Citrus Sinensis ID: 039532

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------27
Protein Sequence
MVDDYPPGFRFYPTEEELVSFYLHNKLAGHRQDLNLQMDRIIPVINIYDYNPWDLPQFSQLLCHRDPEQWFFFIPRQESEARGGRPNRLTSAGYWKATGSPGLVYSSNNRPVGEKRTMVFYRGRAPNGRKTEWKMNEYKAIDAEASTSSSSATPPPVRHEFSLCRVYKKSKSLRAFDRRPPPGPGATSIGEPREVPQRADDHRGENIHNIQMAAPERTSSPDSSSSGDDGSQPPQVGGSSNSAATTATASNNEAWWDWEWDQLDNWKF
Secondary Structure (PSIPRED)
ccccccccccccccHHHHHHHHHHHHHcccccccccccccccEEEEcccccccccccccccccccccccEEEcccccccccccccccccccccccccccccccEEcccccEEEEEEEcEEccccccccccccccEEEEccccccccccccccccccccccEEEEEEEEEccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHccccccc
Secondary Structure Prediction (SSPRO)
ccccccccccccccHHHHHHHHHHHHHcccccccccHHHHHHHHEccccccccccccccccccccccEEEEEEcccccccccccccccHcccccEEccccccccccccccEEEEEEEEEEEcccccccccccEEEEEEEcccccccccccccccccccccEEEEEEEEcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Coil and Loop (DISEMBL)
mvddyppgfrfypteEELVSFYLHNklaghrqdlnlqmdriipviniydynpwdlpqfsqllchrdpeqwfffiprqesearggrpnrltsagywkatgspglvyssnnrpvgekrtmvfyrgrapngrktewKMNEYKAIdaeastssssatpppvrhefslCRVYKkskslrafdrrpppgpgatsigeprevpqraddhrgenihniqmaapertsspdssssgddgsqppqvggssnsaattatasnneawwdwewdqldnwkf
Flexible Loop (DISEMBL)
MVDDYPPGFRFYPTEEELVSFYLHNKLAGHRQDLNLQMDRIIPVINIYDYNPWDLPQFSQLLCHRDPEQWFFFIprqesearggrpnrltsagywkatgspglvyssnnrpvgekrtmvfyrgrapngrktewKMNEYKAIDAeastssssatpppvrheFSLCRVYKKSkslrafdrrpppgpgatsigeprevPQRADDHRGENIHNIQMAAPERTSSPDSSSSGDDGSQPPQVGGSSNSAATTATASNNEAWWDWEWDQLDNWKF
Low Complexity Region (SEG)
MVDDYPPGFRFYPTEEELVSFYLHNKLAGHRQDLNLQMDRIIPVINIYDYNPWDLPQFSQLLCHRDPEQWFFFIPRQESEARGGRPNRLTSAGYWKATGSPGLVYSSNNRPVGEKRTMVFYRGRAPNGRKTEWKMNEYKAIDAEastssssatpppVRHEFSLCRVYKKSKSLRAFDRRPPPGPGATSIGEPREVPQRADDHRGENIHNIQMAAPERTsspdssssgddgsqppqVGGssnsaattatasnnEAWWDWEWDQLDNWKF
Disordered region (IsUnstruct)
*******GFRFYPTEEELVSFYLHNKLAGHRQDLNLQMDRIIPVINIYDYNPWDLPQFSQLLCHRDPEQWFFFIP****************AGYWKATGSPGLVY***********TMVFYR****************************************LCRVY*************************************************************************************EAWWDWEWDQLDNW**
Disordered Region (DISOPRED)
**DDYPPGFRFYPTEEELVSFYLHNKLAGHRQDLNLQMDRIIPVINIYDYNPWDLPQFSQLLCHRDPEQWFFFIPRQESEARGGRPNRLTSAGYWKATGSPGLVYSSNNRPVGEKRTMVFYRGRAPNGRKTEWKMNEYKAID*****************EFSLCRVYKK*************************************************************************************WWDWEWDQLDNWKF
Disordered Region (DISEMBL)
MVDDYPPGFRFYPTEEELVSFYLHNKLAGHRQDLNLQMDRIIPVINIYDYNPWDLPQFSQLLCHRDPEQWFFFIPRQESEARGGRPNRLTSAGYWKATGSPGLVYSSNNRPVGEKRTMVFYRGRAPNGRKTEWKMNEYKAID****************HEFSLCRVYKKSKSLRAFDRRPPPGPGATSIGEPREVPQRADDHRGENIHNIQMAA**********************************ASNNEAWWDWEWDQLDNWKF
Disordered Region (DISPRO)
****YPPGFRFYPTEEELVSFYLHNKLAGHRQDLNLQMDRIIPVINIYDYNPWDLPQFSQLLCHRDPEQWFFFIPRQESEARGGRPNRLTSAGYWKATGSPGLVYSSNNRPVGEKRTMVFYRGRAPNGRKTEWKMNEYKAIDA***********PPVRHEFSLCRVYKKSK***********************************************************************************WWDWEWDQLDNWKF
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MVDDYPPGFRFYPTEEELVSFYLHNKLAGHRQDLNLQMDRIIPVINIYDYNPWDLPQFSQLLCHRDPEQWFFFIPRQESEARGGRPNRLTSAGYWKATGSPGLVYSSNNRPVGEKRTMVFYRGRAPNGRKTEWKMNEYKAIDAEASTSSSSATPPPVRHEFSLCRVYKKSKSLRAFDRRPPPGPGATSIGEPREVPQRADDHRGENIHNIQMAAPERTSSPDSSSSGDDGSQPPQVGGSSNSAATTATASNNEAWWDWEWDQLDNWKF
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	268	2.2.26 [Sep-21-2011]
Q9FMR3	235	NAC domain-containing pro	yes	no	0.645	0.736	0.588	5e-58
Q9M290	228	Putative NAC domain-conta	no	no	0.835	0.982	0.405	2e-45
Q93VY3	297	NAC domain-containing pro	no	no	0.555	0.501	0.424	2e-31
A0SPJ6	396	NAC transcription factor	N/A	no	0.615	0.416	0.398	3e-31
A0SPJ9	402	NAC transcription factor	N/A	no	0.615	0.410	0.398	3e-31
Q8H4S4	425	NAC transcription factor	no	no	0.619	0.390	0.382	4e-31
A2YMR0	425	NAC transcription factor	N/A	no	0.619	0.390	0.376	8e-31
Q9LDY8	317	NAC domain-containing pro	no	no	0.563	0.476	0.431	1e-30
Q9ZVH0	418	Protein FEZ OS=Arabidopsi	no	no	0.623	0.399	0.395	1e-30
A0SPJ8	406	NAC transcription factor	N/A	no	0.604	0.399	0.395	2e-30

>sp|Q9FMR3|NAC90_ARATH NAC domain-containing protein 90 OS=Arabidopsis thaliana GN=NAC090 PE=2 SV=1

 Score =  224 bits (571), Expect = 5e-58,   Method: Compositional matrix adjust.
 Identities = 106/180 (58%), Positives = 130/180 (72%), Gaps = 7/180 (3%)

Query: 1   MVDDYPPGFRFYPTEEELVSFYLHNKLAGHRQDLNLQMDRIIPVINIYDYNPWDLPQFSQ 60
           M D+   GFRFYPTEEELVSFYL N+L G   D    M R+IPV+++++  P  LP  + 
Sbjct: 1   MADEVTIGFRFYPTEEELVSFYLRNQLEGRSDD---SMHRVIPVLDVFEVEPSHLPNVAG 57

Query: 61  LLCHRDPEQWFFFIPRQESEARGGRPNRLTSAGYWKATGSPGLVYSSNNRPVGEKRTMVF 120
           + C  D EQWFFF+PRQE EARGGRP+R T +GYWKATGSPG V+S +N+ +G K+TMVF
Sbjct: 58  VRCRGDAEQWFFFVPRQEREARGGRPSRTTGSGYWKATGSPGPVFSKDNKMIGAKKTMVF 117

Query: 121 YRGRAPNGRKTEWKMNEYKAIDAEASTSSSSATPPPVRHEFSLCRVYKKSKSLRAFDRRP 180
           Y G+AP GRKT+WKMNEY A+D   + S    T P +R EFSLCRVY  + S RAFDRRP
Sbjct: 118 YTGKAPTGRKTKWKMNEYHAVDETVNAS----TIPKLRREFSLCRVYITTGSSRAFDRRP 173

Arabidopsis thaliana (taxid: 3702)

>sp|Q9M290|NAC61_ARATH Putative NAC domain-containing protein 61 OS=Arabidopsis thaliana GN=NAC061 PE=2 SV=1

 Score =  182 bits (462), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 109/269 (40%), Positives = 149/269 (55%), Gaps = 45/269 (16%)

Query: 1   MVDDYPPGFRFYPTEEELVSFYLHNKLAGHRQDLNLQMDRIIPVINIYDYNPWDLPQFSQ 60
           M ++   GFRFYPTE EL+++YL  +L G     N  +  +IP+++++   P  LP  + 
Sbjct: 1   MGEELSVGFRFYPTEVELLTYYLRIQLGGG----NATIHSLIPILDVFSVEPTQLPNLAG 56

Query: 61  LLCHRDPEQWFFFIPRQESEARGGRPNRLTSAGYWKATGSPGLVYSSNNRPVGEKRTMVF 120
             C  D EQW FF+PRQE EARGGRP+R T +GYWKATGSPG V+S +NR +G K+TMVF
Sbjct: 57  ERCRGDAEQWIFFVPRQEREARGGRPSRTTGSGYWKATGSPGPVFSPDNRVIGVKKTMVF 116

Query: 121 YRGRAPNGRKTEWKMNEYKAIDAEASTSSSSATPPPVRHEFSLCRVYKKSKSLRAFDRRP 180
           Y G+AP GRKT+WKMNEYKA++    T+S S  P              KS S RAFDRRP
Sbjct: 117 YTGKAPTGRKTKWKMNEYKAVE----TASVSTIP--------------KSGSSRAFDRRP 158

Query: 181 PPGPGATSIGEPREVPQRADDHRGENIHNIQMAAPERTSSPDSSSSGDDGSQPPQVGGSS 240
                  +    R +P    +           +    ++SP++S SG +     QV    
Sbjct: 159 -----TEAYAIERNLPSNGVETS---------SRATISTSPETSHSGGN-----QVDLPV 199

Query: 241 NSAATTATASNNEAWWD---WEWDQLDNW 266
           N+   T + S+         WEW+Q+ NW
Sbjct: 200 NATTITQSISDMVDELSQPFWEWEQM-NW 227

Arabidopsis thaliana (taxid: 3702)

>sp|Q93VY3|NAC72_ARATH NAC domain-containing protein 72 OS=Arabidopsis thaliana GN=NAC072 PE=2 SV=1

 Score =  136 bits (342), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 70/165 (42%), Positives = 102/165 (61%), Gaps = 16/165 (9%)

Query: 6   PPGFRFYPTEEELVSFYLHNKLAGHRQDLNLQMDRIIPVINIYDYNPWDLPQFSQLLCHR 65
           PPGFRFYPT+EEL+  YL  K+AG+   L     ++I  I++Y ++PWDLP  +      
Sbjct: 15  PPGFRFYPTDEELLVQYLCRKVAGYHFSL-----QVIGDIDLYKFDPWDLPSKALF---- 65

Query: 66  DPEQWFFFIPRQESEARGGRPNRLTSAGYWKATGSPGLVYSSNNRPVGEKRTMVFYRGRA 125
             ++W+FF PR      G RPNR+  +GYWKATG+  ++ +++ R VG K+ +VFY G+A
Sbjct: 66  GEKEWYFFSPRDRKYPNGSRPNRVAGSGYWKATGTDKII-TADGRRVGIKKALVFYAGKA 124

Query: 126 PNGRKTEWKMNEYKAIDAEASTSSSSATPPPVRHEFSLCRVYKKS 170
           P G KT W M+EY+ I+   S  SS         ++ LCR+YKK+
Sbjct: 125 PKGTKTNWIMHEYRLIEHSRSHGSSKL------DDWVLCRIYKKT 163

Transcription factors that bind specifically to the 5'-CATGTG-3' motif.

Arabidopsis thaliana (taxid: 3702)

>sp|A0SPJ6|NAMB2_TRIDB NAC transcription factor NAM-B2 OS=Triticum durum GN=NAM-B2 PE=2 SV=1

 Score =  135 bits (340), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 75/188 (39%), Positives = 109/188 (57%), Gaps = 23/188 (12%)

Query: 4   DYPPGFRFYPTEEELVSFYLHNKLAGHRQDLNLQMDRIIPVINIYDYNPWDLPQFSQLLC 63
           + PPGFRF+PT+EELV  YL  K A  +  L +    II  +++Y ++PW+LP+ +    
Sbjct: 27  ELPPGFRFHPTDEELVVHYLKKKAA--KVPLPVT---IITEVDLYKFDPWELPEKATF-- 79

Query: 64  HRDPEQWFFFIPRQESEARGGRPNRLTSAGYWKATGS--PGLVYSSNNRPVGEKRTMVFY 121
               ++W+FF PR      G RPNR  ++GYWKATG+  P L        VG K+ +VFY
Sbjct: 80  --GEQEWYFFSPRDRKYPNGARPNRAATSGYWKATGTDKPILASGCGREKVGVKKALVFY 137

Query: 122 RGRAPNGRKTEWKMNEYKAIDAEASTSSSSATPPPVR----------HEFSLCRVYKKSK 171
           RG+ P G KT W M+EY+  D  AS+S++++ PPPV            ++ LCR+YKK  
Sbjct: 138 RGKPPKGLKTNWIMHEYRLTD--ASSSATTSRPPPVTGGSRSASLRLDDWVLCRIYKKIN 195

Query: 172 SLRAFDRR 179
              A D++
Sbjct: 196 KAAAGDQQ 203

Transcription factor of the NAC family associated with the grain protein content (GPC). Accelerates senescence and increases nutrient remobilization from leaves to developing grains. The tetraploid cultivated wheat (T.durum) contains one additional gene encoding for a functional protein (NAM-A1) and one extra pseudogene (NAM-B1) (PubMed:17124321). Plays a weaker role in terminal senescence than NAM-A1.

Triticum durum (taxid: 4567)

>sp|A0SPJ9|NAM2_HORVD NAC transcription factor NAM-2 OS=Hordeum vulgare var. distichum GN=NAM-2 PE=4 SV=1

 Score =  135 bits (340), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 75/188 (39%), Positives = 108/188 (57%), Gaps = 23/188 (12%)

Query: 4   DYPPGFRFYPTEEELVSFYLHNKLAGHRQDLNLQMDRIIPVINIYDYNPWDLPQFSQLLC 63
           + PPGFRF+PT+EELV  YL  K A  +  L +    II  +++Y ++PW+LP+ +    
Sbjct: 27  ELPPGFRFHPTDEELVVHYLKKKAA--KVPLPVT---IIAEVDLYKFDPWELPEKATF-- 79

Query: 64  HRDPEQWFFFIPRQESEARGGRPNRLTSAGYWKATGS--PGLVYSSNNRPVGEKRTMVFY 121
               ++W+FF PR      G RPNR  ++GYWKATG+  P L        VG K  +VFY
Sbjct: 80  --GEQEWYFFSPRDRKYPNGARPNRAATSGYWKATGTDKPILASGCGREKVGVKXALVFY 137

Query: 122 RGRAPNGRKTEWKMNEYKAIDAEASTSSSSATPPPVR----------HEFSLCRVYKKSK 171
           RG+ P G KT W M+EY+  D  AS+S++++ PPPV            ++ LCR+YKK  
Sbjct: 138 RGKPPKGLKTNWIMHEYRLTD--ASSSAATSRPPPVTGGSRAASLRLDDWVLCRIYKKIN 195

Query: 172 SLRAFDRR 179
              A D++
Sbjct: 196 KAAAADQQ 203

Transcription factor of the NAC family associated with the grain protein content (GPC). Accelerates senescence and increases nutrient remobilization from leaves to developing grains. Sequences of 11 European varieties of H.vulgare tested belongs to the same haplotype while the sequence found in H.spontaneum, an ancestor of the cultivated H.vulgare which has a higher GPC, belongs to an other haplotype.

Hordeum vulgare var. distichum (taxid: 112509)

>sp|Q8H4S4|NAC10_ORYSJ NAC transcription factor ONAC010 OS=Oryza sativa subsp. japonica GN=ONAC010 PE=2 SV=1

 Score =  135 bits (339), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 73/191 (38%), Positives = 105/191 (54%), Gaps = 25/191 (13%)

Query: 4   DYPPGFRFYPTEEELVSFYLHNKLAGHRQDLNLQMDRIIPVINIYDYNPWDLPQFSQLLC 63
           + PPGFRF+PT+EELV  YL  K A     +      II  +++Y ++PWDLP+ +    
Sbjct: 28  ELPPGFRFHPTDEELVVHYLKKKAASVPLPVT-----IIAEVDLYKFDPWDLPEKANF-- 80

Query: 64  HRDPEQWFFFIPRQESEARGGRPNRLTSAGYWKATGS--PGLVYSSNNRPVGEKRTMVFY 121
               ++W+FF PR      G RPNR  ++GYWKATG+  P +   S    VG K+ +VFY
Sbjct: 81  --GEQEWYFFSPRDRKYPNGARPNRAATSGYWKATGTDKPIMSSGSTREKVGVKKALVFY 138

Query: 122 RGRAPNGRKTEWKMNEYKAIDAEASTSSSSAT---PPPVR-----------HEFSLCRVY 167
           RG+ P G KT W M+EY+  D  +S ++ + T   PPP+             ++ LCR+Y
Sbjct: 139 RGKPPKGVKTNWIMHEYRLTDTSSSAAAVATTRRPPPPITGGSKGAVSLRLDDWVLCRIY 198

Query: 168 KKSKSLRAFDR 178
           KK+    A  R
Sbjct: 199 KKTNKAGAGQR 209

Transcription factor of the NAC family associated with male fertility. Involved in anther development, but not in senescence. Reduced expression of NAC5 via RNAi leads to male-sterility.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|A2YMR0|NAC10_ORYSI NAC transcription factor ONAC010 OS=Oryza sativa subsp. indica GN=ONAC010 PE=3 SV=1

 Score =  134 bits (336), Expect = 8e-31,   Method: Compositional matrix adjust.
 Identities = 72/191 (37%), Positives = 105/191 (54%), Gaps = 25/191 (13%)

Query: 4   DYPPGFRFYPTEEELVSFYLHNKLAGHRQDLNLQMDRIIPVINIYDYNPWDLPQFSQLLC 63
           + PPGFRF+PT+EELV  YL  K A     +      II  +++Y ++PW+LP+ +    
Sbjct: 28  ELPPGFRFHPTDEELVVHYLKKKAASVPLPVT-----IIAEVDLYKFDPWELPEKANF-- 80

Query: 64  HRDPEQWFFFIPRQESEARGGRPNRLTSAGYWKATGS--PGLVYSSNNRPVGEKRTMVFY 121
               ++W+FF PR      G RPNR  ++GYWKATG+  P +   S    VG K+ +VFY
Sbjct: 81  --GEQEWYFFSPRDRKYPNGARPNRAATSGYWKATGTDKPIMASGSTREKVGVKKALVFY 138

Query: 122 RGRAPNGRKTEWKMNEYKAIDAEASTSSSSAT---PPPVR-----------HEFSLCRVY 167
           RG+ P G KT W M+EY+  D  +S ++ + T   PPP+             ++ LCR+Y
Sbjct: 139 RGKPPKGVKTNWIMHEYRLTDTSSSAAAVATTRQPPPPITGGSRGAVSLRLDDWVLCRIY 198

Query: 168 KKSKSLRAFDR 178
           KK+    A  R
Sbjct: 199 KKTNKAGAGQR 209

Transcription factor of the NAC family associated with male fertility.

Oryza sativa subsp. indica (taxid: 39946)

>sp|Q9LDY8|NAC55_ARATH NAC domain-containing protein 55 OS=Arabidopsis thaliana GN=NAC055 PE=2 SV=1

 Score =  133 bits (335), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 72/167 (43%), Positives = 100/167 (59%), Gaps = 16/167 (9%)

Query: 6   PPGFRFYPTEEELVSFYLHNKLAGHRQDLNLQMDRIIPVINIYDYNPWDLPQFSQLLCHR 65
           PPGFRFYPT+EEL+  YL  K AGH  D +LQ+   I  I++Y ++PW LP  +      
Sbjct: 15  PPGFRFYPTDEELMVEYLCRKAAGH--DFSLQL---IAEIDLYKFDPWVLPSKALF---- 65

Query: 66  DPEQWFFFIPRQESEARGGRPNRLTSAGYWKATGSPGLVYSSNNRPVGEKRTMVFYRGRA 125
             ++W+FF PR      G RPNR+  +GYWKATG+  ++ S+  R VG K+ +VFY G+A
Sbjct: 66  GEKEWYFFSPRDRKYPNGSRPNRVAGSGYWKATGTDKVI-STEGRRVGIKKALVFYIGKA 124

Query: 126 PNGRKTEWKMNEYKAIDAEASTSSSSATPPPVRHEFSLCRVYKKSKS 172
           P G KT W M+EY+ I+      S+         ++ LCR+YKK  S
Sbjct: 125 PKGTKTNWIMHEYRLIEPSRRNGSTKLD------DWVLCRIYKKQTS 165

Transcription factors that bind specifically to the 5'-CATGTG-3' motif.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9ZVH0|FEZ_ARATH Protein FEZ OS=Arabidopsis thaliana GN=FEZ PE=2 SV=1

 Score =  133 bits (334), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 72/182 (39%), Positives = 109/182 (59%), Gaps = 15/182 (8%)

Query: 1   MVDDYPPGFRFYPTEEELVSFYLHNKLAGHRQDLNLQMDRIIPVINIYDYNPWDLPQFSQ 60
           M D   PGFRF+PT+EELVSFYL  K+  +   + L     I  ++IY Y+PWDLP+F+ 
Sbjct: 12  MEDVLLPGFRFHPTDEELVSFYLKRKVQHNPLSIEL-----IRQLDIYKYDPWDLPKFAM 66

Query: 61  LLCHRDPEQWFFFIPRQESEARGGRPNRLTSAGYWKATGSPGLVYSSN-NRPVGEKRTMV 119
                  ++W+F+ PR        RPNR+T AG+WKATG+   +YSS  N+ +G K+++V
Sbjct: 67  ----TGEKEWYFYCPRDRKYRNSSRPNRVTGAGFWKATGTDRPIYSSEGNKCIGLKKSLV 122

Query: 120 FYRGRAPNGRKTEWKMNEYKAIDAEASTSSSSA---TPPPVRHEFSLCRVYKKSK--SLR 174
           FY+GRA  G KT+W M+E++       +  S     +P      +++CR++KK+   +LR
Sbjct: 123 FYKGRAAKGVKTDWMMHEFRLPSLSEPSPPSKRFFDSPVSPNDSWAICRIFKKTNTTTLR 182

Query: 175 AF 176
           A 
Sbjct: 183 AL 184

Promotes periclinal root capforming cell divisions. Activates expression of its negative regulator SMB in a feedback loop for controlled switches in cell division plane.

Arabidopsis thaliana (taxid: 3702)

>sp|A0SPJ8|NAM1_HORVD NAC transcription factor NAM-1 OS=Hordeum vulgare var. distichum GN=NAM-1 PE=4 SV=1

 Score =  132 bits (333), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 74/187 (39%), Positives = 107/187 (57%), Gaps = 25/187 (13%)

Query: 4   DYPPGFRFYPTEEELVSFYLHNKLAGHRQDLNLQMDRIIPVINIYDYNPWDLPQFSQLLC 63
           + PPGFRF+PT+EELV  YL  K A  +  L +    II  +++Y ++PW+LP+ +    
Sbjct: 34  ELPPGFRFHPTDEELVVHYLKKKAA--KAPLPVT---IIAEVDLYKFDPWELPEKATFGE 88

Query: 64  HRDPEQWFFFIPRQESEARGGRPNRLTSAGYWKATGSPGLVYSS----NNRPVGEKRTMV 119
           H    +W+FF PR    A G RPNR  ++GYWKATG+   + +S        VG K+ +V
Sbjct: 89  H----EWYFFSPRDRKYANGARPNRAATSGYWKATGTDKPILASATGCGREKVGVKKALV 144

Query: 120 FYRGRAPNGRKTEWKMNEYKAIDAEASTSSSSATPPPVR-----------HEFSLCRVYK 168
           FYRG+ P G KT W M+EY+   A A ++++S  PPPV             ++ LCR+YK
Sbjct: 145 FYRGKPPRGLKTNWIMHEYRLTGASAGSTTTS-RPPPVTGGSRAPASLRLDDWVLCRIYK 203

Query: 169 KSKSLRA 175
           K+    A
Sbjct: 204 KTSKAAA 210

Transcription factor of the NAC family associated with the grain protein content (GPC). Accelerates senescence and increases nutrient remobilization from leaves to developing grains. Sequences of 11 European varieties of H.vulgare tested belongs to the same haplotype while the sequence found in H.spontaneum, an ancestor of the cultivated H.vulgare which has a higher GPC, belongs to an other haplotype.

Hordeum vulgare var. distichum (taxid: 112509)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	268
255579389	261	NAC domain-containing protein, putative	0.955	0.980	0.565	1e-78
224091959	268	NAC domain protein, IPR003441 [Populus t	0.921	0.921	0.607	1e-75
225440815	253	PREDICTED: NAC domain-containing protein	0.929	0.984	0.623	6e-75
147859798	239	hypothetical protein VITISV_027899 [Viti	0.861	0.966	0.650	3e-74
224140079	254	NAC domain protein, IPR003441 [Populus t	0.906	0.956	0.596	3e-73
356503823	257	PREDICTED: NAC domain-containing protein	0.921	0.961	0.558	6e-73
356570861	254	PREDICTED: NAC domain-containing protein	0.910	0.960	0.569	1e-72
449451275	265	PREDICTED: NAC domain-containing protein	0.921	0.932	0.542	1e-71
224140077	255	NAC domain protein, IPR003441 [Populus t	0.884	0.929	0.592	4e-71
449451277	289	PREDICTED: NAC domain-containing protein	0.932	0.865	0.525	6e-66

>gi|255579389|ref|XP_002530539.1| NAC domain-containing protein, putative [Ricinus communis] gi|223529943|gb|EEF31871.1| NAC domain-containing protein, putative [Ricinus communis]

 Score =  298 bits (764), Expect = 1e-78,   Method: Compositional matrix adjust.
 Identities = 151/267 (56%), Positives = 184/267 (68%), Gaps = 11/267 (4%)

Query: 2   VDDYPPGFRFYPTEEELVSFYLHNKLAGHRQDLNLQMDRIIPVINIYDYNPWDLPQFSQL 61
           ++D  PG RFYPTEEELVSFYLH+KL G+R DLN  +D +IPV++IY+++PW+LPQ+S +
Sbjct: 1   MEDLAPGVRFYPTEEELVSFYLHHKLEGNRNDLNQVLDLVIPVLDIYEFSPWELPQYSGI 60

Query: 62  LCHRDPEQWFFFIPRQESEARGGRPNRLTSAGYWKATGSPGLVYSSNNRPVGEKRTMVFY 121
               DPEQWF FIPRQESE RGGR  RLT+ GYWKATGSPG VYSS+NR +  KRTMVFY
Sbjct: 61  YNRTDPEQWFLFIPRQESEVRGGRSKRLTTVGYWKATGSPGYVYSSDNRCIAVKRTMVFY 120

Query: 122 RGRAPNGRKTEWKMNEYKAIDAEASTSSSSATPPPVRHEFSLCRVYKKSKSLRAFDRRPP 181
           +GRAP G KT+WKMNEYKAI  E S+S+++   P +R EFSLCRVYKKSK LR+FDRRP 
Sbjct: 121 KGRAPKGHKTDWKMNEYKAIQRETSSSTAANANPKLREEFSLCRVYKKSKCLRSFDRRPV 180

Query: 182 PGPGATSIGEPREVPQRADDHRGENIHNIQMAAPERTSSPDSSSSGDDGSQPPQVGGSSN 241
                  +G PR   Q+A  H     H        R+S  D+ SS  D   P + G  SN
Sbjct: 181 ----GVEVG-PRIRAQQAHGHGATEAHQNPAVMETRSSHDDNISSSGDHGYPQKTGEESN 235

Query: 242 SAATTATASNNEAWWDWEWDQLDNWKF 268
               TA A  NE++ D  WDQL+NW F
Sbjct: 236 ----TALAIGNESFLD--WDQLENWYF 256

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224091959|ref|XP_002309417.1| NAC domain protein, IPR003441 [Populus trichocarpa] gi|222855393|gb|EEE92940.1| NAC domain protein, IPR003441 [Populus trichocarpa]

 Score =  289 bits (739), Expect = 1e-75,   Method: Compositional matrix adjust.
 Identities = 155/255 (60%), Positives = 178/255 (69%), Gaps = 8/255 (3%)

Query: 6   PPGFRFYPTEEELVSFYLHNKLAGHRQDLNLQMDRIIPVINIYDYNPWDLPQFSQLLCHR 65
           PPGFRFYPTEEELVSFYLHNKL   R+DL   MDR+IPV++IY++NPW+LPQFS  LCH 
Sbjct: 3   PPGFRFYPTEEELVSFYLHNKLEARREDLLRVMDRLIPVLDIYEFNPWELPQFSGDLCHG 62

Query: 66  DPEQWFFFIPRQESEARGGRPNRLTSAGYWKATGSPGLVYSSN-NRPVGEKRTMVFYRGR 124
           DPE+WFFFI RQESEARGGRP RLTS+GYWKATGSP  VYSSN NR +GEKRTMVFY GR
Sbjct: 63  DPEEWFFFIRRQESEARGGRPKRLTSSGYWKATGSPSPVYSSNSNRSIGEKRTMVFYEGR 122

Query: 125 APNGRKTEWKMNEYKAIDAEASTSSSSATPPPVRHEFSLCRVYKKSKSLRAFDRRPPPGP 184
           AP GRKTEWKMNE+KA++ EA  S S+   P +R EFSLCRVYKKSK +RAFDRRP    
Sbjct: 123 APRGRKTEWKMNEFKAMEEEAEASYSNGGHPRLRQEFSLCRVYKKSKFVRAFDRRP---S 179

Query: 185 GATSIGEPREVPQRADDHRGENIHNIQMAAPERTSSPDSSSSGDDGSQPPQVGGSSNSAA 244
           G     E R      ++    + H     A     S    S GD G Q  Q G SS +A+
Sbjct: 180 GVEMGTEMRAQATPGNEVTSSSSHQNPSTAETVPCSHAILSLGDHG-QTFQTGESSYTAS 238

Query: 245 TTATASNNEAWWDWE 259
                ++NE  WDWE
Sbjct: 239 ID---TDNEPIWDWE 250

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225440815|ref|XP_002276192.1| PREDICTED: NAC domain-containing protein 90 [Vitis vinifera]

 Score =  286 bits (732), Expect = 6e-75,   Method: Compositional matrix adjust.
 Identities = 167/268 (62%), Positives = 193/268 (72%), Gaps = 19/268 (7%)

Query: 2   VDDYPPGFRFYPTEEELVSFYLHNKLAGHRQDLNLQMDRIIPVINIYDYNPWDLPQFSQL 61
           ++D PPGFRF+PTEEELVSFYLH KL G R DL+  M R+IPV++IYD+NPWDLPQ S  
Sbjct: 1   MEDMPPGFRFFPTEEELVSFYLHYKLEGRRHDLDRMMGRVIPVVDIYDHNPWDLPQISGD 60

Query: 62  LCHRDPEQWFFFIPRQESEARGGRPNRLTSAGYWKATGSPGLVYSS--NNRPVGEKRTMV 119
           LCH D E WFFFIPRQE EARGGRPNRLT++GYWKATGSPG VYSS  N+R +G KRTMV
Sbjct: 61  LCHGDHE-WFFFIPRQEREARGGRPNRLTTSGYWKATGSPGHVYSSGQNSRIIGGKRTMV 119

Query: 120 FYRGRAPNGRKTEWKMNEYKAIDAEASTSSSSATPPPVRHEFSLCRVYKKSKSLRAFDRR 179
           +Y GRAP+GRKTEWKMNEYKAID EA+TS+++   PP+R EFSLCRVY K+K LRAFDRR
Sbjct: 120 YYEGRAPHGRKTEWKMNEYKAIDGEAATSNTAN--PPLRQEFSLCRVYMKTKCLRAFDRR 177

Query: 180 PPPGPGATSIGEPREVPQRADDHRGENIH-NIQMAAPERTSSPDSSSSGDDGSQPPQVGG 238
           P    G     E      R D+    + H N QM   ERTSSP+SSSS  D + P Q G 
Sbjct: 178 PSGALGR----EAASGRARGDEAAATSRHQNPQMV--ERTSSPESSSSSGDHANPSQTGE 231

Query: 239 SSNSAATTATASNNEAWWDWEWDQLDNW 266
           SSN      +A N      WEW+QL NW
Sbjct: 232 SSN---WEMSADNPPL---WEWEQL-NW 252

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147859798|emb|CAN79275.1| hypothetical protein VITISV_027899 [Vitis vinifera]

 Score =  284 bits (727), Expect = 3e-74,   Method: Compositional matrix adjust.
 Identities = 158/243 (65%), Positives = 182/243 (74%), Gaps = 12/243 (4%)

Query: 2   VDDYPPGFRFYPTEEELVSFYLHNKLAGHRQDLNLQMDRIIPVINIYDYNPWDLPQFSQL 61
           ++D PPGFRF+PTEEELVSFYLH KL G R DL+  M R+IPV++IYD+NPWDLPQ S  
Sbjct: 1   MEDMPPGFRFFPTEEELVSFYLHYKLEGRRHDLDRMMGRVIPVVDIYDHNPWDLPQISGD 60

Query: 62  LCHRDPEQWFFFIPRQESEARGGRPNRLTSAGYWKATGSPGLVYSS--NNRPVGEKRTMV 119
           LCH D E WFFFIPRQE EARGGRPNRLT++GYWKATGSPG VYSS  N+R +G KRTMV
Sbjct: 61  LCHGDHE-WFFFIPRQEREARGGRPNRLTTSGYWKATGSPGHVYSSGQNSRIIGGKRTMV 119

Query: 120 FYRGRAPNGRKTEWKMNEYKAIDAEASTSSSSATPPPVRHEFSLCRVYKKSKSLRAFDRR 179
           +Y GRAP+GRKTEWKMNEYKAID EA+TS+++   PP+R EFSLCRVY K+K LRAFDRR
Sbjct: 120 YYEGRAPHGRKTEWKMNEYKAIDGEAATSNTAN--PPLRQEFSLCRVYMKTKCLRAFDRR 177

Query: 180 PPPGPGATSIGEPREVPQRADDHRGENIH-NIQMAAPERTSSPDSSSSGDDGSQPPQVGG 238
           P    G     E      R D+    + H N QM   ERTSSP+SSSS  D + P Q G 
Sbjct: 178 PSGALGR----EAASGRARGDEAAATSRHQNPQMV--ERTSSPESSSSSGDHANPSQTGE 231

Query: 239 SSN 241
           SSN
Sbjct: 232 SSN 234

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224140079|ref|XP_002323414.1| NAC domain protein, IPR003441 [Populus trichocarpa] gi|222868044|gb|EEF05175.1| NAC domain protein, IPR003441 [Populus trichocarpa]

 Score =  280 bits (717), Expect = 3e-73,   Method: Compositional matrix adjust.
 Identities = 154/258 (59%), Positives = 184/258 (71%), Gaps = 15/258 (5%)

Query: 5   YPPGFRFYPTEEELVSFYLHNKLAGHRQDLNLQMDRIIPVINIYDYNPWDLPQFSQLLCH 64
           +PPG+RF+PTEEEL+SFYLH+KL G  +DLN  +++IIPV +IY+++PWDLPQFS  L H
Sbjct: 3   FPPGYRFFPTEEELISFYLHHKLDGGSEDLNQVINQIIPVRDIYEHDPWDLPQFSGGLHH 62

Query: 65  -RDPEQWFFFIPRQESEARGGRPNRLTSAGYWKATGSPGLVYSSNNRPVGEKRTMVFYRG 123
            +DPEQWFFFIPRQESEARGGRP RLT+ GYWKATGSPG V+ SNNR +G KRTMVFY G
Sbjct: 63  IKDPEQWFFFIPRQESEARGGRPKRLTNTGYWKATGSPGSVF-SNNRSIGLKRTMVFYSG 121

Query: 124 RAPNGRKTEWKMNEYKAIDAEASTSSSSATPPPVRHEFSLCRVYKKSKSLRAFDRRPPPG 183
           RAPNGRKTEWKMNEYKAID   ++SS+SA  P +RHE+SLCRVYK SKS+RAFDRRP   
Sbjct: 122 RAPNGRKTEWKMNEYKAIDQGKASSSTSAN-PKLRHEYSLCRVYKNSKSMRAFDRRPV-- 178

Query: 184 PGATSIGEPREVPQRADDHRGENIHNIQMAAPERTSSPDSSSSGDDGSQPPQVGGSSNSA 243
                + EPR  P    +    +  N      E TSSPDSS S D G+  P   G S+S 
Sbjct: 179 --GLEVIEPRTQPASGGNELVASDQN--HPTVENTSSPDSSWSADQGN--PSGTGESSSM 232

Query: 244 ATTATASNNEAWWDWEWD 261
                   + A WD + D
Sbjct: 233 PMPI----DNAMWDVDLD 246

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356503823|ref|XP_003520702.1| PREDICTED: NAC domain-containing protein 90-like [Glycine max]

 Score =  280 bits (715), Expect = 6e-73,   Method: Compositional matrix adjust.
 Identities = 144/258 (55%), Positives = 172/258 (66%), Gaps = 11/258 (4%)

Query: 2   VDDYPPGFRFYPTEEELVSFYLHNKLAGHRQDLNLQMDRIIPVINIYDYNPWDLPQFSQL 61
           + + PPG+RFYPTEEEL+ FYLHNKL G R+D+N    R+IPV++IYDYNP  LPQ S  
Sbjct: 1   MGNMPPGYRFYPTEEELILFYLHNKLEGEREDMN----RVIPVVDIYDYNPSQLPQISGE 56

Query: 62  LCHRDPEQWFFFIPRQESEARGGRPNRLTSAGYWKATGSPGLVYSSNNRPVGEKRTMVFY 121
               D EQWFFFIPRQESEARGGRP RLT+ GYWKATGSP  VYSS+N  +G KRTMVFY
Sbjct: 57  ASMGDTEQWFFFIPRQESEARGGRPKRLTTTGYWKATGSPNHVYSSDNHIIGIKRTMVFY 116

Query: 122 RGRAPNGRKTEWKMNEYKAIDAEASTSSSSATPPPVRHEFSLCRVYKKSKSLRAFDRRPP 181
            GRAPNG KT+WKMNEY AI  E S+S S+   P +R EFSLCRVYKKSK LRAFDRRPP
Sbjct: 117 SGRAPNGTKTDWKMNEYSAIKGEPSSSISNKAVPTLRKEFSLCRVYKKSKCLRAFDRRPP 176

Query: 182 PGPGATSIGEPREVPQRADDHRGENIHNIQMAAPERTSSPDSSSSGDDGSQPPQVGGSSN 241
           P     S    + V ++       + H+  M     T SP++S+S  D  QPP  G  + 
Sbjct: 177 PRRDVVSYSGAQNVEEQQKGSTLYDYHHKIMVKRSTTCSPETSTSSGDHDQPPLHGEET- 235

Query: 242 SAATTATASNNEAWWDWE 259
                 T  + + + DWE
Sbjct: 236 ------TQMDVDPFLDWE 247

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356570861|ref|XP_003553602.1| PREDICTED: NAC domain-containing protein 90-like [Glycine max]

 Score =  278 bits (712), Expect = 1e-72,   Method: Compositional matrix adjust.
 Identities = 147/258 (56%), Positives = 175/258 (67%), Gaps = 14/258 (5%)

Query: 2   VDDYPPGFRFYPTEEELVSFYLHNKLAGHRQDLNLQMDRIIPVINIYDYNPWDLPQFSQL 61
           +++ PPG+RFYPTEEEL+SFYLHNKL G R+D+N    R+IPV++IYDYNP +LPQ S  
Sbjct: 1   MENMPPGYRFYPTEEELISFYLHNKLEGEREDMN----RVIPVVDIYDYNPSELPQISGE 56

Query: 62  LCHRDPEQWFFFIPRQESEARGGRPNRLTSAGYWKATGSPGLVYSSNNRPVGEKRTMVFY 121
              RD EQWFFFIPRQESEARGGRP RLT+ GYWKATGSP  VYSS+NR +G KRTMVFY
Sbjct: 57  ASMRDTEQWFFFIPRQESEARGGRPKRLTTTGYWKATGSPNHVYSSDNRIIGIKRTMVFY 116

Query: 122 RGRAPNGRKTEWKMNEYKAIDAEASTSSSSATPPPVRHEFSLCRVYKKSKSLRAFDRRPP 181
            GRAPNG KT+WKMNEY AI     TSSSS   P +R EF+LCRVYKKSK L AFDRRPP
Sbjct: 117 SGRAPNGTKTDWKMNEYTAI----KTSSSS---PTLRKEFNLCRVYKKSKCLTAFDRRPP 169

Query: 182 PGPGATSIGEPREVPQRADDHRGENIHNIQMAAPERTSSPDSSSSGDDGSQPPQVGGSSN 241
           P     S    + V ++       + ++ +M     T SP  SSS  D  QPP  G    
Sbjct: 170 PRRDTESYSGAQNVEEQQKGSTSYDDYHHKMVERSATCSPAESSSSGDHDQPPLHG---E 226

Query: 242 SAATTATASNNEAWWDWE 259
            A      +N++ + DWE
Sbjct: 227 EATQMDVDNNDDPFLDWE 244

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449451275|ref|XP_004143387.1| PREDICTED: NAC domain-containing protein 90-like [Cucumis sativus] gi|449529236|ref|XP_004171607.1| PREDICTED: NAC domain-containing protein 90-like [Cucumis sativus]

 Score =  275 bits (704), Expect = 1e-71,   Method: Compositional matrix adjust.
 Identities = 146/269 (54%), Positives = 178/269 (66%), Gaps = 22/269 (8%)

Query: 2   VDDY--PPGFRFYPTEEELVSFYLHNKLAGHRQDLNLQMDRIIPVINIYDYNPWDLPQFS 59
           ++DY  PPGFRFYPTEEELVSFYL++KL G RQ  N  +D+IIP+++IY +NPWDLPQF+
Sbjct: 1   MEDYTLPPGFRFYPTEEELVSFYLYHKLEGGRQYFNGVVDQIIPILDIYHFNPWDLPQFA 60

Query: 60  QLLCHRDPEQWFFFIPRQESEARGGRPNRLTSAGYWKATGSPGLVYSSNN-RPVGEKRTM 118
             +C RD EQWFFFIPRQESEARGGRP R+TS+GYWKATGSP  VYSSNN R +G KR+M
Sbjct: 61  GEVCKRDEEQWFFFIPRQESEARGGRPKRVTSSGYWKATGSPTYVYSSNNHRSIGIKRSM 120

Query: 119 VFYRGRAPNGRKTEWKMNEYKAIDAEASTSSSSATPPPVRHEFSLCRVYKKSKSLRAFDR 178
           VFY GRAP G KT+WKMNEYK +  E    +S+  P     + SLCR+YKKSK++RAFDR
Sbjct: 121 VFYNGRAPKGTKTQWKMNEYKLVPGEQPFPASTTIP-----KLSLCRIYKKSKTVRAFDR 175

Query: 179 RPPPGPGATSIGEPREVPQRADDHR---------GENIHNIQMAAPERTSSPDSSSSGDD 229
           RPPP      I  P E+      H           + + N  +   ER  SP+SSSSGDD
Sbjct: 176 RPPPPQVEAPI--PTELRATTSQHNDVGDQFVDDDQKLSNPLLMTTERPCSPESSSSGDD 233

Query: 230 GSQPPQVGGSSNSAATTATASNNEAWWDW 258
             +      + N+        NNE  WDW
Sbjct: 234 HGES---STNDNNGQLKMEVDNNELVWDW 259

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224140077|ref|XP_002323413.1| NAC domain protein, IPR003441 [Populus trichocarpa] gi|222868043|gb|EEF05174.1| NAC domain protein, IPR003441 [Populus trichocarpa]

 Score =  274 bits (700), Expect = 4e-71,   Method: Compositional matrix adjust.
 Identities = 157/265 (59%), Positives = 183/265 (69%), Gaps = 28/265 (10%)

Query: 7   PGFRFYPTEEELVSFYLHNKLAGHRQDLNLQMDRIIPVINIYDYNPWDLPQFSQLLCHRD 66
           PGFRFYPTEEELVSFYL NKL   R+DL   MDR+IPV++IY +NPW+LP+    LCH D
Sbjct: 4   PGFRFYPTEEELVSFYLRNKLEARREDLLRVMDRLIPVLDIYGFNPWELPR---DLCHGD 60

Query: 67  PEQWFFFIPRQESEARGGRPNRLTSAGYWKATGSPGLVYSS-NNRPVGEKRTMVFYRGRA 125
           PE+ FFFIPRQ+SEA GGRP RLT+ GYWKATGSPG VYSS +NR +GEKRTMVFY GRA
Sbjct: 61  PEECFFFIPRQKSEAHGGRPKRLTATGYWKATGSPGSVYSSKSNRCIGEKRTMVFYNGRA 120

Query: 126 PNGRKTEWKMNEYKAIDAEASTSSSSATPPPVRHEFSLCRVYKKSKSLRAFDRRPPPGPG 185
           PNG+KT+WKMNEYKAI  E ++SSS A  P +R EFSLCRVYKKS  +RAFDRRP     
Sbjct: 121 PNGQKTDWKMNEYKAIKEEEASSSSGAY-PKLREEFSLCRVYKKSNFVRAFDRRP----- 174

Query: 186 ATSIGEPREVPQRA----DDHRGENIHNIQMAAPERTSSPDSSSSGDDGSQPPQVGGSSN 241
              +G    V  RA    DD  G    +   +A E T S DSS+SG  G QP Q G  S+
Sbjct: 175 ---LGVENMVQMRAQTAPDD--GATAFHQSPSAGEITCSHDSSTSGHHG-QPFQTGEISD 228

Query: 242 SAATTATASNNEAWWDWEWDQLDNW 266
            A       +NE    WEW+QLD +
Sbjct: 229 MAI------DNEPI--WEWEQLDQY 245

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449451277|ref|XP_004143388.1| PREDICTED: NAC domain-containing protein 90-like [Cucumis sativus]

 Score =  256 bits (655), Expect = 6e-66,   Method: Compositional matrix adjust.
 Identities = 152/289 (52%), Positives = 180/289 (62%), Gaps = 39/289 (13%)

Query: 7   PGFRFYPTEEELVSFYLHNKLAGH-RQDLNLQMDRIIPVINIYDYNPWDLPQFSQLLCHR 65
           PGFRFYPTEEEL+SFYL +KL      DL   MD+IIP+++IY++NPWDLPQ++  +C R
Sbjct: 7   PGFRFYPTEEELISFYLQHKLEDDGDDDLKQAMDQIIPILDIYNFNPWDLPQYAGEVCRR 66

Query: 66  DPEQWFFFIPRQESEARGGRPNRLTSAGYWKATGSPGLVYSSNNRPVGEKRTMVFYRGRA 125
           D EQWF+FIPRQESEARGGRP RLTS GYWKATGSP  VY SNN+ +G KRTMVFY GRA
Sbjct: 67  DEEQWFYFIPRQESEARGGRPKRLTSTGYWKATGSPSHVYCSNNKSIGVKRTMVFYNGRA 126

Query: 126 PNGRKTEWKMNEYKAI--------------DAEASTSSSSATPPPV--RHEFSLCRVYKK 169
           PNG KTEWKMNEYKAI               A     SSS T P +  R +FSLCR+YKK
Sbjct: 127 PNGTKTEWKMNEYKAIAHHRFINDNQPEHHSASNPNPSSSCTTPTIRMRQKFSLCRIYKK 186

Query: 170 SKSLRAFDRRPPPGPGATSIGEPREVPQRADDHRGENI---------HNIQMAAPERT-- 218
           SK+LR+FDRRPPP        EPR V Q A   +   I         +     AP  T  
Sbjct: 187 SKTLRSFDRRPPP-------CEPRMV-QFAVSTQAATIEPPNFPNEPNLTSTTAPLITTI 238

Query: 219 SSPDSSSSGDDGSQPPQ-VGGSSNSAATTATASNNEAWWD--WEWDQLD 264
           SSPDSSS  D   +  Q   G +N           EA ++  W+W+QL+
Sbjct: 239 SSPDSSSLRDRVDKSSQTTTGETNINNEVNIVVPMEAAYEPMWDWEQLN 287

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	268
TAIR|locus:2176372	235	NAC090 "NAC domain containing	0.645	0.736	0.572	8.8e-55
TAIR|locus:2100212	241	NAC061 "NAC domain containing	0.638	0.709	0.522	2.3e-50
TAIR|locus:2056266	414	LOV1 "LONG VEGETATIVE PHASE 1"	0.544	0.352	0.429	2.8e-34
TAIR|locus:2827676	276	NAC036 "NAC domain containing	0.570	0.554	0.422	3.6e-34
TAIR|locus:2009729	631	NAC028 "NAC domain containing	0.563	0.239	0.478	1.1e-33
TAIR|locus:2141075	262	NAC071 "NAC domain containing	0.578	0.591	0.437	4.1e-33
TAIR|locus:2167155	476	NAC086 "NAC domain containing	0.563	0.317	0.451	5.2e-33
TAIR|locus:2089764	246	NAC057 "NAC domain containing	0.563	0.613	0.442	1.8e-32
TAIR|locus:2033745	283	NAC011 "NAC domain containing	0.761	0.720	0.364	2.3e-32
TAIR|locus:2090176	317	NAC3 "NAC domain containing pr	0.705	0.596	0.386	1.3e-31

TAIR|locus:2176372 NAC090 "NAC domain containing protein 90" [Arabidopsis thaliana (taxid:3702)]

 Score = 546 (197.3 bits), Expect = 8.8e-55, Sum P(2) = 8.8e-55
 Identities = 103/180 (57%), Positives = 126/180 (70%)

Query:     1 MVDDYPPGFRFYPTEEELVSFYLHNKLAGHRQDLNLQMDRIIPVINIYDYNPWDLPQFSQ 60
             M D+   GFRFYPTEEELVSFYL N+L G   D    M R+IPV+++++  P  LP  + 
Sbjct:     1 MADEVTIGFRFYPTEEELVSFYLRNQLEGRSDD---SMHRVIPVLDVFEVEPSHLPNVAG 57

Query:    61 LLCHRDPEQWFFFIPRQESEARGGRPNRLTSAGYWKATGSPGLVYSSNNRPVGEKRTMVF 120
             + C  D EQWFFF+PRQE EARGGRP+R T +GYWKATGSPG V+S +N+ +G K+TMVF
Sbjct:    58 VRCRGDAEQWFFFVPRQEREARGGRPSRTTGSGYWKATGSPGPVFSKDNKMIGAKKTMVF 117

Query:   121 YRGRAPNGRKTEWKMNEYKAIDAEXXXXXXXXXXXXVRHEFSLCRVYKKSKSLRAFDRRP 180
             Y G+AP GRKT+WKMNEY A+D              +R EFSLCRVY  + S RAFDRRP
Sbjct:   118 YTGKAPTGRKTKWKMNEYHAVDE----TVNASTIPKLRREFSLCRVYITTGSSRAFDRRP 173

GO:0003677 "DNA binding" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0007275 "multicellular organismal development" evidence=ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

TAIR|locus:2100212 NAC061 "NAC domain containing protein 61" [Arabidopsis thaliana (taxid:3702)]

 Score = 497 (180.0 bits), Expect = 2.3e-50, Sum P(2) = 2.3e-50
 Identities = 94/180 (52%), Positives = 122/180 (67%)

Query:     1 MVDDYPPGFRFYPTEEELVSFYLHNKLAGHRQDLNLQMDRIIPVINIYDYNPWDLPQFSQ 60
             M ++   GFRFYPTE EL+++YL  +L G     N  +  +IP+++++   P  LP  + 
Sbjct:     1 MGEELSVGFRFYPTEVELLTYYLRIQLGGG----NATIHSLIPILDVFSVEPTQLPNLAG 56

Query:    61 LLCHRDPEQWFFFIPRQESEARGGRPNRLTSAGYWKATGSPGLVYSSNNRPVGEKRTMVF 120
               C  D EQW FF+PRQE EARGGRP+R T +GYWKATGSPG V+S +NR +G K+TMVF
Sbjct:    57 ERCRGDAEQWIFFVPRQEREARGGRPSRTTGSGYWKATGSPGPVFSPDNRVIGVKKTMVF 116

Query:   121 YRGRAPNGRKTEWKMNEYKAIDAEXXXXXXXXXXXXVRHEFSLCRVYKKSKSLRAFDRRP 180
             Y G+AP GRKT+WKMNEYKA++              +R EFS+CR+Y KS S RAFDRRP
Sbjct:   117 YTGKAPTGRKTKWKMNEYKAVET-----ASVSTIPKLRPEFSICRIYIKSGSSRAFDRRP 171

GO:0003677 "DNA binding" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;TAS

GO:0007275 "multicellular organismal development" evidence=ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0010200 "response to chitin" evidence=IEP

TAIR|locus:2056266 LOV1 "LONG VEGETATIVE PHASE 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 372 (136.0 bits), Expect = 2.8e-34, P = 2.8e-34
 Identities = 70/163 (42%), Positives = 103/163 (63%)

Query:     7 PGFRFYPTEEELVSFYLHNKLAGHRQDLNLQMDRIIPVINIYDYNPWDLPQFSQLLCHRD 66
             PGFRF+PTEEEL+ FYL  K+ G R   N+++   I  +++Y Y+PW+LP  + +     
Sbjct:    53 PGFRFHPTEEELIEFYLRRKVEGKR--FNVEL---ITFLDLYRYDPWELPAMAAI----G 103

Query:    67 PEQWFFFIPRQESEARGGRPNRLTSAGYWKATGSPGLVYSSNNRPVGEKRTMVFYRGRAP 126
              ++W+F++PR      G RPNR+T++GYWKATG+  ++ S  +RP+G K+T+VFY G+AP
Sbjct:   104 EKEWYFYVPRDRKYRNGDRPNRVTTSGYWKATGADRMIRSETSRPIGLKKTLVFYSGKAP 163

Query:   127 NGRKTEWKMNEYKAIDAEXXXXXXXXXXXXVRHEFSLCRVYKK 169
              G +T W MNEY+    E             + E SLCRVYK+
Sbjct:   164 KGTRTSWIMNEYRLPHHETEKYQ--------KAEISLCRVYKR 198

GO:0003677 "DNA binding" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0007275 "multicellular organismal development" evidence=ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

TAIR|locus:2827676 NAC036 "NAC domain containing protein 36" [Arabidopsis thaliana (taxid:3702)]

 Score = 371 (135.7 bits), Expect = 3.6e-34, P = 3.6e-34
 Identities = 74/175 (42%), Positives = 106/175 (60%)

Query:     7 PGFRFYPTEEELVSFYLHNKLAGHRQDLNLQMDRIIPVINIYDYNPWDLPQFSQLLCHRD 66
             PGFRF+PTEEEL+ FYL N + G R  +      +I  +NIY ++PWDLP  S++     
Sbjct:     8 PGFRFHPTEEELLDFYLKNMVYGKRSSVE-----VIGFLNIYRHDPWDLPGLSRI----G 58

Query:    67 PEQWFFFIPRQESEARGGRPNRLTSAGYWKATGSPGLVYSSNN--RPVGEKRTMVFYRGR 124
               +W+FF+PR+     GGRP+R T  GYWKATGS   + S +   R +G K+T+VFYRGR
Sbjct:    59 EREWYFFVPRERKHGNGGRPSRTTEKGYWKATGSDRKIISLSEPKRVIGLKKTLVFYRGR 118

Query:   125 APNGRKTEWKMNEYKAIDAEXXXXXXXXXXXXVRHEFSLCRVYKKSKSLRAFDRR 179
             AP G KT+W MNE++  D              +  +  LC++Y+K+ SL+  ++R
Sbjct:   119 APGGSKTDWVMNEFRMPD-----------NCSLPKDVVLCKIYRKATSLKVLEQR 162

GO:0003677 "DNA binding" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0007275 "multicellular organismal development" evidence=ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0010200 "response to chitin" evidence=IEP

GO:0009965 "leaf morphogenesis" evidence=IMP

GO:0045792 "negative regulation of cell size" evidence=IMP

GO:0048281 "inflorescence morphogenesis" evidence=IMP

GO:0000165 "MAPK cascade" evidence=RCA

GO:0009814 "defense response, incompatible interaction" evidence=RCA

TAIR|locus:2009729 NAC028 "NAC domain containing protein 28" [Arabidopsis thaliana (taxid:3702)]

 Score = 372 (136.0 bits), Expect = 1.1e-33, P = 1.1e-33
 Identities = 79/165 (47%), Positives = 104/165 (63%)

Query:     6 PPGFRFYPTEEELVSFYLHNKLAGHRQDLNLQMDRIIPVINIYDYNPWDLPQFSQLLCHR 65
             PPGFRF+PT+EELV +YL  K+ G   +L      IIP I++Y   PWDLP  S LL  +
Sbjct:     7 PPGFRFHPTDEELVIYYLKRKINGRTIELE-----IIPEIDLYKCEPWDLPGKS-LLPSK 60

Query:    66 DPEQWFFFIPRQESEARGGRPNRLTSAGYWKATGSPGLVYSSNNRPVGEKRTMVFYRGRA 125
             D E WFFF PR      G R NR T AGYWKATG    V +S++R VG K+T+V+YRGRA
Sbjct:    61 DLE-WFFFSPRDRKYPNGSRTNRATKAGYWKATGKDRKV-TSHSRMVGTKKTLVYYRGRA 118

Query:   126 PNGRKTEWKMNEYKAIDAEXXXXXXXXXXXXVRHEFSLCRVYKKS 170
             P+G +T+W M+EY+  + E            ++  ++LCRV+KKS
Sbjct:   119 PHGSRTDWVMHEYRLEEQECDSKSG------IQDAYALCRVFKKS 157

GO:0003677 "DNA binding" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0007275 "multicellular organismal development" evidence=ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

TAIR|locus:2141075 NAC071 "NAC domain containing protein 71" [Arabidopsis thaliana (taxid:3702)]

 Score = 361 (132.1 bits), Expect = 4.1e-33, P = 4.1e-33
 Identities = 73/167 (43%), Positives = 105/167 (62%)

Query:     6 PPGFRFYPTEEELVSFYLHNKLAGHRQDLNLQMDRIIPVINIYDYNPWDLPQFSQLLCHR 65
             PPGFRF+PT+EEL+ +YL  K+ G    L ++++ +IPVI++Y ++PW+LP  S  L +R
Sbjct:     7 PPGFRFHPTDEELIGYYLSRKIEG----LEIELE-VIPVIDLYKFDPWELPGKS-FLPNR 60

Query:    66 DPEQWFFFIPRQESEARGGRPNRLTSAGYWKATGSPGLVYSSNNRPV-GEKRTMVFYRGR 124
             D E WFFF PR +  A G R NR T AGYWKATG    +   ++  + G ++T+VFY GR
Sbjct:    61 DLE-WFFFCPRDKKYANGSRTNRATKAGYWKATGKDRKITCKSSHVIAGYRKTLVFYEGR 119

Query:   125 APNGRKTEWKMNEYKAIDAEXXXXXXXXXXXXVRHEFSLCRVYKKSK 171
             AP G +T W M+EY+  D +             +  F+LCRV KK++
Sbjct:   120 APLGDRTNWFMHEYRLCDIDDHSQKSPNF----KGAFALCRVVKKNE 162

GO:0003677 "DNA binding" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0007275 "multicellular organismal development" evidence=ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

TAIR|locus:2167155 NAC086 "NAC domain containing protein 86" [Arabidopsis thaliana (taxid:3702)]

 Score = 360 (131.8 bits), Expect = 5.2e-33, P = 5.2e-33
 Identities = 74/164 (45%), Positives = 104/164 (63%)

Query:     6 PPGFRFYPTEEELVSFYLHNKLAGHRQDLNLQMDRIIPVINIYDYNPWDLPQFSQLLCHR 65
             PPGFRF+PT+EEL+++YL  K+ G  Q++ L+   IIP +++Y   PWDLP  S L+  +
Sbjct:     7 PPGFRFHPTDEELITYYLKRKING--QEIELE---IIPEVDLYKCEPWDLPGKS-LIPSK 60

Query:    66 DPEQWFFFIPRQESEARGGRPNRLTSAGYWKATGSPGLVYSSNNRPVGEKRTMVFYRGRA 125
             D E WFFF PR      G R NR T  GYWKATG    V S  +R +G K+T+V+YRGRA
Sbjct:    61 DQE-WFFFSPRDRKYPNGSRTNRATKGGYWKATGKDRRV-SWRDRAIGTKKTLVYYRGRA 118

Query:   126 PNGRKTEWKMNEYKAIDAEXXXXXXXXXXXXVRHEFSLCRVYKK 169
             P+G +T W M+EY+  ++E            ++  ++LCRV+KK
Sbjct:   119 PHGIRTGWVMHEYRLDESECEPSAFG-----MQDAYALCRVFKK 157

GO:0003677 "DNA binding" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0007275 "multicellular organismal development" evidence=ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

TAIR|locus:2089764 NAC057 "NAC domain containing protein 57" [Arabidopsis thaliana (taxid:3702)]

 Score = 355 (130.0 bits), Expect = 1.8e-32, P = 1.8e-32
 Identities = 73/165 (44%), Positives = 104/165 (63%)

Query:     6 PPGFRFYPTEEELVSFYLHNKLAGHRQDLNLQMDRIIPVINIYDYNPWDLPQFSQLLCHR 65
             PPGFRF+PT+EELV++YL  K+ G  Q++ L    IIP +++Y   PWDL + S  L  R
Sbjct:     7 PPGFRFHPTDEELVNYYLKRKING--QEIELD---IIPEVDLYKCEPWDLAEKS-FLPSR 60

Query:    66 DPEQWFFFIPRQESEARGGRPNRLTSAGYWKATGSPGLVYSSNNRPVGEKRTMVFYRGRA 125
             DPE W+FF PR      G R NR T  GYWK+TG    V +S +R +G K+T+V+Y+GRA
Sbjct:    61 DPE-WYFFGPRDRKYPNGFRTNRATRGGYWKSTGKDRRV-TSQSRAIGMKKTLVYYKGRA 118

Query:   126 PNGRKTEWKMNEYKAIDAEXXXXXXXXXXXXVRHEFSLCRVYKKS 170
             P G +T+W M+EY+  D +            ++  ++LCRV+KK+
Sbjct:   119 PQGIRTDWVMHEYRLDDKDCDDPSS------LQDSYALCRVFKKN 157

GO:0003677 "DNA binding" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0007275 "multicellular organismal development" evidence=ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

TAIR|locus:2033745 NAC011 "NAC domain containing protein 11" [Arabidopsis thaliana (taxid:3702)]

 Score = 354 (129.7 bits), Expect = 2.3e-32, P = 2.3e-32
 Identities = 82/225 (36%), Positives = 128/225 (56%)

Query:     1 MVDDY-PPGFRFYPTEEELVSFYLHNKLAGHRQDLNLQMDRIIPVINIYDYNPWDLPQFS 59
             MV  + PPGFRFYPT+EELV +YLH +  G    L ++++ IIP++++Y ++PW+LP+ S
Sbjct:     1 MVGSFLPPGFRFYPTDEELVGYYLHRRNEG----LEIELE-IIPLMDLYKFDPWELPEKS 55

Query:    60 QLLCHRDPEQWFFFIPRQESEARGGRPNRLTSAGYWKATGSPGLVY------SSNNRPVG 113
               L +RD E WFFF  R      G R NR T +GYWKATG    +       SS++   G
Sbjct:    56 -FLPNRDME-WFFFCHRDRKYQNGSRINRATKSGYWKATGKDRKIVCHSSSSSSSSSITG 113

Query:   114 EKRTMVFYRGRAPNGRKTEWKMNEYKAIDAEXXXXXXXXXXXXVRHEFSLCRVYKKSK-S 172
              ++T+VFY GRAP G +TEW M+EY+  D +             + +F+LCRV K+++ +
Sbjct:   114 CRKTLVFYMGRAPFGGRTEWVMHEYRLFDNDTSQGSLNF-----KGDFALCRVIKRNEHT 168

Query:   173 LRAFDRRPPPGPGATSIGEPREVPQRADDHRGE-NIHNIQMAAPE 216
             L+  +   P     +         Q +D  +G  +  N ++++P+
Sbjct:   169 LKKCEIISPEVSDESLSNNVNNFCQASDLEKGSCDASNTRLSSPD 213

GO:0003677 "DNA binding" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;TAS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

TAIR|locus:2090176 NAC3 "NAC domain containing protein 3" [Arabidopsis thaliana (taxid:3702)]

 Score = 347 (127.2 bits), Expect = 1.3e-31, P = 1.3e-31
 Identities = 80/207 (38%), Positives = 114/207 (55%)

Query:     6 PPGFRFYPTEEELVSFYLHNKLAGHRQDLNLQMDRIIPVINIYDYNPWDLPQFSQLLCHR 65
             PPGFRFYPT+EEL+  YL  K AGH  D +LQ+   I  I++Y ++PW LP  S+ L   
Sbjct:    15 PPGFRFYPTDEELMVEYLCRKAAGH--DFSLQL---IAEIDLYKFDPWVLP--SKALFGE 67

Query:    66 DPEQWFFFIPRQESEARGGRPNRLTSAGYWKATGSPGLVYSSNNRPVGEKRTMVFYRGRA 125
               ++W+FF PR      G RPNR+  +GYWKATG+  ++ S+  R VG K+ +VFY G+A
Sbjct:    68 --KEWYFFSPRDRKYPNGSRPNRVAGSGYWKATGTDKVI-STEGRRVGIKKALVFYIGKA 124

Query:   126 PNGRKTEWKMNEYKAIDAEXXXXXXXXXXXXVRHEFSLCRVYKKSKSLR--AFDRRPPPG 183
             P G KT W M+EY+ I+                 ++ LCR+YKK  S +  A++     G
Sbjct:   125 PKGTKTNWIMHEYRLIEPSRRNGSTKLD------DWVLCRIYKKQTSAQKQAYNNLMTSG 178

Query:   184 PGATSIGEPREVPQRADDHRGENIHNI 210
                ++ G          D   E++H I
Sbjct:   179 REYSNNGSSTSSSSHQYDDVLESLHEI 205

GO:0003677 "DNA binding" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0007275 "multicellular organismal development" evidence=ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS;IDA

GO:0009867 "jasmonic acid mediated signaling pathway" evidence=RCA;TAS

GO:0009414 "response to water deprivation" evidence=RCA;IMP

GO:0005515 "protein binding" evidence=IPI

GO:0000165 "MAPK cascade" evidence=RCA

GO:0006612 "protein targeting to membrane" evidence=RCA

GO:0007154 "cell communication" evidence=RCA

GO:0007165 "signal transduction" evidence=RCA

GO:0009409 "response to cold" evidence=RCA

GO:0009611 "response to wounding" evidence=RCA

GO:0009695 "jasmonic acid biosynthetic process" evidence=RCA

GO:0009723 "response to ethylene stimulus" evidence=RCA

GO:0009733 "response to auxin stimulus" evidence=RCA

GO:0009737 "response to abscisic acid stimulus" evidence=RCA

GO:0009738 "abscisic acid mediated signaling pathway" evidence=RCA

GO:0009753 "response to jasmonic acid stimulus" evidence=RCA

GO:0009862 "systemic acquired resistance, salicylic acid mediated signaling pathway" evidence=RCA

GO:0009863 "salicylic acid mediated signaling pathway" evidence=RCA

GO:0010363 "regulation of plant-type hypersensitive response" evidence=RCA

GO:0030968 "endoplasmic reticulum unfolded protein response" evidence=RCA

GO:0031348 "negative regulation of defense response" evidence=RCA

GO:0042538 "hyperosmotic salinity response" evidence=RCA

GO:0043069 "negative regulation of programmed cell death" evidence=RCA

GO:0050832 "defense response to fungus" evidence=RCA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9FMR3	NAC90_ARATH	No assigned EC number	0.5888	0.6455	0.7361	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

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Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

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Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	268
pfam02365	130	pfam02365, NAM, No apical meristem (NAM) protein	9e-64

>gnl|CDD|216997 pfam02365, NAM, No apical meristem (NAM) protein

 Score =  195 bits (498), Expect = 9e-64
 Identities = 65/136 (47%), Positives = 82/136 (60%), Gaps = 7/136 (5%)

Query: 6   PPGFRFYPTEEELVSFYLHNKLAGHRQDLNLQMDRIIPVINIYDYNPWDLPQFSQLLCHR 65
           PPGFRF+PT+EELV +YL  K+ G      L +  +IP ++IY + PWDLP         
Sbjct: 2   PPGFRFHPTDEELVVYYLKRKVLGKP----LPLLDVIPEVDIYKFEPWDLPDG--KAKGG 55

Query: 66  DPEQWFFFIPRQESEARGGRPNRLTSAGYWKATGSPGLVYSSNNRPVGEKRTMVFYRGRA 125
           D E W+FF PR      G R NR T +GYWKATG    V S     VG K+T+VFY+GRA
Sbjct: 56  DRE-WYFFSPRDRKYPNGSRTNRATGSGYWKATGKDKPVLSKGGEVVGMKKTLVFYKGRA 114

Query: 126 PNGRKTEWKMNEYKAI 141
           P G KT+W M+EY+  
Sbjct: 115 PKGEKTDWVMHEYRLE 130

This is a family of no apical meristem (NAM) proteins these are plant development proteins. Mutations in NAM result in the failure to develop a shoot apical meristem in petunia embryos. NAM is indicated as having a role in determining positions of meristems and primordial. One member of this family NAP (NAC-like, activated by AP3/PI) is encoded by the target genes of the AP3/PI transcriptional activators and functions in the transition between growth by cell division and cell expansion in stamens and petals. Length = 130

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	268
PF02365	129	NAM: No apical meristem (NAM) protein; InterPro: I	100.0

>PF02365 NAM: No apical meristem (NAM) protein; InterPro: IPR003441 The NAC domain (for Petunia hybrida (Petunia) NAM and for Arabidopsis ATAF1, ATAF2, and CUC2) is an N-terminal module of ~160 amino acids, which is found in proteins of the NAC family of plant-specific transcriptional regulators (no apical meristem (NAM) proteins) []

Probab=100.00  E-value=2.2e-43  Score=288.68  Aligned_cols=129  Identities=44%  Similarity=0.953  Sum_probs=95.5

Q ss_pred             CCCCceeCCChHHHHHHHHHHHHcCCCCCcccccCcceeecCCCCCCCCCcccchhcccCCCCceEEEeecCcccccCCC
Q 039532            5 YPPGFRFYPTEEELVSFYLHNKLAGHRQDLNLQMDRIIPVINIYDYNPWDLPQFSQLLCHRDPEQWFFFIPRQESEARGG   84 (268)
Q Consensus         5 LPpGfRF~PTDeELV~~YL~~Ki~g~~~~l~~~~~~~I~~~DVy~~~Pw~Lp~~~~~~~~gd~~~wyFFt~r~~k~~~G~   84 (268)
                      |||||||+|||+|||.+||++|+.|++++    ...+|+++|||++|||+|+..   . .+.+++||||++++++..+|.
T Consensus         1 LP~G~rF~PtD~ELi~~yL~~k~~g~~~~----~~~~i~~~Diy~~~P~~L~~~---~-~~~~~~~yFF~~~~~~~~~~~   72 (129)
T PF02365_consen    1 LPPGFRFRPTDEELINHYLRPKILGEPLP----CEDVIHDVDIYSAHPWELPAK---F-KGGDEEWYFFSPRKKKYPNGG   72 (129)
T ss_dssp             --TTEEE---HHHHHHCTHHHHHTT-HHC----S-CHSEE--GGGS-GGGCHHH---S-SS-SSEEEEEEE---------
T ss_pred             CCCceEecCChHHHHHHHHHHHhcCCCCC----cccceeecccCccChHHhhhh---c-cCCCceEEEEEecccccCCcc
Confidence            89999999999999999999999999987    568899999999999999952   1 123447999999999988999


Q ss_pred             CCccccccceeeecCCCceeecCCCceEEEEEEEEEeecCCCCCCCcCcEEEEEEeC
Q 039532           85 RPNRLTSAGYWKATGSPGLVYSSNNRPVGEKRTMVFYRGRAPNGRKTEWKMNEYKAI  141 (268)
Q Consensus        85 R~~R~t~~G~Wk~~G~~k~V~~~~g~viG~Krtf~Fy~g~~p~g~kT~W~M~EY~l~  141 (268)
                      |++|++++|+||.+|+.+.|.+.+|.+||+|++|+||.++.+++.+|+|+||||+|.
T Consensus        73 r~~R~~~~G~Wk~~g~~~~i~~~~g~~iG~k~~l~f~~~~~~~~~kt~W~M~EY~L~  129 (129)
T PF02365_consen   73 RPNRVTGGGYWKSTGKEKPIKDPGGKVIGFKKTLVFYSGKSPNGKKTGWVMHEYSLE  129 (129)
T ss_dssp             -S-EEETTEEEEEECEEEEEEE-TTCEEEEEEEEEEEESSTTS-EEEEEEEEEEEE-
T ss_pred             cccccccceEEeecccccccccccceeeeeEEEEEEEeccCCCCCcCCeEEEEEEeC
Confidence            999999999999999999999877999999999999998888889999999999984

NAC proteins are involved in developmental processes, including formation of the shoot apical meristem, floral organs and lateral shoots, as well as in plant hormonal control and defence. The NAC domain is accompanied by diverse C-terminal transcriptional activation domains. The NAC domain has been shown to be a DNA-binding domain (DBD) and a dimerization domain [,]. The NAC domain can be subdivided into five subdomains (A-E). Each subdomain is distinguishable by blocks of heterogeneous amino acids or gaps. While the NAC domains were rich in basic amino acids (R, K and H) as a whole, the distribution of positive and negative amino acids in each subdomain were unequal. Subdomains C and D are rich in basic amino acids but poor in acidic amino acids, while subdomain B contains a high proportion of acidic amino acids. Putative nuclear localization signals (NLS) have been detected in subdomains C and D []. The DBD is contained within a 60 amino acid region located within subdomains D and E []. The overall structure of the NAC domain monomer consists of a very twisted antiparallel beta-sheet, which packs against an N-terminal alpha-helix on one side and one shorter helix on the other side surrounded by a few helical elements. The structure suggests that the NAC domain mediates dimerization through conserved interactions including a salt bridge, and DNA binding through the NAC dimer face rich in positive charges [].; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent; PDB: 1UT4_A 3SWM_B 4DUL_B 3SWP_D 1UT7_B 3ULX_A.

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Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	268
1ut4_A	171	Structure Of The Conserved Domain Of Anac, A Member		3e-29
3swm_A	174	The Nac Domain Of Anac019 In Complex With Dna, Gold		3e-29
3ulx_A	174	Crystal Structural Of The Conserved Domain Of Rice		4e-26

>pdb|1UT4|A Chain A, Structure Of The Conserved Domain Of Anac, A Member Of The Nac Family Of Transcription Factors Length = 171

Iteration: 1
 Score =  125 bits (314), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 69/167 (41%), Positives = 97/167 (58%), Gaps = 16/167 (9%)
Query: 6   PPGFRFYPTEEELVSFYLHNKLAGHRQDLNLQMDRIIPVINIYDYNPWDLPQFSQLLCHR 65
           PPGFRFYPT+EEL+  YL  K AG+  D +LQ+   I  I++Y ++PW LP  +      
Sbjct: 18  PPGFRFYPTDEELMVQYLCRKAAGY--DFSLQL---IAEIDLYKFDPWVLPNKALF---- 68
Query: 66  DPEQWFFFIPRQESEARGGRPNRLTSAGYWKATGSPGLVYSSNNRPVGEKRTMVFYRGRA 125
             ++W+FF PR      G RPNR+  +GYWKATG+  ++ +   R VG K+ +VFY G+A
Sbjct: 69  GEKEWYFFSPRDRKYPNGSRPNRVAGSGYWKATGTDKIISTEGQR-VGIKKALVFYIGKA 127
Query: 126 PNGRKTEWKMNEYKAIDAEXXXXXXXXXXXXVRHEFSLCRVYKKSKS 172
           P G KT W M+EY+ I+                 ++ LCR+YKK  S
Sbjct: 128 PKGTKTNWIMHEYRLIEPSRRNGSTKL------DDWVLCRIYKKQSS 168

>pdb|3SWM|A Chain A, The Nac Domain Of Anac019 In Complex With Dna, Gold Derivative Length = 174

Iteration: 1
 Score =  125 bits (313), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 69/167 (41%), Positives = 97/167 (58%), Gaps = 16/167 (9%)
Query: 6   PPGFRFYPTEEELVSFYLHNKLAGHRQDLNLQMDRIIPVINIYDYNPWDLPQFSQLLCHR 65
           PPGFRFYPT+EEL+  YL  K AG+  D +LQ+   I  I++Y ++PW LP  +      
Sbjct: 21  PPGFRFYPTDEELMVQYLCRKAAGY--DFSLQL---IAEIDLYKFDPWVLPNKALF---- 71
Query: 66  DPEQWFFFIPRQESEARGGRPNRLTSAGYWKATGSPGLVYSSNNRPVGEKRTMVFYRGRA 125
             ++W+FF PR      G RPNR+  +GYWKATG+  ++ +   R VG K+ +VFY G+A
Sbjct: 72  GEKEWYFFSPRDRKYPNGSRPNRVAGSGYWKATGTDKIISTEGQR-VGIKKALVFYIGKA 130
Query: 126 PNGRKTEWKMNEYKAIDAEXXXXXXXXXXXXVRHEFSLCRVYKKSKS 172
           P G KT W M+EY+ I+                 ++ LCR+YKK  S
Sbjct: 131 PKGTKTNWIMHEYRLIEPSRRNGSTKL------DDWVLCRIYKKQSS 171

>pdb|3ULX|A Chain A, Crystal Structural Of The Conserved Domain Of Rice Stress-Responsive Nac1 Length = 174

Iteration: 1
 Score =  115 bits (287), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 66/167 (39%), Positives = 93/167 (55%), Gaps = 11/167 (6%)
Query: 4   DYPPGFRFYPTEEELVSFYLHNKLAGHRQDLNLQMDRIIPVINIYDYNPWDLPQFSQLLC 63
           + PPGFRF+PT++ELV  YL  K AG R  +      II  +++Y ++PWDLP+ +    
Sbjct: 14  NLPPGFRFHPTDDELVEHYLCRKAAGQRLPVP-----IIAEVDLYKFDPWDLPERALF-- 66
Query: 64  HRDPEQWFFFIPRQESEARGGRPNRLTSAGYWKATGSPGLVYSSNNRPVGEKRTMVFYRG 123
                +W+FF PR      G RPNR    GYWKATG+   V +   R +G K+ +VFY G
Sbjct: 67  --GAREWYFFTPRDRKYPNGSRPNRAAGNGYWKATGADKPV-APRGRTLGIKKALVFYAG 123
Query: 124 RAPNGRKTEWKMNEYKAIDAEXXXXXXXXXXXXVRHEFSLCRVYKKS 170
           +AP G KT+W M+EY+  DA             +  ++ LCR+Y K 
Sbjct: 124 KAPRGVKTDWIMHEYRLADAGRAAAGAKKGSLRL-DDWVLCRLYNKK 169

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	268
3ulx_A	174	Stress-induced transcription factor NAC1; NAC fami	2e-73
1ut7_A	171	No apical meristem protein; transcription regulati	2e-72

>3ulx_A Stress-induced transcription factor NAC1; NAC family, stress-responsive, DNA binding protein; 2.60A {Oryza sativa subsp} Length = 174

 Score =  221 bits (565), Expect = 2e-73
 Identities = 66/169 (39%), Positives = 93/169 (55%), Gaps = 11/169 (6%)

Query: 6   PPGFRFYPTEEELVSFYLHNKLAGHRQDLNLQMDRIIPVINIYDYNPWDLPQFSQLLCHR 65
           PPGFRF+PT++ELV  YL  K AG R  +      II  +++Y ++PWDLP+ +      
Sbjct: 16  PPGFRFHPTDDELVEHYLCRKAAGQRLPVP-----IIAEVDLYKFDPWDLPERALF---- 66

Query: 66  DPEQWFFFIPRQESEARGGRPNRLTSAGYWKATGSPGLVYSSNNRPVGEKRTMVFYRGRA 125
              +W+FF PR      G RPNR    GYWKATG+   V     R +G K+ +VFY G+A
Sbjct: 67  GAREWYFFTPRDRKYPNGSRPNRAAGNGYWKATGADKPVAP-RGRTLGIKKALVFYAGKA 125

Query: 126 PNGRKTEWKMNEYKAIDAEASTSSSSATPPPVRHEFSLCRVYKKSKSLR 174
           P G KT+W M+EY+  DA  + + +         ++ LCR+Y K     
Sbjct: 126 PRGVKTDWIMHEYRLADAGRAAAGAKKGSLR-LDDWVLCRLYNKKNEWE 173

>1ut7_A No apical meristem protein; transcription regulation, transcription, transcription factor, DNA binding, abscisic acid response, NAC domain; 1.9A {Arabidopsis thaliana} SCOP: b.143.1.1 PDB: 1ut4_A 4dul_A 3swp_A 3swm_A Length = 171

 Score =  218 bits (557), Expect = 2e-72
 Identities = 68/169 (40%), Positives = 96/169 (56%), Gaps = 16/169 (9%)

Query: 6   PPGFRFYPTEEELVSFYLHNKLAGHRQDLNLQMDRIIPVINIYDYNPWDLPQFSQLLCHR 65
           PPGFRFYPT+EEL+  YL  K AG+   L      +I  I++Y ++PW LP  +      
Sbjct: 18  PPGFRFYPTDEELMVQYLCRKAAGYDFSLQ-----LIAEIDLYKFDPWVLPNKA---LFG 69

Query: 66  DPEQWFFFIPRQESEARGGRPNRLTSAGYWKATGSPGLVYSSNNRPVGEKRTMVFYRGRA 125
           + E W+FF PR      G RPNR+  +GYWKATG+  ++ +   + VG K+ +VFY G+A
Sbjct: 70  EKE-WYFFSPRDRKYPNGSRPNRVAGSGYWKATGTDKIIST-EGQRVGIKKALVFYIGKA 127

Query: 126 PNGRKTEWKMNEYKAIDAEASTSSSSATPPPVRHEFSLCRVYKKSKSLR 174
           P G KT W M+EY+ I+       S         ++ LCR+YKK  S +
Sbjct: 128 PKGTKTNWIMHEYRLIE------PSRRNGSTKLDDWVLCRIYKKQSSAQ 170

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	268
3ulx_A	174	Stress-induced transcription factor NAC1; NAC fami	100.0
1ut7_A	171	No apical meristem protein; transcription regulati	100.0

>3ulx_A Stress-induced transcription factor NAC1; NAC family, stress-responsive, DNA binding protein; 2.60A {Oryza sativa subsp} SCOP: b.143.1.1

Probab=100.00  E-value=4.9e-54  Score=367.66  Aligned_cols=158  Identities=42%  Similarity=0.865  Sum_probs=130.3

Q ss_pred             CCCCCceeCCChHHHHHHHHHHHHcCCCCCcccccCcceeecCCCCCCCCCcccchhcccCCCCceEEEeecCcccccCC
Q 039532            4 DYPPGFRFYPTEEELVSFYLHNKLAGHRQDLNLQMDRIIPVINIYDYNPWDLPQFSQLLCHRDPEQWFFFIPRQESEARG   83 (268)
Q Consensus         4 ~LPpGfRF~PTDeELV~~YL~~Ki~g~~~~l~~~~~~~I~~~DVy~~~Pw~Lp~~~~~~~~gd~~~wyFFt~r~~k~~~G   83 (268)
                      +|||||||+|||||||.|||++|+.|.+++     ..+|+++|||.+|||+||+.+   ..++. +||||+++.+++++|
T Consensus        14 ~LPpGfRF~PTDeELV~~YL~~K~~g~~~~-----~~~I~evDvy~~~Pw~Lp~~~---~~g~~-ewYFFs~r~~ky~~g   84 (174)
T 3ulx_A           14 NLPPGFRFHPTDDELVEHYLCRKAAGQRLP-----VPIIAEVDLYKFDPWDLPERA---LFGAR-EWYFFTPRDRKYPNG   84 (174)
T ss_dssp             TCCTTCCCCCCHHHHHHHTHHHHHHTCCCS-----SSCCEECCGGGSCGGGSGGGC---SSCSS-EEEEEEECCC-----
T ss_pred             CCCCcceeCCCHHHHHHHHHHHHhcCCCCC-----cCeeeecccccCCchhhhhhh---ccCCc-eEEEEeccccccCCC
Confidence            799999999999999999999999999886     579999999999999999853   34544 599999999999999


Q ss_pred             CCCccccccceeeecCCCceeecCCCceEEEEEEEEEeecCCCCCCCcCcEEEEEEeCCcCcccCCCCCCCCCCCCceEE
Q 039532           84 GRPNRLTSAGYWKATGSPGLVYSSNNRPVGEKRTMVFYRGRAPNGRKTEWKMNEYKAIDAEASTSSSSATPPPVRHEFSL  163 (268)
Q Consensus        84 ~R~~R~t~~G~Wk~~G~~k~V~~~~g~viG~Krtf~Fy~g~~p~g~kT~W~M~EY~l~~~~~~~~~s~~~~~~~~~e~VL  163 (268)
                      .|++|+|++||||++|+++.|.+. |.+||+||+|+||.|++|++.+|+|+||||+|.......... .......++|||
T Consensus        85 ~R~nR~t~~G~WkatG~dk~I~~~-g~~vG~KktLvFy~g~~p~g~kT~WvMhEY~L~~~~~~~~~~-~~~~~~~~~wVl  162 (174)
T 3ulx_A           85 SRPNRAAGNGYWKATGADKPVAPR-GRTLGIKKALVFYAGKAPRGVKTDWIMHEYRLADAGRAAAGA-KKGSLRLDDWVL  162 (174)
T ss_dssp             CCSCEEETTEEEEECSCCEEECCS-SSCCEEEEEEEEEESSTTSCEEEEEEEEEEEECSCC------------CCSSEEE
T ss_pred             CCceeecCCceEccCCCCcEEeeC-CcEEEEEEEEEEecCCCCCCCcCCeEEEEEEeCCCCCccccc-ccCCCCCCCEEE
Confidence            999999999999999999999876 899999999999999999999999999999999874221111 111234689999


Q ss_pred             EEEEeeCCC
Q 039532          164 CRVYKKSKS  172 (268)
Q Consensus       164 CrVy~k~~~  172 (268)
                      ||||+|++.
T Consensus       163 Crvf~K~~~  171 (174)
T 3ulx_A          163 CRLYNKKNE  171 (174)
T ss_dssp             EEEEESCC-
T ss_pred             EEEEEcCCC
Confidence            999999865

>1ut7_A No apical meristem protein; transcription regulation, transcription, transcription factor, DNA binding, abscisic acid response, NAC domain; 1.9A {Arabidopsis thaliana} SCOP: b.143.1.1 PDB: 1ut4_A 4dul_A 3swp_A 3swm_A

Probab=100.00  E-value=1.5e-53  Score=364.06  Aligned_cols=154  Identities=42%  Similarity=0.891  Sum_probs=126.3

Q ss_pred             CCCCCceeCCChHHHHHHHHHHHHcCCCCCcccccCcceeecCCCCCCCCCcccchhcccCCCCceEEEeecCcccccCC
Q 039532            4 DYPPGFRFYPTEEELVSFYLHNKLAGHRQDLNLQMDRIIPVINIYDYNPWDLPQFSQLLCHRDPEQWFFFIPRQESEARG   83 (268)
Q Consensus         4 ~LPpGfRF~PTDeELV~~YL~~Ki~g~~~~l~~~~~~~I~~~DVy~~~Pw~Lp~~~~~~~~gd~~~wyFFt~r~~k~~~G   83 (268)
                      .|||||||+|||||||.|||++|+.|.+++     ..+|+++|||.+|||+||+.+   ..++. +||||+++.+++++|
T Consensus        16 ~lPpGfRF~PTDeELv~~YL~~K~~g~~~~-----~~~I~e~Diy~~~Pw~Lp~~~---~~g~~-ewyFFs~r~~k~~~g   86 (171)
T 1ut7_A           16 SLPPGFRFYPTDEELMVQYLCRKAAGYDFS-----LQLIAEIDLYKFDPWVLPNKA---LFGEK-EWYFFSPRDRKYPNG   86 (171)
T ss_dssp             CCCTTEEECCCHHHHHHHTHHHHHTTCCCS-----SCCSEECCGGGSCGGGHHHHS---SSCSS-EEEEEEECCC-----
T ss_pred             CCCCcceeCCChHHHHHHHHHHHhcCCCCC-----CCeEeecccccCChhHhhchh---hcCCc-cEEEEeccccccCCC
Confidence            799999999999999999999999999886     679999999999999999953   34544 599999999999999


Q ss_pred             CCCccccccceeeecCCCceeecCCCceEEEEEEEEEeecCCCCCCCcCcEEEEEEeCCcCcccCCCCCCCCCCCCceEE
Q 039532           84 GRPNRLTSAGYWKATGSPGLVYSSNNRPVGEKRTMVFYRGRAPNGRKTEWKMNEYKAIDAEASTSSSSATPPPVRHEFSL  163 (268)
Q Consensus        84 ~R~~R~t~~G~Wk~~G~~k~V~~~~g~viG~Krtf~Fy~g~~p~g~kT~W~M~EY~l~~~~~~~~~s~~~~~~~~~e~VL  163 (268)
                      .|++|+|++||||++|+++.|.+. +.+||+||+|+||.|++|++.+|+|+||||+|.....      .......++|||
T Consensus        87 ~R~~R~t~~G~Wk~tG~~k~I~~~-~~~vG~KktLvFy~g~~p~g~kT~WvMhEY~l~~~~~------~~~~~~~~~~Vl  159 (171)
T 1ut7_A           87 SRPNRVAGSGYWKATGTDKIISTE-GQRVGIKKALVFYIGKAPKGTKTNWIMHEYRLIEPSR------RNGSTKLDDWVL  159 (171)
T ss_dssp             --CCEEETTEEEEEEEEEEEEEET-TEEEEEEEEEEEEESSTTSCEEEEEEEEEEEECCCC--------------CCEEE
T ss_pred             CcccccCCCCEEeccCCCceEEec-CcEEEEEEEEEEEcCcCCCCCcCCeEEEEEEcCCCcc------ccCcccCCCEEE
Confidence            999999999999999999999975 7999999999999999999999999999999998631      112235689999


Q ss_pred             EEEEeeCCCc
Q 039532          164 CRVYKKSKSL  173 (268)
Q Consensus       164 CrVy~k~~~~  173 (268)
                      ||||+|+.+.
T Consensus       160 Crv~~k~~~~  169 (171)
T 1ut7_A          160 CRIYKKQSSA  169 (171)
T ss_dssp             EEEEECC---
T ss_pred             EEEEEcCCCC
Confidence            9999998653

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	268
d1ut7a_	166	b.143.1.1 (A:) No apical meristem (NAM, ANAC) {Mou	2e-51

>d1ut7a_ b.143.1.1 (A:) No apical meristem (NAM, ANAC) {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 166

class: All beta proteins
fold: NAC domain
superfamily: NAC domain
family: NAC domain
domain: No apical meristem (NAM, ANAC)
species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]

 Score =  163 bits (414), Expect = 2e-51
 Identities = 66/164 (40%), Positives = 94/164 (57%), Gaps = 16/164 (9%)

Query: 6   PPGFRFYPTEEELVSFYLHNKLAGHRQDLNLQMDRIIPVINIYDYNPWDLPQFSQLLCHR 65
           PPGFRFYPT+EEL+  YL  K AG+   L      +I  I++Y ++PW LP  +      
Sbjct: 18  PPGFRFYPTDEELMVQYLCRKAAGYDFSLQ-----LIAEIDLYKFDPWVLPNKALF---- 68

Query: 66  DPEQWFFFIPRQESEARGGRPNRLTSAGYWKATGSPGLVYSSNNRPVGEKRTMVFYRGRA 125
             ++W+FF PR      G RPNR+  +GYWKATG+  ++ +   + VG K+ +VFY G+A
Sbjct: 69  GEKEWYFFSPRDRKYPNGSRPNRVAGSGYWKATGTDKIIST-EGQRVGIKKALVFYIGKA 127

Query: 126 PNGRKTEWKMNEYKAIDAEASTSSSSATPPPVRHEFSLCRVYKK 169
           P G KT W M+EY+ I+       S         ++ LCR+YKK
Sbjct: 128 PKGTKTNWIMHEYRLIE------PSRRNGSTKLDDWVLCRIYKK 165

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	268
d1ut7a_	166	No apical meristem (NAM, ANAC) {Mouse-ear cress (A	100.0

>d1ut7a_ b.143.1.1 (A:) No apical meristem (NAM, ANAC) {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]}

class: All beta proteins
fold: NAC domain
superfamily: NAC domain
family: NAC domain
domain: No apical meristem (NAM, ANAC)
species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=100.00  E-value=1.4e-51  Score=348.34  Aligned_cols=151  Identities=42%  Similarity=0.903  Sum_probs=124.2

Q ss_pred             CCCCCceeCCChHHHHHHHHHHHHcCCCCCcccccCcceeecCCCCCCCCCcccchhcccCCCCceEEEeecCcccccCC
Q 039532            4 DYPPGFRFYPTEEELVSFYLHNKLAGHRQDLNLQMDRIIPVINIYDYNPWDLPQFSQLLCHRDPEQWFFFIPRQESEARG   83 (268)
Q Consensus         4 ~LPpGfRF~PTDeELV~~YL~~Ki~g~~~~l~~~~~~~I~~~DVy~~~Pw~Lp~~~~~~~~gd~~~wyFFt~r~~k~~~G   83 (268)
                      +|||||||+|||||||.|||++|+.|.+++     ..+|+++|||.+|||+||+.   ...++. +||||+++++++++|
T Consensus        16 ~LPpG~RF~PTDeELv~~YL~~Ki~g~~l~-----~~~I~~~Dvy~~~Pw~Lp~~---~~~~~~-~wyFft~~~~k~~~g   86 (166)
T d1ut7a_          16 SLPPGFRFYPTDEELMVQYLCRKAAGYDFS-----LQLIAEIDLYKFDPWVLPNK---ALFGEK-EWYFFSPRDRKYPNG   86 (166)
T ss_dssp             CCCTTEEECCCHHHHHHHTHHHHHTTCCCS-----SCCSEECCGGGSCGGGHHHH---SSSCSS-EEEEEEECCC-----
T ss_pred             cCCCccccCCCcHHHHHHHHHHHHcCCCCC-----cccceeccCCcCChhhccch---hccCcc-eEEEEeeeccccCCC
Confidence            799999999999999999999999999886     67999999999999999984   333444 599999999999999


Q ss_pred             CCCccccccceeeecCCCceeecCCCceEEEEEEEEEeecCCCCCCCcCcEEEEEEeCCcCcccCCCCCCCCCCCCceEE
Q 039532           84 GRPNRLTSAGYWKATGSPGLVYSSNNRPVGEKRTMVFYRGRAPNGRKTEWKMNEYKAIDAEASTSSSSATPPPVRHEFSL  163 (268)
Q Consensus        84 ~R~~R~t~~G~Wk~~G~~k~V~~~~g~viG~Krtf~Fy~g~~p~g~kT~W~M~EY~l~~~~~~~~~s~~~~~~~~~e~VL  163 (268)
                      .|++|++++|+||++|+++.|.+ +|.+||+||+|+||.++.+++.+|+|+||||+|.+...      .......++|||
T Consensus        87 ~r~~R~~g~G~Wk~~g~~~~i~~-~g~~vG~kk~l~fy~~~~~~~~~t~W~M~EY~l~~~~~------~~~~~~~~~~VL  159 (166)
T d1ut7a_          87 SRPNRVAGSGYWKATGTDKIIST-EGQRVGIKKALVFYIGKAPKGTKTNWIMHEYRLIEPSR------RNGSTKLDDWVL  159 (166)
T ss_dssp             --CCEEETTEEEEEEEEEEEEEE-TTEEEEEEEEEEEEESSTTSCEEEEEEEEEEEECCCC--------------CCEEE
T ss_pred             CccccccCCCEecccCCCceEec-CCcEEEEEEEEEEEecCCCCCCccCeEEEEEecCCccc------ccCccccCCEEE
Confidence            99999999999999999988876 48999999999999999999999999999999988631      112334679999


Q ss_pred             EEEEeeC
Q 039532          164 CRVYKKS  170 (268)
Q Consensus       164 CrVy~k~  170 (268)
                      ||||+|+
T Consensus       160 CrI~~Kk  166 (166)
T d1ut7a_         160 CRIYKKQ  166 (166)
T ss_dssp             EEEEECC
T ss_pred             EEEEecC
Confidence            9999984