCCCTTCTTC
T ss_pred             HhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCCCCCHHHhcCCCCCCEEECCCCcCC-CCChhhhhcCccc
Confidence            467899999999999999877888999999999999999998777778999999999999999998 4554558899999


Q ss_pred             eEEEeccceeeecc---CCCCCccccEEEcCCCCCCCCC-hhhhcCCC----CcEEEcCCCcC
Q 039528           81 EVLVLSSTILVKTE---NFLPTFQLKELGLANCSLNVVP-TFLLHQYD----LKYLDLSHNNL  135 (136)
Q Consensus        81 ~~l~l~~~~~~~~~---~~~~~~~L~~l~l~~n~~~~~~-~~~~~~~~----L~~l~l~~n~l  135 (136)
                      +++++++|.+....   .+..++.|++|++++|.++.++ ..+..+.+    ...++++.|.+
T Consensus       151 ~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~L~~l~~~~~~~~ls~n~l  213 (635)
T 4g8a_A          151 KELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPM  213 (635)
T ss_dssp             CEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCCEEECTTCCC
T ss_pred             CeeccccCccccCCCchhhccchhhhhhcccCccccccccccccchhhhhhhhhhhhcccCcc
Confidence            99999999875432   3466779999999999996554 44544333    33667776654

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.75  E-value=1.5e-17  Score=116.43  Aligned_cols=132  Identities=20%  Similarity=0.251  Sum_probs=114.7

Q ss_pred             CCcccEEEcCCCcccccCcccccCCCcccEEEccCCccccccchhhhccCCCCEEEccCCcCcCCCChHhhhcCccceEE
Q 039528            4 LKNLFELNLKGNNVEGHLPNCLKYLSHLKVFDISQNQLSGSLSSTITSLTSLEYLDLSYNNFEGPCPLSLLAHHSKLEVL   83 (136)
Q Consensus         4 l~~L~~l~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~~l~~l   83 (136)
                      +.+++.++++++.+....+..+..+++|++|++++|.+++..+..+..+++|++|++++|.+.+. +...+..+++|++|
T Consensus        50 l~~l~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~-~~~~~~~l~~L~~L  128 (597)
T 3oja_B           50 LNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYL-PPHVFQNVPLLTVL  128 (597)
T ss_dssp             GCCCSEEEESSCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCC-CTTTTTTCTTCCEE
T ss_pred             CCCceEEEeeCCCCCCcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCC-CHHHHcCCCCCCEE
Confidence            46789999999999976667788999999999999999987788999999999999999999854 44557899999999


Q ss_pred             EeccceeeeccC--CCCCccccEEEcCCCCCCCCC-hhhhcCCCCcEEEcCCCcCC
Q 039528           84 VLSSTILVKTEN--FLPTFQLKELGLANCSLNVVP-TFLLHQYDLKYLDLSHNNLV  136 (136)
Q Consensus        84 ~l~~~~~~~~~~--~~~~~~L~~l~l~~n~~~~~~-~~~~~~~~L~~l~l~~n~l~  136 (136)
                      ++++|.+...+.  +..+++|++|++++|.++.++ ..++.+++|+.|++++|.++
T Consensus       129 ~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~  184 (597)
T 3oja_B          129 VLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLT  184 (597)
T ss_dssp             ECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCS
T ss_pred             EeeCCCCCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCC
Confidence            999998877653  577889999999999996555 57899999999999999864

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=99.75  E-value=1.8e-17  Score=116.09  Aligned_cols=125  Identities=26%  Similarity=0.319  Sum_probs=69.4

Q ss_pred             CCCcccEEEcCCCcccccCcccccCCCcccEEEccCCccccccchhhhccCCCCEEEccCCcCcCCCChHhhhcCccceE
Q 039528            3 ELKNLFELNLKGNNVEGHLPNCLKYLSHLKVFDISQNQLSGSLSSTITSLTSLEYLDLSYNNFEGPCPLSLLAHHSKLEV   82 (136)
Q Consensus         3 ~l~~L~~l~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~~l~~   82 (136)
                      .+++|+.|++++|.+.+..+  +..+++|+.|++++|.+.+.  ..+..+++|+.|++++|.+.+ ++  .+..+++|+.
T Consensus        63 ~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~-l~--~l~~l~~L~~  135 (605)
T 1m9s_A           63 YLPNVTKLFLNGNKLTDIKP--LTNLKNLGWLFLDENKIKDL--SSLKDLKKLKSLSLEHNGISD-IN--GLVHLPQLES  135 (605)
T ss_dssp             GCTTCCEEECTTSCCCCCGG--GGGCTTCCEEECCSSCCCCC--TTSTTCTTCCEEECTTSCCCC-CG--GGGGCTTCSE
T ss_pred             cCCCCCEEEeeCCCCCCChh--hccCCCCCEEECcCCCCCCC--hhhccCCCCCEEEecCCCCCC-Cc--cccCCCccCE
Confidence            35666777777776664332  56666666666666666532  245556666666666666552 22  2445556666


Q ss_pred             EEeccceeeeccCCCCCccccEEEcCCCCCCCCChhhhcCCCCcEEEcCCCcC
Q 039528           83 LVLSSTILVKTENFLPTFQLKELGLANCSLNVVPTFLLHQYDLKYLDLSHNNL  135 (136)
Q Consensus        83 l~l~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~L~~l~l~~n~l  135 (136)
                      |++++|.+...+.+..+++|+.|++++|.++.++. +..+++|+.|++++|.+
T Consensus       136 L~Ls~N~l~~l~~l~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N~i  187 (605)
T 1m9s_A          136 LYLGNNKITDITVLSRLTKLDTLSLEDNQISDIVP-LAGLTKLQNLYLSKNHI  187 (605)
T ss_dssp             EECCSSCCCCCGGGGSCTTCSEEECCSSCCCCCGG-GTTCTTCCEEECCSSCC
T ss_pred             EECCCCccCCchhhcccCCCCEEECcCCcCCCchh-hccCCCCCEEECcCCCC
Confidence            66666555544444445555555555555544433 45555555555555544

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=99.75  E-value=6.5e-17  Score=97.28  Aligned_cols=126  Identities=25%  Similarity=0.294  Sum_probs=100.6

Q ss_pred             ccEEEcCCCcccccCcccccCCCcccEEEccCCccccccchhhhccCCCCEEEccCCcCcCCCChHhhhcCccceEEEec
Q 039528            7 LFELNLKGNNVEGHLPNCLKYLSHLKVFDISQNQLSGSLSSTITSLTSLEYLDLSYNNFEGPCPLSLLAHHSKLEVLVLS   86 (136)
Q Consensus         7 L~~l~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~~l~~l~l~   86 (136)
                      .+.++++++.++ .+|..+  .+++++|++++|.+++..+..+..+++|++|++++|.++ .++...+..+++|+.++++
T Consensus         9 ~~~l~~~~~~l~-~~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~l~   84 (177)
T 2o6r_A            9 GTEIRCNSKGLT-SVPTGI--PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQ-SLPDGVFDKLTKLTILYLH   84 (177)
T ss_dssp             TTEEECCSSCCS-SCCTTC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCC-CCCTTTTTTCTTCCEEECC
T ss_pred             CCEEEecCCCCc-cCCCCC--CCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcce-EeChhHccCCCccCEEECC
Confidence            567888888887 455433  368999999999988666667788999999999999997 4554557788999999999


Q ss_pred             cceeeeccC--CCCCccccEEEcCCCCCCCCCh-hhhcCCCCcEEEcCCCcCC
Q 039528           87 STILVKTEN--FLPTFQLKELGLANCSLNVVPT-FLLHQYDLKYLDLSHNNLV  136 (136)
Q Consensus        87 ~~~~~~~~~--~~~~~~L~~l~l~~n~~~~~~~-~~~~~~~L~~l~l~~n~l~  136 (136)
                      +|.+...+.  +..+++|++|++++|.++.+|. .+..+++|+++++++|+++
T Consensus        85 ~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~  137 (177)
T 2o6r_A           85 ENKLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWD  137 (177)
T ss_dssp             SSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred             CCCccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCee
Confidence            988876653  4667799999999999977776 4577899999999999864

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=99.75  E-value=8.9e-18  Score=115.68  Aligned_cols=133  Identities=24%  Similarity=0.206  Sum_probs=112.2

Q ss_pred             CCCCCcccEEEcCCCcccc--cCcccccCCCcccEEEccCCccccccch-hhhccCCCCEEEccCCcCcCCCChHhhhcC
Q 039528            1 LCELKNLFELNLKGNNVEG--HLPNCLKYLSHLKVFDISQNQLSGSLSS-TITSLTSLEYLDLSYNNFEGPCPLSLLAHH   77 (136)
Q Consensus         1 ~~~l~~L~~l~l~~~~l~~--~~~~~~~~l~~L~~L~l~~~~~~~~~~~-~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~   77 (136)
                      +..+++|++|++++|.+++  ..|..+..+++|++|++++|.+++.+|. .+..+++|++|++++|.+++..+.. +  .
T Consensus       344 ~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~-l--~  420 (520)
T 2z7x_B          344 CGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRC-L--P  420 (520)
T ss_dssp             CCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGCSCCCCTTCCEEECCSSCCCGGGGGS-C--C
T ss_pred             hccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCcccccchhccCccCCEEECcCCCCCcchhhh-h--c
Confidence            3568899999999999996  4567789999999999999999874555 4778899999999999997554432 2  2


Q ss_pred             ccceEEEeccceeeeccC-CCCCccccEEEcCCCCCCCCChh-hhcCCCCcEEEcCCCcCC
Q 039528           78 SKLEVLVLSSTILVKTEN-FLPTFQLKELGLANCSLNVVPTF-LLHQYDLKYLDLSHNNLV  136 (136)
Q Consensus        78 ~~l~~l~l~~~~~~~~~~-~~~~~~L~~l~l~~n~~~~~~~~-~~~~~~L~~l~l~~n~l~  136 (136)
                      ++|+.+++++|.+...+. +..+++|++|++++|.++.+|.. +..+++|+.+++++|+++
T Consensus       421 ~~L~~L~Ls~N~l~~ip~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~l~~N~~~  481 (520)
T 2z7x_B          421 PRIKVLDLHSNKIKSIPKQVVKLEALQELNVASNQLKSVPDGIFDRLTSLQKIWLHTNPWD  481 (520)
T ss_dssp             TTCCEEECCSSCCCCCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred             ccCCEEECCCCcccccchhhhcCCCCCEEECCCCcCCccCHHHhccCCcccEEECcCCCCc
Confidence            789999999998877653 45778999999999999989975 889999999999999874

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=99.75  E-value=9e-18  Score=116.56  Aligned_cols=135  Identities=21%  Similarity=0.213  Sum_probs=113.8

Q ss_pred             CCCCCcccEEEcCCCcccccCcccccCCCcccEEEccCCccccccchhhhccCCCCEEEccCCcCcCCCChHhhhcCccc
Q 039528            1 LCELKNLFELNLKGNNVEGHLPNCLKYLSHLKVFDISQNQLSGSLSSTITSLTSLEYLDLSYNNFEGPCPLSLLAHHSKL   80 (136)
Q Consensus         1 ~~~l~~L~~l~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~~l   80 (136)
                      |.++++|++|++++|.+++..+..|.++++|++|++++|.+++..+..+..+++|++|++++|.+.+ ++...+..+++|
T Consensus        48 ~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~-l~~~~~~~l~~L  126 (570)
T 2z63_A           48 FFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLAS-LENFPIGHLKTL  126 (570)
T ss_dssp             TTTCSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTSCCCC-STTCSCTTCTTC
T ss_pred             hhCCCCceEEECCCCcCCccCcccccCchhCCEEeCcCCcCCccCHhhhcCcccccccccccccccc-CCCccccccccc
Confidence            4578999999999999998778889999999999999999987777889999999999999999974 443347889999


Q ss_pred             eEEEeccceeeec---cCCCCCccccEEEcCCCCCCCCC-hhhhcCCCC----cEEEcCCCcCC
Q 039528           81 EVLVLSSTILVKT---ENFLPTFQLKELGLANCSLNVVP-TFLLHQYDL----KYLDLSHNNLV  136 (136)
Q Consensus        81 ~~l~l~~~~~~~~---~~~~~~~~L~~l~l~~n~~~~~~-~~~~~~~~L----~~l~l~~n~l~  136 (136)
                      +++++++|.+...   ..+..+++|++|++++|.++.++ ..++.+.+|    +.+++++|.++
T Consensus       127 ~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~~~~~L~l~~n~l~  190 (570)
T 2z63_A          127 KELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMN  190 (570)
T ss_dssp             CEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSCCCEECGGGGHHHHTCTTCCCEEECTTCCCC
T ss_pred             cEEecCCCccceecChhhhcccCCCCEEeCcCCccceecHHHccchhccchhhhhcccCCCCce
Confidence            9999999987652   34667789999999999996654 567777777    78999888753

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=99.74  E-value=4.9e-17  Score=115.09  Aligned_cols=61  Identities=31%  Similarity=0.370  Sum_probs=29.8

Q ss_pred             hcCccceEEEeccceeeecc--CCCCCccccEEEcCCCCCCCCCh-hhhcCCCCcEEEcCCCcC
Q 039528           75 AHHSKLEVLVLSSTILVKTE--NFLPTFQLKELGLANCSLNVVPT-FLLHQYDLKYLDLSHNNL  135 (136)
Q Consensus        75 ~~~~~l~~l~l~~~~~~~~~--~~~~~~~L~~l~l~~n~~~~~~~-~~~~~~~L~~l~l~~n~l  135 (136)
                      ..+++|+.+++++|.+...+  .+..+++|+.|++++|.++.+|. .+..+++|+.|++++|.+
T Consensus       533 ~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L~~N~l  596 (680)
T 1ziw_A          533 KGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLI  596 (680)
T ss_dssp             TTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCC
T ss_pred             cCCCCCCEEECCCCCCCCCCHHHcccccCcceeECCCCCCCcCCHhHhCCCCCCCEEECCCCcC
Confidence            33444444444444443332  23444455555555555544443 334555555555555554

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=99.73  E-value=6.9e-18  Score=109.66  Aligned_cols=129  Identities=25%  Similarity=0.214  Sum_probs=63.8

Q ss_pred             CCcccEEEcCCCcccccCcccccCCCcccEEEccCCccccc--cc--hhhhccCCCCEEEccCCcCcCCCCh---Hhhhc
Q 039528            4 LKNLFELNLKGNNVEGHLPNCLKYLSHLKVFDISQNQLSGS--LS--STITSLTSLEYLDLSYNNFEGPCPL---SLLAH   76 (136)
Q Consensus         4 l~~L~~l~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~--~~--~~~~~~~~l~~l~l~~~~~~~~~~~---~~~~~   76 (136)
                      +++|++|++++|.+.+..+..+..+++|++|++++|.+.+.  .+  ..+..+++|++|++++|+++ .++.   ..+..
T Consensus       144 ~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~l~~~~~~l~~~  222 (310)
T 4glp_A          144 KPGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGME-TPTGVCAALAAA  222 (310)
T ss_dssp             CSCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCC-CHHHHHHHHHHH
T ss_pred             ccCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCC-chHHHHHHHHhc
Confidence            56677777777777655556666677777777777665321  11  11234455555555555553 1111   12334


Q ss_pred             CccceEEEeccceeeec-c-CCCCC---ccccEEEcCCCCCCCCChhhhcCCCCcEEEcCCCcC
Q 039528           77 HSKLEVLVLSSTILVKT-E-NFLPT---FQLKELGLANCSLNVVPTFLLHQYDLKYLDLSHNNL  135 (136)
Q Consensus        77 ~~~l~~l~l~~~~~~~~-~-~~~~~---~~L~~l~l~~n~~~~~~~~~~~~~~L~~l~l~~n~l  135 (136)
                      +++|+++++++|.+... + .+..+   ++|++|++++|.++.+|..+.  ++|+.|++++|.+
T Consensus       223 l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~--~~L~~L~Ls~N~l  284 (310)
T 4glp_A          223 GVQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLEQVPKGLP--AKLRVLDLSSNRL  284 (310)
T ss_dssp             TCCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCCSCCSCCC--SCCSCEECCSCCC
T ss_pred             CCCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCCCchhhhhc--CCCCEEECCCCcC
Confidence            45555555555554333 1 12111   345555555555544444332  3444444444443

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=99.72  E-value=2.1e-17  Score=107.35  Aligned_cols=132  Identities=22%  Similarity=0.222  Sum_probs=105.1

Q ss_pred             CCCCCcccEEEcCCCccccc--C--cccccCCCcccEEEccCCccccccch----hhhccCCCCEEEccCCcCcCCCChH
Q 039528            1 LCELKNLFELNLKGNNVEGH--L--PNCLKYLSHLKVFDISQNQLSGSLSS----TITSLTSLEYLDLSYNNFEGPCPLS   72 (136)
Q Consensus         1 ~~~l~~L~~l~l~~~~l~~~--~--~~~~~~l~~L~~L~l~~~~~~~~~~~----~~~~~~~l~~l~l~~~~~~~~~~~~   72 (136)
                      |..+++|++|++++|.+.+.  .  +..+..+++|++|++++|.++. .+.    .+..+++|++|++++|++.+..|..
T Consensus       165 ~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~-l~~~~~~l~~~l~~L~~L~Ls~N~l~~~~p~~  243 (310)
T 4glp_A          165 VRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMET-PTGVCAALAAAGVQPHSLDLSHNSLRATVNPS  243 (310)
T ss_dssp             CCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCC-HHHHHHHHHHHTCCCSSEECTTSCCCCCCCSC
T ss_pred             hccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCc-hHHHHHHHHhcCCCCCEEECCCCCCCccchhh
Confidence            34688999999999997642  2  2334689999999999999973 333    2567899999999999998665543


Q ss_pred             hhhcC---ccceEEEeccceeeeccCCCCCccccEEEcCCCCCCCCChhhhcCCCCcEEEcCCCcCC
Q 039528           73 LLAHH---SKLEVLVLSSTILVKTENFLPTFQLKELGLANCSLNVVPTFLLHQYDLKYLDLSHNNLV  136 (136)
Q Consensus        73 ~~~~~---~~l~~l~l~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~L~~l~l~~n~l~  136 (136)
                       +..+   ++|+++++++|.+...+... .++|++|++++|.++.+|. +..+++|+.|++++|+++
T Consensus       244 -~~~~~~~~~L~~L~Ls~N~l~~lp~~~-~~~L~~L~Ls~N~l~~~~~-~~~l~~L~~L~L~~N~l~  307 (310)
T 4glp_A          244 -APRCMWSSALNSLNLSFAGLEQVPKGL-PAKLRVLDLSSNRLNRAPQ-PDELPEVDNLTLDGNPFL  307 (310)
T ss_dssp             -CSSCCCCTTCCCEECCSSCCCSCCSCC-CSCCSCEECCSCCCCSCCC-TTSCCCCSCEECSSTTTS
T ss_pred             -HHhccCcCcCCEEECCCCCCCchhhhh-cCCCCEEECCCCcCCCCch-hhhCCCccEEECcCCCCC
Confidence             3343   79999999999988665432 2699999999999988765 688899999999999985

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=99.72  E-value=7.6e-17  Score=106.01  Aligned_cols=36  Identities=14%  Similarity=0.156  Sum_probs=15.1

Q ss_pred             CccccEEEcCCCCCCCCChhhhcCCCCcEEEcCCCcC
Q 039528           99 TFQLKELGLANCSLNVVPTFLLHQYDLKYLDLSHNNL  135 (136)
Q Consensus        99 ~~~L~~l~l~~n~~~~~~~~~~~~~~L~~l~l~~n~l  135 (136)
                      +++|+.|++++|.++.++. +..+++|+.+++++|.+
T Consensus       310 l~~L~~L~L~~n~l~~~~~-~~~l~~L~~L~l~~N~i  345 (347)
T 4fmz_A          310 LTNLTTLFLSQNHITDIRP-LASLSKMDSADFANQVI  345 (347)
T ss_dssp             CTTCSEEECCSSSCCCCGG-GGGCTTCSEESSSCC--
T ss_pred             cccCCEEEccCCccccccC-hhhhhccceeehhhhcc
Confidence            3344444444444433332 44444444444444443

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=99.72  E-value=3.7e-17  Score=118.33  Aligned_cols=131  Identities=19%  Similarity=0.172  Sum_probs=98.5

Q ss_pred             CCcccEEEcCCCcccccCcccccCCCcccEEEccCCccccc-cchhhhccCCCCEEEccCCcCcCCCChHhhhcCccceE
Q 039528            4 LKNLFELNLKGNNVEGHLPNCLKYLSHLKVFDISQNQLSGS-LSSTITSLTSLEYLDLSYNNFEGPCPLSLLAHHSKLEV   82 (136)
Q Consensus         4 l~~L~~l~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~-~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~~l~~   82 (136)
                      .+++++|++++|.+++..+..|.++++|++|++++|...+. .|..+..+++|++|++++|.+.+..| ..+..+++|++
T Consensus        23 p~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p-~~~~~l~~L~~  101 (844)
T 3j0a_A           23 LNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHP-DAFQGLFHLFE  101 (844)
T ss_dssp             CTTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECT-TSSCSCSSCCC
T ss_pred             CCCcCEEECCCCcCCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccCH-hHccCCcccCE
Confidence            35688888888888877778888888888888888854333 36778888888888888888875444 34778888888


Q ss_pred             EEeccceeee--cc--CCCCCccccEEEcCCCCCCCC--ChhhhcCCCCcEEEcCCCcC
Q 039528           83 LVLSSTILVK--TE--NFLPTFQLKELGLANCSLNVV--PTFLLHQYDLKYLDLSHNNL  135 (136)
Q Consensus        83 l~l~~~~~~~--~~--~~~~~~~L~~l~l~~n~~~~~--~~~~~~~~~L~~l~l~~n~l  135 (136)
                      |++++|.+..  ..  .+..+++|++|++++|.++.+  +..++.+++|++|++++|.+
T Consensus       102 L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i  160 (844)
T 3j0a_A          102 LRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQI  160 (844)
T ss_dssp             EECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCC
T ss_pred             eeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcC
Confidence            8888887654  22  256777888888888888443  24678888888888888765

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=99.72  E-value=1e-16  Score=111.45  Aligned_cols=125  Identities=23%  Similarity=0.245  Sum_probs=87.2

Q ss_pred             cccEEEcCCCcccccCcccccCCCcccEEEccCCccccccchhhhccCCCCEEEccCCcCcCCCChHhhhcCccceEEEe
Q 039528            6 NLFELNLKGNNVEGHLPNCLKYLSHLKVFDISQNQLSGSLSSTITSLTSLEYLDLSYNNFEGPCPLSLLAHHSKLEVLVL   85 (136)
Q Consensus         6 ~L~~l~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~~l~~l~l   85 (136)
                      ..+.++++++.++. +|..+.  +++++|++++|.+++..+..+..+++|++|++++|.+++..+ ..+..+++|+++++
T Consensus        32 ~~~~l~ls~~~L~~-ip~~~~--~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~-~~~~~l~~L~~L~L  107 (562)
T 3a79_B           32 LESMVDYSNRNLTH-VPKDLP--PRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDF-HVFLFNQDLEYLDV  107 (562)
T ss_dssp             -CCEEECTTSCCCS-CCTTSC--TTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEECT-TTTTTCTTCCEEEC
T ss_pred             CCcEEEcCCCCCcc-CCCCCC--CCcCEEECCCCCccccChhhhccCCCccEEECCCCCCCcCCH-HHhCCCCCCCEEEC
Confidence            34677777777773 554432  677777887777776666677777778888887777764333 34667777788888


Q ss_pred             ccceeeeccCCCCCccccEEEcCCCCCCCC--ChhhhcCCCCcEEEcCCCcC
Q 039528           86 SSTILVKTENFLPTFQLKELGLANCSLNVV--PTFLLHQYDLKYLDLSHNNL  135 (136)
Q Consensus        86 ~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~--~~~~~~~~~L~~l~l~~n~l  135 (136)
                      ++|.+...+.. .+.+|++|++++|.++.+  |..++.+++|++|++++|.+
T Consensus       108 s~N~l~~lp~~-~l~~L~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~l  158 (562)
T 3a79_B          108 SHNRLQNISCC-PMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKF  158 (562)
T ss_dssp             TTSCCCEECSC-CCTTCSEEECCSSCCSBCCCCGGGGGCTTCCEEEEECSBC
T ss_pred             CCCcCCccCcc-ccccCCEEECCCCCccccCchHhhcccCcccEEecCCCcc
Confidence            77777666544 566777888877777543  36777777777777777765

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=99.72  E-value=9.6e-17  Score=112.48  Aligned_cols=126  Identities=26%  Similarity=0.307  Sum_probs=110.0

Q ss_pred             CCCCcccEEEcCCCcccccCcccccCCCcccEEEccCCccccccchhhhccCCCCEEEccCCcCcCCCChHhhhcCccce
Q 039528            2 CELKNLFELNLKGNNVEGHLPNCLKYLSHLKVFDISQNQLSGSLSSTITSLTSLEYLDLSYNNFEGPCPLSLLAHHSKLE   81 (136)
Q Consensus         2 ~~l~~L~~l~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~~l~   81 (136)
                      ..+++|+.|++++|.+.+ + +.+..+++|++|++++|.+.+.  ..+..+++|+.|++++|.+.+ +  ..+..+++|+
T Consensus        84 ~~l~~L~~L~Ls~N~l~~-l-~~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~-l--~~l~~l~~L~  156 (605)
T 1m9s_A           84 TNLKNLGWLFLDENKIKD-L-SSLKDLKKLKSLSLEHNGISDI--NGLVHLPQLESLYLGNNKITD-I--TVLSRLTKLD  156 (605)
T ss_dssp             GGCTTCCEEECCSSCCCC-C-TTSTTCTTCCEEECTTSCCCCC--GGGGGCTTCSEEECCSSCCCC-C--GGGGSCTTCS
T ss_pred             ccCCCCCEEECcCCCCCC-C-hhhccCCCCCEEEecCCCCCCC--ccccCCCccCEEECCCCccCC-c--hhhcccCCCC
Confidence            467899999999999985 3 3688999999999999999853  568899999999999999984 3  3488999999


Q ss_pred             EEEeccceeeeccCCCCCccccEEEcCCCCCCCCChhhhcCCCCcEEEcCCCcC
Q 039528           82 VLVLSSTILVKTENFLPTFQLKELGLANCSLNVVPTFLLHQYDLKYLDLSHNNL  135 (136)
Q Consensus        82 ~l~l~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~L~~l~l~~n~l  135 (136)
                      .|++++|.+.....+..+++|+.|++++|.++.++ .+..+++|+.|++++|.+
T Consensus       157 ~L~Ls~N~l~~~~~l~~l~~L~~L~Ls~N~i~~l~-~l~~l~~L~~L~L~~N~l  209 (605)
T 1m9s_A          157 TLSLEDNQISDIVPLAGLTKLQNLYLSKNHISDLR-ALAGLKNLDVLELFSQEC  209 (605)
T ss_dssp             EEECCSSCCCCCGGGTTCTTCCEEECCSSCCCBCG-GGTTCTTCSEEECCSEEE
T ss_pred             EEECcCCcCCCchhhccCCCCCEEECcCCCCCCCh-HHccCCCCCEEEccCCcC
Confidence            99999998877766788889999999999998875 688999999999999875

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=99.71  E-value=5.2e-17  Score=106.37  Aligned_cols=130  Identities=22%  Similarity=0.277  Sum_probs=63.7

Q ss_pred             cccEEEcCCCcccccCcccccCCCcccEEEccCCccccccchhhhccCCCCEEEccCCcCcC------------------
Q 039528            6 NLFELNLKGNNVEGHLPNCLKYLSHLKVFDISQNQLSGSLSSTITSLTSLEYLDLSYNNFEG------------------   67 (136)
Q Consensus         6 ~L~~l~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~------------------   67 (136)
                      +++.|++++|.+.+..+..+..+++|++|++++|.+++..|..+..+++|++|++++|.+..                  
T Consensus        55 ~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~L~~L~l~~n~  134 (332)
T 2ft3_A           55 DTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNHLVEIPPNLPSSLVELRIHDNR  134 (332)
T ss_dssp             TCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECCSSCCCSCCSSCCTTCCEEECCSSC
T ss_pred             CCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECCCCcCCccCccccccCCEEECCCCc
Confidence            34555555555554444445555555555555555544444445555555555555444431                  


Q ss_pred             --CCChHhhhcCccceEEEeccceeeec----cCCCCC--------------------ccccEEEcCCCCCCCCC-hhhh
Q 039528           68 --PCPLSLLAHHSKLEVLVLSSTILVKT----ENFLPT--------------------FQLKELGLANCSLNVVP-TFLL  120 (136)
Q Consensus        68 --~~~~~~~~~~~~l~~l~l~~~~~~~~----~~~~~~--------------------~~L~~l~l~~n~~~~~~-~~~~  120 (136)
                        ..+...+..+++|+++++++|.+...    ..+..+                    .+|++|++++|.++.++ ..+.
T Consensus       135 i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~L~~L~l~~n~l~~l~~~~~~~L~~L~l~~n~i~~~~~~~l~  214 (332)
T 2ft3_A          135 IRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGLKLNYLRISEAKLTGIPKDLPETLNELHLDHNKIQAIELEDLL  214 (332)
T ss_dssp             CCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSCCCSCCBCCSSBCSSCCSSSCSSCSCCBCCSSCCCCCCTTSST
T ss_pred             cCccCHhHhCCCccCCEEECCCCccccCCCCcccccCCccCEEECcCCCCCccCccccCCCCEEECCCCcCCccCHHHhc
Confidence              22333355566666666666555321    111111                    23444455555553333 3455


Q ss_pred             cCCCCcEEEcCCCcC
Q 039528          121 HQYDLKYLDLSHNNL  135 (136)
Q Consensus       121 ~~~~L~~l~l~~n~l  135 (136)
                      .+++|+.|++++|.+
T Consensus       215 ~l~~L~~L~L~~N~l  229 (332)
T 2ft3_A          215 RYSKLYRLGLGHNQI  229 (332)
T ss_dssp             TCTTCSCCBCCSSCC
T ss_pred             CCCCCCEEECCCCcC
Confidence            566666666666654

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=99.71  E-value=8e-17  Score=100.11  Aligned_cols=110  Identities=18%  Similarity=0.181  Sum_probs=97.5

Q ss_pred             CCCCcccEEEcCCCcccccCcccccCCCcccEEEccCCccccccchhhhccCCCCEEEccCCcCcCCCChHhhhcCccce
Q 039528            2 CELKNLFELNLKGNNVEGHLPNCLKYLSHLKVFDISQNQLSGSLSSTITSLTSLEYLDLSYNNFEGPCPLSLLAHHSKLE   81 (136)
Q Consensus         2 ~~l~~L~~l~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~~l~   81 (136)
                      ..+++|+.|++++|.+++..+..|..+++|++|++++|.+++..+..+..+++|++|++++|++++..+ ..+..+++|+
T Consensus        54 ~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~-~~~~~l~~L~  132 (220)
T 2v70_A           54 KKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLENVQHKMFKGLESLKTLMLRSNRITCVGN-DSFIGLSSVR  132 (220)
T ss_dssp             GGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCCCCGGGGTTCSSCCEEECTTSCCCCBCT-TSSTTCTTCS
T ss_pred             ccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCCccCccCHhHhcCCcCCCEEECCCCcCCeECH-hHcCCCccCC
Confidence            457899999999999998777889999999999999999998778889999999999999999985544 4588899999


Q ss_pred             EEEeccceeeecc--CCCCCccccEEEcCCCCC
Q 039528           82 VLVLSSTILVKTE--NFLPTFQLKELGLANCSL  112 (136)
Q Consensus        82 ~l~l~~~~~~~~~--~~~~~~~L~~l~l~~n~~  112 (136)
                      .+++++|.+....  .+..+++|+.|++++|.+
T Consensus       133 ~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l  165 (220)
T 2v70_A          133 LLSLYDNQITTVAPGAFDTLHSLSTLNLLANPF  165 (220)
T ss_dssp             EEECTTSCCCCBCTTTTTTCTTCCEEECCSCCE
T ss_pred             EEECCCCcCCEECHHHhcCCCCCCEEEecCcCC
Confidence            9999999887663  567788999999999998

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=99.71  E-value=3.3e-16  Score=102.98  Aligned_cols=107  Identities=21%  Similarity=0.259  Sum_probs=61.5

Q ss_pred             ccCCCcccEEEccCCccccccchhhhccCCCCEEEccCCcCcCCCChHhhhcCccceEEEeccceeeeccCCCCCccccE
Q 039528           25 LKYLSHLKVFDISQNQLSGSLSSTITSLTSLEYLDLSYNNFEGPCPLSLLAHHSKLEVLVLSSTILVKTENFLPTFQLKE  104 (136)
Q Consensus        25 ~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~L~~  104 (136)
                      +..+++|++|++++|.+++..+  +..+++|++|++++|.+.+ .+  .+..+++|+.+++++|.+...+.+..+++|+.
T Consensus       217 ~~~~~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~-~~--~~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~  291 (347)
T 4fmz_A          217 VANMTRLNSLKIGNNKITDLSP--LANLSQLTWLEIGTNQISD-IN--AVKDLTKLKMLNVGSNQISDISVLNNLSQLNS  291 (347)
T ss_dssp             GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCC-CG--GGTTCTTCCEEECCSSCCCCCGGGGGCTTCSE
T ss_pred             hhcCCcCCEEEccCCccCCCcc--hhcCCCCCEEECCCCccCC-Ch--hHhcCCCcCEEEccCCccCCChhhcCCCCCCE
Confidence            4445555555555555543222  4555566666666665542 22  25556666666666666555554555556677


Q ss_pred             EEcCCCCCCC-CChhhhcCCCCcEEEcCCCcCC
Q 039528          105 LGLANCSLNV-VPTFLLHQYDLKYLDLSHNNLV  136 (136)
Q Consensus       105 l~l~~n~~~~-~~~~~~~~~~L~~l~l~~n~l~  136 (136)
                      |++++|.++. .+..++.+++|+.|++++|.++
T Consensus       292 L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~  324 (347)
T 4fmz_A          292 LFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHIT  324 (347)
T ss_dssp             EECCSSCCCGGGHHHHHTCTTCSEEECCSSSCC
T ss_pred             EECcCCcCCCcChhHhhccccCCEEEccCCccc
Confidence            7777766643 3345666777777777777653

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=99.71  E-value=1.7e-16  Score=108.26  Aligned_cols=123  Identities=25%  Similarity=0.343  Sum_probs=56.0

Q ss_pred             CCcccEEEcCCCcccccCcccccCCCcccEEEccCCccccccchhhhccCCCCEEEccCCcCcCCCChHhhhcCccceEE
Q 039528            4 LKNLFELNLKGNNVEGHLPNCLKYLSHLKVFDISQNQLSGSLSSTITSLTSLEYLDLSYNNFEGPCPLSLLAHHSKLEVL   83 (136)
Q Consensus         4 l~~L~~l~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~~l~~l   83 (136)
                      +++|+.|++++|.+.+..+  +..+++|++|++++|.+++..+  +..+++|+.|++++|++.+ .+.  +..+++|+.+
T Consensus       242 l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~-~~~--~~~l~~L~~L  314 (466)
T 1o6v_A          242 LTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISP--LAGLTALTNLELNENQLED-ISP--ISNLKNLTYL  314 (466)
T ss_dssp             CTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCSC-CGG--GGGCTTCSEE
T ss_pred             CCCCCEEECCCCccccchh--hhcCCCCCEEECCCCccCcccc--ccCCCccCeEEcCCCcccC-chh--hcCCCCCCEE
Confidence            4556666666665553322  4555555555555555543222  4444555555555555442 111  3344444555


Q ss_pred             EeccceeeeccCCCCCccccEEEcCCCCCCCCChhhhcCCCCcEEEcCCCc
Q 039528           84 VLSSTILVKTENFLPTFQLKELGLANCSLNVVPTFLLHQYDLKYLDLSHNN  134 (136)
Q Consensus        84 ~l~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~L~~l~l~~n~  134 (136)
                      ++++|.+.....+..+++|+.|++++|.++.+ ..+..+++|+.|++++|.
T Consensus       315 ~L~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~-~~l~~l~~L~~L~l~~n~  364 (466)
T 1o6v_A          315 TLYFNNISDISPVSSLTKLQRLFFYNNKVSDV-SSLANLTNINWLSAGHNQ  364 (466)
T ss_dssp             ECCSSCCSCCGGGGGCTTCCEEECCSSCCCCC-GGGTTCTTCCEEECCSSC
T ss_pred             ECcCCcCCCchhhccCccCCEeECCCCccCCc-hhhccCCCCCEEeCCCCc
Confidence            55444443333233333444444444444333 233344444444444443

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=99.70  E-value=5.6e-17  Score=117.38  Aligned_cols=134  Identities=17%  Similarity=0.177  Sum_probs=98.7

Q ss_pred             CCCCCcccEEEcCCCcccccC-cccccCCCcccEEEccCCccccccchhhhccCCCCEEEccCCcCcCCCCh-HhhhcCc
Q 039528            1 LCELKNLFELNLKGNNVEGHL-PNCLKYLSHLKVFDISQNQLSGSLSSTITSLTSLEYLDLSYNNFEGPCPL-SLLAHHS   78 (136)
Q Consensus         1 ~~~l~~L~~l~l~~~~l~~~~-~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~-~~~~~~~   78 (136)
                      |.++++|++|++++|...+.+ |..|.++++|++|++++|.+.+..|..+..+++|++|++++|.+.+..+. ..+..++
T Consensus        44 ~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~  123 (844)
T 3j0a_A           44 FPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLK  123 (844)
T ss_dssp             CSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCS
T ss_pred             CcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccCHhHccCCcccCEeeCcCCCCCcccccCccccccC
Confidence            356788899999888554444 67788899999999999988877788888889999999999888764442 2467788


Q ss_pred             cceEEEeccceeeecc---CCCCCccccEEEcCCCCC-CCCChhhhcC--CCCcEEEcCCCc
Q 039528           79 KLEVLVLSSTILVKTE---NFLPTFQLKELGLANCSL-NVVPTFLLHQ--YDLKYLDLSHNN  134 (136)
Q Consensus        79 ~l~~l~l~~~~~~~~~---~~~~~~~L~~l~l~~n~~-~~~~~~~~~~--~~L~~l~l~~n~  134 (136)
                      +|++|++++|.+....   .+..+++|++|++++|.+ +..+..+..+  ++|+.|++++|.
T Consensus       124 ~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~l~~~~L~~L~L~~n~  185 (844)
T 3j0a_A          124 ALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAANS  185 (844)
T ss_dssp             SCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCSGGGHHHHHCSSCCCEECCSB
T ss_pred             CCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCeeCHHHcccccCCccceEECCCCc
Confidence            8999999988775542   356777888888888888 3344555444  455555555544

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=99.70  E-value=1.2e-16  Score=104.61  Aligned_cols=126  Identities=20%  Similarity=0.249  Sum_probs=105.9

Q ss_pred             CcccEEEcCCCcccccCcccccCCCcccEEEccCCccccccchhhhccCCCCEEEccCCcCcCCCChHhhhcCccceEEE
Q 039528            5 KNLFELNLKGNNVEGHLPNCLKYLSHLKVFDISQNQLSGSLSSTITSLTSLEYLDLSYNNFEGPCPLSLLAHHSKLEVLV   84 (136)
Q Consensus         5 ~~L~~l~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~~l~~l~   84 (136)
                      .+++.++++++.+. .+|..+  .+.+++|++++|.+++..+..+..+++|++|++++|.+++..+ ..+..+++|++++
T Consensus        33 c~l~~l~~~~~~l~-~ip~~~--~~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~  108 (332)
T 2ft3_A           33 CHLRVVQCSDLGLK-AVPKEI--SPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHE-KAFSPLRKLQKLY  108 (332)
T ss_dssp             EETTEEECCSSCCS-SCCSCC--CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECG-GGSTTCTTCCEEE
T ss_pred             ccCCEEECCCCCcc-ccCCCC--CCCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCH-hHhhCcCCCCEEE
Confidence            36899999999988 566655  3689999999999987777889999999999999999985444 4588999999999


Q ss_pred             eccceeeeccCCCCCccccEEEcCCCCCCCCCh-hhhcCCCCcEEEcCCCcC
Q 039528           85 LSSTILVKTENFLPTFQLKELGLANCSLNVVPT-FLLHQYDLKYLDLSHNNL  135 (136)
Q Consensus        85 l~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~-~~~~~~~L~~l~l~~n~l  135 (136)
                      +++|.+...+.... .+|++|++++|.++.++. .+..+++|+.|++++|.+
T Consensus       109 L~~n~l~~l~~~~~-~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l  159 (332)
T 2ft3_A          109 ISKNHLVEIPPNLP-SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPL  159 (332)
T ss_dssp             CCSSCCCSCCSSCC-TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCC
T ss_pred             CCCCcCCccCcccc-ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCcc
Confidence            99998876653322 689999999999977775 688899999999999876

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=99.70  E-value=2.9e-16  Score=107.04  Aligned_cols=125  Identities=23%  Similarity=0.346  Sum_probs=75.8

Q ss_pred             CCCcccEEEcCCCcccccCcccccCCCcccEEEccCCccccccchhhhccCCCCEEEccCCcCcCCCChHhhhcCccceE
Q 039528            3 ELKNLFELNLKGNNVEGHLPNCLKYLSHLKVFDISQNQLSGSLSSTITSLTSLEYLDLSYNNFEGPCPLSLLAHHSKLEV   82 (136)
Q Consensus         3 ~l~~L~~l~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~~l~~   82 (136)
                      .+++|+.|++++|.+.+..+  +..+++|+.|++++|.+++..+  +..+++|+.|++++|.+.+..+   +..+++|+.
T Consensus       263 ~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~---~~~l~~L~~  335 (466)
T 1o6v_A          263 GLTKLTELKLGANQISNISP--LAGLTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISDISP---VSSLTKLQR  335 (466)
T ss_dssp             TCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCSCCGG--GGGCTTCSEEECCSSCCSCCGG---GGGCTTCCE
T ss_pred             cCCCCCEEECCCCccCcccc--ccCCCccCeEEcCCCcccCchh--hcCCCCCCEEECcCCcCCCchh---hccCccCCE
Confidence            45666666666666664322  5566666666666666654322  5566666666666666654322   455666666


Q ss_pred             EEeccceeeeccCCCCCccccEEEcCCCCCCCCChhhhcCCCCcEEEcCCCcC
Q 039528           83 LVLSSTILVKTENFLPTFQLKELGLANCSLNVVPTFLLHQYDLKYLDLSHNNL  135 (136)
Q Consensus        83 l~l~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~L~~l~l~~n~l  135 (136)
                      +++++|.+...+.+..+++|+.|++++|.++.++. +..+++|+.|++++|.+
T Consensus       336 L~l~~n~l~~~~~l~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~l~~n~~  387 (466)
T 1o6v_A          336 LFFYNNKVSDVSSLANLTNINWLSAGHNQISDLTP-LANLTRITQLGLNDQAW  387 (466)
T ss_dssp             EECCSSCCCCCGGGTTCTTCCEEECCSSCCCBCGG-GTTCTTCCEEECCCEEE
T ss_pred             eECCCCccCCchhhccCCCCCEEeCCCCccCccch-hhcCCCCCEEeccCCcc
Confidence            66666666555555556666666666666644443 56666666666666654

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=99.69  E-value=8.1e-17  Score=114.97  Aligned_cols=114  Identities=23%  Similarity=0.213  Sum_probs=94.4

Q ss_pred             cCcccccCCCcccEEEccCCccccccchhhhccCCCCEEEccCCcCcCCCChHhhhcCccceEEEeccceeeecc-CCCC
Q 039528           20 HLPNCLKYLSHLKVFDISQNQLSGSLSSTITSLTSLEYLDLSYNNFEGPCPLSLLAHHSKLEVLVLSSTILVKTE-NFLP   98 (136)
Q Consensus        20 ~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~-~~~~   98 (136)
                      ..+..+..++.|+.|++++|.+. .+|..+..+++|++|++++|.++ .+|.. +..+++|+.|++++|.+...+ .+..
T Consensus       215 ~~~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~~l~~L~~L~Ls~N~l~-~lp~~-~~~l~~L~~L~Ls~N~l~~lp~~~~~  291 (727)
T 4b8c_D          215 MPKDSKYDDQLWHALDLSNLQIF-NISANIFKYDFLTRLYLNGNSLT-ELPAE-IKNLSNLRVLDLSHNRLTSLPAELGS  291 (727)
T ss_dssp             -------CCCCCCEEECTTSCCS-CCCGGGGGCCSCSCCBCTTSCCS-CCCGG-GGGGTTCCEEECTTSCCSSCCSSGGG
T ss_pred             cChhhhccCCCCcEEECCCCCCC-CCChhhcCCCCCCEEEeeCCcCc-ccChh-hhCCCCCCEEeCcCCcCCccChhhcC
Confidence            34667888999999999999988 67777778999999999999998 77754 788999999999999887665 4567


Q ss_pred             CccccEEEcCCCCCCCCChhhhcCCCCcEEEcCCCcCC
Q 039528           99 TFQLKELGLANCSLNVVPTFLLHQYDLKYLDLSHNNLV  136 (136)
Q Consensus        99 ~~~L~~l~l~~n~~~~~~~~~~~~~~L~~l~l~~n~l~  136 (136)
                      +.+|+.|++++|.++.+|..++.+++|+.|++++|.++
T Consensus       292 l~~L~~L~L~~N~l~~lp~~~~~l~~L~~L~L~~N~l~  329 (727)
T 4b8c_D          292 CFQLKYFYFFDNMVTTLPWEFGNLCNLQFLGVEGNPLE  329 (727)
T ss_dssp             GTTCSEEECCSSCCCCCCSSTTSCTTCCCEECTTSCCC
T ss_pred             CCCCCEEECCCCCCCccChhhhcCCCccEEeCCCCccC
Confidence            77999999999999999988999999999999999874

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=99.69  E-value=1.7e-17  Score=110.67  Aligned_cols=134  Identities=19%  Similarity=0.182  Sum_probs=83.2

Q ss_pred             CCCcccEEEcCCCcccc----cCcccccCCCcccEEEccCCccccccchhh----hcc---------CCCCEEEccCCcC
Q 039528            3 ELKNLFELNLKGNNVEG----HLPNCLKYLSHLKVFDISQNQLSGSLSSTI----TSL---------TSLEYLDLSYNNF   65 (136)
Q Consensus         3 ~l~~L~~l~l~~~~l~~----~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~----~~~---------~~l~~l~l~~~~~   65 (136)
                      .+++|++|++++|.+.+    .++..+..+++|++|++++|.++...+..+    ..+         ++|++|++++|++
T Consensus        92 ~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l  171 (386)
T 2ca6_A           92 KCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRL  171 (386)
T ss_dssp             TCTTCCEEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCC
T ss_pred             hCCcccEEECCCCcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCC
Confidence            45667777777777765    245556667777777777776653322222    223         6777777777777


Q ss_pred             c-CCCCh--HhhhcCccceEEEeccceeeec------c-CCCCCccccEEEcCCCCC-----CCCChhhhcCCCCcEEEc
Q 039528           66 E-GPCPL--SLLAHHSKLEVLVLSSTILVKT------E-NFLPTFQLKELGLANCSL-----NVVPTFLLHQYDLKYLDL  130 (136)
Q Consensus        66 ~-~~~~~--~~~~~~~~l~~l~l~~~~~~~~------~-~~~~~~~L~~l~l~~n~~-----~~~~~~~~~~~~L~~l~l  130 (136)
                      . +..+.  ..+..+++|+++++++|.+.+.      + .+..+++|+.|++++|.+     ..+|..+..+++|+.|++
T Consensus       172 ~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L  251 (386)
T 2ca6_A          172 ENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGL  251 (386)
T ss_dssp             TGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEEC
T ss_pred             CcHHHHHHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEEC
Confidence            5 22221  2345667777777777766532      1 445556777777777777     345666677777777777


Q ss_pred             CCCcCC
Q 039528          131 SHNNLV  136 (136)
Q Consensus       131 ~~n~l~  136 (136)
                      ++|.++
T Consensus       252 ~~n~i~  257 (386)
T 2ca6_A          252 NDCLLS  257 (386)
T ss_dssp             TTCCCC
T ss_pred             CCCCCc
Confidence            777653

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=99.68  E-value=1.1e-16  Score=95.42  Aligned_cols=115  Identities=25%  Similarity=0.213  Sum_probs=97.7

Q ss_pred             CCCCcccEEEcCCCcccccCcccccCCCcccEEEccCCccccccchhhhccCCCCEEEccCCcCcCCCChHhhhcCccce
Q 039528            2 CELKNLFELNLKGNNVEGHLPNCLKYLSHLKVFDISQNQLSGSLSSTITSLTSLEYLDLSYNNFEGPCPLSLLAHHSKLE   81 (136)
Q Consensus         2 ~~l~~L~~l~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~~l~   81 (136)
                      ..+++|++|++++|.+++.  ..+..+++|++|++++|.+++..|..+..+++|++|++++|.+++......+..+++|+
T Consensus        46 ~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~l~~l~~L~  123 (168)
T 2ell_A           46 AEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLNLSGNKLKDISTLEPLKKLECLK  123 (168)
T ss_dssp             GGGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEEECBSSSCCSSGGGGGGSSCSCCC
T ss_pred             HhCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEEeccCCccCcchhHHHHhcCCCCC
Confidence            4578899999999999965  77889999999999999998767888888999999999999998432224588899999


Q ss_pred             EEEeccceeeeccC-----CCCCccccEEEcCCCCCCCCChh
Q 039528           82 VLVLSSTILVKTEN-----FLPTFQLKELGLANCSLNVVPTF  118 (136)
Q Consensus        82 ~l~l~~~~~~~~~~-----~~~~~~L~~l~l~~n~~~~~~~~  118 (136)
                      ++++++|.+...+.     +..+++|+.|++++|.+.++|..
T Consensus       124 ~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~  165 (168)
T 2ell_A          124 SLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQEAPDS  165 (168)
T ss_dssp             EEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTSCBCCSS
T ss_pred             EEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCChhhcccc
Confidence            99999998876654     56788999999999999887753

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=99.68  E-value=6.3e-16  Score=94.28  Aligned_cols=106  Identities=26%  Similarity=0.368  Sum_probs=94.3

Q ss_pred             CcccEEEcCCCcccccCcccccCCCcccEEEccCCccccccchhhhccCCCCEEEccCCcCcCCCChHhhhcCccceEEE
Q 039528            5 KNLFELNLKGNNVEGHLPNCLKYLSHLKVFDISQNQLSGSLSSTITSLTSLEYLDLSYNNFEGPCPLSLLAHHSKLEVLV   84 (136)
Q Consensus         5 ~~L~~l~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~~l~~l~   84 (136)
                      +++++|++++|.++ .+|..+..+++|++|++++|.+++..+..|..+++|++|++++|++++ ++...+..+++|+.++
T Consensus        31 ~~l~~L~L~~n~i~-~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~l~~-i~~~~f~~l~~L~~L~  108 (193)
T 2wfh_A           31 RDVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRC-IPPRTFDGLKSLRLLS  108 (193)
T ss_dssp             TTCCEEECCSSCCC-SCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCB-CCTTTTTTCTTCCEEE
T ss_pred             CCCCEEECCCCcCc-hhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCccCE-eCHHHhCCCCCCCEEE
Confidence            46899999999998 677899999999999999999998777889999999999999999984 4445688999999999


Q ss_pred             eccceeeecc--CCCCCccccEEEcCCCCC
Q 039528           85 LSSTILVKTE--NFLPTFQLKELGLANCSL  112 (136)
Q Consensus        85 l~~~~~~~~~--~~~~~~~L~~l~l~~n~~  112 (136)
                      +++|.+...+  .+..+++|+.+++++|.+
T Consensus       109 L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~  138 (193)
T 2wfh_A          109 LHGNDISVVPEGAFNDLSALSHLAIGANPL  138 (193)
T ss_dssp             CCSSCCCBCCTTTTTTCTTCCEEECCSSCE
T ss_pred             CCCCCCCeeChhhhhcCccccEEEeCCCCe
Confidence            9999887765  466788999999999988

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=99.66  E-value=6.2e-19  Score=107.96  Aligned_cols=126  Identities=21%  Similarity=0.219  Sum_probs=71.4

Q ss_pred             cccEEEcCCCcccccCcc------cccCCCcccEEEccCCccccccchhhhccCCCCEEEccCCcCcCCCChHhhhcCcc
Q 039528            6 NLFELNLKGNNVEGHLPN------CLKYLSHLKVFDISQNQLSGSLSSTITSLTSLEYLDLSYNNFEGPCPLSLLAHHSK   79 (136)
Q Consensus         6 ~L~~l~l~~~~l~~~~~~------~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~~   79 (136)
                      .++.+++..+.+.+..|.      .+..+++|++|++++|.+++ +| .+..+++|++|++++|.+. .+|. .+..+++
T Consensus        19 ~l~~l~l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~l~~-l~-~~~~l~~L~~L~l~~n~l~-~l~~-~~~~~~~   94 (198)
T 1ds9_A           19 SVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIK-KIEN-LDAVADT   94 (198)
T ss_dssp             CCCCTTCSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEEESC-CC-CHHHHTTCCEEEEEEEEEC-SCSS-HHHHHHH
T ss_pred             cccCcchheeEeccccCcHhhhhHHHhcCCCCCEEECCCCCCcc-cc-ccccCCCCCEEECCCCCcc-cccc-hhhcCCc
Confidence            334444444444444433      55666666666666666653 34 5566666666666666665 3442 2444566


Q ss_pred             ceEEEeccceeeeccCCCCCccccEEEcCCCCCCCCCh--hhhcCCCCcEEEcCCCcC
Q 039528           80 LEVLVLSSTILVKTENFLPTFQLKELGLANCSLNVVPT--FLLHQYDLKYLDLSHNNL  135 (136)
Q Consensus        80 l~~l~l~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~--~~~~~~~L~~l~l~~n~l  135 (136)
                      |+.+++++|.+...+.+..+++|+.|++++|.++.++.  .+..+++|+++++++|.+
T Consensus        95 L~~L~L~~N~l~~l~~~~~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l  152 (198)
T 1ds9_A           95 LEELWISYNQIASLSGIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPL  152 (198)
T ss_dssp             CSEEEEEEEECCCHHHHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHH
T ss_pred             CCEEECcCCcCCcCCccccCCCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCcc
Confidence            66666666665554444444566666666666655443  455666666666666643

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=99.66  E-value=2.4e-17  Score=107.90  Aligned_cols=130  Identities=26%  Similarity=0.247  Sum_probs=59.2

Q ss_pred             CCcccEEEcCCCcccccCcccccCCCcccEEEccCC-ccccc-cchhhhccCCCCEEEccCC-cCcCCCChHhhhcCc-c
Q 039528            4 LKNLFELNLKGNNVEGHLPNCLKYLSHLKVFDISQN-QLSGS-LSSTITSLTSLEYLDLSYN-NFEGPCPLSLLAHHS-K   79 (136)
Q Consensus         4 l~~L~~l~l~~~~l~~~~~~~~~~l~~L~~L~l~~~-~~~~~-~~~~~~~~~~l~~l~l~~~-~~~~~~~~~~~~~~~-~   79 (136)
                      +++|++|++++|.+++..+..+..+++|++|++++| .+++. .+..+..+++|++|++++| .+++......+..++ +
T Consensus       117 ~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~  196 (336)
T 2ast_B          117 CSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSET  196 (336)
T ss_dssp             BCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTT
T ss_pred             CCCCCEEeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccC
Confidence            344444444444444444444444444444444444 33321 2333444455555555554 443211112244455 5


Q ss_pred             ceEEEeccce--eeec--c-CCCCCccccEEEcCCCC-C-CCCChhhhcCCCCcEEEcCCC
Q 039528           80 LEVLVLSSTI--LVKT--E-NFLPTFQLKELGLANCS-L-NVVPTFLLHQYDLKYLDLSHN  133 (136)
Q Consensus        80 l~~l~l~~~~--~~~~--~-~~~~~~~L~~l~l~~n~-~-~~~~~~~~~~~~L~~l~l~~n  133 (136)
                      |+++++++|.  +.+.  + .+..+++|+.|++++|. + ...+..+..+++|++|++++|
T Consensus       197 L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~  257 (336)
T 2ast_B          197 ITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRC  257 (336)
T ss_dssp             CCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTC
T ss_pred             CCEEEeCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCC
Confidence            5555555542  2111  1 12234456666666665 3 234445556666666666655

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=99.65  E-value=1.9e-15  Score=90.87  Aligned_cols=109  Identities=21%  Similarity=0.279  Sum_probs=93.6

Q ss_pred             CCcccEEEcCCCcccccCcccccCCCcccEEEccCCccccccchhhhccCCCCEEEccCCcCcCCCChHhhhcCccceEE
Q 039528            4 LKNLFELNLKGNNVEGHLPNCLKYLSHLKVFDISQNQLSGSLSSTITSLTSLEYLDLSYNNFEGPCPLSLLAHHSKLEVL   83 (136)
Q Consensus         4 l~~L~~l~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~~l~~l   83 (136)
                      .++++.|++++|.+++..+..+..+++|++|++++|.+++..+..+..+++|++|++++|.+++ .+...+..+++|+++
T Consensus        27 ~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~-~~~~~~~~l~~L~~L  105 (177)
T 2o6r_A           27 PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQS-LPNGVFDKLTQLKEL  105 (177)
T ss_dssp             CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCC-CCTTTTTTCTTCCEE
T ss_pred             CCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCCCccc-cCHHHhhCCcccCEE
Confidence            4679999999999997666778899999999999999987666778899999999999999984 454557889999999


Q ss_pred             EeccceeeeccC--CCCCccccEEEcCCCCCC
Q 039528           84 VLSSTILVKTEN--FLPTFQLKELGLANCSLN  113 (136)
Q Consensus        84 ~l~~~~~~~~~~--~~~~~~L~~l~l~~n~~~  113 (136)
                      ++++|.+...+.  +..+++|+++++++|.+.
T Consensus       106 ~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~  137 (177)
T 2o6r_A          106 ALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWD  137 (177)
T ss_dssp             ECCSSCCSCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred             ECcCCcceEeCHHHhcCCcccCEEEecCCCee
Confidence            999998876653  466789999999999983

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=99.64  E-value=1.4e-16  Score=104.29  Aligned_cols=132  Identities=23%  Similarity=0.234  Sum_probs=80.9

Q ss_pred             CCCcccEEEcCCCccccc-CcccccCCCcccEEEccCCccccccchhhhccCCCCEEEccCC-cCcCCCChHhhhcCccc
Q 039528            3 ELKNLFELNLKGNNVEGH-LPNCLKYLSHLKVFDISQNQLSGSLSSTITSLTSLEYLDLSYN-NFEGPCPLSLLAHHSKL   80 (136)
Q Consensus         3 ~l~~L~~l~l~~~~l~~~-~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~l~~~-~~~~~~~~~~~~~~~~l   80 (136)
                      .+++|++|++++|.+.+. .+..+..+++|++|++++|.+++..+..+..+++|++|++++| .+++......+..+++|
T Consensus        91 ~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L  170 (336)
T 2ast_B           91 SPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRL  170 (336)
T ss_dssp             CCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTC
T ss_pred             cCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCC
Confidence            356677777777766644 5556666777777777777666556666666777777777776 44421112335566777


Q ss_pred             eEEEeccc-eeeec--c-CCCCCc-cccEEEcCCCC--C--CCCChhhhcCCCCcEEEcCCCc
Q 039528           81 EVLVLSST-ILVKT--E-NFLPTF-QLKELGLANCS--L--NVVPTFLLHQYDLKYLDLSHNN  134 (136)
Q Consensus        81 ~~l~l~~~-~~~~~--~-~~~~~~-~L~~l~l~~n~--~--~~~~~~~~~~~~L~~l~l~~n~  134 (136)
                      +++++++| .+.+.  + .+..++ +|++|++++|.  +  ..++..+..+++|+.|++++|.
T Consensus       171 ~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~  233 (336)
T 2ast_B          171 DELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSV  233 (336)
T ss_dssp             CEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCT
T ss_pred             CEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEeCCCCC
Confidence            77777776 55432  1 234455 67777777763  3  3355566667777777777665

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=99.64  E-value=1.8e-15  Score=92.12  Aligned_cols=107  Identities=21%  Similarity=0.247  Sum_probs=92.9

Q ss_pred             CcccEEEcCCCcccccCcc-cccCCCcccEEEccCCccccccchhhhccCCCCEEEccCCcCcCCCChHhhhcCccceEE
Q 039528            5 KNLFELNLKGNNVEGHLPN-CLKYLSHLKVFDISQNQLSGSLSSTITSLTSLEYLDLSYNNFEGPCPLSLLAHHSKLEVL   83 (136)
Q Consensus         5 ~~L~~l~l~~~~l~~~~~~-~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~~l~~l   83 (136)
                      +++++|++++|.+++..+. .+..+++|++|++++|.+++..|..+..+++|++|++++|++++..+ ..+..+++|+++
T Consensus        29 ~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~-~~~~~l~~L~~L  107 (192)
T 1w8a_A           29 LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISN-KMFLGLHQLKTL  107 (192)
T ss_dssp             TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCCCCEECS-SSSTTCTTCCEE
T ss_pred             CCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCCcCCccCH-HHhcCCCCCCEE
Confidence            3789999999999966554 48899999999999999998888999999999999999999985444 457889999999


Q ss_pred             Eeccceeeec--cCCCCCccccEEEcCCCCC
Q 039528           84 VLSSTILVKT--ENFLPTFQLKELGLANCSL  112 (136)
Q Consensus        84 ~l~~~~~~~~--~~~~~~~~L~~l~l~~n~~  112 (136)
                      ++++|.+...  ..+..+++|++|++++|.+
T Consensus       108 ~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l  138 (192)
T 1w8a_A          108 NLYDNQISCVMPGSFEHLNSLTSLNLASNPF  138 (192)
T ss_dssp             ECCSSCCCEECTTSSTTCTTCCEEECTTCCB
T ss_pred             ECCCCcCCeeCHHHhhcCCCCCEEEeCCCCc
Confidence            9999988655  3567788999999999998

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=99.64  E-value=8.3e-15  Score=99.82  Aligned_cols=57  Identities=28%  Similarity=0.380  Sum_probs=25.2

Q ss_pred             CCcccEEEcCCCcccccCcccccCCCcccEEEccCCccccccchhhhccCCCCEEEccCCcCc
Q 039528            4 LKNLFELNLKGNNVEGHLPNCLKYLSHLKVFDISQNQLSGSLSSTITSLTSLEYLDLSYNNFE   66 (136)
Q Consensus         4 l~~L~~l~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~   66 (136)
                      +++|++|++++|.+++. +  +..+++|++|++++|.+++. +  +..+++|++|++++|.++
T Consensus        63 l~~L~~L~Ls~n~l~~~-~--~~~l~~L~~L~Ls~N~l~~~-~--~~~l~~L~~L~L~~N~l~  119 (457)
T 3bz5_A           63 LTGLTKLICTSNNITTL-D--LSQNTNLTYLACDSNKLTNL-D--VTPLTKLTYLNCDTNKLT  119 (457)
T ss_dssp             CTTCSEEECCSSCCSCC-C--CTTCTTCSEEECCSSCCSCC-C--CTTCTTCCEEECCSSCCS
T ss_pred             cCCCCEEEccCCcCCeE-c--cccCCCCCEEECcCCCCcee-e--cCCCCcCCEEECCCCcCC
Confidence            34455555555554432 1  44444444444444444432 1  334444444444444443

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=99.63  E-value=2.7e-15  Score=104.57  Aligned_cols=119  Identities=23%  Similarity=0.232  Sum_probs=93.6

Q ss_pred             cccEEEcCCCcccccCcccccCCCcccEEEccCCccccccchhhhccCCCCEEEccCCcCcCCCChHhhhcCccceEEEe
Q 039528            6 NLFELNLKGNNVEGHLPNCLKYLSHLKVFDISQNQLSGSLSSTITSLTSLEYLDLSYNNFEGPCPLSLLAHHSKLEVLVL   85 (136)
Q Consensus         6 ~L~~l~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~~l~~l~l   85 (136)
                      .|+.|++++|.+++ +|. +..+++|++|++++|.++ .+|..+..+++|++|++++|.+++ +|  .+..+++|+.|++
T Consensus       442 ~L~~L~Ls~n~l~~-lp~-~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~~-lp--~l~~l~~L~~L~L  515 (567)
T 1dce_A          442 DVRVLHLAHKDLTV-LCH-LEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALEN-VD--GVANLPRLQELLL  515 (567)
T ss_dssp             TCSEEECTTSCCSS-CCC-GGGGTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCC-CG--GGTTCSSCCEEEC
T ss_pred             CceEEEecCCCCCC-CcC-ccccccCcEeecCccccc-ccchhhhcCCCCCEEECCCCCCCC-Cc--ccCCCCCCcEEEC
Confidence            47788999998885 565 888889999999998888 678888888999999999998884 55  3778888999999


Q ss_pred             ccceeeec--c-CCCCCccccEEEcCCCCCCCCCh----hhhcCCCCcEEEc
Q 039528           86 SSTILVKT--E-NFLPTFQLKELGLANCSLNVVPT----FLLHQYDLKYLDL  130 (136)
Q Consensus        86 ~~~~~~~~--~-~~~~~~~L~~l~l~~n~~~~~~~----~~~~~~~L~~l~l  130 (136)
                      ++|.+...  + .+..+++|+.|++++|.++.+|.    .+..+++|+.|++
T Consensus       516 s~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~l~~~lp~L~~L~l  567 (567)
T 1dce_A          516 CNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSILT  567 (567)
T ss_dssp             CSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCTTCSEEEC
T ss_pred             CCCCCCCCCCcHHHhcCCCCCEEEecCCcCCCCccHHHHHHHHCcccCccCC
Confidence            88877655  2 45667788899999988855543    3455788888864

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=99.63  E-value=5.7e-15  Score=102.88  Aligned_cols=116  Identities=24%  Similarity=0.238  Sum_probs=76.6

Q ss_pred             cccEEEcCCCcccccCcccccCCCcccEEEccCCccccccchhhhccCCCCEEEccCCcCcCCCChHhhhcCccceEEEe
Q 039528            6 NLFELNLKGNNVEGHLPNCLKYLSHLKVFDISQNQLSGSLSSTITSLTSLEYLDLSYNNFEGPCPLSLLAHHSKLEVLVL   85 (136)
Q Consensus         6 ~L~~l~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~~l~~l~l   85 (136)
                      +|+.|++++|.+++ +|.   .+++|++|++++|.+++ +|.   .+++|++|++++|.+++ +|.  +.  ++|+.|++
T Consensus       121 ~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~L~~-lp~--l~--~~L~~L~L  187 (571)
T 3cvr_A          121 SLKHLDVDNNQLTM-LPE---LPALLEYINADNNQLTM-LPE---LPTSLEVLSVRNNQLTF-LPE--LP--ESLEALDV  187 (571)
T ss_dssp             TCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSC-CCC--CC--TTCCEEEC
T ss_pred             CCCEEECCCCcCCC-CCC---cCccccEEeCCCCccCc-CCC---cCCCcCEEECCCCCCCC-cch--hh--CCCCEEEC
Confidence            34444444444443 333   34556666666666553 333   35667777777777763 553  32  77888888


Q ss_pred             ccceeeeccCCCCCccc-------cEEEcCCCCCCCCChhhhcCCCCcEEEcCCCcCC
Q 039528           86 SSTILVKTENFLPTFQL-------KELGLANCSLNVVPTFLLHQYDLKYLDLSHNNLV  136 (136)
Q Consensus        86 ~~~~~~~~~~~~~~~~L-------~~l~l~~n~~~~~~~~~~~~~~L~~l~l~~n~l~  136 (136)
                      ++|.+...+.+..  +|       +.|++++|.++.+|..+..+++|+.|++++|.++
T Consensus       188 s~N~L~~lp~~~~--~L~~~~~~L~~L~Ls~N~l~~lp~~l~~l~~L~~L~L~~N~l~  243 (571)
T 3cvr_A          188 STNLLESLPAVPV--RNHHSEETEIFFRCRENRITHIPENILSLDPTCTIILEDNPLS  243 (571)
T ss_dssp             CSSCCSSCCCCC----------CCEEEECCSSCCCCCCGGGGGSCTTEEEECCSSSCC
T ss_pred             cCCCCCchhhHHH--hhhcccccceEEecCCCcceecCHHHhcCCCCCEEEeeCCcCC
Confidence            8887776655322  67       9999999999989998888999999999999874

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=99.63  E-value=8.3e-15  Score=99.82  Aligned_cols=124  Identities=24%  Similarity=0.262  Sum_probs=70.6

Q ss_pred             CCCCcccEEEcCCCcccccCcccccCCCcccEEEccCCccccccch-------------------hhhccCCCCEEEccC
Q 039528            2 CELKNLFELNLKGNNVEGHLPNCLKYLSHLKVFDISQNQLSGSLSS-------------------TITSLTSLEYLDLSY   62 (136)
Q Consensus         2 ~~l~~L~~l~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~-------------------~~~~~~~l~~l~l~~   62 (136)
                      ..+++|++|++++|.+++ ++  +..+++|++|++++|.+++....                   .+..+++|++|++++
T Consensus       103 ~~l~~L~~L~L~~N~l~~-l~--~~~l~~L~~L~l~~N~l~~l~l~~l~~L~~L~l~~n~~~~~~~~~~l~~L~~L~ls~  179 (457)
T 3bz5_A          103 TPLTKLTYLNCDTNKLTK-LD--VSQNPLLTYLNCARNTLTEIDVSHNTQLTELDCHLNKKITKLDVTPQTQLTTLDCSF  179 (457)
T ss_dssp             TTCTTCCEEECCSSCCSC-CC--CTTCTTCCEEECTTSCCSCCCCTTCTTCCEEECTTCSCCCCCCCTTCTTCCEEECCS
T ss_pred             CCCCcCCEEECCCCcCCe-ec--CCCCCcCCEEECCCCccceeccccCCcCCEEECCCCCcccccccccCCcCCEEECCC
Confidence            456677777777777764 22  56666777777776666542100                   123344445555555


Q ss_pred             CcCcCCCChHhhhcCccceEEEeccceeeeccCCCCCccccEEEcCCCCCCCCChhhhcCCCCcEEEcCCCcC
Q 039528           63 NNFEGPCPLSLLAHHSKLEVLVLSSTILVKTENFLPTFQLKELGLANCSLNVVPTFLLHQYDLKYLDLSHNNL  135 (136)
Q Consensus        63 ~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~L~~l~l~~n~l  135 (136)
                      |.+++ ++   +..+++|+.+++++|.+... .+..+++|+.|++++|.++.+|  ++.+++|+.|++++|.+
T Consensus       180 n~l~~-l~---l~~l~~L~~L~l~~N~l~~~-~l~~l~~L~~L~Ls~N~l~~ip--~~~l~~L~~L~l~~N~l  245 (457)
T 3bz5_A          180 NKITE-LD---VSQNKLLNRLNCDTNNITKL-DLNQNIQLTFLDCSSNKLTEID--VTPLTQLTYFDCSVNPL  245 (457)
T ss_dssp             SCCCC-CC---CTTCTTCCEEECCSSCCSCC-CCTTCTTCSEEECCSSCCSCCC--CTTCTTCSEEECCSSCC
T ss_pred             Cccce-ec---cccCCCCCEEECcCCcCCee-ccccCCCCCEEECcCCcccccC--ccccCCCCEEEeeCCcC
Confidence            55442 22   33455555555555554443 2445556667777777765565  56666777777776665

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=99.63  E-value=7.6e-16  Score=102.03  Aligned_cols=60  Identities=20%  Similarity=0.220  Sum_probs=28.2

Q ss_pred             ccEEEcCCCcccccCc----ccccCCC-cccEEEccCCccccccchhhhcc-----CCCCEEEccCCcCc
Q 039528            7 LFELNLKGNNVEGHLP----NCLKYLS-HLKVFDISQNQLSGSLSSTITSL-----TSLEYLDLSYNNFE   66 (136)
Q Consensus         7 L~~l~l~~~~l~~~~~----~~~~~l~-~L~~L~l~~~~~~~~~~~~~~~~-----~~l~~l~l~~~~~~   66 (136)
                      |++|++++|.+++..+    ..+..++ +|++|++++|.+++..+..+..+     ++|++|++++|.+.
T Consensus        24 L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~   93 (362)
T 3goz_A           24 VTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNFLS   93 (362)
T ss_dssp             CCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGG
T ss_pred             ceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCCcCC
Confidence            5555555555554333    3444444 45555555555443333333332     44555555554444

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=99.62  E-value=3.7e-16  Score=103.53  Aligned_cols=88  Identities=22%  Similarity=0.311  Sum_probs=49.2

Q ss_pred             CC-cccEEEcCCCcccccCcccccCC-----CcccEEEccCCccccccchhhh----cc-CCCCEEEccCCcCcCCCChH
Q 039528            4 LK-NLFELNLKGNNVEGHLPNCLKYL-----SHLKVFDISQNQLSGSLSSTIT----SL-TSLEYLDLSYNNFEGPCPLS   72 (136)
Q Consensus         4 l~-~L~~l~l~~~~l~~~~~~~~~~l-----~~L~~L~l~~~~~~~~~~~~~~----~~-~~l~~l~l~~~~~~~~~~~~   72 (136)
                      ++ +|++|++++|.+++..+..+..+     ++|++|++++|.+++..+..+.    .. ++|++|++++|.+.+..+..
T Consensus        49 ~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~  128 (362)
T 3goz_A           49 TPASVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSE  128 (362)
T ss_dssp             CCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHH
T ss_pred             CCCceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHH
Confidence            44 67777777777766555555543     6677777777766644444332    22 56666666666665332211


Q ss_pred             h---hhc-CccceEEEeccceee
Q 039528           73 L---LAH-HSKLEVLVLSSTILV   91 (136)
Q Consensus        73 ~---~~~-~~~l~~l~l~~~~~~   91 (136)
                      .   +.. .++|+++++++|.+.
T Consensus       129 l~~~l~~~~~~L~~L~Ls~N~l~  151 (362)
T 3goz_A          129 FKQAFSNLPASITSLNLRGNDLG  151 (362)
T ss_dssp             HHHHHTTSCTTCCEEECTTSCGG
T ss_pred             HHHHHHhCCCceeEEEccCCcCC
Confidence            1   112 245666666666554

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=99.62  E-value=1.3e-16  Score=113.90  Aligned_cols=114  Identities=20%  Similarity=0.269  Sum_probs=98.8

Q ss_pred             CCCCcccEEEcCCCcccccCcccccCCCcccEEEccCCccccccchhhhccCCCCEEEccCCcCcCCCChHhhhcCccce
Q 039528            2 CELKNLFELNLKGNNVEGHLPNCLKYLSHLKVFDISQNQLSGSLSSTITSLTSLEYLDLSYNNFEGPCPLSLLAHHSKLE   81 (136)
Q Consensus         2 ~~l~~L~~l~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~~l~   81 (136)
                      ..++.|+.|++++|.+. .+|..+..+++|++|++++|.++ .+|..+..+++|++|++++|.++ .+|.. +..+++|+
T Consensus       221 ~~l~~L~~L~Ls~n~l~-~l~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~-~lp~~-~~~l~~L~  296 (727)
T 4b8c_D          221 YDDQLWHALDLSNLQIF-NISANIFKYDFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLT-SLPAE-LGSCFQLK  296 (727)
T ss_dssp             -CCCCCCEEECTTSCCS-CCCGGGGGCCSCSCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSCCS-SCCSS-GGGGTTCS
T ss_pred             ccCCCCcEEECCCCCCC-CCChhhcCCCCCCEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCcCC-ccChh-hcCCCCCC
Confidence            45788999999999998 67777779999999999999998 78899999999999999999998 77755 78899999


Q ss_pred             EEEeccceeeecc-CCCCCccccEEEcCCCCCC-CCChhh
Q 039528           82 VLVLSSTILVKTE-NFLPTFQLKELGLANCSLN-VVPTFL  119 (136)
Q Consensus        82 ~l~l~~~~~~~~~-~~~~~~~L~~l~l~~n~~~-~~~~~~  119 (136)
                      +|++++|.+...+ .+..+.+|++|++++|.++ .+|..+
T Consensus       297 ~L~L~~N~l~~lp~~~~~l~~L~~L~L~~N~l~~~~p~~~  336 (727)
T 4b8c_D          297 YFYFFDNMVTTLPWEFGNLCNLQFLGVEGNPLEKQFLKIL  336 (727)
T ss_dssp             EEECCSSCCCCCCSSTTSCTTCCCEECTTSCCCSHHHHHH
T ss_pred             EEECCCCCCCccChhhhcCCCccEEeCCCCccCCCChHHH
Confidence            9999999887765 4677889999999999994 455444

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=99.61  E-value=1.2e-15  Score=89.30  Aligned_cols=105  Identities=24%  Similarity=0.208  Sum_probs=88.1

Q ss_pred             CCCCcccEEEcCCCcccccCcccccCCCcccEEEccCCccccccchhhhccCCCCEEEccCCcCcCCCChHhhhcCccce
Q 039528            2 CELKNLFELNLKGNNVEGHLPNCLKYLSHLKVFDISQNQLSGSLSSTITSLTSLEYLDLSYNNFEGPCPLSLLAHHSKLE   81 (136)
Q Consensus         2 ~~l~~L~~l~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~~l~   81 (136)
                      ..+++|+.|++++|.+++.  ..+..+++|++|++++|.+++..|..+..+++|++|++++|.+++......+..+++|+
T Consensus        39 ~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ls~N~i~~~~~~~~~~~l~~L~  116 (149)
T 2je0_A           39 DEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLK  116 (149)
T ss_dssp             TTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEECTTSCCCSHHHHGGGGGCTTCC
T ss_pred             hhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEEECCCCcCCChHHHHHHhhCCCCC
Confidence            5688999999999999965  77889999999999999998768888888999999999999998422124578899999


Q ss_pred             EEEeccceeeeccC-----CCCCccccEEEcC
Q 039528           82 VLVLSSTILVKTEN-----FLPTFQLKELGLA  108 (136)
Q Consensus        82 ~l~l~~~~~~~~~~-----~~~~~~L~~l~l~  108 (136)
                      ++++++|.+...+.     +..+++|+.|+++
T Consensus       117 ~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~  148 (149)
T 2je0_A          117 SLDLFNCEVTNLNDYRENVFKLLPQLTYLDGY  148 (149)
T ss_dssp             EEECTTCGGGGSTTHHHHHHHHCTTCCEETTB
T ss_pred             EEeCcCCcccchHHHHHHHHHHCCCcccccCC
Confidence            99999998876654     4566788888875

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=99.59  E-value=1.8e-14  Score=100.43  Aligned_cols=111  Identities=28%  Similarity=0.345  Sum_probs=47.4

Q ss_pred             ccEEEcCCCcccccCcccccCCCcccEEEccCCccccccchhhhccCCCCEEEccCCcCcCCCChHhhhcCccceEEEec
Q 039528            7 LFELNLKGNNVEGHLPNCLKYLSHLKVFDISQNQLSGSLSSTITSLTSLEYLDLSYNNFEGPCPLSLLAHHSKLEVLVLS   86 (136)
Q Consensus         7 L~~l~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~~l~~l~l~   86 (136)
                      |+.|++++|.++ .+|   ..+++|++|++++|.+++ +|. +..  +|++|++++|.+++ +|.    .+++|+.++++
T Consensus        82 L~~L~Ls~N~l~-~ip---~~l~~L~~L~Ls~N~l~~-ip~-l~~--~L~~L~Ls~N~l~~-lp~----~l~~L~~L~Ls  148 (571)
T 3cvr_A           82 ITVLEITQNALI-SLP---ELPASLEYLDACDNRLST-LPE-LPA--SLKHLDVDNNQLTM-LPE----LPALLEYINAD  148 (571)
T ss_dssp             CSEEECCSSCCS-CCC---CCCTTCCEEECCSSCCSC-CCC-CCT--TCCEEECCSSCCSC-CCC----CCTTCCEEECC
T ss_pred             CCEEECcCCCCc-ccc---cccCCCCEEEccCCCCCC-cch-hhc--CCCEEECCCCcCCC-CCC----cCccccEEeCC
Confidence            444444444444 233   223444455554444443 222 221  44444444444442 331    33444445544


Q ss_pred             cceeeeccCCCCCccccEEEcCCCCCCCCChhhhcCCCCcEEEcCCCcC
Q 039528           87 STILVKTENFLPTFQLKELGLANCSLNVVPTFLLHQYDLKYLDLSHNNL  135 (136)
Q Consensus        87 ~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~L~~l~l~~n~l  135 (136)
                      +|.+...+.  .+++|+.|++++|.++.+|. +.  ++|+.|++++|.+
T Consensus       149 ~N~l~~lp~--~l~~L~~L~Ls~N~L~~lp~-l~--~~L~~L~Ls~N~L  192 (571)
T 3cvr_A          149 NNQLTMLPE--LPTSLEVLSVRNNQLTFLPE-LP--ESLEALDVSTNLL  192 (571)
T ss_dssp             SSCCSCCCC--CCTTCCEEECCSSCCSCCCC-CC--TTCCEEECCSSCC
T ss_pred             CCccCcCCC--cCCCcCEEECCCCCCCCcch-hh--CCCCEEECcCCCC
Confidence            444433332  22344444444444444444 22  4444444444443

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=99.59  E-value=1.6e-14  Score=86.75  Aligned_cols=106  Identities=16%  Similarity=0.170  Sum_probs=81.7

Q ss_pred             ccEEEcCCCcccccCcccccCCCcccEEEccCCccccccchhhhccCCCCEEEccCCcCcCCCChHhhhcCccceEEEec
Q 039528            7 LFELNLKGNNVEGHLPNCLKYLSHLKVFDISQNQLSGSLSSTITSLTSLEYLDLSYNNFEGPCPLSLLAHHSKLEVLVLS   86 (136)
Q Consensus         7 L~~l~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~~l~~l~l~   86 (136)
                      -+.++++++.++ .+|..+.  +.|++|++++|.+++..|..+..+++|++|++++|++++ ++...+..+++|++++++
T Consensus        14 ~~~l~~~~n~l~-~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~-i~~~~~~~l~~L~~L~L~   89 (174)
T 2r9u_A           14 QTLVNCQNIRLA-SVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTA-IPTGVFDKLTQLTQLDLN   89 (174)
T ss_dssp             SSEEECCSSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCC-CCTTTTTTCTTCCEEECC
T ss_pred             CcEEEeCCCCCC-ccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCc-cChhHhCCcchhhEEECC
Confidence            367888888887 5665543  788899999998887777888888999999999998874 555556778888888888


Q ss_pred             cceeeecc--CCCCCccccEEEcCCCCCCCCC
Q 039528           87 STILVKTE--NFLPTFQLKELGLANCSLNVVP  116 (136)
Q Consensus        87 ~~~~~~~~--~~~~~~~L~~l~l~~n~~~~~~  116 (136)
                      +|.+...+  .+..+++|+.|++++|.+...+
T Consensus        90 ~N~l~~l~~~~~~~l~~L~~L~L~~N~~~c~~  121 (174)
T 2r9u_A           90 DNHLKSIPRGAFDNLKSLTHIYLYNNPWDCEC  121 (174)
T ss_dssp             SSCCCCCCTTTTTTCTTCSEEECCSSCBCTTB
T ss_pred             CCccceeCHHHhccccCCCEEEeCCCCccccc
Confidence            88776654  2566778888888888885433

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=99.59  E-value=1.3e-15  Score=101.53  Aligned_cols=58  Identities=19%  Similarity=0.234  Sum_probs=28.0

Q ss_pred             ccceEEEeccceeeecc------CCCCCccccEEEcCCCCCC------CCChhhhcCCCCcEEEcCCCcC
Q 039528           78 SKLEVLVLSSTILVKTE------NFLPTFQLKELGLANCSLN------VVPTFLLHQYDLKYLDLSHNNL  135 (136)
Q Consensus        78 ~~l~~l~l~~~~~~~~~------~~~~~~~L~~l~l~~n~~~------~~~~~~~~~~~L~~l~l~~n~l  135 (136)
                      ++|+++++++|.+.+..      .+..+++|++|++++|.++      ..+..+..+++|+.|++++|.+
T Consensus       159 ~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l  228 (386)
T 2ca6_A          159 PPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTF  228 (386)
T ss_dssp             CCCCEEECCSSCCTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCC
T ss_pred             CCCcEEECCCCCCCcHHHHHHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCC
Confidence            45555555555443211      1123335556666555553      1222455556666666666554

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=99.58  E-value=3.9e-14  Score=99.64  Aligned_cols=77  Identities=25%  Similarity=0.239  Sum_probs=61.1

Q ss_pred             CCCCEEEccCCcCcCCCChHhhhcCccceEEEeccceeeeccCCCCCccccEEEcCCCCCCCCChhhhcCCCCcEEEcCC
Q 039528           53 TSLEYLDLSYNNFEGPCPLSLLAHHSKLEVLVLSSTILVKTENFLPTFQLKELGLANCSLNVVPTFLLHQYDLKYLDLSH  132 (136)
Q Consensus        53 ~~l~~l~l~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~L~~l~l~~  132 (136)
                      ++|+.|++++|.+++ +|    ..+++|+.+++++|.+...+.  .+++|+.|++++|.++.+|..+..+++|+.|++++
T Consensus       221 ~~L~~L~Ls~N~L~~-lp----~~l~~L~~L~Ls~N~L~~lp~--~~~~L~~L~Ls~N~L~~lp~~l~~l~~L~~L~L~~  293 (622)
T 3g06_A          221 SGLKELIVSGNRLTS-LP----VLPSELKELMVSGNRLTSLPM--LPSGLLSLSVYRNQLTRLPESLIHLSSETTVNLEG  293 (622)
T ss_dssp             TTCCEEECCSSCCSC-CC----CCCTTCCEEECCSSCCSCCCC--CCTTCCEEECCSSCCCSCCGGGGGSCTTCEEECCS
T ss_pred             CCCCEEEccCCccCc-CC----CCCCcCcEEECCCCCCCcCCc--ccccCcEEeCCCCCCCcCCHHHhhccccCEEEecC
Confidence            567777777777763 44    345778888888887776655  45689999999999999999999999999999999


Q ss_pred             CcCC
Q 039528          133 NNLV  136 (136)
Q Consensus       133 n~l~  136 (136)
                      |.++
T Consensus       294 N~l~  297 (622)
T 3g06_A          294 NPLS  297 (622)
T ss_dssp             CCCC
T ss_pred             CCCC
Confidence            9874

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=99.58  E-value=1.6e-17  Score=101.68  Aligned_cols=125  Identities=23%  Similarity=0.272  Sum_probs=104.0

Q ss_pred             CCCcccEEEcCCCcccccCcccccCCCcccEEEccCCccccccchhhhccCCCCEEEccCCcCcCCCChHhhhcCccceE
Q 039528            3 ELKNLFELNLKGNNVEGHLPNCLKYLSHLKVFDISQNQLSGSLSSTITSLTSLEYLDLSYNNFEGPCPLSLLAHHSKLEV   82 (136)
Q Consensus         3 ~l~~L~~l~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~~l~~   82 (136)
                      .+++|++|++++|.+.+ +| .+..+++|++|++++|.++ .+|..+..+++|++|++++|.+++ ++  .+..+++|++
T Consensus        46 ~l~~L~~L~ls~n~l~~-l~-~~~~l~~L~~L~l~~n~l~-~l~~~~~~~~~L~~L~L~~N~l~~-l~--~~~~l~~L~~  119 (198)
T 1ds9_A           46 TLKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIK-KIENLDAVADTLEELWISYNQIAS-LS--GIEKLVNLRV  119 (198)
T ss_dssp             HTTTCSEEECSEEEESC-CC-CHHHHTTCCEEEEEEEEEC-SCSSHHHHHHHCSEEEEEEEECCC-HH--HHHHHHHSSE
T ss_pred             cCCCCCEEECCCCCCcc-cc-ccccCCCCCEEECCCCCcc-cccchhhcCCcCCEEECcCCcCCc-CC--ccccCCCCCE
Confidence            46789999999999996 66 8889999999999999998 567777788999999999999984 44  3778899999


Q ss_pred             EEeccceeeecc---CCCCCccccEEEcCCCCCCC-CCh----------hhhcCCCCcEEEcCCCcC
Q 039528           83 LVLSSTILVKTE---NFLPTFQLKELGLANCSLNV-VPT----------FLLHQYDLKYLDLSHNNL  135 (136)
Q Consensus        83 l~l~~~~~~~~~---~~~~~~~L~~l~l~~n~~~~-~~~----------~~~~~~~L~~l~l~~n~l  135 (136)
                      +++++|.+...+   .+..+++|++|++++|.+.. .|.          .+..+++|+.||  ++.+
T Consensus       120 L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~l~~L~~Ld--~~~i  184 (198)
T 1ds9_A          120 LYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD--GMPV  184 (198)
T ss_dssp             EEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHHHHHCSSCSEEC--CGGG
T ss_pred             EECCCCcCCchhHHHHHhcCCCCCEEEecCCccccccccccchHHHHHHHHHhCCCcEEEC--Cccc
Confidence            999999887644   35778899999999999833 332          378899999987  5543

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=99.58  E-value=6.7e-15  Score=88.42  Aligned_cols=109  Identities=17%  Similarity=0.167  Sum_probs=91.0

Q ss_pred             ccccCCCcccEEEccCCccccccchhhhcc-CCCCEEEccCCcCcCCCChHhhhcCccceEEEeccceeeeccC--CCCC
Q 039528           23 NCLKYLSHLKVFDISQNQLSGSLSSTITSL-TSLEYLDLSYNNFEGPCPLSLLAHHSKLEVLVLSSTILVKTEN--FLPT   99 (136)
Q Consensus        23 ~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~-~~l~~l~l~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~--~~~~   99 (136)
                      ..+.++.+|++|++++|.++. ++. +..+ ++|++|++++|.+++ ++  .+..+++|+.+++++|.+...+.  +..+
T Consensus        13 ~~~~~~~~L~~L~l~~n~l~~-i~~-~~~~~~~L~~L~Ls~N~l~~-~~--~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l   87 (176)
T 1a9n_A           13 AQYTNAVRDRELDLRGYKIPV-IEN-LGATLDQFDAIDFSDNEIRK-LD--GFPLLRRLKTLLVNNNRICRIGEGLDQAL   87 (176)
T ss_dssp             CEEECTTSCEEEECTTSCCCS-CCC-GGGGTTCCSEEECCSSCCCE-EC--CCCCCSSCCEEECCSSCCCEECSCHHHHC
T ss_pred             HhcCCcCCceEEEeeCCCCch-hHH-hhhcCCCCCEEECCCCCCCc-cc--ccccCCCCCEEECCCCcccccCcchhhcC
Confidence            346778999999999999984 444 4444 499999999999984 32  47789999999999998877653  3667


Q ss_pred             ccccEEEcCCCCCCCCCh--hhhcCCCCcEEEcCCCcCC
Q 039528          100 FQLKELGLANCSLNVVPT--FLLHQYDLKYLDLSHNNLV  136 (136)
Q Consensus       100 ~~L~~l~l~~n~~~~~~~--~~~~~~~L~~l~l~~n~l~  136 (136)
                      ++|+.|++++|.++.+|.  .+..+++|+.|++++|.++
T Consensus        88 ~~L~~L~L~~N~i~~~~~~~~l~~l~~L~~L~l~~N~i~  126 (176)
T 1a9n_A           88 PDLTELILTNNSLVELGDLDPLASLKSLTYLCILRNPVT  126 (176)
T ss_dssp             TTCCEEECCSCCCCCGGGGGGGGGCTTCCEEECCSSGGG
T ss_pred             CCCCEEECCCCcCCcchhhHhhhcCCCCCEEEecCCCCC
Confidence            799999999999998887  7899999999999999863

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=99.58  E-value=2e-14  Score=85.96  Aligned_cols=104  Identities=20%  Similarity=0.262  Sum_probs=83.7

Q ss_pred             cccEEEcCCCcccccCcccccCCCcccEEEccCCccccccchhhhccCCCCEEEccCCcCcCCCChHhhhcCccceEEEe
Q 039528            6 NLFELNLKGNNVEGHLPNCLKYLSHLKVFDISQNQLSGSLSSTITSLTSLEYLDLSYNNFEGPCPLSLLAHHSKLEVLVL   85 (136)
Q Consensus         6 ~L~~l~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~~l~~l~l   85 (136)
                      ..+.++++++.++ .+|..+  .+.+++|++++|.+++..+..+..+++|++|++++|+++ .++...+..+++|+++++
T Consensus        10 ~~~~l~~s~n~l~-~ip~~~--~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~-~l~~~~f~~l~~L~~L~L   85 (170)
T 3g39_A           10 SGTTVDCSGKSLA-SVPTGI--PTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLT-VLPAGVFDKLTQLTQLSL   85 (170)
T ss_dssp             ETTEEECTTSCCS-SCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCC-CCCTTTTTTCTTCCEEEC
T ss_pred             CCCEEEeCCCCcC-ccCccC--CCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcC-ccChhhccCCCCCCEEEC
Confidence            3578899999988 466544  378899999999998777888889999999999999998 455555778889999999


Q ss_pred             ccceeeecc--CCCCCccccEEEcCCCCCC
Q 039528           86 SSTILVKTE--NFLPTFQLKELGLANCSLN  113 (136)
Q Consensus        86 ~~~~~~~~~--~~~~~~~L~~l~l~~n~~~  113 (136)
                      ++|.+...+  .+..+.+|+.|++++|.+.
T Consensus        86 ~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~  115 (170)
T 3g39_A           86 NDNQLKSIPRGAFDNLKSLTHIWLLNNPWD  115 (170)
T ss_dssp             CSSCCCCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred             CCCccCEeCHHHhcCCCCCCEEEeCCCCCC
Confidence            998876664  3567778899999988883

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=99.58  E-value=1.9e-14  Score=100.37  Aligned_cols=103  Identities=29%  Similarity=0.309  Sum_probs=92.9

Q ss_pred             cccEEEccCCccccccchhhhccCCCCEEEccCCcCcCCCChHhhhcCccceEEEeccceeeeccCCCCCccccEEEcCC
Q 039528           30 HLKVFDISQNQLSGSLSSTITSLTSLEYLDLSYNNFEGPCPLSLLAHHSKLEVLVLSSTILVKTENFLPTFQLKELGLAN  109 (136)
Q Consensus        30 ~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~L~~l~l~~  109 (136)
                      .|+.|++++|.+++ +|. +..+++|+.|++++|.++ .+|. .+..+++|+.|++++|.+...+.+..+++|+.|++++
T Consensus       442 ~L~~L~Ls~n~l~~-lp~-~~~l~~L~~L~Ls~N~l~-~lp~-~~~~l~~L~~L~Ls~N~l~~lp~l~~l~~L~~L~Ls~  517 (567)
T 1dce_A          442 DVRVLHLAHKDLTV-LCH-LEQLLLVTHLDLSHNRLR-ALPP-ALAALRCLEVLQASDNALENVDGVANLPRLQELLLCN  517 (567)
T ss_dssp             TCSEEECTTSCCSS-CCC-GGGGTTCCEEECCSSCCC-CCCG-GGGGCTTCCEEECCSSCCCCCGGGTTCSSCCEEECCS
T ss_pred             CceEEEecCCCCCC-CcC-ccccccCcEeecCccccc-ccch-hhhcCCCCCEEECCCCCCCCCcccCCCCCCcEEECCC
Confidence            58899999999985 565 899999999999999998 7785 4889999999999999988887778888999999999


Q ss_pred             CCCCCC--ChhhhcCCCCcEEEcCCCcCC
Q 039528          110 CSLNVV--PTFLLHQYDLKYLDLSHNNLV  136 (136)
Q Consensus       110 n~~~~~--~~~~~~~~~L~~l~l~~n~l~  136 (136)
                      |.++.+  |..++.+++|+.|++++|.++
T Consensus       518 N~l~~~~~p~~l~~l~~L~~L~L~~N~l~  546 (567)
T 1dce_A          518 NRLQQSAAIQPLVSCPRLVLLNLQGNSLC  546 (567)
T ss_dssp             SCCCSSSTTGGGGGCTTCCEEECTTSGGG
T ss_pred             CCCCCCCCcHHHhcCCCCCEEEecCCcCC
Confidence            999776  889999999999999999874

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=99.58  E-value=3.1e-14  Score=96.93  Aligned_cols=119  Identities=27%  Similarity=0.324  Sum_probs=77.7

Q ss_pred             CcccEEEcCCCcccccCcccccCCCcccEEEccCCccccccchhhhccCCCCEEEccCCcCcCCCChHhhhcCccceEEE
Q 039528            5 KNLFELNLKGNNVEGHLPNCLKYLSHLKVFDISQNQLSGSLSSTITSLTSLEYLDLSYNNFEGPCPLSLLAHHSKLEVLV   84 (136)
Q Consensus         5 ~~L~~l~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~~l~~l~   84 (136)
                      ++|++|++++|.+++ +| .+..+++|++|++++|.+++ +|..   ..+|++|++++|.+++ +| + +..+++|++++
T Consensus       131 ~~L~~L~L~~n~l~~-lp-~~~~l~~L~~L~l~~N~l~~-lp~~---~~~L~~L~L~~n~l~~-l~-~-~~~l~~L~~L~  201 (454)
T 1jl5_A          131 PLLEYLGVSNNQLEK-LP-ELQNSSFLKIIDVDNNSLKK-LPDL---PPSLEFIAAGNNQLEE-LP-E-LQNLPFLTAIY  201 (454)
T ss_dssp             TTCCEEECCSSCCSS-CC-CCTTCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCSS-CC-C-CTTCTTCCEEE
T ss_pred             CCCCEEECcCCCCCC-Cc-ccCCCCCCCEEECCCCcCcc-cCCC---cccccEEECcCCcCCc-Cc-c-ccCCCCCCEEE
Confidence            467777777777774 55 46777777777777777763 3332   2467777777777764 44 2 66677777777


Q ss_pred             eccceeeeccCCCCCccccEEEcCCCCCCCCChhhhcCCCCcEEEcCCCcC
Q 039528           85 LSSTILVKTENFLPTFQLKELGLANCSLNVVPTFLLHQYDLKYLDLSHNNL  135 (136)
Q Consensus        85 l~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~L~~l~l~~n~l  135 (136)
                      +++|.+...+..  ..+|++|++++|.++.+|. ++.+++|++|++++|.+
T Consensus       202 l~~N~l~~l~~~--~~~L~~L~l~~n~l~~lp~-~~~l~~L~~L~l~~N~l  249 (454)
T 1jl5_A          202 ADNNSLKKLPDL--PLSLESIVAGNNILEELPE-LQNLPFLTTIYADNNLL  249 (454)
T ss_dssp             CCSSCCSSCCCC--CTTCCEEECCSSCCSSCCC-CTTCTTCCEEECCSSCC
T ss_pred             CCCCcCCcCCCC--cCcccEEECcCCcCCcccc-cCCCCCCCEEECCCCcC
Confidence            777766554332  2367777777777766663 66677777777777655

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=99.58  E-value=1.1e-14  Score=96.03  Aligned_cols=131  Identities=19%  Similarity=0.200  Sum_probs=71.7

Q ss_pred             cccEEEcCCCcccccCcccccCCCcccEEEccCCcc--------------------------ccccchhhhccCCCCEEE
Q 039528            6 NLFELNLKGNNVEGHLPNCLKYLSHLKVFDISQNQL--------------------------SGSLSSTITSLTSLEYLD   59 (136)
Q Consensus         6 ~L~~l~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~--------------------------~~~~~~~~~~~~~l~~l~   59 (136)
                      ++++|++++|.++...+..|.++++|++|++++|.+                          +...++.|..+++|++++
T Consensus        31 ~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~l~~l~~~~f~~l~~L~~L~  110 (350)
T 4ay9_X           31 NAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLL  110 (350)
T ss_dssp             TCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETTCCEECTTSBCCCTTCCEEE
T ss_pred             CCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCCcccccCchhhhhcccccccc
Confidence            345555555555533334455555555555555543                          333344455566777777


Q ss_pred             ccCCcCcCCCCh------------------------HhhhcC-ccceEEEeccceeeecc-CCCCCccccEEEcCC-CCC
Q 039528           60 LSYNNFEGPCPL------------------------SLLAHH-SKLEVLVLSSTILVKTE-NFLPTFQLKELGLAN-CSL  112 (136)
Q Consensus        60 l~~~~~~~~~~~------------------------~~~~~~-~~l~~l~l~~~~~~~~~-~~~~~~~L~~l~l~~-n~~  112 (136)
                      +++|.+....+.                        ..+..+ ..++.+++++|.+...+ ......+++.+++.+ |.+
T Consensus       111 l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~~i~~~~f~~~~L~~l~l~~~n~l  190 (350)
T 4ay9_X          111 ISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNSAFNGTQLDELNLSDNNNL  190 (350)
T ss_dssp             EEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCCEECTTSSTTEEEEEEECTTCTTC
T ss_pred             ccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhccccccccCCChhhccccchhHHhhccCCcc
Confidence            776666422111                        111111 13455555555554443 223344667777754 555


Q ss_pred             CCCCh-hhhcCCCCcEEEcCCCcCC
Q 039528          113 NVVPT-FLLHQYDLKYLDLSHNNLV  136 (136)
Q Consensus       113 ~~~~~-~~~~~~~L~~l~l~~n~l~  136 (136)
                      +.+|. ++..+++|+.|++++|.++
T Consensus       191 ~~i~~~~f~~l~~L~~LdLs~N~l~  215 (350)
T 4ay9_X          191 EELPNDVFHGASGPVILDISRTRIH  215 (350)
T ss_dssp             CCCCTTTTTTEECCSEEECTTSCCC
T ss_pred             cCCCHHHhccCcccchhhcCCCCcC
Confidence            77775 5678889999999998874

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=99.57  E-value=2.2e-15  Score=102.31  Aligned_cols=133  Identities=26%  Similarity=0.286  Sum_probs=91.0

Q ss_pred             CCcccEEEcCCCccccc----CcccccCCCcccEEEccCCccccccchhhhc-----cCCCCEEEccCCcCcCCCC---h
Q 039528            4 LKNLFELNLKGNNVEGH----LPNCLKYLSHLKVFDISQNQLSGSLSSTITS-----LTSLEYLDLSYNNFEGPCP---L   71 (136)
Q Consensus         4 l~~L~~l~l~~~~l~~~----~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~-----~~~l~~l~l~~~~~~~~~~---~   71 (136)
                      +++|++|++++|.+++.    ++..+..+++|++|++++|.+.+..+..+..     .++|++|++++|.+++...   .
T Consensus       255 ~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~  334 (461)
T 1z7x_W          255 SSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFS  334 (461)
T ss_dssp             TCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHH
T ss_pred             CCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCCchHHHHHHHHHhccCCccceeeEcCCCCCchHHHHHHH
Confidence            56667777777766643    3445556777777777777665433333322     2577778887777764311   1


Q ss_pred             HhhhcCccceEEEeccceeeecc--C----C-CCCccccEEEcCCCCCC-----CCChhhhcCCCCcEEEcCCCcCC
Q 039528           72 SLLAHHSKLEVLVLSSTILVKTE--N----F-LPTFQLKELGLANCSLN-----VVPTFLLHQYDLKYLDLSHNNLV  136 (136)
Q Consensus        72 ~~~~~~~~l~~l~l~~~~~~~~~--~----~-~~~~~L~~l~l~~n~~~-----~~~~~~~~~~~L~~l~l~~n~l~  136 (136)
                      ..+..+++|+++++++|.+.+..  .    + ...++|+.|++++|.++     .++..+..+++|++|++++|.++
T Consensus       335 ~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~N~i~  411 (461)
T 1z7x_W          335 SVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLG  411 (461)
T ss_dssp             HHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCCCCCEEECCSSSCC
T ss_pred             HHHhhCCCccEEEccCCccccccHHHHHHHHcCCCCceEEEECCCCCCChhhHHHHHHHHHhCCCccEEECCCCCCC
Confidence            23556789999999998776543  1    1 12568999999999996     67788888999999999999874

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=99.56  E-value=4e-14  Score=84.63  Aligned_cols=103  Identities=23%  Similarity=0.197  Sum_probs=86.7

Q ss_pred             cccEEEccCCccccccchhhhccCCCCEEEccCCcCcCCCChHhhhcCccceEEEeccceeeecc--CCCCCccccEEEc
Q 039528           30 HLKVFDISQNQLSGSLSSTITSLTSLEYLDLSYNNFEGPCPLSLLAHHSKLEVLVLSSTILVKTE--NFLPTFQLKELGL  107 (136)
Q Consensus        30 ~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~--~~~~~~~L~~l~l  107 (136)
                      ..+.++++++.++ .+|..+  ...+++|++++|.+++..+ ..+..+++|+++++++|.+...+  .+..+++|++|++
T Consensus        10 ~~~~l~~s~n~l~-~ip~~~--~~~l~~L~L~~N~i~~~~~-~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L   85 (170)
T 3g39_A           10 SGTTVDCSGKSLA-SVPTGI--PTTTQVLYLYDNQITKLEP-GVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSL   85 (170)
T ss_dssp             ETTEEECTTSCCS-SCCSCC--CTTCSEEECCSSCCCCCCT-TTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred             CCCEEEeCCCCcC-ccCccC--CCCCcEEEcCCCcCCccCh-hhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEEC
Confidence            4678999999998 466554  3789999999999985444 55889999999999999987765  3567889999999


Q ss_pred             CCCCCCCCCh-hhhcCCCCcEEEcCCCcCC
Q 039528          108 ANCSLNVVPT-FLLHQYDLKYLDLSHNNLV  136 (136)
Q Consensus       108 ~~n~~~~~~~-~~~~~~~L~~l~l~~n~l~  136 (136)
                      ++|.++.++. .+..+++|+.|++++|+++
T Consensus        86 ~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~  115 (170)
T 3g39_A           86 NDNQLKSIPRGAFDNLKSLTHIWLLNNPWD  115 (170)
T ss_dssp             CSSCCCCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred             CCCccCEeCHHHhcCCCCCCEEEeCCCCCC
Confidence            9999987776 6889999999999999864

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=99.56  E-value=4.8e-14  Score=84.63  Aligned_cols=102  Identities=23%  Similarity=0.243  Sum_probs=86.3

Q ss_pred             ccEEEccCCccccccchhhhccCCCCEEEccCCcCcCCCChHhhhcCccceEEEeccceeeeccC--CCCCccccEEEcC
Q 039528           31 LKVFDISQNQLSGSLSSTITSLTSLEYLDLSYNNFEGPCPLSLLAHHSKLEVLVLSSTILVKTEN--FLPTFQLKELGLA  108 (136)
Q Consensus        31 L~~L~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~--~~~~~~L~~l~l~  108 (136)
                      .+.++++++.++ .+|..+.  ..+++|++++|.+.+..+ ..+..+++|+.|++++|.+...+.  +..+++|+.|+++
T Consensus        14 ~~~l~~~~n~l~-~iP~~~~--~~L~~L~Ls~N~l~~~~~-~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~   89 (174)
T 2r9u_A           14 QTLVNCQNIRLA-SVPAGIP--TDKQRLWLNNNQITKLEP-GVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLN   89 (174)
T ss_dssp             SSEEECCSSCCS-SCCSCCC--TTCSEEECCSSCCCCCCT-TTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred             CcEEEeCCCCCC-ccCCCcC--CCCcEEEeCCCCccccCH-HHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECC
Confidence            478899999987 5666553  889999999999985444 558899999999999999877753  5678899999999


Q ss_pred             CCCCCCCCh-hhhcCCCCcEEEcCCCcCC
Q 039528          109 NCSLNVVPT-FLLHQYDLKYLDLSHNNLV  136 (136)
Q Consensus       109 ~n~~~~~~~-~~~~~~~L~~l~l~~n~l~  136 (136)
                      +|.++.+|. .+..+++|+.|++++|++.
T Consensus        90 ~N~l~~l~~~~~~~l~~L~~L~L~~N~~~  118 (174)
T 2r9u_A           90 DNHLKSIPRGAFDNLKSLTHIYLYNNPWD  118 (174)
T ss_dssp             SSCCCCCCTTTTTTCTTCSEEECCSSCBC
T ss_pred             CCccceeCHHHhccccCCCEEEeCCCCcc
Confidence            999988886 5889999999999999874

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=99.54  E-value=1.3e-13  Score=93.89  Aligned_cols=104  Identities=21%  Similarity=0.232  Sum_probs=57.0

Q ss_pred             CCCCcccEEEcCCCcccccCcccccCCCcccEEEccCCccccccchhhhccCCCCEEEccCCcCcCCCChHhhhcCccce
Q 039528            2 CELKNLFELNLKGNNVEGHLPNCLKYLSHLKVFDISQNQLSGSLSSTITSLTSLEYLDLSYNNFEGPCPLSLLAHHSKLE   81 (136)
Q Consensus         2 ~~l~~L~~l~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~~l~   81 (136)
                      .++++|+++++++|.+++ +|..   .++|++|++++|.+++ .| .+..+++|+++++++|.+.+ +|.    ..++|+
T Consensus       150 ~~l~~L~~L~l~~N~l~~-lp~~---~~~L~~L~L~~n~l~~-l~-~~~~l~~L~~L~l~~N~l~~-l~~----~~~~L~  218 (454)
T 1jl5_A          150 QNSSFLKIIDVDNNSLKK-LPDL---PPSLEFIAAGNNQLEE-LP-ELQNLPFLTAIYADNNSLKK-LPD----LPLSLE  218 (454)
T ss_dssp             TTCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCSS-CC-CCTTCTTCCEEECCSSCCSS-CCC----CCTTCC
T ss_pred             CCCCCCCEEECCCCcCcc-cCCC---cccccEEECcCCcCCc-Cc-cccCCCCCCEEECCCCcCCc-CCC----CcCccc
Confidence            456777888888877774 4432   2467777777776664 33 45666666666666666653 221    113455


Q ss_pred             EEEeccceeeeccCCCCCccccEEEcCCCCCCCCC
Q 039528           82 VLVLSSTILVKTENFLPTFQLKELGLANCSLNVVP  116 (136)
Q Consensus        82 ~l~l~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~  116 (136)
                      ++++++|.+...+.+..+++|++|++++|.++.+|
T Consensus       219 ~L~l~~n~l~~lp~~~~l~~L~~L~l~~N~l~~l~  253 (454)
T 1jl5_A          219 SIVAGNNILEELPELQNLPFLTTIYADNNLLKTLP  253 (454)
T ss_dssp             EEECCSSCCSSCCCCTTCTTCCEEECCSSCCSSCC
T ss_pred             EEECcCCcCCcccccCCCCCCCEEECCCCcCCccc
Confidence            55555554444333444444455555444443333

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=99.50  E-value=3.9e-14  Score=96.19  Aligned_cols=129  Identities=22%  Similarity=0.263  Sum_probs=80.4

Q ss_pred             cccEEEcCCCcccccC----cccccCCCcccEEEccCCccccccchhhh-----ccCCCCEEEccCCcCcCC----CChH
Q 039528            6 NLFELNLKGNNVEGHL----PNCLKYLSHLKVFDISQNQLSGSLSSTIT-----SLTSLEYLDLSYNNFEGP----CPLS   72 (136)
Q Consensus         6 ~L~~l~l~~~~l~~~~----~~~~~~l~~L~~L~l~~~~~~~~~~~~~~-----~~~~l~~l~l~~~~~~~~----~~~~   72 (136)
                      +|++|++++|.+++..    +..+..+++|++|++++|.+....+..+.     ..++|++|++++|.++..    ++ .
T Consensus       143 ~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~-~  221 (461)
T 1z7x_W          143 RLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLC-G  221 (461)
T ss_dssp             CCCEEECTTSCCBGGGHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHH-H
T ss_pred             cceEEECCCCCCCHHHHHHHHHHHhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHH-H
Confidence            4555555555555422    33344556666666666665533333222     245677777777776532    12 2


Q ss_pred             hhhcCccceEEEeccceeeecc-------CCCCCccccEEEcCCCCCCC-----CChhhhcCCCCcEEEcCCCcC
Q 039528           73 LLAHHSKLEVLVLSSTILVKTE-------NFLPTFQLKELGLANCSLNV-----VPTFLLHQYDLKYLDLSHNNL  135 (136)
Q Consensus        73 ~~~~~~~l~~l~l~~~~~~~~~-------~~~~~~~L~~l~l~~n~~~~-----~~~~~~~~~~L~~l~l~~n~l  135 (136)
                      .+..+++|+++++++|.+.+..       .....++|++|++++|.++.     ++..+..+++|++|++++|.+
T Consensus       222 ~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i  296 (461)
T 1z7x_W          222 IVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNEL  296 (461)
T ss_dssp             HHHHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCC
T ss_pred             HHHhCCCccEEeccCCcCChHHHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCC
Confidence            3556788888888887765432       11245688888888888865     666777788888888888875

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=99.47  E-value=2e-14  Score=95.59  Aligned_cols=132  Identities=20%  Similarity=0.164  Sum_probs=93.5

Q ss_pred             CcccEEEcCCCcccccCcccc-cCCCcccEEEccCCccccccchhh-----hccCCCCEEEccCCcCcCCCC---hHhhh
Q 039528            5 KNLFELNLKGNNVEGHLPNCL-KYLSHLKVFDISQNQLSGSLSSTI-----TSLTSLEYLDLSYNNFEGPCP---LSLLA   75 (136)
Q Consensus         5 ~~L~~l~l~~~~l~~~~~~~~-~~l~~L~~L~l~~~~~~~~~~~~~-----~~~~~l~~l~l~~~~~~~~~~---~~~~~   75 (136)
                      ++|++|++++|.+++.....+ ..+++|+.|++++|.++......+     ...++|++|++++|.++....   ...+.
T Consensus       101 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~  180 (372)
T 3un9_A          101 HALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLLLHDQCQITTLRLSNNPLTAAGVAVLMEGLA  180 (372)
T ss_dssp             SCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHHHSTTCCCCEEECCSSCCHHHHHHHHHHHHH
T ss_pred             CCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHHHhcCCccceeeCCCCCCChHHHHHHHHHHh
Confidence            578888888888865444333 345678888888888864433333     235789999999998863211   12245


Q ss_pred             cCccceEEEeccceeeecc------CCCCCccccEEEcCCCCCCC-----CChhhhcCCCCcEEEcCCCcCC
Q 039528           76 HHSKLEVLVLSSTILVKTE------NFLPTFQLKELGLANCSLNV-----VPTFLLHQYDLKYLDLSHNNLV  136 (136)
Q Consensus        76 ~~~~l~~l~l~~~~~~~~~------~~~~~~~L~~l~l~~n~~~~-----~~~~~~~~~~L~~l~l~~n~l~  136 (136)
                      .+++|+++++++|.+.+.+      .+...++|++|++++|.+++     +..++...+.|++|++++|.++
T Consensus       181 ~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~l~~~L~~~~~L~~L~Ls~N~i~  252 (372)
T 3un9_A          181 GNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALALARAAREHPSLELLHLYFNELS  252 (372)
T ss_dssp             TCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHHHHHHHHHCSSCCEEECTTSSCC
T ss_pred             cCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHHHHHHHHhCCCCCEEeccCCCCC
Confidence            6788999999999876643      33455689999999999954     3445667789999999999874

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=99.45  E-value=1.2e-12  Score=92.21  Aligned_cols=97  Identities=25%  Similarity=0.300  Sum_probs=50.8

Q ss_pred             cccEEEcCCCcccccCcccccCCCcccEEEccCCccccccchhhhccCCCCEEEccCCcCcCCCChHhhhcCccceEEEe
Q 039528            6 NLFELNLKGNNVEGHLPNCLKYLSHLKVFDISQNQLSGSLSSTITSLTSLEYLDLSYNNFEGPCPLSLLAHHSKLEVLVL   85 (136)
Q Consensus         6 ~L~~l~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~~l~~l~l   85 (136)
                      +|+.|++++|.++ .+|.   .+++|++|++++|.++. +|.   .+++|++|++++|.++ .++.    .+++|+.+++
T Consensus        62 ~L~~L~L~~N~l~-~lp~---~l~~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~l~-~l~~----~l~~L~~L~L  128 (622)
T 3g06_A           62 HITTLVIPDNNLT-SLPA---LPPELRTLEVSGNQLTS-LPV---LPPGLLELSIFSNPLT-HLPA----LPSGLCKLWI  128 (622)
T ss_dssp             TCSEEEECSCCCS-CCCC---CCTTCCEEEECSCCCSC-CCC---CCTTCCEEEECSCCCC-CCCC----CCTTCCEEEC
T ss_pred             CCcEEEecCCCCC-CCCC---cCCCCCEEEcCCCcCCc-CCC---CCCCCCEEECcCCcCC-CCCC----CCCCcCEEEC
Confidence            4555555555555 2333   34555566665555542 232   3455666666666555 2332    3455666666


Q ss_pred             ccceeeeccCCCCCccccEEEcCCCCCCCCCh
Q 039528           86 SSTILVKTENFLPTFQLKELGLANCSLNVVPT  117 (136)
Q Consensus        86 ~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~  117 (136)
                      ++|.+...+..  .++|++|++++|.++.+|.
T Consensus       129 ~~N~l~~lp~~--l~~L~~L~Ls~N~l~~l~~  158 (622)
T 3g06_A          129 FGNQLTSLPVL--PPGLQELSVSDNQLASLPA  158 (622)
T ss_dssp             CSSCCSCCCCC--CTTCCEEECCSSCCSCCCC
T ss_pred             CCCCCCcCCCC--CCCCCEEECcCCcCCCcCC
Confidence            66555444332  2466666776666654443

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=99.44  E-value=6.5e-13  Score=87.63  Aligned_cols=106  Identities=15%  Similarity=0.170  Sum_probs=75.6

Q ss_pred             cEEEcCCCcccccCcccccCCCcccEEEccCCccccccchhhhccCCCCEEEccCCcCcCCCChHhhhcCccceE-EEec
Q 039528            8 FELNLKGNNVEGHLPNCLKYLSHLKVFDISQNQLSGSLSSTITSLTSLEYLDLSYNNFEGPCPLSLLAHHSKLEV-LVLS   86 (136)
Q Consensus         8 ~~l~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~~l~~-l~l~   86 (136)
                      +.++.+++.++ .+|..+  .+++++|++++|.++.+.++.|..+++|++|++++|.+.+.++..++..++++.+ +.+.
T Consensus        12 ~~v~C~~~~Lt-~iP~~l--~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~   88 (350)
T 4ay9_X           12 RVFLCQESKVT-EIPSDL--PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEK   88 (350)
T ss_dssp             TEEEEESTTCC-SCCTTC--CTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEE
T ss_pred             CEEEecCCCCC-ccCcCc--CCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhccc
Confidence            56778888888 566654  3579999999999986656678999999999999999865666555667766654 4444


Q ss_pred             cceeeecc--CCCCCccccEEEcCCCCCCCCC
Q 039528           87 STILVKTE--NFLPTFQLKELGLANCSLNVVP  116 (136)
Q Consensus        87 ~~~~~~~~--~~~~~~~L~~l~l~~n~~~~~~  116 (136)
                      .|.+...+  .+..+++|+.|++++|.+..++
T Consensus        89 ~N~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~  120 (350)
T 4ay9_X           89 ANNLLYINPEAFQNLPNLQYLLISNTGIKHLP  120 (350)
T ss_dssp             ETTCCEECTTSBCCCTTCCEEEEEEECCSSCC
T ss_pred             CCcccccCchhhhhccccccccccccccccCC
Confidence            45554432  4556667777777777664443

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=99.42  E-value=1.7e-12  Score=85.37  Aligned_cols=103  Identities=19%  Similarity=0.186  Sum_probs=83.5

Q ss_pred             cEEEcCCC-cccccCcccccCCCcccEEEccC-CccccccchhhhccCCCCEEEccCCcCcCCCChHhhhcCccceEEEe
Q 039528            8 FELNLKGN-NVEGHLPNCLKYLSHLKVFDISQ-NQLSGSLSSTITSLTSLEYLDLSYNNFEGPCPLSLLAHHSKLEVLVL   85 (136)
Q Consensus         8 ~~l~l~~~-~l~~~~~~~~~~l~~L~~L~l~~-~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~~l~~l~l   85 (136)
                      ..++.+++ .++ .+|. +..+.+|++|++++ |.+++..+..|..+++|+.|++++|++++..+ ..+..+++|+.|++
T Consensus        11 ~~v~~~~~n~l~-~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~-~~~~~l~~L~~L~l   87 (347)
T 2ifg_A           11 SGLRCTRDGALD-SLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAP-DAFHFTPRLSRLNL   87 (347)
T ss_dssp             SCEECCSSCCCT-TTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECT-TGGGSCSCCCEEEC
T ss_pred             CEEEcCCCCCCC-ccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCH-HHhcCCcCCCEEeC
Confidence            35688887 888 5777 89999999999996 99987777889999999999999999985444 55888999999999


Q ss_pred             ccceeeeccC-CCCCccccEEEcCCCCCC
Q 039528           86 SSTILVKTEN-FLPTFQLKELGLANCSLN  113 (136)
Q Consensus        86 ~~~~~~~~~~-~~~~~~L~~l~l~~n~~~  113 (136)
                      ++|.+...+. ......|+.|++.+|.+.
T Consensus        88 ~~N~l~~~~~~~~~~~~L~~l~l~~N~~~  116 (347)
T 2ifg_A           88 SFNALESLSWKTVQGLSLQELVLSGNPLH  116 (347)
T ss_dssp             CSSCCSCCCSTTTCSCCCCEEECCSSCCC
T ss_pred             CCCccceeCHHHcccCCceEEEeeCCCcc
Confidence            9998876652 222234999999999984

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=99.40  E-value=1.2e-12  Score=86.11  Aligned_cols=88  Identities=25%  Similarity=0.243  Sum_probs=76.9

Q ss_pred             CCCCcccEEEcCC-CcccccCcccccCCCcccEEEccCCccccccchhhhccCCCCEEEccCCcCcCCCChHhhhcCccc
Q 039528            2 CELKNLFELNLKG-NNVEGHLPNCLKYLSHLKVFDISQNQLSGSLSSTITSLTSLEYLDLSYNNFEGPCPLSLLAHHSKL   80 (136)
Q Consensus         2 ~~l~~L~~l~l~~-~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~~l   80 (136)
                      ..+++|+.|++++ |.+++..+..|.++++|++|++++|.+++..+..|..+++|++|++++|+++ .+|...+..++ |
T Consensus        28 ~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~-~~~~~~~~~~~-L  105 (347)
T 2ifg_A           28 PGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALE-SLSWKTVQGLS-L  105 (347)
T ss_dssp             CSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSCCS-CCCSTTTCSCC-C
T ss_pred             CCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCCccc-eeCHHHcccCC-c
Confidence            4567899999996 9999877789999999999999999999888889999999999999999998 45655565555 9


Q ss_pred             eEEEeccceee
Q 039528           81 EVLVLSSTILV   91 (136)
Q Consensus        81 ~~l~l~~~~~~   91 (136)
                      +.|++.+|.+.
T Consensus       106 ~~l~l~~N~~~  116 (347)
T 2ifg_A          106 QELVLSGNPLH  116 (347)
T ss_dssp             CEEECCSSCCC
T ss_pred             eEEEeeCCCcc
Confidence            99999998764

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=99.39  E-value=2e-12  Score=84.67  Aligned_cols=81  Identities=21%  Similarity=0.237  Sum_probs=52.6

Q ss_pred             cCCCCEEEccCCcCcCCCChHhhhcCccceEEEeccceeeec--cCCCCCcccc-EEEcCCCCCCCCC-hhhhcCCCCcE
Q 039528           52 LTSLEYLDLSYNNFEGPCPLSLLAHHSKLEVLVLSSTILVKT--ENFLPTFQLK-ELGLANCSLNVVP-TFLLHQYDLKY  127 (136)
Q Consensus        52 ~~~l~~l~l~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~--~~~~~~~~L~-~l~l~~n~~~~~~-~~~~~~~~L~~  127 (136)
                      +++|+.+++++|.++ .++..+|..+.+|+.+++..| +..+  .++..+.+|+ .+.+.. .++.++ .+|..|++|+.
T Consensus       225 ~~~L~~l~L~~n~i~-~I~~~aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~  301 (329)
T 3sb4_A          225 MPNLVSLDISKTNAT-TIPDFTFAQKKYLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRY  301 (329)
T ss_dssp             CTTCCEEECTTBCCC-EECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEE
T ss_pred             cCCCeEEECCCCCcc-eecHhhhhCCCCCCEEECCcc-cceehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccCCE
Confidence            566777777777665 556566777777777777776 3223  2556666677 777766 565554 46677777777


Q ss_pred             EEcCCCcC
Q 039528          128 LDLSHNNL  135 (136)
Q Consensus       128 l~l~~n~l  135 (136)
                      +++++|.+
T Consensus       302 l~l~~n~i  309 (329)
T 3sb4_A          302 VLATGDKI  309 (329)
T ss_dssp             EEECSSCC
T ss_pred             EEeCCCcc
Confidence            77766554

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=99.38  E-value=8.8e-12  Score=81.57  Aligned_cols=101  Identities=14%  Similarity=0.160  Sum_probs=84.5

Q ss_pred             CCcccEEEccCCccccccchhhhccCCCCEEEccCCcCcCCCChHhhhcCccce-EEEecccee-eeccCCCCCccccEE
Q 039528           28 LSHLKVFDISQNQLSGSLSSTITSLTSLEYLDLSYNNFEGPCPLSLLAHHSKLE-VLVLSSTIL-VKTENFLPTFQLKEL  105 (136)
Q Consensus        28 l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~~l~-~l~l~~~~~-~~~~~~~~~~~L~~l  105 (136)
                      +++|+.+++++|.++.+....|..+.+|+.+++.+| +. .++..+|..+++|+ .+++..+.. ....++..+.+|+.+
T Consensus       225 ~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n-i~-~I~~~aF~~~~~L~~~l~l~~~l~~I~~~aF~~c~~L~~l  302 (329)
T 3sb4_A          225 MPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN-LK-TIGQRVFSNCGRLAGTLELPASVTAIEFGAFMGCDNLRYV  302 (329)
T ss_dssp             CTTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT-CC-EECTTTTTTCTTCCEEEEECTTCCEECTTTTTTCTTEEEE
T ss_pred             cCCCeEEECCCCCcceecHhhhhCCCCCCEEECCcc-cc-eehHHHhhCChhccEEEEEcccceEEchhhhhCCccCCEE
Confidence            678899999988888677778999999999999987 55 57777899999999 999988432 223478888899999


Q ss_pred             EcCCCCCCCCCh-hhhcCCCCcEEEc
Q 039528          106 GLANCSLNVVPT-FLLHQYDLKYLDL  130 (136)
Q Consensus       106 ~l~~n~~~~~~~-~~~~~~~L~~l~l  130 (136)
                      ++..|.+..++. ++..+++|+.++.
T Consensus       303 ~l~~n~i~~I~~~aF~~~~~L~~ly~  328 (329)
T 3sb4_A          303 LATGDKITTLGDELFGNGVPSKLIYK  328 (329)
T ss_dssp             EECSSCCCEECTTTTCTTCCCCEEEC
T ss_pred             EeCCCccCccchhhhcCCcchhhhcc
Confidence            999999988775 8899999998864

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=99.35  E-value=1.4e-13  Score=91.57  Aligned_cols=132  Identities=19%  Similarity=0.177  Sum_probs=97.8

Q ss_pred             CcccEEEcCCCcccccCcccccC-----CCcccEEEccCCccccccchhh-hccCCCCEEEccCCcCcCCCChHh---h-
Q 039528            5 KNLFELNLKGNNVEGHLPNCLKY-----LSHLKVFDISQNQLSGSLSSTI-TSLTSLEYLDLSYNNFEGPCPLSL---L-   74 (136)
Q Consensus         5 ~~L~~l~l~~~~l~~~~~~~~~~-----l~~L~~L~l~~~~~~~~~~~~~-~~~~~l~~l~l~~~~~~~~~~~~~---~-   74 (136)
                      +.++.+++++|.++......+..     .+.|++|++++|.++......+ ..+.+++.|++++|.+........   + 
T Consensus        72 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L~  151 (372)
T 3un9_A           72 SSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLLL  151 (372)
T ss_dssp             TTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHHH
T ss_pred             hhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHHH
Confidence            56899999999998654444433     3799999999999875433333 346789999999999963322221   1 


Q ss_pred             hcCccceEEEeccceeeecc------CCCCCccccEEEcCCCCCCC-----CChhhhcCCCCcEEEcCCCcCC
Q 039528           75 AHHSKLEVLVLSSTILVKTE------NFLPTFQLKELGLANCSLNV-----VPTFLLHQYDLKYLDLSHNNLV  136 (136)
Q Consensus        75 ~~~~~l~~l~l~~~~~~~~~------~~~~~~~L~~l~l~~n~~~~-----~~~~~~~~~~L~~l~l~~n~l~  136 (136)
                      ...+.|+++++++|.+.+.+      .+...++|++|++++|.+++     +...+...++|+.|++++|.++
T Consensus       152 ~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~  224 (372)
T 3un9_A          152 HDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAG  224 (372)
T ss_dssp             STTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCC
T ss_pred             hcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCC
Confidence            24578999999999886643      22456789999999999943     3456778889999999999874

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=99.32  E-value=4.5e-13  Score=93.51  Aligned_cols=133  Identities=10%  Similarity=0.091  Sum_probs=70.2

Q ss_pred             CCcccEEEcCCCcccccCcccccC-CCcccEEEcc----CCccccc-----cchhhhccCCCCEEEccCCc--CcCCCCh
Q 039528            4 LKNLFELNLKGNNVEGHLPNCLKY-LSHLKVFDIS----QNQLSGS-----LSSTITSLTSLEYLDLSYNN--FEGPCPL   71 (136)
Q Consensus         4 l~~L~~l~l~~~~l~~~~~~~~~~-l~~L~~L~l~----~~~~~~~-----~~~~~~~~~~l~~l~l~~~~--~~~~~~~   71 (136)
                      +++|+.|+++.+.+++..+..+.. +++|+.|+++    .+.+++.     .+..+..+++|++|+++.+.  +++....
T Consensus       377 ~~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~  456 (592)
T 3ogk_B          377 CQELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLS  456 (592)
T ss_dssp             CTTCSEEEEEESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSCCCHHHHHHHHHHCTTCCEEEEECCGGGCCHHHHH
T ss_pred             CccCeEEEeecCCccHHHHHHHHhhCCCCcEEEEeecCCCccccCchHHHHHHHHHHhCCCCCEEEEecCCCCccHHHHH
Confidence            344555555444444433333332 5555555554    2333321     12223445566666664322  3222222


Q ss_pred             HhhhcCccceEEEeccceeeecc---CCCCCccccEEEcCCCCCCC--CChhhhcCCCCcEEEcCCCcCC
Q 039528           72 SLLAHHSKLEVLVLSSTILVKTE---NFLPTFQLKELGLANCSLNV--VPTFLLHQYDLKYLDLSHNNLV  136 (136)
Q Consensus        72 ~~~~~~~~l~~l~l~~~~~~~~~---~~~~~~~L~~l~l~~n~~~~--~~~~~~~~~~L~~l~l~~n~l~  136 (136)
                      .....+++|+.+++++|.+.+..   ....+++|+.|++++|.++.  ++..+..+++|+.|++++|.++
T Consensus       457 ~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~ls~n~it  526 (592)
T 3ogk_B          457 YIGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCFSERAIAAAVTKLPSLRYLWVQGYRAS  526 (592)
T ss_dssp             HHHHSCTTCCEEEECSCCSSHHHHHHHHTCCTTCCEEEEESCCCBHHHHHHHHHHCSSCCEEEEESCBCC
T ss_pred             HHHHhCccceEeeccCCCCCHHHHHHHHhcCcccCeeeccCCCCcHHHHHHHHHhcCccCeeECcCCcCC
Confidence            22334666777777776654422   12455678888888888732  4445567788888888887764

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=99.26  E-value=2.3e-11  Score=84.98  Aligned_cols=131  Identities=16%  Similarity=0.148  Sum_probs=79.4

Q ss_pred             CCCcccEEEcCCCccccc----CcccccCCCcccEEEccCCcccc----ccchhhhccCCCCEEEccCCcCcCCCChHhh
Q 039528            3 ELKNLFELNLKGNNVEGH----LPNCLKYLSHLKVFDISQNQLSG----SLSSTITSLTSLEYLDLSYNNFEGPCPLSLL   74 (136)
Q Consensus         3 ~l~~L~~l~l~~~~l~~~----~~~~~~~l~~L~~L~l~~~~~~~----~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~   74 (136)
                      .+++|++|++++|.+++.    ++..+..+++|++|++++|.+++    .++..+..+++|+.|+++++.+.+ ++ ..+
T Consensus       162 ~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~-l~-~~~  239 (592)
T 3ogk_B          162 HCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILE-LV-GFF  239 (592)
T ss_dssp             HCTTCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBGGG-GH-HHH
T ss_pred             hCCCCCEEECccccccCcchhHHHHHHhcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccHHH-HH-HHH
Confidence            357788888888877654    22344567788888888777652    233445567888888888877763 44 446


Q ss_pred             hcCccceEEEeccceee-e-c---cCCCCCccccEEEcCCCCCCCCChhhhcCCCCcEEEcCCCcC
Q 039528           75 AHHSKLEVLVLSSTILV-K-T---ENFLPTFQLKELGLANCSLNVVPTFLLHQYDLKYLDLSHNNL  135 (136)
Q Consensus        75 ~~~~~l~~l~l~~~~~~-~-~---~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~L~~l~l~~n~l  135 (136)
                      ..+++|++++++..... . .   .....+.+|+.+++.++....+|..+..+++|++|++++|.+
T Consensus       240 ~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~Ls~~~l  305 (592)
T 3ogk_B          240 KAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGPNEMPILFPFAAQIRKLDLLYALL  305 (592)
T ss_dssp             HHCTTCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTCCTTTGGGGGGGGGGCCEEEETTCCC
T ss_pred             hhhhHHHhhcccccccccchHHHHHHhhccccccccCccccchhHHHHHHhhcCCCcEEecCCCcC
Confidence            67778888887642111 0 0   122334455666655544455555555566666666665543

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=99.09  E-value=5.1e-11  Score=72.08  Aligned_cols=114  Identities=11%  Similarity=0.146  Sum_probs=80.1

Q ss_pred             cccccCCCcccEEEccCC-ccccc----cchhhhccCCCCEEEccCCcCcCCCC---hHhhhcCccceEEEeccceeeec
Q 039528           22 PNCLKYLSHLKVFDISQN-QLSGS----LSSTITSLTSLEYLDLSYNNFEGPCP---LSLLAHHSKLEVLVLSSTILVKT   93 (136)
Q Consensus        22 ~~~~~~l~~L~~L~l~~~-~~~~~----~~~~~~~~~~l~~l~l~~~~~~~~~~---~~~~~~~~~l~~l~l~~~~~~~~   93 (136)
                      ...+...+.|++|++++| .+...    +...+...++|++|++++|.+.....   ...+...+.|++|++++|.+.+.
T Consensus        29 ~~~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~  108 (185)
T 1io0_A           29 KRIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGS  108 (185)
T ss_dssp             HHHHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHH
T ss_pred             HHHHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHH
Confidence            345566788888888888 77532    33445556788888888888853211   12344567888899988887665


Q ss_pred             c------CCCCCccccEEEc--CCCCCCC-----CChhhhcCCCCcEEEcCCCcC
Q 039528           94 E------NFLPTFQLKELGL--ANCSLNV-----VPTFLLHQYDLKYLDLSHNNL  135 (136)
Q Consensus        94 ~------~~~~~~~L~~l~l--~~n~~~~-----~~~~~~~~~~L~~l~l~~n~l  135 (136)
                      +      +....++|++|++  ++|.++.     +...+...+.|++|++++|.+
T Consensus       109 g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i  163 (185)
T 1io0_A          109 GILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQ  163 (185)
T ss_dssp             HHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSH
T ss_pred             HHHHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCC
Confidence            3      3455568999999  8888853     445677778899999998875

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=99.02  E-value=2.8e-11  Score=84.45  Aligned_cols=131  Identities=11%  Similarity=0.063  Sum_probs=67.8

Q ss_pred             CCcccEEEcCCCcccccCccccc-CCCcccEEEcc--C----Cccccc-----cchhhhccCCCCEEEccCCcCcCCCCh
Q 039528            4 LKNLFELNLKGNNVEGHLPNCLK-YLSHLKVFDIS--Q----NQLSGS-----LSSTITSLTSLEYLDLSYNNFEGPCPL   71 (136)
Q Consensus         4 l~~L~~l~l~~~~l~~~~~~~~~-~l~~L~~L~l~--~----~~~~~~-----~~~~~~~~~~l~~l~l~~~~~~~~~~~   71 (136)
                      +++|+.|.+..+.+++.....+. .+++|+.|+++  +    +.++..     .+..+..+++|+.|++++ .+++....
T Consensus       371 ~~~L~~L~~~~~~l~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~l~~~~~~L~~L~L~~-~l~~~~~~  449 (594)
T 2p1m_B          371 CPKLESVLYFCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSG-LLTDKVFE  449 (594)
T ss_dssp             CTTCCEEEEEESCCCHHHHHHHHHHCTTCCEEEEEESSTTCCCTTTCCCTHHHHHHHHHHCTTCCEEECCS-SCCHHHHH
T ss_pred             chhHHHHHHhcCCcCHHHHHHHHhhCCCcceeEeecccCCCcccccCCchhhHHHHHHhhCCCccEEeecC-cccHHHHH
Confidence            34455555544555443333332 35666666665  2    233311     111234556666666654 33322222


Q ss_pred             HhhhcCccceEEEeccceeeecc--CC-CCCccccEEEcCCCCCCC--CChhhhcCCCCcEEEcCCCcC
Q 039528           72 SLLAHHSKLEVLVLSSTILVKTE--NF-LPTFQLKELGLANCSLNV--VPTFLLHQYDLKYLDLSHNNL  135 (136)
Q Consensus        72 ~~~~~~~~l~~l~l~~~~~~~~~--~~-~~~~~L~~l~l~~n~~~~--~~~~~~~~~~L~~l~l~~n~l  135 (136)
                      .....+++|+.+++++|.+.+..  .+ ..+++|+.|++++|.++.  +...+..+++|+.|++++|.+
T Consensus       450 ~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~~~~  518 (594)
T 2p1m_B          450 YIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFGDKALLANASKLETMRSLWMSSCSV  518 (594)
T ss_dssp             HHHHHCTTCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCSCCHHHHHHTGGGGGGSSEEEEESSCC
T ss_pred             HHHHhchhccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCCCcHHHHHHHHHhCCCCCEEeeeCCCC
Confidence            22223667777777776654332  11 335577888888877733  222445577788888877765

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=98.99  E-value=5.1e-10  Score=78.18  Aligned_cols=130  Identities=15%  Similarity=0.134  Sum_probs=75.8

Q ss_pred             CCcccEEEcCCCccccc---C------------cccccCCCcccEEEccCCccccccchhhh-ccCCCCEEEccCC-cCc
Q 039528            4 LKNLFELNLKGNNVEGH---L------------PNCLKYLSHLKVFDISQNQLSGSLSSTIT-SLTSLEYLDLSYN-NFE   66 (136)
Q Consensus         4 l~~L~~l~l~~~~l~~~---~------------~~~~~~l~~L~~L~l~~~~~~~~~~~~~~-~~~~l~~l~l~~~-~~~   66 (136)
                      +++|+.+++.++.....   .            +.....+++|++|+++++.+++..+..+. .+++|++|++.++ .+.
T Consensus        65 ~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~  144 (594)
T 2p1m_B           65 FPKVRSVELKGKPHFADFNLVPDGWGGYVYPWIEAMSSSYTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGFS  144 (594)
T ss_dssp             CTTCCEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESCEEEE
T ss_pred             CCCceEEeccCCCchhhcccccccccchhhHHHHHHHHhCCCCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCcCCCC
Confidence            46677777776542111   1            11123567788888887777655555554 5777888888777 333


Q ss_pred             CCCChHhhhcCccceEEEeccceeeecc------CCCCCccccEEEcCCCC--CC--CCChhhhcCCCCcEEEcCCC
Q 039528           67 GPCPLSLLAHHSKLEVLVLSSTILVKTE------NFLPTFQLKELGLANCS--LN--VVPTFLLHQYDLKYLDLSHN  133 (136)
Q Consensus        67 ~~~~~~~~~~~~~l~~l~l~~~~~~~~~------~~~~~~~L~~l~l~~n~--~~--~~~~~~~~~~~L~~l~l~~n  133 (136)
                      ..........+++|++|++++|.+.+..      ....+++|+.|++++|.  ++  .++..+..+++|++|++++|
T Consensus       145 ~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~  221 (594)
T 2p1m_B          145 TDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRA  221 (594)
T ss_dssp             HHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTTCCCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTT
T ss_pred             HHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhcCCcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCC
Confidence            2112233446777888888777654422      11245577777777775  21  12223455677777777765

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=98.95  E-value=1.5e-09  Score=72.03  Aligned_cols=130  Identities=20%  Similarity=0.192  Sum_probs=72.2

Q ss_pred             CCcccEEEcCCCcccccCcccccCCCcccEEEccCCccccccchhhh--ccCCCCEEEccC--CcCcCCCCh----Hhh-
Q 039528            4 LKNLFELNLKGNNVEGHLPNCLKYLSHLKVFDISQNQLSGSLSSTIT--SLTSLEYLDLSY--NNFEGPCPL----SLL-   74 (136)
Q Consensus         4 l~~L~~l~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~--~~~~l~~l~l~~--~~~~~~~~~----~~~-   74 (136)
                      +|+|+.|.++++.-. .++. + .+++|+.|++..+.+.......+.  .+++|++|+++.  +...+....    ..+ 
T Consensus       171 ~P~L~~L~L~g~~~l-~l~~-~-~~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~  247 (362)
T 2ra8_A          171 MPLLNNLKIKGTNNL-SIGK-K-PRPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFS  247 (362)
T ss_dssp             CTTCCEEEEECCBTC-BCCS-C-BCTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTGGGSC
T ss_pred             CCCCcEEEEeCCCCc-eecc-c-cCCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccccchhHHHHHHHHh
Confidence            455666666554211 1222 2 256666666666655433223333  577888887742  221111100    111 


Q ss_pred             -hcCccceEEEeccceeeecc-----CCCCCccccEEEcCCCCCCC-----CChhhhcCCCCcEEEcCCCcCC
Q 039528           75 -AHHSKLEVLVLSSTILVKTE-----NFLPTFQLKELGLANCSLNV-----VPTFLLHQYDLKYLDLSHNNLV  136 (136)
Q Consensus        75 -~~~~~l~~l~l~~~~~~~~~-----~~~~~~~L~~l~l~~n~~~~-----~~~~~~~~~~L~~l~l~~n~l~  136 (136)
                       ..+++|++|++.+|.+.+..     ....++.|++|+++.|.+++     ++..+..+++|+.|++++|.++
T Consensus       248 ~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~  320 (362)
T 2ra8_A          248 KDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLS  320 (362)
T ss_dssp             TTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCC
T ss_pred             cCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCC
Confidence             24678888888776654321     11345678888888888743     3334456788888888888764

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=98.92  E-value=3.8e-10  Score=68.25  Aligned_cols=112  Identities=20%  Similarity=0.175  Sum_probs=84.2

Q ss_pred             CCCCcccEEEcCCC-ccccc----CcccccCCCcccEEEccCCccccc----cchhhhccCCCCEEEccCCcCcCCCC--
Q 039528            2 CELKNLFELNLKGN-NVEGH----LPNCLKYLSHLKVFDISQNQLSGS----LSSTITSLTSLEYLDLSYNNFEGPCP--   70 (136)
Q Consensus         2 ~~l~~L~~l~l~~~-~l~~~----~~~~~~~l~~L~~L~l~~~~~~~~----~~~~~~~~~~l~~l~l~~~~~~~~~~--   70 (136)
                      ...+.|++|++++| .+.+.    +...+...++|++|++++|.+...    +...+...+.|++|++++|.+.....  
T Consensus        33 ~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~~~  112 (185)
T 1io0_A           33 NNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILA  112 (185)
T ss_dssp             TTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHH
T ss_pred             hcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHHHH
Confidence            35678999999999 88754    334556688999999999998743    33445567899999999999963221  


Q ss_pred             -hHhhhcCccceEEEe--ccceeeecc------CCCCCccccEEEcCCCCCC
Q 039528           71 -LSLLAHHSKLEVLVL--SSTILVKTE------NFLPTFQLKELGLANCSLN  113 (136)
Q Consensus        71 -~~~~~~~~~l~~l~l--~~~~~~~~~------~~~~~~~L~~l~l~~n~~~  113 (136)
                       ...+...+.|+++++  ++|.+.+..      .+...++|++|++++|.++
T Consensus       113 l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i~  164 (185)
T 1io0_A          113 LVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQG  164 (185)
T ss_dssp             HHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSHH
T ss_pred             HHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCCC
Confidence             123556778999999  788887654      2344568999999999884

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=98.88  E-value=3.8e-08  Score=66.20  Aligned_cols=59  Identities=10%  Similarity=0.073  Sum_probs=29.7

Q ss_pred             CCCCcccEEEcCCCcccccCcccccCCCcccEEEccCCccccccchhhhccCCCCEEEccC
Q 039528            2 CELKNLFELNLKGNNVEGHLPNCLKYLSHLKVFDISQNQLSGSLSSTITSLTSLEYLDLSY   62 (136)
Q Consensus         2 ~~l~~L~~l~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~l~~   62 (136)
                      .++++|+.+++..|.++......|. +..|+.+.+..+ ++.+....|..+.+|+.+++..
T Consensus       177 ~~c~~L~~l~l~~n~l~~I~~~aF~-~~~L~~l~lp~~-l~~I~~~aF~~~~~L~~l~l~~  235 (401)
T 4fdw_A          177 YYCYNLKKADLSKTKITKLPASTFV-YAGIEEVLLPVT-LKEIGSQAFLKTSQLKTIEIPE  235 (401)
T ss_dssp             TTCTTCCEEECTTSCCSEECTTTTT-TCCCSEEECCTT-CCEECTTTTTTCTTCCCEECCT
T ss_pred             hCcccCCeeecCCCcceEechhhEe-ecccCEEEeCCc-hheehhhHhhCCCCCCEEecCC
Confidence            4456666666666555533333333 345555555433 3333344555555566555543

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=98.86  E-value=7.1e-09  Score=66.00  Aligned_cols=65  Identities=28%  Similarity=0.351  Sum_probs=37.3

Q ss_pred             cCCCcccEEEccCCcccc--ccchhhhccCCCCEEEccCCcCcCCCChHhhhcCccceEEEeccceee
Q 039528           26 KYLSHLKVFDISQNQLSG--SLSSTITSLTSLEYLDLSYNNFEGPCPLSLLAHHSKLEVLVLSSTILV   91 (136)
Q Consensus        26 ~~l~~L~~L~l~~~~~~~--~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~   91 (136)
                      .++++|+.|++++|.+++  .++..+..+++|+.|++++|++.+.-....+..+ +|++|++.+|.+.
T Consensus       167 ~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~~~l~~l~~l-~L~~L~L~~Npl~  233 (267)
T 3rw6_A          167 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGL-KLEELWLDGNSLC  233 (267)
T ss_dssp             HHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSGGGGGGGTTS-CCSEEECTTSTTG
T ss_pred             hhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCchhhhhcccC-CcceEEccCCcCc
Confidence            446667777777776664  2334555667777777777776532111122222 6677777776654

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=98.84  E-value=4.8e-08  Score=65.69  Aligned_cols=79  Identities=16%  Similarity=0.224  Sum_probs=50.8

Q ss_pred             cccEEEcCCCcccccCcccccCCCcccEEEccCCccccccchhhhccCCCCEEEccCCcCcCCCChHhhhcCccceEEEe
Q 039528            6 NLFELNLKGNNVEGHLPNCLKYLSHLKVFDISQNQLSGSLSSTITSLTSLEYLDLSYNNFEGPCPLSLLAHHSKLEVLVL   85 (136)
Q Consensus         6 ~L~~l~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~~l~~l~l   85 (136)
                      +|+.+.+.. .+......+|.+|.+|+.+++.+|.++......|. ..+|+.+.+..+ +. .++..+|..+++|+.+.+
T Consensus       158 ~L~~i~lp~-~l~~I~~~aF~~c~~L~~l~l~~n~l~~I~~~aF~-~~~L~~l~lp~~-l~-~I~~~aF~~~~~L~~l~l  233 (401)
T 4fdw_A          158 TVQEIVFPS-TLEQLKEDIFYYCYNLKKADLSKTKITKLPASTFV-YAGIEEVLLPVT-LK-EIGSQAFLKTSQLKTIEI  233 (401)
T ss_dssp             CCCEEECCT-TCCEECSSTTTTCTTCCEEECTTSCCSEECTTTTT-TCCCSEEECCTT-CC-EECTTTTTTCTTCCCEEC
T ss_pred             CceEEEeCC-CccEehHHHhhCcccCCeeecCCCcceEechhhEe-ecccCEEEeCCc-hh-eehhhHhhCCCCCCEEec
Confidence            355555554 44444556777778888888877777644444444 577777777643 43 455566777778888877


Q ss_pred             ccc
Q 039528           86 SST   88 (136)
Q Consensus        86 ~~~   88 (136)
                      ..+
T Consensus       234 ~~~  236 (401)
T 4fdw_A          234 PEN  236 (401)
T ss_dssp             CTT
T ss_pred             CCC
Confidence            664

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=98.78  E-value=2.7e-09  Score=67.90  Aligned_cols=80  Identities=25%  Similarity=0.215  Sum_probs=62.8

Q ss_pred             hccCCCCEEEccCCcCcC--CCChHhhhcCccceEEEeccceeeeccCCCCCc--cccEEEcCCCCC-CCCC-------h
Q 039528           50 TSLTSLEYLDLSYNNFEG--PCPLSLLAHHSKLEVLVLSSTILVKTENFLPTF--QLKELGLANCSL-NVVP-------T  117 (136)
Q Consensus        50 ~~~~~l~~l~l~~~~~~~--~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~--~L~~l~l~~n~~-~~~~-------~  117 (136)
                      ..+++|+.|++++|++++  .++ ..+..+++|+.|++++|.+.....+..+.  .|++|++++|.+ +.+|       .
T Consensus       167 ~~l~~L~~L~Ls~N~l~~l~~l~-~~~~~l~~L~~L~Ls~N~i~~~~~l~~l~~l~L~~L~L~~Npl~~~~~~~~~y~~~  245 (267)
T 3rw6_A          167 ENIPELLSLNLSNNRLYRLDDMS-SIVQKAPNLKILNLSGNELKSERELDKIKGLKLEELWLDGNSLCDTFRDQSTYISA  245 (267)
T ss_dssp             HHCTTCCEEECTTSCCCCCGGGT-THHHHSTTCCEEECTTSCCCSGGGGGGGTTSCCSEEECTTSTTGGGCSSHHHHHHH
T ss_pred             hhCCCCCEEECCCCCCCCCccch-hHHhhCCCCCEEECCCCccCCchhhhhcccCCcceEEccCCcCccccCcchhHHHH
Confidence            468899999999999985  233 34678999999999999887665443333  899999999999 5555       2


Q ss_pred             hhhcCCCCcEEEc
Q 039528          118 FLLHQYDLKYLDL  130 (136)
Q Consensus       118 ~~~~~~~L~~l~l  130 (136)
                      .+..+++|+.||-
T Consensus       246 il~~~P~L~~LDg  258 (267)
T 3rw6_A          246 IRERFPKLLRLDG  258 (267)
T ss_dssp             HHHHCTTCCEESS
T ss_pred             HHHHCcccCeECC
Confidence            5788999998873

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=98.66  E-value=1.9e-08  Score=60.11  Aligned_cols=86  Identities=14%  Similarity=0.086  Sum_probs=58.1

Q ss_pred             CCcccEEEccCCccccccchhhhccCCCCEEEccCCc-CcCCCChHhhhcC----ccceEEEeccce-eeecc--CCCCC
Q 039528           28 LSHLKVFDISQNQLSGSLSSTITSLTSLEYLDLSYNN-FEGPCPLSLLAHH----SKLEVLVLSSTI-LVKTE--NFLPT   99 (136)
Q Consensus        28 l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~-~~~~~~~~~~~~~----~~l~~l~l~~~~-~~~~~--~~~~~   99 (136)
                      -..|+.+++++|.++......+..+++|++|+++++. ++.. ....+..+    ++|++|+++++. +++.+  ....+
T Consensus        60 ~~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~-gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~  138 (176)
T 3e4g_A           60 KYKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDG-CLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHF  138 (176)
T ss_dssp             CCCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHH-HHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGC
T ss_pred             CceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHH-HHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcC
Confidence            3468888888888776656667788888888888875 4422 22234333    468888888864 55543  33456


Q ss_pred             ccccEEEcCCCC-CCC
Q 039528          100 FQLKELGLANCS-LNV  114 (136)
Q Consensus       100 ~~L~~l~l~~n~-~~~  114 (136)
                      ++|+.|++++|. +++
T Consensus       139 ~~L~~L~L~~c~~Itd  154 (176)
T 3e4g_A          139 RNLKYLFLSDLPGVKE  154 (176)
T ss_dssp             TTCCEEEEESCTTCCC
T ss_pred             CCCCEEECCCCCCCCc
Confidence            788999988886 454

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=98.55  E-value=1.5e-07  Score=62.56  Aligned_cols=130  Identities=20%  Similarity=0.156  Sum_probs=83.8

Q ss_pred             CCcccEEEcCCCccc---------ccCcccccCCCcccEEEccCCccccccchhhhccCCCCEEEccCCcCcCCCChHh-
Q 039528            4 LKNLFELNLKGNNVE---------GHLPNCLKYLSHLKVFDISQNQLSGSLSSTITSLTSLEYLDLSYNNFEGPCPLSL-   73 (136)
Q Consensus         4 l~~L~~l~l~~~~l~---------~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~-   73 (136)
                      +++|+.|.+.+....         +.+...+..+|+|+.|.++++.-. .++. + .+++|++|++..+.+........ 
T Consensus       138 l~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~~~P~L~~L~L~g~~~l-~l~~-~-~~~~L~~L~L~~~~l~~~~l~~l~  214 (362)
T 2ra8_A          138 FAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNNL-SIGK-K-PRPNLKSLEIISGGLPDSVVEDIL  214 (362)
T ss_dssp             HTTCSEEEECCCCTTTCCGGGCBCCBCHHHHHTCTTCCEEEEECCBTC-BCCS-C-BCTTCSEEEEECSBCCHHHHHHHH
T ss_pred             cchhhheeecCcchhhcccccccccCHHHHHhcCCCCcEEEEeCCCCc-eecc-c-cCCCCcEEEEecCCCChHHHHHHH
Confidence            568888888654321         123355677899999999887311 2222 3 37899999998887753222121 


Q ss_pred             hhcCccceEEEecc--ce-eee-----cc-CC--CCCccccEEEcCCCCCC-CCChhhh---cCCCCcEEEcCCCcCC
Q 039528           74 LAHHSKLEVLVLSS--TI-LVK-----TE-NF--LPTFQLKELGLANCSLN-VVPTFLL---HQYDLKYLDLSHNNLV  136 (136)
Q Consensus        74 ~~~~~~l~~l~l~~--~~-~~~-----~~-~~--~~~~~L~~l~l~~n~~~-~~~~~~~---~~~~L~~l~l~~n~l~  136 (136)
                      ...+|+|++|++..  +. ..+     .. ..  ...++|+.|++.+|.++ ..+..+.   .+++|++|+++.|.++
T Consensus       215 ~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~  292 (362)
T 2ra8_A          215 GSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLT  292 (362)
T ss_dssp             HSBCTTCCEEEEECBCGGGTCCSCGGGTGGGSCTTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCB
T ss_pred             HccCCCCcEEEEeccccccccchhHHHHHHHHhcCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCC
Confidence            12689999999853  21 111     11 11  24679999999999984 2333333   4778999999999763

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=98.45  E-value=2.1e-07  Score=55.62  Aligned_cols=81  Identities=11%  Similarity=0.147  Sum_probs=38.2

Q ss_pred             ccEEEcCCCcccccCcccccCCCcccEEEccCCc-cccccchhhhcc----CCCCEEEccCCc-CcCCCChHhhhcCccc
Q 039528            7 LFELNLKGNNVEGHLPNCLKYLSHLKVFDISQNQ-LSGSLSSTITSL----TSLEYLDLSYNN-FEGPCPLSLLAHHSKL   80 (136)
Q Consensus         7 L~~l~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~-~~~~~~~~~~~~----~~l~~l~l~~~~-~~~~~~~~~~~~~~~l   80 (136)
                      |+.||++++.+++..-..+..+++|++|++++|. +++..-..+..+    ++|++|++++|. ++.. ....+..+++|
T Consensus        63 L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~-Gl~~L~~~~~L  141 (176)
T 3e4g_A           63 IQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDK-GIIALHHFRNL  141 (176)
T ss_dssp             EEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHH-HHHHGGGCTTC
T ss_pred             EeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHH-HHHHHhcCCCC
Confidence            4555555555555444445555555555555552 443322333332    245555555543 3321 11223445555


Q ss_pred             eEEEeccc
Q 039528           81 EVLVLSST   88 (136)
Q Consensus        81 ~~l~l~~~   88 (136)
                      ++|+++++
T Consensus       142 ~~L~L~~c  149 (176)
T 3e4g_A          142 KYLFLSDL  149 (176)
T ss_dssp             CEEEEESC
T ss_pred             CEEECCCC
Confidence            55555553

>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}

Probab=98.32  E-value=3.2e-06  Score=56.58  Aligned_cols=110  Identities=15%  Similarity=0.206  Sum_probs=63.3

Q ss_pred             cCcccccCCCcccEEEccCCccccccchhhhccCCCCEEEccCCcCcCCCChHhhhcCccceEEEecccee-eeccCCCC
Q 039528           20 HLPNCLKYLSHLKVFDISQNQLSGSLSSTITSLTSLEYLDLSYNNFEGPCPLSLLAHHSKLEVLVLSSTIL-VKTENFLP   98 (136)
Q Consensus        20 ~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~-~~~~~~~~   98 (136)
                      ....+|.++..|+.+.+..+... +....|..+..|+.+.+.. .+. .++..+|..+.+|+.+.+..+.. ....++..
T Consensus       256 i~~~aF~~c~~L~~i~lp~~~~~-I~~~aF~~c~~L~~i~l~~-~i~-~I~~~aF~~c~~L~~i~lp~~v~~I~~~aF~~  332 (394)
T 4gt6_A          256 IETHAFDSCAYLASVKMPDSVVS-IGTGAFMNCPALQDIEFSS-RIT-ELPESVFAGCISLKSIDIPEGITQILDDAFAG  332 (394)
T ss_dssp             ECTTTTTTCSSCCEEECCTTCCE-ECTTTTTTCTTCCEEECCT-TCC-EECTTTTTTCTTCCEEECCTTCCEECTTTTTT
T ss_pred             cccceeeecccccEEecccccce-ecCcccccccccccccCCC-ccc-ccCceeecCCCCcCEEEeCCcccEehHhHhhC
Confidence            33455666777777776554332 4445566666777776642 332 34445566677777777765421 11235566


Q ss_pred             CccccEEEcCCCCCCCCCh-hhhcCCCCcEEEcCCC
Q 039528           99 TFQLKELGLANCSLNVVPT-FLLHQYDLKYLDLSHN  133 (136)
Q Consensus        99 ~~~L~~l~l~~n~~~~~~~-~~~~~~~L~~l~l~~n  133 (136)
                      +.+|+.+.+-. .++.+.. ++..|.+|+.+++.++
T Consensus       333 C~~L~~i~ip~-sv~~I~~~aF~~C~~L~~i~~~~~  367 (394)
T 4gt6_A          333 CEQLERIAIPS-SVTKIPESAFSNCTALNNIEYSGS  367 (394)
T ss_dssp             CTTCCEEEECT-TCCBCCGGGGTTCTTCCEEEESSC
T ss_pred             CCCCCEEEECc-ccCEEhHhHhhCCCCCCEEEECCc
Confidence            66777776633 3555543 6666777777766654

>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}

Probab=98.26  E-value=3.7e-05  Score=51.47  Aligned_cols=128  Identities=13%  Similarity=0.137  Sum_probs=86.3

Q ss_pred             CCCCCcccEEEcCCCcccccCcccccCCCcccEEEccCCccccccchhhhccCCCCEEEccCCcCcCCCChHhhhcCccc
Q 039528            1 LCELKNLFELNLKGNNVEGHLPNCLKYLSHLKVFDISQNQLSGSLSSTITSLTSLEYLDLSYNNFEGPCPLSLLAHHSKL   80 (136)
Q Consensus         1 ~~~l~~L~~l~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~~l   80 (136)
                      |.++..|+.+.+...... ....+|.++..|+.+.+... ++.+....|..+.+|+.+++..+ ++ .+...+|..+.+|
T Consensus       261 F~~c~~L~~i~lp~~~~~-I~~~aF~~c~~L~~i~l~~~-i~~I~~~aF~~c~~L~~i~lp~~-v~-~I~~~aF~~C~~L  336 (394)
T 4gt6_A          261 FDSCAYLASVKMPDSVVS-IGTGAFMNCPALQDIEFSSR-ITELPESVFAGCISLKSIDIPEG-IT-QILDDAFAGCEQL  336 (394)
T ss_dssp             TTTCSSCCEEECCTTCCE-ECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEECCTT-CC-EECTTTTTTCTTC
T ss_pred             eeecccccEEecccccce-ecCcccccccccccccCCCc-ccccCceeecCCCCcCEEEeCCc-cc-EehHhHhhCCCCC
Confidence            345677888887665443 55678889999999999643 55455677889999999999764 43 4556679899999


Q ss_pred             eEEEecccee-eeccCCCCCccccEEEcCCCCCCCCChhhhcCCCCcEEEcCCCc
Q 039528           81 EVLVLSSTIL-VKTENFLPTFQLKELGLANCSLNVVPTFLLHQYDLKYLDLSHNN  134 (136)
Q Consensus        81 ~~l~l~~~~~-~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~L~~l~l~~n~  134 (136)
                      +.+.+..+.. ....++..+.+|+.+.+.++....  ..+..+.+|+.+.+..+.
T Consensus       337 ~~i~ip~sv~~I~~~aF~~C~~L~~i~~~~~~~~~--~~~~~~~~L~~i~i~~~~  389 (394)
T 4gt6_A          337 ERIAIPSSVTKIPESAFSNCTALNNIEYSGSRSQW--NAISTDSGLQNLPVAPGS  389 (394)
T ss_dssp             CEEEECTTCCBCCGGGGTTCTTCCEEEESSCHHHH--HTCBCCCCC---------
T ss_pred             CEEEECcccCEEhHhHhhCCCCCCEEEECCceeeh--hhhhccCCCCEEEeCCCC
Confidence            9999976532 222477888899999998765421  356677888888876654

>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}

Probab=98.23  E-value=1.7e-05  Score=52.70  Aligned_cols=106  Identities=16%  Similarity=0.223  Sum_probs=56.0

Q ss_pred             cccccCCCcccEEEccCCccccccchhhhccCCCCEEEccCCcCcCCCChHhhhcCccceEEEeccceeeec--cCCCCC
Q 039528           22 PNCLKYLSHLKVFDISQNQLSGSLSSTITSLTSLEYLDLSYNNFEGPCPLSLLAHHSKLEVLVLSSTILVKT--ENFLPT   99 (136)
Q Consensus        22 ~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~--~~~~~~   99 (136)
                      ...+.++..|+.+.+..+ ++.+....+..+.+++.+.+..+ +. .++..++..+.+|+.+.+..+.+..+  .++..+
T Consensus       233 ~~~f~~~~~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l~~~-i~-~i~~~aF~~c~~L~~i~l~~~~i~~I~~~aF~~c  309 (379)
T 4h09_A          233 DGAFYGMKALDEIAIPKN-VTSIGSFLLQNCTALKTLNFYAK-VK-TVPYLLCSGCSNLTKVVMDNSAIETLEPRVFMDC  309 (379)
T ss_dssp             TTTTTTCSSCCEEEECTT-CCEECTTTTTTCTTCCEEEECCC-CS-EECTTTTTTCTTCCEEEECCTTCCEECTTTTTTC
T ss_pred             cccccCCccceEEEcCCC-ccEeCccccceeehhcccccccc-ce-eccccccccccccccccccccccceehhhhhcCC
Confidence            344555666666666544 33333445555666666665433 22 23334466666666666665544333  245555


Q ss_pred             ccccEEEcCCCCCCCCCh-hhhcCCCCcEEEcC
Q 039528          100 FQLKELGLANCSLNVVPT-FLLHQYDLKYLDLS  131 (136)
Q Consensus       100 ~~L~~l~l~~n~~~~~~~-~~~~~~~L~~l~l~  131 (136)
                      .+|+.+.+.. .++.+.. ++..|.+|+.+.+.
T Consensus       310 ~~L~~i~lp~-~l~~I~~~aF~~C~~L~~i~ip  341 (379)
T 4h09_A          310 VKLSSVTLPT-ALKTIQVYAFKNCKALSTISYP  341 (379)
T ss_dssp             TTCCEEECCT-TCCEECTTTTTTCTTCCCCCCC
T ss_pred             CCCCEEEcCc-cccEEHHHHhhCCCCCCEEEEC
Confidence            5666666643 2444442 55566666655553

>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}

Probab=98.17  E-value=1.8e-05  Score=52.98  Aligned_cols=81  Identities=15%  Similarity=0.118  Sum_probs=50.3

Q ss_pred             hhhccCCCCEEEccCCcCcCCCChHhhhcCccceEEEeccceeeec--cCCCCCccccEEEcCCCCCCCCC-hhhhcCCC
Q 039528           48 TITSLTSLEYLDLSYNNFEGPCPLSLLAHHSKLEVLVLSSTILVKT--ENFLPTFQLKELGLANCSLNVVP-TFLLHQYD  124 (136)
Q Consensus        48 ~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~--~~~~~~~~L~~l~l~~n~~~~~~-~~~~~~~~  124 (136)
                      .+..+.+|+.+.+..+ +. .++..++..+.+|+.+++..+ +..+  .++..+.+|+.+.+..+ +..++ .++..|.+
T Consensus       292 ~F~~~~~L~~i~l~~~-i~-~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~  367 (394)
T 4fs7_A          292 TFYGCSSLTEVKLLDS-VK-FIGEEAFESCTSLVSIDLPYL-VEEIGKRSFRGCTSLSNINFPLS-LRKIGANAFQGCIN  367 (394)
T ss_dssp             TTTTCTTCCEEEECTT-CC-EECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTBTTCTT
T ss_pred             cccccccccccccccc-cc-eechhhhcCCCCCCEEEeCCc-ccEEhHHhccCCCCCCEEEECcc-ccEehHHHhhCCCC
Confidence            4555666777766543 32 344455777777777777654 2222  36666677787777554 55554 36777778


Q ss_pred             CcEEEcCC
Q 039528          125 LKYLDLSH  132 (136)
Q Consensus       125 L~~l~l~~  132 (136)
                      |+.+++..
T Consensus       368 L~~i~lp~  375 (394)
T 4fs7_A          368 LKKVELPK  375 (394)
T ss_dssp             CCEEEEEG
T ss_pred             CCEEEECC
Confidence            88777653

>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}

Probab=98.15  E-value=8.9e-06  Score=54.43  Aligned_cols=57  Identities=14%  Similarity=0.143  Sum_probs=28.5

Q ss_pred             CCCCcccEEEcCCCcccccCcccccCCCcccEEEccCCccccccchhhhccCCCCEEEc
Q 039528            2 CELKNLFELNLKGNNVEGHLPNCLKYLSHLKVFDISQNQLSGSLSSTITSLTSLEYLDL   60 (136)
Q Consensus         2 ~~l~~L~~l~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~l   60 (136)
                      .++.+|+.+.+..+ ++.....+|.+|.+|+.+.+.++ ++.+....|..+.+|+.+.+
T Consensus        68 ~~c~~L~~i~lp~~-i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~c~~L~~i~~  124 (394)
T 4fs7_A           68 QGCRKVTEIKIPST-VREIGEFAFENCSKLEIINIPDS-VKMIGRCTFSGCYALKSILL  124 (394)
T ss_dssp             TTCTTEEEEECCTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCCCCC
T ss_pred             hCCCCceEEEeCCC-ccCcchhHhhCCCCCcEEEeCCC-ceEccchhhcccccchhhcc
Confidence            34555666666432 44344455666666666666543 33233344445555444433

>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1

Probab=98.12  E-value=7.3e-06  Score=49.85  Aligned_cols=110  Identities=19%  Similarity=0.169  Sum_probs=75.4

Q ss_pred             ccCCCcccEEEccCC-cccc----ccchhhhccCCCCEEEccCCcCcCCC---ChHhhhcCccceEEEeccceeeecc--
Q 039528           25 LKYLSHLKVFDISQN-QLSG----SLSSTITSLTSLEYLDLSYNNFEGPC---PLSLLAHHSKLEVLVLSSTILVKTE--   94 (136)
Q Consensus        25 ~~~l~~L~~L~l~~~-~~~~----~~~~~~~~~~~l~~l~l~~~~~~~~~---~~~~~~~~~~l~~l~l~~~~~~~~~--   94 (136)
                      +..-+.|++|+++++ .+..    .+...+..-..|+.|++++|.+....   .+.++...+.|++|++++|.+.+.+  
T Consensus        37 l~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~  116 (197)
T 1pgv_A           37 REDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLA  116 (197)
T ss_dssp             HTTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHH
T ss_pred             HhcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHH
Confidence            345678888888875 6652    23345555678889999888885221   1234556778999999998887765  


Q ss_pred             ----CCCCCccccEEEcCCC---CCCC-----CChhhhcCCCCcEEEcCCCc
Q 039528           95 ----NFLPTFQLKELGLANC---SLNV-----VPTFLLHQYDLKYLDLSHNN  134 (136)
Q Consensus        95 ----~~~~~~~L~~l~l~~n---~~~~-----~~~~~~~~~~L~~l~l~~n~  134 (136)
                          +.....+|+.|+++++   .++.     +..++..-+.|+.|+++.|.
T Consensus       117 ala~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~~~  168 (197)
T 1pgv_A          117 RLLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFAS  168 (197)
T ss_dssp             HHHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCC
T ss_pred             HHHHHHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccCCC
Confidence                3455567999999765   4432     44467777889999988764

>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}

Probab=98.03  E-value=4.3e-05  Score=50.79  Aligned_cols=117  Identities=13%  Similarity=0.136  Sum_probs=80.0

Q ss_pred             CCCcccEEEcCCCcccccCcccccCCCcccEEEccCCccccccchhhhccCCCCEEEccCCcCcCCCChHhhhcCccceE
Q 039528            3 ELKNLFELNLKGNNVEGHLPNCLKYLSHLKVFDISQNQLSGSLSSTITSLTSLEYLDLSYNNFEGPCPLSLLAHHSKLEV   82 (136)
Q Consensus         3 ~l~~L~~l~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~~l~~   82 (136)
                      ++..|+.+.+..+ ++.....+|.++..|+.+.+..+ +.......|..+.+|+.+.+..+.++ .++..+|..+.+|+.
T Consensus       238 ~~~~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l~~~-i~~i~~~aF~~c~~L~~i~l~~~~i~-~I~~~aF~~c~~L~~  314 (379)
T 4h09_A          238 GMKALDEIAIPKN-VTSIGSFLLQNCTALKTLNFYAK-VKTVPYLLCSGCSNLTKVVMDNSAIE-TLEPRVFMDCVKLSS  314 (379)
T ss_dssp             TCSSCCEEEECTT-CCEECTTTTTTCTTCCEEEECCC-CSEECTTTTTTCTTCCEEEECCTTCC-EECTTTTTTCTTCCE
T ss_pred             CCccceEEEcCCC-ccEeCccccceeehhcccccccc-ceeccccccccccccccccccccccc-eehhhhhcCCCCCCE
Confidence            4566777777554 44455667888999999988654 44355567888999999999887776 566667888999999


Q ss_pred             EEecccee-eeccCCCCCccccEEEcCCCCCCCCC-hhhhcCC
Q 039528           83 LVLSSTIL-VKTENFLPTFQLKELGLANCSLNVVP-TFLLHQY  123 (136)
Q Consensus        83 l~l~~~~~-~~~~~~~~~~~L~~l~l~~n~~~~~~-~~~~~~~  123 (136)
                      +.+..+.. ....++..+.+|+.+.+-.+ ++.+. .++..+.
T Consensus       315 i~lp~~l~~I~~~aF~~C~~L~~i~ip~~-v~~I~~~aF~~c~  356 (379)
T 4h09_A          315 VTLPTALKTIQVYAFKNCKALSTISYPKS-ITLIESGAFEGSS  356 (379)
T ss_dssp             EECCTTCCEECTTTTTTCTTCCCCCCCTT-CCEECTTTTTTSS
T ss_pred             EEcCccccEEHHHHhhCCCCCCEEEECCc-cCEEchhHhhCCC
Confidence            99976532 22236777778888776432 44443 2455443

>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1

Probab=97.70  E-value=3.2e-05  Score=47.05  Aligned_cols=109  Identities=17%  Similarity=0.170  Sum_probs=76.4

Q ss_pred             CCcccEEEcCCC-ccccc----CcccccCCCcccEEEccCCccccc----cchhhhccCCCCEEEccCCcCcCCCCh---
Q 039528            4 LKNLFELNLKGN-NVEGH----LPNCLKYLSHLKVFDISQNQLSGS----LSSTITSLTSLEYLDLSYNNFEGPCPL---   71 (136)
Q Consensus         4 l~~L~~l~l~~~-~l~~~----~~~~~~~l~~L~~L~l~~~~~~~~----~~~~~~~~~~l~~l~l~~~~~~~~~~~---   71 (136)
                      -+.|+.|+++++ .+.+.    +...+..-..|+.|++++|.+...    +...+..-..|++|+++.|.+......   
T Consensus        40 n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~ala  119 (197)
T 1pgv_A           40 DTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLL  119 (197)
T ss_dssp             CSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHH
T ss_pred             CCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHHHH
Confidence            467899999985 87654    344566778999999999998743    334455667899999999999633221   


Q ss_pred             HhhhcCccceEEEeccc---eeeecc------CCCCCccccEEEcCCCCC
Q 039528           72 SLLAHHSKLEVLVLSST---ILVKTE------NFLPTFQLKELGLANCSL  112 (136)
Q Consensus        72 ~~~~~~~~l~~l~l~~~---~~~~~~------~~~~~~~L~~l~l~~n~~  112 (136)
                      .++.....|++|++.++   .+.+..      +....++|+.|+++.+.+
T Consensus       120 ~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~~~~  169 (197)
T 1pgv_A          120 RSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFASM  169 (197)
T ss_dssp             HHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCCH
T ss_pred             HHHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccCCCc
Confidence            23445678999999864   333322      234455889999987765

>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*

Probab=97.41  E-value=0.00054  Score=38.83  Aligned_cols=35  Identities=26%  Similarity=0.270  Sum_probs=19.8

Q ss_pred             cccEEEcCCCCCCCCCh-hhhcCCCCcEEEcCCCcC
Q 039528          101 QLKELGLANCSLNVVPT-FLLHQYDLKYLDLSHNNL  135 (136)
Q Consensus       101 ~L~~l~l~~n~~~~~~~-~~~~~~~L~~l~l~~n~l  135 (136)
                      +++.|++++|.++.++. .+..+++|+.|++++|++
T Consensus        32 ~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~   67 (130)
T 3rfe_A           32 DTTELVLTGNNLTALPPGLLDALPALRTAHLGANPW   67 (130)
T ss_dssp             TCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCC
T ss_pred             CCCEEECCCCcCCccChhhhhhccccCEEEecCCCe
Confidence            45566666666655553 445555666666666554

>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*

Probab=97.28  E-value=0.0012  Score=37.42  Aligned_cols=56  Identities=14%  Similarity=0.221  Sum_probs=37.0

Q ss_pred             EEEcCCCccc-ccCcccccCCCcccEEEccCCccccccchhhhccCCCCEEEccCCcCc
Q 039528            9 ELNLKGNNVE-GHLPNCLKYLSHLKVFDISQNQLSGSLSSTITSLTSLEYLDLSYNNFE   66 (136)
Q Consensus         9 ~l~l~~~~l~-~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~   66 (136)
                      .++-+++.++ ..+|..+  -+++++|++++|.++...++.|..+++|+.+++.+|.+.
T Consensus        12 ~v~Cs~~~L~~~~vP~~l--p~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~   68 (130)
T 3rfe_A           12 LVDCGRRGLTWASLPTAF--PVDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWR   68 (130)
T ss_dssp             EEECCSSCCCTTTSCSCC--CTTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCB
T ss_pred             EEEeCCCCCccccCCCCC--CcCCCEEECCCCcCCccChhhhhhccccCEEEecCCCee
Confidence            5666666665 2344322  235778888888887655666777888888888877664

>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}

Probab=85.99  E-value=1.2  Score=23.67  Aligned_cols=47  Identities=17%  Similarity=0.118  Sum_probs=28.1

Q ss_pred             cccccCcccccCCCcccEEEccCCccccccchhhhccCCCCEEEccCC
Q 039528           16 NVEGHLPNCLKYLSHLKVFDISQNQLSGSLSSTITSLTSLEYLDLSYN   63 (136)
Q Consensus        16 ~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~l~~~   63 (136)
                      .++.....+|.+|.+|+.+.+..+ ++.+....|..+.+|+.+.+...
T Consensus         7 ~vt~I~~~aF~~c~~L~~i~iP~~-v~~Ig~~aF~~C~~L~~i~~~~~   53 (100)
T 2lz0_A            7 PVVGMDKSLFAGNTVIREITVQPN-IGLLYDGMFSGCTALEKLILTGE   53 (100)
T ss_dssp             CCCSSCSCTTTTCTTCCCEEECTT-SSCCCTTSSTTCTTCCCEEECCS
T ss_pred             ccCEecHHHhcCCCCCcEEEcCCc-hheEcHHHHhccCCccEEEEcCC
Confidence            344444556677777777777654 33344556666777777666543

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	136
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	2e-08
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	4e-07
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	6e-07
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	8e-06
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	1e-05
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	7e-05
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	8e-04
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	6e-07
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	1e-04
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	7e-04
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	4e-05
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	7e-04
d1h6ua2	227	c.10.2.1 (A:36-262) Internalin H {Listeria monocyt	8e-04
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	0.001
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	0.003
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	0.002
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	0.002
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	0.003
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	0.003

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 49.0 bits (115), Expect = 2e-08
 Identities = 20/71 (28%), Positives = 29/71 (40%), Gaps = 1/71 (1%)

Query: 2   CELKNLFELNLKGNNVEGHLPNCLKYLSHLKVFDISQNQLSGSLSSTITSLTSLEYLDLS 61
              KNL  L+L+ N + G LP  L  L  L   ++S N L G +     +L   +    +
Sbjct: 241 GLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQ-GGNLQRFDVSAYA 299

Query: 62  YNNFEGPCPLS 72
            N      PL 
Sbjct: 300 NNKCLCGSPLP 310

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 45.5 bits (106), Expect = 4e-07
 Identities = 15/67 (22%), Positives = 29/67 (43%), Gaps = 2/67 (2%)

Query: 20  HLPNCLKYLSHLKVFDISQNQLSGSLSSTITSLTSLEYLDLSYNNFEGPCPLSLLAHHSK 79
                +    +L   D+  N++ G+L   +T L  L  L++S+NN  G  P     +  +
Sbjct: 235 FDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIP--QGGNLQR 292

Query: 80  LEVLVLS 86
            +V   +
Sbjct: 293 FDVSAYA 299

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 45.0 bits (105), Expect = 6e-07
 Identities = 23/86 (26%), Positives = 42/86 (48%), Gaps = 7/86 (8%)

Query: 2   CELKNLFELNLKGNNVEGHLPNCLKYLSHLKVFDISQNQLSGSLSSTITSLTSLEYLDLS 61
             LKNL  L L  NN+    P  +  L+ L+    + N++S    S++ +LT++ +L   
Sbjct: 304 SNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFANNKVSDV--SSLANLTNINWLSAG 359

Query: 62  YNNFEGPCPLSLLAHHSKLEVLVLSS 87
           +N      PL+ L   +++  L L+ 
Sbjct: 360 HNQISDLTPLANL---TRITQLGLND 382

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 41.5 bits (96), Expect = 8e-06
 Identities = 35/150 (23%), Positives = 58/150 (38%), Gaps = 24/150 (16%)

Query: 5   KNLFELNLKGNNVEGHLPNCLKYLSHLKVFDISQNQLSGSLSSTITSLTSLEYLDLSYNN 64
            NL EL+L GN ++      L  L++L   D++ NQ+S      ++ LT L  L L  N 
Sbjct: 219 TNLDELSLNGNQLKD--IGTLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQ 274

Query: 65  FEGPCPLSLLAHHSK-------------------LEVLVLSSTILVKTENFLPTFQLKEL 105
                PL+ L   +                    L  L L    +          +L+ L
Sbjct: 275 ISNISPLAGLTALTNLELNENQLEDISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRL 334

Query: 106 GLANCSLNVVPTFLLHQYDLKYLDLSHNNL 135
             AN  ++ V + L +  ++ +L   HN +
Sbjct: 335 FFANNKVSDVSS-LANLTNINWLSAGHNQI 363

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 41.1 bits (95), Expect = 1e-05
 Identities = 14/63 (22%), Positives = 24/63 (38%), Gaps = 4/63 (6%)

Query: 1   LCELKNLFELNLKGNNVEGHLPNCLKYLSHLKVFDISQNQLSGSLSSTITSLTSLEYLDL 60
           +  L  L  L    N V     + L  L+++       NQ+S      + +LT +  L L
Sbjct: 325 VSSLTKLQRLFFANNKVSD--VSSLANLTNINWLSAGHNQISDLTP--LANLTRITQLGL 380

Query: 61  SYN 63
           +  
Sbjct: 381 NDQ 383

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 38.8 bits (89), Expect = 7e-05
 Identities = 33/153 (21%), Positives = 58/153 (37%), Gaps = 26/153 (16%)

Query: 1   LCELKNLFELNLKGNNVEGHLPNCLKYLSHLKVFDISQNQLSGSLS-------------- 46
           L  L NL +L+L  N +    P  L  L+ L    +  NQ+S                  
Sbjct: 237 LASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISPLAGLTALTNLELNE 294

Query: 47  ------STITSLTSLEYLDLSYNNFEGPCPLSLLAHHSKLEVLVLSSTILVKTENFLPTF 100
                 S I++L +L YL L +NN     P+S L   +KL+ L  ++  +    +     
Sbjct: 295 NQLEDISPISNLKNLTYLTLYFNNISDISPVSSL---TKLQRLFFANNKVSDVSSLANLT 351

Query: 101 QLKELGLANCSLNVVPTFLLHQYDLKYLDLSHN 133
            +  L   +  ++ +   L +   +  L L+  
Sbjct: 352 NINWLSAGHNQISDLTP-LANLTRITQLGLNDQ 383

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 35.7 bits (81), Expect = 8e-04
 Identities = 33/134 (24%), Positives = 52/134 (38%), Gaps = 8/134 (5%)

Query: 2   CELKNLFELNLKGNNVEGHLPNCLKYLSHLKVFDISQNQLSGSLSSTITSLTSLEYLDLS 61
            +L NL  L    N +    P  +   ++L    ++ NQL      T+ SLT+L  LDL+
Sbjct: 194 AKLTNLESLIATNNQISDITPLGIL--TNLDELSLNGNQLKDI--GTLASLTNLTDLDLA 249

Query: 62  YNNFEGPCPLSLLAHHSKLEVLVLSSTILVKTENFLPTFQLKELGLANCSLNVVPTFLLH 121
            N      PLS     +KL  L L +  +                  N +     + + +
Sbjct: 250 NNQISNLAPLS---GLTKLTELKLGANQISNISPL-AGLTALTNLELNENQLEDISPISN 305

Query: 122 QYDLKYLDLSHNNL 135
             +L YL L  NN+
Sbjct: 306 LKNLTYLTLYFNNI 319

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.0 bits (104), Expect = 6e-07
 Identities = 15/91 (16%), Positives = 33/91 (36%), Gaps = 9/91 (9%)

Query: 6  NLFELNLKGNNV-EGHLPNCLKYLSHLKVFDISQNQLSG----SLSSTITSLTSLEYLDL 60
          ++  L+++   + +      L  L   +V  +    L+      +SS +    +L  L+L
Sbjct: 3  DIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNL 62

Query: 61 SYNNFEGPCPLSLLA----HHSKLEVLVLSS 87
            N         +L        K++ L L +
Sbjct: 63 RSNELGDVGVHCVLQGLQTPSCKIQKLSLQN 93

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.4 bits (87), Expect = 1e-04
 Identities = 21/79 (26%), Positives = 31/79 (39%), Gaps = 8/79 (10%)

Query: 20  HLPNCLKYLSHLKVFDISQNQLSG----SLSSTITSLTSLEYLDLSYNNFEGPCPLSLLA 75
                 +  S L+V  ++   +S     SL++T+ +  SL  LDLS N       L L+ 
Sbjct: 360 LCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVE 419

Query: 76  ----HHSKLEVLVLSSTIL 90
                   LE LVL     
Sbjct: 420 SVRQPGCLLEQLVLYDIYW 438

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.1 bits (81), Expect = 7e-04
 Identities = 9/75 (12%), Positives = 21/75 (28%), Gaps = 9/75 (12%)

Query: 4   LKNLFELNLKGNNVEG----HLPNCLKYLSHLKVFDISQNQLSGSLSSTITSL-----TS 54
           L+    + L    +       + + L+    L   ++  N+L       +          
Sbjct: 26  LQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQTPSCK 85

Query: 55  LEYLDLSYNNFEGPC 69
           ++ L L      G  
Sbjct: 86  IQKLSLQNCCLTGAG 100

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 39.6 bits (91), Expect = 4e-05
 Identities = 24/132 (18%), Positives = 41/132 (31%), Gaps = 1/132 (0%)

Query: 5   KNLFELNLKGNNVEGHLPNCLKYLSHLKVFDISQNQLSGSLSSTITSLTSLEYLDLSYNN 64
            +   L+L+ N +        K L +L    +  N++S         L  LE L LS N 
Sbjct: 31  PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQ 90

Query: 65  FEGPCPLSLLAHHSKLEVLVLSSTILVKTENFLPTFQLKELGLANC-SLNVVPTFLLHQY 123
            +                    + +     N L    + ELG     S  +         
Sbjct: 91  LKELPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMK 150

Query: 124 DLKYLDLSHNNL 135
            L Y+ ++  N+
Sbjct: 151 KLSYIRIADTNI 162

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 36.2 bits (82), Expect = 7e-04
 Identities = 26/135 (19%), Positives = 45/135 (33%), Gaps = 4/135 (2%)

Query: 2   CELKNLFELNLKGNNVEGHLPNCLKYLSHLKVFDISQNQLSGSLSSTITSLTSLEYLDLS 61
                + EL        G      + +  L    I+   ++           SL  L L 
Sbjct: 123 LNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQGL---PPSLTELHLD 179

Query: 62  YNNFEGPCPLSLLAHHSKLEVLVLSSTILVKTENFLPTF-QLKELGLANCSLNVVPTFLL 120
            N        SL   ++  ++ +  ++I       L     L+EL L N  L  VP  L 
Sbjct: 180 GNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVKVPGGLA 239

Query: 121 HQYDLKYLDLSHNNL 135
               ++ + L +NN+
Sbjct: 240 DHKYIQVVYLHNNNI 254

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

 Score = 35.8 bits (81), Expect = 8e-04
 Identities = 17/65 (26%), Positives = 26/65 (40%), Gaps = 5/65 (7%)

Query: 22  PNCLKYLSHLKVFDISQNQLSGSLSSTITSLTSLEYLDLSYNNFEGPCPLSLLAHHSKLE 81
              L  LS L       N++S    S + SL +L  + L  N      PL+     S L 
Sbjct: 166 LTPLANLSKLTTLKADDNKISDI--SPLASLPNLIEVHLKNNQISDVSPLANT---SNLF 220

Query: 82  VLVLS 86
           ++ L+
Sbjct: 221 IVTLT 225

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 35.2 bits (79), Expect = 0.001
 Identities = 16/66 (24%), Positives = 23/66 (34%), Gaps = 8/66 (12%)

Query: 2   CELKNLFELNLKGNNVEGHLPNCLKYLSHLKVFDISQNQLSGSLSSTITSLTSLEYLDLS 61
               +L ELN+  N +   LP     L  L     S N L+           +L+ L + 
Sbjct: 281 DLPPSLEELNVSNNKLI-ELPALPPRLERL---IASFNHLA----EVPELPQNLKQLHVE 332

Query: 62  YNNFEG 67
           YN    
Sbjct: 333 YNPLRE 338

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 34.0 bits (76), Expect = 0.003
 Identities = 23/90 (25%), Positives = 32/90 (35%), Gaps = 7/90 (7%)

Query: 37  SQNQLSGSLSSTITSLTSLEYLDLSYNNFEGPCPLSLLAHHSKLEVLVLSSTILVKTENF 96
             N  S  + S      SLE L++S N         L A   +LE L+ S   L +    
Sbjct: 268 YLNASSNEIRSLCDLPPSLEELNVSNNKLI-----ELPALPPRLERLIASFNHLAEVPEL 322

Query: 97  LPTFQLKELGLANCSLNVVPTFLLHQYDLK 126
                LK+L +    L   P       DL+
Sbjct: 323 PQ--NLKQLHVEYNPLREFPDIPESVEDLR 350

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 34.8 bits (78), Expect = 0.002
 Identities = 20/74 (27%), Positives = 30/74 (40%)

Query: 1   LCELKNLFELNLKGNNVEGHLPNCLKYLSHLKVFDISQNQLSGSLSSTITSLTSLEYLDL 60
              L +L  L L  N V    P+  + L  L    +  N LS   +  +  L +L+YL L
Sbjct: 173 FRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRL 232

Query: 61  SYNNFEGPCPLSLL 74
           + N +   C    L
Sbjct: 233 NDNPWVCDCRARPL 246

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 33.9 bits (77), Expect = 0.002
 Identities = 29/106 (27%), Positives = 43/106 (40%), Gaps = 6/106 (5%)

Query: 32  KVFDISQNQLSGSLSSTITSLTSLEYLDLSYNNFEGPCPLSLLAHHSKLEVLVLSSTILV 91
           +V  ++   L+      +  L  + +LDLS+N      P   LA    LEVL  S   L 
Sbjct: 1   RVLHLAHKDLTVL--CHLEQLLLVTHLDLSHNRLRALPPA--LAALRCLEVLQASDNALE 56

Query: 92  KTENFLPTFQLKELGLANCSLNVVPT--FLLHQYDLKYLDLSHNNL 135
             +      +L+EL L N  L        L+    L  L+L  N+L
Sbjct: 57  NVDGVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSL 102

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 34.3 bits (77), Expect = 0.003
 Identities = 11/62 (17%), Positives = 20/62 (32%), Gaps = 1/62 (1%)

Query: 15  NNVEGHLPNCLKYLSHLKVFDISQNQLSGSLSSTITSLTSLEYLDLSYNNFEGPCPLSLL 74
           NN+       L  L +L    + +N L  ++         L +  L  N +   C +   
Sbjct: 158 NNLTELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGNPWLCNCEILYF 216

Query: 75  AH 76
             
Sbjct: 217 RR 218

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 33.9 bits (76), Expect = 0.003
 Identities = 15/76 (19%), Positives = 26/76 (34%), Gaps = 3/76 (3%)

Query: 2  CELKNLFELNLKGNNVEGHLPNCLKYLSHLKVFDISQNQLSGSLSSTITSLTSLEYLDLS 61
           ++ +  E+N    N+   LP  L       +  +S+N L     +T+   T L  L+L 
Sbjct: 7  SKVASHLEVNCDKRNLT-ALPPDL--PKDTTILHLSENLLYTFSLATLMPYTRLTQLNLD 63

Query: 62 YNNFEGPCPLSLLAHH 77
                      L   
Sbjct: 64 RAELTKLQVDGTLPVL 79

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	136
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	99.81
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.77
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	99.77
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	99.77
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	99.76
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	99.73
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	99.73
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.72
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	99.72
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	99.72
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	99.7
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	99.69
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	99.69
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.68
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	99.68
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	99.67
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.66
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	99.63
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	99.62
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	99.6
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	99.6
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	99.55
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	99.53
d2ifga3	156	High affinity nerve growth factor receptor, N-term	99.5
d2ifga3	156	High affinity nerve growth factor receptor, N-term	99.49
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	99.49
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	99.4
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	99.32
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	99.27
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	99.22
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	99.11
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	99.09
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	99.07
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	98.98
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	98.92
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	98.91
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	98.6
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	98.6
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	98.51
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	98.28
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	98.06
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	97.81

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.81  E-value=6.6e-19  Score=110.79  Aligned_cols=130  Identities=28%  Similarity=0.273  Sum_probs=83.0

Q ss_pred             CCcccEEEcCCCcccccCcccccCCCcccEEEccCCccccccchhhhccCCCCEEEccCCcCcCCCChHhhhcCccceEE
Q 039528            4 LKNLFELNLKGNNVEGHLPNCLKYLSHLKVFDISQNQLSGSLSSTITSLTSLEYLDLSYNNFEGPCPLSLLAHHSKLEVL   83 (136)
Q Consensus         4 l~~L~~l~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~~l~~l   83 (136)
                      +++|++|++++|.+. ..+..+..+++|++|+++++.+....+..+..+.+++.+++.+|.+. .++...+..++.++.+
T Consensus        76 l~~L~~L~Ls~N~l~-~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~l~~L~l~~n~l~-~l~~~~~~~l~~l~~l  153 (266)
T d1p9ag_          76 LPVLGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELK-TLPPGLLTPTPKLEKL  153 (266)
T ss_dssp             CTTCCEEECCSSCCS-SCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCC-CCCTTTTTTCTTCCEE
T ss_pred             ccccccccccccccc-ccccccccccccccccccccccceeeccccccccccccccccccccc-eeccccccccccchhc
Confidence            334444444444443 22333444444444444444444333444445555666666666665 3444556677888888


Q ss_pred             Eeccceeeecc--CCCCCccccEEEcCCCCCCCCChhhhcCCCCcEEEcCCCcC
Q 039528           84 VLSSTILVKTE--NFLPTFQLKELGLANCSLNVVPTFLLHQYDLKYLDLSHNNL  135 (136)
Q Consensus        84 ~l~~~~~~~~~--~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~L~~l~l~~n~l  135 (136)
                      ++++|.+...+  .+..+++|++|++++|+++.+|..+..+++|+.|++++|++
T Consensus       154 ~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~L~~lp~~~~~~~~L~~L~L~~Np~  207 (266)
T d1p9ag_         154 SLANNNLTELPAGLLNGLENLDTLLLQENSLYTIPKGFFGSHLLPFAFLHGNPW  207 (266)
T ss_dssp             ECTTSCCSCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCCCSEEECCSCCB
T ss_pred             ccccccccccCccccccccccceeecccCCCcccChhHCCCCCCCEEEecCCCC
Confidence            88888776554  35667789999999999988998888889999999999875

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.77  E-value=5.1e-18  Score=102.56  Aligned_cols=126  Identities=25%  Similarity=0.283  Sum_probs=97.2

Q ss_pred             CCCcccEEEcCCCcccccCcccccCCCcccEEEccCCccccccchhhhccCCCCEEEccCCcCcCCCChHhhhcCccceE
Q 039528            3 ELKNLFELNLKGNNVEGHLPNCLKYLSHLKVFDISQNQLSGSLSSTITSLTSLEYLDLSYNNFEGPCPLSLLAHHSKLEV   82 (136)
Q Consensus         3 ~l~~L~~l~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~~l~~   82 (136)
                      .+++|++|++++|.+++..  .+.++++|++|++++|.+...  ..+..++.|+.+++.++.... .+  .+..+++|+.
T Consensus        60 ~l~nL~~L~Ls~N~l~~~~--~l~~l~~L~~L~l~~n~~~~~--~~l~~l~~L~~L~l~~~~~~~-~~--~~~~l~~L~~  132 (199)
T d2omxa2          60 YLNNLTQINFSNNQLTDIT--PLKNLTKLVDILMNNNQIADI--TPLANLTNLTGLTLFNNQITD-ID--PLKNLTNLNR  132 (199)
T ss_dssp             GCTTCCEEECCSSCCCCCG--GGTTCTTCCEEECCSSCCCCC--GGGTTCTTCSEEECCSSCCCC-CG--GGTTCTTCSE
T ss_pred             cCCCcCcCccccccccCcc--cccCCcccccccccccccccc--ccccccccccccccccccccc-cc--ccchhhhhHH
Confidence            4677888888888887532  277888888888888877532  246778888888888777763 22  2667888999


Q ss_pred             EEeccceeeeccCCCCCccccEEEcCCCCCCCCChhhhcCCCCcEEEcCCCcCC
Q 039528           83 LVLSSTILVKTENFLPTFQLKELGLANCSLNVVPTFLLHQYDLKYLDLSHNNLV  136 (136)
Q Consensus        83 l~l~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~L~~l~l~~n~l~  136 (136)
                      +++++|.+...+.+...++++.+++.+|.++.++ .++.+++|+.|++++|.++
T Consensus       133 L~l~~n~l~~~~~l~~~~~L~~L~l~~n~l~~l~-~l~~l~~L~~L~ls~N~i~  185 (199)
T d2omxa2         133 LELSSNTISDISALSGLTSLQQLNFSSNQVTDLK-PLANLTTLERLDISSNKVS  185 (199)
T ss_dssp             EECCSSCCCCCGGGTTCTTCSEEECCSSCCCCCG-GGTTCTTCCEEECCSSCCC
T ss_pred             hhhhhhhhcccccccccccccccccccccccCCc-cccCCCCCCEEECCCCCCC
Confidence            9998888777666777788999999999997775 4788999999999999874

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.77  E-value=6.2e-19  Score=103.41  Aligned_cols=124  Identities=19%  Similarity=0.184  Sum_probs=104.0

Q ss_pred             CCCcccEEEcCCCcccccCcccccCCCcccEEEccCCccccccchhhhccCCCCEEEccCCcCcCCCChHhhhcCccceE
Q 039528            3 ELKNLFELNLKGNNVEGHLPNCLKYLSHLKVFDISQNQLSGSLSSTITSLTSLEYLDLSYNNFEGPCPLSLLAHHSKLEV   82 (136)
Q Consensus         3 ~l~~L~~l~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~~l~~   82 (136)
                      ++..+++|++++|.++ .++..+..+++|++|++++|.++..  +.+..+++|++|++++|+++ .++...+..++++++
T Consensus        16 n~~~lr~L~L~~n~I~-~i~~~~~~l~~L~~L~Ls~N~i~~l--~~~~~l~~L~~L~ls~N~i~-~l~~~~~~~l~~L~~   91 (162)
T d1a9na_          16 NAVRDRELDLRGYKIP-VIENLGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRIC-RIGEGLDQALPDLTE   91 (162)
T ss_dssp             CTTSCEEEECTTSCCC-SCCCGGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCC-EECSCHHHHCTTCCE
T ss_pred             CcCcCcEEECCCCCCC-ccCccccccccCCEEECCCCCCCcc--CCcccCcchhhhhccccccc-CCCcccccccccccc
Confidence            4567899999999999 4567678899999999999999843  45788999999999999998 455455778999999


Q ss_pred             EEeccceeeecc---CCCCCccccEEEcCCCCCCCCCh----hhhcCCCCcEEEc
Q 039528           83 LVLSSTILVKTE---NFLPTFQLKELGLANCSLNVVPT----FLLHQYDLKYLDL  130 (136)
Q Consensus        83 l~l~~~~~~~~~---~~~~~~~L~~l~l~~n~~~~~~~----~~~~~~~L~~l~l  130 (136)
                      +++++|.+.+.+   .+..+++|+++++++|.++..|.    .++.+++|++||-
T Consensus        92 L~L~~N~i~~~~~l~~l~~l~~L~~L~l~~N~i~~~~~~r~~~i~~lp~L~~LD~  146 (162)
T d1a9na_          92 LILTNNSLVELGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLDF  146 (162)
T ss_dssp             EECCSCCCCCGGGGGGGGGCTTCCEEECCSSGGGGSTTHHHHHHHHCTTCSEETT
T ss_pred             ceeccccccccccccccccccccchhhcCCCccccccchHHHHHHHCCCcCeeCC
Confidence            999999886654   34667799999999999977774    5788999999874

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.77  E-value=4.6e-18  Score=107.73  Aligned_cols=134  Identities=23%  Similarity=0.255  Sum_probs=113.5

Q ss_pred             CCCCCcccEEEcCCCcccccCcccccCCCcccEEEccCCccccccchhhhccCCCCEEEccCCcCcCCCChHhhhcCccc
Q 039528            1 LCELKNLFELNLKGNNVEGHLPNCLKYLSHLKVFDISQNQLSGSLSSTITSLTSLEYLDLSYNNFEGPCPLSLLAHHSKL   80 (136)
Q Consensus         1 ~~~l~~L~~l~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~~l   80 (136)
                      |.++++|+++++++|.+....+..+.....|+.+++++|.++++.+..+..+.+++.|++.+|.+. .++...+..+++|
T Consensus       101 ~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~l~l~~N~l~~i~~~~f~~~~~L~~L~l~~N~l~-~l~~~~f~~l~~L  179 (284)
T d1ozna_         101 FHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRIS-SVPERAFRGLHSL  179 (284)
T ss_dssp             TTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-EECTTTTTTCTTC
T ss_pred             hcccccCCEEecCCcccccccccccchhcccchhhhccccccccChhHhccccchhhcccccCccc-ccchhhhcccccc
Confidence            356788999999999988666777888899999999999998777778888999999999999997 4555668889999


Q ss_pred             eEEEeccceeeecc--CCCCCccccEEEcCCCCCCCCC-hhhhcCCCCcEEEcCCCcC
Q 039528           81 EVLVLSSTILVKTE--NFLPTFQLKELGLANCSLNVVP-TFLLHQYDLKYLDLSHNNL  135 (136)
Q Consensus        81 ~~l~l~~~~~~~~~--~~~~~~~L~~l~l~~n~~~~~~-~~~~~~~~L~~l~l~~n~l  135 (136)
                      +.+++.+|.+....  .+..++++++|++++|.+..++ ..++.+++|+++++++|++
T Consensus       180 ~~l~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~i~~~~~~~~~~~~~L~~L~l~~N~l  237 (284)
T d1ozna_         180 DRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPW  237 (284)
T ss_dssp             CEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCE
T ss_pred             chhhhhhccccccChhHhhhhhhcccccccccccccccccccccccccCEEEecCCCC
Confidence            99999998776553  5677789999999999996666 5788999999999999976

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.76  E-value=8.3e-18  Score=101.08  Aligned_cols=125  Identities=22%  Similarity=0.288  Sum_probs=101.1

Q ss_pred             ccEEEcCCCcccccCcccccCCCcccEEEccCCcccc-ccchhhhccCCCCEEEccCCcCcCCCChHhhhcCccceEEEe
Q 039528            7 LFELNLKGNNVEGHLPNCLKYLSHLKVFDISQNQLSG-SLSSTITSLTSLEYLDLSYNNFEGPCPLSLLAHHSKLEVLVL   85 (136)
Q Consensus         7 L~~l~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~-~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~~l~~l~l   85 (136)
                      .+.++.+++.++ .+|..+.  +.+++|++++|.++. ..+..|..+++|++|++++|.+.. .+...+..+++|+++++
T Consensus        10 ~~~v~Cs~~~L~-~iP~~lp--~~l~~L~Ls~N~i~~~~~~~~f~~l~~L~~L~L~~N~i~~-~~~~~~~~~~~L~~L~L   85 (192)
T d1w8aa_          10 GTTVDCTGRGLK-EIPRDIP--LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTG-IEPNAFEGASHIQELQL   85 (192)
T ss_dssp             TTEEECTTSCCS-SCCSCCC--TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCC-BCTTTTTTCTTCCEEEC
T ss_pred             CCEEEEeCCCcC-ccCCCCC--CCCCEEEeCCCCCcccccccccCCCceEeeeecccccccc-ccccccccccccceeee
Confidence            467888888888 5665442  578999999999975 345667889999999999999984 44456888899999999


Q ss_pred             ccceeeecc--CCCCCccccEEEcCCCCCCCCCh-hhhcCCCCcEEEcCCCcC
Q 039528           86 SSTILVKTE--NFLPTFQLKELGLANCSLNVVPT-FLLHQYDLKYLDLSHNNL  135 (136)
Q Consensus        86 ~~~~~~~~~--~~~~~~~L~~l~l~~n~~~~~~~-~~~~~~~L~~l~l~~n~l  135 (136)
                      ++|.+...+  ++..++.|++|++++|.++.++. ++..+++|+++++++|.+
T Consensus        86 s~N~l~~l~~~~F~~l~~L~~L~L~~N~l~~i~~~~f~~l~~L~~l~L~~N~~  138 (192)
T d1w8aa_          86 GENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPF  138 (192)
T ss_dssp             CSCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCB
T ss_pred             ccccccccCHHHHhCCCcccccccCCccccccCHHHhcCCccccccccccccc
Confidence            999886664  56778899999999999977764 678899999999999876

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.73  E-value=3.3e-17  Score=102.92  Aligned_cols=128  Identities=30%  Similarity=0.298  Sum_probs=88.8

Q ss_pred             CcccEEEcCCCcccccCcccccCCCcccEEEccCCccccccchhhhccCCCCEEEccCCcCcCCCChHhhhcCccceEEE
Q 039528            5 KNLFELNLKGNNVEGHLPNCLKYLSHLKVFDISQNQLSGSLSSTITSLTSLEYLDLSYNNFEGPCPLSLLAHHSKLEVLV   84 (136)
Q Consensus         5 ~~L~~l~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~~l~~l~   84 (136)
                      +.+++|++++|.+++..+..|.++++|++|++++|.++. ++ .+..+++|++|++++|++++. +. .+..+++|+.++
T Consensus        31 ~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~L~~N~l~~-l~-~~~~l~~L~~L~Ls~N~l~~~-~~-~~~~l~~L~~L~  106 (266)
T d1p9ag_          31 KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTK-LQ-VDGTLPVLGTLDLSHNQLQSL-PL-LGQTLPALTVLD  106 (266)
T ss_dssp             TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCE-EE-CCSCCTTCCEEECCSSCCSSC-CC-CTTTCTTCCEEE
T ss_pred             cCCCEEECcCCcCCCcCHHHhhccccccccccccccccc-cc-ccccccccccccccccccccc-cc-cccccccccccc
Confidence            358888888888886656778888888888888888863 32 245677788888888877632 32 355566666666


Q ss_pred             eccceeee------------------------cc--CCCCCccccEEEcCCCCCCCCC-hhhhcCCCCcEEEcCCCcCC
Q 039528           85 LSSTILVK------------------------TE--NFLPTFQLKELGLANCSLNVVP-TFLLHQYDLKYLDLSHNNLV  136 (136)
Q Consensus        85 l~~~~~~~------------------------~~--~~~~~~~L~~l~l~~n~~~~~~-~~~~~~~~L~~l~l~~n~l~  136 (136)
                      ++++.+..                        .+  .+..+..++.+++++|.++.++ ..+..+++|++|++++|.++
T Consensus       107 l~~~~~~~~~~~~~~~l~~l~~L~l~~n~l~~l~~~~~~~l~~l~~l~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~L~  185 (266)
T d1p9ag_         107 VSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLY  185 (266)
T ss_dssp             CCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCC
T ss_pred             ccccccceeeccccccccccccccccccccceeccccccccccchhcccccccccccCccccccccccceeecccCCCc
Confidence            66644322                        21  2234457888888888886655 46778888999999888764

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.73  E-value=3.8e-17  Score=91.68  Aligned_cols=115  Identities=23%  Similarity=0.258  Sum_probs=93.0

Q ss_pred             cEEEcCCCcccccCcccccCCCcccEEEccCCccccccchhhhccCCCCEEEccCCcCcCCCChHhhhcCccceEEEecc
Q 039528            8 FELNLKGNNVEGHLPNCLKYLSHLKVFDISQNQLSGSLSSTITSLTSLEYLDLSYNNFEGPCPLSLLAHHSKLEVLVLSS   87 (136)
Q Consensus         8 ~~l~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~~l~~l~l~~   87 (136)
                      ++|++++|.++. ++ .+..+++|++|++++|.++ .+|..+..+++|++|++++|.++ .++ + +..+++|+++++++
T Consensus         1 R~L~Ls~n~l~~-l~-~l~~l~~L~~L~ls~N~l~-~lp~~~~~l~~L~~L~l~~N~i~-~l~-~-~~~l~~L~~L~l~~   74 (124)
T d1dcea3           1 RVLHLAHKDLTV-LC-HLEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALE-NVD-G-VANLPRLQELLLCN   74 (124)
T ss_dssp             SEEECTTSCCSS-CC-CGGGGTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCC-CCG-G-GTTCSSCCEEECCS
T ss_pred             CEEEcCCCCCCC-Cc-ccccCCCCCEEECCCCccC-cchhhhhhhhccccccccccccc-ccC-c-cccccccCeEECCC
Confidence            579999999984 44 4789999999999999998 56778899999999999999998 454 3 78899999999999


Q ss_pred             ceeeecc---CCCCCccccEEEcCCCCCCCCC---h-hhhcCCCCcEE
Q 039528           88 TILVKTE---NFLPTFQLKELGLANCSLNVVP---T-FLLHQYDLKYL  128 (136)
Q Consensus        88 ~~~~~~~---~~~~~~~L~~l~l~~n~~~~~~---~-~~~~~~~L~~l  128 (136)
                      |.+...+   .+..+++|+.+++++|+++..+   . .+..+++++.+
T Consensus        75 N~i~~~~~~~~l~~~~~L~~L~l~~N~i~~~~~~~~~l~~~lp~L~~L  122 (124)
T d1dcea3          75 NRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSI  122 (124)
T ss_dssp             SCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCTTCSEE
T ss_pred             CccCCCCCchhhcCCCCCCEEECCCCcCCcCccHHHHHHHHCcCcceE
Confidence            9887664   3466678999999999984433   2 45567877765

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.72  E-value=5.9e-17  Score=98.57  Aligned_cols=125  Identities=26%  Similarity=0.305  Sum_probs=76.0

Q ss_pred             CCCcccEEEcCCCcccccCcccccCCCcccEEEccCCccccccchhhhccCCCCEEEccCCcCcCCCChHhhhcCccceE
Q 039528            3 ELKNLFELNLKGNNVEGHLPNCLKYLSHLKVFDISQNQLSGSLSSTITSLTSLEYLDLSYNNFEGPCPLSLLAHHSKLEV   82 (136)
Q Consensus         3 ~l~~L~~l~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~~l~~   82 (136)
                      .+++|++|++++|.+++. + .+..+++|++|++++|++++ ++ .+..+++|+.+++.++... .++  .+..++.++.
T Consensus        66 ~l~~L~~L~L~~n~i~~l-~-~~~~l~~L~~L~l~~n~i~~-l~-~l~~l~~L~~L~l~~~~~~-~~~--~l~~l~~l~~  138 (210)
T d1h6ta2          66 YLPNVTKLFLNGNKLTDI-K-PLANLKNLGWLFLDENKVKD-LS-SLKDLKKLKSLSLEHNGIS-DIN--GLVHLPQLES  138 (210)
T ss_dssp             GCTTCCEEECCSSCCCCC-G-GGTTCTTCCEEECCSSCCCC-GG-GGTTCTTCCEEECTTSCCC-CCG--GGGGCTTCCE
T ss_pred             hCCCCCEEeCCCccccCc-c-ccccCccccccccccccccc-cc-ccccccccccccccccccc-ccc--cccccccccc
Confidence            466777777777777642 2 35667777777777777763 22 4566677777777766664 222  2445555566


Q ss_pred             EEeccceeeeccCCCCCccccEEEcCCCCCCCCChhhhcCCCCcEEEcCCCcC
Q 039528           83 LVLSSTILVKTENFLPTFQLKELGLANCSLNVVPTFLLHQYDLKYLDLSHNNL  135 (136)
Q Consensus        83 l~l~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~L~~l~l~~n~l  135 (136)
                      +++.+|.+.+......+++|+++++++|.++.++. ++.+++|+.|++++|.+
T Consensus       139 l~~~~n~l~~~~~~~~l~~L~~l~l~~n~l~~i~~-l~~l~~L~~L~Ls~N~i  190 (210)
T d1h6ta2         139 LYLGNNKITDITVLSRLTKLDTLSLEDNQISDIVP-LAGLTKLQNLYLSKNHI  190 (210)
T ss_dssp             EECCSSCCCCCGGGGGCTTCSEEECCSSCCCCCGG-GTTCTTCCEEECCSSCC
T ss_pred             ccccccccccccccccccccccccccccccccccc-ccCCCCCCEEECCCCCC
Confidence            66555555444434445566666666666655542 55666666666666655

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=99.72  E-value=3e-17  Score=105.19  Aligned_cols=134  Identities=28%  Similarity=0.361  Sum_probs=83.5

Q ss_pred             CCCCcccEEEcCC-CcccccCcccccCCCcccEEEccCCccccccchh------------------------hhccCCCC
Q 039528            2 CELKNLFELNLKG-NNVEGHLPNCLKYLSHLKVFDISQNQLSGSLSST------------------------ITSLTSLE   56 (136)
Q Consensus         2 ~~l~~L~~l~l~~-~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~------------------------~~~~~~l~   56 (136)
                      .++++|++|++++ |.+.+.+|..+.++++|++|++++|.+.+..+..                        +..++.++
T Consensus        73 ~~L~~L~~L~Ls~~N~l~g~iP~~i~~L~~L~~L~Ls~N~l~~~~~~~~~~~~~L~~l~l~~N~~~~~~p~~l~~l~~L~  152 (313)
T d1ogqa_          73 ANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLV  152 (313)
T ss_dssp             GGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCC
T ss_pred             hcCccccccccccccccccccccccccccccchhhhccccccccccccccchhhhcccccccccccccCchhhccCcccc
Confidence            3567788888875 6777777777888888888888777665444443                        44444555


Q ss_pred             EEEccCCcCcCCCChHhhhcCccc-eEEEeccceee--------------------------------------------
Q 039528           57 YLDLSYNNFEGPCPLSLLAHHSKL-EVLVLSSTILV--------------------------------------------   91 (136)
Q Consensus        57 ~l~l~~~~~~~~~~~~~~~~~~~l-~~l~l~~~~~~--------------------------------------------   91 (136)
                      ++++++|.+.+.+|.. +..+..+ +.+++.+|.+.                                            
T Consensus       153 ~l~l~~n~l~~~ip~~-~~~l~~l~~~l~~~~n~l~~~~~~~~~~l~~~~l~l~~~~~~~~~~~~~~~~~~l~~l~~~~~  231 (313)
T d1ogqa_         153 GITFDGNRISGAIPDS-YGSFSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKN  231 (313)
T ss_dssp             EEECCSSCCEEECCGG-GGCCCTTCCEEECCSSEEEEECCGGGGGCCCSEEECCSSEEEECCGGGCCTTSCCSEEECCSS
T ss_pred             eeeccccccccccccc-ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            5555555444333322 2222221 33332222110                                            


Q ss_pred             ----eccCCCCCccccEEEcCCCCC-CCCChhhhcCCCCcEEEcCCCcCC
Q 039528           92 ----KTENFLPTFQLKELGLANCSL-NVVPTFLLHQYDLKYLDLSHNNLV  136 (136)
Q Consensus        92 ----~~~~~~~~~~L~~l~l~~n~~-~~~~~~~~~~~~L~~l~l~~n~l~  136 (136)
                          ..+.+...++++.|++++|++ +.+|..++++++|++|++++|.++
T Consensus       232 ~l~~~~~~~~~~~~L~~L~Ls~N~l~g~iP~~l~~L~~L~~L~Ls~N~l~  281 (313)
T d1ogqa_         232 SLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLC  281 (313)
T ss_dssp             EECCBGGGCCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEE
T ss_pred             cccccccccccccccccccCccCeecccCChHHhCCCCCCEEECcCCccc
Confidence                011223455788999999999 589999999999999999999763

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.72  E-value=6.7e-17  Score=90.66  Aligned_cols=101  Identities=30%  Similarity=0.334  Sum_probs=85.3

Q ss_pred             cEEEccCCccccccchhhhccCCCCEEEccCCcCcCCCChHhhhcCccceEEEeccceeeeccCCCCCccccEEEcCCCC
Q 039528           32 KVFDISQNQLSGSLSSTITSLTSLEYLDLSYNNFEGPCPLSLLAHHSKLEVLVLSSTILVKTENFLPTFQLKELGLANCS  111 (136)
Q Consensus        32 ~~L~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~L~~l~l~~n~  111 (136)
                      ++|++++|+++ .++ .+..+..|++|++++|+++ .+|.. +..+++|+.+++++|.+...+.+..+++|+++++++|+
T Consensus         1 R~L~Ls~n~l~-~l~-~l~~l~~L~~L~ls~N~l~-~lp~~-~~~l~~L~~L~l~~N~i~~l~~~~~l~~L~~L~l~~N~   76 (124)
T d1dcea3           1 RVLHLAHKDLT-VLC-HLEQLLLVTHLDLSHNRLR-ALPPA-LAALRCLEVLQASDNALENVDGVANLPRLQELLLCNNR   76 (124)
T ss_dssp             SEEECTTSCCS-SCC-CGGGGTTCCEEECCSSCCC-CCCGG-GGGCTTCCEEECCSSCCCCCGGGTTCSSCCEEECCSSC
T ss_pred             CEEEcCCCCCC-CCc-ccccCCCCCEEECCCCccC-cchhh-hhhhhcccccccccccccccCccccccccCeEECCCCc
Confidence            57899999997 343 4788999999999999997 56654 77899999999999998888778888899999999999


Q ss_pred             CCCCCh--hhhcCCCCcEEEcCCCcCC
Q 039528          112 LNVVPT--FLLHQYDLKYLDLSHNNLV  136 (136)
Q Consensus       112 ~~~~~~--~~~~~~~L~~l~l~~n~l~  136 (136)
                      +++++.  .++.+++|+.+++++|+++
T Consensus        77 i~~~~~~~~l~~~~~L~~L~l~~N~i~  103 (124)
T d1dcea3          77 LQQSAAIQPLVSCPRLVLLNLQGNSLC  103 (124)
T ss_dssp             CCSSSTTGGGGGCTTCCEEECTTSGGG
T ss_pred             cCCCCCchhhcCCCCCCEEECCCCcCC
Confidence            977763  6788999999999998863

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.70  E-value=7.3e-18  Score=101.34  Aligned_cols=108  Identities=21%  Similarity=0.243  Sum_probs=94.7

Q ss_pred             CcccEEEcCCCcccccC-cccccCCCcccEEEccCCccccccchhhhccCCCCEEEccCCcCcCCCChHhhhcCccceEE
Q 039528            5 KNLFELNLKGNNVEGHL-PNCLKYLSHLKVFDISQNQLSGSLSSTITSLTSLEYLDLSYNNFEGPCPLSLLAHHSKLEVL   83 (136)
Q Consensus         5 ~~L~~l~l~~~~l~~~~-~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~~l~~l   83 (136)
                      +++++|++++|.++... +..|.++++|++|++++|.+....++.+..+++|++|++++|+++ .++...+..+++|++|
T Consensus        29 ~~l~~L~Ls~N~i~~~~~~~~f~~l~~L~~L~L~~N~i~~~~~~~~~~~~~L~~L~Ls~N~l~-~l~~~~F~~l~~L~~L  107 (192)
T d1w8aa_          29 LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIK-EISNKMFLGLHQLKTL  107 (192)
T ss_dssp             TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCCCC-EECSSSSTTCTTCCEE
T ss_pred             CCCCEEEeCCCCCcccccccccCCCceEeeeeccccccccccccccccccccceeeecccccc-ccCHHHHhCCCccccc
Confidence            46899999999998644 567889999999999999999888889999999999999999998 4555668899999999


Q ss_pred             Eeccceeeecc--CCCCCccccEEEcCCCCCC
Q 039528           84 VLSSTILVKTE--NFLPTFQLKELGLANCSLN  113 (136)
Q Consensus        84 ~l~~~~~~~~~--~~~~~~~L~~l~l~~n~~~  113 (136)
                      ++++|.+...+  ++..+++|+++++++|.+.
T Consensus       108 ~L~~N~l~~i~~~~f~~l~~L~~l~L~~N~~~  139 (192)
T d1w8aa_         108 NLYDNQISCVMPGSFEHLNSLTSLNLASNPFN  139 (192)
T ss_dssp             ECCSSCCCEECTTSSTTCTTCCEEECTTCCBC
T ss_pred             ccCCccccccCHHHhcCCcccccccccccccc
Confidence            99999887664  5678889999999999883

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.69  E-value=4.6e-16  Score=98.43  Aligned_cols=135  Identities=22%  Similarity=0.204  Sum_probs=102.6

Q ss_pred             CCCCCcccEEEcCCCcccc-------------------------cCcccccCCCcccEEEccCCccccccchhhhccCCC
Q 039528            1 LCELKNLFELNLKGNNVEG-------------------------HLPNCLKYLSHLKVFDISQNQLSGSLSSTITSLTSL   55 (136)
Q Consensus         1 ~~~l~~L~~l~l~~~~l~~-------------------------~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l   55 (136)
                      |.+++.|+++++++|.+..                         ..+..+.++++|++|++++|.+....+..+....+|
T Consensus        52 f~~l~~L~~L~ls~n~l~~i~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L  131 (284)
T d1ozna_          52 FRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAAL  131 (284)
T ss_dssp             TTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTC
T ss_pred             hhccccccccccccccccccccccccccccccccccccccccccccchhhcccccCCEEecCCcccccccccccchhccc
Confidence            3456777777777776532                         224456677888888888888775566677778888


Q ss_pred             CEEEccCCcCcCCCChHhhhcCccceEEEeccceeeecc--CCCCCccccEEEcCCCCCCC-CChhhhcCCCCcEEEcCC
Q 039528           56 EYLDLSYNNFEGPCPLSLLAHHSKLEVLVLSSTILVKTE--NFLPTFQLKELGLANCSLNV-VPTFLLHQYDLKYLDLSH  132 (136)
Q Consensus        56 ~~l~l~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~--~~~~~~~L~~l~l~~n~~~~-~~~~~~~~~~L~~l~l~~  132 (136)
                      +.+++.+|.++ .++...++.+++++++++++|.+...+  ++..+++|+.+++.+|.++. .|..++.++++++|++++
T Consensus       132 ~~l~l~~N~l~-~i~~~~f~~~~~L~~L~l~~N~l~~l~~~~f~~l~~L~~l~l~~N~l~~i~~~~f~~l~~L~~L~l~~  210 (284)
T d1ozna_         132 QYLYLQDNALQ-ALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFA  210 (284)
T ss_dssp             CEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred             chhhhcccccc-ccChhHhccccchhhcccccCcccccchhhhccccccchhhhhhccccccChhHhhhhhhcccccccc
Confidence            88999888887 455456778888999999998776553  56677789999999999854 467888899999999999


Q ss_pred             CcCC
Q 039528          133 NNLV  136 (136)
Q Consensus       133 n~l~  136 (136)
                      |.++
T Consensus       211 N~i~  214 (284)
T d1ozna_         211 NNLS  214 (284)
T ss_dssp             SCCS
T ss_pred             cccc
Confidence            8764

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.69  E-value=4e-16  Score=99.54  Aligned_cols=60  Identities=28%  Similarity=0.275  Sum_probs=39.9

Q ss_pred             CccceEEEeccceeeecc--CCCCCccccEEEcCCCCCCCCChhhhcCCCCcEEEcCCCcCC
Q 039528           77 HSKLEVLVLSSTILVKTE--NFLPTFQLKELGLANCSLNVVPTFLLHQYDLKYLDLSHNNLV  136 (136)
Q Consensus        77 ~~~l~~l~l~~~~~~~~~--~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~L~~l~l~~n~l~  136 (136)
                      ++.++.+++++|.+...+  .+..+++|++|++++|+++.+|..+..+++|++|++++|.++
T Consensus       194 ~~~l~~L~~s~n~l~~~~~~~~~~l~~L~~L~L~~N~L~~lp~~l~~l~~L~~L~Ls~N~i~  255 (305)
T d1xkua_         194 LNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVKVPGGLADHKYIQVVYLHNNNIS  255 (305)
T ss_dssp             CTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCSSCCTTTTTCSSCCEEECCSSCCC
T ss_pred             cccccccccccccccccccccccccccceeeecccccccccccccccccCCCEEECCCCccC
Confidence            334444444444433332  234455788888888888888888888888888888888764

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.68  E-value=4e-16  Score=94.84  Aligned_cols=123  Identities=28%  Similarity=0.312  Sum_probs=105.1

Q ss_pred             CCCCcccEEEcCCCcccccCcccccCCCcccEEEccCCccccccchhhhccCCCCEEEccCCcCcCCCChHhhhcCccce
Q 039528            2 CELKNLFELNLKGNNVEGHLPNCLKYLSHLKVFDISQNQLSGSLSSTITSLTSLEYLDLSYNNFEGPCPLSLLAHHSKLE   81 (136)
Q Consensus         2 ~~l~~L~~l~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~~l~   81 (136)
                      ..+++|+.|++++|.+++ ++ .+..+++|+.+++++|.+..  ...+..++.++.+++.+|.+++ .+  ....+++|+
T Consensus        87 ~~l~~L~~L~l~~n~i~~-l~-~l~~l~~L~~L~l~~~~~~~--~~~l~~l~~l~~l~~~~n~l~~-~~--~~~~l~~L~  159 (210)
T d1h6ta2          87 ANLKNLGWLFLDENKVKD-LS-SLKDLKKLKSLSLEHNGISD--INGLVHLPQLESLYLGNNKITD-IT--VLSRLTKLD  159 (210)
T ss_dssp             TTCTTCCEEECCSSCCCC-GG-GGTTCTTCCEEECTTSCCCC--CGGGGGCTTCCEEECCSSCCCC-CG--GGGGCTTCS
T ss_pred             ccCccccccccccccccc-cc-cccccccccccccccccccc--cccccccccccccccccccccc-cc--ccccccccc
Confidence            468899999999999985 44 57889999999999998763  2467889999999999999873 32  366789999


Q ss_pred             EEEeccceeeeccCCCCCccccEEEcCCCCCCCCChhhhcCCCCcEEEcCC
Q 039528           82 VLVLSSTILVKTENFLPTFQLKELGLANCSLNVVPTFLLHQYDLKYLDLSH  132 (136)
Q Consensus        82 ~l~l~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~L~~l~l~~  132 (136)
                      ++++++|.+.+...+..+++|+.|++++|.+++++ .+..+++|++|++++
T Consensus       160 ~l~l~~n~l~~i~~l~~l~~L~~L~Ls~N~i~~l~-~l~~l~~L~~L~Ls~  209 (210)
T d1h6ta2         160 TLSLEDNQISDIVPLAGLTKLQNLYLSKNHISDLR-ALAGLKNLDVLELFS  209 (210)
T ss_dssp             EEECCSSCCCCCGGGTTCTTCCEEECCSSCCCBCG-GGTTCTTCSEEEEEE
T ss_pred             ccccccccccccccccCCCCCCEEECCCCCCCCCh-hhcCCCCCCEEEccC
Confidence            99999998887777778889999999999998886 689999999999874

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.68  E-value=7.9e-16  Score=94.46  Aligned_cols=129  Identities=24%  Similarity=0.306  Sum_probs=84.9

Q ss_pred             CCCcccEEEcCCCcccccCcccccCCCcccEEEccCCccccccchhhhccCCCCEEEccCCcCcCCC-------------
Q 039528            3 ELKNLFELNLKGNNVEGHLPNCLKYLSHLKVFDISQNQLSGSLSSTITSLTSLEYLDLSYNNFEGPC-------------   69 (136)
Q Consensus         3 ~l~~L~~l~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~-------------   69 (136)
                      .+++|+++++++|.+.+..  .+..++.++++++++|.++..  ..+..++.|++++++++...+..             
T Consensus        61 ~l~~L~~L~ls~n~i~~~~--~l~~l~~l~~l~~~~n~~~~i--~~l~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~l~~  136 (227)
T d1h6ua2          61 YLNNLIGLELKDNQITDLA--PLKNLTKITELELSGNPLKNV--SAIAGLQSIKTLDLTSTQITDVTPLAGLSNLQVLYL  136 (227)
T ss_dssp             GCTTCCEEECCSSCCCCCG--GGTTCCSCCEEECCSCCCSCC--GGGTTCTTCCEEECTTSCCCCCGGGTTCTTCCEEEC
T ss_pred             cCCCCcEeecCCceeeccc--ccccccccccccccccccccc--ccccccccccccccccccccccchhccccchhhhhc
Confidence            4666777777777766432  256666777777766665422  23555666666666665543110             


Q ss_pred             ------ChHhhhcCccceEEEeccceeeeccCCCCCccccEEEcCCCCCCCCChhhhcCCCCcEEEcCCCcCC
Q 039528           70 ------PLSLLAHHSKLEVLVLSSTILVKTENFLPTFQLKELGLANCSLNVVPTFLLHQYDLKYLDLSHNNLV  136 (136)
Q Consensus        70 ------~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~L~~l~l~~n~l~  136 (136)
                            ....+..+++++++++++|.+.+...+..+++|+.|++++|.+++++. +..+++|++|++++|.++
T Consensus       137 ~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~l~~l~~L~~L~Ls~n~l~~l~~-l~~l~~L~~L~Ls~N~lt  208 (227)
T d1h6ua2         137 DLNQITNISPLAGLTNLQYLSIGNAQVSDLTPLANLSKLTTLKADDNKISDISP-LASLPNLIEVHLKNNQIS  208 (227)
T ss_dssp             CSSCCCCCGGGGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCCCGG-GGGCTTCCEEECTTSCCC
T ss_pred             hhhhhchhhhhccccccccccccccccccchhhcccccceecccCCCccCCChh-hcCCCCCCEEECcCCcCC
Confidence                  111244566778888877777666566677788888888888877653 778888899998888764

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=99.67  E-value=1.1e-16  Score=102.47  Aligned_cols=129  Identities=26%  Similarity=0.363  Sum_probs=109.1

Q ss_pred             cccEEEcCCCcccc--cCcccccCCCcccEEEccC-CccccccchhhhccCCCCEEEccCCcCcCCCChHhhhcCccceE
Q 039528            6 NLFELNLKGNNVEG--HLPNCLKYLSHLKVFDISQ-NQLSGSLSSTITSLTSLEYLDLSYNNFEGPCPLSLLAHHSKLEV   82 (136)
Q Consensus         6 ~L~~l~l~~~~l~~--~~~~~~~~l~~L~~L~l~~-~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~~l~~   82 (136)
                      +++.|+++++.+.+  .+|..+.++++|++|++++ |.+.+.+|..+..+++|++|++++|++.+..+ ..+..+..|+.
T Consensus        51 ~v~~L~L~~~~l~g~~~lp~~l~~L~~L~~L~Ls~~N~l~g~iP~~i~~L~~L~~L~Ls~N~l~~~~~-~~~~~~~~L~~  129 (313)
T d1ogqa_          51 RVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIP-DFLSQIKTLVT  129 (313)
T ss_dssp             CEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECC-GGGGGCTTCCE
T ss_pred             EEEEEECCCCCCCCCCCCChHHhcCccccccccccccccccccccccccccccchhhhcccccccccc-ccccchhhhcc
Confidence            57889999999987  4788999999999999987 78888899999999999999999999986555 44778899999


Q ss_pred             EEeccceeeec--cCCCCCccccEEEcCCCCC-CCCChhhhcCCCC-cEEEcCCCcC
Q 039528           83 LVLSSTILVKT--ENFLPTFQLKELGLANCSL-NVVPTFLLHQYDL-KYLDLSHNNL  135 (136)
Q Consensus        83 l~l~~~~~~~~--~~~~~~~~L~~l~l~~n~~-~~~~~~~~~~~~L-~~l~l~~n~l  135 (136)
                      +++.+|.....  ..+..++.++.+++++|.+ +.+|..++.+..+ +.++++.|.+
T Consensus       130 l~l~~N~~~~~~p~~l~~l~~L~~l~l~~n~l~~~ip~~~~~l~~l~~~l~~~~n~l  186 (313)
T d1ogqa_         130 LDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRL  186 (313)
T ss_dssp             EECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEE
T ss_pred             cccccccccccCchhhccCcccceeeccccccccccccccccccccccccccccccc
Confidence            99999876433  2456777999999999999 6889888888775 7888888765

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.66  E-value=1.4e-15  Score=91.72  Aligned_cols=125  Identities=21%  Similarity=0.291  Sum_probs=105.9

Q ss_pred             CCcccEEEcCCCcccccCcccccCCCcccEEEccCCccccccchhhhccCCCCEEEccCCcCcCCCChHhhhcCccceEE
Q 039528            4 LKNLFELNLKGNNVEGHLPNCLKYLSHLKVFDISQNQLSGSLSSTITSLTSLEYLDLSYNNFEGPCPLSLLAHHSKLEVL   83 (136)
Q Consensus         4 l~~L~~l~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~~l~~l   83 (136)
                      +++++.|+++++.+.. + +.+..+++|++|++++|.+++..  .+..+++|++|++++|.+. ..+  .+..++.|+.+
T Consensus        39 l~~l~~L~l~~~~i~~-l-~~l~~l~nL~~L~Ls~N~l~~~~--~l~~l~~L~~L~l~~n~~~-~~~--~l~~l~~L~~L  111 (199)
T d2omxa2          39 LDQVTTLQADRLGIKS-I-DGVEYLNNLTQINFSNNQLTDIT--PLKNLTKLVDILMNNNQIA-DIT--PLANLTNLTGL  111 (199)
T ss_dssp             HTTCCEEECTTSCCCC-C-TTGGGCTTCCEEECCSSCCCCCG--GGTTCTTCCEEECCSSCCC-CCG--GGTTCTTCSEE
T ss_pred             hcCCCEEECCCCCCCC-c-cccccCCCcCcCccccccccCcc--cccCCcccccccccccccc-ccc--ccccccccccc
Confidence            5678999999999985 3 34778999999999999998543  3889999999999999987 444  27789999999


Q ss_pred             EeccceeeeccCCCCCccccEEEcCCCCCCCCChhhhcCCCCcEEEcCCCcCC
Q 039528           84 VLSSTILVKTENFLPTFQLKELGLANCSLNVVPTFLLHQYDLKYLDLSHNNLV  136 (136)
Q Consensus        84 ~l~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~L~~l~l~~n~l~  136 (136)
                      +++++.......+..++.|+.+++++|.+..++ .+..+++++.+++++|.++
T Consensus       112 ~l~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~-~l~~~~~L~~L~l~~n~l~  163 (199)
T d2omxa2         112 TLFNNQITDIDPLKNLTNLNRLELSSNTISDIS-ALSGLTSLQQLNFSSNQVT  163 (199)
T ss_dssp             ECCSSCCCCCGGGTTCTTCSEEECCSSCCCCCG-GGTTCTTCSEEECCSSCCC
T ss_pred             cccccccccccccchhhhhHHhhhhhhhhcccc-ccccccccccccccccccc
Confidence            999988777666777889999999999997765 6888999999999999764

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.63  E-value=7.4e-16  Score=90.11  Aligned_cols=109  Identities=17%  Similarity=0.166  Sum_probs=91.7

Q ss_pred             cccCCCcccEEEccCCccccccchhhhccCCCCEEEccCCcCcCCCChHhhhcCccceEEEeccceeeeccC--CCCCcc
Q 039528           24 CLKYLSHLKVFDISQNQLSGSLSSTITSLTSLEYLDLSYNNFEGPCPLSLLAHHSKLEVLVLSSTILVKTEN--FLPTFQ  101 (136)
Q Consensus        24 ~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~--~~~~~~  101 (136)
                      .+.+..++++|++++|+++. ++..+..++.|++|++++|.++ .++  .+..+++|+++++++|.+...+.  +..++.
T Consensus        13 ~~~n~~~lr~L~L~~n~I~~-i~~~~~~l~~L~~L~Ls~N~i~-~l~--~~~~l~~L~~L~ls~N~i~~l~~~~~~~l~~   88 (162)
T d1a9na_          13 QYTNAVRDRELDLRGYKIPV-IENLGATLDQFDAIDFSDNEIR-KLD--GFPLLRRLKTLLVNNNRICRIGEGLDQALPD   88 (162)
T ss_dssp             EEECTTSCEEEECTTSCCCS-CCCGGGGTTCCSEEECCSSCCC-EEC--CCCCCSSCCEEECCSSCCCEECSCHHHHCTT
T ss_pred             hccCcCcCcEEECCCCCCCc-cCccccccccCCEEECCCCCCC-ccC--CcccCcchhhhhcccccccCCCccccccccc
Confidence            35678899999999999984 4666678999999999999997 454  27789999999999999877653  345779


Q ss_pred             ccEEEcCCCCCCCCCh--hhhcCCCCcEEEcCCCcCC
Q 039528          102 LKELGLANCSLNVVPT--FLLHQYDLKYLDLSHNNLV  136 (136)
Q Consensus       102 L~~l~l~~n~~~~~~~--~~~~~~~L~~l~l~~n~l~  136 (136)
                      ++.|++++|.+++++.  .+..+++|+++++++|+++
T Consensus        89 L~~L~L~~N~i~~~~~l~~l~~l~~L~~L~l~~N~i~  125 (162)
T d1a9na_          89 LTELILTNNSLVELGDLDPLASLKSLTYLCILRNPVT  125 (162)
T ss_dssp             CCEEECCSCCCCCGGGGGGGGGCTTCCEEECCSSGGG
T ss_pred             cccceeccccccccccccccccccccchhhcCCCccc
Confidence            9999999999987764  6889999999999999863

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.62  E-value=4e-15  Score=97.15  Aligned_cols=126  Identities=22%  Similarity=0.317  Sum_probs=86.7

Q ss_pred             CCCcccEEEcCCCcccccCcccccCCCcccEEEccCCcccccc--------------------chhhhccCCCCEEEccC
Q 039528            3 ELKNLFELNLKGNNVEGHLPNCLKYLSHLKVFDISQNQLSGSL--------------------SSTITSLTSLEYLDLSY   62 (136)
Q Consensus         3 ~l~~L~~l~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~--------------------~~~~~~~~~l~~l~l~~   62 (136)
                      .+++++.+++++|.+++..  .+..+++|++++++++.+++..                    ...+..+++++.+++++
T Consensus       239 ~l~~L~~L~l~~n~l~~~~--~~~~~~~L~~L~l~~~~l~~~~~~~~~~~l~~l~~~~n~l~~~~~~~~~~~l~~L~ls~  316 (384)
T d2omza2         239 SLTNLTDLDLANNQISNLA--PLSGLTKLTELKLGANQISNISPLAGLTALTNLELNENQLEDISPISNLKNLTYLTLYF  316 (384)
T ss_dssp             GCTTCSEEECCSSCCCCCG--GGTTCTTCSEEECCSSCCCCCGGGTTCTTCSEEECCSSCCSCCGGGGGCTTCSEEECCS
T ss_pred             cccccchhccccCccCCCC--cccccccCCEeeccCcccCCCCccccccccccccccccccccccccchhcccCeEECCC
Confidence            4567777788777777432  2566777777777776654321                    12345566777777777


Q ss_pred             CcCcCCCChHhhhcCccceEEEeccceeeeccCCCCCccccEEEcCCCCCCCCChhhhcCCCCcEEEcCCCc
Q 039528           63 NNFEGPCPLSLLAHHSKLEVLVLSSTILVKTENFLPTFQLKELGLANCSLNVVPTFLLHQYDLKYLDLSHNN  134 (136)
Q Consensus        63 ~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~L~~l~l~~n~  134 (136)
                      |++++ ++  .+..+++|+.+++++|.+...+.+..+++|++|++++|.++.+++ +.++++|+.|++++|+
T Consensus       317 n~l~~-l~--~l~~l~~L~~L~L~~n~l~~l~~l~~l~~L~~L~l~~N~l~~l~~-l~~l~~L~~L~L~~Na  384 (384)
T d2omza2         317 NNISD-IS--PVSSLTKLQRLFFANNKVSDVSSLANLTNINWLSAGHNQISDLTP-LANLTRITQLGLNDQA  384 (384)
T ss_dssp             SCCSC-CG--GGGGCTTCCEEECCSSCCCCCGGGGGCTTCCEEECCSSCCCBCGG-GTTCTTCSEEECCCEE
T ss_pred             CCCCC-Cc--ccccCCCCCEEECCCCCCCCChhHcCCCCCCEEECCCCcCCCChh-hccCCCCCEeeCCCCc
Confidence            77763 32  266778888888888877666666667788888888888876654 6777888888888763

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.60  E-value=7.2e-15  Score=95.90  Aligned_cols=128  Identities=27%  Similarity=0.376  Sum_probs=100.8

Q ss_pred             CCcccEEEcCCCcccccCcccccCCCcccEEEccCCccccccchhhhccCCCCEEEccCCcCcCCCC-------------
Q 039528            4 LKNLFELNLKGNNVEGHLPNCLKYLSHLKVFDISQNQLSGSLSSTITSLTSLEYLDLSYNNFEGPCP-------------   70 (136)
Q Consensus         4 l~~L~~l~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~-------------   70 (136)
                      .++|+.+++++|.+++ + +.+..+++|+.+++++|.+++..  .+..+++|++++++++.+.+..+             
T Consensus       218 ~~~L~~L~l~~n~l~~-~-~~l~~l~~L~~L~l~~n~l~~~~--~~~~~~~L~~L~l~~~~l~~~~~~~~~~~l~~l~~~  293 (384)
T d2omza2         218 LTNLDELSLNGNQLKD-I-GTLASLTNLTDLDLANNQISNLA--PLSGLTKLTELKLGANQISNISPLAGLTALTNLELN  293 (384)
T ss_dssp             CTTCCEEECCSSCCCC-C-GGGGGCTTCSEEECCSSCCCCCG--GGTTCTTCSEEECCSSCCCCCGGGTTCTTCSEEECC
T ss_pred             cCCCCEEECCCCCCCC-c-chhhcccccchhccccCccCCCC--cccccccCCEeeccCcccCCCCcccccccccccccc
Confidence            5789999999999884 3 46788999999999999987543  37778899999998887753211             


Q ss_pred             ------hHhhhcCccceEEEeccceeeeccCCCCCccccEEEcCCCCCCCCChhhhcCCCCcEEEcCCCcCC
Q 039528           71 ------LSLLAHHSKLEVLVLSSTILVKTENFLPTFQLKELGLANCSLNVVPTFLLHQYDLKYLDLSHNNLV  136 (136)
Q Consensus        71 ------~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~L~~l~l~~n~l~  136 (136)
                            ...+..++.++++++++|.+.+...+..+++|+.|++++|+++.++ .++.+++|++|++++|.++
T Consensus       294 ~n~l~~~~~~~~~~~l~~L~ls~n~l~~l~~l~~l~~L~~L~L~~n~l~~l~-~l~~l~~L~~L~l~~N~l~  364 (384)
T d2omza2         294 ENQLEDISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFFANNKVSDVS-SLANLTNINWLSAGHNQIS  364 (384)
T ss_dssp             SSCCSCCGGGGGCTTCSEEECCSSCCSCCGGGGGCTTCCEEECCSSCCCCCG-GGGGCTTCCEEECCSSCCC
T ss_pred             ccccccccccchhcccCeEECCCCCCCCCcccccCCCCCEEECCCCCCCCCh-hHcCCCCCCEEECCCCcCC
Confidence                  0124556678888888887776655667779999999999998876 5888999999999999875

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.60  E-value=1.1e-14  Score=92.76  Aligned_cols=129  Identities=19%  Similarity=0.273  Sum_probs=100.8

Q ss_pred             CCCcccEEEcCCCcccccCcccccCCCcccEEEccCCccccccchhhhccCCCCEEEccCCcCcCCCChHhhhcCccceE
Q 039528            3 ELKNLFELNLKGNNVEGHLPNCLKYLSHLKVFDISQNQLSGSLSSTITSLTSLEYLDLSYNNFEGPCPLSLLAHHSKLEV   82 (136)
Q Consensus         3 ~l~~L~~l~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~~l~~   82 (136)
                      .++.|+.+++.+|.+.. ++..  .+++++.|++++|......+..+..++.++.|++++|.+.+ ++...+..+++|++
T Consensus       148 ~l~~L~~l~l~~n~l~~-l~~~--~~~~L~~L~l~~n~~~~~~~~~~~~~~~l~~L~~s~n~l~~-~~~~~~~~l~~L~~  223 (305)
T d1xkua_         148 GMKKLSYIRIADTNITT-IPQG--LPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISA-VDNGSLANTPHLRE  223 (305)
T ss_dssp             GCTTCCEEECCSSCCCS-CCSS--CCTTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCE-ECTTTGGGSTTCCE
T ss_pred             cccccCccccccCCccc-cCcc--cCCccCEEECCCCcCCCCChhHhhccccccccccccccccc-ccccccccccccee
Confidence            46778888998888873 4443  25788899999888877777888888899999999998874 33355778899999


Q ss_pred             EEeccceeeecc-CCCCCccccEEEcCCCCCCCCCh-------hhhcCCCCcEEEcCCCcC
Q 039528           83 LVLSSTILVKTE-NFLPTFQLKELGLANCSLNVVPT-------FLLHQYDLKYLDLSHNNL  135 (136)
Q Consensus        83 l~l~~~~~~~~~-~~~~~~~L~~l~l~~n~~~~~~~-------~~~~~~~L~~l~l~~n~l  135 (136)
                      +++++|.+...+ .+..+++|+.|++++|+++.++.       .......|+.+++++|++
T Consensus       224 L~L~~N~L~~lp~~l~~l~~L~~L~Ls~N~i~~i~~~~f~~~~~~~~~~~L~~L~L~~N~~  284 (305)
T d1xkua_         224 LHLNNNKLVKVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPV  284 (305)
T ss_dssp             EECCSSCCSSCCTTTTTCSSCCEEECCSSCCCCCCTTSSSCSSCCTTSCCCSEEECCSSSS
T ss_pred             eecccccccccccccccccCCCEEECCCCccCccChhhccCcchhcccCCCCEEECCCCcC
Confidence            999998887664 46677899999999999877654       234567789999999876

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=99.55  E-value=1.3e-16  Score=96.17  Aligned_cols=103  Identities=24%  Similarity=0.318  Sum_probs=49.8

Q ss_pred             CCcccEEEcCCCcccccCcccccCCCcccEEEccCCccccccchhhhccCCCCEEEccCCcCcCCCChHhhhcCccceEE
Q 039528            4 LKNLFELNLKGNNVEGHLPNCLKYLSHLKVFDISQNQLSGSLSSTITSLTSLEYLDLSYNNFEGPCPLSLLAHHSKLEVL   83 (136)
Q Consensus         4 l~~L~~l~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~~l~~l   83 (136)
                      +++|++|++++|.++. ++ .+..+++|++|++++|.++ .++.....+++|++|++++|.++ .++  .+..+++|+.+
T Consensus        47 L~~L~~L~Ls~n~I~~-i~-~l~~l~~L~~L~Ls~N~i~-~i~~~~~~~~~L~~L~l~~N~i~-~l~--~~~~l~~L~~L  120 (198)
T d1m9la_          47 LKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIK-KIENLDAVADTLEELWISYNQIA-SLS--GIEKLVNLRVL  120 (198)
T ss_dssp             TTTCCEEECSEEEESC-CC-CHHHHTTCCEEECCEEEEC-SCSSHHHHHHHCCEEECSEEECC-CHH--HHHHHHHSSEE
T ss_pred             ccccceeECcccCCCC-cc-cccCCccccChhhcccccc-ccccccccccccccccccccccc-ccc--ccccccccccc
Confidence            4445555555555552 22 3455555555555555554 22333333344555555555554 221  24445555555


Q ss_pred             Eeccceeeecc---CCCCCccccEEEcCCCCC
Q 039528           84 VLSSTILVKTE---NFLPTFQLKELGLANCSL  112 (136)
Q Consensus        84 ~l~~~~~~~~~---~~~~~~~L~~l~l~~n~~  112 (136)
                      ++++|.+.+.+   .+..+++|+.|++++|++
T Consensus       121 ~L~~N~i~~~~~~~~l~~l~~L~~L~L~~N~l  152 (198)
T d1m9la_         121 YMSNNKITNWGEIDKLAALDKLEDLLLAGNPL  152 (198)
T ss_dssp             EESEEECCCHHHHHHHTTTTTCSEEEECSSHH
T ss_pred             ccccchhccccccccccCCCccceeecCCCcc
Confidence            55555544332   234444555555555554

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.53  E-value=9.5e-14  Score=85.04  Aligned_cols=125  Identities=24%  Similarity=0.329  Sum_probs=95.5

Q ss_pred             CCCCcccEEEcCCCcccccCcccccCCCcccEEEccCCccccc--------------------cchhhhccCCCCEEEcc
Q 039528            2 CELKNLFELNLKGNNVEGHLPNCLKYLSHLKVFDISQNQLSGS--------------------LSSTITSLTSLEYLDLS   61 (136)
Q Consensus         2 ~~l~~L~~l~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~--------------------~~~~~~~~~~l~~l~l~   61 (136)
                      ..+++++.+++++|.++. + ..+.+++.|+++.++++...+.                    ....+..++++++++++
T Consensus        82 ~~l~~l~~l~~~~n~~~~-i-~~l~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~  159 (227)
T d1h6ua2          82 KNLTKITELELSGNPLKN-V-SAIAGLQSIKTLDLTSTQITDVTPLAGLSNLQVLYLDLNQITNISPLAGLTNLQYLSIG  159 (227)
T ss_dssp             TTCCSCCEEECCSCCCSC-C-GGGTTCTTCCEEECTTSCCCCCGGGTTCTTCCEEECCSSCCCCCGGGGGCTTCCEEECC
T ss_pred             cccccccccccccccccc-c-ccccccccccccccccccccccchhccccchhhhhchhhhhchhhhhcccccccccccc
Confidence            456777778888777763 2 3456777777777776654321                    11235667889999999


Q ss_pred             CCcCcCCCChHhhhcCccceEEEeccceeeeccCCCCCccccEEEcCCCCCCCCChhhhcCCCCcEEEcCC
Q 039528           62 YNNFEGPCPLSLLAHHSKLEVLVLSSTILVKTENFLPTFQLKELGLANCSLNVVPTFLLHQYDLKYLDLSH  132 (136)
Q Consensus        62 ~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~L~~l~l~~  132 (136)
                      +|.+.. .+  .++.+++|+.+++++|.+.+.+.+..+++|++|++++|++++++ .++.+++|+.|++++
T Consensus       160 ~n~~~~-~~--~l~~l~~L~~L~Ls~n~l~~l~~l~~l~~L~~L~Ls~N~lt~i~-~l~~l~~L~~L~lsn  226 (227)
T d1h6ua2         160 NAQVSD-LT--PLANLSKLTTLKADDNKISDISPLASLPNLIEVHLKNNQISDVS-PLANTSNLFIVTLTN  226 (227)
T ss_dssp             SSCCCC-CG--GGTTCTTCCEEECCSSCCCCCGGGGGCTTCCEEECTTSCCCBCG-GGTTCTTCCEEEEEE
T ss_pred             cccccc-ch--hhcccccceecccCCCccCCChhhcCCCCCCEEECcCCcCCCCc-ccccCCCCCEEEeeC
Confidence            998863 22  27789999999999999888777777889999999999999887 488999999999864

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.50  E-value=1.4e-13  Score=79.87  Aligned_cols=108  Identities=17%  Similarity=0.102  Sum_probs=84.0

Q ss_pred             CCCcccEEEcCCCcccccCcccccCCCcccEEEccCC-ccccccchhhhccCCCCEEEccCCcCcCCCChHhhhcCccce
Q 039528            3 ELKNLFELNLKGNNVEGHLPNCLKYLSHLKVFDISQN-QLSGSLSSTITSLTSLEYLDLSYNNFEGPCPLSLLAHHSKLE   81 (136)
Q Consensus         3 ~l~~L~~l~l~~~~l~~~~~~~~~~l~~L~~L~l~~~-~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~~l~   81 (136)
                      .+...+.++.+++.+. ..|..+..++++++|++.++ .++...++.|..+++|+.|++++|+++ .++..++..+++|+
T Consensus         6 ~c~~~~~l~c~~~~~~-~~p~~l~~l~~l~~L~l~~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~-~i~~~~f~~l~~L~   83 (156)
T d2ifga3           6 CPHGSSGLRCTRDGAL-DSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLR-FVAPDAFHFTPRLS   83 (156)
T ss_dssp             CCSSSSCEECCSSCCC-TTTTTSCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCC-EECTTGGGSCSCCC
T ss_pred             CcCCCCeEEecCCCCc-cCcccccCccccCeeecCCCccccccCchhhccccccCcceeeccccC-Cccccccccccccc
Confidence            3455667888888877 56777888899999999765 587666778888999999999999997 45556688889999


Q ss_pred             EEEeccceeeecc-CCCCCccccEEEcCCCCC
Q 039528           82 VLVLSSTILVKTE-NFLPTFQLKELGLANCSL  112 (136)
Q Consensus        82 ~l~l~~~~~~~~~-~~~~~~~L~~l~l~~n~~  112 (136)
                      ++++++|.+...+ .......++.|++++|.+
T Consensus        84 ~L~Ls~N~l~~l~~~~~~~~~l~~L~L~~Np~  115 (156)
T d2ifga3          84 RLNLSFNALESLSWKTVQGLSLQELVLSGNPL  115 (156)
T ss_dssp             EEECCSSCCSCCCSTTTCSCCCCEEECCSSCC
T ss_pred             ceeccCCCCcccChhhhccccccccccCCCcc
Confidence            9999998887664 233344788899998888

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.49  E-value=1.8e-13  Score=79.33  Aligned_cols=85  Identities=25%  Similarity=0.266  Sum_probs=38.8

Q ss_pred             CCcccEEEcCCC-cccccCcccccCCCcccEEEccCCccccccchhhhccCCCCEEEccCCcCcCCCChHhhhcCccceE
Q 039528            4 LKNLFELNLKGN-NVEGHLPNCLKYLSHLKVFDISQNQLSGSLSSTITSLTSLEYLDLSYNNFEGPCPLSLLAHHSKLEV   82 (136)
Q Consensus         4 l~~L~~l~l~~~-~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~~l~~   82 (136)
                      ++++++|++.++ .++...+..|.++++|+.|++++|+++.+.+..|..+++|++|++++|+++ .++...+.. .+++.
T Consensus        30 l~~l~~L~l~~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~Ls~N~l~-~l~~~~~~~-~~l~~  107 (156)
T d2ifga3          30 AENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALE-SLSWKTVQG-LSLQE  107 (156)
T ss_dssp             CSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSCCS-CCCSTTTCS-CCCCE
T ss_pred             ccccCeeecCCCccccccCchhhccccccCcceeeccccCCcccccccccccccceeccCCCCc-ccChhhhcc-ccccc
Confidence            344455555332 344333344455555555555555554444444555555555555555554 333332322 23455


Q ss_pred             EEecccee
Q 039528           83 LVLSSTIL   90 (136)
Q Consensus        83 l~l~~~~~   90 (136)
                      +++++|.+
T Consensus       108 L~L~~Np~  115 (156)
T d2ifga3         108 LVLSGNPL  115 (156)
T ss_dssp             EECCSSCC
T ss_pred             cccCCCcc
Confidence            55555443

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=99.49  E-value=3.9e-16  Score=94.11  Aligned_cols=124  Identities=23%  Similarity=0.207  Sum_probs=100.1

Q ss_pred             ccEEEcCCC--cccccCcccccCCCcccEEEccCCccccccchhhhccCCCCEEEccCCcCcCCCChHhhhcCccceEEE
Q 039528            7 LFELNLKGN--NVEGHLPNCLKYLSHLKVFDISQNQLSGSLSSTITSLTSLEYLDLSYNNFEGPCPLSLLAHHSKLEVLV   84 (136)
Q Consensus         7 L~~l~l~~~--~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~~l~~l~   84 (136)
                      .+.+++.+.  .+. .++..+..+++|++|++++|.++..  +.+..+++|++|++++|.++ .++. ....++.|+.++
T Consensus        25 ~~~~~l~~~~~~i~-~l~~sl~~L~~L~~L~Ls~n~I~~i--~~l~~l~~L~~L~Ls~N~i~-~i~~-~~~~~~~L~~L~   99 (198)
T d1m9la_          25 AEKVELHGMIPPIE-KMDATLSTLKACKHLALSTNNIEKI--SSLSGMENLRILSLGRNLIK-KIEN-LDAVADTLEELW   99 (198)
T ss_dssp             CSCEECCBCCTTCC-CCHHHHHHTTTCCEEECSEEEESCC--CCHHHHTTCCEEECCEEEEC-SCSS-HHHHHHHCCEEE
T ss_pred             cceeeeecccCchh-hhhhHHhcccccceeECcccCCCCc--ccccCCccccChhhcccccc-cccc-cccccccccccc
Confidence            445566543  233 4567788999999999999999843  35889999999999999997 5553 355567899999


Q ss_pred             eccceeeeccCCCCCccccEEEcCCCCCCCCCh--hhhcCCCCcEEEcCCCcC
Q 039528           85 LSSTILVKTENFLPTFQLKELGLANCSLNVVPT--FLLHQYDLKYLDLSHNNL  135 (136)
Q Consensus        85 l~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~--~~~~~~~L~~l~l~~n~l  135 (136)
                      +++|.+...+.+..+++|+.|++++|.++.++.  .+..+++|+.|++++|++
T Consensus       100 l~~N~i~~l~~~~~l~~L~~L~L~~N~i~~~~~~~~l~~l~~L~~L~L~~N~l  152 (198)
T d1m9la_         100 ISYNQIASLSGIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPL  152 (198)
T ss_dssp             CSEEECCCHHHHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSSHH
T ss_pred             cccccccccccccccccccccccccchhccccccccccCCCccceeecCCCcc
Confidence            999998877666667799999999999988764  688999999999999975

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.40  E-value=2.5e-12  Score=79.18  Aligned_cols=31  Identities=19%  Similarity=0.185  Sum_probs=23.4

Q ss_pred             EcCCCCCCCCCh-hhhcCCCCcEEEcCCCcCC
Q 039528          106 GLANCSLNVVPT-FLLHQYDLKYLDLSHNNLV  136 (136)
Q Consensus       106 ~l~~n~~~~~~~-~~~~~~~L~~l~l~~n~l~  136 (136)
                      .+.+|.++++|. .+.++++|++|++++|.++
T Consensus       183 ~l~~n~l~~l~~~~f~~l~~L~~L~Ls~N~l~  214 (242)
T d1xwdc1         183 LSDNNNLEELPNDVFHGASGPVILDISRTRIH  214 (242)
T ss_dssp             CTTCTTCCCCCTTTTTTSCCCSEEECTTSCCC
T ss_pred             cccccccccccHHHhcCCCCCCEEECCCCcCC
Confidence            345666777764 5778899999999998774

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.32  E-value=7.8e-12  Score=76.90  Aligned_cols=88  Identities=18%  Similarity=0.192  Sum_probs=60.2

Q ss_pred             cccEEEcCCCcccccCcccccCCCcccEEEccCCccccc-cchhhhccCCCCEEEccC-CcCcCCCChHhhhcCccceEE
Q 039528            6 NLFELNLKGNNVEGHLPNCLKYLSHLKVFDISQNQLSGS-LSSTITSLTSLEYLDLSY-NNFEGPCPLSLLAHHSKLEVL   83 (136)
Q Consensus         6 ~L~~l~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~-~~~~~~~~~~l~~l~l~~-~~~~~~~~~~~~~~~~~l~~l   83 (136)
                      ++++|++++|.++...+..|.++++|+++++++|.+... .+..|..++.++++.+.. +.+. ..+...+..+++|+++
T Consensus        30 ~l~~L~Ls~n~i~~l~~~~f~~l~~L~~L~ls~n~~~~~i~~~~f~~l~~l~~l~~~~~n~l~-~~~~~~~~~l~~L~~l  108 (242)
T d1xwdc1          30 NAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLL-YINPEAFQNLPNLQYL  108 (242)
T ss_dssp             CCSEEEEESCCCCEECTTTTTTCTTCCEEEEESCTTCCEECSSSEESCTTCCEEEEECCTTCC-EECTTSEECCTTCCEE
T ss_pred             CCCEEECcCCcCCccChhHhhccchhhhhhhccccccceeecccccccccccccccccccccc-cccccccccccccccc
Confidence            678888888888855556788888888888888876543 344566777777777654 3444 2333446677778888


Q ss_pred             Eeccceeeecc
Q 039528           84 VLSSTILVKTE   94 (136)
Q Consensus        84 ~l~~~~~~~~~   94 (136)
                      ++.++.+...+
T Consensus       109 ~l~~~~l~~~~  119 (242)
T d1xwdc1         109 LISNTGIKHLP  119 (242)
T ss_dssp             EEESCCCCSCC
T ss_pred             ccchhhhcccc
Confidence            88776654443

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.27  E-value=2.1e-12  Score=81.48  Aligned_cols=61  Identities=25%  Similarity=0.303  Sum_probs=32.6

Q ss_pred             CCCcccEEEcCCCcccccCcccccCCCcccEEEccCC-cccccc-chhhhccCCCCEEEccCC
Q 039528            3 ELKNLFELNLKGNNVEGHLPNCLKYLSHLKVFDISQN-QLSGSL-SSTITSLTSLEYLDLSYN   63 (136)
Q Consensus         3 ~l~~L~~l~l~~~~l~~~~~~~~~~l~~L~~L~l~~~-~~~~~~-~~~~~~~~~l~~l~l~~~   63 (136)
                      .+++|++|++.++.+++..+..+..+++|++|++++| .++... ......+++|++|+++++
T Consensus        69 ~c~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~Ls~c~~itd~~l~~l~~~~~~L~~L~ls~c  131 (284)
T d2astb2          69 QCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWC  131 (284)
T ss_dssp             TBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCC
T ss_pred             hCCCcccccccccCCCcHHHHHHhcCCCCcCccccccccccccccchhhHHHHhccccccccc
Confidence            3555666666666655555555555666666666654 333211 112234566666666653

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.22  E-value=1.1e-11  Score=78.19  Aligned_cols=57  Identities=23%  Similarity=0.276  Sum_probs=29.0

Q ss_pred             cccEEEcCCCccccc-CcccccCCCcccEEEccCCccccccchhhhccCCCCEEEccC
Q 039528            6 NLFELNLKGNNVEGH-LPNCLKYLSHLKVFDISQNQLSGSLSSTITSLTSLEYLDLSY   62 (136)
Q Consensus         6 ~L~~l~l~~~~l~~~-~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~l~~   62 (136)
                      +|++++++++.++.. +...+..+++|++|++.++.+++..+..+..+++|++|++++
T Consensus        47 ~L~~LdLs~~~i~~~~l~~l~~~c~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~Ls~  104 (284)
T d2astb2          47 RVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSG  104 (284)
T ss_dssp             CCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTT
T ss_pred             CCCEEECCCCccCHHHHHHHHHhCCCcccccccccCCCcHHHHHHhcCCCCcCccccc
Confidence            455555555555432 223344455555555555555444444455555555555555

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=99.11  E-value=6.6e-11  Score=76.25  Aligned_cols=133  Identities=16%  Similarity=0.133  Sum_probs=65.6

Q ss_pred             CCCcccEEEcCCCcccccC----cccccCCCcccEEEccCCccccccchh-------------hhccCCCCEEEccCCcC
Q 039528            3 ELKNLFELNLKGNNVEGHL----PNCLKYLSHLKVFDISQNQLSGSLSST-------------ITSLTSLEYLDLSYNNF   65 (136)
Q Consensus         3 ~l~~L~~l~l~~~~l~~~~----~~~~~~l~~L~~L~l~~~~~~~~~~~~-------------~~~~~~l~~l~l~~~~~   65 (136)
                      .+++|+.|++++|.++...    ...+..+++|++|++++|.+.......             ....+.++.+.+++|.+
T Consensus        91 ~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~~~~~~~~~~L~~l~l~~n~i  170 (344)
T d2ca6a1          91 KCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRL  170 (344)
T ss_dssp             TCTTCCEEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCC
T ss_pred             hCCCcccccccccccccccccchhhhhcccccchheecccccccccccccccccccccccccccccCcccceeecccccc
Confidence            3566777777777776542    223345677777777777653110000             11234455555555554


Q ss_pred             cCCCC---hHhhhcCccceEEEeccceeeecc-------CCCCCccccEEEcCCCCCCC-----CChhhhcCCCCcEEEc
Q 039528           66 EGPCP---LSLLAHHSKLEVLVLSSTILVKTE-------NFLPTFQLKELGLANCSLNV-----VPTFLLHQYDLKYLDL  130 (136)
Q Consensus        66 ~~~~~---~~~~~~~~~l~~l~l~~~~~~~~~-------~~~~~~~L~~l~l~~n~~~~-----~~~~~~~~~~L~~l~l  130 (136)
                      .....   ...+...+.++.+++++|.+.+.+       .....+.|+.|++++|.++.     +...+..+++|++|++
T Consensus       171 ~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~g~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g~~~L~~~l~~~~~L~~L~L  250 (344)
T d2ca6a1         171 ENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGL  250 (344)
T ss_dssp             TGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEEC
T ss_pred             cccccccccchhhhhhhhcccccccccccccccccchhhhhcchhhhcccccccccccccccccccccccccccchhhhh
Confidence            31110   012233455666666555543321       12333455666666655521     2234455555566666


Q ss_pred             CCCcC
Q 039528          131 SHNNL  135 (136)
Q Consensus       131 ~~n~l  135 (136)
                      ++|.+
T Consensus       251 s~n~i  255 (344)
T d2ca6a1         251 NDCLL  255 (344)
T ss_dssp             TTCCC
T ss_pred             hcCcc
Confidence            55554

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=99.09  E-value=6.3e-11  Score=76.35  Aligned_cols=133  Identities=22%  Similarity=0.246  Sum_probs=91.7

Q ss_pred             CCcccEEEcCCCcccccC----cccccCCCcccEEEccCCccccc-----cchhhhccCCCCEEEccCCcCcCCCC---h
Q 039528            4 LKNLFELNLKGNNVEGHL----PNCLKYLSHLKVFDISQNQLSGS-----LSSTITSLTSLEYLDLSYNNFEGPCP---L   71 (136)
Q Consensus         4 l~~L~~l~l~~~~l~~~~----~~~~~~l~~L~~L~l~~~~~~~~-----~~~~~~~~~~l~~l~l~~~~~~~~~~---~   71 (136)
                      .+.++.+++++|.+....    ...+..++.++.+++++|.+...     +...+...++|+.|++++|.+.....   .
T Consensus       157 ~~~L~~l~l~~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~g~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g~~~L~  236 (344)
T d2ca6a1         157 APPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALA  236 (344)
T ss_dssp             CCCCCEEECCSSCCTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHH
T ss_pred             Ccccceeecccccccccccccccchhhhhhhhcccccccccccccccccchhhhhcchhhhccccccccccccccccccc
Confidence            455677777777765432    23345678899999999887632     23345678889999999988752211   1


Q ss_pred             HhhhcCccceEEEeccceeeecc------CC--CCCccccEEEcCCCCCCC-----CChhhh-cCCCCcEEEcCCCcCC
Q 039528           72 SLLAHHSKLEVLVLSSTILVKTE------NF--LPTFQLKELGLANCSLNV-----VPTFLL-HQYDLKYLDLSHNNLV  136 (136)
Q Consensus        72 ~~~~~~~~l~~l~l~~~~~~~~~------~~--~~~~~L~~l~l~~n~~~~-----~~~~~~-~~~~L~~l~l~~n~l~  136 (136)
                      ..+..++.|+++++++|.+.+.+      .+  .....+++|++++|.++.     +...+. +.++|++|++++|.++
T Consensus       237 ~~l~~~~~L~~L~Ls~n~i~~~g~~~l~~~l~~~~~~~L~~L~ls~N~i~~~~~~~l~~~l~~~~~~L~~L~l~~N~~~  315 (344)
T d2ca6a1         237 IALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFS  315 (344)
T ss_dssp             HHGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSC
T ss_pred             ccccccccchhhhhhcCccCchhhHHHHHHhhhccCCCCCEEECCCCcCChHHHHHHHHHHHccCCCCCEEECCCCcCC
Confidence            23567788999999998876553      11  234579999999999843     333443 5788999999999863

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=99.07  E-value=2.3e-09  Score=68.58  Aligned_cols=96  Identities=28%  Similarity=0.262  Sum_probs=72.7

Q ss_pred             cccEEEcCCCcccccCcccccCCCcccEEEccCCccccccchhhhccCCCCEEEccCCcCcCCCChHhhhcCccceEEEe
Q 039528            6 NLFELNLKGNNVEGHLPNCLKYLSHLKVFDISQNQLSGSLSSTITSLTSLEYLDLSYNNFEGPCPLSLLAHHSKLEVLVL   85 (136)
Q Consensus         6 ~L~~l~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~~l~~l~l   85 (136)
                      ++++|+++++.++ .+|+.   .++|++|++++|+++ .+|..   ..+|+.|++.+|+++ .++.    -.+.|+++++
T Consensus        39 ~l~~LdLs~~~L~-~lp~~---~~~L~~L~Ls~N~l~-~lp~~---~~~L~~L~l~~n~l~-~l~~----lp~~L~~L~L  105 (353)
T d1jl5a_          39 QAHELELNNLGLS-SLPEL---PPHLESLVASCNSLT-ELPEL---PQSLKSLLVDNNNLK-ALSD----LPPLLEYLGV  105 (353)
T ss_dssp             TCSEEECTTSCCS-CCCSC---CTTCSEEECCSSCCS-SCCCC---CTTCCEEECCSSCCS-CCCS----CCTTCCEEEC
T ss_pred             CCCEEEeCCCCCC-CCCCC---CCCCCEEECCCCCCc-ccccc---hhhhhhhhhhhcccc-hhhh----hccccccccc
Confidence            5789999999988 56653   568899999999887 55654   457888999888886 3431    1246889999


Q ss_pred             ccceeeeccCCCCCccccEEEcCCCCCCC
Q 039528           86 SSTILVKTENFLPTFQLKELGLANCSLNV  114 (136)
Q Consensus        86 ~~~~~~~~~~~~~~~~L~~l~l~~n~~~~  114 (136)
                      ++|.+...+....+..|+++++.++.+..
T Consensus       106 ~~n~l~~lp~~~~l~~L~~L~l~~~~~~~  134 (353)
T d1jl5a_         106 SNNQLEKLPELQNSSFLKIIDVDNNSLKK  134 (353)
T ss_dssp             CSSCCSSCCCCTTCTTCCEEECCSSCCSC
T ss_pred             cccccccccchhhhccceeeccccccccc
Confidence            99888777766677788999988887743

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=98.98  E-value=2.6e-09  Score=68.29  Aligned_cols=95  Identities=26%  Similarity=0.323  Sum_probs=77.7

Q ss_pred             CcccEEEccCCccccccchhhhccCCCCEEEccCCcCcCCCChHhhhcCccceEEEeccceeeeccCCCCCccccEEEcC
Q 039528           29 SHLKVFDISQNQLSGSLSSTITSLTSLEYLDLSYNNFEGPCPLSLLAHHSKLEVLVLSSTILVKTENFLPTFQLKELGLA  108 (136)
Q Consensus        29 ~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~L~~l~l~  108 (136)
                      .+++.|+++++.++ .+|+.   .+.|++|++++|+++ .+|.    .+.+|+.|++.+|.+...+..  ...|++|+++
T Consensus        38 ~~l~~LdLs~~~L~-~lp~~---~~~L~~L~Ls~N~l~-~lp~----~~~~L~~L~l~~n~l~~l~~l--p~~L~~L~L~  106 (353)
T d1jl5a_          38 RQAHELELNNLGLS-SLPEL---PPHLESLVASCNSLT-ELPE----LPQSLKSLLVDNNNLKALSDL--PPLLEYLGVS  106 (353)
T ss_dssp             HTCSEEECTTSCCS-CCCSC---CTTCSEEECCSSCCS-SCCC----CCTTCCEEECCSSCCSCCCSC--CTTCCEEECC
T ss_pred             cCCCEEEeCCCCCC-CCCCC---CCCCCEEECCCCCCc-cccc----chhhhhhhhhhhcccchhhhh--cccccccccc
Confidence            36889999999997 56653   568999999999998 6663    256899999999988766544  2379999999


Q ss_pred             CCCCCCCChhhhcCCCCcEEEcCCCcC
Q 039528          109 NCSLNVVPTFLLHQYDLKYLDLSHNNL  135 (136)
Q Consensus       109 ~n~~~~~~~~~~~~~~L~~l~l~~n~l  135 (136)
                      +|.+..+|. ++.+++|+.++++++.+
T Consensus       107 ~n~l~~lp~-~~~l~~L~~L~l~~~~~  132 (353)
T d1jl5a_         107 NNQLEKLPE-LQNSSFLKIIDVDNNSL  132 (353)
T ss_dssp             SSCCSSCCC-CTTCTTCCEEECCSSCC
T ss_pred             ccccccccc-hhhhccceeeccccccc
Confidence            999998885 57899999999998765

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.92  E-value=1.7e-10  Score=76.12  Aligned_cols=109  Identities=19%  Similarity=0.243  Sum_probs=72.1

Q ss_pred             CcccEEEcCCCcccccC-cccccCCCcccEEEccCCccccc----cchhhhccCCCCEEEccCCcCcCCCChHhhh----
Q 039528            5 KNLFELNLKGNNVEGHL-PNCLKYLSHLKVFDISQNQLSGS----LSSTITSLTSLEYLDLSYNNFEGPCPLSLLA----   75 (136)
Q Consensus         5 ~~L~~l~l~~~~l~~~~-~~~~~~l~~L~~L~l~~~~~~~~----~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~----   75 (136)
                      ++|++||++++.+++.. ...+..+++++.+++++|.++..    +...+..+++|++|++++|.++.........    
T Consensus         2 ~~l~~ld~~~~~i~~~~~~~l~~~l~~l~~L~L~~~~i~~~~~~~l~~~L~~~~~L~~LdLs~N~i~~~~~~~l~~~l~~   81 (460)
T d1z7xw1           2 LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQT   81 (460)
T ss_dssp             EEEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCS
T ss_pred             CCCCEEEeeCCcCChHHHHHHHHhCCCCCEEEeCCCCCCHHHHHHHHHHHhcCCCCCEEECcCCcCChHHHHHHHHHHhc
Confidence            35788999999988642 34456678888999999987632    3345567888999999888875211111111    


Q ss_pred             cCccceEEEeccceeeecc------CCCCCccccEEEcCCCCCC
Q 039528           76 HHSKLEVLVLSSTILVKTE------NFLPTFQLKELGLANCSLN  113 (136)
Q Consensus        76 ~~~~l~~l~l~~~~~~~~~------~~~~~~~L~~l~l~~n~~~  113 (136)
                      ...+|+++++++|.+.+..      ++...++|+.|++++|.++
T Consensus        82 ~~~~L~~L~L~~n~it~~~~~~l~~~l~~~~~L~~L~L~~N~i~  125 (460)
T d1z7xw1          82 PSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLG  125 (460)
T ss_dssp             TTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCH
T ss_pred             CCCCCCEEECCCCCccccccccccchhhccccccccccccccch
Confidence            1246788888777665543      3345567778887777773

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.91  E-value=1.3e-09  Score=71.85  Aligned_cols=133  Identities=26%  Similarity=0.260  Sum_probs=75.8

Q ss_pred             CCcccEEEcCCCcccccC----cccccCCCcccEEEccCCccccccchhh-----hccCCCCEEEccCCcCcCCCCh---
Q 039528            4 LKNLFELNLKGNNVEGHL----PNCLKYLSHLKVFDISQNQLSGSLSSTI-----TSLTSLEYLDLSYNNFEGPCPL---   71 (136)
Q Consensus         4 l~~L~~l~l~~~~l~~~~----~~~~~~l~~L~~L~l~~~~~~~~~~~~~-----~~~~~l~~l~l~~~~~~~~~~~---   71 (136)
                      ...++.+++++|.+....    ...+...+.++.+++++|.+.......+     .....++.+++.++.+......   
T Consensus       254 ~~~l~~l~l~~n~i~~~~~~~~~~~l~~~~~l~~l~l~~n~i~~~~~~~l~~~l~~~~~~L~~l~l~~~~l~~~~~~~l~  333 (460)
T d1z7xw1         254 SSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFS  333 (460)
T ss_dssp             TCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHH
T ss_pred             cccccccccccccccccccccccccccccccccccccccccccccccchhhccccccccccccccccccchhhhhhhhcc
Confidence            445677777777665321    1233446667777777766643211111     1234677777777766532211   


Q ss_pred             HhhhcCccceEEEeccceeeecc------CC-CCCccccEEEcCCCCCCC-----CChhhhcCCCCcEEEcCCCcCC
Q 039528           72 SLLAHHSKLEVLVLSSTILVKTE------NF-LPTFQLKELGLANCSLNV-----VPTFLLHQYDLKYLDLSHNNLV  136 (136)
Q Consensus        72 ~~~~~~~~l~~l~l~~~~~~~~~------~~-~~~~~L~~l~l~~n~~~~-----~~~~~~~~~~L~~l~l~~n~l~  136 (136)
                      ......++|++|++++|.+.+.+      .. .....|+.|++++|.+++     +...+..+++|++|++++|.++
T Consensus       334 ~~~~~~~~L~~L~Ls~N~i~~~g~~~l~~~l~~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~N~i~  410 (460)
T d1z7xw1         334 SVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLG  410 (460)
T ss_dssp             HHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCCCCCEEECCSSSCC
T ss_pred             cccccccchhhhheeeecccCcccchhhhhhhcccCCCCEEECCCCCCChHHHHHHHHHHhcCCCCCEEECCCCcCC
Confidence            12334557777888777665432      11 233467778887777743     3345666777778888777663

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.60  E-value=1e-08  Score=59.25  Aligned_cols=66  Identities=26%  Similarity=0.228  Sum_probs=41.5

Q ss_pred             ccCCCcccEEEccCCccccc--cchhhhccCCCCEEEccCCcCcCCCChHhhhcCccceEEEeccceee
Q 039528           25 LKYLSHLKVFDISQNQLSGS--LSSTITSLTSLEYLDLSYNNFEGPCPLSLLAHHSKLEVLVLSSTILV   91 (136)
Q Consensus        25 ~~~l~~L~~L~l~~~~~~~~--~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~   91 (136)
                      +..+++|++|++++|+++..  .+..+..+++|+.|++++|.++ .++.-.......++.+++.+|.+.
T Consensus        61 ~~~~~~L~~L~Ls~N~i~~l~~~~~~~~~l~~L~~L~Ls~N~i~-~l~~l~~l~~~~L~~L~L~~Npl~  128 (162)
T d1koha1          61 EENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELK-SERELDKIKGLKLEELWLDGNSLS  128 (162)
T ss_dssp             HHHCTTCCCCCCCSSCCCCCSGGGTHHHHSTTCCCCCCTTSCCC-CGGGHHHHTTCCCSSCCCTTSTTS
T ss_pred             HHhCCCCCEeeCCCccccCCchhHHHHhhCCcccccccccCccc-cchhhhhhhccccceeecCCCCcC
Confidence            34577777777777777643  2344566777777777777776 333222233456777777777664

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.60  E-value=1.4e-09  Score=62.94  Aligned_cols=85  Identities=25%  Similarity=0.215  Sum_probs=63.5

Q ss_pred             cchhhhccCCCCEEEccCCcCcCCCC-hHhhhcCccceEEEeccceeeeccCC--CCCccccEEEcCCCCCCCC-C----
Q 039528           45 LSSTITSLTSLEYLDLSYNNFEGPCP-LSLLAHHSKLEVLVLSSTILVKTENF--LPTFQLKELGLANCSLNVV-P----  116 (136)
Q Consensus        45 ~~~~~~~~~~l~~l~l~~~~~~~~~~-~~~~~~~~~l~~l~l~~~~~~~~~~~--~~~~~L~~l~l~~n~~~~~-~----  116 (136)
                      .......++.|++|++++|+++...+ ...+..+++|+.+++++|.+.+.+..  .....++.+++.+|++... .    
T Consensus        57 l~~~~~~~~~L~~L~Ls~N~i~~l~~~~~~~~~l~~L~~L~Ls~N~i~~l~~l~~l~~~~L~~L~L~~Npl~~~~~~~~~  136 (162)
T d1koha1          57 LRIIEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEELWLDGNSLSDTFRDQST  136 (162)
T ss_dssp             HHHHHHHCTTCCCCCCCSSCCCCCSGGGTHHHHSTTCCCCCCTTSCCCCGGGHHHHTTCCCSSCCCTTSTTSSSSSSHHH
T ss_pred             hHHHHHhCCCCCEeeCCCccccCCchhHHHHhhCCcccccccccCccccchhhhhhhccccceeecCCCCcCcCcccchh
Confidence            34445678999999999999974222 23467899999999999999877642  2334789999999999432 2    


Q ss_pred             ---hhhhcCCCCcEEE
Q 039528          117 ---TFLLHQYDLKYLD  129 (136)
Q Consensus       117 ---~~~~~~~~L~~l~  129 (136)
                         ..+..+++|+.||
T Consensus       137 y~~~i~~~~P~L~~LD  152 (162)
T d1koha1         137 YISAIRERFPKLLRLD  152 (162)
T ss_dssp             HHHHHHTTSTTCCEET
T ss_pred             HHHHHHHHCCCCCEEC
Confidence               2466789999886

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=98.51  E-value=2.2e-07  Score=53.80  Aligned_cols=84  Identities=18%  Similarity=0.171  Sum_probs=43.5

Q ss_pred             hccCCCCEEEccCCcCcCC---CChHhhhcCccceEEEeccceeeecc------CCCCCccccEEEcCCCCCCC------
Q 039528           50 TSLTSLEYLDLSYNNFEGP---CPLSLLAHHSKLEVLVLSSTILVKTE------NFLPTFQLKELGLANCSLNV------  114 (136)
Q Consensus        50 ~~~~~l~~l~l~~~~~~~~---~~~~~~~~~~~l~~l~l~~~~~~~~~------~~~~~~~L~~l~l~~n~~~~------  114 (136)
                      ...+.++.|++++|.+...   .-...+...+.|+++++++|.+.+.+      +....++|++|++.+|.+..      
T Consensus        41 ~~n~~L~~L~Ls~n~l~~~~~~~la~~L~~n~~L~~L~L~~n~i~~~g~~~l~~aL~~n~sL~~L~l~~n~~~~~g~~~~  120 (167)
T d1pgva_          41 CNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLLRSTLVTQSIVEFKADNQRQSVLGNQVE  120 (167)
T ss_dssp             TTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHHHHTTTTCCCSEEECCCCSSCCCCHHHH
T ss_pred             hhCCccceeeccccccchhHHHHHhhhhhhcccccceeeehhhcchHHHHHHHHHHHhCCcCCEEECCCCcCCCccHHHH
Confidence            3344555555555554311   01122334455566666655554432      23445567777777765532      


Q ss_pred             --CChhhhcCCCCcEEEcCCC
Q 039528          115 --VPTFLLHQYDLKYLDLSHN  133 (136)
Q Consensus       115 --~~~~~~~~~~L~~l~l~~n  133 (136)
                        +..++...+.|+.++++.+
T Consensus       121 ~~l~~~L~~n~sL~~l~l~~~  141 (167)
T d1pgva_         121 MDMMMAIEENESLLRVGISFA  141 (167)
T ss_dssp             HHHHHHHHHCSSCCEEECCCC
T ss_pred             HHHHHHHHhCCCccEeeCcCC
Confidence              2334556677777777654

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=98.28  E-value=4.2e-07  Score=52.52  Aligned_cols=110  Identities=15%  Similarity=0.137  Sum_probs=76.7

Q ss_pred             CCCcccEEEcCCC-ccccc----CcccccCCCcccEEEccCCcccc----ccchhhhccCCCCEEEccCCcCcCCCChH-
Q 039528            3 ELKNLFELNLKGN-NVEGH----LPNCLKYLSHLKVFDISQNQLSG----SLSSTITSLTSLEYLDLSYNNFEGPCPLS-   72 (136)
Q Consensus         3 ~l~~L~~l~l~~~-~l~~~----~~~~~~~l~~L~~L~l~~~~~~~----~~~~~~~~~~~l~~l~l~~~~~~~~~~~~-   72 (136)
                      +.+.|++|+++++ .++..    +...+...+.|++|++++|.+..    .+...+...+.++.|++++|.+....... 
T Consensus        13 n~~~L~~L~L~~~~~i~~~~~~~l~~~L~~n~~L~~L~Ls~n~l~~~~~~~la~~L~~n~~L~~L~L~~n~i~~~g~~~l   92 (167)
T d1pgva_          13 DDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARL   92 (167)
T ss_dssp             TCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHH
T ss_pred             CCCCCcEEEeCCCCCCCHHHHHHHHHHHhhCCccceeeccccccchhHHHHHhhhhhhcccccceeeehhhcchHHHHHH
Confidence            4688999999974 56543    33456678899999999998863    23345566789999999999986332212 


Q ss_pred             --hhhcCccceEEEeccceeeecc---------CCCCCccccEEEcCCCCC
Q 039528           73 --LLAHHSKLEVLVLSSTILVKTE---------NFLPTFQLKELGLANCSL  112 (136)
Q Consensus        73 --~~~~~~~l~~l~l~~~~~~~~~---------~~~~~~~L~~l~l~~n~~  112 (136)
                        ++...+.|+++++.+|.....+         .....++|+.++++.+..
T Consensus        93 ~~aL~~n~sL~~L~l~~n~~~~~g~~~~~~l~~~L~~n~sL~~l~l~~~~~  143 (167)
T d1pgva_          93 LRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFASM  143 (167)
T ss_dssp             HHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCCH
T ss_pred             HHHHHhCCcCCEEECCCCcCCCccHHHHHHHHHHHHhCCCccEeeCcCCCc
Confidence              3455678999999987544322         223455788998876544

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=98.06  E-value=6.9e-07  Score=51.48  Aligned_cols=84  Identities=14%  Similarity=0.184  Sum_probs=40.7

Q ss_pred             ccCCCCEEEccCCcCcCCCC---hHhhhcCccceEEEeccceeeecc------CCCCCccccEEEc--CCCCCCC-----
Q 039528           51 SLTSLEYLDLSYNNFEGPCP---LSLLAHHSKLEVLVLSSTILVKTE------NFLPTFQLKELGL--ANCSLNV-----  114 (136)
Q Consensus        51 ~~~~l~~l~l~~~~~~~~~~---~~~~~~~~~l~~l~l~~~~~~~~~------~~~~~~~L~~l~l--~~n~~~~-----  114 (136)
                      ..+.|++|++++|.+.....   ...+...+.++.+++.++.+.+.+      .....++++.+++  +.|.+++     
T Consensus        44 ~n~~L~~L~Ls~n~l~~~~~~~L~~~l~~~~~l~~l~l~~~~~~~~g~~~l~~~l~~~~~L~~l~L~l~~n~i~~~~~~~  123 (166)
T d1io0a_          44 TNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILALVEALQSNTSLIELRIDNQSQPLGNNVEME  123 (166)
T ss_dssp             TCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHH
T ss_pred             cCCccCeeeccCCcccHHHHHHHHHHHhhcccchhhhhccccccchhHHHHHHHHHhCccccEEeeccCCCcCcHHHHHH
Confidence            44455555555555431110   112333445555555554443332      2233445665544  3445532     


Q ss_pred             CChhhhcCCCCcEEEcCCCc
Q 039528          115 VPTFLLHQYDLKYLDLSHNN  134 (136)
Q Consensus       115 ~~~~~~~~~~L~~l~l~~n~  134 (136)
                      +..++...+.|+.|+++.+.
T Consensus       124 La~~L~~n~~L~~L~l~~~~  143 (166)
T d1io0a_         124 IANMLEKNTTLLKFGYHFTQ  143 (166)
T ss_dssp             HHHHHHHCSSCCEEECCCSS
T ss_pred             HHHHHHhCCCcCEEeCcCCC
Confidence            33456667777777776543

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=97.81  E-value=7.9e-06  Score=46.87  Aligned_cols=110  Identities=21%  Similarity=0.192  Sum_probs=75.9

Q ss_pred             CCCcccEEEcCC-Cccccc----CcccccCCCcccEEEccCCccccc----cchhhhccCCCCEEEccCCcCcCCCCh--
Q 039528            3 ELKNLFELNLKG-NNVEGH----LPNCLKYLSHLKVFDISQNQLSGS----LSSTITSLTSLEYLDLSYNNFEGPCPL--   71 (136)
Q Consensus         3 ~l~~L~~l~l~~-~~l~~~----~~~~~~~l~~L~~L~l~~~~~~~~----~~~~~~~~~~l~~l~l~~~~~~~~~~~--   71 (136)
                      +.+.|+++++++ +.++..    +...+...++|++|++++|.++..    +...+....+++.+++.++.+......  
T Consensus        15 ~~~~L~~L~L~~~~~i~~~~~~~l~~al~~n~~L~~L~Ls~n~l~~~~~~~L~~~l~~~~~l~~l~l~~~~~~~~g~~~l   94 (166)
T d1io0a_          15 NDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILAL   94 (166)
T ss_dssp             TCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHHH
T ss_pred             cCCCCcEEEcCCCCCCCHHHHHHHHHHHhcCCccCeeeccCCcccHHHHHHHHHHHhhcccchhhhhccccccchhHHHH
Confidence            468899999997 567543    334556789999999999988643    334556778999999999888633222  


Q ss_pred             -HhhhcCccceEEEec--cceeeecc------CCCCCccccEEEcCCCCC
Q 039528           72 -SLLAHHSKLEVLVLS--STILVKTE------NFLPTFQLKELGLANCSL  112 (136)
Q Consensus        72 -~~~~~~~~l~~l~l~--~~~~~~~~------~~~~~~~L~~l~l~~n~~  112 (136)
                       ..+...+.++.+++.  +|.+.+..      .....++|+.|++..+..
T Consensus        95 ~~~l~~~~~L~~l~L~l~~n~i~~~~~~~La~~L~~n~~L~~L~l~~~~~  144 (166)
T d1io0a_          95 VEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQ  144 (166)
T ss_dssp             HHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSH
T ss_pred             HHHHHhCccccEEeeccCCCcCcHHHHHHHHHHHHhCCCcCEEeCcCCCC
Confidence             234456788877775  45565443      224556899999877654