Citrus Sinensis ID: 039541

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-
Protein Sequence
MEHSATPLIPVYQLGLDDQISPVVSLDEMIEQNLANLGLPQFIQVILISLLLIFESQQTFISVYTDEEPTWHCINNTTTCSSSSDICTLSKSAWAWDRPSDTTIISDWSLECAGSSILSGLPSSCFFIGCLLGGLALSTLGDSSSLGRKKLLFLSCFAMSITALATIFANNIWIYSTIRFVAGFFRAPIMTSVIVLLSEMVSKRWRGQVVIIGFTFFSFGLVSLPAVAYLSRGSSWKMLYVWTSIPSIVCCIIIYPFISESPRWLFIHGHEAEAMAVLKRLASRSNYQSDYGLESCCLSNMPPKAKNVIPKLDLYSSLKDLFNRKWALRRLLTIMALAFGIGVVYFGLLLGVGNLSFNIYLSLAFNGLLDIPAYLLTFILIERWSRKSSILTFCILSGTCSAICVAIGDEQEVLQIGLELASFFSACVAFNVLLVFGTELFTTCVRNSTTSLVRQAVNLGAAFSPVLISAGRQNEFLSFGVFGLVVFCFGFFVVFLPETIGVTLCDTLDQQEYFKTGGELC
Secondary Structure (PSIPRED)
cccccccccccccccccccccccccHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccEEEcccccccccHHHHHHHHHHHHHHHccccccccccccHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEcccccHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHcccccccHHHHHHcccHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccHHHHcccHHHHHHHHHHHHHHHHHccccccEEEccccccccHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHccccccccccccHHHHHHcccccccc
Secondary Structure Prediction (SSPRO)
cccccccccccccccccccccccccHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccEEEccccccEEEEEEEEEcccHHHHHHHHHHHHHHHHHHHHHHHHcccccHHcccHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHcHHEEEEEEEEEcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHcccHHHHHHHHHHHHHHcccccccHHHHccHHHHHHHHHHHHHcccccccHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHEcHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHEcEEEEEEHcHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHcHHHcccccccHHHHHHHcccccccc
Coil and Loop (DISEMBL)
mehsatplipvyqlglddqispvvsLDEMIEQNLANLGLPQFIQVILISLLLIFESQQTFISvytdeeptwhcinntttcssssdictlsksawawdrpsdttiisdwslecagssilsglpsscffIGCLLGglalstlgdssslgrkkLLFLSCFAMSITALATIFANNIWIYSTIRFVAGFFRAPIMTSVIVLLSEMVSKRWRGQVVIIGFTFFSfglvslpavaylsrgsswkMLYVWTSIPSIVCCIIiypfisesprwlfihgHEAEAMAVLKRLASRsnyqsdyglescclsnmppkaknvipkldlySSLKDLFNRKWALRRLLTIMALAFGIGVVYFGLLLGVGNLSFNIYLSLAFNGLLDIPAYLLTFILIERwsrkssilTFCILSGTCSAICVAIGDEQEVLQIGLELASFFSACVAFNVLLVFGTELFTTCVRNSTTSLVRQAVNLgaafspvlisagrqneflsFGVFGLVVFCFGFFVvflpetigvtlcdTLDQQEYFKTGGELC
Flexible Loop (DISEMBL)
mehsatplipvyqlgldDQISPVVSLDEMIEQNLANLGLPQFIQVILISLLLIFESQQTFISVYTDEEPTWHCINNtttcssssDICTLSksawawdrpSDTTIISDWSLECAGSSILSGLPSSCFFIGCLLGGLALSTLGDSSSLGRKKLLFLSCFAMSITALATIFANNIWIYSTIRFVAGFFRAPIMTSVIVLLSEMVSKRWRGQVVIIGFTFFSFGLVSLPAVAYLSRGSSWKMLYVWTSIPSIVCCIIIYPFISESPRWLFIHGHEAEAMAVLKRLASRSNYQSDYGLESCCLSNMPPKAKNVIPKLDLYSSLKDLFNRKWALRRLLTIMALAFGIGVVYFGLLLGVGNLSFNIYLSLAFNGLLDIPAYLLTFILIERWSRKSSILTFCILSGTCSAICVAIGDEQEVLQIGLELASFFSACVAFNVLLVFGTELFTTCVRNSTTSLVRQAVNLGAAFSPVLISAGRQNEFLSFGVFGLVVFCFGFFVVFLPETIGVTLCDTLDQQEYFKTGGELC
Low Complexity Region (SEG)
MEHSATPLIPVYQLGLDDQISPVVSLDEMIEQNLANLGLPQFIQVILISLLLIFESQQTFISVYTDEEPTWHCINNtttcssssdictlsksAWAWDRPSDTTIISDWSLECAGSSILSGLPSSCFFIGCLLGGLALSTLGDSSSLGRKKLLFLSCFAMSITALATIFANNIWIYSTIRFVAGFFRAPIMTSVIVLLSEMVSKRWRGQVVIIGFTFFSFGLVSLPAVAYLSRGSSWKMLYVWTSIPSIVCCIIIYPFISESPRWLFIHGHEAEAMAVLKRLASRSNYQSDYGLESCCLSNMPPKAKNVIPKLDLYSSLKDLFNRKWALRRLLTIMALAFgigvvyfglllgvgNLSFNIYLSLAFNGLLDIPAYLLTFILIERWSRKSSILTFCILSGTCSAICVAIGDEQEVLQIGLELASFFSACVAFNVLLVFGTELFTTCVRNSTTSLVRQAVNLGAAFSPVLISAGRQNEflsfgvfglvvfcfgffvvflPETIGVTLCDTLDQQEYFKTGGELC
Disordered region (IsUnstruct)
*******LIPVYQLGLDDQISPVVSLDEMIEQNLANLGLPQFIQVILISLLLIFESQQTFISVYTDEEPTWHCINNTTTCSSSSDICTLSKSAWAWDRPSDTTIISDWSLECAGSSILSGLPSSCFFIGCLLGGLALSTLGDSSSLGRKKLLFLSCFAMSITALATIFANNIWIYSTIRFVAGFFRAPIMTSVIVLLSEMVSKRWRGQVVIIGFTFFSFGLVSLPAVAYLSRGSSWKMLYVWTSIPSIVCCIIIYPFISESPRWLFIHGHEAEAMAVLKRLASRSNYQSDYGLESCCLSNMPPKAKNVIPKLDLYSSLKDLFNRKWALRRLLTIMALAFGIGVVYFGLLLGVGNLSFNIYLSLAFNGLLDIPAYLLTFILIERWSRKSSILTFCILSGTCSAICVAIGDEQEVLQIGLELASFFSACVAFNVLLVFGTELFTTCVRNSTTSLVRQAVNLGAAFSPVLISAGRQNEFLSFGVFGLVVFCFGFFVVFLPETIGVTLCDTLDQQEYF*******
Disordered Region (DISOPRED)
****ATP*****************SLDEMIEQNLANLGLPQFIQVILISLLLIFESQQTFISVYTDEEPTWHCINNTTTCSSSSDICTLSKSAWAWDRPSDTTIISDWSLECAGSSILSGLPSSCFFIGCLLGGLALSTLGDSSSLGRKKLLFLSCFAMSITALATIFANNIWIYSTIRFVAGFFRAPIMTSVIVLLSEMVSKRWRGQVVIIGFTFFSFGLVSLPAVAYLSRGSSWKMLYVWTSIPSIVCCIIIYPFISESPRWLFIHGHEAEAMAVLKRLASRSNYQSDYGLES**********************LKDLFNRKWALRRLLTIMALAFGIGVVYFGLLLGVGNLSFNIYLSLAFNGLLDIPAYLLTFILIERWSRKSSILTFCILSGTCSAICVAIGDEQEVLQIGLELASFFSACVAFNVLLVFGTELFTTCVRNSTTSLVRQAVNLGAAFSPVLISAGRQNEFLSFGVFGLVVFCFGFFVVFLPETIGVTLCDTLDQQEYFK******
Disordered Region (DISEMBL)
MEHSATPLIPVYQLGLDDQISPVVSLDEMIEQNLANLGLPQFIQVILISLLLIFESQQTFISVYTDEEPTWHCINNTTTCSSSSDICTLSKSAWAWDRPSDTTIISDWSLECAGSSILSGLPSSCFFIGCLLGGLALSTLGDSSSLGRKKLLFLSCFAMSITALATIFANNIWIYSTIRFVAGFFRAPIMTSVIVLLSEMVSKRWRGQVVIIGFTFFSFGLVSLPAVAYLSRGSSWKMLYVWTSIPSIVCCIIIYPFISESPRWLFIHGHEAEAMAVLKRLASRSNYQSDYGLESCCLSNMPPKAKNVIPKLDLYSSLKDLFNRKWALRRLLTIMALAFGIGVVYFGLLLGVGNLSFNIYLSLAFNGLLDIPAYLLTFILIERWSRKSSILTFCILSGTCSAICVAIGDEQEVLQIGLELASFFSACVAFNVLLVFGTELFTTCVRNSTTSLVRQAVNLGAAFSPVLISAGRQNEFLSFGVFGLVVFCFGFFVVFLPETIGVTLCDTLDQQEYFKTGGELC
Disordered Region (DISPRO)
*********************PVVSLDEMIEQNLANLGLPQFIQVILISLLLIFESQQTFISVYTDEEPTWHCINNT********ICTLSKSAWAWDRPSDTTIISDWSLECAGSSILSGLPSSCFFIGCLLGGLALSTLGDSSSLGRKKLLFLSCFAMSITALATIFANNIWIYSTIRFVAGFFRAPIMTSVIVLLSEMVSKRWRGQVVIIGFTFFSFGLVSLPAVAYLSRGSSWKMLYVWTSIPSIVCCIIIYPFISESPRWLFIHGHEAEAMAVLKRLASRSNYQSDYGLESCCLSNMPPKAKNVIPKLDLYSSLKDLFNRKWALRRLLTIMALAFGIGVVYFGLLLGVGNLSFNIYLSLAFNGLLDIPAYLLTFILIERWSRKSSILTFCILSGTCSAICVAIGDEQEVLQIGLELASFFSACVAFNVLLVFGTELFTTCVRNSTTSLVRQAVNLGAAFSPVLISAGRQNEFLSFGVFGLVVFCFGFFVVFLPETIGVTLCDTLDQQEYF*******
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiHHHHHHHHHHHHHHHHHHHooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiHHHHHHHHHHHHHHHHHHHHHHHHooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiHHHHHHHHHHHHHHHHHHHHHHHHooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiHHHHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooooHHHHHHHHHHHHHHHHHHHHHHHHHHHHHiiiHHHHHHHHHHHHHHHHHHHHHHHHHHooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHoooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHoooooooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MEHSATPLIPVYQLGLDDQISPVVSLDEMIEQNLANLGLPQFIQVILISLLLIFESQQTFISVYTDEEPTWHCINNTTTCSSSSDICTLSKSAWAWDRPSDTTIISDWSLECAGSSILSGLPSSCFFIGCLLGGLALSTLGDSSSLGRKKLLFLSCFAMSITALATIFANNIWIYSTIRFVAGFFRAPIMTSVIVLLSEMVSKRWRGQVVIIGFTFFSFGLVSLPAVAYLSRGSSWKMLYVWTSIPSIVCCIIIYPFISESPRWLFIHGHEAEAMAVLKRLASRSNYQSDYGLESCCLSNMPPKAKNVIPKLDLYSSLKDLFNRKWALRRLLTIMALAFGIGVVYFGLLLGVGNLSFNIYLSLAFNGLLDIPAYLLTFILIERWSRKSSILTFCILSGTCSAICVAIGDEQEVLQIGLELASFFSACVAFNVLLVFGTELFTTCVRNSTTSLVRQAVNLGAAFSPVLISAGRQNEFLSFGVFGLVVFCFGFFVVFLPETIGVTLCDTLDQQEYFKTGGELC
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	521	2.2.26 [Sep-21-2011]
O64515	527	Organic cation/carnitine	yes	no	0.961	0.950	0.485	1e-142
Q9SA38	518	Organic cation/carnitine	no	no	0.967	0.972	0.458	1e-134
Q9SA36	521	Organic cation/carnitine	no	no	0.919	0.919	0.434	1e-117
Q9SAK7	515	Organic cation/carnitine	no	no	0.961	0.972	0.422	1e-116
Q9CAT6	539	Organic cation/carnitine	no	no	0.905	0.875	0.368	5e-82
Q9LHQ6	526	Organic cation/carnitine	no	no	0.932	0.923	0.304	7e-60
O76082	557	Solute carrier family 22	yes	no	0.771	0.721	0.291	1e-38
Q9Z0E8	557	Solute carrier family 22	yes	no	0.777	0.727	0.281	7e-37
O70594	557	Solute carrier family 22	yes	no	0.775	0.725	0.273	1e-36
Q9WTN6	564	Solute carrier family 22	no	no	0.786	0.726	0.278	3e-36

>sp|O64515|OCT2_ARATH Organic cation/carnitine transporter 2 OS=Arabidopsis thaliana GN=OCT2 PE=2 SV=1

 Score =  504 bits (1299), Expect = e-142,   Method: Compositional matrix adjust.
 Identities = 248/511 (48%), Positives = 354/511 (69%), Gaps = 10/511 (1%)

Query: 10  PVYQLGLDDQISPVVSLDEMIEQNLANLGLPQFIQVILISLLLIFESQQTFISVYTDEEP 69
           P   L  D   S   SLD+ IE  + + G  QF+Q  L+S   +F++QQTFISV+TD EP
Sbjct: 4   PTQPLLTDSNSSSPRSLDDTIESYIGSFGWAQFLQAALVSFSGVFDAQQTFISVFTDSEP 63

Query: 70  TWHCINNTTTCSSS-SDICTLSKSAWAWDRPSDTTIISDWSLECAGSSILSGLPSSCFFI 128
           TWHC ++ + C  S S+IC L K+AW+WD     ++IS+W L+CAGS  + GLP S FF+
Sbjct: 64  TWHCTDSNSICHESISNICILPKTAWSWDYSPHVSVISEWGLQCAGS-FVKGLPESSFFV 122

Query: 129 GCLLGGLALSTLGDSSSLGRKKLLFLSCFAMSITALATIFANNIWIYSTIRFVAGFFRAP 188
           GCL+GGL LSTL DSS LGRK +LFLSC  M+I+ + T+F+ NIW+Y+ +RFV GF RA 
Sbjct: 123 GCLIGGLVLSTLADSS-LGRKNMLFLSCLVMAISTMLTVFSPNIWVYAVLRFVNGFGRAT 181

Query: 189 IMTSVIVLLSEMVSKRWRGQVVIIGFTFFSFGLVSLPAVAYLSRGSSWKMLYVWTSIPSI 248
           I T  +VL +E+V K+WRG+V I+ F  F  G +SLP +AY++RGSSW++LY WTSIP+I
Sbjct: 182 IGTCALVLSTELVGKKWRGRVGIMSFFGFMLGFLSLPLMAYMNRGSSWRILYAWTSIPTI 241

Query: 249 VCCIIIYPFISESPRWLFIHGHEAEAMAVLKRLAS-RSNYQSDYGLESCCLSNMPPKAKN 307
           + C+++  F+ ESPRWLF+ G   EA+++LKR+AS  S   S  G  S   S++P +   
Sbjct: 242 IYCVLVRFFVCESPRWLFVRGRREEAISILKRVASIPSTDVSSGGAISMSFSSLPFEEDE 301

Query: 308 VIP--KLDLYSSLKDLFNRKWALRRLLTIMALAFGIGVVYFGLLLGVGNLSFNIYLSLAF 365
             P   +++++++K L  ++WAL+RL  +MA+AFGIG+VY+G+ L + NL FNIYLS AF
Sbjct: 302 EKPSTNVNIFTTMKVLVEKRWALKRLSAVMAIAFGIGLVYYGMPLALSNLDFNIYLSAAF 361

Query: 366 NGLLDIPAYLLTFILIERWSRKSSILTFCILSGTCSAICVAIGD----EQEVLQIGLELA 421
           N L+D+PA L+T  L+++ SR+++++ F  L G  S +  A+ +        LQ+ LEL 
Sbjct: 362 NALMDLPANLITLFLVDKLSRRNALIGFTALGGVSSVLIFALHNMRIGNHGALQLALELI 421

Query: 422 SFFSACVAFNVLLVFGTELFTTCVRNSTTSLVRQAVNLGAAFSPVLISAGRQNEFLSFGV 481
           S+FSAC AFN+ +++  ELF TCVRNS  ++ RQA+ LG  FSP++++AGR+N F SFG+
Sbjct: 422 SYFSACSAFNMEMIYTIELFPTCVRNSAIAMARQALVLGGVFSPIMVAAGRKNAFWSFGL 481

Query: 482 FGLVVFCFGFFVVFLPETIGVTLCDTLDQQE 512
           FGL +   G F V LPET G  LCDT+D++E
Sbjct: 482 FGLAIGLLGLFAVGLPETRGSDLCDTMDEEE 512

High affinity carnitine transporter involved in the active cellular uptake of carnitine. Also transports organic cations.
Arabidopsis thaliana (taxid: 3702)

>sp|Q9SA38|OCT3_ARATH Organic cation/carnitine transporter 3 OS=Arabidopsis thaliana GN=OCT3 PE=2 SV=1

 Score =  478 bits (1231), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 237/517 (45%), Positives = 348/517 (67%), Gaps = 13/517 (2%)

Query: 1   MEHSATPLIPVYQLGLDDQISPVVSLDEMIEQNLANLGLPQFIQVILISLLLIFESQQTF 60
           M  S  PL+  +    +  + P  SL+E IE+ + + G  QF+Q  L+S    F++QQTF
Sbjct: 1   MADSTRPLLSDFNSS-ESNLPPPRSLEETIERCIGDFGWAQFLQAALVSFAWFFDAQQTF 59

Query: 61  ISVYTDEEPTWHCIN----NTTTCSSSSDICTLSKSAWAWDRPSDTTIISDWSLECAGSS 116
           I+V+TD +P WHC N    ++   +SSS++CTL    W+WD     +IIS+W L+CAGS 
Sbjct: 60  ITVFTDSQPMWHCDNSDRVDSVCNTSSSNLCTLPNQTWSWDLNPHVSIISEWGLQCAGS- 118

Query: 117 ILSGLPSSCFFIGCLLGGLALSTLGDSSSLGRKKLLFLSCFAMSITALATIFANNIWIYS 176
            L G P+S FF+GCL+GGLALSTL DSS LGRK +L LSC  MS++++ T F+ +IW+Y+
Sbjct: 119 FLKGFPASSFFLGCLIGGLALSTLADSS-LGRKNMLLLSCLIMSLSSMLTAFSTSIWVYA 177

Query: 177 TIRFVAGFFRAPIMTSVIVLLSEMVSKRWRGQVVIIGFTFFSFGLVSLPAVAYLSRGSSW 236
            +RF+ G  RA I T  +VL +E+V K+WRGQV  +GF  F+ G +SLP + Y++ G+SW
Sbjct: 178 FLRFLNGCGRATIGTCALVLSTELVGKKWRGQVGAMGFFCFTLGFLSLPMLGYINEGNSW 237

Query: 237 KMLYVWTSIPSIVCCIIIYPFISESPRWLFIHGHEAEAMAVLKRLASRSNYQSDYGLESC 296
           + LYVWTSIP+++ C ++  F+ ESPRWL + G + EA+++L+ +AS +   S     + 
Sbjct: 238 RNLYVWTSIPTLIYCCLVRSFVRESPRWLIVKGRKEEAVSILQSIASNAITMS---FTNL 294

Query: 297 CLSNMPPKAKNVIPKLDLYSSLKDLFNRKWALRRLLTIMALAFGIGVVYFGLLLGVGNLS 356
           C      ++K+     D+Y +LK L  + W+ RRLL  M + FGIG+VY+G+ L + NL+
Sbjct: 295 CFEVENDQSKS---NPDVYDALKILVRKSWSFRRLLAAMVVGFGIGMVYYGMPLALTNLN 351

Query: 357 FNIYLSLAFNGLLDIPAYLLTFILIERWSRKSSILTFCILSGTCSAICVAIGDEQEVLQI 416
           FN+YL + FN L + PA+L+TF  I++ +R+ +++ F  LSG  SA+   +G +   LQI
Sbjct: 352 FNLYLGVVFNALSEFPAFLITFFFIDKINRRDALIGFTALSGISSALIAVLGQQLGSLQI 411

Query: 417 GLELASFFSACVAFNVLLVFGTELFTTCVRNSTTSLVRQAVNLGAAFSPVLISAGRQNEF 476
            LEL SFFSAC AFN+ L++  E+F TCVRNS  S+VRQA+  G  FSPV+++AGR+N+F
Sbjct: 412 VLELVSFFSACTAFNMTLIYTIEMFPTCVRNSAISMVRQALVFGGVFSPVMVAAGRENQF 471

Query: 477 LSFGVFGLVVFCFGFFVVFLPETIGVTLCDTLDQQEY 513
            S+G+FGL++   G FV  LPET G  LCDT+D++EY
Sbjct: 472 WSYGLFGLIIGLCGLFVFGLPETRGSVLCDTMDEEEY 508

High affinity carnitine transporter involved in the active cellular uptake of carnitine. Also transports organic cations.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SA36|OCT6_ARATH Organic cation/carnitine transporter 6 OS=Arabidopsis thaliana GN=OCT6 PE=2 SV=1

 Score =  422 bits (1084), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 214/492 (43%), Positives = 332/492 (67%), Gaps = 13/492 (2%)

Query: 24  VSLDEMIEQNLANLGLPQFIQVILISLLLIFESQQTFISVYTDEEPTWHCINNTTTCSSS 83
           ++ D+++EQ+L++ G  QF Q+ L+ L L+F++QQ FI+VYTD  PTWHC+N+T    S+
Sbjct: 28  LTFDKIVEQSLSDFGFWQFFQISLVGLALLFDAQQIFITVYTDAYPTWHCLNHTICDPSA 87

Query: 84  SDICTLSKSAWAWDRPSD-TTIISDWSLECAGSSILSGLPSSCFFIGCLLGGLALSTLGD 142
           SDIC L +SAW WD  S   ++IS++ LEC+ SS+L G+PSS F+IG ++GG  L+ + D
Sbjct: 88  SDICKLPRSAWEWDGGSQGKSVISEFGLECS-SSLLRGMPSSAFYIGAIVGGFFLALIPD 146

Query: 143 SSSLGRKKLLFLSCFAMSITALATIFANNIWIYSTIRFVAGFFRAPIMTSVIVLLSEMVS 202
            S LGRKKL+  S FAMSIT+++ IF+ N+WIY+ ++F+ GF R+   +  +VL+SE VS
Sbjct: 147 DS-LGRKKLVLFSTFAMSITSISVIFSTNVWIYTFLKFIIGFSRSQTWSYALVLISERVS 205

Query: 203 KRWRGQVVIIGFTFFSFGLVSLPAVAYLSRGSSWKMLYVWTSIPSIVCCIIIYPFISESP 262
            RWR +  +I FT F  G +SL  +A+L++ SSW+ LY++TS+P++  CI +Y F  ESP
Sbjct: 206 TRWRPRATMIPFTLFVLGFMSLSGIAFLAQDSSWRYLYLYTSVPAVFYCIFLYLFALESP 265

Query: 263 RWLFIHGHEAEAMAVLKRLASRSNYQSDYGLESCCLSNMPPKAKNVIPKLDLYSSLKDLF 322
           RWL + G + EA+ VL +++ +        LES  +S +P K +N   +   Y S+KD F
Sbjct: 266 RWLHMQGKDKEAIDVLTKMSPKEKAY----LES-VVSKLPLKQEN-FEQAPTY-SIKDFF 318

Query: 323 NRKWALRRLLTIMALAFGIGVVYFGLLLGVGNLSFNIYLSLAFNGLLDIPAYLLTFILIE 382
            RKWA RR+L +M + FG+G+ Y+G+ L   ++  NIYLS   N L+++P +++T IL+E
Sbjct: 319 FRKWAFRRILVVMIIMFGLGISYYGVPLAARDIDVNIYLSETLNALVELPTFVITPILLE 378

Query: 383 RWSRKSSILTFCILSGTCSAIC--VAIGDEQEVLQIGLELASFFSACVAFNVLLVFGTEL 440
           R++R+SS+L   +L G    +C  ++I  + E+     EL +FF A + FN++ VF  E+
Sbjct: 379 RFNRRSSVLVNTLLGGASGVLCFVLSILGKTEI-AFAFELGTFFCARIGFNLMAVFMVEM 437

Query: 441 FTTCVRNSTTSLVRQAVNLGAAFSPVLISAGRQNEFLSFGVFGLVVFCFGFFVVFLPETI 500
           F TCVR+S T + RQA+ +G A  P++ S GR    +SF +FG+ +   G FV+ LPET 
Sbjct: 438 FPTCVRSSATMMFRQALVVGGACCPLIASIGRYIPSVSFAIFGIAMSGLGMFVLILPETK 497

Query: 501 GVTLCDTLDQQE 512
           G++LCD++++QE
Sbjct: 498 GLSLCDSMEEQE 509

High affinity carnitine transporter involved in the active cellular uptake of carnitine. Also transports organic cations.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SAK7|OCT5_ARATH Organic cation/carnitine transporter 5 OS=Arabidopsis thaliana GN=OCT5 PE=2 SV=1

 Score =  421 bits (1081), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 217/514 (42%), Positives = 335/514 (65%), Gaps = 13/514 (2%)

Query: 1   MEHSATPLIPVYQLGLDDQISPVVSLDEMIEQNLANLGLPQFIQVILISLLLIFESQQTF 60
           M  S  PL+P +    +D  SP+ + D+++E++L++ G  QF+Q++L+ L L F+SQQ F
Sbjct: 1   MADSLAPLLPTHIEEDEDTSSPL-TFDKILEKSLSDFGFSQFLQIVLVGLALTFDSQQIF 59

Query: 61  ISVYTDEEPTWHCINNTTTCSSSSDICTLSKSAWAWDRP-SDTTIISDWSLECAGSSILS 119
           I+V+TD  PTWHC+++T    +++DIC + +SAW WD      ++IS++ LEC+ SS L 
Sbjct: 60  ITVFTDAYPTWHCLDHTICNPATTDICKIPRSAWDWDGGFKGKSVISEFDLECS-SSFLR 118

Query: 120 GLPSSCFFIGCLLGGLALSTLGDSSSLGRKKLLFLSCFAMSITALATIFANNIWIYSTIR 179
            LPSS F++G ++GG+ L+ + D S LGRK+LLF S FAMS+T ++   ++NIWIYS ++
Sbjct: 119 SLPSSTFYVGSIVGGVVLAMIPDGS-LGRKQLLFFSSFAMSLTGISIFLSSNIWIYSFLK 177

Query: 180 FVAGFFRAPIMTSVIVLLSEMVSKRWRGQVVIIGFTFFSFGLVSLPAVAYLSRGSSWKML 239
           FV GF R+   T  +VL+SE +S +WR +  ++ FT F  G +SL  +AYL R +SWK+L
Sbjct: 178 FVIGFARSQTGTYALVLISERISTKWRPRATMVPFTLFVLGFMSLSGIAYLVRHASWKVL 237

Query: 240 YVWTSIPSIVCCIIIYPFISESPRWLFIHGHEAEAMAVLKRLASRSNYQSDYGLESCCLS 299
           Y+ TSIP+ +  I IY F  ESPRWL + G   EA+ VLKR++      ++ G      S
Sbjct: 238 YLCTSIPAGIHSIFIYFFALESPRWLHLEGKNKEAIEVLKRIS-----PANRGYLESVSS 292

Query: 300 NMPPKAKNVIPKLDLYSSLKDLFNRKWALRRLLTIMALAFGIGVVYFGLLLGVGNLSFNI 359
            + P  K  + +   Y S+KDLF  KWA RR+  +M + FG+G+ Y+G+ L V ++  NI
Sbjct: 293 RLRP--KETLEQTSSY-SIKDLFIIKWAFRRVTLVMIIMFGLGMSYYGVPLAVRDIKVNI 349

Query: 360 YLSLAFNGLLDIPAYLLTFILIERWSRKSSILTFCILSGTCSAICVAIG-DEQEVLQIGL 418
           Y+S A N ++++P +++T IL+E++SR+SS+L  C++ G    +C  +    +  +   L
Sbjct: 350 YMSEALNAMVELPTFVVTPILLEQFSRRSSVLVNCLIGGASGVLCFVMSLYGRTKIAFAL 409

Query: 419 ELASFFSACVAFNVLLVFGTELFTTCVRNSTTSLVRQAVNLGAAFSPVLISAGRQNEFLS 478
           EL SFF A + FN++ ++  ELF TCVRNS T ++RQA+ +G A  P++ S GR    LS
Sbjct: 410 ELGSFFCARIGFNLMAIYLVELFPTCVRNSATMMLRQALVVGGACCPLIASLGRNVPSLS 469

Query: 479 FGVFGLVVFCFGFFVVFLPETIGVTLCDTLDQQE 512
           F VFG  +   G F + LPET G++LCDT+++QE
Sbjct: 470 FAVFGFAMSGLGLFALLLPETKGLSLCDTMEEQE 503

High affinity carnitine transporter involved in the active cellular uptake of carnitine. Also transports organic cations.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9CAT6|OCT1_ARATH Organic cation/carnitine transporter 1 OS=Arabidopsis thaliana GN=OCT1 PE=2 SV=1

 Score =  305 bits (781), Expect = 5e-82,   Method: Compositional matrix adjust.
 Identities = 184/499 (36%), Positives = 278/499 (55%), Gaps = 27/499 (5%)

Query: 24  VSLDEMIEQNLANLGLPQFIQVILISLLLIFESQQTFISVYTDEEPTWHCINNTTTCSSS 83
           +++DE+IEQ++  LG  Q +  +L+S+  IF++Q T IS+++D +P    +        +
Sbjct: 43  LTVDEVIEQHIGALGFAQILHALLVSIAWIFDAQTTLISIFSDAQPAARLLATGAIVEGA 102

Query: 84  SDICTLSKSAWAWDRPSDTTIISDWSLECAGSSILSGLPSSCFFIGCLLGGLALSTLGDS 143
           S +C L+   W W  P   T++S+W+L C     L  +PS+ FFIG L G      L DS
Sbjct: 103 S-LCGLASGEWEWIGPKSDTVVSEWNLICQ-HKFLVAVPSTLFFIGSLFGSGVYGYLADS 160

Query: 144 SSLGRKKLLFLSCFAMSITALATIFANNIWIYSTIRFVAGFFRAPIMTSVIVLLSEMVSK 203
              GRKK L LSC    +TA A  F+ N+W+Y+ +RF  GFFR+ I +  IVL +E+V K
Sbjct: 161 W-FGRKKTLLLSCVLTFVTAFAISFSPNVWVYAFLRFANGFFRSGIGSCCIVLATEIVGK 219

Query: 204 RWRGQVVIIGFTFFSFGLVSLPAVAYLSRGSSWKMLYVWTSIPSIVCCIIIYPFISESPR 263
           +WRGQV   GF FF+ G +SLP +AYL R  SW+ LY   S   +   + + PF  ESPR
Sbjct: 220 KWRGQVGQYGFFFFTLGFLSLPLMAYLER-KSWRNLYRIISFLPLGYAVCLLPFAYESPR 278

Query: 264 WLFIHGHEAEAMAVLKRLASRSNYQSDYGLESCCLSNMPPKAKNVIP---KLDLYSSLKD 320
           WL + G   EAM VLK+LA  +  Q            +P     V P   + D  SS + 
Sbjct: 279 WLLVKGRNKEAMVVLKKLARLNGKQ------------LPADLSLVDPIPERDDQTSSSEK 326

Query: 321 LFNRKWALRRLLTIMALAFGIGVVYFGLLLGVGNLSFNIYLSLAFNGLLDIPAYLLTFIL 380
            +  KWA++R++ +M   FG G VY+G+ L   NL+FN+YL++A N L++ PA  +   L
Sbjct: 327 FWKTKWAVKRIIMVMMAGFGSGFVYYGIQLNAENLNFNLYLTVAVNALMEFPAVFIGSFL 386

Query: 381 IERWSRKSSILTFCILSGTCSAICVAIGDEQEV--------LQIGLELASFFSACVAFNV 432
           +   +R+        L+G    +C  +   + +        LQ+ +E   F ++  A++V
Sbjct: 387 LGVMNRRPLFSNSSYLAGFACLLCAVLSIHRVIRAISVAKWLQLAVEAVGFMASSTAYDV 446

Query: 433 LLVFGTELFTTCVRNSTTSLVRQAVNLGAAFSPVLISAGRQNEFLSFGVFGLVVFCFGFF 492
           L V+  ELF T VRN+  SL+RQA  LGA+ +P+L++ GR++  +SF VFG+     G  
Sbjct: 447 LYVYCVELFPTNVRNTAVSLLRQAFMLGASAAPLLVALGRESAMMSFIVFGVASVLSGIV 506

Query: 493 VVFLPETIGVTLCDTLDQQ 511
            ++L ET    L +TL QQ
Sbjct: 507 SLWLRETRNAPLYETLAQQ 525

High affinity carnitine transporter involved in the active cellular uptake of carnitine. Also transports organic cations. Regulates lateral root development.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LHQ6|OCT4_ARATH Organic cation/carnitine transporter 4 OS=Arabidopsis thaliana GN=OCT4 PE=2 SV=1

 Score =  231 bits (590), Expect = 7e-60,   Method: Compositional matrix adjust.
 Identities = 155/509 (30%), Positives = 254/509 (49%), Gaps = 23/509 (4%)

Query: 7   PLIPVYQLGLDDQISPVVSLDEMIEQNLANLGLPQFIQVILISLLLIFESQQTFISVYTD 66
           PL+    +  + +    + +DEM+++     G  Q    +L  +    E+  T + ++ D
Sbjct: 15  PLLEKIPVKKEAEGEERLCIDEMLQRYCGEFGRWQLKHFVLTCIAWALEAFHTMVMIFAD 74

Query: 67  EEPTWHCINNTTTCSSSSDICTLSKSAWAWDRPSDTTIISDWSLECAGSSILSGLPSSCF 126
           +EP W C+   + C   S  C L  S+W W     ++ +S+W L C G     GL  + F
Sbjct: 75  QEPEWRCVG--SDCRVGSLNCELDPSSWEWTAGKGSSTVSEWGLIC-GDKYKVGLVQALF 131

Query: 127 FIGCLLGGLALSTLGDSSSLGRKKLLFLSCFAMSITALATIFANNIWIYSTIRFVAGFFR 186
           F GC++G      L DS  LGRK  L + C   +I  +AT F+ N W Y  +RF+ GF  
Sbjct: 132 FAGCMIGAGVFGHLSDSK-LGRKGSLTVVCIINAIFGIATAFSPNYWTYVVLRFLTGFST 190

Query: 187 APIMTSVIVLLSEMVSKRWRGQVVIIGFTFFSFGLVSLPAVAYLSRGSSWKMLYVWTSIP 246
             +  +  VL +E +    RG   +  F FFS G+  L  +AY+ R  SW+ L++ +S+P
Sbjct: 191 GGVGLTAFVLATEPIGPSKRGVAGMSTFYFFSAGIAVLSGIAYVFR--SWRELFIVSSLP 248

Query: 247 SIVCCIIIYPFISESPRWLFIHGHEAEAMAVLKRLASRSNYQSDYGLESCCLSNMPPKAK 306
           S++  +I+ PFISESPRW  + G   EAM ++  +A  +      G+      ++  +  
Sbjct: 249 SLLFLLIVIPFISESPRWYLVRGKVDEAMKLMHSIAKTNGRHIPAGVTLALDDDV--ENN 306

Query: 307 NVIPKLDLYSSLKDLFNRKWALRRLLTIMALAFGIGVVYFGLLLGVGNLSFNIYLSLAFN 366
           N      +  SLKD+        RL+  +A++F + +VY+GL L VGNL  N+YL++  N
Sbjct: 307 NGERNTAVEGSLKDVILSPLMRMRLVISVAISFTVSIVYYGLSLNVGNLKTNLYLNVFVN 366

Query: 367 GLLDIPAYLLTFILIERWSRKS-SILT------FCILSGTCSAICVAIGDEQEVLQIGLE 419
            + ++PA+ +T +L++++ RK  SI T      FC++  +        G  + V  +   
Sbjct: 367 AVSEMPAFAITAVLLDKYGRKPLSIGTQWFSCVFCLVGFSVW----GAGPWKSVRMVSGV 422

Query: 420 LASFFSACVAFNVLLVFGTELFTTCVRNSTTSLVRQAVNLGAAFSPVLISAGRQNEFLSF 479
           L   F     +N+L ++  ELF T VRN+      QA  +GA  +P ++  G +   L F
Sbjct: 423 LG-IFGMAGTYNLLFIYIAELFPTVVRNAALGCATQAAQMGAILAPFVVVLGEE---LPF 478

Query: 480 GVFGLVVFCFGFFVVFLPETIGVTLCDTL 508
           GVF +     G    +LPET+   L DT+
Sbjct: 479 GVFAVCGLVGGGLAFYLPETLNKPLYDTM 507

High affinity carnitine transporter involved in the active cellular uptake of carnitine. Also transports organic cations.

Arabidopsis thaliana (taxid: 3702)

>sp|O76082|S22A5_HUMAN Solute carrier family 22 member 5 OS=Homo sapiens GN=SLC22A5 PE=1 SV=1

 Score =  161 bits (407), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 123/422 (29%), Positives = 209/422 (49%), Gaps = 20/422 (4%)

Query: 95  AWDRPSD---TTIISDWSLECAGSSILSGLPSSCFFIGCLLGGLALSTLGDSSSLGRKKL 151
            W+   D   +TI+++W+L C      + L  S FF+G LLG      L D    GRK +
Sbjct: 116 GWEFSQDVYLSTIVTEWNLVCE-DDWKAPLTISLFFVGVLLGSFISGQLSDR--FGRKNV 172

Query: 152 LFLSCFAMSITALATIFANNIWIYSTIRFVAGFFRAPIMTSVIVLLSEMVSKRWRGQVVI 211
           LF++    +  +   IF+ N  ++  +  + G  +     +  VL +E++ K  R     
Sbjct: 173 LFVTMGMQTGFSFLQIFSKNFEMFVVLFVLVGMGQISNYVAAFVLGTEILGKSVRIIFST 232

Query: 212 IGF-TFFSFGLVSLPAVAYLSRGSSWKMLYVWTSIPSIVCCIIIYPFISESPRWLFIHGH 270
           +G   F++FG + LP  AY  R   W+ML V  ++P  V C+ ++ FI ESPRWL   G 
Sbjct: 233 LGVCIFYAFGYMVLPLFAYFIR--DWRMLLVALTMPG-VLCVALWWFIPESPRWLISQGR 289

Query: 271 EAEAMAVLKRLASRSNYQSDYGLESCCLSNMPPKAKNVIPKLDLYSSLKDLFNRKWALRR 330
             EA  ++++ A+++N     G+        P + +++  K     ++ DL  R W +R 
Sbjct: 290 FEEAEVIIRK-AAKAN-----GIVVPSTIFDPSELQDLSSKKQQSHNILDLL-RTWNIR- 341

Query: 331 LLTIMA--LAFGIGVVYFGLLLGVGNLSFNIYLSLAFNGLLDIPAYLLTFILIERWSRKS 388
           ++TIM+  L   I V YFGL L   NL  +I+++   + ++++PAY+L ++L++   R+ 
Sbjct: 342 MVTIMSIMLWMTISVGYFGLSLDTPNLHGDIFVNCFLSAMVEVPAYVLAWLLLQYLPRRY 401

Query: 389 SILTFCILSGTCSAICVAIGDEQEVLQIGLELASFFSACVAFNVLLVFGTELFTTCVRNS 448
           S+ T   L G+       +  +   L   L +   F    AF+++ V+  EL+ T VRN 
Sbjct: 402 SMATALFLGGSVLLFMQLVPPDLYYLATVLVMVGKFGVTAAFSMVYVYTAELYPTVVRNM 461

Query: 449 TTSLVRQAVNLGAAFSPVLISAGRQNEFLSFGVFGLVVFCFGFFVVFLPETIGVTLCDTL 508
              +   A  LG+  SP  +  G  + FL + + G +        +FLPE+ G  L DT+
Sbjct: 462 GVGVSSTASRLGSILSPYFVYLGAYDRFLPYILMGSLTILTAILTLFLPESFGTPLPDTI 521

Query: 509 DQ 510
           DQ
Sbjct: 522 DQ 523

Sodium-ion dependent, high affinity carnitine transporter. Involved in the active cellular uptake of carnitine. Transports one sodium ion with one molecule of carnitine. Also transports organic cations such as tetraethylammonium (TEA) without the involvement of sodium. Also relative uptake activity ratio of carnitine to TEA is 11.3.

Homo sapiens (taxid: 9606)

>sp|Q9Z0E8|S22A5_MOUSE Solute carrier family 22 member 5 OS=Mus musculus GN=Slc22a5 PE=1 SV=1

 Score =  155 bits (392), Expect = 7e-37,   Method: Compositional matrix adjust.
 Identities = 119/423 (28%), Positives = 205/423 (48%), Gaps = 18/423 (4%)

Query: 92  SAWAWDRPSD-TTIISDWSLECAGSSILSGLPSSCFFIGCLLGGLALSTLGDSSSLGRKK 150
             W +D+    +TI+++W L C      + L +S FF+G L+G      L D    GRK 
Sbjct: 115 DGWEYDKDVFLSTIVTEWDLVCK-DDWKAPLTTSLFFVGVLMGSFISGQLSDR--FGRKN 171

Query: 151 LLFLSCFAMSITALATIFANNIWIYSTIRFVAGFFRAPIMTSVIVLLSEMVSKRWRGQVV 210
           +LFL+    +  +   +F+ N  +++ +  + G  +     +  VL +E++SK  R    
Sbjct: 172 VLFLTMGMQTGFSFLQVFSVNFEMFTVLFVLVGMGQISNYVAAFVLGTEILSKSIRIIFA 231

Query: 211 IIGF-TFFSFGLVSLPAVAYLSRGSSWKMLYVWTSIPSIVCCIIIYPFISESPRWLFIHG 269
            +G   F++FG + LP  AY  R   W+ML +  ++P ++C  + + FI ESPRWL   G
Sbjct: 232 TLGVCIFYAFGFMVLPLFAYFIR--DWRMLLLALTVPGVLCGALWW-FIPESPRWLISQG 288

Query: 270 HEAEAMAVLKRLASRSNYQSDYGLESCCLSNMPPKAKNVIPKLDLYSSLKDLFNRKWALR 329
              EA  ++++ A++ N     G+ +      P + +++         + DL   +    
Sbjct: 289 RIKEAEVIIRK-AAKIN-----GIVAPSTIFDPSELQDLNSTKPQLHHIYDLIRTRNI-- 340

Query: 330 RLLTIMA--LAFGIGVVYFGLLLGVGNLSFNIYLSLAFNGLLDIPAYLLTFILIERWSRK 387
           R++TIM+  L   I V YFGL L   NL  +IY++      +++PAY+L ++L++   R+
Sbjct: 341 RVITIMSIILWLTISVGYFGLSLDTPNLHGDIYVNCFLLAAVEVPAYVLAWLLLQYLPRR 400

Query: 388 SSILTFCILSGTCSAICVAIGDEQEVLQIGLELASFFSACVAFNVLLVFGTELFTTCVRN 447
            SI     L G+       +  E   L   L +   F    A++++ V+  EL+ T VRN
Sbjct: 401 YSISAALFLGGSVLLFMQLVPSELFYLSTALVMVGKFGITSAYSMVYVYTAELYPTVVRN 460

Query: 448 STTSLVRQAVNLGAAFSPVLISAGRQNEFLSFGVFGLVVFCFGFFVVFLPETIGVTLCDT 507
               +   A  LG+  SP  +  G  + FL + + G +        +F PE+ GV L DT
Sbjct: 461 MGVGVSSTASRLGSILSPYFVYLGAYDRFLPYILMGSLTILTAILTLFFPESFGVPLPDT 520

Query: 508 LDQ 510
           +DQ
Sbjct: 521 IDQ 523

Sodium-ion dependent, high affinity carnitine transporter. Involved in the active cellular uptake of carnitine. Transports one sodium ion with one molecule of carnitine. Also transports organic cations such as tetraethylammonium (TEA) without the involvement of sodium. Also relative uptake activity ratio of carnitine to TEA is 11.3.

Mus musculus (taxid: 10090)

>sp|O70594|S22A5_RAT Solute carrier family 22 member 5 OS=Rattus norvegicus GN=Slc22a5 PE=1 SV=1

 Score =  154 bits (390), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 115/420 (27%), Positives = 199/420 (47%), Gaps = 16/420 (3%)

Query: 95  AWDRPSD---TTIISDWSLECAGSSILSGLPSSCFFIGCLLGGLALSTLGDSSSLGRKKL 151
            W+   D   +TI+++W L C      + L +S FF+G L+G      L D    GRK +
Sbjct: 116 GWEYNKDVFLSTIVTEWDLVCK-DDWKAPLTTSLFFVGVLMGSFISGQLSDR--FGRKNV 172

Query: 152 LFLSCFAMSITALATIFANNIWIYSTIRFVAGFFRAPIMTSVIVLLSEMVSKRWRGQVVI 211
           LFL+    +  +   +F+ N  +++ +  + G  +     +  VL +E++SK  R     
Sbjct: 173 LFLTMGMQTGFSFLQLFSVNFEMFTVLFVLVGMGQISNYVAAFVLGTEILSKSIRIIFAT 232

Query: 212 IGF-TFFSFGLVSLPAVAYLSRGSSWKMLYVWTSIPSIVCCIIIYPFISESPRWLFIHGH 270
           +G   F++FG + LP  AY  R   W+ML +  ++P ++C  + + FI ESPRWL   G 
Sbjct: 233 LGVCIFYAFGFMVLPLFAYFIR--DWRMLLLALTVPGVLCGALWW-FIPESPRWLISQGR 289

Query: 271 EAEAMAVLKRLASRSNYQSDYGLESCCLSNMPPKAKNVIPKLDLYSSLKDLFNRKWALRR 330
             EA  ++++ A++ N     G+ +      P + +++  K      + DL   +     
Sbjct: 290 VKEAEVIIRK-AAKFN-----GIVAPSTIFDPSELQDLNSKKPQSHHIYDLVRTRNIRII 343

Query: 331 LLTIMALAFGIGVVYFGLLLGVGNLSFNIYLSLAFNGLLDIPAYLLTFILIERWSRKSSI 390
            +  + L   I V YFGL L   NL  +IY++      +++PAY+L ++L++   R+ SI
Sbjct: 344 TIMSIILWLTISVGYFGLSLDTPNLHGDIYVNCFLLAAVEVPAYVLAWLLLQHLPRRYSI 403

Query: 391 LTFCILSGTCSAICVAIGDEQEVLQIGLELASFFSACVAFNVLLVFGTELFTTCVRNSTT 450
                L G+       +  E   L   L +   F    A++++ V+  EL+ T VRN   
Sbjct: 404 SAALFLGGSVLLFIQLVPSELFYLSTALVMVGKFGITSAYSMVYVYTAELYPTVVRNMGV 463

Query: 451 SLVRQAVNLGAAFSPVLISAGRQNEFLSFGVFGLVVFCFGFFVVFLPETIGVTLCDTLDQ 510
            +   A  LG+  SP  +  G  + FL + + G +        +F PE+ G  L DT+DQ
Sbjct: 464 GVSSTASRLGSILSPYFVYLGAYDRFLPYILMGSLTILTAILTLFFPESFGAPLPDTIDQ 523

Sodium-ion dependent, high affinity carnitine transporter. Involved in the active cellular uptake of carnitine. Transports one sodium ion with one molecule of carnitine. Also transports organic cations such as tetraethylammonium (TEA) without the involvement of sodium. Also relative uptake activity ratio of carnitine to TEA is 11.3.

Rattus norvegicus (taxid: 10116)

>sp|Q9WTN6|S22AL_MOUSE Solute carrier family 22 member 21 OS=Mus musculus GN=Slc22a21 PE=2 SV=1

 Score =  153 bits (386), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 119/427 (27%), Positives = 204/427 (47%), Gaps = 17/427 (3%)

Query: 95  AWDRPSD---TTIISDWSLECAGSSILSGLPSSCFFIGCLLGGLALSTLGDSSSLGRKKL 151
            W+   D   +TI+++W L C      + L +S F++G LLG      L D    GRK +
Sbjct: 116 GWEYDKDIFLSTIVTEWDLVCK-DDWKAPLTTSFFYVGVLLGSFISGQLSDR--FGRKNI 172

Query: 152 LFLSCFAMSITALATIFANNIWIYSTIRFVAGFFRAPIMTSVIVLLSEMVSKRWRGQVVI 211
           LFL+    +  +   +F+ N  +++ +  + G        +  VL +EM+SK  R     
Sbjct: 173 LFLTMAMHTGFSFIQVFSVNFEMFTLLYTLVGMGHISNYVAAFVLGTEMLSKSVRIIFAT 232

Query: 212 IGF-TFFSFGLVSLPAVAYLSRGSSWKMLYVWTSIPSIVCCIIIYPFISESPRWLFIHGH 270
           +G   FF+FG + LP  AY  R   W+ L +  ++P ++C  + + FI ESPRWL   G 
Sbjct: 233 LGVCIFFAFGFMVLPLFAYFIR--EWRRLLLAITLPGVLCGALWW-FIPESPRWLISQGR 289

Query: 271 EAEAMAVLKRLASRSNYQSDYGLESCCLSNMPPKAKNVIPKLDLYSSLKDLFNRKWALRR 330
             EA  ++++ A  +   +   +     +N   K ++   K      + DL        R
Sbjct: 290 IKEAEVIIRKAAKINGIVAPSTIFDPSETN---KLQDDSSKKPQSHHIYDLVRTPNI--R 344

Query: 331 LLTIMA--LAFGIGVVYFGLLLGVGNLSFNIYLSLAFNGLLDIPAYLLTFILIERWSRKS 388
           +LTIM+  L   I V YFGL L   NL+ NIY++      +++PAY+L ++L++  SR+ 
Sbjct: 345 ILTIMSIILWLTISVGYFGLSLDTPNLNGNIYVNCFLLAAVEVPAYVLAWLLLQHVSRRY 404

Query: 389 SILTFCILSGTCSAICVAIGDEQEVLQIGLELASFFSACVAFNVLLVFGTELFTTCVRNS 448
           S+     L G+   +   +  +   L   L +   F    A++++ V+  EL+ T VRN 
Sbjct: 405 SMAGSLFLGGSVLLLVQLVPSDLHYLSTTLVMVGKFGITSAYSMVYVYTAELYPTVVRNM 464

Query: 449 TTSLVRQAVNLGAAFSPVLISAGRQNEFLSFGVFGLVVFCFGFFVVFLPETIGVTLCDTL 508
              +   A  LG+  SP  +  G  +  L + + G +        +F PE+ GV+L +T+
Sbjct: 465 GVGVSSTASRLGSILSPYFVYLGAYDRRLPYILMGSLTILTAIITLFFPESSGVSLPETI 524

Query: 509 DQQEYFK 515
           D+ +  K
Sbjct: 525 DEMQKVK 531

Sodium-ion independent, medium affinity carnitine transporter. Also transports organic cations such as tetraethylammonium (TEA) without the involvement of sodium. Relative uptake activity ratio of carnitine to TEA is 746.

Mus musculus (taxid: 10090)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	521
224109096	502	predicted protein [Populus trichocarpa]	0.904	0.938	0.524	1e-147
224137726	506	predicted protein [Populus trichocarpa]	0.946	0.974	0.514	1e-143
225462303	526	PREDICTED: solute carrier family 22 memb	0.928	0.920	0.508	1e-142
359494670	527	PREDICTED: solute carrier family 22 memb	0.921	0.910	0.507	1e-140
224109092	517	predicted protein [Populus trichocarpa]	0.957	0.965	0.500	1e-140
15219351	527	organic cation/carnitine transporter 2 [	0.961	0.950	0.485	1e-140
297842719	526	hypothetical protein ARALYDRAFT_895842 [	0.961	0.952	0.482	1e-140
225462305	520	PREDICTED: solute carrier family 22 memb	0.921	0.923	0.505	1e-140
357470193	513	Solute carrier family 22 member [Medicag	0.928	0.943	0.520	1e-139
357515105	526	Solute carrier family 22 member [Medicag	0.969	0.960	0.472	1e-137

>gi|224109096|ref|XP_002315082.1| predicted protein [Populus trichocarpa] gi|222864122|gb|EEF01253.1| predicted protein [Populus trichocarpa]

 Score =  528 bits (1361), Expect = e-147,   Method: Compositional matrix adjust.
 Identities = 260/496 (52%), Positives = 354/496 (71%), Gaps = 25/496 (5%)

Query: 25  SLDEMIEQNLANLGLPQFIQVILISLLLIFESQQTFISVYTDEEPTWHCINNTTTCSSSS 84
           SLDE IE+ +   GL Q +Q IL+S   +F++QQTFISV+TD EP WHC +++  C+S S
Sbjct: 23  SLDETIERCIGEFGLAQLLQAILVSFAWVFDAQQTFISVFTDAEPKWHCTSDS--CTSVS 80

Query: 85  DICTLSKSAWAWDRPSDTTIISDWSLECAGSSILSGLPSSCFFIGCLLGGLALSTLGDSS 144
           DIC L +++WAWD P DT+IIS+W LECA SSI+ GLP+S FF+GCL+GGL L+TL DS 
Sbjct: 81  DICHLPQNSWAWDSPKDTSIISEWGLECA-SSIIKGLPASSFFMGCLIGGLMLATLADSL 139

Query: 145 SLGRKKLLFLSCFAMSITALATIFANNIWIYSTIRFVAGFFRAPIMTSVIVLLSEMVSKR 204
            LGRK LLFLSC  MS + L T+F+NNIWIYS ++FV G  RA I T  +VL +E+V KR
Sbjct: 140 -LGRKNLLFLSCLMMSFSGLFTVFSNNIWIYSALKFVNGVGRATIGTCALVLSTELVGKR 198

Query: 205 WRGQVVIIGFTFFSFGLVSLPAVAYLSRGSSWKMLYVWTSIPSIVCCIIIYPFISESPRW 264
           WR QV +IGF  F+ G ++LPA AY++RGSSW+ LY+WTS+P+I   I+++  + ESPRW
Sbjct: 199 WRSQVGVIGFFCFTLGFLTLPAFAYMNRGSSWRTLYLWTSVPTIFYSILVHFLVRESPRW 258

Query: 265 LFIHGHEAEAMAVLKRLASRSNY-------QSDYGLESCCLSNMPPKAKNVIPKLDLYSS 317
           LF+ G + EA+ +LK +A+  +          ++G ES                +D YS+
Sbjct: 259 LFVRGRKEEAVTILKSIATAGSSGILMSFSNLEFGKESW--------------NVDTYSA 304

Query: 318 LKDLFNRKWALRRLLTIMALAFGIGVVYFGLLLGVGNLSFNIYLSLAFNGLLDIPAYLLT 377
           +K L  +KWA RRLLT+MA+ FGIG+VY+G+ LG+GNLSFN+YLS+ FN L ++PA L+T
Sbjct: 305 IKILLKKKWACRRLLTVMAVVFGIGMVYYGMPLGLGNLSFNLYLSVTFNALSELPASLVT 364

Query: 378 FILIERWSRKSSILTFCILSGTCSAICVAIGDEQEVLQIGLELASFFSACVAFNVLLVFG 437
           F L+++ +RK S+L F  LSG CS + V +G+    LQ+GLEL SFF AC AFN+ L+  
Sbjct: 365 FFLVDKLNRKDSLLVFTTLSGVCSILSVVMGETSANLQMGLELVSFFCACTAFNISLIHT 424

Query: 438 TELFTTCVRNSTTSLVRQAVNLGAAFSPVLISAGRQNEFLSFGVFGLVVFCFGFFVVFLP 497
            ELF TCVRNS  S+ RQ++  G  FSPVL++ G +N FLS+G+FG+V+   G FV+FLP
Sbjct: 425 LELFPTCVRNSAISMARQSLVFGGMFSPVLVAVGSKNRFLSYGIFGMVIGICGLFVIFLP 484

Query: 498 ETIGVTLCDTLDQQEY 513
           ET G T+CDT+D++EY
Sbjct: 485 ETRGRTICDTMDEEEY 500

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224137726|ref|XP_002322629.1| predicted protein [Populus trichocarpa] gi|222867259|gb|EEF04390.1| predicted protein [Populus trichocarpa]

 Score =  514 bits (1324), Expect = e-143,   Method: Compositional matrix adjust.
 Identities = 263/511 (51%), Positives = 352/511 (68%), Gaps = 18/511 (3%)

Query: 5   ATPLIPVYQLGLDDQIS---PVVSLDEMIEQNLANLGLPQFIQVILISLLLIFESQQTFI 61
           ++PL+P + L   +  +   P  SLD ++E+ + + G  Q +Q  L+ L   F++QQTFI
Sbjct: 4   SSPLLPPFLLAEPENSAVDEPQASLDSVVERVIGDFGWTQLVQSTLVLLSRFFDAQQTFI 63

Query: 62  SVYTDEEPTWHCINNTTTCSSSSDICTLSKSAWAWDRPSDTTIISDWSLECAGSSILSGL 121
           SVY D EP WHCINN   C+SS++IC LSKS+WAW+  +  TIISDW LECA SS + GL
Sbjct: 64  SVYADSEPAWHCINNGM-CNSSANICDLSKSSWAWNGHTYKTIISDWDLECA-SSFIKGL 121

Query: 122 PSSCFFIGCLLGGLALSTLGDSSSLGRKKLLFLSCFAMSITALATIFANNIWIYSTIRFV 181
           P+S FF+GCLLGG  L TL D+S LGRK LL LSC  MSI +L TIF+ N+WIYS  RF+
Sbjct: 122 PASSFFLGCLLGGFVLGTLADTS-LGRKNLLTLSCLIMSIASLMTIFSTNVWIYSAFRFL 180

Query: 182 AGFFRAPIMTSVIVLLSEMVSKRWRGQVVIIGFTFFSFGLVSLPAVAYLSRGSSWKMLYV 241
           +GF RA I  + +VL +E V  +WRGQ+  I    F+ GL+SLP +AY++R  SW+ +YV
Sbjct: 181 SGFGRAAIGATALVLATEKVGSKWRGQMGTIAGVSFALGLLSLPGIAYINRNFSWRTIYV 240

Query: 242 WTSIPSIVCCIIIYPFISESPRWLFIHGHEAEAMAVLKRLASRSNYQSDYGLESCCLSNM 301
           WTS PSI+ C++++  + ESPRWLF+ G +  AMA+LKRL   S         + CL  +
Sbjct: 241 WTSTPSILYCVLVHLLVLESPRWLFLQGRKEAAMAILKRLGPTS--------LNLCLPYI 292

Query: 302 PPKAKNVIPKLDLYSSLKDLFNRKWALRRLLTIMALAFGIGVVYFGLLLGVGNLSFNIYL 361
             + +   PK +LYS +K L  RKWAL+RLL +M   FGIG+VY+ + L VGNL FNIYL
Sbjct: 293 SLEKEA--PKTNLYSPIKILLVRKWALQRLLIVMLTGFGIGIVYYSMPLAVGNLGFNIYL 350

Query: 362 SLAFNGLLDIPAYLLTFILIERWSRKSSILTFCILSGTCSAICVAIGDEQEVLQIGLELA 421
           S+AFN L +IP+Y++   ++ +WSRK S+L F  L G CS +C+   + +EV+ IGLEL 
Sbjct: 351 SVAFNALAEIPSYIIFSFIVSKWSRKGSLLAFTTLGGICSIMCIM--NWKEVVLIGLELV 408

Query: 422 SFFSACVAFNVLLVFGTELFTTCVRNSTTSLVRQAVNLGAAFSPVLISAGRQNEFLSFGV 481
           S+FSAC AF +L+++  ELF TCVRN  +S+VRQA   GA FSP+LISAGR N+ LS+GV
Sbjct: 409 SYFSACTAFIMLMIYTLELFPTCVRNGASSMVRQAPVFGAVFSPILISAGRSNKVLSYGV 468

Query: 482 FGLVVFCFGFFVVFLPETIGVTLCDTLDQQE 512
           FGLV+ C   FV  LPET GV L DT+D+QE
Sbjct: 469 FGLVILCSSVFVFCLPETRGVALSDTMDEQE 499

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225462303|ref|XP_002265206.1| PREDICTED: solute carrier family 22 member 21-like [Vitis vinifera]

 Score =  510 bits (1313), Expect = e-142,   Method: Compositional matrix adjust.
 Identities = 249/490 (50%), Positives = 349/490 (71%), Gaps = 6/490 (1%)

Query: 25  SLDEMIEQNLANLGLPQFIQVILISLLLIFESQQTFISVYTDEEPTWHCIN-NTTTCSSS 83
           SLDE IEQ++      Q +  IL+SL  +F+ QQTFIS++TD EPTWHC + +T  C+S 
Sbjct: 36  SLDEFIEQSIGGFAWAQLLHAILVSLAWLFDGQQTFISIFTDAEPTWHCNHLSTEDCNSG 95

Query: 84  SDICTLSKSAWAWDRPSDTTIISDWSLECAGSSILSGLPSSCFFIGCLLGGLALSTLGDS 143
           S+IC L K+AW WD+P+ T  IS+WSLEC  +SI+ GLP++ FF+GCLLGG  L+ + DS
Sbjct: 96  SNICLLPKTAWEWDKPAYTFFISEWSLECV-NSIIKGLPATSFFMGCLLGGFLLAPVADS 154

Query: 144 SSLGRKKLLFLSCFAMSITALATIFANNIWIYSTIRFVAGFFRAPIMTSVIVLLSEMVSK 203
           S  GRK +LFLSC  MS+ AL T+F+ NIW+YS +RF++GF RA I  S +VL +E V  
Sbjct: 155 S-FGRKNMLFLSCLTMSVAALLTVFSTNIWMYSALRFISGFGRASIGASALVLSTETVGN 213

Query: 204 RWRGQVVIIGFTFFSFGLVSLPAVAYLSRGSSWKMLYVWTSIPSIVCCIIIYPFISESPR 263
            WRGQV  IGF   + G +SLPA+AY++R SSW++LYVWTSIP+I  C++I   + ESPR
Sbjct: 214 AWRGQVGTIGFLCCTLGFLSLPAMAYMNRSSSWRLLYVWTSIPAIFYCLLIRFLVCESPR 273

Query: 264 WLFIHGHEAEAMAVLKRLASRSNYQSDYGLESCCLSNMPPKAKNVIPKLDLYSSLKDLFN 323
           WLF+ G + EA+A L++LA   N  S   L+  CLS    K + +  K++L+ S+K L  
Sbjct: 274 WLFMQGRKEEALATLEKLAPMENNTSLKSLD-LCLSGALLKQEKM--KMNLHLSIKMLLE 330

Query: 324 RKWALRRLLTIMALAFGIGVVYFGLLLGVGNLSFNIYLSLAFNGLLDIPAYLLTFILIER 383
           ++WA RRLL +M +AFGIG++Y+G+ LGVGNL++N+YLS+  N L ++P+ L+T   I +
Sbjct: 331 KRWASRRLLAVMVIAFGIGIMYYGMPLGVGNLAYNLYLSVTLNVLAEMPSSLITMFYIGK 390

Query: 384 WSRKSSILTFCILSGTCSAICVAIGDEQEVLQIGLELASFFSACVAFNVLLVFGTELFTT 443
           WSR+SS+L    +SG  S +CV +G   + LQ+GLEL SFF AC  F+VL+++  ELF T
Sbjct: 391 WSRRSSVLALTTISGVSSIMCVVVGHGMKELQVGLELISFFCACTVFSVLMIYTLELFPT 450

Query: 444 CVRNSTTSLVRQAVNLGAAFSPVLISAGRQNEFLSFGVFGLVVFCFGFFVVFLPETIGVT 503
           CVR+   ++VRQA+      S +LI+AG+ N FLS+GVFGL++ C G FVV LPET G++
Sbjct: 451 CVRSLAVAMVRQALMSSGTVSTILIAAGKTNAFLSYGVFGLLILCCGLFVVCLPETKGLS 510

Query: 504 LCDTLDQQEY 513
           LCDT+++QE+
Sbjct: 511 LCDTMEEQEH 520

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359494670|ref|XP_002265245.2| PREDICTED: solute carrier family 22 member 3-like [Vitis vinifera]

 Score =  506 bits (1303), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 248/489 (50%), Positives = 342/489 (69%), Gaps = 9/489 (1%)

Query: 25  SLDEMIEQNLANLGLPQFIQVILISLLLIFESQQTFISVYTDEEPTWHCIN-NTTTCSSS 83
           SLDE  E+ + + G  Q +Q  L+S   +F++QQTFISV+TD EP WHC    T  C+S 
Sbjct: 27  SLDETFERYIGDFGWAQLLQAFLVSFAWVFDAQQTFISVFTDAEPPWHCTELGTELCTSV 86

Query: 84  SDICTLSKSAWAWDRPSDTTIISDWSLECAGSSILSGLPSSCFFIGCLLGGLALSTLGDS 143
           S+IC L K +WAWDR +DT+I+S+W+L CAGS I+  LP+S FF GC++GGL L+TL DS
Sbjct: 87  SNICQLPKGSWAWDRAADTSIVSEWTLVCAGS-IIKSLPASSFFTGCMVGGLVLATLADS 145

Query: 144 SSLGRKKLLFLSCFAMSITALATIFANNIWIYSTIRFVAGFFRAPIMTSVIVLLSEMVSK 203
           S  GRK +LF SC  MS T + TIF+ N+WIYS  RF++GF RA I T  IVL +E+V K
Sbjct: 146 S-FGRKNMLFFSCLLMSATGILTIFSPNVWIYSGFRFLSGFGRATIGTCAIVLSTELVGK 204

Query: 204 RWRGQVVIIGFTFFSFGLVSLPAVAYLSRGSSWKMLYVWTSIPSIVCCIIIYPFISESPR 263
           RWR QV + GF  F+ G +SLPA+AYLSR SSW+ LY+WTS+P+ + C++++ F+ ESPR
Sbjct: 205 RWRSQVGVCGFFLFTLGFLSLPAIAYLSRSSSWRYLYLWTSVPASLYCVLVHFFVRESPR 264

Query: 264 WLFIHGHEAEAMAVLKRLASRSNYQSDYGLESCCLSNMPPKAKNVIPKLDLYSSLKDLFN 323
           WL + G + EA+A LK + + +N  S + L     S +P + +     L LYS +  L  
Sbjct: 265 WLLVRGRKEEAVATLKSIGAVNN--SSFTLS---FSGLPFEEEETT-NLHLYSVISILLE 318

Query: 324 RKWALRRLLTIMALAFGIGVVYFGLLLGVGNLSFNIYLSLAFNGLLDIPAYLLTFILIER 383
           ++WALRRL  +M + FG+G+VY+G+ L +GNL FN+Y ++ FN L ++PA L+ F  IER
Sbjct: 319 KRWALRRLSAVMTVGFGVGMVYYGMPLALGNLPFNLYWNVTFNALSELPASLIAFFFIER 378

Query: 384 WSRKSSILTFCILSGTCSAICVAIGDEQEVLQIGLELASFFSACVAFNVLLVFGTELFTT 443
            +RKSS+L F + SG CS +CV +G+E   L+IGLEL SFFS C AF++LL++  ELF T
Sbjct: 379 LNRKSSVLVFTMTSGVCSIMCVVMGEEWASLKIGLELVSFFSTCTAFDILLIYTIELFPT 438

Query: 444 CVRNSTTSLVRQAVNLGAAFSPVLISAGRQNEFLSFGVFGLVVFCFGFFVVFLPETIGVT 503
           CVRNS  ++VRQA+  G  F PV++  GR N +LS+GVFG+V+   G FV  LPET G T
Sbjct: 439 CVRNSAMAMVRQALVFGGVFCPVIVEIGRGNGYLSYGVFGVVIISCGLFVGCLPETKGGT 498

Query: 504 LCDTLDQQE 512
           LCDT++++E
Sbjct: 499 LCDTMEEEE 507

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224109092|ref|XP_002315081.1| predicted protein [Populus trichocarpa] gi|222864121|gb|EEF01252.1| predicted protein [Populus trichocarpa]

 Score =  506 bits (1303), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 258/515 (50%), Positives = 353/515 (68%), Gaps = 16/515 (3%)

Query: 4   SATPLIPVYQLG-----LDDQISPVVSLDEMIEQNLANLGLPQFIQVILISLLLIFESQQ 58
           ++ PLI   QL      LD Q     SLD+ IE+ +   G  Q++QVIL+SL  +F+ QQ
Sbjct: 3   TSAPLISKSQLSSGIETLDHQEQH--SLDDTIEKYIEGFGPAQYLQVILVSLAFLFDGQQ 60

Query: 59  TFISVYTDEEPTWHCIN-NTTTCSSSSDICTLSKSAWAWDRPSDTTIISDWSLECAGSSI 117
           TFIS ++D  P+WHC + +  TC SSS+ C LS + WAWD P+ ++I+SDW+LEC GSS+
Sbjct: 61  TFISDFSDAVPSWHCTDFSNQTCYSSSNFCNLSNTEWAWDEPASSSIVSDWALEC-GSSV 119

Query: 118 LSGLPSSCFFIGCLLGGLALSTLGDSSSLGRKKLLFLSCFAMSITALATIFANNIWIYST 177
           + GLP+S +F+G L+GG  L+TL DS  LGRKKLLFL+C  MS  AL T F+ N+WIYS 
Sbjct: 120 IVGLPASSYFVGSLIGGFTLATLADSW-LGRKKLLFLTCMGMSTMALITAFSTNVWIYSG 178

Query: 178 IRFVAGFFRAPIMTSVIVLLSEMVSKRWRGQVVIIGFTFFSFGLVSLPAVAYLSRGSSWK 237
           +RFV+G FRA I T V+V+ +EM  K+  G V ++GF FF+ G +SLP +AYL+RGS W+
Sbjct: 179 LRFVSGLFRASIGTCVVVMSTEMAGKKSGGFVRVVGFLFFALGALSLPLIAYLNRGSPWR 238

Query: 238 MLYVWTSIPSIVCCIIIYPFISESPRWLFIHGHEAEAMAVLKRLASRSNYQSDYGLESCC 297
            LY++TSIP+IV CII Y F+SESPRWL + G EAEA+A+L ++    N      + S  
Sbjct: 239 YLYIYTSIPAIVYCIIAYFFVSESPRWLCMRGREAEAVAILNKMVPTKN------ISSSI 292

Query: 298 LSNMPPKAKNVIPKLDLYSSLKDLFNRKWALRRLLTIMALAFGIGVVYFGLLLGVGNLSF 357
           L +      +    LD+YSS+K L  R+WAL+RLL  M L FG+G+VY+G+ LGVG+L F
Sbjct: 293 LKSAYKPLDHEQSNLDIYSSMKSLLERRWALKRLLAAMTLGFGVGMVYYGMFLGVGSLGF 352

Query: 358 NIYLSLAFNGLLDIPAYLLTFILIERWSRKSSILTFCILSGTCSAICVAIGDEQEVLQIG 417
           NIYLS+     L IP+ LL   +IER++R+SS++ F I SG CS +C  IG+E + +QI 
Sbjct: 353 NIYLSVTLTASLTIPSILLLPYVIERFNRRSSVVAFGIASGVCSIVCAIIGEELKTVQII 412

Query: 418 LELASFFSACVAFNVLLVFGTELFTTCVRNSTTSLVRQAVNLGAAFSPVLISAGRQNEFL 477
           + LAS F +C A NVL ++ TELF TCVR S TS+ RQA+N G  F P+L+SA R+N  +
Sbjct: 413 MSLASAFCSCAALNVLQIYTTELFPTCVRISATSMFRQAINFGPIFVPLLVSAARRNNSV 472

Query: 478 SFGVFGLVVFCFGFFVVFLPETIGVTLCDTLDQQE 512
            +GVFG V     FFV+FLPET G++L + +D+QE
Sbjct: 473 VYGVFGSVEISCIFFVIFLPETRGLSLSNAMDEQE 507

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15219351|ref|NP_178054.1| organic cation/carnitine transporter 2 [Arabidopsis thaliana] gi|75219810|sp|O64515.1|OCT2_ARATH RecName: Full=Organic cation/carnitine transporter 2; Short=AtOCT2 gi|3152576|gb|AAC17057.1| Similar to liver-specific transport protein gb|L27651 from Rattus norviegicus [Arabidopsis thaliana] gi|332198113|gb|AEE36234.1| organic cation/carnitine transporter 2 [Arabidopsis thaliana]

 Score =  504 bits (1299), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 248/511 (48%), Positives = 354/511 (69%), Gaps = 10/511 (1%)

Query: 10  PVYQLGLDDQISPVVSLDEMIEQNLANLGLPQFIQVILISLLLIFESQQTFISVYTDEEP 69
           P   L  D   S   SLD+ IE  + + G  QF+Q  L+S   +F++QQTFISV+TD EP
Sbjct: 4   PTQPLLTDSNSSSPRSLDDTIESYIGSFGWAQFLQAALVSFSGVFDAQQTFISVFTDSEP 63

Query: 70  TWHCINNTTTCSSS-SDICTLSKSAWAWDRPSDTTIISDWSLECAGSSILSGLPSSCFFI 128
           TWHC ++ + C  S S+IC L K+AW+WD     ++IS+W L+CAGS  + GLP S FF+
Sbjct: 64  TWHCTDSNSICHESISNICILPKTAWSWDYSPHVSVISEWGLQCAGS-FVKGLPESSFFV 122

Query: 129 GCLLGGLALSTLGDSSSLGRKKLLFLSCFAMSITALATIFANNIWIYSTIRFVAGFFRAP 188
           GCL+GGL LSTL DSS LGRK +LFLSC  M+I+ + T+F+ NIW+Y+ +RFV GF RA 
Sbjct: 123 GCLIGGLVLSTLADSS-LGRKNMLFLSCLVMAISTMLTVFSPNIWVYAVLRFVNGFGRAT 181

Query: 189 IMTSVIVLLSEMVSKRWRGQVVIIGFTFFSFGLVSLPAVAYLSRGSSWKMLYVWTSIPSI 248
           I T  +VL +E+V K+WRG+V I+ F  F  G +SLP +AY++RGSSW++LY WTSIP+I
Sbjct: 182 IGTCALVLSTELVGKKWRGRVGIMSFFGFMLGFLSLPLMAYMNRGSSWRILYAWTSIPTI 241

Query: 249 VCCIIIYPFISESPRWLFIHGHEAEAMAVLKRLAS-RSNYQSDYGLESCCLSNMPPKAKN 307
           + C+++  F+ ESPRWLF+ G   EA+++LKR+AS  S   S  G  S   S++P +   
Sbjct: 242 IYCVLVRFFVCESPRWLFVRGRREEAISILKRVASIPSTDVSSGGAISMSFSSLPFEEDE 301

Query: 308 VIP--KLDLYSSLKDLFNRKWALRRLLTIMALAFGIGVVYFGLLLGVGNLSFNIYLSLAF 365
             P   +++++++K L  ++WAL+RL  +MA+AFGIG+VY+G+ L + NL FNIYLS AF
Sbjct: 302 EKPSTNVNIFTTMKVLVEKRWALKRLSAVMAIAFGIGLVYYGMPLALSNLDFNIYLSAAF 361

Query: 366 NGLLDIPAYLLTFILIERWSRKSSILTFCILSGTCSAICVAIGD----EQEVLQIGLELA 421
           N L+D+PA L+T  L+++ SR+++++ F  L G  S +  A+ +        LQ+ LEL 
Sbjct: 362 NALMDLPANLITLFLVDKLSRRNALIGFTALGGVSSVLIFALHNMRIGNHGALQLALELI 421

Query: 422 SFFSACVAFNVLLVFGTELFTTCVRNSTTSLVRQAVNLGAAFSPVLISAGRQNEFLSFGV 481
           S+FSAC AFN+ +++  ELF TCVRNS  ++ RQA+ LG  FSP++++AGR+N F SFG+
Sbjct: 422 SYFSACSAFNMEMIYTIELFPTCVRNSAIAMARQALVLGGVFSPIMVAAGRKNAFWSFGL 481

Query: 482 FGLVVFCFGFFVVFLPETIGVTLCDTLDQQE 512
           FGL +   G F V LPET G  LCDT+D++E
Sbjct: 482 FGLAIGLLGLFAVGLPETRGSDLCDTMDEEE 512

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297842719|ref|XP_002889241.1| hypothetical protein ARALYDRAFT_895842 [Arabidopsis lyrata subsp. lyrata] gi|297335082|gb|EFH65500.1| hypothetical protein ARALYDRAFT_895842 [Arabidopsis lyrata subsp. lyrata]

 Score =  504 bits (1297), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 246/510 (48%), Positives = 356/510 (69%), Gaps = 9/510 (1%)

Query: 10  PVYQLGLDDQISPVVSLDEMIEQNLANLGLPQFIQVILISLLLIFESQQTFISVYTDEEP 69
           P   L  D   S   S D+ IE  + + G  QF+Q  L+S   +F++QQTFISV+TD EP
Sbjct: 4   PTQPLLTDSNSSSPRSFDDTIESYIGSFGWAQFLQAALVSFSGVFDAQQTFISVFTDSEP 63

Query: 70  TWHCINNTTTCSSS-SDICTLSKSAWAWDRPSDTTIISDWSLECAGSSILSGLPSSCFFI 128
           TWHC ++ + C  S S+IC L K+AW+WD     ++IS+W L+CAGS  + GLP S FF+
Sbjct: 64  TWHCTDSDSICHESISNICILPKTAWSWDYSPHVSVISEWGLQCAGS-FVKGLPESSFFV 122

Query: 129 GCLLGGLALSTLGDSSSLGRKKLLFLSCFAMSITALATIFANNIWIYSTIRFVAGFFRAP 188
           GCL+GGL LSTL DSS LGRK +LFLSC  M+I+ + T+F+ NIW+Y+ +RFV GF RA 
Sbjct: 123 GCLIGGLVLSTLADSS-LGRKNMLFLSCLVMAISTMLTVFSPNIWVYAVLRFVNGFGRAT 181

Query: 189 IMTSVIVLLSEMVSKRWRGQVVIIGFTFFSFGLVSLPAVAYLSRGSSWKMLYVWTSIPSI 248
           I T  +VL +E+V K+WRG+V I+ F  F  G +SLP +AY++RGSSW++LYVWTSIP+I
Sbjct: 182 IGTCALVLSTELVGKKWRGRVGIMSFFGFMLGFLSLPLMAYINRGSSWRILYVWTSIPTI 241

Query: 249 VCCIIIYPFISESPRWLFIHGHEAEAMAVLKRLASRSNYQSDYGLE-SCCLSNMPPKAKN 307
           + C+++  F+ ESPRWLF+ G + EA+++LKR+AS  +   + G   S   S++P + + 
Sbjct: 242 IYCVLVRFFVCESPRWLFVRGRKEEAISILKRVASIPSTDVNIGGAISMSFSSLPFEDEE 301

Query: 308 VIP-KLDLYSSLKDLFNRKWALRRLLTIMALAFGIGVVYFGLLLGVGNLSFNIYLSLAFN 366
             P  +++++++K L  ++WAL+RL  +MA+AFGIG+VY+G+ L + NL FNIYLS AFN
Sbjct: 302 EKPNNVNIFTTMKVLVEKRWALKRLSAVMAIAFGIGLVYYGMPLALSNLDFNIYLSAAFN 361

Query: 367 GLLDIPAYLLTFILIERWSRKSSILTFCILSGTCSAICVAIGD----EQEVLQIGLELAS 422
            L+D+PA L+T  L+++ SR+++++ F  L G  S +  A+ +        LQ+ LEL S
Sbjct: 362 ALMDLPANLITLFLVDKLSRRNALIGFTALGGVSSVLIFALQNMRIGNHGALQLALELIS 421

Query: 423 FFSACVAFNVLLVFGTELFTTCVRNSTTSLVRQAVNLGAAFSPVLISAGRQNEFLSFGVF 482
           +FSAC AFN+ +++  ELF TCVRNS  ++ RQA+ LG  FSP++++AGR+N F SFG+F
Sbjct: 422 YFSACSAFNMEMIYTIELFPTCVRNSAIAMARQALVLGGVFSPIMVAAGRKNAFWSFGLF 481

Query: 483 GLVVFCFGFFVVFLPETIGVTLCDTLDQQE 512
           GL +   G F V LPET G  LCDT+D++E
Sbjct: 482 GLAIALLGLFAVGLPETRGSDLCDTMDEEE 511

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225462305|ref|XP_002266025.1| PREDICTED: solute carrier family 22 member 3-like [Vitis vinifera]

 Score =  503 bits (1295), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 247/489 (50%), Positives = 343/489 (70%), Gaps = 9/489 (1%)

Query: 25  SLDEMIEQNLANLGLPQFIQVILISLLLIFESQQTFISVYTDEEPTWHCIN-NTTTCSSS 83
           SLDE  E+ + + G  Q +Q  L+S   +F++QQTFIS++TD EP WHC    T  C+S 
Sbjct: 27  SLDETFERYIGDFGWAQLLQAFLVSFAWVFDAQQTFISLFTDAEPPWHCTELGTELCTSV 86

Query: 84  SDICTLSKSAWAWDRPSDTTIISDWSLECAGSSILSGLPSSCFFIGCLLGGLALSTLGDS 143
           S+IC L K +WAWDR +DT+I+S+W+L CAGS I+  LP+S FF+GC++GGL L+TL DS
Sbjct: 87  SNICQLPKGSWAWDRAADTSIVSEWTLVCAGS-IIKSLPASSFFMGCMVGGLVLATLADS 145

Query: 144 SSLGRKKLLFLSCFAMSITALATIFANNIWIYSTIRFVAGFFRAPIMTSVIVLLSEMVSK 203
           S LGRK +LF SC  MS T + TIF+ N+WIYS  RF++GF RA I T  IVL +E+V K
Sbjct: 146 S-LGRKNMLFFSCLLMSATGILTIFSPNVWIYSGFRFLSGFGRATIGTCAIVLSTELVGK 204

Query: 204 RWRGQVVIIGFTFFSFGLVSLPAVAYLSRGSSWKMLYVWTSIPSIVCCIIIYPFISESPR 263
           RWR QV + GF  F+ G +SLPA+AYLSRGSSW+ LY+WTS+P++  C++++ F+ ESPR
Sbjct: 205 RWRSQVGVCGFFLFTLGFLSLPAIAYLSRGSSWRYLYLWTSVPALSYCVLVHFFVRESPR 264

Query: 264 WLFIHGHEAEAMAVLKRLASRSNYQSDYGLESCCLSNMPPKAKNVIPKLDLYSSLKDLFN 323
           WL + G + EA+A LK + + +N  S + L     S +P + +     L L S +  L  
Sbjct: 265 WLLVRGRKEEAVATLKSIGAVNN--SSFTLS---FSGLPFEDEETT-NLHLCSVISILLE 318

Query: 324 RKWALRRLLTIMALAFGIGVVYFGLLLGVGNLSFNIYLSLAFNGLLDIPAYLLTFILIER 383
           ++WALRRL  +M + FG+G+VY+G+ L +GNL FN+Y ++ FN L ++PA L+ F  IER
Sbjct: 319 KRWALRRLSAVMTVGFGVGMVYYGMPLALGNLPFNLYWNVTFNALSELPASLIAFFFIER 378

Query: 384 WSRKSSILTFCILSGTCSAICVAIGDEQEVLQIGLELASFFSACVAFNVLLVFGTELFTT 443
            +RKSS+L F + SG CS +CV +G+E   L+IGLEL SFFS C AF++LL++  ELF T
Sbjct: 379 LNRKSSVLVFTMTSGVCSIMCVVMGEEWASLKIGLELVSFFSTCTAFDILLIYTIELFPT 438

Query: 444 CVRNSTTSLVRQAVNLGAAFSPVLISAGRQNEFLSFGVFGLVVFCFGFFVVFLPETIGVT 503
           CVRNS  ++VRQA+  G  F PV++  G  N +LS+GVFG+V+   G FV  LPET G T
Sbjct: 439 CVRNSAMAMVRQALVFGGVFCPVIVEIGMGNGYLSYGVFGVVIISCGLFVGCLPETKGGT 498

Query: 504 LCDTLDQQE 512
           LCDT++++E
Sbjct: 499 LCDTMEEEE 507

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357470193|ref|XP_003605381.1| Solute carrier family 22 member [Medicago truncatula] gi|217074868|gb|ACJ85794.1| unknown [Medicago truncatula] gi|355506436|gb|AES87578.1| Solute carrier family 22 member [Medicago truncatula]

 Score =  501 bits (1289), Expect = e-139,   Method: Compositional matrix adjust.
 Identities = 258/496 (52%), Positives = 351/496 (70%), Gaps = 12/496 (2%)

Query: 17  DDQISPVVSLDEMIEQNLANLGLPQFIQVILISLLLIFESQQTFISVYTDEEPTWHCINN 76
           D+++SP  S DEMIE++L   G  +F+Q IL+S  + F++QQ+FI++YTD+ PTWHC  +
Sbjct: 23  DEKVSP--SSDEMIERSLGTFGWVEFVQCILVSFAMFFDAQQSFITIYTDDYPTWHC-TD 79

Query: 77  TTTCSSSSDICTLSKSAWAWDRPSDTTIISDWSLECAGSSILSGLPSSCFFIGCLLGGLA 136
           +TTC+S+S+IC + KS+W+WD P   TIIS WSLECA SS ++GLP S FFIGCL+G  A
Sbjct: 80  STTCNSNSNICKIPKSSWSWDGPVQKTIISQWSLECA-SSFITGLPQSSFFIGCLIGSFA 138

Query: 137 LSTLGDSSSLGRKKLLFLSCFAMSITALATIFANNIWIYSTIRFVAGFFRAPIMTSVIVL 196
           L+TL D+S LGRK +L +SC +MSIT++  +F+ N+WIYS  +F+ GF+R+ I T V+VL
Sbjct: 139 LATLADTS-LGRKNMLIISCLSMSITSIIIVFSTNVWIYSAFKFLIGFWRSSIGTCVLVL 197

Query: 197 LSEMVSKRWRGQVVIIGFTFFSFGLVSLPAVAYLSRGSSWKMLYVWTSIPSIVCCIIIYP 256
           L+E VS  WR  V I+ +  F+ G +SLP VAY+ R SSWK +Y+WTSIP+I+  II Y 
Sbjct: 198 LTEKVSTEWRFTVGIVEYFCFTLGYMSLPGVAYVFRFSSWKSVYIWTSIPAIIYTIIGYF 257

Query: 257 FISESPRWLFIHGHEAEAMAVLKRLASRSNYQSDYGLESCCLSNMPPKAKNVIPKLDLYS 316
           F++ESPRWL + G   EA+A+LK ++S  N      L +  L N PPK K  +    LYS
Sbjct: 258 FVTESPRWLLMQGRNKEAIAMLKGMSSEENAD----LTASLLLNAPPKQKTSV--FQLYS 311

Query: 317 SLKDLFNRKWALRRLLTIMALAFGIGVVYFGLLLGVGNLSFNIYLSLAFNGLLDIPAYLL 376
           S+  LF R WAL+R++ IM L  GIG+VYFG+ L VGNL F+IYL++ FN L++IP+ + 
Sbjct: 312 SITKLFERSWALKRMVAIMVLGMGIGMVYFGMPLAVGNLGFDIYLAVVFNALMEIPSCVA 371

Query: 377 TFILIERWSRKSSILTFCILSGTCSAICVAIGDEQEVLQIGLELASFFSACVAFNVLLVF 436
           T+ L  R  RK SIL F I SG C  +CV +G   + +++GL L SFFSA  A+NV L++
Sbjct: 372 TYFLENR-QRKPSILAFSIASGVCCVMCVVVGSGVQGIKVGLALTSFFSATTAYNVFLIY 430

Query: 437 GTELFTTCVRNSTTSLVRQAVNLGAAFSPVLISAGRQNEFLSFGVFGLVVFCFGFFVVFL 496
             ELF T VRN+TTSLVRQA+  G  FSP LISAGR+N+  S+GVFG+V+      ++ L
Sbjct: 431 IIELFPTSVRNTTTSLVRQAIVFGNIFSPFLISAGRKNDVFSYGVFGVVIMLSCVTLLAL 490

Query: 497 PETIGVTLCDTLDQQE 512
           PET G  LCDT+DQQE
Sbjct: 491 PETKGQALCDTMDQQE 506

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357515105|ref|XP_003627841.1| Solute carrier family 22 member [Medicago truncatula] gi|355521863|gb|AET02317.1| Solute carrier family 22 member [Medicago truncatula]

 Score =  494 bits (1273), Expect = e-137,   Method: Compositional matrix adjust.
 Identities = 242/512 (47%), Positives = 348/512 (67%), Gaps = 7/512 (1%)

Query: 1   MEHSATPLIPVYQLGLDDQISPVVSLDEMIEQNLANLGLPQFIQVILISLLLIFESQQTF 60
           ME S    +P     ++ +  P++S D +IE++L+N G   F+Q +L+++ + F++QQ+F
Sbjct: 1   MEGSVQINVPESHSNIEQEKKPILSWDVIIEKSLSNFGWMDFLQAVLVAVAMFFDAQQSF 60

Query: 61  ISVYTDEEPTWHCINNTTTCSSSSDICTLSKSAWAWDRPSDTTIISDWSLECAGSSILSG 120
           IS+YTD  P WHC N  + C+SSSDIC L +S+W+WD     TIIS W+LECA S+ ++G
Sbjct: 61  ISIYTDNYPKWHCTN--SICTSSSDICKLPRSSWSWDTHPSNTIISHWNLECA-STFITG 117

Query: 121 LPSSCFFIGCLLGGLALSTLGDSSSLGRKKLLFLSCFAMSITALATIFANNIWIYSTIRF 180
           LP S FFIGCLLG   L+ L DSS +GRK +L  SC +MSIT++  IF+ N+WIYS ++F
Sbjct: 118 LPQSSFFIGCLLGSFFLAALADSS-IGRKNMLIFSCVSMSITSMLIIFSTNVWIYSALKF 176

Query: 181 VAGFFRAPIMTSVIVLLSEMVSKRWRGQVVIIGFTFFSFGLVSLPAVAYLSRGSSWKMLY 240
           + GF+R+ I T V+VLL+E VS  WR +V I+ +  F+ G +SLP  AY++R SSWK LY
Sbjct: 177 LIGFWRSSIGTCVLVLLTEKVSAEWRFRVGIVEYFTFTMGYMSLPGFAYINRNSSWKSLY 236

Query: 241 VWTSIPSIVCCIIIYPFISESPRWLFIHGHEAEAMAVLKRLASRSNYQSDYGLESCCLSN 300
           +W+S+P+I   +I Y F++ESPRWL + G E E + +LKR++S  +   D    +  L  
Sbjct: 237 IWSSVPAICYSVIAYLFVTESPRWLVMQGREKEILKMLKRVSSEESADDDSVNLASNLPI 296

Query: 301 MPPKAKNVIPKLDLYSSLKDLFNRKWALRRLLTIMALAFGIGVVYFGLLLGVGNLSFNIY 360
           +PPK K  +    LYSS+ +LF+++WA+ R++ +M L  G+G+VYFG+ L VGNL FNIY
Sbjct: 297 LPPKEK--VSFFQLYSSIGELFHKRWAVIRMIAVMILGIGLGMVYFGMPLAVGNLGFNIY 354

Query: 361 LSLAFNGLLDIPAYLLTFILIERWSRKSSILTFCILSGTCSAICVAIGDEQEVLQIGLEL 420
           L++ F+  +++P+ + T+ L E   RK SIL F IL G C   C  + +     ++ L +
Sbjct: 355 LAVVFSASMELPSCVATYFL-ENLRRKPSILVFSILGGICCVTCAVLENRVPAAKVVLAM 413

Query: 421 ASFFSACVAFNVLLVFGTELFTTCVRNSTTSLVRQAVNLGAAFSPVLISAGRQNEFLSFG 480
            +FF AC A+NV L++  ELF TCVRN+TTSLVRQA+  G  F P LISAGR+N   S+G
Sbjct: 414 VAFFGACTAYNVFLIYIIELFPTCVRNTTTSLVRQAIVFGCIFCPFLISAGRKNNIYSYG 473

Query: 481 VFGLVVFCFGFFVVFLPETIGVTLCDTLDQQE 512
           VFG+V+    F + FLPETIG+ LCDT+DQQE
Sbjct: 474 VFGVVIMLSNFTLFFLPETIGIVLCDTMDQQE 505

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	521
TAIR|locus:2207360	527	OCT2 "AT1G79360" [Arabidopsis	0.961	0.950	0.438	3.1e-115
TAIR|locus:2032825	518	OCT3 "AT1G16390" [Arabidopsis	0.971	0.976	0.419	2.9e-110
TAIR|locus:2032790	521	OCT6 "AT1G16370" [Arabidopsis	0.919	0.919	0.394	8.4e-97
TAIR|locus:2206430	515	OCT5 "AT1G79410" [Arabidopsis	0.961	0.972	0.391	8.4e-97
TAIR|locus:2197244	539	OCT1 "AT1G73220" [Arabidopsis	0.909	0.879	0.342	1.4e-71
TAIR|locus:2083425	526	OCT4 "organic cation/carnitine	0.840	0.832	0.287	8.3e-51
UNIPROTKB|F1MII8	540	SLC22A8 "Uncharacterized prote	0.783	0.755	0.257	5.8e-40
MGI|MGI:1353479	553	Slc22a4 "solute carrier family	0.790	0.745	0.263	9.2e-36
UNIPROTKB|Q70BM6	543	SLC22A8 "Solute carrier family	0.779	0.747	0.259	1.6e-35
UNIPROTKB|C0MP43	551	SLC22A4 "Ergothioneine transpo	0.777	0.735	0.275	1.9e-35

TAIR|locus:2207360 OCT2 "AT1G79360" [Arabidopsis thaliana (taxid:3702)]

 Score = 1136 (405.0 bits), Expect = 3.1e-115, P = 3.1e-115
 Identities = 224/511 (43%), Positives = 320/511 (62%)

Query:    10 PVYQLGLDDQISPVVSLDEMIEQNLANLGLPQFIQVILISLLLIFESQQTFISVYTDEEP 69
             P   L  D   S   SLD+ IE  + + G  QF+Q  L+S   +F++QQTFISV+TD EP
Sbjct:     4 PTQPLLTDSNSSSPRSLDDTIESYIGSFGWAQFLQAALVSFSGVFDAQQTFISVFTDSEP 63

Query:    70 TWHCIN-NXXXXXXXXXXXXXXXXAWAWDRPSDTTIISDWSLECAGSSILSGLPSSCFFI 128
             TWHC + N                AW+WD     ++IS+W L+CAGS +  GLP S FF+
Sbjct:    64 TWHCTDSNSICHESISNICILPKTAWSWDYSPHVSVISEWGLQCAGSFV-KGLPESSFFV 122

Query:   129 GCLLGGLALSTLGDSSSLGRKKLLFLSCFAMSITALATIFANNIWIYSTIRFVAGFFRAP 188
             GCL+GGL LSTL DSS LGRK +LFLSC  M+I+ + T+F+ NIW+Y+ +RFV GF RA 
Sbjct:   123 GCLIGGLVLSTLADSS-LGRKNMLFLSCLVMAISTMLTVFSPNIWVYAVLRFVNGFGRAT 181

Query:   189 IMTSVIVLLSEMVSKRWRGQVVIIGFTFFSFGLVSLPAVAYLSRGSSWKMLYVWTSIPSI 248
             I T  +VL +E+V K+WRG+V I+ F  F  G +SLP +AY++RGSSW++LY WTSIP+I
Sbjct:   182 IGTCALVLSTELVGKKWRGRVGIMSFFGFMLGFLSLPLMAYMNRGSSWRILYAWTSIPTI 241

Query:   249 VCCIIIYPFISESPRWLFIHGHEAEAMAVLKRLAS-RSNYQSDYGLESCCLSNMPPKAKN 307
             + C+++  F+ ESPRWLF+ G   EA+++LKR+AS  S   S  G  S   S++P +   
Sbjct:   242 IYCVLVRFFVCESPRWLFVRGRREEAISILKRVASIPSTDVSSGGAISMSFSSLPFEEDE 301

Query:   308 VIPK--LDLYSSLKDLFNRKWALRRLLTIMALAFXXXXXXXXXXXXXXNLSFNIYLSLAF 365
               P   +++++++K L  ++WAL+RL  +MA+AF              NL FNIYLS AF
Sbjct:   302 EKPSTNVNIFTTMKVLVEKRWALKRLSAVMAIAFGIGLVYYGMPLALSNLDFNIYLSAAF 361

Query:   366 NGLLDIPAYLLTFILIERWSRKSSILTFCILSGTCSAICVAIGD----EQEVLQIGLELA 421
             N L+D+PA L+T  L+++ SR+++++ F  L G  S +  A+ +        LQ+ LEL 
Sbjct:   362 NALMDLPANLITLFLVDKLSRRNALIGFTALGGVSSVLIFALHNMRIGNHGALQLALELI 421

Query:   422 SFFSACVAFNVLLVFGTELFTTCVRNSTTSLVRQAVNLGAAFSPVLISAGRQNEXXXXXX 481
             S+FSAC AFN+ +++  ELF TCVRNS  ++ RQA+ LG  FSP++++AGR+N       
Sbjct:   422 SYFSACSAFNMEMIYTIELFPTCVRNSAIAMARQALVLGGVFSPIMVAAGRKNAFWSFGL 481

Query:   482 XXXXXXXXXXXXXXXPETIGVTLCDTLDQQE 512
                            PET G  LCDT+D++E
Sbjct:   482 FGLAIGLLGLFAVGLPETRGSDLCDTMDEEE 512

GO:0005351 "sugar:hydrogen symporter activity" evidence=ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0015075 "ion transmembrane transporter activity" evidence=IEA

GO:0015144 "carbohydrate transmembrane transporter activity" evidence=ISS

GO:0016020 "membrane" evidence=ISS

GO:0016021 "integral to membrane" evidence=IEA

GO:0022857 "transmembrane transporter activity" evidence=IEA

GO:0034220 "ion transmembrane transport" evidence=IEA

GO:0055085 "transmembrane transport" evidence=IEA

GO:0009705 "plant-type vacuole membrane" evidence=IDA

GO:0015706 "nitrate transport" evidence=RCA

TAIR|locus:2032825 OCT3 "AT1G16390" [Arabidopsis thaliana (taxid:3702)]

 Score = 1089 (388.4 bits), Expect = 2.9e-110, P = 2.9e-110
 Identities = 218/520 (41%), Positives = 316/520 (60%)

Query:     1 MEHSATPLIPVYQLGLDDQISPVVSLDEMIEQNLANLGLPQFIQVILISLLLIFESQQTF 60
             M  S  PL+  +    +  + P  SL+E IE+ + + G  QF+Q  L+S    F++QQTF
Sbjct:     1 MADSTRPLLSDFNSS-ESNLPPPRSLEETIERCIGDFGWAQFLQAALVSFAWFFDAQQTF 59

Query:    61 ISVYTDEEPTWHCINNXXXXXXXXXXXXXXXX----AWAWDRPSDTTIISDWSLECAGSS 116
             I+V+TD +P WHC N+                     W+WD     +IIS+W L+CAGS 
Sbjct:    60 ITVFTDSQPMWHCDNSDRVDSVCNTSSSNLCTLPNQTWSWDLNPHVSIISEWGLQCAGS- 118

Query:   117 ILSGLPSSCFFIGCLLGGLALSTLGDSSSLGRKKLLFLSCFAMSITALATIFANNIWIYS 176
              L G P+S FF+GCL+GGLALSTL DSS LGRK +L LSC  MS++++ T F+ +IW+Y+
Sbjct:   119 FLKGFPASSFFLGCLIGGLALSTLADSS-LGRKNMLLLSCLIMSLSSMLTAFSTSIWVYA 177

Query:   177 TIRFVAGFFRAPIMTSVIVLLSEMVSKRWRGQVVIIGFTFFSFGLVSLPAVAYLSRGSSW 236
              +RF+ G  RA I T  +VL +E+V K+WRGQV  +GF  F+ G +SLP + Y++ G+SW
Sbjct:   178 FLRFLNGCGRATIGTCALVLSTELVGKKWRGQVGAMGFFCFTLGFLSLPMLGYINEGNSW 237

Query:   237 KMLYVWTSIPSIVCCIIIYPFISESPRWLFIHGHEAEAMAVLKRLASRSNYQSDYGLESC 296
             + LYVWTSIP+++ C ++  F+ ESPRWL + G + EA+++L+ +AS +   S   L   
Sbjct:   238 RNLYVWTSIPTLIYCCLVRSFVRESPRWLIVKGRKEEAVSILQSIASNAITMSFTNL--- 294

Query:   297 CLSNMPPKAKNVIPKLDLYSSLKDLFNRKWALRRLLTIMALAFXXXXXXXXXXXXXXNLS 356
             C      ++K+  P  D+Y +LK L  + W+ RRLL  M + F              NL+
Sbjct:   295 CFEVENDQSKSN-P--DVYDALKILVRKSWSFRRLLAAMVVGFGIGMVYYGMPLALTNLN 351

Query:   357 FNIYLSLAFNGLLDIPAYLLTFILIERWSRKSSILTFCILSGTCSAICVAIGDEQEVLQI 416
             FN+YL + FN L + PA+L+TF  I++ +R+ +++ F  LSG  SA+   +G +   LQI
Sbjct:   352 FNLYLGVVFNALSEFPAFLITFFFIDKINRRDALIGFTALSGISSALIAVLGQQLGSLQI 411

Query:   417 GLELASFFSACVAFNVLLVFGTELFTTCVRNSTTSLVRQAVNLGAAFSPVLISAGRQNEX 476
              LEL SFFSAC AFN+ L++  E+F TCVRNS  S+VRQA+  G  FSPV+++AGR+N+ 
Sbjct:   412 VLELVSFFSACTAFNMTLIYTIEMFPTCVRNSAISMVRQALVFGGVFSPVMVAAGRENQF 471

Query:   477 XXXXXXXXXXXXXXXXXXXXPETIGVTLCDTLDQQEYFKT 516
                                 PET G  LCDT+D++EY KT
Sbjct:   472 WSYGLFGLIIGLCGLFVFGLPETRGSVLCDTMDEEEY-KT 510

GO:0005351 "sugar:hydrogen symporter activity" evidence=ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0015144 "carbohydrate transmembrane transporter activity" evidence=ISS

GO:0016020 "membrane" evidence=ISS

GO:0016021 "integral to membrane" evidence=IEA

GO:0022857 "transmembrane transporter activity" evidence=IEA

GO:0055085 "transmembrane transport" evidence=IEA

GO:0009705 "plant-type vacuole membrane" evidence=IDA

GO:0070417 "cellular response to cold" evidence=IEP

GO:0015706 "nitrate transport" evidence=RCA

TAIR|locus:2032790 OCT6 "AT1G16370" [Arabidopsis thaliana (taxid:3702)]

 Score = 962 (343.7 bits), Expect = 8.4e-97, P = 8.4e-97
 Identities = 194/492 (39%), Positives = 302/492 (61%)

Query:    24 VSLDEMIEQNLANLGLPQFIQVILISLLLIFESQQTFISVYTDEEPTWHCINNXXXXXXX 83
             ++ D+++EQ+L++ G  QF Q+ L+ L L+F++QQ FI+VYTD  PTWHC+N+       
Sbjct:    28 LTFDKIVEQSLSDFGFWQFFQISLVGLALLFDAQQIFITVYTDAYPTWHCLNHTICDPSA 87

Query:    84 XXXXXXXXXAWAWDRPSD-TTIISDWSLECAGSSILSGLPSSCFFIGCLLGGLALSTLGD 142
                      AW WD  S   ++IS++ LEC+ SS+L G+PSS F+IG ++GG  L+ + D
Sbjct:    88 SDICKLPRSAWEWDGGSQGKSVISEFGLECS-SSLLRGMPSSAFYIGAIVGGFFLALIPD 146

Query:   143 SSSLGRKKLLFLSCFAMSITALATIFANNIWIYSTIRFVAGFFRAPIMTSVIVLLSEMVS 202
              S LGRKKL+  S FAMSIT+++ IF+ N+WIY+ ++F+ GF R+   +  +VL+SE VS
Sbjct:   147 DS-LGRKKLVLFSTFAMSITSISVIFSTNVWIYTFLKFIIGFSRSQTWSYALVLISERVS 205

Query:   203 KRWRGQVVIIGFTFFSFGLVSLPAVAYLSRGSSWKMLYVWTSIPSIVCCIIIYPFISESP 262
              RWR +  +I FT F  G +SL  +A+L++ SSW+ LY++TS+P++  CI +Y F  ESP
Sbjct:   206 TRWRPRATMIPFTLFVLGFMSLSGIAFLAQDSSWRYLYLYTSVPAVFYCIFLYLFALESP 265

Query:   263 RWLFIHGHEAEAMAVLKRLASRSNYQSDYGLESCCLSNMPPKAKNVIPKLDLYSSLKDLF 322
             RWL + G + EA+ VL +++ +   +  Y LES  +S +P K +N   +   YS +KD F
Sbjct:   266 RWLHMQGKDKEAIDVLTKMSPK---EKAY-LESV-VSKLPLKQEN-FEQAPTYS-IKDFF 318

Query:   323 NRKWALRRLLTIMALAFXXXXXXXXXXXXXXNLSFNIYLSLAFNGLLDIPAYLLTFILIE 382
              RKWA RR+L +M + F              ++  NIYLS   N L+++P +++T IL+E
Sbjct:   319 FRKWAFRRILVVMIIMFGLGISYYGVPLAARDIDVNIYLSETLNALVELPTFVITPILLE 378

Query:   383 RWSRKSSILTFCILSGTCSAIC--VAIGDEQEVLQIGLELASFFSACVAFNVLLVFGTEL 440
             R++R+SS+L   +L G    +C  ++I  + E+     EL +FF A + FN++ VF  E+
Sbjct:   379 RFNRRSSVLVNTLLGGASGVLCFVLSILGKTEIA-FAFELGTFFCARIGFNLMAVFMVEM 437

Query:   441 FTTCVRNSTTSLVRQAVNLGAAFSPVLISAGRQNEXXXXXXXXXXXXXXXXXXXXXPETI 500
             F TCVR+S T + RQA+ +G A  P++ S GR                        PET 
Sbjct:   438 FPTCVRSSATMMFRQALVVGGACCPLIASIGRYIPSVSFAIFGIAMSGLGMFVLILPETK 497

Query:   501 GVTLCDTLDQQE 512
             G++LCD++++QE
Sbjct:   498 GLSLCDSMEEQE 509

GO:0005351 "sugar:hydrogen symporter activity" evidence=ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0015144 "carbohydrate transmembrane transporter activity" evidence=ISS

GO:0016020 "membrane" evidence=ISS

GO:0016021 "integral to membrane" evidence=IEA

GO:0022857 "transmembrane transporter activity" evidence=IEA

GO:0055085 "transmembrane transport" evidence=IEA

GO:0009705 "plant-type vacuole membrane" evidence=IDA

GO:0042631 "cellular response to water deprivation" evidence=IEP

GO:0071472 "cellular response to salt stress" evidence=IEP

GO:0015706 "nitrate transport" evidence=RCA

TAIR|locus:2206430 OCT5 "AT1G79410" [Arabidopsis thaliana (taxid:3702)]

 Score = 962 (343.7 bits), Expect = 8.4e-97, P = 8.4e-97
 Identities = 201/514 (39%), Positives = 307/514 (59%)

Query:     1 MEHSATPLIPVYQLGLDDQISPVVSLDEMIEQNLANLGLPQFIQVILISLLLIFESQQTF 60
             M  S  PL+P + +  D+  S  ++ D+++E++L++ G  QF+Q++L+ L L F+SQQ F
Sbjct:     1 MADSLAPLLPTH-IEEDEDTSSPLTFDKILEKSLSDFGFSQFLQIVLVGLALTFDSQQIF 59

Query:    61 ISVYTDEEPTWHCINNXXXXXXXXXXXXXXXXAWAWDRP-SDTTIISDWSLECAGSSILS 119
             I+V+TD  PTWHC+++                AW WD      ++IS++ LEC+ SS L 
Sbjct:    60 ITVFTDAYPTWHCLDHTICNPATTDICKIPRSAWDWDGGFKGKSVISEFDLECS-SSFLR 118

Query:   120 GLPSSCFFIGCLLGGLALSTLGDSSSLGRKKLLFLSCFAMSITALATIFANNIWIYSTIR 179
              LPSS F++G ++GG+ L+ + D S LGRK+LLF S FAMS+T ++   ++NIWIYS ++
Sbjct:   119 SLPSSTFYVGSIVGGVVLAMIPDGS-LGRKQLLFFSSFAMSLTGISIFLSSNIWIYSFLK 177

Query:   180 FVAGFFRAPIMTSVIVLLSEMVSKRWRGQVVIIGFTFFSFGLVSLPAVAYLSRGSSWKML 239
             FV GF R+   T  +VL+SE +S +WR +  ++ FT F  G +SL  +AYL R +SWK+L
Sbjct:   178 FVIGFARSQTGTYALVLISERISTKWRPRATMVPFTLFVLGFMSLSGIAYLVRHASWKVL 237

Query:   240 YVWTSIPSIVCCIIIYPFISESPRWLFIHGHEAEAMAVLKRLASRSNYQSDYGLESCCLS 299
             Y+ TSIP+ +  I IY F  ESPRWL + G   EA+ VLKR+ S +N    Y LES   S
Sbjct:   238 YLCTSIPAGIHSIFIYFFALESPRWLHLEGKNKEAIEVLKRI-SPAN--RGY-LESVS-S 292

Query:   300 NMPPKAKNVIPKLDLYSSLKDLFNRKWALRRLLTIMALAFXXXXXXXXXXXXXXNLSFNI 359
              + PK    + +   YS +KDLF  KWA RR+  +M + F              ++  NI
Sbjct:   293 RLRPK--ETLEQTSSYS-IKDLFIIKWAFRRVTLVMIIMFGLGMSYYGVPLAVRDIKVNI 349

Query:   360 YLSLAFNGLLDIPAYLLTFILIERWSRKSSILTFCILSGTCSAICVAIG-DEQEVLQIGL 418
             Y+S A N ++++P +++T IL+E++SR+SS+L  C++ G    +C  +    +  +   L
Sbjct:   350 YMSEALNAMVELPTFVVTPILLEQFSRRSSVLVNCLIGGASGVLCFVMSLYGRTKIAFAL 409

Query:   419 ELASFFSACVAFNVLLVFGTELFTTCVRNSTTSLVRQAVNLGAAFSPVLISAGRQNEXXX 478
             EL SFF A + FN++ ++  ELF TCVRNS T ++RQA+ +G A  P++ S GR      
Sbjct:   410 ELGSFFCARIGFNLMAIYLVELFPTCVRNSATMMLRQALVVGGACCPLIASLGRNVPSLS 469

Query:   479 XXXXXXXXXXXXXXXXXXPETIGVTLCDTLDQQE 512
                               PET G++LCDT+++QE
Sbjct:   470 FAVFGFAMSGLGLFALLLPETKGLSLCDTMEEQE 503

GO:0005351 "sugar:hydrogen symporter activity" evidence=ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0015144 "carbohydrate transmembrane transporter activity" evidence=ISS

GO:0016020 "membrane" evidence=ISS

GO:0016021 "integral to membrane" evidence=IEA

GO:0022857 "transmembrane transporter activity" evidence=IEA

GO:0055085 "transmembrane transport" evidence=IEA

GO:0009705 "plant-type vacuole membrane" evidence=IDA

GO:0042631 "cellular response to water deprivation" evidence=IEP

GO:0070417 "cellular response to cold" evidence=IEP

GO:0071472 "cellular response to salt stress" evidence=IEP

GO:0009407 "toxin catabolic process" evidence=RCA

GO:0010583 "response to cyclopentenone" evidence=RCA

GO:0015824 "proline transport" evidence=RCA

TAIR|locus:2197244 OCT1 "AT1G73220" [Arabidopsis thaliana (taxid:3702)]

 Score = 724 (259.9 bits), Expect = 1.4e-71, P = 1.4e-71
 Identities = 170/497 (34%), Positives = 255/497 (51%)

Query:    24 VSLDEMIEQNLANLGLPQFIQVILISLLLIFESQQTFISVYTDEEPTWHCINNXXXXXXX 83
             +++DE+IEQ++  LG  Q +  +L+S+  IF++Q T IS+++D +P    +         
Sbjct:    43 LTVDEVIEQHIGALGFAQILHALLVSIAWIFDAQTTLISIFSDAQPAARLLATGAIVEGA 102

Query:    84 XXXXXXXXXAWAWDRPSDTTIISDWSLECAGSSILSGLPSSCFFIGCLLGGLALSTLGDS 143
                       W W  P   T++S+W+L C     L  +PS+ FFIG L G      L DS
Sbjct:   103 SLCGLASGE-WEWIGPKSDTVVSEWNLICQ-HKFLVAVPSTLFFIGSLFGSGVYGYLADS 160

Query:   144 SSLGRKKLLFLSCFAMSITALATIFANNIWIYSTIRFVAGFFRAPIMTSVIVLLSEMVSK 203
                GRKK L LSC    +TA A  F+ N+W+Y+ +RF  GFFR+ I +  IVL +E+V K
Sbjct:   161 W-FGRKKTLLLSCVLTFVTAFAISFSPNVWVYAFLRFANGFFRSGIGSCCIVLATEIVGK 219

Query:   204 RWRGQVVIIGFTFFSFGLVSLPAVAYLSRGSSWKMLYVWTSIPSIVCCIIIYPFISESPR 263
             +WRGQV   GF FF+ G +SLP +AYL R  SW+ LY   S   +   + + PF  ESPR
Sbjct:   220 KWRGQVGQYGFFFFTLGFLSLPLMAYLER-KSWRNLYRIISFLPLGYAVCLLPFAYESPR 278

Query:   264 WLFIHGHEAEAMAVLKRLASRSNYQSDYGLESCCLSNMPPKAKNVIPKLDLYSSLKDLF- 322
             WL + G   EAM VLK+LA  +  Q    L     S + P     IP+ D  +S  + F 
Sbjct:   279 WLLVKGRNKEAMVVLKKLARLNGKQLPADL-----SLVDP-----IPERDDQTSSSEKFW 328

Query:   323 NRKWALRRLLTIMALAFXXXXXXXXXXXXXXNLSFNIYLSLAFNGLLDIPAYLLTFILIE 382
               KWA++R++ +M   F              NL+FN+YL++A N L++ PA  +   L+ 
Sbjct:   329 KTKWAVKRIIMVMMAGFGSGFVYYGIQLNAENLNFNLYLTVAVNALMEFPAVFIGSFLLG 388

Query:   383 RWSRKSSILTFCILSGTCSAICVAIGDEQEV--------LQIGLELASFFSACVAFNVLL 434
               +R+        L+G    +C  +   + +        LQ+ +E   F ++  A++VL 
Sbjct:   389 VMNRRPLFSNSSYLAGFACLLCAVLSIHRVIRAISVAKWLQLAVEAVGFMASSTAYDVLY 448

Query:   435 VFGTELFTTCVRNSTTSLVRQAVNLGAAFSPVLISAGRQNEXXXXXXXXXXXXXXXXXXX 494
             V+  ELF T VRN+  SL+RQA  LGA+ +P+L++ GR++                    
Sbjct:   449 VYCVELFPTNVRNTAVSLLRQAFMLGASAAPLLVALGRESAMMSFIVFGVASVLSGIVSL 508

Query:   495 XXPETIGVTLCDTLDQQ 511
                ET    L +TL QQ
Sbjct:   509 WLRETRNAPLYETLAQQ 525

GO:0005215 "transporter activity" evidence=ISS

GO:0005886 "plasma membrane" evidence=ISM;IDA

GO:0015144 "carbohydrate transmembrane transporter activity" evidence=ISS

GO:0016021 "integral to membrane" evidence=IEA

GO:0022857 "transmembrane transporter activity" evidence=IEA

GO:0055085 "transmembrane transport" evidence=IEA

GO:0016020 "membrane" evidence=ISS

GO:0015226 "carnitine transmembrane transporter activity" evidence=IDA

GO:0010150 "leaf senescence" evidence=IEP

GO:0015706 "nitrate transport" evidence=RCA

GO:0016036 "cellular response to phosphate starvation" evidence=RCA

GO:0019375 "galactolipid biosynthetic process" evidence=RCA

GO:0045892 "negative regulation of transcription, DNA-dependent" evidence=RCA

TAIR|locus:2083425 OCT4 "organic cation/carnitine transporter4" [Arabidopsis thaliana (taxid:3702)]

 Score = 528 (190.9 bits), Expect = 8.3e-51, P = 8.3e-51
 Identities = 130/452 (28%), Positives = 217/452 (48%)

Query:    26 LDEMIEQNLANLGLPQFIQVILISLLLIFESQQTFISVYTDEEPTWHCINNXXXXXXXXX 85
             +DEM+++     G  Q    +L  +    E+  T + ++ D+EP W C+ +         
Sbjct:    34 IDEMLQRYCGEFGRWQLKHFVLTCIAWALEAFHTMVMIFADQEPEWRCVGSDCRVGSLNC 93

Query:    86 XXXXXXXAWAWDRPSDTTIISDWSLECAGSSILSGLPSSCFFIGCLLGGLALSTLGDSSS 145
                    +W W     ++ +S+W L C G     GL  + FF GC++G      L DS  
Sbjct:    94 ELDPS--SWEWTAGKGSSTVSEWGLIC-GDKYKVGLVQALFFAGCMIGAGVFGHLSDSK- 149

Query:   146 LGRKKLLFLSCFAMSITALATIFANNIWIYSTIRFVAGFFRAPIMTSVIVLLSEMVSKRW 205
             LGRK  L + C   +I  +AT F+ N W Y  +RF+ GF    +  +  VL +E +    
Sbjct:   150 LGRKGSLTVVCIINAIFGIATAFSPNYWTYVVLRFLTGFSTGGVGLTAFVLATEPIGPSK 209

Query:   206 RGQVVIIGFTFFSFGLVSLPAVAYLSRGSSWKMLYVWTSIPSIVCCIIIYPFISESPRWL 265
             RG   +  F FFS G+  L  +AY+ R  SW+ L++ +S+PS++  +I+ PFISESPRW 
Sbjct:   210 RGVAGMSTFYFFSAGIAVLSGIAYVFR--SWRELFIVSSLPSLLFLLIVIPFISESPRWY 267

Query:   266 FIHGHEAEAMAVLKRLASRSNYQSDYGLESCCLSNMPPKAKNVIPKLDLYSSLKDLFNRK 325
              + G   EAM ++  +A  +      G+ +  L +   +  N      +  SLKD+    
Sbjct:   268 LVRGKVDEAMKLMHSIAKTNGRHIPAGV-TLALDD-DVENNNGERNTAVEGSLKDVILSP 325

Query:   326 WALRRLLTIMALAFXXXXXXXXXXXXXXNLSFNIYLSLAFNGLLDIPAYLLTFILIERWS 385
                 RL+  +A++F              NL  N+YL++  N + ++PA+ +T +L++++ 
Sbjct:   326 LMRMRLVISVAISFTVSIVYYGLSLNVGNLKTNLYLNVFVNAVSEMPAFAITAVLLDKYG 385

Query:   386 RKS-SILT--F-CILSGTCSAICVAIGDEQEVLQIGLELASFFSACVAFNVLLVFGTELF 441
             RK  SI T  F C+      ++  A G  + V  +   L   F     +N+L ++  ELF
Sbjct:   386 RKPLSIGTQWFSCVFCLVGFSVWGA-GPWKSVRMVSGVLG-IFGMAGTYNLLFIYIAELF 443

Query:   442 TTCVRNSTTSLVRQAVNLGAAFSPVLISAGRQ 473
              T VRN+      QA  +GA  +P ++  G +
Sbjct:   444 PTVVRNAALGCATQAAQMGAILAPFVVVLGEE 475

GO:0005215 "transporter activity" evidence=IEA

GO:0005351 "sugar:hydrogen symporter activity" evidence=ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0006810 "transport" evidence=IEA

GO:0015144 "carbohydrate transmembrane transporter activity" evidence=ISS

GO:0016020 "membrane" evidence=IEA;ISS

GO:0016021 "integral to membrane" evidence=IEA

GO:0022857 "transmembrane transporter activity" evidence=IEA

GO:0055085 "transmembrane transport" evidence=IEA

GO:0009535 "chloroplast thylakoid membrane" evidence=IDA

GO:0009705 "plant-type vacuole membrane" evidence=IDA

GO:0042631 "cellular response to water deprivation" evidence=IEP

GO:0006635 "fatty acid beta-oxidation" evidence=RCA

GO:0009407 "toxin catabolic process" evidence=RCA

GO:0010583 "response to cyclopentenone" evidence=RCA

GO:0015706 "nitrate transport" evidence=RCA

GO:0046482 "para-aminobenzoic acid metabolic process" evidence=RCA

UNIPROTKB|F1MII8 SLC22A8 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 375 (137.1 bits), Expect = 5.8e-40, Sum P(2) = 5.8e-40
 Identities = 109/424 (25%), Positives = 191/424 (45%)

Query:    94 WAWDRPSDTTIISDWSLECAGSSILSGLPSSCFFIGCLLGGLALSTLGDSSSLGRKKLLF 153
             W +D  S  +I+++W L C  S  L  L  S F  G L+GGL L  L DS   GRK +L 
Sbjct:    99 WTYDVNSRDSIVAEWDLVC-NSKKLKELAQSIFMAGILIGGLVLGALSDSCRFGRKPILT 157

Query:   154 LSCFAMSITALATIFANNIWIYSTIRFVAGFFRAPIMTSVIVLLSEMVSKRWRG-QVVII 212
              S   ++ +     F+     Y+  RF+ GF  + I  S ++L  E VS R R  + + +
Sbjct:   158 CSYLLLAASGSGAAFSPTFPTYTVFRFLCGFGISGITLSTVILNVEWVSTRMRAIKSIAV 217

Query:   213 GFTFFSFGLVSLPAVAYLSRGSSWKMLYVWTSIPSIVCCIIIYPFISESPRWLFIHGHEA 272
             G+ F++FG   LP +AY+     W+ L +  SIP     ++ + ++ ES RW+ + G  +
Sbjct:   218 GY-FYTFGQFVLPGLAYVI--PQWRWLQLTVSIPFFAFFLLSW-WLPESIRWMVLSGRSS 273

Query:   273 EAMAVLKRLASRSNYQSDYGLESCCLSNMPPKAKNVIPKLDLYSSLKDLFNRKWALRRLL 332
             +A+  L+++A+  N + + G +   L  +    +  +       S+ DLF R   LRR+ 
Sbjct:   274 KALKTLRQVAA-FNGKKEEG-KKLSLEEIKLNTQKEVALAKAKRSVADLF-RTPVLRRMT 330

Query:   333 TIMALA-FXXXXXXXXXXXXXXNLSFNIY-LSLAFNGLLDIPAYLLTFILIERWSRKSSI 390
               ++LA F                  N+Y L L F G+ D+PA  +T + I    R ++ 
Sbjct:   331 FCLSLAWFSTGFAYYSLAMGVEEFGVNLYILQLIFGGV-DVPAKFITTLAISYLGRHTTE 389

Query:   391 LTFCILSGTCSAICVAIGDEQEVLQIGLELASFFSACVA--FNVLLVFGTELFTTCVRNS 448
                 +L+G C    + +    +++ +   LA F   C++  F+ L +F +EL+ T  R +
Sbjct:   390 AALLLLAGGCILSLIFV--PADLMTLRTVLAVFGKGCLSGSFSCLFLFTSELYPTVTRQT 447

Query:   449 TTSLVRQAVNLGAAFSPVLISAGRQNEXXXXXXXXXXXXXXXXXXXXXPETIGVTLCDTL 508
                +      +G+  +P++                             PET+   L +T+
Sbjct:   448 GMGISNMWARVGSMTAPLVKITAELKPFIPNVIFGSIALLGGSAALFLPETLNRPLPETI 507

Query:   509 DQQE 512
             +  E
Sbjct:   508 EDVE 511

GO:0005452 "inorganic anion exchanger activity" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

MGI|MGI:1353479 Slc22a4 "solute carrier family 22 (organic cation transporter), member 4" [Mus musculus (taxid:10090)]

 Score = 386 (140.9 bits), Expect = 9.2e-36, P = 9.2e-36
 Identities = 114/432 (26%), Positives = 193/432 (44%)

Query:    94 WAWDRPSD-TTIISDWSLECAGSSILSGLPSSCFFIGCLLGGLALSTLGDSSSLGRKKLL 152
             W +D+    +TI+++W+L C      + L +S FF+G L G      L D    GRKK+L
Sbjct:   117 WEYDKDIFLSTIVTEWNLVCE-DDWKTPLTTSLFFVGVLCGSFVSGQLSDR--FGRKKVL 173

Query:   153 FLSCFAMSITALATIFANNIWIYSTIRF-VAGFFRAPIMTSVIVLLSEMVSKRWRGQVVI 211
             F +    +  +   IF+ N W   T+ F + G  +        +L +E++SK  R     
Sbjct:   174 FATMAVQTGFSFVQIFSTN-WEMFTVLFAIVGMGQISNYVVAFILGTEILSKSVRIIFST 232

Query:   212 IGF-TFFSFGLVSLPAVAYLSRGSSWKMLYVWTSIPSIVCCIIIYPFISESPRWLFIHGH 270
             +G  TFF+ G + LP  AY  R   W+ML +  ++P + C + ++ FI ESPRWL     
Sbjct:   233 LGVCTFFAIGYMVLPLFAYFIR--DWRMLLLALTLPGLFC-VPLWWFIPESPRWLISQRR 289

Query:   271 EAEAMAVLKRLASRSNYQSDYGL-ESCCLSNMPPKAKNVIPKLDLYSSLKDLFNRKWALR 329
              AEA  ++++ A  ++  +  G+ +   L  +    +  +  LDL+ +      R  A  
Sbjct:   290 FAEAEQIIQKAAKMNSIVAPAGIFDPLELQELNSLKQQKVIILDLFRT------RNIATI 343

Query:   330 RLLTIMALAFXXXXXXXXXXXXXXNLSFNIYLSLAFNGLLDIPAYLLTFILIERWSRKSS 389
              ++ +M L                NL  ++YL+   +GL+++PAY   ++L+    R+  
Sbjct:   344 TVMAVM-LWMLTSVGYFALSLNVPNLHGDVYLNCFLSGLIEVPAYFTAWLLLRTLPRRYI 402

Query:   390 ILTFCILSGTCSAICVAIGDEQEVLQIGLELASFFSACVAFNVLLVFGTELFTTCVRNST 449
             I       G    +   + ++   + IGL +   F    AF++L VF  EL+ T VRN  
Sbjct:   403 IAGVLFWGGGVLLLIQVVPEDYNFVSIGLVMLGKFGITSAFSMLYVFTAELYPTLVRNMA 462

Query:   450 TSLVRQAVNLGAAFSPVLISAGRQNEXXXXXXXXXXXXXXXXXXXXXPETIGVTLCDTLD 509
               +   A  +G+  +P  +  G  N                      PE+ GVTL + L+
Sbjct:   463 VGITSMASRVGSIIAPYFVYLGAYNRLLPYILMGSLTVLIGIITLFFPESFGVTLPENLE 522

Query:   510 QQEYFKTGGELC 521
             Q +  K  G  C
Sbjct:   523 QMQ--KVRGFRC 532

GO:0000166 "nucleotide binding" evidence=IEA

GO:0005215 "transporter activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005739 "mitochondrion" evidence=ISO;IDA

GO:0006641 "triglyceride metabolic process" evidence=IGI

GO:0006810 "transport" evidence=IEA

GO:0006811 "ion transport" evidence=IEA

GO:0006814 "sodium ion transport" evidence=IEA

GO:0009437 "carnitine metabolic process" evidence=IGI

GO:0015075 "ion transmembrane transporter activity" evidence=IEA

GO:0015226 "carnitine transmembrane transporter activity" evidence=ISO;IDA

GO:0015293 "symporter activity" evidence=IEA

GO:0015491 "cation:cation antiporter activity" evidence=ISO

GO:0015651 "quaternary ammonium group transmembrane transporter activity" evidence=ISO

GO:0015697 "quaternary ammonium group transport" evidence=ISO;IDA

GO:0015879 "carnitine transport" evidence=ISO;IDA

GO:0016020 "membrane" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0016324 "apical plasma membrane" evidence=ISO

GO:0022857 "transmembrane transporter activity" evidence=IEA

GO:0030165 "PDZ domain binding" evidence=ISO

GO:0034220 "ion transmembrane transport" evidence=ISO;IDA

GO:0055085 "transmembrane transport" evidence=IEA

UNIPROTKB|Q70BM6 SLC22A8 "Solute carrier family 22 member 8" [Sus scrofa (taxid:9823)]

 Score = 354 (129.7 bits), Expect = 1.6e-35, Sum P(2) = 1.6e-35
 Identities = 110/424 (25%), Positives = 189/424 (44%)

Query:    94 WAWDRPSDTTIISDWSLECAGSSILSGLPSSCFFIGCLLGGLALSTLGDSSSLGRKKLLF 153
             W ++     +I+++W L C+ SS L  +  S F  G L+GGL L  L D    GRK +L 
Sbjct:    99 WIYNIVDRDSIVTEWDLVCS-SSKLKEMAQSVFMAGILVGGLVLGALSDR--FGRKPILI 155

Query:   154 LSCFAMSITALATIFANNIWIYSTIRFVAGFFRAPIMTSVIVLLSEMVSKRWRG-QVVII 212
              S   +  +     F+    IY+  RF+ GF  + I  S  +L  E VS R+R  + + +
Sbjct:   156 FSYLLLGASGSGAAFSPTFSIYAVFRFLCGFSISGISLSTAILNVEWVSTRFRAIKSIAV 215

Query:   213 GFTFFSFGLVSLPAVAYLSRGSSWKMLYVWTSIPSIVCCIIIYPFISESPRWLFIHGHEA 272
             GF F++FG   LP +AY      W+ L +  S+P +   ++ + ++ ES RW+ + G  +
Sbjct:   216 GF-FYTFGQFILPGLAYAI--PQWRWLQLTVSVPFLTFFLLSW-WLPESIRWMVLSGKSS 271

Query:   273 EAMAVLKRLASRSNYQSDYGLESCCLSNMPPKAKNVIPKLDLYSSLKDLFNRKWALRRLL 332
             +A+  L+++A   N + + G E   L  +    +  I        + DLF R   LRR+ 
Sbjct:   272 KALKTLRQVAI-FNGKKEEG-EKLSLEELKLNLQKEISLAKARHGIADLF-RTPVLRRVT 328

Query:   333 TIMALA-FXXXXXXXXXXXXXXNLSFNIY-LSLAFNGLLDIPAYLLTFILIERWSRKSSI 390
               ++LA F                  N+Y L L F G+ D+PA  +T + I    R  + 
Sbjct:   329 LCLSLAWFATGFAYYSLAMGVEEFGVNLYVLQLIFGGV-DVPAKFITMLSISYLGRHITE 387

Query:   391 LTFCILSGTCSAICVAIGDEQEVLQIGLELASFFSACVA--FNVLLVFGTELFTTCVRNS 448
                 +L+G C  I   I    +++ +   LA F   C++  F+ L ++ +EL+ T +R +
Sbjct:   388 GIVLLLAGGC--ILALIFVPLDLMTLRTVLAVFGKGCLSGSFSCLFLYTSELYPTVIRQT 445

Query:   449 TTSLVRQAVNLGAAFSPVLISAGRQNEXXXXXXXXXXXXXXXXXXXXXPETIGVTLCDTL 508
                       +G+  +P++   G                         PET+   L +T+
Sbjct:   446 GMGASNLWARVGSMTAPLVKITGELQPFIPNIIFGTIALLGGSAALFLPETLNRPLPETI 505

Query:   509 DQQE 512
             +  E
Sbjct:   506 EDIE 509

GO:0016323 "basolateral plasma membrane" evidence=IEA

GO:0005452 "inorganic anion exchanger activity" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0009636 "response to toxic substance" evidence=IEA

UNIPROTKB|C0MP43 SLC22A4 "Ergothioneine transporter (ETT)" [Sus scrofa (taxid:9823)]

 Score = 383 (139.9 bits), Expect = 1.9e-35, P = 1.9e-35
 Identities = 117/425 (27%), Positives = 189/425 (44%)

Query:    96 WDRPSD---TTIISDWSLECAGSSILSGLPSSCFFIGCLLGGLALSTLGDSSSLGRKKLL 152
             W+   D   +TI+++WSL C      + L +S FFIG L+G      L D    GRK +L
Sbjct:   117 WEFSQDVYLSTIVTEWSLVCE-DDWKTPLTTSLFFIGVLVGSFVSGQLSDR--FGRKSIL 173

Query:   153 FLSCFAMSITALATIFANNIWIYSTIRFV-AGFFRAPIMTSVIVLLSEMVSKRWRGQVVI 211
             F +    +  +   IF+ N W   T+ FV  G  +        +L +E++ K  R     
Sbjct:   174 FATMAIQTGFSFLQIFSIN-WEMFTVLFVIVGMGQISNYVVAFILGTEILGKSVRIIFST 232

Query:   212 IGF-TFFSFGLVSLPAVAYLSRGSSWKMLYVWTSIPSIVCCIIIYPFISESPRWLFIHGH 270
             +G  TFF+ G + LP  AY  R   W+ML +  ++P ++C + ++ FI ESPRWL     
Sbjct:   233 LGVCTFFAVGYMLLPLFAYFIR--DWRMLLLALTVPGVLC-VPLWWFIPESPRWLISQRR 289

Query:   271 EAEAMAVLKRLASRSNYQSDYGLESCCLSNMPPKAKNVIPKLDLYSSLKDLFNRKWALRR 330
               EA  +++R A  +N  +   +        P K + V   LDL+ +      R  A+  
Sbjct:   290 FREAEEIIQRAAKMNNVAAPVVIFDPVEELNPLKQQKVFI-LDLFKT------RNIAIIT 342

Query:   331 LLTIMALAFXXXXXXXXXXXXXXNLSFNIYLSLAFNGLLDIPAYLLTFILIERWSRKSSI 390
             ++ ++ L                NL  + YL+  F+ L+++PAY+  ++L+    R+  I
Sbjct:   343 IMFLL-LWMLTSVGYFALSLNTPNLHGDAYLNCFFSALVEVPAYVTAWLLLRTLPRRYVI 401

Query:   391 LTFCILSGTCSAICVAIGDEQEVLQIGLELASFFSACVAFNVLLVFGTELFTTCVRNSTT 450
                 +L G    +   +  +   L IGL +   F    AF++L VF  EL+ T VRN   
Sbjct:   402 AGVLLLGGGVLLLIQLVPADYNFLSIGLAMIGKFGITSAFSMLYVFTAELYPTLVRNMAV 461

Query:   451 SLVRQAVNLGAAFSPVLISAGRQNEXXXXXXXXXXXXXXXXXXXXXPETIGVTLCDTLDQ 510
              L   A  +G+  +P  +  G  N                      PE+ G+TL +TL Q
Sbjct:   462 GLTSMASRIGSIVAPYFVYLGAYNRVLPYILMGSLTVLIGIITLFLPESFGMTLPETLGQ 521

Query:   511 QEYFK 515
              +  K
Sbjct:   522 MQKVK 526

GO:0030165 "PDZ domain binding" evidence=IEA

GO:0016324 "apical plasma membrane" evidence=IEA

GO:0015491 "cation:cation antiporter activity" evidence=IEA

GO:0015226 "carnitine transmembrane transporter activity" evidence=IEA

GO:0009437 "carnitine metabolic process" evidence=IEA

GO:0006641 "triglyceride metabolic process" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

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Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
O64515	OCT2_ARATH	No assigned EC number	0.4853	0.9616	0.9506	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

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Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

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Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	521
TIGR00898	505	TIGR00898, 2A0119, cation transport protein	1e-91
pfam00083	449	pfam00083, Sugar_tr, Sugar (and other) transporter	2e-23
TIGR00879	481	TIGR00879, SP, MFS transporter, sugar porter (SP)	7e-18
pfam07690	346	pfam07690, MFS_1, Major Facilitator Superfamily	1e-11
cd06174	352	cd06174, MFS, The Major Facilitator Superfamily (M	3e-11
TIGR00895	398	TIGR00895, 2A0115, benzoate transport	6e-10
TIGR00880	141	TIGR00880, 2_A_01_02, Multidrug resistance protein	6e-09
TIGR00891	405	TIGR00891, 2A0112, putative sialic acid transporte	2e-07
TIGR00893	399	TIGR00893, 2A0114, D-galactonate transporter	2e-05
TIGR01299	742	TIGR01299, synapt_SV2, synaptic vesicle protein SV	2e-05
cd06174	352	cd06174, MFS, The Major Facilitator Superfamily (M	2e-04
PRK10077	479	PRK10077, xylE, D-xylose transporter XylE; Provisi	6e-04
TIGR00881	379	TIGR00881, 2A0104, phosphoglycerate transporter fa	0.004

>gnl|CDD|233176 TIGR00898, 2A0119, cation transport protein

 Score =  288 bits (739), Expect = 1e-91
 Identities = 128/415 (30%), Positives = 204/415 (49%), Gaps = 14/415 (3%)

Query: 94  WAWD-RPSDTTIISDWSLECAGSSILSGLPSSCFFIGCLLGGLALSTLGDSSSLGRKKLL 152
           W +      +TI+++W L C  +     L  SCFF+G LLG      L D    GRKK+L
Sbjct: 104 WEYSYDTFSSTIVTEWDLVCEDAW-KVDLTQSCFFVGVLLGSFVFGYLSDR--FGRKKVL 160

Query: 153 FLSCFAMSITALATIFANNIWIYSTIRFVAGFFRAPIMTSVIVLLSEMVSKRWRGQVVII 212
            LS    +++ + T F+ N  ++   R + G     I    +VL +E + K+ R  V  +
Sbjct: 161 LLSTLVTAVSGVLTAFSPNYTVFLVFRLLVGMGIGGIWVQAVVLNTEFLPKKQRAIVGTL 220

Query: 213 GFTFFSFGLVSLPAVAYLSRGSSWKMLYVWTSIPSIVCCIIIYPFISESPRWLFIHGHEA 272
              FFS GLV LP VAY      W+ L +  S+P+ +  ++ + F+ ESPRWL   G   
Sbjct: 221 IQVFFSLGLVLLPLVAYFIP--DWRWLQLAVSLPTFLFFLLSW-FVPESPRWLISQGRIE 277

Query: 273 EAMAVLKRLASRSNYQSDYGLESCCLSNMPPKAKNVIPKLDLYSSLKDLFNRKWALRRLL 332
           EA+ +L+R+A  +  +    +            K++      YS   DLF      +  L
Sbjct: 278 EALKILQRIAKINGKKLPAEVL------SLSLEKDLSSSKKQYS-FLDLFRTPNLRKTTL 330

Query: 333 TIMALAFGIGVVYFGLLLGVGNLSFNIYLSLAFNGLLDIPAYLLTFILIERWSRKSSILT 392
            +M L F     Y+GL+L +GNL  NIYL L  +GL+++PA L+T +LI+R  R+ ++  
Sbjct: 331 CLMMLWFTTAFSYYGLVLDLGNLGGNIYLDLFISGLVELPAKLITLLLIDRLGRRYTMAA 390

Query: 393 FCILSGTCSAICVAIGDEQEVLQIGLELASFFSACVAFNVLLVFGTELFTTCVRNSTTSL 452
             +L+G    + + +  +   L+  L +   F    AF ++ ++  EL+ T VRN    +
Sbjct: 391 SLLLAGVALLLLLFVPVDLYFLRTALAVLGKFGITSAFQMVYLYTAELYPTVVRNLGVGV 450

Query: 453 VRQAVNLGAAFSPVLISAGRQNEFLSFGVFGLVVFCFGFFVVFLPETIGVTLCDT 507
                 +G+  SP L+  G +  FL   +FG +    G   +FLPET GV L +T
Sbjct: 451 CSTMARVGSIISPFLVYLGEKWLFLPLVLFGGLALLAGILTLFLPETKGVPLPET 505

[Transport and binding proteins, Cations and iron carrying compounds]. Length = 505

>gnl|CDD|215702 pfam00083, Sugar_tr, Sugar (and other) transporter

 Score =  102 bits (257), Expect = 2e-23
 Identities = 106/424 (25%), Positives = 159/424 (37%), Gaps = 51/424 (12%)

Query: 111 ECAGSSILSGLPSSCFFIGCLLGGLALSTLGDSSSLGRKKLLFLSCFAMSITALATIFA- 169
            CA S++LSGL  S F +GCL+G L    LGD    GRKK L +      I AL   FA 
Sbjct: 40  ACAASTVLSGLIVSIFSVGCLIGSLFAGKLGDR--FGRKKSLLIGNVLFVIGALLQGFAK 97

Query: 170 -NNIWIYSTIRFVAGFFRAPIMTSVIVLLSEMVSKRWRGQVVIIGFTFFSFGLV----SL 224
             + ++    R + G     I   V + +SE+  K+ RG +  +     +FG++      
Sbjct: 98  GKSFYMLIVGRVIVGLGVGGISVLVPMYISEIAPKKLRGALGSLYQLGITFGILVAAIIG 157

Query: 225 PAVAYLSRGSSWKMLYVWTSIPSIVCCIIIYPFISESPRWLFIHGHEAEAMAVLKRLASR 284
             +   S    W++      +P+I+  I +  F+ ESPRWL + G   EA AVL +L   
Sbjct: 158 LGLNKYSNSDGWRIPLGLQFVPAILLLIGL-LFLPESPRWLVLKGKLEEARAVLAKLR-- 214

Query: 285 SNYQSDYGLESCCLSNMPPKAKNVIPKLDLYSSLKDLFNRKWALRRLLTIMALAFGIGVV 344
                  G+          K           +S  +LF  K   +RLL        +GV+
Sbjct: 215 -------GVSDVDQEIQEEKDSLERSVEAEKASWLELFRGKTVRQRLL--------MGVM 259

Query: 345 YFGLLLGVGNLSFNIYLSLAFNGLLDIPAYLLTFI--------------LIERWSRKSSI 390
                   G  +   Y    F  L    + L+T I              L++R+ R+  +
Sbjct: 260 LQIFQQLTGINAIFYYSPTIFETLGLSDSLLVTIIVGVVNFVFTFIAIFLVDRFGRRP-L 318

Query: 391 LTFCILSGTCSAICVAIG----DEQEVLQIG-LELASFFSACVAFNVLLVFG---TELFT 442
           L           + + +      + +   I  +     F A  A     V     +ELF 
Sbjct: 319 LLLGAAGMAICFLVLGVALLGVAKSKGAGIVAIVFILLFIAFFALGWGPVPWVIVSELFP 378

Query: 443 TCVRNSTTSLVRQAVNLGAAFSPVLISAGRQN-EFLSFGVF-GLVVFCFGFFVVFLPETI 500
             VR    ++   A  L       L            F VF GL+V    F   F+PET 
Sbjct: 379 LGVRPKAMAIATAANWLANFLIGFLFPIITGAIGGYVFLVFAGLLVLFILFVFFFVPETK 438

Query: 501 GVTL 504
           G TL
Sbjct: 439 GRTL 442

Length = 449

>gnl|CDD|233165 TIGR00879, SP, MFS transporter, sugar porter (SP) family

 Score = 85.9 bits (213), Expect = 7e-18
 Identities = 103/423 (24%), Positives = 152/423 (35%), Gaps = 46/423 (10%)

Query: 115 SSILSGLPSSCFFIGCLLGGLALSTLGDSSSLGRKKLLFLSC---FAMSITALATIFANN 171
           SS L GL  S F +G  +G L    L D    GRKK L +        +I      FA +
Sbjct: 69  SSSLWGLVVSIFLVGGFIGALFAGWLSDR--FGRKKSLLIIALLFVIGAILMGLAAFALS 126

Query: 172 IWIYSTIRFVAGFFRAPIMTSVIVLLSEMVSKRWRGQVVIIGFTFFSFGLV----SLPAV 227
           + +    R + G         V + LSE+  K  RG +  +     +FG++         
Sbjct: 127 VEMLIVGRVLLGIGVGIASALVPMYLSEIAPKALRGALTSLYQLAITFGILVAYGFGSGK 186

Query: 228 AYLSRGSSWKMLYVWTSIPSIVCCIIIYPFISESPRWLFIHGHEAEAMAVLKRLASRSNY 287
             L+    W++      IP+ +  + +  F+ ESPRWL   G   EA   L RL  R   
Sbjct: 187 VSLNNTLGWRIPLGLQLIPAGLLFLGL-FFLPESPRWLVGKGRVEEARKSLARL--RGTS 243

Query: 288 QSDYGLESCCLSNMPPKAKNVIPKLDLYSSLKDLFNRKWA-LRRLLTIMALAF-----GI 341
             D  L            K  I K  +  S   LF+      RRL   + L +     GI
Sbjct: 244 GEDKELL---DELELIDIKRSIEKRSVQPSWGSLFSSTRRIRRRLFLGVVLQWFQQFTGI 300

Query: 342 GVV-YFGL----LLGVGNLSFNIYLSLAFNGLLDIPAYLLTFILIERWSRKSSILTFCIL 396
             + Y+        GV        +S+   G ++     +   L++R+ R+  +L     
Sbjct: 301 NAIMYYSPTIFENAGVST-DHAFLVSIIV-GAVNFAFTFVAIFLVDRFGRR-PLLLIGAA 357

Query: 397 SGTCS----AICVAIGDEQEVLQIG---LELASFFSACVAFNVLLVF---GTELFTTCVR 446
                     I  A          G   +     F A  A     V     +E+F   +R
Sbjct: 358 GMAICLFVLGILGASFVTGSSKSSGNVAIVFILLFIAFFAMGWGPVPWVIVSEIFPLSLR 417

Query: 447 NSTTSLVRQAVNL-----GAAFSPVLISAGRQNEFLSFGVFGLVVFCFGFFVVFLPETIG 501
               S+   A  L     G  F  +L S G    F+ FG   ++   F +F  FLPET G
Sbjct: 418 PKGISIAVAANWLANFIVGFLFPTMLESIGVGGVFIFFGGLNVLGLIFVYF--FLPETKG 475

Query: 502 VTL 504
            TL
Sbjct: 476 RTL 478

This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083) [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 481

>gnl|CDD|219516 pfam07690, MFS_1, Major Facilitator Superfamily

 Score = 65.9 bits (161), Expect = 1e-11
 Identities = 65/355 (18%), Positives = 118/355 (33%), Gaps = 42/355 (11%)

Query: 115 SSILSGLPSSCFFIGCLLGGLALSTLGDSSSLGRKKLLFLSCFAMSITALATIFANNIWI 174
           S    GL  + F +G  L       L D    GR+++L +     ++  L  +FA+++W+
Sbjct: 30  SPTEIGLLLTAFSLGYALAQPLAGRLSDR--FGRRRVLLIGLLLFALGLLLLLFASSLWL 87

Query: 175 YSTIRFVAGFFRAPIMTSVIVLLSEMVSKRWRGQVVIIGFTFFSFGLVSLPAVA-YLSRG 233
              +R + G     +  +   L+++      RG+ + +    F  G    P +   L+  
Sbjct: 88  LLVLRVLQGLGGGALFPAAAALIADWFPPEERGRALGLLSAGFGLGAALGPLLGGLLASL 147

Query: 234 SSWKMLYVWTSIPSIVCCIIIYPFISESPRWLFIHGHEAEAMAVLKRLASRSNYQSDYGL 293
             W+  ++  +I +++  ++    +   P                               
Sbjct: 148 FGWRAAFLILAILALLAAVLAALLLPRPPP------------------------------ 177

Query: 294 ESCCLSNMPPKAKNVIPKLDLYSSLKDLFNRKW-ALRRLLTIMALAFGIGVVYFGLLLGV 352
                               L  + K L       L   L +   AF   + Y  L   V
Sbjct: 178 ------ESKRPKPAEEAPAPLVPAWKLLLRDPVLWLLLALLLFGFAFFALLTYLPLYQEV 231

Query: 353 GNLS-FNIYLSLAFNGLLDIPAYLLTFILIERWSRKSSILTFCILSGTCS-AICVAIGDE 410
             LS     L L   GLL     LL   L +R  R+  +L   +L    +  + +    E
Sbjct: 232 LGLSALLAGLLLGLAGLLGAIGRLLLGRLSDRLGRRRRLLLALLLLILAALGLALLSLTE 291

Query: 411 QEVLQIGLELASFFSACVAFNVLLVFGTELFTTCVRNSTTSLVRQAVNLGAAFSP 465
             +  +   L   F A + F  L    ++L     R + + L   A +LG A  P
Sbjct: 292 SSLWLLVALLLLGFGAGLVFPALNALVSDLAPKEERGTASGLYNTAGSLGGALGP 346

Length = 346

>gnl|CDD|119392 cd06174, MFS, The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters

 Score = 64.6 bits (158), Expect = 3e-11
 Identities = 33/158 (20%), Positives = 72/158 (45%), Gaps = 3/158 (1%)

Query: 102 TTIISDWSLECAGSSILSGLPSSCFFIGCLLGGLALSTLGDSSSLGRKKLLFLSCFAMSI 161
           +  +   + +   S+  +GL  S F +G  LG L    L D    GR+++L L     ++
Sbjct: 19  SPALPLLAEDLGLSASQAGLIVSAFSLGYALGSLLAGYLSDR--FGRRRVLLLGLLLFAL 76

Query: 162 TALATIFANNIWIYSTIRFVAGFFRAPIMTSVIVLLSEMVSKRWRGQVVIIGFTFFSFGL 221
            +L   FA+++W+    RF+ G     +  +   L++E    + RG+ + +    F  G 
Sbjct: 77  GSLLLAFASSLWLLLVGRFLLGLGGGALYPAAAALIAEWFPPKERGRALGLFSAGFGLGA 136

Query: 222 VSLPAVA-YLSRGSSWKMLYVWTSIPSIVCCIIIYPFI 258
           +  P +   L+    W+ L++  +I  ++  +++   +
Sbjct: 137 LLGPLLGGLLAESLGWRWLFLILAILGLLLALLLLFLL 174

MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3-phosphate transporter), LacY (lactose permease), and EmrD (multidrug transporter), MFS proteins are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement. Bacterial members function primarily for nutrient uptake, and as drug-efflux pumps to confer antibiotic resistance. Some MFS proteins have medical significance in humans such as the glucose transporter Glut4, which is impaired in type II diabetes, and glucose-6-phosphate transporter (G6PT), which causes glycogen storage disease when mutated. Length = 352

>gnl|CDD|233175 TIGR00895, 2A0115, benzoate transport

 Score = 60.8 bits (148), Expect = 6e-10
 Identities = 56/251 (22%), Positives = 97/251 (38%), Gaps = 31/251 (12%)

Query: 103 TIISDWSLECA-GSSILSGLPSSCFFIGCLLGGLALSTLGDSSSLGRKKLLFLSCFAMSI 161
            I ++W L+      + S        IG   G L    L D   +GR+++L  S    S+
Sbjct: 42  AISAEWGLDPVQLGFLFSAG-----LIGMAFGALFFGPLADR--IGRRRVLLWSILLFSV 94

Query: 162 TALATIFANNIWIYSTIRFVAGFFRAPIMTSVIVLLSEMVSKRWRGQVVIIGFTFFSFG- 220
             L    A N+     +RF+AG     +M ++  L+SE   KR+RG  V + F  +  G 
Sbjct: 95  FTLLCALATNVTQLLILRFLAGLGLGGLMPNLNALVSEYAPKRFRGTAVGLMFCGYPIGA 154

Query: 221 ----LVSLPAVAYLSRGSSWK-MLYVWTSIPSIVCCIIIYPFISESPRWLFIHGHEAEAM 275
                ++   +        W+ + YV    P ++  +++  F+ ES  +L     E    
Sbjct: 155 AVGGFLAGWLIPVF----GWRSLFYVGGIAPLLLLLLLMR-FLPESIDFLVSKRPET-VR 208

Query: 276 AVLKRLASRSNYQSDYGLESCCLSNMPPKAKNVIPKLDLYSSLKDLFNRKWALRRLLTIM 335
            ++  +A +   ++   L          KA     +    S  K LF  K A   +L  +
Sbjct: 209 RIVNAIAPQMQAEAQSALP-------EQKATQGTKR----SVFKALFQGKTARITVLLWL 257

Query: 336 ALAFGIGVVYF 346
                +  VYF
Sbjct: 258 LYFMLLVGVYF 268

[Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 398

>gnl|CDD|233166 TIGR00880, 2_A_01_02, Multidrug resistance protein

 Score = 54.2 bits (131), Expect = 6e-09
 Identities = 29/139 (20%), Positives = 61/139 (43%), Gaps = 3/139 (2%)

Query: 126 FFIGCLLGGLALSTLGD--SSSLGRKKLLFLSCFAMSITALATIFANNIWIYSTIRFVAG 183
              G  LG L  S L    +   GRK +L +  F   ++      ++NI +    RF+ G
Sbjct: 3   LLAGYALGQLIYSPLSGLLTDRFGRKPVLLVGLFIFVLSTAMFALSSNITVLIIARFLQG 62

Query: 184 FFRAPIMTSVIVLLSEMVSKRWRGQVVIIGFTFFSFG-LVSLPAVAYLSRGSSWKMLYVW 242
           F  A  + +   L++++     RG  + +     + G L+  P    L++   W+  +++
Sbjct: 63  FGAAFALVAGAALIADIYPPEERGVALGLMSAGIALGPLLGPPLGGVLAQFLGWRAPFLF 122

Query: 243 TSIPSIVCCIIIYPFISES 261
            +I ++   I++   + E+
Sbjct: 123 LAILALAAFILLAFLLPET 141

Length = 141

>gnl|CDD|233172 TIGR00891, 2A0112, putative sialic acid transporter

 Score = 53.0 bits (127), Expect = 2e-07
 Identities = 65/345 (18%), Positives = 114/345 (33%), Gaps = 34/345 (9%)

Query: 133 GGLALSTLGDSSSLGRKKLLFLSCFAMSITALATIFANNIWIYSTIRFVAGFFRAPIMTS 192
           G L     GD    GR+  +  S    S   LA  FA         R V G        S
Sbjct: 63  GALMFGLWGDRY--GRRLPMVTSIVLFSAGTLACGFAPGYITMFIARLVIGIGMGGEYGS 120

Query: 193 VIVLLSEMVSKRWRGQVVIIGFTFFSFGLVSLPAVAYLS----RGSSWKMLYVWTSIPSI 248
               + E   K  R +   +  + ++ G V + A  Y       G  W+ L+ + SI  I
Sbjct: 121 SAAYVIESWPKHLRNKASGLLISGYAVGAV-VAAQVYSLVVPVWGDGWRALF-FISILPI 178

Query: 249 VCCIIIYPFISESPRWLFIHGHEAEAMAVLKRLASRSNYQSDYGLESCCLSNMPPKAKNV 308
           +  + +   I E+  W   H       A+++ +                      +  N+
Sbjct: 179 IFALWLRKNIPEAEDWKEKH----AGKALVRTMVDILY-------------GGEHRIANI 221

Query: 309 IPKLDLYSSLKDLFNRKWALRRLLTIMALAF-----GIGVVYFGLLLGVGNLS-FNIYLS 362
           +  + L +++     ++W     L ++ L        I  +    L     LS   +   
Sbjct: 222 V--MTLAAAMVQSAGKRWPTFVYLVVLVLFANLYSHPIQDLLPTYLKADLGLSPHTVANI 279

Query: 363 LAFNGLLDIPAYLLTFILIERWSRKSSILTFCILSGTCSAICVAIGDEQEVLQIGLELAS 422
           + F+ +  I    +   L +   R+ + +   +          AIG    VL +GL    
Sbjct: 280 VVFSNIGAIVGGCVFGFLGDWLGRRKAYVCSLLAGQLLIIPVFAIGANVAVLGLGLFFQQ 339

Query: 423 FFSACVAFNVLLVFGTELFTTCVRNSTTSLVRQAVNLGAAFSPVL 467
                +   +L     E F T  R +      Q  NLG A +P++
Sbjct: 340 MLVQGIW-GILPKHLGEYFPTDQRAAGLGFTYQLGNLGGALAPII 383

[Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 405

>gnl|CDD|233174 TIGR00893, 2A0114, D-galactonate transporter

 Score = 46.9 bits (112), Expect = 2e-05
 Identities = 27/145 (18%), Positives = 51/145 (35%), Gaps = 3/145 (2%)

Query: 120 GLPSSCFFIGCLLGGLALSTLGDSSSLGRKKLLFLSCFAMSITALATIFANNIWIYSTIR 179
           G   S F  G ++G      L D    G +K L +      +      FA        +R
Sbjct: 32  GYVFSAFSWGYVVGQFPGGWLLDR--FGARKTLAVFIVIWGVFTGLQAFAGAYVSLYILR 89

Query: 180 FVAGFFRAPIMTSVIVLLSEMVSKRWRGQVVIIGFTFFSFGLVSLPAVAYLSR-GSSWKM 238
            + G   AP    +I++++       R   V I  +    G +    +        SW+ 
Sbjct: 90  VLLGAAEAPFFPGIILIVASWFPASERATAVSIFNSAQGLGGIIGGPLVGWILIHFSWQW 149

Query: 239 LYVWTSIPSIVCCIIIYPFISESPR 263
            ++   +  I+  ++   FI + P+
Sbjct: 150 AFIIEGVLGIIWGVLWLKFIPDPPQ 174

[Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 399

>gnl|CDD|130366 TIGR01299, synapt_SV2, synaptic vesicle protein SV2

 Score = 46.9 bits (111), Expect = 2e-05
 Identities = 40/177 (22%), Positives = 71/177 (40%), Gaps = 17/177 (9%)

Query: 119 SGLPSSCFFIGCLLGGLALSTLGDSSSLGRKKLLFLSCFAMSITALATIFANNIWIYSTI 178
            G+     ++G ++G      L D   LGRK+ L +        A  + F      +   
Sbjct: 204 KGMLGLIVYLGMMVGAFFWGGLADK--LGRKQCLLICLSVNGFFAFFSSFVQGYGFFLFC 261

Query: 179 RFVAGFFRAPIMTSVIVLLSEMVSKRWRGQVVIIGFTFFSFGLVSLPAVAY--------- 229
           R ++GF     +  V    +E +++  RG+ +     F+  G +   A+A+         
Sbjct: 262 RLLSGFGIGGAIPIVFSYFAEFLAQEKRGEHLSWLCMFWMIGGIYAAAMAWAIIPHYGWS 321

Query: 230 LSRGS-----SWKMLYVWTSIPSIVCCIIIYPFISESPRWLFIHGHEAEAMAVLKRL 281
              GS     SW++  +  + P  V  I    F+ ESPR+   +G   EA  +LK +
Sbjct: 322 FQMGSAYQFHSWRVFVIVCAFPC-VFAIGALTFMPESPRFFLENGKHDEAWMILKLI 377

This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by PFAM model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices. Length = 742

>gnl|CDD|119392 cd06174, MFS, The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters

 Score = 43.5 bits (103), Expect = 2e-04
 Identities = 42/182 (23%), Positives = 68/182 (37%), Gaps = 11/182 (6%)

Query: 326 WALRRLLTIMALAFGIGVVYFGLLL--------GVGNLSFNIYLSLAFNGLLDIPAYLLT 377
           + LR LL +    F +   Y+GLL          +G  +    L L+  GL  I   LL 
Sbjct: 172 FLLRLLLLLALAFFLLSFGYYGLLTYLPLYLQEVLGLSAAEAGLLLSLFGLGGILGALLG 231

Query: 378 FILIERWSRKSSILTFCILSGTCSAICVAIGDEQEVLQIGLELASFFSACVAFNVLLVFG 437
            +L +R  R+  +L   +L      + +A+     +L + L L  F      F  LL   
Sbjct: 232 GLLSDRLGRRRLLLLIGLLLAALGLLLLALAPSLALLLVALLLLGFGLGFA-FPALLTLA 290

Query: 438 TELFTTCVRNSTTSLVRQAVNLGAAFSPVLISAGRQNE--FLSFGVFGLVVFCFGFFVVF 495
           +EL     R + + L     +LG A  P+L             F +   +       ++ 
Sbjct: 291 SELAPPEARGTASGLFNTFGSLGGALGPLLAGLLLDTGGYGGVFLILAALALLAALLLLL 350

Query: 496 LP 497
           LP
Sbjct: 351 LP 352

MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3-phosphate transporter), LacY (lactose permease), and EmrD (multidrug transporter), MFS proteins are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement. Bacterial members function primarily for nutrient uptake, and as drug-efflux pumps to confer antibiotic resistance. Some MFS proteins have medical significance in humans such as the glucose transporter Glut4, which is impaired in type II diabetes, and glucose-6-phosphate transporter (G6PT), which causes glycogen storage disease when mutated. Length = 352

>gnl|CDD|182225 PRK10077, xylE, D-xylose transporter XylE; Provisional

 Score = 42.0 bits (99), Expect = 6e-04
 Identities = 52/261 (19%), Positives = 105/261 (40%), Gaps = 58/261 (22%)

Query: 116 SILSGLPSSCFFIGCLLGGLALSTLGDSSSLGRKKLLFLSCFAMSITALAT------IFA 169
           + L G   +   IGC++GG        S+  GR+  L ++     I+AL +        +
Sbjct: 54  NSLLGFCVASALIGCIIGGALGGYC--SNRFGRRDSLKIAAVLFFISALGSAWPEFGFTS 111

Query: 170 NNIWIYSTIRFVAGFFRAPIMTSVIVLLSEMVSKRWRGQVV-------IIGFTFFS--FG 220
                     +V  F    I+  + V L+ M+S  +  ++        ++ F  F+  FG
Sbjct: 112 IG---PDNTGYVPEFVIYRIIGGIGVGLASMLSPMYIAEIAPAHIRGKLVSFNQFAIIFG 168

Query: 221 LVSLPAVAYLSRGSS---------WKMLYVWTSIPSIVCCIIIYPFISESPRWLFIHGHE 271
            + +  V Y    S          W+ ++   +IP+++  +++Y F+ E+PR+L   G +
Sbjct: 169 QLVVYFVNYFIARSGDASWLNTDGWRYMFASEAIPALLFLMLLY-FVPETPRYLMSRGKQ 227

Query: 272 AEAMAVLKRLASRSNYQSDYGLESCCLSNMPPKAKNVIPKLDLYSSLKDLFNRKWALRRL 331
            +A  +L+++                       A   +   ++  SL    + +    +L
Sbjct: 228 EQAEGILRKI------------------MGNTLATQALQ--EIKHSLD---HGRKTGGKL 264

Query: 332 LTIMALAFGIGVVYFGLLLGV 352
           L      FG+GV+  G++L V
Sbjct: 265 LM-----FGVGVIVIGVMLSV 280

Length = 479

>gnl|CDD|233167 TIGR00881, 2A0104, phosphoglycerate transporter family protein

 Score = 39.3 bits (92), Expect = 0.004
 Identities = 28/146 (19%), Positives = 60/146 (41%), Gaps = 4/146 (2%)

Query: 120 GLPSSCFFIGCLLGGLALSTLGDSSSLGRKKLLFLSCFAMSITALATIFANNIWIYSTIR 179
           GL  S F I   +    + ++ D S+   +  L +     +I  L   F+ ++W+ + + 
Sbjct: 33  GLLLSSFSIAYGISKFVMGSVSDRSN--PRVFLPIGLILCAIVNLFFGFSTSLWVMAALW 90

Query: 180 FVAGFFRAPIMTSVIVLLSEMVSKRWRGQVVIIGFTFFSFGLVSLPAVAYLSRGS--SWK 237
            + G F+          +++  S+  RG  V       + G   LP +         SW 
Sbjct: 91  ALNGIFQGMGWPPCGRTVTKWFSRSERGTWVSFWNCSHNVGGGLLPPLVLFGIAELYSWH 150

Query: 238 MLYVWTSIPSIVCCIIIYPFISESPR 263
            +++   I +I+  +I +  + +SP+
Sbjct: 151 WVFIVPGIIAIIVSLICFLLLRDSPQ 176

[Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 379

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	521
TIGR00898	505	2A0119 cation transport protein.	100.0
TIGR01299	742	synapt_SV2 synaptic vesicle protein SV2. This mode	100.0
KOG0253	528	consensus Synaptic vesicle transporter SV2 (major	100.0
TIGR00887	502	2A0109 phosphate:H+ symporter. This model represen	100.0
KOG0569	485	consensus Permease of the major facilitator superf	100.0
KOG0255	521	consensus Synaptic vesicle transporter SVOP and re	100.0
COG2271	448	UhpC Sugar phosphate permease [Carbohydrate transp	100.0
PRK10077	479	xylE D-xylose transporter XylE; Provisional	100.0
PRK10642	490	proline/glycine betaine transporter; Provisional	100.0
COG2814	394	AraJ Arabinose efflux permease [Carbohydrate trans	100.0
TIGR00903	368	2A0129 major facilitator 4 family protein. This fa	100.0
PRK09556	467	uhpT sugar phosphate antiporter; Reviewed	100.0
TIGR02332	412	HpaX 4-hydroxyphenylacetate permease. This protein	100.0
PRK11551	406	putative 3-hydroxyphenylpropionic transporter MhpT	100.0
PRK10406	432	alpha-ketoglutarate transporter; Provisional	100.0
PRK11663	434	regulatory protein UhpC; Provisional	100.0
PRK12307	426	putative sialic acid transporter; Provisional	100.0
TIGR00879	481	SP MFS transporter, sugar porter (SP) family. This	100.0
PRK03545	390	putative arabinose transporter; Provisional	100.0
PRK09952	438	shikimate transporter; Provisional	100.0
KOG0254	513	consensus Predicted transporter (major facilitator	100.0
TIGR00890	377	2A0111 Oxalate/Formate Antiporter.	100.0
PRK11273	452	glpT sn-glycerol-3-phosphate transporter; Provisio	100.0
PRK14995	495	methyl viologen resistance protein SmvA; Provision	100.0
TIGR00891	405	2A0112 putative sialic acid transporter.	100.0
TIGR00895	398	2A0115 benzoate transport.	100.0
TIGR00893	399	2A0114 d-galactonate transporter.	100.0
KOG0252	538	consensus Inorganic phosphate transporter [Inorgan	100.0
PRK09705	393	cynX putative cyanate transporter; Provisional	100.0
TIGR00894	465	2A0114euk Na(+)-dependent inorganic phosphate cotr	100.0
PRK05122	399	major facilitator superfamily transporter; Provisi	100.0
PLN00028	476	nitrate transmembrane transporter; Provisional	100.0
PRK10213	394	nepI ribonucleoside transporter; Reviewed	100.0
PRK03893	496	putative sialic acid transporter; Provisional	100.0
PRK15034	462	nitrate/nitrite transport protein NarU; Provisiona	100.0
PRK15075	434	citrate-proton symporter; Provisional	100.0
PRK10504	471	putative transporter; Provisional	100.0
PF00083	451	Sugar_tr: Sugar (and other) transporter; InterPro:	100.0
PRK15402	406	multidrug efflux system translocase MdfA; Provisio	100.0
TIGR00892	455	2A0113 monocarboxylate transporter 1.	100.0
TIGR00711	485	efflux_EmrB drug resistance transporter, EmrB/QacA	100.0
TIGR00710	385	efflux_Bcr_CflA drug resistance transporter, Bcr/C	100.0
PRK10091	382	MFS transport protein AraJ; Provisional	100.0
PRK10489	417	enterobactin exporter EntS; Provisional	99.98
PRK12382	392	putative transporter; Provisional	99.98
TIGR00900	365	2A0121 H+ Antiporter protein.	99.98
PRK03699	394	putative transporter; Provisional	99.98
PF07690	352	MFS_1: Major Facilitator Superfamily; InterPro: IP	99.98
PRK03633	381	putative MFS family transporter protein; Provision	99.98
TIGR00712	438	glpT glycerol-3-phosphate transporter. This model	99.97
PRK15403	413	multidrug efflux system protein MdtM; Provisional	99.97
TIGR00881	379	2A0104 phosphoglycerate transporter family protein	99.97
PRK10133	438	L-fucose transporter; Provisional	99.97
TIGR00899	375	2A0120 sugar efflux transporter. This family of pr	99.97
KOG2532	466	consensus Permease of the major facilitator superf	99.97
PRK09874	408	drug efflux system protein MdtG; Provisional	99.97
PRK11043	401	putative transporter; Provisional	99.97
TIGR00897	402	2A0118 polyol permease family. This family of prot	99.97
PRK11102	377	bicyclomycin/multidrug efflux system; Provisional	99.97
PRK11652	394	emrD multidrug resistance protein D; Provisional	99.97
KOG1330	493	consensus Sugar transporter/spinster transmembrane	99.97
PRK11195	393	lysophospholipid transporter LplT; Provisional	99.97
COG2223	417	NarK Nitrate/nitrite transporter [Inorganic ion tr	99.97
PRK10473	392	multidrug efflux system protein MdtL; Provisional	99.97
KOG2533	495	consensus Permease of the major facilitator superf	99.97
TIGR00885	410	fucP L-fucose:H+ symporter permease. This family d	99.97
PRK11646	400	multidrug resistance protein MdtH; Provisional	99.97
TIGR00883	394	2A0106 metabolite-proton symporter. This model rep	99.97
cd06174	352	MFS The Major Facilitator Superfamily (MFS) is a l	99.96
PRK10054	395	putative transporter; Provisional	99.96
PRK11010	491	ampG muropeptide transporter; Validated	99.96
TIGR00886	366	2A0108 nitrite extrusion protein (nitrite facilita	99.96
TIGR00902	382	2A0127 phenyl proprionate permease family protein.	99.96
KOG2504	509	consensus Monocarboxylate transporter [Carbohydrat	99.96
PRK15011	393	sugar efflux transporter B; Provisional	99.95
TIGR00896	355	CynX cyanate transporter. This family of proteins	99.95
TIGR00889	418	2A0110 nucleoside transporter. This family of prot	99.95
TIGR00792	437	gph sugar (Glycoside-Pentoside-Hexuronide) transpo	99.95
PRK11902	402	ampG muropeptide transporter; Reviewed	99.95
PRK11128	382	putative 3-phenylpropionic acid transporter; Provi	99.95
PRK08633	1146	2-acyl-glycerophospho-ethanolamine acyltransferase	99.95
TIGR00901	356	2A0125 AmpG-related permease.	99.94
PRK06814	1140	acylglycerophosphoethanolamine acyltransferase; Pr	99.94
PRK09528	420	lacY galactoside permease; Reviewed	99.94
PRK10207	489	dipeptide/tripeptide permease B; Provisional	99.94
PF05977	524	MFS_3: Transmembrane secretion effector; InterPro:	99.94
TIGR00882	396	2A0105 oligosaccharide:H+ symporter.	99.93
KOG3764	464	consensus Vesicular amine transporter [Intracellul	99.93
TIGR00806	511	rfc RFC reduced folate carrier. Proteins of the RF	99.93
COG0738	422	FucP Fucose permease [Carbohydrate transport and m	99.93
PF06609	599	TRI12: Fungal trichothecene efflux pump (TRI12); I	99.93
TIGR00924	475	yjdL_sub1_fam amino acid/peptide transporter (Pept	99.92
PTZ00207	591	hypothetical protein; Provisional	99.92
KOG2615	451	consensus Permease of the major facilitator superf	99.92
TIGR02718	390	sider_RhtX_FptX siderophore transporter, RhtX/FptX	99.91
TIGR00805	633	oat sodium-independent organic anion transporter.	99.91
PRK09584	500	tppB putative tripeptide transporter permease; Rev	99.9
TIGR01301	477	GPH_sucrose GPH family sucrose/H+ symporter. This	99.9
COG2807	395	CynX Cyanate permease [Inorganic ion transport and	99.9
PRK09669	444	putative symporter YagG; Provisional	99.89
PF11700	477	ATG22: Vacuole effluxer Atg22 like; InterPro: IPR0	99.89
PRK10429	473	melibiose:sodium symporter; Provisional	99.88
KOG4686	459	consensus Predicted sugar transporter [Carbohydrat	99.87
PRK09848	448	glucuronide transporter; Provisional	99.87
TIGR00788	468	fbt folate/biopterin transporter. The only functio	99.87
PF03825	400	Nuc_H_symport: Nucleoside H+ symporter	99.87
COG2211	467	MelB Na+/melibiose symporter and related transport	99.86
PRK11462	460	putative transporter; Provisional	99.85
PRK15462	493	dipeptide/tripeptide permease D; Provisional	99.83
PF13347	428	MFS_2: MFS/sugar transport protein	99.83
COG2270	438	Permeases of the major facilitator superfamily [Ge	99.82
PF01306	412	LacY_symp: LacY proton/sugar symporter; InterPro:	99.81
KOG2563	480	consensus Permease of the major facilitator superf	99.79
TIGR01272	310	gluP glucose/galactose transporter. Disruption of	99.79
PF03209	403	PUCC: PUCC protein; InterPro: IPR004896 This prote	99.68
KOG2325	488	consensus Predicted transporter/transmembrane prot	99.68
PF03137	539	OATP: Organic Anion Transporter Polypeptide (OATP)	99.61
COG3104	498	PTR2 Dipeptide/tripeptide permease [Amino acid tra	99.61
TIGR00880	141	2_A_01_02 Multidrug resistance protein.	99.6
PRK10642	490	proline/glycine betaine transporter; Provisional	99.6
KOG3626	735	consensus Organic anion transporter [Secondary met	99.55
KOG2816	463	consensus Predicted transporter ADD1 (major facili	99.51
PRK09528	420	lacY galactoside permease; Reviewed	99.48
TIGR01299	742	synapt_SV2 synaptic vesicle protein SV2. This mode	99.47
PF03092	433	BT1: BT1 family; InterPro: IPR004324 Members of th	99.47
TIGR00889	418	2A0110 nucleoside transporter. This family of prot	99.44
PF01770	412	Folate_carrier: Reduced folate carrier; InterPro:	99.41
PRK15011	393	sugar efflux transporter B; Provisional	99.41
TIGR00890	377	2A0111 Oxalate/Formate Antiporter.	99.39
cd06174	352	MFS The Major Facilitator Superfamily (MFS) is a l	99.36
PRK11551	406	putative 3-hydroxyphenylpropionic transporter MhpT	99.35
PRK05122	399	major facilitator superfamily transporter; Provisi	99.35
PF05631	354	DUF791: Protein of unknown function (DUF791); Inte	99.35
PRK09874	408	drug efflux system protein MdtG; Provisional	99.35
PRK10489	417	enterobactin exporter EntS; Provisional	99.35
TIGR00899	375	2A0120 sugar efflux transporter. This family of pr	99.33
PRK12382	392	putative transporter; Provisional	99.31
PRK03545	390	putative arabinose transporter; Provisional	99.3
TIGR00892	455	2A0113 monocarboxylate transporter 1.	99.3
TIGR00902	382	2A0127 phenyl proprionate permease family protein.	99.28
PRK09556	467	uhpT sugar phosphate antiporter; Reviewed	99.28
TIGR00900	365	2A0121 H+ Antiporter protein.	99.27
TIGR00879	481	SP MFS transporter, sugar porter (SP) family. This	99.27
PRK10054	395	putative transporter; Provisional	99.26
PRK11663	434	regulatory protein UhpC; Provisional	99.24
PF07690	352	MFS_1: Major Facilitator Superfamily; InterPro: IP	99.23
PRK10473	392	multidrug efflux system protein MdtL; Provisional	99.22
PRK03893	496	putative sialic acid transporter; Provisional	99.22
TIGR00893	399	2A0114 d-galactonate transporter.	99.22
PRK11195	393	lysophospholipid transporter LplT; Provisional	99.22
PRK10077	479	xylE D-xylose transporter XylE; Provisional	99.21
KOG3098	461	consensus Uncharacterized conserved protein [Funct	99.21
TIGR00897	402	2A0118 polyol permease family. This family of prot	99.21
TIGR00883	394	2A0106 metabolite-proton symporter. This model rep	99.21
PRK09952	438	shikimate transporter; Provisional	99.2
PRK10213	394	nepI ribonucleoside transporter; Reviewed	99.2
TIGR02332	412	HpaX 4-hydroxyphenylacetate permease. This protein	99.2
TIGR00891	405	2A0112 putative sialic acid transporter.	99.19
TIGR00710	385	efflux_Bcr_CflA drug resistance transporter, Bcr/C	99.19
PRK03633	381	putative MFS family transporter protein; Provision	99.19
PRK10091	382	MFS transport protein AraJ; Provisional	99.19
PRK11646	400	multidrug resistance protein MdtH; Provisional	99.18
COG2271	448	UhpC Sugar phosphate permease [Carbohydrate transp	99.18
TIGR00887	502	2A0109 phosphate:H+ symporter. This model represen	99.18
PRK09705	393	cynX putative cyanate transporter; Provisional	99.17
TIGR00792	437	gph sugar (Glycoside-Pentoside-Hexuronide) transpo	99.16
PRK12307	426	putative sialic acid transporter; Provisional	99.16
PLN00028	476	nitrate transmembrane transporter; Provisional	99.15
PRK03699	394	putative transporter; Provisional	99.15
TIGR00924	475	yjdL_sub1_fam amino acid/peptide transporter (Pept	99.15
TIGR00895	398	2A0115 benzoate transport.	99.13
COG2814	394	AraJ Arabinose efflux permease [Carbohydrate trans	99.13
TIGR00712	438	glpT glycerol-3-phosphate transporter. This model	99.13
KOG3762	618	consensus Predicted transporter [General function	99.13
PF05977	524	MFS_3: Transmembrane secretion effector; InterPro:	99.12
PRK10504	471	putative transporter; Provisional	99.11
PRK11128	382	putative 3-phenylpropionic acid transporter; Provi	99.11
PRK11273	452	glpT sn-glycerol-3-phosphate transporter; Provisio	99.11
TIGR00711	485	efflux_EmrB drug resistance transporter, EmrB/QacA	99.1
TIGR00882	396	2A0105 oligosaccharide:H+ symporter.	99.1
TIGR00880	141	2_A_01_02 Multidrug resistance protein.	99.1
PRK15462	493	dipeptide/tripeptide permease D; Provisional	99.09
PRK15403	413	multidrug efflux system protein MdtM; Provisional	99.08
TIGR00881	379	2A0104 phosphoglycerate transporter family protein	99.08
TIGR00898	505	2A0119 cation transport protein.	99.08
PF11700	477	ATG22: Vacuole effluxer Atg22 like; InterPro: IPR0	99.08
PRK11043	401	putative transporter; Provisional	99.07
PRK11010	491	ampG muropeptide transporter; Validated	99.07
PRK14995	495	methyl viologen resistance protein SmvA; Provision	99.06
PRK15402	406	multidrug efflux system translocase MdfA; Provisio	99.05
TIGR00885	410	fucP L-fucose:H+ symporter permease. This family d	99.04
PRK11102	377	bicyclomycin/multidrug efflux system; Provisional	99.04
PF06813	250	Nodulin-like: Nodulin-like; InterPro: IPR010658 Th	99.03
PRK10406	432	alpha-ketoglutarate transporter; Provisional	99.01
PRK15075	434	citrate-proton symporter; Provisional	99.0
PRK11902	402	ampG muropeptide transporter; Reviewed	99.0
KOG0569	485	consensus Permease of the major facilitator superf	99.0
PF02487	402	CLN3: CLN3 protein; InterPro: IPR003492 Batten's d	98.99
TIGR00886	366	2A0108 nitrite extrusion protein (nitrite facilita	98.99
PRK11652	394	emrD multidrug resistance protein D; Provisional	98.98
TIGR02718	390	sider_RhtX_FptX siderophore transporter, RhtX/FptX	98.97
PF01306	412	LacY_symp: LacY proton/sugar symporter; InterPro:	98.96
TIGR00903	368	2A0129 major facilitator 4 family protein. This fa	98.96
PRK09584	500	tppB putative tripeptide transporter permease; Rev	98.96
KOG1330	493	consensus Sugar transporter/spinster transmembrane	98.95
KOG2615	451	consensus Permease of the major facilitator superf	98.94
PRK15034	462	nitrate/nitrite transport protein NarU; Provisiona	98.93
PRK08633	1146	2-acyl-glycerophospho-ethanolamine acyltransferase	98.93
TIGR00901	356	2A0125 AmpG-related permease.	98.92
PRK10207	489	dipeptide/tripeptide permease B; Provisional	98.91
TIGR01272	310	gluP glucose/galactose transporter. Disruption of	98.89
TIGR00894	465	2A0114euk Na(+)-dependent inorganic phosphate cotr	98.89
COG2270	438	Permeases of the major facilitator superfamily [Ge	98.89
KOG0253	528	consensus Synaptic vesicle transporter SV2 (major	98.88
PTZ00207	591	hypothetical protein; Provisional	98.88
TIGR00769	472	AAA ADP/ATP carrier protein family. These proteins	98.88
KOG3810	433	consensus Micronutrient transporters (folate trans	98.87
PRK09848	448	glucuronide transporter; Provisional	98.86
KOG2504	509	consensus Monocarboxylate transporter [Carbohydrat	98.86
TIGR00806	511	rfc RFC reduced folate carrier. Proteins of the RF	98.85
PF03825	400	Nuc_H_symport: Nucleoside H+ symporter	98.84
PF06963	432	FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 Thi	98.84
PRK06814	1140	acylglycerophosphoethanolamine acyltransferase; Pr	98.83
KOG3764	464	consensus Vesicular amine transporter [Intracellul	98.83
PRK10133	438	L-fucose transporter; Provisional	98.83
KOG0255	521	consensus Synaptic vesicle transporter SVOP and re	98.82
TIGR01301	477	GPH_sucrose GPH family sucrose/H+ symporter. This	98.8
KOG4332	454	consensus Predicted sugar transporter [Carbohydrat	98.79
TIGR00805	633	oat sodium-independent organic anion transporter.	98.79
COG2223	417	NarK Nitrate/nitrite transporter [Inorganic ion tr	98.77
PRK10429	473	melibiose:sodium symporter; Provisional	98.76
TIGR00896	355	CynX cyanate transporter. This family of proteins	98.75
KOG4686	459	consensus Predicted sugar transporter [Carbohydrat	98.73
PF06609	599	TRI12: Fungal trichothecene efflux pump (TRI12); I	98.73
COG0477	338	ProP Permeases of the major facilitator superfamil	98.72
COG3104	498	PTR2 Dipeptide/tripeptide permease [Amino acid tra	98.67
KOG0637	498	consensus Sucrose transporter and related proteins	98.67
PRK09669	444	putative symporter YagG; Provisional	98.67
TIGR00926	654	2A1704 Peptide:H+ symporter (also transports b-lac	98.66
KOG2532	466	consensus Permease of the major facilitator superf	98.66
PF13347	428	MFS_2: MFS/sugar transport protein	98.65
KOG0252	538	consensus Inorganic phosphate transporter [Inorgan	98.61
KOG0254	513	consensus Predicted transporter (major facilitator	98.61
TIGR00939	437	2a57 Equilibrative Nucleoside Transporter (ENT).	98.53
COG2211	467	MelB Na+/melibiose symporter and related transport	98.52
PF03209	403	PUCC: PUCC protein; InterPro: IPR004896 This prote	98.42
KOG2533	495	consensus Permease of the major facilitator superf	98.41
COG2807	395	CynX Cyanate permease [Inorganic ion transport and	98.4
PF13000	544	Acatn: Acetyl-coenzyme A transporter 1; InterPro:	98.39
TIGR00788	468	fbt folate/biopterin transporter. The only functio	98.39
COG0738	422	FucP Fucose permease [Carbohydrate transport and m	98.34
KOG3574	510	consensus Acetyl-CoA transporter [Inorganic ion tr	98.34
PF06779	85	DUF1228: Protein of unknown function (DUF1228); In	98.32
PRK11462	460	putative transporter; Provisional	98.3
COG3202	509	ATP/ADP translocase [Energy production and convers	98.29
PF00083	451	Sugar_tr: Sugar (and other) transporter; InterPro:	98.29
KOG3762	618	consensus Predicted transporter [General function	98.23
PF05978	156	UNC-93: Ion channel regulatory protein UNC-93; Int	98.13
PF03219	491	TLC: TLC ATP/ADP transporter; InterPro: IPR004667	98.13
PF06813	250	Nodulin-like: Nodulin-like; InterPro: IPR010658 Th	98.08
KOG1237	571	consensus H+/oligopeptide symporter [Amino acid tr	97.83
KOG2816	463	consensus Predicted transporter ADD1 (major facili	97.81
KOG2325	488	consensus Predicted transporter/transmembrane prot	97.76
PF05631	354	DUF791: Protein of unknown function (DUF791); Inte	97.75
KOG2563	480	consensus Permease of the major facilitator superf	97.64
PF03092	433	BT1: BT1 family; InterPro: IPR004324 Members of th	97.4
TIGR00926	654	2A1704 Peptide:H+ symporter (also transports b-lac	97.37
PF12832	77	MFS_1_like: MFS_1 like family	97.37
PF05978	156	UNC-93: Ion channel regulatory protein UNC-93; Int	97.36
PF00854	372	PTR2: POT family; InterPro: IPR000109 This entry r	97.32
TIGR00769	472	AAA ADP/ATP carrier protein family. These proteins	97.29
PF02487	402	CLN3: CLN3 protein; InterPro: IPR003492 Batten's d	97.28
KOG1479	406	consensus Nucleoside transporter [Nucleotide trans	97.26
PF01733	309	Nucleoside_tran: Nucleoside transporter; InterPro:	97.09
KOG3880	409	consensus Predicted small molecule transporter inv	96.94
KOG3098	461	consensus Uncharacterized conserved protein [Funct	96.9
PF12832	77	MFS_1_like: MFS_1 like family	96.83
PF06963	432	FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 Thi	96.78
PF07672	267	MFS_Mycoplasma: Mycoplasma MFS transporter; InterP	96.76
COG0477	338	ProP Permeases of the major facilitator superfamil	96.55
PF01770	412	Folate_carrier: Reduced folate carrier; InterPro:	96.23
PRK03612	521	spermidine synthase; Provisional	96.05
KOG3097	390	consensus Predicted membrane protein [Function unk	95.74
PF00854	372	PTR2: POT family; InterPro: IPR000109 This entry r	95.46
PRK03612	521	spermidine synthase; Provisional	95.37
PF03219	491	TLC: TLC ATP/ADP transporter; InterPro: IPR004667	95.27
KOG0637	498	consensus Sucrose transporter and related proteins	94.9
PF03137	539	OATP: Organic Anion Transporter Polypeptide (OATP)	94.75
KOG3626	735	consensus Organic anion transporter [Secondary met	93.77
TIGR00939	437	2a57 Equilibrative Nucleoside Transporter (ENT).	93.56
COG3202	509	ATP/ADP translocase [Energy production and convers	92.92
KOG1479	406	consensus Nucleoside transporter [Nucleotide trans	91.54
KOG2601	503	consensus Iron transporter [Inorganic ion transpor	91.51
KOG2881	294	consensus Predicted membrane protein [Function unk	90.88
KOG3574	510	consensus Acetyl-CoA transporter [Inorganic ion tr	89.82
KOG4332	454	consensus Predicted sugar transporter [Carbohydrat	88.57
PF01733	309	Nucleoside_tran: Nucleoside transporter; InterPro:	88.42
PF06779	85	DUF1228: Protein of unknown function (DUF1228); In	87.61
KOG3880	409	consensus Predicted small molecule transporter inv	87.44
COG4262	508	Predicted spermidine synthase with an N-terminal m	86.09
KOG3810	433	consensus Micronutrient transporters (folate trans	83.38
PF07672	267	MFS_Mycoplasma: Mycoplasma MFS transporter; InterP	81.79

>TIGR00898 2A0119 cation transport protein

Probab=100.00  E-value=1.1e-46  Score=382.76  Aligned_cols=459  Identities=29%  Similarity=0.522  Sum_probs=374.8

Q ss_pred             cCCChhHHHHHHHHHHHHHHHHHHHhhhhccccCCccccc--CCcccc-------------cCCcccccc----------
Q 039541           35 ANLGLPQFIQVILISLLLIFESQQTFISVYTDEEPTWHCI--NNTTTC-------------SSSSDICTL----------   89 (521)
Q Consensus        35 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~p~~~c~--~~~~~~-------------~~~~~~c~~----------   89 (521)
                      ++++++|+.+++++++..+..++......+....|+|+|.  +.++..             +.+.+.|..          
T Consensus         1 g~~g~~q~~~~~~~~~~~~~~~~~~~~~~f~~~~p~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (505)
T TIGR00898         1 GEFGPFQRRTFLLLALPIALLAFHFVLIVFLGATPEHHCRLPDAANLSSRCELNLTLPRLPDGRPESCLRFMVDQWANPS   80 (505)
T ss_pred             CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCcccCCCCcccCChHhHhceeccCCCCCCCCCCccccccchhhhc
Confidence            4689999999999999999999999999999999999997  111100             011122321          


Q ss_pred             -------------------ccCcceecC-CCCcceeeecceeeCCccccchhhHHHHHHHHHHhhhhhhhccccCCCCch
Q 039541           90 -------------------SKSAWAWDR-PSDTTIISDWSLECAGSSILSGLPSSCFFIGCLLGGLALSTLGDSSSLGRK  149 (521)
Q Consensus        90 -------------------~~~~~~~~~-~~~~~i~~~~~~~~~~~~~~~~~~~s~~~lg~~i~~~~~g~l~dr~~~Grr  149 (521)
                                         ..+.|.|+. +..|.+.+|||++|++. .+.+++.+++.+|..++++++|+++||  +|||
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~e~~l~c~~~-~~~~~~~s~~~~g~~~g~~~~g~l~Dr--~Grr  157 (505)
T TIGR00898        81 LLGCEPLKLSDLGLAATEPCLDGWEYSYDTFSSTIVTEWDLVCEDA-WKVDLTQSCFFVGVLLGSFVFGYLSDR--FGRK  157 (505)
T ss_pred             ccccccchhcccCCCCCCCCCCCcEecCCcccccEEEEecceechH-HHHHHHHHHHHHHHHHHHHhHHHhhhh--ccch
Confidence                               123577875 45799999999997666 777999999999999999999999999  9999


Q ss_pred             HHHHHHHHHHHHHHHHHhccccHHHHHHHHHHhhccchhhHhhhhhheeeeecCcchhHHHHHHHHHHHHHHHHHHHHHH
Q 039541          150 KLLFLSCFAMSITALATIFANNIWIYSTIRFVAGFFRAPIMTSVIVLLSEMVSKRWRGQVVIIGFTFFSFGLVSLPAVAY  229 (521)
Q Consensus       150 ~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~rg~~~~~~~~~~~~G~~i~~~i~~  229 (521)
                      ++++++.++.+++.++.++++|++.+++.|++.|++.+...+...+++.|++|+++|+++.++...+..+|.++++.+++
T Consensus       158 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~  237 (505)
T TIGR00898       158 KVLLLSTLVTAVSGVLTAFSPNYTVFLVFRLLVGMGIGGIWVQAVVLNTEFLPKKQRAIVGTLIQVFFSLGLVLLPLVAY  237 (505)
T ss_pred             HHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHhhccchHHHHHHHhheecChhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999977


Q ss_pred             hhcCCchhHHHHHHHHHHHHHHhhhceeeecchhHHHhcCCHHHHHHHHHHHhhhcCCCCCCCccccccCCCCCccccCC
Q 039541          230 LSRGSSWKMLYVWTSIPSIVCCIIIYPFISESPRWLFIHGHEAEAMAVLKRLASRSNYQSDYGLESCCLSNMPPKAKNVI  309 (521)
Q Consensus       230 ~~~~~~wr~~f~~~~~~~~~~~~~~~~~~~esp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  309 (521)
                      ++.  +||+.|++.+++.++.. +..+++||+|+|+..+++.+++.+.+++..+ .|+.......    .....+++.  
T Consensus       238 ~~~--~wr~~~~~~~i~~~~~~-~~~~~~~esp~~l~~~~~~~~a~~~l~~~~~-~~~~~~~~~~----~~~~~~~~~--  307 (505)
T TIGR00898       238 FIP--DWRWLQLAVSLPTFLFF-LLSWFVPESPRWLISQGRIEEALKILQRIAK-INGKKLPAEV----LSLSLEKDL--  307 (505)
T ss_pred             Hhh--HHHHHHHHHHHHHHHHH-HHHHhcCCChHHHHHCCCHHHHHHHHHHHHH-HcCCCCCHHH----Hhhhhhhhh--
Confidence            765  49999999998888777 4557899999999999999998888888765 4443211100    000000000  


Q ss_pred             CcccccccHHHHhccHHHHHHHHHHHHHHHHHHHHHHhHHhhccCCCccHHHHHHHHHHHhHhHHHHHHHHHhhcCCchH
Q 039541          310 PKLDLYSSLKDLFNRKWALRRLLTIMALAFGIGVVYFGLLLGVGNLSFNIYLSLAFNGLLDIPAYLLTFILIERWSRKSS  389 (521)
Q Consensus       310 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~  389 (521)
                      +....+.++++++++|.++...+.....++.....+|..+.+.+..+.+......+.++..+++.++.+++.||+|||+.
T Consensus       308 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~dr~grr~~  387 (505)
T TIGR00898       308 SSSKKQYSFLDLFRTPNLRKTTLCLMMLWFTTAFSYYGLVLDLGNLGGNIYLDLFISGLVELPAKLITLLLIDRLGRRYT  387 (505)
T ss_pred             hhccCCCcHHHHhCChHHHHHHHHHHHHHHHHHHHHHHHhccccccCCChHHHHHHHHHHHHHHHHHHHHHHHHhCCHHH
Confidence            00111347889999999888888888888888888888888888888777777778888899999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHhhccccCchhhhhhhHHHHHhhhhhhhHHHHHHH
Q 039541          390 ILTFCILSGTCSAICVAIGDEQEVLQIGLELASFFSACVAFNVLLVFGTELFTTCVRNSTTSLVRQAVNLGAAFSPVLIS  469 (521)
Q Consensus       390 ~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~p~~~~  469 (521)
                      +.++.++.+++++++.+.+....+...+..++.+++.+..++..+.+..|.+|++.|+++.|+.+....+|++++|++.+
T Consensus       388 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~ig~~i~p~i~~  467 (505)
T TIGR00898       388 MAASLLLAGVALLLLLFVPVDLYFLRTALAVLGKFGITSAFQMVYLYTAELYPTVVRNLGVGVCSTMARVGSIISPFLVY  467 (505)
T ss_pred             HHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHHHHHHHHHhcccccHHHHhhhHhHHHHHHHHHHHHHhHHHH
Confidence            99999888888877776654432344555666677778888899999999999999999999999999999999999998


Q ss_pred             hhccchhHHHHHHHHHHHHHhHhhhccccCCCCCCCc
Q 039541          470 AGRQNEFLSFGVFGLVVFCFGFFVVFLPETIGVTLCD  506 (521)
Q Consensus       470 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  506 (521)
                      ....+...++.+++++.+++.+..+++||++++++++
T Consensus       468 ~~~~~~~~~~~~~~~~~~~~~~~~~~lpet~~~~l~~  504 (505)
T TIGR00898       468 LGEKWLFLPLVLFGGLALLAGILTLFLPETKGVPLPE  504 (505)
T ss_pred             HHHHHHhhHHHHHHHHHHHHHHHHHcCcCCCCCCCCC
Confidence            5555567778888888888878788889998887654

>TIGR01299 synapt_SV2 synaptic vesicle protein SV2

Probab=100.00  E-value=8.6e-44  Score=363.79  Aligned_cols=423  Identities=18%  Similarity=0.280  Sum_probs=333.2

Q ss_pred             CCChhHHHHHHHHHHHHHHHHHHHhhhhccccCCcccccCCcccccCCccccccccCcceecCCCCcceeeecceeeCCc
Q 039541           36 NLGLPQFIQVILISLLLIFESQQTFISVYTDEEPTWHCINNTTTCSSSSDICTLSKSAWAWDRPSDTTIISDWSLECAGS  115 (521)
Q Consensus        36 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~p~~~c~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~i~~~~~~~~~~~  115 (521)
                      ..++++|.++++++++.+..+++...+++.                                   +|.+.++++++..+.
T Consensus       160 ~~~~~~~~l~~i~~l~~~~~g~d~~~is~i-----------------------------------lp~i~~~~gls~~~~  204 (742)
T TIGR01299       160 GHGRFQWALFFVLGLALMADGVEVFVVGFV-----------------------------------LPSAEKDLCIPDSGK  204 (742)
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------------------------------HHHHHHHhCCCHHHH
Confidence            567899999999999999999999999999                                   999999999998666


Q ss_pred             cccchhhHHHHHHHHHHhhhhhhhccccCCCCchHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHhhccchhhHhhhhh
Q 039541          116 SILSGLPSSCFFIGCLLGGLALSTLGDSSSLGRKKLLFLSCFAMSITALATIFANNIWIYSTIRFVAGFFRAPIMTSVIV  195 (521)
Q Consensus       116 ~~~~~~~~s~~~lg~~i~~~~~g~l~dr~~~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~  195 (521)
                          +++.+++++|.+++++++|+++||  +|||+++++++++.++++++++++++++.++++|++.|++.|+..+...+
T Consensus       205 ----g~l~s~~~lG~iiG~li~G~LsDR--~GRR~~lii~lil~~i~~ll~afa~s~~~llv~R~l~G~g~g~~~p~~~~  278 (742)
T TIGR01299       205 ----GMLGLIVYLGMMVGAFFWGGLADK--LGRKQCLLICLSVNGFFAFFSSFVQGYGFFLFCRLLSGFGIGGAIPIVFS  278 (742)
T ss_pred             ----HHHHHHHHHHHHHHHHHHHHHHHH--hCcHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                999999999999999999999999  99999999999999999999999999999999999999999999999999


Q ss_pred             heeeeecCcchhHHHHHHHHHHHHHHHHHHHHHH-hhc-------------CCchhHHHHHHHHHHHHHHhhhceeeecc
Q 039541          196 LLSEMVSKRWRGQVVIIGFTFFSFGLVSLPAVAY-LSR-------------GSSWKMLYVWTSIPSIVCCIIIYPFISES  261 (521)
Q Consensus       196 ~i~~~~~~~~rg~~~~~~~~~~~~G~~i~~~i~~-~~~-------------~~~wr~~f~~~~~~~~~~~~~~~~~~~es  261 (521)
                      ++.|++|+++|++.++++..++.+|.++++.+++ ++.             ..+||+.+++.+++.++.+ +.++++|||
T Consensus       279 ~isE~~p~~~Rg~~~g~~~~~~~iG~ila~~la~~il~~~G~~~~~g~~~~~~gWR~l~~i~~lp~ll~l-l~~~~lPES  357 (742)
T TIGR01299       279 YFAEFLAQEKRGEHLSWLCMFWMIGGIYAAAMAWAIIPHYGWSFQMGSAYQFHSWRVFVIVCAFPCVFAI-GALTFMPES  357 (742)
T ss_pred             HHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhccccccccccHHHHHHHHHHHHHHHH-HHHHHcCCC
Confidence            9999999999999999999999999999988743 222             2479999999888877766 777889999


Q ss_pred             hhHHHhcCCHHHHHHHHHHHhhhcCCCCCC-Ccccc-----cc----CCCCCccccCCC--------c----ccccccHH
Q 039541          262 PRWLFIHGHEAEAMAVLKRLASRSNYQSDY-GLESC-----CL----SNMPPKAKNVIP--------K----LDLYSSLK  319 (521)
Q Consensus       262 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~-----~~----~~~~~~~~~~~~--------~----~~~~~~~~  319 (521)
                      |+|+..+++.+++.+.++++.+ .|..... +....     +.    ++....++....        .    ...+.+++
T Consensus       358 PrwL~~~gr~~eA~~iL~~i~~-~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  436 (742)
T TIGR01299       358 PRFFLENGKHDEAWMILKLIHD-TNMRAKGHPEKVFSVNHIKTIHQEDELIEIESDTGTWYQRCFVRALSEGGGIWGNFL  436 (742)
T ss_pred             HHHHHHCCCHHHHHHHHHHHhc-CCCCCcCchhHHHHHHHHHHhhhhhhhhcccccccchhhcchhhhhhhhhhHHHHHH
Confidence            9999999999999999999866 5543210 00000     00    000000000000        0    00112356


Q ss_pred             HHhccHHHHHHHHHHHHHHHHHHHHHHhHHhhccCC--------------------------------------------
Q 039541          320 DLFNRKWALRRLLTIMALAFGIGVVYFGLLLGVGNL--------------------------------------------  355 (521)
Q Consensus       320 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------------------------------------  355 (521)
                      ++++.+ +++.++...+.|++..+.||.+..+++..                                            
T Consensus       437 ~lf~~~-~~~~tl~l~~~wf~~~~~yygl~~w~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  515 (742)
T TIGR01299       437 RCFNPE-VREITIKLMGVWFTLSFGYYGLSVWFPDMIKHLQADDYAALTKNFPGDKVAHFSFNFTLENQIHRGGEYDNDK  515 (742)
T ss_pred             HHcCcc-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccchhccccccchhhhhccccccccch
Confidence            666554 56777777888888877777765443210                                            


Q ss_pred             --Cc----------------------------------------------------------------------------
Q 039541          356 --SF----------------------------------------------------------------------------  357 (521)
Q Consensus       356 --~~----------------------------------------------------------------------------  357 (521)
                        +.                                                                            
T Consensus       516 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~  595 (742)
T TIGR01299       516 FIGLKFKSVSFEDSLFEECTFDDVTSSNTFFKNCTFIDTLFENTDFEEYKFIDSEFQNCSFLHNKEGCPIDFDGDDEGAY  595 (742)
T ss_pred             hhcccccccccccccccccceeeccccchhhhccchhhhhccccchhhhhhhhhhhhhccccccCCccCccCCccchhHH
Confidence              00                                                                            


Q ss_pred             cHHHHHHHHHHHhHhHHHHHHHHHhhcCCchHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 039541          358 NIYLSLAFNGLLDIPAYLLTFILIERWSRKSSILTFCILSGTCSAICVAIGDEQEVLQIGLELASFFSACVAFNVLLVFG  437 (521)
Q Consensus       358 ~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  437 (521)
                      ..+....+.+++.+++.+++++++||+|||+++.++.++.+++++++.+....  ...++..++.+++.++.++....++
T Consensus       596 ~~~~~~~l~~l~~i~G~il~g~L~Dr~GRr~~l~~~~~lsai~~ll~~~~~s~--~~ll~~~~l~g~~~~~~~~~~~a~~  673 (742)
T TIGR01299       596 MIYFVNFLGTLAVLPGNIVSALLMDKIGRLRMLAGSMVLSCISCFFLSFGNSE--SAMIALLCLFGGLSIAAWNALDVLT  673 (742)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHccH--HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            01222345567888999999999999999999999999999988887766543  3445555667777778889999999


Q ss_pred             ccccCchhhhhhhHHHHHhhhhhhhHHHHHHHh-hccchhHHHHHHHHHHHHHhHhhhccccCCCCCC
Q 039541          438 TELFTTCVRNSTTSLVRQAVNLGAAFSPVLISA-GRQNEFLSFGVFGLVVFCFGFFVVFLPETIGVTL  504 (521)
Q Consensus       438 ~~~~~~~~r~~~~~~~~~~~~~g~~~~p~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  504 (521)
                      +|++|++.|++++|+.+....+|++++|++.+. ...+...++++++++.++++++.+++||++++.+
T Consensus       674 aEl~Pt~~Rgta~Gi~~~~~rlGaiigp~i~g~L~~~~~~~pf~i~a~~lll~~ll~~~LPET~~~~l  741 (742)
T TIGR01299       674 VELYPSDKRATAFGFLNALCKAAAVLGILIFGSFVGITKAAPILFASAALACGGLLALKLPDTRGQVL  741 (742)
T ss_pred             HHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhCCCCccccc
Confidence            999999999999999999999999999999875 3334566777888887777777777899887653

This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by pfam model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices.

>KOG0253 consensus Synaptic vesicle transporter SV2 (major facilitator superfamily) [General function prediction only]

Probab=100.00  E-value=1e-40  Score=296.84  Aligned_cols=430  Identities=19%  Similarity=0.275  Sum_probs=353.1

Q ss_pred             ChHHHHHHhhcCCChhHHHHHHHHHHHHHHHHHHHhhhhccccCCcccccCCcccccCCccccccccCcceecCCCCcce
Q 039541           25 SLDEMIEQNLANLGLPQFIQVILISLLLIFESQQTFISVYTDEEPTWHCINNTTTCSSSSDICTLSKSAWAWDRPSDTTI  104 (521)
Q Consensus        25 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~p~~~c~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~i  104 (521)
                      ..||..+..  +++++||........+.+-+.+.....+.+                                   .|..
T Consensus        62 tv~ea~~ai--gfgrfq~yl~~~ag~gwmad~m~~m~~s~i-----------------------------------~~~l  104 (528)
T KOG0253|consen   62 TVDEAMNAI--GFGRFQWYLFFVAGMGWMADAMEMMLLSLI-----------------------------------LPAL  104 (528)
T ss_pred             eehhhhhhc--CcccchhhHHHHhhhHHHHHHHHHHHHHHH-----------------------------------HHHH
Confidence            445666653  789999999999999999999999888888                                   8999


Q ss_pred             eeecceeeCCccccchhhHHHHHHHHHHhhhhhhhccccCCCCchHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHhhc
Q 039541          105 ISDWSLECAGSSILSGLPSSCFFIGCLLGGLALSTLGDSSSLGRKKLLFLSCFAMSITALATIFANNIWIYSTIRFVAGF  184 (521)
Q Consensus       105 ~~~~~~~~~~~~~~~~~~~s~~~lg~~i~~~~~g~l~dr~~~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~  184 (521)
                      .+.++.+..+.    +++......|..+++..+|..+|+  +|||+.+.+..+..++...+.++++|+..+.+.|.+.|+
T Consensus       105 ~~~w~~s~~q~----~llt~~v~~gmllga~~w~l~~d~--~grr~~f~~T~l~t~v~~~is~~spnf~~L~~f~~l~~~  178 (528)
T KOG0253|consen  105 DEVWGPSEGQA----PLLTLSVFLGMLVGAMVWGLSADT--IGRRKGFNLTFLVTGVFGVISGASPNFASLCVFRALWGF  178 (528)
T ss_pred             Hhhhchhhhhh----hHHHHHHHhhhhhhhhhhheehhh--hhcchhhhhhHHHHHHHHHhhcCCCCeehhhHHHHHHhc
Confidence            99999888776    999999999999999999999999  999999999999999999999999999999999999999


Q ss_pred             cchhhHhhhhhheeeeecCcchhHHHHHHHHHHHHHHHHHHHHHH-hhcCCchhHHHHHHHHHHHHHHhhhceeeecchh
Q 039541          185 FRAPIMTSVIVLLSEMVSKRWRGQVVIIGFTFFSFGLVSLPAVAY-LSRGSSWKMLYVWTSIPSIVCCIIIYPFISESPR  263 (521)
Q Consensus       185 ~~g~~~~~~~~~i~~~~~~~~rg~~~~~~~~~~~~G~~i~~~i~~-~~~~~~wr~~f~~~~~~~~~~~~~~~~~~~esp~  263 (521)
                      |.|+ .|...++-.|..|..+|+..+-+. ..+.+|.++...+++ ...++||||.....+.+..+.+ ...+++|||||
T Consensus       179 g~gg-~pv~~~~yle~lp~~~r~~~~V~~-~~waig~v~ea~law~vm~~~gwr~~l~~~~~pl~~~a-~f~~w~~ESpR  255 (528)
T KOG0253|consen  179 GVGG-LPVDSAIYLEFLPSSHRWLLTVMS-FFWAIGQVFEALLAWGVMSNFGWRYLLFTSSTPLMFAA-RFLVWVYESPR  255 (528)
T ss_pred             cCCC-ccHhHHHHHHhccCcCCCcchhHH-HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhHHHHHH-HHHhhcccCcc
Confidence            9998 888889999999999999988888 999999999988865 4577899999888887777777 77788999999


Q ss_pred             HHHhcCCHHHHHHHHHHHhhhcCCCCCCCccc-------cccCCCCCccccCCCcccccccHHHHhccHHHHHHHHHHHH
Q 039541          264 WLFIHGHEAEAMAVLKRLASRSNYQSDYGLES-------CCLSNMPPKAKNVIPKLDLYSSLKDLFNRKWALRRLLTIMA  336 (521)
Q Consensus       264 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~  336 (521)
                      +...+++.+++.+.++++++ .|+.+-..-..       .|.++...++...+..++...+...++. |++++..+....
T Consensus       256 f~~~~G~~~kAletL~kiAr-mNg~qlplgvl~~s~~~~~e~e~~~~~~~~~~a~ke~rg~~~nLls-p~lrkttlllw~  333 (528)
T KOG0253|consen  256 FYLAKGDDYKALETLHKIAR-MNGKQLPLGVLESSAIDRQEQEESDLDDSKSSAAKEVRGGTTNLLS-PKLRKTTLLLWR  333 (528)
T ss_pred             hhhhcCChHHHHHHHHHHHH-hcCCCCCcceeeeehhhhhhhhhhchhhhhhccccccccchHhhcC-hHHHHHHHHHHH
Confidence            99999999999999999988 88774322211       1111111111111122222345555554 668888999999


Q ss_pred             HHHHHHHHHHhHHhhccC---C------------------------CccHHHHHHHHHHHhHhHHHHHHHHHhhcCCchH
Q 039541          337 LAFGIGVVYFGLLLGVGN---L------------------------SFNIYLSLAFNGLLDIPAYLLTFILIERWSRKSS  389 (521)
Q Consensus       337 ~~~~~~~~~~~~~~~~~~---~------------------------~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~  389 (521)
                      .+++..+.||+..+...+   .                        ....+.-.++..+..++|.++.++++||+|||+.
T Consensus       334 iwfgnafsyyg~VLlttelfqsgd~c~~~~r~~p~e~e~~~~c~~s~~~dYrdllitslaefPGlLIt~~iverlGRKkT  413 (528)
T KOG0253|consen  334 IWFGNAFSYYGSVLLTTELFQSGDACPLYNRFLPTELETRANCPLSVAKDYRDLLITSLAEFPGLLITGVIVERLGRKKT  413 (528)
T ss_pred             HHHhhHHHHHHHHHHHHHHHhccCccccchhcchhHHHhhhcCCccchhHHHHHHHHHHhhCCchhHHHHHHHHhcchhH
Confidence            999999888876442211   0                        0112344567788999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHhhccccCchhhhhhhHHHHHhhhhhhhHHHHHHH
Q 039541          390 ILTFCILSGTCSAICVAIGDEQEVLQIGLELASFFSACVAFNVLLVFGTELFTTCVRNSTTSLVRQAVNLGAAFSPVLIS  469 (521)
Q Consensus       390 ~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~p~~~~  469 (521)
                      +...+++++++.+.+......  ....+..+..-++..+.+...++|..|++|+..|+++.|.+...+.+|+++.|++.-
T Consensus       414 Mal~l~~f~iflfll~~c~~r--n~~tvllf~arafisg~fqvaYvYtPEVyPTavRatgvGtcSsmaRIggI~~p~iA~  491 (528)
T KOG0253|consen  414 MALSLILFGIFLFLLTTCKTR--NAYTVLLFTARAFISGAFQVAYVYTPEVYPTAVRATGVGTCSSMARIGGIFSPVIAM  491 (528)
T ss_pred             HHHHHHHHHHHHHHHHHhcCc--chhHHHHHHHHHHHhchheEEEEecCcccchhhhhcchhhhhhHHhhhhhhhhHHHH
Confidence            999999999998887766554  245666777788889999999999999999999999999999999999999999995


Q ss_pred             hhccchhHHHHHHHHHHHHHhHhhhccc-cCCCCCC
Q 039541          470 AGRQNEFLSFGVFGLVVFCFGFFVVFLP-ETIGVTL  504 (521)
Q Consensus       470 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~  504 (521)
                      ....+...+..+.+.+++++.+...++| |+|+|..
T Consensus       492 ~~e~s~sl~i~vy~~~~ilagIavcffPiEtkGR~l  527 (528)
T KOG0253|consen  492 RAELSTSLPIFVYGALFILAGIAVCFFPIETKGRSL  527 (528)
T ss_pred             HhccceeehHHHHHHHHHHHHHHheeeeeccCCCCC
Confidence            4445567788888999999888887776 8888764

>TIGR00887 2A0109 phosphate:H+ symporter

Probab=100.00  E-value=3.6e-40  Score=333.31  Aligned_cols=419  Identities=18%  Similarity=0.227  Sum_probs=297.4

Q ss_pred             CCChhHHHHHHHHHHHHHHHHHHHhhhhccccCCcccccCCcccccCCccccccccCcceecCCCCcceeeec-----ce
Q 039541           36 NLGLPQFIQVILISLLLIFESQQTFISVYTDEEPTWHCINNTTTCSSSSDICTLSKSAWAWDRPSDTTIISDW-----SL  110 (521)
Q Consensus        36 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~p~~~c~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~i~~~~-----~~  110 (521)
                      ++++++++++.+++++.+.+++|...++..                                   .|.+..++     +.
T Consensus         9 ~~~~~~~~~~~~~~~~~~~~g~d~~~~~~~-----------------------------------~~~~~~~~~~~~~~~   53 (502)
T TIGR00887         9 PFGWQHFRAIVIAGVGFFTDSYDLFCISLV-----------------------------------TKMLGYVYYHGKGPL   53 (502)
T ss_pred             ccCHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------------------------------HHHHHHHhccCcccc
Confidence            678999999999999999999999998888                                   66655532     22


Q ss_pred             eeCCccccchhhHHHHHHHHHHhhhhhhhccccCCCCchHHHHHHHHHHHHHHHHHhcccc------HHHHHHHHHHhhc
Q 039541          111 ECAGSSILSGLPSSCFFIGCLLGGLALSTLGDSSSLGRKKLLFLSCFAMSITALATIFANN------IWIYSTIRFVAGF  184 (521)
Q Consensus       111 ~~~~~~~~~~~~~s~~~lg~~i~~~~~g~l~dr~~~Grr~~l~~~~~~~~~~~~~~~~~~~------~~~l~~~r~l~G~  184 (521)
                      +.    ...+++.+.+.++..++++++|+++||  +|||+++.+++++..++.++++++++      ++.++++|+++|+
T Consensus        54 ~~----~~~~~~~~~~~ig~~ig~~~~g~l~d~--~Grr~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~r~l~G~  127 (502)
T TIGR00887        54 PS----SVSAAVNGSASIGTLAGQLFFGWLADK--LGRKRVYGMELIIMIIATVASGLSPGSSPKSVMATLCFWRFWLGV  127 (502)
T ss_pred             hH----HHHHHHHHHHHHHHHHHHHHHHHHHHh--hccHHHHHHHHHHHHHHHHHHHHccCcccchHHHHHHHHHHHHHH
Confidence            23    344899999999999999999999999  99999999999999999999998876      7899999999999


Q ss_pred             cchhhHhhhhhheeeeecCcchhHHHHHHHHHHHHHHHHHHHHHHhh-c-----------------------CCchhHHH
Q 039541          185 FRAPIMTSVIVLLSEMVSKRWRGQVVIIGFTFFSFGLVSLPAVAYLS-R-----------------------GSSWKMLY  240 (521)
Q Consensus       185 ~~g~~~~~~~~~i~~~~~~~~rg~~~~~~~~~~~~G~~i~~~i~~~~-~-----------------------~~~wr~~f  240 (521)
                      +.|...+....++.|++|+++|++++++.+....+|.++++.++..+ .                       .++||++|
T Consensus       128 ~~g~~~~~~~~~~~e~~p~~~Rg~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~WR~~~  207 (502)
T TIGR00887       128 GIGGDYPLSAIITSEFATKKWRGAMMAAVFAMQGFGILAGAIVALIVLAGFKHSLEAAADEASCTGSCVPAVDYMWRILI  207 (502)
T ss_pred             HHhhhhHHHHHHHHHhcChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccccccccccccchhcccHHHHH
Confidence            99999999999999999999999999999999999999988874321 1                       24799999


Q ss_pred             HHHHHHHHHHHhhhceeeecchhHHHhcCCHH-HHHHHHHHHhhhcCCCCCCCccccccCCCCCccccCCCcccccccHH
Q 039541          241 VWTSIPSIVCCIIIYPFISESPRWLFIHGHEA-EAMAVLKRLASRSNYQSDYGLESCCLSNMPPKAKNVIPKLDLYSSLK  319 (521)
Q Consensus       241 ~~~~~~~~~~~~~~~~~~~esp~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  319 (521)
                      .+.++++++.. +..+++||||+|+..+++.+ ++++.+++..+ .+.. + +  ..+.++.+.   +++   ....+++
T Consensus       208 ~~~~ip~~i~~-~~~~~lpESpr~l~~~~~~~~~a~~~~~~~~~-~~~~-~-~--~~~~~~~~~---~~~---~~~~~~~  275 (502)
T TIGR00887       208 GFGAVPALLAL-YFRLTIPETPRYTADVAKDVEQAASDMSAVLQ-VKIE-A-E--PDEVEKAST---AVE---VPKASWS  275 (502)
T ss_pred             HHHHHHHHHHH-HHHHhCCCCHHHHHHhCcchHHHHHHHHHHhc-cccc-c-C--cccccchhc---ccc---chhhhHH
Confidence            98888887776 66788999999998877764 45555555522 1111 0 0  001111000   000   0112567


Q ss_pred             HHhccH---HHHHHHHHHHHHHHHHHHHHHh----HHhhccCCCccHH---------------HHHHHHHHHhHhHHHHH
Q 039541          320 DLFNRK---WALRRLLTIMALAFGIGVVYFG----LLLGVGNLSFNIY---------------LSLAFNGLLDIPAYLLT  377 (521)
Q Consensus       320 ~l~~~~---~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~---------------~~~~~~~~~~~~~~~~~  377 (521)
                      ++++++   +.++..+.....++...+.+|.    .|.++++.|.+..               ....+..++.+++.++.
T Consensus       276 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~p~i~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~g~~~~  355 (502)
T TIGR00887       276 DFFTHFFKWRHGKHLLGTAGSWFLLDIAFYGVNLNQKVILSAIGYSPPAATNNAYEELYKTAVGNLIIALAGTVPGYWVT  355 (502)
T ss_pred             HHHHHHhhhHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHcCCCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            777642   2223333333444444444444    2444444443211               01233345667788999


Q ss_pred             HHHHhhcCCchHHHHHHHHHHHHHHHHHhcCCc-hHHHHHHHHHHHH-HHHHHHHHHHHHhhccccCchhhhhhhHHHHH
Q 039541          378 FILIERWSRKSSILTFCILSGTCSAICVAIGDE-QEVLQIGLELASF-FSACVAFNVLLVFGTELFTTCVRNSTTSLVRQ  455 (521)
Q Consensus       378 g~l~dr~g~~~~~~~~~~~~~i~~~~~~~~~~~-~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~  455 (521)
                      ++++||+|||+++.++..++++++.++...... .........++.. +...+..+..+.+..|.+|++.|+++.|+.+.
T Consensus       356 ~~l~dr~gRR~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~p~~~R~~~~g~~~~  435 (502)
T TIGR00887       356 VFLVDIIGRKPIQLMGFFILTVLFFVLGFAYNHLSTHGFLAIYVLAQFFANFGPNATTFIVPGEVFPTRYRSTAHGISAA  435 (502)
T ss_pred             HHHhhhhcchhHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHhcCCCchhhhhhhccCchhHHHHHHHHHHH
Confidence            999999999999888887777776555543211 1011111111211 22223345778888999999999999999999


Q ss_pred             hhhhhhhHHHHHHHhhcc------------chhHHHHHHHHHHHHHhHhhhccccCCCCCCCcc
Q 039541          456 AVNLGAAFSPVLISAGRQ------------NEFLSFGVFGLVVFCFGFFVVFLPETIGVTLCDT  507 (521)
Q Consensus       456 ~~~~g~~~~p~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  507 (521)
                      ++.++++++|.+.+....            +....+.+++++.+++.+.++++||+++++++|.
T Consensus       436 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~i~~~~lpEt~~~~leei  499 (502)
T TIGR00887       436 SGKAGAIIGQFGFLYLAQHGDPTKGYPTGIWMGHVLEIFALFMFLGILFTLLIPETKGKSLEEL  499 (502)
T ss_pred             HhhhHHHHHHHHhhhhhccccccccccccccchHHHHHHHHHHHHHHHHheEeccCCCCCHHhh
Confidence            999999999999875321            2345677777777777666677899999876543

This model represents the phosphate uptake symporter subfamily of the major facilitator superfamily (pfam00083).

>KOG0569 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]

Probab=100.00  E-value=1e-39  Score=313.25  Aligned_cols=399  Identities=21%  Similarity=0.261  Sum_probs=302.1

Q ss_pred             eeecc--eeeCCccccchhhHHHHHHHHHHhhhhhhhccccCCCCchHHHHHHHHHHHHHHHHHhcc---ccHHHHHHHH
Q 039541          105 ISDWS--LECAGSSILSGLPSSCFFIGCLLGGLALSTLGDSSSLGRKKLLFLSCFAMSITALATIFA---NNIWIYSTIR  179 (521)
Q Consensus       105 ~~~~~--~~~~~~~~~~~~~~s~~~lg~~i~~~~~g~l~dr~~~Grr~~l~~~~~~~~~~~~~~~~~---~~~~~l~~~r  179 (521)
                      .+.+|  .++++.+.+.+.+.+++.+|.++|+++.|+++||  +|||..++++.++..++.+++.++   +++.+++++|
T Consensus        46 ~~r~g~~~s~~~~~~lwS~~vs~f~iG~~~Gs~~~~~la~~--~GRK~~l~~~~~l~~~~~~~~~~s~~~~~~e~li~GR  123 (485)
T KOG0569|consen   46 IERYGLPLSDSTLDLLWSLIVSIFFIGGMIGSFSSGLLADR--FGRKNALLLSNLLAVLAALLMGLSKSAPSFEMLILGR  123 (485)
T ss_pred             HHhcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--hcchHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHH
Confidence            34455  3333335677999999999999999999999999  999999999999988888887765   7899999999


Q ss_pred             HHhhccchhhHhhhhhheeeeecCcchhHHHHHHHHHHHHHHHHHHHHH---HhhcCCchhHHHHHHHHHHHHHHhhhce
Q 039541          180 FVAGFFRAPIMTSVIVLLSEMVSKRWRGQVVIIGFTFFSFGLVSLPAVA---YLSRGSSWKMLYVWTSIPSIVCCIIIYP  256 (521)
Q Consensus       180 ~l~G~~~g~~~~~~~~~i~~~~~~~~rg~~~~~~~~~~~~G~~i~~~i~---~~~~~~~wr~~f~~~~~~~~~~~~~~~~  256 (521)
                      ++.|+..|......+.|+.|..|++.||....+.+.+..+|.+++..++   .+.+...|++.+.+..+++++.+ +...
T Consensus       124 ~i~Gl~~gl~~~~~pmyl~E~sP~~~RG~~g~~~~~~~~~g~ll~~~~~l~~ilGt~~~W~~l~~~~~i~~~~~l-~~l~  202 (485)
T KOG0569|consen  124 LIVGLACGLSTGLVPMYLTEISPKNLRGALGTLLQIGVVIGILLGQVLGLPSLLGTEDLWPYLLAFPLIPALLQL-ALLP  202 (485)
T ss_pred             HHHHHHhHHHHHHHHHHHhhcChhhhccHHHHHHHHHHHHHHHHHHHHccHHhcCCCcchHHHHHHHHHHHHHHH-HHHh
Confidence            9999999999999999999999999999999999999999999998774   34456679999999999999998 8888


Q ss_pred             eeecchhHHHh-cCCHHHHHHHHHHHhhhcCCCCCCCccccccCCCCCccccCCCcccccccHHHHhccHHHHHHHHHHH
Q 039541          257 FISESPRWLFI-HGHEAEAMAVLKRLASRSNYQSDYGLESCCLSNMPPKAKNVIPKLDLYSSLKDLFNRKWALRRLLTIM  335 (521)
Q Consensus       257 ~~~esp~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~  335 (521)
                      ++||||+|+.. +++.++|+++++++.. .++.+.      +.++...+.++++.+.+...+++++++++.+++...+.+
T Consensus       203 ~~PESPk~Ll~~k~~~~~A~~sl~~y~G-~~~~~~------~~e~~~~e~~~~~~~~~~~~sl~~~~~~~~lR~~~~i~~  275 (485)
T KOG0569|consen  203 FLPESPKYLLIKKGDEEEARKALKFYRG-KEDVEA------EIEEMLREIEEEELEKKKQISLRQLLKNPTLRRPLLIGI  275 (485)
T ss_pred             cCCCCcchHHHHcCCHHHHHHHHHHHhC-CCcchh------HHHHHHHHHHHhccccccCCcHHHHhcCcchhHHHHHHH
Confidence            99999999998 8999999999999833 222111      111111111111111123458999999999998877776


Q ss_pred             HHHHHH-----HHHHHhHHhhccCCCccH---HHHHHHHHHHhHhHHHHHHHHHhhcCCchHHHHHHHHHHHHHHHHHhc
Q 039541          336 ALAFGI-----GVVYFGLLLGVGNLSFNI---YLSLAFNGLLDIPAYLLTFILIERWSRKSSILTFCILSGTCSAICVAI  407 (521)
Q Consensus       336 ~~~~~~-----~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~i~~~~~~~~  407 (521)
                      ...++.     +...++...++.+.|.+.   .......++..++.++++.+++||+|||++++.+..++.+..+++...
T Consensus       276 ~v~~~qq~sGi~ai~~Yst~i~~~aG~~~~~a~~an~~~g~v~~~~t~~~~~lid~~gRRpLll~~~~~~~~~~~~~~~~  355 (485)
T KOG0569|consen  276 VVSFAQQFSGINAIFFYSTSIFKTAGFTPEEAQYANLGIGIVNLLSTLVSPFLIDRLGRRPLLLISLSLMAVALLLMSIA  355 (485)
T ss_pred             HHHHHHHhcCcceeHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHH
Confidence            666644     334444455566656543   445566778899999999999999999999999999988887776654


Q ss_pred             CCch----HH---HHHHHHHHHHHHHHHH-HHHHHHhhccccCchhhhhhhHHHHHhhhhhhhHHHHHHHhh--ccchhH
Q 039541          408 GDEQ----EV---LQIGLELASFFSACVA-FNVLLVFGTELFTTCVRNSTTSLVRQAVNLGAAFSPVLISAG--RQNEFL  477 (521)
Q Consensus       408 ~~~~----~~---~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~p~~~~~~--~~~~~~  477 (521)
                      ....    .|   ..+++.+++.++++.+ .|+.+.+.+|++|++.|+.+.++....+.+..++-.+.....  ..+. .
T Consensus       356 ~~l~~~~~~~~~y~~i~~~~~~~~~f~~G~gpi~~fi~aELf~~~~R~aa~s~~~~~~w~~~fiv~~~fp~l~~~~g~-~  434 (485)
T KOG0569|consen  356 LFLSNSFGSWLSYLCIAAIFLFIISFAIGPGPIPWFIGAELFPQSARSAAQSVATAVNWLSNFIVGFAFPPLQNVIGP-Y  434 (485)
T ss_pred             HHHHHHhhhHHHHHHHHHHHHHHHhhhcCCCchhHHHHHHhCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-h
Confidence            2211    11   2233344444444433 579999999999999999999999999988887666555431  1223 6


Q ss_pred             HHHHHHHHHHHHh-HhhhccccCCCCCCCcchHhhhcc
Q 039541          478 SFGVFGLVVFCFG-FFVVFLPETIGVTLCDTLDQQEYF  514 (521)
Q Consensus       478 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~  514 (521)
                      .|+.+.+.+++.. .++.++||||+|+..|+.++.+++
T Consensus       435 ~filF~i~~~~~~i~~~~~lPETkgr~~~eI~~~~~~~  472 (485)
T KOG0569|consen  435 VFILFVIPLAIFLIYLYRYLPETKGRTPYEIIEELEKR  472 (485)
T ss_pred             hhHHHHHHHHHHHHHHHHhCcccCCCCHHHHHHHHHhC
Confidence            6666666665554 457889999999988888776655

>KOG0255 consensus Synaptic vesicle transporter SVOP and related transporters (major facilitator superfamily) [General function prediction only]

Probab=100.00  E-value=1.3e-37  Score=316.67  Aligned_cols=475  Identities=30%  Similarity=0.500  Sum_probs=374.0

Q ss_pred             HHHHHHhhcCCChhHHHHHHHHHHHHHHHHHHHhhhhccccCCcccc--------c-CCcccccCCccc-----------
Q 039541           27 DEMIEQNLANLGLPQFIQVILISLLLIFESQQTFISVYTDEEPTWHC--------I-NNTTTCSSSSDI-----------   86 (521)
Q Consensus        27 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~p~~~c--------~-~~~~~~~~~~~~-----------   86 (521)
                      ++..+ ..++.+++|......................+....|+++|        . ++|..+......           
T Consensus         4 ~~~~~-~~~~~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~   82 (521)
T KOG0255|consen    4 DEILS-SVGDFGRYQKLLLLLLGLPSIFSALHSFAQIFLAFVPDHHCTEWGCLNDAEDSCLVYWDPTLDPANPLNWPSWK   82 (521)
T ss_pred             HHHHH-HhcCCcHHHHHHHHHHHHHHhHHHHHHHHHHhhccCCCchhhhhhcccCCcccceecccCccCcCCcccccccc
Confidence            34444 36788999999999999888888877777777778887666        2 566654322221           


Q ss_pred             -----cccccCcceecCCC-CcceeeecceeeCCccccchhhHHHHHHHHHHhhhhhhhccccCCCCchHHHHHHHHHHH
Q 039541           87 -----CTLSKSAWAWDRPS-DTTIISDWSLECAGSSILSGLPSSCFFIGCLLGGLALSTLGDSSSLGRKKLLFLSCFAMS  160 (521)
Q Consensus        87 -----c~~~~~~~~~~~~~-~~~i~~~~~~~~~~~~~~~~~~~s~~~lg~~i~~~~~g~l~dr~~~Grr~~l~~~~~~~~  160 (521)
                           +....+.|.++.+. ...+..++++-+++. ....+..+++++|.++|++++|+++||  +|||++++.++++..
T Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~c~~~-~~~~~~~s~~~~G~~vG~~i~g~lsD~--~GRk~~~~~~~~~~~  159 (521)
T KOG0255|consen   83 KWLLVIVICLDGWVYDYGSSVYSIVSEWNLVCDSS-TLVALGQSLFFLGVLVGSLIFGPLSDR--FGRKPVLLVSLLLFI  159 (521)
T ss_pred             ccccccccccceeEecCCCCcccccchhceeeCcH-hHHHHHHHHHHHHHHHHHhhheehHhh--cccHHHHHHHHHHHH
Confidence                 22345677777543 444555566666665 777999999999999999999999999  999999999999999


Q ss_pred             HHHHHHhccccHHHHHHHHHHhhccchhhHhhhhhheeeeecCcchhHHHHHHHHHHHHHHHHHHHH-HHhhcCCchhHH
Q 039541          161 ITALATIFANNIWIYSTIRFVAGFFRAPIMTSVIVLLSEMVSKRWRGQVVIIGFTFFSFGLVSLPAV-AYLSRGSSWKML  239 (521)
Q Consensus       161 ~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~rg~~~~~~~~~~~~G~~i~~~i-~~~~~~~~wr~~  239 (521)
                      ++.++.++++|++.+++.|+++|++.++.......++.|++++++|+.+..+ ......|..+++.+ +++..  +||+.
T Consensus       160 i~~~~~a~a~~~~~~~~~Rfl~G~~~~~~~~~~~~~~~E~~~~~~R~~~~~~-~~~~~~~~~~~~~~~a~~~~--~Wr~~  236 (521)
T KOG0255|consen  160 IFGILTAFAPNYWMFLIFRFLSGFFGSGPLTVGFGLVAEIVSPKQRGLALTL-GGFFFVGGLMLPAGAAYITR--DWRWL  236 (521)
T ss_pred             HHHHHHHHhCcHHHHHHHHHHHHhhccchhHHhHhhheeecCcchhhHHHHH-HHHHHHHHHHHHHHHHHHHh--hHHHH
Confidence            9999999999999999999999999999999999999999999999999999 55555555555554 77777  99999


Q ss_pred             HHHHHHHHHHHHhhhceeeecchhHHHhcCCHHHHHHHHHHHhhhcCCCCCCCccccccCCCCCccccCCCcccccccHH
Q 039541          240 YVWTSIPSIVCCIIIYPFISESPRWLFIHGHEAEAMAVLKRLASRSNYQSDYGLESCCLSNMPPKAKNVIPKLDLYSSLK  319 (521)
Q Consensus       240 f~~~~~~~~~~~~~~~~~~~esp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  319 (521)
                      +++..++.++.+ +.+++.||+|+|+..+++.+++.+.++++++ .|+.........+...  ..+.......+.+..+.
T Consensus       237 ~~~~~~~~~~~~-~~~~l~~Es~rwl~~~g~~~~a~~~l~~~a~-~n~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~  312 (521)
T KOG0255|consen  237 FWIISIPSGLFL-LLWFLPPESPRWLLSKGRIDEAIKILKKIAK-LNGRKLSVKELLRLEL--LLRPLKLLFTEPKISFL  312 (521)
T ss_pred             HHHHHHHHHHHH-HHHHccCcChHHHHHcCchHHHHHHHHHHHh-hcCCCCCcHHHHHHHH--HhhHhhhhccCCCCchh
Confidence            999999999887 4467777999999999999999999999876 5532222211111111  00011111111224688


Q ss_pred             HHhccHHHHHHHHHHHHHHHHHHHHHHhHHhhccCCCccHHHHHHHHHHHhHhHHHHHHHHHhhcCCchHHHHHHHHHHH
Q 039541          320 DLFNRKWALRRLLTIMALAFGIGVVYFGLLLGVGNLSFNIYLSLAFNGLLDIPAYLLTFILIERWSRKSSILTFCILSGT  399 (521)
Q Consensus       320 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~i  399 (521)
                      ++++.|++++.++...+.++.....+|.+.+.....|.+.+......+....++....+...|++|||.....+..+..+
T Consensus       313 ~l~~~~~l~~~~~~~~~~~~~~~~~y~gl~~~~~~lg~~~~~~~~~~~~~~~p~~~~~~~~~~~~gR~~~~~~~~~~~~~  392 (521)
T KOG0255|consen  313 DLFRTPRLRYRTLYLLFIWFVFSLVYYGLSLNVSGLGGNIYLNFTLSGLVELPAYFRNGLLLPEFGRRPPLFLSLFLAGI  392 (521)
T ss_pred             hhhcCHHHHHHHHHHHHHHHHHhHHHHhhhhhhhhcCchHHHHHHHHHHHHhhHHHHHHHHHHHhCcHHHHHHHHHHHHH
Confidence            99999988999999999999999999999999999999998888888888889999999999999999999999999999


Q ss_pred             HHHHHHhcCCchH-HHHHHHHHHHHHHHHHHHHHHHHhhccccCchhhhhhhHHHHHhhhhhhhHHHHHHHhhc-cchhH
Q 039541          400 CSAICVAIGDEQE-VLQIGLELASFFSACVAFNVLLVFGTELFTTCVRNSTTSLVRQAVNLGAAFSPVLISAGR-QNEFL  477 (521)
Q Consensus       400 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~p~~~~~~~-~~~~~  477 (521)
                      +++...+...... +...+...+..++.+..+...+.+..|++|+..|..+.+.......+|++++|.+..... .....
T Consensus       393 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~el~pt~~r~~~~~~~~~~~~~~~i~ap~~~~~~~~~~~~~  472 (521)
T KOG0255|consen  393 GLLLFGWLPDDLGGWLHWILPLLGKFFIGSAFNLIFLYSAELIPTVVRNTAVGAISAAARLGSILAPLFPLLLRQMFPLL  472 (521)
T ss_pred             HHHHHHHhhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccc
Confidence            9999888876643 256677777778888888888999999999999999999999999999999999986432 23333


Q ss_pred             HHHHHHHHHHHHhHh-hhccccCCCCCCCcchHhhh
Q 039541          478 SFGVFGLVVFCFGFF-VVFLPETIGVTLCDTLDQQE  512 (521)
Q Consensus       478 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~  512 (521)
                      .+.+++....+..++ ..++||++++.+.+..++.+
T Consensus       473 ~~~~~~~~~~l~~~~~~~~lpet~~~~l~~t~~~~~  508 (521)
T KOG0255|consen  473 GLILFGWLALLLGLLSLLLLPETKGKPLPGTLLDAE  508 (521)
T ss_pred             hHHHHHHHHHHHHHHHHhcCcccCCCCCchhHHHHH
Confidence            434445555555544 48899999999887776666

>COG2271 UhpC Sugar phosphate permease [Carbohydrate transport and metabolism]

Probab=100.00  E-value=9.4e-38  Score=285.89  Aligned_cols=398  Identities=14%  Similarity=0.118  Sum_probs=308.6

Q ss_pred             CCChhHHHHHHHHHHHHHHHHHHHhhhhccccCCcccccCCcccccCCccccccccCcceecCCCCcceeeecceeeCCc
Q 039541           36 NLGLPQFIQVILISLLLIFESQQTFISVYTDEEPTWHCINNTTTCSSSSDICTLSKSAWAWDRPSDTTIISDWSLECAGS  115 (521)
Q Consensus        36 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~p~~~c~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~i~~~~~~~~~~~  115 (521)
                      .+.++|+.+++.+++++....+.+...+++                                   .|.+.+|.++|.+|.
T Consensus        22 ~y~~~r~qif~~~fiGYa~fYl~RknF~~a-----------------------------------~p~l~e~~~lsk~~l   66 (448)
T COG2271          22 TYKRWRIQIFLSIFIGYAAFYLTRKNFNLA-----------------------------------MPALIEDGGLSKTQL   66 (448)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhHhhc-----------------------------------cHHHHHhcCCCHHHH
Confidence            478899999999999999999999999999                                   999999999999777


Q ss_pred             cccchhhHHHHHHHHHHhhhhhhhccccCCCCchHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHhhccchhhHhhhhh
Q 039541          116 SILSGLPSSCFFIGCLLGGLALSTLGDSSSLGRKKLLFLSCFAMSITALATIFANNIWIYSTIRFVAGFFRAPIMTSVIV  195 (521)
Q Consensus       116 ~~~~~~~~s~~~lg~~i~~~~~g~l~dr~~~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~  195 (521)
                          |++.+++++.+.++-.+.|.++||  .+.|+.+.+++++.++.+++++++++.+.+.+..+++|+.+|..+|.+..
T Consensus        67 ----G~i~s~f~i~YG~sKf~~G~~sDr--~npr~fm~~gLilsai~nil~Gfs~s~~~~~~l~~lng~fQg~Gwpp~~~  140 (448)
T COG2271          67 ----GILGSAFSITYGVSKFVMGVLSDR--SNPRYFMAFGLILSAIVNILFGFSPSLFLFAVLWVLNGWFQGMGWPPCAR  140 (448)
T ss_pred             ----HHHHHHHHHHHHHHHHHhhhhccc--CCCceeehHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCCcHHHH
Confidence                999999999999999999999999  99999999999999999999999999999999999999999999999999


Q ss_pred             heeeeecCcchhHHHHHHHHHHHHHHHHHHHH---HHhhcCCchhHHHHHHHHHHHHHHhhhceeeecchhHHHhcCCHH
Q 039541          196 LLSEMVSKRWRGQVVIIGFTFFSFGLVSLPAV---AYLSRGSSWKMLYVWTSIPSIVCCIIIYPFISESPRWLFIHGHEA  272 (521)
Q Consensus       196 ~i~~~~~~~~rg~~~~~~~~~~~~G~~i~~~i---~~~~~~~~wr~~f~~~~~~~~~~~~~~~~~~~esp~~~~~~~~~~  272 (521)
                      .++.|+|+++||+..++++++.++|..+.|++   +.+..+.+||..|++.++++++..+++++.++|+|+..-... .|
T Consensus       141 ~i~~Wfsr~eRG~~~siWn~shNiGGal~~~~~~la~~~~~~~w~~~f~~pgiiaiival~~~~~~rd~Pqs~GLP~-ie  219 (448)
T COG2271         141 TITHWFSRKERGTWWSIWNTSHNIGGALAPLVALLAFFAFHGGWRAAFYFPGIIAIIVALILLFLLRDRPQSEGLPP-IE  219 (448)
T ss_pred             HHHHHcCccccCceEEEehhhhhcccchHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHhCCCccccCCCC-HH
Confidence            99999999999999999999999998877655   566777899999999999999999888888999985321111 11


Q ss_pred             HHHHHHHHHhhhcCCCCCCCccccccCCCCCccccCCCccccc-ccHHHHhccHHHHHHHHHHHHHHHHHH-HHHHhHHh
Q 039541          273 EAMAVLKRLASRSNYQSDYGLESCCLSNMPPKAKNVIPKLDLY-SSLKDLFNRKWALRRLLTIMALAFGIG-VVYFGLLL  350 (521)
Q Consensus       273 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~  350 (521)
                      +-          .++.         .+.. .++ ++.+..+.+ .-++-+++||..|...+...+.+..=. +..+...+
T Consensus       220 ~~----------~~d~---------~e~~-~~~-~~~~~ls~~~i~~~YVL~Nk~iW~la~a~vfvYivR~gi~dW~p~Y  278 (448)
T COG2271         220 EY----------RGDP---------LEIY-EEE-KENEGLTAWQIFVKYVLKNKLIWLLALANVFVYVVRYGINDWGPLY  278 (448)
T ss_pred             Hh----------hcCc---------hhhh-hhh-ccCCCccHHHHHHHHHHcChHHHHHHHHHHHHHHHHHHHhhhHHHH
Confidence            10          0000         0000 000 000001111 134567889988777666666666543 33344444


Q ss_pred             hccCCCccH---HHHHHHHHHHhHhHHHHHHHHHhhc--CCchHHHHHHH-HHHHHHHHHHhcCCchHHHHHHHHHHHHH
Q 039541          351 GVGNLSFNI---YLSLAFNGLLDIPAYLLTFILIERW--SRKSSILTFCI-LSGTCSAICVAIGDEQEVLQIGLELASFF  424 (521)
Q Consensus       351 ~~~~~~~~~---~~~~~~~~~~~~~~~~~~g~l~dr~--g~~~~~~~~~~-~~~i~~~~~~~~~~~~~~~~~~~~~~~~~  424 (521)
                      ..+..+.+.   .....+.-.++++|+++.||++||+  |||..+.+.+. ...++.+.+...+..+.+...+++++.|+
T Consensus       279 L~e~k~~s~~~a~~a~~lfE~agl~G~Ll~GwlSDklfkgrR~p~~~i~~~~i~~~~~~~w~~~~~~~~l~~~~l~~iGf  358 (448)
T COG2271         279 LSEVKGFSLVKANWAISLFEVAGLPGTLLAGWLSDKLFKGRRGPMALIFMLLITASLVLYWLAPNGSYLLDAILLFIIGF  358 (448)
T ss_pred             HHHhcCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHH
Confidence            445555553   4445666788999999999999996  66765555444 44444444444444444667778888888


Q ss_pred             HHHHHHHHHHHhhccccCchhhhhhhHHHHHhhhh-hhhHHHHHHHhh--ccchhHHHHHHHHHHHHHhHhhhcc
Q 039541          425 SACVAFNVLLVFGTELFTTCVRNSTTSLVRQAVNL-GAAFSPVLISAG--RQNEFLSFGVFGLVVFCFGFFVVFL  496 (521)
Q Consensus       425 ~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~-g~~~~p~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~  496 (521)
                      ...+..-+.-..+.|..|++..|++.|+...++++ |+..+....++.  ..++...|.++.+.++++.++....
T Consensus       359 ~IyGPqmLiGl~a~e~~pK~AaGtA~Gf~Glf~Yl~Ga~~a~~~~g~i~d~~gW~g~Fi~~~~~a~l~~lll~~~  433 (448)
T COG2271         359 LIYGPQMLIGLAAAEFVPKKAAGTATGFVGLFAYLIGAALAGLPLGYIADTWGWDGGFIVLSIAALLAILLLLPV  433 (448)
T ss_pred             HHhhHHHHHHHHHhccccHhhccchhchhhhHHHHhhHHhcCCcceeeEecCCCcchHHHHHHHHHHHHHHHHHH
Confidence            88888888888899999999999999999999999 888888877763  3467777887777777766654433

>PRK10077 xylE D-xylose transporter XylE; Provisional

Probab=100.00  E-value=1.2e-36  Score=307.53  Aligned_cols=417  Identities=17%  Similarity=0.231  Sum_probs=288.4

Q ss_pred             CChhHHHHHHHHHHHHHHHHHHHhhhhccccCCcccccCCcccccCCccccccccCcceecCCCCcceeeec--------
Q 039541           37 LGLPQFIQVILISLLLIFESQQTFISVYTDEEPTWHCINNTTTCSSSSDICTLSKSAWAWDRPSDTTIISDW--------  108 (521)
Q Consensus        37 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~p~~~c~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~i~~~~--------  108 (521)
                      ..+++++.++++.++.+.++++...++..                                   .|.+++++        
T Consensus         6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------------------------------~~~~~~~~~~~~~~~~   50 (479)
T PRK10077          6 NSSYIFSITLVATLGGLLFGYDTAVISGT-----------------------------------VESLNTVFVAPQNLSE   50 (479)
T ss_pred             cchHHHHHHHHHHHHHHhcCcccceehHh-----------------------------------HHHHHHHhcccccccc
Confidence            45677888888889999999999988887                                   56666655        


Q ss_pred             ceeeCCccccchhhHHHHHHHHHHhhhhhhhccccCCCCchHHHHHHHHHHHHHHHHHhcc------------ccHHHHH
Q 039541          109 SLECAGSSILSGLPSSCFFIGCLLGGLALSTLGDSSSLGRKKLLFLSCFAMSITALATIFA------------NNIWIYS  176 (521)
Q Consensus       109 ~~~~~~~~~~~~~~~s~~~lg~~i~~~~~g~l~dr~~~Grr~~l~~~~~~~~~~~~~~~~~------------~~~~~l~  176 (521)
                      +++.++.    +++.+++.++..++++++|+++||  +|||++++++.++++++.++++++            ++++.++
T Consensus        51 ~~~~~~~----~~~~s~~~ig~~~~~~~~G~l~dr--~Grr~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~  124 (479)
T PRK10077         51 SAANSLL----GFCVASALIGCIIGGALGGYCSNR--FGRRDSLKIAAVLFFISALGSAWPEFGFTSIGPDNTGYVPEFV  124 (479)
T ss_pred             cCChhHH----HHHHHHHHHHHHHHHHHHHHHHHH--hccHHHHHHHHHHHHHHHHHHHhhccccccccccchhHHHHHH
Confidence            7777555    999999999999999999999999  999999999999999998888763            2356788


Q ss_pred             HHHHHhhccchhhHhhhhhheeeeecCcchhHHHHHHHHHHHHHHHHHHHHHHhh---------cCCchhHHHHHHHHHH
Q 039541          177 TIRFVAGFFRAPIMTSVIVLLSEMVSKRWRGQVVIIGFTFFSFGLVSLPAVAYLS---------RGSSWKMLYVWTSIPS  247 (521)
Q Consensus       177 ~~r~l~G~~~g~~~~~~~~~i~~~~~~~~rg~~~~~~~~~~~~G~~i~~~i~~~~---------~~~~wr~~f~~~~~~~  247 (521)
                      ++|+++|++.|...+...++++|++|+++|++++++.+.+..+|.++++.++...         ...+||++|++.+++.
T Consensus       125 ~~R~l~G~~~g~~~~~~~~~i~e~~~~~~rg~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~gWr~~f~~~~~~~  204 (479)
T PRK10077        125 IYRIIGGIGVGLASMLSPMYIAEIAPAHIRGKLVSFNQFAIIFGQLVVYFVNYFIARSGDASWLNTDGWRYMFASEAIPA  204 (479)
T ss_pred             HHHHHHhhhHhHHhhHHHHHHHhhCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHhccCcccccccCChHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999999999988775422         3579999999988888


Q ss_pred             HHHHhhhceeeecchhHHHhcCCHHHHHHHHHHHhhhcCCCCCCCccccccCCCCCccccCCCcccccccHHHHhccHHH
Q 039541          248 IVCCIIIYPFISESPRWLFIHGHEAEAMAVLKRLASRSNYQSDYGLESCCLSNMPPKAKNVIPKLDLYSSLKDLFNRKWA  327 (521)
Q Consensus       248 ~~~~~~~~~~~~esp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~  327 (521)
                      ++.. +..+++||+|+++..+++.+++++..++..+ .+..      ....++.....++..      ...+..+...  
T Consensus       205 ~~~~-~~~~~l~~s~~~l~~~~~~~~~~~~~~~~~~-~~~~------~~~~~~~~~~~~~~~------~~~~~~~~~~--  268 (479)
T PRK10077        205 LLFL-MLLYFVPETPRYLMSRGKQEQAEGILRKIMG-NTLA------TQALQEIKHSLDHGR------KTGGKLLMFG--  268 (479)
T ss_pred             HHHH-HHHHcCCCCcHHHHHcCCHHHHHHHHHHHcC-ChhH------HHHHHHHHHHHHHhh------hhhhhhcchh--
Confidence            7776 5567789999998777777776655555421 1000      000000000000000      0000111100  


Q ss_pred             HHHHHHHHHH-HH----HHHHHHHhHHhhccCCCcc---HHHHHHHHHHHhHhHHHHHHHHHhhcCCchHHHHHHHHHHH
Q 039541          328 LRRLLTIMAL-AF----GIGVVYFGLLLGVGNLSFN---IYLSLAFNGLLDIPAYLLTFILIERWSRKSSILTFCILSGT  399 (521)
Q Consensus       328 ~~~~~~~~~~-~~----~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~i  399 (521)
                      .......... .+    ......|..|.+.++.+.+   ........++..+++.++.++++||+|||+++..+..++++
T Consensus       269 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~i~~~~g~~~~~~~~~~~~~~~~~~i~~~~~g~l~dr~g~r~~~i~~~~~~~v  348 (479)
T PRK10077        269 VGVIVIGVMLSVFQQFVGINVVLYYAPEIFKTLGASTDIALLQTIIVGVINLTFTVLAIMTVDKFGRKPLQIIGALGMAI  348 (479)
T ss_pred             HHHHHHHHHHHHHHHHhChhHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHhHHHHHH
Confidence            0011111111 11    1122334456655555543   23344456677888999999999999999999999988888


Q ss_pred             HHHHHHhcCC--chHHHHHHHHHHHHHHHHHH-HHHHHHhhccccCchhhhhhhHHHHHhhhhhhhHHHHHHHhh-----
Q 039541          400 CSAICVAIGD--EQEVLQIGLELASFFSACVA-FNVLLVFGTELFTTCVRNSTTSLVRQAVNLGAAFSPVLISAG-----  471 (521)
Q Consensus       400 ~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~p~~~~~~-----  471 (521)
                      +.+.+.....  ..........++.+++.+.. .+..+.++.|.+|++.|+++.|+.+....+|.++++.+.+..     
T Consensus       349 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~g~~~~~~~~p~~~~~~~  428 (479)
T PRK10077        349 GMFSLGTAFYTQAPGIVALLSMLFYVAAFAMSWGPVCWVLLSEIFPNAIRGKALAIAVAAQWIANYFVSWTFPMMDKNSW  428 (479)
T ss_pred             HHHHHHHHHhcCcccHHHHHHHHHHHHHHhccccchhHHHhHhhCChhHHHHHHHHHHHHHHHHHHHHHHHhHHHHhccc
Confidence            8776654321  11122223333444443332 367789999999999999999999999999998886665421     


Q ss_pred             ---ccchhHHHHHHHHHHHHHhHh-hhccccCCCCCCCcchHh
Q 039541          472 ---RQNEFLSFGVFGLVVFCFGFF-VVFLPETIGVTLCDTLDQ  510 (521)
Q Consensus       472 ---~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~  510 (521)
                         ..+....|.+.++..+++.++ +++.||+++++.+|..++
T Consensus       429 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~  471 (479)
T PRK10077        429 LVAHFHNGFSYWIYGCMGVLAALFMWKFVPETKGKTLEEMEAL  471 (479)
T ss_pred             hhhhccCccHHHHHHHHHHHHHHHHHhccccCCCCCHHHHHHH
Confidence               233455666666665555544 456688888776554433

>PRK10642 proline/glycine betaine transporter; Provisional

Probab=100.00  E-value=4e-36  Score=302.70  Aligned_cols=392  Identities=17%  Similarity=0.088  Sum_probs=267.8

Q ss_pred             HHHHHHHHHHHHHHHHHHhhhhccccCCcccccCCcccccCCccccccccCcceecCCCCcceeeecceeeCCccccch-
Q 039541           42 FIQVILISLLLIFESQQTFISVYTDEEPTWHCINNTTTCSSSSDICTLSKSAWAWDRPSDTTIISDWSLECAGSSILSG-  120 (521)
Q Consensus        42 ~~~~~~~~l~~~~~~~~~~~~~~~~~~p~~~c~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~-  120 (521)
                      +..+...+++.+++++|...+++.                                   .|.+.++++.+.++.....+ 
T Consensus        15 ~~~~~~~~~g~~~~~~d~~~~~~~-----------------------------------~~~i~~~~~~~~~~~~~~~~~   59 (490)
T PRK10642         15 RKAITAASLGNAMEWFDFGVYGFV-----------------------------------AYALGKVFFPGADPSVQMIAA   59 (490)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH-----------------------------------HHHHHHhhCCCCCcHHHHHHH
Confidence            456677789999999999999999                                   89999998765543201111 


Q ss_pred             h-hHHHHHHHHHHhhhhhhhccccCCCCchHHHHHHHHHHHHHHHHHhccccHHH--------HHHHHHHhhccchhhHh
Q 039541          121 L-PSSCFFIGCLLGGLALSTLGDSSSLGRKKLLFLSCFAMSITALATIFANNIWI--------YSTIRFVAGFFRAPIMT  191 (521)
Q Consensus       121 ~-~~s~~~lg~~i~~~~~g~l~dr~~~Grr~~l~~~~~~~~~~~~~~~~~~~~~~--------l~~~r~l~G~~~g~~~~  191 (521)
                      + +.++.+++..++++++|+++||  +|||+++.+++++++++++++++++|++.        +++.|+++|++.|+.++
T Consensus        60 ~~~~~~~~l~~~ig~~~~G~l~Dr--~Grr~~l~~~~~l~~i~~~~~a~~~~~~~~g~~a~~~l~~~R~l~G~g~g~~~~  137 (490)
T PRK10642         60 LATFSVPFLIRPLGGLFFGMLGDK--YGRQKILAITIVIMSISTFCIGLIPSYATIGIWAPILLLLCKMAQGFSVGGEYT  137 (490)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHh--cccHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhHhHhhHH
Confidence            1 2578889999999999999999  99999999999999999999999999874        89999999999999999


Q ss_pred             hhhhheeeeecCcchhHHHHHHHHHHHHHHHHHHHHHHh---------hcCCchhHHHHHHHHHHHHHHhhhceeeecch
Q 039541          192 SVIVLLSEMVSKRWRGQVVIIGFTFFSFGLVSLPAVAYL---------SRGSSWKMLYVWTSIPSIVCCIIIYPFISESP  262 (521)
Q Consensus       192 ~~~~~i~~~~~~~~rg~~~~~~~~~~~~G~~i~~~i~~~---------~~~~~wr~~f~~~~~~~~~~~~~~~~~~~esp  262 (521)
                      ...+++.|++|+++||++.++...+..+|.++++.+..+         ...+|||++|++.+++.++.. +....+||+|
T Consensus       138 ~~~~~~~e~~p~~~Rg~~~~~~~~~~~~G~~lg~~~~~~~~~~~~~~~~~~~gWR~~f~i~~~~~l~~~-~~~~~~~esp  216 (490)
T PRK10642        138 GASIFVAEYSPDRKRGFMGSWLDFGSIAGFVLGAGVVVLISTIVGEANFLDWGWRIPFFIALPLGIIGL-YLRHALEETP  216 (490)
T ss_pred             HHHHHHHHhCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHhcCccHHHHHHHHHHHHHHHH-HHHHcCCCCh
Confidence            999999999999999999999999888888888765322         136799999999877666554 5567889999


Q ss_pred             hHHHhcCCHHHHHHHHHHHhhhcCCCCCCCccccccCCCCCccccCCCcccccccHHHHhccHHHHHHHHHHHHHH----
Q 039541          263 RWLFIHGHEAEAMAVLKRLASRSNYQSDYGLESCCLSNMPPKAKNVIPKLDLYSSLKDLFNRKWALRRLLTIMALA----  338 (521)
Q Consensus       263 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~----  338 (521)
                      ++...+++.++.           +.+           ..    ++     ..+.++++++++.  ++.........    
T Consensus       217 ~~~~~~~~~~~~-----------~~~-----------~~----~~-----~~~~~~~~~~~~~--~~~~~~~~~~~~~~~  263 (490)
T PRK10642        217 AFQQHVDKLEQG-----------DRE-----------GL----QD-----GPKVSFKEIATKH--WRSLLTCIGLVIATN  263 (490)
T ss_pred             hHHHHHHhhhhh-----------ccc-----------cc----cc-----cccCCHHHHHHHh--HHHHHHHHHHHHHHH
Confidence            864322111100           000           00    00     0012456666532  12222221111    


Q ss_pred             HHHHHHHHhHHhhc-cCCCccHHH---HHHHHHHHhHhHHHHHHHHHhhcCCchHHHHHHHHHHHHHHH-HHhcCCchHH
Q 039541          339 FGIGVVYFGLLLGV-GNLSFNIYL---SLAFNGLLDIPAYLLTFILIERWSRKSSILTFCILSGTCSAI-CVAIGDEQEV  413 (521)
Q Consensus       339 ~~~~~~~~~~~~~~-~~~~~~~~~---~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~i~~~~-~~~~~~~~~~  413 (521)
                      +.........|.++ +..+.+...   ......++.+++.++.|+++||+|||+.+..+.++..+..+. +.........
T Consensus       264 ~~~~~~~~~~p~~l~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~  343 (490)
T PRK10642        264 VTYYMLLTYMPSYLSHNLHYSEDHGVLIIIAIMIGMLFVQPVMGLLSDRFGRRPFVILGSVALFVLAIPAFILINSNVIG  343 (490)
T ss_pred             HHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHhCCCHH
Confidence            22222223344444 344544322   223345667788889999999999999887776544333222 2222222123


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhccccCchhhhhhhHHHHHhhhhhhhHHHHHHHhhc---cchhHHHHHHHHHHHHHh
Q 039541          414 LQIGLELASFFSACVAFNVLLVFGTELFTTCVRNSTTSLVRQAVNLGAAFSPVLISAGR---QNEFLSFGVFGLVVFCFG  490 (521)
Q Consensus       414 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~p~~~~~~~---~~~~~~~~~~~~~~~~~~  490 (521)
                      ...+..++.+++.+...+....+..|.+|++.|+++.|+.+....+++.++|++.++..   .+...++.+..+.++++.
T Consensus       344 ~~~~~~~~~g~~~~~~~g~~~~~~~~~~p~~~Rg~~~g~~~~~~~~~g~~~p~i~g~l~~~~~~~~~~~~~~~~~~~i~~  423 (490)
T PRK10642        344 LIFAGLLMLAVILNCFTGVMASTLPAMFPTHIRYSALAAAFNISVLVAGLTPTLAAWLVESTQNLMMPAYYLMVVAVIGL  423 (490)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHH
Confidence            34445555666666666777788889999999999999877777777888998887621   223444444555555555


Q ss_pred             HhhhccccCCCCCC
Q 039541          491 FFVVFLPETIGVTL  504 (521)
Q Consensus       491 ~~~~~~~~~~~~~~  504 (521)
                      +..+++||++++..
T Consensus       424 ~~~~~~pes~~~~~  437 (490)
T PRK10642        424 ITGVTMKETANRPL  437 (490)
T ss_pred             HHHHHhccccCCCC
Confidence            55666788766543

>COG2814 AraJ Arabinose efflux permease [Carbohydrate transport and metabolism]

Probab=100.00  E-value=7.5e-36  Score=278.03  Aligned_cols=372  Identities=17%  Similarity=0.183  Sum_probs=304.9

Q ss_pred             ChhHHHHHHHHHHHHHHHHHHHhhhhccccCCcccccCCcccccCCccccccccCcceecCCCCcceeeecceeeCCccc
Q 039541           38 GLPQFIQVILISLLLIFESQQTFISVYTDEEPTWHCINNTTTCSSSSDICTLSKSAWAWDRPSDTTIISDWSLECAGSSI  117 (521)
Q Consensus        38 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~p~~~c~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~  117 (521)
                      .+..|..++.+.++.|..+...+.+..+                                   +|++.+|+|++..+.  
T Consensus         8 ~~~~~~~l~aLa~~~F~igttEfv~~gL-----------------------------------Lp~iA~dl~vs~~~a--   50 (394)
T COG2814           8 RKPMWLALLALALAAFAIGTTEFVPVGL-----------------------------------LPPIAADLGVSEGAA--   50 (394)
T ss_pred             cccchHHHHHHHHHHHHHHhHHHHHHhc-----------------------------------hHHHHHHcCCCHHHH--
Confidence            3455777788888889889999988888                                   999999999999777  


Q ss_pred             cchhhHHHHHHHHHHhhhhhhhccccCCCCchHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHhhccchhhHhhhhhhe
Q 039541          118 LSGLPSSCFFIGCLLGGLALSTLGDSSSLGRKKLLFLSCFAMSITALATIFANNIWIYSTIRFVAGFFRAPIMTSVIVLL  197 (521)
Q Consensus       118 ~~~~~~s~~~lg~~i~~~~~g~l~dr~~~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i  197 (521)
                        |++.|.|.++..+++++...+.||  +.||++++..+.++.++++++++++||+.++++|++.|+..|..++...++.
T Consensus        51 --G~lis~yAl~~ai~ap~l~~lt~r--~~Rr~lLl~~l~lFi~~n~l~alAp~f~~Ll~aR~~~g~a~G~f~~i~~~~a  126 (394)
T COG2814          51 --GQLITAYALGVALGAPLLALLTGR--LERRRLLLGLLALFIVSNLLSALAPSFAVLLLARALAGLAHGVFWSIAAALA  126 (394)
T ss_pred             --HHHHHHHHHHHHHHHHHHHHHHcc--cchHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence              999999999999999999999999  9999999999999999999999999999999999999999999999999999


Q ss_pred             eeeecCcchhHHHHHHHHHHHHHHHHHHHH-HHhhcCCchhHHHHHHHHHHHHHHhhhceeeecchhHHHhcCCHHHHHH
Q 039541          198 SEMVSKRWRGQVVIIGFTFFSFGLVSLPAV-AYLSRGSSWKMLYVWTSIPSIVCCIIIYPFISESPRWLFIHGHEAEAMA  276 (521)
Q Consensus       198 ~~~~~~~~rg~~~~~~~~~~~~G~~i~~~i-~~~~~~~~wr~~f~~~~~~~~~~~~~~~~~~~esp~~~~~~~~~~~~~~  276 (521)
                      .+..|+++|++++++...+.+++.++|..+ .++.+.+|||+.|+..+.++++.++..+..+|  |+.     .      
T Consensus       127 ~~lvpp~~~~~Aiaiv~~G~tlA~v~GvPLGt~ig~~~GWR~~F~~ia~l~ll~~~~~~~~lP--~~~-----~------  193 (394)
T COG2814         127 ARLVPPGKRGRALALVFTGLTLATVLGVPLGTFLGQLFGWRATFLAIAVLALLALLLLWKLLP--PSE-----I------  193 (394)
T ss_pred             HHHcCccchhhHHHHHHHHHHHHHHHhccHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhCC--Ccc-----C------
Confidence            999999999999999999999999999888 56778899999999999999999988888888  210     0      


Q ss_pred             HHHHHhhhcCCCCCCCccccccCCCCCccccCCCcccccccHHHHhccHHHHHHHHHHHHHHHHHHHHHHh-HHhhccCC
Q 039541          277 VLKRLASRSNYQSDYGLESCCLSNMPPKAKNVIPKLDLYSSLKDLFNRKWALRRLLTIMALAFGIGVVYFG-LLLGVGNL  355 (521)
Q Consensus       277 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~  355 (521)
                               .++                      ......+..+++|+|..+..++...+...+....|.+ -|+..+..
T Consensus       194 ---------~~~----------------------~~~~~~~~~~~l~~p~v~~~l~~t~l~~~g~F~~ftYi~P~L~~v~  242 (394)
T COG2814         194 ---------SGS----------------------LPGPLRTLLRLLRRPGVLLGLLATFLFMTGHFALYTYIRPFLESVA  242 (394)
T ss_pred             ---------CCC----------------------CCcchhHHHHHhcCchHHHHHHHHHHHHcchhhhHHhHHHHHHHcc
Confidence                     000                      0000124567899999888888877777777666644 46655556


Q ss_pred             CccH---HHHHHHHHHHhHhHHHHHHHHHhhcCCchHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHH
Q 039541          356 SFNI---YLSLAFNGLLDIPAYLLTFILIERWSRKSSILTFCILSGTCSAICVAIGDEQEVLQIGLELASFFSACVAFNV  432 (521)
Q Consensus       356 ~~~~---~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  432 (521)
                      +.+.   ......++++.++|+.++|++.|| +.|+.+.....+.++.++.+.+..... +...+..+++++........
T Consensus       243 g~s~~~vs~~Ll~~Gv~~~~Gn~~gGrl~dr-~~~~~l~~~~~l~a~~~l~l~~~~~~~-~~~~~~~~~wg~a~~~~~~~  320 (394)
T COG2814         243 GFSVSAVSLVLLAFGIAGFIGNLLGGRLADR-GPRRALIAALLLLALALLALTFTGASP-ALALALLFLWGFAFSPALQG  320 (394)
T ss_pred             CCCHhHHHHHHHHHHHHHHHHHHHHhhhccc-cchhHHHHHHHHHHHHHHHHHHhcchH-HHHHHHHHHHHHHhhhhhhH
Confidence            6554   455577889999999999999999 888888888888888887777766554 45555566677777776677


Q ss_pred             HHHhhccccCchhhhhhhHHHHHhhhhhhhHHHHHHHh--hccchhHHHHHHHHHHHHHhHhhhccc
Q 039541          433 LLVFGTELFTTCVRNSTTSLVRQAVNLGAAFSPVLISA--GRQNEFLSFGVFGLVVFCFGFFVVFLP  497 (521)
Q Consensus       433 ~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~p~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~  497 (521)
                      ......+ .-++.++.+.+++....++|..+|..+.|.  ...++....++.+++.+++.++.+...
T Consensus       321 ~~~~~a~-~~p~~~~~a~sl~~aa~nlgia~GA~lGG~v~~~~g~~~~~~~~a~l~~~a~~~~~~~~  386 (394)
T COG2814         321 LQTRLAR-LAPDAADLAGSLNVAAFNLGIALGAALGGLVLDALGYAATGWVGAALLLLALLLALLSA  386 (394)
T ss_pred             HHHHhcc-cCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHH
Confidence            7777777 445666999999999999999999999986  445666667777777777666654443

>TIGR00903 2A0129 major facilitator 4 family protein

Probab=100.00  E-value=6.4e-36  Score=288.07  Aligned_cols=356  Identities=10%  Similarity=-0.008  Sum_probs=257.8

Q ss_pred             cceecCCCCcceeeecceeeCCccccchhhHHHHHHHHHHhhhhhhhccccCCCCchHHHHHHHHHHHHHHHHHhccccH
Q 039541           93 AWAWDRPSDTTIISDWSLECAGSSILSGLPSSCFFIGCLLGGLALSTLGDSSSLGRKKLLFLSCFAMSITALATIFANNI  172 (521)
Q Consensus        93 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~s~~~lg~~i~~~~~g~l~dr~~~Grr~~l~~~~~~~~~~~~~~~~~~~~  172 (521)
                      .|....|.+|.+++|+|++.++.    |++.+.+.+++.+++++.|+++||  +|||+++..+++....+.+....++|+
T Consensus         6 ~~~~~~~~lp~i~~~~~~s~~~~----g~~~s~~~~g~~i~~~~~G~l~Dr--~grr~~~~~~~~~~~~~~~~~~~~~~~   79 (368)
T TIGR00903         6 IWVTFSPVLSLVAEDIDVSKEEL----GLLAITYPAAFLALTIPSGLLLDR--AFKRWFLFGSLATFAAAAGRLLDPFNY   79 (368)
T ss_pred             HHHHHHhhHHHHHHHhCcCHHHH----HHHHHHHHHHHHHHHHHHHHHHHH--ccchHHHHHHHHHHHHHHHHHHHhccH
Confidence            34445556999999999999776    999999999999999999999999  999998776665555544433444799


Q ss_pred             HHHHHHHHHhhccchhhHhhhhhheeeeecCcchhHHHHHHHHHHHHHHHHHHHH-HHhhcCCchhHHHHHHHHHHHHHH
Q 039541          173 WIYSTIRFVAGFFRAPIMTSVIVLLSEMVSKRWRGQVVIIGFTFFSFGLVSLPAV-AYLSRGSSWKMLYVWTSIPSIVCC  251 (521)
Q Consensus       173 ~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~rg~~~~~~~~~~~~G~~i~~~i-~~~~~~~~wr~~f~~~~~~~~~~~  251 (521)
                      +.+++.|+++|++.+. .......++|++|+++|++++++.+.+..+|.++++++ +.+.+.+|||+.|++.++++++..
T Consensus        80 ~~l~~~R~l~G~g~~~-~~~~~~~~~~~~~~~~r~~a~~~~~~~~~lG~~l~~~~~~~l~~~~gWr~~f~~~~~l~~~~~  158 (368)
T TIGR00903        80 EWLLACQLLAALGQPF-LLNAFAPAASQIREERRDLVISLLSFAMYLGIIFALAAGLKIYTAGGLQLLIIPIAAVAAAGI  158 (368)
T ss_pred             HHHHHHHHHHHhHhHH-HHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHH
Confidence            9999999999999985 55566667999999999999999999999999999988 566678899999999888888877


Q ss_pred             hhhceeeecchhHHHhcCCHHHHHHHHHHHhhhcCCCCCCCccccccCCCCCccccCCCcccccccHHHHhccHHHHHHH
Q 039541          252 IIIYPFISESPRWLFIHGHEAEAMAVLKRLASRSNYQSDYGLESCCLSNMPPKAKNVIPKLDLYSSLKDLFNRKWALRRL  331 (521)
Q Consensus       252 ~~~~~~~~esp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~  331 (521)
                      ++.++++||+|++..   +..+.+    +                                 ...++++++++|.++...
T Consensus       159 ~~~~~~lp~~p~~~~---~~~~~~----~---------------------------------~~~~~~~ll~~~~~~~~~  198 (368)
T TIGR00903       159 ILVLAALPALPFQAA---EGFGFK----D---------------------------------AVKEFGALAGRKDLWIIG  198 (368)
T ss_pred             HHHHHHcCCCCCCCC---CCcchH----H---------------------------------HHHHHHHHHcChhHHHHH
Confidence            677788899875310   000000    0                                 001467889999877666


Q ss_pred             HHHHHHHHHHHHHHHhHHhhccCCCccHHHHHHHHHHHhHhHHHHHHHHHhhcCCc---hHHH-HHHHHHHHHHHHHHhc
Q 039541          332 LTIMALAFGIGVVYFGLLLGVGNLSFNIYLSLAFNGLLDIPAYLLTFILIERWSRK---SSIL-TFCILSGTCSAICVAI  407 (521)
Q Consensus       332 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~---~~~~-~~~~~~~i~~~~~~~~  407 (521)
                      +..++............|.++++.+.+.. ......+..+.+.+..+++.||..||   +... ....+.++.+..+...
T Consensus       199 ~~~~~~~~~~~~~~~wlp~~L~~~g~s~~-~~~~~~l~~~~g~~g~~~~~d~~~r~~~r~~~~~~~~~~~a~~~~~~~~~  277 (368)
T TIGR00903       199 AILGFGVALFDNLAIWLEAALRPAGLEDI-AGDAVALAILAGLIGVAVIPDRVARAGLRSIYIRAAALLIAAFFLALAFE  277 (368)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHCCCChH-HHHHHHHHHHHHHHHHHHhhHHhhhhhhHHHHHHHHHHHHHHHHHHHHHc
Confidence            66555555554444455666666665543 33334445555666678888887654   2222 2333334444333332


Q ss_pred             CCchHHHHHHHHHHHHHHHHHHHHHHHHhhccccCchhhhhhhHHHHHhhhhhhhHHHHHHHhhccchhHHHHHHHHHHH
Q 039541          408 GDEQEVLQIGLELASFFSACVAFNVLLVFGTELFTTCVRNSTTSLVRQAVNLGAAFSPVLISAGRQNEFLSFGVFGLVVF  487 (521)
Q Consensus       408 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~p~~~~~~~~~~~~~~~~~~~~~~  487 (521)
                      .+.  ........+.+++....++..+.+.+|.+|++.|+++.|+.+..+++|++++|.+.+....+....|.++++..+
T Consensus       278 ~~~--~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~~~rgt~~G~~~~~g~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~  355 (368)
T TIGR00903       278 LNR--LALFAFIGIAGLLMLPAYAIIMDWIGKFCDKELHGKAAGAIGFTSRAISVALALAAMLFISSAEAYFTFLAILIT  355 (368)
T ss_pred             ccc--HHHHHHHHHHHHhhhhhHHHHHHHHHHhcchhhcCcccchhhHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence            222  334445555666677777888899999999999999999999999999999999887643456677777887777


Q ss_pred             HHhHhhhcccc
Q 039541          488 CFGFFVVFLPE  498 (521)
Q Consensus       488 ~~~~~~~~~~~  498 (521)
                      ++.+....+++
T Consensus       356 i~~~~~~~~~~  366 (368)
T TIGR00903       356 IAFAIALLLPN  366 (368)
T ss_pred             HHHHHHHhCCC
Confidence            77666544343

This family of proteins are uncharacterized proteins from archaea. This family includes proteins from Archaeoglobus fulgidus and Aeropyrum pernix.

>PRK09556 uhpT sugar phosphate antiporter; Reviewed

Probab=100.00  E-value=6.1e-36  Score=299.92  Aligned_cols=398  Identities=12%  Similarity=0.041  Sum_probs=278.2

Q ss_pred             CCChhHHHHHHHHHHHHHHHHHHHhhhhccccCCcccccCCcccccCCccccccccCcceecCCCCcceeeecceeeCCc
Q 039541           36 NLGLPQFIQVILISLLLIFESQQTFISVYTDEEPTWHCINNTTTCSSSSDICTLSKSAWAWDRPSDTTIISDWSLECAGS  115 (521)
Q Consensus        36 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~p~~~c~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~i~~~~~~~~~~~  115 (521)
                      .+.|..+.++.++++++++...++..++..                                   .|.+.+|+|++..+.
T Consensus        22 ~~~~~~~~i~~~~~~~~~~~y~~r~~~~~~-----------------------------------~~~i~~~~~~s~~~~   66 (467)
T PRK09556         22 MWFKPFMQSYLVVFIGYLTMYLIRKNFKAA-----------------------------------QNDMISTYGLSTTEL   66 (467)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhcChhhh-----------------------------------hHHHHHhcCCCHHHH
Confidence            356677888888999999999999999999                                   999999999999766


Q ss_pred             cccchhhHHHHHHHHHHhhhhhhhccccCCCCchHHHHHHHHHHHHHHHHHhc-----cccHHHHHHHHHHhhccchhhH
Q 039541          116 SILSGLPSSCFFIGCLLGGLALSTLGDSSSLGRKKLLFLSCFAMSITALATIF-----ANNIWIYSTIRFVAGFFRAPIM  190 (521)
Q Consensus       116 ~~~~~~~~s~~~lg~~i~~~~~g~l~dr~~~Grr~~l~~~~~~~~~~~~~~~~-----~~~~~~l~~~r~l~G~~~g~~~  190 (521)
                          |++.+++.+++.+++++.|+++||  +|||+++.+++++.+++.++.++     ++|++.+++.|+++|++.+...
T Consensus        67 ----g~~~s~~~~~~~~~~~~~G~l~Dr--~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~  140 (467)
T PRK09556         67 ----GMIGLGFSITYGVGKTLVGYYADG--KNTKQFLPFLLILSAICMLGFGASLGSGSVSLGLMIALWALSGFFQSTGG  140 (467)
T ss_pred             ----HHHHHHHHHHHHHHHhhhhhHhhc--cCccchHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHhccc
Confidence                999999999999999999999999  99999998888888777766654     6899999999999999999999


Q ss_pred             hhhhhheeeeecCcchhHHHHHHHHHHHHHHHHHHHHH-HhhcC---CchhHHHHHHHHHHHHHHhhhceeeecchhHHH
Q 039541          191 TSVIVLLSEMVSKRWRGQVVIIGFTFFSFGLVSLPAVA-YLSRG---SSWKMLYVWTSIPSIVCCIIIYPFISESPRWLF  266 (521)
Q Consensus       191 ~~~~~~i~~~~~~~~rg~~~~~~~~~~~~G~~i~~~i~-~~~~~---~~wr~~f~~~~~~~~~~~~~~~~~~~esp~~~~  266 (521)
                      +...+++.|++|+++||++++++..+.++|.++++.++ ++...   .+||..|.+.+++.++..++.+++.+++|+...
T Consensus       141 ~~~~~~i~~~~~~~~rg~a~gi~~~~~~lG~~l~~~i~~~~~~~~~~~~~~~~f~~~g~~~~~~~i~~~~~~~~~p~~~~  220 (467)
T PRK09556        141 PCSYSTITRWTPRRKRGRFLGFWNISHNLGGAGAGGVALWGANYFFDGHVIGMFIFPSIIALIIGFIGLRYGSDSPEELG  220 (467)
T ss_pred             hHHHHHHHHHcCccceeeeEEeeecccchhhhHHHHHHHHHHHhhccCcchhHHHHHHHHHHHHHHHHHHhCCCChhhcC
Confidence            99999999999999999999999999999999998874 34332   269999998888887776566666677664210


Q ss_pred             hcCCHHHHHHHHHHHhhhcCCCCCCCccccccCCCCCccccCCCccccccc-HHHHhccHHHHHHHHHHHHHHHHHHHHH
Q 039541          267 IHGHEAEAMAVLKRLASRSNYQSDYGLESCCLSNMPPKAKNVIPKLDLYSS-LKDLFNRKWALRRLLTIMALAFGIGVVY  345 (521)
Q Consensus       267 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~l~~~~~~~~~~~~~~~~~~~~~~~~  345 (521)
                      .. +.++  .    . + ....         .   +.+.++ .++....+. .+..++++.++...+..++.........
T Consensus       221 ~~-~~~~--~----~-~-~~~~---------~---~~~~~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~  278 (467)
T PRK09556        221 WG-KAEE--I----F-G-EPIS---------E---EDKETE-STDMTKWQIFVEYVLKNPVIWLLCFANIFLYIVRIGID  278 (467)
T ss_pred             CC-Chhh--c----c-c-Cccc---------h---hhhccc-cccCcHHHHHHHHHHcChHHHHHHHHHHHHHHHHHHHH
Confidence            00 0000  0    0 0 0000         0   000000 000000111 2236788887766555554444443333


Q ss_pred             HhHHhhc-cCCCccHHHH---HHHHHHHhHhHHHHHHHHHhhcCCchHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHH
Q 039541          346 FGLLLGV-GNLSFNIYLS---LAFNGLLDIPAYLLTFILIERWSRKSSILTFCILSGTCSAICVAIGDEQEVLQIGLELA  421 (521)
Q Consensus       346 ~~~~~~~-~~~~~~~~~~---~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~  421 (521)
                      +..|.++ +..+.+....   .....++.+++.++.|+++||++||+.+.....+..++...+......+.+...+..++
T Consensus       279 ~~~p~yl~~~~g~s~~~a~~~~~~~~~~~~ig~~~~G~lsDr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  358 (467)
T PRK09556        279 NWSPVYAFQELGFSKEDAINTFTLFEIGALVGSLLWGWLSDLANGRRALVACIALALIIFTLGVYQHATSEYMYLASLFA  358 (467)
T ss_pred             HHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCchHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHH
Confidence            4445444 5566655333   33455678899999999999999988766554443333222222222222333344555


Q ss_pred             HHHHHHHHHHHHHHhhccccCchhhhhhhHHHHHhhhh-hhhHHHHHHHhhc--------------cchhHHHHHHHHHH
Q 039541          422 SFFSACVAFNVLLVFGTELFTTCVRNSTTSLVRQAVNL-GAAFSPVLISAGR--------------QNEFLSFGVFGLVV  486 (521)
Q Consensus       422 ~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~-g~~~~p~~~~~~~--------------~~~~~~~~~~~~~~  486 (521)
                      .|++.............|.+|++.||++.|+.+..+++ |.+++|.+.|...              .++...|.+++++.
T Consensus       359 ~G~~~~~~~~~~~~~~~~~~p~~~~g~a~gi~~~~g~l~g~~~~~~~~G~i~~~~~~g~~~~~~~~~~~~~~f~~~~~~~  438 (467)
T PRK09556        359 LGFLVFGPQLLIGVAAVGFVPKKAIGVANGIKGTFAYLFGDSFAKVGLGMIADPTKNGTPIFGYTLTGWAGTFAALDIAA  438 (467)
T ss_pred             HHHHHhhHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHhHHHHhhhHHHHhcccccccccccccccChHHHHHHHHHHH
Confidence            55443333334446677999999999999999999987 7789999988632              35677777777777


Q ss_pred             HHHhHhhhcc
Q 039541          487 FCFGFFVVFL  496 (521)
Q Consensus       487 ~~~~~~~~~~  496 (521)
                      +++.+..+.+
T Consensus       439 ~~~~~~~~~~  448 (467)
T PRK09556        439 IGCICLMAIV  448 (467)
T ss_pred             HHHHHHHHHH
Confidence            7776665544

>TIGR02332 HpaX 4-hydroxyphenylacetate permease

Probab=100.00  E-value=4e-35  Score=288.75  Aligned_cols=391  Identities=14%  Similarity=0.169  Sum_probs=271.8

Q ss_pred             ChhHHHHHHHHHHHHHHHHHHHhhhhccccCCcccccCCcccccCCccccccccCcceecCCCCcceeeecceeeCCccc
Q 039541           38 GLPQFIQVILISLLLIFESQQTFISVYTDEEPTWHCINNTTTCSSSSDICTLSKSAWAWDRPSDTTIISDWSLECAGSSI  117 (521)
Q Consensus        38 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~p~~~c~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~  117 (521)
                      +|.+|.++.++++.++++..|...+++.                                   .|.+++|+|++.++.  
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~d~~~~~~~-----------------------------------~~~l~~~~~~s~~~~--   45 (412)
T TIGR02332         3 KKLFRRLIIFLFILFIFSFLDRINIGFA-----------------------------------GLTMGKDLGLSATMF--   45 (412)
T ss_pred             eeehhHHHHHHHHHHHHHHhhhhhHHHH-----------------------------------HHhhHhhcCCCHHHH--
Confidence            3567888899999999999999999999                                   899999999999776  


Q ss_pred             cchhhHHHHHHHHHHhhhhhhhccccCCCCchHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHhhccchhhHhhhhhhe
Q 039541          118 LSGLPSSCFFIGCLLGGLALSTLGDSSSLGRKKLLFLSCFAMSITALATIFANNIWIYSTIRFVAGFFRAPIMTSVIVLL  197 (521)
Q Consensus       118 ~~~~~~s~~~lg~~i~~~~~g~l~dr~~~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i  197 (521)
                        |++.+++.+++.+++++.|+++||  +|||+++..++++.+++++++++++|++.+++.|+++|++.+...+....++
T Consensus        46 --g~~~s~~~~~~~~~~~~~g~l~dr--~G~r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~  121 (412)
T TIGR02332        46 --GLAATLFYAAYVICGIPSNIMLAI--IGARRWIAGIMVLWGIASTATMFATGPESLYLLRILVGIAEAGFLPGILLYL  121 (412)
T ss_pred             --HHHHHHHHHHHHHHHhhHHHHHHH--hChHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence              999999999999999999999999  9999999999999999999999999999999999999999999999999999


Q ss_pred             eeeecCcchhHHHHHHHHHHHHHHHHHHHH-HHhhc------CCchhHHHHHHHHHHHHHHhhhceeeecchhHHHhcCC
Q 039541          198 SEMVSKRWRGQVVIIGFTFFSFGLVSLPAV-AYLSR------GSSWKMLYVWTSIPSIVCCIIIYPFISESPRWLFIHGH  270 (521)
Q Consensus       198 ~~~~~~~~rg~~~~~~~~~~~~G~~i~~~i-~~~~~------~~~wr~~f~~~~~~~~~~~~~~~~~~~esp~~~~~~~~  270 (521)
                      .|++|+++|++++++++.+..+|.++++.+ +++..      ..|||+.|++.+++.++..++.++++||+|+..  +.-
T Consensus       122 ~~~~~~~~rg~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~gwr~~f~~~~~~~l~~~~~~~~~~~~~p~~~--~~l  199 (412)
T TIGR02332       122 TFWFPAYFRARANALFMIAMPVTMALGLILSGYILALDGLMALKGWQWLFLLEGFPSVILGVMTWFWLDDSPDKA--KWL  199 (412)
T ss_pred             HHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCccchhHHHHHHHHHHHHHHHHHhhccCCCcccC--CCC
Confidence            999999999999999999999999999998 45542      369999999999888877767778889998521  100


Q ss_pred             HHHHHHHHHHHhhhcCCCCCCCccccccCCCCCccccCCCcccccccHHHHhccHHHHHHHHHHHHHHHHHHHHHHhHHh
Q 039541          271 EAEAMAVLKRLASRSNYQSDYGLESCCLSNMPPKAKNVIPKLDLYSSLKDLFNRKWALRRLLTIMALAFGIGVVYFGLLL  350 (521)
Q Consensus       271 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  350 (521)
                      .+++++..++..+ .+.. +.+..         ++............+++++ ++.++...+..+.............|.
T Consensus       200 ~~~~~~~~~~~~~-~~~~-~~~~~---------~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~p~  267 (412)
T TIGR02332       200 DEEDKKALKEMID-NDQL-TLEQP---------EGAFAHAAMPQRSMLREIF-TPAIMLYTLAYFCLTNTLSAINIWTPQ  267 (412)
T ss_pred             CHHHHHHHHHHHH-hccc-ccccc---------ccccccccccHHHHHHHhc-ChHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            1111111111101 0000 00000         0000000001012344444 455554444433333344444445566


Q ss_pred             hccCC--CccH---HHHHHHHHHHhHhHHHHHHHHHhhcCCchH-HHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHH
Q 039541          351 GVGNL--SFNI---YLSLAFNGLLDIPAYLLTFILIERWSRKSS-ILTFCILSGTCSAICVAIGDEQEVLQIGLELASFF  424 (521)
Q Consensus       351 ~~~~~--~~~~---~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~-~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~  424 (521)
                      ++++.  +.+.   ........++.+++.++.|+++||+++|+. ......+..++..+... .... ........+.++
T Consensus       268 ~l~~~~~~~s~~~~~~~~~~~~l~~~~g~l~~g~l~dr~~~r~~~~~~~~~~~~~~~~~~~~-~~~~-~~~~~~~~~~~~  345 (412)
T TIGR02332       268 ILQSFNQGSSNIMIGLLAAIPQFCTIFGMIWWSRHSDRLKERKHHTALPYLFAAAGWLLASA-TDHN-LIQLLGIIMASM  345 (412)
T ss_pred             HHHhcCCCCcHHHhHHHhhHHHHHHHHHHHHHHHHhcccCccHHHHHHHHHHHHHHHHHHHh-cCCH-HHHHHHHHHHHH
Confidence            66653  3332   223455567788899999999999997774 33344444443322222 2221 222222223333


Q ss_pred             HHHHHHHHHHHhhccccCchhhhhhhHHHHHhhhhhhhHHHHHHHhhcc---chhHHHHHHHHH
Q 039541          425 SACVAFNVLLVFGTELFTTCVRNSTTSLVRQAVNLGAAFSPVLISAGRQ---NEFLSFGVFGLV  485 (521)
Q Consensus       425 ~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~p~~~~~~~~---~~~~~~~~~~~~  485 (521)
                      +.....+..+....|.+|++.|+++.|+.+...++|++++|.+.+....   ++...+.+.+++
T Consensus       346 g~~~~~~~~~~~~~~~~~~~~~~~a~g~~~~~~~~g~~~~p~~~g~i~~~~g~~~~~~~~~~~~  409 (412)
T TIGR02332       346 GSFSAMAIFWTTPDQSISLQARAIAIAVINATGNIGSALSPFLIGILKDATGSFNSGLWFVAAL  409 (412)
T ss_pred             HhhhhhhHHHhhcccccchHHHHHHHHHHHHhhhhhhhhhhhhcccccccCCCCchhHHHHHHH
Confidence            3333344555666788999999999999999999999999999986322   355555544443

This protein is a part of the Major Facilitator Superfamily (Pfam family pfam07690). Member of this family are found in a number of proteobacterial genomes, but only in the context of having genes for 4-hydroxyphenylacetate (4-HPA) degradation. The protein is characterized by Prieto, et al. (PubMed:9315705) as 4-hydroxyphenylacetate permease in E. coli, where 3-HPA and 3,4-dihydroxyphenylacetate are shown to competitively inhibit 4-HPA transport and therefore also interact specificially.

>PRK11551 putative 3-hydroxyphenylpropionic transporter MhpT; Provisional

Probab=100.00  E-value=1.1e-34  Score=286.72  Aligned_cols=376  Identities=17%  Similarity=0.165  Sum_probs=282.2

Q ss_pred             ChhHHHHHHHHHHHHHHHHHHHhhhhccccCCcccccCCcccccCCccccccccCcceecCCCCcceeeecceeeCCccc
Q 039541           38 GLPQFIQVILISLLLIFESQQTFISVYTDEEPTWHCINNTTTCSSSSDICTLSKSAWAWDRPSDTTIISDWSLECAGSSI  117 (521)
Q Consensus        38 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~p~~~c~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~  117 (521)
                      ++++|.++.++++..++++++....+..                                   .|.+.+++|.++++.  
T Consensus        10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------------------------------~~~~~~~~~~s~~~~--   52 (406)
T PRK11551         10 SSRLALTIGLCFLVALLEGLDLQSAGVA-----------------------------------APRMAQEFGLDVAQM--   52 (406)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHH-----------------------------------HHHHHHHhCCCHHHH--
Confidence            4578889999999999999999999999                                   899999999999766  


Q ss_pred             cchhhHHHHHHHHHHhhhhhhhccccCCCCchHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHhhccchhhHhhhhhhe
Q 039541          118 LSGLPSSCFFIGCLLGGLALSTLGDSSSLGRKKLLFLSCFAMSITALATIFANNIWIYSTIRFVAGFFRAPIMTSVIVLL  197 (521)
Q Consensus       118 ~~~~~~s~~~lg~~i~~~~~g~l~dr~~~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i  197 (521)
                        +++.+.+.++..+++++.|+++||  +|||+++..+.++.+++.++++++++++.+++.|++.|++.+...+...+++
T Consensus        53 --g~~~~~~~~~~~~~~~~~g~l~dr--~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~~~~~~~~~~~~  128 (406)
T PRK11551         53 --GWAFSAGILGLLPGALLGGRLADR--IGRKRILIVSVALFGLFSLATAQAWDFPSLLVARLLTGVGLGGALPNLIALT  128 (406)
T ss_pred             --HHHHHHHHHHHHHHHHHHHHHHHH--hCCchhHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence              999999999999999999999999  9999999999999999999999999999999999999999999999999999


Q ss_pred             eeeecCcchhHHHHHHHHHHHHHHHHHHHHH-HhhcCCchhHHHHHHHHHHHHHHhhhceeeecchhHHHhcCCHHHHHH
Q 039541          198 SEMVSKRWRGQVVIIGFTFFSFGLVSLPAVA-YLSRGSSWKMLYVWTSIPSIVCCIIIYPFISESPRWLFIHGHEAEAMA  276 (521)
Q Consensus       198 ~~~~~~~~rg~~~~~~~~~~~~G~~i~~~i~-~~~~~~~wr~~f~~~~~~~~~~~~~~~~~~~esp~~~~~~~~~~~~~~  276 (521)
                      .|++|+++|++++++.+.+..+|..+++.++ .+.+..+||+.|++.+++.++..++...++||+|++...+++.++.+.
T Consensus       129 ~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~  208 (406)
T PRK11551        129 SEAVGPRLRGTAVSLMYCGVPFGGALASVIGVLAAGDAAWRHIFYVGGVGPLLLVPLLMRWLPESRAFAQAAGAGKQRAP  208 (406)
T ss_pred             HHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccCHHHHHHHHHHHHHHHHHHHHHhCCCChhHHhccCcchhhhh
Confidence            9999999999999999999999999999884 666778999999998877666665666678988754322111100000


Q ss_pred             HHHHHhhhcCCCCCCCccccccCCCCCccccCCCcccccccHHHHhccHH---HHHHHHHHHHHHHHHHHHHHhHHhhcc
Q 039541          277 VLKRLASRSNYQSDYGLESCCLSNMPPKAKNVIPKLDLYSSLKDLFNRKW---ALRRLLTIMALAFGIGVVYFGLLLGVG  353 (521)
Q Consensus       277 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~  353 (521)
                                                              ..+.+++++.   .+......+.............|.+.+
T Consensus       209 ----------------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~  248 (406)
T PRK11551        209 ----------------------------------------VLRALFGEGRATATLLLWISYFFTLIVLYFLLNWLPSLLV  248 (406)
T ss_pred             ----------------------------------------hHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                                                    1111222111   111111111111222222333455566


Q ss_pred             CCCccH---HHHHHHHHHHhHhHHHHHHHHHhhcCCchHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHH
Q 039541          354 NLSFNI---YLSLAFNGLLDIPAYLLTFILIERWSRKSSILTFCILSGTCSAICVAIGDEQEVLQIGLELASFFSACVAF  430 (521)
Q Consensus       354 ~~~~~~---~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  430 (521)
                      +.+.+.   ........++.+++.++.|++.||++||+.+..+.+...++++.+......  +...+..++.+++.....
T Consensus       249 ~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~g~~~~~~~  326 (406)
T PRK11551        249 GQGLSRSQAGLVQIAFNIGGALGSLLIGALMDRLRPRRVVLLIYAGILASLAALAAAPSF--AGMLLAGFAAGLFVVGGQ  326 (406)
T ss_pred             hCCCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhcCcH--HHHHHHHHHHHHHHHhHH
Confidence            656543   233445567788999999999999999998888776666666555544432  344555666777777778


Q ss_pred             HHHHHhhccccCchhhhhhhHHHHHhhhhhhhHHHHHHHhhc---cchhHHHHHHHHHHHHHhHhhhcc
Q 039541          431 NVLLVFGTELFTTCVRNSTTSLVRQAVNLGAAFSPVLISAGR---QNEFLSFGVFGLVVFCFGFFVVFL  496 (521)
Q Consensus       431 ~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~p~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~  496 (521)
                      +...++..|.+|++.|+++.|+.+....+|.+++|.+.|...   .++...+...+.+.+++.+..+.+
T Consensus       327 ~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~g~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  395 (406)
T PRK11551        327 SVLYALAPLFYPTQVRGTGVGAAVAVGRLGSMAGPLLAGQLLALGRSTVGVIGASIPVILVAALAALLL  395 (406)
T ss_pred             HHHHHHHHHHcchhhhhhhhhHHHHhhhHHHHHHhhhHhhhhccCCchHHHHHHHHHHHHHHHHHHHHH
Confidence            888999999999999999999999999999999999998732   223334444444455544444433

>PRK10406 alpha-ketoglutarate transporter; Provisional

Probab=100.00  E-value=2e-34  Score=286.17  Aligned_cols=381  Identities=14%  Similarity=0.118  Sum_probs=255.3

Q ss_pred             hHHHHHHHHHHHHHHHHHHHhhhhccccCCcccccCCcccccCCccccccccCcceecCCCCcceeeecc---eeeCCcc
Q 039541           40 PQFIQVILISLLLIFESQQTFISVYTDEEPTWHCINNTTTCSSSSDICTLSKSAWAWDRPSDTTIISDWS---LECAGSS  116 (521)
Q Consensus        40 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~p~~~c~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~i~~~~~---~~~~~~~  116 (521)
                      ++++.+...+++.+++.+|...+++.                                   .|.+.++++   .+..+. 
T Consensus        19 ~~~~~~~~~~~~~~~~~~d~~~~~~~-----------------------------------~~~l~~~~~~~~~~~~~~-   62 (432)
T PRK10406         19 RRIWAIVGASSGNLVEWFDFYVYSFC-----------------------------------SLYFAHIFFPSGNTTTQL-   62 (432)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHH-----------------------------------HHHHHHHhCCCCCchHHH-
Confidence            45566777788999999999999999                                   899999985   333322 


Q ss_pred             ccchhhHHHHHHHHHHhhhhhhhccccCCCCchHHHHHHHHHHHHHHHHHhccccHH--------HHHHHHHHhhccchh
Q 039541          117 ILSGLPSSCFFIGCLLGGLALSTLGDSSSLGRKKLLFLSCFAMSITALATIFANNIW--------IYSTIRFVAGFFRAP  188 (521)
Q Consensus       117 ~~~~~~~s~~~lg~~i~~~~~g~l~dr~~~Grr~~l~~~~~~~~~~~~~~~~~~~~~--------~l~~~r~l~G~~~g~  188 (521)
                      .+.+.+.+..+++..++++++|+++||  +|||+++..++++++++++++++++++.        .+++.|+++|++.|+
T Consensus        63 ~~~~~~~~~~~~~~~ig~~~~G~l~Dr--~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~G~g~g~  140 (432)
T PRK10406         63 LQTAGVFAAGFLMRPIGGWLFGRIADK--HGRKKSMLISVCMMCFGSLVIACLPGYETIGTWAPALLLLARLFQGLSVGG  140 (432)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHh--cCcHHHHHHHHHHHHHHHHHHhhcCCchhHHHHHHHHHHHHHHHHHhhhhh
Confidence            123445556666777999999999999  9999999999999999999999998874        689999999999999


Q ss_pred             hHhhhhhheeeeecCcchhHHHHHHHHHHHHHHHHHHHHHHhh---------cCCchhHHHHHHHHHHHHHHhhhceeee
Q 039541          189 IMTSVIVLLSEMVSKRWRGQVVIIGFTFFSFGLVSLPAVAYLS---------RGSSWKMLYVWTSIPSIVCCIIIYPFIS  259 (521)
Q Consensus       189 ~~~~~~~~i~~~~~~~~rg~~~~~~~~~~~~G~~i~~~i~~~~---------~~~~wr~~f~~~~~~~~~~~~~~~~~~~  259 (521)
                      .++...+++.|++|+++||++.++.+.+...|.++++.++..+         ..+|||++|++.+++.++.. +....+|
T Consensus       141 ~~~~~~~~i~e~~p~~~rg~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~gWr~~F~i~~~~~ll~~-~~~~~~~  219 (432)
T PRK10406        141 EYGTSATYMSEVAVEGRKGFYASFQYVTLIGGQLLALLVVVVLQQTLEDAELREWGWRIPFALGAVLAVVAL-WLRRQLD  219 (432)
T ss_pred             hHhhHHHHHHHhCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHhccchHHHHHHHHHHHHHHH-HHHhcCC
Confidence            9999999999999999999999999988888888887664322         25799999999888877765 5556678


Q ss_pred             cchhHHHhcCCHHHHHHHHHHHhhhcCCCCCCCccccccCCCCCccccCCCcccccccHHHHhccHHHHHHHHHHHHH-H
Q 039541          260 ESPRWLFIHGHEAEAMAVLKRLASRSNYQSDYGLESCCLSNMPPKAKNVIPKLDLYSSLKDLFNRKWALRRLLTIMAL-A  338 (521)
Q Consensus       260 esp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~-~  338 (521)
                      |+|++.       +. +      . .                            ...++++++++++.+...+..... .
T Consensus       220 e~~~~~-------~~-~------~-~----------------------------~~~~~~~l~~~~~~~~~~~~~~~~~~  256 (432)
T PRK10406        220 ETSQQE-------TR-A------L-K----------------------------EAGSLKGLWRNRRAFIMVLGFTAAGS  256 (432)
T ss_pred             CCchHH-------Hh-h------h-c----------------------------ccccHHHHHhhHHHHHHHHHHHHHHH
Confidence            776421       00 0      0 0                            002567788877654433322221 2


Q ss_pred             HHHHHHHHhHHhhc-cCCCccHHHH---HHHHHHHhHhHHHHHHHHHhhcCCchHHHHHHHHHHHHHHHHHh-cC-CchH
Q 039541          339 FGIGVVYFGLLLGV-GNLSFNIYLS---LAFNGLLDIPAYLLTFILIERWSRKSSILTFCILSGTCSAICVA-IG-DEQE  412 (521)
Q Consensus       339 ~~~~~~~~~~~~~~-~~~~~~~~~~---~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~i~~~~~~~-~~-~~~~  412 (521)
                      ..........|.++ +..+.+....   ..+..+...++..+.|+++||++||+.+.++..+.++....+.. .. ....
T Consensus       257 ~~~~~~~~~lp~~l~~~~g~s~~~~~~~~~i~~~~~~i~~~~~G~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~  336 (432)
T PRK10406        257 LCFYTFTTYMQKYLVNTAGMHANVASGIMTAALFVFMLIQPLIGALSDKIGRRTSMLCFGSLAALFTVPILSALQNVSSP  336 (432)
T ss_pred             HHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHcCCcH
Confidence            22222222234433 4455544332   23334555677788899999999999877766554433322211 11 1111


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhccccCchhhhhhhHHHHHhhhh-hhhHHHHHHHhhc--cchhHHHHHHHHHHHHH
Q 039541          413 VLQIGLELASFFSACVAFNVLLVFGTELFTTCVRNSTTSLVRQAVNL-GAAFSPVLISAGR--QNEFLSFGVFGLVVFCF  489 (521)
Q Consensus       413 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~-g~~~~p~~~~~~~--~~~~~~~~~~~~~~~~~  489 (521)
                      ........+..+..+...+..+.+.+|.+|++.|+++.|+.+..+++ ++...|++.+...  ..+...+...++..+++
T Consensus       337 ~~~~~~~~~~~~~~~~~~~~~~~~~~e~fp~~~r~t~~g~~~~~g~~~~g~~~p~~~~~l~~~g~~~~~~~~~~~~~~i~  416 (432)
T PRK10406        337 YAAFGLVMCALLIVSFYTSISGILKAEMFPAQVRALGVGLSYAVANALFGGSAEYVALSLKSIGMETAFFWYVTLMAVVA  416 (432)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCccchhhhHHHHHHHHHHHhHHHHHHHHHHHhCCCcHHHHHHHHHHHHH
Confidence            22222222233333444456778899999999999999999987664 2445777666532  22334455555555555


Q ss_pred             hHhhhccccCCCCC
Q 039541          490 GFFVVFLPETIGVT  503 (521)
Q Consensus       490 ~~~~~~~~~~~~~~  503 (521)
                      .+..+++ ++++|+
T Consensus       417 ~~~~~~l-~~~~~~  429 (432)
T PRK10406        417 FLVSLML-HRKGKG  429 (432)
T ss_pred             HHHHHHh-hhcccc
Confidence            5554443 334443

>PRK11663 regulatory protein UhpC; Provisional

Probab=100.00  E-value=3.6e-34  Score=284.35  Aligned_cols=394  Identities=13%  Similarity=0.058  Sum_probs=271.0

Q ss_pred             CChhHHHHHHHHHHHHHHHHHHHhhhhccccCCcccccCCcccccCCccccccccCcceecCCCCcceeeecceeeCCcc
Q 039541           37 LGLPQFIQVILISLLLIFESQQTFISVYTDEEPTWHCINNTTTCSSSSDICTLSKSAWAWDRPSDTTIISDWSLECAGSS  116 (521)
Q Consensus        37 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~p~~~c~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~i~~~~~~~~~~~~  116 (521)
                      .+++++.++....++++...++....+..                                   +|.+.+++|++.++. 
T Consensus        17 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------------------------------~~~~~~~~g~s~~~~-   60 (434)
T PRK11663         17 YRYWRRHILITMYLGYALFYFTRKSFNAA-----------------------------------MPEMLADLGLSRSDI-   60 (434)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHhhhhHHHh-----------------------------------hHHHHHhcCCCHHHH-
Confidence            34566677777778888888888888888                                   899999999999666 


Q ss_pred             ccchhhHHHHHHHHHHhhhhhhhccccCCCCchHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHhhccchhhHhhhhhh
Q 039541          117 ILSGLPSSCFFIGCLLGGLALSTLGDSSSLGRKKLLFLSCFAMSITALATIFANNIWIYSTIRFVAGFFRAPIMTSVIVL  196 (521)
Q Consensus       117 ~~~~~~~s~~~lg~~i~~~~~g~l~dr~~~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~  196 (521)
                         |++.+.+.++..+++++.|+++||  +|||+++.++.++.+++.+++++++|++.+++.|++.|++.|...+...++
T Consensus        61 ---g~~~~~~~~~~~~~~~~~G~l~dr--~g~r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~~~g~~~~~~~~~  135 (434)
T PRK11663         61 ---GLLATLFYITYGVSKFVSGIVSDR--SNARYFMGIGLIATGIINILFGFSSSLWAFALLWVLNAFFQGWGWPVCAKL  135 (434)
T ss_pred             ---HHHHHHHHHHHHHHHhhhhHHHhh--cCCchhHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHccchHHHHH
Confidence               999999999999999999999999  999999999999999999999999999999999999999999999999999


Q ss_pred             eeeeecCcchhHHHHHHHHHHHHHHHHHHHH-HHhhcCCchhHHHHHHHHHHHHHHhhhceeeecchhHHHhcCCHHHHH
Q 039541          197 LSEMVSKRWRGQVVIIGFTFFSFGLVSLPAV-AYLSRGSSWKMLYVWTSIPSIVCCIIIYPFISESPRWLFIHGHEAEAM  275 (521)
Q Consensus       197 i~~~~~~~~rg~~~~~~~~~~~~G~~i~~~i-~~~~~~~~wr~~f~~~~~~~~~~~~~~~~~~~esp~~~~~~~~~~~~~  275 (521)
                      +.|++|+++|++++++.+.+..+|.++++.+ +.+.+.++||+.|++.+++.++..++.++++||+|++...+...++. 
T Consensus       136 ~~~~~~~~~rg~~~~~~~~~~~~g~~~~~~~~~~l~~~~gw~~~f~~~~i~~~~~~~~~~~~~~~~p~~~~~~~~~~~~-  214 (434)
T PRK11663        136 LTAWYSRTERGGWWAIWNTAHNVGGALIPLVVGAIALHYGWRYGMMIAGIIAIVVGLFLCWRLRDKPQAMGLPSVGEWR-  214 (434)
T ss_pred             HHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHcCCCHhhcCCCCccccc-
Confidence            9999999999999999999999999999987 77778889999999988877766545556678877532100000000 


Q ss_pred             HHHHHHhhhcCCCCCCCccccccCCCCCccccCCCcccccccHH-HHhccHHHHHHHHHHHHHHHHHHHHHHhHHhhc-c
Q 039541          276 AVLKRLASRSNYQSDYGLESCCLSNMPPKAKNVIPKLDLYSSLK-DLFNRKWALRRLLTIMALAFGIGVVYFGLLLGV-G  353 (521)
Q Consensus       276 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~  353 (521)
                               .  +      .     .+..++.+.++.+.++.++ ..++++.++...+................|.++ +
T Consensus       215 ---------~--~------~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~  272 (434)
T PRK11663        215 ---------H--D------A-----LELAQQQEGAGLSRKEILTKYVLLNPYIWLLSFSYVLVYVVRAAINDWGNLYMSE  272 (434)
T ss_pred             ---------c--c------c-----cccchhccccCCChhhhHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence                     0  0      0     0000000000000011121 256677665544444333333333333344444 4


Q ss_pred             CCCccHHH---HHHHHHHHhHhHHHHHHHHHhhc--CCchHH-HHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHH
Q 039541          354 NLSFNIYL---SLAFNGLLDIPAYLLTFILIERW--SRKSSI-LTFCILSGTCSAICVAIGDEQEVLQIGLELASFFSAC  427 (521)
Q Consensus       354 ~~~~~~~~---~~~~~~~~~~~~~~~~g~l~dr~--g~~~~~-~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~  427 (521)
                      +.+.+...   ......++++++.++.|++.||+  ++|+.. ........+....+...+..+........+..+++..
T Consensus       273 ~~g~s~~~a~~~~~~~~~~~~~g~~~~g~l~dr~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~  352 (434)
T PRK11663        273 TLGVDLVTANSAVSMFELGGFIGALVAGWGSDKLFNGNRGPMNLIFAAGILLSVGSLWLMPFASYVMQAACFFTIGFFVF  352 (434)
T ss_pred             ccCCCHHHHHHHHHHHHHHHHHHHHHHhhhHHHhccCCccHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHh
Confidence            55665433   33455677889999999999998  333332 2222122222222222222221222222333333322


Q ss_pred             HHHHHHHHhhccccCchhhhhhhHHHHHhhhhhhhHHHHHHHh--hccchhHHHHHHHHHHHHHhHhhh
Q 039541          428 VAFNVLLVFGTELFTTCVRNSTTSLVRQAVNLGAAFSPVLISA--GRQNEFLSFGVFGLVVFCFGFFVV  494 (521)
Q Consensus       428 ~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~p~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~  494 (521)
                      ...........|.+|++.|+++.|+.++..++|.+++|.+.++  ...++...|.+.+++.+++.+...
T Consensus       353 ~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~p~~~g~l~~~~g~~~~f~~~~~~~~~~~~~~~  421 (434)
T PRK11663        353 GPQMLIGMAAAECSHKEAAGAATGFVGLFAYLGAALSGYPLAKVLEIWHWTGFFVVISIAAGISALLLL  421 (434)
T ss_pred             hHHHHHHHHHHhcccHhhHHhHHHHHHHHHHHHHHHhcccHHHHHHhcccHHHHHHHHHHHHHHHHHHH
Confidence            2333445667899999999999999999999999999999986  334567777777777776655443

>PRK12307 putative sialic acid transporter; Provisional

Probab=100.00  E-value=2e-34  Score=286.79  Aligned_cols=361  Identities=16%  Similarity=0.124  Sum_probs=265.1

Q ss_pred             CCChhHHHHHHHHHHHHHHHHHHHhhhhccccCCcccccCCcccccCCccccccccCcceecCCCCcceeeecceeeCCc
Q 039541           36 NLGLPQFIQVILISLLLIFESQQTFISVYTDEEPTWHCINNTTTCSSSSDICTLSKSAWAWDRPSDTTIISDWSLECAGS  115 (521)
Q Consensus        36 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~p~~~c~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~i~~~~~~~~~~~  115 (521)
                      +.+++|+..++.+.++++.++++.....+.                                   .|.+++++|+++.+.
T Consensus        11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------------------------------~~~i~~~~~~s~~~~   55 (426)
T PRK12307         11 EITRPQKNALFSAWLGYVFDGFDFMLIFYI-----------------------------------MYLIKADLGLTDMEG   55 (426)
T ss_pred             cCCHHHHHHHHHHHHHHHHHHhHHHHHHHH-----------------------------------HHHHHHHhCCCHHHH
Confidence            455788888889999999999999999999                                   899999999999776


Q ss_pred             cccchhhHHHHHHHHHHhhhhhhhccccCCCCchHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHhhccchhhHhhhhh
Q 039541          116 SILSGLPSSCFFIGCLLGGLALSTLGDSSSLGRKKLLFLSCFAMSITALATIFANNIWIYSTIRFVAGFFRAPIMTSVIV  195 (521)
Q Consensus       116 ~~~~~~~~s~~~lg~~i~~~~~g~l~dr~~~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~  195 (521)
                          +++.+++.++..+++++.|+++||  +|||+++.++.++.+++.++++++++++.++++|+++|++.|...+....
T Consensus        56 ----~~~~~~~~~~~~l~~~~~g~l~dr--~g~r~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~g~g~~~~~~~~  129 (426)
T PRK12307         56 ----AFLATAAFIGRPFGGALFGLLADK--FGRKPLMMWSIVAYSVGTGLSGLASGVIMLTLSRFIVGMGMAGEYACAST  129 (426)
T ss_pred             ----HHHHHHHHHHHHHHHHHHHHHHHH--hCChHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhHHHHHHH
Confidence                999999999999999999999999  99999999999999999999999999999999999999999999999999


Q ss_pred             heeeeecCcchhHHHHHHHHHHHHHHHHHHHH-HHhhcCCchhHHHHHHHHHHHHHHhhhceeeecchhHHHhcCCHHHH
Q 039541          196 LLSEMVSKRWRGQVVIIGFTFFSFGLVSLPAV-AYLSRGSSWKMLYVWTSIPSIVCCIIIYPFISESPRWLFIHGHEAEA  274 (521)
Q Consensus       196 ~i~~~~~~~~rg~~~~~~~~~~~~G~~i~~~i-~~~~~~~~wr~~f~~~~~~~~~~~~~~~~~~~esp~~~~~~~~~~~~  274 (521)
                      ++.|++|+++|++++++...+..+|.++++.+ +.+.+..+||+.|++..+..++.. ......||++++...+.+    
T Consensus       130 ~~~~~~~~~~r~~~~~~~~~~~~lg~~~~~~l~~~l~~~~~w~~~f~i~~~~~~~~~-~~~~~~p~~~~~~~~~~~----  204 (426)
T PRK12307        130 YAVESWPKHLKSKASAFLVSGFGIGNIIAAYFMPSFAEAYGWRAAFFVGLLPVLLVI-YIRARAPESKEWEEAKLS----  204 (426)
T ss_pred             HHHHhCCHhHhhHhhhHHHHHHhHHHHHHHHHHHHHcccCCHHHHHHHHHHHHHHHH-HHHHHCCCChHHHHhhhh----
Confidence            99999999999999999999999999999877 667777899999988654444333 333334555432110000    


Q ss_pred             HHHHHHHhhhcCCCCCCCccccccCCCCCccccCCCcccccccHHHHhccHHHHHHHHHHHHHHHHH---HHHHHhHHhh
Q 039541          275 MAVLKRLASRSNYQSDYGLESCCLSNMPPKAKNVIPKLDLYSSLKDLFNRKWALRRLLTIMALAFGI---GVVYFGLLLG  351 (521)
Q Consensus       275 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~  351 (521)
                              . .+..                  .+......+.+++++++++.++.............   .......|.+
T Consensus       205 --------~-~~~~------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  257 (426)
T PRK12307        205 --------G-KGKH------------------SQSAWSVFSLSMKGLFNRAQFPLTLCVFIVLFSIFGANWPIFGLLPTY  257 (426)
T ss_pred             --------c-cccc------------------cccchhhhhHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                    0 0000                  00000011135677888877654433322222111   1123344555


Q ss_pred             ccCCCccHHH---HHHHHHHHhHhHHHHHHHHHhhcCCchHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHH--H
Q 039541          352 VGNLSFNIYL---SLAFNGLLDIPAYLLTFILIERWSRKSSILTFCILSGTCSAICVAIGDEQEVLQIGLELASFFS--A  426 (521)
Q Consensus       352 ~~~~~~~~~~---~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~--~  426 (521)
                      +++.+.+...   ......++.+++.++.+++.||++||+.+..+.++..+..+.+.......  ...+..++.+.+  .
T Consensus       258 ~~~~g~~~~~~~~~~~~~~~~~~~g~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~  335 (426)
T PRK12307        258 LAGEGFDTGVVSNLMTAAAFGTVLGNIVWGLCADRIGLKKTFSIGLLMSFLFIFPLFRIPQDN--YLLLGACLFGLMATN  335 (426)
T ss_pred             HHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHcccc--HHHHHHHHHHHHHhc
Confidence            5555655433   23445677889999999999999999988888877766655444333221  111222222222  2


Q ss_pred             HHHHHHHHHhhccccCchhhhhhhHHHHHhhhhhhhHHHHHHHhh
Q 039541          427 CVAFNVLLVFGTELFTTCVRNSTTSLVRQAVNLGAAFSPVLISAG  471 (521)
Q Consensus       427 ~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~p~~~~~~  471 (521)
                      .+..+....++.|.+|++.|+++.|+.+....+|+.++|.+.++.
T Consensus       336 ~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~~~~~gp~~~g~l  380 (426)
T PRK12307        336 VGVGGLVPKFLYDYFPLEVRGLGTGLIYNLAATSGTFNSMAATWL  380 (426)
T ss_pred             ccHhHHHHHHHHHhCcHHHHhhhhhHHHHHHhHHHHHHHHHHHHH
Confidence            223455667789999999999999999999999999999999863

>TIGR00879 SP MFS transporter, sugar porter (SP) family

Probab=100.00  E-value=6.7e-35  Score=295.21  Aligned_cols=420  Identities=21%  Similarity=0.207  Sum_probs=281.2

Q ss_pred             HHHHHHHHHHHHHHHHHHhhhhccccCCcccccCCcccccCCccccccccCcceecCCCCcceeeecceeeCC----ccc
Q 039541           42 FIQVILISLLLIFESQQTFISVYTDEEPTWHCINNTTTCSSSSDICTLSKSAWAWDRPSDTTIISDWSLECAG----SSI  117 (521)
Q Consensus        42 ~~~~~~~~l~~~~~~~~~~~~~~~~~~p~~~c~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~i~~~~~~~~~~----~~~  117 (521)
                      +...+++.++.++..++...+...                                   .|.+..+++.+..+    ...
T Consensus        27 ~~~~~~~~~~~~~~~~~~~~~~~~-----------------------------------~~~~~~~~~~~~~~~~~~~~~   71 (481)
T TIGR00879        27 ALLSLIAAIGGLMFGYDTGVIGGA-----------------------------------LALPAFEFKFTSANSDSYSSS   71 (481)
T ss_pred             HHHHHHHHHHHHhcccccchhhhh-----------------------------------hhcHHHHHhcCCcccCCCChh
Confidence            344444555667777777777777                                   77788887776100    014


Q ss_pred             cchhhHHHHHHHHHHhhhhhhhccccCCCCchHHHHHHHHHHHHHHHHHhcc---ccHHHHHHHHHHhhccchhhHhhhh
Q 039541          118 LSGLPSSCFFIGCLLGGLALSTLGDSSSLGRKKLLFLSCFAMSITALATIFA---NNIWIYSTIRFVAGFFRAPIMTSVI  194 (521)
Q Consensus       118 ~~~~~~s~~~lg~~i~~~~~g~l~dr~~~Grr~~l~~~~~~~~~~~~~~~~~---~~~~~l~~~r~l~G~~~g~~~~~~~  194 (521)
                      +.+++.+++.++..++++++|+++||  +|||++++++.++..++.+++.++   .+++.++++|+++|++.+...+...
T Consensus        72 ~~~~~~~~~~~~~~i~~~~~g~l~d~--~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~  149 (481)
T TIGR00879        72 LWGLVVSIFLVGGFIGALFAGWLSDR--FGRKKSLLIIALLFVIGAILMGLAAFALSVEMLIVGRVLLGIGVGIASALVP  149 (481)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhHhhhh--hhhHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHhhhhHHHhHHH
Confidence            44999999999999999999999999  999999999999999999998554   4566899999999999999999999


Q ss_pred             hheeeeecCcchhHHHHHHHHHHHHHHHHHHHHH---Hh-hcCCchhHHHHHHHHHHHHHHhhhceeeecchhHHHhcCC
Q 039541          195 VLLSEMVSKRWRGQVVIIGFTFFSFGLVSLPAVA---YL-SRGSSWKMLYVWTSIPSIVCCIIIYPFISESPRWLFIHGH  270 (521)
Q Consensus       195 ~~i~~~~~~~~rg~~~~~~~~~~~~G~~i~~~i~---~~-~~~~~wr~~f~~~~~~~~~~~~~~~~~~~esp~~~~~~~~  270 (521)
                      +++.|++|+++|++++++.+.+..+|.++++.++   .. ....+||+.|++.++..++.. +..+++||+|++...+++
T Consensus       150 ~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~w~~~f~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~  228 (481)
T TIGR00879       150 MYLSEIAPKALRGALTSLYQLAITFGILVAYGFGSGKVSLNNTLGWRIPLGLQLIPAGLLF-LGLFFLPESPRWLVGKGR  228 (481)
T ss_pred             HHHHccCChhhhhhhhhHHHHHHHHHHHHHHHHHHHhhcCCCCccHHHHHHHHHHHHHHHH-HHHhcCCCChHHHHHcCC
Confidence            9999999999999999999999999999999987   43 356799999999776666655 666778999988776666


Q ss_pred             HHHHHHHHHHHhhhcCCCCCCCccccccCCCCCccccCCCcccccccHHHHhccH--HHHHHHHHHHHHHHH----HHHH
Q 039541          271 EAEAMAVLKRLASRSNYQSDYGLESCCLSNMPPKAKNVIPKLDLYSSLKDLFNRK--WALRRLLTIMALAFG----IGVV  344 (521)
Q Consensus       271 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~--~~~~~~~~~~~~~~~----~~~~  344 (521)
                      .+++++..++... .+..........+.... ....+....   ...++++++..  ..+.......+.++.    ....
T Consensus       229 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~-~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  303 (481)
T TIGR00879       229 VEEARKSLARLRG-TSGEDKELLDELELIDI-KRSIEKRSV---QPSWGSLFSSTRRIRRRLFLGVVLQWFQQFTGINAI  303 (481)
T ss_pred             hHHHHHHHHHHhC-CCCCcHHHHHHHHHHHH-HHHHHHhhc---cccHHHHHhcCchhHHHHHHHHHHHHHHHHhCCeeh
Confidence            6555444443311 11110000000000000 000000000   01123333321  112222222222221    2233


Q ss_pred             HHhHHhhccCCCccH---HHHHHHHHHHhHhHHHHHHHHHhhcCCchHHHHHHHHHHHHHHHHHh---cCCch-----HH
Q 039541          345 YFGLLLGVGNLSFNI---YLSLAFNGLLDIPAYLLTFILIERWSRKSSILTFCILSGTCSAICVA---IGDEQ-----EV  413 (521)
Q Consensus       345 ~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~i~~~~~~~---~~~~~-----~~  413 (521)
                      .+..+++.++.+.+.   ........++.+++.++.+++.||++||+.+.++..+.+++++++.+   .....     ..
T Consensus       304 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  383 (481)
T TIGR00879       304 MYYSPTIFENAGVSTDHAFLVSIIVGAVNFAFTFVAIFLVDRFGRRPLLLIGAAGMAICLFVLGILGASFVTGSSKSSGN  383 (481)
T ss_pred             HHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHhhcccCCcccchhH
Confidence            445566666666554   33444556778889999999999999999998888877777666652   11110     12


Q ss_pred             HHHHHHHHHHHHHHH-HHHHHHHhhccccCchhhhhhhHHHHHhhhhhhhHHHHHHHhh--ccchhHHHHHHHHHHHHHh
Q 039541          414 LQIGLELASFFSACV-AFNVLLVFGTELFTTCVRNSTTSLVRQAVNLGAAFSPVLISAG--RQNEFLSFGVFGLVVFCFG  490 (521)
Q Consensus       414 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~p~~~~~~--~~~~~~~~~~~~~~~~~~~  490 (521)
                      .......+...+.+. ..+....+..|.+|++.|+++.++.+...++|++++|.+.+..  ..++...|.+.+++++++.
T Consensus       384 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~lg~~i~~~~~~~~~~~~~~~~~f~~~~~~~~~~~  463 (481)
T TIGR00879       384 VAIVFILLFIAFFAMGWGPVPWVIVSEIFPLSLRPKGISIAVAANWLANFIVGFLFPTMLESIGVGGVFIFFGGLNVLGL  463 (481)
T ss_pred             HHHHHHHHHHHHHHccccCeehhhhhccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccceehhHHHHHHHHH
Confidence            222222333333332 3356677889999999999999999999999999999998752  3356667777777777666


Q ss_pred             Hhh-hccccCCCCCC
Q 039541          491 FFV-VFLPETIGVTL  504 (521)
Q Consensus       491 ~~~-~~~~~~~~~~~  504 (521)
                      ++. ++.||+++++.
T Consensus       464 i~~~~~~~~~~~~~~  478 (481)
T TIGR00879       464 IFVYFFLPETKGRTL  478 (481)
T ss_pred             HHHheecccCCCCCh
Confidence            654 45577665543

This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083)

>PRK03545 putative arabinose transporter; Provisional

Probab=100.00  E-value=5.6e-34  Score=279.64  Aligned_cols=341  Identities=14%  Similarity=0.054  Sum_probs=256.0

Q ss_pred             CcceeeecceeeCCccccchhhHHHHHHHHHHhhhhhhhccccCCCCchHHHHHHHHHHHHHHHHHhccccHHHHHHHHH
Q 039541          101 DTTIISDWSLECAGSSILSGLPSSCFFIGCLLGGLALSTLGDSSSLGRKKLLFLSCFAMSITALATIFANNIWIYSTIRF  180 (521)
Q Consensus       101 ~~~i~~~~~~~~~~~~~~~~~~~s~~~lg~~i~~~~~g~l~dr~~~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~  180 (521)
                      +|.+.+++|++.++.    |++.+.+.+++.+++++.|+++||  +|||+++..+.++.+++++++++++|++.++++|+
T Consensus        32 ~~~l~~~~~~s~~~~----g~~~~~~~~~~~~~~~~~g~l~dr--~g~r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~  105 (390)
T PRK03545         32 LSDIAQSFHMQTAQV----GLMLTIYAWVVALMSLPLMLLTSN--VERRKLLIGLFVLFIASHVLSALAWNFTVLLISRI  105 (390)
T ss_pred             hHHHHhHcCCCHHHH----HHHHHHHHHHHHHHHHHHHHHHcC--CChHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHH
Confidence            789999999999777    999999999999999999999999  99999999999999999999999999999999999


Q ss_pred             HhhccchhhHhhhhhheeeeecCcchhHHHHHHHHHHHHHHHHHHHH-HHhhcCCchhHHHHHHHHHHHHHHhhhceeee
Q 039541          181 VAGFFRAPIMTSVIVLLSEMVSKRWRGQVVIIGFTFFSFGLVSLPAV-AYLSRGSSWKMLYVWTSIPSIVCCIIIYPFIS  259 (521)
Q Consensus       181 l~G~~~g~~~~~~~~~i~~~~~~~~rg~~~~~~~~~~~~G~~i~~~i-~~~~~~~~wr~~f~~~~~~~~~~~~~~~~~~~  259 (521)
                      ++|++.+...+...+++.|++|+++|++++++...+.++|.+++|.+ +.+.+..|||+.|++.+++.++..++.+..+|
T Consensus       106 ~~G~~~~~~~~~~~~~i~~~~~~~~r~~~~g~~~~~~~~g~~ig~~l~~~l~~~~gw~~~f~~~~~~~~l~~~~~~~~~~  185 (390)
T PRK03545        106 GIAFAHAIFWSITASLAIRVAPAGKKAQALSLLATGTALAMVLGLPLGRVIGQYLGWRTTFLAIGGGALITLLLLIKLLP  185 (390)
T ss_pred             HHHHHHHHHHHHHHHHHHHhCChhhhhhHHHHHHHHHHHHHHHHhhHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHhCC
Confidence            99999998999999999999999999999999999999999999998 56667789999999999888777655555566


Q ss_pred             cchhHHHhcCCHHHHHHHHHHHhhhcCCCCCCCccccccCCCCCccccCCCcccccccHHHHhccHHHHHHHHHHHHHHH
Q 039541          260 ESPRWLFIHGHEAEAMAVLKRLASRSNYQSDYGLESCCLSNMPPKAKNVIPKLDLYSSLKDLFNRKWALRRLLTIMALAF  339 (521)
Q Consensus       260 esp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~  339 (521)
                      |.|+.     +.++                                         ..+.++++++|.++......+....
T Consensus       186 ~~~~~-----~~~~-----------------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~  219 (390)
T PRK03545        186 LLPSE-----HSGS-----------------------------------------LKSLPLLFRRPALVSLYLLTVVVVT  219 (390)
T ss_pred             CCCCC-----Ccch-----------------------------------------HHHHHHHHhCcHHHHHHHHHHHHHH
Confidence            64320     0000                                         0134567788876654444433333


Q ss_pred             HHH-HHHHhHHhhccCCCccHH---HHHHHHHHHhHhHHHHHHHHHhhcCCchHHHHHHHHHHHHHHHHHhcCCchHHHH
Q 039541          340 GIG-VVYFGLLLGVGNLSFNIY---LSLAFNGLLDIPAYLLTFILIERWSRKSSILTFCILSGTCSAICVAIGDEQEVLQ  415 (521)
Q Consensus       340 ~~~-~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~  415 (521)
                      ... ...+..++..+..+.+..   ......+++.+++.++.+++.||++||++. .+..+..++...+..... +.+..
T Consensus       220 ~~~~~~~~~~~~l~~~~g~s~~~~~~~~~~~~~~~~~g~~~~g~l~dr~~~~~~~-~~~~~~~~~~~~l~~~~~-~~~~~  297 (390)
T PRK03545        220 AHFTAYSYIEPFVQQVAGLSENFATLLLLLFGGAGIIGSVLFSRLGNRHPSGFLL-IAIALLLVCLLLLLPAAN-SEWHL  297 (390)
T ss_pred             HHHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHH-HHHHHHHHHHHHHHHHhc-hHHHH
Confidence            332 223334444444454432   333455678889999999999999987654 444444444433322222 22445


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhccccCchhhhhhhHHHHHhhhhhhhHHHHHHHh--hccchhHHHHHHHHHHHHHhHhh
Q 039541          416 IGLELASFFSACVAFNVLLVFGTELFTTCVRNSTTSLVRQAVNLGAAFSPVLISA--GRQNEFLSFGVFGLVVFCFGFFV  493 (521)
Q Consensus       416 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~p~~~~~--~~~~~~~~~~~~~~~~~~~~~~~  493 (521)
                      .+..++.+++.....+.......+..| +.|++++|+.+....+|..+||.+.|.  ...+....+...+++.+++.+..
T Consensus       298 ~~~~~l~g~~~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~g~~~G~~~~G~~~~~~g~~~~~~~~~~~~~~~~~~~  376 (390)
T PRK03545        298 SVLSIFWGIAIMCIGLAMQVKVLKLAP-DATDVAMALFSGIFNIGIGAGALLGNQVSLHLGLSSIGYVGAALALAALVWS  376 (390)
T ss_pred             HHHHHHHHHHHhcchHHHHHHHHHhCC-CcHHHHHHHHHHHHHHHHHHHHHHHHHHHhccChhHHHHHHHHHHHHHHHHH
Confidence            556666777766555666677777776 577999999999999999999999986  34566777777777777766655


Q ss_pred             hcc
Q 039541          494 VFL  496 (521)
Q Consensus       494 ~~~  496 (521)
                      ...
T Consensus       377 ~~~  379 (390)
T PRK03545        377 ILI  379 (390)
T ss_pred             HHH
Confidence            443

>PRK09952 shikimate transporter; Provisional

Probab=100.00  E-value=1.9e-33  Score=279.08  Aligned_cols=379  Identities=14%  Similarity=0.132  Sum_probs=261.1

Q ss_pred             hHHHHHHHHHHHHHHHHHHHhhhhccccCCcccccCCcccccCCccccccccCcceecCCCCcc-eeeec--ceeeCCcc
Q 039541           40 PQFIQVILISLLLIFESQQTFISVYTDEEPTWHCINNTTTCSSSSDICTLSKSAWAWDRPSDTT-IISDW--SLECAGSS  116 (521)
Q Consensus        40 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~p~~~c~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~-i~~~~--~~~~~~~~  116 (521)
                      +++..+....++.+++.+|...+++.                                   .|. +.+++  +.++. . 
T Consensus        19 ~~~~~~~~~~~~~~~~~~d~~~~~~~-----------------------------------~~~~~~~~~~~~~~~~-~-   61 (438)
T PRK09952         19 RARRAALGSFAGAVVDWYDFLLYGIT-----------------------------------AALVFNREFFPQVSPA-M-   61 (438)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHH-----------------------------------HHHHHHHhcCCCCCcH-H-
Confidence            34567778888999999999998877                                   553 44444  45543 2 


Q ss_pred             ccchhhH-----HHHHHHHHHhhhhhhhccccCCCCchHHHHHHHHHHHHHHHHHhccccHH--------HHHHHHHHhh
Q 039541          117 ILSGLPS-----SCFFIGCLLGGLALSTLGDSSSLGRKKLLFLSCFAMSITALATIFANNIW--------IYSTIRFVAG  183 (521)
Q Consensus       117 ~~~~~~~-----s~~~lg~~i~~~~~g~l~dr~~~Grr~~l~~~~~~~~~~~~~~~~~~~~~--------~l~~~r~l~G  183 (521)
                         +++.     ++.+++..+++++.|+++||  +|||++++++.++++++++++++++|+.        .+++.|+++|
T Consensus        62 ---~~~~~~~~~~~~~~~~~~g~~~~G~l~Dr--~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~G  136 (438)
T PRK09952         62 ---GTLAAFATFGVGFLFRPLGGVVFGHFGDR--LGRKRMLMLTVWMMGIATALIGLLPSFSTIGWWAPVLLVTLRAIQG  136 (438)
T ss_pred             ---HHHHHHHHHHHHHHHHhhHHHHHHHHHHh--hccHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHH
Confidence               4443     45667788999999999999  9999999999999999999999999987        5889999999


Q ss_pred             ccchhhHhhhhhheeeeecCcchhHHHHHHHHHHHHHHHHHHHH-HHhh--------cCCchhHHHHHHHHHHHHHHhhh
Q 039541          184 FFRAPIMTSVIVLLSEMVSKRWRGQVVIIGFTFFSFGLVSLPAV-AYLS--------RGSSWKMLYVWTSIPSIVCCIII  254 (521)
Q Consensus       184 ~~~g~~~~~~~~~i~~~~~~~~rg~~~~~~~~~~~~G~~i~~~i-~~~~--------~~~~wr~~f~~~~~~~~~~~~~~  254 (521)
                      ++.|..++....++.|++|+++|++..+..+.+..+|.+++..+ ..+.        ..+|||++|++.+++.++.. ..
T Consensus       137 ~~~g~~~~~~~~~~~e~~p~~~rg~~~~~~~~g~~~G~~l~~~~~~~l~~~~~~~~~~~~gWr~~f~~~~~~~l~~~-~l  215 (438)
T PRK09952        137 FAVGGEWGGAALLAVESAPKNKKAFYSSGVQVGYGVGLLLSTGLVSLISMMTTDEQFLSWGWRIPFLFSIVLVLIAL-WV  215 (438)
T ss_pred             hhhcccHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHhhccChHHHHHHHHHHHHHHH-HH
Confidence            99999999999999999999999999999999999999988766 3332        25799999999888766544 55


Q ss_pred             ceeeecchhHHHhcCCHHHHHHHHHHHhhhcCCCCCCCccccccCCCCCccccCCCcccccccHHHHhccHHHHHHHHHH
Q 039541          255 YPFISESPRWLFIHGHEAEAMAVLKRLASRSNYQSDYGLESCCLSNMPPKAKNVIPKLDLYSSLKDLFNRKWALRRLLTI  334 (521)
Q Consensus       255 ~~~~~esp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~  334 (521)
                      ...+||+|++...+++.++           .                       +++   ....+.++++++.+...+..
T Consensus       216 ~~~~~es~~~~~~~~~~~~-----------~-----------------------~~~---~~~~~~l~~~~~~~~~~~~~  258 (438)
T PRK09952        216 RNGMEESAEFEQQQHEQAA-----------A-----------------------KKR---IPVIEALLRHPGAFLKIIAL  258 (438)
T ss_pred             HHhCCCChhHHHHHhhccc-----------c-----------------------ccc---CCHHHHHHHchHHHHHHHHH
Confidence            5567888765321110000           0                       000   01123355666544433222


Q ss_pred             -HHHHHHHHH-HHHhHHhhccCCCccHH---HHHHHHHHHhHhHHHHHHHHHhhcCCchHHHHHHHHHHHHHHHHHhc--
Q 039541          335 -MALAFGIGV-VYFGLLLGVGNLSFNIY---LSLAFNGLLDIPAYLLTFILIERWSRKSSILTFCILSGTCSAICVAI--  407 (521)
Q Consensus       335 -~~~~~~~~~-~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~i~~~~~~~~--  407 (521)
                       +...+.... ..+..++..+..+.+..   ....+.++..+++.++.|+++||+|||+.+..+.++..++.+.+...  
T Consensus       259 ~~~~~~~~~~~~~~~~~y~~~~~g~s~~~~~~~~~~~g~~~~i~~~~~g~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~  338 (438)
T PRK09952        259 RLCELLTMYIVTAFALNYSTQNLGLPRELFLNIGLLVGGLSCLTIPCFAWLADRFGRRRVYITGALIGTLSAFPFFMALE  338 (438)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHH
Confidence             111222222 22333333344454433   22334456667788899999999999998887776655544333221  


Q ss_pred             CCchHHHHHHHHHHHHHHHHHHHHHHHHhhccccCchhhhhhhHHHHHhh-hhhhhHHHHHHHhh---c-cchhHHHHHH
Q 039541          408 GDEQEVLQIGLELASFFSACVAFNVLLVFGTELFTTCVRNSTTSLVRQAV-NLGAAFSPVLISAG---R-QNEFLSFGVF  482 (521)
Q Consensus       408 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~-~~g~~~~p~~~~~~---~-~~~~~~~~~~  482 (521)
                      .....+......++.+++.+...+..+.+..|.+|++.|+++.++.+... .+|+.++|.+.++.   . .++...+...
T Consensus       339 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~e~~p~~~r~tg~g~~~~~~~~lgg~~~p~i~g~l~~~~~~~~~~~~~~~  418 (438)
T PRK09952        339 AQSIFWIVFFSIMLANIAHDMVVCVQQPMFTEMFGASYRYSGAGVGYQVASVVGGGFTPFIAAALVTYFGGSWHSVAIYL  418 (438)
T ss_pred             cCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCcchhHHHHhHHHHHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHH
Confidence            11211233344455567777777888999999999999999999977665 47889999998863   1 2345566667


Q ss_pred             HHHHHHHhHhhhcccc
Q 039541          483 GLVVFCFGFFVVFLPE  498 (521)
Q Consensus       483 ~~~~~~~~~~~~~~~~  498 (521)
                      +++.+++.+..+.+++
T Consensus       419 ~~~~~i~~v~~~~~~~  434 (438)
T PRK09952        419 LAGCLISAMTALLMKD  434 (438)
T ss_pred             HHHHHHHHHHHHHccc
Confidence            7777777666666655

>KOG0254 consensus Predicted transporter (major facilitator superfamily) [General function prediction only]

Probab=100.00  E-value=7.5e-34  Score=287.15  Aligned_cols=386  Identities=24%  Similarity=0.270  Sum_probs=281.2

Q ss_pred             hhhHHHHHHHHHHhhhhhhhccccCCCCchHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHhhccchhhHhhhhhheee
Q 039541          120 GLPSSCFFIGCLLGGLALSTLGDSSSLGRKKLLFLSCFAMSITALATIFANNIWIYSTIRFVAGFFRAPIMTSVIVLLSE  199 (521)
Q Consensus       120 ~~~~s~~~lg~~i~~~~~g~l~dr~~~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~  199 (521)
                      +|+.+.+.++..++++++|+++|+  +|||+.++++.+++.++.+++++++|+++++++|+++|+|.|+.....+.|++|
T Consensus        92 s~~~s~~~lga~~g~l~~g~l~d~--~GRk~~l~~~~~~~~iG~ii~~~a~~~~~l~~GR~l~G~g~G~~~~~~piy~sE  169 (513)
T KOG0254|consen   92 GLLTSILNLGALVGSLLAGRLGDR--IGRKKTLLLAVVLFLIGAIIIALAPSWYQLIVGRILTGLGVGGASVLAPVYISE  169 (513)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH--hhhHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhccchhhhhhcchhhHhh
Confidence            899999999999999999999999  999999999999999999999999999999999999999999999999999999


Q ss_pred             eecCcchhHHHHHHHHHHHHHHHHHHHHHHhhcCC--chhHHHHHHHHHHHHHHhhhceeeecchhHHHhcCCHHHHHHH
Q 039541          200 MVSKRWRGQVVIIGFTFFSFGLVSLPAVAYLSRGS--SWKMLYVWTSIPSIVCCIIIYPFISESPRWLFIHGHEAEAMAV  277 (521)
Q Consensus       200 ~~~~~~rg~~~~~~~~~~~~G~~i~~~i~~~~~~~--~wr~~f~~~~~~~~~~~~~~~~~~~esp~~~~~~~~~~~~~~~  277 (521)
                      +.|++.||...+..+....+|..++..++....+.  +||..+.+..+++++..+. .+++||+|+|+.++++.+++++.
T Consensus       170 iap~~~RG~l~~~~~l~~~~Gi~~~~~~~~~~~~~~~~Wr~~~~~~~i~~~~~~~~-~~~~pesp~~L~~~g~~~~a~~~  248 (513)
T KOG0254|consen  170 IAPAHIRGTLVSLYQLFITIGILLGYCINYGTSKVYAGWRIPLGLALIPAVILALG-MLFLPESPRWLIEKGRLEEAKRS  248 (513)
T ss_pred             cCChhhhHHHHHHHHHHHHHHHHHHHHHhhhhccCCccHHHHHHHHHHHHHHHHHH-HHhCCCChHHHHHcCChHHHHHH
Confidence            99999999999999999999999998888777654  8999999999999999844 89999999999999999999999


Q ss_pred             HHHHhhhcCCCCCCCccccccCCCCCccccCCCcccccccHHHHhccHHHHHHHHHHHHHHHHH-----HHHHHhHHhhc
Q 039541          278 LKRLASRSNYQSDYGLESCCLSNMPPKAKNVIPKLDLYSSLKDLFNRKWALRRLLTIMALAFGI-----GVVYFGLLLGV  352 (521)
Q Consensus       278 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~  352 (521)
                      ++++.. .+.. +   ...+.+++..+.............++++++ |..++..+........+     +...|+.+..+
T Consensus       249 l~~l~g-~~~~-~---~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~~i~~~l~~fqq~tG~~~~~~Y~~~if  322 (513)
T KOG0254|consen  249 LKRLRG-LSPE-D---VEVELELLKIKLLVEAEVAEGKASWGELFS-PKVRKRLIIGLLLQLFQQLTGINYVFYYSTTIF  322 (513)
T ss_pred             HHHHhC-CCCc-c---hHHHHHHHHHHHHHhhhcccccccHHHhcC-cchHHHHHHHHHHHHHHHHhCCceEEeehHHHH
Confidence            998832 2211 1   111111111000000000000113455555 44445444443333322     22334445556


Q ss_pred             cCCCcc-H-HHHHHHHHHHhHhHHHHHHHHHhhcCCchHHHHHHHHHHHHHHHHHhcCCc---------h-HHHHHHHHH
Q 039541          353 GNLSFN-I-YLSLAFNGLLDIPAYLLTFILIERWSRKSSILTFCILSGTCSAICVAIGDE---------Q-EVLQIGLEL  420 (521)
Q Consensus       353 ~~~~~~-~-~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~i~~~~~~~~~~~---------~-~~~~~~~~~  420 (521)
                      +..+.+ . .....+.++..+++.+++.++.||+|||++++.+...+.++++++......         . .+..++..+
T Consensus       323 ~~~g~~~~~~~~~~~~~~v~~~~t~~~~~lvd~~gRr~lll~s~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  402 (513)
T KOG0254|consen  323 KSAGLKSDTFLASIILGVVNFLGTLVATYLVDRFGRRKLLLFGAAGMSICLVILAVVGVFALYYPNSSKGAGWLAIVFLC  402 (513)
T ss_pred             HhcCCCCchHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHhHHHHHHHHHHHHHHHHHhccCCCcccchhHHHHHHHH
Confidence            655543 2 555667778888899999999999999999999999999988877654211         1 123333333


Q ss_pred             HHHHH-HHHHHHHHHHhhccccCchhhhhhhHHHHHhhhhhhhHHHHHHHhh--ccchhHHHHHHHHHHHHHhH--hhhc
Q 039541          421 ASFFS-ACVAFNVLLVFGTELFTTCVRNSTTSLVRQAVNLGAAFSPVLISAG--RQNEFLSFGVFGLVVFCFGF--FVVF  495 (521)
Q Consensus       421 ~~~~~-~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~p~~~~~~--~~~~~~~~~~~~~~~~~~~~--~~~~  495 (521)
                      +.... ..+..++.+.+.+|.+|.+.|+.+.++....+.+.+++-.......  ..+....|..++.++.+..+  .+++
T Consensus       403 ~~v~~f~~g~g~v~w~~~sEifp~~~r~~~~s~~~~~n~~~~~~v~~~~~~~~~~~~~~~~f~~f~~~~~~~~~~fv~~~  482 (513)
T KOG0254|consen  403 LFIFSFAIGWGPVPWVIVSEIFPLRLRSKGASLAVAVNWLWNFLISFFFPFITEALGIGGTFGYFGGICLLSLIIFVFFF  482 (513)
T ss_pred             HHHHHHhcccccchhhhhhccCcHhHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHheEE
Confidence            33322 3334468888999999999999999999999988776554443321  11124445555444444444  5678


Q ss_pred             cccCCCCCCCcchHhhhcc
Q 039541          496 LPETIGVTLCDTLDQQEYF  514 (521)
Q Consensus       496 ~~~~~~~~~~~~~~~~~~~  514 (521)
                      +||+++++.++.++..++.
T Consensus       483 ~pETkg~sleei~~~~~~~  501 (513)
T KOG0254|consen  483 VPETKGLTLEEINELFEEG  501 (513)
T ss_pred             cccCCCCcHHHHHHHHHcC
Confidence            8999999988877655443

>TIGR00890 2A0111 Oxalate/Formate Antiporter

Probab=100.00  E-value=7.8e-34  Score=278.03  Aligned_cols=344  Identities=12%  Similarity=0.050  Sum_probs=258.5

Q ss_pred             CcceeeecceeeCCccccchhhHHHHHHHHHHhhhhhhhccccCCCCchHHHHHHHHHHHHHHHHHhccccHHHHHHHHH
Q 039541          101 DTTIISDWSLECAGSSILSGLPSSCFFIGCLLGGLALSTLGDSSSLGRKKLLFLSCFAMSITALATIFANNIWIYSTIRF  180 (521)
Q Consensus       101 ~~~i~~~~~~~~~~~~~~~~~~~s~~~lg~~i~~~~~g~l~dr~~~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~  180 (521)
                      .|.+.+++|++.++.    |++.+++.++..+++++.|+++||  +|||+++.++.++.+++.+++++++|++.+++.|+
T Consensus        26 ~~~~~~~~~~s~~~~----g~~~s~~~~~~~~~~~~~G~l~d~--~G~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   99 (377)
T TIGR00890        26 APPLGRYFGVGVTAV----AIWFTLLLIGLAMSMPVGGLLADK--FGPRAVAMLGGILYGLGFTFYAIADSLAALYLTYG   99 (377)
T ss_pred             HHHHHHHhCCCHHHH----HHHHHHHHHHHHHHhhhhHHHHHH--cCccchhHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            899999999999766    999999999999999999999999  99999999999999999999999999999999999


Q ss_pred             HhhccchhhHhhhhhheeeeecCcchhHHHHHHHHHHHHHHHHH-HHHHHhhcCCchhHHHHHHHHHHHHHHhhhceeee
Q 039541          181 VAGFFRAPIMTSVIVLLSEMVSKRWRGQVVIIGFTFFSFGLVSL-PAVAYLSRGSSWKMLYVWTSIPSIVCCIIIYPFIS  259 (521)
Q Consensus       181 l~G~~~g~~~~~~~~~i~~~~~~~~rg~~~~~~~~~~~~G~~i~-~~i~~~~~~~~wr~~f~~~~~~~~~~~~~~~~~~~  259 (521)
                      +.|++.+...+.....+.|++| ++|+++.++...+.++|.+++ |+.+.+.+..+||+.|++.+++.++..+..+++++
T Consensus       100 ~~g~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~  178 (377)
T TIGR00890       100 LASAGVGIAYGIALNTAVKWFP-DKRGLASGIIIGGYGLGSFILSPLITSVINLEGVPAAFIYMGIIFLLVIVLGAFLIG  178 (377)
T ss_pred             HHhHHHHHHHHhHHHHHHHHcC-cccHHHHHHHHHhcchhHhHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHhee
Confidence            9999999888888888899987 679999999999999998765 45577777789999999999888887756666666


Q ss_pred             cchhHHHhcCCHHHHHHHHHHHhhhcCCCCCCCccccccCCCCCccccCCCcccccccHHHHhccHHHHHHHHHHHHHHH
Q 039541          260 ESPRWLFIHGHEAEAMAVLKRLASRSNYQSDYGLESCCLSNMPPKAKNVIPKLDLYSSLKDLFNRKWALRRLLTIMALAF  339 (521)
Q Consensus       260 esp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~  339 (521)
                      ++|+...   +              ++.+                   .   .+...+.++.++++.++......+...+
T Consensus       179 ~~~~~~~---~--------------~~~~-------------------~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~  219 (377)
T TIGR00890       179 YPPGQLI---K--------------TNIE-------------------V---SVKDYTVWEMLRTPQFWVLYLSFFLNAV  219 (377)
T ss_pred             cCchhcc---c--------------cCcc-------------------c---chhhhhHHHHHcCccHHHHHHHHHHHhH
Confidence            5442100   0              0000                   0   0001245667787776544433333322


Q ss_pred             HHHHHHHhHHhhccCCCccHH---HHHHHHHHHhHhHHHHHHHHHhhcCCchHHHHHHHHHHHHHHHHHhcCCchHHHHH
Q 039541          340 GIGVVYFGLLLGVGNLSFNIY---LSLAFNGLLDIPAYLLTFILIERWSRKSSILTFCILSGTCSAICVAIGDEQEVLQI  416 (521)
Q Consensus       340 ~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~  416 (521)
                      .........+.+.++.+.+..   .......+..++++++.+++.||++||+.+.++..+.+++.+.+...+........
T Consensus       220 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  299 (377)
T TIGR00890       220 SGLLLIGLYKPYGQSLGLSDGFLVLAVSISSIFNGGGRPFLGALSDKIGRQKTMSIVFGISAVGMAAMLFIPMLNDVLFL  299 (377)
T ss_pred             HHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHcccchhHHHH
Confidence            222222222333445554432   33455667788899999999999999999988888888887766655433222333


Q ss_pred             HHHHHHHHHHHHHHHHHHHhhccccCchhhhhhhHHHHHhhhhhhhHHHHHHHhh--ccchhHHHHHHHHHHHHHh
Q 039541          417 GLELASFFSACVAFNVLLVFGTELFTTCVRNSTTSLVRQAVNLGAAFSPVLISAG--RQNEFLSFGVFGLVVFCFG  490 (521)
Q Consensus       417 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~p~~~~~~--~~~~~~~~~~~~~~~~~~~  490 (521)
                      ...++.+++.+...+....+..|.+|+++|+++.|+.+....+|..++|.+.+..  ..++...|.+.+++.+++.
T Consensus       300 ~~~~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~f~~~~~~~~~~~  375 (377)
T TIGR00890       300 ATVALVFFTWGGTISLFPSLVSDIFGPANSAANYGFLYTAKAVAGIFGGLIASHALTEIGFEYTFIVTGAFALTSL  375 (377)
T ss_pred             HHHHHHHHHhccchhccHHHHHHHhhhhhhhhHhHHHHHHHHHHHHHHHHHHHHHHhhhchhhHHHHHHHHHHHhc
Confidence            4455566666666677778899999999999999999999999999999999863  3456667777666665543

>PRK11273 glpT sn-glycerol-3-phosphate transporter; Provisional

Probab=100.00  E-value=1.1e-32  Score=275.12  Aligned_cols=401  Identities=9%  Similarity=0.020  Sum_probs=266.7

Q ss_pred             ChhHHHHHHHHHHHHHHHHHHHhhhhccccCCcccccCCcccccCCccccccccCcceecCCCCcceeeecceeeCCccc
Q 039541           38 GLPQFIQVILISLLLIFESQQTFISVYTDEEPTWHCINNTTTCSSSSDICTLSKSAWAWDRPSDTTIISDWSLECAGSSI  117 (521)
Q Consensus        38 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~p~~~c~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~  117 (521)
                      ++++|.++..+++.......+....++.                                   .|.+.++ |++.++.  
T Consensus        24 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------------------------------~p~l~~~-g~s~~~~--   65 (452)
T PRK11273         24 RRLRWQIFLGIFFGYAAYYLVRKNFALA-----------------------------------MPYLVEQ-GFSRGDL--   65 (452)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHh-----------------------------------hHHHHHc-CCCHHHH--
Confidence            3456666666666666666676667777                                   7888888 9999777  


Q ss_pred             cchhhHHHHHHHHHHhhhhhhhccccCCCCchHHHHHHHHHHHHHHHHHhcc----ccHHHHHHHHHHhhccchhhHhhh
Q 039541          118 LSGLPSSCFFIGCLLGGLALSTLGDSSSLGRKKLLFLSCFAMSITALATIFA----NNIWIYSTIRFVAGFFRAPIMTSV  193 (521)
Q Consensus       118 ~~~~~~s~~~lg~~i~~~~~g~l~dr~~~Grr~~l~~~~~~~~~~~~~~~~~----~~~~~l~~~r~l~G~~~g~~~~~~  193 (521)
                        |++.+.+.++..++++++|+++||  +|||++++++.++.+++.++++++    .+++.+++.|++.|++.|...+..
T Consensus        66 --g~~~~~~~i~~~~~~~~~G~l~Dr--~g~k~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~gi~~g~~~~~~  141 (452)
T PRK11273         66 --GFALSGISIAYGFSKFIMGSVSDR--SNPRVFLPAGLILAAAVMLFMGFVPWATSSIAVMFVLLFLCGWFQGMGWPPC  141 (452)
T ss_pred             --HHHHHHHHHHHHHHHhhhhhhhhc--cCCchhHHHHHHHHHHHHHHHHhhhcccccHHHHHHHHHHHHHHHhccchHH
Confidence              999999999999999999999999  999999999999999999988876    378899999999999999888888


Q ss_pred             hhheeeeecCcchhHHHHHHHHHHHHHH-HHHHHHH-HhhcCCchhHHHHHHHHHHHHHHhhhceeeecchhHHHhcCCH
Q 039541          194 IVLLSEMVSKRWRGQVVIIGFTFFSFGL-VSLPAVA-YLSRGSSWKMLYVWTSIPSIVCCIIIYPFISESPRWLFIHGHE  271 (521)
Q Consensus       194 ~~~i~~~~~~~~rg~~~~~~~~~~~~G~-~i~~~i~-~~~~~~~wr~~f~~~~~~~~~~~~~~~~~~~esp~~~~~~~~~  271 (521)
                      ...+.|++|+++|++++++++.+.++|. +.+|+++ ......+||+.|++.+++.++..++.++++||+|+....+. .
T Consensus       142 ~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~gw~~~f~i~~~~~~~~~~l~~~~~~~~~~~~~~~~-~  220 (452)
T PRK11273        142 GRTMVHWWSQKERGGIVSVWNCAHNVGGGLPPLLFLLGMAWFNDWHAALYMPAFAAILVALFAFAMMRDTPQSCGLPP-I  220 (452)
T ss_pred             HHHHHHhCChHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHccCCHhhcCCCC-h
Confidence            8889999999999999999999999886 4566653 33334599999999988877776577777888875321111 1


Q ss_pred             HHHHHHHHHHhhhcCCCCCCCccccccCCCCCccccCCCccccccc-HHHHhccHHHHHHHHHHHHHHHHHHHHHHhHHh
Q 039541          272 AEAMAVLKRLASRSNYQSDYGLESCCLSNMPPKAKNVIPKLDLYSS-LKDLFNRKWALRRLLTIMALAFGIGVVYFGLLL  350 (521)
Q Consensus       272 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  350 (521)
                      ++.+       + +...      .       .+++++ ++.+..+. .+.+++++.++...+...+............|.
T Consensus       221 ~~~~-------~-~~~~------~-------~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~P~  278 (452)
T PRK11273        221 EEYK-------N-DYPD------D-------YNEKHE-QELTAKQIFMQYVLPNKLLWYIAIANVFVYLLRYGILDWSPT  278 (452)
T ss_pred             hhhh-------h-cccc------c-------cccccC-CCccHHHHHHHHHHcChHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            1100       0 0000      0       000000 00000111 233677887776665555555444444444555


Q ss_pred             hccC-CCccHHH---HHHHHHHHhHhHHHHHHHHHhhc--CCchHH-HHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHH
Q 039541          351 GVGN-LSFNIYL---SLAFNGLLDIPAYLLTFILIERW--SRKSSI-LTFCILSGTCSAICVAIGDEQEVLQIGLELASF  423 (521)
Q Consensus       351 ~~~~-~~~~~~~---~~~~~~~~~~~~~~~~g~l~dr~--g~~~~~-~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~  423 (521)
                      ++++ .+.+...   ...+..++.+++.++.|+++||+  +||+.. .....+..++.+.+......+.+...+..++.+
T Consensus       279 ~l~~~~g~s~~~~~~~~~~~~~~~~~g~~~~G~l~dr~~~~r~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~g  358 (452)
T PRK11273        279 YLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLVTIATIVYWLNPAGNPTVDMACMIVIG  358 (452)
T ss_pred             HHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCcchHHHHHHHHHHHHHHHHHHhcccChHHHHHHHHHHH
Confidence            5544 4544332   33445577788999999999999  444432 222233333333332222222222333344444


Q ss_pred             HHHHHHHHHHHHhhccccCchhhhhhhHHHHHhhhhhhhH-HHHHHHh--hccchhHHHHHHHHHHHHHhHhhhccccCC
Q 039541          424 FSACVAFNVLLVFGTELFTTCVRNSTTSLVRQAVNLGAAF-SPVLISA--GRQNEFLSFGVFGLVVFCFGFFVVFLPETI  500 (521)
Q Consensus       424 ~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~-~p~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  500 (521)
                      +...........+..|.+|++.||+++|+.+....+|+.+ +|.+.|.  +..++...|.+++++++++++....+...+
T Consensus       359 ~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~~g~~v~g~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~  438 (452)
T PRK11273        359 FLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFGWDGGFMVMIGGSILAVILLIVVMIGE  438 (452)
T ss_pred             HHHHhHHHHHHHHHHHHcChhhhhhHHHHHHHHHHHHHHHhhhhhHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHhccc
Confidence            4433333344556789999999999999999988888664 7888875  334577778777777777766655544433


Q ss_pred             CCC
Q 039541          501 GVT  503 (521)
Q Consensus       501 ~~~  503 (521)
                      +|+
T Consensus       439 ~~~  441 (452)
T PRK11273        439 KRH  441 (452)
T ss_pred             cch
Confidence            333

>PRK14995 methyl viologen resistance protein SmvA; Provisional

Probab=100.00  E-value=8.9e-33  Score=278.55  Aligned_cols=385  Identities=13%  Similarity=0.027  Sum_probs=282.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHhhhhccccCCcccccCCcccccCCccccccccCcceecCCCCcceeeecceeeCCccccch
Q 039541           41 QFIQVILISLLLIFESQQTFISVYTDEEPTWHCINNTTTCSSSSDICTLSKSAWAWDRPSDTTIISDWSLECAGSSILSG  120 (521)
Q Consensus        41 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~p~~~c~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~  120 (521)
                      +|.++..++++.++...|..+++..                                   +|.+.+|+|.+.++.    +
T Consensus         4 ~~~~~~~~~~~~~~~~ld~tiv~~a-----------------------------------~p~i~~~l~~s~~~~----~   44 (495)
T PRK14995          4 QWLTLVIIVLVYIPVAIDATVLHVA-----------------------------------APTLSMTLGASGNEL----L   44 (495)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHH-----------------------------------HHHHHHHhCCCHhHH----H
Confidence            5778889999999999999999999                                   999999999999777    9


Q ss_pred             hhHHHHHHHHHHhhhhhhhccccCCCCchHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHhhccchhhHhhhhhheeee
Q 039541          121 LPSSCFFIGCLLGGLALSTLGDSSSLGRKKLLFLSCFAMSITALATIFANNIWIYSTIRFVAGFFRAPIMTSVIVLLSEM  200 (521)
Q Consensus       121 ~~~s~~~lg~~i~~~~~g~l~dr~~~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~  200 (521)
                      |+.+.|.++..++++++|+++||  +|||++++++.++++++++++++++|++.++++|+++|+|.+...+.....+.+.
T Consensus        45 ~~~~~~~l~~~~~~~~~G~l~D~--~Grk~~l~~~~~~~~~~~~~~~~a~~~~~li~~r~l~G~g~~~~~~~~~~~l~~~  122 (495)
T PRK14995         45 WIIDIYSLVMAGMVLPMGALGDR--IGFKRLLMLGGTLFGLASLAAAFSPTASWLIATRALLAIGAAMIVPATLAGIRAT  122 (495)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHH--hccHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999  9999999999999999999999999999999999999999999988888878776


Q ss_pred             e-cCcchhHHHHHHHHHHHHHHHHHHHH-HHhhcCCchhHHHHHHHHHHHHHHhhhceeeecchhHHHhcCCHHHHHHHH
Q 039541          201 V-SKRWRGQVVIIGFTFFSFGLVSLPAV-AYLSRGSSWKMLYVWTSIPSIVCCIIIYPFISESPRWLFIHGHEAEAMAVL  278 (521)
Q Consensus       201 ~-~~~~rg~~~~~~~~~~~~G~~i~~~i-~~~~~~~~wr~~f~~~~~~~~~~~~~~~~~~~esp~~~~~~~~~~~~~~~~  278 (521)
                      + |+++|+++++++.....+|..+||.+ +.+.++.+||+.|++...+.++..++..+++||+|+..  +++.+......
T Consensus       123 ~~~~~~r~~~~g~~~~~~~~g~~~gp~lgg~l~~~~gwr~~f~i~~~~~~~~~~l~~~~l~~~~~~~--~~~~d~~g~~~  200 (495)
T PRK14995        123 FTEEKQRNMALGVWAAVGSGGAAFGPLVGGILLEHFYWGSVFLINVPIVLVVMGLTARYVPRQAGRR--DQPLNLGHALM  200 (495)
T ss_pred             cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCChHHHHHHHHHHHHHHHHHHHHhCCCCCCCC--CCCCChHhHHH
Confidence            5 67999999999999999999999999 67778889999999998888777766667778765321  11111111000


Q ss_pred             ------H-HHhhhcCCCCCCCcc-cccc------CCCCCccccCCCcccccccHHHHhccHHHHHHHHHHHHHHHHHHHH
Q 039541          279 ------K-RLASRSNYQSDYGLE-SCCL------SNMPPKAKNVIPKLDLYSSLKDLFNRKWALRRLLTIMALAFGIGVV  344 (521)
Q Consensus       279 ------~-~~~~~~~~~~~~~~~-~~~~------~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~  344 (521)
                            . .... .+...+.... ....      ..+......+.+..+.. -..++++++.++...+..+.........
T Consensus       201 ~~~~~~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~f~~~e~~~~~p~-~~~~lf~~~~~~~~~~~~~~~~~~~~~~  278 (495)
T PRK14995        201 LIVAILLLVYSA-KTALKGFLSLWVTSLTLLTGALLLGLFIRTQLAASRPM-IDMRLFTHRIILSGVVMAMTAMITLVGF  278 (495)
T ss_pred             HHHHHHHHHHHH-HhccccCCchHHHHHHHHHHHHHHHHHHHHHhcCCCCC-cCHHHhCCcccHHHHHHHHHHHHHHHHH
Confidence                  0 0000 0000000000 0000      00000000000000111 1246788887666555555554444444


Q ss_pred             HHhHHhhccC-CCccHHHH---HHHHHHHhHhHHHHHHHHHhhcCCchHHHHHHHHHHHHHHHHHhcCC-chHHHHHHHH
Q 039541          345 YFGLLLGVGN-LSFNIYLS---LAFNGLLDIPAYLLTFILIERWSRKSSILTFCILSGTCSAICVAIGD-EQEVLQIGLE  419 (521)
Q Consensus       345 ~~~~~~~~~~-~~~~~~~~---~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~i~~~~~~~~~~-~~~~~~~~~~  419 (521)
                      .+..|.+++. .+.++...   .....++..++.++.|++.||+|+|+.+..+..+.+++...+..... .+.+......
T Consensus       279 ~~~~~~~lq~v~g~s~~~ag~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~  358 (495)
T PRK14995        279 ELLMAQELQFVHGLSPLEAGMFMLPVMVASGFSGPIAGILVSRLGLRLVATGGMALSALSFYGLAMTDFSTQQWQAWGLM  358 (495)
T ss_pred             HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHH
Confidence            4455555543 46555433   34455777889999999999999999888888887777665544332 2224455677


Q ss_pred             HHHHHHHHHHHHHHHHhhccccCchhhhhhhHHHHHhhhhhhhHHHHHHHh
Q 039541          420 LASFFSACVAFNVLLVFGTELFTTCVRNSTTSLVRQAVNLGAAFSPVLISA  470 (521)
Q Consensus       420 ~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~p~~~~~  470 (521)
                      ++.|++.+...+.......+..|++.++.+.++.++...+|+.+|+.+.+.
T Consensus       359 ~l~G~g~g~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~lG~~~G~ai~g~  409 (495)
T PRK14995        359 ALLGFSAASALLASTSAIMAAAPPEKAAAAGAIETMAYELGAGLGIAIFGL  409 (495)
T ss_pred             HHHHHhHHHHHHHHHHHHHhcCCHHhcchHHHHHHHHHHHHHHHHHHHHHH
Confidence            888999888888888888999999999999999999999999999888764

>TIGR00891 2A0112 putative sialic acid transporter

Probab=100.00  E-value=1.1e-32  Score=272.56  Aligned_cols=371  Identities=17%  Similarity=0.139  Sum_probs=264.2

Q ss_pred             CChhHHHHHHHHHHHHHHHHHHHhhhhccccCCcccccCCcccccCCccccccccCcceecCCCCcceeeecceeeCCcc
Q 039541           37 LGLPQFIQVILISLLLIFESQQTFISVYTDEEPTWHCINNTTTCSSSSDICTLSKSAWAWDRPSDTTIISDWSLECAGSS  116 (521)
Q Consensus        37 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~p~~~c~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~i~~~~~~~~~~~~  116 (521)
                      ..+++|+.+..++++.+.+.++....++.                                   .|.+++++|++.++. 
T Consensus         6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------------------------------~~~l~~~~~~s~~~~-   49 (405)
T TIGR00891         6 LTRAQWNAFSAAWLGWLLDAFDFFLVALV-----------------------------------LAEVAGEFGLTTVDA-   49 (405)
T ss_pred             CCcccHHHHHHHHHHHHHHHHHHHHHHHH-----------------------------------HHHHHHHhCCChhhH-
Confidence            56788999999999999999999999999                                   999999999999777 


Q ss_pred             ccchhhHHHHHHHHHHhhhhhhhccccCCCCchHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHhhccchhhHhhhhhh
Q 039541          117 ILSGLPSSCFFIGCLLGGLALSTLGDSSSLGRKKLLFLSCFAMSITALATIFANNIWIYSTIRFVAGFFRAPIMTSVIVL  196 (521)
Q Consensus       117 ~~~~~~~s~~~lg~~i~~~~~g~l~dr~~~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~  196 (521)
                         +++.+.+.++..+++++.|+++||  +|||++++++.++.+++.++++++++++.+++.|++.|++.+...+...++
T Consensus        50 ---g~~~~~~~~~~~~~~~~~G~l~Dr--~g~r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~  124 (405)
T TIGR00891        50 ---ASLISAALISRWFGALMFGLWGDR--YGRRLPMVTSIVLFSAGTLACGFAPGYITMFIARLVIGIGMGGEYGSSAAY  124 (405)
T ss_pred             ---HHHHHHHHHHHHHHHHHHHHHHHH--hccHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhhhhhHHHHHH
Confidence               999999999999999999999999  999999999999999999999999999999999999999999999999999


Q ss_pred             eeeeecCcchhHHHHHHHHHHHHHHHHHHHH-HHhhcCCc--hhHHHHHHHHHHHHHHhhhceeeecchhHHHhcCCHHH
Q 039541          197 LSEMVSKRWRGQVVIIGFTFFSFGLVSLPAV-AYLSRGSS--WKMLYVWTSIPSIVCCIIIYPFISESPRWLFIHGHEAE  273 (521)
Q Consensus       197 i~~~~~~~~rg~~~~~~~~~~~~G~~i~~~i-~~~~~~~~--wr~~f~~~~~~~~~~~~~~~~~~~esp~~~~~~~~~~~  273 (521)
                      +.|++|+++|++++++.+.+..+|.++++.+ +.+.+..+  ||+.|++.++..++.. +....+||++++...+++.++
T Consensus       125 i~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~l~~~~~~~w~~~f~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~  203 (405)
T TIGR00891       125 VIESWPKHLRNKASGLLISGYAVGAVVAAQVYSLVVPVWGDGWRALFFISILPIIFAL-WLRKNIPEAEDWKEKHAGKAL  203 (405)
T ss_pred             HHHhCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHH-HHHHhCCCChhHHHHhhhhhh
Confidence            9999999999999999999999999999988 45555444  9999998776666655 555677887754322221111


Q ss_pred             HHHHHHHHhhhcCCCCCCCccccccCCCCCccccCCCcccccccHHHHhccHHHHHHHHHHHHH----HHHHHHHHHhHH
Q 039541          274 AMAVLKRLASRSNYQSDYGLESCCLSNMPPKAKNVIPKLDLYSSLKDLFNRKWALRRLLTIMAL----AFGIGVVYFGLL  349 (521)
Q Consensus       274 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~----~~~~~~~~~~~~  349 (521)
                      .++..++..+ ....                .+.  ...+.....+...+++  +.........    ...........|
T Consensus       204 ~~~~~~~~~~-~~~~----------------~~~--~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~  262 (405)
T TIGR00891       204 VRTMVDILYG-GEHR----------------IAN--IVMTLAAAMVQSAGKR--WPTFVYLVVLVLFANLYSHPIQDLLP  262 (405)
T ss_pred             hhhHHHHHhc-cchh----------------hhh--hhhhhhHHhhhhhhhh--hHHHHHHHHHHHHHHHHHhhhhhhhH
Confidence            1111111100 0000                000  0000000111111111  1111111111    111111112223


Q ss_pred             -hhccCCCccHHH---HHHHHHHHhHhHHHHHHHHHhhcCCchHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHH
Q 039541          350 -LGVGNLSFNIYL---SLAFNGLLDIPAYLLTFILIERWSRKSSILTFCILSGTCSAICVAIGDEQEVLQIGLELASFFS  425 (521)
Q Consensus       350 -~~~~~~~~~~~~---~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~  425 (521)
                       +..++.+.+...   ......++.+++.++.+++.||++||+.+..+..+..+........... .+...+..++.+++
T Consensus       263 ~~~~~~~g~s~~~~~~~~~~~~~~~~~g~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~  341 (405)
T TIGR00891       263 TYLKADLGLSPHTVANIVVFSNIGAIVGGCVFGFLGDWLGRRKAYVCSLLAGQLLIIPVFAIGAN-VAVLGLGLFFQQML  341 (405)
T ss_pred             HHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchhhhHHHHHHHHHHHHHHHHhCCc-hHHHHHHHHHHHHH
Confidence             333344554433   3345567788999999999999999998887776654433332222222 13334444555666


Q ss_pred             HHHHHHHHHHhhccccCchhhhhhhHHHHHhhhhhhhHHHHHHHhh
Q 039541          426 ACVAFNVLLVFGTELFTTCVRNSTTSLVRQAVNLGAAFSPVLISAG  471 (521)
Q Consensus       426 ~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~p~~~~~~  471 (521)
                      .....+....+..|.+|++.|++++|+.+....+|+.++|.+.|..
T Consensus       342 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~g~~~~g~l  387 (405)
T TIGR00891       342 VQGIWGILPKHLGEYFPTDQRAAGLGFTYQLGNLGGALAPIIGALL  387 (405)
T ss_pred             HccchhhHHHHHhhhCCcchhHHHhhHHHHHHHHHHHHHHHHHHHH
Confidence            6666777888899999999999999999999999999999999873

>TIGR00895 2A0115 benzoate transport

Probab=100.00  E-value=2.8e-32  Score=269.15  Aligned_cols=379  Identities=21%  Similarity=0.270  Sum_probs=275.7

Q ss_pred             CChhHHHHHHHHHHHHHHHHHHHhhhhccccCCcccccCCcccccCCccccccccCcceecCCCCcceeeecceeeCCcc
Q 039541           37 LGLPQFIQVILISLLLIFESQQTFISVYTDEEPTWHCINNTTTCSSSSDICTLSKSAWAWDRPSDTTIISDWSLECAGSS  116 (521)
Q Consensus        37 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~p~~~c~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~i~~~~~~~~~~~~  116 (521)
                      ..+++|..+....+..+..+++....++.                                   .|.+.+++|.+..+. 
T Consensus        11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------------------------------~~~~~~~~~~~~~~~-   54 (398)
T TIGR00895        11 LSRYQWRAIILSFLIMLMDGYDLAAMGFA-----------------------------------APAISAEWGLDPVQL-   54 (398)
T ss_pred             CcchHHHHHHHHHHHHHHHHHHHHHHHhh-----------------------------------HHHHhhccCCCHHHH-
Confidence            45667777777888888888888888888                                   899999999998666 


Q ss_pred             ccchhhHHHHHHHHHHhhhhhhhccccCCCCchHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHhhccchhhHhhhhhh
Q 039541          117 ILSGLPSSCFFIGCLLGGLALSTLGDSSSLGRKKLLFLSCFAMSITALATIFANNIWIYSTIRFVAGFFRAPIMTSVIVL  196 (521)
Q Consensus       117 ~~~~~~~s~~~lg~~i~~~~~g~l~dr~~~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~  196 (521)
                         +++.+.+.++..+++++.|+++||  +|||+++..+.++.+++.++.+++++++.+++.|++.|++.+...+...++
T Consensus        55 ---~~~~~~~~~~~~~~~~~~g~l~d~--~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~  129 (398)
T TIGR00895        55 ---GFLFSAGLIGMAFGALFFGPLADR--IGRKRVLLWSILLFSVFTLLCALATNVTQLLILRFLAGLGLGGLMPNLNAL  129 (398)
T ss_pred             ---HHHHHHHHHHHHHHHHHhHHHHHH--hhhHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHhcccccchhhHHHH
Confidence               999999999999999999999999  999999999999999999999999999999999999999999999999999


Q ss_pred             eeeeecCcchhHHHHHHHHHHHHHHHHHHHH-HHhhcCCchhHHHHHHHHHHHHHHhhhceeeecchhHHHhcCCHHHHH
Q 039541          197 LSEMVSKRWRGQVVIIGFTFFSFGLVSLPAV-AYLSRGSSWKMLYVWTSIPSIVCCIIIYPFISESPRWLFIHGHEAEAM  275 (521)
Q Consensus       197 i~~~~~~~~rg~~~~~~~~~~~~G~~i~~~i-~~~~~~~~wr~~f~~~~~~~~~~~~~~~~~~~esp~~~~~~~~~~~~~  275 (521)
                      +.|++|+++|++++++...+..+|..+++.+ +.+.+..+||+.|++.++..++..++.+.++||++++...+ +.++.+
T Consensus       130 ~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~  208 (398)
T TIGR00895       130 VSEYAPKRFRGTAVGLMFCGYPIGAAVGGFLAGWLIPVFGWRSLFYVGGIAPLLLLLLLMRFLPESIDFLVSK-RPETVR  208 (398)
T ss_pred             HHHHcCHHhhchhHhhHhhHHHHHHHHHHHHHHHHhhcccceeehhhhhhHHHHHHHHHHHhCCCCChHHHhc-CHHHHH
Confidence            9999999999999999999999999999988 67778889999999987666666656777789988765444 333333


Q ss_pred             HHHHHHhhhcCCCCCCCccccccCCCCCccccCCCcccccccHHHHhccHHHHHHHHHH---HHHHHHHHHHHHhHHhhc
Q 039541          276 AVLKRLASRSNYQSDYGLESCCLSNMPPKAKNVIPKLDLYSSLKDLFNRKWALRRLLTI---MALAFGIGVVYFGLLLGV  352 (521)
Q Consensus       276 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~  352 (521)
                      +..++... ....+..       +..+.++   .+....+...+.+++++..+......   ..............|++.
T Consensus       209 ~~~~~~~~-~~~~~~~-------~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  277 (398)
T TIGR00895       209 RIVNAIAP-QMQAEAQ-------SALPEQK---ATQGTKRSVFKALFQGKTARITVLLWLLYFMLLVGVYFLTNWLPKLM  277 (398)
T ss_pred             HHHHHHHH-hcccccc-------ccccccc---cccchhhHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33333311 1111000       0000000   00011111233344433322222211   111222222333345656


Q ss_pred             cCCCccHH---HHHHHHHHHhHhHHHHHHHHHhhcCCchHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHH
Q 039541          353 GNLSFNIY---LSLAFNGLLDIPAYLLTFILIERWSRKSSILTFCILSGTCSAICVAIGDEQEVLQIGLELASFFSACVA  429 (521)
Q Consensus       353 ~~~~~~~~---~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  429 (521)
                      ++.+.+..   .......++.+++.++.+++.||+++|+... +..+.++...++..... +.+...+..++.+++.+..
T Consensus       278 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~-~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~g~~~~~~  355 (398)
T TIGR00895       278 VELGFSLSLAATGGALFNFGGVIGSIIFGWLADRLGPRVTAL-LLLLGAVFAVLVGSTLF-SPTLLLLLGAIAGFFVNGG  355 (398)
T ss_pred             HHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHH-HHHHHHHHHHHHHHHhh-CHHHHHHHHHHHHHHHHHH
Confidence            66665543   3334556778899999999999999985444 33334443333333112 2245566777888888889


Q ss_pred             HHHHHHhhccccCchhhhhhhHHHHHhhhhhhhHHHHHHHh
Q 039541          430 FNVLLVFGTELFTTCVRNSTTSLVRQAVNLGAAFSPVLISA  470 (521)
Q Consensus       430 ~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~p~~~~~  470 (521)
                      .+...++..|.+|++.|+++.|+.+....+|..++|.+.|+
T Consensus       356 ~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~g~~~~G~  396 (398)
T TIGR00895       356 QSGLYALMALFYPTAIRATGVGWAIGIGRLGAIIGPILAGY  396 (398)
T ss_pred             HHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHhHHh
Confidence            99999999999999999999999999999999999999875

>TIGR00893 2A0114 d-galactonate transporter

Probab=100.00  E-value=1.3e-32  Score=271.34  Aligned_cols=366  Identities=16%  Similarity=0.144  Sum_probs=260.3

Q ss_pred             CcceeeecceeeCCccccchhhHHHHHHHHHHhhhhhhhccccCCCCchHHHHHHHHHHHHHHHHHhccccHHHHHHHHH
Q 039541          101 DTTIISDWSLECAGSSILSGLPSSCFFIGCLLGGLALSTLGDSSSLGRKKLLFLSCFAMSITALATIFANNIWIYSTIRF  180 (521)
Q Consensus       101 ~~~i~~~~~~~~~~~~~~~~~~~s~~~lg~~i~~~~~g~l~dr~~~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~  180 (521)
                      .|.+.+++|++..+.    +++.+++.++..+++++.|+++||  +|||+++.++.++.+++.+++++++|++.++++|+
T Consensus        17 ~~~~~~~~g~s~~~~----~~~~~~~~~~~~~~~~~~g~l~d~--~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   90 (399)
T TIGR00893        17 APMLQEDLGLSAAQY----GYVFSAFSWGYVVGQFPGGWLLDR--FGARKTLAVFIVIWGVFTGLQAFAGAYVSLYILRV   90 (399)
T ss_pred             HHHHHHhhCCChhhH----HHHHHHHHHHHHHHHHhHHHHHHh--cCcceeeHHHHHHHHHHHHHHHHHcCHHHHHHHHH
Confidence            888999999999777    999999999999999999999999  99999999999999999999999999999999999


Q ss_pred             HhhccchhhHhhhhhheeeeecCcchhHHHHHHHHHHHHHHHHHHHH-HHhhcCCchhHHHHHHHHHHHHHHhhhceeee
Q 039541          181 VAGFFRAPIMTSVIVLLSEMVSKRWRGQVVIIGFTFFSFGLVSLPAV-AYLSRGSSWKMLYVWTSIPSIVCCIIIYPFIS  259 (521)
Q Consensus       181 l~G~~~g~~~~~~~~~i~~~~~~~~rg~~~~~~~~~~~~G~~i~~~i-~~~~~~~~wr~~f~~~~~~~~~~~~~~~~~~~  259 (521)
                      +.|++.+...+....++.|++|+++|++++++.+....+|.++++.+ +.+.+..+||+.|++.+++.++..++.++..|
T Consensus        91 l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  170 (399)
T TIGR00893        91 LLGAAEAPFFPGIILIVASWFPASERATAVSIFNSAQGLGGIIGGPLVGWILIHFSWQWAFIIEGVLGIIWGVLWLKFIP  170 (399)
T ss_pred             HHHHHHHhhhhHHHHHHHHhCCHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHhhheec
Confidence            99999999999999999999999999999999999999999999988 66778889999999998888877756666677


Q ss_pred             cchhHHHhcCCHHHHHHHHHHHhhhcCCCCCCCccccccCCCCCccccCCCcccccccHHHHhccHHHHHHHHHHHHHHH
Q 039541          260 ESPRWLFIHGHEAEAMAVLKRLASRSNYQSDYGLESCCLSNMPPKAKNVIPKLDLYSSLKDLFNRKWALRRLLTIMALAF  339 (521)
Q Consensus       260 esp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~  339 (521)
                      |+|+..  +...++.++..      .+...             .+.+++.++...+...++.+++|.++...+..+....
T Consensus       171 ~~~~~~--~~~~~~~~~~~------~~~~~-------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  229 (399)
T TIGR00893       171 DPPQKA--KWLTEEEKYIV------VGGLL-------------AEQQGKGPSTPKKYQIKELLKDRRVWGLALGQFLVNI  229 (399)
T ss_pred             CCCCcc--ccCCHHHHhhc------chhhc-------------cccccccccCCCccchHHHhcCHHHHHHHHHHHHHHh
Confidence            765321  11111111000      00000             0000011111122367788899887766666555555


Q ss_pred             HHHHHHHhHHhhcc-CCCccHH---HHHHHHHHHhHhHHHHHHHHHhhcCCch--HHHHHH--HHHHH-HHHHHHhcCCc
Q 039541          340 GIGVVYFGLLLGVG-NLSFNIY---LSLAFNGLLDIPAYLLTFILIERWSRKS--SILTFC--ILSGT-CSAICVAIGDE  410 (521)
Q Consensus       340 ~~~~~~~~~~~~~~-~~~~~~~---~~~~~~~~~~~~~~~~~g~l~dr~g~~~--~~~~~~--~~~~i-~~~~~~~~~~~  410 (521)
                      .........+.++. ..+.+..   .......+..+++.++.+++.||++||+  ......  ....+ ..+........
T Consensus       230 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  309 (399)
T TIGR00893       230 GLGFFLTWFPTYLVQERGLSILEAGFMASLPGIVGFIGMILGGRLSDLLLRRGKSLVFARKTAIIAGLVLSLLMFATNYV  309 (399)
T ss_pred             HHHHHHHHHHHHHHHHhcccHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHHHHHHHhccc
Confidence            55555444555543 3454433   3344556778889999999999999986  111111  11111 11111111111


Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHhhccccCchhhhhhhHHHHHhhhhhhhHHHHHHHhh--ccc-hhHHHHHHHHHHH
Q 039541          411 QEVLQIGLELASFFSACVAFNVLLVFGTELFTTCVRNSTTSLVRQAVNLGAAFSPVLISAG--RQN-EFLSFGVFGLVVF  487 (521)
Q Consensus       411 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~p~~~~~~--~~~-~~~~~~~~~~~~~  487 (521)
                      ......+.....+++.....+....+..|.+|++.|+++.|+.+....+|+.++|.+.+..  ..+ +...+.+.+++.+
T Consensus       310 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~~~~~i~g~l~~~~g~~~~~~~~~~~~~~  389 (399)
T TIGR00893       310 NIPYAALALVALGFFGLGAGAIGWALISDNAPGNIAGLTGGLINSLGNLGGIVGPIVIGAIAATTGSFAGALMVVAALAL  389 (399)
T ss_pred             hhHHHHHHHHHHHHhchhhhhHHHHHHHhhcChhHHHHHHHHHHHHHHHhhhhhhHHhhhhccCCCchhHHHHHHHHHHH
Confidence            1122222333333333336789999999999999999999999999999999999999863  234 5666777776666


Q ss_pred             HHhHhh
Q 039541          488 CFGFFV  493 (521)
Q Consensus       488 ~~~~~~  493 (521)
                      ++.+..
T Consensus       390 ~~~~~~  395 (399)
T TIGR00893       390 IGALSY  395 (399)
T ss_pred             HHHHHH
Confidence            655544

>KOG0252 consensus Inorganic phosphate transporter [Inorganic ion transport and metabolism]

Probab=100.00  E-value=5.9e-35  Score=268.60  Aligned_cols=424  Identities=17%  Similarity=0.218  Sum_probs=300.9

Q ss_pred             CChhHHHHHHHHHHHHHHHHHHHhhhhccccCCcccccCCcccccCCccccccccCcceecCCCCcceeeecceeeC---
Q 039541           37 LGLPQFIQVILISLLLIFESQQTFISVYTDEEPTWHCINNTTTCSSSSDICTLSKSAWAWDRPSDTTIISDWSLECA---  113 (521)
Q Consensus        37 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~p~~~c~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~i~~~~~~~~~---  113 (521)
                      ..+++...+.+...+.+.+++|.+.++.+                                   .|-+...|.-..+   
T Consensus        35 ~qw~~fk~i~iAG~GfftDsYDlF~I~lV-----------------------------------t~il~~lY~~~~~~~g   79 (538)
T KOG0252|consen   35 LQWKHFKAIIIAGMGFFTDSYDLFSISLV-----------------------------------TKILGYLYYHGDESGG   79 (538)
T ss_pred             hhHHHHHHHHHhhhhhcccchhhhhHHHH-----------------------------------HHHHHHHhcCCCCCCC
Confidence            45677778888889999999999999888                                   4444433211110   


Q ss_pred             -CccccchhhHHHHHHHHHHhhhhhhhccccCCCCchHHHHHHHHHHHHHHHHHhcccc-------HHHHHHHHHHhhcc
Q 039541          114 -GSSILSGLPSSCFFIGCLLGGLALSTLGDSSSLGRKKLLFLSCFAMSITALATIFANN-------IWIYSTIRFVAGFF  185 (521)
Q Consensus       114 -~~~~~~~~~~s~~~lg~~i~~~~~g~l~dr~~~Grr~~l~~~~~~~~~~~~~~~~~~~-------~~~l~~~r~l~G~~  185 (521)
                       --+-..+.+..+..+|.++||+++|+++||  +|||+++...++++.+++++++++..       .+++...|++.|+|
T Consensus        80 ~~ps~i~~~Vn~~A~vGti~GQl~FG~lgD~--~GRK~vYG~~liImIi~t~~~~~s~~~~~~~~~m~~L~~~R~~LGiG  157 (538)
T KOG0252|consen   80 HYPSGVLALVNAAALVGTIFGQLFFGWLGDK--FGRKKVYGKELIIMIICSALSGLSVGTTSPLGVMMTLCFFRFLLGIG  157 (538)
T ss_pred             cCCchHHHHHHHHHHHHHHHHHHHHHHHHhh--hcchhhhhHHHHHHHHHHHHhccCCCCCCCcchhhHHHHHHHHhhcc
Confidence             001334888999999999999999999999  99999999999999999998887632       56888999999999


Q ss_pred             chhhHhhhhhheeeeecCcchhHHHHHHHHHHHHHHHHHHHHHHhhc----------------CCchhHHHHHHHHHHHH
Q 039541          186 RAPIMTSVIVLLSEMVSKRWRGQVVIIGFTFFSFGLVSLPAVAYLSR----------------GSSWKMLYVWTSIPSIV  249 (521)
Q Consensus       186 ~g~~~~~~~~~i~~~~~~~~rg~~~~~~~~~~~~G~~i~~~i~~~~~----------------~~~wr~~f~~~~~~~~~  249 (521)
                      .|+-+|.+.+..+|...+++||...+.+.+..++|.+.|.+++.++.                +.=||..+.+.++++++
T Consensus       158 IGGDYPlSAtI~SE~an~~~RGa~iaavFa~Qg~GilaG~ivt~Iv~~~fe~~~~~~~~~~~ld~vWRl~~glg~vpa~~  237 (538)
T KOG0252|consen  158 IGGDYPLSATIMSESANKKTRGAFIAAVFAMQGFGILAGGIVALIVSAIFEKIFNGPSTYPHLDGVWRIIFGLGAVPALL  237 (538)
T ss_pred             ccCCCcchHHHhhhhhhhccccceeEEEEEecchhHhhccHHHHHHHHHHhccCCCCCCchHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999888888888877776644321                12499999999999998


Q ss_pred             HHhhhceeeecchhHHHhcCC-HHHHHHHHHHHhhhcCCCCCCCccccccCCCCCccccCCCcccccccHHHHhccHHHH
Q 039541          250 CCIIIYPFISESPRWLFIHGH-EAEAMAVLKRLASRSNYQSDYGLESCCLSNMPPKAKNVIPKLDLYSSLKDLFNRKWAL  328 (521)
Q Consensus       250 ~~~~~~~~~~esp~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  328 (521)
                      .+ ...+.+|||+++.....+ .+.+.+..++.     .  +.   .++.++..  ....+...+....+...+..+ .-
T Consensus       238 ~l-y~Rl~M~Et~~Y~al~~~~~~~a~~d~~k~-----~--~~---~~~~~~~~--~~~~~~~~~~~~~F~~~f~~~-hg  303 (538)
T KOG0252|consen  238 VL-YFRLKMPETARYTALVSKKLKQAAGDMKKV-----L--SV---DIEAESTA--ESDVPPPSNSFGLFSRLFLRW-HG  303 (538)
T ss_pred             HH-HhhhcCCcchhHHHHhhcCHhhhhhccccc-----c--cc---ccchhhcc--ccCCCCcccccchHHHHHHHH-HH
Confidence            88 888999999987633222 22221111110     0  00   11111111  011111111111233444433 34


Q ss_pred             HHHHHHHHHHHHHHHHHHhHHhhcc----CCCcc----HH--------HHHHHHHHHhHhHHHHHHHHHhhcCCchHHHH
Q 039541          329 RRLLTIMALAFGIGVVYFGLLLGVG----NLSFN----IY--------LSLAFNGLLDIPAYLLTFILIERWSRKSSILT  392 (521)
Q Consensus       329 ~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~----~~--------~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~  392 (521)
                      +.++.....|+...+.+|...++..    ..+..    ..        ....+.....++|..+...++|++|||++.+.
T Consensus       304 ~~Llgt~~~WFllDiafy~~nL~~s~I~~~ig~~~~~~~~~~~~~vA~~~~iia~~~~vPGyw~tv~~id~iGRk~iq~~  383 (538)
T KOG0252|consen  304 KHLLGTAGTWFLLDIAFYGQNLFQSVIFSAIGVIPSANTYHELFKVAEGNLIIAVCSTVPGYWFTVYFIDIIGRKYIQLM  383 (538)
T ss_pred             HHHHHHHHHHHhhhhhhhccccHHHHHHHhhccCCCcchHHHHHHHHHHHHHHHHHccCCceeEEEEEeehhhhHHHHHh
Confidence            6677788889988888877654432    22211    11        11223334455677788889999999999999


Q ss_pred             HHHHHHHHHHHHHhcCCchH--HHHHHHHHHH-HHHHHHHHHHHHHhhccccCchhhhhhhHHHHHhhhhhhhHHHHHHH
Q 039541          393 FCILSGTCSAICVAIGDEQE--VLQIGLELAS-FFSACVAFNVLLVFGTELFTTCVRNSTTSLVRQAVNLGAAFSPVLIS  469 (521)
Q Consensus       393 ~~~~~~i~~~~~~~~~~~~~--~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~p~~~~  469 (521)
                      ++.++.+..+.+....++..  ....+...+. .++..+.......+.+|.+|.+.|++..|+....+..|++++.....
T Consensus       384 GF~~~~i~~~~~~~~y~~~~~~~Gf~v~y~l~~ff~NFGPn~ttfivpaE~FParvR~t~hGIsAA~GK~GAivg~~~F~  463 (538)
T KOG0252|consen  384 GFFIMTIFFFVIAGPYNQLENTIGFVVLYSLTFFFGNFGPNATTFIVPAEIFPARVRSTCHGISAASGKAGAIVGAFGFL  463 (538)
T ss_pred             hHHHHHHHHHHHcCCcccccccCceeehHHHHHHHHhcCCCceeEEeehhhchHHHhhhhhhHHHHhccchHHHHHHHhh
Confidence            99999999988887665221  2222333333 33333445678888999999999999999999999999999999887


Q ss_pred             hhc-------cchhHHHHHHHHHHHHHhHhhhccccCCCCCCCcchHhh
Q 039541          470 AGR-------QNEFLSFGVFGLVVFCFGFFVVFLPETIGVTLCDTLDQQ  511 (521)
Q Consensus       470 ~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  511 (521)
                      ...       .+....+.+++.+.+++.+..+++||++++++++...+.
T Consensus       464 ~~t~~~yp~~~g~~~v~~i~~~~~~~gi~~T~l~pEtk~~~leei~~e~  512 (538)
T KOG0252|consen  464 YLTDHNYPPNIGVRNVFIILAGCMLLGILFTLLIPETKGKSLEEISNEE  512 (538)
T ss_pred             HhhhccCCccccchHHHHHHHHHHHHhHheeEEeecccccCHHHhcChh
Confidence            632       356788999999999999999999999999987764443

>PRK09705 cynX putative cyanate transporter; Provisional

Probab=100.00  E-value=6e-32  Score=264.80  Aligned_cols=347  Identities=12%  Similarity=0.053  Sum_probs=250.6

Q ss_pred             CcceeeecceeeCCccccchhhHHHHHHHHHHhhhhhhhccccCCCCchHHHHHHHHHHHHHHHHHhccccHHHHHHHHH
Q 039541          101 DTTIISDWSLECAGSSILSGLPSSCFFIGCLLGGLALSTLGDSSSLGRKKLLFLSCFAMSITALATIFANNIWIYSTIRF  180 (521)
Q Consensus       101 ~~~i~~~~~~~~~~~~~~~~~~~s~~~lg~~i~~~~~g~l~dr~~~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~  180 (521)
                      +|.+++|+|++.++.    |++.+.+.+++.+++++.|+++||  +|||+++..++++.+++.+++++++|++.++++|+
T Consensus        32 lp~i~~~~~~s~~~~----g~~~s~~~~~~~l~~~~~g~l~dr--~G~r~~l~~~~~l~~~~~~~~~~a~~~~~ll~~r~  105 (393)
T PRK09705         32 LPQLRQASGMSFSVA----ALLTALPVVTMGGLALAGSWLHQH--VSERRSVAISLLLIAVGALMRELYPQSALLLSSAL  105 (393)
T ss_pred             HHHHHHHhCCCHHHH----HHHHHHHHHHHHHHhhhhHHHHHH--hCchHHHHHHHHHHHHHHHHHHHCcchHHHHHHHH
Confidence            899999999999777    999999999999999999999999  99999999999999999999999999999999999


Q ss_pred             HhhccchhhHhhhhhheeeeecCcchhHHHHHHHHHHHHHHHHHHHH-HHhhcCC-chhHHHHHHHHHHHHHHhhhceee
Q 039541          181 VAGFFRAPIMTSVIVLLSEMVSKRWRGQVVIIGFTFFSFGLVSLPAV-AYLSRGS-SWKMLYVWTSIPSIVCCIIIYPFI  258 (521)
Q Consensus       181 l~G~~~g~~~~~~~~~i~~~~~~~~rg~~~~~~~~~~~~G~~i~~~i-~~~~~~~-~wr~~f~~~~~~~~~~~~~~~~~~  258 (521)
                      ++|++.+...+....++.+++| ++|+++++++..+..+|..+++.+ +.+.++. +||+.+.+.++..++.. +.++..
T Consensus       106 l~Gig~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~g~~~g~~~~~~l~~~~~~w~~~~~~~~~~~~~~~-~~~~~~  183 (393)
T PRK09705        106 LGGVGIGIIQAVMPSVIKRRFQ-QRTPLVMGLWSAALMGGGGLGAAITPWLVQHSETWYQTLAWWALPAVVAL-FAWWWQ  183 (393)
T ss_pred             HHHhHHHHHhhhhhHHHHHHcc-ccchhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHH-HHHHHH
Confidence            9999999999999999999997 889999999999999999999888 4555553 89998877666554443 222221


Q ss_pred             -ecchhHHHhcCCHHHHHHHHHHHhhhcCCCCCCCccccccCCCCCccccCCCcccccccHHHHhccHHHHHHHHHHHHH
Q 039541          259 -SESPRWLFIHGHEAEAMAVLKRLASRSNYQSDYGLESCCLSNMPPKAKNVIPKLDLYSSLKDLFNRKWALRRLLTIMAL  337 (521)
Q Consensus       259 -~esp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~  337 (521)
                       ++.|+                     .+.+                  ++       ...++.+++++.+...+...+.
T Consensus       184 ~~~~~~---------------------~~~~------------------~~-------~~~~~~l~~~~~~~l~~~~~~~  217 (393)
T PRK09705        184 SAREVA---------------------SSHK------------------TT-------TTPVRVVFTPRAWTLGVYFGLI  217 (393)
T ss_pred             hcCCCc---------------------cccC------------------CC-------cCCcccccCHhHHHHHHHHHHH
Confidence             11110                     0000                  00       0112334556554444333333


Q ss_pred             HHHHHHHHHhHHhhccCCCccHH---HHHHHHHHHhHhHHHHHHHHHhhcCCchHHHHHHHHHHHHHHHHHhcCCchHHH
Q 039541          338 AFGIGVVYFGLLLGVGNLSFNIY---LSLAFNGLLDIPAYLLTFILIERWSRKSSILTFCILSGTCSAICVAIGDEQEVL  414 (521)
Q Consensus       338 ~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~  414 (521)
                      ...........|.++.+.+.+..   ....+.+++.++++++.+++.||++||+....+..+..++...+...+... ..
T Consensus       218 ~~~~~~~~~~lp~~l~~~g~s~~~ag~~~~~~~i~~i~g~~~~g~l~~r~~~~~~~~~~~~l~~~~~~~~~~~~~~~-~~  296 (393)
T PRK09705        218 NGGYASLIAWLPAFYIEIGASAQYSGSLLALMTLGQAAGALLMPAMARHQDRRKLLMLALVLQLVGFCGFIWLPLQL-PV  296 (393)
T ss_pred             HHHHHHHHHHHHHHHHHcCCChhhhhHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHccchH-HH
Confidence            33333333334444555665543   334556688889999999999999999988888877777766554443322 12


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhccccC-chhhhhhhHHHHHhhhhhhhHHHHHHHhhc---cchhHHHHHHHHHHHHHh
Q 039541          415 QIGLELASFFSACVAFNVLLVFGTELFT-TCVRNSTTSLVRQAVNLGAAFSPVLISAGR---QNEFLSFGVFGLVVFCFG  490 (521)
Q Consensus       415 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~r~~~~~~~~~~~~~g~~~~p~~~~~~~---~~~~~~~~~~~~~~~~~~  490 (521)
                        ...++.+++.+..++.......+..+ ++.+++..|+.+....+++.++|.+.|+..   .++...|.+.+++.++..
T Consensus       297 --~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~gp~~~G~l~~~~g~~~~~~~~~~~~~~~~~  374 (393)
T PRK09705        297 --LWAMVCGLGLGGAFPLCLLLALDHSVQPAIAGKLVAFMQGIGFIIAGLAPWFSGVLRSISGNYLMDWAFHALCVVGLM  374 (393)
T ss_pred             --HHHHHHHHhccchHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHH
Confidence              22344566666777766666667664 678999999999999999999999998732   235566666666555554


Q ss_pred             Hh-hhccccCCCCCC
Q 039541          491 FF-VVFLPETIGVTL  504 (521)
Q Consensus       491 ~~-~~~~~~~~~~~~  504 (521)
                      +. ....||+++|..
T Consensus       375 ~~~~~~~~~~~~~~~  389 (393)
T PRK09705        375 IITLRFAPARFPQLW  389 (393)
T ss_pred             HHHHHhccccccchh
Confidence            44 345567666543

>TIGR00894 2A0114euk Na(+)-dependent inorganic phosphate cotransporter

Probab=100.00  E-value=1.7e-31  Score=268.36  Aligned_cols=415  Identities=11%  Similarity=0.073  Sum_probs=277.5

Q ss_pred             CChhHHHHHHHHHHHHHHHHHHHhhhhccccCCcccccCCcccccC--CccccccccCcceecCCCCcceeeecceeeCC
Q 039541           37 LGLPQFIQVILISLLLIFESQQTFISVYTDEEPTWHCINNTTTCSS--SSDICTLSKSAWAWDRPSDTTIISDWSLECAG  114 (521)
Q Consensus        37 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~p~~~c~~~~~~~~~--~~~~c~~~~~~~~~~~~~~~~i~~~~~~~~~~  114 (521)
                      ..+.+|.+..+++++..++..|+..++++..     |.    +.++  +...|...      +++.......|++++..+
T Consensus        13 ~~~~r~~i~~~~~~~~~~~y~dr~~~~~a~~-----~~----~~~~~~~~~~~~~~------~~~~~~~~~~~~~~s~~~   77 (465)
T TIGR00894        13 FCSFRLFLSFLLHICNVIIIAQRICLSLTMV-----AM----VNKENSTDLACLSA------ENELDNIKNPNFKWSGAL   77 (465)
T ss_pred             ccCcHHHHHHHHHHHHHHHHHHHhhheEEEE-----Ec----ccCCCCCCcccccc------ccccccccCCCCCCCHHH
Confidence            5677888889999999998999988887711     11    0000  00111110      111122233478888866


Q ss_pred             ccccchhhHHHHHHHHHHhhhhhhhccccCCCCchHHHHHHHHHHHHHHHHHhcc--ccHHHHHHHHHHhhccchhhHhh
Q 039541          115 SSILSGLPSSCFFIGCLLGGLALSTLGDSSSLGRKKLLFLSCFAMSITALATIFA--NNIWIYSTIRFVAGFFRAPIMTS  192 (521)
Q Consensus       115 ~~~~~~~~~s~~~lg~~i~~~~~g~l~dr~~~Grr~~l~~~~~~~~~~~~~~~~~--~~~~~l~~~r~l~G~~~g~~~~~  192 (521)
                      .    |++.+.+.+++.+++++.|+++||  +|||+++..+.++.+++.+++.++  .+++.+++.|+++|++.+...+.
T Consensus        78 ~----g~~~s~~~~~~~~~~~~~g~l~dr--~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~~~G~~~~~~~~~  151 (465)
T TIGR00894        78 Q----GLILSSHFYGQIIIQIPVGYLAGK--YVFKWSIGIGMFLSSVISIVIPWAAGGGIALVVFCRVIQGLAQGSVSPA  151 (465)
T ss_pred             h----hHHHHHHHHHHHHHHcchHHHHHH--hCcchhhHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHhcccchhh
Confidence            6    999999999999999999999999  999999999999999999887554  56889999999999999999999


Q ss_pred             hhhheeeeecCcchhHHHHHHHHHHHHHHHHHHHH-HHhhcC-CchhHHHHHHHHHHHHHHhhhceeeecchhHHHhcCC
Q 039541          193 VIVLLSEMVSKRWRGQVVIIGFTFFSFGLVSLPAV-AYLSRG-SSWKMLYVWTSIPSIVCCIIIYPFISESPRWLFIHGH  270 (521)
Q Consensus       193 ~~~~i~~~~~~~~rg~~~~~~~~~~~~G~~i~~~i-~~~~~~-~~wr~~f~~~~~~~~~~~~~~~~~~~esp~~~~~~~~  270 (521)
                      ...++.|++|+++|++++++...+..+|.++++.+ +.+... .+||+.|++.+++.++..++.+.+.+|+|+..  +..
T Consensus       152 ~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~i~~~l~~~l~~~~~gw~~~f~i~~~~~~~~~~~~~~~~~~~p~~~--~~~  229 (465)
T TIGR00894       152 THKIIVKWAPPKERSRLLGMSTSGFQLGTFIFLPISGWLCESWGGWPMIFYVFGIVGCAWSLLWFVFPADDPSIH--PCI  229 (465)
T ss_pred             HHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCeehhhhhHHHHHHHHHHHHHhcCCcccC--CCC
Confidence            99999999999999999999999999999999988 667777 49999999999988887755556667777421  111


Q ss_pred             HHHHHHHHHHHhhhcCCCCCCCccccccCCCCCccccCCCcccccccHHHHhccHHHHHHHHHHHHHHHHHHHHHHhHHh
Q 039541          271 EAEAMAVLKRLASRSNYQSDYGLESCCLSNMPPKAKNVIPKLDLYSSLKDLFNRKWALRRLLTIMALAFGIGVVYFGLLL  350 (521)
Q Consensus       271 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  350 (521)
                      .++.++..++.   .+.                + ++   +.+.+.+++++++++.++...+..+..........+.+|.
T Consensus       230 ~~~~~~~i~~~---~~~----------------~-~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~  286 (465)
T TIGR00894       230 SKFEKKYINSS---LQG----------------Q-KG---STRQSLPIKAIPKSLPVWAIWFAIFGHFWLYTILPTYLPT  286 (465)
T ss_pred             CHHHHHHHHhh---ccc----------------c-cC---CCCCCCCHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            11111111110   000                0 00   0011236888999998777666665555555444444555


Q ss_pred             hc-cCCCccHHHH---HHHHHHHhHhHHHHHHHHHhhcCCchHH--------HHHHHHH--HHHHHHHHhcCCchHHHHH
Q 039541          351 GV-GNLSFNIYLS---LAFNGLLDIPAYLLTFILIERWSRKSSI--------LTFCILS--GTCSAICVAIGDEQEVLQI  416 (521)
Q Consensus       351 ~~-~~~~~~~~~~---~~~~~~~~~~~~~~~g~l~dr~g~~~~~--------~~~~~~~--~i~~~~~~~~~~~~~~~~~  416 (521)
                      ++ +..+.+....   ..+..++.+++.++.|+++||+++|+..        ..+....  ++..+...... .......
T Consensus       287 ~l~~~~g~s~~~~g~~~~~~~~~~~i~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~  365 (465)
T TIGR00894       287 FISWVLRVSGKENGLLSSLPYLFAWLCSIFAGYLADFLKSSKTLSLTAARKIFNGIGGLGPGIFAYALPYLS-AAFYLTI  365 (465)
T ss_pred             HHHHHhCcChHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHcC-CchHHHH
Confidence            44 4455554333   3344577788999999999997644211        1111111  11111111111 1112333


Q ss_pred             HHHHHHHHHHHHHHHHHHHhhccccCchhhhhhhHHHHHhhhhhhhHHHHHHHhhc-----cchhHHHHHHHHHHHHHhH
Q 039541          417 GLELASFFSACVAFNVLLVFGTELFTTCVRNSTTSLVRQAVNLGAAFSPVLISAGR-----QNEFLSFGVFGLVVFCFGF  491 (521)
Q Consensus       417 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~p~~~~~~~-----~~~~~~~~~~~~~~~~~~~  491 (521)
                      +.+.+.+++.+...+.......|..|+ .+|.+.|+.+..+.+|++++|.+.+...     ..+...|.+.+++.+++.+
T Consensus       366 ~~~~l~~~~~~~~~~~~~~~~~~~~~~-~~g~~~g~~~~~~~l~~~i~p~l~g~~~~~~~~~~~~~~f~~~~~~~~i~~i  444 (465)
T TIGR00894       366 IILTLANAVSSGPLAGVLINSLDLAPR-FLGFIKGITGLPGFIGGLIASTLAGNILSQDSKNVWLIVFLIMAFVNILCVI  444 (465)
T ss_pred             HHHHHHHHHhhhhhhhhhhchhhcChh-HHHHHHHHHHHHHHHHHHHHHHhhheeeCCCCchHHHHHHHHHHHHHHHHHH
Confidence            444444554444555555666677776 7899999999999999999999998632     2255667777777777766


Q ss_pred             hhhccccC
Q 039541          492 FVVFLPET  499 (521)
Q Consensus       492 ~~~~~~~~  499 (521)
                      +.....+.
T Consensus       445 ~~~~~~~~  452 (465)
T TIGR00894       445 FYLIFGSA  452 (465)
T ss_pred             Heeeeecc
Confidence            65554433

>PRK05122 major facilitator superfamily transporter; Provisional

Probab=100.00  E-value=1e-31  Score=264.81  Aligned_cols=345  Identities=14%  Similarity=0.041  Sum_probs=248.6

Q ss_pred             Ccc-eeeecceeeCCccccchhhHHHHHHHHHHhhhhhhhccccCCCCchHHHHHHHHHHHHHHHHHhcc--------cc
Q 039541          101 DTT-IISDWSLECAGSSILSGLPSSCFFIGCLLGGLALSTLGDSSSLGRKKLLFLSCFAMSITALATIFA--------NN  171 (521)
Q Consensus       101 ~~~-i~~~~~~~~~~~~~~~~~~~s~~~lg~~i~~~~~g~l~dr~~~Grr~~l~~~~~~~~~~~~~~~~~--------~~  171 (521)
                      +|. +++++|.+..+.    |++.+++.++..+++++.|+++||  +|||++++.+.++.+++.+.++++        .+
T Consensus        38 l~~~i~~~~g~s~~~~----g~~~~~~~~~~~i~~~~~G~l~Dr--~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  111 (399)
T PRK05122         38 LPGYVHDQLGFSAFLA----GLVISLQYLATLLSRPHAGRYADT--LGPKKAVVFGLCGCALSGLLYLLAGLLAAWPVLS  111 (399)
T ss_pred             HHHHHHHhcCccHHHH----HHHHHHHHHHHHHhchhhHhHHhc--cCCcchHHHHHHHHHHHHHHHHHhhhhhccchhH
Confidence            565 678999999666    999999999999999999999999  999999999999888877766543        25


Q ss_pred             HHHHHHHHHHhhccchhhHhhhhhheeeeecCcchhHHHHHHHHHHHHHHHHHHHH-HHhhcCCchhHHHHHHHHHHHHH
Q 039541          172 IWIYSTIRFVAGFFRAPIMTSVIVLLSEMVSKRWRGQVVIIGFTFFSFGLVSLPAV-AYLSRGSSWKMLYVWTSIPSIVC  250 (521)
Q Consensus       172 ~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~rg~~~~~~~~~~~~G~~i~~~i-~~~~~~~~wr~~f~~~~~~~~~~  250 (521)
                      ++.+++.|+++|++.+...+...+++.|+.|+++|++++++.+.+..+|.++++.+ +.+.+..|||+.+++.++..++.
T Consensus       112 ~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~l~~~l~~~~g~~~~~~~~~~~~~~~  191 (399)
T PRK05122        112 LLLLLLGRLLLGIGESLAGTGSILWGIGRVGALHTGRVISWNGIATYGALAIGAPLGVLLYHWGGLAGLGLLIMLLALLG  191 (399)
T ss_pred             HHHHHHHHHHHHhhHHhhcchHHHHHHhhcChhhhccchhhhhhhhhHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHH
Confidence            77899999999999999999999999999999999999999999999999999998 56778889999988877665554


Q ss_pred             HhhhceeeecchhHHHhcCCHHHHHHHHHHHhhhcCCCCCCCccccccCCCCCccccCCCcccccccHHHHhccHHHHHH
Q 039541          251 CIIIYPFISESPRWLFIHGHEAEAMAVLKRLASRSNYQSDYGLESCCLSNMPPKAKNVIPKLDLYSSLKDLFNRKWALRR  330 (521)
Q Consensus       251 ~~~~~~~~~esp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~  330 (521)
                      . +.....|++++     .+ ++                                         +.++++.+++.  +..
T Consensus       192 ~-~~~~~~~~~~~-----~~-~~-----------------------------------------~~~~~~~~~~~--~~~  221 (399)
T PRK05122        192 L-LLARPRPAVPP-----VK-GE-----------------------------------------RLPFRRVLGRV--WPY  221 (399)
T ss_pred             H-HHHhcCCCCCC-----CC-cc-----------------------------------------chhHHHHHHHH--HHH
Confidence            4 22222232210     00 00                                         00122222211  111


Q ss_pred             HHHHHHHHHHHHHHHHhHHhhccCCCcc-HHHHHHHHHHHhHhHHHHHHHHHhhcCCchHHHHHHHHHHHHHHHHHhcCC
Q 039541          331 LLTIMALAFGIGVVYFGLLLGVGNLSFN-IYLSLAFNGLLDIPAYLLTFILIERWSRKSSILTFCILSGTCSAICVAIGD  409 (521)
Q Consensus       331 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~i~~~~~~~~~~  409 (521)
                      ........+.........+.+..+.+.+ .........++.+++.++.+++.||+++|+.+..+..+.+++.+.+...++
T Consensus       222 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~  301 (399)
T PRK05122        222 GMGLALASIGFGTIATFITLYYAARGWDGAALALTLFGVAFVGARLLFGNLINRLGGLRVAIVSLLVEILGLLLLWLAPS  301 (399)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHcccccchHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhcc
Confidence            1111122222222222223333333322 223334556777888999999999999999888888877777766665433


Q ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHhhccccCchhhhhhhHHHHHhhhhhhhHHHHHHHhh--ccchhHHHHHHHHHHH
Q 039541          410 EQEVLQIGLELASFFSACVAFNVLLVFGTELFTTCVRNSTTSLVRQAVNLGAAFSPVLISAG--RQNEFLSFGVFGLVVF  487 (521)
Q Consensus       410 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~p~~~~~~--~~~~~~~~~~~~~~~~  487 (521)
                      .  +...+..++.+++.+..++.......|..|++.|+++.|+.+....+|..++|.+.|..  ..++...+.+.+++.+
T Consensus       302 ~--~~~~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~  379 (399)
T PRK05122        302 P--WMALIGAALTGFGFSLVFPALGVEAVKRVPPQNRGAALGAYSVFLDLSLGITGPLAGLVASWFGYPSIFLAAALAAL  379 (399)
T ss_pred             H--HHHHHHHHHHHHhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHH
Confidence            2  44556677788888888887778888999999999999999999999999888888763  3467777777777777


Q ss_pred             HHhHhhhccccCCCCC
Q 039541          488 CFGFFVVFLPETIGVT  503 (521)
Q Consensus       488 ~~~~~~~~~~~~~~~~  503 (521)
                      ++.+..+.++++++++
T Consensus       380 ~~~~~~~~~~~~~~~~  395 (399)
T PRK05122        380 LGLALTWLLYRRAPRA  395 (399)
T ss_pred             HHHHHHHHhccccccc
Confidence            7766666666544443

>PLN00028 nitrate transmembrane transporter; Provisional

Probab=100.00  E-value=7.1e-32  Score=270.18  Aligned_cols=383  Identities=14%  Similarity=0.088  Sum_probs=259.4

Q ss_pred             CCChhHHHHHHHHHHHHHHHHHHHhhhhccccCCcccccCCcccccCCccccccccCcceecCCCCcceeeecceeeCCc
Q 039541           36 NLGLPQFIQVILISLLLIFESQQTFISVYTDEEPTWHCINNTTTCSSSSDICTLSKSAWAWDRPSDTTIISDWSLECAGS  115 (521)
Q Consensus        36 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~p~~~c~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~i~~~~~~~~~~~  115 (521)
                      .+.+.+++.+...++..+...++.....+.                                   .|.+.+++|++.++.
T Consensus        29 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------------------------------~~~l~~~~gls~~~~   73 (476)
T PLN00028         29 SFARPHMRAFHLSWISFFTCFVSTFAAAPL-----------------------------------LPIIRDNLNLTKSDI   73 (476)
T ss_pred             CCCchHHHHHHHHHHHHHHHHHHHHHHHHH-----------------------------------HHHHHHHcCCCHHHH
Confidence            455566777777777777777777777777                                   899999999999776


Q ss_pred             cccchhhHHHHHHHHHHhhhhhhhccccCCCCchHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHhhccchhhHhhhhh
Q 039541          116 SILSGLPSSCFFIGCLLGGLALSTLGDSSSLGRKKLLFLSCFAMSITALATIFANNIWIYSTIRFVAGFFRAPIMTSVIV  195 (521)
Q Consensus       116 ~~~~~~~~s~~~lg~~i~~~~~g~l~dr~~~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~  195 (521)
                          +++.+.+.+++.+++++.|+++||  +|||+++..+.++.+++.++++++++++.+++.|++.|++.+... ....
T Consensus        74 ----g~~~~~~~~~~~~~~~~~G~l~dr--~G~r~~~~~~~~~~~~~~~~~~~~~s~~~l~~~r~l~G~~~~~~~-~~~~  146 (476)
T PLN00028         74 ----GNAGIASVSGSIFSRLAMGPVCDL--YGPRYGSAFLLMLTAPAVFCMSLVSSATGFIAVRFFIGFSLATFV-SCQY  146 (476)
T ss_pred             ----HHHHHHHHHHHHHHHHHHHHHHHH--hCChHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhhH-HHHH
Confidence                999999999999999999999999  999999999999999999999999999999999999999987643 4566


Q ss_pred             heeeeecCcchhHHHHHHHHHHHHHHHHHHHHH-Hh----hc-----CCchhHHHHHHHHHHHHHHhhhceeeecchhHH
Q 039541          196 LLSEMVSKRWRGQVVIIGFTFFSFGLVSLPAVA-YL----SR-----GSSWKMLYVWTSIPSIVCCIIIYPFISESPRWL  265 (521)
Q Consensus       196 ~i~~~~~~~~rg~~~~~~~~~~~~G~~i~~~i~-~~----~~-----~~~wr~~f~~~~~~~~~~~~~~~~~~~esp~~~  265 (521)
                      ++.|++|+++||+++++......+|..+++.+. .+    ..     ..|||+.|++.+++.++..++.+++.++.|+  
T Consensus       147 ~i~~~~~~~~rg~a~g~~~~~~~~g~~~~~~~~~~i~~~~~~~~~~~~~gWr~~f~i~g~l~l~~~l~~~~~~~~~p~--  224 (476)
T PLN00028        147 WMSTMFNGKIVGTANGIAAGWGNLGGGVTQLLMPLVFPLIKDAGAPSFTAWRIAFFVPGLLHIIMGILVLTLGQDLPD--  224 (476)
T ss_pred             HHHHhcChhheeHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcchhhhHHHHHHHHHHHHHHHHHHHHHcCcCCC--
Confidence            789999999999999999877777766665442 11    11     2589999999998888777444444444432  


Q ss_pred             HhcCCHHHHHHHHHHHhhhcCCCCCCCccccccCCCCCccccCCCcccccccHHHHhccHHHHHHHHHHHHHHHHHHHHH
Q 039541          266 FIHGHEAEAMAVLKRLASRSNYQSDYGLESCCLSNMPPKAKNVIPKLDLYSSLKDLFNRKWALRRLLTIMALAFGIGVVY  345 (521)
Q Consensus       266 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~  345 (521)
                         ++.++.+       + . ..                    .++.+....+++.+++++.+...+..+..........
T Consensus       225 ---~~~~~~~-------~-~-~~--------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  272 (476)
T PLN00028        225 ---GNYRELK-------K-S-GT--------------------MPKDSFSKVLRYGVTNYRTWILALTYGYSFGVELTMD  272 (476)
T ss_pred             ---CchhhHH-------h-c-Cc--------------------cccccHHHHHHHHHcCchhHHHHHHHHHHHHHHHHHH
Confidence               1100000       0 0 00                    0000001245666777775544333222222212222


Q ss_pred             HhHH-hhccCCCccHHH---HHHHHHHHhHhHHHHHHHHHhhcCCch-------HHHHHHHHHHHHHHHHHhcCCchHHH
Q 039541          346 FGLL-LGVGNLSFNIYL---SLAFNGLLDIPAYLLTFILIERWSRKS-------SILTFCILSGTCSAICVAIGDEQEVL  414 (521)
Q Consensus       346 ~~~~-~~~~~~~~~~~~---~~~~~~~~~~~~~~~~g~l~dr~g~~~-------~~~~~~~~~~i~~~~~~~~~~~~~~~  414 (521)
                      ...| ++.++.+.+...   ...+..+++++++++.|+++||++||+       ...+...+.++.++++....  +.+.
T Consensus       273 ~~~p~~l~~~~g~s~~~a~~~~~~~~~~~~ig~~~~G~lsDr~~~r~~~~~r~~~~~~~~~l~~i~~~~~~~~~--~~~~  350 (476)
T PLN00028        273 NIIAEYFYDRFGLSLETAGAIAASFGLMNLFARPAGGYLSDVAARRFGMRGRLWALWIVQTLGGVFCIWLGRAN--SLGA  350 (476)
T ss_pred             hHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhcCcchhHHHHHHHHHHHHHHHHHhcccc--hHHH
Confidence            2233 333445655433   334556778899999999999998652       22223333333333222222  1233


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhccccCchhhhhhhHHHHHhhhhhhhHHHHHHHhh-ccchhHHHHHHHHHHHHHhHhh
Q 039541          415 QIGLELASFFSACVAFNVLLVFGTELFTTCVRNSTTSLVRQAVNLGAAFSPVLISAG-RQNEFLSFGVFGLVVFCFGFFV  493 (521)
Q Consensus       415 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~p~~~~~~-~~~~~~~~~~~~~~~~~~~~~~  493 (521)
                      ..+.+++.+++.+...+..+.+..+..| +.++++.|+.+..+.+|++++|.+.+.. ..++...|.+.+++.+++.++.
T Consensus       351 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~-~~~g~~~g~~~~~g~lg~~i~~~l~~~~~~~~y~~~f~~~~~~~~i~~~~~  429 (476)
T PLN00028        351 AIVVMILFSIFVQAACGATFGIVPFVSR-RSLGVISGLTGAGGNVGAVLTQLLFFTGSSYSTETGISLMGVMIIACTLPV  429 (476)
T ss_pred             HHHHHHHHHHHHHHhhhhhcccCcccCh-hhchhhhhhhhccccHHHHHHHHHHHhcCCccHhhHHHHHHHHHHHHHHHH
Confidence            4445556666666666677777777655 6789999999998889999999887643 2347778888888888877766


Q ss_pred             hccc
Q 039541          494 VFLP  497 (521)
Q Consensus       494 ~~~~  497 (521)
                      ++++
T Consensus       430 ~~~~  433 (476)
T PLN00028        430 AFIH  433 (476)
T ss_pred             Hhee
Confidence            5553

>PRK10213 nepI ribonucleoside transporter; Reviewed

Probab=100.00  E-value=6.7e-31  Score=257.16  Aligned_cols=333  Identities=12%  Similarity=0.112  Sum_probs=245.2

Q ss_pred             CcceeeecceeeCCccccchhhHHHHHHHHHHhhhhhhhccccCCCCchHHHHHHHHHHHHHHHHHhccccHHHHHHHHH
Q 039541          101 DTTIISDWSLECAGSSILSGLPSSCFFIGCLLGGLALSTLGDSSSLGRKKLLFLSCFAMSITALATIFANNIWIYSTIRF  180 (521)
Q Consensus       101 ~~~i~~~~~~~~~~~~~~~~~~~s~~~lg~~i~~~~~g~l~dr~~~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~  180 (521)
                      +|.+.+++|+++++.    ++..+++.++..+++++.|+++||  +|||++++.+.++.+++.++++++++++.+++.|+
T Consensus        43 l~~~~~~~g~s~~~~----g~~~~~~~~~~~~~~~~~g~l~Dr--~grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~  116 (394)
T PRK10213         43 LTPMAQDLGISEGVA----GQSVTVTAFVAMFASLFITQTIQA--TDRRYVVILFAVLLTLSCLLVSFANSFSLLLIGRA  116 (394)
T ss_pred             HHHHHHHcCCCHHHH----HHHHHHHHHHHHHHHHHHHHHhcc--cCcHHHHHHHHHHHHHHHHHHHHHChHHHHHHHHH
Confidence            788999999999777    999999999999999999999999  99999999999999999999999999999999999


Q ss_pred             HhhccchhhHhhhhhheeeeecCcchhHHHHHHHHHHHHHHHHHHHH-HHhhcCCchhHHHHHHHHHHHHHHhhhceeee
Q 039541          181 VAGFFRAPIMTSVIVLLSEMVSKRWRGQVVIIGFTFFSFGLVSLPAV-AYLSRGSSWKMLYVWTSIPSIVCCIIIYPFIS  259 (521)
Q Consensus       181 l~G~~~g~~~~~~~~~i~~~~~~~~rg~~~~~~~~~~~~G~~i~~~i-~~~~~~~~wr~~f~~~~~~~~~~~~~~~~~~~  259 (521)
                      ++|++.+...+...+++.|++|+++|++++++...+.++|.+++|.+ +.+.+.++||+.|++.+++.++..+.....+|
T Consensus       117 l~G~~~g~~~~~~~~~i~~~~~~~~~~~a~~~~~~~~~~g~~ig~~l~~~l~~~~gw~~~f~~~~~l~~~~~l~~~~~~p  196 (394)
T PRK10213        117 CLGLALGGFWAMSASLTMRLVPPRTVPKALSVIFGAVSIALVIAAPLGSFLGELIGWRNVFNAAAVMGVLCIFWIIKSLP  196 (394)
T ss_pred             HHHHhhHHHHHHHHHHHHHHcCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHCC
Confidence            99999999999999999999999999999999999999999999999 56777789999999988777765534444456


Q ss_pred             cchhHHHhcCCHHHHHHHHHHHhhhcCCCCCCCccccccCCCCCccccCCCcccccccHHHHhccHHHHHHHHHHHHHHH
Q 039541          260 ESPRWLFIHGHEAEAMAVLKRLASRSNYQSDYGLESCCLSNMPPKAKNVIPKLDLYSSLKDLFNRKWALRRLLTIMALAF  339 (521)
Q Consensus       260 esp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~  339 (521)
                      |+|+.     + ++                                        ...+.++.+++|.++...+..+....
T Consensus       197 ~~~~~-----~-~~----------------------------------------~~~~~~~~l~~~~~~~~~~~~~~~~~  230 (394)
T PRK10213        197 SLPGE-----P-SH----------------------------------------QKQNTFRLLQRPGVMAGMIAIFMSFA  230 (394)
T ss_pred             CCCcc-----c-cc----------------------------------------chhHHHHHhcCHHHHHHHHHHHHHHH
Confidence            54310     0 00                                        00134567788877665444333333


Q ss_pred             HHHH-HHHhHHhhccCCCccHHH---HHHHHHHHhHhHHHHHHHHHhhcCCchHHHHHHHHHHHHHHHHHhcCCchHHHH
Q 039541          340 GIGV-VYFGLLLGVGNLSFNIYL---SLAFNGLLDIPAYLLTFILIERWSRKSSILTFCILSGTCSAICVAIGDEQEVLQ  415 (521)
Q Consensus       340 ~~~~-~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~  415 (521)
                      .... ..+..|.+.++.+.+...   .....+++.+++.++.+++.||.+++.............+++......  .+..
T Consensus       231 ~~~~~~~~~~p~~~~~~g~s~~~~g~~~~~~~~~~iig~~~~~~l~~r~~~~~l~~~~~~~~~~~~~l~~~~~~--~~~~  308 (394)
T PRK10213        231 GQFAFFTYIRPVYMNLAGFGVDGLTLVLLSFGIASFVGTSLSSFILKRSVKLALAGAPLVLAVSALVLTLWGSD--KIVA  308 (394)
T ss_pred             HHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHhhh--HHHH
Confidence            3322 233346666666665433   334456778889999999999965443333333323333333322222  2455


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhccccCchhhhhhhHHHHHhhhhhhhHHHHHHHhh--ccchhHHHHHHHHHHHH
Q 039541          416 IGLELASFFSACVAFNVLLVFGTELFTTCVRNSTTSLVRQAVNLGAAFSPVLISAG--RQNEFLSFGVFGLVVFC  488 (521)
Q Consensus       416 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~p~~~~~~--~~~~~~~~~~~~~~~~~  488 (521)
                      ....++.|++.+...+...+++.+..|++ ++.+.+......++|..+||.+.|..  ..+....+...+.+.++
T Consensus       309 ~~~~~l~G~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~lg~~~G~~l~G~l~~~~g~~~~~~~~~~~~~~  382 (394)
T PRK10213        309 TGVAIIWGLTFALVPVGWSTWITRSLADQ-AEKAGSIQVAVIQLANTCGAAIGGYALDNIGLTSPLMLSGTLMLL  382 (394)
T ss_pred             HHHHHHHHHHHHhhhHHHHHHHHHHCccc-HHHHHHHHHHHHHHHHHHHHHHHHHHHhccChhhHHHHHHHHHHH
Confidence            56677788888888888888888888744 56777777778889999999999873  23444555554444333

>PRK03893 putative sialic acid transporter; Provisional

Probab=100.00  E-value=1.7e-31  Score=271.07  Aligned_cols=389  Identities=18%  Similarity=0.163  Sum_probs=261.6

Q ss_pred             CChhHHHHHHHHHHHHHHHHHHHhhhhccccCCcccccCCcccccCCccccccccCcceecCCCCcceeeecceeeCCcc
Q 039541           37 LGLPQFIQVILISLLLIFESQQTFISVYTDEEPTWHCINNTTTCSSSSDICTLSKSAWAWDRPSDTTIISDWSLECAGSS  116 (521)
Q Consensus        37 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~p~~~c~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~i~~~~~~~~~~~~  116 (521)
                      ..+.+|+.+..++++.+++.++....++.                                   .|.+.+++|++.++. 
T Consensus        14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------------------------------~~~i~~~~~~s~~~~-   57 (496)
T PRK03893         14 LNRAQWKAFSAAWLGYLLDGFDFVLITLV-----------------------------------LTEVQGEFGLTTVQA-   57 (496)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------------------------------HHHHHHHhCCCHHHH-
Confidence            34567888888999999999999999988                                   899999999999776 


Q ss_pred             ccchhhHHHHHHHHHHhhhhhhhccccCCCCchHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHhhccchhhHhhhhhh
Q 039541          117 ILSGLPSSCFFIGCLLGGLALSTLGDSSSLGRKKLLFLSCFAMSITALATIFANNIWIYSTIRFVAGFFRAPIMTSVIVL  196 (521)
Q Consensus       117 ~~~~~~~s~~~lg~~i~~~~~g~l~dr~~~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~  196 (521)
                         +++.+.+.++..+++++.|+++||  +|||++++++.++.+++.++.+++++++.+++.|++.|++.+...+....+
T Consensus        58 ---~~~~~~~~~~~~~~~~~~g~l~dr--~g~r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~  132 (496)
T PRK03893         58 ---ASLISAAFISRWFGGLLLGAMGDR--YGRRLAMVISIVLFSVGTLACGFAPGYWTLFIARLVIGMGMAGEYGSSATY  132 (496)
T ss_pred             ---HHHHHHHHHHHHHHHHHHHHHHHH--hCcHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence               999999999999999999999999  999999999999999999999999999999999999999999999999999


Q ss_pred             eeeeecCcchhHHHHHHHHHHHHHHHHHHHH-HHhhcCCchhHHHHHHHHHHHHHHhhhceeeecchhHHHhcCCHHHHH
Q 039541          197 LSEMVSKRWRGQVVIIGFTFFSFGLVSLPAV-AYLSRGSSWKMLYVWTSIPSIVCCIIIYPFISESPRWLFIHGHEAEAM  275 (521)
Q Consensus       197 i~~~~~~~~rg~~~~~~~~~~~~G~~i~~~i-~~~~~~~~wr~~f~~~~~~~~~~~~~~~~~~~esp~~~~~~~~~~~~~  275 (521)
                      +.|++|+++|++++++...+..+|..++|.+ +.+.+..+||+.|++.++..++.. +....+||++++...+++.++.+
T Consensus       133 ~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~w~~~f~~~~~~~~~~~-~~~~~~p~~~~~~~~~~~~~~~~  211 (496)
T PRK03893        133 VIESWPKHLRNKASGFLISGFSIGAVVAAQVYSLVVPVWGWRALFFIGILPIIFAL-WLRKNLPEAEDWKEKHAGKAPVR  211 (496)
T ss_pred             HHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHH-HHHHhCCCchhhhhhccccccch
Confidence            9999999999999999999999999999988 677788899999987655544443 44555677654322111110000


Q ss_pred             HHHHHHhhhcCCCCCCCccccccCCCCCccccCCCcccccccHHHHhc---------------------------cHHHH
Q 039541          276 AVLKRLASRSNYQSDYGLESCCLSNMPPKAKNVIPKLDLYSSLKDLFN---------------------------RKWAL  328 (521)
Q Consensus       276 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~---------------------------~~~~~  328 (521)
                      +..+...+ .+..                .................+.                           ++..+
T Consensus       212 ~~~~~~~~-~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  274 (496)
T PRK03893        212 TMVDILYR-GEHR----------------IINILLTLAAAAALWFCFAGNLQNAAIVAVLGLLCAAIFISFMVQSSGKRW  274 (496)
T ss_pred             hHHHHHhc-chhH----------------HHHHHHHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHHHHHHHhcccch
Confidence            00000000 0000                0000000000000000000                           00000


Q ss_pred             HHHHHHHHHHHHHH----HHHHhHHhhc-cCCCccHHH---HHHHHHHHhHhHHHHHHHHHhhcCCchHHHHHHHHHHHH
Q 039541          329 RRLLTIMALAFGIG----VVYFGLLLGV-GNLSFNIYL---SLAFNGLLDIPAYLLTFILIERWSRKSSILTFCILSGTC  400 (521)
Q Consensus       329 ~~~~~~~~~~~~~~----~~~~~~~~~~-~~~~~~~~~---~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~i~  400 (521)
                      ..........+...    .....+|.++ ++.+.+...   ......++.+++.++.|++.||++||+.+..+..+..+.
T Consensus       275 ~~~~~~~~~~~~~~~~~~~~~~~lp~~l~~~~g~~~~~~g~~~~~~~~~~~~g~~~~g~l~dr~g~~~~~~~~~~~~~~~  354 (496)
T PRK03893        275 PTGVMLMVVVLFAFLYSWPIQALLPTYLKTDLGYDPHTVANVLFFSGFGAAVGCCVGGFLGDWLGTRKAYVCSLLISQLL  354 (496)
T ss_pred             hHHHHHHHHHHHHHhccchHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHH
Confidence            00000000000000    1112345555 466665433   334556778889999999999999999888877666655


Q ss_pred             HHHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHhhccccCchhhhhhhHHHHHhhhhhhhHHHHHHHhh--ccchhHH
Q 039541          401 SAICVAIGDEQEVLQIGLELASFFSACVAFNVLLVFGTELFTTCVRNSTTSLVRQAVNLGAAFSPVLISAG--RQNEFLS  478 (521)
Q Consensus       401 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~p~~~~~~--~~~~~~~  478 (521)
                      .+.+........+......++.++......+....+..|.+|++.|++++|+.+....+|+.++|.+.|..  ..++...
T Consensus       355 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~lgp~l~g~l~~~~g~~~~  434 (496)
T PRK03893        355 IIPVFAIGGANVWVLGLLLFFQQMLGQGISGLLPKLIGGYFDTEQRAAGLGFTYNVGALGGALAPILGALIAQRLDLGTA  434 (496)
T ss_pred             HHHHhhccccHHHHHHHHHHHHHHHhcccchhhHHHHHhhCCHHHhhcccchhhhhhhHHHHHHHHHHHHHhccCChHHH
Confidence            54443333332222222223333333334456677889999999999999999999999999999999863  2344444


Q ss_pred             HHHHHH
Q 039541          479 FGVFGL  484 (521)
Q Consensus       479 ~~~~~~  484 (521)
                      +...+.
T Consensus       435 ~~~~~~  440 (496)
T PRK03893        435 LASLSF  440 (496)
T ss_pred             HHHHHH
Confidence            444433

>PRK15034 nitrate/nitrite transport protein NarU; Provisional

Probab=100.00  E-value=5.6e-31  Score=254.83  Aligned_cols=369  Identities=11%  Similarity=0.039  Sum_probs=268.4

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHhhhhccccCCcccccCCcccccCCccccccccCcceecCCCCcceee-ecceeeCCccc
Q 039541           39 LPQFIQVILISLLLIFESQQTFISVYTDEEPTWHCINNTTTCSSSSDICTLSKSAWAWDRPSDTTIIS-DWSLECAGSSI  117 (521)
Q Consensus        39 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~p~~~c~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~i~~-~~~~~~~~~~~  117 (521)
                      +-.++.+.+..++.+.........+++                                   .+.+.+ ++|++.+|.  
T Consensus        30 ~~a~r~l~~s~~~f~~~F~~w~~~~~l-----------------------------------~~~~~~~~~~ls~~q~--   72 (462)
T PRK15034         30 HIARRNLWISVSCLLLAFCVWMLFSAV-----------------------------------TVNLNKIGFNFTTDQL--   72 (462)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHH-----------------------------------HHHhhhhhcCCCHHHH--
Confidence            445667777777877877888888887                                   777766 899999777  


Q ss_pred             cchhhHHHHHHHHHHhhhhhhhccccCCCCchHHHHHHHHHHHHHHHHHhcc-----ccHHHHHHHHHHhhccchhhHhh
Q 039541          118 LSGLPSSCFFIGCLLGGLALSTLGDSSSLGRKKLLFLSCFAMSITALATIFA-----NNIWIYSTIRFVAGFFRAPIMTS  192 (521)
Q Consensus       118 ~~~~~~s~~~lg~~i~~~~~g~l~dr~~~Grr~~l~~~~~~~~~~~~~~~~~-----~~~~~l~~~r~l~G~~~g~~~~~  192 (521)
                        +++.+++.+++.++.++.|++.||  +|.|+++.++.++.++.+++.+++     +|++.+++.|++.|++ |..++.
T Consensus        73 --g~l~ai~~l~~al~rip~G~l~Dr--~G~R~v~~~~~ll~~i~~~~~~~a~~~~~~s~~~lli~r~l~Gig-g~~f~~  147 (462)
T PRK15034         73 --FLLTALPSVSGALLRVPYSFMVPI--FGGRRWTVFSTAILIIPCVWLGIAVQNPNTPFGIFIVIALLCGFA-GANFAS  147 (462)
T ss_pred             --HHHHHHHHHHHHHHHHHHHHHHHH--hCChHHHHHHHHHHHHHHHHHHHHHcccCCCHHHHHHHHHHHHHH-HHhHHH
Confidence              999999999999999999999999  999999999999999999999987     8999999999999998 778999


Q ss_pred             hhhheeeeecCcchhHHHHHHHHHHHHHHHHHHHHH-----H-hhc-------------CCchhHHHHHHHHHHHHHHhh
Q 039541          193 VIVLLSEMVSKRWRGQVVIIGFTFFSFGLVSLPAVA-----Y-LSR-------------GSSWKMLYVWTSIPSIVCCII  253 (521)
Q Consensus       193 ~~~~i~~~~~~~~rg~~~~~~~~~~~~G~~i~~~i~-----~-~~~-------------~~~wr~~f~~~~~~~~~~~~~  253 (521)
                      ....+++|+|+++||+++|+.....++|..+++++.     . +..             ..+||...++..++.++..++
T Consensus       148 ~~~~vs~wfp~~~rG~A~Gi~~g~G~~G~~l~~~l~p~~i~~~l~~~~G~~~~~~~~g~~~~~~~~~~~~~~~~iv~~i~  227 (462)
T PRK15034        148 SMGNISFFFPKAKQGSALGINGGLGNLGVSVMQLVAPLVIFVPVFAFLGVNGVPQADGSVMSLANAAWIWVPLLAIATIA  227 (462)
T ss_pred             HHHHHHHHCCHhHhHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhccccccccccchHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999766666665544331     1 111             334888888888877777756


Q ss_pred             hceeeecchhHHHhcCCHHHHHHHHHHHhhhcCCCCCCCccccccCCCCCccccCCCcccccccHHHHhccHHHHHHHHH
Q 039541          254 IYPFISESPRWLFIHGHEAEAMAVLKRLASRSNYQSDYGLESCCLSNMPPKAKNVIPKLDLYSSLKDLFNRKWALRRLLT  333 (521)
Q Consensus       254 ~~~~~~esp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~  333 (521)
                      .++++++.|..   +.                                            ...+.++.+|+|+.|...+.
T Consensus       228 ~~~~~~~~~~~---~~--------------------------------------------~~~~~~~vlk~~~~Wllsll  260 (462)
T PRK15034        228 AWSGMNDIASS---RA--------------------------------------------SIADQLPVLQRLHLWLLSLL  260 (462)
T ss_pred             HHHhCCCcccc---cc--------------------------------------------CHHHHHHHhCCCchhHHHHH
Confidence            66655543310   00                                            00245678899987776666


Q ss_pred             HHHHHHHHHHHHHhHHhhccC-CCc-cHHHHHHHHHHHhHhHHHHHHHHHhhcCCchHHHHHHHHHHHHHHHHH-hcCCc
Q 039541          334 IMALAFGIGVVYFGLLLGVGN-LSF-NIYLSLAFNGLLDIPAYLLTFILIERWSRKSSILTFCILSGTCSAICV-AIGDE  410 (521)
Q Consensus       334 ~~~~~~~~~~~~~~~~~~~~~-~~~-~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~i~~~~~~-~~~~~  410 (521)
                      .+..+.......+.+|++.++ ++. +......+..+...++++++|+++||+|+++++.++++.+.++..... ..+..
T Consensus       261 y~~tFG~fvg~s~~lp~~~~~~~~~~~~l~~~~l~~l~~~l~rplgG~LADRiG~~~vl~~~~i~~~i~~~~~~l~lp~~  340 (462)
T PRK15034        261 YLATFGSFIGFSAGFAMLAKTQFPDVNILRLAFFGPFIGAIARSVGGAISDKFGGVRVTLINFIFMAIFSALLFLTLPGT  340 (462)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHcChHHHHHHHHHHHHHHHHHHHhhHHHHHhcCchHHHHHHHHHHHHHHHHHHHHhccc
Confidence            655554444445455555544 211 122223344566778889999999999999999988887777654332 22221


Q ss_pred             ---hHHHHHHHHHHHHHHHHHHHHHHHHhhccccCc---------------------hhhhhhhHHHHHhhhhhhhHHHH
Q 039541          411 ---QEVLQIGLELASFFSACVAFNVLLVFGTELFTT---------------------CVRNSTTSLVRQAVNLGAAFSPV  466 (521)
Q Consensus       411 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------------~~r~~~~~~~~~~~~~g~~~~p~  466 (521)
                         +.+...+.++...++.+......+-++.+.+|+                     ++.|.+.|+....+.+|+++.|.
T Consensus       341 ~~~~~~~~~~~~~~l~~~~G~gngsvfk~ip~~f~~~~~~~~~~~~~~~~~~~~~~~~~~g~v~G~v~a~G~~Ggf~~p~  420 (462)
T PRK15034        341 GSGNFIAFYAVFMGLFLTAGLGSGSTFQMIAVIFRQITIYRVKMKGGSDEQAQREAVTETAAALGFISAIGAVGGFFIPQ  420 (462)
T ss_pred             cccHHHHHHHHHHHHHHHhcccchHHHHhhHHHHhhhhhhcccccccchhHHhhHHHHHHHHHHHHHHHHHHcccchhhH
Confidence               123444444445556666667777777777774                     14588899999999999999998


Q ss_pred             HHHhh---ccchhHHHHHHHHHHHHHhHhhhcc
Q 039541          467 LISAG---RQNEFLSFGVFGLVVFCFGFFVVFL  496 (521)
Q Consensus       467 ~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~  496 (521)
                      +.+..   ..++...+..+.+..+++.++.++.
T Consensus       421 ~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~w~~  453 (462)
T PRK15034        421 AFGMSLNMTGSPVGAMKVFLIFYIVCVLLTWLV  453 (462)
T ss_pred             HHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHH
Confidence            88753   2446667777777777766664443

>PRK15075 citrate-proton symporter; Provisional

Probab=100.00  E-value=6.9e-31  Score=261.00  Aligned_cols=347  Identities=15%  Similarity=0.109  Sum_probs=233.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHhhhhccccCCcccccCCcccccCCccccccccCcceecCCCCcceeeecceeeCCccccch
Q 039541           41 QFIQVILISLLLIFESQQTFISVYTDEEPTWHCINNTTTCSSSSDICTLSKSAWAWDRPSDTTIISDWSLECAGSSILSG  120 (521)
Q Consensus        41 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~p~~~c~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~  120 (521)
                      +++....++++.+++.+|...+++.                                   .|.+.+|++.++.+.    +
T Consensus        13 ~~~~~~~~~~~~~~~~~d~~~~~~~-----------------------------------~~~i~~~~~~~~~~~----~   53 (434)
T PRK15075         13 KARAILRVTSGNFLEMFDFFLFGFY-----------------------------------ATAIAKTFFPAGNEF----A   53 (434)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHH-----------------------------------HHHHHHHhCCCCCch----H
Confidence            3456778889999999999999999                                   999999999987664    4


Q ss_pred             hh-HHHH-----HHHHHHhhhhhhhccccCCCCchHHHHHHHHHHHHHHHHHhccccHH--------HHHHHHHHhhccc
Q 039541          121 LP-SSCF-----FIGCLLGGLALSTLGDSSSLGRKKLLFLSCFAMSITALATIFANNIW--------IYSTIRFVAGFFR  186 (521)
Q Consensus       121 ~~-~s~~-----~lg~~i~~~~~g~l~dr~~~Grr~~l~~~~~~~~~~~~~~~~~~~~~--------~l~~~r~l~G~~~  186 (521)
                      .+ .+..     .++..+++++.|+++||  +|||++++.+.+++++++++++++++++        .++++|+++|++.
T Consensus        54 ~~~~~~~~~~~~~l~~~ig~~~~G~l~Dr--~Grr~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~R~l~G~~~  131 (434)
T PRK15075         54 SLMLTFAVFGAGFLMRPLGAIVLGAYIDR--VGRRKGLIVTLSIMASGTLLIAFVPGYATIGLAAPLLVLLGRLLQGFSA  131 (434)
T ss_pred             HHHHHHHHHHHHHHHhhhHHHHHHHHhhh--hchHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHhhccc
Confidence            33 2222     33335789999999999  9999999999999999999999999987        4689999999999


Q ss_pred             hhhHhhhhhheeeeecCcchhHHHHHHHHHHHHHHHHHHHHHHhh---------cCCchhHHHHHHHHHHHHHHhhhcee
Q 039541          187 APIMTSVIVLLSEMVSKRWRGQVVIIGFTFFSFGLVSLPAVAYLS---------RGSSWKMLYVWTSIPSIVCCIIIYPF  257 (521)
Q Consensus       187 g~~~~~~~~~i~~~~~~~~rg~~~~~~~~~~~~G~~i~~~i~~~~---------~~~~wr~~f~~~~~~~~~~~~~~~~~  257 (521)
                      |...+....++.|++|+++|++++++...+..+|..+++.++..+         +.+|||++|++..+...+.. .....
T Consensus       132 g~~~~~~~~~~~e~~p~~~rg~~~~~~~~~~~~g~~~g~~~g~~l~~~~~~~~~~~~gWr~~f~~~~~~~~~~~-~~~~~  210 (434)
T PRK15075        132 GVELGGVSVYLAEIATPGRKGFYTSWQSASQQVAVVFAALLGYLLNQWLSPAQMAEWGWRIPFLIGCLIVPFIF-LIRRS  210 (434)
T ss_pred             cccHHHHHHHHHhhCCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHhccchHHHHHHHHHHHHHHH-HHHHh
Confidence            999999999999999999999999999988888888877774332         46899999997654433222 22223


Q ss_pred             eecchhHHHhcCCHHHHHHHHHHHhhhcCCCCCCCccccccCCCCCccccCCCcccccccHHHHhccHHHHHHHHH-HHH
Q 039541          258 ISESPRWLFIHGHEAEAMAVLKRLASRSNYQSDYGLESCCLSNMPPKAKNVIPKLDLYSSLKDLFNRKWALRRLLT-IMA  336 (521)
Q Consensus       258 ~~esp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~-~~~  336 (521)
                      .||++++...+              + +                       .   +.+..++...++++.+..... ...
T Consensus       211 ~~e~~~~~~~~--------------~-~-----------------------~---~~~~~~~~~~~~~~~~~~~~~~~~~  249 (434)
T PRK15075        211 LEETEEFLARK--------------H-R-----------------------P---SMREIFRSLAANWRIVLAGMLMVAM  249 (434)
T ss_pred             cCCCHHHHHhh--------------h-c-----------------------c---ccccHHHHHHHhHHHHHHHHHHHHH
Confidence            33332110000              0 0                       0   000123333444332222111 111


Q ss_pred             HHHHHHHHHHhHHhhccC-CCccHHH---HHHHHHHHhHhHHHHHHHHHhhcCCchHHHHHHHHHHHHHH-HHH-hcCCc
Q 039541          337 LAFGIGVVYFGLLLGVGN-LSFNIYL---SLAFNGLLDIPAYLLTFILIERWSRKSSILTFCILSGTCSA-ICV-AIGDE  410 (521)
Q Consensus       337 ~~~~~~~~~~~~~~~~~~-~~~~~~~---~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~i~~~-~~~-~~~~~  410 (521)
                      .........+..|.++++ .+.+...   ......++++++.++.|+++||+|||+.+..+..+..+... .+. .....
T Consensus       250 ~~~~~~~~~~~~p~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~Dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~  329 (434)
T PRK15075        250 TTVSFYLITVYTPTFGKTVLHLSAADSLLVTLCVGVSNFIWLPIGGALSDRIGRRPVLIAFTVLAILTAYPALSWLVAAP  329 (434)
T ss_pred             HHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence            222223333334555443 5655332   33445677788999999999999999987776554433221 111 11222


Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHhhccccCchhhhhhhHHHHHhhhh-hhhHHHHHHHh
Q 039541          411 QEVLQIGLELASFFSACVAFNVLLVFGTELFTTCVRNSTTSLVRQAVNL-GAAFSPVLISA  470 (521)
Q Consensus       411 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~-g~~~~p~~~~~  470 (521)
                      .........++.+++.+...+..+.+..|.+|++.|+++.++.+..... ++.++|.+.++
T Consensus       330 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~e~~p~~~rg~~~g~~~~~~~~~~g~~~p~~~g~  390 (434)
T PRK15075        330 SFARMLAVELWLSFLYGSYNGAMVVALTEVMPAEVRTAGFSLAYSLATAIFGGFTPAISTW  390 (434)
T ss_pred             chHHHHHHHHHHHHHHHHHHhhHHHHHHHHCCCCccchheeHHHHHHHHHHhhhHHHHHHH
Confidence            1122223334445566666666778899999999999999997665554 57788998876

>PRK10504 putative transporter; Provisional

Probab=100.00  E-value=6.6e-31  Score=264.71  Aligned_cols=381  Identities=12%  Similarity=0.054  Sum_probs=273.2

Q ss_pred             HHHHHHHHHHHHHHHHhhhhccccCCcccccCCcccccCCccccccccCcceecCCCCcceeeecceeeCCccccchhhH
Q 039541           44 QVILISLLLIFESQQTFISVYTDEEPTWHCINNTTTCSSSSDICTLSKSAWAWDRPSDTTIISDWSLECAGSSILSGLPS  123 (521)
Q Consensus        44 ~~~~~~l~~~~~~~~~~~~~~~~~~p~~~c~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~  123 (521)
                      .+.+++++.++..++.......                                   +|.+.+++|.+..+.    +++.
T Consensus        11 ~~~~~~~~~~~~~~~~~~~~~~-----------------------------------~p~~~~~~g~s~~~~----~~~~   51 (471)
T PRK10504         11 QLWIVAFGFFMQSLDTTIVNTA-----------------------------------LPSMAQSLGESPLHM----HMVI   51 (471)
T ss_pred             HHHHHHHHHHHHHHhHHHHHHH-----------------------------------HHHHHHHhCcCHHHH----HHHH
Confidence            3455667778888888877778                                   899999999999766    9999


Q ss_pred             HHHHHHHHHhhhhhhhccccCCCCchHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHhhccchhhHhhhhhheeeeecC
Q 039541          124 SCFFIGCLLGGLALSTLGDSSSLGRKKLLFLSCFAMSITALATIFANNIWIYSTIRFVAGFFRAPIMTSVIVLLSEMVSK  203 (521)
Q Consensus       124 s~~~lg~~i~~~~~g~l~dr~~~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~  203 (521)
                      +.+.++..++.+++|+++||  +|||++++.+.++.+++.++++++++++.+++.|+++|++.+...+...+++.|++|+
T Consensus        52 ~~~~~~~~~~~~~~g~l~d~--~g~r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~  129 (471)
T PRK10504         52 VSYVLTVAVMLPASGWLADR--VGVRNIFFTAIVLFTLGSLFCALSGTLNELLLARVLQGVGGAMMVPVGRLTVMKIVPR  129 (471)
T ss_pred             HHHHHHHHHHHHHHHHHHHH--hchHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhhHHHHHHHHHHHHHHcCH
Confidence            99999999999999999999  9999999999999999999999999999999999999999999999999999999999


Q ss_pred             cchhHHHHHHHHHHHHHHHHHHHH-HHhhcCCchhHHHHHHHHHHHHHHhhhceeeecchhHHHhcCCHHHHHHHHH---
Q 039541          204 RWRGQVVIIGFTFFSFGLVSLPAV-AYLSRGSSWKMLYVWTSIPSIVCCIIIYPFISESPRWLFIHGHEAEAMAVLK---  279 (521)
Q Consensus       204 ~~rg~~~~~~~~~~~~G~~i~~~i-~~~~~~~~wr~~f~~~~~~~~~~~~~~~~~~~esp~~~~~~~~~~~~~~~~~---  279 (521)
                      ++|+++.++.....++|..++|.+ +.+.+..+||+.|++..+..++..++.....|+.+..   +.+.+.......   
T Consensus       130 ~~~~~~~~~~~~~~~~g~~~g~~~~g~l~~~~gw~~~f~~~~~~~~l~~~~~~~~~~~~~~~---~~r~~~~~~~~~~~~  206 (471)
T PRK10504        130 EQYMAAMTFVTLPGQVGPLLGPALGGLLVEYASWHWIFLINIPVGIIGAIATLMLMPNYTMQ---TRRFDLSGFLLLAVG  206 (471)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHhCCCcccc---CCCCChHHHHHHHHH
Confidence            999999999999999999999998 6777888999999998877776665555555554321   111111111000   


Q ss_pred             ----HHhhhcCCCCCCCcccc-ccC-----CC-CCccccCCCcccccccHHHHhccHHHHHHHHHHHHHHHHHHHHHHhH
Q 039541          280 ----RLASRSNYQSDYGLESC-CLS-----NM-PPKAKNVIPKLDLYSSLKDLFNRKWALRRLLTIMALAFGIGVVYFGL  348 (521)
Q Consensus       280 ----~~~~~~~~~~~~~~~~~-~~~-----~~-~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  348 (521)
                          ......+.......... ...     .. ....+++ +..+...+. +++++|.++..+...++..+......+..
T Consensus       207 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~-~l~~~~~~~~~l~~~~~~~~~~~~~~~~~  284 (471)
T PRK10504        207 MATLTLALDGSKGLGLSPLAIAGLVAVGVVALLLYLLHAR-NNNRALFSL-KLFRTRTFSLGLAGSFAGRIGSGMLPFMT  284 (471)
T ss_pred             HHHHHHHHhcCCcCCcchHHHHHHHHHHHHHHHHHHHHHh-cCCCCccCH-HHhcccchHHHHHHHHHHHHHHHHHHHHH
Confidence                00000000000000000 000     00 0000000 000111133 47889887776666666666665556667


Q ss_pred             HhhccC-CCccHHHHH---HHHHHHhHhHHHHHHHHHhhcCCchHHHHHHHHHHHHHHHHHhcCCchH-HHHHHHHHHHH
Q 039541          349 LLGVGN-LSFNIYLSL---AFNGLLDIPAYLLTFILIERWSRKSSILTFCILSGTCSAICVAIGDEQE-VLQIGLELASF  423 (521)
Q Consensus       349 ~~~~~~-~~~~~~~~~---~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~i~~~~~~~~~~~~~-~~~~~~~~~~~  423 (521)
                      |++++. .+.+.....   ....++.+++.++.+++.||+|+|+++..+..+.++...++.+...... +......++.+
T Consensus       285 ~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g  364 (471)
T PRK10504        285 PVFLQIGLGFSPFHAGLMMIPMVLGSMGMKRIVVQVVNRFGYRRVLVATTLGLALVSLLFMLVALLGWYYLLPFVLFLQG  364 (471)
T ss_pred             HHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHH
Confidence            776653 565543333   3344556667788999999999999999888877777666655432222 22334455666


Q ss_pred             HHHHHHHHHHHHhhccccCchhhhhhhHHHHHhhhhhhhHHHHHHHh
Q 039541          424 FSACVAFNVLLVFGTELFTTCVRNSTTSLVRQAVNLGAAFSPVLISA  470 (521)
Q Consensus       424 ~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~p~~~~~  470 (521)
                      ++.+..++....+..+.+|++.++.++++.++...+|..++|.+.+.
T Consensus       365 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~ig~~i~g~  411 (471)
T PRK10504        365 MVNSTRFSSMNTLTLKDLPDNLASSGNSLLSMIMQLSMSIGVTIAGL  411 (471)
T ss_pred             HHHHHHHHHHHHHHHHcCCHHhccchHHHHHHHHHHHHHHHHHHHHH
Confidence            77777888888999999999999999999999999999999988874

>PF00083 Sugar_tr: Sugar (and other) transporter; InterPro: IPR005828 Recent genome-sequencing data and a wealth of biochemical and molecular genetic investigations have revealed the occurrence of dozens of families of primary and secondary transporters

Probab=100.00  E-value=3.5e-38  Score=316.00  Aligned_cols=380  Identities=27%  Similarity=0.414  Sum_probs=279.2

Q ss_pred             ccchhhHHHHHHHHHHhhhhhhhccccCCCCchHHHHHHHHHHHHHHHHHhccc---cHHHHHHHHHHhhccchhhHhhh
Q 039541          117 ILSGLPSSCFFIGCLLGGLALSTLGDSSSLGRKKLLFLSCFAMSITALATIFAN---NIWIYSTIRFVAGFFRAPIMTSV  193 (521)
Q Consensus       117 ~~~~~~~s~~~lg~~i~~~~~g~l~dr~~~Grr~~l~~~~~~~~~~~~~~~~~~---~~~~l~~~r~l~G~~~g~~~~~~  193 (521)
                      ...+++.+...+|..+|++++|+++||  +|||++++++.++..+++++.++++   |++.+.++|+++|++.|+..+..
T Consensus        46 ~~~~~~~~~~~~g~~~G~~~~g~~~d~--~GRk~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~R~~~G~~~g~~~~~~  123 (451)
T PF00083_consen   46 LLSSLLTSSFFIGAIVGALIFGFLADR--YGRKPALIISALLMIIGSILIAFAPSYNNFWMLLIGRFLIGFGIGGAYVVS  123 (451)
T ss_pred             HHHHHHHHHHHhhhccccccccccccc--ccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            345899999999999999999999999  9999999999999999999999999   99999999999999999999999


Q ss_pred             hhheeeeecCcchhHHHHHHHHHHHHHHHHHHHHHHhhc----CCchhHHHHHHHHHHHHHHhhhceeeecchhHHHhcC
Q 039541          194 IVLLSEMVSKRWRGQVVIIGFTFFSFGLVSLPAVAYLSR----GSSWKMLYVWTSIPSIVCCIIIYPFISESPRWLFIHG  269 (521)
Q Consensus       194 ~~~i~~~~~~~~rg~~~~~~~~~~~~G~~i~~~i~~~~~----~~~wr~~f~~~~~~~~~~~~~~~~~~~esp~~~~~~~  269 (521)
                      ..++.|..|+++|++..++.+.++.+|.+++..++....    ..+||..+++.++++++.. +...++||||+|+..++
T Consensus       124 ~~~~~E~~~~~~R~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~Wr~~~~~~~~~~l~~~-~~~~~~pESP~wL~~~~  202 (451)
T PF00083_consen  124 PIYISEIAPPKHRGFLSSLFQLFWALGILLASLIGYIVSYYSDNWGWRILLIFGAIPSLLVL-LLRFFLPESPRWLLSKG  202 (451)
T ss_pred             cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-ccccccccccceecccc
Confidence            999999999999999999999999999999888865432    2469999999999998877 67789999999999999


Q ss_pred             CHHHHHHHHHHHhhhcCCCCCCCccccccCCCCCccccCCCcccccccHHHHhccHHHHHHHHHHHHHHHHH-----HHH
Q 039541          270 HEAEAMAVLKRLASRSNYQSDYGLESCCLSNMPPKAKNVIPKLDLYSSLKDLFNRKWALRRLLTIMALAFGI-----GVV  344 (521)
Q Consensus       270 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~-----~~~  344 (521)
                      |.+|+++.++++.+ .+..      +.+.++...+.++..+.   +.+++++++++..++............     ...
T Consensus       203 ~~~~A~~~l~~~~~-~~~~------~~~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~g~~~~  272 (451)
T PF00083_consen  203 RDEEAEKVLRKLRG-KEIE------DEEIEEIKAEKKESQES---KASWRDLFRNKKYRKRLLIALLLQFFQQFSGINFI  272 (451)
T ss_pred             cccccccccccccc-cccc------ccccccccccccccccc---ceeeeeccccccccccccccccccccccccccccc
Confidence            99999888777522 2111      11111111111111110   135677777765434444433333322     233


Q ss_pred             HHhHHhhccCCCccHH-HHHHHHHHHhHhHHHHHHHHHhhcCCchHHHHHHHHHHHHHHHHH--h-c-CCch---HHHHH
Q 039541          345 YFGLLLGVGNLSFNIY-LSLAFNGLLDIPAYLLTFILIERWSRKSSILTFCILSGTCSAICV--A-I-GDEQ---EVLQI  416 (521)
Q Consensus       345 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~i~~~~~~--~-~-~~~~---~~~~~  416 (521)
                      .+..+...+..+.+.. ......++..+++.+++.++.||+|||++++.+..+++++.+.+.  . . ....   .....
T Consensus       273 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GRr~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i  352 (451)
T PF00083_consen  273 FYYSPSIFENAGISNSFLATLILGLVNFLGTLLAIFLIDRFGRRKLLIIGLLLMAICSLILGIIFFLGVSSSSWWSILSI  352 (451)
T ss_pred             cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            3445656666555444 344555567778888889999999999999999888888877664  1 1 1111   12222


Q ss_pred             HHHHHHHHHHH-HHHHHHHHhhccccCchhhhhhhHHHHHhhhhhhhHHHHHHHhhc--cchhHHHHHHHHHHHHHh-Hh
Q 039541          417 GLELASFFSAC-VAFNVLLVFGTELFTTCVRNSTTSLVRQAVNLGAAFSPVLISAGR--QNEFLSFGVFGLVVFCFG-FF  492 (521)
Q Consensus       417 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~p~~~~~~~--~~~~~~~~~~~~~~~~~~-~~  492 (521)
                      +...+..+..+ +..+..+.+..|.+|++.|+++.++....+.++++++|.+.....  .+....+.++++++++.. +.
T Consensus       353 ~~~~l~~~~~~~g~~~~~~~~~~ElfPt~~R~~~~~~~~~~~~i~~~i~~~~~~~~~~~~~~~~~~~i~~~~~~i~~i~~  432 (451)
T PF00083_consen  353 VFLALFFAFFSLGWGPLPWIYTAELFPTKVRSTGIGLSYAVGRIGGFIIPFLFPYLFNNLGGWGVFLIFAGVCLIAIIFV  432 (451)
T ss_pred             eeeeeccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccchhhHHHHHHHHhhe
Confidence            33333333333 445677799999999999999999999999999999988876532  222455566665555554 44


Q ss_pred             hhccccCCCCCCCcchH
Q 039541          493 VVFLPETIGVTLCDTLD  509 (521)
Q Consensus       493 ~~~~~~~~~~~~~~~~~  509 (521)
                      ++++|||++++++|.++
T Consensus       433 ~~~lpET~g~~l~ei~~  449 (451)
T PF00083_consen  433 YFFLPETKGKTLEEIQE  449 (451)
T ss_pred             eEEEeeCCCCCHHHHHh
Confidence            67889999999877654

Two such families have been found to occur ubiquitously in all classifications of living organisms. These are the ATP-binding cassette (ABC) superfamily and the major facilitator superfamily (MFS), also called the uniporter-symporter-antiporter family. While ABC family permeases are in general multicomponent primary active transporters, capable of transporting both small molecules and macromolecules in response to ATP hydrolysis the MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients. Although well over 100 families of transporters have now been recognised and classified, the ABC superfamily and MFS account for nearly half of the solute transporters encoded within the genomes of microorganisms. They are also prevalent in higher organisms. The importance of these two families of transport systems to living organisms can therefore not be overestimated []. The MFS was originally believed to function primarily in the uptake of sugars but subsequent studies revealed that drug efflux systems, Krebs cycle metabolites, organophosphate:phosphate exchangers, oligosaccharide:H1 symport permeases, and bacterial aromatic acid permeases were all members of the MFS. These observations led to the probability that the MFS is far more widespread in nature and far more diverse in function than had been thought previously. 17 subgroups of the MFS have been identified []. Evidence suggests that the MFS permeases arose by a tandem intragenic duplication event in the early prokaryotes. This event generated a 2-transmembrane-spanner (TMS) protein topology from a primordial 6-TMS unit. Surprisingly, all currently recognised MFS permeases retain the two six-TMS units within a single polypeptide chain, although in 3 of the 17 MFS families, an additional two TMSs are found []. Moreover, the well-conserved MFS specific motif between TMS2 and TMS3 and the related but less well conserved motif between TMS8 and TMS9 [] prove to be a characteristic of virtually all of the more than 300 MFS proteins identified.; GO: 0022857 transmembrane transporter activity, 0055085 transmembrane transport, 0016021 integral to membrane

>PRK15402 multidrug efflux system translocase MdfA; Provisional

Probab=100.00  E-value=1.6e-30  Score=256.80  Aligned_cols=351  Identities=12%  Similarity=0.041  Sum_probs=261.6

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHhhhhccccCCcccccCCcccccCCccccccccCcceecCCCCcceeeecceeeCCcccc
Q 039541           39 LPQFIQVILISLLLIFESQQTFISVYTDEEPTWHCINNTTTCSSSSDICTLSKSAWAWDRPSDTTIISDWSLECAGSSIL  118 (521)
Q Consensus        39 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~p~~~c~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~  118 (521)
                      +..++..+.+.+..+...+....+.+.                                   +|.+.+++|.+.++.   
T Consensus         9 ~~~~~~~~~~~l~~~~~~~~~~~~~~~-----------------------------------~~~~~~~~~~s~~~~---   50 (406)
T PRK15402          9 RQALLFPLCLVLFEFATYIANDMIQPG-----------------------------------MLAVVEDFNAGAEWV---   50 (406)
T ss_pred             HHHHHHHHHHHHHHHHHHhhhhhHhcc-----------------------------------hHHHHHHhCCCHHHH---
Confidence            445666666677777777777777777                                   889999999998666   


Q ss_pred             chhhHHHHHHHHHHhhhhhhhccccCCCCchHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHhhccchhhHhhhhhhee
Q 039541          119 SGLPSSCFFIGCLLGGLALSTLGDSSSLGRKKLLFLSCFAMSITALATIFANNIWIYSTIRFVAGFFRAPIMTSVIVLLS  198 (521)
Q Consensus       119 ~~~~~s~~~lg~~i~~~~~g~l~dr~~~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~  198 (521)
                       ++..+.+.++..+++++.|+++||  +|||++++++.++.+++.++.+++++++.+++.|+++|++.+...+...+++.
T Consensus        51 -~~~~~~~~~~~~~~~~~~G~l~dr--~g~r~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~i~  127 (406)
T PRK15402         51 -PTSMTAYLAGGMFLQWLLGPLSDR--IGRRPVMLAGVAFFILTCLAILLAQSIEQFTLLRFLQGIGLCFIGAVGYAAIQ  127 (406)
T ss_pred             -HHHHHHHHHHHHHHHHHHHHHHHH--hCChHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhHhhhHHHHHHHHHH
Confidence             999999999999999999999999  99999999999999999999999999999999999999999988899999999


Q ss_pred             eeecCcchhHHHHHHHHHHHHHHHHHHHH-HHhhcCCchhHHHHHHHHHHHHHHhhhceeeecchhHHHhcCCHHHHHHH
Q 039541          199 EMVSKRWRGQVVIIGFTFFSFGLVSLPAV-AYLSRGSSWKMLYVWTSIPSIVCCIIIYPFISESPRWLFIHGHEAEAMAV  277 (521)
Q Consensus       199 ~~~~~~~rg~~~~~~~~~~~~G~~i~~~i-~~~~~~~~wr~~f~~~~~~~~~~~~~~~~~~~esp~~~~~~~~~~~~~~~  277 (521)
                      |++|+++|++++++......+|..++|.+ +.+.+..+||+.|++.++..++..+..++..||+++..   ++..+    
T Consensus       128 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~----  200 (406)
T PRK15402        128 ESFEEADAIKITALMANVALLAPLLGPLVGAALIHVLPWRGMFVLFAALAALSFFGLWRAMPETAGRV---GEKLS----  200 (406)
T ss_pred             HHhChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCccHHHHHHHHHHHHHHHHHHHhCCCCCccc---ccccc----
Confidence            99999999999999988888999999998 66667789999999988888777655555667764210   00000    


Q ss_pred             HHHHhhhcCCCCCCCccccccCCCCCccccCCCcccccccHHHHhccHHHHHHHHHHHHHHHHHHHHHHhHHhh-ccCCC
Q 039541          278 LKRLASRSNYQSDYGLESCCLSNMPPKAKNVIPKLDLYSSLKDLFNRKWALRRLLTIMALAFGIGVVYFGLLLG-VGNLS  356 (521)
Q Consensus       278 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~  356 (521)
                      .++                                 ...+++.++++|.++...+...+............|.+ .+..+
T Consensus       201 ~~~---------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~g  247 (406)
T PRK15402        201 LKE---------------------------------LGRDYKLVLKNRRFVAGALALGLVSLPLLAWIALSPVILISGEQ  247 (406)
T ss_pred             HHH---------------------------------HHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhC
Confidence            000                                 01256678888876655444433333222222223433 33445


Q ss_pred             ccHHHHH---HHHHHHhHhHHHHHHHHHhhcCCchHHHHHHHHHHHHHHHHHhcC---CchHHHHHHHHHHHHHHHHHHH
Q 039541          357 FNIYLSL---AFNGLLDIPAYLLTFILIERWSRKSSILTFCILSGTCSAICVAIG---DEQEVLQIGLELASFFSACVAF  430 (521)
Q Consensus       357 ~~~~~~~---~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~i~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~  430 (521)
                      .+.....   ....++.+++.++.+++.||+++|+.+.++..+..++...+....   ....++..+..++.+++.+...
T Consensus       248 ~~~~~~g~~~~~~~~~~~~g~~~~g~l~~r~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~g~~~~~  327 (406)
T PRK15402        248 LSSYEYGLLQVPVFGALIAGNLTLARLTSRRPLRSLIRMGLWPMVAGLLLAALATVISSHAYLWLTAGLSLYAFGIGLAN  327 (406)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHh
Confidence            5443322   334456778899999999999999998888877776666555432   2222445566677777777776


Q ss_pred             HHHHHhhccccCchhhhhhhHHHHHhhhhhhhHHHHHHHhh
Q 039541          431 NVLLVFGTELFTTCVRNSTTSLVRQAVNLGAAFSPVLISAG  471 (521)
Q Consensus       431 ~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~p~~~~~~  471 (521)
                      +......... +++.++++.++.+....+|..+++.+.+..
T Consensus       328 ~~~~~~~~~~-~~~~~g~~~~~~~~~~~~~~~~g~~~~~~l  367 (406)
T PRK15402        328 AGLYRLTLFS-SDVSKGTVSAAMGMLSMLIFTVGIELSKHA  367 (406)
T ss_pred             hhHHHHHhhh-ccccccHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            6655555444 347889999999999999999999999863

>TIGR00892 2A0113 monocarboxylate transporter 1

Probab=100.00  E-value=1.5e-31  Score=266.52  Aligned_cols=390  Identities=15%  Similarity=0.097  Sum_probs=265.9

Q ss_pred             ChhHHHHHHHHHHHHHHHHHHHhhhhccccCCcccccCCcccccCCccccccccCcceecCCCCcceeeecceeeCCccc
Q 039541           38 GLPQFIQVILISLLLIFESQQTFISVYTDEEPTWHCINNTTTCSSSSDICTLSKSAWAWDRPSDTTIISDWSLECAGSSI  117 (521)
Q Consensus        38 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~p~~~c~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~  117 (521)
                      +.|+|.++..+.+.......+...++..                                   +|.+.+++|++.++.  
T Consensus        14 ~~~~w~i~~~~~~~~~~~~~~~~~~~~~-----------------------------------~~~i~~~~g~s~~~~--   56 (455)
T TIGR00892        14 GGWGWVVLGATFVSIGFSYAFPKAVTVF-----------------------------------FKELQQIFQATYSET--   56 (455)
T ss_pred             CCcchHHHHHHHHHHHHHHhhhcchhhh-----------------------------------HHHHHHHhCcchhHH--
Confidence            4567777777777666555555556667                                   889999999999777  


Q ss_pred             cchhhHHHHHHHHHHhhhhhhhccccCCCCchHHHHHHHHHHHHHHHHHhccccHHHHHH-HHHHhhccchhhHhhhhhh
Q 039541          118 LSGLPSSCFFIGCLLGGLALSTLGDSSSLGRKKLLFLSCFAMSITALATIFANNIWIYST-IRFVAGFFRAPIMTSVIVL  196 (521)
Q Consensus       118 ~~~~~~s~~~lg~~i~~~~~g~l~dr~~~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~-~r~l~G~~~g~~~~~~~~~  196 (521)
                        +++.+.+.++..++.++.|+++||  +|||++++.+.++.++++++++++++++.+++ .|++.|++.+...+...++
T Consensus        57 --~~~~s~~~~~~~~~~~~~G~l~dr--~g~r~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~G~~~~~~~~~~~~~  132 (455)
T TIGR00892        57 --AWISSIMLAVLYAGGPISSILVNR--FGCRPVVIAGGLLASLGMILASFSSNVIELYLTAGFITGLGLAFNFQPSLTM  132 (455)
T ss_pred             --HHHHHHHHHHHHHhhHHHHHHHHH--cCchHHHHhhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcchhhhhHHHHH
Confidence              999999999999999999999999  99999999999999999999999999998875 5799999999877777788


Q ss_pred             eeeeecCcchhHHHHHHHHHHHHHHHHHHHH-HHhhcCCchhHHHHHHHHHHHHHHhhhceeeecchhHHHhcCCHHHHH
Q 039541          197 LSEMVSKRWRGQVVIIGFTFFSFGLVSLPAV-AYLSRGSSWKMLYVWTSIPSIVCCIIIYPFISESPRWLFIHGHEAEAM  275 (521)
Q Consensus       197 i~~~~~~~~rg~~~~~~~~~~~~G~~i~~~i-~~~~~~~~wr~~f~~~~~~~~~~~~~~~~~~~esp~~~~~~~~~~~~~  275 (521)
                      +.++++ ++|+++.++.+.+..+|..++|.+ +.+.+.+|||+.|++.+++.++..+..++..++.+...  +.+.++  
T Consensus       133 ~~~~~~-~~r~~a~g~~~~~~~~g~~~~~~l~~~l~~~~gwr~~f~~~~~~~~~~~v~~~~~~~~~~~~~--~~~~~~--  207 (455)
T TIGR00892       133 LGKYFY-RRRPLANGLAMAGSPVFLSTLAPLNQYLFESFGWRGSFLILGGLLLHCCVCGALMRPVGPSQR--VSKSKS--  207 (455)
T ss_pred             HHHHHH-hhHHHHHHHHHhcccHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHhCCCCcccc--cccccc--
Confidence            889986 789999999999999999999888 67778889999999999887766534333333322100  000000  


Q ss_pred             HHHHHHhhhcCCCCCCCccccccCCCCCccccCCCcccccccHHHHhccHHHHHHHHHHHHHHHHHHHHHHhHHhhccCC
Q 039541          276 AVLKRLASRSNYQSDYGLESCCLSNMPPKAKNVIPKLDLYSSLKDLFNRKWALRRLLTIMALAFGIGVVYFGLLLGVGNL  355 (521)
Q Consensus       276 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  355 (521)
                             . ....++...     ++  .+.+...++.....+ .+++++|.++......++..++.......++.+.++.
T Consensus       208 -------~-~~~~~~~~~-----~~--~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~  271 (455)
T TIGR00892       208 -------K-EGLPPDGST-----KK--LSKKSTAEKINRFLD-FSLFTHRGFLVYLSGNVIMFLGFFAPIIFLVPYAKDK  271 (455)
T ss_pred             -------c-ccCCCCCcc-----cc--ccccchhhhhhhhcc-hHHhcCchHHHHHHHHHHHHHHccchHHHHHHHHHHc
Confidence                   0 000000000     00  000000000000011 2477888776555544444444433333444445556


Q ss_pred             CccHHHH---HHHHHHHhHhHHHHHHHHHhhc--CCchHHHHH--HHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHH
Q 039541          356 SFNIYLS---LAFNGLLDIPAYLLTFILIERW--SRKSSILTF--CILSGTCSAICVAIGDEQEVLQIGLELASFFSACV  428 (521)
Q Consensus       356 ~~~~~~~---~~~~~~~~~~~~~~~g~l~dr~--g~~~~~~~~--~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  428 (521)
                      +.+....   ..+.+++.++++++.+++.||.  ++|+...++  ..+.+++.+......+  .+..++..++.+++.+.
T Consensus       272 g~s~~~~g~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~--~~~~~i~~~~~G~~~g~  349 (455)
T TIGR00892       272 GVDEYEAAFLLSIIGFVDIFARPSCGLIAGLKWIRPHVQYLFSFALLFNGLTHLLCALAGD--YTGLVIYCIFFGLSFGS  349 (455)
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCHHHHHHHHHHHHHHHHHHHHHHHhch--HHHHHHHHHHHHHHhch
Confidence            6554333   3445567778888899999974  333333332  2323333333333222  24556677778888888


Q ss_pred             HHHHHHHhhccccCchhhhhhhHHHHHhhhhhhhHHHHHHHhhc--c-chhHHHHHHHHHHHHHhH
Q 039541          429 AFNVLLVFGTELFTTCVRNSTTSLVRQAVNLGAAFSPVLISAGR--Q-NEFLSFGVFGLVVFCFGF  491 (521)
Q Consensus       429 ~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~p~~~~~~~--~-~~~~~~~~~~~~~~~~~~  491 (521)
                      ..+....++.|.+|++.++++.|+.+....+|.+++|.+.|...  . ++...|.+.+++.+++.+
T Consensus       350 ~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~igp~i~G~l~~~~g~~~~~f~~~~~~~li~~~  415 (455)
T TIGR00892       350 VGALLFEVLMDLVGAQRFSSAVGLVTIVECCAVLIGPPLAGRLVDATKNYKYIFYASGSIVVSAGL  415 (455)
T ss_pred             HHHHHHHHHHHHhhHHHHhhHHhHHHHHHHHHHHccccceeeeehhcCCcchHHHHhhHHHHHHHH
Confidence            88888999999999999999999999999999999999998632  2 355667766666555544

>TIGR00711 efflux_EmrB drug resistance transporter, EmrB/QacA subfamily

Probab=100.00  E-value=7.5e-31  Score=265.77  Aligned_cols=382  Identities=13%  Similarity=0.096  Sum_probs=281.2

Q ss_pred             HHHHHHHHHHHHHHHHHhhhhccccCCcccccCCcccccCCccccccccCcceecCCCCcceeeecceeeCCccccchhh
Q 039541           43 IQVILISLLLIFESQQTFISVYTDEEPTWHCINNTTTCSSSSDICTLSKSAWAWDRPSDTTIISDWSLECAGSSILSGLP  122 (521)
Q Consensus        43 ~~~~~~~l~~~~~~~~~~~~~~~~~~p~~~c~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~  122 (521)
                      +++..++++.++..++.......                                   .|.+.+++|.+.++.    +++
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~-----------------------------------~p~~~~~~g~s~~~~----~~~   42 (485)
T TIGR00711         2 LLTIVLMLGTFMAVLDSTIVNVA-----------------------------------IPTIAGDLGSSLSQV----QWV   42 (485)
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHH-----------------------------------HHHHHHhcCCChhhh----hHH
Confidence            34566778888899999888888                                   999999999999777    999


Q ss_pred             HHHHHHHHHHhhhhhhhccccCCCCchHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHhhccchhhHhhhhhheeeeec
Q 039541          123 SSCFFIGCLLGGLALSTLGDSSSLGRKKLLFLSCFAMSITALATIFANNIWIYSTIRFVAGFFRAPIMTSVIVLLSEMVS  202 (521)
Q Consensus       123 ~s~~~lg~~i~~~~~g~l~dr~~~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~  202 (521)
                      .+.+.++..++.++.|+++||  +|||++++++.++.+++.+++++++|++.++++|+++|++.+...+...+++.|++|
T Consensus        43 ~~~~~~~~~~~~~~~g~l~dr--~g~r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~G~~~~~~~~~~~~~i~~~~~  120 (485)
T TIGR00711        43 ITSYMLANAISIPLTGWLAKR--FGTRRLFLISTFAFTLGSLLCGVAPNLELMIIFRVIQGFGGGPLIPLSFSTLLNIYP  120 (485)
T ss_pred             HHHHHHHHHHHHHhHHHHHHH--hCcHHHHHHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHhhhhhHHHHHHHHHHHHCC
Confidence            999999999999999999999  999999999999999999999999999999999999999999999999999999999


Q ss_pred             CcchhHHHHHHHHHHHHHHHHHHHH-HHhhcCCchhHHHHHHHHHHHHHHhhhceeeecchhHHHhcCCHHHHHHHH---
Q 039541          203 KRWRGQVVIIGFTFFSFGLVSLPAV-AYLSRGSSWKMLYVWTSIPSIVCCIIIYPFISESPRWLFIHGHEAEAMAVL---  278 (521)
Q Consensus       203 ~~~rg~~~~~~~~~~~~G~~i~~~i-~~~~~~~~wr~~f~~~~~~~~~~~~~~~~~~~esp~~~~~~~~~~~~~~~~---  278 (521)
                      +++|+++++++..+..+|..++|.+ +++.++.+||+.|++.+++.++..++.++.+||+++.  .+++.+......   
T Consensus       121 ~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~w~~~f~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~d~~g~~l~~~  198 (485)
T TIGR00711       121 PEKRGRAMAIWGLTVLVAPALGPTLGGWIIENYHWRWIFLINVPIGIIVVVVAFFILPRDKPA--ASENFDFLGLLLLSV  198 (485)
T ss_pred             HHHHHHHHHHHHHHHHHHhhhhhccHhHhccCcCceehhhhhhHHHHHHHHHHHHHcCCcccc--ccCCCcHHHHHHHHH
Confidence            9999999999999999999999998 6777889999999998888777775666667765431  111111111000   


Q ss_pred             ----HHHhhhcCCCCCCCccccccCCCC---------CccccCCCcccccccHHHHhccHHHHHHHHHHHHHHHHHHHHH
Q 039541          279 ----KRLASRSNYQSDYGLESCCLSNMP---------PKAKNVIPKLDLYSSLKDLFNRKWALRRLLTIMALAFGIGVVY  345 (521)
Q Consensus       279 ----~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~  345 (521)
                          ..... ..+.........+.....         ....+.. .++. ....++++++.++...+..+...+......
T Consensus       199 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  275 (485)
T TIGR00711       199 GLGSLLYGL-SEGPERGWFDSNEILILSITGLVAIIAFVVWELT-DDNP-LVDLRLFKYRNFTIGCVYMSLLGLGLYGSF  275 (485)
T ss_pred             HHHHHHHHH-hhCCCCCCCCchHHHHHHHHHHHHHHHHHHHHHc-CCCC-ccCHHHHcCCChHHHHHHHHHHHHHHHHHH
Confidence                00000 001100000000000000         0000000 0000 112357788877766666666555555555


Q ss_pred             HhHHhhccC-CCccHHHH---HHHHHHHhHhHHHHHHHHHhhcCCchHHHHHHHHHHHHHHHHHh-c-CCchHHHHHHHH
Q 039541          346 FGLLLGVGN-LSFNIYLS---LAFNGLLDIPAYLLTFILIERWSRKSSILTFCILSGTCSAICVA-I-GDEQEVLQIGLE  419 (521)
Q Consensus       346 ~~~~~~~~~-~~~~~~~~---~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~i~~~~~~~-~-~~~~~~~~~~~~  419 (521)
                      +..|.++++ .+.++...   .....++.+++.++.|++.||++||+.+.++..+.+++...+.+ . +..+.+......
T Consensus       276 ~~~p~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~  355 (485)
T TIGR00711       276 YLLPLYLQQVLGYTALQAGLHILPVGLAPMLSSPIAGRMGDKIDPRKLVTIGLILYAVGFYWRAFTFTPDTPFLAIALPQ  355 (485)
T ss_pred             HHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcHHHHHHHHHHHHHHHHHHhccCCCCCCHHHHHHHH
Confidence            556666544 45554333   34456778889999999999999999999888888887776652 2 222224455567


Q ss_pred             HHHHHHHHHHHHHHHHhhccccCchhhhhhhHHHHHhhhhhhhHHHHHHHh
Q 039541          420 LASFFSACVAFNVLLVFGTELFTTCVRNSTTSLVRQAVNLGAAFSPVLISA  470 (521)
Q Consensus       420 ~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~p~~~~~  470 (521)
                      ++.+++.+..++.......+..|++.++++.|+.+....+|+.+++.+.+.
T Consensus       356 ~l~g~g~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~ig~~i~g~  406 (485)
T TIGR00711       356 FIRGFGMGCFFMPLTTIALSGLPPHKIARGSSLSNFTRQLGGSIGTALITT  406 (485)
T ss_pred             HHHHHHHHHHHHHHHHHHHhcCCHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence            778888888877777778888999999999999999999999999998875

This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli.

>TIGR00710 efflux_Bcr_CflA drug resistance transporter, Bcr/CflA subfamily

Probab=100.00  E-value=2.7e-30  Score=253.71  Aligned_cols=339  Identities=17%  Similarity=0.199  Sum_probs=250.4

Q ss_pred             CcceeeecceeeCCccccchhhHHHHHHHHHHhhhhhhhccccCCCCchHHHHHHHHHHHHHHHHHhccccHHHHHHHHH
Q 039541          101 DTTIISDWSLECAGSSILSGLPSSCFFIGCLLGGLALSTLGDSSSLGRKKLLFLSCFAMSITALATIFANNIWIYSTIRF  180 (521)
Q Consensus       101 ~~~i~~~~~~~~~~~~~~~~~~~s~~~lg~~i~~~~~g~l~dr~~~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~  180 (521)
                      .|.+.+++|.++++.    +++.+.+.++..+++++.|+++||  +|||+++..+.++.+++.++.+++++++.+++.|+
T Consensus        28 ~p~~~~~~g~s~~~~----g~~~~~~~~~~~~~~~~~g~l~d~--~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  101 (385)
T TIGR00710        28 FPEIAADLSTPASIV----QMTLTLYLLGFAAGQLLWGPLSDR--YGRRPVLLLGLFIFALSSLGLALSNNIETLLVLRF  101 (385)
T ss_pred             HHHHHHHhCCCHHHH----HHHHHHHHHHHHHHHHhhhhHHHh--cCChHHHHHHHHHHHHHHHHHHHHccHHHHHHHHH
Confidence            889999999999776    999999999999999999999999  99999999999999999999999999999999999


Q ss_pred             HhhccchhhHhhhhhheeeeecCcchhHHHHHHHHHHHHHHHHHHHH-HHhhcCCchhHHHHHHHHHHHHHHhhhceeee
Q 039541          181 VAGFFRAPIMTSVIVLLSEMVSKRWRGQVVIIGFTFFSFGLVSLPAV-AYLSRGSSWKMLYVWTSIPSIVCCIIIYPFIS  259 (521)
Q Consensus       181 l~G~~~g~~~~~~~~~i~~~~~~~~rg~~~~~~~~~~~~G~~i~~~i-~~~~~~~~wr~~f~~~~~~~~~~~~~~~~~~~  259 (521)
                      +.|++.+...+...+++.|++|+++|++++++.+....+|..+++.+ +.+.+..+||+.|++.++..++..++.++..|
T Consensus       102 l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  181 (385)
T TIGR00710       102 VQAFGASAGSVISQALVRDIYPGEELSRIYSILMPVLALAPAVAPLLGGYILVWLSWHAIFAFLSLAGILLSALIFFILP  181 (385)
T ss_pred             HHHcchhHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHhCC
Confidence            99999999999999999999999999999999999999999999988 66777789999999988887777656666667


Q ss_pred             cchhHHHhcCCHHHHHHHHHHHhhhcCCCCCCCccccccCCCCCccccCCCcccccccHHHHhccHHHHHHHHHHHHHHH
Q 039541          260 ESPRWLFIHGHEAEAMAVLKRLASRSNYQSDYGLESCCLSNMPPKAKNVIPKLDLYSSLKDLFNRKWALRRLLTIMALAF  339 (521)
Q Consensus       260 esp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~  339 (521)
                      |+++..   .+ ++.                                     .+....++++++++.++...+.......
T Consensus       182 ~~~~~~---~~-~~~-------------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~  220 (385)
T TIGR00710       182 ETLPYE---AR-IQI-------------------------------------STYFETFLLLLKSKMFWGYALIYGASFG  220 (385)
T ss_pred             CCCCCc---cc-CCH-------------------------------------HHHHHHHHHHHcCchhHHHHHHHHHHHH
Confidence            654210   00 000                                     0001245667788876655544444333


Q ss_pred             HHHHHHHhHHhhcc-CCCccHHH---HHHHHHHHhHhHHHHHHHHHhhcCCchHHHHHHHHHHHHHHHHHhcC--C-chH
Q 039541          340 GIGVVYFGLLLGVG-NLSFNIYL---SLAFNGLLDIPAYLLTFILIERWSRKSSILTFCILSGTCSAICVAIG--D-EQE  412 (521)
Q Consensus       340 ~~~~~~~~~~~~~~-~~~~~~~~---~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~i~~~~~~~~~--~-~~~  412 (521)
                      .........|.+.. +.+.+...   ......++.+++.++.+++.||+++|+.+..+..+..++.+++....  . ...
T Consensus       221 ~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  300 (385)
T TIGR00710       221 GFFAFFSGAPFVYIDIMGVSPSVFGLLFALNIIAMIFGGFLNGRFIKKWGAKSLLRMGLILFAVSAVLLEITAILGLGSW  300 (385)
T ss_pred             HHHHHHHcChHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHhccchH
Confidence            33333333344433 45554433   33445677888999999999999999988888777766655554432  1 111


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhccccCchhhhhhhHHHHHhhhhhhhHHHHHHHhhccchhHHHHHHHHHHH
Q 039541          413 VLQIGLELASFFSACVAFNVLLVFGTELFTTCVRNSTTSLVRQAVNLGAAFSPVLISAGRQNEFLSFGVFGLVVF  487 (521)
Q Consensus       413 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~p~~~~~~~~~~~~~~~~~~~~~~  487 (521)
                      .......++.+++.+...+.......|..| +.++++.++.+.....++.+.+.+.+....+....+...+....
T Consensus       301 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~  374 (385)
T TIGR00710       301 AMIIGPMMFVGIGNSMISSIAMAYALEDFP-HVAGTASALFGTLRLVLGAIVGYLVSLIHGNTAWPMSLSCLVLA  374 (385)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhccCc-ccchHHHHHHHHHHHHHHHHHHHHHHhccccChHHHHHHHHHHH
Confidence            333445666777788888888888888887 46799999998887665554444455433333444444443333

This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 12 membrane-spanning regions. Members with known activity include Bcr (bicyclomycin resistance protein) in E. coli, Flor (chloramphenicol and florfenicol resistance) in Salmonella typhimurium DT104, and CmlA (chloramphenicol resistance) in Pseudomonas sp. plasmid R1033.

>PRK10091 MFS transport protein AraJ; Provisional

Probab=100.00  E-value=4.3e-30  Score=251.17  Aligned_cols=338  Identities=12%  Similarity=0.064  Sum_probs=242.8

Q ss_pred             CcceeeecceeeCCccccchhhHHHHHHHHHHhhhhhhhccccCCCCchHHHHHHHHHHHHHHHHHhccccHHHHHHHHH
Q 039541          101 DTTIISDWSLECAGSSILSGLPSSCFFIGCLLGGLALSTLGDSSSLGRKKLLFLSCFAMSITALATIFANNIWIYSTIRF  180 (521)
Q Consensus       101 ~~~i~~~~~~~~~~~~~~~~~~~s~~~lg~~i~~~~~g~l~dr~~~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~  180 (521)
                      +|.+++|+|.+.++.    |++.+.+.++..++++++|+++||  +|||+++.++.++.+++.+++++++|++.+++.|+
T Consensus        26 l~~~~~~~g~s~~~~----g~~~s~~~~~~~~~~~~~g~l~dr--~g~r~~~~~~~~~~~~~~~l~~~~~~~~~l~~~r~   99 (382)
T PRK10091         26 LTELAHDVGISIPAA----GHMISYYALGVVVGAPIIALFSSR--YSLKHILLFLVALCVIGNAMFTLSSSYLMLAIGRL   99 (382)
T ss_pred             hHHHHHHcCCCHHHH----hHHHHHHHHHHHHHHHHHHHHHcc--CccHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHH
Confidence            899999999999777    999999999999999999999999  99999999999999999999999999999999999


Q ss_pred             HhhccchhhHhhhhhheeeeecCcchhHHHHHHHHHHHHHHHHHHHH-HHhhcCCchhHHHHHHHHHHHHHHhhhceeee
Q 039541          181 VAGFFRAPIMTSVIVLLSEMVSKRWRGQVVIIGFTFFSFGLVSLPAV-AYLSRGSSWKMLYVWTSIPSIVCCIIIYPFIS  259 (521)
Q Consensus       181 l~G~~~g~~~~~~~~~i~~~~~~~~rg~~~~~~~~~~~~G~~i~~~i-~~~~~~~~wr~~f~~~~~~~~~~~~~~~~~~~  259 (521)
                      ++|++.+...+....++.|++|+++|++++++...+..+|..++|.+ +.+.+..+||+.|++.+++.++..+..++.+|
T Consensus       100 l~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~gwr~~f~~~~~~~~~~~~~~~~~lp  179 (382)
T PRK10091        100 VSGFPHGAFFGVGAIVLSKIIKPGKVTAAVAGMVSGMTVANLLGIPLGTYLSQEFSWRYTFLLIAVFNIAVLASIYFWVP  179 (382)
T ss_pred             HHHhhhHHHHHHHHHHHHHhCChHHhhHHHHHHHHHHHHHHHHhccHHHHHhhhccHHHHHHHHHHHHHHHHHHHHHhCC
Confidence            99999999888888999999999999999999999999999999888 56667789999999998887776655556677


Q ss_pred             cchhHHHhcCCHHHHHHHHHHHhhhcCCCCCCCccccccCCCCCccccCCCcccccccHHHHhccHHHHHHHHHHHHHHH
Q 039541          260 ESPRWLFIHGHEAEAMAVLKRLASRSNYQSDYGLESCCLSNMPPKAKNVIPKLDLYSSLKDLFNRKWALRRLLTIMALAF  339 (521)
Q Consensus       260 esp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~  339 (521)
                      |.++.    .+. +.                                         ....+.++++..+...........
T Consensus       180 ~~~~~----~~~-~~-----------------------------------------~~~~~~~~~~~~~~~~~~~~~~~~  213 (382)
T PRK10091        180 DIRDE----AKG-GL-----------------------------------------REQFHFLRSPAPWLIFAATMFGNA  213 (382)
T ss_pred             CCCcc----ccc-CH-----------------------------------------HHHHHHhcChHHHHHHHHHHHHHH
Confidence            75310    000 00                                         011234455554433332222222


Q ss_pred             HH-HHHHHhHHhhccCCCccHHHH---HHHHHHHhHhHHHHHHHHHhhcCCchHHHHHHHHHHHHHHHHHhcCCchHHHH
Q 039541          340 GI-GVVYFGLLLGVGNLSFNIYLS---LAFNGLLDIPAYLLTFILIERWSRKSSILTFCILSGTCSAICVAIGDEQEVLQ  415 (521)
Q Consensus       340 ~~-~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~  415 (521)
                      .. ....|..+++.+..+.+....   ....+++.+++.++.+++.||+++|+.+..+..+.+++.+++....+.. +..
T Consensus       214 ~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~~r~~~~~~~~~~~~~~~i~~~~~~~~~~~~-~~~  292 (382)
T PRK10091        214 GVFAWFSYIKPYMMFISGFSETSMTFIMMLVGLGMVLGNLLSGRLSGRYSPLRIAAVTDFIIVLALLMLFFFGGMK-TAS  292 (382)
T ss_pred             HHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHhHHHheeccccCchhHHHHHHHHHHHHHHHHHHHHhhH-HHH
Confidence            22 222334455544456554333   3456677889999999999999999998888887777765554433222 233


Q ss_pred             HHHHHHHHHHHHHHHH-HHHHhhccccCchhhhhhhHHHHHhhhhhhhHHHHHHHh--h-ccchhHHHHHHHHHHHHHhH
Q 039541          416 IGLELASFFSACVAFN-VLLVFGTELFTTCVRNSTTSLVRQAVNLGAAFSPVLISA--G-RQNEFLSFGVFGLVVFCFGF  491 (521)
Q Consensus       416 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~p~~~~~--~-~~~~~~~~~~~~~~~~~~~~  491 (521)
                      .+..++.+++.....+ .......+..+++.++.+.  .+....+|..++|.+.|+  . ..++...+.+.+++.++...
T Consensus       293 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~g~~~Gp~~~G~l~~~~~~~~~~~~~~~~~~~~~~~  370 (382)
T PRK10091        293 LIFAFICCAGLFALSAPLQILLLQNAKGGELLGAAG--GQIAFNLGSAIGAYCGGMMLTLGLAYNYVALPAALLSFAAMS  370 (382)
T ss_pred             HHHHHHHHHHHHhhhHHHHHHHHHhCCcchHHHHHH--HHHHHHHHHHHHHHHhHHHHHcccCcchHHHHHHHHHHHHHH
Confidence            3344444444443333 3333444555555555543  456778999999999986  2 23566777766666655554


Q ss_pred             hh
Q 039541          492 FV  493 (521)
Q Consensus       492 ~~  493 (521)
                      ..
T Consensus       371 ~~  372 (382)
T PRK10091        371 SL  372 (382)
T ss_pred             HH
Confidence            43

>PRK10489 enterobactin exporter EntS; Provisional

Probab=99.98  E-value=1.3e-30  Score=258.24  Aligned_cols=360  Identities=13%  Similarity=0.000  Sum_probs=260.7

Q ss_pred             CcceeeecceeeCCccccchhhHHHHHHHHHHhhhhhhhccccCCCCchHHHHHHHHHHHHHHHHHhc-----cccHHHH
Q 039541          101 DTTIISDWSLECAGSSILSGLPSSCFFIGCLLGGLALSTLGDSSSLGRKKLLFLSCFAMSITALATIF-----ANNIWIY  175 (521)
Q Consensus       101 ~~~i~~~~~~~~~~~~~~~~~~~s~~~lg~~i~~~~~g~l~dr~~~Grr~~l~~~~~~~~~~~~~~~~-----~~~~~~l  175 (521)
                      +|.+.++++.+..+.    |++.+.+.++..+++++.|+++||  +|||+++..+.++.+++.+..+.     .++++.+
T Consensus        40 ~~~~~~~~~~s~~~~----g~~~~~~~l~~~~~~~~~G~l~dr--~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l  113 (417)
T PRK10489         40 VPVQIQMMTGSTLQV----GLSVTLTGGAMFIGLMVGGVLADR--YDRKKLILLARGTCGLGFIGLALNAFLPEPSLLAI  113 (417)
T ss_pred             HHHHHHHHHCCHHHH----HHHHHHHHHHHHHHHHhhHHHhhh--cCCceEEEehHHHHHHHHHHHHHHHHcCCCcHHHH
Confidence            567777888777555    999999999999999999999999  99999999988887777665442     5788999


Q ss_pred             HHHHHHhhccchhhHhhhhhheeeeecCcchhHHHHHHHHHHHHHHHHHHHH-HHhhcCCchhHHHHHHHHHHHHHHhhh
Q 039541          176 STIRFVAGFFRAPIMTSVIVLLSEMVSKRWRGQVVIIGFTFFSFGLVSLPAV-AYLSRGSSWKMLYVWTSIPSIVCCIII  254 (521)
Q Consensus       176 ~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~rg~~~~~~~~~~~~G~~i~~~i-~~~~~~~~wr~~f~~~~~~~~~~~~~~  254 (521)
                      ++.|+++|++.+...+...+++.|+.|+++|+++.++......+|..+||.+ +.+.+..+|++.|++.++..++.. +.
T Consensus       114 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~g~l~~~~~~~~~~~~~~~~~~~~~-~~  192 (417)
T PRK10489        114 YLLGLWDGFFGSLGVTALLAATPALVGRENLMQAGAITMLTVRLGSVISPALGGLLIAAGGVAWNYGLAAAGTFITL-LP  192 (417)
T ss_pred             HHHHHHHHHHHHHHHHHHhhhhhhccCHHHHHHHHHHHHHHHhHHHHhHHHHHHHHHHHHhhHHHHHHHHHHHHHHH-HH
Confidence            9999999999998889999999999999999999999999999999999998 566666799999998887776665 45


Q ss_pred             ceeeecchhHHHhcCCHHHHHHHHHHHhhhcCCCCCCCccccccCCCCCccccCCCcccccccHHHHhccHHHHHHHHHH
Q 039541          255 YPFISESPRWLFIHGHEAEAMAVLKRLASRSNYQSDYGLESCCLSNMPPKAKNVIPKLDLYSSLKDLFNRKWALRRLLTI  334 (521)
Q Consensus       255 ~~~~~esp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~  334 (521)
                      .+.+|++++..  +++ ++.                                    ..+..+.++.++++|.++...+..
T Consensus       193 ~~~l~~~~~~~--~~~-~~~------------------------------------~~~~~~~~~~~~~~~~~~~~~~~~  233 (417)
T PRK10489        193 LLRLPALPPPP--QPR-EHP------------------------------------LRSLLAGFRFLLASPVVGGIALLG  233 (417)
T ss_pred             HHhCCCCCCCC--ccc-ccc------------------------------------hHHHHHHHHHHHcChHHHHHHHHH
Confidence            55667654210  000 000                                    000012455677887765544443


Q ss_pred             HHHHHHHHHHHHhHHhhccC-CCccHHHH---HHHHHHHhHhHHHHHHHHHhhcCCchHHHHHHHHHHHHHHHHHhcCCc
Q 039541          335 MALAFGIGVVYFGLLLGVGN-LSFNIYLS---LAFNGLLDIPAYLLTFILIERWSRKSSILTFCILSGTCSAICVAIGDE  410 (521)
Q Consensus       335 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~---~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~i~~~~~~~~~~~  410 (521)
                      ...... .......|.+.++ .+.+....   ....+++.+++.++.+++.||.++++.+..+..+.+++.+++...++.
T Consensus       234 ~~~~~~-~~~~~~~p~~~~~~~g~~~~~~g~~~~~~~~g~~ig~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~  312 (417)
T PRK10489        234 GLLTMA-SAVRVLYPALADEVWQMGAAQIGLLYAAVPLGAALGALTSGWLAHSARPGLLMLLSTLGSFLAVGLFGLMPMW  312 (417)
T ss_pred             HHHHHH-HhHHHhhHHHHHhccCCChhHhHHHHHHHHHHHHHHHHHHHHhhhccCcchHHHHHHHHHHHHHHHHHccchH
Confidence            332222 2222234555554 55554333   344557788899999999999877778887777777776665543322


Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHhhccccCchhhhhhhHHHHHhhhhhhhHHHHHHHhhc--cchhHHHHHHHHHHHH
Q 039541          411 QEVLQIGLELASFFSACVAFNVLLVFGTELFTTCVRNSTTSLVRQAVNLGAAFSPVLISAGR--QNEFLSFGVFGLVVFC  488 (521)
Q Consensus       411 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~p~~~~~~~--~~~~~~~~~~~~~~~~  488 (521)
                        +...+..++.+++.+...+...++..|..|++.||+++|+.+....+|..++|.+.|...  .+....+.+.+++.++
T Consensus       313 --~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~g~~l~G~l~~~~g~~~~~~~~~~~~~~  390 (417)
T PRK10489        313 --ILAVLCLALFGYLSAISSLLQYTLLQTQTPDEMLGRINGLWTAQNVTGDAIGAALLGGLGAMMTPVASASASGFGLLI  390 (417)
T ss_pred             --HHHHHHHHHHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHhhhHhHHHHHHHHHHHHhchhhHHHHHHHHHHH
Confidence              345556667777777767778889999999999999999999999999999999998732  3455556555554444


Q ss_pred             -HhHhhhccccCCCCCCCcchH
Q 039541          489 -FGFFVVFLPETIGVTLCDTLD  509 (521)
Q Consensus       489 -~~~~~~~~~~~~~~~~~~~~~  509 (521)
                       +.+....+++.|+++.+|..+
T Consensus       391 ~~~~~~~~~~~~~~~~~~~~~~  412 (417)
T PRK10489        391 IGVLLLLVLGELRRFRQTPPEV  412 (417)
T ss_pred             HHHHHHHhcccccccccccccC
Confidence             444556678877776655543

>PRK12382 putative transporter; Provisional

Probab=99.98  E-value=1e-29  Score=249.92  Aligned_cols=336  Identities=13%  Similarity=0.054  Sum_probs=239.7

Q ss_pred             Ccc-eeeecceeeCCccccchhhHHHHHHHHHHhhhhhhhccccCCCCchHHHHHHHHHHHHHHHHH---hc-----ccc
Q 039541          101 DTT-IISDWSLECAGSSILSGLPSSCFFIGCLLGGLALSTLGDSSSLGRKKLLFLSCFAMSITALAT---IF-----ANN  171 (521)
Q Consensus       101 ~~~-i~~~~~~~~~~~~~~~~~~~s~~~lg~~i~~~~~g~l~dr~~~Grr~~l~~~~~~~~~~~~~~---~~-----~~~  171 (521)
                      +|. +.+++|++.++.    |++.+++.++..++++++|+++||  +|||++++.+.+...++.+..   ++     .++
T Consensus        38 l~~~l~~~lg~s~~~~----g~~~s~~~~~~~i~~~~~G~l~Dr--~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  111 (392)
T PRK12382         38 IPLFVHHDLGFGNTMV----GIAVGIQFLATVLTRGYAGRLADQ--YGAKRSALQGMLACGLAGLAYLLAAILPVSAPFK  111 (392)
T ss_pred             hhHHHHHhcCCcHHHH----HHHHHHHHHHHHHHhhhhhHHHHh--hcchHHHHHHHHHHHHHHHHHHhhhccccchhHH
Confidence            554 678999999666    999999999999999999999999  999999999988877665432   22     358


Q ss_pred             HHHHHHHHHHhhccchhhHhhhhhheeeeecCcchhHHHHHHHHHHHHHHHHHHHH-HHhhcCCchhHHHHHHHHHHHHH
Q 039541          172 IWIYSTIRFVAGFFRAPIMTSVIVLLSEMVSKRWRGQVVIIGFTFFSFGLVSLPAV-AYLSRGSSWKMLYVWTSIPSIVC  250 (521)
Q Consensus       172 ~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~rg~~~~~~~~~~~~G~~i~~~i-~~~~~~~~wr~~f~~~~~~~~~~  250 (521)
                      ++.++++|+++|++.+...+...+++.|++|+++|++++++.+.+...|.+++|.+ +.+.+..|||+.+.+..+..++.
T Consensus       112 ~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~r~~a~~~~~~~~~~g~~~g~~~~~~l~~~~g~~~~~~~~~~~~~~~  191 (392)
T PRK12382        112 FALLVVGRLILGFGESQLLTGALTWGLGLVGPKHSGKVMSWNGMAMYGALAAGAPLGLLLHSHFGFAALALTTMVLPLLA  191 (392)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCccccchhhhHHHHHHHHHHHHHHHHHHHHHhccChHHHHHHHHHHHHHH
Confidence            89999999999999999999999999999999999999999999999999999999 56667789999877665554433


Q ss_pred             HhhhceeeecchhHHHhcCCHHHHHHHHHHHhhhcCCCCCCCccccccCCCCCccccCCCcccccccHHHHhccHHHHHH
Q 039541          251 CIIIYPFISESPRWLFIHGHEAEAMAVLKRLASRSNYQSDYGLESCCLSNMPPKAKNVIPKLDLYSSLKDLFNRKWALRR  330 (521)
Q Consensus       251 ~~~~~~~~~esp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~  330 (521)
                      . ......||.+.      + ++                                  ++      .+.++.++.  .+..
T Consensus       192 ~-~~~~~~~~~~~------~-~~----------------------------------~~------~~~~~~~~~--~~~~  221 (392)
T PRK12382        192 W-AFNGTVRKVPA------H-AG----------------------------------ER------PSLWSVVGL--IWKP  221 (392)
T ss_pred             H-HHHHhccCCCC------C-cc----------------------------------cC------chHHHHHHH--HHHh
Confidence            3 22222222210      0 00                                  00      011222211  1111


Q ss_pred             HHHHHHHHHHHHHHHHhHHhhccCCCccH-HHHHHHHHHHhHhHHHHHHHHHhhcCCchHHHHHHHHHHHHHHHHHhcCC
Q 039541          331 LLTIMALAFGIGVVYFGLLLGVGNLSFNI-YLSLAFNGLLDIPAYLLTFILIERWSRKSSILTFCILSGTCSAICVAIGD  409 (521)
Q Consensus       331 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~i~~~~~~~~~~  409 (521)
                      .+................+.++++.+.+. .......+++.+++.++.+++.||+++|+.+..+..+.+++.+++...++
T Consensus       222 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~  301 (392)
T PRK12382        222 GLGLALQGVGFAVIGTFVSLYFASKGWAMAGFTLTAFGGAFVLMRVLFGWMPDRFGGVKVAIVSLLVETVGLLLLWLAPT  301 (392)
T ss_pred             HHHHHHHHHHHhHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHHHhcCCCeehHHHHHHHHHHHHHHHHccc
Confidence            11111122222222222333334444332 23334455667788999999999999999988888888887766655443


Q ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHhhccccCchhhhhhhHHHHHhhhhhhhHHHHHHHh--hccchhHHHHHHHHHHH
Q 039541          410 EQEVLQIGLELASFFSACVAFNVLLVFGTELFTTCVRNSTTSLVRQAVNLGAAFSPVLISA--GRQNEFLSFGVFGLVVF  487 (521)
Q Consensus       410 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~p~~~~~--~~~~~~~~~~~~~~~~~  487 (521)
                      .  +...+..++.+++.+...+.......|.+|++.|+++.|+.+....+|..++|.+.+.  ...++...+.+.+++.+
T Consensus       302 ~--~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~ig~~~~g~l~~~~g~~~~~~~~~~~~~  379 (392)
T PRK12382        302 A--WVALAGAALTGAGCSLIFPALGVEVVKRVPSQVRGTALGGYAAFQDIAYGVSGPLAGMLATSFGYPSVFLAGAISAV  379 (392)
T ss_pred             H--HHHHHHHHHHHHHHHhHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHH
Confidence            2  4455566777777777778888888899999999999999999999999999999986  33467777888777777


Q ss_pred             HHhHhhh
Q 039541          488 CFGFFVV  494 (521)
Q Consensus       488 ~~~~~~~  494 (521)
                      ++.+..+
T Consensus       380 ~~~~~~~  386 (392)
T PRK12382        380 LGIIVTI  386 (392)
T ss_pred             HHHHHHH
Confidence            7666544

>TIGR00900 2A0121 H+ Antiporter protein

Probab=99.98  E-value=2.8e-30  Score=251.71  Aligned_cols=327  Identities=13%  Similarity=0.016  Sum_probs=253.0

Q ss_pred             CcceeeecceeeCCccccchhhHHHHHHHHHHhhhhhhhccccCCCCchHHHHHHHHHHHHHHHHHhccc-----cHHHH
Q 039541          101 DTTIISDWSLECAGSSILSGLPSSCFFIGCLLGGLALSTLGDSSSLGRKKLLFLSCFAMSITALATIFAN-----NIWIY  175 (521)
Q Consensus       101 ~~~i~~~~~~~~~~~~~~~~~~~s~~~lg~~i~~~~~g~l~dr~~~Grr~~l~~~~~~~~~~~~~~~~~~-----~~~~l  175 (521)
                      +|.+..+++.+..+.    +++.+++.++..++++++|+++||  +|||++++.+.++.+++.++.++++     +++.+
T Consensus        22 ~~~~~~~~~~s~~~~----g~~~~~~~~~~~i~~~~~G~l~dr--~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   95 (365)
T TIGR00900        22 LPLYVLAGTGSASVL----SLAALAGMLPYVVLSPIAGALADR--YDRKKVMIGADLIRAVLVAVLPFVALLGGLNIWQV   95 (365)
T ss_pred             HHHHHHHhhccHHHH----HHHHHHHHHHHHHHHHhhhHHHHh--hchhHHHHHHHHHHHHHHHHHHHHHHcCCCcHHHH
Confidence            677778888888665    999999999999999999999999  9999999999999999999888887     99999


Q ss_pred             HHHHHHhhccchhhHhhhhhheeeeecCcchhHHHHHHHHHHHHHHHHHHHH-HHhhcCCchhHHHHHHHHHHHHHHhhh
Q 039541          176 STIRFVAGFFRAPIMTSVIVLLSEMVSKRWRGQVVIIGFTFFSFGLVSLPAV-AYLSRGSSWKMLYVWTSIPSIVCCIII  254 (521)
Q Consensus       176 ~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~rg~~~~~~~~~~~~G~~i~~~i-~~~~~~~~wr~~f~~~~~~~~~~~~~~  254 (521)
                      ++.|++.|++.+...+...+++.|++|+++|++++++.+.+..+|.+++|.+ +.+.+..+||+.|++.++..++..++.
T Consensus        96 ~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~g~~~~~~~~~~~~~~~~~~~  175 (365)
T TIGR00900        96 YVLAGILAIAQAFFTPAYQAMLPDLVPEEQLTQANSLSQAVRSLFYIVGPGIGGLMYATLGIKWAIWVDAVGFAISALLI  175 (365)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999999999999998 666677899999998887666655333


Q ss_pred             cee-eecchhHHHhcCCHHHHHHHHHHHhhhcCCCCCCCccccccCCCCCccccCCCcccccccHHHHhccHHHHHHHHH
Q 039541          255 YPF-ISESPRWLFIHGHEAEAMAVLKRLASRSNYQSDYGLESCCLSNMPPKAKNVIPKLDLYSSLKDLFNRKWALRRLLT  333 (521)
Q Consensus       255 ~~~-~~esp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~  333 (521)
                      +.. .||+++.    ++.+..++..+                                 +..+.++.++++|.++...+.
T Consensus       176 ~~~~~~~~~~~----~~~~~~~~~~~---------------------------------~~~~~~~~~~~~~~~~~~~~~  218 (365)
T TIGR00900       176 VSVRIPELAAS----EIQALSNAVLR---------------------------------DTREGIKFVLKNPLLRTLLLL  218 (365)
T ss_pred             HhcccccCCCc----cccccchhHHH---------------------------------HHHhHHHHHHcCcHHHHHHHH
Confidence            222 2332110    00000000000                                 011256677888887666555


Q ss_pred             HHHHHHHHHHHH-HhHHhhccC-CCccHH---HHHHHHHHHhHhHHHHHHHHHhhcCCchHHHHHHHHHHHHHHHHHhcC
Q 039541          334 IMALAFGIGVVY-FGLLLGVGN-LSFNIY---LSLAFNGLLDIPAYLLTFILIERWSRKSSILTFCILSGTCSAICVAIG  408 (521)
Q Consensus       334 ~~~~~~~~~~~~-~~~~~~~~~-~~~~~~---~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~i~~~~~~~~~  408 (521)
                      ............ ...|++.++ .+.+..   ......+++.+++.++.+++.||++||+.+..+..+.+++...+.+..
T Consensus       219 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  298 (365)
T TIGR00900       219 ALLFNLVFAPAIVALFPYVQSKYLGRGSTHYGWVLAAFGLGALLGALLLGLLGRYFKRMALMTGAIFVIGLAILVVGLTP  298 (365)
T ss_pred             HHHHHHHHHHHHHHHhHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHHhhc
Confidence            555544443333 445665554 444432   333455677788999999999999999988888777777776666654


Q ss_pred             CchHHHHHHHHHHHHHHHHHHHHHHHHhhccccCchhhhhhhHHHHHhhhhhhhHHHHHHHhh
Q 039541          409 DEQEVLQIGLELASFFSACVAFNVLLVFGTELFTTCVRNSTTSLVRQAVNLGAAFSPVLISAG  471 (521)
Q Consensus       409 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~p~~~~~~  471 (521)
                      . +.+...+..++.+++.+...+...++..|.+|++.|+++.|+.+....++..++|.+.|..
T Consensus       299 ~-~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~g~~~~g~l  360 (365)
T TIGR00900       299 P-NFPLFLVLWFAIGVGYGPINVPQGTLLQRRVPAELLGRVFGAQFSLSHAAWPLGLILAGPL  360 (365)
T ss_pred             h-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3 2355667778888888888899999999999999999999999999999999999998864

>PRK03699 putative transporter; Provisional

Probab=99.98  E-value=5.1e-30  Score=251.72  Aligned_cols=368  Identities=12%  Similarity=0.111  Sum_probs=265.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHhhhhccccCCcccccCCcccccCCccccccccCcceecCCCCcceeeecceeeCCccccch
Q 039541           41 QFIQVILISLLLIFESQQTFISVYTDEEPTWHCINNTTTCSSSSDICTLSKSAWAWDRPSDTTIISDWSLECAGSSILSG  120 (521)
Q Consensus        41 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~p~~~c~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~  120 (521)
                      +++....+++..++.+.+....+..                                   +|++.+++|++.++.    +
T Consensus         5 ~~~~~~~~~~~~~~~~~~~~~~g~~-----------------------------------~~~i~~~~~~s~~~~----g   45 (394)
T PRK03699          5 RIKLTWISFLSYALTGALVIVTGMV-----------------------------------MGPIAEYFNLPVSSM----S   45 (394)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHhhh-----------------------------------hHHHHHHhCCCHHHH----H
Confidence            3456667777888888888888888                                   999999999999776    9


Q ss_pred             hhHHHHHHHHHHhhhhhhhccccCCCCchHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHhhccchhhHhhhhhheeee
Q 039541          121 LPSSCFFIGCLLGGLALSTLGDSSSLGRKKLLFLSCFAMSITALATIFANNIWIYSTIRFVAGFFRAPIMTSVIVLLSEM  200 (521)
Q Consensus       121 ~~~s~~~lg~~i~~~~~g~l~dr~~~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~  200 (521)
                      ++.+.+.+++.+++++.|++.||  +|||+++..+.++.+++.++++++++++.+++.|+++|++.|...+...+++.|+
T Consensus        46 ~~~s~~~~~~~i~~~~~g~l~dr--~g~r~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~G~~~g~~~~~~~~~i~~~  123 (394)
T PRK03699         46 NTFTFLNAGILISIFLNAWLMEI--IPLKRQLIFGFALMILAVAGLMFSHSLALFSIAMFVLGVVSGITMSIGTFLITHV  123 (394)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHH--hhHHHHHHHHHHHHHHHHHHHHHcchHHHHHHHHHHHHHhhHhhccchhHHhhhh
Confidence            99999999999999999999999  9999999999999999999999999999999999999999999999999999999


Q ss_pred             ecCcchhHHHHHHHHHHHHHHHHHHHH-HHhh-cCCchhHHHHHHHHHHHHHHhhhceeeecchhHHHhcCCHHHHHHHH
Q 039541          201 VSKRWRGQVVIIGFTFFSFGLVSLPAV-AYLS-RGSSWKMLYVWTSIPSIVCCIIIYPFISESPRWLFIHGHEAEAMAVL  278 (521)
Q Consensus       201 ~~~~~rg~~~~~~~~~~~~G~~i~~~i-~~~~-~~~~wr~~f~~~~~~~~~~~~~~~~~~~esp~~~~~~~~~~~~~~~~  278 (521)
                      +|+++|+++++..+....+|..++|.+ +.+. ...+||+.|.+.+++.++..++.+ + ++.|+.       ++     
T Consensus       124 ~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~gw~~~f~~~~~~~~~~~~~~~-~-~~~p~~-------~~-----  189 (394)
T PRK03699        124 YEGKQRGSRLLFTDSFFSMAGMIFPIIAAYLLARSIEWYWVYACIGLVYVAIFILTL-F-SEFPAL-------GK-----  189 (394)
T ss_pred             cccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHH-h-cCCccc-------cc-----
Confidence            999999999999988899998888887 5554 457999999988887776653332 2 222210       00     


Q ss_pred             HHHhhhcCCCCCCCccccccCCCCCccccCCCcccccccHHHHhccHHHHHHHHHHHHHHHHHHHHHHhHHhhc-cCCCc
Q 039541          279 KRLASRSNYQSDYGLESCCLSNMPPKAKNVIPKLDLYSSLKDLFNRKWALRRLLTIMALAFGIGVVYFGLLLGV-GNLSF  357 (521)
Q Consensus       279 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~  357 (521)
                            .+.+               ++  ++       ..+.. .++.++...+..++............|.++ +..+.
T Consensus       190 ------~~~~---------------~~--~~-------~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~  238 (394)
T PRK03699        190 ------HAPK---------------AD--KP-------VAKEK-WGIGVLFLAIAALLYILAQLTFISWVPEYAQKKFGM  238 (394)
T ss_pred             ------cCcc---------------cc--Cc-------ccccc-CChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence                  0000               00  00       00000 123332222222222223323333445555 44566


Q ss_pred             cHHHHH---HHHHHHhHhHHHHHHHHHhhcCCchHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHH
Q 039541          358 NIYLSL---AFNGLLDIPAYLLTFILIERWSRKSSILTFCILSGTCSAICVAIGDEQEVLQIGLELASFFSACVAFNVLL  434 (521)
Q Consensus       358 ~~~~~~---~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  434 (521)
                      +.....   ....++..++.++.+++.||+++|+.+.....+..+.+.++....+.  +...+..++.+++.+..++...
T Consensus       239 s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~~~~~~l~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~G~~~~~~~~~~~  316 (394)
T PRK03699        239 SLEDAGNLVSNFWMAYMVGMWIFSFIVRFFDLQRILTVLAGLALVLMYLFVNTDDP--SHLLYAILGLGFFSSAIYTTII  316 (394)
T ss_pred             ChHHhhHHHHHHHHHHHHHHHHHHHHHHHhchhhHHHHHHHHHHHHHHHHHHcCCc--hHHHHHHHHHHHHHHHHHHHHH
Confidence            554333   34456778899999999999999998887777666665555443333  3444556677777777788877


Q ss_pred             HhhccccCchhhhhhhHHHHHhhhhhhhHHHHHHHhh--ccchhHHHHHHHHHHHHHhHhhhccc
Q 039541          435 VFGTELFTTCVRNSTTSLVRQAVNLGAAFSPVLISAG--RQNEFLSFGVFGLVVFCFGFFVVFLP  497 (521)
Q Consensus       435 ~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~p~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~  497 (521)
                      +...|..|.+ ++...+.......+|..++|.+.|+.  ..+....+.+.+++.+++.+.....+
T Consensus       317 ~~~~~~~~~~-~~~~~g~~~~~~~~g~~i~p~~~G~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~  380 (394)
T PRK03699        317 TLGSQQTKVA-SPKLVNFILTCGTIGTMLTFVVTSPIVAHFGLQAALLTANGLYAVVFVMCILLG  380 (394)
T ss_pred             HHHHHHccCC-CHHHHHHHHHhhhHHHHHHHHHHHHHHHHhCchhhhhhhHHHHHHHHHHHHHHH
Confidence            7777777644 57778888888899999999999863  34566666666666666655544444

>PF07690 MFS_1: Major Facilitator Superfamily; InterPro: IPR011701 Among the different families of transporter, only two occur ubiquitously in all classifications of organisms

Probab=99.98  E-value=2.8e-31  Score=257.42  Aligned_cols=325  Identities=21%  Similarity=0.258  Sum_probs=243.9

Q ss_pred             Cc-ceeeecceeeCCccccchhhHHHHHHHHHHhhhhhhhccccCCCCchHHHHHHHHHHHHHHHHHhccccHHHHHHHH
Q 039541          101 DT-TIISDWSLECAGSSILSGLPSSCFFIGCLLGGLALSTLGDSSSLGRKKLLFLSCFAMSITALATIFANNIWIYSTIR  179 (521)
Q Consensus       101 ~~-~i~~~~~~~~~~~~~~~~~~~s~~~lg~~i~~~~~g~l~dr~~~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r  179 (521)
                      +| .+.+++|.+.++.    +++.+++.++..+++++.|+++||  +|||+++.++.++.+++.++..+++|++.+++.|
T Consensus        19 ~~~~~~~~~~~s~~~~----~~~~~~~~~~~~~~~~~~g~l~dr--~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~   92 (352)
T PF07690_consen   19 LPLYLAEELGLSPSQI----GLLFSAFFLGSALFSPFAGYLSDR--FGRRRVLIIGLLLFALGSLLLAFASNFWLLLIAR   92 (352)
T ss_dssp             HH-HHHCCSTTTSHCH----HHHHHHHHHHHHHHHHHHHHHHHH--S-HHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHH
T ss_pred             HHHHHHHccCCCHHHH----HHHHHHHHHHHHHHHHHHHHHHHH--cCCeeeEeehhhhhhhHHHHhhhhhhHHHHhhhc
Confidence            77 8899999999777    999999999999999999999999  9999999999999999977777778888999999


Q ss_pred             HHhhccchhhHhhhhhheeeeecCcchhHHHHHHHHHHHHHHHHHHHH-HHhhcCCchhHHHHHHHHHHHHHHhhhceee
Q 039541          180 FVAGFFRAPIMTSVIVLLSEMVSKRWRGQVVIIGFTFFSFGLVSLPAV-AYLSRGSSWKMLYVWTSIPSIVCCIIIYPFI  258 (521)
Q Consensus       180 ~l~G~~~g~~~~~~~~~i~~~~~~~~rg~~~~~~~~~~~~G~~i~~~i-~~~~~~~~wr~~f~~~~~~~~~~~~~~~~~~  258 (521)
                      ++.|++.+...+...+++.|++|+++|++++++...+..+|.+++|.+ +.+.+..+||+.|++.+++.++..++...++
T Consensus        93 ~l~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~~~~~~~~~~~~~~~~~~il~~~~~  172 (352)
T PF07690_consen   93 FLLGIGSGFFSPASNALIADWFPPEERGRAFGILSAGFSLGSILGPLLGGFLISYFGWRWAFLISAILSLIAAILFILFL  172 (352)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHCCCTCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHCHHCCHHHHHHHHHHHHHHHHHCCC
T ss_pred             cccccccccccccccccccccchhhhhhhccccccchhhhhhhcccchhhhhhhccccccccccccchhhhhhhhHhhhh
Confidence            999999999999999999999999999999999999999999999999 5666678999999999999998875444555


Q ss_pred             ecchhHHHhcCCHHHHHHHHHHHhhhcCCCCCCCccccccCCCCCccccCCCcccccc-cHHHHhccHHHHHHHHHHHHH
Q 039541          259 SESPRWLFIHGHEAEAMAVLKRLASRSNYQSDYGLESCCLSNMPPKAKNVIPKLDLYS-SLKDLFNRKWALRRLLTIMAL  337 (521)
Q Consensus       259 ~esp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~~~~~  337 (521)
                      +++|+....+.+.++                                  +.+.++... .++.+++++.++......+..
T Consensus       173 ~~~~~~~~~~~~~~~----------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  218 (352)
T PF07690_consen  173 PEPPPPRERESPKES----------------------------------ESKKPKPLKPGFKSLFKNPVLWILLIAFFLF  218 (352)
T ss_dssp             ---STTTT--SSTTT----------------------------------T--HHHCCCH-CTHHHHHHCCHHHHHHHHHH
T ss_pred             hhccccccccccccc----------------------------------ccccccccccccccccccchhhhhhhhhhHH
Confidence            554321000000000                                  000000011 245566666554223333333


Q ss_pred             HHHHHHHHHhHHhh-ccCCCcc-HHHHH---HHHHHHhHhHHHHHHHHHhhcCCchHHHHHHHHHHHHHHHHHhcCCc-h
Q 039541          338 AFGIGVVYFGLLLG-VGNLSFN-IYLSL---AFNGLLDIPAYLLTFILIERWSRKSSILTFCILSGTCSAICVAIGDE-Q  411 (521)
Q Consensus       338 ~~~~~~~~~~~~~~-~~~~~~~-~~~~~---~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~i~~~~~~~~~~~-~  411 (521)
                      .+.........|.+ .+..+.+ .....   .+..+..+++.++.+++.||+++|+..........+..+.+...... +
T Consensus       219 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  298 (352)
T PF07690_consen  219 FFVFSGFSFFLPLYLQEVLGFSGPSQAGLLFSIFGIVGIIGSLLAGRLSDRFGRRRRLLIAILLLILGALGLLLLPFSSS  298 (352)
T ss_dssp             HHHHHHHHHHHHHHCCHHHHCCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCSHHHCH
T ss_pred             HHHHHHhhcccchhhhhccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence            33444444555554 4555555 34333   44556667778999999999999887777777666666655544333 2


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhccccCchhhhhhhHHHHHhhhhhhhHHH
Q 039541          412 EVLQIGLELASFFSACVAFNVLLVFGTELFTTCVRNSTTSLVRQAVNLGAAFSP  465 (521)
Q Consensus       412 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~p  465 (521)
                      ..+.....++.+++.+...+....+..|.+|++.|+++.|+.+...++|+.++|
T Consensus       299 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~igP  352 (352)
T PF07690_consen  299 PVWLIIALFLIGFGFGIVFPILFSLIQELVPPEYRGTAFGLFNSIGSLGGIIGP  352 (352)
T ss_dssp             HHHHHHHHHHHHHHHHHHCHHHHHHHHCCCHTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHCC
Confidence            245566777788888888999999999999999999999999999999999988

These are the ATP-Binding Cassette (ABC) superfamily and the Major Facilitator Superfamily (MFS). The MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients [, ].; GO: 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2GFP_B 3O7P_A 3O7Q_A 1PW4_A.

>PRK03633 putative MFS family transporter protein; Provisional

Probab=99.98  E-value=1.7e-29  Score=246.95  Aligned_cols=356  Identities=14%  Similarity=0.103  Sum_probs=254.6

Q ss_pred             HHHHHHHHHHHHHHHhhhhccccCCcccccCCcccccCCccccccccCcceecCCCCcceeeecceeeCCccccchhhHH
Q 039541           45 VILISLLLIFESQQTFISVYTDEEPTWHCINNTTTCSSSSDICTLSKSAWAWDRPSDTTIISDWSLECAGSSILSGLPSS  124 (521)
Q Consensus        45 ~~~~~l~~~~~~~~~~~~~~~~~~p~~~c~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~s  124 (521)
                      +.++.++.++.........+.                                   +|.+.+++|.+.++.    |++.+
T Consensus         8 ~~~~~~~~~~~~~~~~~~~~~-----------------------------------lp~~~~~~~~s~~~~----G~~~s   48 (381)
T PRK03633          8 VLLLLCGLLLLTLAIAVLNTL-----------------------------------VPLWLAQEHLPTWQV----GVVSS   48 (381)
T ss_pred             HHHHHHHHHHHHHhhhhHHHH-----------------------------------HHHHHHHcCCCHHHH----HHHHH
Confidence            445556777777787778788                                   899999999998666    99999


Q ss_pred             HHHHHHHHhhhhhhhccccCCCCchHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHhhccchhhHhhhhhheeeeecCc
Q 039541          125 CFFIGCLLGGLALSTLGDSSSLGRKKLLFLSCFAMSITALATIFANNIWIYSTIRFVAGFFRAPIMTSVIVLLSEMVSKR  204 (521)
Q Consensus       125 ~~~lg~~i~~~~~g~l~dr~~~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~  204 (521)
                      .+.++..+++++.|+++||  +|||+++..+.++.+++.+++++++|++.+++.|+++|++.+...+...+.+.+..+++
T Consensus        49 ~~~l~~~~~~~~~g~l~dr--~g~k~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~  126 (381)
T PRK03633         49 SYFTGNLVGTLLAGYVIKR--IGFNRSYYLASLIFAAGCAGLGLMVGFWSWLAWRFVAGIGCAMIWVVVESALMCSGTSR  126 (381)
T ss_pred             HHHHHHHHHHHhHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHH
Confidence            9999999999999999999  99999999999999999999999999999999999999999998888888888889999


Q ss_pred             chhHHHHHHHHHHHHHHHHHHHHHH-hhcCCchhHHHHHHHHHHHHHHhhhceeeecchhHHHhcCCHHHHHHHHHHHhh
Q 039541          205 WRGQVVIIGFTFFSFGLVSLPAVAY-LSRGSSWKMLYVWTSIPSIVCCIIIYPFISESPRWLFIHGHEAEAMAVLKRLAS  283 (521)
Q Consensus       205 ~rg~~~~~~~~~~~~G~~i~~~i~~-~~~~~~wr~~f~~~~~~~~~~~~~~~~~~~esp~~~~~~~~~~~~~~~~~~~~~  283 (521)
                      +|++++++...+.++|..+||.++. +.+...|+..+ ..+........+.+...++++                     
T Consensus       127 ~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~---------------------  184 (381)
T PRK03633        127 NRGRLLAAYMMVYYLGTVLGQLLVSKVSTELMSVLPW-VTGLVLAAILPLLFTRILNQQ---------------------  184 (381)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhcccccccchHHH-HHHHHHHHHHHHHHhcccCCC---------------------
Confidence            9999999999999999999999954 44432233332 222222221111111111110                     


Q ss_pred             hcCCCCCCCccccccCCCCCccccCCCcccccccHHHHhccHHHHHHHHHHHHHHHHHHHHHHhHHhhccCCCccHHHH-
Q 039541          284 RSNYQSDYGLESCCLSNMPPKAKNVIPKLDLYSSLKDLFNRKWALRRLLTIMALAFGIGVVYFGLLLGVGNLSFNIYLS-  362 (521)
Q Consensus       284 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-  362 (521)
                       .                  +   ++    ...+.++++++|.++......+...+.....+..+|.+.++.+.+.... 
T Consensus       185 -~------------------~---~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~~~~~g~s~~~~g  238 (381)
T PRK03633        185 -A------------------E---NH----DSTSIWPMLKLRQARLGVNGCIISGIVLGSLYGLMPLYLNHQGMSDASIG  238 (381)
T ss_pred             -C------------------C---CC----CCCCHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHH
Confidence             0                  0   00    0014456677776554332223333333444445676666666554332 


Q ss_pred             --HHHHHHHhHhHHHHHHHHHhhcCCchHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Q 039541          363 --LAFNGLLDIPAYLLTFILIERWSRKSSILTFCILSGTCSAICVAIGDEQEVLQIGLELASFFSACVAFNVLLVFGTEL  440 (521)
Q Consensus       363 --~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  440 (521)
                        .....++.+++.+..+++.||+++|+.+..+..+..++...+.  ..   ........+.+++.....+.....+.|.
T Consensus       239 ~~~~~~~~~~~~~~~~~g~l~dr~~~~~~l~~~~~~~~~~~~~~~--~~---~~~~~~~~l~g~~~~~~~p~~~~~~~~~  313 (381)
T PRK03633        239 FWMALLVSAGILGQWPIGRLADRFGRLLVLRVQVFVVILGSIAML--SQ---AAMAPALFILGAAGFTLYPVAMAWACEK  313 (381)
T ss_pred             HHHHHHHHHHHHHHhhhHHHHHHcCcHHHHHHHHHHHHHHHHHHh--hh---HHHHHHHHHHHHHHHhHHHHHHHHHHcc
Confidence              3345567788999999999999999988888777776655443  11   1223344555655566778888888999


Q ss_pred             cCchhhhhhhHHHHHhhhhhhhHHHHHHHhh--ccchhHHHHHHHHHHHHHhHhhh
Q 039541          441 FTTCVRNSTTSLVRQAVNLGAAFSPVLISAG--RQNEFLSFGVFGLVVFCFGFFVV  494 (521)
Q Consensus       441 ~~~~~r~~~~~~~~~~~~~g~~~~p~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~  494 (521)
                      .|++.++.+.+..+....+|++++|.+.|+.  ..++...|.+.+.+.++..+..+
T Consensus       314 ~~~~~~~~~~~~~~~~~~lG~~igp~~~G~l~~~~g~~~~f~~~~~~~l~~~~~~~  369 (381)
T PRK03633        314 VEHHELVAMNQALLLSYTVGSLLGPSFTAMLMQNYSDNLLFIMIASVSFIYLLMLL  369 (381)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHHH
Confidence            9988888888888888899999999999973  34566677776666665544433

>TIGR00712 glpT glycerol-3-phosphate transporter

Probab=99.97  E-value=1.6e-29  Score=251.62  Aligned_cols=395  Identities=11%  Similarity=0.017  Sum_probs=258.8

Q ss_pred             hHHHHHHHHHHHHHHHHHHHhhhhccccCCcccccCCcccccCCccccccccCcceecCCCCcceeeecceeeCCccccc
Q 039541           40 PQFIQVILISLLLIFESQQTFISVYTDEEPTWHCINNTTTCSSSSDICTLSKSAWAWDRPSDTTIISDWSLECAGSSILS  119 (521)
Q Consensus        40 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~p~~~c~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~  119 (521)
                      .++..+....+.+.....+.....+.                                   .|.+++ +|++.++.    
T Consensus        24 ~~~~~~~~~~~~~~~~~~~~~~~~~~-----------------------------------~p~~~~-~g~s~~~~----   63 (438)
T TIGR00712        24 LRWQVFLGIFFGYAAYYLVRKNFALA-----------------------------------MPYLVE-QGFSKGEL----   63 (438)
T ss_pred             HHHHHHHHHHHHHHHHHHHhccHHhh-----------------------------------hHHHHH-cCCCHhHh----
Confidence            34566666666667777777766777                                   777776 59998777    


Q ss_pred             hhhHHHHHHHHHHhhhhhhhccccCCCCchHHHHHHHHHHHHHHHHHhcc----ccHHHHHHHHHHhhccchhhHhhhhh
Q 039541          120 GLPSSCFFIGCLLGGLALSTLGDSSSLGRKKLLFLSCFAMSITALATIFA----NNIWIYSTIRFVAGFFRAPIMTSVIV  195 (521)
Q Consensus       120 ~~~~s~~~lg~~i~~~~~g~l~dr~~~Grr~~l~~~~~~~~~~~~~~~~~----~~~~~l~~~r~l~G~~~g~~~~~~~~  195 (521)
                      +++.+++.++..+++++.|+++||  +|||+++..+.++.+++.++.++.    ++++.+.+.|++.|++.|...+....
T Consensus        64 g~~~~~~~~~~~~~~~~~G~l~dr--~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~~~g~~~~~~~~  141 (438)
T TIGR00712        64 GFALSAISIAYGFSKFIMGSVSDR--SNPRVFLPAGLILSAAVMLLMGFVPWATSSIAIMFVLLFLNGWFQGMGWPPCGR  141 (438)
T ss_pred             HHHHHHHHHHHHHhhhccchhhhc--cCCceehHHHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHhhcchHHHHH
Confidence            999999999999999999999999  999999999999999999887764    46788889999999999998898889


Q ss_pred             heeeeecCcchhHHHHHHHHHHHHHHHHHHHH-HHhhc-CCchhHHHHHHHHHHHHHHhhhceeeecchhHHHhcCCHHH
Q 039541          196 LLSEMVSKRWRGQVVIIGFTFFSFGLVSLPAV-AYLSR-GSSWKMLYVWTSIPSIVCCIIIYPFISESPRWLFIHGHEAE  273 (521)
Q Consensus       196 ~i~~~~~~~~rg~~~~~~~~~~~~G~~i~~~i-~~~~~-~~~wr~~f~~~~~~~~~~~~~~~~~~~esp~~~~~~~~~~~  273 (521)
                      ++.|++|+++|++++++.+.+..+|..+++.+ +.... ..+||+.|++.+++.++..++.++++||+|+....+ +.++
T Consensus       142 ~i~~~~~~~~rg~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~w~~~f~~~~~~~~i~~~~~~~~~~~~~~~~~~~-~~~~  220 (438)
T TIGR00712       142 TMVHWWSQSERGTIVSIWNCAHNIGGGIPPLLVLLGMAWFNDWHAALYFPAICAIIVALFAFAMMRDTPQSCGLP-PIEE  220 (438)
T ss_pred             HHHHhcCcccchhHHHHHHHHHHhHhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHhccCCHHhcCCC-Cchh
Confidence            99999999999999999999999999988766 54443 469999999999888887656677788876531100 0000


Q ss_pred             HHHHHHHHhhhcCCCCCCCccccccCCCCCccccCCCccccccc-HHHHhccHHHHHHHHHHHHHHHHHHHHHHhHHhhc
Q 039541          274 AMAVLKRLASRSNYQSDYGLESCCLSNMPPKAKNVIPKLDLYSS-LKDLFNRKWALRRLLTIMALAFGIGVVYFGLLLGV  352 (521)
Q Consensus       274 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  352 (521)
                      .          +++..+        +. ..+  + +++.+.++. .+.+++++.++...+...+............|.++
T Consensus       221 ~----------~~~~~~--------~~-~~~--~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l  278 (438)
T TIGR00712       221 Y----------RNDYPD--------DY-NEK--A-EQELTAKEIFMQYVLPNKLLWYIAIANVFVYLLRYGVLDWSPTYL  278 (438)
T ss_pred             c----------cccccc--------cc-ccc--c-ccccchHHHHHHHHccCchHHHHHHHHHHHHHHHHHHHHhHHHHH
Confidence            0          000000        00 000  0 000000111 23467888776665554444444333334445555


Q ss_pred             cC-CCccHH---HHHHHHHHHhHhHHHHHHHHHhhcCCchHHHHHHHHHH---HHHHHHHhcCCchHHHHHHHHHHHHHH
Q 039541          353 GN-LSFNIY---LSLAFNGLLDIPAYLLTFILIERWSRKSSILTFCILSG---TCSAICVAIGDEQEVLQIGLELASFFS  425 (521)
Q Consensus       353 ~~-~~~~~~---~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~---i~~~~~~~~~~~~~~~~~~~~~~~~~~  425 (521)
                      ++ .+.+..   ....+..+.++++.++.|++.||+++++....+.....   ++.+.+......+.+......+..+++
T Consensus       279 ~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~  358 (438)
T TIGR00712       279 KEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFKGNRGATGVFFMTLVTIAVIVYWMNPAGNPLVDMICMIVIGFL  358 (438)
T ss_pred             HHccCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhccCcccHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHH
Confidence            43 455543   33445667788899999999999965432222222211   111222222221212222333333433


Q ss_pred             HHHHHHHHHHhhccccCchhhhhhhHHHHHhhhhhh-hHHHHHHHh--hccchhHHHHHHHHHHHHHhHh-hhccccC
Q 039541          426 ACVAFNVLLVFGTELFTTCVRNSTTSLVRQAVNLGA-AFSPVLISA--GRQNEFLSFGVFGLVVFCFGFF-VVFLPET  499 (521)
Q Consensus       426 ~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~-~~~p~~~~~--~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~  499 (521)
                      .............|.+|++.|+++.|+.+....+|+ +++|.+.|.  ...++...+.+..++.+++.+. .+.++|.
T Consensus       359 ~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~gg~~~gp~l~G~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~  436 (438)
T TIGR00712       359 IYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFGWDGGFMVMIGGSILAVILLIVVMIGE  436 (438)
T ss_pred             HccHHHHHHHHHHHhcChhheeeehhhhchHHHhhhhhhcchhHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHhhc
Confidence            222222334567799999999999999998888875 689999886  3345667777666666555554 3445554

This model describes a very hydrophobic protein, predicted to span the membrane at least 8 times. The two members confirmed experimentally as glycerol-3-phosphate transporters, from E. coli and B. subtilis, share more than 50 % amino acid identity. Proteins of the hexose phosphate and phosphoglycerate transport systems are also quite similar.

>PRK15403 multidrug efflux system protein MdtM; Provisional

Probab=99.97  E-value=3.1e-29  Score=246.80  Aligned_cols=341  Identities=12%  Similarity=0.061  Sum_probs=236.1

Q ss_pred             CcceeeecceeeCCccccchhhHHHHHHHHHHhhhhhhhccccCCCCchHHHHHHHHHHHHHHHHHhccccHHHHHHHHH
Q 039541          101 DTTIISDWSLECAGSSILSGLPSSCFFIGCLLGGLALSTLGDSSSLGRKKLLFLSCFAMSITALATIFANNIWIYSTIRF  180 (521)
Q Consensus       101 ~~~i~~~~~~~~~~~~~~~~~~~s~~~lg~~i~~~~~g~l~dr~~~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~  180 (521)
                      +|.+.++++.+.++.    ++..+++.+++.++++++|+++||  +|||++++.+.++++++++++++++|++.++++|+
T Consensus        39 l~~i~~~~~~~~~~~----~~~~s~~~~~~~~~~~~~G~l~dr--~Grr~~l~~~~~~~~~~~~~~~~a~~~~~l~~~r~  112 (413)
T PRK15403         39 IINVVRDFNADVSLA----PASVSLYLAGGMALQWLLGPLSDR--IGRRPVLITGALIFTLACAATLFTTSMTQFLIARF  112 (413)
T ss_pred             HHHHHHHhCCCHHHH----HHHHHHHHHHHHHHHHhhhHHHHH--cCchHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence            899999999999776    999999999999999999999999  99999999999999999999999999999999999


Q ss_pred             HhhccchhhHhhhhhheeeeecCcchhHHHHHHHHHHHHHHHHHHHHH-HhhcCCchhHHHHHHHHHHHHHHhhhceeee
Q 039541          181 VAGFFRAPIMTSVIVLLSEMVSKRWRGQVVIIGFTFFSFGLVSLPAVA-YLSRGSSWKMLYVWTSIPSIVCCIIIYPFIS  259 (521)
Q Consensus       181 l~G~~~g~~~~~~~~~i~~~~~~~~rg~~~~~~~~~~~~G~~i~~~i~-~~~~~~~wr~~f~~~~~~~~~~~~~~~~~~~  259 (521)
                      ++|++.+...+...+++.|++|+++|++++++...+..+|..+||.++ .+.+..|||+.|++.++..++..+..++.+|
T Consensus       113 l~Gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lg~~l~~~~gw~~~f~~~~~~~~i~~~~~~~~lp  192 (413)
T PRK15403        113 IQGTSICFIATVGYVTVQEAFGQTKGIKLMAIITSIVLVAPIIGPLSGAALMHFVHWKVLFAIIAVMGLIAFVGLLLAMP  192 (413)
T ss_pred             HHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhCC
Confidence            999999877777888899999999999999999999999999999994 5666779999999999888877755556678


Q ss_pred             cchhHHHhcCCHHHHHHHHHHHhhhcCCCCCCCccccccCCCCCccccCCCcccccccHHHHhccHHHHHHHHHHHHHHH
Q 039541          260 ESPRWLFIHGHEAEAMAVLKRLASRSNYQSDYGLESCCLSNMPPKAKNVIPKLDLYSSLKDLFNRKWALRRLLTIMALAF  339 (521)
Q Consensus       260 esp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~  339 (521)
                      |+++.   +++..+                                     ..+..++++.++++|.++...+...+...
T Consensus       193 ~~~~~---~~~~~~-------------------------------------~~~~~~~~~~ll~~~~~~~~~l~~~~~~~  232 (413)
T PRK15403        193 ETVKR---GAVPFS-------------------------------------AKSVLRDFRNVFRNRLFLTGAATLSLSYI  232 (413)
T ss_pred             CCccc---cCCCCC-------------------------------------hHHHHHHHHHHHcCHHHHHHHHHHHHHHH
Confidence            86421   000000                                     00001256788899988776665555444


Q ss_pred             HHHHHHHhHHhhccC-CCccHHHHHH---HHHHHhHhHHHHHHHHHhhcCCchHHHHHHHHHHHHHHHHHhc---CCchH
Q 039541          340 GIGVVYFGLLLGVGN-LSFNIYLSLA---FNGLLDIPAYLLTFILIERWSRKSSILTFCILSGTCSAICVAI---GDEQE  412 (521)
Q Consensus       340 ~~~~~~~~~~~~~~~-~~~~~~~~~~---~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~i~~~~~~~~---~~~~~  412 (521)
                      .........|.++++ .+.+......   ....+.+++..+.+.+.+|..+++.......+..++..++...   .....
T Consensus       233 ~~~~~~~~~P~~l~~~~g~s~~~~gl~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~ig~~l~~~~~~~~~~~~  312 (413)
T PRK15403        233 PMMSWVAVSPVILIDAGGMTTSQFAWTQVPVFGAVIVANAIVARFVKDPTEPRFIWRAVPIQLVGLALLIVGNLLWPHVW  312 (413)
T ss_pred             HHHHHHHhChHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccCCchhHHHHHHHHHHHHHHHHHHHHHHccccH
Confidence            444444445655554 3555443332   2334555666666666544444343322222222222222111   11111


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhccccCchhhhhhhHHHHHhhhhhhhHHHHHHHhh-ccchhHHHHHHHHHHHH
Q 039541          413 VLQIGLELASFFSACVAFNVLLVFGTELFTTCVRNSTTSLVRQAVNLGAAFSPVLISAG-RQNEFLSFGVFGLVVFC  488 (521)
Q Consensus       413 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~p~~~~~~-~~~~~~~~~~~~~~~~~  488 (521)
                      +..++..++.+++.+...+..........+ ..+|++.++.+.....+...++...++. ..+...++...+++..+
T Consensus       313 ~~~~~~~~l~~~G~~~~~p~~~~~al~~~~-~~~G~a~a~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~  388 (413)
T PRK15403        313 LWSVLGTSLYAFGIGLIFPTLFRFTLFSNN-LPKGTVSASLNMVILMVMAVSVEIGRWLWFNGGRLPFHLLAVVAGV  388 (413)
T ss_pred             HHHHHHHHHHHHHHHHHhHHHHHHHhccCC-CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHH
Confidence            234556667777777777766643332222 2368888888888877777888777763 33455555555554443

>TIGR00881 2A0104 phosphoglycerate transporter family protein

Probab=99.97  E-value=1.7e-30  Score=254.56  Aligned_cols=343  Identities=15%  Similarity=0.098  Sum_probs=242.5

Q ss_pred             CcceeeecceeeCCccccchhhHHHHHHHHHHhhhhhhhccccCCCCchHHHHHHHHHHHHHHHHHhccccHHHHHHHHH
Q 039541          101 DTTIISDWSLECAGSSILSGLPSSCFFIGCLLGGLALSTLGDSSSLGRKKLLFLSCFAMSITALATIFANNIWIYSTIRF  180 (521)
Q Consensus       101 ~~~i~~~~~~~~~~~~~~~~~~~s~~~lg~~i~~~~~g~l~dr~~~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~  180 (521)
                      .|.+.+++|++.++.    |++.+++.++..+++++.|+++||  +|||++++++.++.+++.++.+++++++.+++.|+
T Consensus        18 ~~~~~~~~g~s~~~~----g~~~~~~~~~~~~~~~~~g~l~dr--~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   91 (379)
T TIGR00881        18 MPYLVEEIGLSKTDL----GLLLSSFSIAYGISKFVMGSVSDR--SNPRVFLPIGLILCAIVNLFFGFSTSLWVMAALWA   91 (379)
T ss_pred             hHHHHHHhCCCHhHH----HHHHHHHHHHHHhhhhhhhHHHHh--hCCeehhHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Confidence            899999999999777    999999999999999999999999  99999999999999999999999999999999999


Q ss_pred             HhhccchhhHhhhhhheeeeecCcchhHHHHHHHHHHHHHHHHHH-HH-HHhhcCCchhHHHHHHHHHHHHHHhhhceee
Q 039541          181 VAGFFRAPIMTSVIVLLSEMVSKRWRGQVVIIGFTFFSFGLVSLP-AV-AYLSRGSSWKMLYVWTSIPSIVCCIIIYPFI  258 (521)
Q Consensus       181 l~G~~~g~~~~~~~~~i~~~~~~~~rg~~~~~~~~~~~~G~~i~~-~i-~~~~~~~~wr~~f~~~~~~~~~~~~~~~~~~  258 (521)
                      +.|++.+...+...+++.|++|+++|++++++.+.+..+|..+++ .+ +.+....+||+.|++.+++.++..++.+++.
T Consensus        92 ~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  171 (379)
T TIGR00881        92 LNGIFQGMGWPPCGRTVTKWFSRSERGTWVSFWNCSHNVGGGLLPPLVLFGIAELYSWHWVFIVPGIIAIIVSLICFLLL  171 (379)
T ss_pred             HHHhhccccCCchHHHHHHhcCHhhheeeEeehhccchhHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHheee
Confidence            999999999999999999999999999999999999999999999 45 4555678999999998888877765777778


Q ss_pred             ecchhHHHhcCCHHHHHHHHHHHhhhcCCCCCCCccccccCCCCCccccCCCcccccccHHHHhccHHHHHHHHHHHHHH
Q 039541          259 SESPRWLFIHGHEAEAMAVLKRLASRSNYQSDYGLESCCLSNMPPKAKNVIPKLDLYSSLKDLFNRKWALRRLLTIMALA  338 (521)
Q Consensus       259 ~esp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~  338 (521)
                      ||+|+...   ..++           ++..      ..+.+..  +++++++....+...+.++++|.++...+......
T Consensus       172 ~~~~~~~~---~~~~-----------~~~~------~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  229 (379)
T TIGR00881       172 RDSPQSCG---LPPA-----------EEMP------NEEPDGD--AEKKEEELTKKQIFLQYVLLNKVLWYISLGYVFVY  229 (379)
T ss_pred             CCCccccc---cCcc-----------ccCc------ccccccc--cccccccccchHHHHHHHHhcchHHHHHHHHHHHH
Confidence            87764210   0000           0000      0000000  00000111111224567788887766555555554


Q ss_pred             HHHHHHHHhHHhhc-cCCCccHH---HHHHHHHHHhHhHHHHHHHHHhhcCC-chHHH-HHH-HHHHHHHHHHHhcCCch
Q 039541          339 FGIGVVYFGLLLGV-GNLSFNIY---LSLAFNGLLDIPAYLLTFILIERWSR-KSSIL-TFC-ILSGTCSAICVAIGDEQ  411 (521)
Q Consensus       339 ~~~~~~~~~~~~~~-~~~~~~~~---~~~~~~~~~~~~~~~~~g~l~dr~g~-~~~~~-~~~-~~~~i~~~~~~~~~~~~  411 (521)
                      ..........+.++ +..+.+..   .......++.+++.++.+++.||..+ |+... ... ....++...........
T Consensus       230 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  309 (379)
T TIGR00881       230 VVRTGILDWSPLYLTQEKGFSKEKASWAFTLYELGGLVGTLLAGWLSDKLFNGRRGPLAVFFMALIIVSLLVYWLNPAAN  309 (379)
T ss_pred             HHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHcchhHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHHHhcCcchh
Confidence            44443333344444 34455433   33445567788999999999998643 33222 221 12222222222212222


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhccccCchhhhhhhHHHHHhhhhhhhHHHHHHHhh
Q 039541          412 EVLQIGLELASFFSACVAFNVLLVFGTELFTTCVRNSTTSLVRQAVNLGAAFSPVLISAG  471 (521)
Q Consensus       412 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~p~~~~~~  471 (521)
                      .+...+..++.++......+....+..|.+|++.|+++.|+.+....+|+.++|.+.|..
T Consensus       310 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~~g~l  369 (379)
T TIGR00881       310 PLMDLICLFALGFLVYGPQMLIGVIASELAPKKAAGTAAGFVGFFAYLGGILAGLPLGYL  369 (379)
T ss_pred             HHHHHHHHHHHHHHHhhhhHHHHHHHHHhcCcchhHHHHHHHHHhhhhhhhhhhhhHHHH
Confidence            233444455555555555566678889999999999999999999999999999998863

>PRK10133 L-fucose transporter; Provisional

Probab=99.97  E-value=5.1e-29  Score=246.45  Aligned_cols=347  Identities=12%  Similarity=0.095  Sum_probs=252.3

Q ss_pred             ChhHHHHHHHHHHHHHHHHHHHhhhhccccCCcccccCCcccccCCccccccccCcceecCCCCcceeeecceeeCCccc
Q 039541           38 GLPQFIQVILISLLLIFESQQTFISVYTDEEPTWHCINNTTTCSSSSDICTLSKSAWAWDRPSDTTIISDWSLECAGSSI  117 (521)
Q Consensus        38 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~p~~~c~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~  117 (521)
                      ++.....+.++.+..+..++........                                   .|.+++++|+++++.  
T Consensus        21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------------------------------~p~i~~~~~~s~~~~--   63 (438)
T PRK10133         21 SRSYIIPFALLCSLFFLWAVANNLNDIL-----------------------------------LPQFQQAFTLTNFQA--   63 (438)
T ss_pred             cchhHHHHHHHHHHHHHHHHHHHHHHHH-----------------------------------HHHHHHHhCCCHHHH--
Confidence            3444556666777778888888888888                                   899999999999776  


Q ss_pred             cchhhHHHHHHHHHHhhhhhhhccccCCCCchHHHHHHHHHHHHHHHHH---hccccHHHHHHHHHHhhccchhhHhhhh
Q 039541          118 LSGLPSSCFFIGCLLGGLALSTLGDSSSLGRKKLLFLSCFAMSITALAT---IFANNIWIYSTIRFVAGFFRAPIMTSVI  194 (521)
Q Consensus       118 ~~~~~~s~~~lg~~i~~~~~g~l~dr~~~Grr~~l~~~~~~~~~~~~~~---~~~~~~~~l~~~r~l~G~~~g~~~~~~~  194 (521)
                        |++.+.+.+++.+++++.|++.||  +|||+++..++++++++++++   .++++++.++++|+++|+|.|...+...
T Consensus        64 --gl~~~~~~~g~~i~~~~~g~l~dr--~G~r~~l~~g~~~~~~~~~l~~~~~~a~~~~~ll~~r~l~G~g~g~~~~~~~  139 (438)
T PRK10133         64 --GLIQSAFYFGYFIIPIPAGILMKK--LSYKAGIITGLFLYALGAALFWPAAEIMNYTLFLVGLFIIAAGLGCLETAAN  139 (438)
T ss_pred             --HHHHHHHHHHHHHHHHHHHHHHHH--hCcHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhhHH
Confidence              999999999999999999999999  999999999999999999885   5689999999999999999999999999


Q ss_pred             hheeeeecCcchhHHHHHHHHHHHHHHHHHHHHHH-hh-cC-------------------------CchhHHHHHHH-HH
Q 039541          195 VLLSEMVSKRWRGQVVIIGFTFFSFGLVSLPAVAY-LS-RG-------------------------SSWKMLYVWTS-IP  246 (521)
Q Consensus       195 ~~i~~~~~~~~rg~~~~~~~~~~~~G~~i~~~i~~-~~-~~-------------------------~~wr~~f~~~~-~~  246 (521)
                      .++.|+.|+++|++.+++.+..+.+|..+++.++. +. ..                         .+||++|+... +.
T Consensus       140 ~~v~~~~~~~~~~~~~s~~~~~~~~G~~~g~~~g~~l~~~~~~~~~~~~~~~l~~~~~~~w~~~~~~~w~~~f~~~~~v~  219 (438)
T PRK10133        140 PFVTVLGPESSGHFRLNLAQTFNSFGAIIAVVFGQSLILSNVPHQSQDVLDKMTPEQLSAYKHSLVLSVQTPYMIIVAIV  219 (438)
T ss_pred             HHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccchhhhhccChhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999877777777899999999999999998843 22 00                         25666675433 33


Q ss_pred             HHHHHhhhceeeecchhHHHhcCCHHHHHHHHHHHhhhcCCCCCCCccccccCCCCCccccCCCcccccccHHHHhccHH
Q 039541          247 SIVCCIIIYPFISESPRWLFIHGHEAEAMAVLKRLASRSNYQSDYGLESCCLSNMPPKAKNVIPKLDLYSSLKDLFNRKW  326 (521)
Q Consensus       247 ~~~~~~~~~~~~~esp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~  326 (521)
                      .++..++....+||.+.     ++.++                                   ++..+...++++++++|.
T Consensus       220 ~~~~~~~~~~~~p~~~~-----~~~~~-----------------------------------~~~~~~~~~~~~ll~~~~  259 (438)
T PRK10133        220 LLVALLIMLTKFPALQS-----DNHSD-----------------------------------AKQGSFSASLSRLARIRH  259 (438)
T ss_pred             HHHHHHHHHhcCCCCCc-----ccccc-----------------------------------ccccchhhhHHHHHhCch
Confidence            33333232333444211     00000                                   000001124567888888


Q ss_pred             HHHHHHHHHHHHHHHHHHH-HhHHhhcc-CCCccHHHH---HHHHHHHhHhHHHHHHHHHhhcCCchHHHHHHHHHHHHH
Q 039541          327 ALRRLLTIMALAFGIGVVY-FGLLLGVG-NLSFNIYLS---LAFNGLLDIPAYLLTFILIERWSRKSSILTFCILSGTCS  401 (521)
Q Consensus       327 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~-~~~~~~~~~---~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~i~~  401 (521)
                      ++...+..++........+ |..++..+ ..+.++...   .....++.++|+++++++.||+++|+++..+..+..+.+
T Consensus       260 ~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~g~s~~~ag~~~~~~~~~~~vG~~~~g~l~~r~g~~~~l~~~~~~~~~~~  339 (438)
T PRK10133        260 WRWAVLAQFCYVGAQTACWSYLIRYAVEEIPGMTAGFAANYLTGTMVCFFIGRFTGTWLISRFAPHKVLAAYALIAMALC  339 (438)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHH
Confidence            7665544434333333222 33334333 456655433   355667888999999999999999999888877776666


Q ss_pred             HHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHhhccccCchhhhhhhHHHHHhhhhhhhHHHHHHHh
Q 039541          402 AICVAIGDEQEVLQIGLELASFFSACVAFNVLLVFGTELFTTCVRNSTTSLVRQAVNLGAAFSPVLISA  470 (521)
Q Consensus       402 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~p~~~~~  470 (521)
                      ++..+.+..   .......+.+++.+..+|..++...+..|++ .+.+.++.. ...+|+.++|.+.|.
T Consensus       340 ~~~~~~~~~---~~~~~~~l~glg~~~i~P~~~s~a~~~~~~~-~~~as~l~~-~~~~g~~~~~~i~G~  403 (438)
T PRK10133        340 LISAFAGGH---VGLIALTLCSAFMSIQYPTIFSLGIKNLGQD-TKYGSSFIV-MTIIGGGIVTPVMGF  403 (438)
T ss_pred             HHHHHcCCh---HHHHHHHHHHHHHHHHHHHHHHHHHcccchh-hccchhHHh-HHhccchHHHHHHHH
Confidence            555544332   3345677889999999999999999998875 477888776 455778888888886

>TIGR00899 2A0120 sugar efflux transporter

Probab=99.97  E-value=4e-29  Score=244.50  Aligned_cols=344  Identities=15%  Similarity=0.145  Sum_probs=246.3

Q ss_pred             Ccc-eeeecceeeCCccccchhhHHHHHHHHHHhhhhhhhccccCCCCchHHHHH-HHHHHHHHHHHHhccccHHHHHHH
Q 039541          101 DTT-IISDWSLECAGSSILSGLPSSCFFIGCLLGGLALSTLGDSSSLGRKKLLFL-SCFAMSITALATIFANNIWIYSTI  178 (521)
Q Consensus       101 ~~~-i~~~~~~~~~~~~~~~~~~~s~~~lg~~i~~~~~g~l~dr~~~Grr~~l~~-~~~~~~~~~~~~~~~~~~~~l~~~  178 (521)
                      +|. +++++|.+..+.    |++.+++.++..+.+++.|+++||  +||||.++. +.++..++.++++++++++.+++.
T Consensus        20 l~~~l~~~~g~s~~~~----g~~~~~~~~~~~~~~~~~g~l~Dr--~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~   93 (375)
T TIGR00899        20 LSLFLSEEVRARPAMI----GLFYTGSAIVGIAVSQLLATRSDY--QGDRKGLILFCCLLAALACLLFAWNRNYFLLLVL   93 (375)
T ss_pred             HHHHHHcccCCCHHHH----HHHHHHHHHHHHHHHHHHHHHHhc--cCCchHHHHHHHHHHHHHHHHHHhcchHHHHHHH
Confidence            443 678999998666    999999999999999999999999  999887654 666667788889999999999999


Q ss_pred             HHHhhccchhhHhhhhhheeeeecCcchhHH--HHHHHHHHHHHHHHHHHH-HHhhcCCchhHHHHHHHHHHHHHHhhhc
Q 039541          179 RFVAGFFRAPIMTSVIVLLSEMVSKRWRGQV--VIIGFTFFSFGLVSLPAV-AYLSRGSSWKMLYVWTSIPSIVCCIIIY  255 (521)
Q Consensus       179 r~l~G~~~g~~~~~~~~~i~~~~~~~~rg~~--~~~~~~~~~~G~~i~~~i-~~~~~~~~wr~~f~~~~~~~~~~~~~~~  255 (521)
                      |++.|.+.+...|...+++.|+.|+++|++.  .+....+.++|.+++|.+ +.+.+..+||+.|++.+++.++..++.+
T Consensus        94 ~~~~g~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ig~~~~~~l~~~~~~~~~f~~~~~~~~~~~~~~~  173 (375)
T TIGR00899        94 GVLLSSFASTANPQLFALAREHADRTGREAVMFSSVMRAQISLAWVIGPPLAFWLALGFGFTVMFLTAALAFVLCGVLVW  173 (375)
T ss_pred             HHHHHhhhhhhHHHHHHHHHHHhhhcchhhHHHHHHHHHHHhHHHHHhhhHHHHHHHhcccHHHHHHHHHHHHHHHHHHH
Confidence            9999988888888888889999887777755  578888889999999988 6676778999999999988777775666


Q ss_pred             eeeecchhHHHhcCCHHHHHHHHHHHhhhcCCCCCCCccccccCCCCCccccCCCcccccccHHHHhccHHHHHHHHHHH
Q 039541          256 PFISESPRWLFIHGHEAEAMAVLKRLASRSNYQSDYGLESCCLSNMPPKAKNVIPKLDLYSSLKDLFNRKWALRRLLTIM  335 (521)
Q Consensus       256 ~~~~esp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~  335 (521)
                      +++||+|+..     .++           .                       .     ..+.++.++++.++......+
T Consensus       174 ~~~~~~~~~~-----~~~-----------~-----------------------~-----~~~~~~~~~~~~~~~~~~~~~  209 (375)
T TIGR00899       174 LFLPSYPRGA-----PGA-----------L-----------------------T-----RLEVRGLLASRDTRLLFVACT  209 (375)
T ss_pred             HhCCCcccCc-----ccc-----------c-----------------------C-----cchhhhhhcCcchHHHHHHHH
Confidence            6678865310     000           0                       0     012233455665544433333


Q ss_pred             HHHHHHHHHHHhHHhhc-cCCCccHHHHHH---HHHHHhHhHHHHHHHHHhhcCCchHHHHHHHHHHHHHHHHHhcCCch
Q 039541          336 ALAFGIGVVYFGLLLGV-GNLSFNIYLSLA---FNGLLDIPAYLLTFILIERWSRKSSILTFCILSGTCSAICVAIGDEQ  411 (521)
Q Consensus       336 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~---~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~i~~~~~~~~~~~~  411 (521)
                      ..+..........|.++ ++.+.+......   ...+..+++.++.+++.||++||+.+.++..+..+....+....+  
T Consensus       210 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~--  287 (375)
T TIGR00899       210 LMWGCNILYIINMPLLIIHELGLPDKLAGLMMGTAAGLEIPFMLLAGYLIKRFGKRRLMLLAALAGVAFYTGLAADNS--  287 (375)
T ss_pred             HHHHHHHHHHhhhHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHH--
Confidence            33333333333334433 344554433332   233455667789999999999999888777665555444333222  


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhccccCchhhhhhhHHHHHhhhhhhhHHHHHHHh--hccchhHHHHHHHHHHHHH
Q 039541          412 EVLQIGLELASFFSACVAFNVLLVFGTELFTTCVRNSTTSLVRQAVNLGAAFSPVLISA--GRQNEFLSFGVFGLVVFCF  489 (521)
Q Consensus       412 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~p~~~~~--~~~~~~~~~~~~~~~~~~~  489 (521)
                      .+...+..++.+++.+...+....+..|..|++ ++++.++.+...++|..++|.+.+.  ...++...+.+.+++.+++
T Consensus       288 ~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~g~~~g~~~~g~~~~~~g~~~~~~~~~~~~~~~  366 (375)
T TIGR00899       288 LWALLMLQLLNAIFIGILAGIGMLYFQDLMPGR-AGAATTLYTNTGRVGWIIAGSVGGILAERWSYHAVYWFAIVMLIVA  366 (375)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcch-hhHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHH
Confidence            244455566677777777788888889988875 5799999999999999999999986  3345677777777777777


Q ss_pred             hHhhhccc
Q 039541          490 GFFVVFLP  497 (521)
Q Consensus       490 ~~~~~~~~  497 (521)
                      .+....++
T Consensus       367 ~~~~~~~~  374 (375)
T TIGR00899       367 LFCLLLIK  374 (375)
T ss_pred             HHHHheec
Confidence            76665554

This family of proteins is an efflux system for lactose, glucose, aromatic glucosides and galactosides, cellobiose, maltose, a-methyl glucoside and other sugar compounds. They are found in both gram-negative and gram-postitive bacteria.

>KOG2532 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]

Probab=99.97  E-value=9.9e-29  Score=241.00  Aligned_cols=360  Identities=15%  Similarity=0.167  Sum_probs=265.1

Q ss_pred             eeecceeeCCccccchhhHHHHHHHHHHhhhhhhhccccCCCCchHHHHHHHHHHHHHHHHHhccc--cHHHHHHHHHHh
Q 039541          105 ISDWSLECAGSSILSGLPSSCFFIGCLLGGLALSTLGDSSSLGRKKLLFLSCFAMSITALATIFAN--NIWIYSTIRFVA  182 (521)
Q Consensus       105 ~~~~~~~~~~~~~~~~~~~s~~~lg~~i~~~~~g~l~dr~~~Grr~~l~~~~~~~~~~~~~~~~~~--~~~~l~~~r~l~  182 (521)
                      ..+++++.+|.    |++.+.++.|+++++++.|+++||  +|-|+++..+.++.++++++..++.  +++.+++.|++|
T Consensus        65 ~~~~~ws~~~k----~~i~ss~~~G~i~~~iP~g~l~~k--~G~r~v~~~~~~~sa~~t~l~P~aa~~~~~~~~~~R~lq  138 (466)
T KOG2532|consen   65 AGEYDWSSTEK----GLIFSSFFWGYILGQIPGGYLADK--FGARRVFFISGLISALLTLLTPLAASIGFYLLLVLRFLQ  138 (466)
T ss_pred             CceecCCHHHH----HHHHHHHHHHHHHHHcCcHHHHHH--cCchHHHHHHHHHHHHHHHHHHHHHHhcchhhHHHHHHh
Confidence            67899999887    999999999999999999999999  9999999999999999999998874  566889999999


Q ss_pred             hccchhhHhhhhhheeeeecCcchhHHHHHHHHHHHHHHHHHHHH-HHhhcC-CchhHHHHHHHHHHHHHHhhhceeeec
Q 039541          183 GFFRAPIMTSVIVLLSEMVSKRWRGQVVIIGFTFFSFGLVSLPAV-AYLSRG-SSWKMLYVWTSIPSIVCCIIIYPFISE  260 (521)
Q Consensus       183 G~~~g~~~~~~~~~i~~~~~~~~rg~~~~~~~~~~~~G~~i~~~i-~~~~~~-~~wr~~f~~~~~~~~~~~~~~~~~~~e  260 (521)
                      |++.|..+|+...+.+.|.|+++|++..++...+..+|.+++..+ |++.+. +||+++|++.++.+++..++.+++..|
T Consensus       139 Gl~~g~~~pa~~~i~~~W~P~~Ers~~~ail~~g~q~g~v~~mp~sg~lc~s~~GW~sifY~~g~~g~i~~~~w~~~~~d  218 (466)
T KOG2532|consen  139 GLGQGVLFPAIGSILAKWAPPNERSTFIAILTAGSQLGTIITMPVSGLLCESSLGWPSIFYVFGIVGLIWFILWFLFYSD  218 (466)
T ss_pred             HHHHhHHHhhhhceeeeECCHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhccCCCCchHHHHHHHHHHHHHHHHHHHhcC
Confidence            999999999999999999999999999999999999999998766 888887 999999999999999999666677788


Q ss_pred             chhHHHhcCCHHHHHHHHHHHhhhcCCCCCCCccccccCCCCCccccCCCcccccccHHHHhccHHHHHHHHHHHHHHHH
Q 039541          261 SPRWLFIHGHEAEAMAVLKRLASRSNYQSDYGLESCCLSNMPPKAKNVIPKLDLYSSLKDLFNRKWALRRLLTIMALAFG  340 (521)
Q Consensus       261 sp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~  340 (521)
                      +|...  +.-.+   ++++++.+ ...+                   +..+.+.+.+++++++++.+|...+..+....+
T Consensus       219 ~P~~h--~~is~---~El~~I~~-~k~~-------------------~~~~~~~~vP~~~i~ts~~vwai~~~~f~~~~~  273 (466)
T KOG2532|consen  219 SPSKH--PNISE---KELKYIEK-GKSE-------------------AHVKKKPPVPYKAILTSPPVWAIWISAFGGNWG  273 (466)
T ss_pred             CcccC--CCCCH---HHHHHHHh-cccc-------------------cccCCCCCCCHHHHHcCHHHHHHHHHHHHHHHH
Confidence            87531  11111   12223311 1110                   000011345899999999988877777666666


Q ss_pred             HHHHHHhHHhhcc-CCCccHHHHH---HHHHHHhHhHHHHHHHHHhhcCC---------chHHHHHHHHHHHHHHHHHhc
Q 039541          341 IGVVYFGLLLGVG-NLSFNIYLSL---AFNGLLDIPAYLLTFILIERWSR---------KSSILTFCILSGTCSAICVAI  407 (521)
Q Consensus       341 ~~~~~~~~~~~~~-~~~~~~~~~~---~~~~~~~~~~~~~~g~l~dr~g~---------~~~~~~~~~~~~i~~~~~~~~  407 (521)
                      ......+.|.+++ .++.+....+   .+..+...+..+++|.++||+.+         |..-.++....+++++.+.+.
T Consensus       274 ~~~l~~y~PtY~~~VL~f~v~~~G~~salP~l~~~~~k~~~g~lsD~l~~~~ls~t~~rkifn~i~~~~~ai~l~~l~~~  353 (466)
T KOG2532|consen  274 FYLLLTYLPTYLKEVLGFDVRETGFLSALPFLAMAIVKFVAGQLSDRLTFRILSETTVRKIFNTIAFGGPAVFLLVLAFT  353 (466)
T ss_pred             HHHHHHHhhHHHHHHhCCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhccCchHhHHHHHHhHHHHHHHHHHHeeeec
Confidence            6555545555554 4666654444   34456777888999999998755         334456667777777777776


Q ss_pred             CCchHHHHHHHHHHHHHHHHHHHHHHHHhhccccCchhhhhhhHHHHHhhhhhhhHHHHHHHhhc-----cchhHHHHHH
Q 039541          408 GDEQEVLQIGLELASFFSACVAFNVLLVFGTELFTTCVRNSTTSLVRQAVNLGAAFSPVLISAGR-----QNEFLSFGVF  482 (521)
Q Consensus       408 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~p~~~~~~~-----~~~~~~~~~~  482 (521)
                      +....+...+++.+.....+...+-.+.-..+..|+ +-+..+|+.+....+.++++|.+.+...     ..+...|++.
T Consensus       354 ~~~~~~~a~~~l~~~~~~~g~~~~Gf~~~~~~~apq-~a~~l~g~~~~~~~~~~~~~P~~vg~~~~~~t~~eW~~VF~i~  432 (466)
T KOG2532|consen  354 SDEHRLLAVILLTIAIGLSGFNISGFYKNHQDIAPQ-HAGFVMGIINFVGALAGFIAPLLVGIIVTDNTREEWRIVFLIA  432 (466)
T ss_pred             CCCcchHHHHHHHHHHHHcccchhhhHhhhhhccch-HHHHHHHHHHHHHHHHHHHHHHheeeEeCCCCHHHHHHHHHHH
Confidence            654332333333332222233333333333333554 5599999999999999999999998632     2466778888


Q ss_pred             HHHHHHHhHhhhcc
Q 039541          483 GLVVFCFGFFVVFL  496 (521)
Q Consensus       483 ~~~~~~~~~~~~~~  496 (521)
                      +++.+++.+.+.+.
T Consensus       433 a~i~~~~~i~f~~f  446 (466)
T KOG2532|consen  433 AGILIVGNIIFLFF  446 (466)
T ss_pred             HHHHHHhchheeEe
Confidence            88888777665554

>PRK09874 drug efflux system protein MdtG; Provisional

Probab=99.97  E-value=4.7e-29  Score=246.89  Aligned_cols=348  Identities=16%  Similarity=0.101  Sum_probs=253.0

Q ss_pred             CcceeeecceeeCCc-cccchhhHHHHHHHHHHhhhhhhhccccCCCCchHHHHHHHHHHHHHHHHHhccccHHHHHHHH
Q 039541          101 DTTIISDWSLECAGS-SILSGLPSSCFFIGCLLGGLALSTLGDSSSLGRKKLLFLSCFAMSITALATIFANNIWIYSTIR  179 (521)
Q Consensus       101 ~~~i~~~~~~~~~~~-~~~~~~~~s~~~lg~~i~~~~~g~l~dr~~~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r  179 (521)
                      +|.+.+++|++..+. ..+.|++.+++.++..++++++|+++||  +|||++++.+.++.+++.++.+++++++.+++.|
T Consensus        37 l~~~~~~~g~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr--~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  114 (408)
T PRK09874         37 LPLYVEQLGVTGHSALNMWSGLVFSITFLFSAIASPFWGGLADR--KGRKIMLLRSALGMGIVMVLMGLAQNIWQFLILR  114 (408)
T ss_pred             HHHHHHHhCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhh--hCcHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence            788888999886553 1234889999999999999999999999  9999999999999999999999999999999999


Q ss_pred             HHhhccchhhHhhhhhheeeeecCcchhHHHHHHHHHHHHHHHHHHHH-HHhhcCCchhHHHHHHHHHHHHHHhhhceee
Q 039541          180 FVAGFFRAPIMTSVIVLLSEMVSKRWRGQVVIIGFTFFSFGLVSLPAV-AYLSRGSSWKMLYVWTSIPSIVCCIIIYPFI  258 (521)
Q Consensus       180 ~l~G~~~g~~~~~~~~~i~~~~~~~~rg~~~~~~~~~~~~G~~i~~~i-~~~~~~~~wr~~f~~~~~~~~~~~~~~~~~~  258 (521)
                      ++.|++.+ ..+....++.|++|+++|++++++...+..+|.+++|.+ +.+.+..+||+.|++.+++.++..+..++++
T Consensus       115 ~~~g~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  193 (408)
T PRK09874        115 ALLGLLGG-FVPNANALIATQVPRNKSGWALGTLSTGGVSGALLGPLAGGLLADSYGLRPVFFITASVLFLCFLVTLFCI  193 (408)
T ss_pred             HHHHHhhh-hHHhHHHHHHHhcCHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHh
Confidence            99999865 567777888999999999999999999999999999988 6666778999999999888777765556666


Q ss_pred             ecchhHHHhcCCHHHHHHHHHHHhhhcCCCCCCCccccccCCCCCccccCCCcccccccHHHHhccHHHHHHHHHH-HHH
Q 039541          259 SESPRWLFIHGHEAEAMAVLKRLASRSNYQSDYGLESCCLSNMPPKAKNVIPKLDLYSSLKDLFNRKWALRRLLTI-MAL  337 (521)
Q Consensus       259 ~esp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~-~~~  337 (521)
                      ||+++..    +.++ +...                                     .+..+.+++++.+...... ...
T Consensus       194 ~~~~~~~----~~~~-~~~~-------------------------------------~~~~~~~~~~~~~~~~~~~~~~~  231 (408)
T PRK09874        194 RENFQPV----SKKE-MLHM-------------------------------------REVVTSLKNPKLVLSLFVTTLII  231 (408)
T ss_pred             ccCcccc----cchh-hhHH-------------------------------------HHHHHhCcCCchHHHHHHHHHHH
Confidence            6653210    0000 0000                                     0122344555443322222 222


Q ss_pred             HHHHHHHHHhHHhhccCCCcc----H---HHHHHHHHHHhHhHHHHHHHHHhhcCCchHHHHHHHHHHHHHHHHHhcCCc
Q 039541          338 AFGIGVVYFGLLLGVGNLSFN----I---YLSLAFNGLLDIPAYLLTFILIERWSRKSSILTFCILSGTCSAICVAIGDE  410 (521)
Q Consensus       338 ~~~~~~~~~~~~~~~~~~~~~----~---~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~i~~~~~~~~~~~  410 (521)
                      ...........+.+..+.+.+    .   .....+.+++.+++.+..|++.||++||+.+..+..+..+..+......+.
T Consensus       232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~  311 (408)
T PRK09874        232 QVATGSIAPILTLYVRELAGNVSNIAFISGMIASVPGVAALLSAPRLGKLGDRIGPEKILITALIFSVLLLIPMSFVQTP  311 (408)
T ss_pred             HHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHHHhccH
Confidence            222221111222222221111    1   112233456667788889999999999999888887777666655544322


Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHhhccccCchhhhhhhHHHHHhhhhhhhHHHHHHHhh--ccchhHHHHHHHHHHHH
Q 039541          411 QEVLQIGLELASFFSACVAFNVLLVFGTELFTTCVRNSTTSLVRQAVNLGAAFSPVLISAG--RQNEFLSFGVFGLVVFC  488 (521)
Q Consensus       411 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~p~~~~~~--~~~~~~~~~~~~~~~~~  488 (521)
                        +...+..++.+++.+...+...+...+..|++.+++.+++.+....+|..++|.+.|..  ..++...|.+.+++.++
T Consensus       312 --~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~~gp~~~G~l~~~~g~~~~f~~~~~~~l~  389 (408)
T PRK09874        312 --LQLGILRFLLGAADGALLPAVQTLLVYNSSNQIAGRIFSYNQSFRDIGNVTGPLMGAAISANYGFRAVFLVTAGVVLF  389 (408)
T ss_pred             --HHHHHHHHHHHhhhHhhHHHHHHHHHHhCCcccceeeehHHHHHHHHHHHhhHHHHHHHHhhcchhHHHHHHHHHHHH
Confidence              45556667778888888888888888999999999999999999999999999999863  34677788888877777


Q ss_pred             HhHhhhc
Q 039541          489 FGFFVVF  495 (521)
Q Consensus       489 ~~~~~~~  495 (521)
                      +.+..+.
T Consensus       390 ~~~~~~~  396 (408)
T PRK09874        390 NAVYSWN  396 (408)
T ss_pred             HHHHHHH
Confidence            6665543

>PRK11043 putative transporter; Provisional

Probab=99.97  E-value=1.5e-28  Score=242.35  Aligned_cols=319  Identities=13%  Similarity=0.096  Sum_probs=236.7

Q ss_pred             CcceeeecceeeCCccccchhhHHHHHHHHHHhhhhhhhccccCCCCchHHHHHHHHHHHHHHHHHhccccHHHHHHHHH
Q 039541          101 DTTIISDWSLECAGSSILSGLPSSCFFIGCLLGGLALSTLGDSSSLGRKKLLFLSCFAMSITALATIFANNIWIYSTIRF  180 (521)
Q Consensus       101 ~~~i~~~~~~~~~~~~~~~~~~~s~~~lg~~i~~~~~g~l~dr~~~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~  180 (521)
                      +|.+++++|.+.++.    +++.+++.++..++++++|+++||  +|||+++..+.++.+++.++++++++++.+++.|+
T Consensus        29 ~~~i~~~~~~s~~~~----g~~~s~~~~~~~~~~~~~g~l~dr--~g~r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~  102 (401)
T PRK11043         29 FKAIQADLQTSASAV----SASLSLFLAGFALGQLLWGPLSDR--YGRKPVLLAGLSLFALGSLGMLWVESAAQLLVLRF  102 (401)
T ss_pred             HHHHHHHHCCCHHHH----HHHHHHHHHHHHHHHHhhhhHHhh--cCCcHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHH
Confidence            788999999999776    999999999999999999999999  99999999999999999999999999999999999


Q ss_pred             HhhccchhhHhhhhhheeeeecCcchhHHHHHHHHHHHHHHHHHHHH-HHhhcCCchhHHHHHHHHHHHHHHhhhceeee
Q 039541          181 VAGFFRAPIMTSVIVLLSEMVSKRWRGQVVIIGFTFFSFGLVSLPAV-AYLSRGSSWKMLYVWTSIPSIVCCIIIYPFIS  259 (521)
Q Consensus       181 l~G~~~g~~~~~~~~~i~~~~~~~~rg~~~~~~~~~~~~G~~i~~~i-~~~~~~~~wr~~f~~~~~~~~~~~~~~~~~~~  259 (521)
                      ++|++.+...+...+++.|++|++++++..+.......+|..++|.+ +.+.+..+||+.|++.+++.++..++ .++++
T Consensus       103 l~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~~~~g~~~~~~~~~~~~~~~~~~-~~~~~  181 (401)
T PRK11043        103 VQAVGVCSAAVIWQALVIDRYPAQKANRVFATIMPLVALSPALAPLLGAWLLNHFGWQAIFATLFAITLLLILP-TLRLK  181 (401)
T ss_pred             HHHhhhHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHH-HHHcC
Confidence            99999988888888899999999999999999998899999999988 67777889999999988887777633 34445


Q ss_pred             cchhHHHhcCCHHHHHHHHHHHhhhcCCCCCCCccccccCCCCCccccCCCcccccccHHHHhccHHHHHHHHHHHHHHH
Q 039541          260 ESPRWLFIHGHEAEAMAVLKRLASRSNYQSDYGLESCCLSNMPPKAKNVIPKLDLYSSLKDLFNRKWALRRLLTIMALAF  339 (521)
Q Consensus       260 esp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~  339 (521)
                      |+++.    .+.++                                        .+.+++++++++.++...+.......
T Consensus       182 ~~~~~----~~~~~----------------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~  217 (401)
T PRK11043        182 PSKKA----RKQSQ----------------------------------------DALTFKQLLKSKTYLGNVLIFAACSA  217 (401)
T ss_pred             CCCCc----cccch----------------------------------------HHHHHHHHHcChhHHHHHHHHHHHHH
Confidence            43310    00000                                        01256677888876654443333322


Q ss_pred             HHHHHHHhHHhhccCCCccHHHHH---HHHHHHhHhHHHHHHHHHhhcCCchHHHHHHHHHHHHHHHH---HhcCCchHH
Q 039541          340 GIGVVYFGLLLGVGNLSFNIYLSL---AFNGLLDIPAYLLTFILIERWSRKSSILTFCILSGTCSAIC---VAIGDEQEV  413 (521)
Q Consensus       340 ~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~i~~~~~---~~~~~~~~~  413 (521)
                      .........|.+.++.+.+.....   ....++.++|.++.+++.||+++|+.........+++.+.+   ........+
T Consensus       218 ~~~~~~~~~p~~~~~~g~s~~~~g~~~~~~~~~~~~g~~~~~~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  297 (401)
T PRK11043        218 AFFAWLTGSPFILEQMGYSPADIGLSYVPQTIAFLVGGYGCRAALQKWGGEQLLPWLLVLFAVSVIAIWLASLLSHPSLV  297 (401)
T ss_pred             HHHHHHHHhHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHhccCcHH
Confidence            222223334555666666554333   33345677888889999999999887655544444433322   221222223


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhccccCchhhhhhhHHHHHhhhhhhhHHHHHHHhh
Q 039541          414 LQIGLELASFFSACVAFNVLLVFGTELFTTCVRNSTTSLVRQAVNLGAAFSPVLISAG  471 (521)
Q Consensus       414 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~p~~~~~~  471 (521)
                      ...+...+.+++.+..++.......+..|+ .++++.|+.+.....++..++.+.+..
T Consensus       298 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~~~g~~~~~~~~~~~~~~~~~g~l  354 (401)
T PRK11043        298 PLLIPFCVMAAANGAIYPIVVAQALRPFPQ-ATGKAAALQNTLQLGLCFLASLLVSAL  354 (401)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhhCcc-cChHHHHHHHHHHHHHHHHHHHHHHHc
Confidence            344455667777788888888877777764 689999999999888888888888753

>TIGR00897 2A0118 polyol permease family

Probab=99.97  E-value=1.1e-28  Score=242.69  Aligned_cols=349  Identities=12%  Similarity=0.010  Sum_probs=239.6

Q ss_pred             cceeeecceeeCCccccchhhHHHHHHHHHHhhhhhhhccccCCCCchHHHHHHHHHHHHHHHHHh---c-cccHHHHHH
Q 039541          102 TTIISDWSLECAGSSILSGLPSSCFFIGCLLGGLALSTLGDSSSLGRKKLLFLSCFAMSITALATI---F-ANNIWIYST  177 (521)
Q Consensus       102 ~~i~~~~~~~~~~~~~~~~~~~s~~~lg~~i~~~~~g~l~dr~~~Grr~~l~~~~~~~~~~~~~~~---~-~~~~~~l~~  177 (521)
                      +.+.+++|++.++.    |++.+.+.++..+++++.|+++||  +|||+++..+.++.+++.+++.   + .++++.+++
T Consensus        37 ~~~~~~~g~s~~~~----g~~~~~~~~~~~i~~~~~g~l~dr--~g~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  110 (402)
T TIGR00897        37 SPFLKALGLSPQQS----ASAFTLYGIAAAISAWISGVVAEI--IGPLKTMMIGLLLWCVGHAAFIVFGLGHANYPLILL  110 (402)
T ss_pred             HHHHHHhCCCHHHh----HHHHHHHHHHHHHHHHHHHHHHHH--cCcHHHHHHHHHHHHHHHHHHHHHhccCccHHHHHH
Confidence            44557899999777    999999999999999999999999  9999999999999998877653   3 358889999


Q ss_pred             HHHHhhccchhhHhhhhhheeeeecCcchhHHHHHHHHHHHHHH-HHHHHH-HHhhcCCchhHHHHHHHHHHHHHHhhhc
Q 039541          178 IRFVAGFFRAPIMTSVIVLLSEMVSKRWRGQVVIIGFTFFSFGL-VSLPAV-AYLSRGSSWKMLYVWTSIPSIVCCIIIY  255 (521)
Q Consensus       178 ~r~l~G~~~g~~~~~~~~~i~~~~~~~~rg~~~~~~~~~~~~G~-~i~~~i-~~~~~~~~wr~~f~~~~~~~~~~~~~~~  255 (521)
                      .|++.|++.+...+...+++.+++|+++|++++|+.+.+.++|. +++|.+ +.+.+..||+..++......++..++..
T Consensus       111 ~~~i~G~g~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~g~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~~  190 (402)
T TIGR00897       111 FYGIRGLGYPLFAYSFLVWVVYNTKQDNLSSAVGWFWAVYSIGIGVFGSYYSSYAIPAFGEMNTLWSALAFVLTGGVIAL  190 (402)
T ss_pred             HHHHHHcchHHHHhHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHHH
Confidence            99999999988888888889999999999999999999999997 578888 5777778876665554443333332333


Q ss_pred             eeeecchhHHHhcCCHHHHHHHHHHHhhhcCCCCCCCccccccCCCCCccccCCCcccccccHHHHhccHHHHHHHHHHH
Q 039541          256 PFISESPRWLFIHGHEAEAMAVLKRLASRSNYQSDYGLESCCLSNMPPKAKNVIPKLDLYSSLKDLFNRKWALRRLLTIM  335 (521)
Q Consensus       256 ~~~~esp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~  335 (521)
                      ++.++.++.. .+++.+                                     +..+....++.++++|.++...+..+
T Consensus       191 ~~~~~~~~~~-~~~~~~-------------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~  232 (402)
T TIGR00897       191 FSNKDIFTPQ-HMQTRE-------------------------------------KFSELGKAATILFTNPNVLLGGMVRI  232 (402)
T ss_pred             hccCCCCCcc-cccCCc-------------------------------------chhhHHHHHHHHHcChhHHHHHHHHH
Confidence            3444432100 000000                                     00000124567888888766555444


Q ss_pred             HHHHHHHHHHHhHHhhccCCCccHHHHH---HHHHHHhHhHHHHHHHHHhhcCCchHHH-HHHHHHHHHHHHHHhcC---
Q 039541          336 ALAFGIGVVYFGLLLGVGNLSFNIYLSL---AFNGLLDIPAYLLTFILIERWSRKSSIL-TFCILSGTCSAICVAIG---  408 (521)
Q Consensus       336 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~g~l~dr~g~~~~~~-~~~~~~~i~~~~~~~~~---  408 (521)
                      ..........+..|.+.++.+.+.....   ....++.+++.++.|+++||++||+... .+....+++.+.+...+   
T Consensus       233 ~~~~~~~~~~~~~p~~~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~~~~~~~~~~~~l~~~~~~~~l~~~~~~~  312 (402)
T TIGR00897       233 INTIGLFGFAVFLPMFVAELGFSTSEWLQIWGTFFFTNIVFNVIFGIVGDKLGWMNTVRWFGGVGCGIFTLALYYIPQHF  312 (402)
T ss_pred             HHHHHHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHHHcc
Confidence            4444443344455666677776554332   3455778899999999999999888654 23333333332322211   


Q ss_pred             CchHHHHHHHHHHHHHHHHHHHHHHHHhhccccCchhhhhhhHHHHHhhhhhhhHHHHHHHh--hccchhHHHHHHHHHH
Q 039541          409 DEQEVLQIGLELASFFSACVAFNVLLVFGTELFTTCVRNSTTSLVRQAVNLGAAFSPVLISA--GRQNEFLSFGVFGLVV  486 (521)
Q Consensus       409 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~p~~~~~--~~~~~~~~~~~~~~~~  486 (521)
                      ..+.+...+..++.+++.+...+. .....|..| ++|+++.|+.+....+|+.++|.+.+.  ...++...+.+.+++.
T Consensus       313 ~~~~~~~~~~~~~~G~~~~~~~~~-~~~~~~~~~-~~~g~~~g~~~~~~~lg~~~gp~i~g~l~~~~g~~~~~~~~a~~~  390 (402)
T TIGR00897       313 GHSFAVALIIAIALGIFLAGYVPL-AAVFPTLAP-KHKGAAMSVLNLSAGLSAFLAPAIAVLFIGFFGAIGVVWIFAALY  390 (402)
T ss_pred             CCcHHHHHHHHHHHHHHHHHHHHH-HHHHHhhCc-chhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHH
Confidence            112234445566666666654443 445566655 579999999999999999999999986  3345667777777777


Q ss_pred             HHHhHhhhcc
Q 039541          487 FCFGFFVVFL  496 (521)
Q Consensus       487 ~~~~~~~~~~  496 (521)
                      +++.+...++
T Consensus       391 ~i~~~~~~~~  400 (402)
T TIGR00897       391 VVSAFLTAFI  400 (402)
T ss_pred             HHHHHHHHHh
Confidence            7766665554

This family of proteins includes the ribitol and D-arabinitol transporters from Klebsiella pneumoniae and the alpha-ketoglutarate permease from Bacillus subtilis.

>PRK11102 bicyclomycin/multidrug efflux system; Provisional

Probab=99.97  E-value=2.6e-29  Score=245.95  Aligned_cols=351  Identities=15%  Similarity=0.145  Sum_probs=243.7

Q ss_pred             CCCcceeeecceeeCCccccchhhHHHHHHHHHHhhhhhhhccccCCCCchHHHHHHHHHHHHHHHHHhccccHHHHHHH
Q 039541           99 PSDTTIISDWSLECAGSSILSGLPSSCFFIGCLLGGLALSTLGDSSSLGRKKLLFLSCFAMSITALATIFANNIWIYSTI  178 (521)
Q Consensus        99 ~~~~~i~~~~~~~~~~~~~~~~~~~s~~~lg~~i~~~~~g~l~dr~~~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~  178 (521)
                      |.+|.+.+++|++.++.    +++.+++.++..++++++|+++||  +|||+++..+.++.+++.+++.++++++.+++.
T Consensus        12 p~~~~~~~~~~~s~~~~----~~~~~~~~~~~~~~~~~~g~l~d~--~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~   85 (377)
T PRK11102         12 PALPVIAADFGVSAGSV----QMTLSAYILGFAIGQLFYGPMADS--FGRKPVILGGTLVFALAAVACALAQTIDQLIYM   85 (377)
T ss_pred             ccHHHHHHHhCCCHHHH----HHHHHHHHHHHHHHHHhhchHHhh--cCChHHHHHHHHHHHHHHHHHHHHccHHHHHHH
Confidence            44899999999999777    999999999999999999999999  999999999999999999999999999999999


Q ss_pred             HHHhhccchhhHhhhhhheeeeecCcchhHHHHHHHHHHHHHHHHHHHH-HHhhcCCchhHHHHHHHHHHHHHHhhhcee
Q 039541          179 RFVAGFFRAPIMTSVIVLLSEMVSKRWRGQVVIIGFTFFSFGLVSLPAV-AYLSRGSSWKMLYVWTSIPSIVCCIIIYPF  257 (521)
Q Consensus       179 r~l~G~~~g~~~~~~~~~i~~~~~~~~rg~~~~~~~~~~~~G~~i~~~i-~~~~~~~~wr~~f~~~~~~~~~~~~~~~~~  257 (521)
                      |++.|++.+...+...+++.|++|+++|++++++.+.+..+|..++|.+ +.+.+..+||+.|++.+++.++..++..++
T Consensus        86 ~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  165 (377)
T PRK11102         86 RFLHGLAAAAASVVINALMRDMFPKEEFSRMMSFVTLVMTIAPLLAPIIGGWLLVWFSWHAIFWVLALAAILAAALVFFF  165 (377)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChHHHHHHHHHHHHHHHHHHHHh
Confidence            9999999999999999999999999999999999999999999999998 567777899999999888887776566666


Q ss_pred             eecchhHHHhcCCHHHHHHHHHHHhhhcCCCCCCCccccccCCCCCccccCCCcccccccHHHHhccHHHHHHHHHHHHH
Q 039541          258 ISESPRWLFIHGHEAEAMAVLKRLASRSNYQSDYGLESCCLSNMPPKAKNVIPKLDLYSSLKDLFNRKWALRRLLTIMAL  337 (521)
Q Consensus       258 ~~esp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~  337 (521)
                      +||+++..    +.++                                   .+.++...+++++++++..+...+...+.
T Consensus       166 ~~~~~~~~----~~~~-----------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  206 (377)
T PRK11102        166 IPETLPKE----RRQP-----------------------------------FHLRTTIRNFASLFRHKRVLGYMLASGFS  206 (377)
T ss_pred             CCccCccc----ccCC-----------------------------------CChHHHHHHHHHHHcChHHHHHHHHHHHH
Confidence            77754210    0000                                   00000012456778887765544443333


Q ss_pred             HHHHHHHHHhHH-hhccCCCccHH---HHHHHHHHHhHhHHHHHHHHHhhcCCchHHHHHHHHHHHHHHHHHhcC--Cch
Q 039541          338 AFGIGVVYFGLL-LGVGNLSFNIY---LSLAFNGLLDIPAYLLTFILIERWSRKSSILTFCILSGTCSAICVAIG--DEQ  411 (521)
Q Consensus       338 ~~~~~~~~~~~~-~~~~~~~~~~~---~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~i~~~~~~~~~--~~~  411 (521)
                      ...........| ++.+..+.+..   .......++.+++.++.+++.||+|+|+.+..+..+..+..+.+....  ...
T Consensus       207 ~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~  286 (377)
T PRK11102        207 FAGMFSFLTAGPFVYIELNGVSPQNFGYYFALNIVFLFVMTIINSRFVRRVGALNMLRFGLWIQFIMGIWLVVSALLDLG  286 (377)
T ss_pred             HHHHHHHHHcCHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence            322222222222 33343454443   333455677788999999999999999988887765444333222211  111


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhccccCchhhhhhhHHHHHhh-hhhhhHHHHHHHhhccchhHHHHHHHHHHHHHh
Q 039541          412 EVLQIGLELASFFSACVAFNVLLVFGTELFTTCVRNSTTSLVRQAV-NLGAAFSPVLISAGRQNEFLSFGVFGLVVFCFG  490 (521)
Q Consensus       412 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~-~~g~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~  490 (521)
                      .+...+...+...+.+...+.......|..| +.++++.++.+... .+|..+++++.+....+....+...+++.+++.
T Consensus       287 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~  365 (377)
T PRK11102        287 FWALVVGVAAFVGCVSMISSNAMAVILDEFP-HMAGTASSLAGTLRFGIGAIVGALLSLAPFTSAWPMVWSMAFCSILSI  365 (377)
T ss_pred             HHHHHHHHHHHHHHHHHhhHHHHHHHhcccc-ccchHHHHHHHHHHHHHHHHHHHHHHhccCCChHHHHHHHHHHHHHHH
Confidence            1223333333344444445555566777776 67899999887764 466777777765443333333344444444443


Q ss_pred             Hhhhc
Q 039541          491 FFVVF  495 (521)
Q Consensus       491 ~~~~~  495 (521)
                      +..++
T Consensus       366 ~~~~~  370 (377)
T PRK11102        366 LFYLY  370 (377)
T ss_pred             HHHHH
Confidence            33333

>PRK11652 emrD multidrug resistance protein D; Provisional

Probab=99.97  E-value=1.1e-28  Score=242.59  Aligned_cols=322  Identities=13%  Similarity=0.099  Sum_probs=234.8

Q ss_pred             CcceeeecceeeCCccccchhhHHHHHHHHHHhhhhhhhccccCCCCchHHHHHHHHHHHHHHHHHhccccHHHHHHHHH
Q 039541          101 DTTIISDWSLECAGSSILSGLPSSCFFIGCLLGGLALSTLGDSSSLGRKKLLFLSCFAMSITALATIFANNIWIYSTIRF  180 (521)
Q Consensus       101 ~~~i~~~~~~~~~~~~~~~~~~~s~~~lg~~i~~~~~g~l~dr~~~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~  180 (521)
                      +|.+.+++|++.++.    +++.+.+.++..++++++|+++||  +|||++++++.++..++.+++.++++++.+++.|+
T Consensus        31 ~~~i~~~~~~s~~~~----~~~~~~~~~~~~~~~~~~G~l~Dr--~grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~  104 (394)
T PRK11652         31 IADMARDLNVREGAV----QAVMAAYLLTYGLSQLFYGPLSDR--VGRRPVILVGMSIFILGTLVALFAHSLTVLIAASA  104 (394)
T ss_pred             HHHHHHHhCCCHHHH----HHHHHHHHHHHHHHHHhhhhHHHh--cCChHHHHHHHHHHHHHHHHHHHHccHHHHHHHHH
Confidence            789999999999776    999999999999999999999999  99999999999999999999999999999999999


Q ss_pred             HhhccchhhHhhhhhheeeeecCcchhHHHHHHHHHHHHHHHHHHHH-HHhhcCCchhHHHHHHHHHHHHHHhhhceeee
Q 039541          181 VAGFFRAPIMTSVIVLLSEMVSKRWRGQVVIIGFTFFSFGLVSLPAV-AYLSRGSSWKMLYVWTSIPSIVCCIIIYPFIS  259 (521)
Q Consensus       181 l~G~~~g~~~~~~~~~i~~~~~~~~rg~~~~~~~~~~~~G~~i~~~i-~~~~~~~~wr~~f~~~~~~~~~~~~~~~~~~~  259 (521)
                      +.|++.+...+....+..|.+++++|+++.++.+.+..+|..++|.+ +.+.+..+||+.|++.++..++..++..+++|
T Consensus       105 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~  184 (394)
T PRK11652        105 IQGLGTGVGGVMARTLPRDLYEGTQLRHANSLLNMGILVSPLLAPLIGGLLTTLFGWRACYLFLLLLGAGVTFSMARWMP  184 (394)
T ss_pred             HHHhhhhHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHHHHhCC
Confidence            99999998888888899999999999999999999999999999998 56667789999999988877766545556677


Q ss_pred             cchhHHHhcCCHHHHHHHHHHHhhhcCCCCCCCccccccCCCCCccccCCCcccccccHHHHhccHHHHHHHHHHHHHHH
Q 039541          260 ESPRWLFIHGHEAEAMAVLKRLASRSNYQSDYGLESCCLSNMPPKAKNVIPKLDLYSSLKDLFNRKWALRRLLTIMALAF  339 (521)
Q Consensus       260 esp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~  339 (521)
                      |+++..   ++.++                                        ....++.++++|.++...+..+....
T Consensus       185 ~~~~~~---~~~~~----------------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~  221 (394)
T PRK11652        185 ETRPAD---ARRTR----------------------------------------VLASYRTLLSNRRFNCYLLMLIGTLA  221 (394)
T ss_pred             ccCccc---cchhH----------------------------------------HHHHHHHHHcChHHHHHHHHHHHHHH
Confidence            764210   00000                                        01256677888876655444333333


Q ss_pred             HHHHHHHhHHhhccC-CCccHHHHH---HHHHHHhHhHHHHHHHHHhhcCCchHHHHHHHHHH-HHHHHHHhcCCchHHH
Q 039541          340 GIGVVYFGLLLGVGN-LSFNIYLSL---AFNGLLDIPAYLLTFILIERWSRKSSILTFCILSG-TCSAICVAIGDEQEVL  414 (521)
Q Consensus       340 ~~~~~~~~~~~~~~~-~~~~~~~~~---~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~-i~~~~~~~~~~~~~~~  414 (521)
                      .........+.+.++ .+.+.....   ....++.+++.++.+++.||++++........+.. +.............+.
T Consensus       222 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  301 (394)
T PRK11652        222 GIAVFEACSGVLMGAVLGLSSMTVSILFILPIPAAFFGAWFAGRPNKRFSTLMWQSVICCLLAGLLMWIPGWFGVMNVWT  301 (394)
T ss_pred             HHHHHHHhChHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHH
Confidence            333333233333433 555543333   23345566677777788888773332222222222 2222222211222245


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhccccCchhhhhhhHHHHHhhhhhhhHHHHHHHhhc
Q 039541          415 QIGLELASFFSACVAFNVLLVFGTELFTTCVRNSTTSLVRQAVNLGAAFSPVLISAGR  472 (521)
Q Consensus       415 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~p~~~~~~~  472 (521)
                      .....++.+++.+...+....+..|.+|+ .++++.++.+....+|+.+++.+.+...
T Consensus       302 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~-~~g~~~~~~~~~~~lg~~~~~~~~~~~~  358 (394)
T PRK11652        302 LLVPAALFFFGAGMLFPLATSGAMEPFPY-LAGTAGALLGGLQNIGSGLAALLSAMLP  358 (394)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhccc-cchHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence            55666777888888889999989998874 6799999999999999999999988743

>KOG1330 consensus Sugar transporter/spinster transmembrane protein [Carbohydrate transport and metabolism]

Probab=99.97  E-value=1.5e-31  Score=247.67  Aligned_cols=360  Identities=15%  Similarity=0.151  Sum_probs=252.2

Q ss_pred             CChhHHHHHHHHHHHHHHHHHHHhhhhccccCCcccccCCcccccCCccccccccCcceecCCCCcceeeecceeeCCcc
Q 039541           37 LGLPQFIQVILISLLLIFESQQTFISVYTDEEPTWHCINNTTTCSSSSDICTLSKSAWAWDRPSDTTIISDWSLECAGSS  116 (521)
Q Consensus        37 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~p~~~c~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~i~~~~~~~~~~~~  116 (521)
                      ..+..++.++++++..+++..|.+.+..+                                   .+.+++.||+++++. 
T Consensus        27 ~~~~~~~~l~il~~vnlmny~Dr~~iagv-----------------------------------~~~v~~~fni~~s~~-   70 (493)
T KOG1330|consen   27 SMKSPTLTLVILCLVNLMNYADRYTIAGV-----------------------------------LKEVQTYFNISDSEL-   70 (493)
T ss_pred             ccccchHHHHHHHHHHHHHHhhhhhhhhh-----------------------------------hHHHHHhcCCCchhc-
Confidence            45667888899999999999999999999                                   999999999999777 


Q ss_pred             ccchhhHHHHHHHHHHhhhhhhhccccCCCCchHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHhhccchhhHhhhhhh
Q 039541          117 ILSGLPSSCFFIGCLLGGLALSTLGDSSSLGRKKLLFLSCFAMSITALATIFANNIWIYSTIRFVAGFFRAPIMTSVIVL  196 (521)
Q Consensus       117 ~~~~~~~s~~~lg~~i~~~~~g~l~dr~~~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~  196 (521)
                         |++.+.+.+.+.+++|++|+++||  |+||+++.+|..++.++.++++++..||++++.|.+.|+|.+...++.+++
T Consensus        71 ---Gll~~vf~v~~~i~sPl~gyLadr--yNR~~v~~vG~~iW~~Av~~~~fs~~Fwq~~l~R~~vGiGeAs~~~ia~s~  145 (493)
T KOG1330|consen   71 ---GLLQTVFIVVFMIASPLFGYLADR--YNRKRVIAVGIFIWTLAVFASGFSNHFWQVLLCRGFVGIGEASYSPIAPSL  145 (493)
T ss_pred             ---cchhHHHHHHHHHHHHHHHHHHhh--cCcceEEeeHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhcccchhH
Confidence               999999999999999999999999  999999999999999999999999999999999999999999999999999


Q ss_pred             eeeeecCcchhHHHHHHHHHHHHHHHHHHHHHH-hhcCC-chhHHHHHHHHHHHHHHhhhceeeecchhHHHhcCCHHHH
Q 039541          197 LSEMVSKRWRGQVVIIGFTFFSFGLVSLPAVAY-LSRGS-SWKMLYVWTSIPSIVCCIIIYPFISESPRWLFIHGHEAEA  274 (521)
Q Consensus       197 i~~~~~~~~rg~~~~~~~~~~~~G~~i~~~i~~-~~~~~-~wr~~f~~~~~~~~~~~~~~~~~~~esp~~~~~~~~~~~~  274 (521)
                      ++|.+|.++|++++++++.+..+|..+|.++|. ..+.. .|||.|+..++++++..++.+++.+|+++-     ..++.
T Consensus       146 IaD~f~~~~Rs~~~~ify~~ipvGsglG~vvgs~va~~~~~Wr~af~~~avl~vi~~~L~~~f~~eP~rg-----a~~~~  220 (493)
T KOG1330|consen  146 IADSFPDDKRSRVLGIFYFAIPVGSGLGYVVGSVVASLTFWWRWAFRGSAVLGVIVGLLVFLFVREPERG-----ARDEV  220 (493)
T ss_pred             hhhcCcchhhhHHHHHhhhhcccccceeEEeeeeeccCccceEEEEEeehHHHHHHHHHHHhhccCcccc-----ccccc
Confidence            999999999999999999999999999988854 33333 499999999999999998888888887531     11110


Q ss_pred             HHHHHHHhhhcCCCCCCCccccccCCCCCccccCCCcccccccHHHHhccHHHHHHHHHHHHHHHHHHHHHHhHH----h
Q 039541          275 MAVLKRLASRSNYQSDYGLESCCLSNMPPKAKNVIPKLDLYSSLKDLFNRKWALRRLLTIMALAFGIGVVYFGLL----L  350 (521)
Q Consensus       275 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~  350 (521)
                                 ++.                .+...+..+...+.+.+.+++.+....+......+..+...|..|    +
T Consensus       221 -----------~~~----------------~~~~~~~ts~~kDl~~l~~~~v~v~~sl~~~a~~fv~Gs~sww~p~~~~~  273 (493)
T KOG1330|consen  221 -----------DGE----------------NKMVKPFTSVWKDLKVLAKIKVFVLSSLGIIAAQFVIGSLSWWAPAFIYY  273 (493)
T ss_pred             -----------ccC----------------CcCCCCccchHHHHHHHHccCceeeehHHHHHHHHhccccchhhhhHHHH
Confidence                       000                000111112223555566656544444433333333322211111    1


Q ss_pred             h--ccCCCc-cHHHHHHHHHHHhHhHHHHHHHHHhhcCCc----hHHH-------HHHHHHHHHHHHHHhcCCchHHHHH
Q 039541          351 G--VGNLSF-NIYLSLAFNGLLDIPAYLLTFILIERWSRK----SSIL-------TFCILSGTCSAICVAIGDEQEVLQI  416 (521)
Q Consensus       351 ~--~~~~~~-~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~----~~~~-------~~~~~~~i~~~~~~~~~~~~~~~~~  416 (521)
                      +  +..... .....+.+...++.+|.+++|.++||+.|+    ....       .+..+.+..+.+........ ....
T Consensus       274 ~~~~~~~~~~~~~ifg~vt~~~G~lGvl~Ggiisd~~~~~~~~~~~~~~~q~~~~~g~~~s~~~L~~~~~~~~~s-~~~~  352 (493)
T KOG1330|consen  274 SYELIGFDHNATLIFGGVTCAGGSLGVLFGGIISDKLSRIFPNSGTLRASQLSAALGAPLSIPFLFLFPAFTSSS-MIFG  352 (493)
T ss_pred             HHHHhCCccccchhhhhHHHhhchhhheehHHHHHHHHHhcccccchhHHHHHHhhhhhHHHHHHHHHHhhhhHH-HHHH
Confidence            1  111111 223444556677888889999999985321    1111       11122222222222222222 2222


Q ss_pred             HHHHHHHHH-HHHHHHHHHHhhccccCchhhhhhhHHHHHhh-hhhhhHHHHHHHh
Q 039541          417 GLELASFFS-ACVAFNVLLVFGTELFTTCVRNSTTSLVRQAV-NLGAAFSPVLISA  470 (521)
Q Consensus       417 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~-~~g~~~~p~~~~~  470 (521)
                      +.+++++.. ....++...-+..|..|++.|.++.++...+. .+|.+-+|++.|.
T Consensus       353 ~il~~~g~~~~~~~~a~n~~i~l~vV~p~~Rt~a~a~~~~~~h~fgd~~~p~ivGi  408 (493)
T KOG1330|consen  353 LILFLVGETISWFNWATNNPIFLEVVPPSRRTTAYALDTVFEHIFGDAASPYIVGI  408 (493)
T ss_pred             HHHHHHHHHHHhcccccccceeeEecCcccccHHHHHHHHHHHHhccCCCcceehh
Confidence            233333332 23334566677889999999999999988776 4566667767664

>PRK11195 lysophospholipid transporter LplT; Provisional

Probab=99.97  E-value=8.9e-29  Score=242.09  Aligned_cols=343  Identities=10%  Similarity=-0.027  Sum_probs=238.8

Q ss_pred             CcceeeecceeeCCccccchhhHHHHHHHHHHhhhhhhhccccCCCCchHHHHHHHHHHHHHHHHHhccccHHHHHHHHH
Q 039541          101 DTTIISDWSLECAGSSILSGLPSSCFFIGCLLGGLALSTLGDSSSLGRKKLLFLSCFAMSITALATIFANNIWIYSTIRF  180 (521)
Q Consensus       101 ~~~i~~~~~~~~~~~~~~~~~~~s~~~lg~~i~~~~~g~l~dr~~~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~  180 (521)
                      .+.+.++++.+..+.    +++.+.+.+++.+.++++|+++||  +|||++++++.++.++++++++++.+.   ++.|+
T Consensus        26 ~~~~~~~~~~s~~~~----~~~~~~~~l~~~l~~~~~G~laDr--~grr~vl~~~~~~~~~~~~~~~~~~~~---~~~r~   96 (393)
T PRK11195         26 AIALLKELHYPDWSQ----PLLQMFFVLAYIVLAPFVGAFADS--FPKGRVMFIANGIKLLGCLLMLFGIHP---LLAYG   96 (393)
T ss_pred             HHHHHHHcCCcHHHH----HHHHHHHHHHHHHHHhhhhHhhhc--cCCchhhHHHHHHHHHHHHHHHHHHHH---HHHHH
Confidence            455667888877555    999999999999999999999999  999999999999999999888877664   78899


Q ss_pred             HhhccchhhHhhhhhheeeeecCcchhHHHHHHHHHHHHHHHHHHHHH-HhhcCCchhHHHHHHHHHHHHHHhhhceeee
Q 039541          181 VAGFFRAPIMTSVIVLLSEMVSKRWRGQVVIIGFTFFSFGLVSLPAVA-YLSRGSSWKMLYVWTSIPSIVCCIIIYPFIS  259 (521)
Q Consensus       181 l~G~~~g~~~~~~~~~i~~~~~~~~rg~~~~~~~~~~~~G~~i~~~i~-~~~~~~~wr~~f~~~~~~~~~~~~~~~~~~~  259 (521)
                      ++|++.+...|...+++.|++|+++|++++++.+....+|.++||.++ .+.+ ..|+..+.+.+...++.. +..+.+|
T Consensus        97 l~G~~~a~~~pa~~a~i~~~~~~~~~~~a~~~~~~~~~~~~~~Gp~lgG~l~~-~~~~~~~~i~~~~~~~~~-~~~~~l~  174 (393)
T PRK11195         97 LVGIGAAAYSPAKYGILTELLPGEKLVKANGWMEGSTIAAILLGTVLGGALAD-PHAEAALAVCALIYLLAA-LFNLFIP  174 (393)
T ss_pred             HHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHH-HHHhcCC
Confidence            999999999999999999999999999999999999999999999995 4444 458888877766555444 5556778


Q ss_pred             cchhHHHhcCCHHHHHHHHHHHhhhcCCCCCCCccccccCCCCCccccCCCcccccccHHHHhccHHHHHHHHHHHHHHH
Q 039541          260 ESPRWLFIHGHEAEAMAVLKRLASRSNYQSDYGLESCCLSNMPPKAKNVIPKLDLYSSLKDLFNRKWALRRLLTIMALAF  339 (521)
Q Consensus       260 esp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~  339 (521)
                      |+|+...  .+.++.....+..                                 .+.++.++++|.++.......+.+.
T Consensus       175 ~~~~~~~--~~~~~~~~~~~~~---------------------------------~~~~~~l~~~~~~~~~~~~~~~~~~  219 (393)
T PRK11195        175 RLGARRP--GQSWNPIALLRDF---------------------------------FHACRVLWRDKLGRFSLAGTTLFWG  219 (393)
T ss_pred             CCccccc--ccCCCHHHHHHHH---------------------------------HHHHHHHHhCchhHHHHHHHHHHHH
Confidence            7653210  0000000001111                                 0134567788776655544444444


Q ss_pred             HHHHHHHhHHhhccC-CCccHHH---HHHHHHHHhHhHHHHHHHHHhhcCCchHHHHHHHHHHHHHHHHHhcCCchHHHH
Q 039541          340 GIGVVYFGLLLGVGN-LSFNIYL---SLAFNGLLDIPAYLLTFILIERWSRKSSILTFCILSGTCSAICVAIGDEQEVLQ  415 (521)
Q Consensus       340 ~~~~~~~~~~~~~~~-~~~~~~~---~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~  415 (521)
                      ......+..+.+.++ .+.++..   .....+++.++++++.+++.||.++++.+..+.. .++..+.+....  +.+..
T Consensus       220 ~~~~~~~~~~~~~~~~lg~s~~~~G~~~~~~~~g~i~g~~~~~~l~~~~~~~~~~~~g~~-~~~~~~~~~~~~--~~~~~  296 (393)
T PRK11195        220 AGATLRFLVLAWAPVALGITLNQPAYLQAVVAIGIAVGAGAAARLVTLETVLRVLPAGIL-MGLVVLLMALQH--SLLPA  296 (393)
T ss_pred             HHHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHHHHHHHHHHhcCCcccchHHHHHH-HHHHHHHHHHHh--HHHHH
Confidence            444444444444432 4444433   3345567788899999999999988887776643 333333333322  22444


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhccccCchh-hhhhhHHHHHhhhhhhhHHHHHHHhh-ccchhHHHHHHHHHHHHHhHh
Q 039541          416 IGLELASFFSACVAFNVLLVFGTELFTTCV-RNSTTSLVRQAVNLGAAFSPVLISAG-RQNEFLSFGVFGLVVFCFGFF  492 (521)
Q Consensus       416 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-r~~~~~~~~~~~~~g~~~~p~~~~~~-~~~~~~~~~~~~~~~~~~~~~  492 (521)
                      .+..++.|++.+...+...+...+..|++. +|++.++.+....++..++..+.+.. ..+....+.+.+...++...+
T Consensus       297 ~~~~~~~G~~~g~~~~~~~~~~q~~~~~~~~~g~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  375 (393)
T PRK11195        297 YPLLILIGALGGFFVVPMNALLQHRGHVLVGAGHSIAVQNFNENLAMLLMLGLYSLLVKLGVPVVAVIVGFGLLVALAM  375 (393)
T ss_pred             HHHHHHHHHhhhhhhhhHHHHHHhhCcccccchhHHHHHhHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHH
Confidence            556667777777777777777788766654 79999999999999999888887753 334444454444444444443

>COG2223 NarK Nitrate/nitrite transporter [Inorganic ion transport and metabolism]

Probab=99.97  E-value=5.2e-29  Score=229.24  Aligned_cols=375  Identities=17%  Similarity=0.097  Sum_probs=289.2

Q ss_pred             CChhHHHHHHHHHHHHHHHHHHHhhhhccccCCcccccCCcccccCCccccccccCcceecCCCCcceeeecceeeCCcc
Q 039541           37 LGLPQFIQVILISLLLIFESQQTFISVYTDEEPTWHCINNTTTCSSSSDICTLSKSAWAWDRPSDTTIISDWSLECAGSS  116 (521)
Q Consensus        37 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~p~~~c~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~i~~~~~~~~~~~~  116 (521)
                      .++.+++.+.+..+......+.....+.+                                   .+.|.+++|+|++|. 
T Consensus         8 ~k~~~~~~L~~S~~af~v~F~VW~l~s~l-----------------------------------~~~i~~~~~LS~~q~-   51 (417)
T COG2223           8 GKRIARRNLWLSTLAFDVGFMVWTLFSPL-----------------------------------GVFIKSDFGLSEGQK-   51 (417)
T ss_pred             cccchhHHHHHHHHHHHHHHHHHHHHHHH-----------------------------------HhhhccccCCCHHHH-
Confidence            44556666777777777777777778888                                   788889999999888 


Q ss_pred             ccchhhHHHHHHHHHHhhhhhhhccccCCCCchHHHHHHHHHHHHHHHHHhcccc---HHHHHHHHHHhhccchhhHhhh
Q 039541          117 ILSGLPSSCFFIGCLLGGLALSTLGDSSSLGRKKLLFLSCFAMSITALATIFANN---IWIYSTIRFVAGFFRAPIMTSV  193 (521)
Q Consensus       117 ~~~~~~~s~~~lg~~i~~~~~g~l~dr~~~Grr~~l~~~~~~~~~~~~~~~~~~~---~~~l~~~r~l~G~~~g~~~~~~  193 (521)
                         +++.++..+...+..++.|++.||  ||.|++..+++++..+-++..+++.+   ++++++.+++.|++.+ .+.+.
T Consensus        52 ---~ll~aiPil~GallRl~~g~l~dr--fGgR~~~~~s~~l~~IP~~~~~~a~~~~~~~~ll~~gll~G~~Ga-sFav~  125 (417)
T COG2223          52 ---GLLVAIPILVGALLRLPYGFLTDR--FGGRKWTILSMLLLLIPCLGLAFAVTYPSTWQLLVIGLLLGLAGA-SFAVG  125 (417)
T ss_pred             ---HHHHHHHHHHhHHHHHHHHhhhcc--cCchHHHHHHHHHHHHHHHHHHHHccCCchHHHHHHHHHHhcccc-eehcc
Confidence               999999999999999999999999  99999999999999999999999854   4599999999999965 88999


Q ss_pred             hhheeeeecCcchhHHHHHHHHHHHHHHHHHHHHH-HhhcCCc---hhHHHHHHHHHHHHHHhhhceeeecchhHHHhcC
Q 039541          194 IVLLSEMVSKRWRGQVVIIGFTFFSFGLVSLPAVA-YLSRGSS---WKMLYVWTSIPSIVCCIIIYPFISESPRWLFIHG  269 (521)
Q Consensus       194 ~~~i~~~~~~~~rg~~~~~~~~~~~~G~~i~~~i~-~~~~~~~---wr~~f~~~~~~~~~~~~~~~~~~~esp~~~~~~~  269 (521)
                      ..++++++||+++|.++|+.. ..++|..+..+++ .+....+   ||....+..+..++..+..++.+.|.|+.....+
T Consensus       126 m~~~s~~fP~~~qG~AlGI~g-~GN~G~av~q~~~P~v~~~~g~~~w~~~~~i~~~~l~v~~v~~~~~~~d~p~~r~~~~  204 (417)
T COG2223         126 MPNASFFFPKEKQGLALGIAG-AGNLGVAVAQLVAPLVAVAFGFLAWRNVAGIYVVALAIAAVLAWLGMNDVPEHRASVK  204 (417)
T ss_pred             cccccccCChhhhhHHHHHhc-cccccHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhCCChhhhcccc
Confidence            999999999999999999999 8888887766663 4444456   9999999998888888788888887764210000


Q ss_pred             CHHHHHHHHHHHhhhcCCCCCCCccccccCCCCCccccCCCcccccccHHHHhccHHHHHHHHHHHHHHHHH-HHHHHhH
Q 039541          270 HEAEAMAVLKRLASRSNYQSDYGLESCCLSNMPPKAKNVIPKLDLYSSLKDLFNRKWALRRLLTIMALAFGI-GVVYFGL  348 (521)
Q Consensus       270 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~-~~~~~~~  348 (521)
                                       ..                     .    ..+++.++++++.|...+......-+. .+..+..
T Consensus       205 -----------------~~---------------------~----~~~~~~v~~~~~~W~lsllY~~tFG~Fvgfs~~l~  242 (417)
T COG2223         205 -----------------PQ---------------------L----PAQLKAVFSNKDTWLLSLLYFATFGGFVGFSAYLP  242 (417)
T ss_pred             -----------------cc---------------------c----hhHHHHHhcCcchHHHHHHHHHHHHHHHHHHHHHH
Confidence                             00                     0    025677888888777666655444433 3334444


Q ss_pred             HhhccCCCccHHHH---HHHHHHHhHhHHHHHHHHHhhcCCchHHHHHHHHHHHHHHHHHhcCCc-----hHHHHHHHHH
Q 039541          349 LLGVGNLSFNIYLS---LAFNGLLDIPAYLLTFILIERWSRKSSILTFCILSGTCSAICVAIGDE-----QEVLQIGLEL  420 (521)
Q Consensus       349 ~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~i~~~~~~~~~~~-----~~~~~~~~~~  420 (521)
                      .++..+++.+....   .....+.+.+.+.++|+++||+|.+|.+.+.+..++++..+.......     +.+......+
T Consensus       243 ~~~~~~fg~~~~~Ag~~a~~f~~~g~l~Rp~GG~LsDR~Gg~rv~~~~f~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l  322 (417)
T COG2223         243 MYLVTQFGLSPVTAGLIAFLFPLIGALARPLGGWLSDRIGGRRVTLAVFVGMALAAALLSLFLTGFGHGGSFVVFVAVFL  322 (417)
T ss_pred             HHHHHhcCCChhhHHHHHHHHHHHHHHHHhccchhhhhccchhHHHHHHHHHHHHHHHHHccccccccCcchHHHHHHHH
Confidence            45555667665443   344445566778899999999999999999999999888887776421     1245555566


Q ss_pred             HHHHHHHHHHHHHHHhhccccCchhhhhhhHHHHHhhhhhhhHHHHHHHhh---ccchhHHHHHHHHHHHHHhHhhhccc
Q 039541          421 ASFFSACVAFNVLLVFGTELFTTCVRNSTTSLVRQAVNLGAAFSPVLISAG---RQNEFLSFGVFGLVVFCFGFFVVFLP  497 (521)
Q Consensus       421 ~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~p~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~  497 (521)
                      ..+++.+......+-+++..+|++. |.+.|+....+.+|++.-|...+..   ...+...|.++..+.+++.+....+.
T Consensus       323 ~l~~~~G~GnGsvfk~Ip~if~~~~-G~v~G~vga~G~lGGf~lp~~~g~~~~~tg~~~~~f~~~~~~~~~a~v~~~~~y  401 (417)
T COG2223         323 ALFVFAGLGNGSVFKMIPVIFPKET-GAVTGIVGAIGGLGGFFLPLAFGVSLDLTGSYTGAFMLLLAFYLVALVLTWALY  401 (417)
T ss_pred             HHHHHhccCcchheeechHHHHhhh-hHHHHHHHHhccccccchhHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHH
Confidence            6777778888888888999998866 9999999999999999999998862   23467778888888777777655443

>PRK10473 multidrug efflux system protein MdtL; Provisional

Probab=99.97  E-value=4.9e-28  Score=237.91  Aligned_cols=318  Identities=14%  Similarity=0.096  Sum_probs=225.8

Q ss_pred             CcceeeecceeeCCccccchhhHHHHHHHHHHhhhhhhhccccCCCCchHHHHHHHHHHHHHHHHHhccccHHHHHHHHH
Q 039541          101 DTTIISDWSLECAGSSILSGLPSSCFFIGCLLGGLALSTLGDSSSLGRKKLLFLSCFAMSITALATIFANNIWIYSTIRF  180 (521)
Q Consensus       101 ~~~i~~~~~~~~~~~~~~~~~~~s~~~lg~~i~~~~~g~l~dr~~~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~  180 (521)
                      +|.+.+++|.+.++.    ++..+.+.++..+++++.|+++||  +|||++++.+.++.+++.+++.++++++.+++.|+
T Consensus        26 lp~~~~~~~~s~~~~----~~~~~~~~~~~~~~~~~~G~l~Dr--~g~r~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~   99 (392)
T PRK10473         26 LPRIAADLNASEAQL----HIAFSVYLAGMAAAMLFAGKIADR--SGRKPVAIPGAALFIIASLLCSLAETSSLFLAGRF   99 (392)
T ss_pred             HHHHHHHhCCCHHHH----HHHHHHHHHHHHHHHHhHhHHHHH--hCChHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHH
Confidence            789999999998666    999999999999999999999999  99999999999999999999999999999999999


Q ss_pred             HhhccchhhHhhhhhheeeeecCcchhHHHHHHHHHHHHHHHHHHHHH-HhhcCCchhHHHHHHHHHHHHHHhhhceeee
Q 039541          181 VAGFFRAPIMTSVIVLLSEMVSKRWRGQVVIIGFTFFSFGLVSLPAVA-YLSRGSSWKMLYVWTSIPSIVCCIIIYPFIS  259 (521)
Q Consensus       181 l~G~~~g~~~~~~~~~i~~~~~~~~rg~~~~~~~~~~~~G~~i~~~i~-~~~~~~~wr~~f~~~~~~~~~~~~~~~~~~~  259 (521)
                      ++|++.+...+...+++.|++|+++|+++.++.+....+|..++|.++ .+.+..+||+.|++.++..++..++..+.+|
T Consensus       100 l~g~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~i~~~~~~~i~~~l~~~~g~~~~~~~~~~~~~i~~~~~~~~~~  179 (392)
T PRK10473        100 LQGIGAGCCYVVAFAILRDTLDDRRRAKVLSLLNGITCIIPVLAPVLGHLIMLKFPWQSLFYTMAAMGILVLLLSLFILK  179 (392)
T ss_pred             HHHhhhhHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcChHHHHHHHHHHHHHHHHHHHHHcC
Confidence            999999999999999999999999999999999999999999999984 5556789999999998887777756666677


Q ss_pred             cchhHHHhcCCHHHHHHHHHHHhhhcCCCCCCCccccccCCCCCccccCCCcccccccHHHHhccHHHHHHHHHHHHHHH
Q 039541          260 ESPRWLFIHGHEAEAMAVLKRLASRSNYQSDYGLESCCLSNMPPKAKNVIPKLDLYSSLKDLFNRKWALRRLLTIMALAF  339 (521)
Q Consensus       260 esp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~  339 (521)
                      |+++..   .+.+                                       .+.....++.++++.++...+...+...
T Consensus       180 ~~~~~~---~~~~---------------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~  217 (392)
T PRK10473        180 ETRPAR---APAA---------------------------------------SSKPRENSESLLNRFFLSRLVITTLSVT  217 (392)
T ss_pred             CCCCcc---cCCc---------------------------------------cchHHHHHHHHhCHHHHHHHHHHHHHHH
Confidence            753210   0000                                       0000134456777776554444333333


Q ss_pred             HHHHHHHhHHhh-ccCCCccHHH---HHHHHHHHhHhHHHHHHHHHhhcCCchHHHHHHHHHHHHHHHHHhcCCchHHHH
Q 039541          340 GIGVVYFGLLLG-VGNLSFNIYL---SLAFNGLLDIPAYLLTFILIERWSRKSSILTFCILSGTCSAICVAIGDEQEVLQ  415 (521)
Q Consensus       340 ~~~~~~~~~~~~-~~~~~~~~~~---~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~  415 (521)
                      .........|.+ .++.+.+...   .....++..+++.++.+++.||+|||+.+..+..+..++.+.+.+....  +..
T Consensus       218 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~i~~~~~~~~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~--~~~  295 (392)
T PRK10473        218 VILTFVNTSPVLLMEQMGFSRGEYAIIMALTAGVSMTVSFSTPFALGIFKPRTLMLTSQVLFLAAGITLALSPSH--AVS  295 (392)
T ss_pred             HHHHHHHhCHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHH--HHH
Confidence            222222222333 3344554433   3344567778899999999999999999988888777777666654333  223


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhccccCchhh-hhhhHHHHHhhhhhhhHHHHHHHh
Q 039541          416 IGLELASFFSACVAFNVLLVFGTELFTTCVR-NSTTSLVRQAVNLGAAFSPVLISA  470 (521)
Q Consensus       416 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r-~~~~~~~~~~~~~g~~~~p~~~~~  470 (521)
                      .....+.+.+.+..++....  .+..|.+.| +.+.++......+|..+++.+.+.
T Consensus       296 ~~~~~l~~~g~~~~~~~~~~--~~~~~~~~~~g~~~~~~~~~~~~g~~~~~~l~~~  349 (392)
T PRK10473        296 LFGITLICAGFSVGFGVAMS--QALGPFSLRAGVASSTLGIAQVCGSSLWIWLAAV  349 (392)
T ss_pred             HHHHHHHHHHHHHHhHHHHH--HHhccCcccccHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33333434444444333322  333443333 445555555555666666666654

>KOG2533 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]

Probab=99.97  E-value=1.7e-28  Score=239.68  Aligned_cols=367  Identities=17%  Similarity=0.178  Sum_probs=265.3

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHhhhhccccCCcccccCCcccccCCccccccccCcceecCCCCcceeeecceeeCCcccc
Q 039541           39 LPQFIQVILISLLLIFESQQTFISVYTDEEPTWHCINNTTTCSSSSDICTLSKSAWAWDRPSDTTIISDWSLECAGSSIL  118 (521)
Q Consensus        39 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~p~~~c~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~  118 (521)
                      |...+++..+++.++....+...++..                                  .+-.+.+|.+...++.   
T Consensus        41 K~dl~i~~~~~~~y~~~~~d~~si~~a----------------------------------~l~g~~edl~~~~~~l---   83 (495)
T KOG2533|consen   41 KLDLFILPFLCYLYFHAYLDKSSIVNA----------------------------------SLSGLKEDLKLVGNQL---   83 (495)
T ss_pred             HHHHHHHHHHHHHHHHHhcchhcchhH----------------------------------HHcCCccccchhhhhh---
Confidence            344555666677777777777666554                                  1344678989888777   


Q ss_pred             chhhHHHHHHHHHHhhhhhhhccccCCCCchHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHhhccchhhHhhhhhhee
Q 039541          119 SGLPSSCFFIGCLLGGLALSTLGDSSSLGRKKLLFLSCFAMSITALATIFANNIWIYSTIRFVAGFFRAPIMTSVIVLLS  198 (521)
Q Consensus       119 ~~~~~s~~~lg~~i~~~~~g~l~dr~~~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~  198 (521)
                       +.+.++++++++++++++|.+.||  ++-.+.+....+++++..++....+|++.+++.|++.|+..+..+|....+++
T Consensus        84 -~~~~t~F~v~Yii~~~p~~~L~~r--~~ls~~l~~~~~~w~~~~~~~~~~~s~~~~ialr~llGl~es~~wP~~~~~lg  160 (495)
T KOG2533|consen   84 -GVLDTVFYVGYIIGQFPSGLLGDR--FPLSKGLSVSGILWGLFGFLTAAVHSFPGLIALRFLLGLFESGGWPGVVAILG  160 (495)
T ss_pred             -hhHHHHHHHHHHHHHhhHHHHHHh--CChHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcccchHHHHHHH
Confidence             999999999999999999999999  99999999999999999988888999999999999999999999999999999


Q ss_pred             eeecCcchhHHHHHHHHHHHHHHHHHHHHHHh-------hcCCchhHHHHHHHHHHHHHHhhhceeeecchhHHHhcCCH
Q 039541          199 EMVSKRWRGQVVIIGFTFFSFGLVSLPAVAYL-------SRGSSWKMLYVWTSIPSIVCCIIIYPFISESPRWLFIHGHE  271 (521)
Q Consensus       199 ~~~~~~~rg~~~~~~~~~~~~G~~i~~~i~~~-------~~~~~wr~~f~~~~~~~~~~~~~~~~~~~esp~~~~~~~~~  271 (521)
                      .|+.+++|++.++++.+..++|.++|.++++.       ....||||.|++.+++.++..+++++++|+.|....-. +.
T Consensus       161 ~wy~~~e~g~r~~~~~a~~~~g~i~ggliA~g~~~~~~~~~~~gW~~~FiI~G~i~~~~gi~~f~~lp~~P~~~~fl-~~  239 (495)
T KOG2533|consen  161 NWYGKSERGLRMGIWYASASLGNIFGGLIAYGVFKLNGSGGLAGWRWLFIIEGVITLVLGIVVFFFLPDNPSKAWFL-TD  239 (495)
T ss_pred             hhcChhhhhhhHHHHHHhcchhhHHHHHHHHHhhhhcCCCCcCCceeehhHHHHHHHHHHheEEEEecCChhhcccc-ch
Confidence            99999999999999999999999999999655       34579999999999999999989999999999622111 11


Q ss_pred             HHHHHHHHHHhhhcCCCCCCCccccccCCCCCccccCCCcccccccHHHHhccHHHHHHHHHHHHHHHHHHHHHHhHHhh
Q 039541          272 AEAMAVLKRLASRSNYQSDYGLESCCLSNMPPKAKNVIPKLDLYSSLKDLFNRKWALRRLLTIMALAFGIGVVYFGLLLG  351 (521)
Q Consensus       272 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  351 (521)
                      +|..-..++..+ .+..                   ...+..++..+++.+++|..|...+..++.....+...+..|++
T Consensus       240 ~ek~~~~~~~~~-~~~~-------------------~~~~~~~~~~~~~a~~dp~vw~~~l~~~~~~lv~~~~~~~lpl~  299 (495)
T KOG2533|consen  240 EEKELVVERLRE-SPSG-------------------GIENKFKWKGFKEALKDPGVWPFSLCYFFLKLVNYGFSYWLPLY  299 (495)
T ss_pred             HHHHHHHHHHHh-ccCC-------------------CcccccCHHHHHHHHhchhHHHHHHHHHHHhhccccHHHHHHHH
Confidence            111111112111 1000                   00000223578999999998888888888888777777778888


Q ss_pred             ccC-CCccH---HHHHHHHHHHhHhHHHHHHHHHhh----cCCchHHHHHHHHHHHHH-HHHHhcCCchHHHHHHHHHHH
Q 039541          352 VGN-LSFNI---YLSLAFNGLLDIPAYLLTFILIER----WSRKSSILTFCILSGTCS-AICVAIGDEQEVLQIGLELAS  422 (521)
Q Consensus       352 ~~~-~~~~~---~~~~~~~~~~~~~~~~~~g~l~dr----~g~~~~~~~~~~~~~i~~-~~~~~~~~~~~~~~~~~~~~~  422 (521)
                      +.+ .+.+.   ........++++++.++.|+++||    ..+|........+..+.. ..+......  .......+..
T Consensus       300 l~~~~~~s~~~a~~ls~~~~~~g~v~~i~ag~lsdr~~~~~~~~~~~~~~~~~~~~~g~~~l~~~~~~--~~~~~~~~~~  377 (495)
T KOG2533|consen  300 LKSNGGYSELQANLLSTPYDVGGIVGLILAGYLSDRLKTIFARRLLFIVFLCLYAIIGAISLLAAAVL--PGAYGAFLIG  377 (495)
T ss_pred             HHcCCCcChHHhccccchHHhhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHhhccc--hHHhHHHHhc
Confidence            877 33433   333466778899999999999999    455555554444444333 333333222  3444444555


Q ss_pred             HHHHHHHHHHHHHhhccccCchhhhhh-hHHHHHhhhhhhhHHHHHH
Q 039541          423 FFSACVAFNVLLVFGTELFTTCVRNST-TSLVRQAVNLGAAFSPVLI  468 (521)
Q Consensus       423 ~~~~~~~~~~~~~~~~~~~~~~~r~~~-~~~~~~~~~~g~~~~p~~~  468 (521)
                      .++.....+......++....+.|... .+........++.++|.+.
T Consensus       378 ~~~~~~~~~~~~~w~s~~~~g~~k~~~~~~~~i~~~~s~~~~~~~~~  424 (495)
T KOG2533|consen  378 PYGLIATAIIALSWTSANLAGNTKALTTVSAIIDGTGSAGAISGQLF  424 (495)
T ss_pred             chhhHHHHHHHHhhccccccchHHhHHHHhhhhcchhHHHHhhhhhc
Confidence            555666667777777777765555444 3444444455555555554

>TIGR00885 fucP L-fucose:H+ symporter permease

Probab=99.97  E-value=7.8e-28  Score=235.89  Aligned_cols=338  Identities=12%  Similarity=0.059  Sum_probs=251.0

Q ss_pred             HHHHHHHHHHHHHHHhhhhccccCCcccccCCcccccCCccccccccCcceecCCCCcceeeecceeeCCccccchhhHH
Q 039541           45 VILISLLLIFESQQTFISVYTDEEPTWHCINNTTTCSSSSDICTLSKSAWAWDRPSDTTIISDWSLECAGSSILSGLPSS  124 (521)
Q Consensus        45 ~~~~~l~~~~~~~~~~~~~~~~~~p~~~c~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~s  124 (521)
                      +.++++..+.-++......+.                                   .|.+++++|++..+.    |++.+
T Consensus         5 ~~~~~~~f~~~G~~~~~~~~l-----------------------------------~~~~~~~~~~s~~~~----g~l~s   45 (410)
T TIGR00885         5 FALITSLFALWGFANDITNPM-----------------------------------VPQFQQAFTLTAFQA----ALVQS   45 (410)
T ss_pred             HHHHHHHHHHHHHHHHhHHHH-----------------------------------HHHHHHHhCCCHHHH----HHHHH
Confidence            455666777777777777788                                   899999999999776    99999


Q ss_pred             HHHHHHHHhhhhhhhccccCCCCchHHHHHHHHHHHHHHHHHhc---cccHHHHHHHHHHhhccchhhHhhhhhheeeee
Q 039541          125 CFFIGCLLGGLALSTLGDSSSLGRKKLLFLSCFAMSITALATIF---ANNIWIYSTIRFVAGFFRAPIMTSVIVLLSEMV  201 (521)
Q Consensus       125 ~~~lg~~i~~~~~g~l~dr~~~Grr~~l~~~~~~~~~~~~~~~~---~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~  201 (521)
                      .+.+++.+++++.|++.||  +|||+++++++++.+++.++...   .++++.+++.|++.|+|.|...+....++.+..
T Consensus        46 ~~~~g~~i~~~~~g~l~~r--~G~r~~~~~g~~l~~~g~~l~~~~~~~~~~~~~l~~~~l~G~g~g~~~~~~~~~~~~~~  123 (410)
T TIGR00885        46 AFYGGYFIMAIPAAIFMKK--LSYKAGILLGLFLYALGAFLFWPAAEIMNYTLFLVGLFILTAGLGFLETAANPYILVMG  123 (410)
T ss_pred             HHHHHHHHHHHHHHHHHHH--hCchHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHhhHHHHHhhhhHHHHHHC
Confidence            9999999999999999999  99999999999999999988644   468999999999999999999999999999999


Q ss_pred             cCcchhHHHHHHHHHHHHHHHHHHHHH-Hhhc--------------------------CCchhHHHHHHHHHHHHHHhhh
Q 039541          202 SKRWRGQVVIIGFTFFSFGLVSLPAVA-YLSR--------------------------GSSWKMLYVWTSIPSIVCCIII  254 (521)
Q Consensus       202 ~~~~rg~~~~~~~~~~~~G~~i~~~i~-~~~~--------------------------~~~wr~~f~~~~~~~~~~~~~~  254 (521)
                      |+++|++.+++.+...++|..++|.++ .+..                          ..+||++|++.+++.++..++.
T Consensus       124 ~~~~~~~~~~~~~~~~~lG~~~g~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~fl~~a~~~~~~~~~~  203 (410)
T TIGR00885       124 PESTATRRLNLAQSFNPFGSIIGMVVAQQLILSNLPHQSQDVLDKLSPEELSAIKHSDLASVQTPYMIIGAVVLAVALLI  203 (410)
T ss_pred             CHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccchhhhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999884 3321                          1359999999888777665333


Q ss_pred             c-eeeecchhHHHhcCCHHHHHHHHHHHhhhcCCCCCCCccccccCCCCCccccCCCcccccccHHHHhccHHHHHHHHH
Q 039541          255 Y-PFISESPRWLFIHGHEAEAMAVLKRLASRSNYQSDYGLESCCLSNMPPKAKNVIPKLDLYSSLKDLFNRKWALRRLLT  333 (521)
Q Consensus       255 ~-~~~~esp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~  333 (521)
                      . ...||.++     ++ ++                                     +.+..++.++++|+|.++...+.
T Consensus       204 ~~~~~p~~~~-----~~-~~-------------------------------------~~~~~~~~~~~~~~~~~~~~~l~  240 (410)
T TIGR00885       204 MLTKMPALNH-----SD-AK-------------------------------------QISFSASLSRLARIRHYREGVIA  240 (410)
T ss_pred             HHhcCCCCCc-----cc-cc-------------------------------------cccchhhHHHHHhChhHHHHHHH
Confidence            2 11232110     00 00                                     00001144567888887665555


Q ss_pred             HHHHHHHHHHHHHhHHhhccCC--CccHH---HHHHHHHHHhHhHHHHHHHHHhhcCCchHHHHHHHHHHHHHHHHHhcC
Q 039541          334 IMALAFGIGVVYFGLLLGVGNL--SFNIY---LSLAFNGLLDIPAYLLTFILIERWSRKSSILTFCILSGTCSAICVAIG  408 (521)
Q Consensus       334 ~~~~~~~~~~~~~~~~~~~~~~--~~~~~---~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~i~~~~~~~~~  408 (521)
                      .+++..........++.+.++.  +.+..   ...........+|+++++++.||+++|+.+.++..+..+.+++..+.+
T Consensus       241 ~f~yvg~e~~~~s~l~~y~~~~~~~~~~~~a~~~~~~~~~~~~vGR~~~~~l~~r~~~~~~l~i~~~~~~~~~ll~~~~~  320 (410)
T TIGR00885       241 QFFYVGVQIMCWTFIIQYAVRLIPGMTAGFAANYNIGAMVIFFISRFIGTWLISYLAAHKVLMAYAIIGMALCLGSIFAG  320 (410)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHcC
Confidence            4444333323333334433332  21111   122223355678999999999999999998888888888877777655


Q ss_pred             CchHHHHHHHHHHHHHHHHHHHHHHHHhhccccCchhhhhhhHHHHHhhhhhhhHHHHHHHhh
Q 039541          409 DEQEVLQIGLELASFFSACVAFNVLLVFGTELFTTCVRNSTTSLVRQAVNLGAAFSPVLISAG  471 (521)
Q Consensus       409 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~p~~~~~~  471 (521)
                      ..   .......+.+++.+..+|..++...+..+++.+..+.++....  +|+.+.|.+.|..
T Consensus       321 ~~---~~~~~l~~~glf~s~~fp~i~sl~~~~~g~~~~~~s~~l~~~~--~Gga~~p~l~G~~  378 (410)
T TIGR00885       321 GH---VGLYCLTLCSAFMSLMFPTIYGIALKGLGQDTKYGAAGLVMAI--IGGGIVPPLQGFI  378 (410)
T ss_pred             Ch---HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHH--hccchHHHHHHHH
Confidence            43   3456677788889999999999999999988755455555443  9999999999873

This family describes the L-fucose permease in bacteria. L-fucose(6-deoxy-L-galactose) is a monosaccharide found in glycoproteins and cell wall polysaccharides. L-fucose is used in bacteria through an inducible pathway mediated by atleast four enzymes: a permease, isomerase, kinase and an aldolase which are encoded by fucP, fucI, fucK, fucA respectively. The fuc genes belong to a regulon comprising of four linked operons: fucO, fucA, fucPIK and fucR. The positive regulator is encoded by fucR, whose protein responds to fuculose-1-phosphate, which acts as an effector.

>PRK11646 multidrug resistance protein MdtH; Provisional

Probab=99.97  E-value=4.6e-28  Score=237.66  Aligned_cols=339  Identities=10%  Similarity=0.054  Sum_probs=241.3

Q ss_pred             CcceeeecceeeCCccccchhhHHHHHHHHHHhhhhhhhccccCCCCchHHHHHHHHHHHHHHHHHhccccHHHHHHHHH
Q 039541          101 DTTIISDWSLECAGSSILSGLPSSCFFIGCLLGGLALSTLGDSSSLGRKKLLFLSCFAMSITALATIFANNIWIYSTIRF  180 (521)
Q Consensus       101 ~~~i~~~~~~~~~~~~~~~~~~~s~~~lg~~i~~~~~g~l~dr~~~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~  180 (521)
                      .+.+++++|++..+.    |++.+.+.++..+.+++.|+++||  +|||++++.+.++.+++.+++.++++++.+++.|+
T Consensus        34 ~~~~~~~~g~s~~~~----gl~~~~~~l~~~~~~~~~G~l~dr--~g~k~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~  107 (400)
T PRK11646         34 SIRFVDQLGWAAVMV----GIALGLRQFIQQGLGIFGGAIADR--FGAKPMIVTGMLMRAAGFATMAIAHEPWLLWLSCI  107 (400)
T ss_pred             HHHHHHHhCCcHHHH----HHHHHHHHHHHHHHHhhhhHHHHH--hCchHHHHHHHHHHHHHHHHHHHhccHHHHHHHHH
Confidence            345678899998665    999999999999999999999999  99999999999999999999999999999999999


Q ss_pred             HhhccchhhHhhhhhheeeeecCcchhHHHHHHHHHHHHHHHHHHHH-HHhhcCCchhHHHHHHHHHHHHHHhhhceeee
Q 039541          181 VAGFFRAPIMTSVIVLLSEMVSKRWRGQVVIIGFTFFSFGLVSLPAV-AYLSRGSSWKMLYVWTSIPSIVCCIIIYPFIS  259 (521)
Q Consensus       181 l~G~~~g~~~~~~~~~i~~~~~~~~rg~~~~~~~~~~~~G~~i~~~i-~~~~~~~~wr~~f~~~~~~~~~~~~~~~~~~~  259 (521)
                      ++|++.+...+...+++.|++|+++|++++++......+|..+||.+ +.+. .++||+.|++.++..++..++..+++|
T Consensus       108 l~g~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~g~~ig~~l~g~l~-~~g~~~~f~~~~~~~~~~~i~~~~~~~  186 (400)
T PRK11646        108 LSGLGGTLFDPPRTALVIKLIRPHQRGRFFSLLMMQDSAGAVIGALLGSWLL-QYDFRLVCATGAVLFVLAAAFNAWLLP  186 (400)
T ss_pred             HHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhhHHHHHHHHHHHHHHHHHHHHHhCC
Confidence            99999998889999999999999999999999999999999999999 5555 779999999988877766544444555


Q ss_pred             cchhHHHhcCCHHHHHHHHHHHhhhcCCCCCCCccccccCCCCCccccCCCcccccccHHHHhccHHHHHHHHHHHHHHH
Q 039541          260 ESPRWLFIHGHEAEAMAVLKRLASRSNYQSDYGLESCCLSNMPPKAKNVIPKLDLYSSLKDLFNRKWALRRLLTIMALAF  339 (521)
Q Consensus       260 esp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~  339 (521)
                      |.+.    +...++                                        ..++++++++++.++...+.......
T Consensus       187 ~~~~----~~~~~~----------------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~  222 (400)
T PRK11646        187 AYKL----STVRTP----------------------------------------VREGMTRVLRDKRFVTYVLTLTGYYM  222 (400)
T ss_pred             cccc----cccchh----------------------------------------hHHHHHHHHcCchHHHHHHHHHHHHH
Confidence            4210    000000                                        01245677788776544333322222


Q ss_pred             HHHHHHHhHHhhccCCCccHHHHHHH---HHHHhHhHHHHHHHHH-hhcCCchHHHHHHHHHHHHHHHHHhcCCchHHHH
Q 039541          340 GIGVVYFGLLLGVGNLSFNIYLSLAF---NGLLDIPAYLLTFILI-ERWSRKSSILTFCILSGTCSAICVAIGDEQEVLQ  415 (521)
Q Consensus       340 ~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~g~l~-dr~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~  415 (521)
                      .........|.+.++.+.+.......   .++....+....+++. ||++.++.+..+..+.+++.+.+...++.  +..
T Consensus       223 ~~~~~~~~~p~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~l~~~~~~--~~~  300 (400)
T PRK11646        223 LAVQVMLMLPIMVNDIAGSPSAVKWMYAIEACLSLTLLYPIARWSEKRFRLEHRLMAGLLIMSLSMFPIGMVSNL--QQL  300 (400)
T ss_pred             HHHHHHHhhhhhHHhhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHhhhH--HHH
Confidence            22222234566666544443333222   2333333333334444 55666666677777777776655544332  334


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhccccCchhhhhhhHHHHHhhhhhhhHHHHHHHhhcc-----c-hhHHHHHHHHHHHHH
Q 039541          416 IGLELASFFSACVAFNVLLVFGTELFTTCVRNSTTSLVRQAVNLGAAFSPVLISAGRQ-----N-EFLSFGVFGLVVFCF  489 (521)
Q Consensus       416 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~p~~~~~~~~-----~-~~~~~~~~~~~~~~~  489 (521)
                      .+..++.+.+.+...+...++..+..|++.||++.|+.+....+|..++|.+.|...+     + ....+.+.+++.+++
T Consensus       301 ~~~~~l~~~g~~~~~p~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~ig~~l~G~l~~~~~~~~~~~~~~~~~~~~~~~~  380 (400)
T PRK11646        301 FTLICLFYIGSIIAEPARETLSASLADARARGSYMGFSRLGLALGGAIGYIGGGWLFDLGKALNQPELPWMMLGIIGLIT  380 (400)
T ss_pred             HHHHHHHHHHHHHHHccHHHHHHhcCCcccchhhhhHHHHHHHHHHHhcccchHHHHHHHhhcCCcchHHHHHHHHHHHH
Confidence            4445566667777778888999999999999999999999999999999999986321     1 244555555555554


Q ss_pred             hHh
Q 039541          490 GFF  492 (521)
Q Consensus       490 ~~~  492 (521)
                      .+.
T Consensus       381 ~~~  383 (400)
T PRK11646        381 LLA  383 (400)
T ss_pred             HHH
Confidence            433

>TIGR00883 2A0106 metabolite-proton symporter

Probab=99.97  E-value=3.2e-28  Score=239.81  Aligned_cols=325  Identities=18%  Similarity=0.198  Sum_probs=221.3

Q ss_pred             CcceeeecceeeCCccccchhhHH-----HHHHHHHHhhhhhhhccccCCCCchHHHHHHHHHHHHHHHHHhccccHH--
Q 039541          101 DTTIISDWSLECAGSSILSGLPSS-----CFFIGCLLGGLALSTLGDSSSLGRKKLLFLSCFAMSITALATIFANNIW--  173 (521)
Q Consensus       101 ~~~i~~~~~~~~~~~~~~~~~~~s-----~~~lg~~i~~~~~g~l~dr~~~Grr~~l~~~~~~~~~~~~~~~~~~~~~--  173 (521)
                      .+.+.+++..+.++  .+.+.+.+     ..+++..+++++.|+++||  +|||++++.+.++.+++.++++++++++  
T Consensus        16 ~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~i~~~~~G~l~dr--~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~   91 (394)
T TIGR00883        16 AVLVFHTFFPPSGD--PLVALLATFATFAAGFLARPLGAIVFGHFGDR--IGRKKTLVITLLMMGIGTLLIGLLPSYATI   91 (394)
T ss_pred             HHHHHHHhcCCCCC--hHHHHHHHHHHHHHHHHHhhhHHHHhhhhhhh--hhhHHHHHHHHHHHHHHHHHHhhCCChhhh
Confidence            55666665432111  11244333     3334445789999999999  9999999999999999999999999875  


Q ss_pred             ------HHHHHHHHhhccchhhHhhhhhheeeeecCcchhHHHHHHHHHHHHHHHHHHHHHHhh---------cCCchhH
Q 039541          174 ------IYSTIRFVAGFFRAPIMTSVIVLLSEMVSKRWRGQVVIIGFTFFSFGLVSLPAVAYLS---------RGSSWKM  238 (521)
Q Consensus       174 ------~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~rg~~~~~~~~~~~~G~~i~~~i~~~~---------~~~~wr~  238 (521)
                            .+++.|+++|++.+...+...+++.|++|+++|+++.++.+.+..+|.++++.++...         ..++||+
T Consensus        92 ~~~~~~~~~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~G~~i~~~~~~~~~~~~~~~~~~~~~w~~  171 (394)
T TIGR00883        92 GIWAPILLLLARLIQGFSLGGEWGGAALYLAEYAPPGKRGFYGSFQQVGAPVGLLLAALTVLLLSYLLGDDALLEWGWRI  171 (394)
T ss_pred             HHHHHHHHHHHHHHHHhhccccccccHHHhhhcCCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHhhccchHH
Confidence                  5889999999999999999999999999999999999999999999999998874322         3579999


Q ss_pred             HHHHHHHHHHHHHhhhceeeecchhHHHhcCCHHHHHHHHHHHhhhcCCCCCCCccccccCCCCCccccCCCcccccccH
Q 039541          239 LYVWTSIPSIVCCIIIYPFISESPRWLFIHGHEAEAMAVLKRLASRSNYQSDYGLESCCLSNMPPKAKNVIPKLDLYSSL  318 (521)
Q Consensus       239 ~f~~~~~~~~~~~~~~~~~~~esp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  318 (521)
                      .|++.+++.++.. +....+||+|++...++             + .+                          +...+.
T Consensus       172 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~-------------~-~~--------------------------~~~~~~  210 (394)
T TIGR00883       172 PFLVSAVLVLIGL-YLRRNLEETPVFEKAQE-------------K-HK--------------------------KKRGPI  210 (394)
T ss_pred             HHHHHHHHHHHHH-HHHHhcCCChhHHHHHh-------------c-cc--------------------------cccCCH
Confidence            9998877766655 44455666653211000             0 00                          001245


Q ss_pred             HHHhccHH--HHHHHHHHHHHHHHHHHHHHhHHhhc-cCCCccHH---HHHHHHHHHhHhHHHHHHHHHhhcCCchHHHH
Q 039541          319 KDLFNRKW--ALRRLLTIMALAFGIGVVYFGLLLGV-GNLSFNIY---LSLAFNGLLDIPAYLLTFILIERWSRKSSILT  392 (521)
Q Consensus       319 ~~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~---~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~  392 (521)
                      ++.+++++  ++......+.............|.+. ++.+.+..   .......+..+++.++.+++.||+|||+.+..
T Consensus       211 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~  290 (394)
T TIGR00883       211 RETLTKHRKPFLLGLGLVIATTTTFYLITTYLPTYLTQTLGLSANSALLVLMLSLILFFITIPLSGALSDRIGRRPVLII  290 (394)
T ss_pred             HHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHH
Confidence            56666554  33323232233333333333344444 44444432   33344567778889999999999999997775


Q ss_pred             HHHHHHHHH-HHH-HhcCCchHHHHHHHHHHHHHHHHHHHHHHHHhhccccCchhhhhhhHHHH-HhhhhhhhHHHHHHH
Q 039541          393 FCILSGTCS-AIC-VAIGDEQEVLQIGLELASFFSACVAFNVLLVFGTELFTTCVRNSTTSLVR-QAVNLGAAFSPVLIS  469 (521)
Q Consensus       393 ~~~~~~i~~-~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~-~~~~~g~~~~p~~~~  469 (521)
                      ...+..+.. ..+ ........+......++.+++.+...+....+..|.+|++.|+++.++.. ....+|..++|.+.|
T Consensus       291 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~g~~~~p~~~g  370 (394)
T TIGR00883       291 FTVLAALLAVPLLMALLDSGSFTLFFFLVLGLALIGGMYTGPMGSFLPELFPTEVRYTGASLAYNLAGAIFGGFAPYIAA  370 (394)
T ss_pred             HHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHhhhHHHHHHHhCCccceeeEeeehhHhHHHHHhhHHHHHHH
Confidence            554443332 222 22222222444555667777777888899999999999999999999854 445678889999998


Q ss_pred             h
Q 039541          470 A  470 (521)
Q Consensus       470 ~  470 (521)
                      .
T Consensus       371 ~  371 (394)
T TIGR00883       371 A  371 (394)
T ss_pred             H
Confidence            6

This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc.

>cd06174 MFS The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters

Probab=99.96  E-value=7.2e-28  Score=233.40  Aligned_cols=321  Identities=22%  Similarity=0.317  Sum_probs=263.3

Q ss_pred             CcceeeecceeeCCccccchhhHHHHHHHHHHhhhhhhhccccCCCCchHHHHHHHHHHHHHHHHHhccccHHHHHHHHH
Q 039541          101 DTTIISDWSLECAGSSILSGLPSSCFFIGCLLGGLALSTLGDSSSLGRKKLLFLSCFAMSITALATIFANNIWIYSTIRF  180 (521)
Q Consensus       101 ~~~i~~~~~~~~~~~~~~~~~~~s~~~lg~~i~~~~~g~l~dr~~~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~  180 (521)
                      .|.+.+++|.+.++.    +++.+.+.++..+++++.|+++||  +|||+.+.++..+..++.++..++++++.+++.|+
T Consensus        22 ~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~g~~~d~--~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   95 (352)
T cd06174          22 LPLLAEDLGLSASQA----GLIVSAFSLGYALGSLLAGYLSDR--FGRRRVLLLGLLLFALGSLLLAFASSLWLLLVGRF   95 (352)
T ss_pred             HHHHHHHcCCCHHHH----HHHHHHHHHHHHHHHHhHHHHHHH--hCCchhhHHHHHHHHHHHHHHHHhccHHHHHHHHH
Confidence            788888899888666    999999999999999999999999  99999999999999999999999999999999999


Q ss_pred             HhhccchhhHhhhhhheeeeecCcchhHHHHHHHHHHHHHHHHHHHH-HHhhcCCchhHHHHHHHHHHHHHHhhhceeee
Q 039541          181 VAGFFRAPIMTSVIVLLSEMVSKRWRGQVVIIGFTFFSFGLVSLPAV-AYLSRGSSWKMLYVWTSIPSIVCCIIIYPFIS  259 (521)
Q Consensus       181 l~G~~~g~~~~~~~~~i~~~~~~~~rg~~~~~~~~~~~~G~~i~~~i-~~~~~~~~wr~~f~~~~~~~~~~~~~~~~~~~  259 (521)
                      +.|++.+...+...+++.|++|+++|++++++......+|..++|.+ +.+.+..+||+.+++.+++.++..++. .+++
T Consensus        96 l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~  174 (352)
T cd06174          96 LLGLGGGALYPAAAALIAEWFPPKERGRALGLFSAGFGLGALLGPLLGGLLAESLGWRWLFLILAILGLLLALLL-LFLL  174 (352)
T ss_pred             HHHcccccccHhHHHHHHHhCCccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH-HHHH
Confidence            99999999999999999999999999999999999999999999998 667777789999999888877766332 2221


Q ss_pred             cchhHHHhcCCHHHHHHHHHHHhhhcCCCCCCCccccccCCCCCccccCCCcccccccHHHHhccHHHHHHHHHHHHHHH
Q 039541          260 ESPRWLFIHGHEAEAMAVLKRLASRSNYQSDYGLESCCLSNMPPKAKNVIPKLDLYSSLKDLFNRKWALRRLLTIMALAF  339 (521)
Q Consensus       260 esp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~  339 (521)
                                                                                       |.++...+.......
T Consensus       175 -----------------------------------------------------------------~~~~~~~~~~~~~~~  189 (352)
T cd06174         175 -----------------------------------------------------------------RLLLLLALAFFLLSF  189 (352)
T ss_pred             -----------------------------------------------------------------HHHHHHHHHHHHHHh
Confidence                                                                             122233333334444


Q ss_pred             HHHHHHHhHHhhccCC-CccH---HHHHHHHHHHhHhHHHHHHHHHhhcCCch-HHHHHHHHHHHHHHHHHhcCCchHHH
Q 039541          340 GIGVVYFGLLLGVGNL-SFNI---YLSLAFNGLLDIPAYLLTFILIERWSRKS-SILTFCILSGTCSAICVAIGDEQEVL  414 (521)
Q Consensus       340 ~~~~~~~~~~~~~~~~-~~~~---~~~~~~~~~~~~~~~~~~g~l~dr~g~~~-~~~~~~~~~~i~~~~~~~~~~~~~~~  414 (521)
                      .........+.+.++. +.+.   ........++.+++.++.+++.||++||+ .+..+..+..++.+.+....+.  +.
T Consensus       190 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~--~~  267 (352)
T cd06174         190 GYYGLLTYLPLYLQEVLGLSAAEAGLLLSLFGLGGILGALLGGLLSDRLGRRRLLLLIGLLLAALGLLLLALAPSL--AL  267 (352)
T ss_pred             HHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhccH--HH
Confidence            4444444444444443 4333   34445666788899999999999999999 9999988888888877765543  56


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhccccCchhhhhhhHHHHHhhhhhhhHHHHHHHhh--ccchhHHHHHHHHHHHHHhHh
Q 039541          415 QIGLELASFFSACVAFNVLLVFGTELFTTCVRNSTTSLVRQAVNLGAAFSPVLISAG--RQNEFLSFGVFGLVVFCFGFF  492 (521)
Q Consensus       415 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~p~~~~~~--~~~~~~~~~~~~~~~~~~~~~  492 (521)
                      ..+..++.+++.+...+....+..|..|++.|++..|+.+....+|..++|.+.+..  ..++...+.+.+++.+++.+.
T Consensus       268 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~g~l~~~~~~~~~~~~~~~~~~i~~i~  347 (352)
T cd06174         268 LLVALLLLGFGLGFAFPALLTLASELAPPEARGTASGLFNTFGSLGGALGPLLAGLLLDTGGYGGVFLILAALALLAALL  347 (352)
T ss_pred             HHHHHHHHHHHHhccchhHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCcchHHHHHHHHHHHHHHH
Confidence            677888888998999999999999999999999999999999999999999999863  456777888888887777665


Q ss_pred             hhc
Q 039541          493 VVF  495 (521)
Q Consensus       493 ~~~  495 (521)
                      .+.
T Consensus       348 ~~~  350 (352)
T cd06174         348 LLL  350 (352)
T ss_pred             hee
Confidence            544

MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3

>PRK10054 putative transporter; Provisional

Probab=99.96  E-value=1.3e-27  Score=234.10  Aligned_cols=336  Identities=13%  Similarity=0.057  Sum_probs=240.9

Q ss_pred             CcceeeecceeeCCccccchhhHHHHHHHHHHhhhhhhhccccCCCCchHHHHHHHHHHHHHHHHHhccccHHHHHHHHH
Q 039541          101 DTTIISDWSLECAGSSILSGLPSSCFFIGCLLGGLALSTLGDSSSLGRKKLLFLSCFAMSITALATIFANNIWIYSTIRF  180 (521)
Q Consensus       101 ~~~i~~~~~~~~~~~~~~~~~~~s~~~lg~~i~~~~~g~l~dr~~~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~  180 (521)
                      .+.+++++|++..+.    |++.+.+.++..+++++.|+++||  +|||++++++.++.+++.++.+++++++.+++.|+
T Consensus        31 ~~~l~~~~g~s~~~~----g~~~s~~~~~~~~~~~~~G~l~Dr--~g~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  104 (395)
T PRK10054         31 TIYLSRQYSLSVDLI----GYAMTIALTIGVVFSLGFGILADK--FDKKRYMLLAITAFASGFIAIPLVNNVTLVVLFFA  104 (395)
T ss_pred             HHHHHHHcCCCHHHH----HHHHHHHHHHHHHHHHHHHHHHhh--cCcchhHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence            345678899999666    999999999999999999999999  99999999999999999999999999999999999


Q ss_pred             HhhccchhhHhhhhhheeeeecCcchhHHHHHHHHHHHHHHHHHHHHHHhhcCCchhHHHHHHHHHHHHHHhhhceeeec
Q 039541          181 VAGFFRAPIMTSVIVLLSEMVSKRWRGQVVIIGFTFFSFGLVSLPAVAYLSRGSSWKMLYVWTSIPSIVCCIIIYPFISE  260 (521)
Q Consensus       181 l~G~~~g~~~~~~~~~i~~~~~~~~rg~~~~~~~~~~~~G~~i~~~i~~~~~~~~wr~~f~~~~~~~~~~~~~~~~~~~e  260 (521)
                      +.|.+.+...+...++..|..|+++|++++++.....++|.+++|.++..+...+|+.+|++.++..++..++..+++||
T Consensus       105 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~lg~~igp~l~~~l~~~g~~~~f~~~~~~~~i~~i~~~~~~~~  184 (395)
T PRK10054        105 LINCAYSVFSTVLKAWFADNLSSTSKTKIFSLNYTMLNIGWTVGPPLGTLLVMQSINLPFWLAAICSAFPLVFIQIWVQR  184 (395)
T ss_pred             HHHHHHHHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHHHHhc
Confidence            99988888888899999999999999999999999999999999999544435799999999888777765455455555


Q ss_pred             chhHHHhcCCHHHHHHHHHHHhhhcCCCCCCCccccccCCCCCccccCCCcccccccHHHHhccHHHHHHHHHHHHHHHH
Q 039541          261 SPRWLFIHGHEAEAMAVLKRLASRSNYQSDYGLESCCLSNMPPKAKNVIPKLDLYSSLKDLFNRKWALRRLLTIMALAFG  340 (521)
Q Consensus       261 sp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~  340 (521)
                      +++.    ++.++ ++                                      ..+.++++++|.++...+..++..+.
T Consensus       185 ~~~~----~~~~~-~~--------------------------------------~~~~~~~~~~~~~~~~~~~~~l~~~~  221 (395)
T PRK10054        185 SEKA----IATET-GS--------------------------------------VWSPSVLLQDKALLWFTCSGFLASFV  221 (395)
T ss_pred             cccc----cccch-hh--------------------------------------hhhhhhhccCceehHHHHHHHHHHHH
Confidence            4210    00000 00                                      01234567777766655554444443


Q ss_pred             HHHHHHhHHhhc---cCCCccHHHH---HHHHHHHhHhHHHHHHHHHhhcCCchHHHHHHHHHHHHHHHHHhcCCchHHH
Q 039541          341 IGVVYFGLLLGV---GNLSFNIYLS---LAFNGLLDIPAYLLTFILIERWSRKSSILTFCILSGTCSAICVAIGDEQEVL  414 (521)
Q Consensus       341 ~~~~~~~~~~~~---~~~~~~~~~~---~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~  414 (521)
                      ........+.+.   .+.+.+....   ....++.........+++.||.++|+.+..+..+..++...+.+..+ +.+.
T Consensus       222 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~-~~~~  300 (395)
T PRK10054        222 SGAFASCISQYVMVVADSDFAEKVVAVVLPVNAAMVVSLQYSVGRRLNAANIRPLMTAGTLCFVIGLVGFIFSGN-SLLL  300 (395)
T ss_pred             HHHhhhhHHHHHHHhcccchHHHHHHHHHHhhhhheeeehhHHHHHHccCCchhHHHHHHHHHHHHHHHHHHcch-HHHH
Confidence            322111112221   2333333222   22233344455677889999999999988888777777666654322 2234


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhccccCchhhhhhhHHHHHhhhhhhhHHHHHHHhh--ccchhHHHHHHHHHHH
Q 039541          415 QIGLELASFFSACVAFNVLLVFGTELFTTCVRNSTTSLVRQAVNLGAAFSPVLISAG--RQNEFLSFGVFGLVVF  487 (521)
Q Consensus       415 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~p~~~~~~--~~~~~~~~~~~~~~~~  487 (521)
                      ..+..++.+++.....+.....+.+..|++.|+++.+..+ ...+|..++|.+.|..  ..++...+.+.+....
T Consensus       301 ~~~~~~~~~~g~~~~~p~~~~~~~~~~p~~~~~~~~~~~~-~~~~G~~~Gp~~~G~l~~~~g~~~~~~~~~~~~~  374 (395)
T PRK10054        301 WGMSAAVFTVGEIIYAPGEYMLIDHIAPPGMKASYFSAQS-LGWLGAAINPLVSGVILTTLPPWSLFVILALAIV  374 (395)
T ss_pred             HHHHHHHHHHHHHHHHhhHHHHHHHhCCcccceehHhHHH-HHHHHHHHHHHHHHHHHHHcChhhHHHHHHHHHH
Confidence            4556677777777777888889999999999999988655 5678999999999863  3344445544444333

>PRK11010 ampG muropeptide transporter; Validated

Probab=99.96  E-value=5e-27  Score=235.55  Aligned_cols=351  Identities=15%  Similarity=0.110  Sum_probs=241.9

Q ss_pred             CcceeeecceeeCCccccchhhHHHHHHHHHHhhhhhhhccccCCC-----CchHH-HHHHHHHHHHHHHHHhcc---cc
Q 039541          101 DTTIISDWSLECAGSSILSGLPSSCFFIGCLLGGLALSTLGDSSSL-----GRKKL-LFLSCFAMSITALATIFA---NN  171 (521)
Q Consensus       101 ~~~i~~~~~~~~~~~~~~~~~~~s~~~lg~~i~~~~~g~l~dr~~~-----Grr~~-l~~~~~~~~~~~~~~~~~---~~  171 (521)
                      +|...++.|.+.++.    |.+ +...+.+ ++.+++|+++||  +     |||+. ++.+.+..+++..++++.   ++
T Consensus        35 l~~~l~~~g~~~~~i----g~~-~~~~~~~-~~~~l~gpl~Dr--~~~~~~Grrr~~ll~~~i~~~~~~~~~a~~~~~~~  106 (491)
T PRK11010         35 LQAWMTVENIDLKTI----GFF-SLVGQAY-VFKFLWSPLMDR--YTPPFLGRRRGWLLATQLLLLVAIAAMGFLEPGTQ  106 (491)
T ss_pred             HHHHHHhCCCCHHHH----HHH-HHHHHHH-HHHHHHHHHHHc--ccccCCCCchHHHHHHHHHHHHHHHHHHHcCCcch
Confidence            677778888887555    665 3333333 688999999999  8     99986 667777777777777775   47


Q ss_pred             HHHHHHHHHHhhccchhhHhhhhhheeeeecCcchhHHHHHHHHHHHHHHHHHHHH-HHhhc-CCchhHHHHHHHHHHHH
Q 039541          172 IWIYSTIRFVAGFFRAPIMTSVIVLLSEMVSKRWRGQVVIIGFTFFSFGLVSLPAV-AYLSR-GSSWKMLYVWTSIPSIV  249 (521)
Q Consensus       172 ~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~rg~~~~~~~~~~~~G~~i~~~i-~~~~~-~~~wr~~f~~~~~~~~~  249 (521)
                      ++.+.+.+++.|++.+...+...+++.|++|+++|+++.++...+..+|.++++.+ +.+.+ ..|||..|++.+++.++
T Consensus       107 l~~l~~~~~l~~~~~a~~~i~~~a~~~~~~~~~~rg~~~~i~~~g~~lG~llg~~l~~~l~~~~~GWr~~f~i~a~l~ll  186 (491)
T PRK11010        107 LRWLAALAVVIAFCSASQDIVFDAWKTDVLPAEERGAGAAISVLGYRLAMLVSGGLALWLADRYLGWQGMYWLMAALLIP  186 (491)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHH
Confidence            88999999999999999999999999999999999999999999999999999888 55666 46999999999988777


Q ss_pred             HHhhhceeeecchhHHHhcCCHHHHHHHHHHHhhhcCCCCCCCccccccCCCCCccccCCCcccccccHHHHhccHHHHH
Q 039541          250 CCIIIYPFISESPRWLFIHGHEAEAMAVLKRLASRSNYQSDYGLESCCLSNMPPKAKNVIPKLDLYSSLKDLFNRKWALR  329 (521)
Q Consensus       250 ~~~~~~~~~~esp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~  329 (521)
                      .. +..+++||+++..   .+.++.+                                    .....+++++++++..+.
T Consensus       187 ~~-l~~~~~~e~~~~~---~~~~~~~------------------------------------~~~~~~l~~~~~~~~~~~  226 (491)
T PRK11010        187 CI-IATLLAPEPTDTI---PVPKTLE------------------------------------QAVVAPLRDFFGRNNAWL  226 (491)
T ss_pred             HH-HHHHhcCCCcccc---ccccchh------------------------------------hhHHHHHHHHHcCcCHHH
Confidence            76 4444578764310   0000000                                    000124666777776554


Q ss_pred             HHHHHHHHHHHHHHHH-HhHHhhccCCCccHHHHHH----HHHHHhHhHHHHHHHHHhhcCCchHHHHHHHHHHHHHHHH
Q 039541          330 RLLTIMALAFGIGVVY-FGLLLGVGNLSFNIYLSLA----FNGLLDIPAYLLTFILIERWSRKSSILTFCILSGTCSAIC  404 (521)
Q Consensus       330 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~i~~~~~  404 (521)
                      ..+..+.........+ +..+++.++.|.+......    ...++.++|.+++|+++||+++|+.+.++.++.++..+.+
T Consensus       227 ~ll~~~l~~~~~~~~~~~~~~~l~~~~G~s~~~~g~~~~~~g~i~~iiG~ll~G~L~dr~g~~~~l~i~~~l~~l~~l~~  306 (491)
T PRK11010        227 ILLLIVLYKLGDAFAMSLTTTFLIRGVGFDAGEVGLVNKTLGLLATIVGALYGGILMQRLSLFRALMIFGILQGVSNAGY  306 (491)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence            4444444333333333 3344444556665544332    2235778899999999999999887776665555443332


Q ss_pred             Hh--cCCchHHHHHHHHHHHHHHHHHHHHHHHHhhccccCchhhhhhhHHHHHhhhhhhhHHHHHHHh--hccchhHHHH
Q 039541          405 VA--IGDEQEVLQIGLELASFFSACVAFNVLLVFGTELFTTCVRNSTTSLVRQAVNLGAAFSPVLISA--GRQNEFLSFG  480 (521)
Q Consensus       405 ~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~p~~~~~--~~~~~~~~~~  480 (521)
                      ..  ....+.+...+..++..++.+...+..+++..+..+++.+++..|+.+....+|..+++.+.|.  ...++...|.
T Consensus       307 ~~l~~~~~~~~~l~~~~~l~~~~~g~~~~~~~a~~~~l~~~~~~~t~~gl~~s~~~lg~~~~~~~~G~l~~~~G~~~~f~  386 (491)
T PRK11010        307 WLLSITDKNLYSMGAAVFFENLCGGMGTAAFVALLMTLCNKSFSATQFALLSALSAVGRVYVGPVAGWFVEAHGWPTFYL  386 (491)
T ss_pred             HHHHhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHH
Confidence            21  1111212333344454445555566677888888888888999999999999998877777775  3346777788


Q ss_pred             HHHHHHHHHhHhhhccccC
Q 039541          481 VFGLVVFCFGFFVVFLPET  499 (521)
Q Consensus       481 ~~~~~~~~~~~~~~~~~~~  499 (521)
                      +.+++++++.+....++++
T Consensus       387 ~~~~~~l~~l~~~~~~~~~  405 (491)
T PRK11010        387 FSVAAAVPGLLLLLVCRQT  405 (491)
T ss_pred             HHHHHHHHHHHHHHHHHhc
Confidence            7888887777666655543

>TIGR00886 2A0108 nitrite extrusion protein (nitrite facilitator)

Probab=99.96  E-value=1.4e-27  Score=232.79  Aligned_cols=323  Identities=15%  Similarity=0.082  Sum_probs=221.9

Q ss_pred             Ccc-eeeecceeeCCccccchhhHHHHHHHHHHhhhhhhhccccCCCCchHHHHHHHHHHHHHHHHHhccc-cHHHHHHH
Q 039541          101 DTT-IISDWSLECAGSSILSGLPSSCFFIGCLLGGLALSTLGDSSSLGRKKLLFLSCFAMSITALATIFAN-NIWIYSTI  178 (521)
Q Consensus       101 ~~~-i~~~~~~~~~~~~~~~~~~~s~~~lg~~i~~~~~g~l~dr~~~Grr~~l~~~~~~~~~~~~~~~~~~-~~~~l~~~  178 (521)
                      .|. +++++|++..+.    +++.+++.++..+++++.|+++||  +|||++++++.++.+++.+++++++ +++.+++.
T Consensus        24 ~~~~~~~~~~~s~~~~----~~~~~~~~~~~~~~~~~~g~l~dr--~g~r~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~   97 (366)
T TIGR00886        24 AVQMIKDDLGLSTAQL----GNLVAVPVLAGAVLRIILGFLVDK--FGPRYTTTLSLLLLAIPCLWAGLAVQSYSVLLLL   97 (366)
T ss_pred             hhHHHHHHhCCCHHHh----hHhhHHHHHHHHHHHHHHHHHHHH--hCchHHHHHHHHHHHHHHHHHHHHhhhHHHHHHH
Confidence            785 999999999777    999999999999999999999999  9999999999999999999999999 99999999


Q ss_pred             HHHhhccchhhHhhhhhheeeeecCcchhHHHHHHHHHHHHHHHHHHHHH-Hhhc----------CCchhHHH-HHHHHH
Q 039541          179 RFVAGFFRAPIMTSVIVLLSEMVSKRWRGQVVIIGFTFFSFGLVSLPAVA-YLSR----------GSSWKMLY-VWTSIP  246 (521)
Q Consensus       179 r~l~G~~~g~~~~~~~~~i~~~~~~~~rg~~~~~~~~~~~~G~~i~~~i~-~~~~----------~~~wr~~f-~~~~~~  246 (521)
                      |+++|++.+ ..+....++.|++|+++|++++++......+|..+++.++ .+..          ..+||+.| +..+++
T Consensus        98 ~~~~g~~~~-~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~l~~~~~~~~~~~~~~~w~~~~~~~~~~~  176 (366)
T TIGR00886        98 RLFIGIAGG-SFASCMPWISFFFPKKIQGTALGLAAGWGNMGGGVAQFVMPPIIGSLIFGAGLPAHLAWGWAFVIVPAGI  176 (366)
T ss_pred             HHHHHHhch-hhHhHHHHHHHhcCHhhhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhcccccccccccchhHHHHHHH
Confidence            999999966 4566788999999999999999999877777777766653 2221          34899999 444555


Q ss_pred             HHHHHhhhceeeecchhHHHhcCCHHHHHHHHHHHhhhcCCCCCCCccccccCCCCCccccCCCcccccccHHHHhccHH
Q 039541          247 SIVCCIIIYPFISESPRWLFIHGHEAEAMAVLKRLASRSNYQSDYGLESCCLSNMPPKAKNVIPKLDLYSSLKDLFNRKW  326 (521)
Q Consensus       247 ~~~~~~~~~~~~~esp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~  326 (521)
                      ..+..++.+.+.+|+|+.     +.++.+.      + ....      .       ..     ...+.....++.+++++
T Consensus       177 ~~~~~~~~~~~~~~~~~~-----~~~~~~~------~-~~~~------~-------~~-----~~~~~~~~~~~~~~~~~  226 (366)
T TIGR00886       177 LLLPALLIFFVGADTPPG-----KPATGKL------S-FKGA------R-------WS-----VGTGALGDQLKVFRDRH  226 (366)
T ss_pred             HHHHHHHHHHhcccCCcc-----cccchhc------c-cccc------c-------cc-----ccchhHHHHHHHHhccc
Confidence            555444555566766531     0000000      0 0000      0       00     00000114566777777


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhHHhhcc-CCCccHHH---HHHHHHHHhHhHHHHHHHHHhhcCCchHHHHHHHHHHHHHH
Q 039541          327 ALRRLLTIMALAFGIGVVYFGLLLGVG-NLSFNIYL---SLAFNGLLDIPAYLLTFILIERWSRKSSILTFCILSGTCSA  402 (521)
Q Consensus       327 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~---~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~i~~~  402 (521)
                      ++...+................+.+++ ..+.+...   ......+..+++.++.+++.||+|+|+.+..+......+..
T Consensus       227 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~~~~~~~~~~~  306 (366)
T TIGR00886       227 TWILALLYSVTFGSFLGVSSIFAMFFKDQFGLSKVTAGAYASLGGLLGSLARPLGGAISDRLGGARKLLMSFLGVAMGAF  306 (366)
T ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHhhccchHHHhhccchhHHHHHHHHHHHHH
Confidence            655544444333333233333344443 34544433   33445567788899999999999998887777766666555


Q ss_pred             HHHhcCCc--hHHHHHHHHHHHHHHHHHHHHHHHHhhccccCchhhhhhhHHHHHhhhhhh
Q 039541          403 ICVAIGDE--QEVLQIGLELASFFSACVAFNVLLVFGTELFTTCVRNSTTSLVRQAVNLGA  461 (521)
Q Consensus       403 ~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~  461 (521)
                      ++......  +.+...+...+..++.+...+..+.+..+..| +++|+++|+.+..+++|+
T Consensus       307 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~-~~~g~~~g~~~~~~~~g~  366 (366)
T TIGR00886       307 LVVLGLVSPLSLAVFIVLFVALFFFSGAGNGSTFALVPHIFR-RATGAVSGLVGAIGNLGG  366 (366)
T ss_pred             HHHhcCCCcchHHHHHHHHHHHHHHhccccchhhhcchhhch-hhcccHHHHHHHhccCCC
Confidence            55443332  22344445555556666666777888888887 578999999999887764

>TIGR00902 2A0127 phenyl proprionate permease family protein

Probab=99.96  E-value=1.7e-26  Score=225.76  Aligned_cols=339  Identities=13%  Similarity=-0.004  Sum_probs=248.1

Q ss_pred             CcceeeecceeeCCccccchhhHHHHHHHHHHhhhhhhhccccCCCCchHHH----HHHHHHHHHHHHHHhccccHHHHH
Q 039541          101 DTTIISDWSLECAGSSILSGLPSSCFFIGCLLGGLALSTLGDSSSLGRKKLL----FLSCFAMSITALATIFANNIWIYS  176 (521)
Q Consensus       101 ~~~i~~~~~~~~~~~~~~~~~~~s~~~lg~~i~~~~~g~l~dr~~~Grr~~l----~~~~~~~~~~~~~~~~~~~~~~l~  176 (521)
                      +|.+.+++|.+.++.    |++.+.+.+...++++++|+++||  +|||+..    ..+..+..+  ..+..+++++.++
T Consensus        27 l~~~l~~~g~s~~~i----g~~~s~~~~~~~~~~~~~g~l~d~--~~~~~~~~~~~~~~~~l~~~--~~~~~~~~~~~l~   98 (382)
T TIGR00902        27 FPAWLKGIGLGEEMI----GLLIGAALIARFAGGLFFAPLIKD--ANHIIIALRLLALASAIFAA--AFSAGAHNAWLLF   98 (382)
T ss_pred             HHHHHHHcCCCHHHH----HHHHHHHHHHHHHHHHHHHHHHHh--cCcHHHHHHHHHHHHHHHHH--HHHHhhhhHHHHH
Confidence            688889999999666    999999999999999999999999  9985433    222222222  2445778999999


Q ss_pred             HHHHHhhccchhhHhhhhhheeeeecCcchhHHHHHHHHHHHHHHHHHHHH-HHhhcCCchhHHHHHHHHHHHHHHhhhc
Q 039541          177 TIRFVAGFFRAPIMTSVIVLLSEMVSKRWRGQVVIIGFTFFSFGLVSLPAV-AYLSRGSSWKMLYVWTSIPSIVCCIIIY  255 (521)
Q Consensus       177 ~~r~l~G~~~g~~~~~~~~~i~~~~~~~~rg~~~~~~~~~~~~G~~i~~~i-~~~~~~~~wr~~f~~~~~~~~~~~~~~~  255 (521)
                      +.|+++|.+.+...|...+++.++  +++|+++.+....+.++|.+++|.+ +.+.+.+|||..|++.++..++.. +..
T Consensus        99 ~~~~l~~~~~~~~~p~~~al~~~~--~~~~~~~~g~~~~~~slG~~~g~~l~g~l~~~~g~~~~f~~~~~~~~~~~-~~~  175 (382)
T TIGR00902        99 IAIGLFALFFSAGMPIGDALANTW--QKQFGLDYGKVRLIGSAAFIIGSALFGGLIGMFDEQNILAILTAGLAFML-IGF  175 (382)
T ss_pred             HHHHHHHHHHccchhHHHHHHHHH--HHHcCCCccHHHHHHHHHHHHHHHHHHHHHHHcChhHHHHHHHHHHHHHH-HHH
Confidence            999999999888888888887654  4788999999999999999999988 788888899999988765533333 332


Q ss_pred             eeeecchhHHHhcCCHHHHHHHHHHHhhhcCCCCCCCccccccCCCCCccccCCCcccccccHHHHhccHHHHHHHHHHH
Q 039541          256 PFISESPRWLFIHGHEAEAMAVLKRLASRSNYQSDYGLESCCLSNMPPKAKNVIPKLDLYSSLKDLFNRKWALRRLLTIM  335 (521)
Q Consensus       256 ~~~~esp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~  335 (521)
                       .++|+++    +++.++                              + ++    .+...+.++++|+|+++...+..+
T Consensus       176 -~~~~~~~----~~~~~~------------------------------~-~~----~~~~~~~~~~l~~~~~~~~l~~~~  215 (382)
T TIGR00902       176 -LIKPTIP----PKDAIP------------------------------E-DE----SQGDSAFIALLKNPMNLRFLAAVC  215 (382)
T ss_pred             -HcCCCCC----CCcccc------------------------------c-cc----cccchhHHHHHcChHHHHHHHHHH
Confidence             3333221    000000                              0 00    000125678899998887777666


Q ss_pred             HHHHHHHHHHHhHHhhccCCCccHHHHH---HHHHHHhHhHHHHHHHHHhhcCCchHHHHHHHHHHHHHHHHHhcCCchH
Q 039541          336 ALAFGIGVVYFGLLLGVGNLSFNIYLSL---AFNGLLDIPAYLLTFILIERWSRKSSILTFCILSGTCSAICVAIGDEQE  412 (521)
Q Consensus       336 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~i~~~~~~~~~~~~~  412 (521)
                      +........+...+.++++.|.+....+   .+..+..+++.++.+++.||+|+|+.+.++.+..++....+.+.++.  
T Consensus       216 l~~~~~~~~~~~~~~~l~~~g~s~~~~g~l~~~~~~~~i~~~~~~~~l~~r~g~~~~l~~~~~~~~~~~~~~~~~~~~--  293 (382)
T TIGR00902       216 LIQGAHAAYYGFSAIYWQAAGISASATGLLWGIGVLAEIIIFAFSNKLFQNCSARDLLLISAIACVGRWAIIGAIEAF--  293 (382)
T ss_pred             HHHHHHHHHHHHHHHHHHHCCCCHhHHHHHHHHHHHHHHHHHHHhHHHHhhCCHHHHHHHHHHHHHHHHHHHHhHhhH--
Confidence            6666655555455666677776654433   34456677888889999999999999999999999888777664433  


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhccccCchhhhhhhHHHHH-hhhhhhhHHHHHHHhhccc-hhHHHHHHHHHHHHHh
Q 039541          413 VLQIGLELASFFSACVAFNVLLVFGTELFTTCVRNSTTSLVRQ-AVNLGAAFSPVLISAGRQN-EFLSFGVFGLVVFCFG  490 (521)
Q Consensus       413 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~-~~~~g~~~~p~~~~~~~~~-~~~~~~~~~~~~~~~~  490 (521)
                      +..+...++.++..+..++....++.+. |++.|+++.++.+. ...+|..++|.+.|+..+. ....|.+.+++.+++.
T Consensus       294 ~~~~~~q~l~g~~~~~~~~~~~~~i~~~-~~~~~~~~q~~~~~~~~g~g~~~g~~~~G~l~~~~g~~~~~~~~~~~~~~~  372 (382)
T TIGR00902       294 PLIFLLQILHCGTFAVCHLAAMRYIAAQ-PGSEIAKLQALYNALAMGGLIAIFTAFAGFIYPTLGAGTFVFMAIIAAAAF  372 (382)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhC-CHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHH
Confidence            5667778999999999999999999988 99999999999864 4578899999999873221 2345666666666554


Q ss_pred             Hhh
Q 039541          491 FFV  493 (521)
Q Consensus       491 ~~~  493 (521)
                      ++.
T Consensus       373 ~~~  375 (382)
T TIGR00902       373 FLI  375 (382)
T ss_pred             HHH
Confidence            443

This family of proteins is involved in the uptake of 3-phenylpropionic acid. This uptake mechanism is for the metabolism of phenylpropanoid compounds and plays an important role in the natural degradative cycle of these aromatic molecules.

>KOG2504 consensus Monocarboxylate transporter [Carbohydrate transport and metabolism]

Probab=99.96  E-value=6.2e-28  Score=238.45  Aligned_cols=414  Identities=16%  Similarity=0.094  Sum_probs=304.5

Q ss_pred             CChhHHHHHHHHHHHHHHHHHHHhhhhccccCCcccccCCcccccCCccccccccCcceecCCCCcceeeecceeeCCcc
Q 039541           37 LGLPQFIQVILISLLLIFESQQTFISVYTDEEPTWHCINNTTTCSSSSDICTLSKSAWAWDRPSDTTIISDWSLECAGSS  116 (521)
Q Consensus        37 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~p~~~c~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~i~~~~~~~~~~~~  116 (521)
                      -+.|.|.+++..++..+.........+..                                   .+.++++++-+.++. 
T Consensus        40 dGG~gWvV~~a~fl~~~~~~g~~~~~Gv~-----------------------------------~~~~~~~f~~s~~~~-   83 (509)
T KOG2504|consen   40 DGGWGWVVVFASFLVNLSTDGLINSFGLL-----------------------------------FEELMDYFGSSSSQI-   83 (509)
T ss_pred             CCCeeeeeeHhHHHHHHhhhcchheehhh-----------------------------------HHHHHHHhCCCccHH-
Confidence            56788888888888877766666666667                                   789999999999777 


Q ss_pred             ccchhhHHHHHHHHHHhhhhhhhccccCCCCchHHHHHHHHHHHHHHHHHhccccHHHHHHHH-HHhhccchhhHhhhhh
Q 039541          117 ILSGLPSSCFFIGCLLGGLALSTLGDSSSLGRKKLLFLSCFAMSITALATIFANNIWIYSTIR-FVAGFFRAPIMTSVIV  195 (521)
Q Consensus       117 ~~~~~~~s~~~lg~~i~~~~~g~l~dr~~~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r-~l~G~~~g~~~~~~~~  195 (521)
                         +|+.++..-...+..|+.+.+.||  ||.|++.+.|.++..+|.++.+|++++|++++.. ++.|+|.|..+.....
T Consensus        84 ---~~i~sl~~~~~~~~gpl~s~l~~r--fg~R~v~i~G~~v~~~g~~lssF~~~i~~l~lt~gvi~G~G~~~~~~paiv  158 (509)
T KOG2504|consen   84 ---AWIGSLLLGVYLLAGPLVSALCNR--FGCRTVMIAGGLVAALGLLLSSFATSLWQLYLTFGVIGGLGLGLIYLPAVV  158 (509)
T ss_pred             ---HHHHHHHHHHHHHhccHHHHHHhh--cCchHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhccchhhhcchhh
Confidence               999999999999999999999999  9999999999999999999999999999887764 9999999999999999


Q ss_pred             heeeeecCcchhHHHHHHHHHHHHHHHHHHHH-HHhhcCCchhHHHHHHHHHHHHHHhhhceeeecchhHHHhcCCHHHH
Q 039541          196 LLSEMVSKRWRGQVVIIGFTFFSFGLVSLPAV-AYLSRGSSWKMLYVWTSIPSIVCCIIIYPFISESPRWLFIHGHEAEA  274 (521)
Q Consensus       196 ~i~~~~~~~~rg~~~~~~~~~~~~G~~i~~~i-~~~~~~~~wr~~f~~~~~~~~~~~~~~~~~~~esp~~~~~~~~~~~~  274 (521)
                      .+..+|+ |+|+.+.|+...+.++|.++-|.+ .++++..|||+.+++.+.+.+-..+.....-|.+++..   .+.++.
T Consensus       159 iv~~YF~-kkR~lA~Gia~~GsG~G~~~~~~l~~~l~~~~G~r~~~l~~~~~~l~~~~~~~~~rp~~~~~~---~~~~~~  234 (509)
T KOG2504|consen  159 ILGTYFE-KKRALATGIAVSGTGVGTVVFPPLLKYLLSKYGWRGALLIFGGISLNVLVAGALLRPLSPPKK---PNEEKD  234 (509)
T ss_pred             hhhhHhH-HHHHHHHhhhhccCCcceeeHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHcCCCCcCCC---chhhhh
Confidence            9998886 899999999999999998887666 88999999999999999888777744444444333210   000000


Q ss_pred             HHHHHHHhhh-------cCCCCCCCccccccCCCC-CccccCCCc--ccccccH---HHHhccHHHHHHHHHHHHHHHHH
Q 039541          275 MAVLKRLASR-------SNYQSDYGLESCCLSNMP-PKAKNVIPK--LDLYSSL---KDLFNRKWALRRLLTIMALAFGI  341 (521)
Q Consensus       275 ~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~-~~~~~~~~~--~~~~~~~---~~l~~~~~~~~~~~~~~~~~~~~  341 (521)
                      .+........       ....++............ .++.++...  ..+....   +++++++.++...+...+..++.
T Consensus       235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ll~~~~fl~~~~~~~~~~~g~  314 (509)
T KOG2504|consen  235 LRNSAASVESTPKPVELRISERDSGLKKLSLSNLATLKRGPDKWRNSPLQAFLSMLDLSLLKDPKFLLLALSNLFAYLGF  314 (509)
T ss_pred             hccccccccccccccccccccCCCCCCcccccchhhhhhCCccccccchhhhhhhhhHHHHcCchHHHHHHHHHHHHHHH
Confidence            0000000000       000000000000000000 000000000  1111122   57899988777777777777777


Q ss_pred             HHHHHhHHhhccCCCccH---HHHHHHHHHHhHhHHHHHHHHHhhcC--CchHHHHHHHHHHHHHHHHHhcCCchHHHHH
Q 039541          342 GVVYFGLLLGVGNLSFNI---YLSLAFNGLLDIPAYLLTFILIERWS--RKSSILTFCILSGTCSAICVAIGDEQEVLQI  416 (521)
Q Consensus       342 ~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~g~l~dr~g--~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~  416 (521)
                      ...++.++.+..+.+.+.   .....+.++..++++++.|++.|+..  ++.+..++.++.+++.+.+.+....  +.++
T Consensus       315 ~~p~~~l~~~~~~~g~~~~~aa~l~Siigi~~i~gRi~~G~laD~~~~~~~~~~~~~ll~~gl~~~~~p~~~~~--~~l~  392 (509)
T KOG2504|consen  315 NVPFVYLPSYAKSLGLSSNDAAFLLSIIGVSDIIGRIILGLLADKPGIRALVLFLLTLLIAGLARLFLPFATTY--VGLI  392 (509)
T ss_pred             HHHHHHHHHHHhhcCCChhhhHHHHHHHHHhhhhhhhhhhhhcCccccchHHHHHHHHHHHHHHHHHHHHhccH--HHHH
Confidence            777777777777777653   44556677888999999999999987  4445556666666666555554444  6778


Q ss_pred             HHHHHHHHHHHHHHHHHHHhhccccCchhhhhhhHHHHHhhhhhhhHHHHHHHhh---ccchhHHHHHHHHHHHHHhHhh
Q 039541          417 GLELASFFSACVAFNVLLVFGTELFTTCVRNSTTSLVRQAVNLGAAFSPVLISAG---RQNEFLSFGVFGLVVFCFGFFV  493 (521)
Q Consensus       417 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~p~~~~~~---~~~~~~~~~~~~~~~~~~~~~~  493 (521)
                      ...+++|+..+.........+.|..+.+.-..+.|+...+..++..++|.+.|+.   ..++...|...+++.+++.+.+
T Consensus       393 ~~~~~fG~~~g~~~~l~~~i~~~~~g~~~l~~a~Gl~l~~~gi~~l~gpPiag~~~d~tg~Y~~~f~~~g~~~~~s~~~~  472 (509)
T KOG2504|consen  393 VFSILFGFCVGSFSSLTPVILVDLVGLEKLSNAYGLLLLFQGIGALVGPPIAGLLYDITGNYDHAFYFCGLCFLLSAVLL  472 (509)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHcChhhcchHHHHHHHHhHHHHHcCcccceeeeeccCCeeeehhhcChHHHHHHHHH
Confidence            8888899998888888888999999999999999999999999999999999862   3457788888888888888777


Q ss_pred             hccc
Q 039541          494 VFLP  497 (521)
Q Consensus       494 ~~~~  497 (521)
                      +..+
T Consensus       473 ~~~~  476 (509)
T KOG2504|consen  473 LILR  476 (509)
T ss_pred             HHhH
Confidence            6665

>PRK15011 sugar efflux transporter B; Provisional

Probab=99.95  E-value=1.2e-25  Score=220.59  Aligned_cols=342  Identities=15%  Similarity=0.150  Sum_probs=222.0

Q ss_pred             cceeeecceeeCCccccchhhHHHHHH-HHHHhhhhhhhccccCCCCchHHH-HHHHHHHHHHHHHHhccccHHHHHHHH
Q 039541          102 TTIISDWSLECAGSSILSGLPSSCFFI-GCLLGGLALSTLGDSSSLGRKKLL-FLSCFAMSITALATIFANNIWIYSTIR  179 (521)
Q Consensus       102 ~~i~~~~~~~~~~~~~~~~~~~s~~~l-g~~i~~~~~g~l~dr~~~Grr~~l-~~~~~~~~~~~~~~~~~~~~~~l~~~r  179 (521)
                      +.+.+++|++.++.    |++.+...+ +..++.++.|+ +||  +||||.+ ..+.++.+++.++.+++++++.+++.+
T Consensus        40 ~~l~~~~~~s~~~~----g~~~~~~~~~~~~~~~~~~~~-~dr--~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~  112 (393)
T PRK15011         40 IFLTDEVHARPAMV----GFFFTGSAVIGILVSQFLAGR-SDK--RGDRKSLIVFCCLLGVLACTLFAWNRNYFVLLFVG  112 (393)
T ss_pred             HHHHhhcCCCHHHH----HHHHHHHHHHHHHHHHHHHHH-Hhc--ccchhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence            34678999999666    999776555 66666666666 999  9999875 456666678888888999999887665


Q ss_pred             HHhhccchhhHhhhhhheeeeecCcch--hHHHHHHHHHHHHHHHHHHHH-HHhhcCCchhHHHHHHHHHHHHHHhhhce
Q 039541          180 FVAGFFRAPIMTSVIVLLSEMVSKRWR--GQVVIIGFTFFSFGLVSLPAV-AYLSRGSSWKMLYVWTSIPSIVCCIIIYP  256 (521)
Q Consensus       180 ~l~G~~~g~~~~~~~~~i~~~~~~~~r--g~~~~~~~~~~~~G~~i~~~i-~~~~~~~~wr~~f~~~~~~~~~~~~~~~~  256 (521)
                      .+.|...+...+...+++.|+.++++|  +...++.+.+.++|.+++|++ +.+.++.|||..|++.++..++..++.++
T Consensus       113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~g~~i~~~l~~~~gw~~~f~~~~~~~~~~~~~~~~  192 (393)
T PRK15011        113 VFLSSFGSTANPQMFALAREHADKTGREAVMFSSFLRAQVSLAWVIGPPLAYALAMGFSFTVMYLSAAVAFIVCGVMVWL  192 (393)
T ss_pred             HHHHHHHHhhHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHhhHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHh
Confidence            554444456788888888888776655  345678889999999999999 56667789999999998888777756667


Q ss_pred             eeecchhHHHhcCCHHHHHHHHHHHhhhcCCCCCCCccccccCCCCCccccCCCcccccccHHHHhccHHHHHHHHHHHH
Q 039541          257 FISESPRWLFIHGHEAEAMAVLKRLASRSNYQSDYGLESCCLSNMPPKAKNVIPKLDLYSSLKDLFNRKWALRRLLTIMA  336 (521)
Q Consensus       257 ~~~esp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~  336 (521)
                      ++||+++.   +++  +         + .                  +. +         ..++  +.+..+........
T Consensus       193 ~~~~~~~~---~~~--~---------~-~------------------~~-~---------~~~~--~~~~~~~~~~~~~~  227 (393)
T PRK15011        193 FLPSMRKE---LPL--A---------T-G------------------TL-E---------APRR--NRRDTLLLFVICTL  227 (393)
T ss_pred             hcCccCCC---Ccc--c---------c-c------------------cc-c---------cccc--ccccHHHHHHHHHH
Confidence            77876421   000  0         0 0                  00 0         0000  00111122222222


Q ss_pred             HHHHHHHHHHhHHhhc-cCCCccHHHHH---HHHHHHhHhHHHHHHHHHhhcCCchHHHHHHHHHHHHHHHHHhcCCchH
Q 039541          337 LAFGIGVVYFGLLLGV-GNLSFNIYLSL---AFNGLLDIPAYLLTFILIERWSRKSSILTFCILSGTCSAICVAIGDEQE  412 (521)
Q Consensus       337 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~---~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~i~~~~~~~~~~~~~  412 (521)
                      .+..........|.+. +..+.+.....   ....+..+++.++.|+++||++||+.+..+.....+....+.... . .
T Consensus       228 ~~~~~~~~~~~~p~~l~~~~~~~~~~~g~~~~~~~~~~i~~~~~~G~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~-~-~  305 (393)
T PRK15011        228 MWGTNSLYIINMPLFIINELHLPEKLAGVMMGTAAGLEIPTMLIAGYFAKRLGKRFLMRVAAVAGVCFYAGMLMAH-S-P  305 (393)
T ss_pred             HHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHh-h-H
Confidence            2222222223344444 34555543332   233455667889999999999999987776655554443333222 1 2


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhccccCchhhhhhhHHHHHhhhhhhhHHHHHHHhh--ccchhHHHHHHHHHHHHHh
Q 039541          413 VLQIGLELASFFSACVAFNVLLVFGTELFTTCVRNSTTSLVRQAVNLGAAFSPVLISAG--RQNEFLSFGVFGLVVFCFG  490 (521)
Q Consensus       413 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~p~~~~~~--~~~~~~~~~~~~~~~~~~~  490 (521)
                      +...+..++.+++.+...+....+..|.+|++ |+++.++.+...++|..++|.+.|..  ..++...+.+.+++.+++.
T Consensus       306 ~~~l~~~~l~~~~~g~~~~~~~~~~~~~~p~~-~g~~~~~~~~~~~lg~~~g~~l~G~i~~~~g~~~~~~~~~~~~~~~~  384 (393)
T PRK15011        306 AILLGLQLLNAIYIGILGGIGMLYFQDLMPGQ-AGSATTLYTNTSRVGWIIAGSLAGIVAEIWNYHAVFWFALVMIIATL  384 (393)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCC-cchHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH
Confidence            33444445555555665666677788888865 89999999988999999999999863  2356666666666666666


Q ss_pred             Hhhhcccc
Q 039541          491 FFVVFLPE  498 (521)
Q Consensus       491 ~~~~~~~~  498 (521)
                      +.++.+||
T Consensus       385 ~~~~~~~~  392 (393)
T PRK15011        385 FCLLRIKD  392 (393)
T ss_pred             HHHHhhcC
Confidence            66666554

>TIGR00896 CynX cyanate transporter

Probab=99.95  E-value=3e-26  Score=222.14  Aligned_cols=317  Identities=14%  Similarity=0.049  Sum_probs=230.3

Q ss_pred             CCCcceeeecceeeCCccccchhhHHHHHHHHHHhhhhhhhccccCCCCchHHHHHHHHHHHHHHHHHhccccHHHHHHH
Q 039541           99 PSDTTIISDWSLECAGSSILSGLPSSCFFIGCLLGGLALSTLGDSSSLGRKKLLFLSCFAMSITALATIFANNIWIYSTI  178 (521)
Q Consensus        99 ~~~~~i~~~~~~~~~~~~~~~~~~~s~~~lg~~i~~~~~g~l~dr~~~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~  178 (521)
                      |.+|.+.+++|++.++.    |++.+.+.++..+++++.|+++||  +|||+++.++.++..++.+.+ .+++++.+++.
T Consensus        21 ~~lp~l~~~~~~s~~~~----g~~~s~~~~~~~~~~~~~g~l~dr--~g~r~~~~~~~~~~~~~~~~~-~~~~~~~l~~~   93 (355)
T TIGR00896        21 PLLPQIRSALGMSFSVA----GLLTALPVLCFAVLAPLAPWLARR--FGEERSVAAGLLLIAAGILIR-SAPGTALLFAG   93 (355)
T ss_pred             ccHHHHHHHhCCCHHHH----HHHHHHHHHHHHHHHHhHHHHHHH--hCchHHHHHHHHHHHHHHHHH-HhccHHHHHHH
Confidence            44899999999999776    999999999999999999999999  999999999999988888887 78899999999


Q ss_pred             HHHhhccchhhHhhhhhheeeeecCcchhHHHHHHHHHHHHHHHHHHHH-HHhhcCC--chhHHHHHHHHHHHHHHhhhc
Q 039541          179 RFVAGFFRAPIMTSVIVLLSEMVSKRWRGQVVIIGFTFFSFGLVSLPAV-AYLSRGS--SWKMLYVWTSIPSIVCCIIIY  255 (521)
Q Consensus       179 r~l~G~~~g~~~~~~~~~i~~~~~~~~rg~~~~~~~~~~~~G~~i~~~i-~~~~~~~--~wr~~f~~~~~~~~~~~~~~~  255 (521)
                      |++.|++.+...+....++.|++| ++|++++++.+.+..+|..+++.+ +.+.+..  +||+.|.+.++..++.. .  
T Consensus        94 ~~~~g~g~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~i~~~~~~~l~~~~~~~w~~~f~~~~~~~~~~~-~--  169 (355)
T TIGR00896        94 TALIGVGIAIINVLLPSLIKRDFP-QRVGLMTGLYSMALMGGAALAAAATVPLAQHSGGHWQQALAWWALPALLAL-L--  169 (355)
T ss_pred             HHHHHHHHHHHhccchHHHHHhCc-chhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHH-H--
Confidence            999999999888888888889886 689999999999999999999888 4554443  49999887766544433 2  


Q ss_pred             eeeecchhHHHhcCCHHHHHHHHHHHhhhcCCCCCCCccccccCCCCCccccCCCcccccccHHHHhccHHHHHHHHHHH
Q 039541          256 PFISESPRWLFIHGHEAEAMAVLKRLASRSNYQSDYGLESCCLSNMPPKAKNVIPKLDLYSSLKDLFNRKWALRRLLTIM  335 (521)
Q Consensus       256 ~~~~esp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~  335 (521)
                      .++|+.++      +.           + .+.                   + ..    ....++++|+|.++...+...
T Consensus       170 ~~~~~~~~------~~-----------~-~~~-------------------~-~~----~~~~~~~~~~~~~~~~~~~~~  207 (355)
T TIGR00896       170 AWIPQVRR------RV-----------A-ANQ-------------------T-TT----RLTPVRIWRSPLAWQVTVFFG  207 (355)
T ss_pred             HHhhhhcc------cc-----------C-CCC-------------------C-CC----CCCCchhhcCHhHHHHHHHHH
Confidence            22343221      00           0 000                   0 00    013345677877655444433


Q ss_pred             HHHHHHHHHHHhHHhhccCCCccHHH---HHHHHHHHhHhHHHHHHHHHhhc-CCchHHHHHHHHHHHHHHHHHhcCCch
Q 039541          336 ALAFGIGVVYFGLLLGVGNLSFNIYL---SLAFNGLLDIPAYLLTFILIERW-SRKSSILTFCILSGTCSAICVAIGDEQ  411 (521)
Q Consensus       336 ~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~g~l~dr~-g~~~~~~~~~~~~~i~~~~~~~~~~~~  411 (521)
                      +............|.++++.+.+...   ......++.++++++.|++.||+ +||+.+.++..+.+++.+.+.+.....
T Consensus       208 ~~~~~~~~~~~~lp~~~~~~g~~~~~~g~~~~~~~~~~i~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  287 (355)
T TIGR00896       208 LQSGLYYSLIGWLPAILISHGASAATAGSLLALMQLAQAASALLIPALARRVKDQRGIVAVLAVLQLVGLCGLLFAPMHG  287 (355)
T ss_pred             HHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHhhhccchHHHHHHHHHHHHHHHHHHHhhhhH
Confidence            33333333334456666666665433   33455678889999999999999 566666677777777666565544332


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhcccc-CchhhhhhhHHHHHhhhhhhhHHHHHHHhh
Q 039541          412 EVLQIGLELASFFSACVAFNVLLVFGTELF-TTCVRNSTTSLVRQAVNLGAAFSPVLISAG  471 (521)
Q Consensus       412 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~r~~~~~~~~~~~~~g~~~~p~~~~~~  471 (521)
                        .. ...++.+++.+..++.......+.. +++.++...++.+....++.+++|.+.|+.
T Consensus       288 --~~-~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~gp~~~G~l  345 (355)
T TIGR00896       288 --LW-AWALVLGLGQGGAFPLALTLIGLRSRQAAQAAALSAMAQSIGYLLAALGPLFVGVL  345 (355)
T ss_pred             --HH-HHHHHHHHhhhhHhHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence              11 2456678888888887766665544 456778999999988999999999999863

This family of proteins is involved in active transport of cyanate. The cyanate transporter in E.Coli is used to transport cyanate into the cell so it can be metabolized into ammonia and bicarbonate. This process is used to overcome the toxicity of environmental cyanate.

>TIGR00889 2A0110 nucleoside transporter

Probab=99.95  E-value=5.4e-26  Score=223.86  Aligned_cols=349  Identities=12%  Similarity=0.002  Sum_probs=236.9

Q ss_pred             CcceeeecceeeCCccccchhhHHHHHHHHHHhhhhhhhccccCCCCc-hHHHHHHHHHHHHHHHHHhccccHHHHHHHH
Q 039541          101 DTTIISDWSLECAGSSILSGLPSSCFFIGCLLGGLALSTLGDSSSLGR-KKLLFLSCFAMSITALATIFANNIWIYSTIR  179 (521)
Q Consensus       101 ~~~i~~~~~~~~~~~~~~~~~~~s~~~lg~~i~~~~~g~l~dr~~~Gr-r~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r  179 (521)
                      .+.+.+++|++.++.    |++.+++.++..++++++|.++||  +|| |+++.++.++..++..+..+.++++.+++.|
T Consensus        26 ~~~l~~~~g~s~~~i----Gl~~a~~~~~~~i~~~~~g~l~dr--~g~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   99 (418)
T TIGR00889        26 GSYMSKTLHFSGAEI----GWVYSSTGIAAILMPILVGIIADK--WLSAQKVYAVCHFAGALLLFFAAQVTTPAGMFPVL   99 (418)
T ss_pred             HHHHHHhcCCCHHHH----HHHHHHHHHHHHHHHHHHHHHHHH--hcccHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHH
Confidence            567778899999666    999999999999999999999999  965 7788888888889998999999999999999


Q ss_pred             HHhhccchhhHhhhhhhe----e----eeecCcchhHHHHHHHHHHHHHHHHHHHHHHhhc-CCchhHHHHHHHHHHHHH
Q 039541          180 FVAGFFRAPIMTSVIVLL----S----EMVSKRWRGQVVIIGFTFFSFGLVSLPAVAYLSR-GSSWKMLYVWTSIPSIVC  250 (521)
Q Consensus       180 ~l~G~~~g~~~~~~~~~i----~----~~~~~~~rg~~~~~~~~~~~~G~~i~~~i~~~~~-~~~wr~~f~~~~~~~~~~  250 (521)
                      ++.|++.+...+...++.    .    |......|.+..|      .+|.+++|.++.... ...|+ +|++.++..++.
T Consensus       100 ~l~~~~~~~~~~~~~~l~~~~~~~~g~~~~~~~~~~r~~G------~lG~~ig~~l~g~l~~~~~~~-~f~~~~~~~~~~  172 (418)
T TIGR00889       100 LANSLAYMPTIALTNSISYANLPQAGLDVVTDFPPIRVMG------TIGFIAAMWAVSLLDIELSNI-QLYITAGSSALL  172 (418)
T ss_pred             HHHHHHHccHHHHHHHHHHHHHhhcCCCchhcCCCeeeeh------hHHHHHHHHHHHHhcccchhH-HHHHHHHHHHHH
Confidence            999998776666555442    2    3333334555555      367777777743333 22354 455666666665


Q ss_pred             HhhhceeeecchhHHHhcCCHHHHHHHHHHHhhhcCCCCCCCccccccCCCCCccccCCCcccccccHHHHhccHHHHHH
Q 039541          251 CIIIYPFISESPRWLFIHGHEAEAMAVLKRLASRSNYQSDYGLESCCLSNMPPKAKNVIPKLDLYSSLKDLFNRKWALRR  330 (521)
Q Consensus       251 ~~~~~~~~~esp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~  330 (521)
                      . +..+++||+|+.   +++.++.   .++                                ....+.++++|+|.++..
T Consensus       173 ~-~~~~~~~e~~~~---~~~~~~~---~~~--------------------------------~~~~~~~~~~k~~~~~~~  213 (418)
T TIGR00889       173 G-VFALTLPDIPVA---KSTAKMS---IKV--------------------------------MLGLDAFILFKNKRMAIF  213 (418)
T ss_pred             H-HHHhcCCCCCCC---ccccccC---HHH--------------------------------HhhhhHHHHhcCCCeeeH
Confidence            5 445677887521   0000000   000                                000134567788876655


Q ss_pred             HHHHHHHHHHHHHHHHhHHhhccCCCcc-----------HHHHHHHHHHHhHhHHHHHHHHHhhcCCchHHHHHHHHHHH
Q 039541          331 LLTIMALAFGIGVVYFGLLLGVGNLSFN-----------IYLSLAFNGLLDIPAYLLTFILIERWSRKSSILTFCILSGT  399 (521)
Q Consensus       331 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~i  399 (521)
                      ++..++........+...+.+.++.+.+           ......+..+..+++.++.+++.||+|+|+++..+.++.++
T Consensus       214 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~g~~~~~~~i~~i~~~~~~g~l~dr~g~r~~l~~~~~~~~v  293 (418)
T TIGR00889       214 FFFSMLLGAPLQITNIFGNGFLHEFGRNPEFADSFVVKNASIWMSLSQFSEIFFILTIPFFLKRFGIKKVMLLSLVAWAL  293 (418)
T ss_pred             HHHHHHHHhHHHHHHHhHHHHHHHhcccccccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHH
Confidence            5555554443333333334444443322           13334455567778889999999999999999999998888


Q ss_pred             HHHHHHhcCCch--HHHHHHHHHHHHHHHHHHHHHHHHhhccccCchhhhhhhHHHH-HhhhhhhhHHHHHHHhhc----
Q 039541          400 CSAICVAIGDEQ--EVLQIGLELASFFSACVAFNVLLVFGTELFTTCVRNSTTSLVR-QAVNLGAAFSPVLISAGR----  472 (521)
Q Consensus       400 ~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~-~~~~~g~~~~p~~~~~~~----  472 (521)
                      ...++.......  .+..++..++.+++.+...+....++.|.+|++.|+++.|+.+ ....+|.+++|.+.|...    
T Consensus       294 ~~~l~~~~~~~~~~~~~l~l~~~l~g~~~~~~~~~~~~~i~~~~p~~~~g~~~g~~~~~~~~lg~~iGp~l~G~l~~~~g  373 (418)
T TIGR00889       294 RFGFFAYGDPEYFGYALLFLSMIVYGCAFDFFNISGSVFVEKEVPVHIRASAQGLFTLMCNGFGSLLGYILSGVMVEKMF  373 (418)
T ss_pred             HHHHHHHcCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhc
Confidence            766665532221  1334556677777777777888899999999999999999997 567899999999998621    


Q ss_pred             ----cchhHHHHHHHHHHHHHhHh-hhccccCCC
Q 039541          473 ----QNEFLSFGVFGLVVFCFGFF-VVFLPETIG  501 (521)
Q Consensus       473 ----~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~  501 (521)
                          .++...|.+.+++.+++.++ .++++|+++
T Consensus       374 ~~~~~~~~~~f~~~~~~~~i~~~l~~~~~~~~~~  407 (418)
T TIGR00889       374 AYGTFDWQTMWLFFAGYIAILAVLFMIFFKYSHN  407 (418)
T ss_pred             cccCCchHHHHHHHHHHHHHHHHHHHHHhCCccc
Confidence                23566777777776666554 455565543

This family of proteins transports nucleosides at a high affinity. The transport mechanism is driven by proton motive force. This family includes nucleoside permease NupG and xanthosine permease from E.Coli.

>TIGR00792 gph sugar (Glycoside-Pentoside-Hexuronide) transporter

Probab=99.95  E-value=1.9e-25  Score=223.04  Aligned_cols=326  Identities=14%  Similarity=0.065  Sum_probs=236.3

Q ss_pred             CcceeeecceeeCCccccchhhHHHHHHHHHHhhhhhhhccccC--CCCch-HHHHHHHHHHHHHHHHHhcccc------
Q 039541          101 DTTIISDWSLECAGSSILSGLPSSCFFIGCLLGGLALSTLGDSS--SLGRK-KLLFLSCFAMSITALATIFANN------  171 (521)
Q Consensus       101 ~~~i~~~~~~~~~~~~~~~~~~~s~~~lg~~i~~~~~g~l~dr~--~~Grr-~~l~~~~~~~~~~~~~~~~~~~------  171 (521)
                      .+.+.+++|++..+.    |++.++..+..++..|+.|+++||+  |+||| +.++.+....+++.+++.+.++      
T Consensus        23 ~~~~~~~~g~s~~~~----g~i~~~~~i~~~i~~p~~G~lsDr~~~r~Grrr~~i~~~~~~~~i~~~~~~~~~~~~~~~~   98 (437)
T TIGR00792        23 LFFYTDVLGLSAAFV----GTLFLVARILDAITDPIMGNIVDRTRTRWGKFRPWLLIGAIPFSIVLVLLFTTPDFSATGK   98 (437)
T ss_pred             HHHHHHccCCCHHHH----HHHHHHHHHHHHhccchheEeeecCCCCCCCcchhHHHhHHHHHHHHHHHHhCCCCCcchH
Confidence            566778899999666    9999999999999999999999985  57884 4677788888888888877654      


Q ss_pred             HHHHHHHHHHhhccchhhHhhhhhheeeee-cCcchhHHHHHHHHHHHHHHHHHHHH-HHhh-------cCCchhHHHHH
Q 039541          172 IWIYSTIRFVAGFFRAPIMTSVIVLLSEMV-SKRWRGQVVIIGFTFFSFGLVSLPAV-AYLS-------RGSSWKMLYVW  242 (521)
Q Consensus       172 ~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~-~~~~rg~~~~~~~~~~~~G~~i~~~i-~~~~-------~~~~wr~~f~~  242 (521)
                      ...+++.+++.+++.+...+...++..|.. ++++|++..++.+.+..+|.++++.+ +.+.       +..+||+.+++
T Consensus        99 ~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~R~~~~~~~~~~~~~g~~l~~~~~~~l~~~~~~~~~~~g~~~~~~i  178 (437)
T TIGR00792        99 LVYAYITYILLGLFYSFVNIPYWSLVPAITLDPRERESLSTFRRFGATLGGLLVAVIVLPLVSYFGGGDDKFGWFMFALV  178 (437)
T ss_pred             HHHHHHHHHHHHHHHHhhcccHhhCcccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccccHHHHHHH
Confidence            456677888889888887777788889987 56899999999988888887766544 3222       24689999999


Q ss_pred             HHHHHHHHHhhhceeeecchhHHHhcCCHHHHHHHHHHHhhhcCCCCCCCccccccCCCCCccccCCCcccccccHHHHh
Q 039541          243 TSIPSIVCCIIIYPFISESPRWLFIHGHEAEAMAVLKRLASRSNYQSDYGLESCCLSNMPPKAKNVIPKLDLYSSLKDLF  322 (521)
Q Consensus       243 ~~~~~~~~~~~~~~~~~esp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  322 (521)
                      .+++.++..++.++..||+++.     +.++                                  ++++.+..+.++.++
T Consensus       179 ~~~l~~~~~~~~~~~~~e~~~~-----~~~~----------------------------------~~~~~~~~~~~~~l~  219 (437)
T TIGR00792       179 LALIGVVSLIICFFGTKERYSE-----IPKN----------------------------------IEKKLSLKQIFKALF  219 (437)
T ss_pred             HHHHHHHHHHHHHcCCEecCCC-----CCcc----------------------------------cccCCCHHHHHHHHh
Confidence            9988888775666777775410     0000                                  000001123567888


Q ss_pred             ccHHHHHHHHHHHHHHHHHHHHHHhHHhhccCC-Ccc--HHHHHHHHHHHhHhHHHHHHHHHhhcCCchHHHHHHHHHHH
Q 039541          323 NRKWALRRLLTIMALAFGIGVVYFGLLLGVGNL-SFN--IYLSLAFNGLLDIPAYLLTFILIERWSRKSSILTFCILSGT  399 (521)
Q Consensus       323 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~--~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~i  399 (521)
                      ++|.++...+..++.+..........+++.+.. +..  ......+..++.+++.++.+++.||+|+|+.+..+..+.++
T Consensus       220 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ii~~~~~~~l~~r~g~~~~~~~~~~~~~~  299 (437)
T TIGR00792       220 KNDQLLILCLAYLFYNLAFNIKNGVQVYYFTYVLGDPELFSYMGSIAIVAGLIGVLLFPRLVKKFGRKILFAGGILLMVL  299 (437)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHcchhheeEeeecCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHH
Confidence            999877665555555554443333334444322 211  12233445677888999999999999999999998888887


Q ss_pred             HHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHhhccccC-------chhhhhhhHHHHHhhhhhhhHHHHHHHh
Q 039541          400 CSAICVAIGDEQEVLQIGLELASFFSACVAFNVLLVFGTELFT-------TCVRNSTTSLVRQAVNLGAAFSPVLISA  470 (521)
Q Consensus       400 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~r~~~~~~~~~~~~~g~~~~p~~~~~  470 (521)
                      +.+.+.+... +.+...+..++.+++.+...+..+++.+|..+       ++.+|.+.|+.+....+|..+++.+.+.
T Consensus       300 ~~~~~~~~~~-~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~g~~lg~~i~g~  376 (437)
T TIGR00792       300 GYLIFFFAGS-NLPLILVLIILAGFGQNFVTGLVWALVADTVDYGEWKTGVRAEGLVYSVRTFVRKLGQALAGFLVGL  376 (437)
T ss_pred             HHHHHHHcch-hHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhcCccchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            7766655432 22445566677788888888888999888865       4567999999999999999999988874

GPH:cation symporters catalyze uptake of sugars in symport with a monovalent cation (H+ or Na+). Members of this family includes transporters for melibiose, lactose, raffinose, glucuronides, pentosides and isoprimeverose. Mutants of two groups of these symporters (the melibiose permeases of enteric bacteria, and the lactose permease of Streptococcus thermophilus) have been isolated in which altered cation specificity is observed or in which sugar transport is uncoupled from cation symport (i.e., uniport is catalyzed). The various members of the family can use Na+, H+ or Li, Na+ or Li+, H+ or Li+, or only H+ as the symported cation. All of these proteins possess twelve putative transmembrane a-helical spanners.

>PRK11902 ampG muropeptide transporter; Reviewed

Probab=99.95  E-value=4e-25  Score=217.67  Aligned_cols=346  Identities=13%  Similarity=0.102  Sum_probs=234.9

Q ss_pred             CcceeeecceeeCCccccchhhHHHHHHHHHHhhhhhhhccccCCC-----CchH-HHHHHHHHHHHHHHHHhcc---cc
Q 039541          101 DTTIISDWSLECAGSSILSGLPSSCFFIGCLLGGLALSTLGDSSSL-----GRKK-LLFLSCFAMSITALATIFA---NN  171 (521)
Q Consensus       101 ~~~i~~~~~~~~~~~~~~~~~~~s~~~lg~~i~~~~~g~l~dr~~~-----Grr~-~l~~~~~~~~~~~~~~~~~---~~  171 (521)
                      +|.+-++.|++.++.    |++..+...  .+..+++|+++||  +     |||| .++++.++.+++..+.++.   ++
T Consensus        22 ~~~~l~~~g~~~~~i----g~~~~~~~~--~~~~~l~g~~~Dr--~~~~~~g~rr~~l~~~~~~~~l~~~~l~~~~~~~~   93 (402)
T PRK11902         22 LQAWMTVEGLDIQTI----GFFSLVGQA--YIFKFLWAPLMDR--YTPPLLGRRRGWLLLTQVGLAASIAAMAFCPPHAA   93 (402)
T ss_pred             HHHHHHHcCCCHHHH----HHHHHHHHH--HHHHHHHHHHHHc--ccccCCCcchhHHHHHHHHHHHHHHHHHhcCccch
Confidence            788888899999777    998777665  5899999999999  9     8875 7888888888888887776   45


Q ss_pred             HHHHHHHHHHhhccchhhHhhhhhheeeeecCcchhHHHHHHHHHHHHHHHHHHHH-HHhhcC-CchhHHHHHHHHHHHH
Q 039541          172 IWIYSTIRFVAGFFRAPIMTSVIVLLSEMVSKRWRGQVVIIGFTFFSFGLVSLPAV-AYLSRG-SSWKMLYVWTSIPSIV  249 (521)
Q Consensus       172 ~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~rg~~~~~~~~~~~~G~~i~~~i-~~~~~~-~~wr~~f~~~~~~~~~  249 (521)
                      ++.+++..++.++..+...+...+++.|++|+++|+++.++...+..+|.++++.+ +.+.+. .|||..|++.++..++
T Consensus        94 ~~~l~~~~~~~~~~~~~~~~~~~al~~~~~~~~~r~~~~~~~~~g~~~g~i~g~~l~~~l~~~~~gw~~~f~i~a~~~l~  173 (402)
T PRK11902         94 LWPLAGLAVLVAFLSASQDIVFDAYSTDVLHPEERGAGAAVKVLGYRLAMLVSGGLALWLADRVLGWGNTYLLMAGLMLA  173 (402)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhhhhHHHHHHHHHHHHHHHHHhHHHHHHHhcccCHHHHHHHHHHHHHH
Confidence            78888888888998898999999999999999999999999999999999998887 555554 5999999998887776


Q ss_pred             HHhhhceeeecchhHHHhcCCHHHHHHHHHHHhhhcCCCCCCCccccccCCCCCccccCCCcccccccHHHHhccHHHHH
Q 039541          250 CCIIIYPFISESPRWLFIHGHEAEAMAVLKRLASRSNYQSDYGLESCCLSNMPPKAKNVIPKLDLYSSLKDLFNRKWALR  329 (521)
Q Consensus       250 ~~~~~~~~~~esp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~  329 (521)
                      .. +..+++||+++.   +++.++.++   +                                 ...++++++++|.++.
T Consensus       174 ~~-l~~~~~~e~~~~---~~~~~~~~~---~---------------------------------~~~~~~~l~~~~~~~~  213 (402)
T PRK11902        174 GA-LTTLWAPEPEVP---ARPPRSLGE---A---------------------------------VVGPLRDFFSRRGAWA  213 (402)
T ss_pred             HH-HHHHhcCCCccc---ccccchhHH---H---------------------------------HHHHHHHHHhCcCHHH
Confidence            65 444566775431   000000000   0                                 0125677889988766


Q ss_pred             HHHHHHHHHHHHHHH-HHhHHhhccCCCccHHHHHHHH---H-HHhHhHHHHHHHHHhhcCCchHHHHHHHHHHHHHHHH
Q 039541          330 RLLTIMALAFGIGVV-YFGLLLGVGNLSFNIYLSLAFN---G-LLDIPAYLLTFILIERWSRKSSILTFCILSGTCSAIC  404 (521)
Q Consensus       330 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~---~-~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~i~~~~~  404 (521)
                      .++...+........ .+..+++.++.+.+........   + ++.+++.++++++.||+++|+.+..+..+..+..+.+
T Consensus       214 ~l~~~~l~~~~~~~~~~~~~~~l~~~~G~~~~~~g~~~~~~~~~~~i~g~~~~g~l~~r~g~~~~l~~~~~~~~l~~l~~  293 (402)
T PRK11902        214 LLLLIVLYKLGDAFAGSLSTTFLIRGAGFSAGEVGIVNKTLGLAATIVGALAGGTLMVRLGLYRSLMLFGVLQAVSNLGY  293 (402)
T ss_pred             HHHHHHHHHhHHHHHHHHHHHHHHHhcCCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence            555544444433222 2333445555666655444332   2 3467889999999999999988777666655554333


Q ss_pred             H---hcCCchHHHHHHHH----HHHHHHHHHHHHHHHHhhccccCchhhhhhhHHHHHhhhhhhhHHHHHHHh--hccch
Q 039541          405 V---AIGDEQEVLQIGLE----LASFFSACVAFNVLLVFGTELFTTCVRNSTTSLVRQAVNLGAAFSPVLISA--GRQNE  475 (521)
Q Consensus       405 ~---~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~p~~~~~--~~~~~  475 (521)
                      .   ...+. .+......    +..++..+...+....++.+.+|.+.++    +......++..+++.+.|.  ...++
T Consensus       294 ~~~~~~~~~-~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~l~~~~~~~~~G~l~~~~G~  368 (402)
T PRK11902        294 WVLAVTPKH-LWTMALAIGIENLCGGMGTAAFVALLMALCNRSFSATQYA----LLSALASVGRVYVGPTSGYLVEAYGW  368 (402)
T ss_pred             HHHHhcCCc-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcHHHHH----HHHHHHHHHHHHHHHHHHHHHHHhCh
Confidence            2   22222 13333333    3445556666777888888888866654    3444445555544445554  33456


Q ss_pred             hHHHHHHHHHHHHHhHhhhccccC
Q 039541          476 FLSFGVFGLVVFCFGFFVVFLPET  499 (521)
Q Consensus       476 ~~~~~~~~~~~~~~~~~~~~~~~~  499 (521)
                      ...|.+.+++++++.++....+.+
T Consensus       369 ~~~f~~~~~~~~~~~~~~~~~~~~  392 (402)
T PRK11902        369 PGFYLMTVVIALPGLALLWLMRGT  392 (402)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhhh
Confidence            777777777777766655544433

>PRK11128 putative 3-phenylpropionic acid transporter; Provisional

Probab=99.95  E-value=3.7e-25  Score=216.38  Aligned_cols=337  Identities=13%  Similarity=0.026  Sum_probs=233.7

Q ss_pred             CcceeeecceeeCCccccchhhHHHHHHHHHHhhhhhhhccccCCCCch----HHHHHHHHHHHHHHHHHhccccHHHHH
Q 039541          101 DTTIISDWSLECAGSSILSGLPSSCFFIGCLLGGLALSTLGDSSSLGRK----KLLFLSCFAMSITALATIFANNIWIYS  176 (521)
Q Consensus       101 ~~~i~~~~~~~~~~~~~~~~~~~s~~~lg~~i~~~~~g~l~dr~~~Grr----~~l~~~~~~~~~~~~~~~~~~~~~~l~  176 (521)
                      +|.+.+++|.+.++.    |++.+++.++..++++++|+++||  +|||    +.+.++..+.  .......+++++.++
T Consensus        27 l~~~l~~~g~s~~~i----G~~~~~~~l~~~l~~~~~g~l~dr--~g~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~l~   98 (382)
T PRK11128         27 WSVWLKGQGYTPETI----GLLLGAGLVARFLGSLLIAPRVKD--PSQLIPALRLLALLTLLF--AVAFWFGAHSFWLLF   98 (382)
T ss_pred             HHHHHHhcCCCHHHH----HHHHHHHHHHHHhhhHHHHHHHhh--hcchHHHHHHHHHHHHHH--HHHHHHhcccHHHHH
Confidence            677788999999666    999999999999999999999999  9994    3333222222  223344568999999


Q ss_pred             HHHHHhhccchhhHhhhhhheeeeecCcchhHHHHHHHHHHHHHHHHHHHH-HHhhcCCchhHHHHHHHHHHHHHHhhhc
Q 039541          177 TIRFVAGFFRAPIMTSVIVLLSEMVSKRWRGQVVIIGFTFFSFGLVSLPAV-AYLSRGSSWKMLYVWTSIPSIVCCIIIY  255 (521)
Q Consensus       177 ~~r~l~G~~~g~~~~~~~~~i~~~~~~~~rg~~~~~~~~~~~~G~~i~~~i-~~~~~~~~wr~~f~~~~~~~~~~~~~~~  255 (521)
                      +.|++.|++.+...+...+++.++  +++|+++.+......++|.++||++ +.+.+++|||..|++.++..++.. +..
T Consensus        99 i~~~l~g~~~~~~~~~~~a~~~~~--~~~~~~a~~~~~~~~~lg~~igp~lgg~l~~~~g~~~~f~~~~~~~~~~~-~~~  175 (382)
T PRK11128         99 VAIGLFNLFFSPLVPLTDALANTW--QKQIGLDYGKVRLWGSIAFVIGSALTGKLVSWFGEQAILWILTAGVASML-LGQ  175 (382)
T ss_pred             HHHHHHHHHHcccccHHHHHHHHH--HhhccCCcchHHHHHHHHHHHHHHHHHHHHHHcChhHHHHHHHHHHHHHH-HHH
Confidence            999999999888888888877776  4678888999999999999999999 567777899999998776555444 333


Q ss_pred             eeeecchhHHHhcCCHHHHHHHHHHHhhhcCCCCCCCccccccCCCCCccccCCCcccccccHHHHhccHHHHHHHHHHH
Q 039541          256 PFISESPRWLFIHGHEAEAMAVLKRLASRSNYQSDYGLESCCLSNMPPKAKNVIPKLDLYSSLKDLFNRKWALRRLLTIM  335 (521)
Q Consensus       256 ~~~~esp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~  335 (521)
                      ++.||.++    +++.++                                 +   ..+...++++++|+|.++...+..+
T Consensus       176 ~~~~~~~~----~~~~~~---------------------------------~---~~~~~~~~~~i~~~~~~~~~~~~~~  215 (382)
T PRK11128        176 LLRPTIMP----QGESRQ---------------------------------Q---ESAGWPAWKALLKEPTVWRFLLCVS  215 (382)
T ss_pred             HccCCCCC----cccccc---------------------------------c---cccccchHHHHHcChhHHHHHHHHH
Confidence            34444311    000000                                 0   0001136788999998877666666


Q ss_pred             HHHHHHHHHHHhHHhhccCCCccHHHHH---HHHHHHhHhHHHHHHHHHhhcCCchHHHHHHHHHHHHHHHHHhcCCchH
Q 039541          336 ALAFGIGVVYFGLLLGVGNLSFNIYLSL---AFNGLLDIPAYLLTFILIERWSRKSSILTFCILSGTCSAICVAIGDEQE  412 (521)
Q Consensus       336 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~i~~~~~~~~~~~~~  412 (521)
                      +........+...+.+.++.+.+.....   .+..+..++..++.+++.||+++|+.+..+....++..+.+...++  .
T Consensus       216 l~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~~r~~~~~~l~~~~~~~~~~~~~~~~~~~--~  293 (382)
T PRK11128        216 LLQGSHAAYYGFSAIYWQAAGYSASTIGYLWSLGVVAEVLIFAFSNRLFRRWSARDLLLLSAICGVVRWGLMGSTTA--L  293 (382)
T ss_pred             HHHHHhHhHHHHHHHHHHHCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhhhh--H
Confidence            5555544343344455555665543333   3344566777788999999999999998888888887666654432  2


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhccccCchhhhhhhHHHHHh-hhhhhhHHHHHHHhhccc-hhHHHHHHHHHHHHHh
Q 039541          413 VLQIGLELASFFSACVAFNVLLVFGTELFTTCVRNSTTSLVRQA-VNLGAAFSPVLISAGRQN-EFLSFGVFGLVVFCFG  490 (521)
Q Consensus       413 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~-~~~g~~~~p~~~~~~~~~-~~~~~~~~~~~~~~~~  490 (521)
                      +..++..++.+++.+...+....+..+. +++++++..++.+.. ..+|..++|.+.|...+. ....+...+++.+++.
T Consensus       294 ~~~~~~~~l~g~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~g~~ig~~i~G~l~~~~g~~~~~~~~~~~~~~~  372 (382)
T PRK11128        294 PWLIVIQILHCGTFTVCHLAAMRYIAAR-PGSEVIRLQALYSALAMGGSIAIMTVLSGFLYQHLGAGVFWVMALVALPAL  372 (382)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHC-CHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHH
Confidence            5566677888888888778888887776 555568888887644 466778999999873221 2244555555555443


Q ss_pred             H
Q 039541          491 F  491 (521)
Q Consensus       491 ~  491 (521)
                      +
T Consensus       373 ~  373 (382)
T PRK11128        373 F  373 (382)
T ss_pred             H
Confidence            3

>PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated

Probab=99.95  E-value=2e-25  Score=249.17  Aligned_cols=327  Identities=13%  Similarity=-0.001  Sum_probs=232.1

Q ss_pred             eeeecceeeCCccccchhhHHHHHHHHHHhhhhhhhccccCCCCchHHHHHHHHHHHHHHHHH---hccccHHHHHHHHH
Q 039541          104 IISDWSLECAGSSILSGLPSSCFFIGCLLGGLALSTLGDSSSLGRKKLLFLSCFAMSITALAT---IFANNIWIYSTIRF  180 (521)
Q Consensus       104 i~~~~~~~~~~~~~~~~~~~s~~~lg~~i~~~~~g~l~dr~~~Grr~~l~~~~~~~~~~~~~~---~~~~~~~~l~~~r~  180 (521)
                      +..+++.+.+.  ...+++.+++.++..++++++|+++||  +|||++++++.++.+++.++.   ..+++++.+++.|+
T Consensus        36 ~~~~~~~~~~~--~~~~~~~~~~~l~~~l~~~~~G~l~Dr--~grk~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~  111 (1146)
T PRK08633         36 LIKAYDGSEQV--ILTAIVNALFLLPFLLLSSPAGFLADK--FSKNRVIRIVKLFEVGLTLLIVLAYYLGWFWLAFAVTF  111 (1146)
T ss_pred             HHHHcCcccHH--HHHHHHHHHHHHHHHHHhhhHhhhccc--ccHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHH
Confidence            33445443322  456999999999999999999999999  999999999887766665554   34578999999999


Q ss_pred             HhhccchhhHhhhhhheeeeecCcchhHHHHHHHHHHHHHHHHHHHHH-HhhcC---------CchhHHHHHHHHHHHHH
Q 039541          181 VAGFFRAPIMTSVIVLLSEMVSKRWRGQVVIIGFTFFSFGLVSLPAVA-YLSRG---------SSWKMLYVWTSIPSIVC  250 (521)
Q Consensus       181 l~G~~~g~~~~~~~~~i~~~~~~~~rg~~~~~~~~~~~~G~~i~~~i~-~~~~~---------~~wr~~f~~~~~~~~~~  250 (521)
                      ++|++.+...+...+++.|++|+++|++++++...+..+|.++|++++ ++...         .+|++.+.+.++...+.
T Consensus       112 l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~ig~~lg~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  191 (1146)
T PRK08633        112 LLGAQSAIYSPAKYGIIPELVGKENLSRANGLLEAFTIVAILAGTALFSFLFESVNGNTPSEILGRIAPAGLVLLAVAVL  191 (1146)
T ss_pred             HHHHHHHhhchHHHhhhHHhcCcccchhhhhHHHHHHHHHHHHHHHHHHHHHHhhccccccccccchHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999999999999994 45443         24555554444444333


Q ss_pred             HhhhceeeecchhHHHhcCCHHHHHHHHHHHhhhcCCCCCCCccccccCCCCCccccCCCcccccccHHHHhccHHHHHH
Q 039541          251 CIIIYPFISESPRWLFIHGHEAEAMAVLKRLASRSNYQSDYGLESCCLSNMPPKAKNVIPKLDLYSSLKDLFNRKWALRR  330 (521)
Q Consensus       251 ~~~~~~~~~esp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~  330 (521)
                      .++..+.+||+|.....+.+. +                                 ...........++.+++++.++..
T Consensus       192 ~~~~~~~~~~~~~~~~~~~~~-~---------------------------------~~~~~~~~~~~~~~l~~~~~~~~~  237 (1146)
T PRK08633        192 GLIFAYRLPKVPAAAPEVFDK-K---------------------------------KYLFPKLLWRNLKLLRSDRVLWLA  237 (1146)
T ss_pred             HHHHHhcCcCCCCCCcccccc-c---------------------------------ccccHHHHHHHHHHHhcCcHHHHH
Confidence            334555677765321100000 0                                 000000111256677888876665


Q ss_pred             HHHHHHHHHHHHHHHHhHHhh-ccCCCccHH----HHHHHHHHHhHhHHHHHHHHHhhcCCchHHHHHHHHHHHHHHHHH
Q 039541          331 LLTIMALAFGIGVVYFGLLLG-VGNLSFNIY----LSLAFNGLLDIPAYLLTFILIERWSRKSSILTFCILSGTCSAICV  405 (521)
Q Consensus       331 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~----~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~i~~~~~~  405 (521)
                      ++...+.++.........+.+ ....+.+..    ......+++.+++.++.+++.||+++++.+.++.++.+++.+++.
T Consensus       238 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~g~~~~~~~ig~~~g~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~  317 (1146)
T PRK08633        238 IIGLSYFWFISQLAQANFPAYAKEVLGLDNTFQVQYLLAASAIGIGIGSLLAGRLSGRHIELGLVPLGALGLALSLFLLP  317 (1146)
T ss_pred             HHHHHHHHHHHHHHHHhhHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHhCCceEccchhHHHHHHHHHHHHHH
Confidence            555555444443333333433 333444333    333455677788999999999999998888888877777776666


Q ss_pred             hcCCchHHHHHHHHHHHHHHHHHHHHHHHHhhccccCchhhhhhhHHHHHhhhhhhhHHHHHHHh
Q 039541          406 AIGDEQEVLQIGLELASFFSACVAFNVLLVFGTELFTTCVRNSTTSLVRQAVNLGAAFSPVLISA  470 (521)
Q Consensus       406 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~p~~~~~  470 (521)
                      +....  +..++..++.+++.+...+...+++.+..|++.||+++|+.+++..+|.++++.+.+.
T Consensus       318 ~~~~~--~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~rg~~~~~~~~~~~lg~~~~~~~~~~  380 (1146)
T PRK08633        318 TAPSL--ASVLVLFFLFGFSAGLFIVPLNALIQFRAPEKELGKVLAANNFLQNVGMLLFLALTTL  380 (1146)
T ss_pred             HhhhH--HHHHHHHHHHHHHHHHhhHHHHHHHhhcCCccchhhhhHHHHHHHHHHHHHHHHHHHH
Confidence            54422  4556677778888888888889999999999999999999999999988777776654

>TIGR00901 2A0125 AmpG-related permease

Probab=99.94  E-value=9.7e-26  Score=218.67  Aligned_cols=311  Identities=16%  Similarity=0.150  Sum_probs=223.7

Q ss_pred             CcceeeecceeeCCccccchhhHHHHHHHHHHhhhhhhhccccCCC-----CchHHH-HHHHHHHHHHHHHHhcc---cc
Q 039541          101 DTTIISDWSLECAGSSILSGLPSSCFFIGCLLGGLALSTLGDSSSL-----GRKKLL-FLSCFAMSITALATIFA---NN  171 (521)
Q Consensus       101 ~~~i~~~~~~~~~~~~~~~~~~~s~~~lg~~i~~~~~g~l~dr~~~-----Grr~~l-~~~~~~~~~~~~~~~~~---~~  171 (521)
                      .|.+.+|+|++.++.    |+.... .+...+ .+++|+++||  +     ||||.+ +.+.++.++..++.++.   .+
T Consensus        11 ~~~~~~~~g~s~~~~----g~~~~~-~~~~~~-~~~~g~~~Dr--~~~~~~Grr~~~l~~~~~~~~~~~~~l~~~~~~~~   82 (356)
T TIGR00901        11 LPYWLRSKNVSLKTI----GFFSLV-GLPYSL-KFLWSPLVDT--VYLPFFGRRRSWLVLTQVLLLSLLLILSFLVPSTD   82 (356)
T ss_pred             HHHHHHHcCCCHHHH----HHHHHH-HHHHHH-HHHHHHHHhc--ccCCCCCccHHHHHHHHHHHHHHHHHHHcCCcchh
Confidence            788999999999776    888655 455555 8999999999  7     898874 66777887877777777   46


Q ss_pred             HHHHHHHHHHhhccchhhHhhhhhheeeeecCcchhHHHHHHHHHHHHHHHHHHHH-HHhhcCCc--------hhHHHHH
Q 039541          172 IWIYSTIRFVAGFFRAPIMTSVIVLLSEMVSKRWRGQVVIIGFTFFSFGLVSLPAV-AYLSRGSS--------WKMLYVW  242 (521)
Q Consensus       172 ~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~rg~~~~~~~~~~~~G~~i~~~i-~~~~~~~~--------wr~~f~~  242 (521)
                      .+.+....++.+++.+...+...+++.|++|+++|+++.++...+..+|.++++.+ +.+....+        ||.+|++
T Consensus        83 l~~l~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~l~~~~g~~~~~~~~wr~~f~i  162 (356)
T TIGR00901        83 LPLLAGLAFLIAFFSATQDIALDAWRLEILSDEELGYGSTIYIVGYRAGMLLSGSLALVLASPEFANTGLITLWGYIFFW  162 (356)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHhhhchHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccccccHHHHHH
Confidence            67778888888999998999999999999999999999999999999999999988 56666666        9999999


Q ss_pred             HHHHHHHHHhhhceeeecchhHHHhcCCHHHHHHHHHHHhhhcCCCCCCCccccccCCCCCccccCCCcccccccHHHHh
Q 039541          243 TSIPSIVCCIIIYPFISESPRWLFIHGHEAEAMAVLKRLASRSNYQSDYGLESCCLSNMPPKAKNVIPKLDLYSSLKDLF  322 (521)
Q Consensus       243 ~~~~~~~~~~~~~~~~~esp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  322 (521)
                      .++..++..++.++..||+++.   +.+.++.++   +.                                 .+.+++++
T Consensus       163 ~ai~~l~~~~~~~~~~~e~~~~---~~~~~~~~~---~~---------------------------------~~~~~~~~  203 (356)
T TIGR00901       163 TALLILPGLLVTLFLAKEPQED---ASVPKPLTQ---AV---------------------------------LKPIREFF  203 (356)
T ss_pred             HHHHHHHHHHHHHHhccCCCcc---cccchhHHH---HH---------------------------------HHHHHHHH
Confidence            9988777664444445664321   000000000   00                                 12455666


Q ss_pred             ccHH---HHHHHHHHHHHHHHHHHHHHhHHhhccCCCccHHHHHHHH---H-HHhHhHHHHHHHHHhhcCCchHHHHHHH
Q 039541          323 NRKW---ALRRLLTIMALAFGIGVVYFGLLLGVGNLSFNIYLSLAFN---G-LLDIPAYLLTFILIERWSRKSSILTFCI  395 (521)
Q Consensus       323 ~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~-~~~~~~~~~~g~l~dr~g~~~~~~~~~~  395 (521)
                      +++.   .+...+..++..+.....+...+.++.+.+.+......+.   + +..+++.++++++.||+|+|+.+..+.+
T Consensus       204 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~g~~~~~~~~~~~~~g~~~~g~l~~r~g~~~~l~~~~~  283 (356)
T TIGR00901       204 QRKNMIQALLLLLLIVLYKLGDSAATVLTTLFLLDMGFSKEEIALVAKINGLLGAILGGLIGGIIMQPLNILYALLLFGI  283 (356)
T ss_pred             HhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHhHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHH
Confidence            6654   3333333333444444444445555555666655443322   2 4567889999999999999998888888


Q ss_pred             HHHHHHHHHHhcC-C--------chHHHHHHHHHHHHHHHHHHHHHHHHhhccccCchhhhhhhHHHHHhhh
Q 039541          396 LSGTCSAICVAIG-D--------EQEVLQIGLELASFFSACVAFNVLLVFGTELFTTCVRNSTTSLVRQAVN  458 (521)
Q Consensus       396 ~~~i~~~~~~~~~-~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~  458 (521)
                      +.++....+.+.. .        ...+......++.+++.+...+...++..|.+|++.||+.+|+.+...+
T Consensus       284 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~  355 (356)
T TIGR00901       284 VQALTNAGFVWLASNGHHDGITFPHLLMLFLTITLEAVTGGLGTVAFVAFLSKLSNPKFGATQMALLSSLSA  355 (356)
T ss_pred             HHHHHHHHHHHHHhcCcccccccchHHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHh
Confidence            7777666554431 1        1124455566677888899999999999999999999999999887654

>PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional

Probab=99.94  E-value=7.2e-25  Score=243.69  Aligned_cols=316  Identities=12%  Similarity=-0.010  Sum_probs=227.5

Q ss_pred             ccchhhHHHHHHHHHHhhhhhhhccccCCCCchHHHHH---HHHHHHHHHHHHhccccHHHHHHHHHHhhccchhhHhhh
Q 039541          117 ILSGLPSSCFFIGCLLGGLALSTLGDSSSLGRKKLLFL---SCFAMSITALATIFANNIWIYSTIRFVAGFFRAPIMTSV  193 (521)
Q Consensus       117 ~~~~~~~s~~~lg~~i~~~~~g~l~dr~~~Grr~~l~~---~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~  193 (521)
                      .+.++..+++.++++++++++|+++||  +|||+++..   ..++.++..+.....+++++++++|+++|++.+...|+.
T Consensus        52 ~~~~l~~~~~~l~~~l~~~~~G~laDr--~~rk~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~~~~l~gi~~a~~~p~~  129 (1140)
T PRK06814         52 ALVTLAGAVFILPFFIFSALAGQLADK--YDKAKLAKILKFAEIGIAALAIYGFHLNSVPLLFAALFLMGIHSALFGPIK  129 (1140)
T ss_pred             HHHHHHHHHHHHHHHHHhhhHHhhhhh--ccHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhhchHH
Confidence            345888999999999999999999999  999997633   323333333334445899999999999999999999999


Q ss_pred             hhheeeeecCcchhHHHHHHHHHHHHHHHHHHHH-HHhhcCCchhHHHHHHHHHHHHHHhhhceeeecchhHHHhcCCHH
Q 039541          194 IVLLSEMVSKRWRGQVVIIGFTFFSFGLVSLPAV-AYLSRGSSWKMLYVWTSIPSIVCCIIIYPFISESPRWLFIHGHEA  272 (521)
Q Consensus       194 ~~~i~~~~~~~~rg~~~~~~~~~~~~G~~i~~~i-~~~~~~~~wr~~f~~~~~~~~~~~~~~~~~~~esp~~~~~~~~~~  272 (521)
                      .+++.|++|+++|++++++.+++.++|.++||++ +++....+|++.|+..++..++.+ ++.+++|+++...  ++...
T Consensus       130 ~a~l~~~~~~~~~~~a~~~~~~~~~ig~~igp~l~g~l~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~--~~~~~  206 (1140)
T PRK06814        130 YSILPDHLNKDELLGANALVEAGTFIAILLGTIIGGLATISGNFVILVALLMGIAVLGW-LASLFIPKTGNAA--PDLKI  206 (1140)
T ss_pred             HHhhHhhcCccccchhhHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHH-HHHhhCCCCCCCC--CCCee
Confidence            9999999999999999999999999999999999 677788899999955555555544 5556666653200  00000


Q ss_pred             HHHHHHHHHhhhcCCCCCCCccccccCCCCCccccCCCcccccccHHHHhccHHHHHHHHHHHHHHHHHHHHHHhHHhhc
Q 039541          273 EAMAVLKRLASRSNYQSDYGLESCCLSNMPPKAKNVIPKLDLYSSLKDLFNRKWALRRLLTIMALAFGIGVVYFGLLLGV  352 (521)
Q Consensus       273 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  352 (521)
                      + ....+                                 +....++.+.+++.++...+...+.++.........|.++
T Consensus       207 ~-~~~~~---------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~  252 (1140)
T PRK06814        207 D-RNIIR---------------------------------STITLLKYAKADKRIWLAILGISWFWLVGAVVLSQLPLLA  252 (1140)
T ss_pred             c-cchHH---------------------------------HHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHhHHHH
Confidence            0 00000                                 0012567788888877766666666555444433445544


Q ss_pred             cC-CCccHH---HHHHHHHHHhHhHHHHHHHHHhhcCCchHHHHHHHHHHHHHHHHHhc------------------CCc
Q 039541          353 GN-LSFNIY---LSLAFNGLLDIPAYLLTFILIERWSRKSSILTFCILSGTCSAICVAI------------------GDE  410 (521)
Q Consensus       353 ~~-~~~~~~---~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~i~~~~~~~~------------------~~~  410 (521)
                      .+ ++.+..   ......+++.++|.++.+++.++..+++.+..+.++.+++.+.+.+.                  ...
T Consensus       253 ~~~~g~~~~~~g~~~~~~~~g~~ig~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~  332 (1140)
T PRK06814        253 KETLGGDENVATLFLAVFSVGVAVGSFLASKLSEGRITLLYVPIGALLMGLFGLDLAFASSSVPAEPAQLKSILVFLSKR  332 (1140)
T ss_pred             HHHcCCchHHHHHHHHHHHHHHHHHHHHHHHHhCCceeeeeehHHHHHHHHHHHHHHhcccccccccccccchhhhhccc
Confidence            43 454433   33455667888999999999988877766665555555544433332                  001


Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHhhccccCchhhhhhhHHHHHhhhhhhhHHHHHHHhh
Q 039541          411 QEVLQIGLELASFFSACVAFNVLLVFGTELFTTCVRNSTTSLVRQAVNLGAAFSPVLISAG  471 (521)
Q Consensus       411 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~p~~~~~~  471 (521)
                      +.+...+..++.+++.+...+...+++.+.+|++.||+++|+.++...+|..+++++.+..
T Consensus       333 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~G~v~g~~~~~~~~~~~ig~~~~g~l  393 (1140)
T PRK06814        333 HGWRILIDLFGLAAAGGLYIVPLFAALQAWANPAHRARVIAANNVLNAAFMVAGTIILALL  393 (1140)
T ss_pred             ccHHHHHHHHHHHHHHHHhHHHHHHHHHhhCCcccceeeeHHHHHHHHHHHHHHHHHHHHH
Confidence            2255566777788888888888999999999999999999999999999999999988753

>PRK09528 lacY galactoside permease; Reviewed

Probab=99.94  E-value=2.4e-25  Score=220.63  Aligned_cols=349  Identities=14%  Similarity=0.022  Sum_probs=218.3

Q ss_pred             CcceeeecceeeCCccccchhhHHHHHHHHHHhhhhhhhccccCCCCchHHHHHHHHHHHHHHHHHh---ccc-----cH
Q 039541          101 DTTIISDWSLECAGSSILSGLPSSCFFIGCLLGGLALSTLGDSSSLGRKKLLFLSCFAMSITALATI---FAN-----NI  172 (521)
Q Consensus       101 ~~~i~~~~~~~~~~~~~~~~~~~s~~~lg~~i~~~~~g~l~dr~~~Grr~~l~~~~~~~~~~~~~~~---~~~-----~~  172 (521)
                      ...+.+++|++..+.    |++.+++.++..++++++|+++||  +|||++++++..+.+++.....   .++     .+
T Consensus        34 ~~~l~~~~g~s~~~~----g~~~s~~~l~~~i~~~~~G~l~Dr--~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  107 (420)
T PRK09528         34 PIWLHDINGLSGTDT----GIIFSANSLFALLFQPLYGLISDK--LGLKKHLLWIISGLLVLFGPFFIYVFAPLLQYNIL  107 (420)
T ss_pred             HHHHHHhcCCCHHHH----HHHHHHHHHHHHHHHHHHHHHHHH--hCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            345567799999666    999999999999999999999999  9999999887666554433221   111     11


Q ss_pred             HHHHHHHHHhhccchhhHhhhhhheeeeecCcchhHHHHHHHHHHHHHHHHHHHHHHhhcCCchhHHHHHHHHHHHHHHh
Q 039541          173 WIYSTIRFVAGFFRAPIMTSVIVLLSEMVSKRWRGQVVIIGFTFFSFGLVSLPAVAYLSRGSSWKMLYVWTSIPSIVCCI  252 (521)
Q Consensus       173 ~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~rg~~~~~~~~~~~~G~~i~~~i~~~~~~~~wr~~f~~~~~~~~~~~~  252 (521)
                      ...++++++.|.+.....+....+..+ . .+++++.++......++|..++|.++..+...+|+++|++.+++.++..+
T Consensus       108 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~g~~~g~~~~~~~~g~~i~~~~~g~l~~~~~~~~f~~~~~~~~~~~~  185 (420)
T PRK09528        108 LGAIVGGIYLGFGFLAGAGAIEAYIER-V-SRRSGFEYGRARMWGSLGWALCAFIAGILFNINPQINFWLGSGSALILLV  185 (420)
T ss_pred             HHHHHHHHHhhhhhccchhhhhhHHHH-H-HhhccccchhhHHhhhHHHHHHHHHHHHHHhcCchHhHHHHHHHHHHHHH
Confidence            122333444444333333333333221 1 24567788888889999999999985444446999999998888777764


Q ss_pred             hhceeeecchhHHHhcCCHHHHHHHHHHHhhhcCCCCCCCccccccCCCCCccccCCCcccccccHHHHhccHHHHHHHH
Q 039541          253 IIYPFISESPRWLFIHGHEAEAMAVLKRLASRSNYQSDYGLESCCLSNMPPKAKNVIPKLDLYSSLKDLFNRKWALRRLL  332 (521)
Q Consensus       253 ~~~~~~~esp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~  332 (521)
                      +.++..+|.++....+   ++.        + .                       +++.......++.+|+|.++...+
T Consensus       186 ~~~~~~~~~~~~~~~~---~~~--------~-~-----------------------~~~~~~~~~~~~~l~~~~~~~l~l  230 (420)
T PRK09528        186 LLFFAKPDAPSTAKVA---NAL--------G-A-----------------------NASAVSLKDALALLKLPKFWFLVL  230 (420)
T ss_pred             HHhcccccccchhhhc---cch--------h-c-----------------------ccccccHHHHHHHccCCCeEeehH
Confidence            4444444432210000   000        0 0                       000001124556778877654443


Q ss_pred             HHHHHHHHHHHHHHhHHhh----ccCCCccH---HHHHHHHHHHhHhHHHHHHHHHhhcCCchHHHHHHHHHHHHHHHHH
Q 039541          333 TIMALAFGIGVVYFGLLLG----VGNLSFNI---YLSLAFNGLLDIPAYLLTFILIERWSRKSSILTFCILSGTCSAICV  405 (521)
Q Consensus       333 ~~~~~~~~~~~~~~~~~~~----~~~~~~~~---~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~i~~~~~~  405 (521)
                      ................+.+    ..+.+.+.   .....+..+...++.++.|++.||+|+|+.+..+..+.++..+++.
T Consensus       231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~l~~~~~~l~~  310 (420)
T PRK09528        231 YVIGVACFYDVFDQQFPNFFASFFATPEQGTRVFGYLNSFQVFLEALIMFFAPFIINRIGAKNALLLAGTIMAVRIIGSG  310 (420)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHH
Confidence            3323222221111112222    11222222   2333444566778899999999999999999888888888777766


Q ss_pred             hcCCchHHHHHHHHHHHHHHHHHHHHHHHHhhccccCchhhhhhhHH-HHHhhhhhhhHHHHHHHhh--ccchhHHHHHH
Q 039541          406 AIGDEQEVLQIGLELASFFSACVAFNVLLVFGTELFTTCVRNSTTSL-VRQAVNLGAAFSPVLISAG--RQNEFLSFGVF  482 (521)
Q Consensus       406 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~-~~~~~~~g~~~~p~~~~~~--~~~~~~~~~~~  482 (521)
                      +..+.  +..+...++.+++.+...+....+..|.+|++.+++..+. .++...+|.+++|.+.|+.  ..++...|.+.
T Consensus       311 ~~~~~--~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~lg~~ig~~~~G~l~~~~G~~~~f~~~  388 (420)
T PRK09528        311 FATGP--LEVSILKLLHAFEVPFLLVGVFKYITLNFDVRLSATIYLVGFQFAKQLGAVFLSTLAGNLYDSIGFQGTYLIL  388 (420)
T ss_pred             hcccH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccceeeeeeehHHHHHHHHHHHHHHHHHHHHHhhCchHHHHHH
Confidence            54433  4455556666666666667777888999999999888765 5667789999999999873  34677778877


Q ss_pred             HHHHHHHhHhhh
Q 039541          483 GLVVFCFGFFVV  494 (521)
Q Consensus       483 ~~~~~~~~~~~~  494 (521)
                      +++.++..++.+
T Consensus       389 ~~~~~i~~~~~~  400 (420)
T PRK09528        389 GGIVLLFTLISV  400 (420)
T ss_pred             HHHHHHHHHHHH
Confidence            777666555443

>PRK10207 dipeptide/tripeptide permease B; Provisional

Probab=99.94  E-value=9.6e-25  Score=217.86  Aligned_cols=381  Identities=10%  Similarity=-0.033  Sum_probs=240.8

Q ss_pred             CcceeeecceeeCCccccchhhHHHHHHHHHHhhhhhhhccccCCCCchHHHHHHHHHHHHHHHHHhccccHHH-HHHHH
Q 039541          101 DTTIISDWSLECAGSSILSGLPSSCFFIGCLLGGLALSTLGDSSSLGRKKLLFLSCFAMSITALATIFANNIWI-YSTIR  179 (521)
Q Consensus       101 ~~~i~~~~~~~~~~~~~~~~~~~s~~~lg~~i~~~~~g~l~dr~~~Grr~~l~~~~~~~~~~~~~~~~~~~~~~-l~~~r  179 (521)
                      ...+.+++|++.++.    +++.+.+.....+..+++|+++|| ++||||+++++.+++++++++++++.+... ++++|
T Consensus        38 ~~yl~~~lg~~~~~a----~~i~~~~~~~~~~~~~~~G~laDr-~~G~r~~~~~g~~~~~~g~~~~~~~~~~~~ll~~~~  112 (489)
T PRK10207         38 AVFFVKQLGFSQEQA----FITFGAFAALVYGLISIGGYVGDH-LLGTKRTIVLGAIVLAIGYFMTGMSLLKPDLIFIAL  112 (489)
T ss_pred             HHHHHHHcCCCHHHH----HHHHHHHHHHHHHHHhhHHHhhhh-ccchHHHHHHHHHHHHHHHHHHHHhccchhHHHHHH
Confidence            345677899998776    999999998888889999999996 369999999999999999999999877554 55899


Q ss_pred             HHhhccchhhHhhhhhheeeeecCc--chhHHHHHHHHHHHHHHHHHHHH-HHhhcCCchhHHHHHHHHHHHHHHhhhce
Q 039541          180 FVAGFFRAPIMTSVIVLLSEMVSKR--WRGQVVIIGFTFFSFGLVSLPAV-AYLSRGSSWKMLYVWTSIPSIVCCIIIYP  256 (521)
Q Consensus       180 ~l~G~~~g~~~~~~~~~i~~~~~~~--~rg~~~~~~~~~~~~G~~i~~~i-~~~~~~~~wr~~f~~~~~~~~~~~~~~~~  256 (521)
                      +++|+|.|...+...+++.|.+|++  +|+++++++..+.++|.++||.+ +++.++.|||+.|++.++..++.. +.+.
T Consensus       113 ~l~~ig~g~~~~~~~~li~~~~p~~~~~~~~~~~~~~~~~nig~~~g~~l~g~l~~~~gw~~~F~i~~i~~~~~~-~~~~  191 (489)
T PRK10207        113 GTIAVGNGLFKANPASLLSKCYPPKDPRLDGAFTLFYMSINIGSLISLSLAPVIADKFGYSVTYNLCGAGLIIAL-LVYF  191 (489)
T ss_pred             HHHHhccccccCCHHHHHHHhcCCCchhhhcchhHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHH-HHHH
Confidence            9999999999999999999999877  45889999999999999999988 778888899999998755333333 3333


Q ss_pred             eeecchhHHH--hcCCHHHHHHHHH----------HHhhhcCCCCCCCccc-cccCCCCC--ccccCCCcccccccHHHH
Q 039541          257 FISESPRWLF--IHGHEAEAMAVLK----------RLASRSNYQSDYGLES-CCLSNMPP--KAKNVIPKLDLYSSLKDL  321 (521)
Q Consensus       257 ~~~esp~~~~--~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~-~~~~~~~~--~~~~~~~~~~~~~~~~~l  321 (521)
                      ..++..+...  .+++..+......          .... ........... ........  --.++.+       ..++
T Consensus       192 ~~~~~~~~~~~~~~~~~~d~~~~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~i~~~~f~~~~~~-------~~~~  263 (489)
T PRK10207        192 ACRGMVKDIGSEPDHKPMSFSKLLLVLLGSVVMIFVCAW-LMHNVEVANLVLIVLSIVVTIIFFREAFK-------LDKT  263 (489)
T ss_pred             HcchhhcccCCCCCccchhhhhHHHHHHHHHHHHHHHHH-HHhhhhHHHHHHHHHHHHHHHHHHHHHhc-------CCHH
Confidence            3332211000  0000001000000          0000 00000000000 00000000  0000000       0134


Q ss_pred             hccHHHHHHHHH--HHHHHHHHHHHHHhHHhhccC-C-----Cc--cHHHHHHHHHHHhHhHHHHHHHHHhhcCCchH--
Q 039541          322 FNRKWALRRLLT--IMALAFGIGVVYFGLLLGVGN-L-----SF--NIYLSLAFNGLLDIPAYLLTFILIERWSRKSS--  389 (521)
Q Consensus       322 ~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~-~-----~~--~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~--  389 (521)
                      +|+|.+....+.  ....+.......+.++.+.++ .     |.  .+.....+..+..++.+++.+++.||+++|+.  
T Consensus       264 ~r~r~~~~~~l~~~~~~f~~~~~q~~~~l~l~~~~~~~~~~~G~~i~~~~~~~~n~~~iii~~pl~~~l~~rl~~r~~~~  343 (489)
T PRK10207        264 GRNKMFVAFVLMLEAVVFYILYAQMPTSLNFFAINNVHHEILGFSINPVSFQALNPFWVVVASPILAGIYTHLGSKGKDL  343 (489)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHhccccccceEECHHHHHhHhHHHHHHHHHHHHHHHHHHhhCCCCC
Confidence            454443322211  222333333333334444432 1     21  22333344445566777788999999998863  


Q ss_pred             -----HHHHHHHHHHHHHHHH-----hcC---CchHHHHHHHHHHHHHHHHHHHHHHHHhhccccCchhhhhhhHHHHHh
Q 039541          390 -----ILTFCILSGTCSAICV-----AIG---DEQEVLQIGLELASFFSACVAFNVLLVFGTELFTTCVRNSTTSLVRQA  456 (521)
Q Consensus       390 -----~~~~~~~~~i~~~~~~-----~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~  456 (521)
                           +.+++++.+++++.+.     ...   ..+.++.....++.+++.....+....++.+..|++.++.++|+.+..
T Consensus       344 ~~~~k~~~G~~l~~~~~~~~~~~~~~~~~~~~~~s~~~~i~~~~l~g~Ge~~~~~~g~~~~~~~aP~~~~g~~~g~~~l~  423 (489)
T PRK10207        344 SMPMKFTLGMFLCSLGFLTAAAAGMWFADAQGLTSPWFIVLVYLFQSLGELFISALGLAMIAALVPQHLMGFILGMWFLT  423 (489)
T ss_pred             CcHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCccCHHHHHHHHHHHHHHHHHHhHHHHHHHHHhChHHHHHHHHHHHHHH
Confidence                 6677777776664331     111   122366777888999999999999999999999999999999999999


Q ss_pred             hhhhhhHHHHHHHhhc------------cchhHHHHHHHHHHHHHhHhhhc
Q 039541          457 VNLGAAFSPVLISAGR------------QNEFLSFGVFGLVVFCFGFFVVF  495 (521)
Q Consensus       457 ~~~g~~~~p~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~  495 (521)
                      ..+|+.++..+.....            ..+...|...++.+++..++.+.
T Consensus       424 ~~ig~~lg~~l~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~v~~~~  474 (489)
T PRK10207        424 QAAAFLLGGYVATFTAVPDNITDPLETLPVYTNVFGKIGLVTLGVAVVMAL  474 (489)
T ss_pred             HHHHHHHHHHHHHHhccccccccchhhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence            9999998887775321            12355666666666655554433

>PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily

Probab=99.94  E-value=6.4e-24  Score=211.10  Aligned_cols=347  Identities=15%  Similarity=0.074  Sum_probs=253.0

Q ss_pred             CcceeeecceeeCCccccchhhHHHHHHHHHHhhhhhhhccccCCCCchHHHHHHHHHHHHHHHHHhcc-----ccHHHH
Q 039541          101 DTTIISDWSLECAGSSILSGLPSSCFFIGCLLGGLALSTLGDSSSLGRKKLLFLSCFAMSITALATIFA-----NNIWIY  175 (521)
Q Consensus       101 ~~~i~~~~~~~~~~~~~~~~~~~s~~~lg~~i~~~~~g~l~dr~~~Grr~~l~~~~~~~~~~~~~~~~~-----~~~~~l  175 (521)
                      .+-+..+..-|+    ..++++.++..+...+.++++|.++||  ++||++++.+.++.++..++.++.     .+.+.+
T Consensus        33 ~~wlv~~lt~S~----~~valv~~a~~LP~~Llsl~aG~laDr--~drrrili~~~~~~~~~~~~L~~l~~~~~~~~~~L  106 (524)
T PF05977_consen   33 LAWLVTQLTGSP----LMVALVQAASTLPILLLSLFAGALADR--FDRRRILILSQLLRALVALLLAVLAFFGLLSPWLL  106 (524)
T ss_pred             HHHHHHHHhCCH----HHHHHHHHHHHHHHHHHHHHHHHHhhc--ccchHHHHHHHHHHHHHHHHHHHHHHhCcCCHHHH
Confidence            344444444444    556999999999999999999999999  999999999888877665554432     478999


Q ss_pred             HHHHHHhhccchhhHhhhhhheeeeecCcchhHHHHHHHHHHHHHHHHHHHH-HHhhcCCchhHHHHHHHHHHHHHHhhh
Q 039541          176 STIRFVAGFFRAPIMTSVIVLLSEMVSKRWRGQVVIIGFTFFSFGLVSLPAV-AYLSRGSSWKMLYVWTSIPSIVCCIII  254 (521)
Q Consensus       176 ~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~rg~~~~~~~~~~~~G~~i~~~i-~~~~~~~~wr~~f~~~~~~~~~~~~~~  254 (521)
                      ++.-++.|++.+...|+..+++.|..|+++...+.++.+...++..++||.+ |.++...|-.+.|++.++..++.. +.
T Consensus       107 l~~~fl~g~~~a~~~PA~~A~ip~lV~~~~L~~A~al~s~~~niar~iGPalgG~Lva~~G~~~~f~inalsfl~~i-~~  185 (524)
T PF05977_consen  107 LILTFLLGIGSAFFNPAWQAIIPELVPKEDLPAANALNSISFNIARIIGPALGGILVAFFGAAAAFLINALSFLISI-LA  185 (524)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhccHhhHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHH-HH
Confidence            9999999999999999999999999999999999999999999999999999 566666788889998887666554 33


Q ss_pred             ceeeecchhHHHhcCCHHHHHHHHHHHhhhcCCCCCCCccccccCCCCCccccCCCcccccccHHHHhccHHHHHHHHHH
Q 039541          255 YPFISESPRWLFIHGHEAEAMAVLKRLASRSNYQSDYGLESCCLSNMPPKAKNVIPKLDLYSSLKDLFNRKWALRRLLTI  334 (521)
Q Consensus       255 ~~~~~esp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~  334 (521)
                      ...++..++    +++ ...++..+.+                                 ++.++-+.++|.++..++..
T Consensus       186 l~~~~~~~~----~~~-~~~e~~~~~l---------------------------------~~G~ryv~~~~~l~~~l~~~  227 (524)
T PF05977_consen  186 LLRWKPPPP----PSS-LPRERFFSAL---------------------------------REGLRYVRSSPPLRSVLLRS  227 (524)
T ss_pred             HHHcccccc----ccc-cchhhhhhhH---------------------------------HHHHHHHhcchHHHHHHHHH
Confidence            333332211    000 0001111111                                 12556666777766555444


Q ss_pred             HHHHHHHHHHHHhHHhhccC-CCccHHH---HHHHHHHHhHhHHHHHHHHHhhcCCchHHHHHHHHHHHHHHHHHhcCCc
Q 039541          335 MALAFGIGVVYFGLLLGVGN-LSFNIYL---SLAFNGLLDIPAYLLTFILIERWSRKSSILTFCILSGTCSAICVAIGDE  410 (521)
Q Consensus       335 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~---~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~i~~~~~~~~~~~  410 (521)
                      .++.+......-.+|.+.++ ++.+...   .....+++.++|+++.+++.+|+++++++..+.++.+++++.+.+.++.
T Consensus       228 ~~~~l~~~a~~aLlPl~a~~~l~~~a~~yGll~a~~gvGai~Gal~~~~l~~~~~~~~lv~~~~~~~a~~~~~lal~~~~  307 (524)
T PF05977_consen  228 FLFNLFASAVWALLPLFARDVLGGGASGYGLLLAAFGVGAILGALLLPRLRRRLSSRRLVLLASLLFALALLLLALSPSF  307 (524)
T ss_pred             HHHHHhhhHHHHhhhHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHHhhcccCcchhhHHHHHHHHHHHHHHhcchHH
Confidence            44444333333445665543 4444433   3355678888999999999999999998888888888887777765544


Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHhhccccCchhhhhhhHHHHHhhhhhhhHHHHHHHhh--ccchhHHHHHHHHHHHH
Q 039541          411 QEVLQIGLELASFFSACVAFNVLLVFGTELFTTCVRNSTTSLVRQAVNLGAAFSPVLISAG--RQNEFLSFGVFGLVVFC  488 (521)
Q Consensus       411 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~p~~~~~~--~~~~~~~~~~~~~~~~~  488 (521)
                        +...+.+++.|++.........+...+..|++.||+++++..+....+..+|.++.|..  ..+....+.+.++..++
T Consensus       308 --~~~~~~l~l~G~~~~~~~~~~~t~~Q~~~P~~~~GRv~si~~~~~~g~~~lGsll~G~la~~~g~~~al~~a~~~lll  385 (524)
T PF05977_consen  308 --WLALIALFLAGAAWIIANSSLNTLVQLSVPDWVRGRVFSIYQMVFFGGMPLGSLLWGFLADHFGVRTALLIAGAALLL  385 (524)
T ss_pred             --HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHH
Confidence              66677788888888888888899999999999999999999998888888888888863  33455566666655555


Q ss_pred             HhHhhh
Q 039541          489 FGFFVV  494 (521)
Q Consensus       489 ~~~~~~  494 (521)
                      +.++..
T Consensus       386 ~~~~~~  391 (524)
T PF05977_consen  386 SALIAL  391 (524)
T ss_pred             HHHHHH
Confidence            554443

EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function [].

>TIGR00882 2A0105 oligosaccharide:H+ symporter

Probab=99.93  E-value=4.2e-24  Score=210.17  Aligned_cols=345  Identities=13%  Similarity=0.057  Sum_probs=229.1

Q ss_pred             ceeeecceeeCCccccchhhHHHHHHHHHHhhhhhhhccccCCCCchHHHHHHHHHHHHHHHHH---hcc-----ccHHH
Q 039541          103 TIISDWSLECAGSSILSGLPSSCFFIGCLLGGLALSTLGDSSSLGRKKLLFLSCFAMSITALAT---IFA-----NNIWI  174 (521)
Q Consensus       103 ~i~~~~~~~~~~~~~~~~~~~s~~~lg~~i~~~~~g~l~dr~~~Grr~~l~~~~~~~~~~~~~~---~~~-----~~~~~  174 (521)
                      .+.+++|.+..+.    |++.+.+.++..+++++.|+++||  +|||+.++.++...+++....   .+.     +.+..
T Consensus        28 ~~~~~~g~s~~~~----g~~~~~~~l~~~i~~~~~G~l~Dr--~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  101 (396)
T TIGR00882        28 WLHDVNGLSKTDT----GIVFSCISLFSILFQPLFGLISDK--LGLKKHLLWIISGLLVLFAPFFIYVFGPLLQSNILVG  101 (396)
T ss_pred             HHHHhcCCCHHHH----HHHHHHHHHHHHHHHHHHHHHHHH--hCcHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Confidence            3456789998666    999999999999999999999999  999999988776665544332   222     22345


Q ss_pred             HHHHHHHhhccchhhHhhhhhheeeeecCcchhHHHHHHHHHHHHHHHHHHHHHHhhcCCchhHHHHHHHHHHHHHHhhh
Q 039541          175 YSTIRFVAGFFRAPIMTSVIVLLSEMVSKRWRGQVVIIGFTFFSFGLVSLPAVAYLSRGSSWKMLYVWTSIPSIVCCIII  254 (521)
Q Consensus       175 l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~rg~~~~~~~~~~~~G~~i~~~i~~~~~~~~wr~~f~~~~~~~~~~~~~~  254 (521)
                      +++.|++.|++.+...+....++.|..  +++++..+......++|.+++|.++..+...+||++|++.+++.++..++.
T Consensus       102 ~~~~~~~~g~~~~~~~~~~~~~~~~~~--~~~~~~~g~~~~~~~~g~~~g~~~~g~l~~~~~~~~f~~~~~~~~~~~~~~  179 (396)
T TIGR00882       102 AIVGGLYLGFVFSAGAGAIEAYIEKVS--RNSNFEYGKARMFGCVGWALCASIAGILFSIDPQIVFWLGSGFALILMLLL  179 (396)
T ss_pred             HHHHHHHHHHHhccchhhHHHHHHHhh--hhcccccchhhhhcccHHHHHHHHHhhhhccCchHHHHHHHHHHHHHHHHH
Confidence            567789999988888888877776653  334566777778889999999999666556799999999988888776444


Q ss_pred             ceeeecchhHHHhcCCHHHHHHHHHHHhhhcCCCCCCCccccccCCCCCccccCCCcccccccHHHHhccHHHHHHHHHH
Q 039541          255 YPFISESPRWLFIHGHEAEAMAVLKRLASRSNYQSDYGLESCCLSNMPPKAKNVIPKLDLYSSLKDLFNRKWALRRLLTI  334 (521)
Q Consensus       255 ~~~~~esp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~  334 (521)
                      +...||+|+.       ++.+         ...+               . ++   +.....+.++++|+|.++...+..
T Consensus       180 ~~~~~~~~~~-------~~~~---------~~~~---------------~-~~---~~~~~~~~~~~l~~~~~~~~~l~~  224 (396)
T TIGR00882       180 MFAKPKAPSS-------ATVA---------NALG---------------A-NA---SAFSLKLALELFRQRKFWMFVLYV  224 (396)
T ss_pred             HHhCCCCchh-------hhhh---------cccc---------------c-cc---CCCCHHHHHHHHcCCcHHHHHHHH
Confidence            4444444321       0000         0000               0 00   001112567888998766554444


Q ss_pred             HHHHHHHHHHHHhHHhhcc----CCCccH---HHHHHHHHHHhHhHHHHHHHHHhhcCCchHHHHHHHHHHHHHHHHHhc
Q 039541          335 MALAFGIGVVYFGLLLGVG----NLSFNI---YLSLAFNGLLDIPAYLLTFILIERWSRKSSILTFCILSGTCSAICVAI  407 (521)
Q Consensus       335 ~~~~~~~~~~~~~~~~~~~----~~~~~~---~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~i~~~~~~~~  407 (521)
                      +.............+.+.+    +.+.+.   .....+..+...++.+..+++.||+|+|+.+.++..+.++........
T Consensus       225 ~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~g~~~~~~~i~~~~~~~~~g~l~~r~g~~~~l~~~~~l~~l~~~~~~~~  304 (396)
T TIGR00882       225 VGVACVYDVFDQQFANFFTSFFATPQQGTRVFGYVTTMGELLNALIMFCAPLIINRIGAKNALLIAGTIMSVRIIGSSFA  304 (396)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHhc
Confidence            3333322222111222222    122222   223344456677788899999999999999988888877776665543


Q ss_pred             CCchHHHHHHHHHHHHHHHHHHHHHHHHhhccccCchhhhhhhHH-HHHhhhhhhhHHHHHHHhh--ccchhHHHHHHHH
Q 039541          408 GDEQEVLQIGLELASFFSACVAFNVLLVFGTELFTTCVRNSTTSL-VRQAVNLGAAFSPVLISAG--RQNEFLSFGVFGL  484 (521)
Q Consensus       408 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~-~~~~~~~g~~~~p~~~~~~--~~~~~~~~~~~~~  484 (521)
                      .+.  +..++..++.+++..........+..+..|++.++++.+. .+....+|++++|.+.|+.  ..++...|.+.++
T Consensus       305 ~~~--~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~at~~~~~~~~~~~lg~~~~~~l~G~l~~~~G~~~~f~~~~~  382 (396)
T TIGR00882       305 TTA--LEVVILKMLHAFEVPFLLVGCFKYITSQFDVRLSATIYLIGFQFAKQLAMIFLSTLAGNMYDSIGFQGAYLVLGC  382 (396)
T ss_pred             CCh--HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcceEEEeehHHHHHHHHHHHHHHHHhHHHHHHhcccHHHHHHHHH
Confidence            332  4455556666666555555666677788888888887766 5678899999999999873  3467788888777


Q ss_pred             HHHHHhHh
Q 039541          485 VVFCFGFF  492 (521)
Q Consensus       485 ~~~~~~~~  492 (521)
                      +.++..+.
T Consensus       383 ~~~i~~~~  390 (396)
T TIGR00882       383 IVLLFTLI  390 (396)
T ss_pred             HHHHHHHH
Confidence            77665544

>KOG3764 consensus Vesicular amine transporter [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.93  E-value=3.1e-26  Score=207.69  Aligned_cols=331  Identities=16%  Similarity=0.078  Sum_probs=232.7

Q ss_pred             ccchhhHHHHHHHHHHhhhhhhhccccCCCCchHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHhhccchhhHhhhhhh
Q 039541          117 ILSGLPSSCFFIGCLLGGLALSTLGDSSSLGRKKLLFLSCFAMSITALATIFANNIWIYSTIRFVAGFFRAPIMTSVIVL  196 (521)
Q Consensus       117 ~~~~~~~s~~~lg~~i~~~~~g~l~dr~~~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~  196 (521)
                      .++|++.+.+.+.+.+.+++.|.+.||  +|+|-.+++|+.++.+++++.++.+++++++++|.+||+|.+....+..++
T Consensus       106 ~~iG~LFaskA~~qllvnp~~G~l~~~--iGy~ipm~~Gl~vmf~sTilFafg~sy~~l~vAR~LQgvgsA~~~tsglam  183 (464)
T KOG3764|consen  106 TQIGLLFASKALVQLLVNPFFGNLIDR--IGYKIPMVAGLFVMFLSTILFAFGNSYPMLFVARSLQGVGSAFADTSGLAM  183 (464)
T ss_pred             cchhHHHHHHHHHHHHhcccchhhHHH--hccccHHHHHHHHHHHHHHHHHHcchhHHHHHHHHHhhhhHHHHHhhhHHH
Confidence            556999999999999999999999999  999999999999999999999999999999999999999999999999999


Q ss_pred             eeeeecCcc-hhHHHHHHHHHHHHHHHHHHHH-HHhhcCCchhHHHHHHHHHHHHHHhhhceeeecchhHHHhcCCHHHH
Q 039541          197 LSEMVSKRW-RGQVVIIGFTFFSFGLVSLPAV-AYLSRGSSWKMLYVWTSIPSIVCCIIIYPFISESPRWLFIHGHEAEA  274 (521)
Q Consensus       197 i~~~~~~~~-rg~~~~~~~~~~~~G~~i~~~i-~~~~~~~~wr~~f~~~~~~~~~~~~~~~~~~~esp~~~~~~~~~~~~  274 (521)
                      ++|.+|+++ |++++|+...+.++|.++||.+ |.+-+..|.+.+|++.+++.++...+.++.++.+..           
T Consensus       184 lAd~f~~d~er~~vmGialgfislG~lvgPpfGGilYe~~Gk~aPFlVL~~v~Lld~~L~l~vi~p~~~-----------  252 (464)
T KOG3764|consen  184 LADVFPEDNERGSVMGIALGFISLGVLVGPPFGGILYEFAGKSAPFLVLAIVLLLDGALQLLVIEPTEM-----------  252 (464)
T ss_pred             HHHHcccchhhhHHHHHHHHHHhccceecCCcccchHhhcCCcCcHHHHHHHHHHHHHHHHheeCcccc-----------
Confidence            999998765 7999999999999999999999 566677899999999999999998555555544311           


Q ss_pred             HHHHHHHhhhcCCCCCCCccccccCCCCCccccCCCcccccccHHHHhccHHHHHHHHHHHHHHHHHHHHHHhHHhhcc-
Q 039541          275 MAVLKRLASRSNYQSDYGLESCCLSNMPPKAKNVIPKLDLYSSLKDLFNRKWALRRLLTIMALAFGIGVVYFGLLLGVG-  353 (521)
Q Consensus       275 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-  353 (521)
                                +++                       ...+..++++++++|..+...........+..+.--.++.+.. 
T Consensus       253 ----------~~~-----------------------~~~~~~~~~~Ll~dP~I~~~agai~~~n~~lafLePtlslwm~e  299 (464)
T KOG3764|consen  253 ----------DPD-----------------------STEQGTPMWSLLMDPYILLIAGAITFSNSSLAFLEPTLSLWMLE  299 (464)
T ss_pred             ----------Ccc-----------------------ccccCccHHHHHhCchHhhhhcchhhccchHHHhCcccHHHHHH
Confidence                      000                       0000137889999997554433333333333333323334332 


Q ss_pred             CCC---ccHHHHHHHHHHHhHhHHHHHHHHHhhcC--CchHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHH
Q 039541          354 NLS---FNIYLSLAFNGLLDIPAYLLTFILIERWS--RKSSILTFCILSGTCSAICVAIGDEQEVLQIGLELASFFSACV  428 (521)
Q Consensus       354 ~~~---~~~~~~~~~~~~~~~~~~~~~g~l~dr~g--~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  428 (521)
                      +..   ...........+.-.++..+.|.+.||++  |......+.+..++++....+.....  .+++-.+..+++.+.
T Consensus       300 ~m~~p~w~~G~~fLp~~~~y~ig~~lfg~la~k~~~~~wl~~~~gl~~~G~~~~~iP~~~~~~--~L~vp~~~l~~~i~~  377 (464)
T KOG3764|consen  300 TMFTPGWEVGLAFLPASLSYAIGTNLFGKLADKYPHLRWLLSLGGLATVGVSSGPIPFATSIA--QLWVPNFGLGFGIGL  377 (464)
T ss_pred             hccCCCcceeeeecccccchhccCchHHHHHHhcCchhHHHHHHHHHHHHHHhchhHhhhhHH--HHhhhhHHHHHHHHH
Confidence            222   22333344456677889999999999999  54444445555554444444443332  233333333444443


Q ss_pred             HHHHH---HHhhccccCch---hhhhhhHHHHHhhhhhhhHHHHHHHhh--ccchhHHHHHHHHHHHHHhHhhhc
Q 039541          429 AFNVL---LVFGTELFTTC---VRNSTTSLVRQAVNLGAAFSPVLISAG--RQNEFLSFGVFGLVVFCFGFFVVF  495 (521)
Q Consensus       429 ~~~~~---~~~~~~~~~~~---~r~~~~~~~~~~~~~g~~~~p~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~  495 (521)
                      ..+..   ..+..|.-..+   .-|...++......+|.++||.+.|..  ..++.+...+.++..++-.-+..+
T Consensus       378 ~dasl~P~l~~lvd~rh~s~~~vYGsVyaIad~a~sla~a~GP~~gg~iv~~iGF~wl~~iig~~n~iyapvl~l  452 (464)
T KOG3764|consen  378 ADASLIPTLGYLVDPRHVSGFNVYGSVYAIADAAFSLAYAIGPTFGGSLVEAIGFEWLMTIIGILNLIYAPVLLL  452 (464)
T ss_pred             HHHHHhhhhHHhcchhhccccceeeeHHHHHHHHHHHhhhccccccchheeehhHHHHHHHHHHHHHHHHHHHHH
Confidence            33322   23333332223   457888899989999999999999874  345666666666666665544433

>TIGR00806 rfc RFC reduced folate carrier

Probab=99.93  E-value=7.2e-24  Score=200.98  Aligned_cols=345  Identities=12%  Similarity=0.016  Sum_probs=226.8

Q ss_pred             CcceeeecceeeCC-ccccchhhHHHHHHHHHHhhhhhhhccccCCCCchHHHHHHHHHHHHHHHHHhccccHHHHHHHH
Q 039541          101 DTTIISDWSLECAG-SSILSGLPSSCFFIGCLLGGLALSTLGDSSSLGRKKLLFLSCFAMSITALATIFANNIWIYSTIR  179 (521)
Q Consensus       101 ~~~i~~~~~~~~~~-~~~~~~~~~s~~~lg~~i~~~~~g~l~dr~~~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r  179 (521)
                      .|.+.+|+|++.+| .    |.+.++++.++++++++.|+++||  +|.|+++.++.+.+++.+++.++++++..+.+.|
T Consensus        49 ~p~L~~elglT~~qv~----G~I~s~F~ysYal~qIp~GlLaDr--lG~K~vL~l~~l~Wsl~t~L~~fa~Sl~~L~i~R  122 (511)
T TIGR00806        49 TPYLLTVLNFTEETVT----NEIIPVLPYSHLAVLVPVFLLTDY--LRYKPVLVLQALSFVCVWLLLLLGTSVWHMQLME  122 (511)
T ss_pred             HHHHHHHcCCCHHHhc----chHHHHHHHHHHHHHHHHHHHHHH--hCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            78999999999977 6    999999999999999999999999  9999999999999999999999999999999999


Q ss_pred             HHhhccchhhHhhhhhheeeeecCcchhHHHHHHHHHHHHHHHHHHHHHHhhcCCchhHHHHHH--HHHHHHHHhhhcee
Q 039541          180 FVAGFFRAPIMTSVIVLLSEMVSKRWRGQVVIIGFTFFSFGLVSLPAVAYLSRGSSWKMLYVWT--SIPSIVCCIIIYPF  257 (521)
Q Consensus       180 ~l~G~~~g~~~~~~~~~i~~~~~~~~rg~~~~~~~~~~~~G~~i~~~i~~~~~~~~wr~~f~~~--~~~~~~~~~~~~~~  257 (521)
                      ++.|++.|... +...++..|+|+++|+++.++..++..+|.+++++++..+..+|||+.+.+.  ...+....++..++
T Consensus       123 ~llGvaEA~~~-A~~syI~~WfP~kER~ratsi~~sg~~vG~~Ia~~L~qll~s~gWr~y~~Ln~Isl~s~~~a~~~a~~  201 (511)
T TIGR00806       123 VFYSVTMAARI-AYSSYIFSLVPPSRYQRAAAYSRAAVLLGVFLSSVLGQLLVTLGWISYSTLNIISLVFMTFSVFLALF  201 (511)
T ss_pred             HHHHHHHHHHH-HHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHh
Confidence            99999999999 9999999999999999999999999999999999884436678999855443  22233333366677


Q ss_pred             eecchhHHHhcCCHHHHHHHHHHHhhhcCCCCCCCccccccCCCCCccccCCC-----cccccccHHHHhccHHHHHHHH
Q 039541          258 ISESPRWLFIHGHEAEAMAVLKRLASRSNYQSDYGLESCCLSNMPPKAKNVIP-----KLDLYSSLKDLFNRKWALRRLL  332 (521)
Q Consensus       258 ~~esp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~l~~~~~~~~~~~  332 (521)
                      +|..++.+.-+++.+....    .   .++. +..    ..++...+.+..+.     -......+++..+++.+....+
T Consensus       202 LP~~~~sl~f~~~~~~~~~----~---~~~~-~~~----~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~y~n~~vl~WSl  269 (511)
T TIGR00806       202 LKRPKRSLFFNRLEDVRGA----L---PCEL-DQM----VPGPGGKLEDYLGTCRDSFLVRMLSELVTIYRNPQLLLWSL  269 (511)
T ss_pred             CCCCchhhhhccccccccc----c---cccc-ccC----CCCCccccchhhhhhhhHHHHHHHHHHHHHhcCcchhhhhH
Confidence            8865543332221110000    0   0000 000    00000000000000     0112234556677776554444


Q ss_pred             HHHHHHHHHH-HHHHhHHhhccCCC-cc--HHHHHHHHHHHhHhHHHHHHHHHhhcCCchHHH--HHHHHHHHHHHHHHh
Q 039541          333 TIMALAFGIG-VVYFGLLLGVGNLS-FN--IYLSLAFNGLLDIPAYLLTFILIERWSRKSSIL--TFCILSGTCSAICVA  406 (521)
Q Consensus       333 ~~~~~~~~~~-~~~~~~~~~~~~~~-~~--~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~--~~~~~~~i~~~~~~~  406 (521)
                      -..+...+.. ...|...++-...+ .+  ....-.+..+.+.++.+..|++-.++.+.-.+.  +..++.+..++++..
T Consensus       270 Wwa~a~~g~~qv~~Y~Q~LW~~v~~~~~~yNG~veA~~tllga~~a~~ag~~~~~w~~~~~l~l~v~s~~~~gll~~m~~  349 (511)
T TIGR00806       270 WWVFNSAGYYLITYYVHTLWGTLDESLNKYNGAVDAASTLLGAITSFIAGFVNIRWARWSKLLIAVVSAIQAGLVFWMSQ  349 (511)
T ss_pred             HHHHHhhHHHHHHHHHHHHHHHcCCCccccCCHHHHHHHHHHHHHHHHHHhhcCCchhhHHHHHHHHHHHHHHHhhhhhc
Confidence            4444444433 33333333321111 11  112223334455567778888866664432333  333344444444444


Q ss_pred             cCCchHHHHHHHHHHHHHHHHHHHHHHHHhhccccCchhhhhhhHHHHHhhhhhhhHHHH
Q 039541          407 IGDEQEVLQIGLELASFFSACVAFNVLLVFGTELFTTCVRNSTTSLVRQAVNLGAAFSPV  466 (521)
Q Consensus       407 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~p~  466 (521)
                      ..+.  |..++..++++..+....++...-++.....+.-|...|+.+++..+-..+-..
T Consensus       350 t~~I--w~~Y~~yvlf~~~y~flitia~~~iA~~L~~~~~aLvFGiNtfvAl~LQtilT~  407 (511)
T TIGR00806       350 SHDI--WVLYVTYVLFRGIYQFLVPIATFQIASSLSKELCALVFGINTFVATALKTIITA  407 (511)
T ss_pred             ccch--HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccceEEEEecHHHHHHHHHHheEE
Confidence            3333  788888999999888888888888888877777799999888777554444333

Proteins of the RFC family are so-far restricted to animals. RFC proteins possess 12 putative transmembrane a-helical spanners (TMSs) and evidence for a 12 TMS topology has been published for the human RFC. The RFC transporters appear to transport reduced folate by an energy-dependent, pH-dependent, Na+-independent mechanism. Folate:H+ symport, folate:OH- antiport and folate:anion antiport mechanisms have been proposed, but the energetic mechanism is not well defined.

>COG0738 FucP Fucose permease [Carbohydrate transport and metabolism]

Probab=99.93  E-value=1.3e-23  Score=192.34  Aligned_cols=317  Identities=14%  Similarity=0.065  Sum_probs=245.3

Q ss_pred             CcceeeecceeeCCccccchhhHHHHHHHHHHhhhhhhhccccCCCCchHHHHHHHHHHHHHHHHHh---ccccHHHHHH
Q 039541          101 DTTIISDWSLECAGSSILSGLPSSCFFIGCLLGGLALSTLGDSSSLGRKKLLFLSCFAMSITALATI---FANNIWIYST  177 (521)
Q Consensus       101 ~~~i~~~~~~~~~~~~~~~~~~~s~~~lg~~i~~~~~g~l~dr~~~Grr~~l~~~~~~~~~~~~~~~---~~~~~~~l~~  177 (521)
                      +|++++.|+++..|.    +++..+++.|+.+.+++.|++.+|  +|+|+.++.|+.++++++.+..   -..++..+++
T Consensus        36 ip~l~~~f~ls~~~a----~liqfaff~gYf~~~lpa~~~~kk--~gyk~gi~lgL~l~avg~~lF~pAa~~~~y~~FL~  109 (422)
T COG0738          36 IPHLKEVFDLTYFEA----SLIQFAFFGGYFIMSLPAGLLIKK--LGYKAGIVLGLLLYAVGAALFWPAASSKSYGFFLV  109 (422)
T ss_pred             HHHHHHHhCccHHHH----HHHHHHHHHHHHHHhccHHHHHHH--hhhHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHH
Confidence            899999999999888    999999999999999999999999  9999999999999999999984   5678999999


Q ss_pred             HHHHhhccchhhHhhhhhheeeeecCcchhHHHHHHHHHHHHHHHHHHHH-HHhhc-------------------CCchh
Q 039541          178 IRFVAGFFRAPIMTSVIVLLSEMVSKRWRGQVVIIGFTFFSFGLVSLPAV-AYLSR-------------------GSSWK  237 (521)
Q Consensus       178 ~r~l~G~~~g~~~~~~~~~i~~~~~~~~rg~~~~~~~~~~~~G~~i~~~i-~~~~~-------------------~~~wr  237 (521)
                      +-|+.|.|.+...+.+..++..+.++++..+.+++.+.+.++|.+++|++ ++++.                   ...|+
T Consensus       110 ~lFila~Gi~~LetaaNp~v~~lg~~~~a~~rlnl~q~fn~lGa~~gp~~g~~lils~~~~~~~~~~~~~~~~~~~~~v~  189 (422)
T COG0738         110 ALFILASGIGLLETAANPYVTLLGKPESAAFRLNLAQAFNGLGAILGPLLGSSLILSGVALTMSAAQILAIKGADASSVQ  189 (422)
T ss_pred             HHHHHHhhhHHHHhccchHHHHhCCchhHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhhhhccCHHHHHHHHHHHHHhhh
Confidence            99999999999999999999999999999999999999999999999999 44433                   12488


Q ss_pred             HHHHHHHHHHHHHHhhhcee--eecchhHHHhcCCHHHHHHHHHHHhhhcCCCCCCCccccccCCCCCccccCCCccccc
Q 039541          238 MLYVWTSIPSIVCCIIIYPF--ISESPRWLFIHGHEAEAMAVLKRLASRSNYQSDYGLESCCLSNMPPKAKNVIPKLDLY  315 (521)
Q Consensus       238 ~~f~~~~~~~~~~~~~~~~~--~~esp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  315 (521)
                      ++|...+...+++. +....  .|+.+.     ..                                     .+.....+
T Consensus       190 ~pYl~~~~~lvll~-v~~~~~k~p~~~~-----~~-------------------------------------~~~~~~~~  226 (422)
T COG0738         190 FPYLILAGLLVLLA-VLILLSKLPDLQV-----AA-------------------------------------PSLGASGS  226 (422)
T ss_pred             hHHHHHHHHHHHHH-HHHHhccCCcCCc-----cc-------------------------------------cccccccc
Confidence            88888777766666 33222  222210     00                                     00000001


Q ss_pred             ccHHHHhccHHHHHHHHHHHHHHHHHHHHHHhHHhhccC-CCccH---HHHHHHHHHHhHhHHHHHHHHHhhcCCchHHH
Q 039541          316 SSLKDLFNRKWALRRLLTIMALAFGIGVVYFGLLLGVGN-LSFNI---YLSLAFNGLLDIPAYLLTFILIERWSRKSSIL  391 (521)
Q Consensus       316 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~---~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~  391 (521)
                      ....+++++|+++...+..+++-.........++.++.+ .+.+.   .........+.++|++++.++..|+...|.+.
T Consensus       227 ~~~~~l~~~~~~~~gvl~~FlYVG~Eva~gsfl~~y~~~~~g~~~~~aa~~~s~~~~~~~vGRFig~~lm~~~~~~k~La  306 (422)
T COG0738         227 AGLSSLFQNKHLRLGVLAIFLYVGAEVAIGSFLVSYLEELLGLNEQQAAYYLSFFWVGFMVGRFIGSALMSRIKPEKYLA  306 (422)
T ss_pred             chHHHHHhChHHHHHHHHHHHHHhHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHH
Confidence            156789999998777766665555444444444444444 44332   33344555778899999999999999999988


Q ss_pred             HHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHhhccccCchhhhhhhHHHHHhhhhhhhHHHHHHHhh
Q 039541          392 TFCILSGTCSAICVAIGDEQEVLQIGLELASFFSACVAFNVLLVFGTELFTTCVRNSTTSLVRQAVNLGAAFSPVLISAG  471 (521)
Q Consensus       392 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~p~~~~~~  471 (521)
                      ....+..+.++...+....   +.....++.|++.+..+|..++...+..| ++ ....|.......+|+++.|++.|+.
T Consensus       307 f~a~~~ill~~~~~l~~g~---v~~~~l~~ig~F~simfPTIfslal~~l~-~~-ts~~s~~l~maivGGAiiP~l~G~i  381 (422)
T COG0738         307 FYALIAILLLLAVALIGGV---VALYALFLIGLFNSIMFPTIFSLALKNLG-EH-TSVGSGLLVMAIVGGAIIPPLQGVI  381 (422)
T ss_pred             HHHHHHHHHHHHHHHhcCh---HHHHHHHHHHHHhHHHHHHHHHHHHhccC-cc-ccccceeeeeheecchHHHHHHHHH
Confidence            8887777777777776654   56677888899999999999999999999 44 3334444456788999999999974

>PF06609 TRI12: Fungal trichothecene efflux pump (TRI12); InterPro: IPR010573 This family consists of several fungal specific trichothecene efflux pump proteins

Probab=99.93  E-value=4.8e-23  Score=203.72  Aligned_cols=359  Identities=14%  Similarity=0.104  Sum_probs=224.8

Q ss_pred             CcceeeecceeeCCccccchhhHHHHHHHHHHhhhhhhhccccCCCCchHHHHHHHHHHHHHHHHHhccccHHHHHHHHH
Q 039541          101 DTTIISDWSLECAGSSILSGLPSSCFFIGCLLGGLALSTLGDSSSLGRKKLLFLSCFAMSITALATIFANNIWIYSTIRF  180 (521)
Q Consensus       101 ~~~i~~~~~~~~~~~~~~~~~~~s~~~lg~~i~~~~~g~l~dr~~~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~  180 (521)
                      ++.|.+|+|-++ +.    .|+.+.+.++.+++.++.|+++|.  ||||.+++.+.++..+|+++++.++|...++++..
T Consensus        67 l~~I~~diG~~~-~~----~w~~~~~~l~~av~~~~~G~LSDl--fGRr~~~i~g~~l~vvG~Iv~atA~~~~~~iag~~  139 (599)
T PF06609_consen   67 LPYINADIGGSD-NW----SWFSTAWTLASAVSFPFVGRLSDL--FGRRYFFIIGSLLGVVGSIVCATAQNMNTFIAGMV  139 (599)
T ss_pred             HHHHHHhcCCCc-cc----hHHHHHHHHHHHHHHHhhHHHHHH--hcchHHHHHHHHHHHhHHHHhhcCCcHHHHHHHHH
Confidence            678888998764 33    899999999999999999999999  99999999999999999999999999999999999


Q ss_pred             HhhccchhhHhhhhhheeeeecCcchhHHHHHHHHHHHHHHHHHHHHH-HhhcCCchhHHHHHHHHHHHHHHhhhceeee
Q 039541          181 VAGFFRAPIMTSVIVLLSEMVSKRWRGQVVIIGFTFFSFGLVSLPAVA-YLSRGSSWKMLYVWTSIPSIVCCIIIYPFIS  259 (521)
Q Consensus       181 l~G~~~g~~~~~~~~~i~~~~~~~~rg~~~~~~~~~~~~G~~i~~~i~-~~~~~~~wr~~f~~~~~~~~~~~~~~~~~~~  259 (521)
                      +.|+|.|.... ....++|..|.|.|+...++...........++.++ .+..+.+|||.|++.++...+.+++.+++..
T Consensus       140 l~GvgaG~~~~-~~~~isEl~p~k~R~~~~~~~~~~~i~~~~~~~~ia~~~~~~~~WRw~~~~~~i~~~i~~vl~~~fY~  218 (599)
T PF06609_consen  140 LYGVGAGVQEL-AALAISELVPNKWRGLGLAIASIPFIITTWISPLIAQLFAAHSGWRWIFYIFIIWSGIALVLIFFFYF  218 (599)
T ss_pred             HHHHhhHHHHH-HHHHHHHhcccchhhhHhHHHHHHHHhhhcccHHHHHHhccCCCcchHHHHHHHHHHHHHHHHHHHhC
Confidence            99999876654 455689999999999888777766656555677774 4455679999999998887776644443332


Q ss_pred             cchhHHHhcCC---HHHHHHHHHHHh-------------h-hcCCCCCCCccccccC-CCCC--------ccccCCCccc
Q 039541          260 ESPRWLFIHGH---EAEAMAVLKRLA-------------S-RSNYQSDYGLESCCLS-NMPP--------KAKNVIPKLD  313 (521)
Q Consensus       260 esp~~~~~~~~---~~~~~~~~~~~~-------------~-~~~~~~~~~~~~~~~~-~~~~--------~~~~~~~~~~  313 (521)
                      . |++...+++   ..+..+.++.+.             . .-.+..+++..+...- .+..        --=|.....+
T Consensus       219 P-P~~~~~~~~~~s~~~~l~~lD~IG~~L~~~Gl~LfLlgl~wgG~~~~~W~Sa~VIa~lviG~~~Lv~F~~wE~~~~~~  297 (599)
T PF06609_consen  219 P-PPRAQLHGRKLSKREQLKELDWIGIFLFIAGLALFLLGLSWGGYPYYPWKSAHVIAPLVIGFVLLVAFVVWEWFGAPK  297 (599)
T ss_pred             C-CchhhhccccCcHHHHHHHhhHHHHHHHHHHHHHHHHHHhccCCCCCCCCCccchhhHHHHHHHHHHHHHhhhhccCC
Confidence            2 222221211   111111111110             0 0011111111110000 0000        0000000000


Q ss_pred             ccccHHHHhccHH-HHHHHHHHHHHHHHH-HHHHHhHHhhccCCCcc------HHHHHHHHHHHhHhHHHHHHHHHhhcC
Q 039541          314 LYSSLKDLFNRKW-ALRRLLTIMALAFGI-GVVYFGLLLGVGNLSFN------IYLSLAFNGLLDIPAYLLTFILIERWS  385 (521)
Q Consensus       314 ~~~~~~~l~~~~~-~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~g~l~dr~g  385 (521)
                      .+.-..+++|+++ +...+++.++..... ...++........++.+      ........+++..+|.++.+.+..+++
T Consensus       298 ~Pl~P~~Lf~~~r~~~~~lvi~fi~G~~~~s~~~l~p~~~~~vf~~d~~~~~~~~~~s~~~~fg~~~g~~i~g~l~~~ir  377 (599)
T PF06609_consen  298 DPLFPHRLFKDRRGFAALLVISFISGMNFFSVNILWPQQVVNVFGSDPISITEIGWISSPVGFGSCAGAVILGLLFSKIR  377 (599)
T ss_pred             CCcCCHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCcccceeehhhhhHHHHHHHHHHHHHHHHHHcc
Confidence            1112345777743 222222222222111 11112222212122222      223344556677788888999999888


Q ss_pred             CchHH-HHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHhhccccCchhhhhhhHHHHHhhhhhhhHH
Q 039541          386 RKSSI-LTFCILSGTCSAICVAIGDEQEVLQIGLELASFFSACVAFNVLLVFGTELFTTCVRNSTTSLVRQAVNLGAAFS  464 (521)
Q Consensus       386 ~~~~~-~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~  464 (521)
                      |-|.. +++.+++.+++..+......+....+...++.+++.+.........+.-..|++..+++.|+...++.+|+.++
T Consensus       378 ~~Kw~li~~~~~~ta~~Gama~~~~~n~~~~i~~~~l~g~giG~~~~~~~~~~ql~~p~~~ig~a~gL~~s~R~~GGsIg  457 (599)
T PF06609_consen  378 HIKWQLIFGSVLMTAFCGAMAAVRPDNKNAAIAFLVLAGFGIGGILVPAIVIAQLIVPDEDIGTATGLTGSIRSIGGSIG  457 (599)
T ss_pred             chhHHHHHHHHHHHHHHHHHHHccCCCcchHHHHHHHHHHhHHHHHHHHHHeeEeeeCchHHHHHHHHHHHHHHHhhHHH
Confidence            76554 46666666655555554333333445677788888888888888888888999999999999999998888776


Q ss_pred             HHHH
Q 039541          465 PVLI  468 (521)
Q Consensus       465 p~~~  468 (521)
                      ..+.
T Consensus       458 ~aIy  461 (599)
T PF06609_consen  458 YAIY  461 (599)
T ss_pred             HHHH
Confidence            5543

Many of the genes involved in trichothecene toxin biosynthesis in Fusarium sporotrichioides are present within a gene cluster. It has been suggested that TRI12 may play a role in F. sporotrichioides self-protection against trichothecenes [].

>TIGR00924 yjdL_sub1_fam amino acid/peptide transporter (Peptide:H+ symporter), bacterial

Probab=99.92  E-value=4.3e-23  Score=206.06  Aligned_cols=372  Identities=9%  Similarity=-0.026  Sum_probs=234.0

Q ss_pred             cceeeCCccccchhhHHHHHHHHHHhhhhhhhccccCCC-CchHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHhhccc
Q 039541          108 WSLECAGSSILSGLPSSCFFIGCLLGGLALSTLGDSSSL-GRKKLLFLSCFAMSITALATIFANNIWIYSTIRFVAGFFR  186 (521)
Q Consensus       108 ~~~~~~~~~~~~~~~~s~~~lg~~i~~~~~g~l~dr~~~-Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~  186 (521)
                      +|++..+.    +++.+.+.++..++++++|+++||  + |||+++.++.++.+++.++.+++++++.++++|++.|+|.
T Consensus        43 lg~s~~~a----g~~~~~~~~~~~~~~~~~G~laDr--~~G~~~~l~~~~~~~~~g~~~~~~~~~~~~~~~~~~l~g~g~  116 (475)
T TIGR00924        43 LGFSQEQA----FIIFGAYSALVYLLTSVGWWFGDR--VWGTKKTMVLGGIVLMLGHFMLAMSIYPDLIFYGLGTIAVGS  116 (475)
T ss_pred             CCCCHHHH----HHHHHHHHHHHHHHHhhHHHHHHh--hcchHHHHHHHHHHHHHHHHHHHhcccHhHHHHHHHHHHhcc
Confidence            89998776    999999999999999999999998  6 9999999999999999999999999999999999999999


Q ss_pred             hhhHhhhhhheeeeecCcc---hhHHHHHHHHHHHHHHHHHHHH-HHhhcCCchhHHHHHHHHHHHHHHhhhceeee---
Q 039541          187 APIMTSVIVLLSEMVSKRW---RGQVVIIGFTFFSFGLVSLPAV-AYLSRGSSWKMLYVWTSIPSIVCCIIIYPFIS---  259 (521)
Q Consensus       187 g~~~~~~~~~i~~~~~~~~---rg~~~~~~~~~~~~G~~i~~~i-~~~~~~~~wr~~f~~~~~~~~~~~~~~~~~~~---  259 (521)
                      |...+...++++|++|+++   |+++++++..+.++|.++||.+ +++.++.|||+.|++.++..++.. +.+.+.+   
T Consensus       117 g~~~~~~~~~~a~~~~~~~~~~r~~~~~~~~~~~niG~~ig~~l~g~l~~~~g~~~~f~~~~~~~~~~~-l~~~~~~~~~  195 (475)
T TIGR00924       117 GLFKANPSSMVGKLYERGDMPRRDGGFTLFYMSINIGSFISPLLAGVIAENYGYHVGFNLAAVGMVIGL-LTFFAGRHML  195 (475)
T ss_pred             ccccCCHHHHHHHhcCCCCcccccceehhHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHH-HHHHHccccc
Confidence            9999999999999998754   8889999999999999999999 677777899999998876555443 3332222   


Q ss_pred             -cchhHHHhcCCHHHHHHHHHH------------HhhhcCCCCCCCcccc-ccC----CCCCccccCCCcccccccHHHH
Q 039541          260 -ESPRWLFIHGHEAEAMAVLKR------------LASRSNYQSDYGLESC-CLS----NMPPKAKNVIPKLDLYSSLKDL  321 (521)
Q Consensus       260 -esp~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~-~~~----~~~~~~~~~~~~~~~~~~~~~l  321 (521)
                       +.|+.. .+.+.++.+.....            ... ..... ...... ...    .........++.    .+..+-
T Consensus       196 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~  268 (475)
T TIGR00924       196 RDIGSVP-DPLSGQGKTYGKLLLALLAALALVFFCAW-LMHHV-VIANILLMTVTLAVIIFFFRLAFKPR----LDAVAR  268 (475)
T ss_pred             ccCCCCC-CCcchhhhhhHHHHHHHHHHHHHHHHHHH-HHhcc-HHHHHHHHHHHHHHHHHHHHHHHhcc----CCHHHH
Confidence             222100 00000110000000            000 00000 000000 000    000000000000    000010


Q ss_pred             hccHHHHHHHHHHHHHHHHHHHHHHhHHhhccC-C-----C--ccHHHHHHHHHHHhHhHHHHHHHHHhhcCC-----ch
Q 039541          322 FNRKWALRRLLTIMALAFGIGVVYFGLLLGVGN-L-----S--FNIYLSLAFNGLLDIPAYLLTFILIERWSR-----KS  388 (521)
Q Consensus       322 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-----~--~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~-----~~  388 (521)
                      .|...+...++...+++.........++.+.++ .     +  ........+..+.-++..++..++..|++|     +.
T Consensus       269 ~~~~~~l~l~~~~~~~~~~~~Q~~s~l~l~~~~~~~~~~~~~~ip~~~~~~~n~~~iil~~p~~~~~~~~l~~~~~~~~~  348 (475)
T TIGR00924       269 NKMYAYIVLFLEAVVFWVLYAQMPTSLNFFADNNMHHEMLGMSVPVIWFQSLNPFWVVVGSPVLAMIWTRLGRKGKDPTT  348 (475)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccccccceEECHHHHHhhhHHHHHHHHHHHHHHHHHHHhCCCCCCc
Confidence            111112222222333333333333333433222 1     1  123444455555555555554443333333     33


Q ss_pred             HH--HHHHHHHHHHHHHHHhc----C---CchHHHHHHHHHHHHHHHHHHHHHHHHhhccccCchhhhhhhHHHHHhhhh
Q 039541          389 SI--LTFCILSGTCSAICVAI----G---DEQEVLQIGLELASFFSACVAFNVLLVFGTELFTTCVRNSTTSLVRQAVNL  459 (521)
Q Consensus       389 ~~--~~~~~~~~i~~~~~~~~----~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~  459 (521)
                      ..  .+++++.++++..+.+.    .   ..+.++.....++.+++.....|....+..+..|++.||+.+|+......+
T Consensus       349 ~~k~~~G~~l~~~~~~~~~~~~~~~~~~~~~s~~~~i~~~~~~~~ge~~~~p~~~~~~~~~aP~~~~g~~~g~~~l~~~~  428 (475)
T TIGR00924       349 PLKFTLGMLFCGASFLTFAASIWFADAGGLTSPWFMVLIYLFQTLGELMISPLGLSWWTKIAPQRLMGQMLGMWFLAQAM  428 (475)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhcCCCCccCHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCCHHHHHHHHHHHHHHHHH
Confidence            33  67777777776666531    1   123377888899999999999999999999999999999999999999999


Q ss_pred             hhhHHHHHHHhh--ccchhHHHHHHHHHHHHHhHhh
Q 039541          460 GAAFSPVLISAG--RQNEFLSFGVFGLVVFCFGFFV  493 (521)
Q Consensus       460 g~~~~p~~~~~~--~~~~~~~~~~~~~~~~~~~~~~  493 (521)
                      |..+++.+....  ..++...|...++..++..++.
T Consensus       429 g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  464 (475)
T TIGR00924       429 GSLLGGYLATFGAVPQGVTGVFGKIGLVTLLVGVVM  464 (475)
T ss_pred             HHHHHHHHHHHHhcccchhhHHHHHHHHHHHHHHHH
Confidence            999998887652  2235555666666555555444

The model describes proton-dependent oligopeptide transporters in bacteria. This model is restricted in its range in recognizing bacterial proton-dependent oligopeptide transporters, although they are found in yeast, plants and animals. They function by proton symport in a 1:1 stoichiometry, which is variable in different species. All of them are predicted to contain 12 transmembrane domains, for which limited experimental evidence exists.

>PTZ00207 hypothetical protein; Provisional

Probab=99.92  E-value=6e-23  Score=204.53  Aligned_cols=380  Identities=12%  Similarity=0.013  Sum_probs=241.7

Q ss_pred             CcceeeecceeeCCccccchhhHHHHHHHHHHhhhhhhhccccCCCCchHHHHHHHHHHHHHHHHHhcc------ccHHH
Q 039541          101 DTTIISDWSLECAGSSILSGLPSSCFFIGCLLGGLALSTLGDSSSLGRKKLLFLSCFAMSITALATIFA------NNIWI  174 (521)
Q Consensus       101 ~~~i~~~~~~~~~~~~~~~~~~~s~~~lg~~i~~~~~g~l~dr~~~Grr~~l~~~~~~~~~~~~~~~~~------~~~~~  174 (521)
                      .|.+++++|++.++.    +++.++. ....+++++.|++.||  +|+|++++++.+++++++++++++      ++++.
T Consensus        50 s~~L~~~lgls~~~l----~~i~svg-~~~g~~~lp~G~L~Dr--~G~R~vllig~ll~~iG~ll~ala~~~~i~~s~~~  122 (591)
T PTZ00207         50 SGAMQARYNLTQRDL----STITTVG-IAVGYFLLPYSFIYDY--LGPRPIFVLSMTVFCLGTLLFALTFQEVIEGSVVR  122 (591)
T ss_pred             HHHHHHHhCcCHHHH----HHHHHHH-HHHHHHHHHHHHHHHH--hCcHHHHHHHHHHHHHHHHHHHHHhcccccCcHHH
Confidence            578999999999776    8887764 3445678889999999  999999999999999999999997      68999


Q ss_pred             HHHHHHHhhccchhhHhhhhhheeeeecCcchhHHHHHHHHHHHHHHHH-HHHHHHhhcCCchhHHHHHHHHHHHHHHhh
Q 039541          175 YSTIRFVAGFFRAPIMTSVIVLLSEMVSKRWRGQVVIIGFTFFSFGLVS-LPAVAYLSRGSSWKMLYVWTSIPSIVCCII  253 (521)
Q Consensus       175 l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~rg~~~~~~~~~~~~G~~i-~~~i~~~~~~~~wr~~f~~~~~~~~~~~~~  253 (521)
                      +.+.|++.|+|.+...+.....+.+|+| ++||++.|+...+.++|.++ +++...+.. .+|+..|++.+++.++..++
T Consensus       123 l~l~r~l~G~G~~~~~~~~~~~i~~~Fp-~~RG~a~Gi~~~~~gLGsaI~~~l~~~l~~-~~~~~~fl~l~vl~~vv~ll  200 (591)
T PTZ00207        123 LSVYNGLMTLGCMLFDLGAVVTVLSVFP-SNRGAVVAIMKTFTGLGSAILGSIQLAFFS-DNTSAYFFFLMSFALVVGIL  200 (591)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhCh-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999997 78999999999999999986 455544433 47999999888888887766


Q ss_pred             hceeeecch--hHHHhcCCHHHHHHHHHH---------------------------------------------------
Q 039541          254 IYPFISESP--RWLFIHGHEAEAMAVLKR---------------------------------------------------  280 (521)
Q Consensus       254 ~~~~~~esp--~~~~~~~~~~~~~~~~~~---------------------------------------------------  280 (521)
                      .+.++++.|  ++..++++.+++++..++                                                   
T Consensus       201 ~~~~vr~p~~~~~~~~~~~~~~~~~~~~~~~~~~y~~q~~p~~~f~~~~~i~~~l~~yl~~~~~~~~~~~~~~~~~~~~~  280 (591)
T PTZ00207        201 AIVFMRLPPFHLTGYQEKHLDEEEKAQRLMRKGVYLKQKAPMWRFVYGFVILIILIVFLPLQGALVAYLKLGSNFKVGFA  280 (591)
T ss_pred             HHhheeCCcchhhcccccCCCHHHHHHHhhhhhhhhhcCCCceehhhHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHH
Confidence            666665554  332222111111111000                                                   


Q ss_pred             ---H---------------hhhcCCCCCCC-cccccc-C---CCCCccc-----cCC-CcccccccHHHHhccHHHHHHH
Q 039541          281 ---L---------------ASRSNYQSDYG-LESCCL-S---NMPPKAK-----NVI-PKLDLYSSLKDLFNRKWALRRL  331 (521)
Q Consensus       281 ---~---------------~~~~~~~~~~~-~~~~~~-~---~~~~~~~-----~~~-~~~~~~~~~~~l~~~~~~~~~~  331 (521)
                         +               .+ .+..++++ .+..+. +   +...++.     +.+ ..++..+++++.+++..+|..+
T Consensus       281 ~v~~~lll~~p~l~ip~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~t~~q~l~~~d~Wll~  359 (591)
T PTZ00207        281 VTVIVLTVIFPFMAFPLTTFD-GKRPHDDSDGKAKEHVEAGEEVSAAEDKVVETDVDYIAPQFQETFIEGLKTARLWCLL  359 (591)
T ss_pred             HHHHHHHHHHHHHhhhHHHhc-cCCcCCCccccccccccccccccccccccccccccCCCCCCcchHHHHHhchhHHHHH
Confidence               0               00 00000000 000000 0   0000000     000 1122223788888888877655


Q ss_pred             HHHHHHHHHHHHHHHhHHhhccCC-Cc--cH--HH-HHHHHHHHhHhHHHHHHHHHhhcCCc--------h-HHHHHHHH
Q 039541          332 LTIMALAFGIGVVYFGLLLGVGNL-SF--NI--YL-SLAFNGLLDIPAYLLTFILIERWSRK--------S-SILTFCIL  396 (521)
Q Consensus       332 ~~~~~~~~~~~~~~~~~~~~~~~~-~~--~~--~~-~~~~~~~~~~~~~~~~g~l~dr~g~~--------~-~~~~~~~~  396 (521)
                      +..++.+.......+-+....+.+ |.  +.  .. ...+.++++.+|++.+|++.....+|        . .+.+..+ 
T Consensus       360 ~~~~cg~g~gl~~~~N~~qI~~sl~g~~~~~~~~~~~vsL~si~~~~GRl~~g~~~~~~~~~~~~~r~prt~~l~~~~~-  438 (591)
T PTZ00207        360 WSIFCCVGAHFVIIFNARFIYTALAGEAPDDALNTLLTVLNGVGSAVGRLCMSYFEIWSQKRRAEDRVPITIALFIPSV-  438 (591)
T ss_pred             HHHHHhhCchheeeecHHHHHHHhcCCCCCccceeeehhhhhHHHHhhHHHHHHHHHHHHhhccccccchhHHHHHHHH-
Confidence            544433332211111122222222 22  11  11 45677889999999998887222211        2 2333333 


Q ss_pred             HHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHhhccccCchhhhhhhHHHHHhhhhhhhHH-HHHHHh-h---
Q 039541          397 SGTCSAICVAIGDEQEVLQIGLELASFFSACVAFNVLLVFGTELFTTCVRNSTTSLVRQAVNLGAAFS-PVLISA-G---  471 (521)
Q Consensus       397 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~-p~~~~~-~---  471 (521)
                      +.++.+++.+..+.  ..+++..++.|++.|..+++....++|+|. ++-|+-+-+.....-+|+.+- -.+.|. .   
T Consensus       439 ~~~~~lll~~~~p~--~~L~~~~~lvg~~~G~~~~~~~~i~selFg-k~~g~~yN~~~~a~pigs~~~n~~l~G~~Yd~e  515 (591)
T PTZ00207        439 CIITMLTLFLTLPK--AALPLPYFIAAFANGFMAATIALVTRTIFA-KDPAKHYNFCFLGSVLSAIFLNRLLYGEWYTQQ  515 (591)
T ss_pred             HHHHHHHHHHHCCc--cHhHHHHHHHHHHhhHhHHHHHHHHHHHhc-cchHHHhhHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence            55555555554432  267888999999999999999999999999 665777766666666665543 333332 0   


Q ss_pred             -----------ccchhHHHHHHHHHHHHHhHhhh
Q 039541          472 -----------RQNEFLSFGVFGLVVFCFGFFVV  494 (521)
Q Consensus       472 -----------~~~~~~~~~~~~~~~~~~~~~~~  494 (521)
                                 ..-+..+|++++.+++++.+...
T Consensus       516 a~k~~~~~C~G~~C~~~~~~v~~~~~~~g~~~s~  549 (591)
T PTZ00207        516 ADKLGQDVCTERVCVVMPLAFLLGLSFLAFITST  549 (591)
T ss_pred             HhhCCCCeeCCceeeHhHHHHHHHHHHHHHHHHh
Confidence                       11256788888888888777643

>KOG2615 consensus Permease of the major facilitator superfamily [General function prediction only]

Probab=99.92  E-value=2.9e-23  Score=187.30  Aligned_cols=323  Identities=15%  Similarity=0.153  Sum_probs=210.6

Q ss_pred             ccchhhHHHHHHHHHHhhhhhhhccccCCCCchHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHhhccchhhHhhhhhh
Q 039541          117 ILSGLPSSCFFIGCLLGGLALSTLGDSSSLGRKKLLFLSCFAMSITALATIFANNIWIYSTIRFVAGFFRAPIMTSVIVL  196 (521)
Q Consensus       117 ~~~~~~~s~~~lg~~i~~~~~g~l~dr~~~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~  196 (521)
                      ...|.+.|.|.+++.++++.+|.++||  +|||++++++++..++...+.+++.|+..++++|++.|+..| ......++
T Consensus        68 ~yaGflGSsF~ilQ~~sS~~~G~~SD~--yGRkpvll~c~~~va~s~ll~~~S~~F~afv~aR~l~Gi~kg-nl~v~rAi  144 (451)
T KOG2615|consen   68 FYAGFLGSSFSILQFISSPLWGCLSDR--YGRKPVLLACLIGVALSYLLWALSRNFAAFVLARFLGGIFKG-NLSVIRAI  144 (451)
T ss_pred             hhhhhHhhHHHHHHHHhhhhhhhhhhh--hCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccC-chHHHHHH
Confidence            666999999999999999999999999  999999999999999999999999999777777999999998 67888899


Q ss_pred             eeeeecCcchhHHHHHHHHHHHHHHHHHHHHH-Hhhc-C-CchhHHH----HHHHHHHHHHHhhhceeeecchhHHHhcC
Q 039541          197 LSEMVSKRWRGQVVIIGFTFFSFGLVSLPAVA-YLSR-G-SSWKMLY----VWTSIPSIVCCIIIYPFISESPRWLFIHG  269 (521)
Q Consensus       197 i~~~~~~~~rg~~~~~~~~~~~~G~~i~~~i~-~~~~-~-~~wr~~f----~~~~~~~~~~~~~~~~~~~esp~~~~~~~  269 (521)
                      ++|..++|+|+++++.++..+++|.++||.+| ++.. . ..=+++|    ++..++.........+++|||-+..   +
T Consensus       145 isdV~sek~r~l~ms~v~~a~~lGfilGPmIGgyla~f~~~~g~~p~alP~~~v~i~a~~~v~~~~~~lpETL~~r---k  221 (451)
T KOG2615|consen  145 ISDVVSEKYRPLGMSLVGTAFGLGFILGPMIGGYLAQFSSISGSYPFALPCLLVFILAAGDVTFFPWFLPETLPLR---K  221 (451)
T ss_pred             HHhhcChhhccceeeeeehhhhcchhhcchhhhHHHhhHhhhccCchHHHHHHHHHHHHHHHHHHHHhCCccccch---h
Confidence            99999999999999999999999999999995 4443 0 1112222    2233333332335567889984311   1


Q ss_pred             CHHHHHHHHHHHhhhcCCCCCCCccccccCCCCCccccCCCcccccccHHHHhccHHHHHHHH-------HHHHHHHHHH
Q 039541          270 HEAEAMAVLKRLASRSNYQSDYGLESCCLSNMPPKAKNVIPKLDLYSSLKDLFNRKWALRRLL-------TIMALAFGIG  342 (521)
Q Consensus       270 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~-------~~~~~~~~~~  342 (521)
                      +.++... ..+.   .+.       +.+.  .+..          ...-...+||+.....+.       ..+.+.....
T Consensus       222 ~~~~~~~-~~~~---~~~-------~~~~--~~~~----------~~~~v~~lrn~p~~~~i~~~~i~~l~~~ly~~l~s  278 (451)
T KOG2615|consen  222 RNDEHST-LQEA---ADD-------RLAL--LKFA----------RIFKVAALRNPPLLDFISVLRIFGLHYFLYLELFS  278 (451)
T ss_pred             hcccccc-hhhh---hhh-------hhhh--cchh----------hhhhhhhhcCccccchHHHHHHHHHHHHHHHHHHH
Confidence            1111000 0000   000       0000  0000          001112333333222111       1111111111


Q ss_pred             HHHHhHHhh-ccCCCccHHHHHHHHHHHhHhHHHHHHHHHhhcCCch-----HHHHHHHHHHHHHHHHHhcCCchHHHHH
Q 039541          343 VVYFGLLLG-VGNLSFNIYLSLAFNGLLDIPAYLLTFILIERWSRKS-----SILTFCILSGTCSAICVAIGDEQEVLQI  416 (521)
Q Consensus       343 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~-----~~~~~~~~~~i~~~~~~~~~~~~~~~~~  416 (521)
                      ..-++.+.+ -+.+++++...+-+....++.+.++.+.+..+..|.+     .+.....++.-..+++......  ..+.
T Consensus       279 ~~~~t~~~l~~~rfg~ss~~~G~vl~~tGl~m~~~ql~~~~~l~~~~~~~~a~l~~~l~~~vP~~llls~~~~~--~~l~  356 (451)
T KOG2615|consen  279 GLENTVLFLTHGRFGYSSMQQGKVLSTTGLLMLVIQLALVPILPRYKGNIKAVLLFSLLLIVPAFLLLSLARTP--VVLY  356 (451)
T ss_pred             HHHhhHHHhhcCccCCChhhheeeeehhhHHHHHHHHhccccccccccchhhHHHHHHHHHHHHHHHHhccccc--hhhh
Confidence            112222222 2456777666665555556666666666666655444     3333333333333333333333  5677


Q ss_pred             HHHHHHHHHHHHHHHHHHHhhccccCchhhhhhhHHHHHhhhhhhhHHHHHHHh
Q 039541          417 GLELASFFSACVAFNVLLVFGTELFTTCVRNSTTSLVRQAVNLGAAFSPVLISA  470 (521)
Q Consensus       417 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~p~~~~~  470 (521)
                      ....+..+......+....++....|++.||+++|+....+.++.++||.+.|.
T Consensus       357 ~~s~l~sf~~A~~vt~Lt~Lv~~~~~~~qrG~~~Gi~~Sl~alaRaiGPlv~g~  410 (451)
T KOG2615|consen  357 LGSTLKSFSTASVVTCLTSLVHKYGPQSQRGTLNGIFRSLGALARAIGPLVSGV  410 (451)
T ss_pred             HHHHHHHHHHHHhhHHHHHHHHhcCCcccchHHHHHHHHHHHHHHHhhhhhhhe
Confidence            778888888888888899999999999999999999999999999999999975

>TIGR02718 sider_RhtX_FptX siderophore transporter, RhtX/FptX family

Probab=99.91  E-value=5.5e-22  Score=194.74  Aligned_cols=364  Identities=10%  Similarity=-0.042  Sum_probs=243.6

Q ss_pred             HHHHHHHHHHHHHHHhhhhccccCCcccccCCcccccCCccccccccCcceecCCCCcceeeecceeeCCccccchhh--
Q 039541           45 VILISLLLIFESQQTFISVYTDEEPTWHCINNTTTCSSSSDICTLSKSAWAWDRPSDTTIISDWSLECAGSSILSGLP--  122 (521)
Q Consensus        45 ~~~~~l~~~~~~~~~~~~~~~~~~p~~~c~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~--  122 (521)
                      +..+...++..+.......+.                                   +|.+.+|.|.+.++.    |++  
T Consensus         3 ~~~~~~ly~~~g~~~~~~~p~-----------------------------------lp~~l~~~g~~~~~i----Gl~~~   43 (390)
T TIGR02718         3 VITLGLLYLSQGIPIGLAMDA-----------------------------------LPTLLREDGAPLTAL----AFLPL   43 (390)
T ss_pred             HHHHHHHHHHHHhHHHHHHHH-----------------------------------HHHHHHHcCCCHHHH----HHHHH
Confidence            455666778888887777777                                   899999999999666    987  


Q ss_pred             HHHHHHHHHHhhhhh-hhccccCCCCchHHHHHHHHHH-HHHHHHHh---cccc-HHHHHHHHHHhhccchhhHhhhhhh
Q 039541          123 SSCFFIGCLLGGLAL-STLGDSSSLGRKKLLFLSCFAM-SITALATI---FANN-IWIYSTIRFVAGFFRAPIMTSVIVL  196 (521)
Q Consensus       123 ~s~~~lg~~i~~~~~-g~l~dr~~~Grr~~l~~~~~~~-~~~~~~~~---~~~~-~~~l~~~r~l~G~~~g~~~~~~~~~  196 (521)
                      .+...+...+.++++ ++..||  +||||..++...+. ++.....+   ...+ ...++..-++.++..+...+...++
T Consensus        44 ~~l~~~~~~l~~p~~~~~~~~~--~g~r~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~d~~~d~~  121 (390)
T TIGR02718        44 VGLPWVVKFLWAPLVDNWWSWR--LGRRRSWVLPMQCLVSACLASLALVGPDVAGAGWAVGLLACASLASATQDIATDGM  121 (390)
T ss_pred             HHHHHHHHHHHHHHHhcccccc--CCcchhHHHHHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            466678888888888 557999  99999976655332 22222222   2222 3344555566667777788888888


Q ss_pred             eeeeecCcchhHHHHHHHHHHHHHHHHHHHH-HHhhcCCchhHHHHHHHHHHHHHHhhhceeeecchhHHHhcCCHHHHH
Q 039541          197 LSEMVSKRWRGQVVIIGFTFFSFGLVSLPAV-AYLSRGSSWKMLYVWTSIPSIVCCIIIYPFISESPRWLFIHGHEAEAM  275 (521)
Q Consensus       197 i~~~~~~~~rg~~~~~~~~~~~~G~~i~~~i-~~~~~~~~wr~~f~~~~~~~~~~~~~~~~~~~esp~~~~~~~~~~~~~  275 (521)
                      ..|..++++++...+....+..+|.++|+.. +++.+..|||.+|++.+++.++..+..++..|++++    +.+.++  
T Consensus       122 ~~~~~~~~~~~~~~~~~~~g~~lG~~~g~~~~~~l~~~~gw~~~f~~~a~l~~~~~~~~~~~~~~~~~----~~~~~~--  195 (390)
T TIGR02718       122 AAEHFNGRTLAKGNAVQIAGVMIGFFGGGAGTLVLFGKFGQRPAFLLVACVPLASLVCVLWLKDRAVA----SPEAPL--  195 (390)
T ss_pred             HHHhCCHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHcCCCCcC----ccccch--
Confidence            8898888888988888888889999998877 677888899999999998887766444333333221    000000  


Q ss_pred             HHHHHHhhhcCCCCCCCccccccCCCCCccccCCCcccccccHHHHhccHHHHHHHHHHHHHHHHHHHHHHhHHhhccCC
Q 039541          276 AVLKRLASRSNYQSDYGLESCCLSNMPPKAKNVIPKLDLYSSLKDLFNRKWALRRLLTIMALAFGIGVVYFGLLLGVGNL  355 (521)
Q Consensus       276 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  355 (521)
                                                           +...++++++|+|..+......++........+...+.++.+.
T Consensus       196 -------------------------------------~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~  238 (390)
T TIGR02718       196 -------------------------------------ARRASLFRFFRRPLAWSLLALALLSAMTAVSGFGLSKLYLVDA  238 (390)
T ss_pred             -------------------------------------hhHHHHHHHHcCcCHHHHHHHHHHHHHHHHHHHHHhhHHHHhc
Confidence                                                 0012567788888766666555555554444444455566667


Q ss_pred             CccHHHHHHHHH----HHhHhHHHHHHHHHhhcCCchHHHHHHHHHHHHHHHHHhcC----CchHHHHHHHHHHHHHHHH
Q 039541          356 SFNIYLSLAFNG----LLDIPAYLLTFILIERWSRKSSILTFCILSGTCSAICVAIG----DEQEVLQIGLELASFFSAC  427 (521)
Q Consensus       356 ~~~~~~~~~~~~----~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~i~~~~~~~~~----~~~~~~~~~~~~~~~~~~~  427 (521)
                      |.+....+....    +..+++.++.|++.||+|+|+.+..+..+.++..+......    ............+.++..+
T Consensus       239 G~s~~~ig~~~~~~~~~~~~~g~~~~g~l~~r~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g  318 (390)
T TIGR02718       239 GWPLEWIGRLGMAGGAVTVLLGCGGGAWLVRRAGLWRTFILGVGLAGSLALLWFAQAAFWLAPGIAVAWSCSAFGSLITG  318 (390)
T ss_pred             CCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHcccCCcHHHHHHHHHHHHHHHH
Confidence            777665554432    34556788999999999999988877766533332222111    1111222333344455667


Q ss_pred             HHHHHHHHhhccccCc-hhhhhhhHHHHHhhhhhhhHHHHHHHhh--ccchhHHHHHHHHHHHHHhHh
Q 039541          428 VAFNVLLVFGTELFTT-CVRNSTTSLVRQAVNLGAAFSPVLISAG--RQNEFLSFGVFGLVVFCFGFF  492 (521)
Q Consensus       428 ~~~~~~~~~~~~~~~~-~~r~~~~~~~~~~~~~g~~~~p~~~~~~--~~~~~~~~~~~~~~~~~~~~~  492 (521)
                      ..++.......+..++ +.+++.+++.+...++|..++|.+.|..  ..++...|...+++.+++.+.
T Consensus       319 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~lg~~~g~~~~G~l~~~~G~~~~f~~~~~~~l~a~~~  386 (390)
T TIGR02718       319 ITSVAIYTAFMRFAGDGDQAGTDVTAVQSTRDLGELIASSIAGYLTDRFGYAGGFLSGTVLAVLAILL  386 (390)
T ss_pred             HHHHHHHHHHHHHhCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHH
Confidence            7777777776666665 8889999999999999999999999863  235666776666666655443

RhtX from Sinorhizobium meliloti 2011 and FptX from Pseudomonas aeruginosa appear to be single polypeptide transporters, from the major facilitator family (see pfam07690) for import of siderophores as a means to import iron. This function was suggested by proximity to siderophore biosynthesis genes and then confirmed by study of knockout and heterologous expression phenotypes.

>TIGR00805 oat sodium-independent organic anion transporter

Probab=99.91  E-value=2.4e-23  Score=213.56  Aligned_cols=278  Identities=15%  Similarity=0.129  Sum_probs=197.2

Q ss_pred             CcceeeecceeeCCccccchhhHHHHHHHHHHhhhhhhhccccCCCCchHHHHHHHHHHHHHHHHHhccc----------
Q 039541          101 DTTIISDWSLECAGSSILSGLPSSCFFIGCLLGGLALSTLGDSSSLGRKKLLFLSCFAMSITALATIFAN----------  170 (521)
Q Consensus       101 ~~~i~~~~~~~~~~~~~~~~~~~s~~~lg~~i~~~~~g~l~dr~~~Grr~~l~~~~~~~~~~~~~~~~~~----------  170 (521)
                      ++.++++|+++..+.    |++.+.+.++++++.++.|+++||  +|||+++.+++++++++++++++.+          
T Consensus        56 l~~iek~F~lss~~~----G~i~s~~~i~~~~~~i~v~~~~~r--~~r~~~i~~g~ll~~lg~ll~alphf~~~~y~~~~  129 (633)
T TIGR00805        56 LTTIERRFKLSTSSS----GLINGSYEIGNLLLIIFVSYFGTK--LHRPIVIGIGCAIMGLGSFLLSLPHFLSGRYSYST  129 (633)
T ss_pred             chhhhhhhCCCCCcc----eeeeehhhHHHHHHHHHHHHhhcc--cCcceEEEecHHHHHHHHHHHhChHHhcCCccccc
Confidence            899999999999777    999999999999999999999999  9999999999999999999988763          


Q ss_pred             -----------------------------------------cHHHHHHHHHHhhccchhhHhhhhhheeeeecCcchhHH
Q 039541          171 -----------------------------------------NIWIYSTIRFVAGFFRAPIMTSVIVLLSEMVSKRWRGQV  209 (521)
Q Consensus       171 -----------------------------------------~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~rg~~  209 (521)
                                                               .+..++++|+++|+|.+..++...+++.|++|+++|+++
T Consensus       130 ~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~GiG~~~~~~~~~~~i~d~~~~~~~~~~  209 (633)
T TIGR00805       130 TVSSTGNLSSANSFLCMENLTQALRPTQCPSECQKQHKESLMWLLFLVSQLLRGIGATPIFPLGISYIDDFAKSKNSPLY  209 (633)
T ss_pred             cccccccccccccccccCCCCCCccccccccccccccCCCceehhhHHHHHHHhccCCcchhcCchhhhccCCccccHHH
Confidence                                                     256788999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHH-HHhhcCC----------------------chhHHHHHHHHHHHHHHhhhceeeecc-hhHH
Q 039541          210 VIIGFTFFSFGLVSLPAV-AYLSRGS----------------------SWKMLYVWTSIPSIVCCIIIYPFISES-PRWL  265 (521)
Q Consensus       210 ~~~~~~~~~~G~~i~~~i-~~~~~~~----------------------~wr~~f~~~~~~~~~~~~~~~~~~~es-p~~~  265 (521)
                      ++++..+..+|.++|+++ +.+.+.+                      +||..|++.+++.++..+. ++++|++ |+..
T Consensus       210 ~~i~~~~~~iG~~lG~llgg~l~~~~~d~~~~~~~~~~l~~~dprWiGaWwl~Fli~g~l~~l~~v~-l~~~p~~lp~~~  288 (633)
T TIGR00805       210 IGILESIAVFGPAFGYLLGSFCLQIYVDTGSVNTEDVILTPTDPRWIGAWWIGFLICGGVALLTSIP-FFFFPKALPKEG  288 (633)
T ss_pred             HHHHHHHHHhhhHHHHHHHHHHHhcccccccCCCCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHH-HHhCccccCCcc
Confidence            999999999999999998 4444321                      2778899888888887733 4455553 2110


Q ss_pred             HhcCCHHHHHHHHHHHhhhcCCCCCCCccccccCCCCCccccCCCcccccccHHHHhccHHHHHHHHHHHHHHHHHHHHH
Q 039541          266 FIHGHEAEAMAVLKRLASRSNYQSDYGLESCCLSNMPPKAKNVIPKLDLYSSLKDLFNRKWALRRLLTIMALAFGIGVVY  345 (521)
Q Consensus       266 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~  345 (521)
                       .+.+.+..++   +  . .+..           +.+...+......+....++.++++|.++...+..++.........
T Consensus       289 -~~~~~~~~~~---~--~-~~~~-----------~~~~~~~~~~~~~~~~~~~~~Ll~n~~f~~~~l~~~~~~~~~~~~~  350 (633)
T TIGR00805       289 -KRVNVDVHET---E--K-LEKS-----------EDKSRKKNSDITKDFPKIIKRLLCNPIYMLVILAQVIDSLAFNGYI  350 (633)
T ss_pred             -cccchhhhhh---h--c-cccc-----------ccccchhhhhhHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHH
Confidence             0000000000   0  0 0000           0000000000111122357789999988877777766666665555


Q ss_pred             HhHHhhcc-CCCccHHHHHHHHH---H-HhHhHHHHHHHHHhhcCC--chHHHHHHHHHHHHHHH
Q 039541          346 FGLLLGVG-NLSFNIYLSLAFNG---L-LDIPAYLLTFILIERWSR--KSSILTFCILSGTCSAI  403 (521)
Q Consensus       346 ~~~~~~~~-~~~~~~~~~~~~~~---~-~~~~~~~~~g~l~dr~g~--~~~~~~~~~~~~i~~~~  403 (521)
                      ..+|.+++ .++.++.....+.+   + +.++|.+++|+++||++.  |+.+.++.++..++.+.
T Consensus       351 ~~lP~yl~~~~g~s~~~ag~l~~~~~i~~~~vG~~l~G~l~~r~~~~~~~~~~~~~~~~~~~~~~  415 (633)
T TIGR00805       351 TFLPKYLENQYGISSAEANFLIGVVNLPAAGLGYLIGGFIMKKFKLNVKKAAYFAICLSTLSYLL  415 (633)
T ss_pred             HHHHHHHHHHcCCcHHHHHHHhhhhhhhHHHHHHhhhhheeeeecccHHHHHHHHHHHHHHHHHH
Confidence            55666555 46766655544332   2 456788999999999984  45666666655555433

Proteins of the OAT family catalyze the Na+-independent facilitated transport of organic anions such as bromosulfobromophthalein and prostaglandins as well as conjugated and unconjugated bile acids (taurocholate and cholate, respectively). These transporters have been characterized in mammals, but homologues are present in C. elegans and A. thaliana. Some of the mammalian proteins exhibit a high degree of tissue specificity. For example, the rat OAT is found at high levels in liver and kidney and at lower levels in other tissues. These proteins possess 10-12 putative a-helical transmembrane spanners. They may catalyze electrogenic anion uniport or anion exchange.

>PRK09584 tppB putative tripeptide transporter permease; Reviewed

Probab=99.90  E-value=5e-22  Score=199.54  Aligned_cols=373  Identities=11%  Similarity=-0.008  Sum_probs=223.9

Q ss_pred             CcceeeecceeeCCccccchhhHHHHHHHHHHhhhhhhhccccCCC-CchHHHHHHHHHHHHHHHHHhccc-cHHHHHHH
Q 039541          101 DTTIISDWSLECAGSSILSGLPSSCFFIGCLLGGLALSTLGDSSSL-GRKKLLFLSCFAMSITALATIFAN-NIWIYSTI  178 (521)
Q Consensus       101 ~~~i~~~~~~~~~~~~~~~~~~~s~~~lg~~i~~~~~g~l~dr~~~-Grr~~l~~~~~~~~~~~~~~~~~~-~~~~l~~~  178 (521)
                      ...+.+++|++.++.    +++.+.+........+++|+++||  + |||++++++.++.+++.+++++++ +.+.++++
T Consensus        45 ~~yl~~~lg~s~~~a----~~~~~~~~~~~~~~~~~~G~LaDr--~~G~r~~~~~g~~~~~ig~~l~~~~~~~~~~l~~~  118 (500)
T PRK09584         45 AVYLVKQLGMSEADS----ITLFSSFSALVYGLVAIGGWLGDK--VLGTKRVIMLGAIVLAIGYALVAWSGHDAGIVYMG  118 (500)
T ss_pred             HHHHHHHcCCCHHHH----HHHHHHHHHHHHHHHHHHHHHHHh--ccchHHHHHHHHHHHHHHHHHHHHhcccHHHHHHH
Confidence            345568899988666    788877776666667899999999  9 999999999999999999998874 56777889


Q ss_pred             HHHhhccchhhHhhhhhheeeeecCcc--hhHHHHHHHHHHHHHHHHHHHH-HHhhcCCchhHHHHHHHHHHHHHHh---
Q 039541          179 RFVAGFFRAPIMTSVIVLLSEMVSKRW--RGQVVIIGFTFFSFGLVSLPAV-AYLSRGSSWKMLYVWTSIPSIVCCI---  252 (521)
Q Consensus       179 r~l~G~~~g~~~~~~~~~i~~~~~~~~--rg~~~~~~~~~~~~G~~i~~~i-~~~~~~~~wr~~f~~~~~~~~~~~~---  252 (521)
                      |+++|++.|...+...+++.|++|+++  |+.++++++.+.++|.+++|.+ +++.++.|||+.|++.++..++..+   
T Consensus       119 ~~l~gig~g~~~~~~~~l~~~~f~~~~~~~~~~~~~~~~~~~iG~~~gp~i~g~l~~~~g~~~~F~i~~i~~~i~~i~~~  198 (500)
T PRK09584        119 MATIAVGNGLFKANPSSLLSTCYEKDDPRLDGAFTMYYMSINIGSFFSMLATPWLAAKYGWSVAFALSVVGMLITVVNFA  198 (500)
T ss_pred             HHHHHHhhhcccCCHHHHHHHhcCCCchhhhhcchHHHHHHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999998654  4568889999999999999998 7777888999999998765444331   


Q ss_pred             hhceeeecchhHHHhcCCHHHHHHHH-----------HHHhhhcCCCCCCCcccccc---CCCCCccccCCCcccccccH
Q 039541          253 IIYPFISESPRWLFIHGHEAEAMAVL-----------KRLASRSNYQSDYGLESCCL---SNMPPKAKNVIPKLDLYSSL  318 (521)
Q Consensus       253 ~~~~~~~esp~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~  318 (521)
                      .....++|.++.. .+.+.+......           ..... .+.+  ........   ..........       ...
T Consensus       199 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~--~~~~~~~~~~~~~~~~~~~~~-------~~~  267 (500)
T PRK09584        199 FCQRWVKQYGSKP-DFEPINYRKLLLTIVGVVALIAIATWLL-HNQE--IARMALGVVALGIVVIFGKEA-------FAM  267 (500)
T ss_pred             HhHHHhccCCCCC-CccccchhhHHHHHHHHHHHHHHHHHHH-hcch--HHHHHHHHHHHHHHHHHHHHH-------hhc
Confidence            2222333321100 000001000000           00000 0000  00000000   0000000000       000


Q ss_pred             HHHhccHHHHHHHHHHHHHHHHHHHHHHhHHhhc-----c--C---CCc--cHHHHHHHHHHHhHhHHHHH----HHHHh
Q 039541          319 KDLFNRKWALRRLLTIMALAFGIGVVYFGLLLGV-----G--N---LSF--NIYLSLAFNGLLDIPAYLLT----FILIE  382 (521)
Q Consensus       319 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~--~---~~~--~~~~~~~~~~~~~~~~~~~~----g~l~d  382 (521)
                      .+.-++|. ...+ ..++........+...+..+     +  +   .|.  .......+..+..++..++.    +++.+
T Consensus       268 ~~~~~~~~-~~~~-~~~~~~i~f~~~~~q~~~~l~~~~~~~~~~~~~g~~i~~~~~~s~n~i~iil~~p~~~~~~~~l~~  345 (500)
T PRK09584        268 KGAARRKM-IVAF-ILMLEAIIFFVLYSQMPTSLNFFAIRNVEHSILGIAVEPEQYQALNPFWIMIGSPILAAIYNKMGD  345 (500)
T ss_pred             CHHHHHHH-HHHH-HHHHHHHHHHHHHHHhccHHHHHHHHhccccccceEECHHHHHHHhHHHHHHHHHHHHHHHHHhCc
Confidence            00111111 1111 11111111112222222211     1  1   121  23344445555555555555    44444


Q ss_pred             hcCCchHHHHHHHHHHHHHHHHHhcCCc-------hHHHHHHHHHHHHHHHHHHHHHHHHhhccccCchhhhhhhHHHHH
Q 039541          383 RWSRKSSILTFCILSGTCSAICVAIGDE-------QEVLQIGLELASFFSACVAFNVLLVFGTELFTTCVRNSTTSLVRQ  455 (521)
Q Consensus       383 r~g~~~~~~~~~~~~~i~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~  455 (521)
                      |.+..+.+.+++++.+++++.+......       +.++.....++.+++.....|....++.+..|++.||.++|+...
T Consensus       346 r~~~~~~~~~G~~l~~l~f~~l~~~~~~~~~~~~vs~~~~~~~~~l~~~ge~~~~p~g~s~~~~~aP~~~rg~~~g~~~l  425 (500)
T PRK09584        346 RLPMPHKFAIGMVLCSGAFLVLPLGAKFANDAGIVSVNWLIASYGLQSIGELMISGLGLAMVAQLVPQRLMGFIMGSWFL  425 (500)
T ss_pred             CCCcHHHHHHHHHHHHHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCcHHHHHHHHHHHHH
Confidence            5555577888888888888776554321       125677888999999999999999999999999999999998877


Q ss_pred             hhhhhhhHHHHHHHhh------------ccchhHHHHHHHHHHHHHhHh
Q 039541          456 AVNLGAAFSPVLISAG------------RQNEFLSFGVFGLVVFCFGFF  492 (521)
Q Consensus       456 ~~~~g~~~~p~~~~~~------------~~~~~~~~~~~~~~~~~~~~~  492 (521)
                      ...+|..++..+.+..            ..++...|...++.+++..++
T Consensus       426 ~~a~g~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~a~~  474 (500)
T PRK09584        426 TTAGAALIAGYVANLMAVPDNVTDPLMSLEVYGRVFLQIGIATAVIAVL  474 (500)
T ss_pred             HHHHHHHHHHHHHHHhccccccccchhhhhhHHHHHHHHHHHHHHHHHH
Confidence            7767776665555321            112456677777665544433

>TIGR01301 GPH_sucrose GPH family sucrose/H+ symporter

Probab=99.90  E-value=1.3e-20  Score=184.32  Aligned_cols=367  Identities=12%  Similarity=0.075  Sum_probs=242.9

Q ss_pred             cceeeecceeeCCccccchhhHHHHHHHHHHhhhhhhhccccC--CCCchHHHHHH-HHHHHHHHHHHhccccHH-----
Q 039541          102 TTIISDWSLECAGSSILSGLPSSCFFIGCLLGGLALSTLGDSS--SLGRKKLLFLS-CFAMSITALATIFANNIW-----  173 (521)
Q Consensus       102 ~~i~~~~~~~~~~~~~~~~~~~s~~~lg~~i~~~~~g~l~dr~--~~Grr~~l~~~-~~~~~~~~~~~~~~~~~~-----  173 (521)
                      +.+.+++|.+....    +++..+..+...+.+|+.|+++||+  |+||||.++++ .+...++.++.+++++++     
T Consensus        28 ~~yl~~lg~~~~~~----~~i~~~~~l~~~i~~Pi~G~lSDr~~sr~GRRrp~il~g~~~~~~~l~ll~~~~~~~~~~~~  103 (477)
T TIGR01301        28 TPYVQELGIPHAWA----SIIWLCGPLSGLLVQPLVGYLSDRCTSRFGRRRPFIAAGAALVAFAVILIGFAADIGHLFGD  103 (477)
T ss_pred             HHHHHHcCCCHHHH----HHHHHHHHHHHHHHHhHeeehhcCCCCCCCChHHHHHHHHHHHHHHHHHHHhCchhhhhccc
Confidence            44567889988555    9999999999999999999999942  49999998774 666667777777876653     


Q ss_pred             ------------HHHHHHHHhhccchhhHhhhhhheeeeecCcch--hHHHHHHHHHHHHHHHHHHHHHHhh---cC---
Q 039541          174 ------------IYSTIRFVAGFFRAPIMTSVIVLLSEMVSKRWR--GQVVIIGFTFFSFGLVSLPAVAYLS---RG---  233 (521)
Q Consensus       174 ------------~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r--g~~~~~~~~~~~~G~~i~~~i~~~~---~~---  233 (521)
                                  .++++-.+..++.....+...++++|.+|+++|  +.+.++.+...++|.++|+.+|.+.   ..   
T Consensus       104 ~~~~~~~~~~i~~~~i~~~lld~~~n~~~~p~rALiaDl~p~~~~~~~~a~~~~~~~~~lG~ilg~~~g~~~~~~~~~~~  183 (477)
T TIGR01301       104 NLDKKTKPRAIIVFVVGFWILDVANNMLQGPCRAFLADLTGGDARRTRIANAYFSFFMAIGNVLGYAAGAYSGLYKIFPF  183 (477)
T ss_pred             cccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhccc
Confidence                        223333344557777888889999999998865  6899999999999999999986543   11   


Q ss_pred             ----------CchhHHHHHHHHHHHHHHhhhceeeecchhHHHhcCCHHHHHHHHHHHhhhcCCCCCCCccccccCCCCC
Q 039541          234 ----------SSWKMLYVWTSIPSIVCCIIIYPFISESPRWLFIHGHEAEAMAVLKRLASRSNYQSDYGLESCCLSNMPP  303 (521)
Q Consensus       234 ----------~~wr~~f~~~~~~~~~~~~~~~~~~~esp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  303 (521)
                                .+.|..|++.++..++..++..+..+|.|...  .++.++  +   +    .                +.
T Consensus       184 ~~~~~~~~~~~~~~~~F~i~a~~l~i~~l~t~~~v~E~~~~~--~~~~~~--~---~----~----------------~~  236 (477)
T TIGR01301       184 TKTEACGVSCANLKSCFLIDIILLAILTYIALSAVKENPLIG--SDDFIN--S---E----A----------------AP  236 (477)
T ss_pred             ccccccccccchHHHHHHHHHHHHHHHHHHHeeeeeccCCCc--cccchh--h---h----c----------------cc
Confidence                      16788999999988888878888899975310  000000  0   0    0                00


Q ss_pred             ccccCCCcccccccHHHHhcc-HHHHHHHHHHHHHHHHHHHHH-HhHHhhccC-CC--------ccH-----HHHHHHHH
Q 039541          304 KAKNVIPKLDLYSSLKDLFNR-KWALRRLLTIMALAFGIGVVY-FGLLLGVGN-LS--------FNI-----YLSLAFNG  367 (521)
Q Consensus       304 ~~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~-~~--------~~~-----~~~~~~~~  367 (521)
                      .++. ......++-++.+.+- +..++..++.++.|++..... |..++.-++ ++        ++.     .......+
T Consensus       237 ~~~~-~~~~~~~~i~~~~~~mP~~m~~l~~vqffsW~a~f~~~~y~T~~vg~~v~~~~~~~~~~y~~gvr~G~~~l~~~s  315 (477)
T TIGR01301       237 PSKH-GEEAFFGELFGAFKYLPRPVWILLLVTCLNWIAWFPFILFDTDWMGREVYGGSVNQGAKYDDGVRAGAFGLMLNS  315 (477)
T ss_pred             cccc-chhhhHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHcCCCCcchhHHHHHHHHHHHHHHHHH
Confidence            0000 0000001122223332 445556666777777664433 333332211 11        011     12234445


Q ss_pred             HHhHhHHHHHHHHHhhcCC-chHHHHHHHHHHHHHHHHHhcCCc------------------h-HHHHHHHHHHHHHHHH
Q 039541          368 LLDIPAYLLTFILIERWSR-KSSILTFCILSGTCSAICVAIGDE------------------Q-EVLQIGLELASFFSAC  427 (521)
Q Consensus       368 ~~~~~~~~~~g~l~dr~g~-~~~~~~~~~~~~i~~~~~~~~~~~------------------~-~~~~~~~~~~~~~~~~  427 (521)
                      +...+.+++..++.+|+|+ |++..++.++.++++....+....                  . .+..++.+.+.|+...
T Consensus       316 ~~~~i~s~~l~~l~~~~g~~k~~~~~s~~~~~~~l~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Gi~~A  395 (477)
T TIGR01301       316 VVLGITSIGMEKLCRGWGAGKRLWGIVNIILAICLAATVLVTYVAKNSRYYDGDGESLPPPTGIKASALIVFAILGIPLA  395 (477)
T ss_pred             HHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHhhhhccccccccccccCcchhhHHHHHHHHHHhhHHHH
Confidence            5556777788899999985 677688877777777766644320                  0 1456677888899999


Q ss_pred             HHHHHHHHhhccccCc--hhhhhhhHHHHHhhhhhhhHHHHHHHh----hccchhHHHHHHHHHHHHHhHhh-hccccCC
Q 039541          428 VAFNVLLVFGTELFTT--CVRNSTTSLVRQAVNLGAAFSPVLISA----GRQNEFLSFGVFGLVVFCFGFFV-VFLPETI  500 (521)
Q Consensus       428 ~~~~~~~~~~~~~~~~--~~r~~~~~~~~~~~~~g~~~~p~~~~~----~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~  500 (521)
                      ..+.+.++++++..++  +..|..+|+.|.+..+...+..+..|.    ...+....+.+.++.++++++.. +.+|+.+
T Consensus       396 ~~~siPfal~s~~~~~~~~~~G~~mgilN~~I~lpQii~sl~~g~~~~~~g~~~~~~~~~~gv~~~~aa~~~~~~~~~~~  475 (477)
T TIGR01301       396 ITYSIPFALASIRSSNLGAGQGLSMGVLNLAIVIPQIIVSLGSGPWDQLFGGGNLPAFVVGAVAAFVSGLLALILLPRPR  475 (477)
T ss_pred             HHHHHhHHHHHHHccccCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHcCCCCeeHHHHHHHHHHHHHHHHHHhCCCCC
Confidence            9999999999999995  445999999999988877766655543    22345566777777777777664 5566654

This model represents sucrose/proton symporters, found in plants, from the Glycoside-Pentoside-Hexuronide (GPH)/cation symporter family. These proteins are predicted to have 12 transmembrane domains. Members may export sucrose (e.g. SUT1, SUT4) from green parts to the phloem for long-distance transport or import sucrose (e.g SUT2) to sucrose sinks such as the tap root of the carrot.

>COG2807 CynX Cyanate permease [Inorganic ion transport and metabolism]

Probab=99.90  E-value=2.2e-21  Score=174.94  Aligned_cols=336  Identities=16%  Similarity=0.109  Sum_probs=260.9

Q ss_pred             CcceeeecceeeCCccccchhhHHHHHHHHHHhhhhhhhccccCCCCchHHHHHHHHHHHHHHHHHhccccHHHHHHHHH
Q 039541          101 DTTIISDWSLECAGSSILSGLPSSCFFIGCLLGGLALSTLGDSSSLGRKKLLFLSCFAMSITALATIFANNIWIYSTIRF  180 (521)
Q Consensus       101 ~~~i~~~~~~~~~~~~~~~~~~~s~~~lg~~i~~~~~g~l~dr~~~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~  180 (521)
                      +++|++|+|++.+..    |++++...+...+.+++..+++.|  +|.++.+..++++.++|.++-... +.+.++.+-.
T Consensus        35 L~~Ir~~~gls~s~a----GlLTtLPll~fg~~ap~a~~Lar~--~g~er~l~~~Llli~~G~~iR~~~-~~~~L~~gt~  107 (395)
T COG2807          35 LDEIRQDLGLSFSVA----GLLTTLPLLAFGLFAPAAPRLARR--FGEERSLFLALLLIAAGILIRSLG-GLPLLFLGTL  107 (395)
T ss_pred             HHHHHHHhcccHHHH----HHHHHHHHHHHHHHHhhhHHHHHH--HhhHHHHHHHHHHHHHHHHHHhcc-cHHHHHHHHH
Confidence            899999999999777    999999999999999999999999  999999999999999999999887 8889999999


Q ss_pred             HhhccchhhHhhhhhheeeeecCcchhHHHHHHHHHHHHHHHHHHHHH-HhhcCC-chhHHHHHHHHHHHHHHhhhceee
Q 039541          181 VAGFFRAPIMTSVIVLLSEMVSKRWRGQVVIIGFTFFSFGLVSLPAVA-YLSRGS-SWKMLYVWTSIPSIVCCIIIYPFI  258 (521)
Q Consensus       181 l~G~~~g~~~~~~~~~i~~~~~~~~rg~~~~~~~~~~~~G~~i~~~i~-~~~~~~-~wr~~f~~~~~~~~~~~~~~~~~~  258 (521)
                      +.|.|.+...+..+..+.+.+| |+-+..++++.+..++|..+++.+. .+.++. +||....+.+.++++.+ +.|+  
T Consensus       108 l~G~gIav~nVLLPslIK~~Fp-k~~~~mtglYs~sl~~~aaLaa~lavpla~~~~gW~~aL~~WAl~allAl-~~Wl--  183 (395)
T COG2807         108 LAGAGIAVINVLLPSLIKRDFP-KRVGLMTGLYSTSLGAGAALAAALAVPLAQHSGGWRGALGFWALLALLAL-LIWL--  183 (395)
T ss_pred             HHHhhHHHHHHhhhHHHHhhcc-cchhhHHhHHHHHHHHHHHHHhhhhhHHHHhhccHHHHHHHHHHHHHHHH-HHHh--
Confidence            9999999999999999999998 6789999999999999999988774 344443 79999999999999887 5543  


Q ss_pred             ecchhHHHhcCCHHHHHHHHHHHhhhcCCCCCCCccccccCCCCCccccCCCcccccccHHHHhccHHHHHHHHHHHHHH
Q 039541          259 SESPRWLFIHGHEAEAMAVLKRLASRSNYQSDYGLESCCLSNMPPKAKNVIPKLDLYSSLKDLFNRKWALRRLLTIMALA  338 (521)
Q Consensus       259 ~esp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~  338 (521)
                      |...|     .+..          + ....                          ..+-..++|+|.-|...+...+..
T Consensus       184 Pq~~r-----~~~~----------~-~~~~--------------------------~~~~~~vw~~~~aW~vtLfmGlqS  221 (395)
T COG2807         184 PQALR-----EQAA----------S-IATK--------------------------LVSVRKVWRSPLAWQVTLFMGLQS  221 (395)
T ss_pred             hhccc-----cccc----------c-cccc--------------------------cccccccccCchhHHHHHHHHhhH
Confidence            33211     0000          0 0000                          012235789998777777777777


Q ss_pred             HHHHHHHHhHHhhccCCCccHHHHH---HHHHHHhHhHHHHHHHHHhhc-CCchHHHHHHHHHHHHHHHHHhcCCchHHH
Q 039541          339 FGIGVVYFGLLLGVGNLSFNIYLSL---AFNGLLDIPAYLLTFILIERW-SRKSSILTFCILSGTCSAICVAIGDEQEVL  414 (521)
Q Consensus       339 ~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~g~l~dr~-g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~  414 (521)
                      +........+|.++.+.|.+....+   .+..+.+++.++....+.+|. ++|........++.++...+.+.+....+ 
T Consensus       222 ~~~Y~~~~WLP~ili~~G~sa~~aG~llsl~~l~~~~~~ll~P~la~R~~n~r~~~~~~~~~~l~G~~G~~~~P~~~~~-  300 (395)
T COG2807         222 LLYYIVIGWLPAILIDRGLSAAEAGSLLSLMQLAQLPTALLIPLLARRSKNQRPLVVLALLLMLVGLVGLLLAPGQLPI-  300 (395)
T ss_pred             HHHHHHHHHHHHHHHHcCCCHHHhhhHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHhhhhHHH-
Confidence            7766666667888888888876655   445567778889999999975 46667777777778887777776666432 


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhccccC-chhhhhhhHHHHHhhhhhhhHHHHHHHhhc---cchhHHHHHHHHHHHHHh
Q 039541          415 QIGLELASFFSACVAFNVLLVFGTELFT-TCVRNSTTSLVRQAVNLGAAFSPVLISAGR---QNEFLSFGVFGLVVFCFG  490 (521)
Q Consensus       415 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~r~~~~~~~~~~~~~g~~~~p~~~~~~~---~~~~~~~~~~~~~~~~~~  490 (521)
                      .  ..++.|++.++.++...+++.+..+ ++..+.-.|+.+.++++-+.+||++.|+.+   .++...+..++.+.+...
T Consensus       301 l--w~~llG~G~G~~F~laL~li~~rs~~a~~Aa~LSgmaQg~GYllAa~GP~l~G~lhDa~gsw~~~~~~l~~~~i~m~  378 (395)
T COG2807         301 L--WALLLGLGQGGAFPLALTLILLRSSDAAIAAALSGMAQGVGYLLAAFGPWLFGFLHDATGSWSAPLVLLALATLLML  378 (395)
T ss_pred             H--HHHHHhCccchHHHHHHHHHHhhcCChHHHHHHHHHhhhhhHHHHhhhhhhHhHHHHhcCChHHHHHHHHHHHHHHH
Confidence            2  2588899999999988888877664 445567778888888999999999999733   345555555555554444


Q ss_pred             Hh
Q 039541          491 FF  492 (521)
Q Consensus       491 ~~  492 (521)
                      +.
T Consensus       379 i~  380 (395)
T COG2807         379 IF  380 (395)
T ss_pred             HH
Confidence            33

>PRK09669 putative symporter YagG; Provisional

Probab=99.89  E-value=8.2e-21  Score=189.43  Aligned_cols=324  Identities=13%  Similarity=0.054  Sum_probs=219.0

Q ss_pred             CcceeeecceeeCCccccchhhHHHHHHHHHHhhhhhhhccccC--CCCch-HHHHHHHHHHHHHHHHHhcccc------
Q 039541          101 DTTIISDWSLECAGSSILSGLPSSCFFIGCLLGGLALSTLGDSS--SLGRK-KLLFLSCFAMSITALATIFANN------  171 (521)
Q Consensus       101 ~~~i~~~~~~~~~~~~~~~~~~~s~~~lg~~i~~~~~g~l~dr~--~~Grr-~~l~~~~~~~~~~~~~~~~~~~------  171 (521)
                      .+.+.+++|++....    |.+.++..+..++..|+.|+++||+  |+||| +.++.+.+..+++.++....++      
T Consensus        33 ~~~~t~~~gls~~~~----g~i~~i~~i~dai~dp~~G~lsD~~~~r~Grrrp~il~~~~~~~i~~~l~f~~p~~~~~~~  108 (444)
T PRK09669         33 AYFYTDVFGLSAAIM----GTMFLVVRVLDAVTDPLMGALVDRTRTRHGQFRPYLLWFAIPFGVVCLLTFYTPDFGATGK  108 (444)
T ss_pred             HHHHHHhcCCCHHHH----HHHHHHHHHHHHcccceeeEeeecCCCCCCCcchhHHHHHHHHHHHHHHHHhCCCCCcchH
Confidence            455667899998555    9999999999999999999999996  68885 5556677777777766555543      


Q ss_pred             HHHHHHHHHHhhccchhhHhhhhhheeeee-cCcchhHHHHHHHHHHHHHHHHHHHH-----HHhhc---CCchhHHHHH
Q 039541          172 IWIYSTIRFVAGFFRAPIMTSVIVLLSEMV-SKRWRGQVVIIGFTFFSFGLVSLPAV-----AYLSR---GSSWKMLYVW  242 (521)
Q Consensus       172 ~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~-~~~~rg~~~~~~~~~~~~G~~i~~~i-----~~~~~---~~~wr~~f~~  242 (521)
                      ++.+++..++.+.+.........++..|+. ++++|++..++...+..+|..+++.+     ..+..   ..+|+..+.+
T Consensus       109 ~~~~~~~~~l~~~~~t~~~ip~~al~~~~t~~~~eR~~l~~~r~~~~~~G~~i~~~~~~pl~~~~~~~~~~~g~~~~~~i  188 (444)
T PRK09669        109 IIYACVTYILLSLVYTAINVPYCAMPGAITNDPRERHSLQSWRFALSFIGGLIVSVIALPLVDILGKGDEQKGYFYAMMV  188 (444)
T ss_pred             HHHHHHHHHHHHHHHHhhcchHHHhHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhhhHHHHHHH
Confidence            455666666777766667777778899988 56889998888888888877776543     22221   3579988888


Q ss_pred             HHHHHHHHHhhhceeeecchhHHHhcCCHHHHHHHHHHHhhhcCCCCCCCccccccCCCCCccccCCCcccccccHHHHh
Q 039541          243 TSIPSIVCCIIIYPFISESPRWLFIHGHEAEAMAVLKRLASRSNYQSDYGLESCCLSNMPPKAKNVIPKLDLYSSLKDLF  322 (521)
Q Consensus       243 ~~~~~~~~~~~~~~~~~esp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  322 (521)
                      .+++.++..++.++..+|.++.     + +                                    +++.+..++++.++
T Consensus       189 ~~ii~~v~~~~~~~~~~e~~~~-----~-~------------------------------------~~~~~~~~~~~~~~  226 (444)
T PRK09669        189 MGLLGVVLFFCCFFMTKERYTP-----E-V------------------------------------DNSSSVWKDLKLLL  226 (444)
T ss_pred             HHHHHHHHHHHHhCCeEEecCC-----C-C------------------------------------cCCCCHHHHHHHHh
Confidence            8888777765566666663210     0 0                                    00011123677889


Q ss_pred             ccHHHHHHHHHHHHHHHHHHHHHHhHHhhccCCCccH---HHHHHHHHHHhHhHHHHHHHHHhhcCCchHHHHHHHHHHH
Q 039541          323 NRKWALRRLLTIMALAFGIGVVYFGLLLGVGNLSFNI---YLSLAFNGLLDIPAYLLTFILIERWSRKSSILTFCILSGT  399 (521)
Q Consensus       323 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~i  399 (521)
                      +||.++..+...++.............++.+..-.+.   ........+..+++.++.+++.||+|+|+....+..+..+
T Consensus       227 ~n~~~~~l~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~i~~ii~~~~~~~l~~r~gk~~~~~~~~~~~~~  306 (444)
T PRK09669        227 GNSQWRIMFIFNVVLLTAVVTRGGATLYYVNYVLLRPDLATLFLVTGMIAGLFGALLSERLLGKFDRVRAFKWTIVAFVI  306 (444)
T ss_pred             CCchHHHHHHHHHHHHHHHHHHhhhhheeeeeecCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHH
Confidence            9998776655544444443322222233322221111   1222333456677888899999999999998888766655


Q ss_pred             HHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHhhccccCc-------hhhhhhhHHHHHhhhhhhhHHHHHHHh
Q 039541          400 CSAICVAIGDEQEVLQIGLELASFFSACVAFNVLLVFGTELFTT-------CVRNSTTSLVRQAVNLGAAFSPVLISA  470 (521)
Q Consensus       400 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~r~~~~~~~~~~~~~g~~~~p~~~~~  470 (521)
                      ..+.+.+.+..+.+...+..++.+++.+...+..+++.+|..+.       +..|...|..+....+|..++|.+.|.
T Consensus       307 ~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~~~~~~am~ad~~d~~e~~~G~r~~g~~~s~~~~~~klg~alg~~i~g~  384 (444)
T PRK09669        307 LSALIFFIPPSNVWLIFALNILFNFIQNLTTPLQWSMFSDVVDYEEKRSGRRLDGLVFSTNLFAIKLGLAIGGAVVGW  384 (444)
T ss_pred             HHHHHHHhCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhcCcCcchHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44434333333334566667788899999999999999998752       234566788888889999999888764

>PF11700 ATG22: Vacuole effluxer Atg22 like; InterPro: IPR024671 Autophagy is a major survival mechanism in which eukaryotes recycle cellular nutrients during stress conditions

Probab=99.89  E-value=1.1e-19  Score=179.07  Aligned_cols=352  Identities=13%  Similarity=0.055  Sum_probs=250.6

Q ss_pred             ccchhhHHHHHHHHHHhhhhhhhccccCCCCchHHHHH-HHHHHHHHHHHHhcc--ccHHHHHHHHHHhhccchhhHhhh
Q 039541          117 ILSGLPSSCFFIGCLLGGLALSTLGDSSSLGRKKLLFL-SCFAMSITALATIFA--NNIWIYSTIRFVAGFFRAPIMTSV  193 (521)
Q Consensus       117 ~~~~~~~s~~~lg~~i~~~~~g~l~dr~~~Grr~~l~~-~~~~~~~~~~~~~~~--~~~~~l~~~r~l~G~~~g~~~~~~  193 (521)
                      ...++..++..+-.++..|+.|.++|+  -|+||.++. ...+..+++++..+.  .+++...+.-++.-++.+......
T Consensus        70 s~~~~~~sis~l~~all~P~lGa~aD~--~~~Rk~~l~~~~~~~~~~~~~l~~v~~~~~~~~~~l~iia~v~~~~~~vfy  147 (477)
T PF11700_consen   70 SLWLYANSISGLLQALLAPFLGAIADY--GGRRKRFLLIFTLLGVLATALLWFVSPGQWWLALVLFIIANVGYEASNVFY  147 (477)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHcc--cccchHHHHHHHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHHHHHHHHH
Confidence            556888999999999999999999999  887766654 555555666666664  345555555666667888888888


Q ss_pred             hhheeeeecCcch--------------------------hHHHHHHHHHHHHHHHHHHHHHHhh--c-------CCchhH
Q 039541          194 IVLLSEMVSKRWR--------------------------GQVVIIGFTFFSFGLVSLPAVAYLS--R-------GSSWKM  238 (521)
Q Consensus       194 ~~~i~~~~~~~~r--------------------------g~~~~~~~~~~~~G~~i~~~i~~~~--~-------~~~wr~  238 (521)
                      .+++.|..+++++                          ++..+.-.....+|.++..++....  .       ..+-|.
T Consensus       148 na~LP~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vS~~G~a~Gy~G~~v~l~i~l~~~~~~~~~~~~~~~~r~  227 (477)
T PF11700_consen  148 NAYLPDLARPEPRVRAAREPSANGNISDSEYEAVDSLTRGRVSGLGWALGYIGGLVALLISLLLVISPGSTASNTWAIRV  227 (477)
T ss_pred             HHHhHhhcCCChhhhhhhhhhccCCCChhhhhhHHHhhhchhHHHHHHHHHHHHHHHHHHHHHHHHcCCCccccchhhhH
Confidence            9999999998888                          8999888888888888776663321  1       234588


Q ss_pred             HHHHHHHHHHHHHhhhceeeecchhHHHhcCCHHHHHHHHHHHhhhcCCCCCCCccccccCCCCCccccCCCcccccccH
Q 039541          239 LYVWTSIPSIVCCIIIYPFISESPRWLFIHGHEAEAMAVLKRLASRSNYQSDYGLESCCLSNMPPKAKNVIPKLDLYSSL  318 (521)
Q Consensus       239 ~f~~~~~~~~~~~~~~~~~~~esp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  318 (521)
                      .+.+.++..++..+..++++||.|+....+..........+++.+                                 .+
T Consensus       228 ~~~~~a~ww~vfsiP~~~~~~~~~~~~~~~~~~~~~~~g~~~l~~---------------------------------t~  274 (477)
T PF11700_consen  228 AFLIVALWWLVFSIPLFLWLPDRPGPRPLPSGSSYLRFGFKRLWR---------------------------------TF  274 (477)
T ss_pred             HHHHHHHHHHHHHHHHHHhCCCCCCCCCCCcchhHHHHHHHHHHH---------------------------------HH
Confidence            999999988888878888899887521111111222333444422                                 66


Q ss_pred             HHHhccHHHHHHHHHHHHHHHHHHHHHHh-HHhhccCCCccH---HHHHHHHHHHhHhHHHHHHHHHhhcCCc--hHHHH
Q 039541          319 KDLFNRKWALRRLLTIMALAFGIGVVYFG-LLLGVGNLSFNI---YLSLAFNGLLDIPAYLLTFILIERWSRK--SSILT  392 (521)
Q Consensus       319 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~g~l~dr~g~~--~~~~~  392 (521)
                      +++.|.|...+.++..++..-+.+..... ..+..+.++.+.   ....++..+.+++|+++.+++.||+|.|  +++..
T Consensus       275 k~~~~~~~~~~fLia~~l~~dg~~ti~~~~~i~a~~~lg~s~~~l~~~~l~~~i~a~~Ga~~~g~l~~r~g~k~~~~l~~  354 (477)
T PF11700_consen  275 KEIRKLRQLFLFLIAYFLYSDGVNTIISFAGIYATEVLGMSTTQLIVFGLVVQIVAIIGALLFGWLQDRFGPKTKRTLLI  354 (477)
T ss_pred             HHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHH
Confidence            77777777666655555555454444333 333334566654   3444566788899999999999999998  77666


Q ss_pred             HHHHHHHHHHHHHh--c----CCchHHHHHHHHHHHHHHHHHHHHHHHHhhccccCchhhhhhhHHHHHhhhhhhhHHHH
Q 039541          393 FCILSGTCSAICVA--I----GDEQEVLQIGLELASFFSACVAFNVLLVFGTELFTTCVRNSTTSLVRQAVNLGAAFSPV  466 (521)
Q Consensus       393 ~~~~~~i~~~~~~~--~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~p~  466 (521)
                      +.++..+..+.-.+  .    ...+.+..++..++.|++.+..++..-++.+|+.|++..+..+|+....+...+++||+
T Consensus       355 ~l~~~~~i~~~g~~G~~~~~~g~~~~~~f~~~a~~~G~~~G~~qs~sRs~~~~LiP~g~e~efFgly~i~gk~ss~lGPl  434 (477)
T PF11700_consen  355 SLILWIIIPLYGLFGFWPSFFGLKSPWEFWVLAVLIGLFMGGIQSASRSLFSRLIPPGREAEFFGLYAITGKASSWLGPL  434 (477)
T ss_pred             HHHHHHHHHHHHHHHhhhcccCcccHHHHHHHHHHHHHHhhhHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHH
Confidence            66555333332222  1    11222678888889999999999999999999999999999999999999999999999


Q ss_pred             HHHhh---ccchhHHHHHHHHHHHHHhHhhhccccCCCCC
Q 039541          467 LISAG---RQNEFLSFGVFGLVVFCFGFFVVFLPETIGVT  503 (521)
Q Consensus       467 ~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  503 (521)
                      +.+..   ..+....+....++.+++.++.+.++..|+++
T Consensus       435 l~g~i~~~tg~~r~g~~~l~~lf~~gl~ll~~v~~~~g~~  474 (477)
T PF11700_consen  435 LFGLITDATGSQRYGFLFLLVLFLIGLILLFFVDVEKGRE  474 (477)
T ss_pred             HHHHHHHHhCCchhHHHHHHHHHHHHHHHHhhccchhhhh
Confidence            99862   23466777777777777777777776555443

Atg22, Avt3 and Avt4 are partially redundant vacuolar effluxers, which mediate the efflux of leucine and other amino acids resulting from autophagy []. This family also includes other transporter proteins.

>PRK10429 melibiose:sodium symporter; Provisional

Probab=99.88  E-value=3.9e-20  Score=185.67  Aligned_cols=329  Identities=13%  Similarity=0.068  Sum_probs=217.2

Q ss_pred             CcceeeecceeeCCccccchhhHHHHHHHHHHhhhhhhhccccC--CCCc-hHHHHHHHHHHHHHHHHHhcccc------
Q 039541          101 DTTIISDWSLECAGSSILSGLPSSCFFIGCLLGGLALSTLGDSS--SLGR-KKLLFLSCFAMSITALATIFANN------  171 (521)
Q Consensus       101 ~~~i~~~~~~~~~~~~~~~~~~~s~~~lg~~i~~~~~g~l~dr~--~~Gr-r~~l~~~~~~~~~~~~~~~~~~~------  171 (521)
                      ...+.+.+|++....    |.+..+..+.-++..|+.|.++|||  |+|| |+.++++....+++.++....++      
T Consensus        30 ~~yyt~v~Gls~~~v----g~i~~i~ri~dai~dp~~G~lsD~t~sr~Grrrp~il~g~i~~~i~~~llf~~p~~~~~~~  105 (473)
T PRK10429         30 MYYYTDVVGLSVGLV----GTLFLVARIWDAINDPIMGWIVNNTRSRWGKFKPWILIGTLANSVVLFLLFSAHLFEGTAQ  105 (473)
T ss_pred             HHHHHHhcCCCHHHH----HHHHHHHHHHHHHhhchheeehhcCCCCCCCcchhHhhhhHHHHHHHHHHHcCCCCCccHH
Confidence            344556778888554    9999999999999999999999975  5899 56667788887777666654331      


Q ss_pred             HHHHHHHHHHhhccchhhHhhhhhheeeee-cCcchhHHHHHHHHHHHHHHHHHHHH-HHh----h---cCCchhHHHHH
Q 039541          172 IWIYSTIRFVAGFFRAPIMTSVIVLLSEMV-SKRWRGQVVIIGFTFFSFGLVSLPAV-AYL----S---RGSSWKMLYVW  242 (521)
Q Consensus       172 ~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~-~~~~rg~~~~~~~~~~~~G~~i~~~i-~~~----~---~~~~wr~~f~~  242 (521)
                      +..+++..++.+++.........+++.|+. ++++|.+..++-..+.++|..+.+.+ ..+    .   +..+|+....+
T Consensus       106 ~~~~~~~~~l~~~~~t~~~ip~~al~~~lt~~~~eR~~l~~~~~~~~~ig~~~~~~~~~~~~~~~g~~~~~~g~~~~~~i  185 (473)
T PRK10429        106 YVFVCVTYILWGMTYTIMDIPFWSLVPTLTLDKREREQLVPYPRFFASLAGFVTAGFTLPFVNYVGGGDRGFGFQMFTLV  185 (473)
T ss_pred             HHHHHHHHHHHHHHHHHHcchHHhhhHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhhhHHHHHHH
Confidence            335556667778888878888888999998 68999999998777777765554433 221    1   12367887777


Q ss_pred             HHHHHHHHHhhhceeeecchhHHHhcCCHHHHHHHHHHHhhhcCCCCCCCccccccCCCCCccccCCCcccccccHHHHh
Q 039541          243 TSIPSIVCCIIIYPFISESPRWLFIHGHEAEAMAVLKRLASRSNYQSDYGLESCCLSNMPPKAKNVIPKLDLYSSLKDLF  322 (521)
Q Consensus       243 ~~~~~~~~~~~~~~~~~esp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  322 (521)
                      .+++.++..+..++..||.+..    .+.+.                                 +++++.+.++.++.++
T Consensus       186 ~~~~~~~~~~~~~~~~~e~~~~----~~~~~---------------------------------~~~~~~~~~~~~~~~~  228 (473)
T PRK10429        186 LIAFFIVSTIITLRNVHEVYSS----DNQVS---------------------------------AEGSHLTLKDIVALIY  228 (473)
T ss_pred             HHHHHHHHHHHHHcCceecCCc----ccccc---------------------------------ccccCCCHHHHHHHHh
Confidence            7777776665666666764310    00000                                 0000111223566677


Q ss_pred             ccHHHHHHHHHHHHHHHHHHHHHHhHHhhccCCCccHH---HHHHHHHHHhHhHHHHHHHHHhhcCCchHHHHHHHHHHH
Q 039541          323 NRKWALRRLLTIMALAFGIGVVYFGLLLGVGNLSFNIY---LSLAFNGLLDIPAYLLTFILIERWSRKSSILTFCILSGT  399 (521)
Q Consensus       323 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~i  399 (521)
                      +||.++..+...++.+..........+++.+....+..   ....+.++..+++.++.+++.||+|+|+.+.++..+..+
T Consensus       229 ~n~~~~~ll~~~~~~~~~~~~~~~~~~y~~~y~~~~~~~~~~~~~~~~i~~ii~~~~~~~l~~r~gkk~~~~~~~~~~~~  308 (473)
T PRK10429        229 KNDQLSCLLGMALAYNIASNIINGFAIYYFTYVIGDADLFPYYLSYAGAANLVTLILFPRLVKSLSRRILWAGASIFPVL  308 (473)
T ss_pred             cCHHHHHHHHHHHHHHHHHHHHhhheeeEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHH
Confidence            88887666555555554444333333444443322222   222334467788889999999999999998888776665


Q ss_pred             HHHHHHh---cCCchHHHHHHHHHHHHHHHHHHHHHHHHhhccccC-------chhhhhhhHHHHHhhhhhhhHHHHHHH
Q 039541          400 CSAICVA---IGDEQEVLQIGLELASFFSACVAFNVLLVFGTELFT-------TCVRNSTTSLVRQAVNLGAAFSPVLIS  469 (521)
Q Consensus       400 ~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~r~~~~~~~~~~~~~g~~~~p~~~~  469 (521)
                      +.+.+..   ......+...+..++.+++.+...+..+++.+|..+       .+..|...|.......+|..+++.+.|
T Consensus       309 ~~~~~~~~~~~~~~~~~~~~i~~~l~g~~~~~~~~~~~am~ad~id~~e~~tG~R~~G~~~s~~~~~~K~~~al~~~i~g  388 (473)
T PRK10429        309 SCGVLLLMGLAAPHNALLIVIAGILLNIGTALFWVLQVIMVADTVDYGEYKLGIRCESIAYSVQTMVVKGGSAFAAFFIG  388 (473)
T ss_pred             HHHHHHHHhccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHhcCccchhHHHHHHHHHHHHHHHHHHHHHH
Confidence            5544432   222222455566677788888888889999999865       333456788888888899888888776


Q ss_pred             h
Q 039541          470 A  470 (521)
Q Consensus       470 ~  470 (521)
                      +
T Consensus       389 ~  389 (473)
T PRK10429        389 V  389 (473)
T ss_pred             H
Confidence            4

>KOG4686 consensus Predicted sugar transporter [Carbohydrate transport and metabolism]

Probab=99.87  E-value=2.5e-21  Score=167.40  Aligned_cols=360  Identities=11%  Similarity=0.024  Sum_probs=229.8

Q ss_pred             eecCCC--CcceeeecceeeCCccccchhhHHHHHHHHHHhhhhhhhccccCCCCchHHHHHHHHHHHHHHHHHh---cc
Q 039541           95 AWDRPS--DTTIISDWSLECAGSSILSGLPSSCFFIGCLLGGLALSTLGDSSSLGRKKLLFLSCFAMSITALATI---FA  169 (521)
Q Consensus        95 ~~~~~~--~~~i~~~~~~~~~~~~~~~~~~~s~~~lg~~i~~~~~g~l~dr~~~Grr~~l~~~~~~~~~~~~~~~---~~  169 (521)
                      .||+|.  ....+.|.+++.++.    .++.+.|.....+-.++.|++.|| ++|.|..-++-+....+|.++.+   .+
T Consensus        59 cyd~p~alq~~fk~d~ni~~akf----tLlYsvYSwPNvVlcffgGflidr-~fgir~gtii~~~fv~~GqliFa~Ggi~  133 (459)
T KOG4686|consen   59 CYDAPGALQIDFKLDSNIEYAKF----TLLYSVYSWPNVVLCFFGGFLIDR-RFGIRLGTIILCIFVFLGQLIFAAGGIS  133 (459)
T ss_pred             ecCCchhhhhhhhcccccceeee----eeeeeeccCCCEEEeeecceeehh-hhhhhHHHHHHHHHHHHHHHHHHhchHH
Confidence            455554  455666777777555    999999999999999999999999 88988877777777777777765   45


Q ss_pred             ccHHHHHHHHHHhhccchhhHhhhhhheeeeecCcchhHHHHHHHHHHHHHHHHHHHH-HHhhcC-------Cchh----
Q 039541          170 NNIWIYSTIRFVAGFFRAPIMTSVIVLLSEMVSKRWRGQVVIIGFTFFSFGLVSLPAV-AYLSRG-------SSWK----  237 (521)
Q Consensus       170 ~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~rg~~~~~~~~~~~~G~~i~~~i-~~~~~~-------~~wr----  237 (521)
                      +.+|+++++||+.|+|.-...++-..|+.-|+..|+.+.++|+.....-+|..+-..+ +++.+.       .+-.    
T Consensus       134 ~aFw~M~~GRF~FGIGgESlAVaQN~yav~wFKGKELn~vfGlqlSvAR~GstvNf~lm~~ly~~~~~~~~~~ghT~LG~  213 (459)
T KOG4686|consen  134 HAFWTMLAGRFLFGIGGESLAVAQNKYAVYWFKGKELNFVFGLQLSVARLGSTVNFLLMPFLYDTMGRMFPGVGHTLLGL  213 (459)
T ss_pred             HHHHHHHhhheeeccCchhhhhhhcceeEEEecCccccchhhHHHHHHHhhceeeeeecHHHHHHHHHhcccchHHHHHH
Confidence            8999999999999999998888999999999999999999999988888887664333 332221       1110    


Q ss_pred             -HHHHH-HHHHHHHHHhhhceeeecchhHHHhcCCHHHHHHHHHHHhhhcCCCCCCCccccccCCCCCccccCCCccccc
Q 039541          238 -MLYVW-TSIPSIVCCIIIYPFISESPRWLFIHGHEAEAMAVLKRLASRSNYQSDYGLESCCLSNMPPKAKNVIPKLDLY  315 (521)
Q Consensus       238 -~~f~~-~~~~~~~~~~~~~~~~~esp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  315 (521)
                       ..+-. .....++.+ ...       .+     ..+.+++.+.+    +++...+.              .+-.     
T Consensus       214 ~l~~~~~tc~~slica-l~l-------g~-----~D~rAerilh~----e~g~~Ge~--------------pkLt-----  257 (459)
T KOG4686|consen  214 WLCFEVKTCKQSLICA-LSL-------GL-----SDDRAERILHL----EEGFLGEE--------------PKLT-----  257 (459)
T ss_pred             HHHHHHHHHHHHHHHH-HHh-------hh-----hhhHHHHHHhh----hcCcccCC--------------cccc-----
Confidence             00000 001111111 000       00     11222222222    11110000              0000     


Q ss_pred             ccHHHHhccHHHHHHHHHHHHHHHHHHHHHHh-HHhhccCCCccHHHHHHH---HHHHhHhHHHHHHHHHhhcCCchHHH
Q 039541          316 SSLKDLFNRKWALRRLLTIMALAFGIGVVYFG-LLLGVGNLSFNIYLSLAF---NGLLDIPAYLLTFILIERWSRKSSIL  391 (521)
Q Consensus       316 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~g~l~dr~g~~~~~~  391 (521)
                       +. .-+ .|.+|...++...++....-.+.. ..++.+.+|.++.....+   .-....+.+++.|.++||+|++...+
T Consensus       258 -dv-~~f-~ppfw~~~iicv~yyva~fPFi~lg~~fF~~rfGlS~~~a~~i~s~vy~Isav~spvfg~i~Dk~G~n~~wv  334 (459)
T KOG4686|consen  258 -DV-NTF-YPPFWVLVIICVLYYVAWFPFITLGPMFFQKRFGLSAVSAGNILSTVYGISAVLSPVFGAISDKYGFNLWWV  334 (459)
T ss_pred             -cc-ccc-CccHHHHHHHHHHHHHHHHHHhhhhHHHHHHhhCCChhhccchhhhhhhhhhhhhhhHHHhHhhhcceehhH
Confidence             00 012 234555555554444443322222 233445567665443322   22445567788999999999998877


Q ss_pred             HHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHhhccccCchhhhhhhHHHHHhhhhhhhHHHHHHHhh
Q 039541          392 TFCILSGTCSAICVAIGDEQEVLQIGLELASFFSACVAFNVLLVFGTELFTTCVRNSTTSLVRQAVNLGAAFSPVLISAG  471 (521)
Q Consensus       392 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~p~~~~~~  471 (521)
                      .+..+..+..=...+...   +..++.+.+.|..........|..++.+.|+++-|++.|++....++|-.+.|++.|..
T Consensus       335 ~~a~~~tl~~H~~l~Ft~---lsPy~~m~~lGLsysllAcslWP~va~~vpE~qLGTaygf~qsIqNLgla~i~Iiag~i  411 (459)
T KOG4686|consen  335 ASACILTLLGHSGLFFTF---LSPYTSMTFLGLSYSLLACSLWPCVASLVPEEQLGTAYGFIQSIQNLGLAFIPIIAGFI  411 (459)
T ss_pred             HHHHHHHHHHhhhHHhhh---ccHHHHHHHHhhhHHHHHHHHhhhhhhhCCHHHhcchHHHHHHHHhhhhhHHhhhhhee
Confidence            766655554433333222   34567788889888888888999999999999999999999999999999999999862


Q ss_pred             c------cchhHHHHHHHHHHHHHhHhhhccccCCC
Q 039541          472 R------QNEFLSFGVFGLVVFCFGFFVVFLPETIG  501 (521)
Q Consensus       472 ~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  501 (521)
                      .      .+....|++++..++....+.+++.++.+
T Consensus       412 ~d~~g~y~~le~ffl~~~~~aL~svgil~~~N~kq~  447 (459)
T KOG4686|consen  412 ADGDGSYDNLEAFFLIIGLMALTSVGILFYLNKKQS  447 (459)
T ss_pred             ecCCCchhhHHHHHHHHHHHHHHHHHHHhheecccc
Confidence            1      12334566666666666666666544333

>PRK09848 glucuronide transporter; Provisional

Probab=99.87  E-value=1.2e-19  Score=181.27  Aligned_cols=323  Identities=12%  Similarity=0.037  Sum_probs=208.6

Q ss_pred             CcceeeecceeeCCccccchhhHHHHHHHHHHhhhhhhhccccC--CCCchHHH-HHHHHHHHHHHHHHh-c----ccc-
Q 039541          101 DTTIISDWSLECAGSSILSGLPSSCFFIGCLLGGLALSTLGDSS--SLGRKKLL-FLSCFAMSITALATI-F----ANN-  171 (521)
Q Consensus       101 ~~~i~~~~~~~~~~~~~~~~~~~s~~~lg~~i~~~~~g~l~dr~--~~Grr~~l-~~~~~~~~~~~~~~~-~----~~~-  171 (521)
                      .+.+.+.+|++..+.    |.+.+...+..++..++.|+++||+  |+|||+.+ +++.+...+..++.. .    +++ 
T Consensus        32 ~~y~~~~~gl~~~~~----g~~~~~~~~~~~~~~~~~G~l~Dr~~~~~Gr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  107 (448)
T PRK09848         32 LSYYTDVAGVGAAAA----GTMLLLVRVFDAFADVFAGRVVDSVNTRWGKFRPFLLFGTAPLMIFSVLVFWVPTDWSHSS  107 (448)
T ss_pred             HHHHHHHcCCCHHHH----HHHHHHHHHHHHHhhhhheeeeecCCCCCcCchHHHHHHHHHHHHHHHHHHhCcCCCCcch
Confidence            345667788888555    9999999999999999999999994  45887755 555554554444432 1    112 


Q ss_pred             -HHHHHHHHHHhhccchhhHhhhhhheeeeec-CcchhHHHHHHHHHH-----HHHHHHHHHHHHhhc-C--CchhHHHH
Q 039541          172 -IWIYSTIRFVAGFFRAPIMTSVIVLLSEMVS-KRWRGQVVIIGFTFF-----SFGLVSLPAVAYLSR-G--SSWKMLYV  241 (521)
Q Consensus       172 -~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~-~~~rg~~~~~~~~~~-----~~G~~i~~~i~~~~~-~--~~wr~~f~  241 (521)
                       .+.+++..++.+++.+...+...++..+... +++|.+..++-..+.     .+|..++|.++.... .  .+|.....
T Consensus       108 ~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~r~~~~~~r~~~~~~~~~~~~~~~~p~i~~~~g~~~~~~~~~~~~  187 (448)
T PRK09848        108 KVVYAYLTYMGLGLCYSLVNIPYGSLATAMTQQPQSRARLGAARGIAASLTFVCLAFLIGPSIKNSSPEEMVSVYHFWTI  187 (448)
T ss_pred             HHHHHHHHHHHHHHHHHHhcccHhhhhhhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhhhHHHHHH
Confidence             2334455667788887777777777777664 467888776655443     345556666644322 1  12222223


Q ss_pred             HHHHHHHHHHhhhceeeecchhHHHhcCCHHHHHHHHHHHhhhcCCCCCCCccccccCCCCCccccCCCcccccccHHHH
Q 039541          242 WTSIPSIVCCIIIYPFISESPRWLFIHGHEAEAMAVLKRLASRSNYQSDYGLESCCLSNMPPKAKNVIPKLDLYSSLKDL  321 (521)
Q Consensus       242 ~~~~~~~~~~~~~~~~~~esp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  321 (521)
                      +.+++.++..++.+...||+++.     +.                                      ++......++.+
T Consensus       188 ~~~v~~~~~~~~~~~~~~e~~~~-----~~--------------------------------------~~~~~~~~~~~l  224 (448)
T PRK09848        188 VLAIAGMVLYFICFKSTRENVVR-----IV--------------------------------------AQPSLKISLQTL  224 (448)
T ss_pred             HHHHHHHHHHHHHHcCcEeccCC-----Cc--------------------------------------cCCCHHHHHHHH
Confidence            33444444443444455654310     00                                      000111257789


Q ss_pred             hccHHHHHHHHHHHHHHHHHHHHHHhHHhhccC-CCccHHHHHH--H-HHHHhHhHHHHHHHHHhhcCCchHHHHHHHHH
Q 039541          322 FNRKWALRRLLTIMALAFGIGVVYFGLLLGVGN-LSFNIYLSLA--F-NGLLDIPAYLLTFILIERWSRKSSILTFCILS  397 (521)
Q Consensus       322 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~--~-~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~  397 (521)
                      +++|.++...+..++............+++.++ .+.+......  . ..+..+++.++.+++.||+|+|+.+.++..+.
T Consensus       225 ~~n~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~l~~r~g~~~~~~~g~~~~  304 (448)
T PRK09848        225 KRNRPLFMLCIGALCVLISTFAVSASSLFYVRYVLNDTGLFTVLVLVQNLVGTVASAPLVPGMVARIGKKNTFLIGALLG  304 (448)
T ss_pred             hCCchHHHHHHHHHHHHHHHHHHhhhheeeEeeecCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHH
Confidence            999988776666666665555544455665554 3433322221  1 23456678889999999999999999998888


Q ss_pred             HHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHhhccccCch-------hhhhhhHHHHHhhhhhhhHHHHHHHh
Q 039541          398 GTCSAICVAIGDEQEVLQIGLELASFFSACVAFNVLLVFGTELFTTC-------VRNSTTSLVRQAVNLGAAFSPVLISA  470 (521)
Q Consensus       398 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~r~~~~~~~~~~~~~g~~~~p~~~~~  470 (521)
                      .++.+.+.+.+..+.+...+..++.+++.+...+...++.+|..|.+       .+|...|+.+....+|..+++.+.+.
T Consensus       305 ~i~~~~~~~~~~~~~~~~~~~~~l~g~G~~~~~~~~~al~~~~~~~~~~~~g~r~~G~~~~~~~~~~klg~aig~~i~g~  384 (448)
T PRK09848        305 TCGYLLFFWVSVWSLPVALVALAIASIGQGVTMTVMWALEADTVEYGEYLTGVRIEGLTYSLFSFTRKCGQAIGGSIPAF  384 (448)
T ss_pred             HHHHHHHHHcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHhhCccchhHHHHHHHHHHHHHHHHHHHHHHH
Confidence            88777666544333345555667788888888889999998888754       35888999999999999988887753

>TIGR00788 fbt folate/biopterin transporter

Probab=99.87  E-value=2.7e-20  Score=185.50  Aligned_cols=338  Identities=14%  Similarity=0.018  Sum_probs=222.1

Q ss_pred             CcceeeecceeeCCccccchhhHHHHHHHHHHhhhhhhhccccCCCC-----chHHHHHHHHHHH-HHHHHHhccccHHH
Q 039541          101 DTTIISDWSLECAGSSILSGLPSSCFFIGCLLGGLALSTLGDSSSLG-----RKKLLFLSCFAMS-ITALATIFANNIWI  174 (521)
Q Consensus       101 ~~~i~~~~~~~~~~~~~~~~~~~s~~~lg~~i~~~~~g~l~dr~~~G-----rr~~l~~~~~~~~-~~~~~~~~~~~~~~  174 (521)
                      .|.+.+++|++.++.    +...+...+...+-.+ +|+++||  ++     ||+.++++.++.+ ++....+..++...
T Consensus        49 ~~~l~~~lg~s~~~i----~~~~sl~~lpw~~K~l-~g~l~D~--~~i~G~rRr~~l~~~~~l~~~~~~~~l~~~~~~~~  121 (468)
T TIGR00788        49 SPMLTDDLGLDGARY----QRLVGLSSLGWALKPF-AGVMSDT--FPLFGYTKRWYLVLSGLLGSAILYGLLPGKVSSAK  121 (468)
T ss_pred             hHHHHHhcCCCHHHH----HHHHHHHHHHHHHHHH-HHHHHHh--cCCCCccchHHHHHHHHHHHHHHHHhcccccchHH
Confidence            677778899999776    9999999999999766 9999999  97     7787788777763 44444444455444


Q ss_pred             HH-HHHHHhhccchhhHhhhhhheeeeecCcchhHHHH---HHHHHHHHHHHHHHHH-HHhhcCCchhHHHHHHHHHHHH
Q 039541          175 YS-TIRFVAGFFRAPIMTSVIVLLSEMVSKRWRGQVVI---IGFTFFSFGLVSLPAV-AYLSRGSSWKMLYVWTSIPSIV  249 (521)
Q Consensus       175 l~-~~r~l~G~~~g~~~~~~~~~i~~~~~~~~rg~~~~---~~~~~~~~G~~i~~~i-~~~~~~~~wr~~f~~~~~~~~~  249 (521)
                      .. +.+++.+++.+...++.-+++.|..+ +++....+   +......+|.++++.+ |.+.+..+||..|++.+.+.++
T Consensus       122 ~~~~~~~l~~~~~a~~dv~~da~~~e~~~-~~~~~~~~~~s~~~~~~~~G~~vg~~l~G~l~~~~~~~~~f~~~a~l~ll  200 (468)
T TIGR00788       122 VAAAFIFLAALAKALYDVLVDSLYSERIR-ESPSAGPSLVSWMWGASATGGLISSLLGGPLLDKTLTRILFLITAALLLL  200 (468)
T ss_pred             HHHHHHHHHHHHHHHHHHhHHHHHhhhhh-cCCCcCCCeeeHHHHHHHHHHHHHHHHHHHHHHhcCcchHHHHHHHHHHH
Confidence            44 48899999999999999999999998 55544333   3333445899999888 6777778999999998888877


Q ss_pred             HHhhhceeeecchhHHHhcCCHHHHHHHHHHHhhhcCCCCCCCccccccCCCCCccccCCCcccccccHHHHhccHHHHH
Q 039541          250 CCIIIYPFISESPRWLFIHGHEAEAMAVLKRLASRSNYQSDYGLESCCLSNMPPKAKNVIPKLDLYSSLKDLFNRKWALR  329 (521)
Q Consensus       250 ~~~~~~~~~~esp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~  329 (521)
                      .. +..++++|++.....+.+.++.... ...                      .........+.....+..+++|..++
T Consensus       201 ~~-~~~~~~~E~~~~~~~~~~~~~~~~~-~~~----------------------~~~~~~~~~~~~~~l~~~l~~~~i~~  256 (468)
T TIGR00788       201 QL-FVSNLSKERRAFVRPRIGTYLEMNM-ALL----------------------TLGVLANVKVQILGLRGAIQLLEIAK  256 (468)
T ss_pred             HH-HHHHhcccccccccccccccchhhh-hhh----------------------hhhHHHHHHHHHHHHHHHHhcHHHHH
Confidence            75 5567778853100000000000000 000                      00000000000124555677787666


Q ss_pred             HHHHHHH-HHHHHHHHHHhHHhhccCCCccHH---HHHHHHHHHhHhHHHHHHHHHhhcCCchHHHHHHHHHHHHHHHHH
Q 039541          330 RLLTIMA-LAFGIGVVYFGLLLGVGNLSFNIY---LSLAFNGLLDIPAYLLTFILIERWSRKSSILTFCILSGTCSAICV  405 (521)
Q Consensus       330 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~i~~~~~~  405 (521)
                      .++..++ .........+..-+.....|.++.   ......+++.+++..+.+++.+|++.|+++.++.++.+++.+...
T Consensus       257 ~l~fifl~~~~~~~~~~~~f~~~~~~lG~s~~~~G~~~~~~~v~~i~g~~~~~~~~~~~~~r~~l~~~~~l~~~~~~~~~  336 (468)
T TIGR00788       257 PLIFIFLSYANLPGASGSVFCATTQCLPGGPSFSGMSKVVGNLGSLCGVGGYDRFLKTFPYRLLFGVTTLLYTLSSLFDL  336 (468)
T ss_pred             HHHHHHHHHhhcCCCCceeEEEEcccCCCCcchhhhHHHHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHhCce
Confidence            5554444 211111110000011123454443   334456678888889999999999999999999888888765532


Q ss_pred             hcC-C-------chHHHHHHHHHHHHHHHHHHHHHHHHhhccccCchhhhhhhHHHHHhhhhhhhHHHHHHHh
Q 039541          406 AIG-D-------EQEVLQIGLELASFFSACVAFNVLLVFGTELFTTCVRNSTTSLVRQAVNLGAAFSPVLISA  470 (521)
Q Consensus       406 ~~~-~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~p~~~~~  470 (521)
                      ... .       ...+......++.+++.+..+.....++.+..|++.+|+..++.+.+.++|..+++.+.+.
T Consensus       337 ~l~~~~~~~~gi~~~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~p~~~egt~~al~~s~~~lg~~v~~~~gg~  409 (468)
T TIGR00788       337 ILVKRWNLAFGISDEVFVLGDSIIAEVLAQLKFMPFLVLLARLCPSGCESSVFALLASILHLGSSVSGFLGVL  409 (468)
T ss_pred             eeeeccccccCCCCeeeeeehhHHHHHHHHHHHccHHHHHHHhCCCCceehHHHHHHHHHHHHHHHHHHHHHH
Confidence            111 0       1112444556677788888888889999999999999999999999999999999987764

The only functionally characterized members of the family are from protozoa and include FT1, the major folate transporter in Leishmania, and BT1, the Leishmania biopterin/folate transporter. A related protein in Trypanosoma brucei, ESAGIO, shows weak folate/biopterin transport activity.

>PF03825 Nuc_H_symport: Nucleoside H+ symporter

Probab=99.87  E-value=2e-19  Score=174.04  Aligned_cols=321  Identities=14%  Similarity=0.138  Sum_probs=229.1

Q ss_pred             CcceeeecceeeCCccccchhhHHHHHHHHHHhhhhhhhccccCCCC-chHHHHHHHHHHHHHHHHHhccccHHHHHHHH
Q 039541          101 DTTIISDWSLECAGSSILSGLPSSCFFIGCLLGGLALSTLGDSSSLG-RKKLLFLSCFAMSITALATIFANNIWIYSTIR  179 (521)
Q Consensus       101 ~~~i~~~~~~~~~~~~~~~~~~~s~~~lg~~i~~~~~g~l~dr~~~G-rr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r  179 (521)
                      ++..-++.|.+.+|.    |.+.+...+...++++++|.++||  ++ +|+++.+..++.++..+.....++++.+++..
T Consensus        25 ~~~~L~~~G~s~~qI----G~l~a~~~~~~i~~~~~~g~~aDr--~~~~~~~l~~~~l~~~~~~~~~~~~~~f~~~~~~~   98 (400)
T PF03825_consen   25 LPLYLESRGFSGTQI----GILLAVGPLARIVSPPFWGAIADR--FGSAKRILALLSLLSALALLLLAFSSSFWWLFVIM   98 (400)
T ss_pred             HHHHHHhCCCCHHHH----HHHHHHHHHHHHHHHHHHHHHHhH--hhhHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHH
Confidence            455567788988666    999999999999999999999999  86 57788788888888777788889999888888


Q ss_pred             HHhhccchhhHhhhhhheeeeecCcchhHHHHHHHHHHHHHHHHHHHH--HHhhcC---CchhHHHHHHHHHHHHHHhhh
Q 039541          180 FVAGFFRAPIMTSVIVLLSEMVSKRWRGQVVIIGFTFFSFGLVSLPAV--AYLSRG---SSWKMLYVWTSIPSIVCCIII  254 (521)
Q Consensus       180 ~l~G~~~g~~~~~~~~~i~~~~~~~~rg~~~~~~~~~~~~G~~i~~~i--~~~~~~---~~wr~~f~~~~~~~~~~~~~~  254 (521)
                      ++..+......|...++..+...  ++++-.|-.-...++|.+++...  +.+...   .+....+++.+...++.. ..
T Consensus        99 ~l~~~~~~p~~pl~dsi~~~~~~--~~~~~YG~iRlwGSiGf~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ll~-~~  175 (400)
T PF03825_consen   99 LLFSFFFSPTMPLSDSIALSYLG--DRGKDYGRIRLWGSIGFIVAALAFGGLLGGYLGISGTSLIFYIAAILSLLLA-GF  175 (400)
T ss_pred             HHHHHHHccHHHHHHHHHHHHcc--cccCCCCcchhhhhHHHHHHHHHHHHHHHhhhccccccHHHHHHHHHHHHHH-HH
Confidence            88888877788888887777764  23333444455566666555332  222221   223345666665555554 44


Q ss_pred             ceeeecchhHHHhcCCHHHHHHHHHHHhhhcCCCCCCCccccccCCCCCccccCCCcccccccHHHHhccHHHHHHHHHH
Q 039541          255 YPFISESPRWLFIHGHEAEAMAVLKRLASRSNYQSDYGLESCCLSNMPPKAKNVIPKLDLYSSLKDLFNRKWALRRLLTI  334 (521)
Q Consensus       255 ~~~~~esp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~  334 (521)
                      .+.+|+.|..    ++.++                                   ..++....+..+++|+|++...++..
T Consensus       176 ~l~lp~~~~~----~~~~~-----------------------------------~~~~~~~~~~~~llk~~~~~~Fll~~  216 (400)
T PF03825_consen  176 ALFLPKTPPK----RSAKE-----------------------------------SVKKLLGLDALKLLKNPRFLVFLLAA  216 (400)
T ss_pred             HHhCCCCccc----cccCC-----------------------------------CcccccchHHHHHhcCccHHHHHHHH
Confidence            4556776521    00000                                   00000012446799999988777777


Q ss_pred             HHHHHHHHHHHHhHHhhccCCC-ccHHH---HHHHHHHHhHhHHHHHHHHHhhcCCchHHHHHHHHHHHHHHHHHhcCCc
Q 039541          335 MALAFGIGVVYFGLLLGVGNLS-FNIYL---SLAFNGLLDIPAYLLTFILIERWSRKSSILTFCILSGTCSAICVAIGDE  410 (521)
Q Consensus       335 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~---~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~i~~~~~~~~~~~  410 (521)
                      ++........+...+.++++.+ .+...   ...+..+.+++.-...+++.+|+|.++++.++.+..++=..++....++
T Consensus       217 ~l~~~~~~~~~~f~~~yl~~~gg~~~~~~g~~~~l~~~aEi~~f~~~~~~~~r~g~~~ll~~a~~~~~vR~~l~a~~~~~  296 (400)
T PF03825_consen  217 FLIGISHAAYYTFFSIYLQELGGYSGSTIGILWALGVVAEIPFFFFSGRFLKRFGIKWLLLLALVAYAVRWLLYAYFSDP  296 (400)
T ss_pred             HHHHHHHHHHHHHHHHHHHHcccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence            7777777777777777788877 33222   2244557788888999999999999999999999999998888876333


Q ss_pred             hHHHHHH----HHHHHHHHHHHHHHHHHHhhccccCchhhhhhhHHHHHh-hhhhhhHHHHHHHh
Q 039541          411 QEVLQIG----LELASFFSACVAFNVLLVFGTELFTTCVRNSTTSLVRQA-VNLGAAFSPVLISA  470 (521)
Q Consensus       411 ~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~-~~~g~~~~p~~~~~  470 (521)
                      . +...+    ...+-|+.++..+.....++.+..|++.|+++.++.+.. ..+|..+|.++.|+
T Consensus       297 ~-~~~~~~~~l~q~lhG~tf~~~~~a~~~yi~~~~p~~~~at~Q~l~~~~~~Glg~~iG~~igG~  360 (400)
T PF03825_consen  297 W-PFIVALQLLGQLLHGLTFGLFHAASVRYIDRIAPPELRATAQGLYSALSFGLGGAIGSLIGGW  360 (400)
T ss_pred             c-HHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhCCccchHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence            2 22222    234578888889999999999999999999999998876 47888999988886

>COG2211 MelB Na+/melibiose symporter and related transporters [Carbohydrate transport and metabolism]

Probab=99.86  E-value=1.6e-19  Score=172.48  Aligned_cols=328  Identities=14%  Similarity=0.064  Sum_probs=240.8

Q ss_pred             CcceeeecceeeCCccccchhhHHHHHHHHHHhhhhhhhccccC--CCCch-HHHHHHHHHHHHHHHHHhcccc------
Q 039541          101 DTTIISDWSLECAGSSILSGLPSSCFFIGCLLGGLALSTLGDSS--SLGRK-KLLFLSCFAMSITALATIFANN------  171 (521)
Q Consensus       101 ~~~i~~~~~~~~~~~~~~~~~~~s~~~lg~~i~~~~~g~l~dr~--~~Grr-~~l~~~~~~~~~~~~~~~~~~~------  171 (521)
                      +-...+.+|++....    |.+..+.-+--++..|+.|.++|||  |+||+ |.++.+.+..++.+.++-.+++      
T Consensus        36 l~fYTdv~Gis~~~a----G~iflv~RiiDAi~DP~~G~i~D~t~~r~GrfRP~lL~g~ip~~i~~~l~F~~p~~~~~~k  111 (467)
T COG2211          36 LFFYTDVFGLSAALA----GTIFLVARIIDAITDPIMGFIVDRTRSRWGRFRPWLLWGAIPFAIVAVLLFITPDFSMTGK  111 (467)
T ss_pred             HHHHhcccCCcHHHH----HHHHHHHHHHHHHhcchheeeecccccccccccHHHHHHhHHHHHHHHHHHcCCCcccCcc
Confidence            344567889998554    8888888888889999999999997  89985 5567788999999999888773      


Q ss_pred             HHHHHHHHHHhhccchhhHhhhhhheeeee-cCcchhHHHHHHHHHHHHHHHHHH-----HHHHhhc---CCchhHHHHH
Q 039541          172 IWIYSTIRFVAGFFRAPIMTSVIVLLSEMV-SKRWRGQVVIIGFTFFSFGLVSLP-----AVAYLSR---GSSWKMLYVW  242 (521)
Q Consensus       172 ~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~-~~~~rg~~~~~~~~~~~~G~~i~~-----~i~~~~~---~~~wr~~f~~  242 (521)
                      ....++...+.+++.......-.++..|+. ++++|.+..++-+.+.++|.++..     ++..+.+   ..||+..-++
T Consensus       112 ~~ya~vtY~l~~l~YT~vniPy~al~~~iT~d~~ER~~l~s~R~~~~~~g~~l~~~~~~plv~~~g~~~~~~g~~~~~~~  191 (467)
T COG2211         112 LIYALVTYMLLGLGYTLVNIPYGALGPEITQDPQERASLTSWRMVFASLGGLLVAVLFPPLVKLFGGGDKALGYQGTALV  191 (467)
T ss_pred             hHHHHHHHHHHHHHHHheeCchhhcchhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHH
Confidence            455667788888988888888889999998 568999999999999998866543     3334333   4589999999


Q ss_pred             HHHHHHHHHhhhceeeecchhHHHhcCCHHHHHHHHHHHhhhcCCCCCCCccccccCCCCCccccCCCcccccccHHHHh
Q 039541          243 TSIPSIVCCIIIYPFISESPRWLFIHGHEAEAMAVLKRLASRSNYQSDYGLESCCLSNMPPKAKNVIPKLDLYSSLKDLF  322 (521)
Q Consensus       243 ~~~~~~~~~~~~~~~~~esp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  322 (521)
                      .+++..+..+++++..+|.+..                    .+..                  +...+.+.+..+..++
T Consensus       192 ~~vi~~i~~l~~~~~v~ER~~~--------------------~~~~------------------~~~~~~~~~~~~~~~~  233 (467)
T COG2211         192 LGVIGVILLLFCFFNVKERVVE--------------------TQPT------------------KTGVKLKLKDSFLLIF  233 (467)
T ss_pred             HHHHHHHHHHHHHHHhhcccCc--------------------cccC------------------cccccccHHHHHHHHH
Confidence            9988888887777777775420                    0000                  0001111122455788


Q ss_pred             ccHHHHHHHHHHHHHHHHHHHH----HHhHHhhccCCCccHHHHHHHHHHHhHhHHHHHHHHHhhcCCchHHHHHHHHHH
Q 039541          323 NRKWALRRLLTIMALAFGIGVV----YFGLLLGVGNLSFNIYLSLAFNGLLDIPAYLLTFILIERWSRKSSILTFCILSG  398 (521)
Q Consensus       323 ~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~  398 (521)
                      +|+.++..++..++.+.+.+..    .|+..+.+.+................+++.++..++.+|+|+|++..++.++..
T Consensus       234 ~Nrp~~~~l~~~l~~~~~~~i~~s~~~yy~~y~lg~~~l~~~~~~~~~~~~~l~~~~~~p~L~~~~gkk~~~~~~~~~~~  313 (467)
T COG2211         234 KNRPLLLLLLMNLLLFIAFNIRGSIMVYYVTYVLGDPELFAYLLLLASGAGLLIGLILWPRLVKKFGKKKLFLIGLLLLA  313 (467)
T ss_pred             ccchHHHHHHHHHHHHHHHHHHhhhhheeEEEEcCChHHHHHHHHHHHHHHHHHHHHhHHHHHHHhchHHHHHHHHHHHH
Confidence            9998777666555555444333    334444444434444455555666677778999999999999999999999999


Q ss_pred             HHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHhhccccCc-------hhhhhhhHHHHHhhhhhhhHHHHHHHh
Q 039541          399 TCSAICVAIGDEQEVLQIGLELASFFSACVAFNVLLVFGTELFTT-------CVRNSTTSLVRQAVNLGAAFSPVLISA  470 (521)
Q Consensus       399 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~r~~~~~~~~~~~~~g~~~~p~~~~~  470 (521)
                      ++.+.+.+.+....+..++..++.+++.+...++.+++++|..+-       +.-|...|.+.++..+|.+++..+.|+
T Consensus       314 i~~~~~~f~~~~~~~l~~~~~~i~~~g~~~~~~l~wam~~d~vDyge~~TG~R~eGi~~s~~tF~~K~g~ala~~~~g~  392 (467)
T COG2211         314 VGYLLLYFTPAGSVVLIVVALIIAGVGTGIANPLPWAMVADTVDYGEWKTGVRREGIVYSGMTFFRKLGLALAGFIPGW  392 (467)
T ss_pred             HHHHHHHhhcCcchHHHHHHHHHHHHHhhccccccHHHhcchhhHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999988855446667777888999999999999999998642       334777888888888888877766653

>PRK11462 putative transporter; Provisional

Probab=99.85  E-value=1.7e-18  Score=172.60  Aligned_cols=320  Identities=9%  Similarity=0.005  Sum_probs=204.5

Q ss_pred             cceeeecceeeCCccccchhhHHHHHHHHHHhhhhhhhccccC--CCCchHH-HHHHHHHHHHHHHHHhcccc------H
Q 039541          102 TTIISDWSLECAGSSILSGLPSSCFFIGCLLGGLALSTLGDSS--SLGRKKL-LFLSCFAMSITALATIFANN------I  172 (521)
Q Consensus       102 ~~i~~~~~~~~~~~~~~~~~~~s~~~lg~~i~~~~~g~l~dr~--~~Grr~~-l~~~~~~~~~~~~~~~~~~~------~  172 (521)
                      ..+.+.+|++....    |.+..+.-+--++..|+.|.++|||  |+||||. ++++....+++.+++...++      .
T Consensus        34 ~fyt~~~Gl~~~~~----g~i~~~~ri~Dai~Dp~~G~~~D~t~~r~Gr~rp~il~g~i~~~i~~~llf~~p~~s~~~~~  109 (460)
T PRK11462         34 FFYTDIFGIPAGFV----GTMFLVARALDAISDPCMGLLADRTRSRWGKFRPWVLFGALPFGIVCVLAYSTPDLSMNGKM  109 (460)
T ss_pred             HHHHHhhCCCHHHH----HHHHHHHHHHHHHHhhhheehhccCCCCCCCcchhHhHHHHHHHHHHHHHHhCCCCCcchHH
Confidence            34456778888444    8888888889999999999999997  7898655 45677788887777655542      3


Q ss_pred             HHHHHHHHHhhccchhhHhhhhhheeeeec-CcchhHHHHHHHHHHHHHHHHHHHHH-Hhhc-------CCchhHHHHHH
Q 039541          173 WIYSTIRFVAGFFRAPIMTSVIVLLSEMVS-KRWRGQVVIIGFTFFSFGLVSLPAVA-YLSR-------GSSWKMLYVWT  243 (521)
Q Consensus       173 ~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~-~~~rg~~~~~~~~~~~~G~~i~~~i~-~~~~-------~~~wr~~f~~~  243 (521)
                      ..+++..++..++.......-.++..|+.+ +++|++..++...+..+|..+++.+. .+..       ..+|+....+.
T Consensus       110 ~y~~~~~~~~~~~~t~~~ipy~al~~~lt~d~~eRt~l~s~r~~~~~iG~~~~~~~~~plv~~~g~~~~~~g~~~~~~i~  189 (460)
T PRK11462        110 IYAAITYTLLTLLYTVVNIPYCALGGVITNDPTQRISLQSWRFVLATAGGMLSTVLMMPLVNLIGGDNKPLGFQGGIAVL  189 (460)
T ss_pred             HHHHHHHHHHHHHHHHHhccHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhhhHHHHHHHH
Confidence            445666677788888888888888999886 78999999999999998887776552 2211       13688887777


Q ss_pred             HHHHHHHHhhhceeeecchhHHHhcCCHHHHHHHHHHHhhhcCCCCCCCccccccCCCCCccccCCCcccccccHHHHhc
Q 039541          244 SIPSIVCCIIIYPFISESPRWLFIHGHEAEAMAVLKRLASRSNYQSDYGLESCCLSNMPPKAKNVIPKLDLYSSLKDLFN  323 (521)
Q Consensus       244 ~~~~~~~~~~~~~~~~esp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  323 (521)
                      +++.++..++++...+|.++.     +.+                                      +.+.++.++.+++
T Consensus       190 ~ii~~i~~~i~~~~~kE~~~~-----~~~--------------------------------------~~~~~~~l~~~~~  226 (460)
T PRK11462        190 SVVAFMMLAFCFFTTKERVEA-----PPT--------------------------------------TTSMREDLRDIWQ  226 (460)
T ss_pred             HHHHHHHHHHHHhcceeccCC-----Ccc--------------------------------------CCCHHHHHHHHhC
Confidence            777776665555555654210     000                                      0001235677888


Q ss_pred             cHHHHHHHHHHHHHHHHH----HHHHHhHHhhccCCCccHHHHHHHHHHHhHhHHHHHHHHHhhcCCchHHHHHHHHHHH
Q 039541          324 RKWALRRLLTIMALAFGI----GVVYFGLLLGVGNLSFNIYLSLAFNGLLDIPAYLLTFILIERWSRKSSILTFCILSGT  399 (521)
Q Consensus       324 ~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~i  399 (521)
                      |+.++......++.....    ....|...+...+.. ..........+..+++.++++++.||+++|+....+..+..+
T Consensus       227 Nk~~~~l~~~~~~~~~~~~~~~~~~~y~~~y~~g~~~-~~~~~l~~~~i~~iig~~l~~~l~~r~gkk~~~~~~~~~~~~  305 (460)
T PRK11462        227 NDQWRIVGLLTIFNILAVCVRGGAMMYYVTWILGTPE-VFVAFLTTYCVGNLIGSALAKPLTDWKCKVTIFWWTNALLAV  305 (460)
T ss_pred             ChHHHHHHHHHHHHHHHHHHHHhHhhhhhhhhcCChH-HHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHH
Confidence            888665544433333322    222333344332211 112233455577788899999999999999887655554444


Q ss_pred             HHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHhhccccC-------chhhhhhhHHHHHhhhhhhhHHHHHHH
Q 039541          400 CSAICVAIGDEQEVLQIGLELASFFSACVAFNVLLVFGTELFT-------TCVRNSTTSLVRQAVNLGAAFSPVLIS  469 (521)
Q Consensus       400 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~r~~~~~~~~~~~~~g~~~~p~~~~  469 (521)
                      ..+++.+.+....+...+..++.+++.+...+..+.+.+|..+       .+..|...+.......+|..+++.+.|
T Consensus       306 ~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~l~~~m~ad~~d~~e~~tG~r~~g~~~a~~~f~~Klg~alg~~i~g  382 (460)
T PRK11462        306 ISLAMFFVPMQASITMFVFIFVIGVLHQLVTPIQWVMMSDTVDYGEWCNGKRLTGISFAGTLFVLKLGLAFGGALIG  382 (460)
T ss_pred             HHHHHHHhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhHHhcCCCchHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3333434333322233444555666666666677778887765       222344456666777788777776655

>PRK15462 dipeptide/tripeptide permease D; Provisional

Probab=99.83  E-value=3.6e-18  Score=167.82  Aligned_cols=371  Identities=10%  Similarity=-0.009  Sum_probs=216.2

Q ss_pred             ceeeecceeeCCccccchhhHHHHHHHHHHhhhhhhhccccCCC-CchHHHHHHHHHHHHHHHHHhccc-cHHHHHHHHH
Q 039541          103 TIISDWSLECAGSSILSGLPSSCFFIGCLLGGLALSTLGDSSSL-GRKKLLFLSCFAMSITALATIFAN-NIWIYSTIRF  180 (521)
Q Consensus       103 ~i~~~~~~~~~~~~~~~~~~~s~~~lg~~i~~~~~g~l~dr~~~-Grr~~l~~~~~~~~~~~~~~~~~~-~~~~l~~~r~  180 (521)
                      .+.+++|++.++.    +.+.+.+.....++.+++|+++||  + ||||+++++.++.+++.++.+..+ +...++++..
T Consensus        35 yL~~~lgls~~~a----~~i~~~~~~~~~l~~ligG~LaDR--ilGrrr~iliG~il~~lg~lll~~~~~~~~~~~l~l~  108 (493)
T PRK15462         35 YLTNQLKYDDNHA----YELFSAYCSLVYVTPILGGFLADK--VLGNRMAVMLGALLMAIGHVVLGASEIHPSFLYLSLA  108 (493)
T ss_pred             HHHHhcCCCHHHH----HHHHHHHHHHHHHHHHHHHHHHHH--ccCcHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHH
Confidence            3456789998776    999999999999999999999999  9 999999999999999988776543 2233444444


Q ss_pred             HhhccchhhHhhhhhheeeeecCc--chhHHHHHHHHHHHHHHHHHHHH-HHhhcCCchhHHHHHHHHHHHHHHhhhcee
Q 039541          181 VAGFFRAPIMTSVIVLLSEMVSKR--WRGQVVIIGFTFFSFGLVSLPAV-AYLSRGSSWKMLYVWTSIPSIVCCIIIYPF  257 (521)
Q Consensus       181 l~G~~~g~~~~~~~~~i~~~~~~~--~rg~~~~~~~~~~~~G~~i~~~i-~~~~~~~~wr~~f~~~~~~~~~~~~~~~~~  257 (521)
                      +.++|.|...+...++++|.+|++  +|..++++...+.++|..++|.+ +++.+..|||+.|.+.++..++.. +.+..
T Consensus       109 li~iG~G~~~~~~~alv~elfp~~~~~R~sgf~i~Y~~~nlG~~iap~l~g~L~~~~Gw~~~F~iaaigm~l~l-i~~~~  187 (493)
T PRK15462        109 IIVCGYGLFKSNVSCLLGELYEPTDPRRDGGFSLMYAAGNVGSIIAPIACGYAQEEYSWAMGFGLAAVGMIAGL-VIFLC  187 (493)
T ss_pred             HHHHhcccccccHHHHHHHHCCCCCccccceehHHHHHHHHHHHHHHHHHHHHHhhhChHHHHHHHHHHHHHHH-HHHHH
Confidence            555666666777788999999875  79999999999999999999999 777778899999998766444443 22222


Q ss_pred             eecchhHH-H-hcCCHHHHHHHH------------H-HHhhhcCCCCCCCccccccCC-CC----CccccCCCccccccc
Q 039541          258 ISESPRWL-F-IHGHEAEAMAVL------------K-RLASRSNYQSDYGLESCCLSN-MP----PKAKNVIPKLDLYSS  317 (521)
Q Consensus       258 ~~esp~~~-~-~~~~~~~~~~~~------------~-~~~~~~~~~~~~~~~~~~~~~-~~----~~~~~~~~~~~~~~~  317 (521)
                      .++..... . .++..++.+...            . .+....-.. +.......... ..    ..-...+.      +
T Consensus       188 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~------~  260 (493)
T PRK15462        188 GNRHFTHTRGVNKKVLRATNFLLPNWGWLLVLLVATPALITVLFWK-EWSVYALIVATIIGLGVLAKIYRKAE------N  260 (493)
T ss_pred             hhhhhccCCCCCCCCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHhcC------C
Confidence            11110000 0 000000000000            0 000000000 00000000000 00    00000000      0


Q ss_pred             HHHHhccHH--HHHHHHHHHHHHHHHHHHHHhHHhhccC------CC--ccHHHHHHHHHHHhHhHHHHHHHHHhhcCC-
Q 039541          318 LKDLFNRKW--ALRRLLTIMALAFGIGVVYFGLLLGVGN------LS--FNIYLSLAFNGLLDIPAYLLTFILIERWSR-  386 (521)
Q Consensus       318 ~~~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~--~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~-  386 (521)
                        +.-|+|-  +...++....+|....-....+..+.++      .|  .++.....+..+..++.+++.+++-.|..| 
T Consensus       261 --~~er~r~~~~~~l~~~~~~Fw~~~~Q~~~sl~lfa~~~vd~~~~g~~ip~~~~qslNp~~ii~l~P~~a~lw~~l~~~  338 (493)
T PRK15462        261 --QKQRKELGLIVTLTFFSMLFWAFAQQGGSSISLYIDRFVNRDMFGYTVPTAMFQSINAFAVMLCGVFLAWVVKESVAG  338 (493)
T ss_pred             --HHHHhhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhccchhcceeeCHHHHHhHhHHHHHHHHHHHHHHHHHHhcC
Confidence              0001111  0011111122222222222222222221      12  234555566677777777777777666633 


Q ss_pred             -ch-----HHHHHHHHHHHHHHHHHhc----CC---chHHHHHHHHHHHHHHHHHHHHHHHHhhccccCchhhhhhhHHH
Q 039541          387 -KS-----SILTFCILSGTCSAICVAI----GD---EQEVLQIGLELASFFSACVAFNVLLVFGTELFTTCVRNSTTSLV  453 (521)
Q Consensus       387 -~~-----~~~~~~~~~~i~~~~~~~~----~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~  453 (521)
                       |.     =+.+++++++++.+++.+.    ..   .+.++++...++..++.-...|+..++++++.|++.|+..+|..
T Consensus       339 ~~~~s~~~Kfa~g~~~~g~~f~~l~~~~~~~~~~~~~s~~wl~~~~~~~t~gEl~~sPvgls~~~~laP~~~~g~~mg~w  418 (493)
T PRK15462        339 NRTVRIWGKFALGLGLMSAGFCILTLSARWSAMYGHSSLPLMVLGLAVMGFAELFIDPVAMSQITRIEIPGVTGVLTGIY  418 (493)
T ss_pred             CCCCCcHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCcCHHHHHHHHHHHHHHHHHHChHHHHHHHHhChHHHHHHHHHHH
Confidence             21     2567777777777666432    11   22366777888888999999999999999999999999999998


Q ss_pred             HHhh-hhhhhHHHHHHHhhc--------------cchhHHHHHHHHHHHHH
Q 039541          454 RQAV-NLGAAFSPVLISAGR--------------QNEFLSFGVFGLVVFCF  489 (521)
Q Consensus       454 ~~~~-~~g~~~~p~~~~~~~--------------~~~~~~~~~~~~~~~~~  489 (521)
                      .... .+|..++..+.+...              ..+...|...+...++.
T Consensus       419 ~l~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~  469 (493)
T PRK15462        419 MLLSGAIANYLAGVIADQTSQASFDASGAINYSINAYIEVFDQITWGALAC  469 (493)
T ss_pred             HHHHHHHHHHHHHHHHHHhccccCCccccccchhhhHHHHHHHHHHHHHHH
Confidence            6643 566666666655321              12344566666655544

>PF13347 MFS_2: MFS/sugar transport protein

Probab=99.83  E-value=7.5e-19  Score=174.48  Aligned_cols=324  Identities=14%  Similarity=0.107  Sum_probs=238.6

Q ss_pred             CcceeeecceeeCCccccchhhHHHHHHHHHHhhhhhhhccccC--CCCchHHH-HHHHHHHHHHHHHHhcc-c------
Q 039541          101 DTTIISDWSLECAGSSILSGLPSSCFFIGCLLGGLALSTLGDSS--SLGRKKLL-FLSCFAMSITALATIFA-N------  170 (521)
Q Consensus       101 ~~~i~~~~~~~~~~~~~~~~~~~s~~~lg~~i~~~~~g~l~dr~--~~Grr~~l-~~~~~~~~~~~~~~~~~-~------  170 (521)
                      .+.+.+.+++++...    |++..+..+-.++..|+.|.++||+  |+||||.. +++..+.+++.+++... +      
T Consensus        25 ~~f~~~~~gl~~~~~----g~i~~~~~i~dai~dp~~G~~sDr~~tr~Grrrp~~l~g~i~~~~~~~llf~~~p~~~~~~  100 (428)
T PF13347_consen   25 LYFYTDVLGLSPALA----GLILLVGRIWDAITDPLIGYLSDRTRTRWGRRRPWILIGAILLALSFFLLFSPPPAGLSFT  100 (428)
T ss_pred             HHHHHHHcCCCHHHH----HHHHHHHHHhhhhcCCcEEEEEeeecccccccceEeehhhHHHHHHHHHhhccccchhhhh
Confidence            445567778888444    9999999999999999999999954  59976655 56888888888887766 4      


Q ss_pred             -cHHHHHHHHHHhhccchhhHhhhhhheeeeec-CcchhHHHHHHHHHHHHHHHHHHHH-HHhh----cC---CchhHHH
Q 039541          171 -NIWIYSTIRFVAGFFRAPIMTSVIVLLSEMVS-KRWRGQVVIIGFTFFSFGLVSLPAV-AYLS----RG---SSWKMLY  240 (521)
Q Consensus       171 -~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~-~~~rg~~~~~~~~~~~~G~~i~~~i-~~~~----~~---~~wr~~f  240 (521)
                       ....+.+..++..++.........++..|+.+ +++|.+..+.-..+..+|.++...+ +.+.    +.   .+|++..
T Consensus       101 ~~~~~~~~~~~l~~~~~t~~~i~~~al~~~lt~~~~~R~~l~~~~~~~~~~g~~l~~~~~~~l~~~~g~~~~~~~~~~~~  180 (428)
T PF13347_consen  101 AKLVWLFVFYILFDIAYTFVQIPYNALIPELTPDPDERTRLSSWRMIFSMIGSLLASFLAPILVSWFGGGDTSNGYRWMA  180 (428)
T ss_pred             hHHHHHHHHHHHHHHhhhhccCchhhcCccccccHhhhhhHHHHHHHHHHHHHHHHHHHhhhhhhhhccCccchHHHHHH
Confidence             23345677777789988888888999999997 5789999999988888888655444 3222    21   2799999


Q ss_pred             HHHHHHHHHHHhhhceeeecchhHHHhcCCHHHHHHHHHHHhhhcCCCCCCCccccccCCCCCccccCCCcccccccHHH
Q 039541          241 VWTSIPSIVCCIIIYPFISESPRWLFIHGHEAEAMAVLKRLASRSNYQSDYGLESCCLSNMPPKAKNVIPKLDLYSSLKD  320 (521)
Q Consensus       241 ~~~~~~~~~~~~~~~~~~~esp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  320 (521)
                      ++.+++.++..++..+..+|.++      +.+                                  +++++.+.++.+++
T Consensus       181 ~v~~iv~~v~~~i~~~~~ke~~~------~~~----------------------------------~~~~~~~~~~~~~~  220 (428)
T PF13347_consen  181 LVLAIVGLVFFLITFFFVKERSV------EVT----------------------------------EQEKKISLRDSLRS  220 (428)
T ss_pred             HHHHHHHHHHhhhhhheeeeccc------ccc----------------------------------ccccccccccchhh
Confidence            99999999888777788888211      000                                  00111112246788


Q ss_pred             HhccHHHHHHHHHHHHHHHHHHHHH----HhHHhhccCCCccHHHHHHHHHHHhHhHHHHHHHHHhhcCCchHHHHHHHH
Q 039541          321 LFNRKWALRRLLTIMALAFGIGVVY----FGLLLGVGNLSFNIYLSLAFNGLLDIPAYLLTFILIERWSRKSSILTFCIL  396 (521)
Q Consensus       321 l~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~  396 (521)
                      ++++|.++......++.++......    |...+.+.+.+ .......+..+..+++.++.++++||+|+|+.+..+..+
T Consensus       221 ~~~nr~~~~l~~~~~~~~~~~~~~~~~~~y~~~~vl~~~~-~~~~~~~~~~~~~~v~~~~~~~l~~r~gk~~~~~~~~~~  299 (428)
T PF13347_consen  221 LFRNRPFRILLLAFFLQWLAFALMNTFLPYYFTYVLGNEG-LISIFMLIFFVASIVGSPLWGRLSKRFGKKKVYIIGLLL  299 (428)
T ss_pred             hcccchHHHHHHHHHHHHhhhhhhhhHHHHHHHHHhcCch-hhHHHHHHHHHHHHHHHHHHHHHHHHccceeehhhhHHH
Confidence            9999988777666666666544333    33333333322 123333455677888999999999999999999999999


Q ss_pred             HHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHhhccccCch-------hhhhhhHHHHHhhhhhhhHHHHHHH
Q 039541          397 SGTCSAICVAIGDEQEVLQIGLELASFFSACVAFNVLLVFGTELFTTC-------VRNSTTSLVRQAVNLGAAFSPVLIS  469 (521)
Q Consensus       397 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~r~~~~~~~~~~~~~g~~~~p~~~~  469 (521)
                      .+++.+.+.+.+..+.+..++..++.+++.+..+...+++.+|..+.+       ..|...|+.+....++..+++.+.+
T Consensus       300 ~~~~~~~~~~~~~~~~~~~~i~~~l~gi~~~~~~~~~~a~~ad~id~~e~~tg~r~~g~~~s~~~~~~k~~~~la~~i~g  379 (428)
T PF13347_consen  300 AALGFLLLFFLGPGSPWLVLILFILAGIGYGAFFVIPWAMLADVIDYDEWKTGRRREGMYFSVNSFFIKIGQGLAGAIVG  379 (428)
T ss_pred             HHHHHHHHHHHHhhhHHHHHHHHHHhHhhhcccccccccccccchhhHHHhcCCCchHHHHHhhhhhhHHHHHHHHHHHH
Confidence            999988888776333377888889999999999999999999988743       3478888888888888888877765

>COG2270 Permeases of the major facilitator superfamily [General function prediction only]

Probab=99.82  E-value=1e-17  Score=155.02  Aligned_cols=353  Identities=13%  Similarity=0.057  Sum_probs=258.2

Q ss_pred             eeCCccccchhhHHHHHHHHHHhhhhhhhccccCCCCchHHH-HHHHHHHHHHHHHHhcccc---HHHHHHHHHHhhccc
Q 039541          111 ECAGSSILSGLPSSCFFIGCLLGGLALSTLGDSSSLGRKKLL-FLSCFAMSITALATIFANN---IWIYSTIRFVAGFFR  186 (521)
Q Consensus       111 ~~~~~~~~~~~~~s~~~lg~~i~~~~~g~l~dr~~~Grr~~l-~~~~~~~~~~~~~~~~~~~---~~~l~~~r~l~G~~~  186 (521)
                      ++.+.+...+...++..+-.++-+|+.|.++|+  .|+||.. -+...+..++.++..++++   ++..++..++..++.
T Consensus        52 ~~~~~~a~~gy~~aia~llia~LapiLG~iaD~--~g~Rk~~~~~f~~i~i~~~~~L~~i~~~s~~~~~l~~~il~~i~~  129 (438)
T COG2270          52 DPASSTAYWGYASAIAGLLIALLAPILGTIADY--PGPRKKFFGFFTAIGIISTFLLWFIPPGSYLLLLLLFLILASIGF  129 (438)
T ss_pred             CCcchhhHHHHHHHHHHHHHHHHHHHhhhhhcc--CCCcchHHHHHHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHhc
Confidence            444445777999999999999999999999999  9976554 5566666677777777755   445566778889999


Q ss_pred             hhhHhhhhhheeeeecCcchhHHHHHHHHHHHHHHHHHHHHH--Hhh-----------------cCCchhHHHHHHHHHH
Q 039541          187 APIMTSVIVLLSEMVSKRWRGQVVIIGFTFFSFGLVSLPAVA--YLS-----------------RGSSWKMLYVWTSIPS  247 (521)
Q Consensus       187 g~~~~~~~~~i~~~~~~~~rg~~~~~~~~~~~~G~~i~~~i~--~~~-----------------~~~~wr~~f~~~~~~~  247 (521)
                      ....+...+++.+..++++-++..++-.....+|..+.-++.  .+.                 +...-|..+.+.++..
T Consensus       130 ~~s~Vfyds~L~~~~~k~~~~riS~lg~~~gylgs~i~li~~~~~~~~~~~~~~~~~l~~l~~~~~~~~ri~~~l~A~W~  209 (438)
T COG2270         130 EFSNVFYDSMLPRLTTKDNMGRISGLGWALGYLGSVILLIFVVLGFALGQQTGITIILLGLPPADGEDVRITGLLAALWW  209 (438)
T ss_pred             chhheehhhHhhhhcCccccCcccccccccccccchHHHHHHHHHHhcccccceeEEeeccCccccccchhHHHHHHHHH
Confidence            999999999999999998888888776666666666654431  111                 2345788899999998


Q ss_pred             HHHHhhhceeeecchhHHHhcCCHHHHHHHHHHHhhhcCCCCCCCccccccCCCCCccccCCCcccccccHHHHhccHHH
Q 039541          248 IVCCIIIYPFISESPRWLFIHGHEAEAMAVLKRLASRSNYQSDYGLESCCLSNMPPKAKNVIPKLDLYSSLKDLFNRKWA  327 (521)
Q Consensus       248 ~~~~~~~~~~~~esp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~  327 (521)
                      ++..+..++..++.++-.  ....+......+++.                                 .+++++.+++..
T Consensus       210 li~~iPm~~~v~~~~~~~--~~~~~~l~~g~k~L~---------------------------------~t~k~i~~~~~i  254 (438)
T COG2270         210 LLFALPMILNVHDAEKIS--SPPPTALRNGFKELK---------------------------------STFKEIRGRKNL  254 (438)
T ss_pred             HHHHhHHHhccccccccc--ccchHHHHHHHHHHH---------------------------------HHHHHHhcccch
Confidence            888878888888765310  011122223333332                                 267788888876


Q ss_pred             HHHHHHHHHHHHHHHHHH-HhHHhhccCCCccH---HHHHHHHHHHhHhHHHHHHHHHhhcCCchHHHHHHHHHHHHHHH
Q 039541          328 LRRLLTIMALAFGIGVVY-FGLLLGVGNLSFNI---YLSLAFNGLLDIPAYLLTFILIERWSRKSSILTFCILSGTCSAI  403 (521)
Q Consensus       328 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~i~~~~  403 (521)
                      ...++..+++.=+.+... ....+-..+++.+.   ...+....+..++|+++.|++.||+|.|+++.++.++..+.++.
T Consensus       255 ~~FLiA~~~~~DGv~til~~~~~fg~~~~gls~~~lll~g~~~~vvA~lg~ii~g~Ld~rfg~k~vl~~~lvi~~~~~~~  334 (438)
T COG2270         255 VLFLIARFFYIDGVNTILAMGGVFGAADLGLSSTELLLIGIALSVVAALGAIIAGFLDERFGSKPVLMIGLVILSIAALY  334 (438)
T ss_pred             HHHHHHHHHHHhhHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCceeehHHHHHHHHHHHH
Confidence            666666655555554333 33333333556543   44456677888999999999999999999999998888887777


Q ss_pred             HHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHhhccccCchhhhhhhHHHHHhhhhhhhHHHHHHHhh---ccchhHHHH
Q 039541          404 CVAIGDEQEVLQIGLELASFFSACVAFNVLLVFGTELFTTCVRNSTTSLVRQAVNLGAAFSPVLISAG---RQNEFLSFG  480 (521)
Q Consensus       404 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~p~~~~~~---~~~~~~~~~  480 (521)
                      ..+....  ...++..++.+++.+..++..-++..+.+|+++-++.+|+++..+..+++++|++.+..   ..+....+.
T Consensus       335 ~~~~~~~--~~f~i~gll~g~s~G~~qA~SRSy~~~lvp~~k~~~fFglyaltgra~S~~gp~lv~v~t~iTg~~r~g~~  412 (438)
T COG2270         335 LIFLEGE--LDFWILGLLVGTSLGGAQASSRSYLARLVPKGKEGRFFGLYALTGRAASFLGPFLVAVITQITGSSRAGVL  412 (438)
T ss_pred             HHHcccc--HHHHHHHHHHHHhcchHHHHHHHHHHHhCCCccccceeehhhhhhhHHHHHHHHHHHHHHHHhcchhhHHH
Confidence            7666554  45677778889999999999999999999999999999999999999999999999862   334555666


Q ss_pred             HHHHHHHHHhHhhhccccCCCC
Q 039541          481 VFGLVVFCFGFFVVFLPETIGV  502 (521)
Q Consensus       481 ~~~~~~~~~~~~~~~~~~~~~~  502 (521)
                      .+.++..++.+..+.+|..+++
T Consensus       413 ~i~vll~iGl~~L~~v~~~~~~  434 (438)
T COG2270         413 SIIVLLLIGLLLLLRVKVPGRR  434 (438)
T ss_pred             HHHHHHHhhHhhEEeecCCCCc
Confidence            6666666777777777665443

>PF01306 LacY_symp: LacY proton/sugar symporter; InterPro: IPR022814 In bacteria there are a number of families of transport proteins, including symporters and antiporters, that mediate the intake of a variety of sugars with the concomitant uptake of hydrogen ions (proton symporters) []

Probab=99.81  E-value=6.8e-18  Score=159.97  Aligned_cols=353  Identities=13%  Similarity=0.065  Sum_probs=222.5

Q ss_pred             ceeeecceeeCCccccchhhHHHHHHHHHHhhhhhhhccccCCCCchHHHHHHHHHHH--HHHH-HHhcc----ccHH-H
Q 039541          103 TIISDWSLECAGSSILSGLPSSCFFIGCLLGGLALSTLGDSSSLGRKKLLFLSCFAMS--ITAL-ATIFA----NNIW-I  174 (521)
Q Consensus       103 ~i~~~~~~~~~~~~~~~~~~~s~~~lg~~i~~~~~g~l~dr~~~Grr~~l~~~~~~~~--~~~~-~~~~~----~~~~-~  174 (521)
                      -+.++-|++.+|.    |.+.++..+...+.+|+.|.++||  .|.||-++..+.+..  .+.+ ...+.    .|++ .
T Consensus        33 WL~~~~GLs~~~i----G~i~s~~~~~~l~~qp~~G~i~Dk--lg~kK~Ll~~i~~l~~l~~pff~~v~~pll~~n~~lg  106 (412)
T PF01306_consen   33 WLTQVAGLSGTEI----GIIFSAGSLFALLAQPVYGFISDK--LGLKKHLLWFIAILLLLFGPFFIYVFGPLLQSNFWLG  106 (412)
T ss_dssp             HHHHHH---HHHH----HHHHHHHHHHHHHTHHHHHHHHHH--CTTCSHHHHHHHHHHHTCHHHHHHTHHHHHHTT-HHH
T ss_pred             HHccccCCCHHHH----HHHHHHHHHHHHHHHHhHHHhcch--hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3445689999777    999999999999999999999999  997776554333222  2222 21222    3332 3


Q ss_pred             HHHHHHHhhccchhhHhhhhhheeeeecCcchhHHHHHHHHHHHHHHHHHHHH-HHhhcCCchhHHHHHHHHHHHHHHhh
Q 039541          175 YSTIRFVAGFFRAPIMTSVIVLLSEMVSKRWRGQVVIIGFTFFSFGLVSLPAV-AYLSRGSSWKMLYVWTSIPSIVCCII  253 (521)
Q Consensus       175 l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~rg~~~~~~~~~~~~G~~i~~~i-~~~~~~~~wr~~f~~~~~~~~~~~~~  253 (521)
                      .+++-+..|+......++.-+++.++.  ++.+.-.|-.-++.++|.+++..+ |.+.+ .+-+..||+....+++..++
T Consensus       107 ~iig~i~l~~~f~~~~~~~Ea~~er~s--r~~~feYG~~R~wGSig~ai~s~~~G~L~~-i~p~~~fwi~s~~~~il~ll  183 (412)
T PF01306_consen  107 AIIGGIYLGLVFNAGVPLSEAYAERVS--RRNGFEYGRARMWGSIGFAIASLLAGILFN-INPNIIFWIASAAAIILLLL  183 (412)
T ss_dssp             HHHTTTTTTTTTTTHHHHHHHHHHHHH--HHHSS-HHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcccchHHHHHHHHHH--HHhcCCcchHHHHhhHHHHHHHHHhheeee-eCccHHHHHHHHHHHHHHHH
Confidence            444455566666666777777776654  344555666777888888888877 55554 45567888777666666544


Q ss_pred             hceeeecchhHHHhcCCHHHHHHHHHHHhhhcCCCCCCCccccccCCCCCccccCCCcccccccHHHHhccHHHHHHHHH
Q 039541          254 IYPFISESPRWLFIHGHEAEAMAVLKRLASRSNYQSDYGLESCCLSNMPPKAKNVIPKLDLYSSLKDLFNRKWALRRLLT  333 (521)
Q Consensus       254 ~~~~~~esp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~  333 (521)
                      .++.-|+.++.....+                                   .+..+++........+++|+|++|...+.
T Consensus       184 l~~~~~~~~~~~~~~~-----------------------------------~~~~~~~~~~~~~~~~l~k~~~fw~~~l~  228 (412)
T PF01306_consen  184 LLLLKPDVPPQAEVAD-----------------------------------ALGAKKDKVSLKDVLSLFKMRNFWFFVLF  228 (412)
T ss_dssp             HHSS---SSSSS-SST-----------------------------------TSSS------HHHHHHHTTSHHHHHHHHH
T ss_pred             HHHcCCcCchhhhhhc-----------------------------------ccccCCCCCcHHHHHHHhcchhHHHHHHH
Confidence            4444444321100000                                   00000000011256789999998877666


Q ss_pred             HHHHHHHHHHHHHhHHhhc----cCCCccHHHH---HHHHHHHhHhHHHHHHHHHhhcCCchHHHHHHHHHHHHHHHHHh
Q 039541          334 IMALAFGIGVVYFGLLLGV----GNLSFNIYLS---LAFNGLLDIPAYLLTFILIERWSRKSSILTFCILSGTCSAICVA  406 (521)
Q Consensus       334 ~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~---~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~i~~~~~~~  406 (521)
                      ...............+.+.    ++.+.+....   ..+..+.+++...+..++.+|+|.|+.++++..++.+=.....+
T Consensus       229 v~g~~~~Y~vfdqqf~~y~~~~f~~~~~g~~~~G~l~s~~v~~E~~~m~~~p~li~rig~k~~Lllag~i~~iRi~~~~~  308 (412)
T PF01306_consen  229 VIGVAAIYDVFDQQFPIYFASFFQSAGQGNQMYGYLWSVQVFLEALMMFFSPWLINRIGAKNLLLLAGVIMAIRIIGSGF  308 (412)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhcccccChhHHhHHHHHHHHHHHHHHHHHHHHHHhcChHhHHHHHHHHHHHHHHHHhh
Confidence            5555544443332223222    2322222222   23344667788889999999999999999999999999888888


Q ss_pred             cCCchHHHHHHHHHHHHHHHHHHHHHHHHhhccccCchhhhhhhHHH-HHhhhhhhhHHHHHHHh--hccchhHHHHHHH
Q 039541          407 IGDEQEVLQIGLELASFFSACVAFNVLLVFGTELFTTCVRNSTTSLV-RQAVNLGAAFSPVLISA--GRQNEFLSFGVFG  483 (521)
Q Consensus       407 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~-~~~~~~g~~~~p~~~~~--~~~~~~~~~~~~~  483 (521)
                      .++.  +...+.-.+-++-.........-++.+.+|++..++...+. +....+|.++.+.+.|.  +..++..+|.+++
T Consensus       309 ~~~~--~~i~~~klLH~~e~~l~lva~fkYI~~~fd~rlsAt~y~v~~~~~~~~~~~i~s~~~G~lyd~~G~~~tylimg  386 (412)
T PF01306_consen  309 ATNP--WVISLIKLLHALEFPLLLVAAFKYITAHFDKRLSATLYLVGFQFAKQIGIIILSPLAGYLYDRIGFQHTYLIMG  386 (412)
T ss_dssp             --SH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHS-GGGHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hcch--HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHhHHHHHHHHHHHHHHHHHHHHHhhhHHhhHhhcCcHHHHHHHH
Confidence            7766  67788888888888888889999999999999988888885 45668888888888886  3445666788888


Q ss_pred             HHHHHHhHhh-hccccCCC
Q 039541          484 LVVFCFGFFV-VFLPETIG  501 (521)
Q Consensus       484 ~~~~~~~~~~-~~~~~~~~  501 (521)
                      .+.++..++. +.+++.++
T Consensus       387 ~iv~~~~li~~f~l~~~~~  405 (412)
T PF01306_consen  387 LIVLPFTLISAFTLKKDKK  405 (412)
T ss_dssp             HHHHHHHHHHHHHS--SSS
T ss_pred             HHHHHHHHHheeeecCCCc
Confidence            7777666554 44544333

The lacY family of Escherichia coli and Klebsiella pneumoniae are proton/beta-galactoside symporters, which, like most sugar transporters, are integral membrane proteins with 12 predicted transmembrane (TM) regions. Also similar to the lacY family are the rafinose (rafB) and sucrose (cscB) permeases from E. coli []. This entry also includes bacterial phenylproprionate permease.; PDB: 1PV7_B 1PV6_A 2Y5Y_B 2CFQ_A 2V8N_B 2CFP_A.

>KOG2563 consensus Permease of the major facilitator superfamily [General function prediction only]

Probab=99.79  E-value=2.8e-18  Score=159.39  Aligned_cols=357  Identities=11%  Similarity=0.041  Sum_probs=238.4

Q ss_pred             CCChhHHHHHHHHHHHHHHHHHHHhhhhccccCCcccccCCcccccCCccccccccCcceecCCCCcceeeecceeeCCc
Q 039541           36 NLGLPQFIQVILISLLLIFESQQTFISVYTDEEPTWHCINNTTTCSSSSDICTLSKSAWAWDRPSDTTIISDWSLECAGS  115 (521)
Q Consensus        36 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~p~~~c~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~i~~~~~~~~~~~  115 (521)
                      +..++||.+++++++..+.+++....++..                                   .......|+ +.+..
T Consensus        38 rVy~rRW~vLl~~slL~~SN~~qWI~ya~i-----------------------------------~n~~~~~Yg-s~~~~   81 (480)
T KOG2563|consen   38 RVYPRRWVVLLAFSLLNFSNGMQWIQYAPI-----------------------------------NNYVNSFYG-SSSAA   81 (480)
T ss_pred             ccchhHhHHHHHHHHHHhcCcchheeehhH-----------------------------------HHHHHHHhc-chHHH
Confidence            466788999999999988887776666555                                   444555666 44333


Q ss_pred             cccchhhHHHHHHHHHHhhhhhhhccccCCCCchHHHHHHHHHHHHHHHHHhcc------ccHH--HHHHHHHHhhccch
Q 039541          116 SILSGLPSSCFFIGCLLGGLALSTLGDSSSLGRKKLLFLSCFAMSITALATIFA------NNIW--IYSTIRFVAGFFRA  187 (521)
Q Consensus       116 ~~~~~~~~s~~~lg~~i~~~~~g~l~dr~~~Grr~~l~~~~~~~~~~~~~~~~~------~~~~--~l~~~r~l~G~~~g  187 (521)
                          -|+.-+|++.+....+++-|+.||  +|-|..++++..+.++|+.+-..+      +.++  ..+.+..+.+.+.-
T Consensus        82 ----~wlsmIym~v~vp~gf~~mw~ldk--~GLR~a~llgt~ln~iGa~Ir~iss~p~v~~~f~~~l~~~Gq~iaa~Aq~  155 (480)
T KOG2563|consen   82 ----DWLSMIYMVVSVPFGFAAMWILDK--FGLRTALLLGTVLNGIGAWIRLISSLPFVPPLFRRPLTHTGQSIAAAAQP  155 (480)
T ss_pred             ----HHHHHHHHHHHHHHhhHHHHhhcc--cchHHHHHHHHHHHHHHHHHhhhccCccccccchhhhhHHhHHHHHHhhh
Confidence                788999999999999999999999  999999999999999999997766      2345  77788999999888


Q ss_pred             hhHhhhhhheeeeecCcchhHHHHHHHHHHHHHHHHHHHHH-Hhhc------CCchhH--HHHHHHHHHHHHHhhhceee
Q 039541          188 PIMTSVIVLLSEMVSKRWRGQVVIIGFTFFSFGLVSLPAVA-YLSR------GSSWKM--LYVWTSIPSIVCCIIIYPFI  258 (521)
Q Consensus       188 ~~~~~~~~~i~~~~~~~~rg~~~~~~~~~~~~G~~i~~~i~-~~~~------~~~wr~--~f~~~~~~~~~~~~~~~~~~  258 (521)
                      ...........-|+++++|..+..+-.++..+|.+++.++. .+..      +..|..  .|+..+.++.+.+++..+..
T Consensus       156 Fim~lPskiA~~WF~~~qra~A~~~~v~~n~LGvavg~llppilV~~~~~~~~~~~~~~~~f~~~~~l~~l~l~l~~~~~  235 (480)
T KOG2563|consen  156 FILGLPSKIAAVWFPPDQRAIATVLGVMGNPLGVAVGFLLPPILVPSSKDSEDNSWLFFTLFLGVECLAALLLALVLFVF  235 (480)
T ss_pred             HhhccccHHHHhhCCcchhhhhhhHHHhcchHHHHHHhhccceecCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            77777778888899999999999998888888888887774 3322      345655  45544544444443444444


Q ss_pred             ecchhHHHhcCCHHHHHHHHHHHhhhcCCCCCCCccccccCCCCCccccCCCcccccccHHHHhccHHHHHHHHHHHHHH
Q 039541          259 SESPRWLFIHGHEAEAMAVLKRLASRSNYQSDYGLESCCLSNMPPKAKNVIPKLDLYSSLKDLFNRKWALRRLLTIMALA  338 (521)
Q Consensus       259 ~esp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~  338 (521)
                      ++.|+...   ....+..                                 .+.+...+.++.++++++....++..+..
T Consensus       236 ~~~P~tPp---s~s~~~~---------------------------------~~~~f~~si~~~~~n~~F~il~~~ygi~~  279 (480)
T KOG2563|consen  236 TKKPPTPP---SASQAAL---------------------------------QDASFPKSIKSCFKNRQFIILAICYGIGL  279 (480)
T ss_pred             CCCCCCCC---chhHhhh---------------------------------hcCcHHHHHHHHHcCccHHHHHHHHhhhH
Confidence            44332100   0000000                                 01112247888999987544433333332


Q ss_pred             HHHHHHHHhHHhhccCCCc---cHHHHHHHHHHHhHhHHHHHHHHHhhcCCch-HHHHHHHHHHHH-HHHHHhcCCchH-
Q 039541          339 FGIGVVYFGLLLGVGNLSF---NIYLSLAFNGLLDIPAYLLTFILIERWSRKS-SILTFCILSGTC-SAICVAIGDEQE-  412 (521)
Q Consensus       339 ~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~-~~~~~~~~~~i~-~~~~~~~~~~~~-  412 (521)
                      ...+..++.+...+...++   .....+....++++++++++|.+.||.+.-+ .+.+......++ +.+......... 
T Consensus       280 g~F~~l~~~l~~~l~~sgY~~~~aG~ig~l~iv~Gmlga~~~gii~Dktk~fk~~~~v~~~~~~v~~~~l~~~t~~~~~~  359 (480)
T KOG2563|consen  280 GLFNSLSTLLNLALCPSGYEGVFAGYIGALMIVAGMLGALASGIIADKTKKFKLTTLVLYLFALVGTLMLLTCTLFLGDS  359 (480)
T ss_pred             HHHHHHHHHhhhccccccCCccccchhHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhccCCce
Confidence            2333333333322222232   3455566677888999999999999987644 344444444444 222222222211 


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhccccCchhhhhhhHHHHHhhhhhhhHHHHHHHh
Q 039541          413 VLQIGLELASFFSACVAFNVLLVFGTELFTTCVRNSTTSLVRQAVNLGAAFSPVLISA  470 (521)
Q Consensus       413 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~p~~~~~  470 (521)
                      +.......+.|++..+..|+..-+..|..-|..-++..|+.+..+.+-+++-.++.+.
T Consensus       360 viv~~t~~~~g~~~~~~~Pig~ElgvE~TyPv~E~tSsGll~~~gq~f~~~~~~~~~~  417 (480)
T KOG2563|consen  360 VIVFTTCGLLGFFGTGYLPIGFELGVETTYPVAEGTSSGLLNLSGQIFGVILVFIMGI  417 (480)
T ss_pred             EehhhhHHHHHHhhcCCCCcceeeeeeeccccCCcccceeEEeehhHHHHHHHHHHHH
Confidence            4556666777777778888888888887555555889999998888888877777765

>TIGR01272 gluP glucose/galactose transporter

Probab=99.79  E-value=1e-16  Score=150.94  Aligned_cols=268  Identities=11%  Similarity=0.010  Sum_probs=179.1

Q ss_pred             hccccHHHHHHHHHHhhccchhhHhhhhhheeeeecCcchhHHHHHHHHHHHHHHHHHHHH-HHhhcC------------
Q 039541          167 IFANNIWIYSTIRFVAGFFRAPIMTSVIVLLSEMVSKRWRGQVVIIGFTFFSFGLVSLPAV-AYLSRG------------  233 (521)
Q Consensus       167 ~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~rg~~~~~~~~~~~~G~~i~~~i-~~~~~~------------  233 (521)
                      +...+|+.++++-++.|.|.+...+....++++..+++++++.+++.+.+.++|..++|++ +.++..            
T Consensus         5 ~~~~~~~~~l~~~f~~g~G~~~lq~~~n~~v~~~~~~~~~~~~l~~~~~~~~~G~~~gP~i~~~~i~~~~~~~~~~~~~~   84 (310)
T TIGR01272         5 ASQRYYVLFLGALFVLASGLTILQVAANPYVSILGPIETAASRLALTQAFNKLGTTVAPLFGGSLILSGAGDLSMQVATA   84 (310)
T ss_pred             HHhhHHHHHHHHHHHHHhhHHHHHhhHHHHHHHHCCcchHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCCcchhhhhhhh
Confidence            3557899999999999999999999999999999999999999999999999999999999 444421            


Q ss_pred             ----CchhHHHHHHHHHHHHHHhh-hceeeecchhHHHhcCCHHHHHHHHHHHhhhcCCCCCCCccccccCCCCCccccC
Q 039541          234 ----SSWKMLYVWTSIPSIVCCII-IYPFISESPRWLFIHGHEAEAMAVLKRLASRSNYQSDYGLESCCLSNMPPKAKNV  308 (521)
Q Consensus       234 ----~~wr~~f~~~~~~~~~~~~~-~~~~~~esp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  308 (521)
                          .+|+++|++.+.+.++..++ .+..+||.++      +.++  +        .                  ..   
T Consensus        85 ~~~~~~~~~~yl~ia~~~~~~~i~~~~~~~p~~~~------~~~~--~--------~------------------~~---  127 (310)
T TIGR01272        85 NAEAAKVHTPYLLLAGALAVLAIIFAFLPLPELQE------ADVA--R--------V------------------SS---  127 (310)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCCCc------cccc--c--------c------------------cc---
Confidence                47999999776665555422 2223344210      0000  0        0                  00   


Q ss_pred             CCcccccccHHHHhccHHHHHHHHHHHHHHHHHHHHHHhHHhhccC---CCccH---HHHHHHHHHHhHhHHHHHHHHHh
Q 039541          309 IPKLDLYSSLKDLFNRKWALRRLLTIMALAFGIGVVYFGLLLGVGN---LSFNI---YLSLAFNGLLDIPAYLLTFILIE  382 (521)
Q Consensus       309 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~---~~~~~~~~~~~~~~~~~~g~l~d  382 (521)
                      ++.    ...+.++++|..+...+..+++...........+.++.+   .+.+.   .........+.++|+++++++.|
T Consensus       128 ~~~----~~~~~~~~~~~~~l~~~~~f~yvg~e~~~~~w~~~yl~~~~~~g~s~~~a~~~~s~~~~~~~iGr~~~~~l~~  203 (310)
T TIGR01272       128 GDT----TQKTSAFQFTHLVLGALGIFVYVGAEVSAGSFLVNFLSDPHALGLPEDQAAHFTAYTWGGAMVGRFIGSAVMP  203 (310)
T ss_pred             ccc----cchhhHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            000    011235566665543333333322222333333444432   34443   23344555777899999999999


Q ss_pred             hcCCchHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHhhccccCchhhhhhhHHHHHhhhhhhh
Q 039541          383 RWSRKSSILTFCILSGTCSAICVAIGDEQEVLQIGLELASFFSACVAFNVLLVFGTELFTTCVRNSTTSLVRQAVNLGAA  462 (521)
Q Consensus       383 r~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~  462 (521)
                      |+++|+.+.++..+..++.++.......   ......++.+++.+..+|...+...+..|++. +++.++. ..+.+|++
T Consensus       204 r~g~~~~l~~~~~l~~~~~~l~~~~~~~---~~~~~~~l~g~~~s~i~P~~~s~a~~~~~~~~-~~asai~-~~~~~Gg~  278 (310)
T TIGR01272       204 MISQGRYLAFNAFLAVLLSIGAALTHGY---VAMWFVLALGLFNSIMFPTIFSLALNALGRHT-SQGSGIL-CLAIVGGA  278 (310)
T ss_pred             HhCHHHHHHHHHHHHHHHHHHHHHcCCH---HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhh-hhhHHHH-HHHHhcch
Confidence            9999998888887777776555444322   23345667889999999999999999888754 6677775 56789999


Q ss_pred             HHHHHHHhh--ccchhHHHH
Q 039541          463 FSPVLISAG--RQNEFLSFG  480 (521)
Q Consensus       463 ~~p~~~~~~--~~~~~~~~~  480 (521)
                      +.|.+.|..  ..+....+.
T Consensus       279 i~P~l~G~lad~~g~~~a~~  298 (310)
T TIGR01272       279 IVPLLQGSLADCLGIQLAFA  298 (310)
T ss_pred             HHHHHHHHHHHhccchHHHH
Confidence            999988863  234555554

Disruption of the loci leads to the total loss of glucose or galactose uptake in E.coli. Putative transporters in other bacterial species were isolated by functional complementation, which restored it functional activity.

>PF03209 PUCC: PUCC protein; InterPro: IPR004896 This protein is required for high-level transcription of the PUC operon

Probab=99.68  E-value=9.2e-14  Score=129.49  Aligned_cols=321  Identities=15%  Similarity=0.080  Sum_probs=211.7

Q ss_pred             eeeecceeeCCccccchhhHHHHHHHHHHhhhhhhhccccCCCC-----chHHH-HHHHHHHHHHHHHHhcc-----c--
Q 039541          104 IISDWSLECAGSSILSGLPSSCFFIGCLLGGLALSTLGDSSSLG-----RKKLL-FLSCFAMSITALATIFA-----N--  170 (521)
Q Consensus       104 i~~~~~~~~~~~~~~~~~~~s~~~lg~~i~~~~~g~l~dr~~~G-----rr~~l-~~~~~~~~~~~~~~~~~-----~--  170 (521)
                      +..|++++.    +..+.+.+..++... ..+.+|+.+|+  .+     ||..+ ..|.++...+..+..++     .  
T Consensus         6 MIvEL~vpA----~lv~~lval~~~~ap-~R~~~G~~SD~--~~s~~G~rRtPyI~~G~~~~~~g~~~ap~a~~~l~~~~   78 (403)
T PF03209_consen    6 MIVELGVPA----WLVALLVALHYLVAP-LRVWFGHRSDT--HPSILGWRRTPYIWGGTLLQAGGLAIAPFALLLLAESG   78 (403)
T ss_pred             HHHHhccHH----HHHHHHHHHHHHHHH-HHHHhcccccc--CcccCcCCchhhhHHHHHHHHHHHHHHHHHHHHHcccc
Confidence            456777776    566888888776554 58899999999  88     77555 45777777666665543     2  


Q ss_pred             -----cH--H--HHHHHHHHhhccchhhHhhhhhheeeeecCcchhHHHHHHHHHHHHHHHHHHHH-HHhhcCCchhHHH
Q 039541          171 -----NI--W--IYSTIRFVAGFFRAPIMTSVIVLLSEMVSKRWRGQVVIIGFTFFSFGLVSLPAV-AYLSRGSSWKMLY  240 (521)
Q Consensus       171 -----~~--~--~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~rg~~~~~~~~~~~~G~~i~~~i-~~~~~~~~wr~~f  240 (521)
                           +.  +  ...+..++.|+|.+.......++++|..|+++|+++.++......+|.+++..+ +.++++++-.-..
T Consensus        79 ~~~~~~~~~g~~~a~l~F~l~G~G~~~s~T~~lALl~D~~~e~~R~~~v~ivw~Mli~G~iv~ai~~g~lL~~~s~~rL~  158 (403)
T PF03209_consen   79 QQSSGPFWLGLALAALAFLLYGLGVHASGTSFLALLADLAPEERRPRVVAIVWVMLIVGIIVSAIVFGRLLDPFSPERLI  158 (403)
T ss_pred             cccccccHHHHHHHHHHHHHHHhhHhHhHHHHHHHHHhcCCHhhhhhhHHHHHHHHHHHHHHHHHHHHHHccccCHHHHH
Confidence                 22  2  445567899999999999999999999999999999999999999999999888 8888766543322


Q ss_pred             HH---HHHHHHHHHhhhceeeecchhHHHhcCCHHHHHHHHHHHhhhcCCCCCCCccccccCCCCCccccCCCccccccc
Q 039541          241 VW---TSIPSIVCCIIIYPFISESPRWLFIHGHEAEAMAVLKRLASRSNYQSDYGLESCCLSNMPPKAKNVIPKLDLYSS  317 (521)
Q Consensus       241 ~~---~~~~~~~~~~~~~~~~~esp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  317 (521)
                      -+   .+++.++..++..+ -.|.+..                      ..               ...+++++.+..+.
T Consensus       159 ~v~~~~a~i~~~l~~ia~w-g~E~r~~----------------------~~---------------~~~~~~~~~~f~~a  200 (403)
T PF03209_consen  159 QVIQGVALIALLLNLIALW-GQEPRRS----------------------RR---------------AAAAERPRPPFREA  200 (403)
T ss_pred             HHHHHHHHHHHHHHHHHHH-hcccCCc----------------------cc---------------ccCCCCCCccHHHH
Confidence            22   22222222212222 1222100                      00               00011122223346


Q ss_pred             HHHHhccHHHHHHHHHHHHHHHHHHHHHHhH-HhhccCCCccHHHH---HHHHHHHhHhHHHHHHHHHh-hcCCchHHHH
Q 039541          318 LKDLFNRKWALRRLLTIMALAFGIGVVYFGL-LLGVGNLSFNIYLS---LAFNGLLDIPAYLLTFILIE-RWSRKSSILT  392 (521)
Q Consensus       318 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~g~l~d-r~g~~~~~~~  392 (521)
                      ++++..+|+.++.+...++..+..+..--.+ ||--+.++.++...   ....+.+.++|..+.+++.. |.++++...+
T Consensus       201 ~~~~~~~~~a~~f~~fl~l~t~a~~~QD~iLEPygg~Vfgmsv~eTT~Lta~~~~G~L~G~~~~g~~l~~~~~~~~~a~~  280 (403)
T PF03209_consen  201 WRQVWASPQARRFFVFLFLGTLAFFMQDVILEPYGGEVFGMSVGETTRLTAFWGGGTLLGMLLAGFLLSRRLGKKRTAAL  280 (403)
T ss_pred             HHHHHhCCChhHHHHHHHHHHHHHHhhHHHcCCchhHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCchHHHHH
Confidence            7788888886666555554444333222221 22223344444333   34455677778877777666 6788888888


Q ss_pred             HHHHHHHHHHHHHhcCCchH-HHHHHHHHHHHHHHHHHHHHHHHhhccccCchhhhhhhHHHHHhhhhhhhHHHHHHH
Q 039541          393 FCILSGTCSAICVAIGDEQE-VLQIGLELASFFSACVAFNVLLVFGTELFTTCVRNSTTSLVRQAVNLGAAFSPVLIS  469 (521)
Q Consensus       393 ~~~~~~i~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~p~~~~  469 (521)
                      +...+.+++..+.+...... +.+....++.|++.+.......+...+..+++..|..+|.-...+.++..++..+.|
T Consensus       281 G~~~~~~~f~lii~a~~~~~~~~~~~~~~l~G~g~G~f~vgals~mM~lt~~~~aG~~mG~WGaaQA~A~Glg~~~GG  358 (403)
T PF03209_consen  281 GCLLGALAFALIILAGPLGSPWLFRPGVFLLGLGNGLFTVGALSLMMDLTSAGRAGLFMGAWGAAQAIARGLGTFLGG  358 (403)
T ss_pred             HHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHhhhHHHHHHHHHHHhCCCCcchhHHHHHHHHHHHHHHHHHHHHHH
Confidence            88888888776665433322 677888899999999888888888889998888899999888887666665555554

It is an integral membrane protein. The family includes other proteins form Rhodobacter eg. bacteriochlorophyll synthase.

>KOG2325 consensus Predicted transporter/transmembrane protein [General function prediction only]

Probab=99.68  E-value=1.5e-15  Score=145.74  Aligned_cols=185  Identities=17%  Similarity=0.130  Sum_probs=144.0

Q ss_pred             ChhHHHHHHHHHHHHHHHHHHHhhhhccccCCcccccCCcccccCCccccccccCcceecCCCCcceee-ecceeeCCcc
Q 039541           38 GLPQFIQVILISLLLIFESQQTFISVYTDEEPTWHCINNTTTCSSSSDICTLSKSAWAWDRPSDTTIIS-DWSLECAGSS  116 (521)
Q Consensus        38 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~p~~~c~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~i~~-~~~~~~~~~~  116 (521)
                      .+..|+.+.+..+..++.+....++...                           .       .|.+++ |.+.+.    
T Consensus        29 ~~t~wrsi~l~~~~sfl~~v~~sI~~~s---------------------------~-------wpYl~~lD~~A~~----   70 (488)
T KOG2325|consen   29 RKTNWRSIYLALLNSFLVAVQFSIYLTS---------------------------M-------WPYLQKLDPTATA----   70 (488)
T ss_pred             cCCchHhHHHHHHHHHHHhhhheEEEee---------------------------c-------chhhhhcCCCCCc----
Confidence            3556777777777778777776655444                           1       223222 344444    


Q ss_pred             ccchhhHHHHHHHHHHhhhhhhhccccCCCCc-hHHHHHHHHHHHHHHHHH-hcc---c-cHHHHHHHHHHhhccchhhH
Q 039541          117 ILSGLPSSCFFIGCLLGGLALSTLGDSSSLGR-KKLLFLSCFAMSITALAT-IFA---N-NIWIYSTIRFVAGFFRAPIM  190 (521)
Q Consensus       117 ~~~~~~~s~~~lg~~i~~~~~g~l~dr~~~Gr-r~~l~~~~~~~~~~~~~~-~~~---~-~~~~l~~~r~l~G~~~g~~~  190 (521)
                      ...|++.++..+|.+++++.+|....|  .|+ |+.++.+.++..+|+++. ++.   + ..+.++++|++.|+|.| ..
T Consensus        71 ~ffG~viaa~slg~~i~~liF~~Ws~k--~~~~k~Pli~s~ii~~~g~llY~~l~~~~~~~~y~mL~~R~l~Gvg~~-n~  147 (488)
T KOG2325|consen   71 TFFGLVIAASSLGHAIFSLIFGIWSNK--TGSVKKPLIVSFLIAIIGNLLYLALAYVPNGVKYLMLVARILTGVGVG-NF  147 (488)
T ss_pred             chhhHHHHHHHHHHHhcchhhcccccc--cCCcccCHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHcCcCcc-cH
Confidence            445999999999999999999999999  776 888999999999999988 433   3 67899999999999987 67


Q ss_pred             hhhhhheeeeecCcchhHHHHHHHHHHHHHHHHHHHHHHhhcC-----------Cc---hhHHHHHHHHHHHHHHhhhce
Q 039541          191 TSVIVLLSEMVSKRWRGQVVIIGFTFFSFGLVSLPAVAYLSRG-----------SS---WKMLYVWTSIPSIVCCIIIYP  256 (521)
Q Consensus       191 ~~~~~~i~~~~~~~~rg~~~~~~~~~~~~G~~i~~~i~~~~~~-----------~~---wr~~f~~~~~~~~~~~~~~~~  256 (521)
                      ...-+|+++....++|.++++....+..+|.++||.++.....           ..   +..+-|+.+++.++..+++.+
T Consensus       148 a~lR~Y~a~~s~~~dR~rA~a~~~~~~vlg~ilGp~~q~~f~~Lg~~G~~i~~~~~~n~YTap~w~m~i~~i~~~v~i~~  227 (488)
T KOG2325|consen  148 AVLRAYIADASTVEDRPRAFAATSGGFVLGIILGPTIQLAFTPLGEKGFMILPGLIFNMYTAPAWLMAILWIIYIVIILF  227 (488)
T ss_pred             HHHHHHHHhccCccchHHHHHHhhhHHHHHHHHhHHHHHHHhhhcCCceEEcCcceEEecchHHHHHHHHHHHHHHHHHh
Confidence            7888999998888999999999999899999999888543221           11   245778888888888888888


Q ss_pred             eeecchh
Q 039541          257 FISESPR  263 (521)
Q Consensus       257 ~~~esp~  263 (521)
                      +++|.++
T Consensus       228 ~f~E~~~  234 (488)
T KOG2325|consen  228 FFKEVYR  234 (488)
T ss_pred             heeeccc
Confidence            8898754

>PF03137 OATP: Organic Anion Transporter Polypeptide (OATP) family; InterPro: IPR004156 This family consists of several eukaryotic Organic-Anion-Transporting Polypeptides (OATPs)

Probab=99.61  E-value=7.9e-17  Score=161.15  Aligned_cols=352  Identities=15%  Similarity=0.115  Sum_probs=3.0

Q ss_pred             CcceeeecceeeCCccccchhhHHHHHHHHHHhhhhhhhccccCCCCchHHHHHHHHHHHHHHHHHhccc----------
Q 039541          101 DTTIISDWSLECAGSSILSGLPSSCFFIGCLLGGLALSTLGDSSSLGRKKLLFLSCFAMSITALATIFAN----------  170 (521)
Q Consensus       101 ~~~i~~~~~~~~~~~~~~~~~~~s~~~lg~~i~~~~~g~l~dr~~~Grr~~l~~~~~~~~~~~~~~~~~~----------  170 (521)
                      +++|++.|+++..+.    |++.+.+-++..+..++..++.+|  ..|-|.+-+|.++.++|++++++-+          
T Consensus        26 lttiErRF~l~S~~~----G~i~s~~di~~~~~~~~vsy~g~~--~hrprwig~g~~~~~~g~~l~~lPhf~~~~y~~~~   99 (539)
T PF03137_consen   26 LTTIERRFGLSSSQS----GLISSSYDIGSLVVVLFVSYFGGR--GHRPRWIGIGALLMGLGSLLFALPHFLSGPYSYEE   99 (539)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HHHHHHhcCCCHHHH----HHHHHHHHHHHHHHHHHHHHHhhh--cCCcceeeecHHHHHHHHHHHhccHhhcCCCcccc
Confidence            889999999999777    999999999999999999999999  8888888999999999999876510          


Q ss_pred             ----------------------------------------cHHHHHHHHHHhhccchhhHhhhhhheeeeecCcchhHHH
Q 039541          171 ----------------------------------------NIWIYSTIRFVAGFFRAPIMTSVIVLLSEMVSKRWRGQVV  210 (521)
Q Consensus       171 ----------------------------------------~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~rg~~~  210 (521)
                                                              -++.++++.++.|+|....++...+|+-|..++++-+..+
T Consensus       100 ~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~gq~l~GiG~~pl~tLG~tYiDDnv~~~~splYi  179 (539)
T PF03137_consen  100 ASNSNGNSSISSNLCDSSSSSQASSDCQDCCSSSSSSLSGYFYVFILGQLLIGIGATPLYTLGITYIDDNVSKKNSPLYI  179 (539)
T ss_dssp             ----------------------------------------------------SSS-------------------------
T ss_pred             ccccccccccccccccccccccccCccccccccccccchHHHHHHHHHHHHHhccccCCccceeeeeccccccccCccch
Confidence                                                    1357888999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHH-hhc------------------C----CchhHHHHHHHHHHHHHHhhhceeeecchhHHHh
Q 039541          211 IIGFTFFSFGLVSLPAVAY-LSR------------------G----SSWKMLYVWTSIPSIVCCIIIYPFISESPRWLFI  267 (521)
Q Consensus       211 ~~~~~~~~~G~~i~~~i~~-~~~------------------~----~~wr~~f~~~~~~~~~~~~~~~~~~~esp~~~~~  267 (521)
                      |++.+...+|.++|.++|. .+.                  +    ..|..-|++.+.+.++.. +.++++|+.-...  
T Consensus       180 Gi~~~~~~lGPa~Gf~lg~~~L~~yvD~~~~~~~~~~i~p~dp~WvGAWWLGfli~g~~~~l~a-ipl~~FPk~lp~~--  256 (539)
T PF03137_consen  180 GILYAMSILGPALGFLLGSFCLRIYVDFPKVPPDGVGITPSDPRWVGAWWLGFLICGILLFLSA-IPLFFFPKKLPGT--  256 (539)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             hhhhHHhhccHHHHHHHHHHHHhceeCCccccccCCCCCCCCccHHHHHHHHHHHHHHHHHHHH-HHHHcCCccCCCc--
Confidence            9999999999999988853 221                  0    136677777777777777 4445555432111  


Q ss_pred             cCCHHHHHHHHHHHhhhcCCCCCCCccccccCCCCCccccCCCcccccccHHHHhccHHHHHHHHHHHHHHHHHHHHHHh
Q 039541          268 HGHEAEAMAVLKRLASRSNYQSDYGLESCCLSNMPPKAKNVIPKLDLYSSLKDLFNRKWALRRLLTIMALAFGIGVVYFG  347 (521)
Q Consensus       268 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~  347 (521)
                      ++..++.+...++.   .+..      ..+..+.+........-++.....+.+++||.+....+......+........
T Consensus       257 ~~~~~~~~~~~~~~---~~~~------~~~~~~~~~~~~~~~~~~df~~~l~~Ll~Np~f~~~~la~~~~~~~~~G~~tF  327 (539)
T PF03137_consen  257 SERQEEKESSERKE---EDSD------KDSFKDPKSKKSFGKSIKDFPKALKRLLTNPVFMCLILAGVFESFIVSGFATF  327 (539)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             ccccchhhhhhcch---hhhh------hhcccccccccchhhhhhhHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHH
Confidence            00000000000000   0000      00000000000011222344557888999998766666555555555444444


Q ss_pred             HHhhcc-CCCccHHHHHHHHHH----HhHhHHHHHHHHHhhcC--CchHHHHHHHHHHHHHHH---HHhc----------
Q 039541          348 LLLGVG-NLSFNIYLSLAFNGL----LDIPAYLLTFILIERWS--RKSSILTFCILSGTCSAI---CVAI----------  407 (521)
Q Consensus       348 ~~~~~~-~~~~~~~~~~~~~~~----~~~~~~~~~g~l~dr~g--~~~~~~~~~~~~~i~~~~---~~~~----------  407 (521)
                      .|-+++ +++.++..+..+.++    +..+|.+++|++.+|++  .|..+....+...+..+.   +.+.          
T Consensus       328 ~pKylE~QF~~sas~A~~l~G~v~ip~~~~G~llGG~ivkk~kl~~~~~~~~~~v~~~v~~~~~~~~~~~~C~~~~~aGv  407 (539)
T PF03137_consen  328 LPKYLESQFGLSASQASLLTGIVSIPGAALGILLGGYIVKKFKLSARGAAKFCIVVSIVSVILYSPLFFLGCPNPPIAGV  407 (539)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HHHHHHHHhCCCHHHHHHHHhhhhcchhheehheEEEEEEEecCcHHHHHHHHHHHHHHHHHHHHHHHeecCCCCceeee
Confidence            555544 456665555444443    45578899999999975  344444333333333322   1111          


Q ss_pred             --CC----------------------------ch--------H-HHHHHHHHHHHHHHHHHHHHHHHhhccccCchhhhh
Q 039541          408 --GD----------------------------EQ--------E-VLQIGLELASFFSACVAFNVLLVFGTELFTTCVRNS  448 (521)
Q Consensus       408 --~~----------------------------~~--------~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~  448 (521)
                        +.                            .+        . ..+.+..++..+..+.............+|+++|+.
T Consensus       408 ~~~y~~~~~~~~~~~~~~~Cn~~~~~~~~~a~~G~C~~~C~~~~~~Fl~~~~~~~~~~~~~~~p~~~i~LR~V~~~~rs~  487 (539)
T PF03137_consen  408 TVPYHNSTSSSPSCNLTCSCNSCCSSGNGSATPGKCPSDCCNKLIPFLILLFILSFFTFMSQVPSTLITLRCVPPEQRSF  487 (539)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             cCccccccCCCCCCCCCCCCCCccCCCcccccCCCcCcccccccHHHHHHHHHHHHHHHhcccchheeeeccCChhhcch
Confidence              00                            00        0 122233333344444455566667778899999999


Q ss_pred             hhHHHHHhh-hhhhhHHHHHHHh
Q 039541          449 TTSLVRQAV-NLGAAFSPVLISA  470 (521)
Q Consensus       449 ~~~~~~~~~-~~g~~~~p~~~~~  470 (521)
                      +.|+...+. -+|.+-+|++.|.
T Consensus       488 AlGv~~~~~rllg~IPgPIifG~  510 (539)
T PF03137_consen  488 ALGVQWLIIRLLGFIPGPIIFGA  510 (539)
T ss_dssp             -----------------------
T ss_pred             hhhHHHHHHHhhcCcchHHHHhH
Confidence            999998776 4577788999886

Several have been identified mostly in human and rat. Different OATPs vary in tissue distribution and substrate specificity. Since the numbering of different OATPs in particular species was based originally on the order of discovery, similarly numbered OATPs in humans and rats did not necessarily correspond in function, tissue distribution and substrate specificity (in spite of the name, some OATPs also transport organic cations and neutral molecules) so a scheme of using digits for rat OATPs and letters for human ones was introduced []. Prostaglandin transporter (PGT) proteins are also considered to be OATP family members. In addition, the methotrexate transporter OATK is closely related to OATPs. This family also includes several predicted proteins from Caenorhabditis elegans and Drosophila melanogaster. This similarity was not previously noted. Note: Members of this family are described (in the UniProtKB/Swiss-Prot database) as belonging to the SLC21 family of transporters.; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 3MRR_P.

>COG3104 PTR2 Dipeptide/tripeptide permease [Amino acid transport and metabolism]

Probab=99.61  E-value=1.8e-13  Score=130.07  Aligned_cols=379  Identities=13%  Similarity=0.039  Sum_probs=230.0

Q ss_pred             ceeeecceeeCCccccchhhHHHHHHHHHHhhhhhhhccccCCCCchHHHHHHHHHHHHHHHHHhccc--cHHHHHHHHH
Q 039541          103 TIISDWSLECAGSSILSGLPSSCFFIGCLLGGLALSTLGDSSSLGRKKLLFLSCFAMSITALATIFAN--NIWIYSTIRF  180 (521)
Q Consensus       103 ~i~~~~~~~~~~~~~~~~~~~s~~~lg~~i~~~~~g~l~dr~~~Grr~~l~~~~~~~~~~~~~~~~~~--~~~~l~~~r~  180 (521)
                      +..+.+|++++++    .-+.++|.--.-+..+++|+++|| -.|+|+++..|.++.++|.++.+.+.  +...++++-+
T Consensus        51 ~~~~gLg~~~~~A----~~l~~~y~slVY~t~i~GG~laDr-~LG~~~tI~lGail~~iGh~~L~~~~~~~~~gl~i~L~  125 (498)
T COG3104          51 QLGDGLGFDETHA----TGLFSAYGSLVYLTPIIGGWLADR-VLGTRRTIVLGAILMAIGHLVLAISSVSGPGGLYIGLA  125 (498)
T ss_pred             hccccCCcChHhh----HHHHHHHHHHHHHHHHHHHHHHHH-hcchhHHHHHHHHHHHHHHHHHhccccccccHHHHHHH
Confidence            3444467888776    556666665556778899999999 66999999999999999999999984  7889999999


Q ss_pred             HhhccchhhHhhhhhheeeeecCc--chhHHHHHHHHHHHHHHHHHHHH-HHhhcCCchhHHHHHHHHHHHHHHhhhcee
Q 039541          181 VAGFFRAPIMTSVIVLLSEMVSKR--WRGQVVIIGFTFFSFGLVSLPAV-AYLSRGSSWKMLYVWTSIPSIVCCIIIYPF  257 (521)
Q Consensus       181 l~G~~~g~~~~~~~~~i~~~~~~~--~rg~~~~~~~~~~~~G~~i~~~i-~~~~~~~~wr~~f~~~~~~~~~~~~~~~~~  257 (521)
                      +.++|.|..=+...+++.|.+|++  +|-..++++.++.++|.+++|++ +++.+..||+..|.+.++-..+.+ +.+..
T Consensus       126 ~I~iG~Gl~K~NiS~llg~ly~~~DprrD~gFt~fY~~iNiGsl~~p~i~~~~~~~~g~~~gF~~aavGm~~gl-~~f~~  204 (498)
T COG3104         126 LIIVGTGLFKPNISSLLGELYPKDDPRRDGGFTLFYMGINIGSLIAPIITGLLAINYGWHVGFGLAAVGMIIGL-VIFLL  204 (498)
T ss_pred             HHHhccccccccHHHHHHHhcCCCCcccCCCccEEEEEeehHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHH-HHHHH
Confidence            999999999999999999999764  47778889999999999999999 888899999999999888777766 33333


Q ss_pred             eec----ch-----hHHHhcCCHHHHHHHHHHHhhhcCCCCCCCccccccCCCCCccccCCCcccccccHHHHhcc----
Q 039541          258 ISE----SP-----RWLFIHGHEAEAMAVLKRLASRSNYQSDYGLESCCLSNMPPKAKNVIPKLDLYSSLKDLFNR----  324 (521)
Q Consensus       258 ~~e----sp-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~----  324 (521)
                      .+.    ++     ..+..+............+.. ..-.     .....+........ ..-.....-+.+.+++    
T Consensus       205 ~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~-----~~l~~~~~~~~~~~-~~i~~~~~~~~~~~~~~~~~  277 (498)
T COG3104         205 GRRHVKGIGGVPDPNPLSFNFLLPVLGGLVVMILA-ALLT-----LLLNQNTFSGVLLV-ISILIAIIYFAEAFRSPKVF  277 (498)
T ss_pred             ccchhcCCCCCCCccchhhhhhhhhHHHHHHHHHH-HHHH-----HHHHHHHHHHHHHH-HHHHHHHHHHHHHhccCccH
Confidence            321    11     100000000000000000000 0000     00000000000000 0000000000000000    


Q ss_pred             ---HHH---HHHHHHHHHHHHHH-----HHHHHhHHhhccC-CC--ccHHHHHHHHHHHhHhHHHHHHHHHhhcCCc---
Q 039541          325 ---KWA---LRRLLTIMALAFGI-----GVVYFGLLLGVGN-LS--FNIYLSLAFNGLLDIPAYLLTFILIERWSRK---  387 (521)
Q Consensus       325 ---~~~---~~~~~~~~~~~~~~-----~~~~~~~~~~~~~-~~--~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~---  387 (521)
                         ++.   ...++...++|...     ....|.....-.+ .|  .++.....+..+.-++.+++..++..|.+++   
T Consensus       278 ~er~r~~~~~~Lfl~~~iFW~~~~Q~~ssl~~~a~~~v~~~~~g~~vp~~~fQslNp~~Iii~~pI~a~l~~~l~~~~~~  357 (498)
T COG3104         278 DERRRLLAAIPLFLFAVIFWALYEQMGSSLNLYADRNVNRQIFGFEVPPAWFQSLNPFFIILFSPILAALWTKLGRGNKQ  357 (498)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHhhcccccceecCHHHHHhhCHHHHHHHHHHHHHHHhHhhcCCCC
Confidence               111   11122222333322     2222322222222 22  3455666677777777777777777775443   


Q ss_pred             ----hHHHHHHHHHHHHHHHHHhc----C---C-chHHHHHHHHHHHHHHHHHHHHHHHHhhccccCchhhhhhhHHHHH
Q 039541          388 ----SSILTFCILSGTCSAICVAI----G---D-EQEVLQIGLELASFFSACVAFNVLLVFGTELFTTCVRNSTTSLVRQ  455 (521)
Q Consensus       388 ----~~~~~~~~~~~i~~~~~~~~----~---~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~  455 (521)
                          .-+.++..+++.+.+++...    .   . .+.++.+...++..++.-...|+...++....|+...+..++....
T Consensus       358 ps~~~KFalGl~l~g~~fl~l~~~~~~~~~~~~~~s~~~lil~y~l~s~gEL~iSpvGLs~~t~laP~~~~s~~ma~wfL  437 (498)
T COG3104         358 PSTPIKFALGLILAGLGFLILLLAGIWFGGPSGLVSVWWLVLSYVLQSFGELFISPVGLSMVTKLAPPALKSFIMAMWFL  437 (498)
T ss_pred             CCcchHHHHHHHHHHHHHHHHHHHHHhhcCCCCCcCHHHHHHHHHHHHHHHHHhCHHHHHHHHHhChHHHHHHHHHHHHH
Confidence                23455566666665555443    1   1 1227788888999999999999999999999999999999988877


Q ss_pred             hhhhhhhHHHHHHHh--------hccchhHHHHHHHHHHHHHhHhhh
Q 039541          456 AVNLGAAFSPVLISA--------GRQNEFLSFGVFGLVVFCFGFFVV  494 (521)
Q Consensus       456 ~~~~g~~~~p~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~  494 (521)
                      ....|..++..+.+.        ........|..++...++..+..+
T Consensus       438 t~a~~~~l~g~va~~~~~~~~~~~~~~~~~~F~~~g~v~i~~~~~~~  484 (498)
T COG3104         438 TVAAGQTLGGQVAGLTAVTDPAYTAFIEGRVFGTIGVVAIVIGILLL  484 (498)
T ss_pred             HHHHHHHhhceecccccccchhhhhhhhhhhHHHHHHHHHHHHHHHH
Confidence            777777666655541        223345566666666665554433

>TIGR00880 2_A_01_02 Multidrug resistance protein

Probab=99.60  E-value=3.5e-15  Score=123.67  Aligned_cols=138  Identities=20%  Similarity=0.321  Sum_probs=123.5

Q ss_pred             hhHHHHHHHHHHhhhhhhhccccCCCCchHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHhhccchhhHhhhhhheeee
Q 039541          121 LPSSCFFIGCLLGGLALSTLGDSSSLGRKKLLFLSCFAMSITALATIFANNIWIYSTIRFVAGFFRAPIMTSVIVLLSEM  200 (521)
Q Consensus       121 ~~~s~~~lg~~i~~~~~g~l~dr~~~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~  200 (521)
                      ++.+.+.++..+++++.|++.||  +|||+.+..+..+..++.+...+.++++.+.+.+++.|++.+...+....++.|.
T Consensus         2 ~~~~~~~~~~~~~~~~~g~~~d~--~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~   79 (141)
T TIGR00880         2 LLLAGYALGQLIYSPLSGLLTDR--FGRKPVLLVGLFIFVLSTAMFALSSNITVLIIARFLQGFGAAFALVAGAALIADI   79 (141)
T ss_pred             EEEEeehhHHHHHHhhHHHHHhh--cchhHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence            34456678899999999999999  9999999999999999999999999999999999999999999999999999999


Q ss_pred             ecCcchhHHHHHHHHHHHHHHHHHHHH-HHhhcCCchhHHHHHHHHHHHHHHhhhceeeec
Q 039541          201 VSKRWRGQVVIIGFTFFSFGLVSLPAV-AYLSRGSSWKMLYVWTSIPSIVCCIIIYPFISE  260 (521)
Q Consensus       201 ~~~~~rg~~~~~~~~~~~~G~~i~~~i-~~~~~~~~wr~~f~~~~~~~~~~~~~~~~~~~e  260 (521)
                      +|+++|+++.++.+....+|..+++.+ +.+.+..+|++.+++.++..++..+..++..||
T Consensus        80 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  140 (141)
T TIGR00880        80 YPPEERGVALGLMSAGIALGPLLGPPLGGVLAQFLGWRAPFLFLAILALAAFILLAFLLPE  140 (141)
T ss_pred             CChhhhhHHHHHHHHhHHHHHHHhHHhHHHHhcccchHHHHHHHHHHHHHHHHHHhhcCCC
Confidence            999999999999999999999999988 667777899999999888877777566555555

>PRK10642 proline/glycine betaine transporter; Provisional

Probab=99.60  E-value=6.1e-15  Score=148.98  Aligned_cols=171  Identities=16%  Similarity=0.151  Sum_probs=128.8

Q ss_pred             eeeecceeeCCccccchhhHHHHHHHHHHhhhhhhhccccCCCCchHHHHHHHHHHHHHHHH---HhccccHHHHHHHHH
Q 039541          104 IISDWSLECAGSSILSGLPSSCFFIGCLLGGLALSTLGDSSSLGRKKLLFLSCFAMSITALA---TIFANNIWIYSTIRF  180 (521)
Q Consensus       104 i~~~~~~~~~~~~~~~~~~~s~~~lg~~i~~~~~g~l~dr~~~Grr~~l~~~~~~~~~~~~~---~~~~~~~~~l~~~r~  180 (521)
                      +++++|.+..+.    ++..+...++..++.++.|+++||  +|||+++..+.++..++.+.   ...+++...++++|+
T Consensus       277 l~~~~g~s~~~~----~~~~~~~~~~~~~~~~~~g~l~dr--~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  350 (490)
T PRK10642        277 LSHNLHYSEDHG----VLIIIAIMIGMLFVQPVMGLLSDR--FGRRPFVILGSVALFVLAIPAFILINSNVIGLIFAGLL  350 (490)
T ss_pred             HHHhcCCCHHHH----HHHHHHHHHHHHHHHHHHHHHHHH--hccHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHH
Confidence            345677776544    777788889999999999999999  99999988877654433322   233456788889999


Q ss_pred             HhhccchhhHhhhhhheeeeecCcchhHHHHHHHHHHHHHHHHHHHH-HHhhcCC-chhHHHHHHHHHHHHHHhhhceee
Q 039541          181 VAGFFRAPIMTSVIVLLSEMVSKRWRGQVVIIGFTFFSFGLVSLPAV-AYLSRGS-SWKMLYVWTSIPSIVCCIIIYPFI  258 (521)
Q Consensus       181 l~G~~~g~~~~~~~~~i~~~~~~~~rg~~~~~~~~~~~~G~~i~~~i-~~~~~~~-~wr~~f~~~~~~~~~~~~~~~~~~  258 (521)
                      +.|++.+........++.|.+|++.|++++++......++..++|.+ +++.+.. +|+.++++..+++++.+ +..+++
T Consensus       351 ~~g~~~~~~~g~~~~~~~~~~p~~~Rg~~~g~~~~~~~~~g~~~p~i~g~l~~~~~~~~~~~~~~~~~~~i~~-~~~~~~  429 (490)
T PRK10642        351 MLAVILNCFTGVMASTLPAMFPTHIRYSALAAAFNISVLVAGLTPTLAAWLVESTQNLMMPAYYLMVVAVIGL-ITGVTM  429 (490)
T ss_pred             HHHHHHHHHHHHHHHHHHHHCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHH-HHHHHh
Confidence            99988877777778888899999999999997444444445566666 7766543 57887777777776666 455667


Q ss_pred             ecchhHHHhc-----CCHHHHHHHHHHH
Q 039541          259 SESPRWLFIH-----GHEAEAMAVLKRL  281 (521)
Q Consensus       259 ~esp~~~~~~-----~~~~~~~~~~~~~  281 (521)
                      ||+|+++.++     ++.+|+++.++++
T Consensus       430 pes~~~~~~~~~~~~~~~~~a~~~l~~~  457 (490)
T PRK10642        430 KETANRPLKGATPAASDIQEAKEILVEH  457 (490)
T ss_pred             ccccCCCCCCccccccchhhHHHHhhcc
Confidence            9999987754     7888888888776

>KOG3626 consensus Organic anion transporter [Secondary metabolites biosynthesis, transport and catabolism]

Probab=99.55  E-value=3.3e-13  Score=135.12  Aligned_cols=346  Identities=14%  Similarity=0.117  Sum_probs=232.4

Q ss_pred             CcceeeecceeeCCccccchhhHHHHHHHHHHhhhhhhhccccCCCCchHHHHHHHHHHHHHHHHHhccc----------
Q 039541          101 DTTIISDWSLECAGSSILSGLPSSCFFIGCLLGGLALSTLGDSSSLGRKKLLFLSCFAMSITALATIFAN----------  170 (521)
Q Consensus       101 ~~~i~~~~~~~~~~~~~~~~~~~s~~~lg~~i~~~~~g~l~dr~~~Grr~~l~~~~~~~~~~~~~~~~~~----------  170 (521)
                      +..|++.|+++.++.    |++.+.+-++..+...+..+..-|  .-|-+.+-+|+++++++++++++-+          
T Consensus       120 IttiErRF~i~Ss~s----G~I~s~~dig~~l~i~fVsYfG~r--~HrPr~Ig~G~~~m~lgsll~alPHf~~~~y~~~~  193 (735)
T KOG3626|consen  120 ITTIERRFKISSSQS----GLIASSYDIGNLLLIIFVSYFGSR--GHRPRWIGIGLVLMGLGSLLFALPHFFSGPYEYEL  193 (735)
T ss_pred             hhhhhhhcCCCCCcc----eeEeeecccchhhhhHhHHHhccc--cCccceeeechhHHHHHHHHHhChHHhcCcchhhh
Confidence            889999999999777    999999999999999999999999  8888889999999999999987720          


Q ss_pred             ---------------------------------------c--HH-HHHHHHHHhhccchhhHhhhhhheeeeecCcchhH
Q 039541          171 ---------------------------------------N--IW-IYSTIRFVAGFFRAPIMTSVIVLLSEMVSKRWRGQ  208 (521)
Q Consensus       171 ---------------------------------------~--~~-~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~rg~  208 (521)
                                                             +  ++ +++++.++.|+|....++...+|+-|...+++-..
T Consensus       194 ~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~llff~~q~l~GIG~Tpi~tlGisYiDDnvk~~~Spl  273 (735)
T KOG3626|consen  194 EVIKQSVENPSSSLSFCCCNKSTNLCRPSPENSKREKESTSYPFLLFFLGQLLLGIGATPIFTLGISYIDDNVKKKNSPL  273 (735)
T ss_pred             hhhhccccCCccccchhhccCCccccCCCCCcccccccCCchhHHHHHHHHHHhhcCCCCCccCCCccccccccccCCcH
Confidence                                                   0  23 67788999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhc----C----------------CchhHHHHHHHHHHHHHHhhhceeeecchhHHHhc
Q 039541          209 VVIIGFTFFSFGLVSLPAVAYLSR----G----------------SSWKMLYVWTSIPSIVCCIIIYPFISESPRWLFIH  268 (521)
Q Consensus       209 ~~~~~~~~~~~G~~i~~~i~~~~~----~----------------~~wr~~f~~~~~~~~~~~~~~~~~~~esp~~~~~~  268 (521)
                      .+|++.....+|.++|.++|.+..    +                ..|+.-|++.+.+.++.. +.++++|.....   .
T Consensus       274 Ylgi~~~~~~lGPaiGfllgS~~l~lYvD~~~~~~~it~~DPrWIGAWWlGFLi~g~~~~~~a-~p~f~fPk~lp~---~  349 (735)
T KOG3626|consen  274 YLGILYSMAILGPAIGFLLGSFCLKLYVDFGLSPIGITPTDPRWIGAWWLGFLICGALLLFSA-VPLFFFPKELPK---S  349 (735)
T ss_pred             HHHHHHHHHHhhhHHHHHHHHHHHHeeeccccCCCCCCCCCcchhhHHHHHHHHHHHHHHHHH-HHHHhCcccCcc---c
Confidence            999999999999999998864421    0                137777888888888888 555666654321   0


Q ss_pred             CCHHHHHHHHHHHhhhcCCCCCCCccccccCCCCCccccCCCcccccccHHHHhccHHHHHHHHHHHHHHHHHHHHHHhH
Q 039541          269 GHEAEAMAVLKRLASRSNYQSDYGLESCCLSNMPPKAKNVIPKLDLYSSLKDLFNRKWALRRLLTIMALAFGIGVVYFGL  348 (521)
Q Consensus       269 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  348 (521)
                      .+..++    ++. + ....        +....+...+..++-++....++.+++||.+...++...+-...+.....++
T Consensus       350 ~~~~~~----~~~-~-~~k~--------~~~~~~~~~~~~~~ikdfp~s~~~ll~N~if~~~~l~~~~~~~~~~G~~tFl  415 (735)
T KOG3626|consen  350 QKRKRA----RDL-H-VLKT--------ESGGAKSDKTFGKKIKDFPKSIKRLLSNPIFMLVVLASVIESLAITGYITFL  415 (735)
T ss_pred             cccchh----hhh-c-cccc--------ccccccCCcchhhhHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHhhHHHhh
Confidence            000000    000 0 0000        0000000011111122344578889999987666666666555555555555


Q ss_pred             Hhhcc-CCCccHHHHHHHHHH----HhHhHHHHHHHHHhhcCC--chHHHHHHHHHHHHH---HHHHhcC----------
Q 039541          349 LLGVG-NLSFNIYLSLAFNGL----LDIPAYLLTFILIERWSR--KSSILTFCILSGTCS---AICVAIG----------  408 (521)
Q Consensus       349 ~~~~~-~~~~~~~~~~~~~~~----~~~~~~~~~g~l~dr~g~--~~~~~~~~~~~~i~~---~~~~~~~----------  408 (521)
                      |-+++ +++.+.+.+..+.+.    +..+|.+++|++++|+.-  |....+..+...+.+   +...+..          
T Consensus       416 PKyLE~Qfg~sas~An~l~G~i~vp~~~~Gi~lGG~iikkfkl~~r~~a~~~~~~~~l~l~~~~~~~~igC~~~~~aG~~  495 (735)
T KOG3626|consen  416 PKYLETQFGISASLANILTGSIGVPAAAVGIFLGGLIIKKFKLSARGAAKFVIVCSVLSLLFYSLLFFIGCESSPVAGVT  495 (735)
T ss_pred             HHHHHHHcCCCHHHHHHHhhhhhhhhhhhhhhccceeeeeecccHHHHHHHHHHHHHHHHHHHHHHHEecCCCCccccee
Confidence            65554 467766655554443    334677889999999753  333333333333332   2222220          


Q ss_pred             ------------C-----------------------------------------c-------------h-----------
Q 039541          409 ------------D-----------------------------------------E-------------Q-----------  411 (521)
Q Consensus       409 ------------~-----------------------------------------~-------------~-----------  411 (521)
                                  .                                         .             .           
T Consensus       496 ~~y~~~~~~~~~~~~~s~Cn~~C~C~~~~~~PVCg~~G~tY~SpChAGC~~~~~~~~~~~~ytnCsCv~~~~~~~~~a~~  575 (735)
T KOG3626|consen  496 NSYEGSPAFTSHENPFSSCNSDCSCDTSEYEPVCGENGITYFSPCHAGCTESSGTSDGNTIYTNCSCVPTNKNGNGSAKK  575 (735)
T ss_pred             cCCCCCCccccCCCchhhhhcCCCCCCcCcCcccCCCCCEEeChhhhCCcccccCCCCceeeccccccccccCCCceeec
Confidence                        0                                         0             0           


Q ss_pred             -------H---HHHHHHHHHHHHHHHHHHHHHHHhhccccCchhhhhhhHHHHHhh-hhhhhHHHHHHHh
Q 039541          412 -------E---VLQIGLELASFFSACVAFNVLLVFGTELFTTCVRNSTTSLVRQAV-NLGAAFSPVLISA  470 (521)
Q Consensus       412 -------~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~-~~g~~~~p~~~~~  470 (521)
                             .   ..+++.+++..|..+......+.++...+|+|+|..++|+..++. -+|.+-+|++.|+
T Consensus       576 G~C~~~c~~~~~~Fl~~~~~~sf~~~~~~~p~~~i~LR~V~~e~ks~AlG~~~~~irllg~IPsPIifG~  645 (735)
T KOG3626|consen  576 GYCPNDCCRQFLIFLALFAIGSFIGALGAVPGMLIVLRCVPPEEKSFALGFQWMLIRLLGFIPSPIIFGA  645 (735)
T ss_pred             CCCCCCcchhhHHHHHHHHHHHHHHHhccCcceEEEEEccCchhchhhhHHHHHHHHHHhcCCchHhhhh
Confidence                   0   123334444444445555677778889999999999999998876 5577788888874

>KOG2816 consensus Predicted transporter ADD1 (major facilitator superfamily) [General function prediction only]

Probab=99.51  E-value=1.1e-11  Score=121.06  Aligned_cols=306  Identities=19%  Similarity=0.234  Sum_probs=201.7

Q ss_pred             HHHHHHHHhhhhhhhccccCCCCchHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHhhccc--hhhHhhhhhheeeeec
Q 039541          125 CFFIGCLLGGLALSTLGDSSSLGRKKLLFLSCFAMSITALATIFANNIWIYSTIRFVAGFFR--APIMTSVIVLLSEMVS  202 (521)
Q Consensus       125 ~~~lg~~i~~~~~g~l~dr~~~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~--g~~~~~~~~~i~~~~~  202 (521)
                      ...+...+.++..|.++||  +|||..+.+.+....+..+...+.. +|.++    +.|+..  +.......++++|...
T Consensus        70 ~~~~~~~i~s~~iG~lSD~--~grk~~L~~~~~~~~l~~~~~~~~~-~~~~~----~~~l~g~~~~~~s~~~a~vadis~  142 (463)
T KOG2816|consen   70 TAGLLTLISSPLIGALSDR--YGRKVVLLLPLFGTILPALCLLFQG-YWFFL----LLGLSGGFSAIFSVGFAYVADISS  142 (463)
T ss_pred             hhHHHHHHHHhhhHHhhhh--hhhhhhHHHHHHHHHHhHHHHHHHH-HHHhh----hcccccchhhhhhhhhhheeeccc
Confidence            3467778899999999999  9999999999998888888877766 44333    445433  3456677889999999


Q ss_pred             CcchhHHHHHHHHHHHHHHHHHHHH-HHhhcCCchhHHHHHHHHHHHHHHhhhceeeecchhHHHhcCCHHHHHHHHHHH
Q 039541          203 KRWRGQVVIIGFTFFSFGLVSLPAV-AYLSRGSSWKMLYVWTSIPSIVCCIIIYPFISESPRWLFIHGHEAEAMAVLKRL  281 (521)
Q Consensus       203 ~~~rg~~~~~~~~~~~~G~~i~~~i-~~~~~~~~wr~~f~~~~~~~~~~~~~~~~~~~esp~~~~~~~~~~~~~~~~~~~  281 (521)
                      .++|....|+....+..+..++|.+ +......|.-.+|.+..+..++..+..++++||+-...    +.++  ...+. 
T Consensus       143 ~~~R~~~~gll~~~~~~~~~~~p~~~~~~~~~~~~a~~f~ia~~~~~~~~~y~~~~l~Esl~~~----~~~~--~~~~~-  215 (463)
T KOG2816|consen  143 EEERSSSIGLLSGTFGAGLVIGPALGGYLVKFLGIALVFLIAAASGILSLLYMLLFLPESLQEK----ERSD--ATLRE-  215 (463)
T ss_pred             hhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHhhccccccCcc----cccc--ccccc-
Confidence            9999999999999999999999999 67777788999999999999999889999999974210    0000  00000 


Q ss_pred             hhhcCCCCCCCccccccCCCCCccccCCCcccccccHHHHhccHHHHHHHHHHHHHHHHHHHHH----H-hHHhhcc-CC
Q 039541          282 ASRSNYQSDYGLESCCLSNMPPKAKNVIPKLDLYSSLKDLFNRKWALRRLLTIMALAFGIGVVY----F-GLLLGVG-NL  355 (521)
Q Consensus       282 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~----~-~~~~~~~-~~  355 (521)
                                         ...........   ...++...+ .+-.+..+......+.....-    . ..++++. .+
T Consensus       216 -------------------~~~~~~~~~~~---~~~~~~~~~-~~~~r~~l~l~l~~~~~~~~~~~~~~~~~~~yl~~~f  272 (463)
T KOG2816|consen  216 -------------------LTPGSLDSSHV---ADAFQSLTK-VGPDRLLLLLLLVAFLSSLPEAGGASDVLLLYLKAKF  272 (463)
T ss_pred             -------------------cCCCcccchhh---hhhhhhhcc-cCCCccchHHHHHHHHHHHHHhcCceeEEEEEEeeec
Confidence                               00000000000   001111111 100111121111111111111    0 1122222 23


Q ss_pred             CccHHH---HHHHHHHHhHhHHHHHH-HHHhhcCCchHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHH
Q 039541          356 SFNIYL---SLAFNGLLDIPAYLLTF-ILIERWSRKSSILTFCILSGTCSAICVAIGDEQEVLQIGLELASFFSACVAFN  431 (521)
Q Consensus       356 ~~~~~~---~~~~~~~~~~~~~~~~g-~l~dr~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  431 (521)
                      +.+...   .....+....++.++.. .+...++.|++...|.....+....+.+....  |..+ ...+.........+
T Consensus       273 ~w~~~~~s~~~~~~~~~~~i~~l~~~~~l~~~l~~~~~i~lGl~~~~~~~~~~af~~~~--w~~~-~~~v~~~~~~~~~p  349 (463)
T KOG2816|consen  273 GWNKKEFSDLLSLVSILGIISQLLLLPLLSSILGEKRLISLGLLSEFLQLLLFAFATET--WMMF-AAGVVVALAGIVFP  349 (463)
T ss_pred             CcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhhHHHHHHHHHHHHHHHhccc--hhhh-HHHHHHHhhcchhH
Confidence            444332   23344455555665554 77888898898899999889988888887665  3433 33344445567778


Q ss_pred             HHHHhhccccCchhhhhhhHHHHHhhhhhhhHHHHHHHh
Q 039541          432 VLLVFGTELFTTCVRNSTTSLVRQAVNLGAAFSPVLISA  470 (521)
Q Consensus       432 ~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~p~~~~~  470 (521)
                      ...+..+...+++.+|++.++...+..+.+.++|.+.+.
T Consensus       350 a~~s~~s~~v~~~e~g~v~~~is~i~~l~~~~~~~~~~~  388 (463)
T KOG2816|consen  350 AIRAFASILVSPEEQGKVFGIISGIEGLSGVVSPALYGN  388 (463)
T ss_pred             HHHhHHHhhcccccccchhhHHHHHHHHhhhhhHHHHHH
Confidence            889999999999999999999999999999999998863

>PRK09528 lacY galactoside permease; Reviewed

Probab=99.48  E-value=1.2e-13  Score=137.15  Aligned_cols=142  Identities=15%  Similarity=0.110  Sum_probs=123.8

Q ss_pred             chhhHHHHHHHHHHhhhhhhhccccCCCCchHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHhhccchhhHhhhhhhee
Q 039541          119 SGLPSSCFFIGCLLGGLALSTLGDSSSLGRKKLLFLSCFAMSITALATIFANNIWIYSTIRFVAGFFRAPIMTSVIVLLS  198 (521)
Q Consensus       119 ~~~~~s~~~lg~~i~~~~~g~l~dr~~~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~  198 (521)
                      .|++.++..++..++.+++|++.||  +|||+.+..+.++.+++.++.+++++.+.+++.+++.|++.+...+....++.
T Consensus       264 ~g~~~~~~~~~~~~~~~~~g~l~dr--~g~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~  341 (420)
T PRK09528        264 FGYLNSFQVFLEALIMFFAPFIINR--IGAKNALLLAGTIMAVRIIGSGFATGPLEVSILKLLHAFEVPFLLVGVFKYIT  341 (420)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH--hCcchhhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4899999999999999999999999  99999999999999999999999999999999999999999888888889999


Q ss_pred             eeecCcchhHHHHH-HHHHHHHHHHHHHHH-HHhhcCCchhHHHHHHHHHHHHHHhhhceeeecch
Q 039541          199 EMVSKRWRGQVVII-GFTFFSFGLVSLPAV-AYLSRGSSWKMLYVWTSIPSIVCCIIIYPFISESP  262 (521)
Q Consensus       199 ~~~~~~~rg~~~~~-~~~~~~~G~~i~~~i-~~~~~~~~wr~~f~~~~~~~~~~~~~~~~~~~esp  262 (521)
                      |.+|++.|+...+. ++....+|.++++.+ |++.+..||+..|.+.+++.++..++.++.+++.|
T Consensus       342 ~~~~~~~~a~~~~~~~~~~~~lg~~ig~~~~G~l~~~~G~~~~f~~~~~~~~i~~~~~~~~~~~~~  407 (420)
T PRK09528        342 LNFDVRLSATIYLVGFQFAKQLGAVFLSTLAGNLYDSIGFQGTYLILGGIVLLFTLISVFTLSGDR  407 (420)
T ss_pred             HHcCccceeeeeeehHHHHHHHHHHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHHHHHHHhcCCc
Confidence            99999999887655 677788999999888 88888889999999988887776645555555543

>TIGR01299 synapt_SV2 synaptic vesicle protein SV2

Probab=99.47  E-value=2.4e-13  Score=140.55  Aligned_cols=139  Identities=13%  Similarity=0.034  Sum_probs=120.9

Q ss_pred             hhhHHHHHHHHHHhhhhhhhccccCCCCchHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHhhccchhhHhhhhhheee
Q 039541          120 GLPSSCFFIGCLLGGLALSTLGDSSSLGRKKLLFLSCFAMSITALATIFANNIWIYSTIRFVAGFFRAPIMTSVIVLLSE  199 (521)
Q Consensus       120 ~~~~s~~~lg~~i~~~~~g~l~dr~~~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~  199 (521)
                      .+...+..++.+++.++.|+++||  +|||+++++++++.++++++.+++++...+++.+++.|++.++.++...++++|
T Consensus       598 ~~~~~l~~l~~i~G~il~g~L~Dr--~GRr~~l~~~~~lsai~~ll~~~~~s~~~ll~~~~l~g~~~~~~~~~~~a~~aE  675 (742)
T TIGR01299       598 YFVNFLGTLAVLPGNIVSALLMDK--IGRLRMLAGSMVLSCISCFFLSFGNSESAMIALLCLFGGLSIAAWNALDVLTVE  675 (742)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH--hCCHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            455667778999999999999999  999999999999999999999999998888999999999888899999999999


Q ss_pred             eecCcchhHHHHHHHHHHHHHHHHHHHHH-HhhcCCchhHHHHHHHHHHHHHHhhhceeeecch
Q 039541          200 MVSKRWRGQVVIIGFTFFSFGLVSLPAVA-YLSRGSSWKMLYVWTSIPSIVCCIIIYPFISESP  262 (521)
Q Consensus       200 ~~~~~~rg~~~~~~~~~~~~G~~i~~~i~-~~~~~~~wr~~f~~~~~~~~~~~~~~~~~~~esp  262 (521)
                      ++|.++|++++|+..+...+|.+++|+++ .+.. .+...+|++.+++.++.. ++.+++||+.
T Consensus       676 l~Pt~~Rgta~Gi~~~~~rlGaiigp~i~g~L~~-~~~~~pf~i~a~~lll~~-ll~~~LPET~  737 (742)
T TIGR01299       676 LYPSDKRATAFGFLNALCKAAAVLGILIFGSFVG-ITKAAPILFASAALACGG-LLALKLPDTR  737 (742)
T ss_pred             HcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hhhHHHHHHHHHHHHHHH-HHHHhCCCCc
Confidence            99999999999999999999999999994 4544 345678888877777766 4555678874

This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by pfam model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices.

>PF03092 BT1: BT1 family; InterPro: IPR004324 Members of this family are transmembrane proteins

Probab=99.47  E-value=2.8e-12  Score=126.31  Aligned_cols=369  Identities=15%  Similarity=0.120  Sum_probs=218.2

Q ss_pred             CcceeeecceeeCCccccchhhHHHHHHHHHHhhhhhhhccccC---CCCchHHHHHHHHHHHHHHHHHhcc----ccHH
Q 039541          101 DTTIISDWSLECAGSSILSGLPSSCFFIGCLLGGLALSTLGDSS---SLGRKKLLFLSCFAMSITALATIFA----NNIW  173 (521)
Q Consensus       101 ~~~i~~~~~~~~~~~~~~~~~~~s~~~lg~~i~~~~~g~l~dr~---~~Grr~~l~~~~~~~~~~~~~~~~~----~~~~  173 (521)
                      .|.+++++|+++++.    ....+...+...+ -++.|.++|.-   .+.||+-++++.++..++.+..+..    .+..
T Consensus        13 ~~~l~~~l~ls~~~~----~~~~~~~~lPw~~-Kp~~g~lsD~~pi~G~rr~~Y~~i~~~~~~~~~~~~~~~~~~~~s~~   87 (433)
T PF03092_consen   13 YPFLKDDLGLSPAQL----QRLSSLASLPWSI-KPLYGLLSDSFPIFGYRRKPYMIIGWLLGAVSALVLALLPASESSAA   87 (433)
T ss_pred             HHHHHHHcCCCHHHH----HHHHHHHhCchHH-hhhHHhhcccccccCCcchHHHHHHHHHHHHHHHHHHhcccccchhh
Confidence            567889999999666    6666666666654 47899999982   1236666677777776666655543    3566


Q ss_pred             HHHHHHHHhhccchhhHhhhhhheeeeec--CcchhHHHHHHHHHHHHHHHHHHHH-HHhhcCCchhHHHHHHHHHHHHH
Q 039541          174 IYSTIRFVAGFFRAPIMTSVIVLLSEMVS--KRWRGQVVIIGFTFFSFGLVSLPAV-AYLSRGSSWKMLYVWTSIPSIVC  250 (521)
Q Consensus       174 ~l~~~r~l~G~~~g~~~~~~~~~i~~~~~--~~~rg~~~~~~~~~~~~G~~i~~~i-~~~~~~~~wr~~f~~~~~~~~~~  250 (521)
                      ...+.-++..+|......+.-+++.|...  ++.||...+.......+|.+++..+ |.+.+..++|..|.+.+++.++.
T Consensus        88 ~~~~~l~la~~g~a~~DV~aDa~vvE~~~~~p~~~g~lqS~~~~~~~~G~lv~~~l~G~l~~~~~~~~~f~i~~~~~~l~  167 (433)
T PF03092_consen   88 IAVVLLFLASFGYAFADVAADALVVELARREPESRGDLQSFVWGVRSVGSLVGSLLSGPLLDSFGPQGVFLISAALPLLM  167 (433)
T ss_pred             hHHHHHHHHHHHHHHHHHhhhHHHHHHhhcCCchhHHHHHHHHHHHHHHHHHHHHhhhhhhhcCCCeEEehHHHHHHHHH
Confidence            77777788899999999999999999883  3447888888888899999999888 78888889999999988887777


Q ss_pred             HhhhceeeecchhHHHhcCCHHHHHHHHHHHhhhcCCCCCCCccccccCCCCCccccCCCcccccccHHHHhccHHHHHH
Q 039541          251 CIIIYPFISESPRWLFIHGHEAEAMAVLKRLASRSNYQSDYGLESCCLSNMPPKAKNVIPKLDLYSSLKDLFNRKWALRR  330 (521)
Q Consensus       251 ~~~~~~~~~esp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~  330 (521)
                      .+...+..+|.++     ...++...    .   .+.               ........-++.....++.++.+..+..
T Consensus       168 ~~~~~~~~~e~~~-----~~~~~~~~----~---~~~---------------~~~~~~~~~~~~~~~l~~~~~~~~i~~~  220 (433)
T PF03092_consen  168 LIVALFLLEERKV-----RPADEVFS----F---GKE---------------EVPCLFGSFREQLSELWRALQQRAIWQP  220 (433)
T ss_pred             HHHHHHhhhhccc-----cccchhhc----c---ccc---------------ccchhhHHHHHHHHHHHHHHhhhHHHHH
Confidence            6455555554211     00000000    0   000               0000000001111356677777776665


Q ss_pred             HH-HHHHHHHHHHH----HHHhHHhhccCCCccHHHHH---HHHHHHhHhHHHHHHHHHhhcCCchHHHHHHHHHHHHHH
Q 039541          331 LL-TIMALAFGIGV----VYFGLLLGVGNLSFNIYLSL---AFNGLLDIPAYLLTFILIERWSRKSSILTFCILSGTCSA  402 (521)
Q Consensus       331 ~~-~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~i~~~  402 (521)
                      .+ ..++..+....    .+|.........+.+.....   .+..++.++|..+......+..-|+++....++..+..+
T Consensus       221 ~~~~~~~~~~~~~~~~a~~fy~~~~~~~gp~fs~~f~~~~~~vg~~~~l~g~~~y~~~~~~~~~R~~~~~t~~~~~~~~l  300 (433)
T PF03092_consen  221 ILFFIFFFNLPPSISSASSFYFQTDALGGPHFSPSFYGTLSIVGSIASLLGILLYRKYFSNWSWRRIFVVTTLVSVLASL  300 (433)
T ss_pred             HHHHHHHHHhccCCCCccEEEEEeccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhc
Confidence            55 22221111100    11111111111113433322   334445555555555555556666776666665554433


Q ss_pred             HHHhc-CCch-------HHHHHHHHHHHHHHHHHHHHHHHHhhccccCchhhhhhhHHHHHhhhhhhhHHHHHHHh----
Q 039541          403 ICVAI-GDEQ-------EVLQIGLELASFFSACVAFNVLLVFGTELFTTCVRNSTTSLVRQAVNLGAAFSPVLISA----  470 (521)
Q Consensus       403 ~~~~~-~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~p~~~~~----  470 (521)
                      .-... ...+       .+....-.++..+.....+-....+++|+.|+..-|+.+++...+.++|..++..+...    
T Consensus       301 ~~~~lv~~~n~~~Gi~d~~f~lgd~~l~~~~~~i~~mP~lvl~a~lcP~G~Egt~yall~s~~Nlg~~~s~~lg~~l~~~  380 (433)
T PF03092_consen  301 FDLLLVTRWNLDLGIPDQWFALGDTILEEVIGMIAFMPSLVLAARLCPKGSEGTVYALLASFSNLGSSVSSTLGAFLMEL  380 (433)
T ss_pred             ccEEEEEEEeeeeCcCCeEEEEEhHHHHHHHHHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            22111 1110       02223344555566666667778889999999999999999999999988877766642    


Q ss_pred             ---hc---cchhHHHHHHHHHHHHHhHhhhccccCCC
Q 039541          471 ---GR---QNEFLSFGVFGLVVFCFGFFVVFLPETIG  501 (521)
Q Consensus       471 ---~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  501 (521)
                         ..   .+.....++..++.++...+..++|+.++
T Consensus       381 ~~vt~~~f~~l~~lili~~~~~ll~l~ll~lLp~~~~  417 (433)
T PF03092_consen  381 FGVTRDDFSNLWLLILICSVIQLLPLPLLFLLPPQKR  417 (433)
T ss_pred             cCCCcccccchHHHHHHHHHHHHHHHHHHHHcCCCch
Confidence               11   12334444455555555555556665443

Several are Leishmania putative proteins that are thought to be pteridine transporters [, ]. This family also contains five putative Arabidopsis thaliana proteins of unknown function as well as two predicted prokaryotic proteins (from the cyanobacteria Synechocystis and Synechococcus).

>TIGR00889 2A0110 nucleoside transporter

Probab=99.44  E-value=3.5e-13  Score=132.99  Aligned_cols=142  Identities=13%  Similarity=0.073  Sum_probs=123.8

Q ss_pred             chhhHHHHHHHHHHhhhhhhhccccCCCCchHHHHHHHHHHHHHHHHHhccc----cHHHHHHHHHHhhccchhhHhhhh
Q 039541          119 SGLPSSCFFIGCLLGGLALSTLGDSSSLGRKKLLFLSCFAMSITALATIFAN----NIWIYSTIRFVAGFFRAPIMTSVI  194 (521)
Q Consensus       119 ~~~~~s~~~lg~~i~~~~~g~l~dr~~~Grr~~l~~~~~~~~~~~~~~~~~~----~~~~l~~~r~l~G~~~g~~~~~~~  194 (521)
                      .+...++..++..++.++.|+++||  +|||+++.++.++.+++..+.....    +++.+++.+++.|++.+...+...
T Consensus       253 ~g~~~~~~~i~~i~~~~~~g~l~dr--~g~r~~l~~~~~~~~v~~~l~~~~~~~~~~~~~l~l~~~l~g~~~~~~~~~~~  330 (418)
T TIGR00889       253 ASIWMSLSQFSEIFFILTIPFFLKR--FGIKKVMLLSLVAWALRFGFFAYGDPEYFGYALLFLSMIVYGCAFDFFNISGS  330 (418)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH--hCcHHHHHHHHHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4899999999999999999999999  9999999999999998877776642    346778889999999998889999


Q ss_pred             hheeeeecCcchhHHHHHHH-HHHHHHHHHHHHH-HHhhcC------CchhHHHHHHHHHHHHHHhhhceeeecch
Q 039541          195 VLLSEMVSKRWRGQVVIIGF-TFFSFGLVSLPAV-AYLSRG------SSWKMLYVWTSIPSIVCCIIIYPFISESP  262 (521)
Q Consensus       195 ~~i~~~~~~~~rg~~~~~~~-~~~~~G~~i~~~i-~~~~~~------~~wr~~f~~~~~~~~~~~~~~~~~~~esp  262 (521)
                      .++.|++|+++|++++++.+ ...++|.++||.+ |.+.+.      +||+..|.+.+++.++..++.++++||+.
T Consensus       331 ~~i~~~~p~~~~g~~~g~~~~~~~~lg~~iGp~l~G~l~~~~g~~~~~~~~~~f~~~~~~~~i~~~l~~~~~~~~~  406 (418)
T TIGR00889       331 VFVEKEVPVHIRASAQGLFTLMCNGFGSLLGYILSGVMVEKMFAYGTFDWQTMWLFFAGYIAILAVLFMIFFKYSH  406 (418)
T ss_pred             HHHHHHCCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhccccCCchHHHHHHHHHHHHHHHHHHHHHhCCcc
Confidence            99999999999999999997 6788999999999 666654      57999999998888888878888888764

This family of proteins transports nucleosides at a high affinity. The transport mechanism is driven by proton motive force. This family includes nucleoside permease NupG and xanthosine permease from E.Coli.

>PF01770 Folate_carrier: Reduced folate carrier; InterPro: IPR002666 The reduced folate carrier (a transmembrane glycoprotein) transports reduced folate into mammalian cells via the carrier mediated mechanism (as opposed to the receptor mediated mechanism) it also transports cytotoxic folate analogues used in chemotherapy [], such as methotrexate (MTX)

Probab=99.41  E-value=6.5e-11  Score=112.04  Aligned_cols=344  Identities=14%  Similarity=0.036  Sum_probs=208.0

Q ss_pred             Ccceeee-cceeeCCccccchhhHHHHHHHHHHhhhhhhhccccCCCCchHHHHHHHHHHHHHHHHHhccccHHHHHHHH
Q 039541          101 DTTIISD-WSLECAGSSILSGLPSSCFFIGCLLGGLALSTLGDSSSLGRKKLLFLSCFAMSITALATIFANNIWIYSTIR  179 (521)
Q Consensus       101 ~~~i~~~-~~~~~~~~~~~~~~~~s~~~lg~~i~~~~~g~l~dr~~~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r  179 (521)
                      .|.+.+. .|++.+|.   ..-+.-...-.+....++...+.|.  .|.|++++++.+...+..++..+.++...+-+..
T Consensus        27 ~~yL~~~~kn~T~~qv---~~~i~Pv~tYSyl~~l~~vflltd~--l~Ykpviil~~~~~i~t~~lll~~~sv~~mq~~q  101 (412)
T PF01770_consen   27 TPYLTGPDKNFTEEQV---NNEIYPVWTYSYLAFLLPVFLLTDY--LRYKPVIILQALSYIITWLLLLFGTSVLAMQLMQ  101 (412)
T ss_pred             hHHHcCCccCCCHHHH---HHhhhhHHHHHHHHHHHHHHHHHHH--hhhhHHHHHHHHHHHHHHHHHHHHCcHHHHHHHH
Confidence            4555554 77877665   2445556666777888899999999  9999999999999999999999999999999999


Q ss_pred             HHhhccchhhHhhhhhheeeeecCcchhHHHHHHHHHHHHHHHHHHHHHHhh---cCCchhHHHHHHHHHHHHHHhhhce
Q 039541          180 FVAGFFRAPIMTSVIVLLSEMVSKRWRGQVVIIGFTFFSFGLVSLPAVAYLS---RGSSWKMLYVWTSIPSIVCCIIIYP  256 (521)
Q Consensus       180 ~l~G~~~g~~~~~~~~~i~~~~~~~~rg~~~~~~~~~~~~G~~i~~~i~~~~---~~~~wr~~f~~~~~~~~~~~~~~~~  256 (521)
                      ++.|++.+ ...+.++|+-...|+++--++.+...++..+|..++.++|-++   ...+.+...++......+.+ +..+
T Consensus       102 ~~yg~~~a-~evay~sYiys~v~~~~yq~vts~~raa~l~g~~~s~~lgQllvs~~~~sy~~L~~isl~~~~~a~-~~~~  179 (412)
T PF01770_consen  102 FFYGLATA-AEVAYYSYIYSVVDKEHYQKVTSYTRAATLVGRFISSLLGQLLVSFGGVSYFQLNYISLASVSLAL-LIAL  179 (412)
T ss_pred             HHHHHHHH-HHHHHHHHheeecCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHH-HHHH
Confidence            99999987 5788889999999999999999999999999999998887544   34456666666655555544 5556


Q ss_pred             eeecchhHHHhcCCHHHHHHHHHHHhhhcCCCCCCCccccccCCCCCccccCCCc----ccccccHHHHhccHHHHHHHH
Q 039541          257 FISESPRWLFIHGHEAEAMAVLKRLASRSNYQSDYGLESCCLSNMPPKAKNVIPK----LDLYSSLKDLFNRKWALRRLL  332 (521)
Q Consensus       257 ~~~esp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~l~~~~~~~~~~~  332 (521)
                      ++|..++...-+++.++... ..+    .+.+...+..+...+..+.+.......    ......+++..++|.+++..+
T Consensus       180 fLP~~~~S~~f~r~~~~~~~-~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~y~~~~ll~WSl  254 (412)
T PF01770_consen  180 FLPMPKRSLFFHRKPPAEQD-ANE----SESDKMNESPESSSSTEKSPSTESSSRKSVLRLLWKDFKSCYSNPRLLLWSL  254 (412)
T ss_pred             HcCCCCcccceeccCccccc-ccc----ccccccccccccccccccCcccccchHHHHHHHHHHHHHHHhcCchHHHHHH
Confidence            77776543322221111000 000    000000000000000000000000000    011235566677777665555


Q ss_pred             HHHHHHHHHHH-HHHhHHhhccC--CCccH---HHHHHHHHHHhHhHHHHHHHHHhhcCCchHHHH--HHHHHHHHHHHH
Q 039541          333 TIMALAFGIGV-VYFGLLLGVGN--LSFNI---YLSLAFNGLLDIPAYLLTFILIERWSRKSSILT--FCILSGTCSAIC  404 (521)
Q Consensus       333 ~~~~~~~~~~~-~~~~~~~~~~~--~~~~~---~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~--~~~~~~i~~~~~  404 (521)
                      -..+...+... ..|...++-..  .....   +..-....+.+.++.+..|++..++.+...+.+  ..++.+..++++
T Consensus       255 WWa~atcgy~qv~nYvQ~LW~~v~~~~~~~vYNG~VeA~~tllgA~~al~~g~v~~~w~~~~~l~l~~~S~l~a~~L~lm  334 (412)
T PF01770_consen  255 WWAFATCGYYQVINYVQSLWDTVPPSDNESVYNGAVEAASTLLGAIAALLAGYVKVNWDRWGELALGVFSLLQAGLLFLM  334 (412)
T ss_pred             HHHHHHhHHHHHHHHHHHHHHhcCCCCCCcccchHHHHHHHHHHHHHHHHHhHhhcchHHHHHHHHHHHHHHHHHHHHHH
Confidence            44444444433 33333333222  11111   222233445555677778888666665443333  333444444444


Q ss_pred             HhcCCchHHHHHHHHHHHHHHHHHHHHHHHHhhccccCchhhhhhhHHHHHhhh
Q 039541          405 VAIGDEQEVLQIGLELASFFSACVAFNVLLVFGTELFTTCVRNSTTSLVRQAVN  458 (521)
Q Consensus       405 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~  458 (521)
                      ....+.  |..++..++++.......++...-++.....+.-|...|+.++...
T Consensus       335 ~~t~~I--wv~Y~~yIif~~~y~fliTiA~~qIA~~l~~e~yaLVFGiNtf~Al  386 (412)
T PF01770_consen  335 SFTGNI--WVCYAGYIIFRSLYMFLITIASFQIAKNLSEERYALVFGINTFVAL  386 (412)
T ss_pred             HHhhHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHhccccceeeeeeeHHHHHH
Confidence            443333  7777888888877777777776666666666666777777766553

Mammalian cells have an absolute requirement for exogenous folates which are needed for growth, and biosynthesis of macromolecules [].; GO: 0005542 folic acid binding, 0008518 reduced folate carrier activity, 0006810 transport, 0016020 membrane

>PRK15011 sugar efflux transporter B; Provisional

Probab=99.41  E-value=2.2e-12  Score=126.69  Aligned_cols=150  Identities=10%  Similarity=0.078  Sum_probs=123.4

Q ss_pred             ceeeecceeeCCccccchhhHHHHHHHHHHhhhhhhhccccCCCCchHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHh
Q 039541          103 TIISDWSLECAGSSILSGLPSSCFFIGCLLGGLALSTLGDSSSLGRKKLLFLSCFAMSITALATIFANNIWIYSTIRFVA  182 (521)
Q Consensus       103 ~i~~~~~~~~~~~~~~~~~~~s~~~lg~~i~~~~~g~l~dr~~~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~  182 (521)
                      .+++++|++..+.    +++.+...++..++.++.|+++||  +|||+.+..+.....+......++++.+.+++.+++.
T Consensus       242 ~l~~~~~~~~~~~----g~~~~~~~~~~i~~~~~~G~l~dr--~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~  315 (393)
T PRK15011        242 FIINELHLPEKLA----GVMMGTAAGLEIPTMLIAGYFAKR--LGKRFLMRVAAVAGVCFYAGMLMAHSPAILLGLQLLN  315 (393)
T ss_pred             HHHHHcCCCHHHH----HHHHHHHHHHHHHHHHHHHHHHHH--hChHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence            3456788887665    888888788888899999999999  9999988887776666655566678888888999999


Q ss_pred             hccchhhHhhhhhheeeeecCcchhHHHHHHHHHHHHHHHHHHHH-HHhhcCCchhHHHHHHHHHHHHHHhhhceeeec
Q 039541          183 GFFRAPIMTSVIVLLSEMVSKRWRGQVVIIGFTFFSFGLVSLPAV-AYLSRGSSWKMLYVWTSIPSIVCCIIIYPFISE  260 (521)
Q Consensus       183 G~~~g~~~~~~~~~i~~~~~~~~rg~~~~~~~~~~~~G~~i~~~i-~~~~~~~~wr~~f~~~~~~~~~~~~~~~~~~~e  260 (521)
                      +++.|...+....+..|.+|+ +|++++++++....+|..++|.+ +.+.+.++|+..|++.+++.++.+ +..+++||
T Consensus       316 ~~~~g~~~~~~~~~~~~~~p~-~~g~~~~~~~~~~~lg~~~g~~l~G~i~~~~g~~~~~~~~~~~~~~~~-~~~~~~~~  392 (393)
T PRK15011        316 AIYIGILGGIGMLYFQDLMPG-QAGSATTLYTNTSRVGWIIAGSLAGIVAEIWNYHAVFWFALVMIIATL-FCLLRIKD  392 (393)
T ss_pred             HHHHHHHHHHHHHHHHHhCCC-CcchHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH-HHHHhhcC
Confidence            988888777778888898884 69999999999999999999998 677777899999998888887777 55455554

>TIGR00890 2A0111 Oxalate/Formate Antiporter

Probab=99.39  E-value=1.5e-12  Score=127.42  Aligned_cols=144  Identities=13%  Similarity=0.009  Sum_probs=122.6

Q ss_pred             cceeeecceeeCCccccchhhHHHHHHHHHHhhhhhhhccccCCCCchHHHHHHHHHHHHHHHHHhccccH--HHHHHHH
Q 039541          102 TTIISDWSLECAGSSILSGLPSSCFFIGCLLGGLALSTLGDSSSLGRKKLLFLSCFAMSITALATIFANNI--WIYSTIR  179 (521)
Q Consensus       102 ~~i~~~~~~~~~~~~~~~~~~~s~~~lg~~i~~~~~g~l~dr~~~Grr~~l~~~~~~~~~~~~~~~~~~~~--~~l~~~r  179 (521)
                      +.+.++++.+.++.    +++.+.+.++..++.++.|+++||  +|||+.+.++.++.+++.++..+.++.  ..+++..
T Consensus       229 ~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~g~l~dr--~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  302 (377)
T TIGR00890       229 KPYGQSLGLSDGFL----VLAVSISSIFNGGGRPFLGALSDK--IGRQKTMSIVFGISAVGMAAMLFIPMLNDVLFLATV  302 (377)
T ss_pred             HHHHHHcCCCHHHH----HHHHHHHHHHHHHHHHHHHHHHHH--HhhhhhhhHHHHHHHHHHHHHHHcccchhHHHHHHH
Confidence            33446677776555    889999999999999999999999  999999999999999988888777643  3455667


Q ss_pred             HHhhccchhhHhhhhhheeeeecCcchhHHHHHHHHHHHHHHHHHHHH-HHhhcCCchhHHHHHHHHHHHHHH
Q 039541          180 FVAGFFRAPIMTSVIVLLSEMVSKRWRGQVVIIGFTFFSFGLVSLPAV-AYLSRGSSWKMLYVWTSIPSIVCC  251 (521)
Q Consensus       180 ~l~G~~~g~~~~~~~~~i~~~~~~~~rg~~~~~~~~~~~~G~~i~~~i-~~~~~~~~wr~~f~~~~~~~~~~~  251 (521)
                      ++.|++.+...+....++.|.+|+++|+++.++.+....+|..++|.+ +.+.+..||++.|++.+++.++..
T Consensus       303 ~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~f~~~~~~~~~~~  375 (377)
T TIGR00890       303 ALVFFTWGGTISLFPSLVSDIFGPANSAANYGFLYTAKAVAGIFGGLIASHALTEIGFEYTFIVTGAFALTSL  375 (377)
T ss_pred             HHHHHHhccchhccHHHHHHHhhhhhhhhHhHHHHHHHHHHHHHHHHHHHHHHhhhchhhHHHHHHHHHHHhc
Confidence            888988888888888899999999999999999999999999999988 778888899999999887776654

>cd06174 MFS The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters

Probab=99.36  E-value=3.5e-12  Score=123.36  Aligned_cols=147  Identities=22%  Similarity=0.296  Sum_probs=133.1

Q ss_pred             Ccceeee-cceeeCCccccchhhHHHHHHHHHHhhhhhhhccccCCCCchH-HHHHHHHHHHHHHHHHhccccHHHHHHH
Q 039541          101 DTTIISD-WSLECAGSSILSGLPSSCFFIGCLLGGLALSTLGDSSSLGRKK-LLFLSCFAMSITALATIFANNIWIYSTI  178 (521)
Q Consensus       101 ~~~i~~~-~~~~~~~~~~~~~~~~s~~~lg~~i~~~~~g~l~dr~~~Grr~-~l~~~~~~~~~~~~~~~~~~~~~~l~~~  178 (521)
                      .|.+.++ +|.+..+.    ++..+...++..++.++.|++.||  +|||+ .+..+..+..++.++..+.++.+.+++.
T Consensus       198 ~~~~~~~~~~~~~~~~----~~~~~~~~~~~~i~~~~~~~~~~~--~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~  271 (352)
T cd06174         198 LPLYLQEVLGLSAAEA----GLLLSLFGLGGILGALLGGLLSDR--LGRRRLLLLIGLLLAALGLLLLALAPSLALLLVA  271 (352)
T ss_pred             HHHHHHHhcCCCHHHH----HHHHHHHHHHHHHHHHHHHHHHHH--HHhhhHHHHHHHHHHHHHHHHHHHhccHHHHHHH
Confidence            3444444 47777555    999999999999999999999999  99999 9999999999999999999999999999


Q ss_pred             HHHhhccchhhHhhhhhheeeeecCcchhHHHHHHHHHHHHHHHHHHHH-HHhhcCCchhHHHHHHHHHHHHHHhh
Q 039541          179 RFVAGFFRAPIMTSVIVLLSEMVSKRWRGQVVIIGFTFFSFGLVSLPAV-AYLSRGSSWKMLYVWTSIPSIVCCII  253 (521)
Q Consensus       179 r~l~G~~~g~~~~~~~~~i~~~~~~~~rg~~~~~~~~~~~~G~~i~~~i-~~~~~~~~wr~~f~~~~~~~~~~~~~  253 (521)
                      .++.|++.+...+....++.|..|+++|++.+++.+....+|..+++.+ +.+.+..+|+..+++.+++.++..++
T Consensus       272 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~g~l~~~~~~~~~~~~~~~~~~i~~i~  347 (352)
T cd06174         272 LLLLGFGLGFAFPALLTLASELAPPEARGTASGLFNTFGSLGGALGPLLAGLLLDTGGYGGVFLILAALALLAALL  347 (352)
T ss_pred             HHHHHHHHhccchhHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCcchHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999999999998 77777889999999999988887733

MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3

>PRK11551 putative 3-hydroxyphenylpropionic transporter MhpT; Provisional

Probab=99.35  E-value=5.6e-12  Score=124.69  Aligned_cols=145  Identities=19%  Similarity=0.145  Sum_probs=122.1

Q ss_pred             CcceeeecceeeCCccccchhhHHHHHHHHHHhhhhhhhccccCCCCchHHHHHHHHHHHHHHHHHhccccHHHHHHHHH
Q 039541          101 DTTIISDWSLECAGSSILSGLPSSCFFIGCLLGGLALSTLGDSSSLGRKKLLFLSCFAMSITALATIFANNIWIYSTIRF  180 (521)
Q Consensus       101 ~~~i~~~~~~~~~~~~~~~~~~~s~~~lg~~i~~~~~g~l~dr~~~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~  180 (521)
                      .|.+.++.|.+..+.    +++.+.+.++..++.++.|+++||  +|||+.+..+.+..+++.++..+.++.+.+.+.-+
T Consensus       243 ~p~~~~~~g~s~~~~----~~~~~~~~~~~~~~~~~~g~l~dr--~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  316 (406)
T PRK11551        243 LPSLLVGQGLSRSQA----GLVQIAFNIGGALGSLLIGALMDR--LRPRRVVLLIYAGILASLAALAAAPSFAGMLLAGF  316 (406)
T ss_pred             HHHHHHhCCCChhhh----hHHHHHHHHHHHHHHHHHHHHHHH--HhHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHH
Confidence            355556678888666    999999999999999999999999  99999998887777777777777888888888889


Q ss_pred             HhhccchhhHhhhhhheeeeecCcchhHHHHHHHHHHHHHHHHHHHH-HHhhcCC-chhHHHHHHHHHHHHHH
Q 039541          181 VAGFFRAPIMTSVIVLLSEMVSKRWRGQVVIIGFTFFSFGLVSLPAV-AYLSRGS-SWKMLYVWTSIPSIVCC  251 (521)
Q Consensus       181 l~G~~~g~~~~~~~~~i~~~~~~~~rg~~~~~~~~~~~~G~~i~~~i-~~~~~~~-~wr~~f~~~~~~~~~~~  251 (521)
                      +.|++.+...+...+++.|.+|+++|+++.++.+....+|..++|.+ |.+.+.. +|...+++.+...++..
T Consensus       317 ~~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~g~~~~g~l~~~~~~~~~~~~~~~~~~~~~~  389 (406)
T PRK11551        317 AAGLFVVGGQSVLYALAPLFYPTQVRGTGVGAAVAVGRLGSMAGPLLAGQLLALGRSTVGVIGASIPVILVAA  389 (406)
T ss_pred             HHHHHHHhHHHHHHHHHHHHcchhhhhhhhhHHHHhhhHHHHHHhhhHhhhhccCCchHHHHHHHHHHHHHHH
Confidence            99998888888899999999999999999999999999999999998 6666653 56666666665555555

>PRK05122 major facilitator superfamily transporter; Provisional

Probab=99.35  E-value=9.6e-12  Score=122.69  Aligned_cols=135  Identities=13%  Similarity=0.163  Sum_probs=119.7

Q ss_pred             hhhHHHHHHHHHHhhhhhhhccccCCCCchHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHhhccchhhHhhhhhheee
Q 039541          120 GLPSSCFFIGCLLGGLALSTLGDSSSLGRKKLLFLSCFAMSITALATIFANNIWIYSTIRFVAGFFRAPIMTSVIVLLSE  199 (521)
Q Consensus       120 ~~~~s~~~lg~~i~~~~~g~l~dr~~~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~  199 (521)
                      ++..+.+.++..++.++.|++.||  +|||+.+..+..+.+++.++..+.++.+.+++.+++.|++.+...+.....+.|
T Consensus       252 ~~~~~~~~~~~~~~~~~~g~l~~r--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~~~~~~~~~~~~~~  329 (399)
T PRK05122        252 ALALTLFGVAFVGARLLFGNLINR--LGGLRVAIVSLLVEILGLLLLWLAPSPWMALIGAALTGFGFSLVFPALGVEAVK  329 (399)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHH--hccHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence            677788889999999999999999  999999999999999988888888999888999999999999888888888889


Q ss_pred             eecCcchhHHHHHHHHHHHHHHHHHHHH-HHhhcCCchhHHHHHHHHHHHHHHhhhce
Q 039541          200 MVSKRWRGQVVIIGFTFFSFGLVSLPAV-AYLSRGSSWKMLYVWTSIPSIVCCIIIYP  256 (521)
Q Consensus       200 ~~~~~~rg~~~~~~~~~~~~G~~i~~~i-~~~~~~~~wr~~f~~~~~~~~~~~~~~~~  256 (521)
                      ..|+++|+++.++++....+|..+++.+ +.+.+..||++.|++.++..++..++.++
T Consensus       330 ~~~~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~  387 (399)
T PRK05122        330 RVPPQNRGAALGAYSVFLDLSLGITGPLAGLVASWFGYPSIFLAAALAALLGLALTWL  387 (399)
T ss_pred             hCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999887776 88888889999999988887777644443

>PF05631 DUF791: Protein of unknown function (DUF791); InterPro: IPR008509 This family consists of several eukaryotic proteins of unknown function

Probab=99.35  E-value=9.2e-11  Score=107.94  Aligned_cols=149  Identities=16%  Similarity=0.156  Sum_probs=110.1

Q ss_pred             eecceeeCCccccchhhHHHHHHHHHHhhhhhhhccccCCCCchHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHhhcc
Q 039541          106 SDWSLECAGSSILSGLPSSCFFIGCLLGGLALSTLGDSSSLGRKKLLFLSCFAMSITALATIFANNIWIYSTIRFVAGFF  185 (521)
Q Consensus       106 ~~~~~~~~~~~~~~~~~~s~~~lg~~i~~~~~g~l~dr~~~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~  185 (521)
                      +++|.++.|.    +.+....+...++..++.|.++||  +|||+.-+.-.++++++++ +-..++++.++++|++.|++
T Consensus        62 ~~yg~~~~qI----a~Lf~~Gf~Ss~i~g~~~G~laD~--~Grk~~cl~~cily~~scl-~k~~~~~~~L~~GRvlgGia  134 (354)
T PF05631_consen   62 ESYGFSEHQI----AILFVAGFASSAIFGTFVGSLADR--YGRKKACLLFCILYSLSCL-TKHSSNYPVLLLGRVLGGIA  134 (354)
T ss_pred             HHcCCCHHHH----HHHHHHHHHHHHHHHHHHHHHHHh--cCchHHHHHHHHHHHHHHH-HHhccccHHHHHHHHHHHHH
Confidence            5799998666    999999999999999999999999  9999999999999999996 45668999999999999999


Q ss_pred             chhhHhhhhhhe-eeee----cCcchhHHHHHHH-HHHHHHHHHHHHHH-HhhcCCc--hhHHHHHHHHHHHHHHhhhce
Q 039541          186 RAPIMTSVIVLL-SEMV----SKRWRGQVVIIGF-TFFSFGLVSLPAVA-YLSRGSS--WKMLYVWTSIPSIVCCIIIYP  256 (521)
Q Consensus       186 ~g~~~~~~~~~i-~~~~----~~~~rg~~~~~~~-~~~~~G~~i~~~i~-~~~~~~~--wr~~f~~~~~~~~~~~~~~~~  256 (521)
                      .+..+.+--+++ .|.-    |++..+..++... ...++-.+++.+++ .+.+..+  -..+|....++.++..+++..
T Consensus       135 TSLLfS~FEsW~V~Eh~~~g~~~~~L~~tF~~~tf~~n~~vAI~aGv~a~~l~~~~~~g~vaPF~~a~~~l~~~~~~I~~  214 (354)
T PF05631_consen  135 TSLLFSAFESWMVHEHNKRGFPQEWLSDTFSLATFFGNGVVAIGAGVVANVLADWFGFGPVAPFDAAIVLLAVAAVLILK  214 (354)
T ss_pred             HHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHhHHHHHHHhHHHHHHHHHhCCCCcchHHHHHHHHHHHHHHHHh
Confidence            999999888864 4442    3333333333333 22233333444443 4444443  478898888888777756555


Q ss_pred             eeecc
Q 039541          257 FISES  261 (521)
Q Consensus       257 ~~~es  261 (521)
                      ..+|.
T Consensus       215 ~W~EN  219 (354)
T PF05631_consen  215 TWPEN  219 (354)
T ss_pred             ccccc
Confidence            56664

>PRK09874 drug efflux system protein MdtG; Provisional

Probab=99.35  E-value=3.2e-12  Score=126.57  Aligned_cols=137  Identities=20%  Similarity=0.296  Sum_probs=121.8

Q ss_pred             chhhHHHHHHHHHHhhhhhhhccccCCCCchHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHhhccchhhHhhhhhhee
Q 039541          119 SGLPSSCFFIGCLLGGLALSTLGDSSSLGRKKLLFLSCFAMSITALATIFANNIWIYSTIRFVAGFFRAPIMTSVIVLLS  198 (521)
Q Consensus       119 ~~~~~s~~~lg~~i~~~~~g~l~dr~~~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~  198 (521)
                      .+.+.+++.++..++.+..|+++||  +|||+.+..+.++.+++.+...+.++.+.+++.+++.|++.+...+...+++.
T Consensus       260 ~g~~~~~~~l~~~~~~~~~g~l~dr--~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~  337 (408)
T PRK09874        260 SGMIASVPGVAALLSAPRLGKLGDR--IGPEKILITALIFSVLLLIPMSFVQTPLQLGILRFLLGAADGALLPAVQTLLV  337 (408)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhc--cccchhHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhHhhHHHHHHHHH
Confidence            3667777888889999999999999  99999999999988888888888888999999999999999999999999999


Q ss_pred             eeecCcchhHHHHHHHHHHHHHHHHHHHH-HHhhcCCchhHHHHHHHHHHHHHHhhhcee
Q 039541          199 EMVSKRWRGQVVIIGFTFFSFGLVSLPAV-AYLSRGSSWKMLYVWTSIPSIVCCIIIYPF  257 (521)
Q Consensus       199 ~~~~~~~rg~~~~~~~~~~~~G~~i~~~i-~~~~~~~~wr~~f~~~~~~~~~~~~~~~~~  257 (521)
                      +..|+++||+.+++.+....+|..+||.+ |.+.+..||++.|++.+++.++..++.++.
T Consensus       338 ~~~~~~~~g~~~~~~~~~~~~g~~~gp~~~G~l~~~~g~~~~f~~~~~~~l~~~~~~~~~  397 (408)
T PRK09874        338 YNSSNQIAGRIFSYNQSFRDIGNVTGPLMGAAISANYGFRAVFLVTAGVVLFNAVYSWNS  397 (408)
T ss_pred             HhCCcccceeeehHHHHHHHHHHHhhHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999 677788899999999998888877454443

>PRK10489 enterobactin exporter EntS; Provisional

Probab=99.35  E-value=1.2e-11  Score=122.81  Aligned_cols=155  Identities=14%  Similarity=0.075  Sum_probs=133.2

Q ss_pred             cceeee-cceeeCCccccchhhHHHHHHHHHHhhhhhhhccccCCCCchHHHHHHHHHHHHHHHHHhccccHHHHHHHHH
Q 039541          102 TTIISD-WSLECAGSSILSGLPSSCFFIGCLLGGLALSTLGDSSSLGRKKLLFLSCFAMSITALATIFANNIWIYSTIRF  180 (521)
Q Consensus       102 ~~i~~~-~~~~~~~~~~~~~~~~s~~~lg~~i~~~~~g~l~dr~~~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~  180 (521)
                      |.+.++ +|.+..+.    |++.+...++..++.++.+++.||  .++++.+..+.++.+++.++..+.++.+.+.++.+
T Consensus       247 p~~~~~~~g~~~~~~----g~~~~~~~~g~~ig~~~~~~l~~~--~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  320 (417)
T PRK10489        247 PALADEVWQMGAAQI----GLLYAAVPLGAALGALTSGWLAHS--ARPGLLMLLSTLGSFLAVGLFGLMPMWILAVLCLA  320 (417)
T ss_pred             HHHHHhccCCChhHh----HHHHHHHHHHHHHHHHHHHHhhhc--cCcchHHHHHHHHHHHHHHHHHccchHHHHHHHHH
Confidence            444444 88887665    999999999999999999999999  99998998888888888888888899888888999


Q ss_pred             HhhccchhhHhhhhhheeeeecCcchhHHHHHHHHHHHHHHHHHHHH-HHhhcCCchhHHHHHHHHHHHHHHhhhceeee
Q 039541          181 VAGFFRAPIMTSVIVLLSEMVSKRWRGQVVIIGFTFFSFGLVSLPAV-AYLSRGSSWKMLYVWTSIPSIVCCIIIYPFIS  259 (521)
Q Consensus       181 l~G~~~g~~~~~~~~~i~~~~~~~~rg~~~~~~~~~~~~G~~i~~~i-~~~~~~~~wr~~f~~~~~~~~~~~~~~~~~~~  259 (521)
                      +.|++.+...+...+++.|..|++.||++++++.....+|..+||.+ |.+.+..|++..+++.+...++..++....+|
T Consensus       321 ~~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~g~~l~G~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~  400 (417)
T PRK10489        321 LFGYLSAISSLLQYTLLQTQTPDEMLGRINGLWTAQNVTGDAIGAALLGGLGAMMTPVASASASGFGLLIIGVLLLLVLG  400 (417)
T ss_pred             HHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHhhhHhHHHHHHHHHHHHhchhhHHHHHHHHHHHHHHHHHHhcc
Confidence            99999888888888999999999999999999999999999999998 78888889999998888777776656666666


Q ss_pred             cch
Q 039541          260 ESP  262 (521)
Q Consensus       260 esp  262 (521)
                      +.+
T Consensus       401 ~~~  403 (417)
T PRK10489        401 ELR  403 (417)
T ss_pred             ccc
Confidence            653

>TIGR00899 2A0120 sugar efflux transporter

Probab=99.33  E-value=1.4e-11  Score=120.41  Aligned_cols=148  Identities=16%  Similarity=0.171  Sum_probs=123.4

Q ss_pred             eeeecceeeCCccccchhhHHHHHHHHHHhhhhhhhccccCCCCchHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHhh
Q 039541          104 IISDWSLECAGSSILSGLPSSCFFIGCLLGGLALSTLGDSSSLGRKKLLFLSCFAMSITALATIFANNIWIYSTIRFVAG  183 (521)
Q Consensus       104 i~~~~~~~~~~~~~~~~~~~s~~~lg~~i~~~~~g~l~dr~~~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G  183 (521)
                      +.+++|.++.+.    +++.+...+...++.++.|++.||  +|||+++.++.++..+..+...+.++.+.+++.+++.|
T Consensus       226 ~~~~~g~~~~~~----g~~~~~~~~~~~~~~~~~g~l~~r--~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g  299 (375)
T TIGR00899       226 IIHELGLPDKLA----GLMMGTAAGLEIPFMLLAGYLIKR--FGKRRLMLLAALAGVAFYTGLAADNSLWALLMLQLLNA  299 (375)
T ss_pred             HHHHcCCCHHHH----HHHHHHHHHHHHHHHHhHHHHHHH--hcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            346778887655    888887777788889999999999  99999998888777766666667788888888999999


Q ss_pred             ccchhhHhhhhhheeeeecCcchhHHHHHHHHHHHHHHHHHHHH-HHhhcCCchhHHHHHHHHHHHHHHhhhceeee
Q 039541          184 FFRAPIMTSVIVLLSEMVSKRWRGQVVIIGFTFFSFGLVSLPAV-AYLSRGSSWKMLYVWTSIPSIVCCIIIYPFIS  259 (521)
Q Consensus       184 ~~~g~~~~~~~~~i~~~~~~~~rg~~~~~~~~~~~~G~~i~~~i-~~~~~~~~wr~~f~~~~~~~~~~~~~~~~~~~  259 (521)
                      ++.+...+....++.|..|+ +|++++++++....+|..++|.+ +.+.+..||+..|++.++..++.. +...+++
T Consensus       300 ~~~g~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~g~~~g~~~~g~~~~~~g~~~~~~~~~~~~~~~~-~~~~~~~  374 (375)
T TIGR00899       300 IFIGILAGIGMLYFQDLMPG-RAGAATTLYTNTGRVGWIIAGSVGGILAERWSYHAVYWFAIVMLIVAL-FCLLLIK  374 (375)
T ss_pred             HHHHHHHHHHHHHHHHhCcc-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHH-HHHheec
Confidence            99998888888899998875 56799999999999999999988 777788899999999888887777 4444444

This family of proteins is an efflux system for lactose, glucose, aromatic glucosides and galactosides, cellobiose, maltose, a-methyl glucoside and other sugar compounds. They are found in both gram-negative and gram-postitive bacteria.

>PRK12382 putative transporter; Provisional

Probab=99.31  E-value=1.7e-11  Score=120.62  Aligned_cols=136  Identities=15%  Similarity=0.149  Sum_probs=121.2

Q ss_pred             hhhHHHHHHHHHHhhhhhhhccccCCCCchHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHhhccchhhHhhhhhheee
Q 039541          120 GLPSSCFFIGCLLGGLALSTLGDSSSLGRKKLLFLSCFAMSITALATIFANNIWIYSTIRFVAGFFRAPIMTSVIVLLSE  199 (521)
Q Consensus       120 ~~~~s~~~lg~~i~~~~~g~l~dr~~~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~  199 (521)
                      ++..+.+.++..+++++.|++.||  +|+|+.+..+..+.+++.++..+.++.+.+++.+++.|++.+...+...+.+.|
T Consensus       252 ~~~~~~~~~~~~~~~~~~g~l~~r--~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~  329 (392)
T PRK12382        252 GFTLTAFGGAFVLMRVLFGWMPDR--FGGVKVAIVSLLVETVGLLLLWLAPTAWVALAGAALTGAGCSLIFPALGVEVVK  329 (392)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHh--cCCCeehHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence            666777888889999999999999  999999999999999998888888999888899999999999888888888899


Q ss_pred             eecCcchhHHHHHHHHHHHHHHHHHHHH-HHhhcCCchhHHHHHHHHHHHHHHhhhcee
Q 039541          200 MVSKRWRGQVVIIGFTFFSFGLVSLPAV-AYLSRGSSWKMLYVWTSIPSIVCCIIIYPF  257 (521)
Q Consensus       200 ~~~~~~rg~~~~~~~~~~~~G~~i~~~i-~~~~~~~~wr~~f~~~~~~~~~~~~~~~~~  257 (521)
                      .+|+++||++.++.+....+|..++|.+ +.+.+..||+..|.+.+++.++..++.++.
T Consensus       330 ~~~~~~~g~~~g~~~~~~~~g~~ig~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~  388 (392)
T PRK12382        330 RVPSQVRGTALGGYAAFQDIAYGVSGPLAGMLATSFGYPSVFLAGAISAVLGIIVTILS  388 (392)
T ss_pred             hcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHhh
Confidence            9999999999999999999999999988 788888899999999988887777444433

>PRK03545 putative arabinose transporter; Provisional

Probab=99.30  E-value=4.9e-11  Score=117.20  Aligned_cols=150  Identities=13%  Similarity=0.048  Sum_probs=120.6

Q ss_pred             cceeeecceeeCCccccchhhHHHHHHHHHHhhhhhhhccccCCCCchHHHHHHHHHHHHHH-HHHhccccHHHHHHHHH
Q 039541          102 TTIISDWSLECAGSSILSGLPSSCFFIGCLLGGLALSTLGDSSSLGRKKLLFLSCFAMSITA-LATIFANNIWIYSTIRF  180 (521)
Q Consensus       102 ~~i~~~~~~~~~~~~~~~~~~~s~~~lg~~i~~~~~g~l~dr~~~Grr~~l~~~~~~~~~~~-~~~~~~~~~~~l~~~r~  180 (521)
                      |.+.+++|.+.++.    +++.+...++..+++++.|+++||  +|||+... +..+..++. ++....++.+.+++..+
T Consensus       230 ~~l~~~~g~s~~~~----~~~~~~~~~~~~~g~~~~g~l~dr--~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~~~~  302 (390)
T PRK03545        230 PFVQQVAGLSENFA----TLLLLLFGGAGIIGSVLFSRLGNR--HPSGFLLI-AIALLLVCLLLLLPAANSEWHLSVLSI  302 (390)
T ss_pred             HHHHHhcCCCccHH----HHHHHHHHHHHHHHHHHHHHHhhc--cchhHHHH-HHHHHHHHHHHHHHHhchHHHHHHHHH
Confidence            34556678887666    999999999999999999999999  99887544 444444443 34456678888888999


Q ss_pred             HhhccchhhHhhhhhheeeeecCcchhHHHHHHHHHHHHHHHHHHHH-HHhhcCCchhHHHHHHHHHHHHHHhhhceeee
Q 039541          181 VAGFFRAPIMTSVIVLLSEMVSKRWRGQVVIIGFTFFSFGLVSLPAV-AYLSRGSSWKMLYVWTSIPSIVCCIIIYPFIS  259 (521)
Q Consensus       181 l~G~~~g~~~~~~~~~i~~~~~~~~rg~~~~~~~~~~~~G~~i~~~i-~~~~~~~~wr~~f~~~~~~~~~~~~~~~~~~~  259 (521)
                      +.|++.+...+...+.+.+..| ++|++++++++....+|..+||++ |.+.+..|++..|++.+++.++..+..+...+
T Consensus       303 l~g~~~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~g~~~G~~~~G~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~  381 (390)
T PRK03545        303 FWGIAIMCIGLAMQVKVLKLAP-DATDVAMALFSGIFNIGIGAGALLGNQVSLHLGLSSIGYVGAALALAALVWSILIFR  381 (390)
T ss_pred             HHHHHHhcchHHHHHHHHHhCC-CcHHHHHHHHHHHHHHHHHHHHHHHHHHHhccChhHHHHHHHHHHHHHHHHHHHHcc
Confidence            9999887777777788888766 689999999999999999999999 78889999999999999888887755555443

>TIGR00892 2A0113 monocarboxylate transporter 1

Probab=99.30  E-value=1.1e-11  Score=124.06  Aligned_cols=144  Identities=8%  Similarity=0.015  Sum_probs=118.3

Q ss_pred             cceeeecceeeCCccccchhhHHHHHHHHHHhhhhhhhccccCCCC--chHHHH--HHHHHHHHHHHHHhccccHHHHHH
Q 039541          102 TTIISDWSLECAGSSILSGLPSSCFFIGCLLGGLALSTLGDSSSLG--RKKLLF--LSCFAMSITALATIFANNIWIYST  177 (521)
Q Consensus       102 ~~i~~~~~~~~~~~~~~~~~~~s~~~lg~~i~~~~~g~l~dr~~~G--rr~~l~--~~~~~~~~~~~~~~~~~~~~~l~~  177 (521)
                      |.+.+++|.+..+.    +++.+...++..+++++.|+++||  .+  +|+...  .+.++.+++.++..++++++.+++
T Consensus       265 ~~~~~~~g~s~~~~----g~~~~~~~~~~~~~~~~~g~l~d~--~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~i  338 (455)
T TIGR00892       265 VPYAKDKGVDEYEA----AFLLSIIGFVDIFARPSCGLIAGL--KWIRPHVQYLFSFALLFNGLTHLLCALAGDYTGLVI  338 (455)
T ss_pred             HHHHHHcCCCHHHH----HHHHHHHHHHHHHHHHHHHHHhcc--cccCHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHH
Confidence            44456678888666    999999999999999999999997  53  343333  344444555666677889999999


Q ss_pred             HHHHhhccchhhHhhhhhheeeeecCcchhHHHHHHHHHHHHHHHHHHHH-HHhhcCC-chhHHHHHHHHHHHHHH
Q 039541          178 IRFVAGFFRAPIMTSVIVLLSEMVSKRWRGQVVIIGFTFFSFGLVSLPAV-AYLSRGS-SWKMLYVWTSIPSIVCC  251 (521)
Q Consensus       178 ~r~l~G~~~g~~~~~~~~~i~~~~~~~~rg~~~~~~~~~~~~G~~i~~~i-~~~~~~~-~wr~~f~~~~~~~~~~~  251 (521)
                      .+++.|++.+...+...+++.|.+|++++++++++++....+|.++||.+ |.+.+.. +|++.|++.+++.++..
T Consensus       339 ~~~~~G~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~igp~i~G~l~~~~g~~~~~f~~~~~~~li~~  414 (455)
T TIGR00892       339 YCIFFGLSFGSVGALLFEVLMDLVGAQRFSSAVGLVTIVECCAVLIGPPLAGRLVDATKNYKYIFYASGSIVVSAG  414 (455)
T ss_pred             HHHHHHHHhchHHHHHHHHHHHHhhHHHHhhHHhHHHHHHHHHHHccccceeeeehhcCCcchHHHHhhHHHHHHH
Confidence            99999999999999999999999999999999999999999999999998 6676666 59999999888766655

>TIGR00902 2A0127 phenyl proprionate permease family protein

Probab=99.28  E-value=4.7e-11  Score=116.84  Aligned_cols=140  Identities=8%  Similarity=-0.058  Sum_probs=124.6

Q ss_pred             eeeecceeeCCccccchhhHHHHHHHHHHhhhhhhhccccCCCCchHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHhh
Q 039541          104 IISDWSLECAGSSILSGLPSSCFFIGCLLGGLALSTLGDSSSLGRKKLLFLSCFAMSITALATIFANNIWIYSTIRFVAG  183 (521)
Q Consensus       104 i~~~~~~~~~~~~~~~~~~~s~~~lg~~i~~~~~g~l~dr~~~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G  183 (521)
                      ..+++|.+..+.    |++.+...++..++.++.+++.||  +|+|+.+.++.++.++..++.+++++.+.+++.++++|
T Consensus       231 ~l~~~g~s~~~~----g~l~~~~~~~~i~~~~~~~~l~~r--~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~q~l~g  304 (382)
T TIGR00902       231 YWQAAGISASAT----GLLWGIGVLAEIIIFAFSNKLFQN--CSARDLLLISAIACVGRWAIIGAIEAFPLIFLLQILHC  304 (382)
T ss_pred             HHHHCCCCHhHH----HHHHHHHHHHHHHHHHHhHHHHhh--CCHHHHHHHHHHHHHHHHHHHHhHhhHHHHHHHHHHHH
Confidence            335688888666    999999999999999999999999  99999999999999999999999999999999999999


Q ss_pred             ccchhhHhhhhhheeeeecCcchhHHHHHHH-HHHHHHHHHHHHH-HHhhcCCchhHHHHHHHHHHHHHH
Q 039541          184 FFRAPIMTSVIVLLSEMVSKRWRGQVVIIGF-TFFSFGLVSLPAV-AYLSRGSSWKMLYVWTSIPSIVCC  251 (521)
Q Consensus       184 ~~~g~~~~~~~~~i~~~~~~~~rg~~~~~~~-~~~~~G~~i~~~i-~~~~~~~~wr~~f~~~~~~~~~~~  251 (521)
                      +..+...+....++.+. |+++|++..++++ ...++|.++++.+ |.+.+..|+ ..|++.+.++++.+
T Consensus       305 ~~~~~~~~~~~~~i~~~-~~~~~~~~q~~~~~~~~g~g~~~g~~~~G~l~~~~g~-~~~~~~~~~~~~~~  372 (382)
T TIGR00902       305 GTFAVCHLAAMRYIAAQ-PGSEIAKLQALYNALAMGGLIAIFTAFAGFIYPTLGA-GTFVFMAIIAAAAF  372 (382)
T ss_pred             HHHHHHHHHHHHHHHhC-CHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccH-HHHHHHHHHHHHHH
Confidence            99999999999999998 9999999999986 5778999999999 778888886 66777777776655

This family of proteins is involved in the uptake of 3-phenylpropionic acid. This uptake mechanism is for the metabolism of phenylpropanoid compounds and plays an important role in the natural degradative cycle of these aromatic molecules.

>PRK09556 uhpT sugar phosphate antiporter; Reviewed

Probab=99.28  E-value=4.1e-11  Score=120.57  Aligned_cols=143  Identities=19%  Similarity=0.154  Sum_probs=110.1

Q ss_pred             ceeeecceeeCCccccchhhHHHHHHHHHHhhhhhhhccccCCCCchHHHHHHHHHHHHHHH--HHhccccHHHHHHHHH
Q 039541          103 TIISDWSLECAGSSILSGLPSSCFFIGCLLGGLALSTLGDSSSLGRKKLLFLSCFAMSITAL--ATIFANNIWIYSTIRF  180 (521)
Q Consensus       103 ~i~~~~~~~~~~~~~~~~~~~s~~~lg~~i~~~~~g~l~dr~~~Grr~~l~~~~~~~~~~~~--~~~~~~~~~~l~~~r~  180 (521)
                      .+++++|++..+.    ++..+...++..++.+++|+++||  +|||+.+.....+..++..  .....++.+.+.+.++
T Consensus       284 yl~~~~g~s~~~a----~~~~~~~~~~~~ig~~~~G~lsDr--~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  357 (467)
T PRK09556        284 YAFQELGFSKEDA----INTFTLFEIGALVGSLLWGWLSDL--ANGRRALVACIALALIIFTLGVYQHATSEYMYLASLF  357 (467)
T ss_pred             HHHHccCCCHHHH----HHHHHHHHHHHHHHHHHHHHHHHH--HCCCchHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHH
Confidence            4567789988666    899999999999999999999999  9999887765544444332  2234457777778888


Q ss_pred             HhhccchhhHhhhhhheeeeecCcchhHHHHHHHHHHHH-HHHHHHHH-HHhhc------------CCchhHHHHHHHHH
Q 039541          181 VAGFFRAPIMTSVIVLLSEMVSKRWRGQVVIIGFTFFSF-GLVSLPAV-AYLSR------------GSSWKMLYVWTSIP  246 (521)
Q Consensus       181 l~G~~~g~~~~~~~~~i~~~~~~~~rg~~~~~~~~~~~~-G~~i~~~i-~~~~~------------~~~wr~~f~~~~~~  246 (521)
                      +.|++...........+.|.+|++.||++.|+.+....+ |..++|.+ |++.+            ..+|+..|++.++.
T Consensus       358 ~~G~~~~~~~~~~~~~~~~~~p~~~~g~a~gi~~~~g~l~g~~~~~~~~G~i~~~~~~g~~~~~~~~~~~~~~f~~~~~~  437 (467)
T PRK09556        358 ALGFLVFGPQLLIGVAAVGFVPKKAIGVANGIKGTFAYLFGDSFAKVGLGMIADPTKNGTPIFGYTLTGWAGTFAALDIA  437 (467)
T ss_pred             HHHHHHhhHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHhHHHHhhhHHHHhcccccccccccccccChHHHHHHHHHH
Confidence            888654433333345667999999999999999988886 76888777 88887            56899999988777


Q ss_pred             HHHHH
Q 039541          247 SIVCC  251 (521)
Q Consensus       247 ~~~~~  251 (521)
                      .++..
T Consensus       438 ~~~~~  442 (467)
T PRK09556        438 AIGCI  442 (467)
T ss_pred             HHHHH
Confidence            77665

>TIGR00900 2A0121 H+ Antiporter protein

Probab=99.27  E-value=1.4e-10  Score=112.84  Aligned_cols=163  Identities=11%  Similarity=-0.060  Sum_probs=119.3

Q ss_pred             HHHHHHHHHHHHHHhHHhhccCCCccHHHHH---HHHHHHhHhHHHHHHHHHhhcCCchHHHHHHHHHHHHHHHHHhcCC
Q 039541          333 TIMALAFGIGVVYFGLLLGVGNLSFNIYLSL---AFNGLLDIPAYLLTFILIERWSRKSSILTFCILSGTCSAICVAIGD  409 (521)
Q Consensus       333 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~i~~~~~~~~~~  409 (521)
                      ..++..+........+|.+..+.+.+.....   ....++..++.++.|+++||+|||+.+..+..+..++.++..+...
T Consensus         7 ~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~   86 (365)
T TIGR00900         7 AQLISLIGTAITQVALPLYVLAGTGSASVLSLAALAGMLPYVVLSPIAGALADRYDRKKVMIGADLIRAVLVAVLPFVAL   86 (365)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHhhhHHHHhhchhHHHHHHHHHHHHHHHHHHHHHH
Confidence            3344444555555666776666665544433   4455677788999999999999999999988887777666655431


Q ss_pred             ---chHHHHHHHHHHHHHHHHHHHHHHHHhhccccCchhhhhhhHHHHHhhhhhhhHHHHHHHhh--ccchhHHHHHHHH
Q 039541          410 ---EQEVLQIGLELASFFSACVAFNVLLVFGTELFTTCVRNSTTSLVRQAVNLGAAFSPVLISAG--RQNEFLSFGVFGL  484 (521)
Q Consensus       410 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~p~~~~~~--~~~~~~~~~~~~~  484 (521)
                         .+.+...+..++.+++.+...+...++..|.+|+++|+++.++.+....+|.+++|.+.+..  ..++...+.+.++
T Consensus        87 ~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~g~~~~~~~~~~  166 (365)
T TIGR00900        87 LGGLNIWQVYVLAGILAIAQAFFTPAYQAMLPDLVPEEQLTQANSLSQAVRSLFYIVGPGIGGLMYATLGIKWAIWVDAV  166 (365)
T ss_pred             cCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence               12256677778888888888899999999999999999999999999999999999998763  3456666666666


Q ss_pred             HHHHHhHhhhc
Q 039541          485 VVFCFGFFVVF  495 (521)
Q Consensus       485 ~~~~~~~~~~~  495 (521)
                      ..+++.+..+.
T Consensus       167 ~~~~~~~~~~~  177 (365)
T TIGR00900       167 GFAISALLIVS  177 (365)
T ss_pred             HHHHHHHHHHh
Confidence            55555444433

>TIGR00879 SP MFS transporter, sugar porter (SP) family

Probab=99.27  E-value=2e-11  Score=123.56  Aligned_cols=156  Identities=15%  Similarity=0.117  Sum_probs=121.4

Q ss_pred             CcceeeecceeeCCccccchhhHHHHHHHHHHhhhhhhhccccCCCCchHHHHHHHHHHHHHHHHHhc-----cc-----
Q 039541          101 DTTIISDWSLECAGSSILSGLPSSCFFIGCLLGGLALSTLGDSSSLGRKKLLFLSCFAMSITALATIF-----AN-----  170 (521)
Q Consensus       101 ~~~i~~~~~~~~~~~~~~~~~~~s~~~lg~~i~~~~~g~l~dr~~~Grr~~l~~~~~~~~~~~~~~~~-----~~-----  170 (521)
                      .|.+.+++|.+..+.    ++......++..++.++.|+++||  +|||+.+.++.++.+++.++.++     .+     
T Consensus       307 ~~~~~~~~g~~~~~~----~~~~~~~~~~~~~~~~~~g~l~d~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  380 (481)
T TIGR00879       307 SPTIFENAGVSTDHA----FLVSIIVGAVNFAFTFVAIFLVDR--FGRRPLLLIGAAGMAICLFVLGILGASFVTGSSKS  380 (481)
T ss_pred             HHHHHHHcCCCchHH----HHHHHHHHHHHHHHHHHHHHHHHH--hcchHHHHHHHHHHHHHHHHHHHHhhcccCCcccc
Confidence            466667788887555    888889999999999999999999  99999999998888887777652     12     


Q ss_pred             -cHHHHHHHHHHhhccchhhHhhhhhheeeeecCcchhHHHHHHHHHHHHHHHHHHHH-HHhhcCCchhHHHHHHHHHHH
Q 039541          171 -NIWIYSTIRFVAGFFRAPIMTSVIVLLSEMVSKRWRGQVVIIGFTFFSFGLVSLPAV-AYLSRGSSWKMLYVWTSIPSI  248 (521)
Q Consensus       171 -~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~rg~~~~~~~~~~~~G~~i~~~i-~~~~~~~~wr~~f~~~~~~~~  248 (521)
                       +...+....++.+.......+....++.|.+|+++|++++++.+....+|.+++|.+ +.+.++.+|++.|++.+++++
T Consensus       381 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~lg~~i~~~~~~~~~~~~~~~~~f~~~~~~~~  460 (481)
T TIGR00879       381 SGNVAIVFILLFIAFFAMGWGPVPWVIVSEIFPLSLRPKGISIAVAANWLANFIVGFLFPTMLESIGVGGVFIFFGGLNV  460 (481)
T ss_pred             hhHHHHHHHHHHHHHHHccccCeehhhhhccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccceehhHHHHHH
Confidence             223333333333322223446667788999999999999999999999999999987 777777899999999998888


Q ss_pred             HHHhhhceeeecch
Q 039541          249 VCCIIIYPFISESP  262 (521)
Q Consensus       249 ~~~~~~~~~~~esp  262 (521)
                      +..++..++.||++
T Consensus       461 ~~~i~~~~~~~~~~  474 (481)
T TIGR00879       461 LGLIFVYFFLPETK  474 (481)
T ss_pred             HHHHHHheecccCC
Confidence            88766667777754

This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083)

>PRK10054 putative transporter; Provisional

Probab=99.26  E-value=3.7e-10  Score=110.88  Aligned_cols=169  Identities=15%  Similarity=0.078  Sum_probs=117.5

Q ss_pred             HHHHHHHHHHHHHHHHHHhHHhhc-cCCCccHHHHHH---HHHHHhHhHHHHHHHHHhhcCCchHHHHHHHHHHHHHHHH
Q 039541          329 RRLLTIMALAFGIGVVYFGLLLGV-GNLSFNIYLSLA---FNGLLDIPAYLLTFILIERWSRKSSILTFCILSGTCSAIC  404 (521)
Q Consensus       329 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~---~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~i~~~~~  404 (521)
                      ...+..++..++.......++.++ ++.+.+....+.   ...+..+++.++.|+++||+|||+.+.++..+.+++.+.+
T Consensus        11 ~l~~~~~~~~~g~~~~~~~l~~~l~~~~g~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~g~k~~~~~~~~~~~~~~~~~   90 (395)
T PRK10054         11 ALLASSLLLTIGRGATLPFMTIYLSRQYSLSVDLIGYAMTIALTIGVVFSLGFGILADKFDKKRYMLLAITAFASGFIAI   90 (395)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcchhHHHHHHHHHHHHHHH
Confidence            334444455555555544444444 556766554443   3445677888999999999999999998888888877777


Q ss_pred             HhcCCchHHHHHHHHHHHHHHHHHHHHHHHHhhccccCchhhhhhhHHHHHhhhhhhhHHHHHHHhh-ccchhHHHHHHH
Q 039541          405 VAIGDEQEVLQIGLELASFFSACVAFNVLLVFGTELFTTCVRNSTTSLVRQAVNLGAAFSPVLISAG-RQNEFLSFGVFG  483 (521)
Q Consensus       405 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~p~~~~~~-~~~~~~~~~~~~  483 (521)
                      .+.++.  +..++...+.+.+.+...+....+..|..|++.|+++.|+.+...++|.+++|.+.++. ..++...|.+.+
T Consensus        91 ~~~~~~--~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~lg~~igp~l~~~l~~~g~~~~f~~~~  168 (395)
T PRK10054         91 PLVNNV--TLVVLFFALINCAYSVFSTVLKAWFADNLSSTSKTKIFSLNYTMLNIGWTVGPPLGTLLVMQSINLPFWLAA  168 (395)
T ss_pred             HHHhHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcHHHHHH
Confidence            665433  33444444555555666777888999999999999999999999999999999998863 345667777777


Q ss_pred             HHHHHHhHhh-hccccC
Q 039541          484 LVVFCFGFFV-VFLPET  499 (521)
Q Consensus       484 ~~~~~~~~~~-~~~~~~  499 (521)
                      ++.++..+.. +.+++.
T Consensus       169 ~~~~i~~i~~~~~~~~~  185 (395)
T PRK10054        169 ICSAFPLVFIQIWVQRS  185 (395)
T ss_pred             HHHHHHHHHHHHHHhcc
Confidence            6666654433 345444

>PRK11663 regulatory protein UhpC; Provisional

Probab=99.24  E-value=4.1e-10  Score=112.20  Aligned_cols=153  Identities=12%  Similarity=0.026  Sum_probs=115.5

Q ss_pred             HHhHHhhccCCCccHHHHH---HHHHHHhHhHHHHHHHHHhhcCCchHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHH
Q 039541          345 YFGLLLGVGNLSFNIYLSL---AFNGLLDIPAYLLTFILIERWSRKSSILTFCILSGTCSAICVAIGDEQEVLQIGLELA  421 (521)
Q Consensus       345 ~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~  421 (521)
                      ....|.+.++.+.+.....   ....++..++.++.|++.||+|||+.+.++.++.+++.++..+..+.  +...+..++
T Consensus        43 ~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~--~~l~~~~~l  120 (434)
T PRK11663         43 NAAMPEMLADLGLSRSDIGLLATLFYITYGVSKFVSGIVSDRSNARYFMGIGLIATGIINILFGFSSSL--WAFALLWVL  120 (434)
T ss_pred             HHhhHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhhHHHhhcCCchhHHHHHHHHHHHHHHHHHHhHH--HHHHHHHHH
Confidence            3446777777777654433   34556777899999999999999999999999998888877665433  445555666


Q ss_pred             HHHHHHHHHHHHHHhhccccCchhhhhhhHHHHHhhhhhhhHHHHHHHh--hccchhHHHHHHHHHHHHHhH-hhhcccc
Q 039541          422 SFFSACVAFNVLLVFGTELFTTCVRNSTTSLVRQAVNLGAAFSPVLISA--GRQNEFLSFGVFGLVVFCFGF-FVVFLPE  498 (521)
Q Consensus       422 ~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~p~~~~~--~~~~~~~~~~~~~~~~~~~~~-~~~~~~~  498 (521)
                      .+++.+..++....++.|.+|+++|++++++.+....+|..++|.+.+.  ...++...|.+.+++.++..+ ..+.++|
T Consensus       121 ~g~~~g~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~~~~~~~~~l~~~~gw~~~f~~~~i~~~~~~~~~~~~~~~  200 (434)
T PRK11663        121 NAFFQGWGWPVCAKLLTAWYSRTERGGWWAIWNTAHNVGGALIPLVVGAIALHYGWRYGMMIAGIIAIVVGLFLCWRLRD  200 (434)
T ss_pred             HHHHHHccchHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence            7777777788888999999999999999999999999999999998875  334677777777766554433 3344554


Q ss_pred             C
Q 039541          499 T  499 (521)
Q Consensus       499 ~  499 (521)
                      +
T Consensus       201 ~  201 (434)
T PRK11663        201 K  201 (434)
T ss_pred             C
Confidence            3

>PF07690 MFS_1: Major Facilitator Superfamily; InterPro: IPR011701 Among the different families of transporter, only two occur ubiquitously in all classifications of organisms

Probab=99.23  E-value=6e-10  Score=107.82  Aligned_cols=155  Identities=12%  Similarity=0.038  Sum_probs=119.2

Q ss_pred             HHHHHHHHHHHhHH-hhccCCCccH---HHHHHHHHHHhHhHHHHHHHHHhhcCCchHHHHHHHHHHHHHHHHHhcCCch
Q 039541          336 ALAFGIGVVYFGLL-LGVGNLSFNI---YLSLAFNGLLDIPAYLLTFILIERWSRKSSILTFCILSGTCSAICVAIGDEQ  411 (521)
Q Consensus       336 ~~~~~~~~~~~~~~-~~~~~~~~~~---~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~i~~~~~~~~~~~~  411 (521)
                      +..+.........+ .+.++.+.+.   ........+...++.++.|+++||+|||+.+..+.++.+++.++..+..+. 
T Consensus         7 ~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~-   85 (352)
T PF07690_consen    7 LSGFGFSIISPALPLYLAEELGLSPSQIGLLFSAFFLGSALFSPFAGYLSDRFGRRRVLIIGLLLFALGSLLLAFASNF-   85 (352)
T ss_dssp             HHHHHHHHHHHHHH-HHHCCSTTTSHCHHHHHHHHHHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHHHCCH-
T ss_pred             HHHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCeeeEeehhhhhhhHHHHhhhhhhH-
Confidence            33344444444556 5666766543   344455667788899999999999999999999999998885555443333 


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhccccCchhhhhhhHHHHHhhhhhhhHHHHHHHhh--ccchhHHHHHHHHHHHHH
Q 039541          412 EVLQIGLELASFFSACVAFNVLLVFGTELFTTCVRNSTTSLVRQAVNLGAAFSPVLISAG--RQNEFLSFGVFGLVVFCF  489 (521)
Q Consensus       412 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~p~~~~~~--~~~~~~~~~~~~~~~~~~  489 (521)
                       +...+..++.|++.+...+....++.|.+|+++|++++++......+|..++|.+.+..  ..++...+.+.+++.++.
T Consensus        86 -~~~~~~~~l~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~~~~~~~~~~~~~~~~~  164 (352)
T PF07690_consen   86 -WLLLIARFLLGIGSGFFSPASNALIADWFPPEERGRAFGILSAGFSLGSILGPLLGGFLISYFGWRWAFLISAILSLIA  164 (352)
T ss_dssp             -HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCTCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHCHHCCHHHHHHHHHHHH
T ss_pred             -HHHhhhccccccccccccccccccccccchhhhhhhccccccchhhhhhhcccchhhhhhhccccccccccccchhhhh
Confidence             56778888999999999999999999999999999999999999999999999999874  345667788888877776


Q ss_pred             hHh
Q 039541          490 GFF  492 (521)
Q Consensus       490 ~~~  492 (521)
                      .++
T Consensus       165 ~il  167 (352)
T PF07690_consen  165 AIL  167 (352)
T ss_dssp             HHH
T ss_pred             hhh
Confidence            654

These are the ATP-Binding Cassette (ABC) superfamily and the Major Facilitator Superfamily (MFS). The MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients [, ].; GO: 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2GFP_B 3O7P_A 3O7Q_A 1PW4_A.

>PRK10473 multidrug efflux system protein MdtL; Provisional

Probab=99.22  E-value=8.5e-10  Score=108.56  Aligned_cols=160  Identities=16%  Similarity=0.061  Sum_probs=118.1

Q ss_pred             HHHHHHHhHHhhccCCCccHHHHH---HHHHHHhHhHHHHHHHHHhhcCCchHHHHHHHHHHHHHHHHHhcCCchHHHHH
Q 039541          340 GIGVVYFGLLLGVGNLSFNIYLSL---AFNGLLDIPAYLLTFILIERWSRKSSILTFCILSGTCSAICVAIGDEQEVLQI  416 (521)
Q Consensus       340 ~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~  416 (521)
                      +........|.+.++.+.+.....   ....++..++.++.|+++||+|||+.+..+..+..++.......++.  +...
T Consensus        18 ~~~~~~~~lp~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~l~Dr~g~r~~l~~~~~~~~i~~~~~~~~~~~--~~~~   95 (392)
T PRK10473         18 GIDMYLVGLPRIAADLNASEAQLHIAFSVYLAGMAAAMLFAGKIADRSGRKPVAIPGAALFIIASLLCSLAETS--SLFL   95 (392)
T ss_pred             HHHHHhhhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhHhHHHHHhCChHHHHHHHHHHHHHHHHHHHhCcH--HHHH
Confidence            334444456777777776654333   34455667788999999999999999999998888888777665443  4555


Q ss_pred             HHHHHHHHHHHHHHHHHHHhhccccCchhhhhhhHHHHHhhhhhhhHHHHHHHhh--ccchhHHHHHHHHHHHHHhHh-h
Q 039541          417 GLELASFFSACVAFNVLLVFGTELFTTCVRNSTTSLVRQAVNLGAAFSPVLISAG--RQNEFLSFGVFGLVVFCFGFF-V  493 (521)
Q Consensus       417 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~p~~~~~~--~~~~~~~~~~~~~~~~~~~~~-~  493 (521)
                      +..++.+++.+...+....+..|.+|++.|+++.++.+....++..++|.+.+..  ..++...+.+.+++.++..+. .
T Consensus        96 ~~~~l~g~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~i~~~~~~~i~~~l~~~~g~~~~~~~~~~~~~i~~~~~~  175 (392)
T PRK10473         96 AGRFLQGIGAGCCYVVAFAILRDTLDDRRRAKVLSLLNGITCIIPVLAPVLGHLIMLKFPWQSLFYTMAAMGILVLLLSL  175 (392)
T ss_pred             HHHHHHHhhhhHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcChHHHHHHHHHHHHHHHHHHH
Confidence            6667778888888888999999999999999999999999999999999988753  345666677776666555444 3


Q ss_pred             hccccCCC
Q 039541          494 VFLPETIG  501 (521)
Q Consensus       494 ~~~~~~~~  501 (521)
                      +.++|+++
T Consensus       176 ~~~~~~~~  183 (392)
T PRK10473        176 FILKETRP  183 (392)
T ss_pred             HHcCCCCC
Confidence            45566543

>PRK03893 putative sialic acid transporter; Provisional

Probab=99.22  E-value=4.1e-11  Score=121.90  Aligned_cols=143  Identities=15%  Similarity=0.140  Sum_probs=110.9

Q ss_pred             Cccee-eecceeeCCccccchhhHHHHHHHHHHhhhhhhhccccCCCCchHHHHHHHHHHHHHHHHHhcc--ccHHHHHH
Q 039541          101 DTTII-SDWSLECAGSSILSGLPSSCFFIGCLLGGLALSTLGDSSSLGRKKLLFLSCFAMSITALATIFA--NNIWIYST  177 (521)
Q Consensus       101 ~~~i~-~~~~~~~~~~~~~~~~~~s~~~lg~~i~~~~~g~l~dr~~~Grr~~l~~~~~~~~~~~~~~~~~--~~~~~l~~  177 (521)
                      +|.+. +++|.+..+.    +++.+.+.++..++.++.|+++||  +|||++++.+.++..++.++....  .+.+.+.+
T Consensus       298 lp~~l~~~~g~~~~~~----g~~~~~~~~~~~~g~~~~g~l~dr--~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  371 (496)
T PRK03893        298 LPTYLKTDLGYDPHTV----ANVLFFSGFGAAVGCCVGGFLGDW--LGTRKAYVCSLLISQLLIIPVFAIGGANVWVLGL  371 (496)
T ss_pred             HHHHHHhhcCCCHHHH----HHHHHHHHHHHHHHHHHHHHHHHH--hcchHHHHHHHHHHHHHHHHHhhccccHHHHHHH
Confidence            34444 5888888666    999999999999999999999999  999999988877777666544433  34444545


Q ss_pred             HHHHhhccchhhHhhhhhheeeeecCcchhHHHHHHHHHHHHHHHHHHHH-HHhhcCCchhHHHHHHHHHHHH
Q 039541          178 IRFVAGFFRAPIMTSVIVLLSEMVSKRWRGQVVIIGFTFFSFGLVSLPAV-AYLSRGSSWKMLYVWTSIPSIV  249 (521)
Q Consensus       178 ~r~l~G~~~g~~~~~~~~~i~~~~~~~~rg~~~~~~~~~~~~G~~i~~~i-~~~~~~~~wr~~f~~~~~~~~~  249 (521)
                      ..++.+.......+...+++.|.+|+++|++++++......+|..+||.+ |.+.+..||+..+.+.+....+
T Consensus       372 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~lgp~l~g~l~~~~g~~~~~~~~~~~~~~  444 (496)
T PRK03893        372 LLFFQQMLGQGISGLLPKLIGGYFDTEQRAAGLGFTYNVGALGGALAPILGALIAQRLDLGTALASLSFSLTF  444 (496)
T ss_pred             HHHHHHHHhcccchhhHHHHHhhCCHHHhhcccchhhhhhhHHHHHHHHHHHHHhccCChHHHHHHHHHHHHH
Confidence            55555444334456677788999999999999999999999999999998 7888888999888665544333

>TIGR00893 2A0114 d-galactonate transporter

Probab=99.22  E-value=3.5e-10  Score=111.33  Aligned_cols=155  Identities=14%  Similarity=0.168  Sum_probs=119.6

Q ss_pred             HHHhHHhhccCCCccHH---HHHHHHHHHhHhHHHHHHHHHhhcCCchHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHH
Q 039541          344 VYFGLLLGVGNLSFNIY---LSLAFNGLLDIPAYLLTFILIERWSRKSSILTFCILSGTCSAICVAIGDEQEVLQIGLEL  420 (521)
Q Consensus       344 ~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~  420 (521)
                      ..+..|.+.++.+.+..   .......++..++.++.|++.||+|||+.+..+..+.+++..+..+..+.  +...+..+
T Consensus        13 ~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~   90 (399)
T TIGR00893        13 LSFAAPMLQEDLGLSAAQYGYVFSAFSWGYVVGQFPGGWLLDRFGARKTLAVFIVIWGVFTGLQAFAGAY--VSLYILRV   90 (399)
T ss_pred             hhHhHHHHHHhhCCChhhHHHHHHHHHHHHHHHHHhHHHHHHhcCcceeeHHHHHHHHHHHHHHHHHcCH--HHHHHHHH
Confidence            33445666666665543   33445567778899999999999999999999998888888877776544  56777788


Q ss_pred             HHHHHHHHHHHHHHHhhccccCchhhhhhhHHHHHhhhhhhhHHHHHHHh--hccchhHHHHHHHHHHHHHhHhh-hccc
Q 039541          421 ASFFSACVAFNVLLVFGTELFTTCVRNSTTSLVRQAVNLGAAFSPVLISA--GRQNEFLSFGVFGLVVFCFGFFV-VFLP  497 (521)
Q Consensus       421 ~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~p~~~~~--~~~~~~~~~~~~~~~~~~~~~~~-~~~~  497 (521)
                      +.|++.+...+....++.|.+|++.|+++.++......+|..++|.+.+.  ...++...+.+.+++.++..+.. +..+
T Consensus        91 l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  170 (399)
T TIGR00893        91 LLGAAEAPFFPGIILIVASWFPASERATAVSIFNSAQGLGGIIGGPLVGWILIHFSWQWAFIIEGVLGIIWGVLWLKFIP  170 (399)
T ss_pred             HHHHHHHhhhhHHHHHHHHhCCHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHhhheec
Confidence            88999888899999999999999999999999999999999999999875  33456777777776666555443 3445


Q ss_pred             cCC
Q 039541          498 ETI  500 (521)
Q Consensus       498 ~~~  500 (521)
                      +++
T Consensus       171 ~~~  173 (399)
T TIGR00893       171 DPP  173 (399)
T ss_pred             CCC
Confidence            443

>PRK11195 lysophospholipid transporter LplT; Provisional

Probab=99.22  E-value=5.9e-10  Score=109.38  Aligned_cols=169  Identities=11%  Similarity=-0.020  Sum_probs=113.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhHHhhccCCCccHHH---HHHHHHHHhHhHHHHHHHHHhhcCCchHHHHHHHHHHHHHHH
Q 039541          327 ALRRLLTIMALAFGIGVVYFGLLLGVGNLSFNIYL---SLAFNGLLDIPAYLLTFILIERWSRKSSILTFCILSGTCSAI  403 (521)
Q Consensus       327 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~i~~~~  403 (521)
                      ++...+..++..++........+....+.+.+...   ......+...+..++.|+++||+|||+++.++..+.+++.+.
T Consensus         5 f~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~l~~~l~~~~~G~laDr~grr~vl~~~~~~~~~~~~~   84 (393)
T PRK11195          5 FYAIMAAQFFSALADNALLFAAIALLKELHYPDWSQPLLQMFFVLAYIVLAPFVGAFADSFPKGRVMFIANGIKLLGCLL   84 (393)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHhhhhHhhhccCCchhhHHHHHHHHHHHHH
Confidence            33333333344443443444444445555554433   334455677788899999999999999999999888777666


Q ss_pred             HHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHhhccccCchhhhhhhHHHHHhhhhhhhHHHHHHHhhc-cchhHHHHHH
Q 039541          404 CVAIGDEQEVLQIGLELASFFSACVAFNVLLVFGTELFTTCVRNSTTSLVRQAVNLGAAFSPVLISAGR-QNEFLSFGVF  482 (521)
Q Consensus       404 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~p~~~~~~~-~~~~~~~~~~  482 (521)
                      +.+..+     ..+..++.|++.+...|...+++.|.+|+++|++++|+......+|..+||.+.|+.. ..+...+.+.
T Consensus        85 ~~~~~~-----~~~~r~l~G~~~a~~~pa~~a~i~~~~~~~~~~~a~~~~~~~~~~~~~~Gp~lgG~l~~~~~~~~~~i~  159 (393)
T PRK11195         85 MLFGIH-----PLLAYGLVGIGAAAYSPAKYGILTELLPGEKLVKANGWMEGSTIAAILLGTVLGGALADPHAEAALAVC  159 (393)
T ss_pred             HHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            544321     1445567888888999999999999999999999999999999999999999998632 2233334333


Q ss_pred             HHHHHHHhHhhhccccCC
Q 039541          483 GLVVFCFGFFVVFLPETI  500 (521)
Q Consensus       483 ~~~~~~~~~~~~~~~~~~  500 (521)
                      +.+.+++.+..+.+||.+
T Consensus       160 ~~~~~~~~~~~~~l~~~~  177 (393)
T PRK11195        160 ALIYLLAALFNLFIPRLG  177 (393)
T ss_pred             HHHHHHHHHHHhcCCCCc
Confidence            433333444445666543

>PRK10077 xylE D-xylose transporter XylE; Provisional

Probab=99.21  E-value=1.1e-10  Score=118.23  Aligned_cols=156  Identities=15%  Similarity=0.063  Sum_probs=117.1

Q ss_pred             CcceeeecceeeCCccccchhhHHHHHHHHHHhhhhhhhccccCCCCchHHHHHHHHHHHHHHHHHhccc--c-HH-HHH
Q 039541          101 DTTIISDWSLECAGSSILSGLPSSCFFIGCLLGGLALSTLGDSSSLGRKKLLFLSCFAMSITALATIFAN--N-IW-IYS  176 (521)
Q Consensus       101 ~~~i~~~~~~~~~~~~~~~~~~~s~~~lg~~i~~~~~g~l~dr~~~Grr~~l~~~~~~~~~~~~~~~~~~--~-~~-~l~  176 (521)
                      .|.+.+++|.+..+.    ++......++..++.++.|+++||  +|||++++.+.++.+++.++.+...  + .+ ..+
T Consensus       294 ~p~i~~~~g~~~~~~----~~~~~~~~~~~~i~~~~~g~l~dr--~g~r~~~i~~~~~~~v~~~~l~~~~~~~~~~~~~~  367 (479)
T PRK10077        294 APEIFKTLGASTDIA----LLQTIIVGVINLTFTVLAIMTVDK--FGRKPLQIIGALGMAIGMFSLGTAFYTQAPGIVAL  367 (479)
T ss_pred             HHHHHHHcCCCCchH----HHHHHHHHHHHHHHHHHHHHHHHH--hcChHHHHHhHHHHHHHHHHHHHHHhcCcccHHHH
Confidence            467777788876555    666677788889999999999999  9999999999999988887765431  2 11 222


Q ss_pred             HHHHHhhccchh-hHhhhhhheeeeecCcchhHHHHHHHHHHHHHHHHHHHH-H------HhhcCCchhHHHHHHHHHHH
Q 039541          177 TIRFVAGFFRAP-IMTSVIVLLSEMVSKRWRGQVVIIGFTFFSFGLVSLPAV-A------YLSRGSSWKMLYVWTSIPSI  248 (521)
Q Consensus       177 ~~r~l~G~~~g~-~~~~~~~~i~~~~~~~~rg~~~~~~~~~~~~G~~i~~~i-~------~~~~~~~wr~~f~~~~~~~~  248 (521)
                      .+-++.+++.+. ..+....++.|.+|+++|++++++......+|.++++.+ .      ++.+..+|++.|++.+++++
T Consensus       368 ~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~g~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~  447 (479)
T PRK10077        368 LSMLFYVAAFAMSWGPVCWVLLSEIFPNAIRGKALAIAVAAQWIANYFVSWTFPMMDKNSWLVAHFHNGFSYWIYGCMGV  447 (479)
T ss_pred             HHHHHHHHHHhccccchhHHHhHhhCChhHHHHHHHHHHHHHHHHHHHHHHHhHHHHhccchhhhccCccHHHHHHHHHH
Confidence            333344443332 236678899999999999999999999999888887655 2      23356789999999888878


Q ss_pred             HHHhhhceeeecch
Q 039541          249 VCCIIIYPFISESP  262 (521)
Q Consensus       249 ~~~~~~~~~~~esp  262 (521)
                      +..++.+++.||+.
T Consensus       448 ~~~~~~~~~~~e~~  461 (479)
T PRK10077        448 LAALFMWKFVPETK  461 (479)
T ss_pred             HHHHHHHhccccCC
Confidence            77766677788874

>KOG3098 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.21  E-value=1.7e-08  Score=97.48  Aligned_cols=309  Identities=14%  Similarity=0.049  Sum_probs=190.3

Q ss_pred             hhh-HHHHHHHHHHhhhhhhhccccCCCCchHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHhhccchhhHhhhhhhee
Q 039541          120 GLP-SSCFFIGCLLGGLALSTLGDSSSLGRKKLLFLSCFAMSITALATIFANNIWIYSTIRFVAGFFRAPIMTSVIVLLS  198 (521)
Q Consensus       120 ~~~-~s~~~lg~~i~~~~~g~l~dr~~~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~  198 (521)
                      |.. .++-+....++.++.+.+.|+  .|.|..+.++...+....+..-+ .|-+.+++.-.+.|+|.+..+..--.|++
T Consensus        52 Gy~~~aiiY~~ftv~~l~~psiv~~--i~~K~~lv~ga~~y~~f~~gfl~-~N~y~~yfssallG~Gaallw~GqG~ylt  128 (461)
T KOG3098|consen   52 GYYGQAIIYAFFTVSCLFAPSIVNF--LGPKWALVIGATCYAAFPLGFLF-PNSYYLYFSSALLGFGAALLWTGQGGYLT  128 (461)
T ss_pred             cHHHHHHHHHHHHHHHHhhHHHHHH--hhHHHHHHHHhHHHHHHHHHHHh-cchHHHHHHHHHhhhhHHheecccceehh
Confidence            444 677788888999999999999  99999999999999887777655 55677889999999999999999999999


Q ss_pred             eeecCcchhHHHHHHHHHHHHHHHHHHHHHHhhc---------CCchh--------------HHHHHHHHHHHHHHhhhc
Q 039541          199 EMVSKRWRGQVVIIGFTFFSFGLVSLPAVAYLSR---------GSSWK--------------MLYVWTSIPSIVCCIIIY  255 (521)
Q Consensus       199 ~~~~~~~rg~~~~~~~~~~~~G~~i~~~i~~~~~---------~~~wr--------------~~f~~~~~~~~~~~~~~~  255 (521)
                      |..+++.+.+..++.......+.++|..+-....         ..+-+              ..+.+...+..+.. ...
T Consensus       129 ~~st~~tie~Nisi~Wai~~~~li~Ggi~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~v~~~~~~l~~-i~~  207 (461)
T KOG3098|consen  129 SNSTRETIERNISIFWAIGQSSLIIGGIILFIYFQFSSSSAIITDGTRRLVFEVLFIDFEIKVLFGVLLAISVLSI-INF  207 (461)
T ss_pred             hcCChhhHHHHHHHHHHHHHHHHHhhhHhheeeeEecccccccccchhhhhcchhhhhHHHHHHHHHHHHHHHHHh-hhe
Confidence            9999999999999998888888888866632211         11111              11111111111111 222


Q ss_pred             eeeecchhHHHhcCCHHHHHHHHHHHhhhcCCCCCCCccccccCCCCCccccCCCcccccccHHHHhccHHHHHHHHHHH
Q 039541          256 PFISESPRWLFIHGHEAEAMAVLKRLASRSNYQSDYGLESCCLSNMPPKAKNVIPKLDLYSSLKDLFNRKWALRRLLTIM  335 (521)
Q Consensus       256 ~~~~esp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~  335 (521)
                      .++|.... ...+...+   ....                                 +......+++++++.........
T Consensus       208 ~~~p~~~~-~~~~~~~~---~~~~---------------------------------~~l~~~~~l~~~~~ml~L~~~f~  250 (461)
T KOG3098|consen  208 DFLPSKDV-VNCKSSSE---TSFS---------------------------------ELLKLTFKLLKTPKMLLLFPFFF  250 (461)
T ss_pred             eecCccch-hhhhhhcc---ccHH---------------------------------HHHHHHHHHhcCHhHHHHHHHHH
Confidence            23332110 00000000   0000                                 00013345566666443333322


Q ss_pred             HHHHHHHHHHHhHHhhc--c-CCCcc----HHHHHHHHHHHhHhHHHHHHHHHhh---cCCchHHHHHHHHHHHHHHHHH
Q 039541          336 ALAFGIGVVYFGLLLGV--G-NLSFN----IYLSLAFNGLLDIPAYLLTFILIER---WSRKSSILTFCILSGTCSAICV  405 (521)
Q Consensus       336 ~~~~~~~~~~~~~~~~~--~-~~~~~----~~~~~~~~~~~~~~~~~~~g~l~dr---~g~~~~~~~~~~~~~i~~~~~~  405 (521)
                      ..++...+..-..|.-+  . ..+.+    ........+++.+.+....+.+.+|   +|+++++.++..+..+..++..
T Consensus       251 ~tG~~~Sf~~~iypt~i~ft~~~~~n~~~~~ai~~~~~g~g~v~~g~~~~~l~~rir~fg~~~~~~~~~~~~~~~~~li~  330 (461)
T KOG3098|consen  251 YTGLETSFWISIYPTCISFTRKLGSNTTYLIAIYSIGIGLGEVIGGLDFSILSKRIRGFGRKPTVLIGIIIHLIGFLLIH  330 (461)
T ss_pred             HHHHHHHHHHhccchhhhhhhhccCcchhHHHHHHHHHhHHHHHHHHHHHHHhhhhhhcccCcchhHHHHHHHHHHHHHh
Confidence            22222221111111111  1 11211    2333455667777777777777765   6788888888887777776665


Q ss_pred             hcCCc-h---------------HHHHHHHHHHHHHHHHHHHHHHHHhhccccCchhhhhhhHHHHHhhhhhhhHHHHHHH
Q 039541          406 AIGDE-Q---------------EVLQIGLELASFFSACVAFNVLLVFGTELFTTCVRNSTTSLVRQAVNLGAAFSPVLIS  469 (521)
Q Consensus       406 ~~~~~-~---------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~p~~~~  469 (521)
                      +.... .               .....+..++.|++-.......+.++...+ ++.|..+.++...-..++..++-+...
T Consensus       331 l~~p~dap~~~t~~~~~~~~~~~~~~~ii~~l~G~~D~~~~t~~~~ii~~~~-~~~~~~~fsi~kfyq~~~s~v~~f~~~  409 (461)
T KOG3098|consen  331 LSFPNDAPLRPTDSPPLLFTPSYYLALIIGFLLGFGDACFNTQRYVIIALLY-PDDRAQAFSLFKFYQSVASCVAFFFSP  409 (461)
T ss_pred             ccccccCCCCCCcccccccccchhHHHHHHHHHhhHHHHHHHHHHHHHHHHh-cCchHHHHHHHHHHHHHHHHHHhhhhh
Confidence            43211 0               135667777888888888888899999998 556688888888777777666555544


Q ss_pred             h
Q 039541          470 A  470 (521)
Q Consensus       470 ~  470 (521)
                      .
T Consensus       410 ~  410 (461)
T KOG3098|consen  410 Y  410 (461)
T ss_pred             h
Confidence            3

>TIGR00897 2A0118 polyol permease family

Probab=99.21  E-value=1.3e-10  Score=114.66  Aligned_cols=143  Identities=13%  Similarity=0.115  Sum_probs=111.4

Q ss_pred             CcceeeecceeeCCccccchhhHHHHHHHHHHhhhhhhhccccCCCCchHHHH-HHHHHHHHHHHHHh-----ccccHHH
Q 039541          101 DTTIISDWSLECAGSSILSGLPSSCFFIGCLLGGLALSTLGDSSSLGRKKLLF-LSCFAMSITALATI-----FANNIWI  174 (521)
Q Consensus       101 ~~~i~~~~~~~~~~~~~~~~~~~s~~~lg~~i~~~~~g~l~dr~~~Grr~~l~-~~~~~~~~~~~~~~-----~~~~~~~  174 (521)
                      .|.+.+++|.+..+.    +++.+...++..++.++.|+++||  +|||+.+. .+.+..+++.+...     ..++.+.
T Consensus       245 ~p~~~~~~g~s~~~~----~~~~~~~~~~~~ig~~~~g~l~dr--~~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~~  318 (402)
T TIGR00897       245 LPMFVAELGFSTSEW----LQIWGTFFFTNIVFNVIFGIVGDK--LGWMNTVRWFGGVGCGIFTLALYYIPQHFGHSFAV  318 (402)
T ss_pred             HHHHHHHcCCChhHH----HHHHHHHHHHHHHHHHHHHHHHHh--hcchhHHHHHHHHHHHHHHHHHHHHHHccCCcHHH
Confidence            455557788888666    888899999999999999999999  99988764 33333344333322     2356777


Q ss_pred             HHHHHHHhhccchhhHhhhhhheeeeecCcchhHHHHHHHHHHHHHHHHHHHH-HHhhcCCchhHHHHHHHHHHHHHH
Q 039541          175 YSTIRFVAGFFRAPIMTSVIVLLSEMVSKRWRGQVVIIGFTFFSFGLVSLPAV-AYLSRGSSWKMLYVWTSIPSIVCC  251 (521)
Q Consensus       175 l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~rg~~~~~~~~~~~~G~~i~~~i-~~~~~~~~wr~~f~~~~~~~~~~~  251 (521)
                      +++..++.|++.+...+. ...+.|.. +++||++.|+.+....+|..++|.+ +.+.+..||+..+++.++..++..
T Consensus       319 ~~~~~~~~G~~~~~~~~~-~~~~~~~~-~~~~g~~~g~~~~~~~lg~~~gp~i~g~l~~~~g~~~~~~~~a~~~~i~~  394 (402)
T TIGR00897       319 ALIIAIALGIFLAGYVPL-AAVFPTLA-PKHKGAAMSVLNLSAGLSAFLAPAIAVLFIGFFGAIGVVWIFAALYVVSA  394 (402)
T ss_pred             HHHHHHHHHHHHHHHHHH-HHHHHhhC-cchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHH
Confidence            788899999988876554 45566764 4689999999999999999999988 788888899999999888877766

This family of proteins includes the ribitol and D-arabinitol transporters from Klebsiella pneumoniae and the alpha-ketoglutarate permease from Bacillus subtilis.

>TIGR00883 2A0106 metabolite-proton symporter

Probab=99.21  E-value=3.1e-11  Score=118.78  Aligned_cols=139  Identities=12%  Similarity=0.073  Sum_probs=109.3

Q ss_pred             eeeecceeeCCccccchhhHHHHHHHHHHhhhhhhhccccCCCCchHHHHHHHHHHHHHH--HHHhc--cccHHHHHHHH
Q 039541          104 IISDWSLECAGSSILSGLPSSCFFIGCLLGGLALSTLGDSSSLGRKKLLFLSCFAMSITA--LATIF--ANNIWIYSTIR  179 (521)
Q Consensus       104 i~~~~~~~~~~~~~~~~~~~s~~~lg~~i~~~~~g~l~dr~~~Grr~~l~~~~~~~~~~~--~~~~~--~~~~~~l~~~r  179 (521)
                      ++++++.+.++.    +.+.+...++..++.++.|+++||  +|||+.+.....+..+..  +...+  .++.+.+++..
T Consensus       246 ~~~~~g~~~~~~----~~~~~~~~~~~~~~~~~~g~l~dr--~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  319 (394)
T TIGR00883       246 LTQTLGLSANSA----LLVLMLSLILFFITIPLSGALSDR--IGRRPVLIIFTVLAALLAVPLLMALLDSGSFTLFFFLV  319 (394)
T ss_pred             HHHhcCCChhHH----HHHHHHHHHHHHHHHHHHHHHHHH--hchHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHH
Confidence            346778887665    888999999999999999999999  999998876554444333  22222  25677778888


Q ss_pred             HHhhccchhhHhhhhhheeeeecCcchhHHHHH-HHHHHHHHHHHHHHH-HHhhcCCc-hhHHHHHHHHHHH
Q 039541          180 FVAGFFRAPIMTSVIVLLSEMVSKRWRGQVVII-GFTFFSFGLVSLPAV-AYLSRGSS-WKMLYVWTSIPSI  248 (521)
Q Consensus       180 ~l~G~~~g~~~~~~~~~i~~~~~~~~rg~~~~~-~~~~~~~G~~i~~~i-~~~~~~~~-wr~~f~~~~~~~~  248 (521)
                      ++.|++.+...+...+++.|.+|+++|+++.++ .+.+..+|..++|.+ +.+.+..| |+..++......+
T Consensus       320 ~~~g~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~g~~~~p~~~g~l~~~~g~~~~~~~~~~~~~l  391 (394)
T TIGR00883       320 LGLALIGGMYTGPMGSFLPELFPTEVRYTGASLAYNLAGAIFGGFAPYIAAALVAMTGDWYAIGYYLAALAL  391 (394)
T ss_pred             HHHHHHHHHHhhhHHHHHHHhCCccceeeEeeehhHhHHHHHhhHHHHHHHHHHHHcCcchhHHHHHHHHHH
Confidence            999999988999999999999999999999998 456667888899988 67777777 8887776665444

This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc.

>PRK09952 shikimate transporter; Provisional

Probab=99.20  E-value=2.2e-10  Score=114.17  Aligned_cols=151  Identities=14%  Similarity=0.139  Sum_probs=108.5

Q ss_pred             eeeecceeeCCccccchhhHHHHHHHHHHhhhhhhhccccCCCCchHHHHHHHHHHHHHHHHHhc---c-ccHHHHHHHH
Q 039541          104 IISDWSLECAGSSILSGLPSSCFFIGCLLGGLALSTLGDSSSLGRKKLLFLSCFAMSITALATIF---A-NNIWIYSTIR  179 (521)
Q Consensus       104 i~~~~~~~~~~~~~~~~~~~s~~~lg~~i~~~~~g~l~dr~~~Grr~~l~~~~~~~~~~~~~~~~---~-~~~~~l~~~r  179 (521)
                      +.+++|.+.+..    ..+.....+...++.++.|+++||  +|||++++.+.++..++.+....   . ++.+.+++..
T Consensus       277 ~~~~~g~s~~~~----~~~~~~~g~~~~i~~~~~g~l~Dr--~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  350 (438)
T PRK09952        277 STQNLGLPRELF----LNIGLLVGGLSCLTIPCFAWLADR--FGRRRVYITGALIGTLSAFPFFMALEAQSIFWIVFFSI  350 (438)
T ss_pred             HHHhcCCCHHHH----HHHHHHHHHHHHHHHHHHHHHHHH--hCchHHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHH
Confidence            445667666333    444455566677888999999999  99999998887766555433322   2 3355555667


Q ss_pred             HHhhccchhhHhhhhhheeeeecCcchhHHHHHHH-HHHHHHHHHHHHH-HHhhcC--CchhHHHHHHHHHHHHHHhhhc
Q 039541          180 FVAGFFRAPIMTSVIVLLSEMVSKRWRGQVVIIGF-TFFSFGLVSLPAV-AYLSRG--SSWKMLYVWTSIPSIVCCIIIY  255 (521)
Q Consensus       180 ~l~G~~~g~~~~~~~~~i~~~~~~~~rg~~~~~~~-~~~~~G~~i~~~i-~~~~~~--~~wr~~f~~~~~~~~~~~~~~~  255 (521)
                      ++.|++.+...+...+++.|.+|++.|+.+.++.. .+..+|..++|.+ +++.+.  .+|+.++.+.++..++.. +..
T Consensus       351 ~l~~~~~~~~~~~~~~~~~e~~p~~~r~tg~g~~~~~~~~lgg~~~p~i~g~l~~~~~~~~~~~~~~~~~~~~i~~-v~~  429 (438)
T PRK09952        351 MLANIAHDMVVCVQQPMFTEMFGASYRYSGAGVGYQVASVVGGGFTPFIAAALVTYFGGSWHSVAIYLLAGCLISA-MTA  429 (438)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHCCcchhHHHHhHHHHHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHH-HHH
Confidence            77788888888888999999999999998888854 4455788888888 666552  358888888877777776 444


Q ss_pred             eeeecc
Q 039541          256 PFISES  261 (521)
Q Consensus       256 ~~~~es  261 (521)
                      +.++|+
T Consensus       430 ~~~~~~  435 (438)
T PRK09952        430 LLMKDN  435 (438)
T ss_pred             HHcccc
Confidence            455664

>PRK10213 nepI ribonucleoside transporter; Reviewed

Probab=99.20  E-value=1.6e-09  Score=106.43  Aligned_cols=150  Identities=13%  Similarity=0.024  Sum_probs=115.1

Q ss_pred             HHhhccCCCccHHHHH---HHHHHHhHhHHHHHHHHHhhcCCchHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHH
Q 039541          348 LLLGVGNLSFNIYLSL---AFNGLLDIPAYLLTFILIERWSRKSSILTFCILSGTCSAICVAIGDEQEVLQIGLELASFF  424 (521)
Q Consensus       348 ~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~  424 (521)
                      .|.+.++.+.+.....   ....++..++.++.|++.||+|||+.+..+..+.+++.+...+.++.  +..++.-++.|+
T Consensus        43 l~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~~--~~l~~~r~l~G~  120 (394)
T PRK10213         43 LTPMAQDLGISEGVAGQSVTVTAFVAMFASLFITQTIQATDRRYVVILFAVLLTLSCLLVSFANSF--SLLLIGRACLGL  120 (394)
T ss_pred             HHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcccCcHHHHHHHHHHHHHHHHHHHHHChH--HHHHHHHHHHHH
Confidence            3445566676654433   34556777889999999999999999999999999888777665433  667777788899


Q ss_pred             HHHHHHHHHHHhhccccCchhhhhhhHHHHHhhhhhhhHHHHHHHhh--ccchhHHHHHHHHHHHHHhHhh-hccccC
Q 039541          425 SACVAFNVLLVFGTELFTTCVRNSTTSLVRQAVNLGAAFSPVLISAG--RQNEFLSFGVFGLVVFCFGFFV-VFLPET  499 (521)
Q Consensus       425 ~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~p~~~~~~--~~~~~~~~~~~~~~~~~~~~~~-~~~~~~  499 (521)
                      +.+...+....++.|.+|+++|+.+.++......+|..++|.+.+..  ..++...|.+.+++.++..+.. ...||.
T Consensus       121 ~~g~~~~~~~~~i~~~~~~~~~~~a~~~~~~~~~~g~~ig~~l~~~l~~~~gw~~~f~~~~~l~~~~~l~~~~~~p~~  198 (394)
T PRK10213        121 ALGGFWAMSASLTMRLVPPRTVPKALSVIFGAVSIALVIAAPLGSFLGELIGWRNVFNAAAVMGVLCIFWIIKSLPSL  198 (394)
T ss_pred             hhHHHHHHHHHHHHHHcCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHCCCC
Confidence            98888999999999999999999999999999999999999999863  3456677776666555443332 234553

>TIGR02332 HpaX 4-hydroxyphenylacetate permease

Probab=99.20  E-value=1.5e-09  Score=107.30  Aligned_cols=156  Identities=13%  Similarity=0.042  Sum_probs=120.3

Q ss_pred             HHHhHHhhccCCCccHHHHH---HHHHHHhHhHHHHHHHHHhhcCCchHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHH
Q 039541          344 VYFGLLLGVGNLSFNIYLSL---AFNGLLDIPAYLLTFILIERWSRKSSILTFCILSGTCSAICVAIGDEQEVLQIGLEL  420 (521)
Q Consensus       344 ~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~  420 (521)
                      ..+..+.+.++++.+.....   ....++..++.+..|++.||+|||+.+..+.++.+++.+...+.++.  +.+++.-+
T Consensus        27 ~~~~~~~l~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~G~r~~~~~~~~~~~~~~~~~~~~~~~--~~l~~~r~  104 (412)
T TIGR02332        27 IGFAGLTMGKDLGLSATMFGLAATLFYAAYVICGIPSNIMLAIIGARRWIAGIMVLWGIASTATMFATGP--ESLYLLRI  104 (412)
T ss_pred             HHHHHHhhHhhcCCCHHHHHHHHHHHHHHHHHHHhhHHHHHHHhChHHHHHHHHHHHHHHHHHHHHhcCH--HHHHHHHH
Confidence            33445666677776654443   44446667788999999999999999999999999888888776554  56677778


Q ss_pred             HHHHHHHHHHHHHHHhhccccCchhhhhhhHHHHHhhhhhhhHHHHHHHhh--------ccchhHHHHHHHHHHHHHhH-
Q 039541          421 ASFFSACVAFNVLLVFGTELFTTCVRNSTTSLVRQAVNLGAAFSPVLISAG--------RQNEFLSFGVFGLVVFCFGF-  491 (521)
Q Consensus       421 ~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~p~~~~~~--------~~~~~~~~~~~~~~~~~~~~-  491 (521)
                      +.|++.+...+....++.|.+|+++|+++.++.+....+|..++|.+.++.        ..++...|.+.++..++..+ 
T Consensus       105 l~G~~~~~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~gwr~~f~~~~~~~l~~~~~  184 (412)
T TIGR02332       105 LVGIAEAGFLPGILLYLTFWFPAYFRARANALFMIAMPVTMALGLILSGYILALDGLMALKGWQWLFLLEGFPSVILGVM  184 (412)
T ss_pred             HHHHHHhhHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCccchhHHHHHHHHHHHHHHHH
Confidence            889998888888889999999999999999999999999999999888752        13677888887776655443 


Q ss_pred             hhhccccCCC
Q 039541          492 FVVFLPETIG  501 (521)
Q Consensus       492 ~~~~~~~~~~  501 (521)
                      .++++||+++
T Consensus       185 ~~~~~~~~p~  194 (412)
T TIGR02332       185 TWFWLDDSPD  194 (412)
T ss_pred             HhhccCCCcc
Confidence            4456676553

This protein is a part of the Major Facilitator Superfamily (Pfam family pfam07690). Member of this family are found in a number of proteobacterial genomes, but only in the context of having genes for 4-hydroxyphenylacetate (4-HPA) degradation. The protein is characterized by Prieto, et al. (PubMed:9315705) as 4-hydroxyphenylacetate permease in E. coli, where 3-HPA and 3,4-dihydroxyphenylacetate are shown to competitively inhibit 4-HPA transport and therefore also interact specificially.

>TIGR00891 2A0112 putative sialic acid transporter

Probab=99.19  E-value=6.2e-11  Score=117.18  Aligned_cols=135  Identities=19%  Similarity=0.179  Sum_probs=111.0

Q ss_pred             ceeeecceeeCCccccchhhHHHHHHHHHHhhhhhhhccccCCCCchHHHHHHHHHHHHHHH-HHhccccHHHHHHHHHH
Q 039541          103 TIISDWSLECAGSSILSGLPSSCFFIGCLLGGLALSTLGDSSSLGRKKLLFLSCFAMSITAL-ATIFANNIWIYSTIRFV  181 (521)
Q Consensus       103 ~i~~~~~~~~~~~~~~~~~~~s~~~lg~~i~~~~~g~l~dr~~~Grr~~l~~~~~~~~~~~~-~~~~~~~~~~l~~~r~l  181 (521)
                      .+.+++|.+..+.    +++.+...++..++.++.|+++||  +|||+.+.++.++.++..+ +....++.+.+.+..++
T Consensus       264 ~~~~~~g~s~~~~----~~~~~~~~~~~~~g~~~~g~l~dr--~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  337 (405)
T TIGR00891       264 YLKADLGLSPHTV----ANIVVFSNIGAIVGGCVFGFLGDW--LGRRKAYVCSLLAGQLLIIPVFAIGANVAVLGLGLFF  337 (405)
T ss_pred             HHHHHhCCCHHHH----HHHHHHHHHHHHHHHHHHHHHHHH--hCchhhhHHHHHHHHHHHHHHHHhCCchHHHHHHHHH
Confidence            3456788888666    999999999999999999999999  9999999888776543332 33445677777777788


Q ss_pred             hhccchhhHhhhhhheeeeecCcchhHHHHHHHHHHHHHHHHHHHH-HHhhcCCc-hhHHHHHH
Q 039541          182 AGFFRAPIMTSVIVLLSEMVSKRWRGQVVIIGFTFFSFGLVSLPAV-AYLSRGSS-WKMLYVWT  243 (521)
Q Consensus       182 ~G~~~g~~~~~~~~~i~~~~~~~~rg~~~~~~~~~~~~G~~i~~~i-~~~~~~~~-wr~~f~~~  243 (521)
                      .|++.+...+...+++.|.+|+++|++++|+.+....+|..++|++ |.+.+..| |+..+...
T Consensus       338 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~g~~~~g~l~~~~g~~~~~~~~~  401 (405)
T TIGR00891       338 QQMLVQGIWGILPKHLGEYFPTDQRAAGLGFTYQLGNLGGALAPIIGALLAQRLDEYGTALASL  401 (405)
T ss_pred             HHHHHccchhhHHHHHhhhCCcchhHHHhhHHHHHHHHHHHHHHHHHHHHHHhccccchhHHhh
Confidence            8877777778888899999999999999999999999999999998 78888777 87766553

>TIGR00710 efflux_Bcr_CflA drug resistance transporter, Bcr/CflA subfamily

Probab=99.19  E-value=1e-09  Score=107.75  Aligned_cols=153  Identities=16%  Similarity=0.093  Sum_probs=117.2

Q ss_pred             hHHhhccCCCccHHHHH---HHHHHHhHhHHHHHHHHHhhcCCchHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHH
Q 039541          347 GLLLGVGNLSFNIYLSL---AFNGLLDIPAYLLTFILIERWSRKSSILTFCILSGTCSAICVAIGDEQEVLQIGLELASF  423 (521)
Q Consensus       347 ~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~  423 (521)
                      ..|.+.++.+.+.....   ....++..++.++.|++.||+|||+.+..+..+..++.+.....++.  +...+..++.+
T Consensus        27 ~~p~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~l~g  104 (385)
T TIGR00710        27 AFPEIAADLSTPASIVQMTLTLYLLGFAAGQLLWGPLSDRYGRRPVLLLGLFIFALSSLGLALSNNI--ETLLVLRFVQA  104 (385)
T ss_pred             cHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhhhhHHHhcCChHHHHHHHHHHHHHHHHHHHHccH--HHHHHHHHHHH
Confidence            34666677776554333   44556778889999999999999999999998888888877765543  56666778888


Q ss_pred             HHHHHHHHHHHHhhccccCchhhhhhhHHHHHhhhhhhhHHHHHHHhh--ccchhHHHHHHHHHHHHHhHhh-hccccCC
Q 039541          424 FSACVAFNVLLVFGTELFTTCVRNSTTSLVRQAVNLGAAFSPVLISAG--RQNEFLSFGVFGLVVFCFGFFV-VFLPETI  500 (521)
Q Consensus       424 ~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~p~~~~~~--~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~  500 (521)
                      ++.+...+....+..|.+|+++|+++.++.+....+|..++|.+.+..  ..++...+.+.+++.++..+.. +..||++
T Consensus       105 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  184 (385)
T TIGR00710       105 FGASAGSVISQALVRDIYPGEELSRIYSILMPVLALAPAVAPLLGGYILVWLSWHAIFAFLSLAGILLSALIFFILPETL  184 (385)
T ss_pred             cchhHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHhCCCCC
Confidence            888888899999999999999999999999999999999999998762  3456667776666665554443 4456544


Q ss_pred             C
Q 039541          501 G  501 (521)
Q Consensus       501 ~  501 (521)
                      +
T Consensus       185 ~  185 (385)
T TIGR00710       185 P  185 (385)
T ss_pred             C
Confidence            3

This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 12 membrane-spanning regions. Members with known activity include Bcr (bicyclomycin resistance protein) in E. coli, Flor (chloramphenicol and florfenicol resistance) in Salmonella typhimurium DT104, and CmlA (chloramphenicol resistance) in Pseudomonas sp. plasmid R1033.

>PRK03633 putative MFS family transporter protein; Provisional

Probab=99.19  E-value=1.3e-10  Score=113.86  Aligned_cols=141  Identities=16%  Similarity=0.189  Sum_probs=116.4

Q ss_pred             cceeeecceeeCCccccchhhHHHHHHHHHHhhhhhhhccccCCCCchHHHHHHHHHHHHHHHHHhccccHHHHHHHHHH
Q 039541          102 TTIISDWSLECAGSSILSGLPSSCFFIGCLLGGLALSTLGDSSSLGRKKLLFLSCFAMSITALATIFANNIWIYSTIRFV  181 (521)
Q Consensus       102 ~~i~~~~~~~~~~~~~~~~~~~s~~~lg~~i~~~~~g~l~dr~~~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l  181 (521)
                      |.+.++.|.+.++.    +++.+...++..+++++.|++.||  +|+|+++..+..+..++.+...  . ........++
T Consensus       224 p~~~~~~g~s~~~~----g~~~~~~~~~~~~~~~~~g~l~dr--~~~~~~l~~~~~~~~~~~~~~~--~-~~~~~~~~~l  294 (381)
T PRK03633        224 PLYLNHQGMSDASI----GFWMALLVSAGILGQWPIGRLADR--FGRLLVLRVQVFVVILGSIAML--S-QAAMAPALFI  294 (381)
T ss_pred             HHHHHHcCCCHHHH----HHHHHHHHHHHHHHHhhhHHHHHH--cCcHHHHHHHHHHHHHHHHHHh--h-hHHHHHHHHH
Confidence            44445567777555    889999999999999999999999  9999999988888877766543  2 2344557788


Q ss_pred             hhccchhhHhhhhhheeeeecCcchhHHHHHHHHHHHHHHHHHHHH-HHhhcCCchhHHHHHHHHHHHHHH
Q 039541          182 AGFFRAPIMTSVIVLLSEMVSKRWRGQVVIIGFTFFSFGLVSLPAV-AYLSRGSSWKMLYVWTSIPSIVCC  251 (521)
Q Consensus       182 ~G~~~g~~~~~~~~~i~~~~~~~~rg~~~~~~~~~~~~G~~i~~~i-~~~~~~~~wr~~f~~~~~~~~~~~  251 (521)
                      .|++.+...|...+++.|..|+++++.+.+.+....++|.++||.+ |.+.++.+|++.|.+.+.+.++..
T Consensus       295 ~g~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~lG~~igp~~~G~l~~~~g~~~~f~~~~~~~l~~~  365 (381)
T PRK03633        295 LGAAGFTLYPVAMAWACEKVEHHELVAMNQALLLSYTVGSLLGPSFTAMLMQNYSDNLLFIMIASVSFIYL  365 (381)
T ss_pred             HHHHHHhHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHH
Confidence            8888777889999999999998888888888888999999999998 788888899999999888877665

>PRK10091 MFS transport protein AraJ; Provisional

Probab=99.19  E-value=1.7e-09  Score=105.97  Aligned_cols=157  Identities=11%  Similarity=0.009  Sum_probs=119.9

Q ss_pred             HHHHHhHHhhccCCCccHHH---HHHHHHHHhHhHHHHHHHHHhhcCCchHHHHHHHHHHHHHHHHHhcCCchHHHHHHH
Q 039541          342 GVVYFGLLLGVGNLSFNIYL---SLAFNGLLDIPAYLLTFILIERWSRKSSILTFCILSGTCSAICVAIGDEQEVLQIGL  418 (521)
Q Consensus       342 ~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~  418 (521)
                      ......+|.+.++.+.+...   ......++..++.++.|++.||+|||+.+..+..+.+++.++..+.++.  +.+++.
T Consensus        20 ~~~~~~l~~~~~~~g~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~l~~~~~~~--~~l~~~   97 (382)
T PRK10091         20 FGIMGVLTELAHDVGISIPAAGHMISYYALGVVVGAPIIALFSSRYSLKHILLFLVALCVIGNAMFTLSSSY--LMLAIG   97 (382)
T ss_pred             HHHHhChHHHHHHcCCCHHHHhHHHHHHHHHHHHHHHHHHHHHccCccHHHHHHHHHHHHHHHHHHHHhCcH--HHHHHH
Confidence            33334456666777765433   3455667888999999999999999999999999999988888776554  567777


Q ss_pred             HHHHHHHHHHHHHHHHHhhccccCchhhhhhhHHHHHhhhhhhhHHHHHHHhh--ccchhHHHHHHHHHHHHHhHh-hhc
Q 039541          419 ELASFFSACVAFNVLLVFGTELFTTCVRNSTTSLVRQAVNLGAAFSPVLISAG--RQNEFLSFGVFGLVVFCFGFF-VVF  495 (521)
Q Consensus       419 ~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~p~~~~~~--~~~~~~~~~~~~~~~~~~~~~-~~~  495 (521)
                      .++.|++.+...+.......|.+|++.|+.+.++......+|..++|.+.+..  ..++.+.|.+.+++.++..+. ...
T Consensus        98 r~l~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~gwr~~f~~~~~~~~~~~~~~~~~  177 (382)
T PRK10091         98 RLVSGFPHGAFFGVGAIVLSKIIKPGKVTAAVAGMVSGMTVANLLGIPLGTYLSQEFSWRYTFLLIAVFNIAVLASIYFW  177 (382)
T ss_pred             HHHHHhhhHHHHHHHHHHHHHhCChHHhhHHHHHHHHHHHHHHHHhccHHHHHhhhccHHHHHHHHHHHHHHHHHHHHHh
Confidence            78888888888888888899999999999999999888899999998887753  346777777777766554443 345


Q ss_pred             cccCC
Q 039541          496 LPETI  500 (521)
Q Consensus       496 ~~~~~  500 (521)
                      +||.+
T Consensus       178 lp~~~  182 (382)
T PRK10091        178 VPDIR  182 (382)
T ss_pred             CCCCC
Confidence            66644

>PRK11646 multidrug resistance protein MdtH; Provisional

Probab=99.18  E-value=2.2e-09  Score=105.67  Aligned_cols=165  Identities=16%  Similarity=0.064  Sum_probs=118.9

Q ss_pred             HHHHHHHHHHHHHHHhHHh-hccCCCccHHHHHHHHH---HHhHhHHHHHHHHHhhcCCchHHHHHHHHHHHHHHHHHhc
Q 039541          332 LTIMALAFGIGVVYFGLLL-GVGNLSFNIYLSLAFNG---LLDIPAYLLTFILIERWSRKSSILTFCILSGTCSAICVAI  407 (521)
Q Consensus       332 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~---~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~i~~~~~~~~  407 (521)
                      ...++...+....+..++. +.++.+.+....+...+   +...+..++.|+++||+|||+++..+..+.+++.+.+...
T Consensus        17 ~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~gl~~~~~~l~~~~~~~~~G~l~dr~g~k~~l~~~~~~~~~~~~~~~~~   96 (400)
T PRK11646         17 IDNMLVVLGFFVVFPLISIRFVDQLGWAAVMVGIALGLRQFIQQGLGIFGGAIADRFGAKPMIVTGMLMRAAGFATMAIA   96 (400)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHhhhhHHHHHhCchHHHHHHHHHHHHHHHHHHHh
Confidence            3344444554444444444 44566777666555444   4445567889999999999999999999999988887765


Q ss_pred             CCchHHHHHHHHHHHHHHHHHHHHHHHHhhccccCchhhhhhhHHHHHhhhhhhhHHHHHHHhh-ccchhHHHHHHHHHH
Q 039541          408 GDEQEVLQIGLELASFFSACVAFNVLLVFGTELFTTCVRNSTTSLVRQAVNLGAAFSPVLISAG-RQNEFLSFGVFGLVV  486 (521)
Q Consensus       408 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~p~~~~~~-~~~~~~~~~~~~~~~  486 (521)
                      ++.  +...+..++.+++.+...+...+++.|.+|++.|+++.|+.+....+|..++|.+.++. ..++...|.+.++..
T Consensus        97 ~~~--~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~g~~ig~~l~g~l~~~g~~~~f~~~~~~~  174 (400)
T PRK11646         97 HEP--WLLWLSCILSGLGGTLFDPPRTALVIKLIRPHQRGRFFSLLMMQDSAGAVIGALLGSWLLQYDFRLVCATGAVLF  174 (400)
T ss_pred             ccH--HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence            433  55666677778777777788889999999999999999999999999999999998863 345566666666655


Q ss_pred             HHHhHh-hhcccc
Q 039541          487 FCFGFF-VVFLPE  498 (521)
Q Consensus       487 ~~~~~~-~~~~~~  498 (521)
                      ++..++ .+..|+
T Consensus       175 ~~~~i~~~~~~~~  187 (400)
T PRK11646        175 VLAAAFNAWLLPA  187 (400)
T ss_pred             HHHHHHHHHhCCc
Confidence            554433 344454

>COG2271 UhpC Sugar phosphate permease [Carbohydrate transport and metabolism]

Probab=99.18  E-value=1.9e-10  Score=107.10  Aligned_cols=151  Identities=12%  Similarity=0.022  Sum_probs=124.0

Q ss_pred             HhHHhhccCCCccHHHHHHH---HHHHhHhHHHHHHHHHhhcCCchHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHH
Q 039541          346 FGLLLGVGNLSFNIYLSLAF---NGLLDIPAYLLTFILIERWSRKSSILTFCILSGTCSAICVAIGDEQEVLQIGLELAS  422 (521)
Q Consensus       346 ~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~  422 (521)
                      ...|.+.++.+.+....+.+   ..+.--++.++.|.++||.+.|+.+..+++++++..+++.+.+..  +...++.++.
T Consensus        50 ~a~p~l~e~~~lsk~~lG~i~s~f~i~YG~sKf~~G~~sDr~npr~fm~~gLilsai~nil~Gfs~s~--~~~~~l~~ln  127 (448)
T COG2271          50 LAMPALIEDGGLSKTQLGILGSAFSITYGVSKFVMGVLSDRSNPRYFMAFGLILSAIVNILFGFSPSL--FLFAVLWVLN  127 (448)
T ss_pred             hccHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHhhhhcccCCCceeehHHHHHHHHHHHHHhhhhHH--HHHHHHHHHH
Confidence            44577777777765555444   445555889999999999999999999999999999999987733  6788889999


Q ss_pred             HHHHHHHHHHHHHhhccccCchhhhhhhHHHHHhhhhhhhHHHHHH--Hh--hccchhHHHHHHHHHHHHHhHhh-hccc
Q 039541          423 FFSACVAFNVLLVFGTELFTTCVRNSTTSLVRQAVNLGAAFSPVLI--SA--GRQNEFLSFGVFGLVVFCFGFFV-VFLP  497 (521)
Q Consensus       423 ~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~p~~~--~~--~~~~~~~~~~~~~~~~~~~~~~~-~~~~  497 (521)
                      |.+.+..+|.....+..-+|+++||+..++-++..++|+.+.|.+.  +.  .+.++...|++-++++++..+.. +.++
T Consensus       128 g~fQg~Gwpp~~~~i~~Wfsr~eRG~~~siWn~shNiGGal~~~~~~la~~~~~~~w~~~f~~pgiiaiival~~~~~~r  207 (448)
T COG2271         128 GWFQGMGWPPCARTITHWFSRKERGTWWSIWNTSHNIGGALAPLVALLAFFAFHGGWRAAFYFPGIIAIIVALILLFLLR  207 (448)
T ss_pred             HHHhcCCCcHHHHHHHHHcCccccCceEEEehhhhhcccchHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHhC
Confidence            9999999999999999999999999999999999999999999888  54  33477888888888887766554 4444


Q ss_pred             c
Q 039541          498 E  498 (521)
Q Consensus       498 ~  498 (521)
                      +
T Consensus       208 d  208 (448)
T COG2271         208 D  208 (448)
T ss_pred             C
Confidence            3

>TIGR00887 2A0109 phosphate:H+ symporter

Probab=99.18  E-value=7.2e-10  Score=112.58  Aligned_cols=136  Identities=15%  Similarity=0.113  Sum_probs=95.5

Q ss_pred             HHHHHHHHHhhhhhhhccccCCCCchHHHHHHHHHHHHHHHHHhcccc----HHHHHHHHHHhhccchhhHhhhhhheee
Q 039541          124 SCFFIGCLLGGLALSTLGDSSSLGRKKLLFLSCFAMSITALATIFANN----IWIYSTIRFVAGFFRAPIMTSVIVLLSE  199 (521)
Q Consensus       124 s~~~lg~~i~~~~~g~l~dr~~~Grr~~l~~~~~~~~~~~~~~~~~~~----~~~l~~~r~l~G~~~g~~~~~~~~~i~~  199 (521)
                      .+..++..++.+++++++||  +|||++++++.++.+++.++.++..+    ...+...-+...++..+..+....+..|
T Consensus       342 ~~~~~~~i~g~~~~~~l~dr--~gRR~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E  419 (502)
T TIGR00887       342 IIALAGTVPGYWVTVFLVDI--IGRKPIQLMGFFILTVLFFVLGFAYNHLSTHGFLAIYVLAQFFANFGPNATTFIVPGE  419 (502)
T ss_pred             HHHHHHHHHHHHHHHHHhhh--hcchhHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHhcCCCchhhhhhhc
Confidence            34455667788999999999  99999999888887777666654321    1111111111112222234556677899


Q ss_pred             eecCcchhHHHHHHHHHHHHHHHHHHHH-HHhhcC----------CchhHHHHHHHHHHHHHHhhhceeeecch
Q 039541          200 MVSKRWRGQVVIIGFTFFSFGLVSLPAV-AYLSRG----------SSWKMLYVWTSIPSIVCCIIIYPFISESP  262 (521)
Q Consensus       200 ~~~~~~rg~~~~~~~~~~~~G~~i~~~i-~~~~~~----------~~wr~~f~~~~~~~~~~~~~~~~~~~esp  262 (521)
                      .+|.+.|+++.++.+....+|.+++|.+ +.+.+.          .++...|++.++..++.. +..+++||+.
T Consensus       420 ~~p~~~R~~~~g~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-i~~~~lpEt~  492 (502)
T TIGR00887       420 VFPTRYRSTAHGISAASGKAGAIIGQFGFLYLAQHGDPTKGYPTGIWMGHVLEIFALFMFLGI-LFTLLIPETK  492 (502)
T ss_pred             cCchhHHHHHHHHHHHHhhhHHHHHHHHhhhhhccccccccccccccchHHHHHHHHHHHHHH-HHheEeccCC
Confidence            9999999999999999999999999887 666652          345667888887777766 4457789974

This model represents the phosphate uptake symporter subfamily of the major facilitator superfamily (pfam00083).

>PRK09705 cynX putative cyanate transporter; Provisional

Probab=99.17  E-value=2.7e-10  Score=111.88  Aligned_cols=153  Identities=15%  Similarity=0.116  Sum_probs=119.9

Q ss_pred             cceeeecceeeCCccccchhhHHHHHHHHHHhhhhhhhccccCCCCchHHHHHHHHHHHHHHHHHhccc-cHHHHHHHHH
Q 039541          102 TTIISDWSLECAGSSILSGLPSSCFFIGCLLGGLALSTLGDSSSLGRKKLLFLSCFAMSITALATIFAN-NIWIYSTIRF  180 (521)
Q Consensus       102 ~~i~~~~~~~~~~~~~~~~~~~s~~~lg~~i~~~~~g~l~dr~~~Grr~~l~~~~~~~~~~~~~~~~~~-~~~~l~~~r~  180 (521)
                      |.+.+++|.+.++.    |...+.+.++..++.++.|++.||  +|||+.+..+..+..++.++....+ +...+  .-+
T Consensus       229 p~~l~~~g~s~~~a----g~~~~~~~i~~i~g~~~~g~l~~r--~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~--~~~  300 (393)
T PRK09705        229 PAFYIEIGASAQYS----GSLLALMTLGQAAGALLMPAMARH--QDRRKLLMLALVLQLVGFCGFIWLPLQLPVL--WAM  300 (393)
T ss_pred             HHHHHHcCCChhhh----hHHHHHHHHHHHHHHHHHHHHHhh--ccchHHHHHHHHHHHHHHHHHHHccchHHHH--HHH
Confidence            44445678888776    999999999999999999999999  9999999998888877776654333 32222  234


Q ss_pred             HhhccchhhHhhhhhheeeeec-CcchhHHHHHHHHHHHHHHHHHHHH-HHhhcCCc-hhHHHHHHHHHHHHHHhhhcee
Q 039541          181 VAGFFRAPIMTSVIVLLSEMVS-KRWRGQVVIIGFTFFSFGLVSLPAV-AYLSRGSS-WKMLYVWTSIPSIVCCIIIYPF  257 (521)
Q Consensus       181 l~G~~~g~~~~~~~~~i~~~~~-~~~rg~~~~~~~~~~~~G~~i~~~i-~~~~~~~~-wr~~f~~~~~~~~~~~~~~~~~  257 (521)
                      +.|++.+...+.......+..+ +++|++..++.+....++..++|.+ |++.+..| |+..|++.++..++..+....+
T Consensus       301 l~g~g~g~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~gp~~~G~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~  380 (393)
T PRK09705        301 VCGLGLGGAFPLCLLLALDHSVQPAIAGKLVAFMQGIGFIIAGLAPWFSGVLRSISGNYLMDWAFHALCVVGLMIITLRF  380 (393)
T ss_pred             HHHHhccchHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHh
Confidence            6688888888877766667774 5789999999999999999999988 77777654 8888888888777777666777


Q ss_pred             eecch
Q 039541          258 ISESP  262 (521)
Q Consensus       258 ~~esp  262 (521)
                      .||++
T Consensus       381 ~~~~~  385 (393)
T PRK09705        381 APARF  385 (393)
T ss_pred             ccccc
Confidence            78765

>TIGR00792 gph sugar (Glycoside-Pentoside-Hexuronide) transporter

Probab=99.16  E-value=1.3e-09  Score=108.88  Aligned_cols=116  Identities=21%  Similarity=0.201  Sum_probs=99.1

Q ss_pred             chhhHHHHHHHHHHhhhhhhhccccCCCCchHHHHHHHHHHHHHHHHHhcc-ccHHHHHHHHHHhhccchhhHhhhhhhe
Q 039541          119 SGLPSSCFFIGCLLGGLALSTLGDSSSLGRKKLLFLSCFAMSITALATIFA-NNIWIYSTIRFVAGFFRAPIMTSVIVLL  197 (521)
Q Consensus       119 ~~~~~s~~~lg~~i~~~~~g~l~dr~~~Grr~~l~~~~~~~~~~~~~~~~~-~~~~~l~~~r~l~G~~~g~~~~~~~~~i  197 (521)
                      .+++.+...++..++.+++++++||  +|+|+++.++.++.+++.++..+. ++.+.+++..++.|++.+...+...+++
T Consensus       259 ~~~~~~~~~i~~ii~~~~~~~l~~r--~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~  336 (437)
T TIGR00792       259 FSYMGSIAIVAGLIGVLLFPRLVKK--FGRKILFAGGILLMVLGYLIFFFAGSNLPLILVLIILAGFGQNFVTGLVWALV  336 (437)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH--hCcHHHHHHHHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3778888899999999999999999  999999999999888888777665 4667778888999999999999999999


Q ss_pred             eeeec-------CcchhHHHHHHHHHHHHHHHHHHHH-HHhhcCCch
Q 039541          198 SEMVS-------KRWRGQVVIIGFTFFSFGLVSLPAV-AYLSRGSSW  236 (521)
Q Consensus       198 ~~~~~-------~~~rg~~~~~~~~~~~~G~~i~~~i-~~~~~~~~w  236 (521)
                      +|..+       ++++|.+.++.+....+|..+++.+ +.+.+..||
T Consensus       337 ~~~~~~~~~~~~~~~~G~~~~~~~~~~~~g~~lg~~i~g~ll~~~G~  383 (437)
T TIGR00792       337 ADTVDYGEWKTGVRAEGLVYSVRTFVRKLGQALAGFLVGLILGIIGY  383 (437)
T ss_pred             hhhhhhhhhhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence            98865       4568999999999999999999888 666654444

GPH:cation symporters catalyze uptake of sugars in symport with a monovalent cation (H+ or Na+). Members of this family includes transporters for melibiose, lactose, raffinose, glucuronides, pentosides and isoprimeverose. Mutants of two groups of these symporters (the melibiose permeases of enteric bacteria, and the lactose permease of Streptococcus thermophilus) have been isolated in which altered cation specificity is observed or in which sugar transport is uncoupled from cation symport (i.e., uniport is catalyzed). The various members of the family can use Na+, H+ or Li, Na+ or Li+, H+ or Li+, or only H+ as the symported cation. All of these proteins possess twelve putative transmembrane a-helical spanners.

>PRK12307 putative sialic acid transporter; Provisional

Probab=99.16  E-value=1.4e-09  Score=108.37  Aligned_cols=140  Identities=7%  Similarity=0.026  Sum_probs=109.3

Q ss_pred             HHHHHhHHhhccCCCccHHH---HHHHHHHHhHhHHHHHHHHHhhcCCchHHHHHHHHHHHHHHHHHhcCCchHHHHHHH
Q 039541          342 GVVYFGLLLGVGNLSFNIYL---SLAFNGLLDIPAYLLTFILIERWSRKSSILTFCILSGTCSAICVAIGDEQEVLQIGL  418 (521)
Q Consensus       342 ~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~  418 (521)
                      ....+..+.+.++.+.+...   ......++..++.++.|+++||+|||+.+..+.++.+++.++..+..+.  +...+.
T Consensus        35 ~~~~~~~~~i~~~~~~s~~~~~~~~~~~~~~~~l~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~--~~l~~~  112 (426)
T PRK12307         35 MLIFYIMYLIKADLGLTDMEGAFLATAAFIGRPFGGALFGLLADKFGRKPLMMWSIVAYSVGTGLSGLASGV--IMLTLS  112 (426)
T ss_pred             HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHhHH--HHHHHH
Confidence            34455566666677655433   3344557778899999999999999999999999999988877765543  567777


Q ss_pred             HHHHHHHHHHHHHHHHHhhccccCchhhhhhhHHHHHhhhhhhhHHHHHHHhh--ccchhHHHHHHH
Q 039541          419 ELASFFSACVAFNVLLVFGTELFTTCVRNSTTSLVRQAVNLGAAFSPVLISAG--RQNEFLSFGVFG  483 (521)
Q Consensus       419 ~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~p~~~~~~--~~~~~~~~~~~~  483 (521)
                      -++.|++.+..++....++.|.+|++.|+++.++......+|.+++|.+.+..  ..++...+.+..
T Consensus       113 r~l~G~g~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lg~~~~~~l~~~l~~~~~w~~~f~i~~  179 (426)
T PRK12307        113 RFIVGMGMAGEYACASTYAVESWPKHLKSKASAFLVSGFGIGNIIAAYFMPSFAEAYGWRAAFFVGL  179 (426)
T ss_pred             HHHHHHHHhhHHHHHHHHHHHhCCHhHhhHhhhHHHHHHhHHHHHHHHHHHHHcccCCHHHHHHHHH
Confidence            78888888888999999999999999999999999998899999998887652  235556665533

>PLN00028 nitrate transmembrane transporter; Provisional

Probab=99.15  E-value=4.6e-09  Score=105.75  Aligned_cols=147  Identities=14%  Similarity=0.058  Sum_probs=102.2

Q ss_pred             HHhhccCCCccHHHH---HHHHHHHhHhHHHHHHHHHhhcCCchHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHH
Q 039541          348 LLLGVGNLSFNIYLS---LAFNGLLDIPAYLLTFILIERWSRKSSILTFCILSGTCSAICVAIGDEQEVLQIGLELASFF  424 (521)
Q Consensus       348 ~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~  424 (521)
                      .+.+.++++.+....   .....++..++.++.|+++||+|||+.+..+.++.+++.++..+..+.  +..++..++.|+
T Consensus        59 ~~~l~~~~gls~~~~g~~~~~~~~~~~~~~~~~G~l~dr~G~r~~~~~~~~~~~~~~~~~~~~~s~--~~l~~~r~l~G~  136 (476)
T PLN00028         59 LPIIRDNLNLTKSDIGNAGIASVSGSIFSRLAMGPVCDLYGPRYGSAFLLMLTAPAVFCMSLVSSA--TGFIAVRFFIGF  136 (476)
T ss_pred             HHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHhcCH--HHHHHHHHHHHH
Confidence            455666777654333   334446677888999999999999999999888888887777665443  344455566676


Q ss_pred             HHHHHHHHHHHhhccccCchhhhhhhHHHHHhhhhhhhHHHHHHHhh-----------ccchhHHHHHHHHHHHHHhHhh
Q 039541          425 SACVAFNVLLVFGTELFTTCVRNSTTSLVRQAVNLGAAFSPVLISAG-----------RQNEFLSFGVFGLVVFCFGFFV  493 (521)
Q Consensus       425 ~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~p~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~  493 (521)
                      +.+.. .....++.|.+|++.|+.+.|+.+....+|..+++.+.+..           ..++...|.+.+++.++..+..
T Consensus       137 ~~~~~-~~~~~~i~~~~~~~~rg~a~g~~~~~~~~g~~~~~~~~~~i~~~~~~~~~~~~~gWr~~f~i~g~l~l~~~l~~  215 (476)
T PLN00028        137 SLATF-VSCQYWMSTMFNGKIVGTANGIAAGWGNLGGGVTQLLMPLVFPLIKDAGAPSFTAWRIAFFVPGLLHIIMGILV  215 (476)
T ss_pred             HHHhh-HHHHHHHHHhcChhheeHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcchhhhHHHHHHHHHHHHHHHHHH
Confidence            66543 33455788999999999999999887777777665544321           1257778888887776665554


Q ss_pred             hccc
Q 039541          494 VFLP  497 (521)
Q Consensus       494 ~~~~  497 (521)
                      ++++
T Consensus       216 ~~~~  219 (476)
T PLN00028        216 LTLG  219 (476)
T ss_pred             HHHc
Confidence            4443

>PRK03699 putative transporter; Provisional

Probab=99.15  E-value=1.8e-10  Score=113.24  Aligned_cols=149  Identities=13%  Similarity=0.081  Sum_probs=124.0

Q ss_pred             eeeecceeeCCccccchhhHHHHHHHHHHhhhhhhhccccCCCCchHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHhh
Q 039541          104 IISDWSLECAGSSILSGLPSSCFFIGCLLGGLALSTLGDSSSLGRKKLLFLSCFAMSITALATIFANNIWIYSTIRFVAG  183 (521)
Q Consensus       104 i~~~~~~~~~~~~~~~~~~~s~~~lg~~i~~~~~g~l~dr~~~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G  183 (521)
                      +++++|++..+.    +++.+.+.++..++.++.|+++||  +|||+.+.....+..+..++....++.+.+.+..++.|
T Consensus       232 l~~~~g~s~~~~----~~~~~~~~~~~~ig~~~~g~l~dr--~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G  305 (394)
T PRK03699        232 AQKKFGMSLEDA----GNLVSNFWMAYMVGMWIFSFIVRF--FDLQRILTVLAGLALVLMYLFVNTDDPSHLLYAILGLG  305 (394)
T ss_pred             HHHHcCCChHHh----hHHHHHHHHHHHHHHHHHHHHHHH--hchhhHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHH
Confidence            346789988777    999999999999999999999999  99999999888887777777777788877778889999


Q ss_pred             ccchhhHhhhhhheeeeecCcchhHHHHHHHHHHHHHHHHHHHH-HHhhcCCchhHHHHHHHHHHHHHHhhhceeeec
Q 039541          184 FFRAPIMTSVIVLLSEMVSKRWRGQVVIIGFTFFSFGLVSLPAV-AYLSRGSSWKMLYVWTSIPSIVCCIIIYPFISE  260 (521)
Q Consensus       184 ~~~g~~~~~~~~~i~~~~~~~~rg~~~~~~~~~~~~G~~i~~~i-~~~~~~~~wr~~f~~~~~~~~~~~~~~~~~~~e  260 (521)
                      ++.+..++...++..|..| +++++..+.......+|..++|.+ |.+.+..||+..+++.+++.++.. ......++
T Consensus       306 ~~~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~g~~i~p~~~G~l~~~~g~~~~~~~~~~~~~~~~-~~~~~~~~  381 (394)
T PRK03699        306 FFSSAIYTTIITLGSQQTK-VASPKLVNFILTCGTIGTMLTFVVTSPIVAHFGLQAALLTANGLYAVVF-VMCILLGF  381 (394)
T ss_pred             HHHHHHHHHHHHHHHHHcc-CCCHHHHHHHHHhhhHHHHHHHHHHHHHHHHhCchhhhhhhHHHHHHHH-HHHHHHHH
Confidence            9888888888888777766 456788888888889999999988 788888899999998888877776 33444443

>TIGR00924 yjdL_sub1_fam amino acid/peptide transporter (Peptide:H+ symporter), bacterial

Probab=99.15  E-value=7.6e-10  Score=111.03  Aligned_cols=158  Identities=12%  Similarity=-0.022  Sum_probs=114.0

Q ss_pred             HHHHHHHHHhHHhhccC---CCccHHHH---HHHHHHHhHhHHHHHHHHHhh-cCCchHHHHHHHHHHHHHHHHHhcCCc
Q 039541          338 AFGIGVVYFGLLLGVGN---LSFNIYLS---LAFNGLLDIPAYLLTFILIER-WSRKSSILTFCILSGTCSAICVAIGDE  410 (521)
Q Consensus       338 ~~~~~~~~~~~~~~~~~---~~~~~~~~---~~~~~~~~~~~~~~~g~l~dr-~g~~~~~~~~~~~~~i~~~~~~~~~~~  410 (521)
                      .++.......++.++.+   .+.+....   .....+...++.+++|+++|| +|||+++.++..+.+++.+++.+..+.
T Consensus        23 ~~~~~~~~~~L~~yl~~~~~lg~s~~~ag~~~~~~~~~~~~~~~~~G~laDr~~G~~~~l~~~~~~~~~g~~~~~~~~~~  102 (475)
T TIGR00924        23 RFSYYGMQGILAVYLVQQAGLGFSQEQAFIIFGAYSALVYLLTSVGWWFGDRVWGTKKTMVLGGIVLMLGHFMLAMSIYP  102 (475)
T ss_pred             HHHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHhhHHHHHHhhcchHHHHHHHHHHHHHHHHHHHhcccH
Confidence            34444444445555543   56554333   344556778899999999999 899999999999999988877765433


Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHhhccccCchh---hhhhhHHHHHhhhhhhhHHHHHHHhh--ccchhHHHHHHHHH
Q 039541          411 QEVLQIGLELASFFSACVAFNVLLVFGTELFTTCV---RNSTTSLVRQAVNLGAAFSPVLISAG--RQNEFLSFGVFGLV  485 (521)
Q Consensus       411 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---r~~~~~~~~~~~~~g~~~~p~~~~~~--~~~~~~~~~~~~~~  485 (521)
                        +...+..++.+++.+...+...++..+.+|++.   |+.+.++.+...++|.+++|.+.++.  ..++...|.+.++.
T Consensus       103 --~~~~~~~~l~g~g~g~~~~~~~~~~a~~~~~~~~~~r~~~~~~~~~~~niG~~ig~~l~g~l~~~~g~~~~f~~~~~~  180 (475)
T TIGR00924       103 --DLIFYGLGTIAVGSGLFKANPSSMVGKLYERGDMPRRDGGFTLFYMSINIGSFISPLLAGVIAENYGYHVGFNLAAVG  180 (475)
T ss_pred             --hHHHHHHHHHHhccccccCCHHHHHHHhcCCCCcccccceehhHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHH
Confidence              345556666777777777888889999998754   88899999999999999999999863  23577777777765


Q ss_pred             HHHHhHhhhccc
Q 039541          486 VFCFGFFVVFLP  497 (521)
Q Consensus       486 ~~~~~~~~~~~~  497 (521)
                      .+++.+.++..+
T Consensus       181 ~~~~~l~~~~~~  192 (475)
T TIGR00924       181 MVIGLLTFFAGR  192 (475)
T ss_pred             HHHHHHHHHHcc
Confidence            555544444433

The model describes proton-dependent oligopeptide transporters in bacteria. This model is restricted in its range in recognizing bacterial proton-dependent oligopeptide transporters, although they are found in yeast, plants and animals. They function by proton symport in a 1:1 stoichiometry, which is variable in different species. All of them are predicted to contain 12 transmembrane domains, for which limited experimental evidence exists.

>TIGR00895 2A0115 benzoate transport

Probab=99.13  E-value=3.9e-10  Score=111.14  Aligned_cols=123  Identities=15%  Similarity=0.195  Sum_probs=101.9

Q ss_pred             CcceeeecceeeCCccccchhhHHHHHHHHHHhhhhhhhccccCCCCchHHHHHHHHHHHHHHHHHhccccHHHHHHHHH
Q 039541          101 DTTIISDWSLECAGSSILSGLPSSCFFIGCLLGGLALSTLGDSSSLGRKKLLFLSCFAMSITALATIFANNIWIYSTIRF  180 (521)
Q Consensus       101 ~~~i~~~~~~~~~~~~~~~~~~~s~~~lg~~i~~~~~g~l~dr~~~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~  180 (521)
                      .|.+.+++|.+.++.    ++..+...++..++.++.|+++||  +|||+.+....+......++....++.+.+++..+
T Consensus       273 ~~~~~~~~g~~~~~~----~~~~~~~~~~~~~~~~~~~~l~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  346 (398)
T TIGR00895       273 LPKLMVELGFSLSLA----ATGGALFNFGGVIGSIIFGWLADR--LGPRVTALLLLLGAVFAVLVGSTLFSPTLLLLLGA  346 (398)
T ss_pred             HHHHHHHcCCCHHHH----HHHHHHHHHHHHHHHHHHHHHHhh--cchHHHHHHHHHHHHHHHHHHHHhhCHHHHHHHHH
Confidence            456667788887666    999999999999999999999999  99995554444443333333333667788888899


Q ss_pred             HhhccchhhHhhhhhheeeeecCcchhHHHHHHHHHHHHHHHHHHHH-HH
Q 039541          181 VAGFFRAPIMTSVIVLLSEMVSKRWRGQVVIIGFTFFSFGLVSLPAV-AY  229 (521)
Q Consensus       181 l~G~~~g~~~~~~~~~i~~~~~~~~rg~~~~~~~~~~~~G~~i~~~i-~~  229 (521)
                      +.|++.+...+...+++.|.+|+++|+++.|+......+|..++|.+ |+
T Consensus       347 ~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~g~~~~G~  396 (398)
T TIGR00895       347 IAGFFVNGGQSGLYALMALFYPTAIRATGVGWAIGIGRLGAIIGPILAGY  396 (398)
T ss_pred             HHHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHhHHh
Confidence            99999999999999999999999999999999999999999999988 44

>COG2814 AraJ Arabinose efflux permease [Carbohydrate transport and metabolism]

Probab=99.13  E-value=5.1e-09  Score=98.92  Aligned_cols=149  Identities=13%  Similarity=0.026  Sum_probs=127.1

Q ss_pred             hHHhhccCCCccHH---HHHHHHHHHhHhHHHHHHHHHhhcCCchHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHH
Q 039541          347 GLLLGVGNLSFNIY---LSLAFNGLLDIPAYLLTFILIERWSRKSSILTFCILSGTCSAICVAIGDEQEVLQIGLELASF  423 (521)
Q Consensus       347 ~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~  423 (521)
                      .+|...++++.+..   +....++++..++.++...+.||+.||++++..+.+..++.++..+.++.  +.+.+.=++.+
T Consensus        35 LLp~iA~dl~vs~~~aG~lis~yAl~~ai~ap~l~~lt~r~~Rr~lLl~~l~lFi~~n~l~alAp~f--~~Ll~aR~~~g  112 (394)
T COG2814          35 LLPPIAADLGVSEGAAGQLITAYALGVALGAPLLALLTGRLERRRLLLGLLALFIVSNLLSALAPSF--AVLLLARALAG  112 (394)
T ss_pred             chHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHHHHHhccH--HHHHHHHHHHH
Confidence            35667777777654   44456677888999999999999999999999999999999999998877  67888899999


Q ss_pred             HHHHHHHHHHHHhhccccCchhhhhhhHHHHHhhhhhhhHHHHHHHh--hccchhHHHHHHHHHHHHHhHh-hhccc
Q 039541          424 FSACVAFNVLLVFGTELFTTCVRNSTTSLVRQAVNLGAAFSPVLISA--GRQNEFLSFGVFGLVVFCFGFF-VVFLP  497 (521)
Q Consensus       424 ~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~p~~~~~--~~~~~~~~~~~~~~~~~~~~~~-~~~~~  497 (521)
                      +..+..+++....+.++.|+++|+++.++......++..+|..+..+  ...++...|...+.+.++..+. +..+|
T Consensus       113 ~a~G~f~~i~~~~a~~lvpp~~~~~Aiaiv~~G~tlA~v~GvPLGt~ig~~~GWR~~F~~ia~l~ll~~~~~~~~lP  189 (394)
T COG2814         113 LAHGVFWSIAAALAARLVPPGKRGRALALVFTGLTLATVLGVPLGTFLGQLFGWRATFLAIAVLALLALLLLWKLLP  189 (394)
T ss_pred             HHHHHHHHHHHHHHHHHcCccchhhHHHHHHHHHHHHHHHhccHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhCC
Confidence            99999999999999999999999999999999999998888888765  3356888999888888877665 56677

>TIGR00712 glpT glycerol-3-phosphate transporter

Probab=99.13  E-value=1.7e-09  Score=107.93  Aligned_cols=152  Identities=11%  Similarity=0.011  Sum_probs=107.8

Q ss_pred             hHHhhccCCCccHHH---HHHHHHHHhHhHHHHHHHHHhhcCCchHHHHHHHHHHHHHHHHHhcCC--chHHHHHHHHHH
Q 039541          347 GLLLGVGNLSFNIYL---SLAFNGLLDIPAYLLTFILIERWSRKSSILTFCILSGTCSAICVAIGD--EQEVLQIGLELA  421 (521)
Q Consensus       347 ~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~i~~~~~~~~~~--~~~~~~~~~~~~  421 (521)
                      ..|+..+ .+.+...   ......++..++.++.|++.||+|||+.+..+.++.+++.+.....+.  .+.+...+..++
T Consensus        49 ~~p~~~~-~g~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l  127 (438)
T TIGR00712        49 AMPYLVE-QGFSKGELGFALSAISIAYGFSKFIMGSVSDRSNPRVFLPAGLILSAAVMLLMGFVPWATSSIAIMFVLLFL  127 (438)
T ss_pred             hhHHHHH-cCCCHhHhHHHHHHHHHHHHHhhhccchhhhccCCceehHHHHHHHHHHHHHHhccccccchHHHHHHHHHH
Confidence            3454443 3555433   334455677788999999999999999999888888888776655432  111344455666


Q ss_pred             HHHHHHHHHHHHHHhhccccCchhhhhhhHHHHHhhhhhhhHHHHHHHh-h--ccchhHHHHHHHHHHHHHhH-hhhccc
Q 039541          422 SFFSACVAFNVLLVFGTELFTTCVRNSTTSLVRQAVNLGAAFSPVLISA-G--RQNEFLSFGVFGLVVFCFGF-FVVFLP  497 (521)
Q Consensus       422 ~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~p~~~~~-~--~~~~~~~~~~~~~~~~~~~~-~~~~~~  497 (521)
                      .+++.+..++.....+.|.+|++.|++++++.+....+|+.++|.+.+. .  ..++...|.+.+++.++..+ ..++++
T Consensus       128 ~g~~~g~~~~~~~~~i~~~~~~~~rg~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~w~~~f~~~~~~~~i~~~~~~~~~~  207 (438)
T TIGR00712       128 NGWFQGMGWPPCGRTMVHWWSQSERGTIVSIWNCAHNIGGGIPPLLVLLGMAWFNDWHAALYFPAICAIIVALFAFAMMR  207 (438)
T ss_pred             HHHHhhcchHHHHHHHHHhcCcccchhHHHHHHHHHHhHhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHhcc
Confidence            7777777777788888999999999999999999999999988877653 1  23567778777777666544 345555


Q ss_pred             cC
Q 039541          498 ET  499 (521)
Q Consensus       498 ~~  499 (521)
                      |+
T Consensus       208 ~~  209 (438)
T TIGR00712       208 DT  209 (438)
T ss_pred             CC
Confidence            53

This model describes a very hydrophobic protein, predicted to span the membrane at least 8 times. The two members confirmed experimentally as glycerol-3-phosphate transporters, from E. coli and B. subtilis, share more than 50 % amino acid identity. Proteins of the hexose phosphate and phosphoglycerate transport systems are also quite similar.

>KOG3762 consensus Predicted transporter [General function prediction only]

Probab=99.13  E-value=2.3e-09  Score=102.54  Aligned_cols=173  Identities=13%  Similarity=0.206  Sum_probs=130.7

Q ss_pred             HHhccHHHHHHHHHHHHHHHHHHHHHHhHHhhccCCCccHH---HHHHHHHHHhHhHHHHHHHHHhhcCCchHHHHHHHH
Q 039541          320 DLFNRKWALRRLLTIMALAFGIGVVYFGLLLGVGNLSFNIY---LSLAFNGLLDIPAYLLTFILIERWSRKSSILTFCIL  396 (521)
Q Consensus       320 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~  396 (521)
                      +++.++.....++......++...+++.+-.++++.+....   ......-.+.++.-++.+++.+|+|+-+++..++.+
T Consensus       366 ~~~~s~~~llff~~av~mG~g~~lv~tFLfWHled~~~~~~LfGv~~a~~~~gEI~~~ffs~klI~kiGHv~v~~lgLa~  445 (618)
T KOG3762|consen  366 KVFASPHILLFFFVAVVMGAGVGLVFTFLFWHLEDLGGIKTLFGVVSALCHAGEILFYFFSFKLIEKIGHVNVMYLGLAC  445 (618)
T ss_pred             HHhcCCCEEehhHHHHHHHHHHHHHHHHHHHHHhhcCCcceeeeehhhhhccchHHHHHHHHHHHHHhcccceeeehhhH
Confidence            56677765555556666666666777766666777664332   223344466778888999999999999999999998


Q ss_pred             HHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHhhccccCchhhhhhhHHHHHhh-hhhhhHHHHHHHh--hcc
Q 039541          397 SGTCSAICVAIGDEQEVLQIGLELASFFSACVAFNVLLVFGTELFTTCVRNSTTSLVRQAV-NLGAAFSPVLISA--GRQ  473 (521)
Q Consensus       397 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~-~~g~~~~p~~~~~--~~~  473 (521)
                      ..+=++.+....+.  |..+..-++-+...+..+....++++...|++.|+++.++..... .+|--+|.+++|.  ...
T Consensus       446 ~~~Rf~~~S~L~n~--W~vLPieilqgit~aliWaa~~sY~s~vaPp~l~at~Q~l~~g~f~GlG~g~GslIGG~~v~~f  523 (618)
T KOG3762|consen  446 NVGRFLYYSYLQNP--WMVLPIEILQGITHALIWAAIISYASHVAPPGLRATAQGLLQGIFHGLGKGLGSLIGGFVVERF  523 (618)
T ss_pred             HHHHHHHHHHhcCc--hheeeHHHHHHHHHHHHHHHHHHHHHhhCCCcchHHHHHHHHHHhcccCcchhhhhhhhhheee
Confidence            88888888777666  788888899999999999999999999999999999999888765 6666677777765  234


Q ss_pred             chhHHHHHHHHHHHHHhHhhh
Q 039541          474 NEFLSFGVFGLVVFCFGFFVV  494 (521)
Q Consensus       474 ~~~~~~~~~~~~~~~~~~~~~  494 (521)
                      +....|-++++.+++..+...
T Consensus       524 g~~ttf~~~giAcl~~l~~~~  544 (618)
T KOG3762|consen  524 GARTTFRIFGIACLVTLALFI  544 (618)
T ss_pred             hhHHHHHHHHHHHHHHHHHHH
Confidence            566677777777766555443

>PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily

Probab=99.12  E-value=7.4e-10  Score=110.95  Aligned_cols=145  Identities=19%  Similarity=0.254  Sum_probs=130.2

Q ss_pred             Cccee-eecceeeCCccccchhhHHHHHHHHHHhhhhhhhccccCCCCchHHHHHHHHHHHHHHHHHhccccHHHHHHHH
Q 039541          101 DTTII-SDWSLECAGSSILSGLPSSCFFIGCLLGGLALSTLGDSSSLGRKKLLFLSCFAMSITALATIFANNIWIYSTIR  179 (521)
Q Consensus       101 ~~~i~-~~~~~~~~~~~~~~~~~~s~~~lg~~i~~~~~g~l~dr~~~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r  179 (521)
                      +|.+. +++|.+....    |++.+++.+|..+|+++.+++.+|  +++++.+..+.++++++.+..+++++.+..++.-
T Consensus       241 lPl~a~~~l~~~a~~y----Gll~a~~gvGai~Gal~~~~l~~~--~~~~~lv~~~~~~~a~~~~~lal~~~~~~~~~~l  314 (524)
T PF05977_consen  241 LPLFARDVLGGGASGY----GLLLAAFGVGAILGALLLPRLRRR--LSSRRLVLLASLLFALALLLLALSPSFWLALIAL  314 (524)
T ss_pred             hhHHHHHHhCCcHHHH----HHHHHHHHHHHHHHHHHHHHhhcc--cCcchhhHHHHHHHHHHHHHHhcchHHHHHHHHH
Confidence            34443 5688888555    999999999999999999999999  9999999999999999999999999999999999


Q ss_pred             HHhhccchhhHhhhhhheeeeecCcchhHHHHHHHHHHHHHHHHHHHH-HHhhcCCchhHHHHHHHHHHHHHH
Q 039541          180 FVAGFFRAPIMTSVIVLLSEMVSKRWRGQVVIIGFTFFSFGLVSLPAV-AYLSRGSSWKMLYVWTSIPSIVCC  251 (521)
Q Consensus       180 ~l~G~~~g~~~~~~~~~i~~~~~~~~rg~~~~~~~~~~~~G~~i~~~i-~~~~~~~~wr~~f~~~~~~~~~~~  251 (521)
                      ++.|++.........+.+.+..|++.|||+++++++....+..+|.++ |.+.+..|.+..+.+.++..++..
T Consensus       315 ~l~G~~~~~~~~~~~t~~Q~~~P~~~~GRv~si~~~~~~g~~~lGsll~G~la~~~g~~~al~~a~~~lll~~  387 (524)
T PF05977_consen  315 FLAGAAWIIANSSLNTLVQLSVPDWVRGRVFSIYQMVFFGGMPLGSLLWGFLADHFGVRTALLIAGAALLLSA  387 (524)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhCCHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999999999999888 888888899999888776655554

EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function [].

>PRK10504 putative transporter; Provisional

Probab=99.11  E-value=5.3e-09  Score=105.59  Aligned_cols=152  Identities=12%  Similarity=-0.053  Sum_probs=115.4

Q ss_pred             HHHHHHHhHHhhccCCCccHHHH---HHHHHHHhHhHHHHHHHHHhhcCCchHHHHHHHHHHHHHHHHHhcCCchHHHHH
Q 039541          340 GIGVVYFGLLLGVGNLSFNIYLS---LAFNGLLDIPAYLLTFILIERWSRKSSILTFCILSGTCSAICVAIGDEQEVLQI  416 (521)
Q Consensus       340 ~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~  416 (521)
                      .........|.+.++.+.+....   .....++..++.++.|++.||+|||+.+..+..+.+++.+...+..+.  +..+
T Consensus        25 ~~~~~~~~~p~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~~~~--~~l~  102 (471)
T PRK10504         25 DTTIVNTALPSMAQSLGESPLHMHMVIVSYVLTVAVMLPASGWLADRVGVRNIFFTAIVLFTLGSLFCALSGTL--NELL  102 (471)
T ss_pred             hHHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHhCCH--HHHH
Confidence            33444556777788887765443   334446667888999999999999999998888888777766654433  5566


Q ss_pred             HHHHHHHHHHHHHHHHHHHhhccccCchhhhhhhHHHHHhhhhhhhHHHHHHHhh--ccchhHHHHHHHHHHHHHhHhh
Q 039541          417 GLELASFFSACVAFNVLLVFGTELFTTCVRNSTTSLVRQAVNLGAAFSPVLISAG--RQNEFLSFGVFGLVVFCFGFFV  493 (521)
Q Consensus       417 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~p~~~~~~--~~~~~~~~~~~~~~~~~~~~~~  493 (521)
                      +..++.|++.+...+....++.|.+|++.|+++.++.+....+|..++|.+.+..  ..++.+.|.+...+.++..+..
T Consensus       103 ~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~g~l~~~~gw~~~f~~~~~~~~l~~~~~  181 (471)
T PRK10504        103 LARVLQGVGGAMMVPVGRLTVMKIVPREQYMAAMTFVTLPGQVGPLLGPALGGLLVEYASWHWIFLINIPVGIIGAIAT  181 (471)
T ss_pred             HHHHHHHhhhHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhccHHHHHHHHHHHHHHHHHHH
Confidence            7788888988888899999999999999999999999999999999999998862  3456667776665555544443

>PRK11128 putative 3-phenylpropionic acid transporter; Provisional

Probab=99.11  E-value=1.1e-09  Score=107.30  Aligned_cols=138  Identities=7%  Similarity=-0.091  Sum_probs=116.2

Q ss_pred             eecceeeCCccccchhhHHHHHHHHHHhhhhhhhccccCCCCchHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHhhcc
Q 039541          106 SDWSLECAGSSILSGLPSSCFFIGCLLGGLALSTLGDSSSLGRKKLLFLSCFAMSITALATIFANNIWIYSTIRFVAGFF  185 (521)
Q Consensus       106 ~~~~~~~~~~~~~~~~~~s~~~lg~~i~~~~~g~l~dr~~~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~  185 (521)
                      +|.|.+..+.    |.+.+...++..+..++.|++.||  +|+|+.+..+.++.+++.++.+++++.+.+++..++.|++
T Consensus       233 ~~~g~s~~~~----g~~~~~~~~~~~~~~~~~g~l~~r--~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~  306 (382)
T PRK11128        233 QAAGYSASTI----GYLWSLGVVAEVLIFAFSNRLFRR--WSARDLLLLSAICGVVRWGLMGSTTALPWLIVIQILHCGT  306 (382)
T ss_pred             HHCCCCHhHH----HHHHHHHHHHHHHHHHHHHHHHHH--CCHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Confidence            5678887555    999999999999999999999999  9999999999999999888888999999999999999999


Q ss_pred             chhhHhhhhhheeeeecCcchhHHHHHHH-HHHHHHHHHHHHH-HHhhcCCchhHHHHHHHHHHHHHH
Q 039541          186 RAPIMTSVIVLLSEMVSKRWRGQVVIIGF-TFFSFGLVSLPAV-AYLSRGSSWKMLYVWTSIPSIVCC  251 (521)
Q Consensus       186 ~g~~~~~~~~~i~~~~~~~~rg~~~~~~~-~~~~~G~~i~~~i-~~~~~~~~wr~~f~~~~~~~~~~~  251 (521)
                      .+...+....++.+. ++++++++.++.. ....+|..+||.+ |.+.+..|+ ..|+..+++.++.+
T Consensus       307 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~g~~ig~~i~G~l~~~~g~-~~~~~~~~~~~~~~  372 (382)
T PRK11128        307 FTVCHLAAMRYIAAR-PGSEVIRLQALYSALAMGGSIAIMTVLSGFLYQHLGA-GVFWVMALVALPAL  372 (382)
T ss_pred             HHHHHHHHHHHHHHC-CHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccH-HHHHHHHHHHHHHH
Confidence            999889988888886 5667788888876 5567788899998 777787787 46666666655544

>PRK11273 glpT sn-glycerol-3-phosphate transporter; Provisional

Probab=99.11  E-value=1.1e-09  Score=109.79  Aligned_cols=145  Identities=15%  Similarity=0.109  Sum_probs=100.8

Q ss_pred             eeeecceeeCCccccchhhHHHHHHHHHHhhhhhhhccccCCC--CchHHH-HHHHHHHHHHHHHHhc--cccHHHHHHH
Q 039541          104 IISDWSLECAGSSILSGLPSSCFFIGCLLGGLALSTLGDSSSL--GRKKLL-FLSCFAMSITALATIF--ANNIWIYSTI  178 (521)
Q Consensus       104 i~~~~~~~~~~~~~~~~~~~s~~~lg~~i~~~~~g~l~dr~~~--Grr~~l-~~~~~~~~~~~~~~~~--~~~~~~l~~~  178 (521)
                      ++++.|.+.++.    +++.+.+.++..++.++.|+++||  +  |||+.. +....+..++.++..+  ..+.+.+++.
T Consensus       280 l~~~~g~s~~~~----~~~~~~~~~~~~~g~~~~G~l~dr--~~~~r~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~  353 (452)
T PRK11273        280 LKEVKHFALDKS----SWAYFLYEYAGIPGTLLCGWMSDK--VFRGNRGATGVFFMTLVTIATIVYWLNPAGNPTVDMAC  353 (452)
T ss_pred             HHHhcCCCHHHH----HHHHHHHHHHHHHHHHHHHHHHHH--HccCCcchHHHHHHHHHHHHHHHHHHhcccChHHHHHH
Confidence            445578887666    888889999999999999999999  9  555433 2223333333332222  3455555555


Q ss_pred             HHHhhccchhhHhhhhhheeeeecCcchhHHHHHHHHHHHHHHH-HHHHH-HHhhcCCchhHHHHHHHHHHHHHHhhh
Q 039541          179 RFVAGFFRAPIMTSVIVLLSEMVSKRWRGQVVIIGFTFFSFGLV-SLPAV-AYLSRGSSWKMLYVWTSIPSIVCCIII  254 (521)
Q Consensus       179 r~l~G~~~g~~~~~~~~~i~~~~~~~~rg~~~~~~~~~~~~G~~-i~~~i-~~~~~~~~wr~~f~~~~~~~~~~~~~~  254 (521)
                      .++.|.+..........++.|.+|+++||+++|+.+....+|.. ++|.+ +.+.+..||+..|++.++.+++.++..
T Consensus       354 ~~~~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~~g~~v~g~l~~~~g~~~~f~~~~~~~~~~~~~~  431 (452)
T PRK11273        354 MIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFGWDGGFMVMIGGSILAVILL  431 (452)
T ss_pred             HHHHHHHHHhHHHHHHHHHHHHcChhhhhhHHHHHHHHHHHHHHHhhhhhHHHHHHHhcchHHHHHHHHHHHHHHHHH
Confidence            66666544333333445677999999999999999888778755 47776 888888899999998888777766333

>TIGR00711 efflux_EmrB drug resistance transporter, EmrB/QacA subfamily

Probab=99.10  E-value=3.3e-09  Score=107.63  Aligned_cols=159  Identities=14%  Similarity=0.054  Sum_probs=122.0

Q ss_pred             HHHHHHHhHHhhccCCCccH---HHHHHHHHHHhHhHHHHHHHHHhhcCCchHHHHHHHHHHHHHHHHHhcCCchHHHHH
Q 039541          340 GIGVVYFGLLLGVGNLSFNI---YLSLAFNGLLDIPAYLLTFILIERWSRKSSILTFCILSGTCSAICVAIGDEQEVLQI  416 (521)
Q Consensus       340 ~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~  416 (521)
                      .........|.+.++.+.+.   ........++..++.++.|++.||+|||+.+..+..+..++.++....++.  +...
T Consensus        17 ~~~~~~~~~p~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~--~~l~   94 (485)
T TIGR00711        17 DSTIVNVAIPTIAGDLGSSLSQVQWVITSYMLANAISIPLTGWLAKRFGTRRLFLISTFAFTLGSLLCGVAPNL--ELMI   94 (485)
T ss_pred             HHHHHHHHHHHHHHhcCCChhhhhHHHHHHHHHHHHHHHhHHHHHHHhCcHHHHHHHHHHHHHHHHHHhCcCCH--HHHH
Confidence            33445556777777777654   334455667888899999999999999999999999999888887766544  5667


Q ss_pred             HHHHHHHHHHHHHHHHHHHhhccccCchhhhhhhHHHHHhhhhhhhHHHHHHHhh--ccchhHHHHHHHHHHHHHhHh-h
Q 039541          417 GLELASFFSACVAFNVLLVFGTELFTTCVRNSTTSLVRQAVNLGAAFSPVLISAG--RQNEFLSFGVFGLVVFCFGFF-V  493 (521)
Q Consensus       417 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~p~~~~~~--~~~~~~~~~~~~~~~~~~~~~-~  493 (521)
                      +..++.|++.+...+....++.|.+|++.|+++.++......+|..++|.+.++.  ..++.+.|.+.+.+.++..+. .
T Consensus        95 ~~~~~~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~w~~~f~~~~~~~~~~~~~~~  174 (485)
T TIGR00711        95 IFRVIQGFGGGPLIPLSFSTLLNIYPPEKRGRAMAIWGLTVLVAPALGPTLGGWIIENYHWRWIFLINVPIGIIVVVVAF  174 (485)
T ss_pred             HHHHHHHhhhhhHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHhhhhhccHhHhccCcCceehhhhhhHHHHHHHHHHH
Confidence            7788888888888899999999999999999999999999999999999998863  345566666666555544443 3


Q ss_pred             hccccCC
Q 039541          494 VFLPETI  500 (521)
Q Consensus       494 ~~~~~~~  500 (521)
                      +.+|+++
T Consensus       175 ~~~~~~~  181 (485)
T TIGR00711       175 FILPRDK  181 (485)
T ss_pred             HHcCCcc
Confidence            4455433

This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli.

>TIGR00882 2A0105 oligosaccharide:H+ symporter

Probab=99.10  E-value=9.7e-10  Score=108.24  Aligned_cols=133  Identities=11%  Similarity=0.136  Sum_probs=115.1

Q ss_pred             chhhHHHHHHHHHHhhhhhhhccccCCCCchHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHhhccchhhHhhhhhhee
Q 039541          119 SGLPSSCFFIGCLLGGLALSTLGDSSSLGRKKLLFLSCFAMSITALATIFANNIWIYSTIRFVAGFFRAPIMTSVIVLLS  198 (521)
Q Consensus       119 ~~~~~s~~~lg~~i~~~~~g~l~dr~~~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~  198 (521)
                      .|.+.+...+...++.++.|++.||  +|||+.+.++.++.+++..+...++|.+.+++.++++|++.+........++.
T Consensus       256 ~g~~~~~~~i~~~~~~~~~g~l~~r--~g~~~~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~  333 (396)
T TIGR00882       256 FGYVTTMGELLNALIMFCAPLIINR--IGAKNALLIAGTIMSVRIIGSSFATTALEVVILKMLHAFEVPFLLVGCFKYIT  333 (396)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH--hccchhHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3888888889999999999999999  99999999999999998888888899999999999999998777667777788


Q ss_pred             eeecCcchhHHHHH-HHHHHHHHHHHHHHH-HHhhcCCchhHHHHHHHHHHHHHHhh
Q 039541          199 EMVSKRWRGQVVII-GFTFFSFGLVSLPAV-AYLSRGSSWKMLYVWTSIPSIVCCII  253 (521)
Q Consensus       199 ~~~~~~~rg~~~~~-~~~~~~~G~~i~~~i-~~~~~~~~wr~~f~~~~~~~~~~~~~  253 (521)
                      +..+++.++...+. .+....+|.++++.+ |++.+..||+.+|.+.+++.++..+.
T Consensus       334 ~~~~~~~~at~~~~~~~~~~~lg~~~~~~l~G~l~~~~G~~~~f~~~~~~~~i~~~~  390 (396)
T TIGR00882       334 SQFDVRLSATIYLIGFQFAKQLAMIFLSTLAGNMYDSIGFQGAYLVLGCIVLLFTLI  390 (396)
T ss_pred             HhCCcceEEEeehHHHHHHHHHHHHHHHHhHHHHHHhcccHHHHHHHHHHHHHHHHH
Confidence            88888888877666 677889999999988 78888889999999988887776633

>TIGR00880 2_A_01_02 Multidrug resistance protein

Probab=99.10  E-value=3.1e-09  Score=87.58  Aligned_cols=127  Identities=15%  Similarity=0.124  Sum_probs=101.0

Q ss_pred             HHHHhHhHHHHHHHHHhhcCCchHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHhhccccCchh
Q 039541          366 NGLLDIPAYLLTFILIERWSRKSSILTFCILSGTCSAICVAIGDEQEVLQIGLELASFFSACVAFNVLLVFGTELFTTCV  445 (521)
Q Consensus       366 ~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  445 (521)
                      ..++.+++.++.+++.||+|||+.+..+..+..++.+......+.  +...+..++.+++.+...+....+..|.+|++.
T Consensus         7 ~~~~~~~~~~~~g~~~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~   84 (141)
T TIGR00880         7 YALGQLIYSPLSGLLTDRFGRKPVLLVGLFIFVLSTAMFALSSNI--TVLIIARFLQGFGAAFALVAGAALIADIYPPEE   84 (141)
T ss_pred             ehhHHHHHHhhHHHHHhhcchhHHHHHHHHHHHHHHHHHHHhccH--HHHHHHHHHHHHHHHHHHHhHHHHHHHHCChhh
Confidence            346777889999999999999999998888888877766654433  556667788888888888999999999999999


Q ss_pred             hhhhhHHHHHhhhhhhhHHHHHHHhh--ccchhHHHHHHHHHHHHHhHhhh
Q 039541          446 RNSTTSLVRQAVNLGAAFSPVLISAG--RQNEFLSFGVFGLVVFCFGFFVV  494 (521)
Q Consensus       446 r~~~~~~~~~~~~~g~~~~p~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~  494 (521)
                      |+++.++.+....+|..++|.+.+..  ..++...+.+.+.+.+++.+...
T Consensus        85 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  135 (141)
T TIGR00880        85 RGVALGLMSAGIALGPLLGPPLGGVLAQFLGWRAPFLFLAILALAAFILLA  135 (141)
T ss_pred             hhHHHHHHHHhHHHHHHHhHHhHHHHhcccchHHHHHHHHHHHHHHHHHHh
Confidence            99999999999999999999998863  23455666666666665555443

>PRK15462 dipeptide/tripeptide permease D; Provisional

Probab=99.09  E-value=3.6e-09  Score=104.67  Aligned_cols=148  Identities=13%  Similarity=0.056  Sum_probs=102.0

Q ss_pred             HhHHhhc-cCCCccHHHHH---HHHHHHhHhHHHHHHHHHhhc-CCchHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHH
Q 039541          346 FGLLLGV-GNLSFNIYLSL---AFNGLLDIPAYLLTFILIERW-SRKSSILTFCILSGTCSAICVAIGDEQEVLQIGLEL  420 (521)
Q Consensus       346 ~~~~~~~-~~~~~~~~~~~---~~~~~~~~~~~~~~g~l~dr~-g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~  420 (521)
                      ..++.++ ++.+.+.....   ....+...++.+++|+++||+ |||+.+.++.++..++.+++....... ....+...
T Consensus        30 ~~L~~yL~~~lgls~~~a~~i~~~~~~~~~l~~ligG~LaDRilGrrr~iliG~il~~lg~lll~~~~~~~-~~~~l~l~  108 (493)
T PRK15462         30 ALLILYLTNQLKYDDNHAYELFSAYCSLVYVTPILGGFLADKVLGNRMAVMLGALLMAIGHVVLGASEIHP-SFLYLSLA  108 (493)
T ss_pred             HHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCcHHHHHHHHHHHHHHHHHHHHhhcch-hHHHHHHH
Confidence            3344444 33565544333   334455667888999999999 999999999999888876665422111 22333333


Q ss_pred             HHHHHHHHHHHHHHHhhccccCch--hhhhhhHHHHHhhhhhhhHHHHHHHhh--ccchhHHHHHHHHHHHHHhHhhh
Q 039541          421 ASFFSACVAFNVLLVFGTELFTTC--VRNSTTSLVRQAVNLGAAFSPVLISAG--RQNEFLSFGVFGLVVFCFGFFVV  494 (521)
Q Consensus       421 ~~~~~~~~~~~~~~~~~~~~~~~~--~r~~~~~~~~~~~~~g~~~~p~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~  494 (521)
                      +..++.+...+...++..|.+|++  .|.++.++.+...++|++++|.+.++.  ..++...|.+.++..+++.+.++
T Consensus       109 li~iG~G~~~~~~~alv~elfp~~~~~R~sgf~i~Y~~~nlG~~iap~l~g~L~~~~Gw~~~F~iaaigm~l~li~~~  186 (493)
T PRK15462        109 IIVCGYGLFKSNVSCLLGELYEPTDPRRDGGFSLMYAAGNVGSIIAPIACGYAQEEYSWAMGFGLAAVGMIAGLVIFL  186 (493)
T ss_pred             HHHHhcccccccHHHHHHHHCCCCCccccceehHHHHHHHHHHHHHHHHHHHHHhhhChHHHHHHHHHHHHHHHHHHH
Confidence            444555555566778899999976  689999999999999999999999874  34677777776665555554443

>PRK15403 multidrug efflux system protein MdtM; Provisional

Probab=99.08  E-value=7.2e-09  Score=102.39  Aligned_cols=151  Identities=15%  Similarity=0.072  Sum_probs=112.4

Q ss_pred             HhhccCCCccHHH---HHHHHHHHhHhHHHHHHHHHhhcCCchHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHH
Q 039541          349 LLGVGNLSFNIYL---SLAFNGLLDIPAYLLTFILIERWSRKSSILTFCILSGTCSAICVAIGDEQEVLQIGLELASFFS  425 (521)
Q Consensus       349 ~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~  425 (521)
                      |...++++.+...   ...+..++..++.++.|+++||+|||+++..+..+.+++.+...+..+.  +.+++.-++.|++
T Consensus        40 ~~i~~~~~~~~~~~~~~~s~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~~~~~~~~~a~~~--~~l~~~r~l~Gi~  117 (413)
T PRK15403         40 INVVRDFNADVSLAPASVSLYLAGGMALQWLLGPLSDRIGRRPVLITGALIFTLACAATLFTTSM--TQFLIARFIQGTS  117 (413)
T ss_pred             HHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhhhHHHHHcCchHHHHHHHHHHHHHHHHHHHcCCH--HHHHHHHHHHHHH
Confidence            3344445544332   3344456777889999999999999999999998888888777766544  4566677777777


Q ss_pred             HHHHHHHHHHhhccccCchhhhhhhHHHHHhhhhhhhHHHHHHHhh--ccchhHHHHHHHHHHHHHhHh-hhccccCCC
Q 039541          426 ACVAFNVLLVFGTELFTTCVRNSTTSLVRQAVNLGAAFSPVLISAG--RQNEFLSFGVFGLVVFCFGFF-VVFLPETIG  501 (521)
Q Consensus       426 ~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~p~~~~~~--~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~  501 (521)
                      .+...+.......|.+|++.+++++++.+....+|..++|.+.+..  ..++...|.+.+++.+++.+. .+.+||+++
T Consensus       118 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lg~~l~~~~gw~~~f~~~~~~~~i~~~~~~~~lp~~~~  196 (413)
T PRK15403        118 ICFIATVGYVTVQEAFGQTKGIKLMAIITSIVLVAPIIGPLSGAALMHFVHWKVLFAIIAVMGLIAFVGLLLAMPETVK  196 (413)
T ss_pred             HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhCCCCcc
Confidence            7665667778889999999999999999999999999999988752  346777888877776666554 345677543

>TIGR00881 2A0104 phosphoglycerate transporter family protein

Probab=99.08  E-value=7.4e-10  Score=108.34  Aligned_cols=154  Identities=11%  Similarity=0.011  Sum_probs=114.5

Q ss_pred             HHHhHHhhccCCCccHHH---HHHHHHHHhHhHHHHHHHHHhhcCCchHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHH
Q 039541          344 VYFGLLLGVGNLSFNIYL---SLAFNGLLDIPAYLLTFILIERWSRKSSILTFCILSGTCSAICVAIGDEQEVLQIGLEL  420 (521)
Q Consensus       344 ~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~  420 (521)
                      ..+..|.+.++++.+...   ......++..++.++.|+++||+|||+.+..+..+.+++.++..+..+.  +...+..+
T Consensus        14 ~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~   91 (379)
T TIGR00881        14 FALAMPYLVEEIGLSKTDLGLLLSSFSIAYGISKFVMGSVSDRSNPRVFLPIGLILCAIVNLFFGFSTSL--WVMAALWA   91 (379)
T ss_pred             hhhhhHHHHHHhCCCHhHHHHHHHHHHHHHHhhhhhhhHHHHhhCCeehhHHHHHHHHHHHHHHHHhhhH--HHHHHHHH
Confidence            334456666666665443   3345557777889999999999999999999999998888888776543  56677777


Q ss_pred             HHHHHHHHHHHHHHHhhccccCchhhhhhhHHHHHhhhhhhhHHHH-HHHh--hccchhHHHHHHHHHHHHHhHh-hhcc
Q 039541          421 ASFFSACVAFNVLLVFGTELFTTCVRNSTTSLVRQAVNLGAAFSPV-LISA--GRQNEFLSFGVFGLVVFCFGFF-VVFL  496 (521)
Q Consensus       421 ~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~p~-~~~~--~~~~~~~~~~~~~~~~~~~~~~-~~~~  496 (521)
                      +.+++.+...+...+++.|.+|+++|+.+.++.+....+|..++|. +.+.  ...++...+.+.+++.++..+. .+..
T Consensus        92 ~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  171 (379)
T TIGR00881        92 LNGIFQGMGWPPCGRTVTKWFSRSERGTWVSFWNCSHNVGGGLLPPLVLFGIAELYSWHWVFIVPGIIAIIVSLICFLLL  171 (379)
T ss_pred             HHHhhccccCCchHHHHHHhcCHhhheeeEeehhccchhHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHheee
Confidence            8888888888899999999999999999999999999999999994 4432  2334566676666655554443 3444


Q ss_pred             ccC
Q 039541          497 PET  499 (521)
Q Consensus       497 ~~~  499 (521)
                      +++
T Consensus       172 ~~~  174 (379)
T TIGR00881       172 RDS  174 (379)
T ss_pred             CCC
Confidence            443

>TIGR00898 2A0119 cation transport protein

Probab=99.08  E-value=1.7e-09  Score=110.33  Aligned_cols=139  Identities=17%  Similarity=0.112  Sum_probs=113.6

Q ss_pred             hhhHHHHHHHHHHhhhhhhhccccCCCCchHHHHHHHHHHHHHHHHHhccccH--HHHHHHHHHhhccchhhHhhhhhhe
Q 039541          120 GLPSSCFFIGCLLGGLALSTLGDSSSLGRKKLLFLSCFAMSITALATIFANNI--WIYSTIRFVAGFFRAPIMTSVIVLL  197 (521)
Q Consensus       120 ~~~~s~~~lg~~i~~~~~g~l~dr~~~Grr~~l~~~~~~~~~~~~~~~~~~~~--~~l~~~r~l~G~~~g~~~~~~~~~i  197 (521)
                      .+......+....+.++.+++.||  +|||+.+.++.++.+++.++..+.++.  +..++.-++.+++.+...+....+.
T Consensus       358 ~~~~~~~~~~~i~~~~~~~~l~dr--~grr~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  435 (505)
T TIGR00898       358 YLDLFISGLVELPAKLITLLLIDR--LGRRYTMAASLLLAGVALLLLLFVPVDLYFLRTALAVLGKFGITSAFQMVYLYT  435 (505)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH--hCCHHHHHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            344445567777889999999999  999999999999999998888877654  5555666777788888888999999


Q ss_pred             eeeecCcchhHHHHHHHHHHHHHHHHHHHHHHhhcCCchhHHHHHHHHHHHHHHhhhceeeecch
Q 039541          198 SEMVSKRWRGQVVIIGFTFFSFGLVSLPAVAYLSRGSSWKMLYVWTSIPSIVCCIIIYPFISESP  262 (521)
Q Consensus       198 ~~~~~~~~rg~~~~~~~~~~~~G~~i~~~i~~~~~~~~wr~~f~~~~~~~~~~~~~~~~~~~esp  262 (521)
                      .|.+|++.|++++|+.+....+|.+++|.+.. ....++..++++.++..++.. +..+++||+.
T Consensus       436 ~e~~p~~~r~~~~g~~~~~~~ig~~i~p~i~~-~~~~~~~~~~~~~~~~~~~~~-~~~~~lpet~  498 (505)
T TIGR00898       436 AELYPTVVRNLGVGVCSTMARVGSIISPFLVY-LGEKWLFLPLVLFGGLALLAG-ILTLFLPETK  498 (505)
T ss_pred             cccccHHHHhhhHhHHHHHHHHHHHHHhHHHH-HHHHHHhhHHHHHHHHHHHHH-HHHHcCcCCC
Confidence            99999999999999999999999999999855 445577788888888777776 5556778863

>PF11700 ATG22: Vacuole effluxer Atg22 like; InterPro: IPR024671 Autophagy is a major survival mechanism in which eukaryotes recycle cellular nutrients during stress conditions

Probab=99.08  E-value=1.5e-09  Score=107.52  Aligned_cols=151  Identities=14%  Similarity=0.185  Sum_probs=129.4

Q ss_pred             ceeeecceeeCCccccchhhHHHHHHHHHHhhhhhhhccccCCCCch--HHHHHHHHHHHHHHHHHhc--------cccH
Q 039541          103 TIISDWSLECAGSSILSGLPSSCFFIGCLLGGLALSTLGDSSSLGRK--KLLFLSCFAMSITALATIF--------ANNI  172 (521)
Q Consensus       103 ~i~~~~~~~~~~~~~~~~~~~s~~~lg~~i~~~~~g~l~dr~~~Grr--~~l~~~~~~~~~~~~~~~~--------~~~~  172 (521)
                      ...+++|++..+.    ..+.-+..+..++|++++|++.||  +|.|  ++++++++++.+..+...+        .++.
T Consensus       307 ~a~~~lg~s~~~l----~~~~l~~~i~a~~Ga~~~g~l~~r--~g~k~~~~l~~~l~~~~~i~~~g~~G~~~~~~g~~~~  380 (477)
T PF11700_consen  307 YATEVLGMSTTQL----IVFGLVVQIVAIIGALLFGWLQDR--FGPKTKRTLLISLILWIIIPLYGLFGFWPSFFGLKSP  380 (477)
T ss_pred             HHHHhcCcCHHHH----HHHHHHHHHHHHHHHHHHHHHHHH--hCCchhHHHHHHHHHHHHHHHHHHHHhhhcccCcccH
Confidence            4456899999776    777788888999999999999999  9999  8999988888776666665        6788


Q ss_pred             HHHHHHHHHhhccchhhHhhhhhheeeeecCcchhHHHHHHHHHHHHHHHHHHHH-HHhhcCCc-hhHHHHHHHHHHHHH
Q 039541          173 WIYSTIRFVAGFFRAPIMTSVIVLLSEMVSKRWRGQVVIIGFTFFSFGLVSLPAV-AYLSRGSS-WKMLYVWTSIPSIVC  250 (521)
Q Consensus       173 ~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~rg~~~~~~~~~~~~G~~i~~~i-~~~~~~~~-wr~~f~~~~~~~~~~  250 (521)
                      +.+.+.-++.|+..|...+...++.+|+.|+++.+..+|++....-....+||++ |.+.+..| -|+.+....++.++.
T Consensus       381 ~~f~~~a~~~G~~~G~~qs~sRs~~~~LiP~g~e~efFgly~i~gk~ss~lGPll~g~i~~~tg~~r~g~~~l~~lf~~g  460 (477)
T PF11700_consen  381 WEFWVLAVLIGLFMGGIQSASRSLFSRLIPPGREAEFFGLYAITGKASSWLGPLLFGLITDATGSQRYGFLFLLVLFLIG  460 (477)
T ss_pred             HHHHHHHHHHHHHhhhHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHH
Confidence            8999999999999999999999999999999999999999999999999999998 77766544 888888888777777


Q ss_pred             Hhhhceeeec
Q 039541          251 CIIIYPFISE  260 (521)
Q Consensus       251 ~~~~~~~~~e  260 (521)
                      + ++..+++.
T Consensus       461 l-~ll~~v~~  469 (477)
T PF11700_consen  461 L-ILLFFVDV  469 (477)
T ss_pred             H-HHHhhccc
Confidence            7 44455554

Atg22, Avt3 and Avt4 are partially redundant vacuolar effluxers, which mediate the efflux of leucine and other amino acids resulting from autophagy []. This family also includes other transporter proteins.

>PRK11043 putative transporter; Provisional

Probab=99.07  E-value=1.5e-08  Score=100.11  Aligned_cols=149  Identities=14%  Similarity=0.010  Sum_probs=109.1

Q ss_pred             HhhccCCCccHHHHH---HHHHHHhHhHHHHHHHHHhhcCCchHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHH
Q 039541          349 LLGVGNLSFNIYLSL---AFNGLLDIPAYLLTFILIERWSRKSSILTFCILSGTCSAICVAIGDEQEVLQIGLELASFFS  425 (521)
Q Consensus       349 ~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~  425 (521)
                      +.+.++.+.+.....   .+..++..++.++.|+++||+|||+.+..+..+..++.+...+.++.  +...+..++.|++
T Consensus        30 ~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~--~~l~~~~~l~G~~  107 (401)
T PRK11043         30 KAIQADLQTSASAVSASLSLFLAGFALGQLLWGPLSDRYGRKPVLLAGLSLFALGSLGMLWVESA--AQLLVLRFVQAVG  107 (401)
T ss_pred             HHHHHHHCCCHHHHHHHHHHHHHHHHHHHHhhhhHHhhcCCcHHHHHHHHHHHHHHHHHHHhcCH--HHHHHHHHHHHhh
Confidence            334455565544433   44456677899999999999999999999988888887777665443  4555666777777


Q ss_pred             HHHHHHHHHHhhccccCchhhhhhhHHHHHhhhhhhhHHHHHHHhh--ccchhHHHHHHHHHHHHHhHhhhccccC
Q 039541          426 ACVAFNVLLVFGTELFTTCVRNSTTSLVRQAVNLGAAFSPVLISAG--RQNEFLSFGVFGLVVFCFGFFVVFLPET  499 (521)
Q Consensus       426 ~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~p~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~  499 (521)
                      .+...+....+..|.+|++.++...+..+....++..++|.+.++.  ..++...+.+.+++.++..+..+.+++.
T Consensus       108 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~  183 (401)
T PRK11043        108 VCSAAVIWQALVIDRYPAQKANRVFATIMPLVALSPALAPLLGAWLLNHFGWQAIFATLFAITLLLILPTLRLKPS  183 (401)
T ss_pred             hHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHcCCC
Confidence            7777777778899999999989998888888888999999988763  3456677777776666655555445443

>PRK11010 ampG muropeptide transporter; Validated

Probab=99.07  E-value=2e-08  Score=101.27  Aligned_cols=180  Identities=12%  Similarity=0.013  Sum_probs=125.3

Q ss_pred             HhccHHHHHHHHHHHHHHHHHHHHHHhHHhhccCCCccHHHHHHHHHHHh-HhHHHHHHHHHhhc-----CCchH-HHHH
Q 039541          321 LFNRKWALRRLLTIMALAFGIGVVYFGLLLGVGNLSFNIYLSLAFNGLLD-IPAYLLTFILIERW-----SRKSS-ILTF  393 (521)
Q Consensus       321 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~g~l~dr~-----g~~~~-~~~~  393 (521)
                      ..++++....+.+.+............+|.++++.+.+....+....++. .++.++.+.++||+     |||+. +..+
T Consensus         8 ~~~~~~~~~~~~l~~~~gl~~~~~~~~l~~~l~~~g~~~~~ig~~~~~~~~~~~~~l~gpl~Dr~~~~~~Grrr~~ll~~   87 (491)
T PRK11010          8 IFQQPNSAILLILGFASGLPLALTSGTLQAWMTVENIDLKTIGFFSLVGQAYVFKFLWSPLMDRYTPPFLGRRRGWLLAT   87 (491)
T ss_pred             HHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHcccccCCCCchHHHHHH
Confidence            33444444444444444444555556678888887877655555432222 26889999999999     98885 5566


Q ss_pred             HHHHHHHHHHHHhcCCch-HHHHHHHHHHHHHHHHHHHHHHHHhhccccCchhhhhhhHHHHHhhhhhhhHHHHHHHhh-
Q 039541          394 CILSGTCSAICVAIGDEQ-EVLQIGLELASFFSACVAFNVLLVFGTELFTTCVRNSTTSLVRQAVNLGAAFSPVLISAG-  471 (521)
Q Consensus       394 ~~~~~i~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~p~~~~~~-  471 (521)
                      .+..+++...+.+..... .+...+..++.+++.+...+...++..|.+|+++|+.+.++......+|..+++.+.++. 
T Consensus        88 ~i~~~~~~~~~a~~~~~~~l~~l~~~~~l~~~~~a~~~i~~~a~~~~~~~~~~rg~~~~i~~~g~~lG~llg~~l~~~l~  167 (491)
T PRK11010         88 QLLLLVAIAAMGFLEPGTQLRWLAALAVVIAFCSASQDIVFDAWKTDVLPAEERGAGAAISVLGYRLAMLVSGGLALWLA  167 (491)
T ss_pred             HHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            666666666665554322 245566667777777778888999999999999999999999999999999998877652 


Q ss_pred             c--cchhHHHHHHHHHHHHHhHhhhccccCC
Q 039541          472 R--QNEFLSFGVFGLVVFCFGFFVVFLPETI  500 (521)
Q Consensus       472 ~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~  500 (521)
                      .  .++...|.+.+++.++..+..+.+||+.
T Consensus       168 ~~~~GWr~~f~i~a~l~ll~~l~~~~~~e~~  198 (491)
T PRK11010        168 DRYLGWQGMYWLMAALLIPCIIATLLAPEPT  198 (491)
T ss_pred             hcccCHHHHHHHHHHHHHHHHHHHHhcCCCc
Confidence            2  3678888888877766655555566653

>PRK14995 methyl viologen resistance protein SmvA; Provisional

Probab=99.06  E-value=1.4e-08  Score=102.84  Aligned_cols=156  Identities=15%  Similarity=-0.021  Sum_probs=117.2

Q ss_pred             HHHHHhHHhhccCCCccHH---HHHHHHHHHhHhHHHHHHHHHhhcCCchHHHHHHHHHHHHHHHHHhcCCchHHHHHHH
Q 039541          342 GVVYFGLLLGVGNLSFNIY---LSLAFNGLLDIPAYLLTFILIERWSRKSSILTFCILSGTCSAICVAIGDEQEVLQIGL  418 (521)
Q Consensus       342 ~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~  418 (521)
                      +......|.+.++++.+..   +......++...+.+..|+++||+|||+.+..+..+..++.++..+.++.  +..++.
T Consensus        23 tiv~~a~p~i~~~l~~s~~~~~~~~~~~~l~~~~~~~~~G~l~D~~Grk~~l~~~~~~~~~~~~~~~~a~~~--~~li~~  100 (495)
T PRK14995         23 TVLHVAAPTLSMTLGASGNELLWIIDIYSLVMAGMVLPMGALGDRIGFKRLLMLGGTLFGLASLAAAFSPTA--SWLIAT  100 (495)
T ss_pred             HHHHHHHHHHHHHhCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHcCCH--HHHHHH
Confidence            4555667777777775443   33344556666778899999999999999999999999998888876554  566667


Q ss_pred             HHHHHHHHHHHHHHHHHhhcccc-CchhhhhhhHHHHHhhhhhhhHHHHHHHhh--ccchhHHHHHHHHHHHHHhHh-hh
Q 039541          419 ELASFFSACVAFNVLLVFGTELF-TTCVRNSTTSLVRQAVNLGAAFSPVLISAG--RQNEFLSFGVFGLVVFCFGFF-VV  494 (521)
Q Consensus       419 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~r~~~~~~~~~~~~~g~~~~p~~~~~~--~~~~~~~~~~~~~~~~~~~~~-~~  494 (521)
                      -++.|++.+...+.......+.+ |++.|+++.|+......+|..++|.+.++.  ..++.+.|.+...+.++..++ .+
T Consensus       101 r~l~G~g~~~~~~~~~~~l~~~~~~~~~r~~~~g~~~~~~~~g~~~gp~lgg~l~~~~gwr~~f~i~~~~~~~~~~l~~~  180 (495)
T PRK14995        101 RALLAIGAAMIVPATLAGIRATFTEEKQRNMALGVWAAVGSGGAAFGPLVGGILLEHFYWGSVFLINVPIVLVVMGLTAR  180 (495)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCChHHHHHHHHHHHHHHHHHHHH
Confidence            78888888888777777666655 789999999999999999999999999873  345677777766555554443 34


Q ss_pred             ccccC
Q 039541          495 FLPET  499 (521)
Q Consensus       495 ~~~~~  499 (521)
                      .+|+.
T Consensus       181 ~l~~~  185 (495)
T PRK14995        181 YVPRQ  185 (495)
T ss_pred             hCCCC
Confidence            55654

>PRK15402 multidrug efflux system translocase MdfA; Provisional

Probab=99.05  E-value=1.2e-08  Score=100.93  Aligned_cols=152  Identities=16%  Similarity=-0.005  Sum_probs=111.3

Q ss_pred             HHhhccCCCccHHHH---HHHHHHHhHhHHHHHHHHHhhcCCchHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHH
Q 039541          348 LLLGVGNLSFNIYLS---LAFNGLLDIPAYLLTFILIERWSRKSSILTFCILSGTCSAICVAIGDEQEVLQIGLELASFF  424 (521)
Q Consensus       348 ~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~  424 (521)
                      .+.+.++++.+....   .....++..++.++.|+++||+|||+.+..+..+.+++.+.....++.  +..++..++.|+
T Consensus        36 ~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~--~~l~~~~~l~G~  113 (406)
T PRK15402         36 MLAVVEDFNAGAEWVPTSMTAYLAGGMFLQWLLGPLSDRIGRRPVMLAGVAFFILTCLAILLAQSI--EQFTLLRFLQGI  113 (406)
T ss_pred             hHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHccH--HHHHHHHHHHHh
Confidence            344556666654433   344556777888999999999999999999988888887777665433  455666677777


Q ss_pred             HHHHHHHHHHHhhccccCchhhhhhhHHHHHhhhhhhhHHHHHHHh--hccchhHHHHHHHHHHHHHhHh-hhccccCCC
Q 039541          425 SACVAFNVLLVFGTELFTTCVRNSTTSLVRQAVNLGAAFSPVLISA--GRQNEFLSFGVFGLVVFCFGFF-VVFLPETIG  501 (521)
Q Consensus       425 ~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~p~~~~~--~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~  501 (521)
                      +.+...+.......|.+|++.|.++.++......++..++|.+.+.  ...++...+.+.+++.++..+. .+..||+++
T Consensus       114 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~  193 (406)
T PRK15402        114 GLCFIGAVGYAAIQESFEEADAIKITALMANVALLAPLLGPLVGAALIHVLPWRGMFVLFAALAALSFFGLWRAMPETAG  193 (406)
T ss_pred             HhhhHHHHHHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCccHHHHHHHHHHHHHHHHHHHhCCCCCc
Confidence            7777778888889999999999999998888888888899988775  2345667777777766655543 344566543

>TIGR00885 fucP L-fucose:H+ symporter permease

Probab=99.04  E-value=1.4e-08  Score=100.05  Aligned_cols=129  Identities=8%  Similarity=-0.092  Sum_probs=101.1

Q ss_pred             HHHHHhHHhhccCCCccHHHHH---HHHHHHhHhHHHHHHHHHhhcCCchHHHHHHHHHHHHHHHHHhcCC-chHHHHHH
Q 039541          342 GVVYFGLLLGVGNLSFNIYLSL---AFNGLLDIPAYLLTFILIERWSRKSSILTFCILSGTCSAICVAIGD-EQEVLQIG  417 (521)
Q Consensus       342 ~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~i~~~~~~~~~~-~~~~~~~~  417 (521)
                      +...-..|.+.++.+.+....+   ....++.+++++..|++.||+|||+.+..+..+.+++.+++..... .+.+...+
T Consensus        20 ~~~~~l~~~~~~~~~~s~~~~g~l~s~~~~g~~i~~~~~g~l~~r~G~r~~~~~g~~l~~~g~~l~~~~~~~~~~~~~l~   99 (410)
T TIGR00885        20 DITNPMVPQFQQAFTLTAFQAALVQSAFYGGYFIMAIPAAIFMKKLSYKAGILLGLFLYALGAFLFWPAAEIMNYTLFLV   99 (410)
T ss_pred             HhHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHhhccHHHHHH
Confidence            3333445666677776654433   4455777889999999999999999999999999988877644322 22256667


Q ss_pred             HHHHHHHHHHHHHHHHHHhhccccCchhhhhhhHHHHHhhhhhhhHHHHHHHh
Q 039541          418 LELASFFSACVAFNVLLVFGTELFTTCVRNSTTSLVRQAVNLGAAFSPVLISA  470 (521)
Q Consensus       418 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~p~~~~~  470 (521)
                      ..++.|++.+...+....+..+..|++.|++..++.+....+|..++|.+.+.
T Consensus       100 ~~~l~G~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lG~~~g~~i~~~  152 (410)
T TIGR00885       100 GLFILTAGLGFLETAANPYILVMGPESTATRRLNLAQSFNPFGSIIGMVVAQQ  152 (410)
T ss_pred             HHHHHHhhHHHHHhhhhHHHHHHCCHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            77888999999999888999999999999999999999999999999988763

This family describes the L-fucose permease in bacteria. L-fucose(6-deoxy-L-galactose) is a monosaccharide found in glycoproteins and cell wall polysaccharides. L-fucose is used in bacteria through an inducible pathway mediated by atleast four enzymes: a permease, isomerase, kinase and an aldolase which are encoded by fucP, fucI, fucK, fucA respectively. The fuc genes belong to a regulon comprising of four linked operons: fucO, fucA, fucPIK and fucR. The positive regulator is encoded by fucR, whose protein responds to fuculose-1-phosphate, which acts as an effector.

>PRK11102 bicyclomycin/multidrug efflux system; Provisional

Probab=99.04  E-value=7.7e-09  Score=101.22  Aligned_cols=151  Identities=16%  Similarity=0.110  Sum_probs=114.6

Q ss_pred             HHhhccCCCccHHHH---HHHHHHHhHhHHHHHHHHHhhcCCchHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHH
Q 039541          348 LLLGVGNLSFNIYLS---LAFNGLLDIPAYLLTFILIERWSRKSSILTFCILSGTCSAICVAIGDEQEVLQIGLELASFF  424 (521)
Q Consensus       348 ~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~  424 (521)
                      .|.+.++.+.+....   .....++..++.++.|++.||+|||+.+..+.++.+++.+.+....+.  +...+..++.++
T Consensus        14 ~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~i~~~~~~~~~~~--~~~~~~~~l~g~   91 (377)
T PRK11102         14 LPVIAADFGVSAGSVQMTLSAYILGFAIGQLFYGPMADSFGRKPVILGGTLVFALAAVACALAQTI--DQLIYMRFLHGL   91 (377)
T ss_pred             HHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhhchHHhhcCChHHHHHHHHHHHHHHHHHHHHccH--HHHHHHHHHHHH
Confidence            355555666554333   344556777899999999999999999999999988888887766544  456667778888


Q ss_pred             HHHHHHHHHHHhhccccCchhhhhhhHHHHHhhhhhhhHHHHHHHhh--ccchhHHHHHHHHHHHHHhHh-hhccccCC
Q 039541          425 SACVAFNVLLVFGTELFTTCVRNSTTSLVRQAVNLGAAFSPVLISAG--RQNEFLSFGVFGLVVFCFGFF-VVFLPETI  500 (521)
Q Consensus       425 ~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~p~~~~~~--~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~  500 (521)
                      +.+...+....+..|.+|++.|+++.++.+....+|..++|.+.+..  ..++...+.+.+++.++..+. .+.++|++
T Consensus        92 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  170 (377)
T PRK11102         92 AAAAASVVINALMRDMFPKEEFSRMMSFVTLVMTIAPLLAPIIGGWLLVWFSWHAIFWVLALAAILAAALVFFFIPETL  170 (377)
T ss_pred             HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChHHHHHHHHHHHHHHHHHHHHhCCccC
Confidence            88888888899999999999999999999999999999999988753  235666777666666555443 34556543

>PF06813 Nodulin-like: Nodulin-like; InterPro: IPR010658 This entry represents a conserved region within plant nodulin-like proteins and a number of uncharacterised proteins

Probab=99.03  E-value=9.4e-10  Score=98.11  Aligned_cols=153  Identities=19%  Similarity=0.236  Sum_probs=119.4

Q ss_pred             CcceeeecceeeCCccccchhhHHHHHHHHHHhhhhhhhccccCCCCchHHHHHHHHHHHHHHHHHhcc-------ccHH
Q 039541          101 DTTIISDWSLECAGSSILSGLPSSCFFIGCLLGGLALSTLGDSSSLGRKKLLFLSCFAMSITALATIFA-------NNIW  173 (521)
Q Consensus       101 ~~~i~~~~~~~~~~~~~~~~~~~s~~~lg~~i~~~~~g~l~dr~~~Grr~~l~~~~~~~~~~~~~~~~~-------~~~~  173 (521)
                      -|++++.+|++.+|.    ..+.++..+|..+| ++.|.+.|+  +|.+.++.+|.+...+|..+...+       .++|
T Consensus        25 S~~Lk~~l~~sq~~l----~~l~~~~~~G~~~G-~~~G~l~d~--~gp~~~l~iG~~~~~~GY~~~~l~~~~~i~~~~~~   97 (250)
T PF06813_consen   25 SPQLKSRLGYSQSQL----NTLSTAGDIGSYFG-ILAGLLYDR--FGPWVVLLIGAVLGFVGYGLLWLAVSGRIPSLPVW   97 (250)
T ss_pred             hHHHHHHhCCCHHHH----HHHHHHHHHHhhcc-HHHHHHHHh--cchHHHHHHHHHHHHHHHHHHHHHHhCccCccchH
Confidence            589999999999777    99999999998875 889999999  999999999999999999887654       4678


Q ss_pred             HHHHHHHHhhccchhhHhhhhhheeeeecCcchhHHHHHHHHHHHHHHHHHHHH-HHhhcCCchhHHHHHHHHHHHHHHh
Q 039541          174 IYSTIRFVAGFFRAPIMTSVIVLLSEMVSKRWRGQVVIIGFTFFSFGLVSLPAV-AYLSRGSSWKMLYVWTSIPSIVCCI  252 (521)
Q Consensus       174 ~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~rg~~~~~~~~~~~~G~~i~~~i-~~~~~~~~wr~~f~~~~~~~~~~~~  252 (521)
                      .+.+..++.|.+.+....+......+.+| ++||++.|+.-...+++..+-..+ ..+.++..-+..+.+...+.++.+ 
T Consensus        98 ~~~~~~~l~~~s~~~~~ta~lvt~~~NFP-~~RG~vvgilk~~~GLSaai~t~i~~~~f~~~~~~fll~la~~~~~v~l-  175 (250)
T PF06813_consen   98 LMCLFLFLGGNSSCWFNTASLVTCVRNFP-RSRGTVVGILKGFFGLSAAIFTQIYSAFFGDDPSSFLLFLAVLPAVVCL-  175 (250)
T ss_pred             HHHHHHHHHcccHHHhhhHHHHHHHHhCc-cccCceehhhhHHHHhHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHH-
Confidence            88888899999887777777777778887 689999999999999988876655 555554344555444444444444 


Q ss_pred             hhceeeecch
Q 039541          253 IIYPFISESP  262 (521)
Q Consensus       253 ~~~~~~~esp  262 (521)
                      +...+++..|
T Consensus       176 ~~~~~vr~~~  185 (250)
T PF06813_consen  176 VAMFFVRPVP  185 (250)
T ss_pred             HHhhheeccC
Confidence            4445555443

>PRK10406 alpha-ketoglutarate transporter; Provisional

Probab=99.01  E-value=3.4e-08  Score=98.38  Aligned_cols=132  Identities=13%  Similarity=0.048  Sum_probs=99.4

Q ss_pred             HHhHhHHHHHHHHHhhcCCchHHHHHHHHHHHHHHHHHhcCCchH------HHHHHHHHHHHHHHHHHHHHHHHhhcccc
Q 039541          368 LLDIPAYLLTFILIERWSRKSSILTFCILSGTCSAICVAIGDEQE------VLQIGLELASFFSACVAFNVLLVFGTELF  441 (521)
Q Consensus       368 ~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~i~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  441 (521)
                      ++..+|.++.|++.||+|||+.+..+..+.+++.+...+.++...      ..+.+.-++.|++.+..++...+++.|.+
T Consensus        74 ~~~~ig~~~~G~l~Dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~G~g~g~~~~~~~~~i~e~~  153 (432)
T PRK10406         74 LMRPIGGWLFGRIADKHGRKKSMLISVCMMCFGSLVIACLPGYETIGTWAPALLLLARLFQGLSVGGEYGTSATYMSEVA  153 (432)
T ss_pred             HHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHhhcCCchhHHHHHHHHHHHHHHHHHhhhhhhHhhHHHHHHHhC
Confidence            455589999999999999999999999999999888877665421      24566677888888999999999999999


Q ss_pred             CchhhhhhhHHHHHhhhhhhhHHHHHHHh----------hccchhHHHHHHHHHHHHHhHhhhccccC
Q 039541          442 TTCVRNSTTSLVRQAVNLGAAFSPVLISA----------GRQNEFLSFGVFGLVVFCFGFFVVFLPET  499 (521)
Q Consensus       442 ~~~~r~~~~~~~~~~~~~g~~~~p~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  499 (521)
                      |+++|+.+.++.......|.++++.+...          ...++...|.+.++..++...+...++|.
T Consensus       154 p~~~rg~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~gWr~~F~i~~~~~ll~~~~~~~~~e~  221 (432)
T PRK10406        154 VEGRKGFYASFQYVTLIGGQLLALLVVVVLQQTLEDAELREWGWRIPFALGAVLAVVALWLRRQLDET  221 (432)
T ss_pred             CCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHhccchHHHHHHHHHHHHHHHHHHhcCCCC
Confidence            99999999988877767776666654332          13567778877666655543333334443

>PRK15075 citrate-proton symporter; Provisional

Probab=99.00  E-value=2.2e-09  Score=106.94  Aligned_cols=130  Identities=18%  Similarity=0.159  Sum_probs=93.1

Q ss_pred             cce-eeecceeeCCccccchhhHHHHHHHHHHhhhhhhhccccCCCCchHHHHHHHHHHHHHHHH----HhccccHHHHH
Q 039541          102 TTI-ISDWSLECAGSSILSGLPSSCFFIGCLLGGLALSTLGDSSSLGRKKLLFLSCFAMSITALA----TIFANNIWIYS  176 (521)
Q Consensus       102 ~~i-~~~~~~~~~~~~~~~~~~~s~~~lg~~i~~~~~g~l~dr~~~Grr~~l~~~~~~~~~~~~~----~~~~~~~~~l~  176 (521)
                      |.+ ++.+|.+.++.    ++....+.++..++.+++|+++||  +|||++++.+.++..+..+.    ....+++..+.
T Consensus       262 p~~l~~~~g~~~~~~----~~~~~~~~~~~~~~~~~~g~l~Dr--~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  335 (434)
T PRK15075        262 PTFGKTVLHLSAADS----LLVTLCVGVSNFIWLPIGGALSDR--IGRRPVLIAFTVLAILTAYPALSWLVAAPSFARML  335 (434)
T ss_pred             HHHHHHhcCCCHHHH----HHHHHHHHHHHHHHHHHHHHHHHH--hcchHHHHHHHHHHHHHHHHHHHHHHcCCchHHHH
Confidence            443 44578887665    888888889999999999999999  99999988765544332211    11234454555


Q ss_pred             HHHHHhhccchhhHhhhhhheeeeecCcchhHHHHHHHH-HHHHHHHHHHHH-HHhhcCCchh
Q 039541          177 TIRFVAGFFRAPIMTSVIVLLSEMVSKRWRGQVVIIGFT-FFSFGLVSLPAV-AYLSRGSSWK  237 (521)
Q Consensus       177 ~~r~l~G~~~g~~~~~~~~~i~~~~~~~~rg~~~~~~~~-~~~~G~~i~~~i-~~~~~~~~wr  237 (521)
                      +..++.|++.+...+....++.|.+|+++|+.++++... +..++..++|.+ +.+.+..|++
T Consensus       336 ~~~~~~~~~~g~~~~~~~~~~~e~~p~~~rg~~~g~~~~~~~~~~g~~~p~~~g~i~~~~g~~  398 (434)
T PRK15075        336 AVELWLSFLYGSYNGAMVVALTEVMPAEVRTAGFSLAYSLATAIFGGFTPAISTWLIHVTGDK  398 (434)
T ss_pred             HHHHHHHHHHHHHHhhHHHHHHHHCCCCccchheeHHHHHHHHHHhhhHHHHHHHHHHhcCCc
Confidence            556666777777677777889999999999999998644 444456667777 7777777754

>PRK11902 ampG muropeptide transporter; Reviewed

Probab=99.00  E-value=3.6e-08  Score=97.27  Aligned_cols=166  Identities=13%  Similarity=0.000  Sum_probs=119.0

Q ss_pred             HHHHHHHHHHHHhHHhhccCCCccHHHHHHHHHHH-hHhHHHHHHHHHhhc-----CCch-HHHHHHHHHHHHHHHHHhc
Q 039541          335 MALAFGIGVVYFGLLLGVGNLSFNIYLSLAFNGLL-DIPAYLLTFILIERW-----SRKS-SILTFCILSGTCSAICVAI  407 (521)
Q Consensus       335 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~g~l~dr~-----g~~~-~~~~~~~~~~i~~~~~~~~  407 (521)
                      +.......+....+|.++++.|.+....+.+..+. -.+..++.|+++||+     |||| .+.++..+.+++...+.+.
T Consensus         9 ~~~~~~~~~~~~~~~~~l~~~g~~~~~ig~~~~~~~~~~~~~l~g~~~Dr~~~~~~g~rr~~l~~~~~~~~l~~~~l~~~   88 (402)
T PRK11902          9 FASGLPLALTSGTLQAWMTVEGLDIQTIGFFSLVGQAYIFKFLWAPLMDRYTPPLLGRRRGWLLLTQVGLAASIAAMAFC   88 (402)
T ss_pred             HHHhhhHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHcccccCCCcchhHHHHHHHHHHHHHHHHHhc
Confidence            33444556666778999999898877666443322 247788999999999     7775 6777778887777776665


Q ss_pred             CCch-HHHHHHHHHHHHHHHHHHHHHHHHhhccccCchhhhhhhHHHHHhhhhhhhHHHHHHHhh-c--cchhHHHHHHH
Q 039541          408 GDEQ-EVLQIGLELASFFSACVAFNVLLVFGTELFTTCVRNSTTSLVRQAVNLGAAFSPVLISAG-R--QNEFLSFGVFG  483 (521)
Q Consensus       408 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~p~~~~~~-~--~~~~~~~~~~~  483 (521)
                      +... .+...+..++.+++.....+...+++.|.+|+++|+++.++......+|..+++.+.+.. .  .++...|.+.+
T Consensus        89 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~al~~~~~~~~~r~~~~~~~~~g~~~g~i~g~~l~~~l~~~~~gw~~~f~i~a  168 (402)
T PRK11902         89 PPHAALWPLAGLAVLVAFLSASQDIVFDAYSTDVLHPEERGAGAAVKVLGYRLAMLVSGGLALWLADRVLGWGNTYLLMA  168 (402)
T ss_pred             CccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhhhhHHHHHHHHHHHHHHHHHhHHHHHHHhcccCHHHHHHHHH
Confidence            4322 244455555566677777788999999999999999999999988888988888877642 2  36777787777


Q ss_pred             HHHHHHhHhhhccccCC
Q 039541          484 LVVFCFGFFVVFLPETI  500 (521)
Q Consensus       484 ~~~~~~~~~~~~~~~~~  500 (521)
                      ++.++..+..+..+|++
T Consensus       169 ~~~l~~~l~~~~~~e~~  185 (402)
T PRK11902        169 GLMLAGALTTLWAPEPE  185 (402)
T ss_pred             HHHHHHHHHHHhcCCCc
Confidence            76666555555566553

>KOG0569 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]

Probab=99.00  E-value=3.1e-09  Score=103.57  Aligned_cols=153  Identities=18%  Similarity=0.192  Sum_probs=113.3

Q ss_pred             cceeeecceeeCCccccchhhHHHHHHHHHHhhhhhhhccccCCCCchHHHHHHHHHHHHHHHHHhccc----cH--H--
Q 039541          102 TTIISDWSLECAGSSILSGLPSSCFFIGCLLGGLALSTLGDSSSLGRKKLLFLSCFAMSITALATIFAN----NI--W--  173 (521)
Q Consensus       102 ~~i~~~~~~~~~~~~~~~~~~~s~~~lg~~i~~~~~g~l~dr~~~Grr~~l~~~~~~~~~~~~~~~~~~----~~--~--  173 (521)
                      ..+-++-|++.+++    .+......+...+..+.+..+.||  +|||+.++++..+..+..+++....    ..  |  
T Consensus       294 t~i~~~aG~~~~~a----~~an~~~g~v~~~~t~~~~~lid~--~gRRpLll~~~~~~~~~~~~~~~~~~l~~~~~~~~~  367 (485)
T KOG0569|consen  294 TSIFKTAGFTPEEA----QYANLGIGIVNLLSTLVSPFLIDR--LGRRPLLLISLSLMAVALLLMSIALFLSNSFGSWLS  367 (485)
T ss_pred             HHHHHHcCCCHHHH----HHHHHHHHHHHHHHHHHHHHHHHh--cCCcHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHH
Confidence            45667778888776    888888888888999999999999  9999999999999999888876542    11  1  


Q ss_pred             -HHHHHHHH--hhccchhhHhhhhhheeeeecCcchhHHHHHHHHHHHHHHHHHHHH-HHhhcCCchhHHHHHHHHHHHH
Q 039541          174 -IYSTIRFV--AGFFRAPIMTSVIVLLSEMVSKRWRGQVVIIGFTFFSFGLVSLPAV-AYLSRGSSWKMLYVWTSIPSIV  249 (521)
Q Consensus       174 -~l~~~r~l--~G~~~g~~~~~~~~~i~~~~~~~~rg~~~~~~~~~~~~G~~i~~~i-~~~~~~~~wr~~f~~~~~~~~~  249 (521)
                       ..+++.++  ..++.| .-|...-+.+|.+|++.|..++++......+...+-... -.+-+..|= +.|.+..+++++
T Consensus       368 y~~i~~~~~~~~~f~~G-~gpi~~fi~aELf~~~~R~aa~s~~~~~~w~~~fiv~~~fp~l~~~~g~-~~filF~i~~~~  445 (485)
T KOG0569|consen  368 YLCIAAIFLFIISFAIG-PGPIPWFIGAELFPQSARSAAQSVATAVNWLSNFIVGFAFPPLQNVIGP-YVFILFVIPLAI  445 (485)
T ss_pred             HHHHHHHHHHHHhhhcC-CCchhHHHHHHhCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-hhhHHHHHHHHH
Confidence             12333333  333333 457778889999999999999999887777766554333 333332333 777788888888


Q ss_pred             HHhhhceeeecch
Q 039541          250 CCIIIYPFISESP  262 (521)
Q Consensus       250 ~~~~~~~~~~esp  262 (521)
                      ..+.+++.+|||.
T Consensus       446 ~~i~~~~~lPETk  458 (485)
T KOG0569|consen  446 FLIYLYRYLPETK  458 (485)
T ss_pred             HHHHHHHhCcccC
Confidence            8889999999984

>PF02487 CLN3: CLN3 protein; InterPro: IPR003492 Batten's disease, the juvenile variant of neuronal ceroid lipofuscionosis (NCL), is a recessively inherited disorder affecting children of 5-10 years of age

Probab=98.99  E-value=2.9e-07  Score=87.52  Aligned_cols=321  Identities=11%  Similarity=-0.045  Sum_probs=172.4

Q ss_pred             hhhHHHHHHHHHHhhhhhhhccccCCCCchHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHhhccchhhHhhhhhheee
Q 039541          120 GLPSSCFFIGCLLGGLALSTLGDSSSLGRKKLLFLSCFAMSITALATIFANNIWIYSTIRFVAGFFRAPIMTSVIVLLSE  199 (521)
Q Consensus       120 ~~~~s~~~lg~~i~~~~~g~l~dr~~~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~  199 (521)
                      +.+.-+-.+...+.-+.+.+..+|  ...+.=..+..++..++.++.++++|.+.-+++-.+.+++.|........+.. 
T Consensus        62 ~~Vlladi~P~l~~Kl~aP~fi~~--v~y~~Ri~~~~~l~~~g~l~va~~~~v~~~l~Gv~las~ssg~GE~tfL~lt~-  138 (402)
T PF02487_consen   62 GAVLLADILPSLLVKLIAPFFIHR--VPYWIRILICVALSAAGMLLVAFSPSVWVRLLGVVLASLSSGLGEVTFLSLTH-  138 (402)
T ss_pred             hHHHHHHHHHHHHHHHHhHhhhhh--ccchHHHHHHHHHHHHHHhheeeccchhHHHHHHHHHhhhhhhhHHHHHHHHH-
Confidence            556666667777777888888888  76554455666778889999999999999999999999999998888888754 


Q ss_pred             eecCcchhHHHHHHHHHHHHHHHHHHHHHHhhcCCc--hhHHHHHHHHHHHHHHhhhceeeecchhHHHhcCCHHHHHHH
Q 039541          200 MVSKRWRGQVVIIGFTFFSFGLVSLPAVAYLSRGSS--WKMLYVWTSIPSIVCCIIIYPFISESPRWLFIHGHEAEAMAV  277 (521)
Q Consensus       200 ~~~~~~rg~~~~~~~~~~~~G~~i~~~i~~~~~~~~--wr~~f~~~~~~~~~~~~~~~~~~~esp~~~~~~~~~~~~~~~  277 (521)
                      .+++    ...+-+..+.+.+.++|+..-..+...+  -|..+.+...+.++..+..++.+|.++..    ...++    
T Consensus       139 ~y~~----~~l~~wssGTG~aGl~Ga~~y~~lT~~g~s~~~tll~~~~lp~~~~~~~f~~L~~~~~~----~~~~~----  206 (402)
T PF02487_consen  139 FYGK----SSLSAWSSGTGGAGLVGALYYLGLTTLGLSPRTTLLIMLVLPAIFLLSYFFLLPSPPTN----RPYQE----  206 (402)
T ss_pred             hcCc----cccccccCCcChhhHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHHHHHHhhcccccc----CCCcc----
Confidence            4443    3567788888888888887733333244  47778877777766663444455543211    00000    


Q ss_pred             HHHHhhhcCCCCCCCccccccCCCCCccccCCCcccccccHHHHhc-cHHHHHHHHHHHHHHHHHHHHHHhH-H-hhccC
Q 039541          278 LKRLASRSNYQSDYGLESCCLSNMPPKAKNVIPKLDLYSSLKDLFN-RKWALRRLLTIMALAFGIGVVYFGL-L-LGVGN  354 (521)
Q Consensus       278 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~~  354 (521)
                             . ...++.    +.+....+..+.+.+...+.++++-++ -+.+.+.++-..+.++.-.....++ + ..++.
T Consensus       207 -------~-~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~k~~~~k~Ll~ymiPL~lVY~aEY~InqGv~~tl~fp~  274 (402)
T PF02487_consen  207 -------S-ESEDEA----EDDLLESETSESKPDSSSKLSFKEKLKRLKPLLWYMIPLFLVYFAEYFINQGVAPTLLFPN  274 (402)
T ss_pred             -------c-CCCCcc----cccccccccccccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHhcCCc
Confidence                   0 000000    000000000000000111112222111 1112222222222333222222221 1 12222


Q ss_pred             CCccHH----HHHHHHHHHhHhHHHHHHHHHhhcCCchHHHHHHHHHHHHHHHHHhcCCc-hHHHHHHHHHHHHHHHHHH
Q 039541          355 LSFNIY----LSLAFNGLLDIPAYLLTFILIERWSRKSSILTFCILSGTCSAICVAIGDE-QEVLQIGLELASFFSACVA  429 (521)
Q Consensus       355 ~~~~~~----~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~i~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~  429 (521)
                      ...+..    .......++-++++--..++  |+.+.+++.+...+..+.+++-.+..-. +.|...+..+.-|+..|..
T Consensus       275 ~~~~~r~~Y~~Y~~~YQ~GVFISRSS~~~~--rir~lwils~LQ~~nl~~~~l~s~~~fipsi~ivf~lif~eGLlGGa~  352 (402)
T PF02487_consen  275 SFFSPRDQYRWYQLLYQLGVFISRSSLPFF--RIRRLWILSLLQVINLVFLLLQSWYRFIPSIWIVFVLIFYEGLLGGAS  352 (402)
T ss_pred             cCCCHHHHHHHHHHHHHHHHhhhhcceeee--ehhhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhhhHH
Confidence            222221    22344444444443221111  2222222222222222222211111111 1255566777778888888


Q ss_pred             HHHHHHhhccccCchhhhhhhHHHHHhhhhhhhHHHHHHH
Q 039541          430 FNVLLVFGTELFTTCVRNSTTSLVRQAVNLGAAFSPVLIS  469 (521)
Q Consensus       430 ~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~p~~~~  469 (521)
                      +...+..+.|..|+++|..++|.....-.+|..++.++.-
T Consensus       353 YVNtF~~I~~~~~~~~REFslg~vsvsds~GI~lAgll~l  392 (402)
T PF02487_consen  353 YVNTFYRISEEVPPEDREFSLGAVSVSDSLGILLAGLLGL  392 (402)
T ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence            8888888888899999999999999888888887777653

The disease is characterised by progressive loss of vision, seizures and psychomotor disturbances. Biochemically, the disease is characterised by lysosomal accumulation of hydrophobic material, mainly ATP synthase subunit C, largely in the brain but also in other tissues. The disease is fatal within a decade []. Mutations in the CLN3 gene are believed to cause Batten's disease []. The CLN3 gene, with a predicted 438-residue product, maps to chromosome p16p12.1. The gene contains at least 15 exons spanning 15kb and is highly conserved in mammals []. A 1.02kb deletion in the CLN3 gene, occurring in either one or both alleles, is found in 85% of Batten disease chromosomes causing a frameshift generating a predicted translated product of 181 amino acid residues [, ]. 22 other mutations, including deletions, insertions and point mutations, have been reported. It has been suggested that such mutations result in severely truncated CLN3 proteins, or affect its structure/conformation [, ]. CLN3 proteins, which are believed to associate in complexes, are heavily glycosylated lysosomal membrane proteins [], containing complex Asn-linked oligosaccharides []. Extensive glycosylation is important for the stability of these lysosomal proteins in the highly hydrolytic lysosomal lumen. Lysosomal sequestration of active lysosomal enzymes, transport of degraded molecules from the lysosomes, and fusion and fission between lysosomes and other organelles. The CLN3 protein is a 43kDa, highly hydrophobic, multi-transmembrane (TM), phosphorylated protein []. Hydrophobicity analysis predicts 6-9 TM segments, suggesting that CLN3 is a TM protein that may function as a chaperone or signal transducer. The majority of putative phosphorylation sites are found in the N-terminal domain, encompassing 150 residues []. Phosphorylation is believed to be important for membrane compartment interaction, in the formation of functional complexes, and in regulation and interactions with other proteins []. CLN3 contains several motifs that may undergo lipid post-translational modifications (PTMs). PTMs contribute to targeting and anchoring of modified proteins to distinct biological membranes []. There are three general classes of lipid modification: N-terminal myristoylation, C-terminal prenylation, and palmitoylation of cysteine residues. Such modifications are believed to be a common form of PTM occurring in 0.5% of all cellular proteins, including brain tissue []. The C terminus of the CLN3 contains various lipid modification sites: C435, target for prenylation; G419, target for myristoylation; and C414, target for palmitoylation []. Prenylation results in protein hydrophobicity, influences interaction with upstream regulatory proteins and downstream effectors, facilitates protein-protein interaction (multisubunit assembly) and promotes anchoring to membrane lipids. The prenylation motif, Cys-A-A-X, is highly conserved within CLN3 protein sequences of different species []. Species with known CLN3 protein homologues include: Homo sapiens, Canis familiaris, Mus musculus, Saccharomyces cerevisiae and Drosophila melanogaster.; GO: 0016020 membrane

>TIGR00886 2A0108 nitrite extrusion protein (nitrite facilitator)

Probab=98.99  E-value=2.2e-08  Score=97.57  Aligned_cols=116  Identities=10%  Similarity=0.047  Sum_probs=87.6

Q ss_pred             hccCCCccHHHHH---HHHHHHhHhHHHHHHHHHhhcCCchHHHHHHHHHHHHHHHHHhcC-CchHHHHHHHHHHHHHHH
Q 039541          351 GVGNLSFNIYLSL---AFNGLLDIPAYLLTFILIERWSRKSSILTFCILSGTCSAICVAIG-DEQEVLQIGLELASFFSA  426 (521)
Q Consensus       351 ~~~~~~~~~~~~~---~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~i~~~~~~~~~-~~~~~~~~~~~~~~~~~~  426 (521)
                      +.++.+.+.....   ....++..++.++.|++.||+|||+.+.++.++..++.+.+.+.. +.  +...+..++.|++.
T Consensus        28 ~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~i~~~~~~~~~~~~--~~~~~~~~~~g~~~  105 (366)
T TIGR00886        28 IKDDLGLSTAQLGNLVAVPVLAGAVLRIILGFLVDKFGPRYTTTLSLLLLAIPCLWAGLAVQSY--SVLLLLRLFIGIAG  105 (366)
T ss_pred             HHHHhCCCHHHhhHhhHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHhhhH--HHHHHHHHHHHHhc
Confidence            5556666654433   445577788999999999999999999999999999888877765 33  45556666667664


Q ss_pred             HHHHHHHHHhhccccCchhhhhhhHHHHHhhhhhhhHHHHHHH
Q 039541          427 CVAFNVLLVFGTELFTTCVRNSTTSLVRQAVNLGAAFSPVLIS  469 (521)
Q Consensus       427 ~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~p~~~~  469 (521)
                      + .++....++.|.+|+++|+.+.++......+|..+++.+.+
T Consensus       106 ~-~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~  147 (366)
T TIGR00886       106 G-SFASCMPWISFFFPKKIQGTALGLAAGWGNMGGGVAQFVMP  147 (366)
T ss_pred             h-hhHhHHHHHHHhcCHhhhhHHHHHHHHHhHHHHHHHHHHHH
Confidence            3 45667788999999999999999988777777766665553

>PRK11652 emrD multidrug resistance protein D; Provisional

Probab=98.98  E-value=4.1e-08  Score=96.64  Aligned_cols=151  Identities=13%  Similarity=0.004  Sum_probs=110.8

Q ss_pred             HHhhccCCCccHHHHH---HHHHHHhHhHHHHHHHHHhhcCCchHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHH
Q 039541          348 LLLGVGNLSFNIYLSL---AFNGLLDIPAYLLTFILIERWSRKSSILTFCILSGTCSAICVAIGDEQEVLQIGLELASFF  424 (521)
Q Consensus       348 ~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~  424 (521)
                      .|.+.++.+.+.....   ....++..++.++.|+++||+|||+.+..+..+..++.+.....++.  +...+..++.++
T Consensus        31 ~~~i~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~~--~~l~~~~~~~g~  108 (394)
T PRK11652         31 IADMARDLNVREGAVQAVMAAYLLTYGLSQLFYGPLSDRVGRRPVILVGMSIFILGTLVALFAHSL--TVLIAASAIQGL  108 (394)
T ss_pred             HHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhhhhHHHhcCChHHHHHHHHHHHHHHHHHHHHccH--HHHHHHHHHHHh
Confidence            4556666666554333   44556777889999999999999999999988888887776665433  556666777787


Q ss_pred             HHHHHHHHHHHhhccccCchhhhhhhHHHHHhhhhhhhHHHHHHHhh--ccchhHHHHHHHHHHHHHhH-hhhccccCC
Q 039541          425 SACVAFNVLLVFGTELFTTCVRNSTTSLVRQAVNLGAAFSPVLISAG--RQNEFLSFGVFGLVVFCFGF-FVVFLPETI  500 (521)
Q Consensus       425 ~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~p~~~~~~--~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~  500 (521)
                      +.+...+....+..|.++++.++.+.++.+....++..++|.+.+..  ..++...|.+.++..++..+ ..+..||++
T Consensus       109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~  187 (394)
T PRK11652        109 GTGVGGVMARTLPRDLYEGTQLRHANSLLNMGILVSPLLAPLIGGLLTTLFGWRACYLFLLLLGAGVTFSMARWMPETR  187 (394)
T ss_pred             hhhHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHHHHhCCccC
Confidence            77777777778888999999999999999888888999999888763  33566677766665544333 344556643

>TIGR02718 sider_RhtX_FptX siderophore transporter, RhtX/FptX family

Probab=98.97  E-value=7.9e-09  Score=101.56  Aligned_cols=141  Identities=12%  Similarity=0.028  Sum_probs=108.9

Q ss_pred             eeecceeeCCccccchhhHHHHH-HHHHHhhhhhhhccccCCCCchHHHHHHHHHHHHHHHHHhc------cccHHHHHH
Q 039541          105 ISDWSLECAGSSILSGLPSSCFF-IGCLLGGLALSTLGDSSSLGRKKLLFLSCFAMSITALATIF------ANNIWIYST  177 (521)
Q Consensus       105 ~~~~~~~~~~~~~~~~~~~s~~~-lg~~i~~~~~g~l~dr~~~Grr~~l~~~~~~~~~~~~~~~~------~~~~~~l~~  177 (521)
                      .+|.|++.++.    |++..... .+..++.++.|++.||  +|+|+.+..+.++.++..+....      .++...+..
T Consensus       235 l~~~G~s~~~i----g~~~~~~~~~~~~~g~~~~g~l~~r--~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  308 (390)
T TIGR02718       235 LVDAGWPLEWI----GRLGMAGGAVTVLLGCGGGAWLVRR--AGLWRTFILGVGLAGSLALLWFAQAAFWLAPGIAVAWS  308 (390)
T ss_pred             HHhcCCCHHHH----HHHHhHHHHHHHHHHHHHHHHHHHH--hhHHHHHHHHHHHHHHHHHHHHHHHHcccCCcHHHHHH
Confidence            35579988666    88888775 4667788999999999  99999998877665333332221      234445555


Q ss_pred             HHHHhhccchhhHhhhhhheeeeecC-cchhHHHHHHHHHHHHHHHHHHHH-HHhhcCCchhHHHHHHHHHHHHHH
Q 039541          178 IRFVAGFFRAPIMTSVIVLLSEMVSK-RWRGQVVIIGFTFFSFGLVSLPAV-AYLSRGSSWKMLYVWTSIPSIVCC  251 (521)
Q Consensus       178 ~r~l~G~~~g~~~~~~~~~i~~~~~~-~~rg~~~~~~~~~~~~G~~i~~~i-~~~~~~~~wr~~f~~~~~~~~~~~  251 (521)
                      ...+.+++.|...+...+.+.+..++ +++++.+++.+...++|..++|.+ |.+.+..||+..|++.+++.++..
T Consensus       309 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~lg~~~g~~~~G~l~~~~G~~~~f~~~~~~~l~a~  384 (390)
T TIGR02718       309 CSAFGSLITGITSVAIYTAFMRFAGDGDQAGTDVTAVQSTRDLGELIASSIAGYLTDRFGYAGGFLSGTVLAVLAI  384 (390)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHH
Confidence            66677777787878888887777766 889999999999999999999999 778887899999998887776655

RhtX from Sinorhizobium meliloti 2011 and FptX from Pseudomonas aeruginosa appear to be single polypeptide transporters, from the major facilitator family (see pfam07690) for import of siderophores as a means to import iron. This function was suggested by proximity to siderophore biosynthesis genes and then confirmed by study of knockout and heterologous expression phenotypes.

>PF01306 LacY_symp: LacY proton/sugar symporter; InterPro: IPR022814 In bacteria there are a number of families of transport proteins, including symporters and antiporters, that mediate the intake of a variety of sugars with the concomitant uptake of hydrogen ions (proton symporters) []

Probab=98.96  E-value=4e-09  Score=100.67  Aligned_cols=143  Identities=17%  Similarity=0.224  Sum_probs=122.7

Q ss_pred             ccchhhHHHHHHHHHHhhhhhhhccccCCCCchHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHhhccchhhHhhhhhh
Q 039541          117 ILSGLPSSCFFIGCLLGGLALSTLGDSSSLGRKKLLFLSCFAMSITALATIFANNIWIYSTIRFVAGFFRAPIMTSVIVL  196 (521)
Q Consensus       117 ~~~~~~~s~~~lg~~i~~~~~g~l~dr~~~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~  196 (521)
                      ...|.+.+..-+.-++...+..++.+|  +|.|+.++++..+..+=.++++++++.+.+.+.+.+.|+-.+........|
T Consensus       259 ~~~G~l~s~~v~~E~~~m~~~p~li~r--ig~k~~Lllag~i~~iRi~~~~~~~~~~~i~~~klLH~~e~~l~lva~fkY  336 (412)
T PF01306_consen  259 QMYGYLWSVQVFLEALMMFFSPWLINR--IGAKNLLLLAGVIMAIRIIGSGFATNPWVISLIKLLHALEFPLLLVAAFKY  336 (412)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHH--H-HHHHHHHHHHHHHHHHHHHHT--SHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hHHhHHHHHHHHHHHHHHHHHHHHHHh--cChHhHHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            445999999999999999999999999  999999999999999999999999999999999999999999999999999


Q ss_pred             eeeeecCcchhHHHHH-HHHHHHHHHHHHHHH-HHhhcCCchhHHHHHHHHHHHHHHhhhceeeecc
Q 039541          197 LSEMVSKRWRGQVVII-GFTFFSFGLVSLPAV-AYLSRGSSWKMLYVWTSIPSIVCCIIIYPFISES  261 (521)
Q Consensus       197 i~~~~~~~~rg~~~~~-~~~~~~~G~~i~~~i-~~~~~~~~wr~~f~~~~~~~~~~~~~~~~~~~es  261 (521)
                      +++.+|++..++...+ .+...++|.++.+.+ |.+.++.|.+..|++.+.+.++..++..+.+++.
T Consensus       337 I~~~fd~rlsAt~y~v~~~~~~~~~~~i~s~~~G~lyd~~G~~~tylimg~iv~~~~li~~f~l~~~  403 (412)
T PF01306_consen  337 ITAHFDKRLSATLYLVGFQFAKQIGIIILSPLAGYLYDRIGFQHTYLIMGLIVLPFTLISAFTLKKD  403 (412)
T ss_dssp             HHHHS-GGGHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS--S
T ss_pred             HHHhCCHhHHHHHHHHHHHHHHHHHHHHHhhhHHhhHhhcCcHHHHHHHHHHHHHHHHHheeeecCC
Confidence            9999998888777777 467788888876665 8899999999999999988888776777776654

The lacY family of Escherichia coli and Klebsiella pneumoniae are proton/beta-galactoside symporters, which, like most sugar transporters, are integral membrane proteins with 12 predicted transmembrane (TM) regions. Also similar to the lacY family are the rafinose (rafB) and sucrose (cscB) permeases from E. coli []. This entry also includes bacterial phenylproprionate permease.; PDB: 1PV7_B 1PV6_A 2Y5Y_B 2CFQ_A 2V8N_B 2CFP_A.

>TIGR00903 2A0129 major facilitator 4 family protein

Probab=98.96  E-value=3.5e-08  Score=95.54  Aligned_cols=152  Identities=11%  Similarity=-0.079  Sum_probs=103.5

Q ss_pred             HhHHhhccCCCccHHHHH---HHHHHHhHhHHHHHHHHHhhcCCchHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHH
Q 039541          346 FGLLLGVGNLSFNIYLSL---AFNGLLDIPAYLLTFILIERWSRKSSILTFCILSGTCSAICVAIGDEQEVLQIGLELAS  422 (521)
Q Consensus       346 ~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~  422 (521)
                      ...|.+.++++.+....+   ....++..++.+..|++.||+|||+++.........+........  +...+++.-++.
T Consensus        12 ~~lp~i~~~~~~s~~~~g~~~s~~~~g~~i~~~~~G~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~--~~~~l~~~R~l~   89 (368)
T TIGR00903        12 PVLSLVAEDIDVSKEELGLLAITYPAAFLALTIPSGLLLDRAFKRWFLFGSLATFAAAAGRLLDPF--NYEWLLACQLLA   89 (368)
T ss_pred             hhHHHHHHHhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHHHhc--cHHHHHHHHHHH
Confidence            345666666665544433   344566778889999999999998876655444433322222112  225667777778


Q ss_pred             HHHHHHHHHHHHHhhccccCchhhhhhhHHHHHhhhhhhhHHHHHHHhh--ccchhHHHHHHHHHHHHHhHh-hhccccC
Q 039541          423 FFSACVAFNVLLVFGTELFTTCVRNSTTSLVRQAVNLGAAFSPVLISAG--RQNEFLSFGVFGLVVFCFGFF-VVFLPET  499 (521)
Q Consensus       423 ~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~p~~~~~~--~~~~~~~~~~~~~~~~~~~~~-~~~~~~~  499 (521)
                      |++.+. .........|.+|+++|+++.++......+|..++|.+.+..  ..++...|.+.+++.++..++ .+.+||.
T Consensus        90 G~g~~~-~~~~~~~~~~~~~~~~r~~a~~~~~~~~~lG~~l~~~~~~~l~~~~gWr~~f~~~~~l~~~~~~~~~~~lp~~  168 (368)
T TIGR00903        90 ALGQPF-LLNAFAPAASQIREERRDLVISLLSFAMYLGIIFALAAGLKIYTAGGLQLLIIPIAAVAAAGIILVLAALPAL  168 (368)
T ss_pred             HhHhHH-HHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence            888775 445555568999999999999999999999999998887753  456777887777766655443 4566765


Q ss_pred             C
Q 039541          500 I  500 (521)
Q Consensus       500 ~  500 (521)
                      +
T Consensus       169 p  169 (368)
T TIGR00903       169 P  169 (368)
T ss_pred             C
Confidence            4

This family of proteins are uncharacterized proteins from archaea. This family includes proteins from Archaeoglobus fulgidus and Aeropyrum pernix.

>PRK09584 tppB putative tripeptide transporter permease; Reviewed

Probab=98.96  E-value=3.5e-08  Score=99.68  Aligned_cols=170  Identities=11%  Similarity=-0.051  Sum_probs=108.2

Q ss_pred             HhccHH-HHHHHHHHHHHHHHHHHHHHhHHhh-ccCCCccHHHHHHHH---HHHhHhHHHHHHHHHhh-cCCchHHHHHH
Q 039541          321 LFNRKW-ALRRLLTIMALAFGIGVVYFGLLLG-VGNLSFNIYLSLAFN---GLLDIPAYLLTFILIER-WSRKSSILTFC  394 (521)
Q Consensus       321 l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~---~~~~~~~~~~~g~l~dr-~g~~~~~~~~~  394 (521)
                      .+++|+ ++......+...++.......++.+ .++++.+........   ........+++|++.|| +|||+.+..+.
T Consensus        16 ~~~~p~~~~~~~~~~~~~~~~~y~~~~~l~~yl~~~lg~s~~~a~~~~~~~~~~~~~~~~~~G~LaDr~~G~r~~~~~g~   95 (500)
T PRK09584         16 AFKQPKAFYLIFSIELWERFGYYGLQGIMAVYLVKQLGMSEADSITLFSSFSALVYGLVAIGGWLGDKVLGTKRVIMLGA   95 (500)
T ss_pred             hhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHH
Confidence            445553 3333333334444433333333333 355666544333222   22223344689999999 59999999999


Q ss_pred             HHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHhhccccCchh--hhhhhHHHHHhhhhhhhHHHHHHHhh-
Q 039541          395 ILSGTCSAICVAIGDEQEVLQIGLELASFFSACVAFNVLLVFGTELFTTCV--RNSTTSLVRQAVNLGAAFSPVLISAG-  471 (521)
Q Consensus       395 ~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--r~~~~~~~~~~~~~g~~~~p~~~~~~-  471 (521)
                      ++.+++..++.+.... .+...+..++.+++.+...+...++..|.+|++.  |..+.++.+...++|.+++|.+.++. 
T Consensus        96 ~~~~ig~~l~~~~~~~-~~~l~~~~~l~gig~g~~~~~~~~l~~~~f~~~~~~~~~~~~~~~~~~~iG~~~gp~i~g~l~  174 (500)
T PRK09584         96 IVLAIGYALVAWSGHD-AGIVYMGMATIAVGNGLFKANPSSLLSTCYEKDDPRLDGAFTMYYMSINIGSFFSMLATPWLA  174 (500)
T ss_pred             HHHHHHHHHHHHhccc-HHHHHHHHHHHHHhhhcccCCHHHHHHHhcCCCchhhhhcchHHHHHHHHHHHHHHHHHHHHH
Confidence            9998887777664332 1334455566777777777788889999998643  45678888889999999999999863 


Q ss_pred             -ccchhHHHHHHHHHHHHHhH
Q 039541          472 -RQNEFLSFGVFGLVVFCFGF  491 (521)
Q Consensus       472 -~~~~~~~~~~~~~~~~~~~~  491 (521)
                       ..++...|.+.++..+++.+
T Consensus       175 ~~~g~~~~F~i~~i~~~i~~i  195 (500)
T PRK09584        175 AKYGWSVAFALSVVGMLITVV  195 (500)
T ss_pred             HhhCHHHHHHHHHHHHHHHHH
Confidence             34677777776655454443

>KOG1330 consensus Sugar transporter/spinster transmembrane protein [Carbohydrate transport and metabolism]

Probab=98.95  E-value=7.3e-10  Score=104.34  Aligned_cols=142  Identities=13%  Similarity=-0.041  Sum_probs=114.1

Q ss_pred             HHHHHHHHHHhHhHHHHHHHHHhhcCCchHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 039541          360 YLSLAFNGLLDIPAYLLTFILIERWSRKSSILTFCILSGTCSAICVAIGDEQEVLQIGLELASFFSACVAFNVLLVFGTE  439 (521)
Q Consensus       360 ~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  439 (521)
                      ........+...+++++.|++.||+.|++++.+|..+-.++.+...+....  |.+.++-.+.|++.....++..++++|
T Consensus        71 Gll~~vf~v~~~i~sPl~gyLadryNR~~v~~vG~~iW~~Av~~~~fs~~F--wq~~l~R~~vGiGeAs~~~ia~s~IaD  148 (493)
T KOG1330|consen   71 GLLQTVFIVVFMIASPLFGYLADRYNRKRVIAVGIFIWTLAVFASGFSNHF--WQVLLCRGFVGIGEASYSPIAPSLIAD  148 (493)
T ss_pred             cchhHHHHHHHHHHHHHHHHHHhhcCcceEEeeHHHHHHHHHHHHHHHHHH--HHHHHHHHHhccchhhhcccchhHhhh
Confidence            344455667788899999999999999999999999999998888877333  788888899999999999999999999


Q ss_pred             ccCchhhhhhhHHHHHhhhhhhhHHHHHHHh---hccchhHHHHHHHHHHHHHhHhh-hccccCCCCC
Q 039541          440 LFTTCVRNSTTSLVRQAVNLGAAFSPVLISA---GRQNEFLSFGVFGLVVFCFGFFV-VFLPETIGVT  503 (521)
Q Consensus       440 ~~~~~~r~~~~~~~~~~~~~g~~~~p~~~~~---~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~  503 (521)
                      .+|.++|++++++.+....+|..+|-+....   ...++.+.|.+.+++.++..++. ++.+|.+++.
T Consensus       149 ~f~~~~Rs~~~~ify~~ipvGsglG~vvgs~va~~~~~Wr~af~~~avl~vi~~~L~~~f~~eP~rga  216 (493)
T KOG1330|consen  149 SFPDDKRSRVLGIFYFAIPVGSGLGYVVGSVVASLTFWWRWAFRGSAVLGVIVGLLVFLFVREPERGA  216 (493)
T ss_pred             cCcchhhhHHHHHhhhhcccccceeEEeeeeeccCccceEEEEEeehHHHHHHHHHHHhhccCccccc
Confidence            9999999999999999998887766555443   22347778888888887766654 4555555443

>KOG2615 consensus Permease of the major facilitator superfamily [General function prediction only]

Probab=98.94  E-value=3.8e-09  Score=96.82  Aligned_cols=109  Identities=16%  Similarity=0.044  Sum_probs=87.3

Q ss_pred             HHHHHHHHHHhHhHHHHHHHHHhhcCCchHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 039541          360 YLSLAFNGLLDIPAYLLTFILIERWSRKSSILTFCILSGTCSAICVAIGDEQEVLQIGLELASFFSACVAFNVLLVFGTE  439 (521)
Q Consensus       360 ~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  439 (521)
                      ...+...++..++.+...|.++||+|||.++..+.+..++...+.+...+.  ..+...=++.|.+ -+..++..++++|
T Consensus        71 GflGSsF~ilQ~~sS~~~G~~SD~yGRkpvll~c~~~va~s~ll~~~S~~F--~afv~aR~l~Gi~-kgnl~v~rAiisd  147 (451)
T KOG2615|consen   71 GFLGSSFSILQFISSPLWGCLSDRYGRKPVLLACLIGVALSYLLWALSRNF--AAFVLARFLGGIF-KGNLSVIRAIISD  147 (451)
T ss_pred             hhHhhHHHHHHHHhhhhhhhhhhhhCchHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHhhhhc-cCchHHHHHHHHh
Confidence            344455678889999999999999999999999999999987777765443  2222223444444 3345789999999


Q ss_pred             ccCchhhhhhhHHHHHhhhhhhhHHHHHHHhh
Q 039541          440 LFTTCVRNSTTSLVRQAVNLGAAFSPVLISAG  471 (521)
Q Consensus       440 ~~~~~~r~~~~~~~~~~~~~g~~~~p~~~~~~  471 (521)
                      +++++.|+.+++.++....+|.++||.++|+.
T Consensus       148 V~sek~r~l~ms~v~~a~~lGfilGPmIGgyl  179 (451)
T KOG2615|consen  148 VVSEKYRPLGMSLVGTAFGLGFILGPMIGGYL  179 (451)
T ss_pred             hcChhhccceeeeeehhhhcchhhcchhhhHH
Confidence            99999999999999999999999999999873

>PRK15034 nitrate/nitrite transport protein NarU; Provisional

Probab=98.93  E-value=2.4e-07  Score=90.84  Aligned_cols=110  Identities=10%  Similarity=-0.011  Sum_probs=82.8

Q ss_pred             CCCccHHHHH---HHHHHHhHhHHHHHHHHHhhcCCchHHHHHHHHHHHHHHHHHhcC---CchHHHHHHHHHHHHHHHH
Q 039541          354 NLSFNIYLSL---AFNGLLDIPAYLLTFILIERWSRKSSILTFCILSGTCSAICVAIG---DEQEVLQIGLELASFFSAC  427 (521)
Q Consensus       354 ~~~~~~~~~~---~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~i~~~~~~~~~---~~~~~~~~~~~~~~~~~~~  427 (521)
                      +++.+.....   .+..+...++++..|++.||+|.|+++.++..+..+..+...+..   ..+.+.+++..++.|++ +
T Consensus        64 ~~~ls~~q~g~l~ai~~l~~al~rip~G~l~Dr~G~R~v~~~~~ll~~i~~~~~~~a~~~~~~s~~~lli~r~l~Gig-g  142 (462)
T PRK15034         64 GFNFTTDQLFLLTALPSVSGALLRVPYSFMVPIFGGRRWTVFSTAILIIPCVWLGIAVQNPNTPFGIFIVIALLCGFA-G  142 (462)
T ss_pred             hcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHHcccCCCHHHHHHHHHHHHHH-H
Confidence            4666554433   334455556778889999999999999999999888888777641   12225677777788886 7


Q ss_pred             HHHHHHHHhhccccCchhhhhhhHHHHHhhhhhhhHH
Q 039541          428 VAFNVLLVFGTELFTTCVRNSTTSLVRQAVNLGAAFS  464 (521)
Q Consensus       428 ~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~  464 (521)
                      ..++.....+++.+|+++||++.|+....+++|..++
T Consensus       143 ~~f~~~~~~vs~wfp~~~rG~A~Gi~~g~G~~G~~l~  179 (462)
T PRK15034        143 ANFASSMGNISFFFPKAKQGSALGINGGLGNLGVSVM  179 (462)
T ss_pred             HhHHHHHHHHHHHCCHhHhHHHHHHHHHHHhhHHHHH
Confidence            7888999999999999999999999976666665543

>PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated

Probab=98.93  E-value=3.6e-09  Score=119.02  Aligned_cols=142  Identities=15%  Similarity=0.131  Sum_probs=119.4

Q ss_pred             ceeeecceeeC-CccccchhhHHHHHHHHHHhhhhhhhccccCCCCchHHHHHHHHHHHHHHHHHhccccHHHHHHHHHH
Q 039541          103 TIISDWSLECA-GSSILSGLPSSCFFIGCLLGGLALSTLGDSSSLGRKKLLFLSCFAMSITALATIFANNIWIYSTIRFV  181 (521)
Q Consensus       103 ~i~~~~~~~~~-~~~~~~~~~~s~~~lg~~i~~~~~g~l~dr~~~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l  181 (521)
                      .+.+++|.+.. +.    +++.+...++.+++++++|+++||  +++|+++.++.++.+++.++..+..+.+.+++..++
T Consensus       258 ~~~~~~g~s~~~~~----g~~~~~~~ig~~~g~~~~g~l~~r--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  331 (1146)
T PRK08633        258 YAKEVLGLDNTFQV----QYLLAASAIGIGIGSLLAGRLSGR--HIELGLVPLGALGLALSLFLLPTAPSLASVLVLFFL  331 (1146)
T ss_pred             HHHHHhCCCcHHHH----HHHHHHHHHHHHHHHHHHHHHhCC--ceEccchhHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence            34566788775 44    999999999999999999999999  999999999999998988888888899999999999


Q ss_pred             hhccchhhHhhhhhheeeeecCcchhHHHHHHHHHHHHHHHHHHHHHHhhc--CCchhHHHHHHHHHHHHH
Q 039541          182 AGFFRAPIMTSVIVLLSEMVSKRWRGQVVIIGFTFFSFGLVSLPAVAYLSR--GSSWKMLYVWTSIPSIVC  250 (521)
Q Consensus       182 ~G~~~g~~~~~~~~~i~~~~~~~~rg~~~~~~~~~~~~G~~i~~~i~~~~~--~~~wr~~f~~~~~~~~~~  250 (521)
                      .|++.+...+...+++.+..|+++||+++++.+....+|.++++.++.++.  ..++...|++.+.+.++.
T Consensus       332 ~g~~~~~~~~~~~~~~~~~~p~~~rg~~~~~~~~~~~lg~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~  402 (1146)
T PRK08633        332 FGFSAGLFIVPLNALIQFRAPEKELGKVLAANNFLQNVGMLLFLALTTLFSGLGLSPAGLFYLIALVTLIG  402 (1146)
T ss_pred             HHHHHHHhhHHHHHHHhhcCCccchhhhhHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999999988887755443  245666666655554443

>TIGR00901 2A0125 AmpG-related permease

Probab=98.92  E-value=5.9e-08  Score=94.15  Aligned_cols=156  Identities=13%  Similarity=-0.014  Sum_probs=107.0

Q ss_pred             HHHHhHHhhccCCCccHHHHHHHHHH--HhHhHHHHHHHHHhhc-----CCchH-HHHHHHHHHHHHHHHHhcCCchH-H
Q 039541          343 VVYFGLLLGVGNLSFNIYLSLAFNGL--LDIPAYLLTFILIERW-----SRKSS-ILTFCILSGTCSAICVAIGDEQE-V  413 (521)
Q Consensus       343 ~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~g~l~dr~-----g~~~~-~~~~~~~~~i~~~~~~~~~~~~~-~  413 (521)
                      ......|.+.++.|.+....+....+  ... ..++.|+++||+     ||||. +..+.++.++....+.+...... +
T Consensus         6 ~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~-~~~~~g~~~Dr~~~~~~Grr~~~l~~~~~~~~~~~~~l~~~~~~~~l~   84 (356)
T TIGR00901         6 LVGNTLPYWLRSKNVSLKTIGFFSLVGLPYS-LKFLWSPLVDTVYLPFFGRRRSWLVLTQVLLLSLLLILSFLVPSTDLP   84 (356)
T ss_pred             hHHhHHHHHHHHcCCCHHHHHHHHHHHHHHH-HHHHHHHHHhcccCCCCCccHHHHHHHHHHHHHHHHHHHcCCcchhHH
Confidence            34455677788888776655554422  222 378999999998     88886 45666666666556655543222 3


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhccccCchhhhhhhHHHHHhhhhhhhHHHHHHHhh--ccc--------hhHHHHHHH
Q 039541          414 LQIGLELASFFSACVAFNVLLVFGTELFTTCVRNSTTSLVRQAVNLGAAFSPVLISAG--RQN--------EFLSFGVFG  483 (521)
Q Consensus       414 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~p~~~~~~--~~~--------~~~~~~~~~  483 (521)
                      ......++.+++.....+...+++.|.+|+++|+.+.++......+|.+++|.+.+..  ..+        +...|.+.+
T Consensus        85 ~l~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~l~~~~g~~~~~~~~wr~~f~i~a  164 (356)
T TIGR00901        85 LLAGLAFLIAFFSATQDIALDAWRLEILSDEELGYGSTIYIVGYRAGMLLSGSLALVLASPEFANTGLITLWGYIFFWTA  164 (356)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhCCHhhhchHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccccccHHHHHHHH
Confidence            4444555556666667788899999999999999999999999999999999888642  223        666777777


Q ss_pred             HHHHHHhHhhh-ccccC
Q 039541          484 LVVFCFGFFVV-FLPET  499 (521)
Q Consensus       484 ~~~~~~~~~~~-~~~~~  499 (521)
                      ++.+++.+..+ ..+|.
T Consensus       165 i~~l~~~~~~~~~~~e~  181 (356)
T TIGR00901       165 LLILPGLLVTLFLAKEP  181 (356)
T ss_pred             HHHHHHHHHHHHhccCC
Confidence            76666554444 34554

>PRK10207 dipeptide/tripeptide permease B; Provisional

Probab=98.91  E-value=4e-08  Score=98.71  Aligned_cols=145  Identities=10%  Similarity=-0.058  Sum_probs=101.4

Q ss_pred             ccCCCccHHHHH---HHHHHHhHhHHHHHHHHHhh-cCCchHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHH
Q 039541          352 VGNLSFNIYLSL---AFNGLLDIPAYLLTFILIER-WSRKSSILTFCILSGTCSAICVAIGDEQEVLQIGLELASFFSAC  427 (521)
Q Consensus       352 ~~~~~~~~~~~~---~~~~~~~~~~~~~~g~l~dr-~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~  427 (521)
                      .++++.+.....   ........+..+++|+++|| +|||+++.++.++..++.+.+.+..... ...++...+.+++.+
T Consensus        42 ~~~lg~~~~~a~~i~~~~~~~~~~~~~~~G~laDr~~G~r~~~~~g~~~~~~g~~~~~~~~~~~-~ll~~~~~l~~ig~g  120 (489)
T PRK10207         42 VKQLGFSQEQAFITFGAFAALVYGLISIGGYVGDHLLGTKRTIVLGAIVLAIGYFMTGMSLLKP-DLIFIALGTIAVGNG  120 (489)
T ss_pred             HHHcCCCHHHHHHHHHHHHHHHHHHHhhHHHhhhhccchHHHHHHHHHHHHHHHHHHHHhccch-hHHHHHHHHHHhccc
Confidence            344565443333   22333444556789999999 9999999999999999988887654322 233355666677777


Q ss_pred             HHHHHHHHhhccccCchh--hhhhhHHHHHhhhhhhhHHHHHHHhh--ccchhHHHHHHHHHHHHHhHhhhccc
Q 039541          428 VAFNVLLVFGTELFTTCV--RNSTTSLVRQAVNLGAAFSPVLISAG--RQNEFLSFGVFGLVVFCFGFFVVFLP  497 (521)
Q Consensus       428 ~~~~~~~~~~~~~~~~~~--r~~~~~~~~~~~~~g~~~~p~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~  497 (521)
                      ...+...+++.|.+|++.  |+.+.++.+...++|.+++|.+.++.  ..++.+.|.+.++..+++.+.+...+
T Consensus       121 ~~~~~~~~li~~~~p~~~~~~~~~~~~~~~~~nig~~~g~~l~g~l~~~~gw~~~F~i~~i~~~~~~~~~~~~~  194 (489)
T PRK10207        121 LFKANPASLLSKCYPPKDPRLDGAFTLFYMSINIGSLISLSLAPVIADKFGYSVTYNLCGAGLIIALLVYFACR  194 (489)
T ss_pred             cccCCHHHHHHHhcCCCchhhhcchhHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHHHHHHcc
Confidence            778888899999998874  57789999999999999999988863  34566777765554444444443333

>TIGR01272 gluP glucose/galactose transporter

Probab=98.89  E-value=2.6e-08  Score=94.02  Aligned_cols=133  Identities=11%  Similarity=0.137  Sum_probs=106.8

Q ss_pred             ecceeeCCccccchhhHHHHHHHHHHhhhhhhhccccCCCCchHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHhhccc
Q 039541          107 DWSLECAGSSILSGLPSSCFFIGCLLGGLALSTLGDSSSLGRKKLLFLSCFAMSITALATIFANNIWIYSTIRFVAGFFR  186 (521)
Q Consensus       107 ~~~~~~~~~~~~~~~~~s~~~lg~~i~~~~~g~l~dr~~~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~  186 (521)
                      .+|+++++.    ++..+.+..+..+|.++.+++.||  +|+|+.+.++..+..++.++....++...+ .+-++.|++.
T Consensus       172 ~~g~s~~~a----~~~~s~~~~~~~iGr~~~~~l~~r--~g~~~~l~~~~~l~~~~~~l~~~~~~~~~~-~~~~l~g~~~  244 (310)
T TIGR01272       172 ALGLPEDQA----AHFTAYTWGGAMVGRFIGSAVMPM--ISQGRYLAFNAFLAVLLSIGAALTHGYVAM-WFVLALGLFN  244 (310)
T ss_pred             cCCCCHHHH----HHHHHHHHHHHHHHHHHHHHHHHH--hCHHHHHHHHHHHHHHHHHHHHHcCCHHHH-HHHHHHHHHH
Confidence            468888666    999999999999999999999999  999999998888888887776666554433 4566889999


Q ss_pred             hhhHhhhhhheeeeecCcchhHHHHHHHHHHHHHHHHHHHH-HHhhcCCchhHHHHHHHHHHH
Q 039541          187 APIMTSVIVLLSEMVSKRWRGQVVIIGFTFFSFGLVSLPAV-AYLSRGSSWKMLYVWTSIPSI  248 (521)
Q Consensus       187 g~~~~~~~~~i~~~~~~~~rg~~~~~~~~~~~~G~~i~~~i-~~~~~~~~wr~~f~~~~~~~~  248 (521)
                      +..+|...+...+..|+ +.+++.++. ....+|.++.|.+ |.+.+..|.+..|++..+..+
T Consensus       245 s~i~P~~~s~a~~~~~~-~~~~asai~-~~~~~Gg~i~P~l~G~lad~~g~~~a~~v~~~~~~  305 (310)
T TIGR01272       245 SIMFPTIFSLALNALGR-HTSQGSGIL-CLAIVGGAIVPLLQGSLADCLGIQLAFALPVPCYL  305 (310)
T ss_pred             HHHHHHHHHHHHhhhhh-hhhhhHHHH-HHHHhcchHHHHHHHHHHHhccchHHHHHHHHHHH
Confidence            99999999999888874 456667775 4566888888876 888888899998875544433

Disruption of the loci leads to the total loss of glucose or galactose uptake in E.coli. Putative transporters in other bacterial species were isolated by functional complementation, which restored it functional activity.

>TIGR00894 2A0114euk Na(+)-dependent inorganic phosphate cotransporter

Probab=98.89  E-value=1.3e-08  Score=102.67  Aligned_cols=134  Identities=13%  Similarity=-0.022  Sum_probs=104.8

Q ss_pred             HHHHHHHhHhHHHHHHHHHhhcCCchHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHhhccccC
Q 039541          363 LAFNGLLDIPAYLLTFILIERWSRKSSILTFCILSGTCSAICVAIGDEQEVLQIGLELASFFSACVAFNVLLVFGTELFT  442 (521)
Q Consensus       363 ~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  442 (521)
                      .....++..++.++.|++.||+|+|+.+..+.++..++.++..+......+..++.-++.|++.+..++....++.|.+|
T Consensus        82 ~s~~~~~~~~~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~~~G~~~~~~~~~~~~~~~~~~~  161 (465)
T TIGR00894        82 LSSHFYGQIIIQIPVGYLAGKYVFKWSIGIGMFLSSVISIVIPWAAGGGIALVVFCRVIQGLAQGSVSPATHKIIVKWAP  161 (465)
T ss_pred             HHHHHHHHHHHHcchHHHHHHhCcchhhHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHhcccchhhHHHHHHhcCC
Confidence            34455677889999999999999999999998888777666543322222456667788888888899999999999999


Q ss_pred             chhhhhhhHHHHHhhhhhhhHHHHHHHhh--c-cchhHHHHHHHHHHHHHhHhhhcc
Q 039541          443 TCVRNSTTSLVRQAVNLGAAFSPVLISAG--R-QNEFLSFGVFGLVVFCFGFFVVFL  496 (521)
Q Consensus       443 ~~~r~~~~~~~~~~~~~g~~~~p~~~~~~--~-~~~~~~~~~~~~~~~~~~~~~~~~  496 (521)
                      ++.|+++.++......+|.+++|.+.+..  . .++...|.+.++..++..++++..
T Consensus       162 ~~~r~~~~~~~~~~~~~g~~i~~~l~~~l~~~~~gw~~~f~i~~~~~~~~~~~~~~~  218 (465)
T TIGR00894       162 PKERSRLLGMSTSGFQLGTFIFLPISGWLCESWGGWPMIFYVFGIVGCAWSLLWFVF  218 (465)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCeehhhhhHHHHHHHHHHHHH
Confidence            99999999999999999999999998752  3 266777887777766655554443

>COG2270 Permeases of the major facilitator superfamily [General function prediction only]

Probab=98.89  E-value=8.2e-09  Score=96.54  Aligned_cols=150  Identities=16%  Similarity=0.118  Sum_probs=129.7

Q ss_pred             eeecceeeCCccccchhhHHHHHHHHHHhhhhhhhccccCCCCchHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHhhc
Q 039541          105 ISDWSLECAGSSILSGLPSSCFFIGCLLGGLALSTLGDSSSLGRKKLLFLSCFAMSITALATIFANNIWIYSTIRFVAGF  184 (521)
Q Consensus       105 ~~~~~~~~~~~~~~~~~~~s~~~lg~~i~~~~~g~l~dr~~~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~  184 (521)
                      ++++|++..|.    .++.-...+..++|++++|++.||  +|.|+++.+++++..+.++...+...-..+.+.-.+.|+
T Consensus       280 ~~~~gls~~~l----ll~g~~~~vvA~lg~ii~g~Ld~r--fg~k~vl~~~lvi~~~~~~~~~~~~~~~~f~i~gll~g~  353 (438)
T COG2270         280 AADLGLSSTEL----LLIGIALSVVAALGAIIAGFLDER--FGSKPVLMIGLVILSIAALYLIFLEGELDFWILGLLVGT  353 (438)
T ss_pred             HHHcCccHHHH----HHHHHHHHHHHHHHHHHHHHHHHH--hCCceeehHHHHHHHHHHHHHHHccccHHHHHHHHHHHH
Confidence            45999999777    888888888899999999999999  999999999999999999999888888888888899999


Q ss_pred             cchhhHhhhhhheeeeecCcchhHHHHHHHHHHHHHHHHHHHH-HHhhcC-CchhHHHHHHHHHHHHHHhhhceeeecc
Q 039541          185 FRAPIMTSVIVLLSEMVSKRWRGQVVIIGFTFFSFGLVSLPAV-AYLSRG-SSWKMLYVWTSIPSIVCCIIIYPFISES  261 (521)
Q Consensus       185 ~~g~~~~~~~~~i~~~~~~~~rg~~~~~~~~~~~~G~~i~~~i-~~~~~~-~~wr~~f~~~~~~~~~~~~~~~~~~~es  261 (521)
                      ..|.....+-+|.++..|+++-++.+|+++...-.+..+||.+ +.+.+. .+-|.-+....++.++.+ +..+.+|+.
T Consensus       354 s~G~~qA~SRSy~~~lvp~~k~~~fFglyaltgra~S~~gp~lv~v~t~iTg~~r~g~~~i~vll~iGl-~~L~~v~~~  431 (438)
T COG2270         354 SLGGAQASSRSYLARLVPKGKEGRFFGLYALTGRAASFLGPFLVAVITQITGSSRAGVLSIIVLLLIGL-LLLLRVKVP  431 (438)
T ss_pred             hcchHHHHHHHHHHHhCCCccccceeehhhhhhhHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHhhH-hhEEeecCC
Confidence            9999999999999999999999999999999999999999988 665542 357777776666666666 556666653

>KOG0253 consensus Synaptic vesicle transporter SV2 (major facilitator superfamily) [General function prediction only]

Probab=98.88  E-value=5.6e-09  Score=95.14  Aligned_cols=124  Identities=19%  Similarity=0.105  Sum_probs=96.6

Q ss_pred             HHHHHhhhhhhhccccCCCCchHHHHHHHHHHHHHHHHHhccccHH----HHHHHHHHhhccchhhHhhhhhheeeeecC
Q 039541          128 IGCLLGGLALSTLGDSSSLGRKKLLFLSCFAMSITALATIFANNIW----IYSTIRFVAGFFRAPIMTSVIVLLSEMVSK  203 (521)
Q Consensus       128 lg~~i~~~~~g~l~dr~~~Grr~~l~~~~~~~~~~~~~~~~~~~~~----~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~  203 (521)
                      +.-.-|.++.+.+.||  +|||+.+...++++++..++.-.+.+-.    .+..+|++    .++.+.+.+.|..|.+|.
T Consensus       392 laefPGlLIt~~iver--lGRKkTMal~l~~f~iflfll~~c~~rn~~tvllf~araf----isg~fqvaYvYtPEVyPT  465 (528)
T KOG0253|consen  392 LAEFPGLLITGVIVER--LGRKKTMALSLILFGIFLFLLTTCKTRNAYTVLLFTARAF----ISGAFQVAYVYTPEVYPT  465 (528)
T ss_pred             HhhCCchhHHHHHHHH--hcchhHHHHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHH----HhchheEEEEecCcccch
Confidence            3444678889999999  9999999999999999999887765433    33445554    455677889999999999


Q ss_pred             cchhHHHHHHHHHHHHHHHHHHHHHHhhcCCchhHHHHHHHHHHHHHHhhhceeee
Q 039541          204 RWRGQVVIIGFTFFSFGLVSLPAVAYLSRGSSWKMLYVWTSIPSIVCCIIIYPFIS  259 (521)
Q Consensus       204 ~~rg~~~~~~~~~~~~G~~i~~~i~~~~~~~~wr~~f~~~~~~~~~~~~~~~~~~~  259 (521)
                      +-|+...|.-....-+|.++.|+++... ..+-..+..+.+...++.. ++..++|
T Consensus       466 avRatgvGtcSsmaRIggI~~p~iA~~~-e~s~sl~i~vy~~~~ilag-IavcffP  519 (528)
T KOG0253|consen  466 AVRATGVGTCSSMARIGGIFSPVIAMRA-ELSTSLPIFVYGALFILAG-IAVCFFP  519 (528)
T ss_pred             hhhhcchhhhhhHHhhhhhhhhHHHHHh-ccceeehHHHHHHHHHHHH-HHheeee
Confidence            9999999999999999999999998433 3345556666677777777 4555555

>PTZ00207 hypothetical protein; Provisional

Probab=98.88  E-value=1.1e-07  Score=96.05  Aligned_cols=143  Identities=8%  Similarity=-0.063  Sum_probs=100.3

Q ss_pred             HhhccCCCccHHHHHHHHHHHhH--hHHHHHHHHHhhcCCchHHHHHHHHHHHHHHHHHhcCC----chHHHHHHHHHHH
Q 039541          349 LLGVGNLSFNIYLSLAFNGLLDI--PAYLLTFILIERWSRKSSILTFCILSGTCSAICVAIGD----EQEVLQIGLELAS  422 (521)
Q Consensus       349 ~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~g~l~dr~g~~~~~~~~~~~~~i~~~~~~~~~~----~~~~~~~~~~~~~  422 (521)
                      +.+.++++.+......+..++..  .+.++.|++.||+|+|+++.++.++..++.++.++...    .+.+.+.+..++.
T Consensus        51 ~~L~~~lgls~~~l~~i~svg~~~g~~~lp~G~L~Dr~G~R~vllig~ll~~iG~ll~ala~~~~i~~s~~~l~l~r~l~  130 (591)
T PTZ00207         51 GAMQARYNLTQRDLSTITTVGIAVGYFLLPYSFIYDYLGPRPIFVLSMTVFCLGTLLFALTFQEVIEGSVVRLSVYNGLM  130 (591)
T ss_pred             HHHHHHhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHhcccccCcHHHHHHHHHHH
Confidence            44455666655444433333222  24457899999999999999999999999988877521    1225566677788


Q ss_pred             HHHHHHHHHHHHHhhccccCchhhhhhhHHHHHhhhhhhhH-HHHHHHhhccchhHHHHHHHHHHHHHhHh
Q 039541          423 FFSACVAFNVLLVFGTELFTTCVRNSTTSLVRQAVNLGAAF-SPVLISAGRQNEFLSFGVFGLVVFCFGFF  492 (521)
Q Consensus       423 ~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~-~p~~~~~~~~~~~~~~~~~~~~~~~~~~~  492 (521)
                      |++.+..++.....+.+.+| +.||.+.|+......+|+++ +|+..++...++...+.+.+++.++..++
T Consensus       131 G~G~~~~~~~~~~~i~~~Fp-~~RG~a~Gi~~~~~gLGsaI~~~l~~~l~~~~~~~~fl~l~vl~~vv~ll  200 (591)
T PTZ00207        131 TLGCMLFDLGAVVTVLSVFP-SNRGAVVAIMKTFTGLGSAILGSIQLAFFSDNTSAYFFFLMSFALVVGIL  200 (591)
T ss_pred             HHHHHHHHHHHHHHHHHhCh-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence            88877777777778888887 67899999999999999874 55555554444556666666666554444

>TIGR00769 AAA ADP/ATP carrier protein family

Probab=98.88  E-value=1.1e-05  Score=79.25  Aligned_cols=260  Identities=14%  Similarity=0.167  Sum_probs=154.0

Q ss_pred             cceeeecceeeC--CccccchhhHHHHHHHHHHh-hhhhhhccccCCCCchHHHHHHHHHHHHHHHHHhcc----c----
Q 039541          102 TTIISDWSLECA--GSSILSGLPSSCFFIGCLLG-GLALSTLGDSSSLGRKKLLFLSCFAMSITALATIFA----N----  170 (521)
Q Consensus       102 ~~i~~~~~~~~~--~~~~~~~~~~s~~~lg~~i~-~~~~g~l~dr~~~Grr~~l~~~~~~~~~~~~~~~~~----~----  170 (521)
                      .++++.+.++..  .. ....++-+...+...+. .++.+++++|  ++|++++.+....+.+..++.++.    +    
T Consensus        27 R~lKD~lvv~~~~~ga-e~i~fLk~~~~lp~~~~~~~ly~~l~~~--~~~~~lf~~~~~~F~~~f~lF~~vl~p~~~~~~  103 (472)
T TIGR00769        27 RDTKDTLVVTAKGSGA-EIIPFLKTWVVVPMAVIFMLIYTKLSNI--LSKEALFYTVISPFLGFFALFAFVIYPLSDLLH  103 (472)
T ss_pred             HhhhhheeecccCCch-hhHHHHHHHHHHHHHHHHHHHHHHHHhc--CCHHHhHHHHHHHHHHHHHHHHHHHhcchhhcC
Confidence            455666666432  11 33488888887777777 8999999999  999999988777777666665554    1    


Q ss_pred             -----------------------cHHHHHHHHHHhhccchhhHh-hhhhheeeeecCcchhHHHHHHHHHHHHHHHHHHH
Q 039541          171 -----------------------NIWIYSTIRFVAGFFRAPIMT-SVIVLLSEMVSKRWRGQVVIIGFTFFSFGLVSLPA  226 (521)
Q Consensus       171 -----------------------~~~~l~~~r~l~G~~~g~~~~-~~~~~i~~~~~~~~rg~~~~~~~~~~~~G~~i~~~  226 (521)
                                             +.|..-+..+...+-...... .-..++.|.+..++-.|..+++..+.++|.++++.
T Consensus       104 p~~~~~~~~~~~~~~~~~~i~~~~~W~~~~FYv~~elw~~~vvS~lFW~fandi~t~~qakRfy~l~~~ganlg~i~sg~  183 (472)
T TIGR00769       104 PTALADKLLSLLPPGFMGFIAILRIWSFALFYVMAELWGSVVLSLLFWGFANQITTIDEAKRFYALFGLGANVALIFSGR  183 (472)
T ss_pred             CcHHHHHHHhhcchhhHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                                   123333444455555455554 67789999999999999999999999999999997


Q ss_pred             H-HHhhc--------CCchh----HHHHHHHHHHHHHHhhhceeeecchhHHHhcCCHHHHHHHHHHHhhhcCCCCCCCc
Q 039541          227 V-AYLSR--------GSSWK----MLYVWTSIPSIVCCIIIYPFISESPRWLFIHGHEAEAMAVLKRLASRSNYQSDYGL  293 (521)
Q Consensus       227 i-~~~~~--------~~~wr----~~f~~~~~~~~~~~~~~~~~~~esp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  293 (521)
                      + .++.+        ...|.    ..+.+.++..++.. .+...+.+..   ..+.+.                   .  
T Consensus       184 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~~-~~~~~l~~~~---~~~~~~-------------------~--  238 (472)
T TIGR00769       184 TIKYFSKLRASLGPGVDGWHVSLKNLMVIVICSGLAII-LLYWWVNRNV---LTDPRS-------------------Y--  238 (472)
T ss_pred             HHHHHHHhhhccccccChHHHHHHHHHHHHHHHHHHHH-HHHHHHHhcc---cCCccc-------------------c--
Confidence            7 55441        12342    23333333333333 3332221100   000000                   0  


Q ss_pred             cccccCCCCCccccCCCcccccccHHHHhccHHHHHHHHHHHHHHHHHHHHHHhHHhhccCCCccH-------HHHHHHH
Q 039541          294 ESCCLSNMPPKAKNVIPKLDLYSSLKDLFNRKWALRRLLTIMALAFGIGVVYFGLLLGVGNLSFNI-------YLSLAFN  366 (521)
Q Consensus       294 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~  366 (521)
                       +.+     .++++++++.+..++++.++++|.++...+...+.....+..++..-....+...++       .......
T Consensus       239 -~~~-----~~~~k~k~k~~~~es~k~i~~S~yL~~ia~~vi~y~~~~nlve~~~k~~v~~~~p~~~~~~~f~g~~~~~~  312 (472)
T TIGR00769       239 -NPA-----LKEKKVKPKMSTMESLKFLVSSPYILDLALLVIAYGISINLVEVTWKSKLKAQYPSPNEYSAFMGDFSTWT  312 (472)
T ss_pred             -chh-----hccccCCCCCCHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Confidence             000     011112223444568899999998777777777777777766654322222211111       1122334


Q ss_pred             HHHhHhHHHHHHHHHhhcCCchHHHHHHH
Q 039541          367 GLLDIPAYLLTFILIERWSRKSSILTFCI  395 (521)
Q Consensus       367 ~~~~~~~~~~~g~l~dr~g~~~~~~~~~~  395 (521)
                      ++..++..++.+++.+|+|-+....+.=+
T Consensus       313 gi~tl~~~l~~~~l~~~~Gw~~~a~i~Pi  341 (472)
T TIGR00769       313 GVVSVTMMLLSGNVIRKYGWLTAALITPL  341 (472)
T ss_pred             HHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence            45555566667999999998765544333

These proteins are members of the ATP:ADP Antiporter (AAA) Family (TC 2.A.12), which consists of nucleotide transporters that have 12 GES predicted transmembrane regions. One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers.

>KOG3810 consensus Micronutrient transporters (folate transporter family) [Coenzyme transport and metabolism]

Probab=98.87  E-value=4.6e-08  Score=88.44  Aligned_cols=363  Identities=13%  Similarity=0.050  Sum_probs=214.4

Q ss_pred             eecceeeCCccccchhhHHHHHHHHHHhhhhhhhccccCCCCchHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHhhcc
Q 039541          106 SDWSLECAGSSILSGLPSSCFFIGCLLGGLALSTLGDSSSLGRKKLLFLSCFAMSITALATIFANNIWIYSTIRFVAGFF  185 (521)
Q Consensus       106 ~~~~~~~~~~~~~~~~~~s~~~lg~~i~~~~~g~l~dr~~~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~  185 (521)
                      .+-+++.++.   ..-+.-...-.+.+.-.+.=.+.|.  .-.||++++-.+......++..+.++.+.+=+.-++.|..
T Consensus        34 p~~NlT~~~l---~~evyPvwTYSYLv~LvpvFlLTD~--lrYKPvivlq~ls~v~~w~~lv~g~sV~~mQvlE~FyG~~  108 (433)
T KOG3810|consen   34 PDKNLTEDQL---TNEVYPVWTYSYLVGLVPVFLLTDY--LRYKPVVVLQALSGVPVWIMLVFGPSVKAMQVLEFFYGPA  108 (433)
T ss_pred             CCCCccHHHH---hcccccchhHHHHHHHHHHHHHhhh--hhcceeeeeeccchhHHHHHHHhcCCchheeeehhhcChH
Confidence            3445555443   1223333444555666677779998  8889999988888888888888999999999999999998


Q ss_pred             chhhHhhhhhheeeeecCcchhHHHHHHHHHHHHHHHHHHHHHHhhc---CCchhHHHHHHHHHHHHHHhhhceeeecch
Q 039541          186 RAPIMTSVIVLLSEMVSKRWRGQVVIIGFTFFSFGLVSLPAVAYLSR---GSSWKMLYVWTSIPSIVCCIIIYPFISESP  262 (521)
Q Consensus       186 ~g~~~~~~~~~i~~~~~~~~rg~~~~~~~~~~~~G~~i~~~i~~~~~---~~~wr~~f~~~~~~~~~~~~~~~~~~~esp  262 (521)
                      .+ ...+-++|+-+..+|+++.++.+...+..-.|...|..++-++-   ..+.+..-.+......+.. +..+++|..+
T Consensus       109 tA-aEIAYysYIYs~Vd~~~Yqrvt~y~RaA~L~g~~~g~vlaQlLvs~~~~sy~~LN~ISL~~~~ia~-~~A~fLP~v~  186 (433)
T KOG3810|consen  109 TA-AEIAYYSYIYSKVDPEMYKRVTGYCRAAFLVGKFVGSVLAQLLVSLETLSYTTLNYISLAEVTIAV-LLALFLPRVK  186 (433)
T ss_pred             HH-HHHhhhheeeeecCHHHHHHHHHHhHHHHHHHhHHHhHHHHHHhhhcccchhhhchhhHHHHHHHH-HHHhhCCCCc
Confidence            76 77888999999999999999999999999999988888864432   2334444444333333333 5556777765


Q ss_pred             hHHHhcCCHHHHHHHHHHHhhhcCCCCCCCccccccCCCCCccccCC----CcccccccHHHHhccHHHHHHHHHHHHHH
Q 039541          263 RWLFIHGHEAEAMAVLKRLASRSNYQSDYGLESCCLSNMPPKAKNVI----PKLDLYSSLKDLFNRKWALRRLLTIMALA  338 (521)
Q Consensus       263 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~l~~~~~~~~~~~~~~~~~  338 (521)
                      +.+.-+.+.++.           +        ..+.++...+.+...    .-...+..+.+..++|.++...+-..+..
T Consensus       187 rSl~f~~~~~~~-----------~--------v~~~e~~~~~~~~~~~l~~~~~~l~~~l~~~y~np~ll~WSlWwAl~s  247 (433)
T KOG3810|consen  187 RSLYFHRLEDKI-----------S--------VGDLEEMNPQASYMSYLRGAFVLLWRDLQECYSNPRLLKWSLWWALAS  247 (433)
T ss_pred             hhhhhhcccccc-----------e--------eccchhcCccchhhHHHHHHHHHHHHHHHHHhcCchhhhhHHHHHHhh
Confidence            433322221110           0        000011111100000    00011224556667777655544444444


Q ss_pred             HHH-HHHHHhHHhhccCCCccH----HHHHHHHHHHhHhHHHHHHHHHhhcCCchH--HHHHHHHHHHHHHHHHhcCCch
Q 039541          339 FGI-GVVYFGLLLGVGNLSFNI----YLSLAFNGLLDIPAYLLTFILIERWSRKSS--ILTFCILSGTCSAICVAIGDEQ  411 (521)
Q Consensus       339 ~~~-~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~--~~~~~~~~~i~~~~~~~~~~~~  411 (521)
                      .+. ...+|...++-+....+.    +..-.+..+.+.++.+..|.+.-++.|+.-  +.++.+..+-..+.+....  +
T Consensus       248 cg~~QV~nY~Q~LW~~~~~~~~~vyNG~veAv~tlLGa~~~~~~g~l~i~w~r~g~~ll~~~s~~~agllf~m~~t~--~  325 (433)
T KOG3810|consen  248 CGYYQVTNYTQILWKEVAPNPANVYNGAVEAVSTLLGAIAALAAGYLNINWNRWGDLLLAVGSAVQAGLLFIMAQTQ--H  325 (433)
T ss_pred             chhHHHHHHHHHHHHhhCCCchhhhcCHHHHHHHHHHHHHHHHHHheeeccchhhHHHHHHHHHHhhhhhhhhhccc--c
Confidence            443 344444444432212111    111234445666777888888777766633  3333333333333333322  2


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhccccCchhhhhhhHHHHHhhhhhhhHHHHHH----Hh--h----ccchhHHHHH
Q 039541          412 EVLQIGLELASFFSACVAFNVLLVFGTELFTTCVRNSTTSLVRQAVNLGAAFSPVLI----SA--G----RQNEFLSFGV  481 (521)
Q Consensus       412 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~p~~~----~~--~----~~~~~~~~~~  481 (521)
                      .|+.++..+++...+....++...-+++....+.-|...|+..++.-+-..+-..++    |.  .    ..-+...|++
T Consensus       326 Iw~~Ya~yvlfr~~y~l~itiA~~~iA~nL~~e~~gLvFGiNTFvAl~lQsilT~iVvd~~g~~L~ir~Q~~~Y~~Yf~v  405 (433)
T KOG3810|consen  326 IWVCYAGYVLFRVIYQLTITIATFQIARNLSSELFGLVFGINTFVALILQSILTLIVVDDRGLGLDIRTQFVVYSSYFIV  405 (433)
T ss_pred             eehhhhhHHHHHhhHhhhhhHHHHHHHHhhhhhhheeeeehHHHHHHHHHHhheEEEEcccccCCCcceeEEEEeehHHH
Confidence            378888888888888888887777777777777778899988876644443333332    11  0    0124556778


Q ss_pred             HHHHHHHHhHhhhcc
Q 039541          482 FGLVVFCFGFFVVFL  496 (521)
Q Consensus       482 ~~~~~~~~~~~~~~~  496 (521)
                      ++++.++........
T Consensus       406 ~~~i~~~~~~~~~~~  420 (433)
T KOG3810|consen  406 LGVIFLIGFGIEYLM  420 (433)
T ss_pred             HHHHHHHHHHHHHHH
Confidence            888877776554333

>PRK09848 glucuronide transporter; Provisional

Probab=98.86  E-value=6.9e-08  Score=96.73  Aligned_cols=123  Identities=11%  Similarity=0.024  Sum_probs=97.8

Q ss_pred             eeeecceeeCCccccchhhHHHHHHHHHHhhhhhhhccccCCCCchHHHHHHHHHHHHHHHHHhccc--cHHHHHHHHHH
Q 039541          104 IISDWSLECAGSSILSGLPSSCFFIGCLLGGLALSTLGDSSSLGRKKLLFLSCFAMSITALATIFAN--NIWIYSTIRFV  181 (521)
Q Consensus       104 i~~~~~~~~~~~~~~~~~~~s~~~lg~~i~~~~~g~l~dr~~~Grr~~l~~~~~~~~~~~~~~~~~~--~~~~l~~~r~l  181 (521)
                      +++.+|.+....    ++......++..++.++++++.||  +|+|+++.++.++.+++.++..+.+  +++.+++..++
T Consensus       255 ~~~~~g~~~~~~----~~~~~~~~~~~~~~~~l~~~l~~r--~g~~~~~~~g~~~~~i~~~~~~~~~~~~~~~~~~~~~l  328 (448)
T PRK09848        255 VRYVLNDTGLFT----VLVLVQNLVGTVASAPLVPGMVAR--IGKKNTFLIGALLGTCGYLLFFWVSVWSLPVALVALAI  328 (448)
T ss_pred             EeeecCChHHHH----HHHHHHHHHHHHHHHHHHHHHHHH--hCcHHHHHHHHHHHHHHHHHHHHcCchhHHHHHHHHHH
Confidence            344566554222    444444567788899999999999  9999999999999888888777654  67777788899


Q ss_pred             hhccchhhHhhhhhheeeeecCc-------chhHHHHHHHHHHHHHHHHHHHH-HHhhc
Q 039541          182 AGFFRAPIMTSVIVLLSEMVSKR-------WRGQVVIIGFTFFSFGLVSLPAV-AYLSR  232 (521)
Q Consensus       182 ~G~~~g~~~~~~~~~i~~~~~~~-------~rg~~~~~~~~~~~~G~~i~~~i-~~~~~  232 (521)
                      .|+|.+...+...++++|..|.+       ++|...++.+....+|..+++.+ +.++.
T Consensus       329 ~g~G~~~~~~~~~al~~~~~~~~~~~~g~r~~G~~~~~~~~~~klg~aig~~i~g~~l~  387 (448)
T PRK09848        329 ASIGQGVTMTVMWALEADTVEYGEYLTGVRIEGLTYSLFSFTRKCGQAIGGSIPAFILG  387 (448)
T ss_pred             HHHHHHHHHHHHHHHHHHhhhhhHHhhCccchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999988754       45999999999999999999887 55543

>KOG2504 consensus Monocarboxylate transporter [Carbohydrate transport and metabolism]

Probab=98.86  E-value=5e-09  Score=104.50  Aligned_cols=152  Identities=14%  Similarity=0.197  Sum_probs=135.9

Q ss_pred             CcceeeecceeeCCccccchhhHHHHHHHHHHhhhhhhhccccCCCC--chHHHHHHHHHHHHHHHHHhccccHHHHHHH
Q 039541          101 DTTIISDWSLECAGSSILSGLPSSCFFIGCLLGGLALSTLGDSSSLG--RKKLLFLSCFAMSITALATIFANNIWIYSTI  178 (521)
Q Consensus       101 ~~~i~~~~~~~~~~~~~~~~~~~s~~~lg~~i~~~~~g~l~dr~~~G--rr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~  178 (521)
                      +|...++.+.+..+.    +.+.++..+...++.++.|+++|+  ..  ++.+..+++++.+++.+.++++++++.++..
T Consensus       321 l~~~~~~~g~~~~~a----a~l~Siigi~~i~gRi~~G~laD~--~~~~~~~~~~~~ll~~gl~~~~~p~~~~~~~l~~~  394 (509)
T KOG2504|consen  321 LPSYAKSLGLSSNDA----AFLLSIIGVSDIIGRIILGLLADK--PGIRALVLFLLTLLIAGLARLFLPFATTYVGLIVF  394 (509)
T ss_pred             HHHHHhhcCCChhhh----HHHHHHHHHhhhhhhhhhhhhcCc--cccchHHHHHHHHHHHHHHHHHHHHhccHHHHHHH
Confidence            778888999999887    999999999999999999999999  66  5666788999999999999999999999999


Q ss_pred             HHHhhccchhhHhhhhhheeeeecCcchhHHHHHHHHHHHHHHHHHHHH-HHhhcCCc-hhHHHHHHHHHHHHHHhhhce
Q 039541          179 RFVAGFFRAPIMTSVIVLLSEMVSKRWRGQVVIIGFTFFSFGLVSLPAV-AYLSRGSS-WKMLYVWTSIPSIVCCIIIYP  256 (521)
Q Consensus       179 r~l~G~~~g~~~~~~~~~i~~~~~~~~rg~~~~~~~~~~~~G~~i~~~i-~~~~~~~~-wr~~f~~~~~~~~~~~~~~~~  256 (521)
                      -.+.|++.|.........+.|+.+.++-..+.|+.....+++.++||.+ |++.+..+ |...|+..++..++.. ++++
T Consensus       395 ~~~fG~~~g~~~~l~~~i~~~~~g~~~l~~a~Gl~l~~~gi~~l~gpPiag~~~d~tg~Y~~~f~~~g~~~~~s~-~~~~  473 (509)
T KOG2504|consen  395 SILFGFCVGSFSSLTPVILVDLVGLEKLSNAYGLLLLFQGIGALVGPPIAGLLYDITGNYDHAFYFCGLCFLLSA-VLLL  473 (509)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHcChhhcchHHHHHHHHhHHHHHcCcccceeeeeccCCeeeehhhcChHHHHHH-HHHH
Confidence            9999999999888888899999999999999999999999999999888 66666555 9999999998888887 6666


Q ss_pred             eee
Q 039541          257 FIS  259 (521)
Q Consensus       257 ~~~  259 (521)
                      ..|
T Consensus       474 ~~~  476 (509)
T KOG2504|consen  474 ILR  476 (509)
T ss_pred             HhH
Confidence            555

>TIGR00806 rfc RFC reduced folate carrier

Probab=98.85  E-value=1.9e-07  Score=90.15  Aligned_cols=152  Identities=13%  Similarity=-0.017  Sum_probs=114.0

Q ss_pred             HHHhHHhhccCCCccHHH-HH---HHHHHHhHhHHHHHHHHHhhcCCchHHHHHHHHHHHHHHHHHhcCCchHHHHHHHH
Q 039541          344 VYFGLLLGVGNLSFNIYL-SL---AFNGLLDIPAYLLTFILIERWSRKSSILTFCILSGTCSAICVAIGDEQEVLQIGLE  419 (521)
Q Consensus       344 ~~~~~~~~~~~~~~~~~~-~~---~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~  419 (521)
                      ..+..|++.++++.+... .+   .....+-.+..+.+|+++||+|.|+++.++.+...+..++.++....  ..+.+.-
T Consensus        45 ~s~a~p~L~~elglT~~qv~G~I~s~F~ysYal~qIp~GlLaDrlG~K~vL~l~~l~Wsl~t~L~~fa~Sl--~~L~i~R  122 (511)
T TIGR00806        45 ESFITPYLLTVLNFTEETVTNEIIPVLPYSHLAVLVPVFLLTDYLRYKPVLVLQALSFVCVWLLLLLGTSV--WHMQLME  122 (511)
T ss_pred             HHHHHHHHHHHcCCCHHHhcchHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHH
Confidence            334566777777766544 33   33445666888999999999999999999999999998888875443  6778888


Q ss_pred             HHHHHHHHHHHHHHHHhhccccCchhhhhhhHHHHHhhhhhhhHHHHHHHhh-ccc---hhHHHHHHHHHHHHHhHhhhc
Q 039541          420 LASFFSACVAFNVLLVFGTELFTTCVRNSTTSLVRQAVNLGAAFSPVLISAG-RQN---EFLSFGVFGLVVFCFGFFVVF  495 (521)
Q Consensus       420 ~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~p~~~~~~-~~~---~~~~~~~~~~~~~~~~~~~~~  495 (521)
                      ++.|++.+..+ ....++...+|+++|+++.|+.+....+|.++++.+.++. ..+   +.....+......++.+..++
T Consensus       123 ~llGvaEA~~~-A~~syI~~WfP~kER~ratsi~~sg~~vG~~Ia~~L~qll~s~gWr~y~~Ln~Isl~s~~~a~~~a~~  201 (511)
T TIGR00806       123 VFYSVTMAARI-AYSSYIFSLVPPSRYQRAAAYSRAAVLLGVFLSSVLGQLLVTLGWISYSTLNIISLVFMTFSVFLALF  201 (511)
T ss_pred             HHHHHHHHHHH-HHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHh
Confidence            99999999999 9999999999999999999999999999999998888752 112   222222333344445555677


Q ss_pred             ccc
Q 039541          496 LPE  498 (521)
Q Consensus       496 ~~~  498 (521)
                      +|.
T Consensus       202 LP~  204 (511)
T TIGR00806       202 LKR  204 (511)
T ss_pred             CCC
Confidence            763

Proteins of the RFC family are so-far restricted to animals. RFC proteins possess 12 putative transmembrane a-helical spanners (TMSs) and evidence for a 12 TMS topology has been published for the human RFC. The RFC transporters appear to transport reduced folate by an energy-dependent, pH-dependent, Na+-independent mechanism. Folate:H+ symport, folate:OH- antiport and folate:anion antiport mechanisms have been proposed, but the energetic mechanism is not well defined.

>PF03825 Nuc_H_symport: Nucleoside H+ symporter

Probab=98.84  E-value=1.2e-07  Score=92.37  Aligned_cols=150  Identities=10%  Similarity=0.103  Sum_probs=118.3

Q ss_pred             eecc-eeeCCccccchhhHHHHHHHHHHhhhhhhhccccCCCCchHHHHHHHHHHHHHHHHHhcc-ccHHHHH----HHH
Q 039541          106 SDWS-LECAGSSILSGLPSSCFFIGCLLGGLALSTLGDSSSLGRKKLLFLSCFAMSITALATIFA-NNIWIYS----TIR  179 (521)
Q Consensus       106 ~~~~-~~~~~~~~~~~~~~s~~~lg~~i~~~~~g~l~dr~~~Grr~~l~~~~~~~~~~~~~~~~~-~~~~~l~----~~r  179 (521)
                      ++.| .+.+..    +.+.+...++-++.-...+++..|  +|.|+++.++.+.+++=..+.+.. ++.+...    +..
T Consensus       235 ~~~gg~~~~~~----g~~~~l~~~aEi~~f~~~~~~~~r--~g~~~ll~~a~~~~~vR~~l~a~~~~~~~~~~~~~~l~q  308 (400)
T PF03825_consen  235 QELGGYSGSTI----GILWALGVVAEIPFFFFSGRFLKR--FGIKWLLLLALVAYAVRWLLYAYFSDPWPFIVALQLLGQ  308 (400)
T ss_pred             HHcccchhhHH----HHHHHHHHHHHHHHHHHHHHHHHh--cCHHHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHH
Confidence            4555 444333    767777777888888899999999  999999999999999998888887 5544433    345


Q ss_pred             HHhhccchhhHhhhhhheeeeecCcchhHHHHHHHH-HHHHHHHHHHHH-HHhhcCCc------hhHHHHHHHHHHHHHH
Q 039541          180 FVAGFFRAPIMTSVIVLLSEMVSKRWRGQVVIIGFT-FFSFGLVSLPAV-AYLSRGSS------WKMLYVWTSIPSIVCC  251 (521)
Q Consensus       180 ~l~G~~~g~~~~~~~~~i~~~~~~~~rg~~~~~~~~-~~~~G~~i~~~i-~~~~~~~~------wr~~f~~~~~~~~~~~  251 (521)
                      .++|+..|........++.+..|++.|+++.++++. ..++|..+|..+ |++.+.+|      |...+.+.+.+.++..
T Consensus       309 ~lhG~tf~~~~~a~~~yi~~~~p~~~~at~Q~l~~~~~~Glg~~iG~~igG~l~~~~g~~~~~~~~~~~~v~a~~~~~~~  388 (400)
T PF03825_consen  309 LLHGLTFGLFHAASVRYIDRIAPPELRATAQGLYSALSFGLGGAIGSLIGGWLYDAFGARGMFDWSAVFLVFAVMALVIL  388 (400)
T ss_pred             hhhhHHHHHHHHHHHHHHHHhCCccchHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhcchhhhhHHHHHHHHHHHHHHHH
Confidence            679999999999999999999999999999999876 467999999988 67766544      5566777777777777


Q ss_pred             hhhceeeecc
Q 039541          252 IIIYPFISES  261 (521)
Q Consensus       252 ~~~~~~~~es  261 (521)
                      ++.+++.+|+
T Consensus       389 ~~f~~~fk~~  398 (400)
T PF03825_consen  389 VLFVILFKPK  398 (400)
T ss_pred             HHHHhhccCC
Confidence            6666666664

>PF06963 FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 This entry represents the solute carrier family 40 member 1 family of proteins, also known as Ferroportin 1

Probab=98.84  E-value=2.7e-06  Score=82.55  Aligned_cols=327  Identities=11%  Similarity=0.023  Sum_probs=173.6

Q ss_pred             hhhHHHHHHHHHHhhhhhhhccccCCCCchHHHHHHHHHHHHHHHHHhc------c--c----cHH---HHHHHHHHhhc
Q 039541          120 GLPSSCFFIGCLLGGLALSTLGDSSSLGRKKLLFLSCFAMSITALATIF------A--N----NIW---IYSTIRFVAGF  184 (521)
Q Consensus       120 ~~~~s~~~lg~~i~~~~~g~l~dr~~~Grr~~l~~~~~~~~~~~~~~~~------~--~----~~~---~l~~~r~l~G~  184 (521)
                      +...-.-.+..++.++..|.+.||  ..|.++...+++..-++..+.+.      .  .    +-+   .+++.-.+.|.
T Consensus        41 siygl~~~~~~~~f~~~vG~~iD~--~~Rl~~~~~~l~~Qn~sv~~s~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~  118 (432)
T PF06963_consen   41 SIYGLVRSLSAILFGPWVGRWIDR--SPRLKVIRTSLVVQNLSVAASCALFLLLLSYPSSSSQSSWLFIALFALLILLGA  118 (432)
T ss_pred             HHHHHHHHHHHHHhhHHHHHHHhC--CcchhhHHHHHHHHHHHHHHHHHHHHHHHhCCccccccchHHHHHHHHHHHHHH
Confidence            333344456667788889999999  99999877765544333332211      1  1    112   22222222222


Q ss_pred             cchhhHh-hhhhheeeee------cCcchhHHHHHHHHHHHHHHHHHHHH-HHhhcCCchhHHHHHHHHHHHHHHhhhce
Q 039541          185 FRAPIMT-SVIVLLSEMV------SKRWRGQVVIIGFTFFSFGLVSLPAV-AYLSRGSSWKMLYVWTSIPSIVCCIIIYP  256 (521)
Q Consensus       185 ~~g~~~~-~~~~~i~~~~------~~~~rg~~~~~~~~~~~~G~~i~~~i-~~~~~~~~wr~~f~~~~~~~~~~~~~~~~  256 (521)
                      -.-.... ...+.=.||.      +++.+.+.++...-.--+..+++|++ |.+....+.+....+.+...++..++=++
T Consensus       119 i~~Las~~~~iavERDWVvvi~~~~~~~La~~NA~mRRIDL~ckllaPl~vG~l~t~~s~~~~~~~i~~~N~~S~~vEy~  198 (432)
T PF06963_consen  119 IERLASIANTIAVERDWVVVIAGGDPGALARMNATMRRIDLFCKLLAPLFVGLLMTFASPVIAAIFIAGWNLASVFVEYF  198 (432)
T ss_pred             HHHHHHhhhhheeccchhhhhcCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCHHHHHHHHHHHHHHHHHHHHH
Confidence            1111111 1112222442      34555666777766777788999998 77777788888888888887777644444


Q ss_pred             eeec----chhHHHhcCCHHHHHHHHHHHhhhcCCCCCCCccccccCCCCCccccC-------CCcccccccHHHHhccH
Q 039541          257 FISE----SPRWLFIHGHEAEAMAVLKRLASRSNYQSDYGLESCCLSNMPPKAKNV-------IPKLDLYSSLKDLFNRK  325 (521)
Q Consensus       257 ~~~e----sp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~l~~~~  325 (521)
                      ++..    .|. +..+++.++                ++...+.+  +...+.++.       ..-.+....++..++.+
T Consensus       199 ~l~~VY~~~P~-L~~~~~~~~----------------~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~w~~Y~~q~  259 (432)
T PF06963_consen  199 LLARVYNSVPA-LAVKKRSSE----------------SESSSDEE--SSSESSSDPSILKRLWNPLRTIIRGWRTYFRQP  259 (432)
T ss_pred             HHHHHHHhChH-hcCCCCCcc----------------cccccccc--ccccccchhhHHHHHHHHHHHHhccHHHHHhCH
Confidence            3321    121 100100000                00000000  000000000       00011123556666776


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhHHhhccCCCccHHHHH---HHHHHHhHhHHHHHHHHHhhcCCchHHHHHHHHHHHHHH
Q 039541          326 WALRRLLTIMALAFGIGVVYFGLLLGVGNLSFNIYLSL---AFNGLLDIPAYLLTFILIERWSRKSSILTFCILSGTCSA  402 (521)
Q Consensus       326 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~i~~~  402 (521)
                      .+...+...+++....++-. .+.-++...|.+....+   ....+.++.|+++..++.+|+|..+.-.++.....+++.
T Consensus       260 vflas~alalLY~TVLsf~~-lmt~yl~~~G~s~~~igi~R~~gav~Gl~gT~~~p~l~~riGlvr~G~~~l~~q~~~L~  338 (432)
T PF06963_consen  260 VFLASFALALLYFTVLSFGG-LMTAYLKSQGYSPSVIGIFRGLGAVFGLLGTWVYPWLMKRIGLVRAGLWSLWWQWVCLA  338 (432)
T ss_pred             HHHHHHHHHHHHHHHhcCcH-HHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHH
Confidence            65544444443333222222 22333334466665544   445577888999999999999988876666654443322


Q ss_pred             H---HHhcCCch--H---HHHHHHHHHHHHHHHHHHHHHHHhhccccCchhhhhhhHHHHHhhhhhhhHHHHHH
Q 039541          403 I---CVAIGDEQ--E---VLQIGLELASFFSACVAFNVLLVFGTELFTTCVRNSTTSLVRQAVNLGAAFSPVLI  468 (521)
Q Consensus       403 ~---~~~~~~~~--~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~p~~~  468 (521)
                      +   ..+.+..+  .   ..+....++.-+|.-+.--...-+..|..|+++||...|+-+...++.-.+.-.+.
T Consensus       339 ~~v~~~~~~~~~~~~~s~~~l~~gi~~SR~GLW~fDL~~~qi~Qe~V~~~~Rg~v~gvq~sl~~lf~ll~~~~~  412 (432)
T PF06963_consen  339 LCVVSFWAPGSPFSSISAYLLLGGIALSRIGLWSFDLAVTQIMQENVPESERGAVSGVQNSLQSLFELLSFVLT  412 (432)
T ss_pred             HHHHHHhcCCCCchhhHHHHHHHHHHHHHHHHHhhhHHHHHhhcccCCHHHhhHHHHHHHHHHHHHHHHHHHHH
Confidence            2   22333322  1   23333444444444444457778899999999999999999998877766554444

It is thought to be involved in iron export from duodenal epithelial cells and also in transfer of iron between maternal and fetal circulation. This family of proteins is known to be localised in the basolateral membrane of polarized epithelial cells [].; GO: 0005381 iron ion transmembrane transporter activity, 0034755 iron ion transmembrane transport, 0016021 integral to membrane

>PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional

Probab=98.83  E-value=2.6e-08  Score=111.83  Aligned_cols=141  Identities=14%  Similarity=0.143  Sum_probs=113.7

Q ss_pred             eeeecceeeCCccccchhhHHHHHHHHHHhhhhhhhccccCCCCchHHHHHHHHHHHHHHHHHhcc--------------
Q 039541          104 IISDWSLECAGSSILSGLPSSCFFIGCLLGGLALSTLGDSSSLGRKKLLFLSCFAMSITALATIFA--------------  169 (521)
Q Consensus       104 i~~~~~~~~~~~~~~~~~~~s~~~lg~~i~~~~~g~l~dr~~~Grr~~l~~~~~~~~~~~~~~~~~--------------  169 (521)
                      +.+.+|.+..+.    |++.+.+.+|.++++++.|+++|+  .++++.+..+.++.+++.+..++.              
T Consensus       252 ~~~~~g~~~~~~----g~~~~~~~~g~~ig~~~~g~l~~~--~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~  325 (1140)
T PRK06814        252 AKETLGGDENVA----TLFLAVFSVGVAVGSFLASKLSEG--RITLLYVPIGALLMGLFGLDLAFASSSVPAEPAQLKSI  325 (1140)
T ss_pred             HHHHcCCchHHH----HHHHHHHHHHHHHHHHHHHHHhCC--ceeeeeehHHHHHHHHHHHHHHhcccccccccccccch
Confidence            345578887555    999999999999999999999998  888877776666666665544443              


Q ss_pred             ------ccHHHHHHHHHHhhccchhhHhhhhhheeeeecCcchhHHHHHHHHHHHHHHHHHHHH-HHhh-cCCchhHHHH
Q 039541          170 ------NNIWIYSTIRFVAGFFRAPIMTSVIVLLSEMVSKRWRGQVVIIGFTFFSFGLVSLPAV-AYLS-RGSSWKMLYV  241 (521)
Q Consensus       170 ------~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~rg~~~~~~~~~~~~G~~i~~~i-~~~~-~~~~wr~~f~  241 (521)
                            ++.+.+++..++.|++.+...+...+++.+.+|+++||+++|+.++...+|..+++++ +.+. ...++...++
T Consensus       326 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~G~v~g~~~~~~~~~~~ig~~~~g~l~~~~~~~~~~~~  405 (1140)
T PRK06814        326 LVFLSKRHGWRILIDLFGLAAAGGLYIVPLFAALQAWANPAHRARVIAANNVLNAAFMVAGTIILALLQALGFSIPWIIL  405 (1140)
T ss_pred             hhhhcccccHHHHHHHHHHHHHHHHhHHHHHHHHHhhCCcccceeeeHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHH
Confidence                  6778888899999999999999999999999999999999999999999999999888 5554 3456777666


Q ss_pred             HHHHHHHHH
Q 039541          242 WTSIPSIVC  250 (521)
Q Consensus       242 ~~~~~~~~~  250 (521)
                      +.++..++.
T Consensus       406 ~~~~~~~~~  414 (1140)
T PRK06814        406 FIALANLIV  414 (1140)
T ss_pred             HHHHHHHHH
Confidence            655544433

>KOG3764 consensus Vesicular amine transporter [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.83  E-value=2.1e-08  Score=92.61  Aligned_cols=136  Identities=14%  Similarity=0.062  Sum_probs=118.2

Q ss_pred             HHHHHHHHHHhHhHHHHHHHHHhhcCCchHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 039541          360 YLSLAFNGLLDIPAYLLTFILIERWSRKSSILTFCILSGTCSAICVAIGDEQEVLQIGLELASFFSACVAFNVLLVFGTE  439 (521)
Q Consensus       360 ~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  439 (521)
                      ........+.+++.+++.|.+.||+|+|..+++|+.++..+.+++.+....  +...+.=.+-|++.........++.++
T Consensus       109 G~LFaskA~~qllvnp~~G~l~~~iGy~ipm~~Gl~vmf~sTilFafg~sy--~~l~vAR~LQgvgsA~~~tsglamlAd  186 (464)
T KOG3764|consen  109 GLLFASKALVQLLVNPFFGNLIDRIGYKIPMVAGLFVMFLSTILFAFGNSY--PMLFVARSLQGVGSAFADTSGLAMLAD  186 (464)
T ss_pred             hHHHHHHHHHHHHhcccchhhHHHhccccHHHHHHHHHHHHHHHHHHcchh--HHHHHHHHHhhhhHHHHHhhhHHHHHH
Confidence            344455668889999999999999999999999999999999999987666  577778888999999999999999999


Q ss_pred             ccCchh-hhhhhHHHHHhhhhhhhHHHHHHHh--hccchhHHHHHHHHHHHHHhHhhhccc
Q 039541          440 LFTTCV-RNSTTSLVRQAVNLGAAFSPVLISA--GRQNEFLSFGVFGLVVFCFGFFVVFLP  497 (521)
Q Consensus       440 ~~~~~~-r~~~~~~~~~~~~~g~~~~p~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~  497 (521)
                      .+|++. |+.++|+.-.+..+|-.++|.++|.  ...+...+|+++++++++...+-+++-
T Consensus       187 ~f~~d~er~~vmGialgfislG~lvgPpfGGilYe~~Gk~aPFlVL~~v~Lld~~L~l~vi  247 (464)
T KOG3764|consen  187 VFPEDNERGSVMGIALGFISLGVLVGPPFGGILYEFAGKSAPFLVLAIVLLLDGALQLLVI  247 (464)
T ss_pred             HcccchhhhHHHHHHHHHHhccceecCCcccchHhhcCCcCcHHHHHHHHHHHHHHHHhee
Confidence            999876 6999999999999999999999986  446789999999999998887765553

>PRK10133 L-fucose transporter; Provisional

Probab=98.83  E-value=2.9e-07  Score=91.57  Aligned_cols=128  Identities=13%  Similarity=-0.077  Sum_probs=98.0

Q ss_pred             HHHHHhHHhhccCCCccHHHHH---HHHHHHhHhHHHHHHHHHhhcCCchHHHHHHHHHHHHHHHHHhc-CCchHHHHHH
Q 039541          342 GVVYFGLLLGVGNLSFNIYLSL---AFNGLLDIPAYLLTFILIERWSRKSSILTFCILSGTCSAICVAI-GDEQEVLQIG  417 (521)
Q Consensus       342 ~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~i~~~~~~~~-~~~~~~~~~~  417 (521)
                      .......|.+.++++.+.....   ....++..++.++.|++.||+|||+++..+..+..++.+++... ...+.+...+
T Consensus        43 ~~~~~~~p~i~~~~~~s~~~~gl~~~~~~~g~~i~~~~~g~l~dr~G~r~~l~~g~~~~~~~~~l~~~~~~a~~~~~ll~  122 (438)
T PRK10133         43 NLNDILLPQFQQAFTLTNFQAGLIQSAFYFGYFIIPIPAGILMKKLSYKAGIITGLFLYALGAALFWPAAEIMNYTLFLV  122 (438)
T ss_pred             HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHH
Confidence            3444556776666776654433   44567778899999999999999999999999999988765321 1222256777


Q ss_pred             HHHHHHHHHHHHHHHHHHhhccccCchhhhhhhHHHHHhhhhhhhHHHHHHH
Q 039541          418 LELASFFSACVAFNVLLVFGTELFTTCVRNSTTSLVRQAVNLGAAFSPVLIS  469 (521)
Q Consensus       418 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~p~~~~  469 (521)
                      ..++.|++.+...+....++.|..|++.|+..+++......+|..++|.+.+
T Consensus       123 ~r~l~G~g~g~~~~~~~~~v~~~~~~~~~~~~~s~~~~~~~~G~~~g~~~g~  174 (438)
T PRK10133        123 GLFIIAAGLGCLETAANPFVTVLGPESSGHFRLNLAQTFNSFGAIIAVVFGQ  174 (438)
T ss_pred             HHHHHHHHHHHHHhhHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            8888999999998988888888877777767888999999999999988764

>KOG0255 consensus Synaptic vesicle transporter SVOP and related transporters (major facilitator superfamily) [General function prediction only]

Probab=98.82  E-value=3.6e-08  Score=100.82  Aligned_cols=137  Identities=15%  Similarity=0.058  Sum_probs=115.8

Q ss_pred             HHHHHHHHHhHhHHHHHHHHHhhcCCchHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Q 039541          361 LSLAFNGLLDIPAYLLTFILIERWSRKSSILTFCILSGTCSAICVAIGDEQEVLQIGLELASFFSACVAFNVLLVFGTEL  440 (521)
Q Consensus       361 ~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  440 (521)
                      ....+..++.++|.++.|.++||+|||+++.++.++..++.+..++.++.  +...+.-++.|++.++...+.+.+..|.
T Consensus       122 ~~~s~~~~G~~vG~~i~g~lsD~~GRk~~~~~~~~~~~i~~~~~a~a~~~--~~~~~~Rfl~G~~~~~~~~~~~~~~~E~  199 (521)
T KOG0255|consen  122 LGQSLFFLGVLVGSLIFGPLSDRFGRKPVLLVSLLLFIIFGILTAFAPNY--WMFLIFRFLSGFFGSGPLTVGFGLVAEI  199 (521)
T ss_pred             HHHHHHHHHHHHHHhhheehHhhcccHHHHHHHHHHHHHHHHHHHHhCcH--HHHHHHHHHHHhhccchhHHhHhhheee
Confidence            34455667888999999999999999999999999999999888887776  6888999999999999999999999999


Q ss_pred             cCchhhhhhhHHHHHhhhhhhhHHHHHHHhhccchhHHHHHHHHHHHHHhHhhhccccCC
Q 039541          441 FTTCVRNSTTSLVRQAVNLGAAFSPVLISAGRQNEFLSFGVFGLVVFCFGFFVVFLPETI  500 (521)
Q Consensus       441 ~~~~~r~~~~~~~~~~~~~g~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  500 (521)
                      ++++.|+.+..+ ......++.++|.+.++...++.+.+++..+..++..+.++..+|.+
T Consensus       200 ~~~~~R~~~~~~-~~~~~~~~~~~~~~~a~~~~~Wr~~~~~~~~~~~~~~~~~~l~~Es~  258 (521)
T KOG0255|consen  200 VSPKQRGLALTL-GGFFFVGGLMLPAGAAYITRDWRWLFWIISIPSGLFLLLWFLPPESP  258 (521)
T ss_pred             cCcchhhHHHHH-HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHccCcCh
Confidence            999999999999 77888888888888887655777777777777776666655555644

>TIGR01301 GPH_sucrose GPH family sucrose/H+ symporter

Probab=98.80  E-value=5.4e-07  Score=89.00  Aligned_cols=162  Identities=12%  Similarity=0.008  Sum_probs=106.0

Q ss_pred             HHHHHHHHhHHhhccCCCccHHHHH---HHHHHHhHhHHHHHHHHHh----hcCCchHHHHH-HHHHHHHHHHHHhcCCc
Q 039541          339 FGIGVVYFGLLLGVGNLSFNIYLSL---AFNGLLDIPAYLLTFILIE----RWSRKSSILTF-CILSGTCSAICVAIGDE  410 (521)
Q Consensus       339 ~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~g~l~d----r~g~~~~~~~~-~~~~~i~~~~~~~~~~~  410 (521)
                      ++........+.+++..+.+.....   .+..+..++..++.|+++|    |+|||+.++.+ .....++++++.+....
T Consensus        18 ~~~~l~~~~l~~yl~~lg~~~~~~~~i~~~~~l~~~i~~Pi~G~lSDr~~sr~GRRrp~il~g~~~~~~~l~ll~~~~~~   97 (477)
T TIGR01301        18 FGWALQLSLLTPYVQELGIPHAWASIIWLCGPLSGLLVQPLVGYLSDRCTSRFGRRRPFIAAGAALVAFAVILIGFAADI   97 (477)
T ss_pred             HHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHhHeeehhcCCCCCCCChHHHHHHHHHHHHHHHHHHHhCchh
Confidence            3333333344555667776654444   3445677788889999999    59999988775 55555555555554321


Q ss_pred             h------------H---HHHHHHHHHHHHHHHHHHHHHHHhhccccCchhh--hhhhHHHHHhhhhhhhHHHHHHHhhc-
Q 039541          411 Q------------E---VLQIGLELASFFSACVAFNVLLVFGTELFTTCVR--NSTTSLVRQAVNLGAAFSPVLISAGR-  472 (521)
Q Consensus       411 ~------------~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r--~~~~~~~~~~~~~g~~~~p~~~~~~~-  472 (521)
                      .            .   +...+...+..++.....+...+++.|..|+++|  +.+.++.+....+|+.+++.+.++.. 
T Consensus        98 ~~~~~~~~~~~~~~~~i~~~~i~~~lld~~~n~~~~p~rALiaDl~p~~~~~~~~a~~~~~~~~~lG~ilg~~~g~~~~~  177 (477)
T TIGR01301        98 GHLFGDNLDKKTKPRAIIVFVVGFWILDVANNMLQGPCRAFLADLTGGDARRTRIANAYFSFFMAIGNVLGYAAGAYSGL  177 (477)
T ss_pred             hhhccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence            0            0   1233344455567777778889999999998865  57899999999999999998876421 


Q ss_pred             ----------------cchhHHHHHHHHHHHHHhHh-hhccccCC
Q 039541          473 ----------------QNEFLSFGVFGLVVFCFGFF-VVFLPETI  500 (521)
Q Consensus       473 ----------------~~~~~~~~~~~~~~~~~~~~-~~~~~~~~  500 (521)
                                      .+....|.+.+++.+++.+. .+..+|..
T Consensus       178 ~~~~~~~~~~~~~~~~~~~~~~F~i~a~~l~i~~l~t~~~v~E~~  222 (477)
T TIGR01301       178 YKIFPFTKTEACGVSCANLKSCFLIDIILLAILTYIALSAVKENP  222 (477)
T ss_pred             HHhcccccccccccccchHHHHHHHHHHHHHHHHHHHeeeeeccC
Confidence                            13455677666666665554 45566653

This model represents sucrose/proton symporters, found in plants, from the Glycoside-Pentoside-Hexuronide (GPH)/cation symporter family. These proteins are predicted to have 12 transmembrane domains. Members may export sucrose (e.g. SUT1, SUT4) from green parts to the phloem for long-distance transport or import sucrose (e.g SUT2) to sucrose sinks such as the tap root of the carrot.

>KOG4332 consensus Predicted sugar transporter [Carbohydrate transport and metabolism]

Probab=98.79  E-value=3.4e-07  Score=79.92  Aligned_cols=340  Identities=13%  Similarity=0.059  Sum_probs=178.8

Q ss_pred             cceeeecceeeCCccccchhhHHHHHHHHHHhhhhhhhccccCCCCchHHHHHHHHHHHHHHHHHhccccHHHHHHHHHH
Q 039541          102 TTIISDWSLECAGSSILSGLPSSCFFIGCLLGGLALSTLGDSSSLGRKKLLFLSCFAMSITALATIFANNIWIYSTIRFV  181 (521)
Q Consensus       102 ~~i~~~~~~~~~~~~~~~~~~~s~~~lg~~i~~~~~g~l~dr~~~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l  181 (521)
                      -.+-++++....|.    |.+.-+..-...+...+.|-++|+  -|||+.-+.-.+.+.+++ +.-.++.|-.++++|.+
T Consensus        61 YyLYstYgFgkG~I----gqLfiaGfgSsmLFGtivgSLaDk--qGRKracvtycitYiLsC-iTKhSpqYkVLmVGR~L  133 (454)
T KOG4332|consen   61 YYLYSTYGFGKGDI----GQLFIAGFGSSMLFGTIVGSLADK--QGRKRACVTYCITYILSC-ITKHSPQYKVLMVGRVL  133 (454)
T ss_pred             eeeehhcCccCCcc----ceeeecccchHHHHHHHHHHHHhh--hccccceeeehHHHHHHH-HhhcCCceEEEeehhhh
Confidence            44567788888777    666666666666777788889999  999998776666665554 35577899999999999


Q ss_pred             hhccchhhHhhhhhh-eeeeecCcchhHHHHHHHH--------HHHHHHHHHHHHH-Hhhc--CCchhHHHHHHHHHHHH
Q 039541          182 AGFFRAPIMTSVIVL-LSEMVSKRWRGQVVIIGFT--------FFSFGLVSLPAVA-YLSR--GSSWKMLYVWTSIPSIV  249 (521)
Q Consensus       182 ~G~~~g~~~~~~~~~-i~~~~~~~~rg~~~~~~~~--------~~~~G~~i~~~i~-~~~~--~~~wr~~f~~~~~~~~~  249 (521)
                      -|+..+..+.+.-++ +.|.-+  +|+.---+...        +..+-.+++.+.| .+.+  ..|--.+|-..+.+..+
T Consensus       134 GGiaTsLLFSaFEsWliaEHne--kr~FeqqWls~TFskA~ffgNglvAiiaGlfgn~lvd~~slGPVAPFdAAacfLai  211 (454)
T KOG4332|consen  134 GGIATSLLFSAFESWLIAEHNE--KRGFEQQWLSVTFSKAVFFGNGLVAIIAGLFGNLLVDTFSLGPVAPFDAAACFLAI  211 (454)
T ss_pred             hhHHHHHHHHHHHHHHHHHhhh--ccCChHhhhhHHHHHHHHhhccHHHHHHHHHHHHHHHHhccCCCCchHHHHHHHHH
Confidence            999999988888774 566542  33322222211        1122222233332 2222  23444556544443333


Q ss_pred             HHhhhceeeecchhHHHhcCCHHHHHHHHHHHhhhcCCCCCCCccccccCCCCCccccCCCcccccccHHHHhccHHHHH
Q 039541          250 CCIIIYPFISESPRWLFIHGHEAEAMAVLKRLASRSNYQSDYGLESCCLSNMPPKAKNVIPKLDLYSSLKDLFNRKWALR  329 (521)
Q Consensus       250 ~~~~~~~~~~esp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~  329 (521)
                      ...+..--..|      .-+++.+.++.+.+..                                 ...+.+..+++   
T Consensus       212 gmAvil~~W~E------Nygdps~~kdlltqf~---------------------------------gaa~aiaSD~k---  249 (454)
T KOG4332|consen  212 GMAVILSSWSE------NYGDPSENKDLLTQFK---------------------------------GAARAIASDEK---  249 (454)
T ss_pred             HHHHHHhhhhh------ccCChhhhHHHHHHhh---------------------------------HhHHHHhcchH---
Confidence            33122211112      1233333333333321                                 13344455543   


Q ss_pred             HHHHHHHHHHHHHHHHHhHHhhccCCC-----ccHHHHHHHHHHHhHhHHHHHHHHHhhcCCc--hHHHHHHHHHHHHHH
Q 039541          330 RLLTIMALAFGIGVVYFGLLLGVGNLS-----FNIYLSLAFNGLLDIPAYLLTFILIERWSRK--SSILTFCILSGTCSA  402 (521)
Q Consensus       330 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~--~~~~~~~~~~~i~~~  402 (521)
                      ..+.+.+....-...|...-+|.+.+.     ...........+..++|+-+..++..|-..|  ..+.+.+.+....+.
T Consensus       250 i~LLG~iqsLFE~smytFVFLWTPaLspn~e~iPhGfiFatFMlASmLGSSla~Rl~s~s~~~ve~ymqivf~vs~a~l~  329 (454)
T KOG4332|consen  250 IALLGAIQSLFEGSMYTFVFLWTPALSPNDEEIPHGFIFATFMLASMLGSSLASRLLSRSSPKVESYMQIVFLVSIAALL  329 (454)
T ss_pred             HHHHHHHHHHHhhhhheeeeeecccCCCCcccCCchhHHHHHHHHHHHhhHHHHHHHhcCCcccchHHHHHHHHHHHHHH
Confidence            223333333333333322222332222     1222333333355566666665555543322  344444444444433


Q ss_pred             HHHhc----CCch-HHHHHHHHHHHHHHHHHHHHHHHHhhccccCchhhhhhhHHHHHhhhhhhhHHHHHHHhhc--cch
Q 039541          403 ICVAI----GDEQ-EVLQIGLELASFFSACVAFNVLLVFGTELFTTCVRNSTTSLVRQAVNLGAAFSPVLISAGR--QNE  475 (521)
Q Consensus       403 ~~~~~----~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~p~~~~~~~--~~~  475 (521)
                      +....    +... +....+..+++-.+.+..+|...-+-.+..|++.|++.+-+...-.++-..++-+..-...  .+.
T Consensus       330 Lpilt~~vsP~kes~~~s~i~F~~~E~cvGlfwPSimkmRsqyIPEearstimNfFRvPLnifvClvLynlh~~~~p~~t  409 (454)
T KOG4332|consen  330 LPILTSSVSPSKESPSESLIGFCLFEACVGLFWPSIMKMRSQYIPEEARSTIMNFFRVPLNIFVCLVLYNLHVDAFPTTT  409 (454)
T ss_pred             HHHHHhccCCCcCCchHHHHHHHHHHHHHhhcchHHHHHHHhhCCHHHHhhhhhheechhhHhhhhhheecccccCcccc
Confidence            33222    1111 1345667777788889999999999999999999887765544333332222222211111  223


Q ss_pred             hHHHHHHHHHHHHHhHh
Q 039541          476 FLSFGVFGLVVFCFGFF  492 (521)
Q Consensus       476 ~~~~~~~~~~~~~~~~~  492 (521)
                      ...|.++.+...++.+.
T Consensus       410 r~mf~icS~~~~~a~i~  426 (454)
T KOG4332|consen  410 RNMFGICSAFLFVASIL  426 (454)
T ss_pred             chhhhhhHHHHHHHHHH
Confidence            35666666666665544

>TIGR00805 oat sodium-independent organic anion transporter

Probab=98.79  E-value=4.8e-08  Score=101.11  Aligned_cols=152  Identities=13%  Similarity=0.068  Sum_probs=112.3

Q ss_pred             HHhhccCCCccHHH---HHHHHHHHhHhHHHHHHHHHhhcCCchHHHHHHHHHHHHHHHHHhcC----------------
Q 039541          348 LLLGVGNLSFNIYL---SLAFNGLLDIPAYLLTFILIERWSRKSSILTFCILSGTCSAICVAIG----------------  408 (521)
Q Consensus       348 ~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~i~~~~~~~~~----------------  408 (521)
                      ++.+.++++.+...   ......++..++.++.+++.||.+||+.+.++.++.+++.+++.+..                
T Consensus        56 l~~iek~F~lss~~~G~i~s~~~i~~~~~~i~v~~~~~r~~r~~~i~~g~ll~~lg~ll~alphf~~~~y~~~~~~~~~~  135 (633)
T TIGR00805        56 LTTIERRFKLSTSSSGLINGSYEIGNLLLIIFVSYFGTKLHRPIVIGIGCAIMGLGSFLLSLPHFLSGRYSYSTTVSSTG  135 (633)
T ss_pred             chhhhhhhCCCCCcceeeeehhhHHHHHHHHHHHHhhcccCcceEEEecHHHHHHHHHHHhChHHhcCCccccccccccc
Confidence            34444555544333   33445577788889999999999999999999999999988876542                


Q ss_pred             ------------C--------------------c-hHHHHHHHHHHHHHHHHHHHHHHHHhhccccCchhhhhhhHHHHH
Q 039541          409 ------------D--------------------E-QEVLQIGLELASFFSACVAFNVLLVFGTELFTTCVRNSTTSLVRQ  455 (521)
Q Consensus       409 ------------~--------------------~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~  455 (521)
                                  .                    . ....+++.-++.|++.+..++...+++.|.+|++.|+...|+.+.
T Consensus       136 ~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~GiG~~~~~~~~~~~i~d~~~~~~~~~~~~i~~~  215 (633)
T TIGR00805       136 NLSSANSFLCMENLTQALRPTQCPSECQKQHKESLMWLLFLVSQLLRGIGATPIFPLGISYIDDFAKSKNSPLYIGILES  215 (633)
T ss_pred             cccccccccccCCCCCCccccccccccccccCCCceehhhHHHHHHHhccCCcchhcCchhhhccCCccccHHHHHHHHH
Confidence                        0                    0 113455678888888888899999999999999999999999999


Q ss_pred             hhhhhhhHHHHHHHhhc-----c-------------------chhHHHHHHHHHHHHHhHhhhccccC
Q 039541          456 AVNLGAAFSPVLISAGR-----Q-------------------NEFLSFGVFGLVVFCFGFFVVFLPET  499 (521)
Q Consensus       456 ~~~~g~~~~p~~~~~~~-----~-------------------~~~~~~~~~~~~~~~~~~~~~~~~~~  499 (521)
                      ...+|..+++.+.++..     .                   .++..|++.+++.++..+.++++|++
T Consensus       216 ~~~iG~~lG~llgg~l~~~~~d~~~~~~~~~~l~~~dprWiGaWwl~Fli~g~l~~l~~v~l~~~p~~  283 (633)
T TIGR00805       216 IAVFGPAFGYLLGSFCLQIYVDTGSVNTEDVILTPTDPRWIGAWWIGFLICGGVALLTSIPFFFFPKA  283 (633)
T ss_pred             HHHhhhHHHHHHHHHHHhcccccccCCCCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHhCccc
Confidence            99999999998876421     0                   13445777777666665555566654

Proteins of the OAT family catalyze the Na+-independent facilitated transport of organic anions such as bromosulfobromophthalein and prostaglandins as well as conjugated and unconjugated bile acids (taurocholate and cholate, respectively). These transporters have been characterized in mammals, but homologues are present in C. elegans and A. thaliana. Some of the mammalian proteins exhibit a high degree of tissue specificity. For example, the rat OAT is found at high levels in liver and kidney and at lower levels in other tissues. These proteins possess 10-12 putative a-helical transmembrane spanners. They may catalyze electrogenic anion uniport or anion exchange.

>COG2223 NarK Nitrate/nitrite transporter [Inorganic ion transport and metabolism]

Probab=98.77  E-value=1.1e-07  Score=89.13  Aligned_cols=146  Identities=14%  Similarity=0.126  Sum_probs=113.1

Q ss_pred             ceeeecceeeCCccccchhhHHHHHHHHHHhhhhhhhccccCCCCchHHHHHHHHHHHHHHHHHhccc-------cHHHH
Q 039541          103 TIISDWSLECAGSSILSGLPSSCFFIGCLLGGLALSTLGDSSSLGRKKLLFLSCFAMSITALATIFAN-------NIWIY  175 (521)
Q Consensus       103 ~i~~~~~~~~~~~~~~~~~~~s~~~lg~~i~~~~~g~l~dr~~~Grr~~l~~~~~~~~~~~~~~~~~~-------~~~~l  175 (521)
                      .++++|+++..+.    |...+.+.+...+..+..|+++||  +|.+|++.......+++..+.++..       +....
T Consensus       244 ~~~~~fg~~~~~A----g~~a~~f~~~g~l~Rp~GG~LsDR--~Gg~rv~~~~f~~~~~~~~~l~~~~~~~~~~~~~~~~  317 (417)
T COG2223         244 YLVTQFGLSPVTA----GLIAFLFPLIGALARPLGGWLSDR--IGGRRVTLAVFVGMALAAALLSLFLTGFGHGGSFVVF  317 (417)
T ss_pred             HHHHhcCCChhhH----HHHHHHHHHHHHHHHhccchhhhh--ccchhHHHHHHHHHHHHHHHHHccccccccCcchHHH
Confidence            4568899999777    999999999999999999999999  9999999999998888888877763       44444


Q ss_pred             HHHHHHhhccchhhHhhhhhheeeeecCcchhHHHHHHHHHHHHHHHHHHHH-HHhhcCCc-hhHHHHHHHHHHHHHHhh
Q 039541          176 STIRFVAGFFRAPIMTSVIVLLSEMVSKRWRGQVVIIGFTFFSFGLVSLPAV-AYLSRGSS-WKMLYVWTSIPSIVCCII  253 (521)
Q Consensus       176 ~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~rg~~~~~~~~~~~~G~~i~~~i-~~~~~~~~-wr~~f~~~~~~~~~~~~~  253 (521)
                      ++.-+..++..|.-....+.++..++| ++-|.+.|+..+..++|...-|.. +...+..| ++..|++.....+++.++
T Consensus       318 ~~~~l~l~~~~G~GnGsvfk~Ip~if~-~~~G~v~G~vga~G~lGGf~lp~~~g~~~~~tg~~~~~f~~~~~~~~~a~v~  396 (417)
T COG2223         318 VAVFLALFVFAGLGNGSVFKMIPVIFP-KETGAVTGIVGAIGGLGGFFLPLAFGVSLDLTGSYTGAFMLLLAFYLVALVL  396 (417)
T ss_pred             HHHHHHHHHHhccCcchheeechHHHH-hhhhHHHHHHHHhccccccchhHHHHHHHHhcccHHHHHHHHHHHHHHHHHH
Confidence            443344444444444455666777776 488999999999999998777766 77666555 999999988888888744


Q ss_pred             hc
Q 039541          254 IY  255 (521)
Q Consensus       254 ~~  255 (521)
                      .+
T Consensus       397 ~~  398 (417)
T COG2223         397 TW  398 (417)
T ss_pred             HH
Confidence            44

>PRK10429 melibiose:sodium symporter; Provisional

Probab=98.76  E-value=6.4e-07  Score=90.28  Aligned_cols=111  Identities=11%  Similarity=0.011  Sum_probs=90.1

Q ss_pred             hhhHHHHHHHHHHhhhhhhhccccCCCCchHHHHHHHHHHHHHHHHHhc-----cccHHHHHHHHHHhhccchhhHhhhh
Q 039541          120 GLPSSCFFIGCLLGGLALSTLGDSSSLGRKKLLFLSCFAMSITALATIF-----ANNIWIYSTIRFVAGFFRAPIMTSVI  194 (521)
Q Consensus       120 ~~~~s~~~lg~~i~~~~~g~l~dr~~~Grr~~l~~~~~~~~~~~~~~~~-----~~~~~~l~~~r~l~G~~~g~~~~~~~  194 (521)
                      +++.+...++..++.+++++++||  +|+|+.+.++.++.+++.+...+     .++.+.+++.-++.|++.+...+...
T Consensus       269 ~~~~~~~~i~~ii~~~~~~~l~~r--~gkk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~g~~~~~~~~~~~  346 (473)
T PRK10429        269 PYYLSYAGAANLVTLILFPRLVKS--LSRRILWAGASIFPVLSCGVLLLMGLAAPHNALLIVIAGILLNIGTALFWVLQV  346 (473)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH--cCcHHHHHHHHHHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHHHHHHHHHH
Confidence            677777778899999999999999  99999999888877766655432     35677777888899999999999999


Q ss_pred             hheeeeec-------CcchhHHHHHHHHHHHHHHHHHHHH-HHhhc
Q 039541          195 VLLSEMVS-------KRWRGQVVIIGFTFFSFGLVSLPAV-AYLSR  232 (521)
Q Consensus       195 ~~i~~~~~-------~~~rg~~~~~~~~~~~~G~~i~~~i-~~~~~  232 (521)
                      ++++|..+       +++.|..++......-+|..+++.+ |.+++
T Consensus       347 am~ad~id~~e~~tG~R~~G~~~s~~~~~~K~~~al~~~i~g~~l~  392 (473)
T PRK10429        347 IMVADTVDYGEYKLGIRCESIAYSVQTMVVKGGSAFAAFFIGVVLG  392 (473)
T ss_pred             HHHhhhhhhhhHhcCccchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999966       3344668899999999999998877 66554

>TIGR00896 CynX cyanate transporter

Probab=98.75  E-value=2.8e-08  Score=96.30  Aligned_cols=127  Identities=10%  Similarity=0.075  Sum_probs=98.8

Q ss_pred             cceeeecceeeCCccccchhhHHHHHHHHHHhhhhhhhccccCCC-CchHHHHHHHHHHHHHHHHHhccccHHHHHHHHH
Q 039541          102 TTIISDWSLECAGSSILSGLPSSCFFIGCLLGGLALSTLGDSSSL-GRKKLLFLSCFAMSITALATIFANNIWIYSTIRF  180 (521)
Q Consensus       102 ~~i~~~~~~~~~~~~~~~~~~~s~~~lg~~i~~~~~g~l~dr~~~-Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~  180 (521)
                      |.+.++.|.+..+.    +.+.+...++..++.++.|++.||  + +||+.+..+.++.+++.++..+.++..... .-+
T Consensus       221 p~~~~~~g~~~~~~----g~~~~~~~~~~i~~~~~~g~l~dr--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~  293 (355)
T TIGR00896       221 PAILISHGASAATA----GSLLALMQLAQAASALLIPALARR--VKDQRGIVAVLAVLQLVGLCGLLFAPMHGLWA-WAL  293 (355)
T ss_pred             HHHHHHcCCCHHHH----HHHHHHHHHHHHHHHHhHHHHHhh--hccchHHHHHHHHHHHHHHHHHHHhhhhHHHH-HHH
Confidence            44445678887665    999999999999999999999999  9 567777788888888877777765543332 457


Q ss_pred             HhhccchhhHhhhhhheeeee-cCcchhHHHHHHHHHHHHHHHHHHHH-HHhhcCCc
Q 039541          181 VAGFFRAPIMTSVIVLLSEMV-SKRWRGQVVIIGFTFFSFGLVSLPAV-AYLSRGSS  235 (521)
Q Consensus       181 l~G~~~g~~~~~~~~~i~~~~-~~~~rg~~~~~~~~~~~~G~~i~~~i-~~~~~~~~  235 (521)
                      +.|++.|...+...+.+.+.. ++++++...++.+....+|..++|.+ |.+.++.|
T Consensus       294 l~g~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~gp~~~G~l~~~~g  350 (355)
T TIGR00896       294 VLGLGQGGAFPLALTLIGLRSRQAAQAAALSAMAQSIGYLLAALGPLFVGVLHDISG  350 (355)
T ss_pred             HHHHhhhhHhHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            789999998888777766555 45677999999888888888899887 77766543

This family of proteins is involved in active transport of cyanate. The cyanate transporter in E.Coli is used to transport cyanate into the cell so it can be metabolized into ammonia and bicarbonate. This process is used to overcome the toxicity of environmental cyanate.

>KOG4686 consensus Predicted sugar transporter [Carbohydrate transport and metabolism]

Probab=98.73  E-value=4.8e-08  Score=85.87  Aligned_cols=141  Identities=11%  Similarity=0.129  Sum_probs=106.7

Q ss_pred             ceeeecceeeCCccccchhhHHHHHHHHHHhhhhhhhccccCCCCchHHHHHHHHHHHH-HHHHHhccccHHHHHHHHHH
Q 039541          103 TIISDWSLECAGSSILSGLPSSCFFIGCLLGGLALSTLGDSSSLGRKKLLFLSCFAMSI-TALATIFANNIWIYSTIRFV  181 (521)
Q Consensus       103 ~i~~~~~~~~~~~~~~~~~~~s~~~lg~~i~~~~~g~l~dr~~~Grr~~l~~~~~~~~~-~~~~~~~~~~~~~l~~~r~l  181 (521)
                      ..++.||+|..++    +.+.+..+.-.++.+++.|.++||  +|++-..+.+..+..+ +-....|  +++.=..+..+
T Consensus       290 fF~~rfGlS~~~a----~~i~s~vy~Isav~spvfg~i~Dk--~G~n~~wv~~a~~~tl~~H~~l~F--t~lsPy~~m~~  361 (459)
T KOG4686|consen  290 FFQKRFGLSAVSA----GNILSTVYGISAVLSPVFGAISDK--YGFNLWWVASACILTLLGHSGLFF--TFLSPYTSMTF  361 (459)
T ss_pred             HHHHhhCCChhhc----cchhhhhhhhhhhhhhhHHHhHhh--hcceehhHHHHHHHHHHHhhhHHh--hhccHHHHHHH
Confidence            5678999999887    999999999999999999999999  9999888775554443 3333333  33344567788


Q ss_pred             hhccchhhHhhhhhheeeeecCcchhHHHHHHHHHHHHHHHHHHHH-HHhhcCC---chhHHHH-HHHHHHHHHH
Q 039541          182 AGFFRAPIMTSVIVLLSEMVSKRWRGQVVIIGFTFFSFGLVSLPAV-AYLSRGS---SWKMLYV-WTSIPSIVCC  251 (521)
Q Consensus       182 ~G~~~g~~~~~~~~~i~~~~~~~~rg~~~~~~~~~~~~G~~i~~~i-~~~~~~~---~wr~~f~-~~~~~~~~~~  251 (521)
                      .|+..+.........++...|+++.|++.|..+...++|..+.|++ |.+.++.   .|--.|. +.+.+++...
T Consensus       362 lGLsysllAcslWP~va~~vpE~qLGTaygf~qsIqNLgla~i~Iiag~i~d~~g~y~~le~ffl~~~~~aL~sv  436 (459)
T KOG4686|consen  362 LGLSYSLLACSLWPCVASLVPEEQLGTAYGFIQSIQNLGLAFIPIIAGFIADGDGSYDNLEAFFLIIGLMALTSV  436 (459)
T ss_pred             HhhhHHHHHHHHhhhhhhhCCHHHhcchHHHHHHHHhhhhhHHhhhhheeecCCCchhhHHHHHHHHHHHHHHHH
Confidence            8988887777778888889999999999999999999999999999 5565533   3444444 3444444444

>PF06609 TRI12: Fungal trichothecene efflux pump (TRI12); InterPro: IPR010573 This family consists of several fungal specific trichothecene efflux pump proteins

Probab=98.73  E-value=5.4e-07  Score=90.47  Aligned_cols=142  Identities=12%  Similarity=-0.026  Sum_probs=102.8

Q ss_pred             HHhhccCCCccH--HHHHHHHHHHhHhHHHHHHHHHhhcCCchHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHH
Q 039541          348 LLLGVGNLSFNI--YLSLAFNGLLDIPAYLLTFILIERWSRKSSILTFCILSGTCSAICVAIGDEQEVLQIGLELASFFS  425 (521)
Q Consensus       348 ~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~  425 (521)
                      +++...+.|.+.  .+......+...++.++.|.++|.+|||..++.+.++..++.++.....+.  ..++....+.|++
T Consensus        67 l~~I~~diG~~~~~~w~~~~~~l~~av~~~~~G~LSDlfGRr~~~i~g~~l~vvG~Iv~atA~~~--~~~iag~~l~Gvg  144 (599)
T PF06609_consen   67 LPYINADIGGSDNWSWFSTAWTLASAVSFPFVGRLSDLFGRRYFFIIGSLLGVVGSIVCATAQNM--NTFIAGMVLYGVG  144 (599)
T ss_pred             HHHHHHhcCCCccchHHHHHHHHHHHHHHHhhHHHHHHhcchHHHHHHHHHHHhHHHHhhcCCcH--HHHHHHHHHHHHh
Confidence            355556666432  333445557777888999999999999999999999999999988877666  4567788888888


Q ss_pred             HHHHHHHHHHhhccccCchhhhhhhHHHHHhhhhhhhHHHHHHHh--hccchhHHHHHHHHHHHHHhHh
Q 039541          426 ACVAFNVLLVFGTELFTTCVRNSTTSLVRQAVNLGAAFSPVLISA--GRQNEFLSFGVFGLVVFCFGFF  492 (521)
Q Consensus       426 ~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~p~~~~~--~~~~~~~~~~~~~~~~~~~~~~  492 (521)
                      .+... .....++|..|.+.|..+.++...........+|.+...  ...++.+.|.+.++...++.+.
T Consensus       145 aG~~~-~~~~~isEl~p~k~R~~~~~~~~~~~i~~~~~~~~ia~~~~~~~~WRw~~~~~~i~~~i~~vl  212 (599)
T PF06609_consen  145 AGVQE-LAALAISELVPNKWRGLGLAIASIPFIITTWISPLIAQLFAAHSGWRWIFYIFIIWSGIALVL  212 (599)
T ss_pred             hHHHH-HHHHHHHHhcccchhhhHhHHHHHHHHhhhcccHHHHHHhccCCCcchHHHHHHHHHHHHHHH
Confidence            65554 455668999999999988877765554555566776643  2346777777777766665544

Many of the genes involved in trichothecene toxin biosynthesis in Fusarium sporotrichioides are present within a gene cluster. It has been suggested that TRI12 may play a role in F. sporotrichioides self-protection against trichothecenes [].

>COG0477 ProP Permeases of the major facilitator superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / Inorganic ion transport and metabolism / General function prediction only]

Probab=98.72  E-value=1.2e-07  Score=89.86  Aligned_cols=129  Identities=26%  Similarity=0.386  Sum_probs=108.4

Q ss_pred             hhhHHHHHHHHHHhhhhhhhccccCCCCchHHHHHHHHHHHHHHHHHhcccc--HHHHHHHHHHhhccchhhHhhhhhhe
Q 039541          120 GLPSSCFFIGCLLGGLALSTLGDSSSLGRKKLLFLSCFAMSITALATIFANN--IWIYSTIRFVAGFFRAPIMTSVIVLL  197 (521)
Q Consensus       120 ~~~~s~~~lg~~i~~~~~g~l~dr~~~Grr~~l~~~~~~~~~~~~~~~~~~~--~~~l~~~r~l~G~~~g~~~~~~~~~i  197 (521)
                      ++..+.+.++..+++++.|.++||  +|||+.+..+.....++.++.++..+  .+.+++.|+++|++.+...+...+++
T Consensus        42 ~~~~~~~~~~~~~~~~~~g~l~d~--~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~  119 (338)
T COG0477          42 GLLLSAFFLGYAIGSLLAGPLGDR--YGRRKVLIIGLLLFLLGTLLLALAPNVGLALLLILRLLQGLGGGGLLPVASALL  119 (338)
T ss_pred             HHHHHHHHHHHHHHhhhhhhcccc--ccchHHHHHHHHHHHHHHHHHHhCccchHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence            999999999999999999999999  99999988888776777777777776  99999999999999999999999999


Q ss_pred             eeeecC-cchhHHHHHHHH-HHHHHHHHHHHHHHhh---cCCchhHHHHHHHHHHHHH
Q 039541          198 SEMVSK-RWRGQVVIIGFT-FFSFGLVSLPAVAYLS---RGSSWKMLYVWTSIPSIVC  250 (521)
Q Consensus       198 ~~~~~~-~~rg~~~~~~~~-~~~~G~~i~~~i~~~~---~~~~wr~~f~~~~~~~~~~  250 (521)
                      .|+.|+ ++|+...+.... ...+|.++++.++...   ...+||..|.+........
T Consensus       120 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  177 (338)
T COG0477         120 SEWFPEATERGLAVGLVTLGAGALGLALGPLLAGLLLGALLWGWRAAFLLAALLGLLL  177 (338)
T ss_pred             HHhcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHH
Confidence            999997 688999998888 5778888888664332   2358999777666555443

>COG3104 PTR2 Dipeptide/tripeptide permease [Amino acid transport and metabolism]

Probab=98.67  E-value=1.2e-07  Score=91.02  Aligned_cols=144  Identities=12%  Similarity=0.036  Sum_probs=109.4

Q ss_pred             CCccHHHHHHHHH---HHhHhHHHHHHHHHhh-cCCchHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHH
Q 039541          355 LSFNIYLSLAFNG---LLDIPAYLLTFILIER-WSRKSSILTFCILSGTCSAICVAIGDEQEVLQIGLELASFFSACVAF  430 (521)
Q Consensus       355 ~~~~~~~~~~~~~---~~~~~~~~~~g~l~dr-~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  430 (521)
                      +|.+...+..+.+   ..--+..+++||++|| +|+|+.+..+.++..++.+++..........+++.+.+..++.|+.=
T Consensus        56 Lg~~~~~A~~l~~~y~slVY~t~i~GG~laDr~LG~~~tI~lGail~~iGh~~L~~~~~~~~~gl~i~L~~I~iG~Gl~K  135 (498)
T COG3104          56 LGFDETHATGLFSAYGSLVYLTPIIGGWLADRVLGTRRTIVLGAILMAIGHLVLAISSVSGPGGLYIGLALIIVGTGLFK  135 (498)
T ss_pred             CCcChHhhHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHhccccccccHHHHHHHHHHhcccccc
Confidence            4455444433332   2223577899999999 59999999999999999999887641222466777777778888888


Q ss_pred             HHHHHhhccccCchh--hhhhhHHHHHhhhhhhhHHHHHHHh--hccchhHHHHHHHHHHHHHhHhhhcccc
Q 039541          431 NVLLVFGTELFTTCV--RNSTTSLVRQAVNLGAAFSPVLISA--GRQNEFLSFGVFGLVVFCFGFFVVFLPE  498 (521)
Q Consensus       431 ~~~~~~~~~~~~~~~--r~~~~~~~~~~~~~g~~~~p~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~  498 (521)
                      +....+..|.+|++.  |-.+.++.++..++|++++|++.++  ...++...|...++...++.+.+...++
T Consensus       136 ~NiS~llg~ly~~~DprrD~gFt~fY~~iNiGsl~~p~i~~~~~~~~g~~~gF~~aavGm~~gl~~f~~~~r  207 (498)
T COG3104         136 PNISSLLGELYPKDDPRRDGGFTLFYMGINIGSLIAPIITGLLAINYGWHVGFGLAAVGMIIGLVIFLLGRR  207 (498)
T ss_pred             ccHHHHHHHhcCCCCcccCCCccEEEEEeehHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHccc
Confidence            899999999997653  6677778888889999999999987  3456788888888888888777766653

>KOG0637 consensus Sucrose transporter and related proteins [Carbohydrate transport and metabolism]

Probab=98.67  E-value=6.7e-07  Score=84.51  Aligned_cols=125  Identities=14%  Similarity=0.136  Sum_probs=95.0

Q ss_pred             CcceeeecceeeCCccccchhhHHHHHHHHHHhhhhhhhcccc--CCCCchHHHHH-HHHHHHHHHHHHhccccHH----
Q 039541          101 DTTIISDWSLECAGSSILSGLPSSCFFIGCLLGGLALSTLGDS--SSLGRKKLLFL-SCFAMSITALATIFANNIW----  173 (521)
Q Consensus       101 ~~~i~~~~~~~~~~~~~~~~~~~s~~~lg~~i~~~~~g~l~dr--~~~Grr~~l~~-~~~~~~~~~~~~~~~~~~~----  173 (521)
                      .+++..++|++..-    .+.+--...+...+.+|+.|..+||  .||||||.++. +.+...++.++..++.++.    
T Consensus        55 ~tPyl~~lGvphk~----~S~iw~~gPi~G~~vQP~vG~~SDrc~sr~GRRRPfI~~~s~~i~~~l~Lig~aaDig~~lg  130 (498)
T KOG0637|consen   55 LTPYLQSLGVPHKW----SSIIWLCGPLSGLLVQPLVGSASDRCTSRYGRRRPFILAGSLLIAVSLFLIGYAADIGLLLG  130 (498)
T ss_pred             ccHHHHHcCCCccc----ccccccccccccceecccccccccccccccccccchHHHhhHHHHHHHhhhhhHhhhhHHhc
Confidence            46677788888733    3777777888888999999999998  27999877654 6666777777888775432    


Q ss_pred             -------------HHHHHHHHhhccchhhHhhhhhheeeeecCcchhH-HHHHHHHHHHHHHHHHHHHHH
Q 039541          174 -------------IYSTIRFVAGFFRAPIMTSVIVLLSEMVSKRWRGQ-VVIIGFTFFSFGLVSLPAVAY  229 (521)
Q Consensus       174 -------------~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~rg~-~~~~~~~~~~~G~~i~~~i~~  229 (521)
                                   .++++--+.=++........-+++.|...++++.+ +++++....++|..+|..+|.
T Consensus       131 d~~~~~~~~rai~~~~lg~~LLD~A~n~~qgp~ra~L~Dl~~~d~~~~~Ans~f~~f~avGnvLGY~~g~  200 (498)
T KOG0637|consen  131 DNERKPVKPRAIVLFILGFWLLDVANNTLQGPCRALLADLARGDAKKTRANSVFSFFMAVGNVLGYALGS  200 (498)
T ss_pred             CCcccccchHHHHHHHHHhHHHHhhhhhhhhhHHHHHHHhccChhhhhccchhHHHHHHhcceeeeeccc
Confidence                         34444445555666777888899999997766666 999999999999999888864

>PRK09669 putative symporter YagG; Provisional

Probab=98.67  E-value=6.6e-07  Score=89.53  Aligned_cols=114  Identities=19%  Similarity=0.245  Sum_probs=89.3

Q ss_pred             hhhHHHHHHHHHHhhhhhhhccccCCCCchHHHHHHHHHHHHHHHHHhc--cccHHHHHHHHHHhhccchhhHhhhhhhe
Q 039541          120 GLPSSCFFIGCLLGGLALSTLGDSSSLGRKKLLFLSCFAMSITALATIF--ANNIWIYSTIRFVAGFFRAPIMTSVIVLL  197 (521)
Q Consensus       120 ~~~~s~~~lg~~i~~~~~g~l~dr~~~Grr~~l~~~~~~~~~~~~~~~~--~~~~~~l~~~r~l~G~~~g~~~~~~~~~i  197 (521)
                      +.+.....++..++.+++++++||  +|+|+.+..+.++.+++.+...+  .++.+.+++..++.|++.+...+...+++
T Consensus       267 ~~~~~~~~i~~ii~~~~~~~l~~r--~gk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~~~~~~am~  344 (444)
T PRK09669        267 TLFLVTGMIAGLFGALLSERLLGK--FDRVRAFKWTIVAFVILSALIFFIPPSNVWLIFALNILFNFIQNLTTPLQWSMF  344 (444)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH--hChHHHHHHHHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            556666778888999999999999  99999999888766654443322  35777888888999999999999999999


Q ss_pred             eeeecC-------cchhHHHHHHHHHHHHHHHHHHHH-HHhhcCCc
Q 039541          198 SEMVSK-------RWRGQVVIIGFTFFSFGLVSLPAV-AYLSRGSS  235 (521)
Q Consensus       198 ~~~~~~-------~~rg~~~~~~~~~~~~G~~i~~~i-~~~~~~~~  235 (521)
                      +|..+.       ++.|...+.......+|..+|+.+ |.+++..|
T Consensus       345 ad~~d~~e~~~G~r~~g~~~s~~~~~~klg~alg~~i~g~ll~~~G  390 (444)
T PRK09669        345 SDVVDYEEKRSGRRLDGLVFSTNLFAIKLGLAIGGAVVGWILAWVD  390 (444)
T ss_pred             HhhhhhhhhhcCcCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence            998852       334677888888889999999887 55554333

>TIGR00926 2A1704 Peptide:H+ symporter (also transports b-lactam antibiotics, the antitumor agent, bestatin, and various protease inhibitors)

Probab=98.66  E-value=1.8e-06  Score=88.82  Aligned_cols=146  Identities=13%  Similarity=0.103  Sum_probs=115.7

Q ss_pred             eeeecceeeCCccccchhhHHHHHHHHHHhhhhhhhccccCCCCchHHHHHHHHHHHHHHHHHhcccc--------HHHH
Q 039541          104 IISDWSLECAGSSILSGLPSSCFFIGCLLGGLALSTLGDSSSLGRKKLLFLSCFAMSITALATIFANN--------IWIY  175 (521)
Q Consensus       104 i~~~~~~~~~~~~~~~~~~~s~~~lg~~i~~~~~g~l~dr~~~Grr~~l~~~~~~~~~~~~~~~~~~~--------~~~l  175 (521)
                      +.+.+|.+.++.    ..+...+....-+..++.|.++|+ ++||++.++++.++..+|.++.+++..        ....
T Consensus        14 l~~~lg~~~~~A----~~i~~~f~~l~yl~pilGg~iAD~-~lG~~~tIl~~~ii~~lG~~llai~a~~~~~~~~~~~~~   88 (654)
T TIGR00926        14 FLNFLGFSESTS----TVLFHTFTYLCYLTPLIGAIIADG-WLGKFKTILYLSIVYVVGHALLSFGAIPSSGHPLHDLLD   88 (654)
T ss_pred             HHHHcCCcHHHH----HHHHHHHHHHHHHHHHHHHHHHHH-HhhhHHHHHHHHHHHHHHHHHHHhccCcccccchHHHHH
Confidence            345677777555    667777777777888899999998 789999999999999999988876521        2346


Q ss_pred             HHHHHHhhccchhhHhhhhhheeeeecCc---chhHHHHHHHHHHHHHHHHHHHH-HHhhc-------CCchhHHHHHHH
Q 039541          176 STIRFVAGFFRAPIMTSVIVLLSEMVSKR---WRGQVVIIGFTFFSFGLVSLPAV-AYLSR-------GSSWKMLYVWTS  244 (521)
Q Consensus       176 ~~~r~l~G~~~g~~~~~~~~~i~~~~~~~---~rg~~~~~~~~~~~~G~~i~~~i-~~~~~-------~~~wr~~f~~~~  244 (521)
                      +++-.+.++|.|+.-+...+...|-++++   +|-..+.++..+.++|.++++.+ .++-.       ..+|...|.+.+
T Consensus        89 l~gLaLia~G~GgiKp~vsaf~gdqf~~~~~~~~~s~F~~fY~~iNiGSlis~~i~~~l~~~~~~fg~~~~~~~aF~i~~  168 (654)
T TIGR00926        89 LLGLALIALGTGGIKPCVSAFGGDQFEERQLSLRSRFFSFFYFAINAGSLISTIITPILRGDVGCFGCQDCYPLAFGVPA  168 (654)
T ss_pred             HHHHHHHHhhccccccCchhhhHhhcCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCcchHHHHHHHH
Confidence            67888899999999999999999988754   36778888889999999988777 55542       236999999998


Q ss_pred             HHHHHHHhhh
Q 039541          245 IPSIVCCIII  254 (521)
Q Consensus       245 ~~~~~~~~~~  254 (521)
                      +..++.+++.
T Consensus       169 i~m~ia~lvf  178 (654)
T TIGR00926       169 ILMILALIVF  178 (654)
T ss_pred             HHHHHHHHHH
Confidence            8888777443

>KOG2532 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]

Probab=98.66  E-value=3.6e-07  Score=90.23  Aligned_cols=134  Identities=11%  Similarity=0.042  Sum_probs=115.1

Q ss_pred             HHHHHHHhHhHHHHHHHHHhhcCCchHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHhhccccC
Q 039541          363 LAFNGLLDIPAYLLTFILIERWSRKSSILTFCILSGTCSAICVAIGDEQEVLQIGLELASFFSACVAFNVLLVFGTELFT  442 (521)
Q Consensus       363 ~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  442 (521)
                      ......+.+++.+.++++.||+|.|+++..+.++.+++.++..+....+.+.+++.-++.|++.+..+|....+..+-.|
T Consensus        79 ~ss~~~G~i~~~iP~g~l~~k~G~r~v~~~~~~~sa~~t~l~P~aa~~~~~~~~~~R~lqGl~~g~~~pa~~~i~~~W~P  158 (466)
T KOG2532|consen   79 FSSFFWGYILGQIPGGYLADKFGARRVFFISGLISALLTLLTPLAASIGFYLLLVLRFLQGLGQGVLFPAIGSILAKWAP  158 (466)
T ss_pred             HHHHHHHHHHHHcCcHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHhcchhhHHHHHHhHHHHhHHHhhhhceeeeECC
Confidence            34455788889999999999999999999999999999988888766655566788899999999999999999999999


Q ss_pred             chhhhhhhHHHHHhhhhhhhHHHHHHHh--h-ccchhHHHHHHHHHHHHHhHhhhcc
Q 039541          443 TCVRNSTTSLVRQAVNLGAAFSPVLISA--G-RQNEFLSFGVFGLVVFCFGFFVVFL  496 (521)
Q Consensus       443 ~~~r~~~~~~~~~~~~~g~~~~p~~~~~--~-~~~~~~~~~~~~~~~~~~~~~~~~~  496 (521)
                      +++|++..++......+|.+++-.+.|+  . ..|+...|.+.+++.++-.++++++
T Consensus       159 ~~Ers~~~ail~~g~q~g~v~~mp~sg~lc~s~~GW~sifY~~g~~g~i~~~~w~~~  215 (466)
T KOG2532|consen  159 PNERSTFIAILTAGSQLGTIITMPVSGLLCESSLGWPSIFYVFGIVGLIWFILWFLF  215 (466)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhHHHHhccCCCCchHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999988777775  2 3678899999999888877776554

>PF13347 MFS_2: MFS/sugar transport protein

Probab=98.65  E-value=2.1e-07  Score=92.67  Aligned_cols=111  Identities=17%  Similarity=0.311  Sum_probs=99.7

Q ss_pred             hhhHHHHHHHHHHhhhhhhhccccCCCCchHHHHHHHHHHHHHHHHHhccc--cHHHHHHHHHHhhccchhhHhhhhhhe
Q 039541          120 GLPSSCFFIGCLLGGLALSTLGDSSSLGRKKLLFLSCFAMSITALATIFAN--NIWIYSTIRFVAGFFRAPIMTSVIVLL  197 (521)
Q Consensus       120 ~~~~s~~~lg~~i~~~~~g~l~dr~~~Grr~~l~~~~~~~~~~~~~~~~~~--~~~~l~~~r~l~G~~~g~~~~~~~~~i  197 (521)
                      +.+..+..++..++.+++++++||  +|+|+.+..+.++.+++.++..+.+  |.+.+++.-++.|++.+...+...+++
T Consensus       263 ~~~~~~~~~~~~v~~~~~~~l~~r--~gk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~gi~~~~~~~~~~a~~  340 (428)
T PF13347_consen  263 SIFMLIFFVASIVGSPLWGRLSKR--FGKKKVYIIGLLLAALGFLLLFFLGPGSPWLVLILFILAGIGYGAFFVIPWAML  340 (428)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH--ccceeehhhhHHHHHHHHHHHHHHHhhhHHHHHHHHHHhHhhhccccccccccc
Confidence            788889999999999999999999  9999999999999999999988886  999999999999999999999999999


Q ss_pred             eeeecC-------cchhHHHHHHHHHHHHHHHHHHHH-HHhhc
Q 039541          198 SEMVSK-------RWRGQVVIIGFTFFSFGLVSLPAV-AYLSR  232 (521)
Q Consensus       198 ~~~~~~-------~~rg~~~~~~~~~~~~G~~i~~~i-~~~~~  232 (521)
                      +|..+.       ++.|...+..+....+|..+++.+ +.++.
T Consensus       341 ad~id~~e~~tg~r~~g~~~s~~~~~~k~~~~la~~i~g~~l~  383 (428)
T PF13347_consen  341 ADVIDYDEWKTGRRREGMYFSVNSFFIKIGQGLAGAIVGLLLA  383 (428)
T ss_pred             ccchhhHHHhcCCCchHHHHHhhhhhhHHHHHHHHHHHHHHHH
Confidence            999873       345889999999999999888876 55543

>KOG0252 consensus Inorganic phosphate transporter [Inorganic ion transport and metabolism]

Probab=98.61  E-value=2.4e-07  Score=87.36  Aligned_cols=155  Identities=15%  Similarity=0.145  Sum_probs=114.7

Q ss_pred             CcceeeecceeeCCcccc-----chhhHHHHHH-HHHHhhhhhhhccccCCCCchHHHHHHHHHHHHHHHHHhcccc---
Q 039541          101 DTTIISDWSLECAGSSIL-----SGLPSSCFFI-GCLLGGLALSTLGDSSSLGRKKLLFLSCFAMSITALATIFANN---  171 (521)
Q Consensus       101 ~~~i~~~~~~~~~~~~~~-----~~~~~s~~~l-g~~i~~~~~g~l~dr~~~Grr~~l~~~~~~~~~~~~~~~~~~~---  171 (521)
                      ...|.+..++.+++. ..     ++....+... +...|-.+...+.|+  .|||++.+.+.+++++..+..+...|   
T Consensus       327 ~s~I~~~ig~~~~~~-~~~~~~~vA~~~~iia~~~~vPGyw~tv~~id~--iGRk~iq~~GF~~~~i~~~~~~~~y~~~~  403 (538)
T KOG0252|consen  327 QSVIFSAIGVIPSAN-TYHELFKVAEGNLIIAVCSTVPGYWFTVYFIDI--IGRKYIQLMGFFIMTIFFFVIAGPYNQLE  403 (538)
T ss_pred             HHHHHHhhccCCCcc-hHHHHHHHHHHHHHHHHHccCCceeEEEEEeeh--hhhHHHHHhhHHHHHHHHHHHcCCccccc
Confidence            455666666666554 22     1222222222 233367788889999  99999999999999999999998877   


Q ss_pred             -----HHHHHHHHHHhhccchhhHhhhhhheeeeecCcchhHHHHHHHHHHHHHHHHHHHH-HHhhc-----CCchhHHH
Q 039541          172 -----IWIYSTIRFVAGFFRAPIMTSVIVLLSEMVSKRWRGQVVIIGFTFFSFGLVSLPAV-AYLSR-----GSSWKMLY  240 (521)
Q Consensus       172 -----~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~rg~~~~~~~~~~~~G~~i~~~i-~~~~~-----~~~wr~~f  240 (521)
                           .....+..++.-+|-+   .....+-+|.+|.+-|+..-|+..+..-+|.++|... .++.+     ..+-|..+
T Consensus       404 ~~~Gf~v~y~l~~ff~NFGPn---~ttfivpaE~FParvR~t~hGIsAA~GK~GAivg~~~F~~~t~~~yp~~~g~~~v~  480 (538)
T KOG0252|consen  404 NTIGFVVLYSLTFFFGNFGPN---ATTFIVPAEIFPARVRSTCHGISAASGKAGAIVGAFGFLYLTDHNYPPNIGVRNVF  480 (538)
T ss_pred             ccCceeehHHHHHHHHhcCCC---ceeEEeehhhchHHHhhhhhhHHHHhccchHHHHHHHhhHhhhccCCccccchHHH
Confidence                 1233344455555533   3445566799999999999999999999999998776 77777     67899999


Q ss_pred             HHHHHHHHHHHhhhceeeecch
Q 039541          241 VWTSIPSIVCCIIIYPFISESP  262 (521)
Q Consensus       241 ~~~~~~~~~~~~~~~~~~~esp  262 (521)
                      ++.+...++.. +..+++|||.
T Consensus       481 ~i~~~~~~~gi-~~T~l~pEtk  501 (538)
T KOG0252|consen  481 IILAGCMLLGI-LFTLLIPETK  501 (538)
T ss_pred             HHHHHHHHHhH-heeEEeeccc
Confidence            99999999888 7778889984

>KOG0254 consensus Predicted transporter (major facilitator superfamily) [General function prediction only]

Probab=98.61  E-value=5.2e-07  Score=91.88  Aligned_cols=137  Identities=19%  Similarity=0.140  Sum_probs=112.5

Q ss_pred             HHHHHHHHHHhHhHHHHHHHHHhhcCCchHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 039541          360 YLSLAFNGLLDIPAYLLTFILIERWSRKSSILTFCILSGTCSAICVAIGDEQEVLQIGLELASFFSACVAFNVLLVFGTE  439 (521)
Q Consensus       360 ~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  439 (521)
                      ........++..++.++.|+++|++|||+.+.++.++..++.++..+..+.  ..+.+.-++.|++.++...+...+.+|
T Consensus        92 s~~~s~~~lga~~g~l~~g~l~d~~GRk~~l~~~~~~~~iG~ii~~~a~~~--~~l~~GR~l~G~g~G~~~~~~piy~sE  169 (513)
T KOG0254|consen   92 GLLTSILNLGALVGSLLAGRLGDRIGRKKTLLLAVVLFLIGAIIIALAPSW--YQLIVGRILTGLGVGGASVLAPVYISE  169 (513)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhH--HHHHHHHHHhccchhhhhhcchhhHhh
Confidence            355566778889999999999999999999999999999999999988755  678889999999999999999999999


Q ss_pred             ccCchhhhhhhHHHHHhhhhhhhHHHHHHHhhc----cchhHHHHHHHHHHHHHhHhhhccccC
Q 039541          440 LFTTCVRNSTTSLVRQAVNLGAAFSPVLISAGR----QNEFLSFGVFGLVVFCFGFFVVFLPET  499 (521)
Q Consensus       440 ~~~~~~r~~~~~~~~~~~~~g~~~~p~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~  499 (521)
                      ..|++.||...+.......+|..++ ++.+...    .++...+.+..+.+++..+..+++||+
T Consensus       170 iap~~~RG~l~~~~~l~~~~Gi~~~-~~~~~~~~~~~~~Wr~~~~~~~i~~~~~~~~~~~~pes  232 (513)
T KOG0254|consen  170 IAPAHIRGTLVSLYQLFITIGILLG-YCINYGTSKVYAGWRIPLGLALIPAVILALGMLFLPES  232 (513)
T ss_pred             cCChhhhHHHHHHHHHHHHHHHHHH-HHHhhhhccCCccHHHHHHHHHHHHHHHHHHHHhCCCC
Confidence            9999999999999998888887777 4444322    246666666666666655556667754

>TIGR00939 2a57 Equilibrative Nucleoside Transporter (ENT)

Probab=98.53  E-value=4.3e-05  Score=75.17  Aligned_cols=107  Identities=15%  Similarity=0.057  Sum_probs=68.0

Q ss_pred             HHHHHHHHHhHhHHHHHHHHHhhcCCc-hHHHHHHHHHHHHHHHHHhcCC----------chHHHHHHHHHHHHHHHHHH
Q 039541          361 LSLAFNGLLDIPAYLLTFILIERWSRK-SSILTFCILSGTCSAICVAIGD----------EQEVLQIGLELASFFSACVA  429 (521)
Q Consensus       361 ~~~~~~~~~~~~~~~~~g~l~dr~g~~-~~~~~~~~~~~i~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~  429 (521)
                      ....+..++.++|+.+..+..- -++| +.+.+..+.=.+...++.+...          .+.+..++.++++|+..|-.
T Consensus       311 i~~~~fNvgD~vGR~~~~~~~~-p~~~~~~l~i~s~~R~iFIPlf~lcn~~~~~~~p~~~~~d~~~~~~~~l~gltnGy~  389 (437)
T TIGR00939       311 ICFLLFNLFDWLGRSLTSKFMW-PDEDSRWLPILSFLRVLFIPLFLLCNYPQRSRLPVFFPGDAYFIILMLLFGFSNGYL  389 (437)
T ss_pred             HHHHHHHHHHHHHhhhhheeEe-eCCCccchHHHHHHHHHHHHHHHHhcCCccccCCeeecccHHHHHHHHHHHHhhhHH
Confidence            3445566778888876544311 1222 1333333333333322222111          11267778889999999988


Q ss_pred             HHHHHHhhccccCchhhhhhhHHHHHhhhhhhhHHHHHH
Q 039541          430 FNVLLVFGTELFTTCVRNSTTSLVRQAVNLGAAFSPVLI  468 (521)
Q Consensus       430 ~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~p~~~  468 (521)
                      .+....+..+..++++|..+..++..+..+|-.+|..+.
T Consensus       390 ~s~~m~~~p~~v~~~e~e~aG~~~~~~l~~Gl~~Gs~l~  428 (437)
T TIGR00939       390 GSLSMCLAPRQVDPHEREVAGALMVIFLLVGLALGAVLS  428 (437)
T ss_pred             HHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            899999999999999998888888888777777776653

>COG2211 MelB Na+/melibiose symporter and related transporters [Carbohydrate transport and metabolism]

Probab=98.52  E-value=9.4e-06  Score=78.78  Aligned_cols=112  Identities=18%  Similarity=0.185  Sum_probs=94.4

Q ss_pred             chhhHHHHHHHHHHhhhhhhhccccCCCCchHHHHHHHHHHHHHHHHHhccc--cHHHHHHHHHHhhccchhhHhhhhhh
Q 039541          119 SGLPSSCFFIGCLLGGLALSTLGDSSSLGRKKLLFLSCFAMSITALATIFAN--NIWIYSTIRFVAGFFRAPIMTSVIVL  196 (521)
Q Consensus       119 ~~~~~s~~~lg~~i~~~~~g~l~dr~~~Grr~~l~~~~~~~~~~~~~~~~~~--~~~~l~~~r~l~G~~~g~~~~~~~~~  196 (521)
                      ..+.......+.+++.+++.++++|  +|+|+++.++.++.+++.++.-+.+  +.+.+++..++.++|.+...+...++
T Consensus       274 ~~~~~~~~~~~~l~~~~~~p~L~~~--~gkk~~~~~~~~~~~i~~~~~~f~~~~~~~l~~~~~~i~~~g~~~~~~l~wam  351 (467)
T COG2211         274 AYLLLLASGAGLLIGLILWPRLVKK--FGKKKLFLIGLLLLAVGYLLLYFTPAGSVVLIVVALIIAGVGTGIANPLPWAM  351 (467)
T ss_pred             HHHHHHHHHHHHHHHHHhHHHHHHH--hchHHHHHHHHHHHHHHHHHHHhhcCcchHHHHHHHHHHHHHhhccccccHHH
Confidence            3677777777888889999999999  9999999999999999999988875  78899999999999999999999999


Q ss_pred             eeeeecC-------cchhHHHHHHHHHHHHHHHHHHHH-HHhhc
Q 039541          197 LSEMVSK-------RWRGQVVIIGFTFFSFGLVSLPAV-AYLSR  232 (521)
Q Consensus       197 i~~~~~~-------~~rg~~~~~~~~~~~~G~~i~~~i-~~~~~  232 (521)
                      ++|..+-       +.-|...+......-+|.+++..+ |+.+.
T Consensus       352 ~~d~vDyge~~TG~R~eGi~~s~~tF~~K~g~ala~~~~g~~L~  395 (467)
T COG2211         352 VADTVDYGEWKTGVRREGIVYSGMTFFRKLGLALAGFIPGWILG  395 (467)
T ss_pred             hcchhhHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9887643       333777888888888888887755 66554

>PF03209 PUCC: PUCC protein; InterPro: IPR004896 This protein is required for high-level transcription of the PUC operon

Probab=98.42  E-value=1.9e-05  Score=74.51  Aligned_cols=145  Identities=12%  Similarity=0.120  Sum_probs=118.5

Q ss_pred             cceeeecceeeCCccccchhhHHHHHHHHHHhhhhhhhccccCCCCchHHHHHHHHHHHHHHHHHhc---cccHHHHHHH
Q 039541          102 TTIISDWSLECAGSSILSGLPSSCFFIGCLLGGLALSTLGDSSSLGRKKLLFLSCFAMSITALATIF---ANNIWIYSTI  178 (521)
Q Consensus       102 ~~i~~~~~~~~~~~~~~~~~~~s~~~lg~~i~~~~~g~l~dr~~~Grr~~l~~~~~~~~~~~~~~~~---~~~~~~l~~~  178 (521)
                      |.=.+.||++.+|.    .-+.+.+..|..+|....|++..| +.++|+.-.+++....++..+..+   ..+.+.+..+
T Consensus       233 Pygg~Vfgmsv~eT----T~Lta~~~~G~L~G~~~~g~~l~~-~~~~~~~a~~G~~~~~~~f~lii~a~~~~~~~~~~~~  307 (403)
T PF03209_consen  233 PYGGEVFGMSVGET----TRLTAFWGGGTLLGMLLAGFLLSR-RLGKKRTAALGCLLGALAFALIILAGPLGSPWLFRPG  307 (403)
T ss_pred             CchhHHcCCCHHHH----HHHHHHHHHHHHHHHHHHHHHhcC-CCCchHHHHHHHHHHHHHHHHHHHHHhcccchHHHHH
Confidence            44467799999887    889999999999999999998884 388888888888888877776544   4688999999


Q ss_pred             HHHhhccchhhHhhhhhheeeeecCcchhHHHHHHHHHHHHHHHHHHHHHHhh-----------cCCchhHHHHHHHHHH
Q 039541          179 RFVAGFFRAPIMTSVIVLLSEMVSKRWRGQVVIIGFTFFSFGLVSLPAVAYLS-----------RGSSWKMLYVWTSIPS  247 (521)
Q Consensus       179 r~l~G~~~g~~~~~~~~~i~~~~~~~~rg~~~~~~~~~~~~G~~i~~~i~~~~-----------~~~~wr~~f~~~~~~~  247 (521)
                      -++.|++.|.......+.+.|...+++.|..+|.++....++..++.++|...           ...++-.+|.+-++..
T Consensus       308 ~~l~G~g~G~f~vgals~mM~lt~~~~aG~~mG~WGaaQA~A~Glg~~~GG~~~D~~~~~~~~~~~~aY~~VF~lEa~ll  387 (403)
T PF03209_consen  308 VFLLGLGNGLFTVGALSLMMDLTSAGRAGLFMGAWGAAQAIARGLGTFLGGALRDLVRALFGNSPALAYGVVFALEAVLL  387 (403)
T ss_pred             HHHHHHhhhHHHHHHHHHHHhCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCcchHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999998888777777663221           1235677787777776


Q ss_pred             HHHH
Q 039541          248 IVCC  251 (521)
Q Consensus       248 ~~~~  251 (521)
                      ++.+
T Consensus       388 ~~a~  391 (403)
T PF03209_consen  388 LAAL  391 (403)
T ss_pred             HHHH
Confidence            6666

It is an integral membrane protein. The family includes other proteins form Rhodobacter eg. bacteriochlorophyll synthase.

>KOG2533 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]

Probab=98.41  E-value=9.3e-06  Score=80.58  Aligned_cols=140  Identities=14%  Similarity=0.112  Sum_probs=109.8

Q ss_pred             HHHHHHHHHHhHhHHHHHHHHHhhcCCchHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 039541          360 YLSLAFNGLLDIPAYLLTFILIERWSRKSSILTFCILSGTCSAICVAIGDEQEVLQIGLELASFFSACVAFNVLLVFGTE  439 (521)
Q Consensus       360 ~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  439 (521)
                      .....+..++-+++.+.++.+.||++-.+.+....++.++..++-....+.  +.+++.-++.|++.+..+|....++..
T Consensus        84 ~~~~t~F~v~Yii~~~p~~~L~~r~~ls~~l~~~~~~w~~~~~~~~~~~s~--~~~ialr~llGl~es~~wP~~~~~lg~  161 (495)
T KOG2533|consen   84 GVLDTVFYVGYIIGQFPSGLLGDRFPLSKGLSVSGILWGLFGFLTAAVHSF--PGLIALRFLLGLFESGGWPGVVAILGN  161 (495)
T ss_pred             hhHHHHHHHHHHHHHhhHHHHHHhCChHHHHHHHHHHHHHHHHHHHHHhhh--HHHHHHHHHHHHHhcccchHHHHHHHh
Confidence            344456667888899999999999996666655555555544444333333  678888999999999999999999999


Q ss_pred             ccCchhhhhhhHHHHHhhhhhhhHHHHHHHh--------hccchhHHHHHHHHHHHHHhHh-hhccccCCC
Q 039541          440 LFTTCVRNSTTSLVRQAVNLGAAFSPVLISA--------GRQNEFLSFGVFGLVVFCFGFF-VVFLPETIG  501 (521)
Q Consensus       440 ~~~~~~r~~~~~~~~~~~~~g~~~~p~~~~~--------~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~  501 (521)
                      -+.+++|+..+|+.+....+|+++|+++...        ...++.+.|++-|++.+...++ ++++|+...
T Consensus       162 wy~~~e~g~r~~~~~a~~~~g~i~ggliA~g~~~~~~~~~~~gW~~~FiI~G~i~~~~gi~~f~~lp~~P~  232 (495)
T KOG2533|consen  162 WYGKSERGLRMGIWYASASLGNIFGGLIAYGVFKLNGSGGLAGWRWLFIIEGVITLVLGIVVFFFLPDNPS  232 (495)
T ss_pred             hcChhhhhhhHHHHHHhcchhhHHHHHHHHHhhhhcCCCCcCCceeehhHHHHHHHHHHheEEEEecCChh
Confidence            9999999999999999999999999988753        3457889999999988877655 566675443

>COG2807 CynX Cyanate permease [Inorganic ion transport and metabolism]

Probab=98.40  E-value=2.5e-06  Score=78.49  Aligned_cols=151  Identities=15%  Similarity=0.125  Sum_probs=119.4

Q ss_pred             CcceeeecceeeCCccccchhhHHHHHHHHHHhhhhhhhccccCCCCchHHHHHHHHHHHHHHHHHhccccHHHHHHHHH
Q 039541          101 DTTIISDWSLECAGSSILSGLPSSCFFIGCLLGGLALSTLGDSSSLGRKKLLFLSCFAMSITALATIFANNIWIYSTIRF  180 (521)
Q Consensus       101 ~~~i~~~~~~~~~~~~~~~~~~~s~~~lg~~i~~~~~g~l~dr~~~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~  180 (521)
                      +|.|..|-|+|..+.    |++.+...+.....++....+++| +-++|+..+...+++.++.+.+.+.+.-..++- -+
T Consensus       231 LP~ili~~G~sa~~a----G~llsl~~l~~~~~~ll~P~la~R-~~n~r~~~~~~~~~~l~G~~G~~~~P~~~~~lw-~~  304 (395)
T COG2807         231 LPAILIDRGLSAAEA----GSLLSLMQLAQLPTALLIPLLARR-SKNQRPLVVLALLLMLVGLVGLLLAPGQLPILW-AL  304 (395)
T ss_pred             HHHHHHHcCCCHHHh----hhHHHHHHHHHHHHHHHHHHHHHH-hcccchHHHHHHHHHHHHHHHHHHhhhhHHHHH-HH
Confidence            688899999999888    999999999999999999999996 367888888899999999998888865444443 49


Q ss_pred             HhhccchhhHhhhhhheeeeecC-cchhHHHHHHHHHHHHHHHHHHHH-HHhhc-CCchhHHHHHHHHHHHHHHhhhcee
Q 039541          181 VAGFFRAPIMTSVIVLLSEMVSK-RWRGQVVIIGFTFFSFGLVSLPAV-AYLSR-GSSWKMLYVWTSIPSIVCCIIIYPF  257 (521)
Q Consensus       181 l~G~~~g~~~~~~~~~i~~~~~~-~~rg~~~~~~~~~~~~G~~i~~~i-~~~~~-~~~wr~~f~~~~~~~~~~~~~~~~~  257 (521)
                      +.|+|.|..++.....+.+..+. ++-++..++.+....+=..+||.+ |++-+ ..+|+...+..+...++..+..+..
T Consensus       305 llG~G~G~~F~laL~li~~rs~~a~~Aa~LSgmaQg~GYllAa~GP~l~G~lhDa~gsw~~~~~~l~~~~i~m~i~Gl~a  384 (395)
T COG2807         305 LLGLGQGGAFPLALTLILLRSSDAAIAAALSGMAQGVGYLLAAFGPWLFGFLHDATGSWSAPLVLLALATLLMLIFGLRA  384 (395)
T ss_pred             HHhCccchHHHHHHHHHHhhcCChHHHHHHHHHhhhhhHHHHhhhhhhHhHHHHhcCChHHHHHHHHHHHHHHHHHHhhc
Confidence            99999999999999999888754 444555666655555555567877 77665 3589999988888877777555443

>PF13000 Acatn: Acetyl-coenzyme A transporter 1; InterPro: IPR024371 Acetyl-coenzyme A transporter 1 (also known as acatn) is a multipass transmembrane protein that appears to promote 9-O-acetylation in gangliosides [, ]

Probab=98.39  E-value=8.2e-05  Score=71.70  Aligned_cols=265  Identities=14%  Similarity=0.071  Sum_probs=128.5

Q ss_pred             hhhhhheeeeecCcchhHHHHHHHHHHHHHHHHHHHHHHhhc--------------CCc---hhHHHHHHHHHHHHHHhh
Q 039541          191 TSVIVLLSEMVSKRWRGQVVIIGFTFFSFGLVSLPAVAYLSR--------------GSS---WKMLYVWTSIPSIVCCII  253 (521)
Q Consensus       191 ~~~~~~i~~~~~~~~rg~~~~~~~~~~~~G~~i~~~i~~~~~--------------~~~---wr~~f~~~~~~~~~~~~~  253 (521)
                      .+.-.+.-.+..+++++.|..-...+.+.|..++..+=..++              ..|   -..-..+.+...++..+.
T Consensus       137 IAVDGWALT~Ls~~n~~~ASTcqtvG~~~Gyfls~tvFlalns~~f~Nky~r~~p~~~glvtl~~yl~fwg~~~l~~T~~  216 (544)
T PF13000_consen  137 IAVDGWALTMLSPENVGYASTCQTVGQTAGYFLSFTVFLALNSPDFCNKYLRSTPSDEGLVTLSGYLKFWGWVFLIVTIL  216 (544)
T ss_pred             ceeehhhhhhcChhhcchHHHHHHhHhhhhHHHHHHHHHhhCCHHHHHHhcccCCCCCCeeeHHHHHHHHHHHHHHHHHH
Confidence            334445555667888999888888888888887665422211              111   112223445555555545


Q ss_pred             hceeeecchhHHHhcCCHHHHHHHHHHHhhhcCCCCCCCccccccCCCCC-ccccCCCcccccccHHHHhccHHHHHHHH
Q 039541          254 IYPFISESPRWLFIHGHEAEAMAVLKRLASRSNYQSDYGLESCCLSNMPP-KAKNVIPKLDLYSSLKDLFNRKWALRRLL  332 (521)
Q Consensus       254 ~~~~~~esp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~~~~~~~~~~  332 (521)
                      ..++-+|.|.... ..+.+..+       . .++.  ......+.++.+. ..++...-.+....+.+++|.|..+...+
T Consensus       217 v~~~k~E~~~~~~-~~~~~~~~-------~-~~~~--~~~~~~~~~~~~~~~~~~~~~i~~~Y~~l~~ilkLp~V~~li~  285 (544)
T PF13000_consen  217 VAFFKKEKPHSES-LPKIEPIN-------K-SDGK--SKEISIEYDESDVISTEEILSIKDVYKSLWKILKLPNVQTLII  285 (544)
T ss_pred             HheEeeccccccc-Cccccccc-------c-cccc--ccccceecccccccchhhhhhHHHHHHHHHHHHcCchHHHHHH
Confidence            6666677653110 00000000       0 0000  0000000000000 00000111122335566778887666555


Q ss_pred             HHHHHHHHHHHHHHhHHhhccCCCccHHHHHHHHHHHhHhHHHHHHHHHhhcC--Cc-----------------------
Q 039541          333 TIMALAFGIGVVYFGLLLGVGNLSFNIYLSLAFNGLLDIPAYLLTFILIERWS--RK-----------------------  387 (521)
Q Consensus       333 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g--~~-----------------------  387 (521)
                      +....-++....--...+-+-+.|.+-..... ..+..++..++.++++-|+.  ++                       
T Consensus       286 ilL~~KigF~a~da~T~LKLlEkG~~KE~LAl-~~li~~P~qii~~~~~~Kws~g~~P~~~~~~~l~~~~~~~~~~~~l~  364 (544)
T PF13000_consen  286 ILLTAKIGFQANDAVTSLKLLEKGLSKEDLAL-LVLIDFPFQIILPYYIGKWSAGSPPLDVDNKALPNFSRANKIIRLLV  364 (544)
T ss_pred             HHHHHHhccccchhhhHHHHHHcCCCHHHhHH-HHHHhhhHHHHHHHHhhhhhcCCCccccccccccccccccchhhhhh
Confidence            55555444433333333334445554333322 23566777777777777762  22                       


Q ss_pred             ------hHHHHHHHHHHHH----HHHHHhcCCchH------HHHHHHHHHHHHHHHHHHHHHHHhhccccCchhhhhhhH
Q 039541          388 ------SSILTFCILSGTC----SAICVAIGDEQE------VLQIGLELASFFSACVAFNVLLVFGTELFTTCVRNSTTS  451 (521)
Q Consensus       388 ------~~~~~~~~~~~i~----~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~  451 (521)
                            +....++..-.+.    ..+....+..+.      ...++.-++..+.....+....++-+.+..|..-|+.+.
T Consensus       365 g~~g~L~~Wl~af~gRL~~a~l~~~iV~~fP~~g~v~~~Yf~lvI~~~~l~sf~stvmFVai~AFharISDP~IGGTYMT  444 (544)
T PF13000_consen  365 GDAGALRPWLWAFWGRLVAALLAQLIVYFFPSDGPVPTYYFLLVIIQHVLSSFMSTVMFVAIMAFHARISDPAIGGTYMT  444 (544)
T ss_pred             ccchhhHHHHHHHHHHHHHHHHHHheEEeCCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCcccchHHHH
Confidence                  1112222211111    111122231111      222333444445555666778888889999999999999


Q ss_pred             HHHHhhhhhhhHHHHH
Q 039541          452 LVRQAVNLGAAFSPVL  467 (521)
Q Consensus       452 ~~~~~~~~g~~~~p~~  467 (521)
                      +.|++.++|+--...+
T Consensus       445 LLNTvSNLGGtWP~~~  460 (544)
T PF13000_consen  445 LLNTVSNLGGTWPRTF  460 (544)
T ss_pred             HHHHHHhcCCCchHHH
Confidence            9999999997654433

This entry represents acatn and its homologues.; GO: 0008521 acetyl-CoA transporter activity, 0016021 integral to membrane

>TIGR00788 fbt folate/biopterin transporter

Probab=98.39  E-value=8.6e-07  Score=88.85  Aligned_cols=121  Identities=12%  Similarity=0.092  Sum_probs=104.2

Q ss_pred             eecceeeCCccccchhhHHHHHHHHHHhhhhhhhccccCCCCchHHHHHHHHHHHHHHHHHhcc----------ccHHHH
Q 039541          106 SDWSLECAGSSILSGLPSSCFFIGCLLGGLALSTLGDSSSLGRKKLLFLSCFAMSITALATIFA----------NNIWIY  175 (521)
Q Consensus       106 ~~~~~~~~~~~~~~~~~~s~~~lg~~i~~~~~g~l~dr~~~Grr~~l~~~~~~~~~~~~~~~~~----------~~~~~l  175 (521)
                      +.+|.++.+.    |++.+...++..++....+++.+|  ++.|+++.++.++.+++.+.....          ++.+.+
T Consensus       281 ~~lG~s~~~~----G~~~~~~~v~~i~g~~~~~~~~~~--~~~r~~l~~~~~l~~~~~~~~~~l~~~~~~~~gi~~~~~~  354 (468)
T TIGR00788       281 QCLPGGPSFS----GMSKVVGNLGSLCGVGGYDRFLKT--FPYRLLFGVTTLLYTLSSLFDLILVKRWNLAFGISDEVFV  354 (468)
T ss_pred             ccCCCCcchh----hhHHHHHHHHHHHHHHHHHHHHhh--CCHHHHHHHHHHHHHHHHhCceeeeeccccccCCCCeeee
Confidence            4688898777    999999999999999999999999  999999999999999988665321          344455


Q ss_pred             HHHHHHhhccchhhHhhhhhheeeeecCcchhHHHHHHHHHHHHHHHHHHHHH-Hhhc
Q 039541          176 STIRFVAGFFRAPIMTSVIVLLSEMVSKRWRGQVVIIGFTFFSFGLVSLPAVA-YLSR  232 (521)
Q Consensus       176 ~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~rg~~~~~~~~~~~~G~~i~~~i~-~~~~  232 (521)
                      +..-++.+++.+........++.+..|++++|...++++...++|..+++.++ .+.+
T Consensus       355 ~~~~~l~~~~~g~~~~~~~~~~~~~~p~~~egt~~al~~s~~~lg~~v~~~~gg~l~~  412 (468)
T TIGR00788       355 LGDSIIAEVLAQLKFMPFLVLLARLCPSGCESSVFALLASILHLGSSVSGFLGVLLME  412 (468)
T ss_pred             eehhHHHHHHHHHHHccHHHHHHHhCCCCceehHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            66678999999999999999999999999999999999999999999999874 4444

The only functionally characterized members of the family are from protozoa and include FT1, the major folate transporter in Leishmania, and BT1, the Leishmania biopterin/folate transporter. A related protein in Trypanosoma brucei, ESAGIO, shows weak folate/biopterin transport activity.

>COG0738 FucP Fucose permease [Carbohydrate transport and metabolism]

Probab=98.34  E-value=1.4e-05  Score=74.77  Aligned_cols=123  Identities=14%  Similarity=-0.053  Sum_probs=96.5

Q ss_pred             HHhhccCCCccH---HHHHHHHHHHhHhHHHHHHHHHhhcCCchHHHHHHHHHHHHHHHHHhcCCchH-HHHHHHHHHHH
Q 039541          348 LLLGVGNLSFNI---YLSLAFNGLLDIPAYLLTFILIERWSRKSSILTFCILSGTCSAICVAIGDEQE-VLQIGLELASF  423 (521)
Q Consensus       348 ~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~i~~~~~~~~~~~~~-~~~~~~~~~~~  423 (521)
                      +|.+.+.+..+.   .........+-.++++..+++.+|+|+|+-++.+..++++++.++.-...... ...++..++.+
T Consensus        36 ip~l~~~f~ls~~~a~liqfaff~gYf~~~lpa~~~~kk~gyk~gi~lgL~l~avg~~lF~pAa~~~~y~~FL~~lFila  115 (422)
T COG0738          36 IPHLKEVFDLTYFEASLIQFAFFGGYFIMSLPAGLLIKKLGYKAGIVLGLLLYAVGAALFWPAASSKSYGFFLVALFILA  115 (422)
T ss_pred             HHHHHHHhCccHHHHHHHHHHHHHHHHHHhccHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHH
Confidence            455444444433   33334444566678889999999999999999999999999988864433322 45667778888


Q ss_pred             HHHHHHHHHHHHhhccccCchhhhhhhHHHHHhhhhhhhHHHHHHHh
Q 039541          424 FSACVAFNVLLVFGTELFTTCVRNSTTSLVRQAVNLGAAFSPVLISA  470 (521)
Q Consensus       424 ~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~p~~~~~  470 (521)
                      .+.+........++..+.+++....-+.+...++.+|++++|.+++.
T Consensus       116 ~Gi~~LetaaNp~v~~lg~~~~a~~rlnl~q~fn~lGa~~gp~~g~~  162 (422)
T COG0738         116 SGIGLLETAANPYVTLLGKPESAAFRLNLAQAFNGLGAILGPLLGSS  162 (422)
T ss_pred             hhhHHHHhccchHHHHhCCchhHHHHHHHHHHhhhhHHHHHHHHHHH
Confidence            88888889999999999999888888999999999999999999864

>KOG3574 consensus Acetyl-CoA transporter [Inorganic ion transport and metabolism]

Probab=98.34  E-value=6.9e-05  Score=69.29  Aligned_cols=321  Identities=13%  Similarity=0.062  Sum_probs=167.4

Q ss_pred             CcceeeecceeeCCccccchhhHHHHHHHHHHhhhhhhhccc-----cCCCCchHHHHH-HHHHHHHHHHHHhc------
Q 039541          101 DTTIISDWSLECAGSSILSGLPSSCFFIGCLLGGLALSTLGD-----SSSLGRKKLLFL-SCFAMSITALATIF------  168 (521)
Q Consensus       101 ~~~i~~~~~~~~~~~~~~~~~~~s~~~lg~~i~~~~~g~l~d-----r~~~Grr~~l~~-~~~~~~~~~~~~~~------  168 (521)
                      +|.+-+.=|.|-++.    +...-++ ..+ .--++|.++.|     |  +||||..++ ...+.+....+.+.      
T Consensus        53 iP~lL~ak~vSyt~~----a~fS~ay-~P~-sLKllWaPiVDs~y~k~--~GrrksWvvp~q~llG~~mllLs~~v~~~~  124 (510)
T KOG3574|consen   53 IPLLLQAKGVSYTSQ----AIFSFAY-WPF-SLKLLWAPIVDSVYSKR--FGRRKSWVVPCQYLLGLFMLLLSYLVDRGL  124 (510)
T ss_pred             hHHHhcCCCcchhhh----hhhhhhh-hHH-HHHHHHHhhhHHHHHHh--hccccceeeehHHHHHHHHHHHhhCCCccc
Confidence            677777666766554    3332222 111 23467889999     8  999987654 33333333333222      


Q ss_pred             -----cccHHHHHHHHHHhhccchhhHhhhhhheeeeecCcchhHHHHHHHHHHHHHHHHHHHHHHhhc--------CCc
Q 039541          169 -----ANNIWIYSTIRFVAGFFRAPIMTSVIVLLSEMVSKRWRGQVVIIGFTFFSFGLVSLPAVAYLSR--------GSS  235 (521)
Q Consensus       169 -----~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~rg~~~~~~~~~~~~G~~i~~~i~~~~~--------~~~  235 (521)
                           .++...+....++.-+..+.--.+.-.+.-.+..+++-|-+......+.+.|.+++..+-..++        -.+
T Consensus       125 g~ng~~p~v~~lt~~f~LLnflaAtQDIAVDgwALtmLs~e~lgyaST~q~Vg~~~GyfL~~~ifLaL~s~dF~N~y~rs  204 (510)
T KOG3574|consen  125 GGNGGLPNVVALTLLFLLLNFLAATQDIAVDGWALTMLSRENLGYASTCQSVGQTAGYFLGNVVFLALESPDFCNTYLRS  204 (510)
T ss_pred             ccCCCCcchHHHHHHHHHHHHHHhhhhhhhhHHHHHhcCHhhcCchhHHHHHHHhhhHHhhcceeeEecChhhhhHHHhc
Confidence                 2344444445566666666666777777777888899898888888888888887765411111        012


Q ss_pred             hh---------HHHHHHHHHHHHHHhhhceeeecchhHHHhcCCHHHHHHHHHHHhhhcCCCCCCCccccccCCCCCccc
Q 039541          236 WK---------MLYVWTSIPSIVCCIIIYPFISESPRWLFIHGHEAEAMAVLKRLASRSNYQSDYGLESCCLSNMPPKAK  306 (521)
Q Consensus       236 wr---------~~f~~~~~~~~~~~~~~~~~~~esp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  306 (521)
                      |.         ...++.+.+.++...+..+.-+|.+..     ..+|....+                            
T Consensus       205 ~P~~~g~ItL~gy~~fwg~~~~vat~Lv~~~kke~~~~-----~~~e~~~~i----------------------------  251 (510)
T KOG3574|consen  205 IPLDQGFITLAGYLWFWGALFIVATTLVALLKKENDES-----VDEELELGI----------------------------  251 (510)
T ss_pred             CcCccceEEhhHHHHHHHHHHHHHHHHHHHhcCCCchh-----hhhhhhcCH----------------------------
Confidence            22         223333444444442333332332210     000000000                            


Q ss_pred             cCCCcccccccHHHHhccHHHHHHHHHHHHHHHHHHHHHHhHHhhccCCCccHHHHHHHHHHHhHhHHHHHHHHHhhcCC
Q 039541          307 NVIPKLDLYSSLKDLFNRKWALRRLLTIMALAFGIGVVYFGLLLGVGNLSFNIYLSLAFNGLLDIPAYLLTFILIERWSR  386 (521)
Q Consensus       307 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~  386 (521)
                           .+.+.-++++++-|..+....+....-++....--..+.-+-+.|.+......+. +..++..++.++..-|+..
T Consensus       252 -----~~~yk~l~~vLklk~v~~la~i~lt~K~gf~a~da~t~LkLle~Gv~ke~Lal~~-v~~~plqI~l~~~~gk~ta  325 (510)
T KOG3574|consen  252 -----HESYKLLRDVLKLKSVRWLAGILLTGKLGFQAADALTSLKLLEHGVPKEELALIA-VPLVPLQIALPLYIGKWTA  325 (510)
T ss_pred             -----HHHHHHHHHHHcCccHHHHHHHHHHHHHHhhhhhhccchHHHHcCCChhHheeee-eehhhHHHhhhhhheeecC
Confidence                 0111245677777776655555544444444443344444445555443333222 5566666666666666532


Q ss_pred             --ch--------HHHHHHHHHHHHHHH-HHhcCC-chH------HHHHHHHHHHHHHHHHHHHHHHHhhccccCchhhhh
Q 039541          387 --KS--------SILTFCILSGTCSAI-CVAIGD-EQE------VLQIGLELASFFSACVAFNVLLVFGTELFTTCVRNS  448 (521)
Q Consensus       387 --~~--------~~~~~~~~~~i~~~~-~~~~~~-~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~  448 (521)
                        |+        ...+........+.. ...... .+.      ...+....+.++.....+...++..+++.++...|+
T Consensus       326 ~~~pl~~~lka~~~R~~~~~~~t~Lv~~~~~~~~~~G~~~~~~~il~i~~y~~~~~~~ts~fv~~maf~aqisdp~iggT  405 (510)
T KOG3574|consen  326 GPRPLNVFLKAVPYRLGGGLVQTALVWWTPTLGHSDGTFPRGYYILLITSYAFHQVFVTSMFVSGMAFHAQISDPAIGGT  405 (510)
T ss_pred             CCCcchHHHHhhhHHHHHHHHHHHHHhhhcccccCCCceeechHHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccCcc
Confidence              22        112222221111111 111111 100      122223445555555666778888999999999999


Q ss_pred             hhHHHHHhhhhhhhHHHHHH
Q 039541          449 TTSLVRQAVNLGAAFSPVLI  468 (521)
Q Consensus       449 ~~~~~~~~~~~g~~~~p~~~  468 (521)
                      .+.+.|+..++|+---..+.
T Consensus       406 ymTlLNTLsnLGg~wp~tv~  425 (510)
T KOG3574|consen  406 YMTLLNTLSNLGGNWPGTVA  425 (510)
T ss_pred             HHHHHHHHHHhcCCcHHHHH
Confidence            99999999999876444433

>PF06779 DUF1228: Protein of unknown function (DUF1228); InterPro: IPR010645 This entry represents the N terminus of several putative bacterial membrane proteins, which may be sugar transporters

Probab=98.32  E-value=5.8e-07  Score=64.63  Aligned_cols=70  Identities=21%  Similarity=0.358  Sum_probs=66.0

Q ss_pred             CcceeeecceeeCCccccchhhHHHHHHHHHHhhhhhhhccccCCCCchHHHHHHHHHHHHHHHHHhccccHHHHH
Q 039541          101 DTTIISDWSLECAGSSILSGLPSSCFFIGCLLGGLALSTLGDSSSLGRKKLLFLSCFAMSITALATIFANNIWIYS  176 (521)
Q Consensus       101 ~~~i~~~~~~~~~~~~~~~~~~~s~~~lg~~i~~~~~g~l~dr~~~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~  176 (521)
                      +|.+++|.++|.++.    |++.+..++|+.+|++...++.++  ..+++.+..+++...+..+.+++.++++.+.
T Consensus        15 LP~M~~~~~ls~~~a----g~lasaNy~GYL~GAl~~~~~~~~--~~~~~~~~~~l~~~~~~~~~ma~~~~~~~w~   84 (85)
T PF06779_consen   15 LPLMQADGGLSLSQA----GWLASANYLGYLVGALLASRLPRH--SRPRRLLRAGLLLTVLSTAAMALTHSFWLWS   84 (85)
T ss_pred             hHHHHHhcCCCHHHH----HHHHHHHHHHHHHHHHHHHHHHhc--ccHHHHHHHHHHHHHHHHHHHHHHhchHHHh
Confidence            999999999999887    999999999999999999999999  8999999999999999999999999887653

Note that many members are hypothetical proteins.

>PRK11462 putative transporter; Provisional

Probab=98.30  E-value=3.3e-05  Score=77.39  Aligned_cols=110  Identities=18%  Similarity=0.247  Sum_probs=75.9

Q ss_pred             hhhHHHHHHHHHHhhhhhhhccccCCCCchHHHHHHHHHHHHHHHHHhccc--cHHHHHHHHHHhhccchhhHhhhhhhe
Q 039541          120 GLPSSCFFIGCLLGGLALSTLGDSSSLGRKKLLFLSCFAMSITALATIFAN--NIWIYSTIRFVAGFFRAPIMTSVIVLL  197 (521)
Q Consensus       120 ~~~~s~~~lg~~i~~~~~g~l~dr~~~Grr~~l~~~~~~~~~~~~~~~~~~--~~~~l~~~r~l~G~~~g~~~~~~~~~i  197 (521)
                      +.+...+.++.+++.+++++++||  +|+|+++..+..+.++..++..+.+  +.+.+++.-++.|++.+...+...+++
T Consensus       266 ~~~l~~~~i~~iig~~l~~~l~~r--~gkk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~l~~~m~  343 (460)
T PRK11462        266 VAFLTTYCVGNLIGSALAKPLTDW--KCKVTIFWWTNALLAVISLAMFFVPMQASITMFVFIFVIGVLHQLVTPIQWVMM  343 (460)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH--hChHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            567778888999999999999999  9999988765554444344433332  233444555677888777777777777


Q ss_pred             eeeec-------CcchhHHHHHHHHHHHHHHHHHHHH-HHhh
Q 039541          198 SEMVS-------KRWRGQVVIIGFTFFSFGLVSLPAV-AYLS  231 (521)
Q Consensus       198 ~~~~~-------~~~rg~~~~~~~~~~~~G~~i~~~i-~~~~  231 (521)
                      +|..+       +++.|...+.......+|..+++.+ |.++
T Consensus       344 ad~~d~~e~~tG~r~~g~~~a~~~f~~Klg~alg~~i~g~iL  385 (460)
T PRK11462        344 SDTVDYGEWCNGKRLTGISFAGTLFVLKLGLAFGGALIGWML  385 (460)
T ss_pred             HHhHhhhHHhcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            77766       3333565677667777888887766 4444

>COG3202 ATP/ADP translocase [Energy production and conversion]

Probab=98.29  E-value=0.0015  Score=63.16  Aligned_cols=255  Identities=15%  Similarity=0.145  Sum_probs=144.2

Q ss_pred             cceeeecceeeCCccccchhhHHHHHH-HHHHhhhhhhhccccCCCCchHHHHHHHHHHHHHHHHHhcc---------cc
Q 039541          102 TTIISDWSLECAGSSILSGLPSSCFFI-GCLLGGLALSTLGDSSSLGRKKLLFLSCFAMSITALATIFA---------NN  171 (521)
Q Consensus       102 ~~i~~~~~~~~~~~~~~~~~~~s~~~l-g~~i~~~~~g~l~dr~~~Grr~~l~~~~~~~~~~~~~~~~~---------~~  171 (521)
                      ..+++.+.++.... ....++-+..-+ +..+..++.+++.++  +.|.+++.+-+..+....+++++.         ++
T Consensus        47 R~lKDslvv~~~ga-e~I~FlK~~~vlP~avif~~iy~kl~~~--lt~~~vF~~~~~~F~~fF~LFa~Vi~P~~~~~hp~  123 (509)
T COG3202          47 RSLKDSLVVTRQGA-ESISFLKTWGVLPSAVIFTIIYQKLLNI--LTREKVFYIILGFFLGFFALFAFVIYPYKDILHPD  123 (509)
T ss_pred             HHhhhheEeecCcc-hhhHHHHHHHhchHHHHHHHHHHHHHhh--cCHHHHHHHHHHHHHHHHHHHHHHHhccccccCCC
Confidence            34566666664444 555777777777 777888999999999  999999988888777777777653         11


Q ss_pred             -----------------------HHHHHHHHHHhhccchhhHh-hhhhheeeeecCcchhHHHHHHHHHHHHHHHHHHHH
Q 039541          172 -----------------------IWIYSTIRFVAGFFRAPIMT-SVIVLLSEMVSKRWRGQVVIIGFTFFSFGLVSLPAV  227 (521)
Q Consensus       172 -----------------------~~~l~~~r~l~G~~~g~~~~-~~~~~i~~~~~~~~rg~~~~~~~~~~~~G~~i~~~i  227 (521)
                                             .|...+...+.=+=...... .-.....|.+..++-.|..++++.+.+++..++..+
T Consensus       124 ~~~~~~~~~~~p~~l~~~ili~~~Ws~s~~Yi~aELWgslV~S~lFw~faNeitt~~eakRFy~lf~l~~ni~lllsg~~  203 (509)
T COG3202         124 PEFSRDLFADLPMFLKWFILIVGEWSYSLFYIMAELWGSLVLSLLFWQFANEITTIEEAKRFYPLFGLGANISLLLSGEV  203 (509)
T ss_pred             HHHHHHHHhhCCccceeeeEeecchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHhhhhHHHHHHHHHHHHHHHHHH
Confidence                                   12222222222222222222 334567899998999999999999999999987766


Q ss_pred             -HHhhcCC-c---------hhHHHHHHHHHHHHHHhhhceee----ecchhHHHhcCCHHHHHHHHHHHhhhcCCCCCCC
Q 039541          228 -AYLSRGS-S---------WKMLYVWTSIPSIVCCIIIYPFI----SESPRWLFIHGHEAEAMAVLKRLASRSNYQSDYG  292 (521)
Q Consensus       228 -~~~~~~~-~---------wr~~f~~~~~~~~~~~~~~~~~~----~esp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  292 (521)
                       .++.++. .         -+..+.+.+..+++.. ++..++    .+.|+...      ++.                 
T Consensus       204 ~~~~~k~~~~~~~~~~~~~~~~~~~vi~~~~~i~~-~l~~~~~r~il~~~~f~~------~~~-----------------  259 (509)
T COG3202         204 TSWLSKHRDALASEFKDLLLQILFIVIVILGIIAI-LLYRYINRNVLTDPLFYL------RAK-----------------  259 (509)
T ss_pred             HHHHhhchhhHhHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHhhcccCcchhH------HHh-----------------
Confidence             5555411 1         2333333343333333 332222    22222110      000                 


Q ss_pred             ccccccCCCCCccccCCCcccccccHHHHhccHHHHHHHHHHHHHHHHHHHHHHhH----HhhccCCC-ccH--HHHHHH
Q 039541          293 LESCCLSNMPPKAKNVIPKLDLYSSLKDLFNRKWALRRLLTIMALAFGIGVVYFGL----LLGVGNLS-FNI--YLSLAF  365 (521)
Q Consensus       293 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~-~~~--~~~~~~  365 (521)
                                .++++++.+....++++-+.++|.++...+....+..+.+.....-    ....++.. ...  ......
T Consensus       260 ----------~kk~~~k~k~~~~~s~k~i~~SkyL~~ial~vl~Y~v~inLvE~~wKs~ik~~~~~~~~~~~f~~~~~~~  329 (509)
T COG3202         260 ----------KKKKKKKLKLGLIESFKMILRSKYLGAIALLVLAYGVSINLVEGVWKSGIKELYPTTNEYTAFMGRFQIW  329 (509)
T ss_pred             ----------cccccccccCcHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhcCChhHHHHHHHHHHHH
Confidence                      0011122223334577888899987776666666666665544321    11111111 111  111233


Q ss_pred             HHHH-hHhHHHHHHHHHhhcCCchHHHHH
Q 039541          366 NGLL-DIPAYLLTFILIERWSRKSSILTF  393 (521)
Q Consensus       366 ~~~~-~~~~~~~~g~l~dr~g~~~~~~~~  393 (521)
                      .++. .++...+++-+.+|.|-....++.
T Consensus       330 tgvv~~v~~~~~~s~~ir~~GW~~~Alit  358 (509)
T COG3202         330 TGVVSLVVFLFPGSNLIRRVGWFTGALIT  358 (509)
T ss_pred             HHHHHHHHHHhhhHHHHHHhhHHHHHHHH
Confidence            4444 445566788899998876544443

>PF00083 Sugar_tr: Sugar (and other) transporter; InterPro: IPR005828 Recent genome-sequencing data and a wealth of biochemical and molecular genetic investigations have revealed the occurrence of dozens of families of primary and secondary transporters

Probab=98.29  E-value=1.3e-08  Score=102.20  Aligned_cols=154  Identities=19%  Similarity=0.251  Sum_probs=102.1

Q ss_pred             CcceeeecceeeCCccccchhhHHHHHHHHHHhhhhhhhccccCCCCchHHHHHHHHHHHHHHHHHh--c---ccc----
Q 039541          101 DTTIISDWSLECAGSSILSGLPSSCFFIGCLLGGLALSTLGDSSSLGRKKLLFLSCFAMSITALATI--F---ANN----  171 (521)
Q Consensus       101 ~~~i~~~~~~~~~~~~~~~~~~~s~~~lg~~i~~~~~g~l~dr~~~Grr~~l~~~~~~~~~~~~~~~--~---~~~----  171 (521)
                      .+.+.+..+.+...      .......+...++.++..++.||  +|||++++.+..+.+++.+..+  .   .++    
T Consensus       276 ~~~i~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~--~GRr~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~  347 (451)
T PF00083_consen  276 SPSIFENAGISNSF------LATLILGLVNFLGTLLAIFLIDR--FGRRKLLIIGLLLMAICSLILGIIFFLGVSSSSWW  347 (451)
T ss_pred             cccccccccccccc------ccccccccccccccccccccccc--ccccccccccccccccccccccccccccccccccc
Confidence            45666777766641      11122234444666777799999  9999999999999888888775  1   121    


Q ss_pred             -HHHHHHHHHHhhccchhhHhhhhhheeeeecCcchhHHHHHHHHHHHHHHHHHHHH-HHhhcCCchhHHHHHHHHHHHH
Q 039541          172 -IWIYSTIRFVAGFFRAPIMTSVIVLLSEMVSKRWRGQVVIIGFTFFSFGLVSLPAV-AYLSRGSSWKMLYVWTSIPSIV  249 (521)
Q Consensus       172 -~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~rg~~~~~~~~~~~~G~~i~~~i-~~~~~~~~wr~~f~~~~~~~~~  249 (521)
                       ...+............+..+....+..|.+|.+.|+++.++......++.++++.+ ..+.+..+-...+++.++++++
T Consensus       348 ~~~~i~~~~l~~~~~~~g~~~~~~~~~~ElfPt~~R~~~~~~~~~~~~i~~~i~~~~~~~~~~~~~~~~~~~i~~~~~~i  427 (451)
T PF00083_consen  348 SILSIVFLALFFAFFSLGWGPLPWIYTAELFPTKVRSTGIGLSYAVGRIGGFIIPFLFPYLFNNLGGWGVFLIFAGVCLI  427 (451)
T ss_pred             ccccceeeeeccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccchhhHHHHHH
Confidence             22222222221112213456667889999999999999999998888888888777 4555544424455566666666


Q ss_pred             HHhhhceeeecch
Q 039541          250 CCIIIYPFISESP  262 (521)
Q Consensus       250 ~~~~~~~~~~esp  262 (521)
                      ..++.++++|||.
T Consensus       428 ~~i~~~~~lpET~  440 (451)
T PF00083_consen  428 AIIFVYFFLPETK  440 (451)
T ss_pred             HHhheeEEEeeCC
Confidence            6668889999984

Two such families have been found to occur ubiquitously in all classifications of living organisms. These are the ATP-binding cassette (ABC) superfamily and the major facilitator superfamily (MFS), also called the uniporter-symporter-antiporter family. While ABC family permeases are in general multicomponent primary active transporters, capable of transporting both small molecules and macromolecules in response to ATP hydrolysis the MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients. Although well over 100 families of transporters have now been recognised and classified, the ABC superfamily and MFS account for nearly half of the solute transporters encoded within the genomes of microorganisms. They are also prevalent in higher organisms. The importance of these two families of transport systems to living organisms can therefore not be overestimated []. The MFS was originally believed to function primarily in the uptake of sugars but subsequent studies revealed that drug efflux systems, Krebs cycle metabolites, organophosphate:phosphate exchangers, oligosaccharide:H1 symport permeases, and bacterial aromatic acid permeases were all members of the MFS. These observations led to the probability that the MFS is far more widespread in nature and far more diverse in function than had been thought previously. 17 subgroups of the MFS have been identified []. Evidence suggests that the MFS permeases arose by a tandem intragenic duplication event in the early prokaryotes. This event generated a 2-transmembrane-spanner (TMS) protein topology from a primordial 6-TMS unit. Surprisingly, all currently recognised MFS permeases retain the two six-TMS units within a single polypeptide chain, although in 3 of the 17 MFS families, an additional two TMSs are found []. Moreover, the well-conserved MFS specific motif between TMS2 and TMS3 and the related but less well conserved motif between TMS8 and TMS9 [] prove to be a characteristic of virtually all of the more than 300 MFS proteins identified.; GO: 0022857 transmembrane transporter activity, 0055085 transmembrane transport, 0016021 integral to membrane

>KOG3762 consensus Predicted transporter [General function prediction only]

Probab=98.23  E-value=8.4e-07  Score=85.46  Aligned_cols=134  Identities=16%  Similarity=0.167  Sum_probs=121.4

Q ss_pred             ccchhhHHHHHHHHHHhhhhhhhccccCCCCchHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHhhccchhhHhhhhhh
Q 039541          117 ILSGLPSSCFFIGCLLGGLALSTLGDSSSLGRKKLLFLSCFAMSITALATIFANNIWIYSTIRFVAGFFRAPIMTSVIVL  196 (521)
Q Consensus       117 ~~~~~~~s~~~lg~~i~~~~~g~l~dr~~~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~  196 (521)
                      .+.|........|-++.-++.+++.+|  +|+-+++.+++.+..+=.+..++.+|.|+.+-.-+++|+..+..+.+..+|
T Consensus       406 ~LfGv~~a~~~~gEI~~~ffs~klI~k--iGHv~v~~lgLa~~~~Rf~~~S~L~n~W~vLPieilqgit~aliWaa~~sY  483 (618)
T KOG3762|consen  406 TLFGVVSALCHAGEILFYFFSFKLIEK--IGHVNVMYLGLACNVGRFLYYSYLQNPWMVLPIEILQGITHALIWAAIISY  483 (618)
T ss_pred             eeeeehhhhhccchHHHHHHHHHHHHH--hcccceeeehhhHHHHHHHHHHHhcCchheeeHHHHHHHHHHHHHHHHHHH
Confidence            566888888888999999999999999  999999999999999999999999999999999999999999999999999


Q ss_pred             eeeeecCcchhHHHHHHHH-HHHHHHHHHHHH-HHhhcCCchhHHHHHHHHHHHHHHh
Q 039541          197 LSEMVSKRWRGQVVIIGFT-FFSFGLVSLPAV-AYLSRGSSWKMLYVWTSIPSIVCCI  252 (521)
Q Consensus       197 i~~~~~~~~rg~~~~~~~~-~~~~G~~i~~~i-~~~~~~~~wr~~f~~~~~~~~~~~~  252 (521)
                      ++...||+-|..+.++++. ..++|--+|.++ |.+...++=|..|.+.++.+++.++
T Consensus       484 ~s~vaPp~l~at~Q~l~~g~f~GlG~g~GslIGG~~v~~fg~~ttf~~~giAcl~~l~  541 (618)
T KOG3762|consen  484 ASHVAPPGLRATAQGLLQGIFHGLGKGLGSLIGGFVVERFGARTTFRIFGIACLVTLA  541 (618)
T ss_pred             HHhhCCCcchHHHHHHHHHHhcccCcchhhhhhhhhheeehhHHHHHHHHHHHHHHHH
Confidence            9999999999999999764 557888888888 5677788999999998888887763

>PF05978 UNC-93: Ion channel regulatory protein UNC-93; InterPro: IPR010291 The proteins in this family are represented by UNC-93 from Caenorhabditis elegans

Probab=98.13  E-value=2e-05  Score=65.05  Aligned_cols=108  Identities=16%  Similarity=0.146  Sum_probs=92.8

Q ss_pred             hhhHHHHHHHHHHhhhhhhhccccCCCCchHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHhhccchhhHhhhhhheee
Q 039541          120 GLPSSCFFIGCLLGGLALSTLGDSSSLGRKKLLFLSCFAMSITALATIFANNIWIYSTIRFVAGFFRAPIMTSVIVLLSE  199 (521)
Q Consensus       120 ~~~~s~~~lg~~i~~~~~g~l~dr~~~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~  199 (521)
                      -.-.++.+....++.++.+.+.++  +|.|+.++++.+.+.+-.... +-++.+.++.+-.+.|++.+..+.....++.+
T Consensus        40 ~~slai~Y~~~~~s~l~~P~iv~~--lg~K~sm~lg~~~y~~y~~~~-~~~~~~~l~~~s~l~G~~~a~lW~aqg~ylt~  116 (156)
T PF05978_consen   40 YYSLAILYGSFAISCLFAPSIVNK--LGPKWSMILGSLGYAIYIASF-FYPNSYTLYPASALLGFGAALLWTAQGTYLTS  116 (156)
T ss_pred             HHHHHHHHHHHHHHHHhHHHHHHH--HhhHHHHHHHHHHHHHHHHHH-HhhhHHHHHHHHHHHhhhhHHhhHhhhHHHHH
Confidence            444566677788888999999999  999999999999988554443 56788899999999999999999999999999


Q ss_pred             eecCcchhHHHHHHHHHHHHHHHHHHHHHHh
Q 039541          200 MVSKRWRGQVVIIGFTFFSFGLVSLPAVAYL  230 (521)
Q Consensus       200 ~~~~~~rg~~~~~~~~~~~~G~~i~~~i~~~  230 (521)
                      ..+++.|++-.+++......+.++|.++..+
T Consensus       117 ~s~~~~~~~~~~ifw~i~~~s~i~G~~~~~~  147 (156)
T PF05978_consen  117 YSTEETIGRNTGIFWAIFQSSLIFGNLFLFF  147 (156)
T ss_pred             cCCHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999988888888888877544

UNC-93 colocalizes with SUP-10 and SUP-9 within muscle cells. Genetic studies suggest that these three proteins forms complex that coordinates muscle contraction. The function of UNC-93 is not known but is most likely an ion channel regulatory protein [].

>PF03219 TLC: TLC ATP/ADP transporter; InterPro: IPR004667 These proteins are members of the ATP:ADP Antiporter (AAA) family, which consists of nucleotide transporters that have 12 GES predicted transmembrane regions

Probab=98.13  E-value=0.0026  Score=63.23  Aligned_cols=284  Identities=16%  Similarity=0.208  Sum_probs=156.2

Q ss_pred             CCChhHHHHHHHHHHHHHHHHHHHhhhhccccCCcccccCCcccccCCccccccccCcceecCCCCcceeeecceeeCCc
Q 039541           36 NLGLPQFIQVILISLLLIFESQQTFISVYTDEEPTWHCINNTTTCSSSSDICTLSKSAWAWDRPSDTTIISDWSLECAGS  115 (521)
Q Consensus        36 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~p~~~c~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~i~~~~~~~~~~~  115 (521)
                      +..+..+.-++.+.+..++..+.....=..                                       ++.+=++....
T Consensus        17 pi~~~E~~k~~~l~~m~f~i~f~y~~lR~~---------------------------------------KD~lvvt~~ga   57 (491)
T PF03219_consen   17 PIHRSELKKFLPLALMFFFILFNYTILRDL---------------------------------------KDTLVVTAQGA   57 (491)
T ss_pred             cccHHHHHHHHHHHHHHHHHHHHHHHHHHh---------------------------------------cCeEEEecCCh
Confidence            445667777777777777777766554333                                       33333332222


Q ss_pred             cccchhhHHHHHH-HHHHhhhhhhhccccCCCCchHHHHHHHHHHHHHHHHHhcc---------cc--------------
Q 039541          116 SILSGLPSSCFFI-GCLLGGLALSTLGDSSSLGRKKLLFLSCFAMSITALATIFA---------NN--------------  171 (521)
Q Consensus       116 ~~~~~~~~s~~~l-g~~i~~~~~g~l~dr~~~Grr~~l~~~~~~~~~~~~~~~~~---------~~--------------  171 (521)
                       .....+-....+ +..+...+..++++|  ++|.+++.+....+.....+.++.         ++              
T Consensus        58 -e~I~flK~~~vlP~a~~f~~~y~kl~n~--~s~~~lFy~~~~~F~~fF~~f~~vlyP~~~~lhp~~~~~~~~~~~~~~~  134 (491)
T PF03219_consen   58 -EVIPFLKVWGVLPVAILFTILYSKLSNR--LSREKLFYIIIIPFLGFFALFAFVLYPNRDILHPDAFADKLLAILPPGF  134 (491)
T ss_pred             -hHHHHHHHHHHHHHHHHHHHHHHHHHhc--CCHHHHHHHHHHHHHHHHHHHHHHHhhchhhcCCCHHHHHhhhhccchH
Confidence             333555444444 445557778999999  999999887776666666655542         11              


Q ss_pred             --------HHHHHHHHHHhhccchhhHh-hhhhheeeeecCcchhHHHHHHHHHHHHHHHHHHHH-HHhhc---------
Q 039541          172 --------IWIYSTIRFVAGFFRAPIMT-SVIVLLSEMVSKRWRGQVVIIGFTFFSFGLVSLPAV-AYLSR---------  232 (521)
Q Consensus       172 --------~~~l~~~r~l~G~~~g~~~~-~~~~~i~~~~~~~~rg~~~~~~~~~~~~G~~i~~~i-~~~~~---------  232 (521)
                              .|...+..++.-+-.....+ .-..+..|.++.++-.|..++++.+.++|.+++..+ .++.+         
T Consensus       135 ~~~i~~~~~Wt~slfYv~aElwgsvvlSlLFW~fAN~itt~~eAKRfYpl~g~ganigli~sG~~~~~~~~~~~~~~~~~  214 (491)
T PF03219_consen  135 KGFIAMFRNWTFSLFYVMAELWGSVVLSLLFWGFANEITTVEEAKRFYPLFGLGANIGLIFSGQLTSYFSSFLRKSLPAG  214 (491)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccc
Confidence                    12222223333332233333 456788999999999999999999999999998766 44443         


Q ss_pred             CCchhHHHHHHH----HHHHHHHhhhceeeecchhHHHhcCCHHHHHHHHHHHhhhcCCCCCCCccccccCCCCCccccC
Q 039541          233 GSSWKMLYVWTS----IPSIVCCIIIYPFISESPRWLFIHGHEAEAMAVLKRLASRSNYQSDYGLESCCLSNMPPKAKNV  308 (521)
Q Consensus       233 ~~~wr~~f~~~~----~~~~~~~~~~~~~~~esp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  308 (521)
                      ...|........    +.+++.. .....+.+..   ..+++..                           +...+++++
T Consensus       215 ~~~~~~~l~~l~~~v~~~g~~i~-~~~~~~~~~v---l~~~~~~---------------------------~~~~~~kk~  263 (491)
T PF03219_consen  215 VDAWELSLNSLMGIVLILGIVII-LLYRYMNKNV---LTDPRFY---------------------------PSAKKKKKK  263 (491)
T ss_pred             cccHhHHHHHHHHHHHHHHHHHH-HHHHHHHHHc---cCccccc---------------------------hhhhccccc
Confidence            234654332222    1222222 2222221100   0000000                           000111222


Q ss_pred             CCcccccccHHHHhccHHHHHHHHHHHHHHHHHHHHHHhHHhhccCC-C----ccH--HHHHHHHHHHhHhHHHHHHHHH
Q 039541          309 IPKLDLYSSLKDLFNRKWALRRLLTIMALAFGIGVVYFGLLLGVGNL-S----FNI--YLSLAFNGLLDIPAYLLTFILI  381 (521)
Q Consensus       309 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~----~~~--~~~~~~~~~~~~~~~~~~g~l~  381 (521)
                      +++.+..++++.++++|.++...+....+....+...+..-...++. .    .+.  .......++..++..++++.+.
T Consensus       264 k~k~s~~es~k~l~kS~yL~~Ia~lvi~Ygi~inLvE~~wK~~lk~~~~~~~~ysafmG~~~~~tGivtii~~~l~~~ii  343 (491)
T PF03219_consen  264 KPKMSLKESFKLLLKSKYLLCIALLVIAYGISINLVEVVWKSQLKQLYPDPNDYSAFMGKFSSWTGIVTIIMMFLSSNII  343 (491)
T ss_pred             CCCccHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33334456788899999877777766666676666554432222211 1    111  1122334555566667889999


Q ss_pred             hhcCCchHHHH
Q 039541          382 ERWSRKSSILT  392 (521)
Q Consensus       382 dr~g~~~~~~~  392 (521)
                      +|+|-+....+
T Consensus       344 r~~GW~~~Ali  354 (491)
T PF03219_consen  344 RRFGWRTAALI  354 (491)
T ss_pred             HHhhHHHHHHH
Confidence            99997765544

One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers.; GO: 0005471 ATP:ADP antiporter activity, 0005524 ATP binding, 0006810 transport, 0016021 integral to membrane

>PF06813 Nodulin-like: Nodulin-like; InterPro: IPR010658 This entry represents a conserved region within plant nodulin-like proteins and a number of uncharacterised proteins

Probab=98.08  E-value=0.0001  Score=66.15  Aligned_cols=120  Identities=15%  Similarity=0.035  Sum_probs=80.9

Q ss_pred             HhhccCCCccHHHHHHH---HHHHhHhHHHHHHHHHhhcCCchHHHHHHHHHHHHHHHHHhcCCc-----hHHHHHHHHH
Q 039541          349 LLGVGNLSFNIYLSLAF---NGLLDIPAYLLTFILIERWSRKSSILTFCILSGTCSAICVAIGDE-----QEVLQIGLEL  420 (521)
Q Consensus       349 ~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~i~~~~~~~~~~~-----~~~~~~~~~~  420 (521)
                      |.+-+..+.+......+   ..++..+ +++.|.+.||+|.+.++.++.+...++...+......     +.|...+..+
T Consensus        26 ~~Lk~~l~~sq~~l~~l~~~~~~G~~~-G~~~G~l~d~~gp~~~l~iG~~~~~~GY~~~~l~~~~~i~~~~~~~~~~~~~  104 (250)
T PF06813_consen   26 PQLKSRLGYSQSQLNTLSTAGDIGSYF-GILAGLLYDRFGPWVVLLIGAVLGFVGYGLLWLAVSGRIPSLPVWLMCLFLF  104 (250)
T ss_pred             HHHHHHhCCCHHHHHHHHHHHHHHhhc-cHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHhCccCccchHHHHHHHH
Confidence            33344556655444333   3445444 4788999999999999999999999998877665322     1144444444


Q ss_pred             HHHHHHHHHHHHHHHhhccccCchhhhhhhHHHHHhhhhhhhHHHHHHHh
Q 039541          421 ASFFSACVAFNVLLVFGTELFTTCVRNSTTSLVRQAVNLGAAFSPVLISA  470 (521)
Q Consensus       421 ~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~p~~~~~  470 (521)
                      +.+.+.............+.||. +||++.|+.-....+++.+-..+...
T Consensus       105 l~~~s~~~~~ta~lvt~~~NFP~-~RG~vvgilk~~~GLSaai~t~i~~~  153 (250)
T PF06813_consen  105 LGGNSSCWFNTASLVTCVRNFPR-SRGTVVGILKGFFGLSAAIFTQIYSA  153 (250)
T ss_pred             HHcccHHHhhhHHHHHHHHhCcc-ccCceehhhhHHHHhHHHHHHHHHHH
Confidence            44454444445555666688885 79999999999998988877666643

>KOG1237 consensus H+/oligopeptide symporter [Amino acid transport and metabolism]

Probab=97.83  E-value=0.0017  Score=65.98  Aligned_cols=146  Identities=12%  Similarity=0.090  Sum_probs=109.5

Q ss_pred             CcceeeecceeeCCccccchhhHHHHHHHHHHhhhhhhhccccCCCCchHHHHHHHHHHHHHHHHHhcccc---------
Q 039541          101 DTTIISDWSLECAGSSILSGLPSSCFFIGCLLGGLALSTLGDSSSLGRKKLLFLSCFAMSITALATIFANN---------  171 (521)
Q Consensus       101 ~~~i~~~~~~~~~~~~~~~~~~~s~~~lg~~i~~~~~g~l~dr~~~Grr~~l~~~~~~~~~~~~~~~~~~~---------  171 (521)
                      +..+.++++.+..++    .-..+.+.-......+..++++|- .+||-+++.++.++..+|.++..++..         
T Consensus        61 v~ylt~~~~~~~~~a----a~~v~~f~G~~~~~~l~g~~laD~-f~gry~tI~~~s~i~~~G~~~lt~~a~~~~l~p~~~  135 (571)
T KOG1237|consen   61 VTYLTLELHASGGGA----ANNVNAFGGTQFLLPLLGAFLADS-FLGRYFTINIGSLISLLGLFGLTLSAMIPALLPFMC  135 (571)
T ss_pred             HHHHHHHhccchHHH----HHHHHHHhhHHHHHHHHHHHHHHH-HhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCccc
Confidence            345567777776555    666666666667777889999997 569999999999888888655433211         


Q ss_pred             ----------------HHHHHHHHHHhhccchhhHhhhhhheeeeec---C-cch--hHHHHHHHHHHHHHHHHHHHH-H
Q 039541          172 ----------------IWIYSTIRFVAGFFRAPIMTSVIVLLSEMVS---K-RWR--GQVVIIGFTFFSFGLVSLPAV-A  228 (521)
Q Consensus       172 ----------------~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~---~-~~r--g~~~~~~~~~~~~G~~i~~~i-~  228 (521)
                                      ...++.+.-+..+|.|+.-+...++-+|-++   + +++  ...+.++....++|..++..+ .
T Consensus       136 ~~~~~~~~c~~~s~~q~~~~~~~l~lia~G~gg~r~~~~~fGadQfd~~~~~~~~~~~~fFnW~yf~~~~g~l~a~t~~v  215 (571)
T KOG1237|consen  136 KFKPGGNVCESPSKLQLAVLYGALYLIALGAGGIRPCLLAFGADQFDELDPVEVKGIPSFFNWFYFSQNGGALLAQTVLV  215 (571)
T ss_pred             cCCCCCCcccCcchHHHHHHHHHHHHheeccCCCCCcchhhcccccCccCcchhhCcccchhHHHHHHHHHHHHHHHHHH
Confidence                            1366777788889999999999999999988   3 222  367788888889999988777 5


Q ss_pred             HhhcCCchhHHHHHHHHHHHHHH
Q 039541          229 YLSRGSSWKMLYVWTSIPSIVCC  251 (521)
Q Consensus       229 ~~~~~~~wr~~f~~~~~~~~~~~  251 (521)
                      +.=+..+|.+.|.+..+..++..
T Consensus       216 yiq~~~~w~lgf~i~~~~~~lai  238 (571)
T KOG1237|consen  216 YIQDNVGWKLGFGIPTVLNALAI  238 (571)
T ss_pred             hhhhcccceeeccHHHHHHHHHH
Confidence            55467899999988887766665

>KOG2816 consensus Predicted transporter ADD1 (major facilitator superfamily) [General function prediction only]

Probab=97.81  E-value=0.00021  Score=70.55  Aligned_cols=133  Identities=19%  Similarity=0.140  Sum_probs=98.9

Q ss_pred             HHHHhHhHHHHHHHHHhhcCCchHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHhhccccCchh
Q 039541          366 NGLLDIPAYLLTFILIERWSRKSSILTFCILSGTCSAICVAIGDEQEVLQIGLELASFFSACVAFNVLLVFGTELFTTCV  445 (521)
Q Consensus       366 ~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  445 (521)
                      .++..++.+...|.++||+|||..+......+.+..+.+.+..    ++..+ ..-...+.+..++...+++++....+.
T Consensus        71 ~~~~~~i~s~~iG~lSD~~grk~~L~~~~~~~~l~~~~~~~~~----~~~~~-~~~l~g~~~~~~s~~~a~vadis~~~~  145 (463)
T KOG2816|consen   71 AGLLTLISSPLIGALSDRYGRKVVLLLPLFGTILPALCLLFQG----YWFFL-LLGLSGGFSAIFSVGFAYVADISSEEE  145 (463)
T ss_pred             hHHHHHHHHhhhHHhhhhhhhhhhHHHHHHHHHHhHHHHHHHH----HHHhh-hcccccchhhhhhhhhhheeeccchhH
Confidence            4567778889999999999999999888887777776666543    23333 222223445667889999999999999


Q ss_pred             hhhhhHHHHHhhhhhhhHHHHHHHh--hccchhHHHHHHHHHHHHHhHh-hhccccCCCCC
Q 039541          446 RNSTTSLVRQAVNLGAAFSPVLISA--GRQNEFLSFGVFGLVVFCFGFF-VVFLPETIGVT  503 (521)
Q Consensus       446 r~~~~~~~~~~~~~g~~~~p~~~~~--~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~  503 (521)
                      |....|+.+.....+..++|.+.+.  ...+....+.+..+..+++.+. .+++||+...+
T Consensus       146 R~~~~gll~~~~~~~~~~~p~~~~~~~~~~~~a~~f~ia~~~~~~~~~y~~~~l~Esl~~~  206 (463)
T KOG2816|consen  146 RSSSIGLLSGTFGAGLVIGPALGGYLVKFLGIALVFLIAAASGILSLLYMLLFLPESLQEK  206 (463)
T ss_pred             HHHHHHHHHHHHHHHHhHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHhhccccccCcc
Confidence            9999999999999999999999986  3345666676666666666554 45677765544

>KOG2325 consensus Predicted transporter/transmembrane protein [General function prediction only]

Probab=97.76  E-value=0.00039  Score=67.99  Aligned_cols=141  Identities=13%  Similarity=0.102  Sum_probs=94.9

Q ss_pred             HHHHHHHHHHhHhHHHHHHHHHhhcCC-chHHHHHHHHHHHHHHHHHhcCCc-h-H-HHHHHHHHHHHHHHHHHHHHHHH
Q 039541          360 YLSLAFNGLLDIPAYLLTFILIERWSR-KSSILTFCILSGTCSAICVAIGDE-Q-E-VLQIGLELASFFSACVAFNVLLV  435 (521)
Q Consensus       360 ~~~~~~~~~~~~~~~~~~g~l~dr~g~-~~~~~~~~~~~~i~~~~~~~~~~~-~-~-~~~~~~~~~~~~~~~~~~~~~~~  435 (521)
                      +.......++..+++++.|+...|.+. |+.++.+.+++.++.+++...... + . ++.+++-++.|++.+ .....-.
T Consensus        74 G~viaa~slg~~i~~liF~~Ws~k~~~~k~Pli~s~ii~~~g~llY~~l~~~~~~~~y~mL~~R~l~Gvg~~-n~a~lR~  152 (488)
T KOG2325|consen   74 GLVIAASSLGHAIFSLIFGIWSNKTGSVKKPLIVSFLIAIIGNLLYLALAYVPNGVKYLMLVARILTGVGVG-NFAVLRA  152 (488)
T ss_pred             hHHHHHHHHHHHhcchhhcccccccCCcccCHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHcCcCcc-cHHHHHH
Confidence            344455668888899999999999885 788899999999998887433222 1 1 555666666666543 3578888


Q ss_pred             hhccccCchhhhhhhHHHHHhhhhhhhHHHHHH----Hhhc-----------cchhHHHHHHHHHHHHHhHh-hhccccC
Q 039541          436 FGTELFTTCVRNSTTSLVRQAVNLGAAFSPVLI----SAGR-----------QNEFLSFGVFGLVVFCFGFF-VVFLPET  499 (521)
Q Consensus       436 ~~~~~~~~~~r~~~~~~~~~~~~~g~~~~p~~~----~~~~-----------~~~~~~~~~~~~~~~~~~~~-~~~~~~~  499 (521)
                      ++++....+.|.++++..+....+|.++||.+.    ++..           .-+..+-++.+++.++..+. .++++|.
T Consensus       153 Y~a~~s~~~dR~rA~a~~~~~~vlg~ilGp~~q~~f~~Lg~~G~~i~~~~~~n~YTap~w~m~i~~i~~~v~i~~~f~E~  232 (488)
T KOG2325|consen  153 YIADASTVEDRPRAFAATSGGFVLGIILGPTIQLAFTPLGEKGFMILPGLIFNMYTAPAWLMAILWIIYIVIILFFFKEV  232 (488)
T ss_pred             HHHhccCccchHHHHHHhhhHHHHHHHHhHHHHHHHhhhcCCceEEcCcceEEecchHHHHHHHHHHHHHHHHHhheeec
Confidence            999988888889998888877777777777654    2211           12344555566666655554 4556654


Q ss_pred             CC
Q 039541          500 IG  501 (521)
Q Consensus       500 ~~  501 (521)
                      .+
T Consensus       233 ~~  234 (488)
T KOG2325|consen  233 YR  234 (488)
T ss_pred             cc
Confidence            43

>PF05631 DUF791: Protein of unknown function (DUF791); InterPro: IPR008509 This family consists of several eukaryotic proteins of unknown function

Probab=97.75  E-value=0.007  Score=56.63  Aligned_cols=146  Identities=15%  Similarity=0.078  Sum_probs=91.2

Q ss_pred             CCCccHHH---HHHHHHHHhHhHHHHHHHHHhhcCCchHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHH
Q 039541          354 NLSFNIYL---SLAFNGLLDIPAYLLTFILIERWSRKSSILTFCILSGTCSAICVAIGDEQEVLQIGLELASFFSACVAF  430 (521)
Q Consensus       354 ~~~~~~~~---~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  430 (521)
                      ++|.+...   ......+.+.+...+.|.++||+|||+..+...++.+++++.-.. ++.  ..+++.=++.|+.....+
T Consensus        63 ~yg~~~~qIa~Lf~~Gf~Ss~i~g~~~G~laD~~Grk~~cl~~cily~~scl~k~~-~~~--~~L~~GRvlgGiaTSLLf  139 (354)
T PF05631_consen   63 SYGFSEHQIAILFVAGFASSAIFGTFVGSLADRYGRKKACLLFCILYSLSCLTKHS-SNY--PVLLLGRVLGGIATSLLF  139 (354)
T ss_pred             HcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHhc-ccc--HHHHHHHHHHHHHHHHHH
Confidence            45554332   233334556677788899999999999999999988888864432 333  577777888888888888


Q ss_pred             HHHHHhhc-----cccCchhhhhhhHHHHH-hhhhhhh----HHHHHHHhhccchhHHHHHHHHHHHHHhHhhh-ccccC
Q 039541          431 NVLLVFGT-----ELFTTCVRNSTTSLVRQ-AVNLGAA----FSPVLISAGRQNEFLSFGVFGLVVFCFGFFVV-FLPET  499 (521)
Q Consensus       431 ~~~~~~~~-----~~~~~~~r~~~~~~~~~-~~~~g~~----~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~  499 (521)
                      +..-++..     .-+|++..+...+.... .+.+-++    ++..+......+...+|.....+.+++.++.. ..+|.
T Consensus       140 S~FEsW~V~Eh~~~g~~~~~L~~tF~~~tf~~n~~vAI~aGv~a~~l~~~~~~g~vaPF~~a~~~l~~~~~~I~~~W~EN  219 (354)
T PF05631_consen  140 SAFESWMVHEHNKRGFPQEWLSDTFSLATFFGNGVVAIGAGVVANVLADWFGFGPVAPFDAAIVLLAVAAVLILKTWPEN  219 (354)
T ss_pred             HHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHhHHHHHHHhHHHHHHHHHhCCCCcchHHHHHHHHHHHHHHHHhccccc
Confidence            75444432     23566666666654442 2223233    33344444444567788887777777666543 34555


Q ss_pred             CCC
Q 039541          500 IGV  502 (521)
Q Consensus       500 ~~~  502 (521)
                      .+.
T Consensus       220 yg~  222 (354)
T PF05631_consen  220 YGD  222 (354)
T ss_pred             CCC
Confidence            443

>KOG2563 consensus Permease of the major facilitator superfamily [General function prediction only]

Probab=97.64  E-value=0.0043  Score=59.39  Aligned_cols=108  Identities=13%  Similarity=0.067  Sum_probs=71.8

Q ss_pred             HHHHHHHHHHhHhHHHHHHHHHhhcCCchHHHHHHHHHHHHHHHHHhcCCc---hH-H--HHHHHHHHHHHHHHHHHHHH
Q 039541          360 YLSLAFNGLLDIPAYLLTFILIERWSRKSSILTFCILSGTCSAICVAIGDE---QE-V--LQIGLELASFFSACVAFNVL  433 (521)
Q Consensus       360 ~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~i~~~~~~~~~~~---~~-~--~~~~~~~~~~~~~~~~~~~~  433 (521)
                      .+...+..+..++..+.+.|+.||+|-|....++..+.+++..+=......   +. +  .......+.+...-......
T Consensus        82 ~wlsmIym~v~vp~gf~~mw~ldk~GLR~a~llgt~ln~iGa~Ir~iss~p~v~~~f~~~l~~~Gq~iaa~Aq~Fim~lP  161 (480)
T KOG2563|consen   82 DWLSMIYMVVSVPFGFAAMWILDKFGLRTALLLGTVLNGIGAWIRLISSLPFVPPLFRRPLTHTGQSIAAAAQPFILGLP  161 (480)
T ss_pred             HHHHHHHHHHHHHHhhHHHHhhcccchHHHHHHHHHHHHHHHHHhhhccCccccccchhhhhHHhHHHHHHhhhHhhccc
Confidence            455566777888888999999999999999999999999988765544322   11 2  22233333333222222233


Q ss_pred             HHhhccccCchhhhhhhHHHHHhhhhhhhHHHHH
Q 039541          434 LVFGTELFTTCVRNSTTSLVRQAVNLGAAFSPVL  467 (521)
Q Consensus       434 ~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~p~~  467 (521)
                      .-...--||+++|+++..+..+.+.+|.+++-++
T Consensus       162 skiA~~WF~~~qra~A~~~~v~~n~LGvavg~ll  195 (480)
T KOG2563|consen  162 SKIAAVWFPPDQRAIATVLGVMGNPLGVAVGFLL  195 (480)
T ss_pred             cHHHHhhCCcchhhhhhhHHHhcchHHHHHHhhc
Confidence            3344456899999999999888877776655433

>PF03092 BT1: BT1 family; InterPro: IPR004324 Members of this family are transmembrane proteins

Probab=97.40  E-value=0.0026  Score=63.15  Aligned_cols=150  Identities=14%  Similarity=0.111  Sum_probs=98.0

Q ss_pred             HhhccCCCccHHHHHHHHHHHhH--hHHHHHHHHHhhcC-----CchHHHHHHHHHHHHHHHHHhcCCchH--HHHHHHH
Q 039541          349 LLGVGNLSFNIYLSLAFNGLLDI--PAYLLTFILIERWS-----RKSSILTFCILSGTCSAICVAIGDEQE--VLQIGLE  419 (521)
Q Consensus       349 ~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~g~l~dr~g-----~~~~~~~~~~~~~i~~~~~~~~~~~~~--~~~~~~~  419 (521)
                      +++.++++.++........+..+  ...++.|.++|-+.     ||..++++.++..++.+.+...+....  ....+.+
T Consensus        14 ~~l~~~l~ls~~~~~~~~~~~~lPw~~Kp~~g~lsD~~pi~G~rr~~Y~~i~~~~~~~~~~~~~~~~~~~~s~~~~~~~l   93 (433)
T PF03092_consen   14 PFLKDDLGLSPAQLQRLSSLASLPWSIKPLYGLLSDSFPIFGYRRKPYMIIGWLLGAVSALVLALLPASESSAAIAVVLL   93 (433)
T ss_pred             HHHHHHcCCCHHHHHHHHHHHhCchHHhhhHHhhcccccccCCcchHHHHHHHHHHHHHHHHHHhcccccchhhhHHHHH
Confidence            34455577777666666655554  56689999999863     555666677777666666666555221  3445556


Q ss_pred             HHHHHHHHHHHHHHHHhhccccC--chhhhhhhHHHHHhhhhhhhHHHHHHHh--hccchhHHHHHHHHHHHHHhHhhhc
Q 039541          420 LASFFSACVAFNVLLVFGTELFT--TCVRNSTTSLVRQAVNLGAAFSPVLISA--GRQNEFLSFGVFGLVVFCFGFFVVF  495 (521)
Q Consensus       420 ~~~~~~~~~~~~~~~~~~~~~~~--~~~r~~~~~~~~~~~~~g~~~~p~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~  495 (521)
                      ++..++....-.+.-++..|...  ++.+|...+.......+|++++..+.|.  ...+....|.+.+++.++..+..++
T Consensus        94 ~la~~g~a~~DV~aDa~vvE~~~~~p~~~g~lqS~~~~~~~~G~lv~~~l~G~l~~~~~~~~~f~i~~~~~~l~~~~~~~  173 (433)
T PF03092_consen   94 FLASFGYAFADVAADALVVELARREPESRGDLQSFVWGVRSVGSLVGSLLSGPLLDSFGPQGVFLISAALPLLMLIVALF  173 (433)
T ss_pred             HHHHHHHHHHHHhhhHHHHHHhhcCCchhHHHHHHHHHHHHHHHHHHHHhhhhhhhcCCCeEEehHHHHHHHHHHHHHHH
Confidence            66667777777777777777762  2237788888888889999999888875  3334555666666666555544443


Q ss_pred             c-cc
Q 039541          496 L-PE  498 (521)
Q Consensus       496 ~-~~  498 (521)
                      + +|
T Consensus       174 ~~~e  177 (433)
T PF03092_consen  174 LLEE  177 (433)
T ss_pred             hhhh
Confidence            3 44

Several are Leishmania putative proteins that are thought to be pteridine transporters [, ]. This family also contains five putative Arabidopsis thaliana proteins of unknown function as well as two predicted prokaryotic proteins (from the cyanobacteria Synechocystis and Synechococcus).

>TIGR00926 2A1704 Peptide:H+ symporter (also transports b-lactam antibiotics, the antitumor agent, bestatin, and various protease inhibitors)

Probab=97.37  E-value=0.0044  Score=64.32  Aligned_cols=126  Identities=17%  Similarity=0.117  Sum_probs=89.9

Q ss_pred             hHhHHHHHHHHHhh-cCCchHHHHHHHHHHHHHHHHHhcCCch------HHHHHHHHHHHHHHHHHHHHHHHHhhccccC
Q 039541          370 DIPAYLLTFILIER-WSRKSSILTFCILSGTCSAICVAIGDEQ------EVLQIGLELASFFSACVAFNVLLVFGTELFT  442 (521)
Q Consensus       370 ~~~~~~~~g~l~dr-~g~~~~~~~~~~~~~i~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  442 (521)
                      .-+..+++|+++|+ +|+++.+.++.++..++..++.+.....      ....++.+.+...|.++.-+...+...|.++
T Consensus        36 ~yl~pilGg~iAD~~lG~~~tIl~~~ii~~lG~~llai~a~~~~~~~~~~~~~l~gLaLia~G~GgiKp~vsaf~gdqf~  115 (654)
T TIGR00926        36 CYLTPLIGAIIADGWLGKFKTILYLSIVYVVGHALLSFGAIPSSGHPLHDLLDLLGLALIALGTGGIKPCVSAFGGDQFE  115 (654)
T ss_pred             HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhccCcccccchHHHHHHHHHHHHHhhccccccCchhhhHhhcC
Confidence            33566788999997 6999999999999888887776542210      1234556666777777777888888888887


Q ss_pred             ch---hhhhhhHHHHHhhhhhhhHHHHHHHhhc---------cchhHHHHHHHHHHHHHhHhhhc
Q 039541          443 TC---VRNSTTSLVRQAVNLGAAFSPVLISAGR---------QNEFLSFGVFGLVVFCFGFFVVF  495 (521)
Q Consensus       443 ~~---~r~~~~~~~~~~~~~g~~~~p~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~  495 (521)
                      ++   .|.....+.....++|+++++.+..+..         .++...|.+.+++.+++.++...
T Consensus       116 ~~~~~~~~s~F~~fY~~iNiGSlis~~i~~~l~~~~~~fg~~~~~~~aF~i~~i~m~ia~lvf~~  180 (654)
T TIGR00926       116 ERQLSLRSRFFSFFYFAINAGSLISTIITPILRGDVGCFGCQDCYPLAFGVPAILMILALIVFMA  180 (654)
T ss_pred             ccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCcchHHHHHHHHHHHHHHHHHHHH
Confidence            54   3667778888888999998888876532         13666777777777776665443

>PF12832 MFS_1_like: MFS_1 like family

Probab=97.37  E-value=0.00024  Score=50.84  Aligned_cols=53  Identities=19%  Similarity=0.227  Sum_probs=45.9

Q ss_pred             CcceeeecceeeCCccccchhhHHHHHHHHHHhhhhhhhccccCCCCchHHHHHHHHHH
Q 039541          101 DTTIISDWSLECAGSSILSGLPSSCFFIGCLLGGLALSTLGDSSSLGRKKLLFLSCFAM  159 (521)
Q Consensus       101 ~~~i~~~~~~~~~~~~~~~~~~~s~~~lg~~i~~~~~g~l~dr~~~Grr~~l~~~~~~~  159 (521)
                      +|...++.|++..+.    |.+.++..+...++.+++|.++||  +|+++..+....+.
T Consensus        23 l~~~~~~~Gl~~~~i----Gil~~i~~~~~~~~~pl~g~laDk--~~~~~~~l~~~~~~   75 (77)
T PF12832_consen   23 LPLYLKQLGLSPSQI----GILSAIRPLIRFLAPPLWGFLADK--FGKRKVILLGSLFM   75 (77)
T ss_pred             hhHhhhhcCCCHHHH----HHHHHHHHHHHHHHHHHHHHHHHH--HCccHHHHHHHHHH
Confidence            566677899999666    999999999999999999999999  99998887766543

>PF05978 UNC-93: Ion channel regulatory protein UNC-93; InterPro: IPR010291 The proteins in this family are represented by UNC-93 from Caenorhabditis elegans

Probab=97.36  E-value=0.0069  Score=50.08  Aligned_cols=102  Identities=10%  Similarity=-0.049  Sum_probs=81.0

Q ss_pred             HHHHHhHhHHHHHHHHHhhcCCchHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHhhccccCch
Q 039541          365 FNGLLDIPAYLLTFILIERWSRKSSILTFCILSGTCSAICVAIGDEQEVLQIGLELASFFSACVAFNVLLVFGTELFTTC  444 (521)
Q Consensus       365 ~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  444 (521)
                      +.-....++.++.+.+.+++|.|+.++++.+...+-...... +..  +..+...++.|++.+..+...-.++.+...++
T Consensus        45 i~Y~~~~~s~l~~P~iv~~lg~K~sm~lg~~~y~~y~~~~~~-~~~--~~l~~~s~l~G~~~a~lW~aqg~ylt~~s~~~  121 (156)
T PF05978_consen   45 ILYGSFAISCLFAPSIVNKLGPKWSMILGSLGYAIYIASFFY-PNS--YTLYPASALLGFGAALLWTAQGTYLTSYSTEE  121 (156)
T ss_pred             HHHHHHHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHh-hhH--HHHHHHHHHHhhhhHHhhHhhhHHHHHcCCHH
Confidence            333445567788899999999999999998887766554432 222  67788889999999999999999999999999


Q ss_pred             hhhhhhHHHHHhhhhhhhHHHHHHH
Q 039541          445 VRNSTTSLVRQAVNLGAAFSPVLIS  469 (521)
Q Consensus       445 ~r~~~~~~~~~~~~~g~~~~p~~~~  469 (521)
                      .+++..++.......+.++|.++.-
T Consensus       122 ~~~~~~~ifw~i~~~s~i~G~~~~~  146 (156)
T PF05978_consen  122 TIGRNTGIFWAIFQSSLIFGNLFLF  146 (156)
T ss_pred             HHhhHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999988888877777766553

UNC-93 colocalizes with SUP-10 and SUP-9 within muscle cells. Genetic studies suggest that these three proteins forms complex that coordinates muscle contraction. The function of UNC-93 is not known but is most likely an ion channel regulatory protein [].

>PF00854 PTR2: POT family; InterPro: IPR000109 This entry represents the POT (proton-dependent oligopeptide transport) family, which all appear to be proton dependent transporters

Probab=97.32  E-value=0.00072  Score=65.88  Aligned_cols=104  Identities=10%  Similarity=0.146  Sum_probs=85.1

Q ss_pred             HHHHHHHHHHHHHHHHHhcc---cc------HHHHHHHHHHhhccchhhHhhhhhheeeeecCc---chhHHHHHHHHHH
Q 039541          150 KLLFLSCFAMSITALATIFA---NN------IWIYSTIRFVAGFFRAPIMTSVIVLLSEMVSKR---WRGQVVIIGFTFF  217 (521)
Q Consensus       150 ~~l~~~~~~~~~~~~~~~~~---~~------~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~---~rg~~~~~~~~~~  217 (521)
                      |+++++.+++.+|.++..++   .+      .+.++++-++.++|.|+.=+...++++|-++++   +|.+.+.++..+.
T Consensus         2 ktI~~g~~~~~~G~~ll~l~~~~~~~~~~~~~~~~~~gL~lia~G~G~~K~ni~~~~~dq~~~~~~~~~~~~F~~fY~~i   81 (372)
T PF00854_consen    2 KTILLGSIVYLLGHVLLTLSAIPPSLPSGIQLGLFYIGLALIAVGTGGIKPNISPFGADQYDEDDDSRRDSFFNWFYWGI   81 (372)
T ss_dssp             HHHHHHHHHHHHHHHH--HHHTSSSC------CHHHHHHHHHHHHHHCCHHHHHHHHHHCSSTTTTTHHHHHHHHHHHHH
T ss_pred             HhhhHHHHHHHHHHHHhHHHHhcchhhhhHHHHHHHHHHHHHHhccccccccHHHHHHHHhcccchhhhhhhHHHHHHHH
Confidence            56788888899998884443   22      368899999999999999999999999999765   4677888899999


Q ss_pred             HHHHHHHHHH-HHhhcCCchhHHHHHHHHHHHHHHhh
Q 039541          218 SFGLVSLPAV-AYLSRGSSWKMLYVWTSIPSIVCCII  253 (521)
Q Consensus       218 ~~G~~i~~~i-~~~~~~~~wr~~f~~~~~~~~~~~~~  253 (521)
                      ++|..+++.+ +++-++.+|.+.|.+.++..++..+.
T Consensus        82 n~G~~~~~~~~~~i~~~~~~~~~f~i~~~~~~~~~~~  118 (372)
T PF00854_consen   82 NIGSLFSPTLVPYIQQNYGWFLGFGIPAIGMLLALIV  118 (372)
T ss_dssp             HHHHHHHHHCCCHHHHCS-HHHHHHHHHHHHHHHHHH
T ss_pred             hhhhHhhcccchhhccccchhhhhhHHHHHHHHHHHH
Confidence            9999999888 78888899999999998887777633

The transport of peptides into cells is a well-documented biological phenomenon which is accomplished by specific, energy-dependent transporters found in a number of organisms as diverse as bacteria and humans. The POT family of proteins is distinct from the ABC-type peptide transporters and was uncovered by sequence analyses of a number of recently discovered peptide transport proteins []. These proteins that seem to be mainly involved in the intake of small peptides with the concomitant uptake of a proton []. These integral membrane proteins are predicted to comprise twelve transmembrane regions.; GO: 0005215 transporter activity, 0006857 oligopeptide transport, 0016020 membrane; PDB: 4APS_A 2XUT_C.

>TIGR00769 AAA ADP/ATP carrier protein family

Probab=97.29  E-value=0.056  Score=53.67  Aligned_cols=142  Identities=13%  Similarity=0.012  Sum_probs=86.8

Q ss_pred             HHHHHHHHHHHHHHHHHHhHHhhccCCCc-----cHHHHH---HHHHHH-hHhHHHHHHHHHhhcCCchHHHHHHHHHHH
Q 039541          329 RRLLTIMALAFGIGVVYFGLLLGVGNLSF-----NIYLSL---AFNGLL-DIPAYLLTFILIERWSRKSSILTFCILSGT  399 (521)
Q Consensus       329 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~---~~~~~~-~~~~~~~~g~l~dr~g~~~~~~~~~~~~~i  399 (521)
                      +.++...+..++..+.|+.+-..-+....     ++....   ....+. .++..++-+++++|++|+++.-+.......
T Consensus         7 ~k~~~~~l~fF~il~~Y~iLR~lKD~lvv~~~~~gae~i~fLk~~~~lp~~~~~~~ly~~l~~~~~~~~lf~~~~~~F~~   86 (472)
T TIGR00769         7 KKFLPLFLMFFCILFNYTILRDTKDTLVVTAKGSGAEIIPFLKTWVVVPMAVIFMLIYTKLSNILSKEALFYTVISPFLG   86 (472)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhhheeecccCCchhhHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHhHHHHHHHHHH
Confidence            34555556666667777766443332211     111111   111122 233367789999999999987765555555


Q ss_pred             HHHHHHhc--CC--c-------------------------hHHHHHHHHHHHHHHHHHHHH-HHHHhhccccCchhhhhh
Q 039541          400 CSAICVAI--GD--E-------------------------QEVLQIGLELASFFSACVAFN-VLLVFGTELFTTCVRNST  449 (521)
Q Consensus       400 ~~~~~~~~--~~--~-------------------------~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~r~~~  449 (521)
                      .+.++.+.  +.  .                         ..|...+..+..........+ +.|.+++|.+..++-.+-
T Consensus        87 ~f~lF~~vl~p~~~~~~p~~~~~~~~~~~~~~~~~~i~~~~~W~~~~FYv~~elw~~~vvS~lFW~fandi~t~~qakRf  166 (472)
T TIGR00769        87 FFALFAFVIYPLSDLLHPTALADKLLSLLPPGFMGFIAILRIWSFALFYVMAELWGSVVLSLLFWGFANQITTIDEAKRF  166 (472)
T ss_pred             HHHHHHHHHhcchhhcCCcHHHHHHHhhcchhhHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHH
Confidence            44444433  11  0                         012222333344444445555 889999999999999999


Q ss_pred             hHHHHHhhhhhhhHHHHHHHh
Q 039541          450 TSLVRQAVNLGAAFSPVLISA  470 (521)
Q Consensus       450 ~~~~~~~~~~g~~~~p~~~~~  470 (521)
                      .++....+++|.++++.+..+
T Consensus       167 y~l~~~ganlg~i~sg~~~~~  187 (472)
T TIGR00769       167 YALFGLGANVALIFSGRTIKY  187 (472)
T ss_pred             HHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999988764

These proteins are members of the ATP:ADP Antiporter (AAA) Family (TC 2.A.12), which consists of nucleotide transporters that have 12 GES predicted transmembrane regions. One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers.

>PF02487 CLN3: CLN3 protein; InterPro: IPR003492 Batten's disease, the juvenile variant of neuronal ceroid lipofuscionosis (NCL), is a recessively inherited disorder affecting children of 5-10 years of age

Probab=97.28  E-value=0.0039  Score=59.83  Aligned_cols=107  Identities=16%  Similarity=0.173  Sum_probs=79.1

Q ss_pred             hhhHHHHHHHHHHhhhhhhhccccCCCCchHHHHHHHHHHH-----HHHHHHhccccHHHHHHHHHHhhccchhhHhhhh
Q 039541          120 GLPSSCFFIGCLLGGLALSTLGDSSSLGRKKLLFLSCFAMS-----ITALATIFANNIWIYSTIRFVAGFFRAPIMTSVI  194 (521)
Q Consensus       120 ~~~~s~~~lg~~i~~~~~g~l~dr~~~Grr~~l~~~~~~~~-----~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~  194 (521)
                      .+....|.+|-.++.--...+  |  +  |++.+.+.+-..     +.....-+.++.|.+++.-+..|+..|..++...
T Consensus       284 ~~Y~~~YQ~GVFISRSS~~~~--r--i--r~lwils~LQ~~nl~~~~l~s~~~fipsi~ivf~lif~eGLlGGa~YVNtF  357 (402)
T PF02487_consen  284 RWYQLLYQLGVFISRSSLPFF--R--I--RRLWILSLLQVINLVFLLLQSWYRFIPSIWIVFVLIFYEGLLGGASYVNTF  357 (402)
T ss_pred             HHHHHHHHHHHhhhhcceeee--e--h--hhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhhhHHHHHHH
Confidence            677777777766664432221  3  4  334333332222     2222233458899999999999999999999999


Q ss_pred             hheeeeecCcchhHHHHHHHHHHHHHHHHHHHHHHhhc
Q 039541          195 VLLSEMVSKRWRGQVVIIGFTFFSFGLVSLPAVAYLSR  232 (521)
Q Consensus       195 ~~i~~~~~~~~rg~~~~~~~~~~~~G~~i~~~i~~~~~  232 (521)
                      ..+.|-.++++|..+++....+-++|..++.+++..++
T Consensus       358 ~~I~~~~~~~~REFslg~vsvsds~GI~lAgll~l~le  395 (402)
T PF02487_consen  358 YRISEEVPPEDREFSLGAVSVSDSLGILLAGLLGLPLE  395 (402)
T ss_pred             HHHHhcCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999987654

The disease is characterised by progressive loss of vision, seizures and psychomotor disturbances. Biochemically, the disease is characterised by lysosomal accumulation of hydrophobic material, mainly ATP synthase subunit C, largely in the brain but also in other tissues. The disease is fatal within a decade []. Mutations in the CLN3 gene are believed to cause Batten's disease []. The CLN3 gene, with a predicted 438-residue product, maps to chromosome p16p12.1. The gene contains at least 15 exons spanning 15kb and is highly conserved in mammals []. A 1.02kb deletion in the CLN3 gene, occurring in either one or both alleles, is found in 85% of Batten disease chromosomes causing a frameshift generating a predicted translated product of 181 amino acid residues [, ]. 22 other mutations, including deletions, insertions and point mutations, have been reported. It has been suggested that such mutations result in severely truncated CLN3 proteins, or affect its structure/conformation [, ]. CLN3 proteins, which are believed to associate in complexes, are heavily glycosylated lysosomal membrane proteins [], containing complex Asn-linked oligosaccharides []. Extensive glycosylation is important for the stability of these lysosomal proteins in the highly hydrolytic lysosomal lumen. Lysosomal sequestration of active lysosomal enzymes, transport of degraded molecules from the lysosomes, and fusion and fission between lysosomes and other organelles. The CLN3 protein is a 43kDa, highly hydrophobic, multi-transmembrane (TM), phosphorylated protein []. Hydrophobicity analysis predicts 6-9 TM segments, suggesting that CLN3 is a TM protein that may function as a chaperone or signal transducer. The majority of putative phosphorylation sites are found in the N-terminal domain, encompassing 150 residues []. Phosphorylation is believed to be important for membrane compartment interaction, in the formation of functional complexes, and in regulation and interactions with other proteins []. CLN3 contains several motifs that may undergo lipid post-translational modifications (PTMs). PTMs contribute to targeting and anchoring of modified proteins to distinct biological membranes []. There are three general classes of lipid modification: N-terminal myristoylation, C-terminal prenylation, and palmitoylation of cysteine residues. Such modifications are believed to be a common form of PTM occurring in 0.5% of all cellular proteins, including brain tissue []. The C terminus of the CLN3 contains various lipid modification sites: C435, target for prenylation; G419, target for myristoylation; and C414, target for palmitoylation []. Prenylation results in protein hydrophobicity, influences interaction with upstream regulatory proteins and downstream effectors, facilitates protein-protein interaction (multisubunit assembly) and promotes anchoring to membrane lipids. The prenylation motif, Cys-A-A-X, is highly conserved within CLN3 protein sequences of different species []. Species with known CLN3 protein homologues include: Homo sapiens, Canis familiaris, Mus musculus, Saccharomyces cerevisiae and Drosophila melanogaster.; GO: 0016020 membrane

>KOG1479 consensus Nucleoside transporter [Nucleotide transport and metabolism]

Probab=97.26  E-value=0.015  Score=55.49  Aligned_cols=56  Identities=13%  Similarity=0.052  Sum_probs=42.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhccccCchhhhhhhHHHHHhhhhhhhHHHHHH
Q 039541          413 VLQIGLELASFFSACVAFNVLLVFGTELFTTCVRNSTTSLVRQAVNLGAAFSPVLI  468 (521)
Q Consensus       413 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~p~~~  468 (521)
                      ++......++++..|-..+....++++..|++++..+-.+...+...|-+.|..+.
T Consensus       344 ~~~~~l~~~lglsnGYltsl~m~~aPk~v~~~e~e~aG~~m~~fl~~Gl~~G~~~s  399 (406)
T KOG1479|consen  344 GWFIFLMSLLGLSNGYLTSLIMMYAPKQVKPSEKEAAGNLMVFFLVGGLALGSLLS  399 (406)
T ss_pred             hHHHHHHHHHHhccchHhhheehhcCCCCChHHHHHHHHHHHHHHHHHHHHhhHHH
Confidence            67788888899988888889999999999998866666666655555555554443

>PF01733 Nucleoside_tran: Nucleoside transporter; InterPro: IPR002259 Delayed-early response (DER) gene products include growth progression factors and several unknown products of novel cDNAs

Probab=97.09  E-value=0.00015  Score=68.29  Aligned_cols=107  Identities=12%  Similarity=0.030  Sum_probs=3.7

Q ss_pred             HHHHHHHHhHhHHHHHHHHHhhcCCchHHHHHHHHHHHHHHHHHhc--C-C--------chHHHHHHHHHHHHHHHHHHH
Q 039541          362 SLAFNGLLDIPAYLLTFILIERWSRKSSILTFCILSGTCSAICVAI--G-D--------EQEVLQIGLELASFFSACVAF  430 (521)
Q Consensus       362 ~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~i~~~~~~~~--~-~--------~~~~~~~~~~~~~~~~~~~~~  430 (521)
                      ......++.++|+.+..+..-+..+++.+.+..+.-.+...++.+.  . .        .+.++.++.++++++..|-..
T Consensus       187 ~fl~Fn~gD~iGR~l~~~~~~~~~~~~~l~~~s~~R~~fiPlf~~cn~~p~~~~~~~~~~~d~~~~i~~~l~g~TNGyl~  266 (309)
T PF01733_consen  187 LFLLFNLGDFIGRFLASWPRWPGPSPRWLWILSLLRFLFIPLFLLCNVQPRPRYLPVLFNSDAWFIILMLLFGFTNGYLS  266 (309)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HHHHHHHHHHhcchhcceeEecccccccHHHHHHHHHHHHHHHHHHHhhcccccCCCcccchHHHHHHHHHHHHccchhh
Confidence            3455678888999888775322113333333333222222222222  1 0        011566778888899988888


Q ss_pred             HHHHHhhccccCchhhhhhhHHHHHhhhhhhhHHHHHH
Q 039541          431 NVLLVFGTELFTTCVRNSTTSLVRQAVNLGAAFSPVLI  468 (521)
Q Consensus       431 ~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~p~~~  468 (521)
                      +....+.++..++++|..+-.+......+|-.+|..+.
T Consensus       267 tl~m~~~p~~v~~~e~e~aG~~~~~~L~~Gl~~Gs~ls  304 (309)
T PF01733_consen  267 TLAMMYAPKSVSPEERELAGSVMSFFLSFGLFIGSVLS  304 (309)
T ss_dssp             HHHH----------------------------------
T ss_pred             hceeeeCCCcCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999998888888777777777766665543

Murine and human cDNAs from one novel DER gene (DER12) have been characterised to identify its product and to examine its role in the growth response []. Both sequences encode a hydrophobic 36kDa protein that is predicted to contain 8 transmembrane (TM) domains. The protein has been localised to the nucleolus, where its concentration increases following mitogen stimulation []. Although the function of the protein is unknown, its identification as a nucleolar gene transcriptionally activated by growth factors implicates it as participating in the proliferative response []. Sequence analysis reveals the protein to share a high degree of similarity with the C-terminal portion of equilibrative nucleoside transporters. These proteins are integral membrane proteins which enable the movement of hydrophilic nucleosides and nucleoside analogs down their concentration gradients across cell membranes. ENT family members have been identified in humans, mice, fish, tunicates, slime molds, and bacteria []. ; GO: 0005337 nucleoside transmembrane transporter activity, 0006810 transport, 0016020 membrane; PDB: 1HXI_A.

>KOG3880 consensus Predicted small molecule transporter involved in cellular pH homeostasis (Batten disease protein in human) [General function prediction only]

Probab=96.94  E-value=0.011  Score=53.44  Aligned_cols=135  Identities=11%  Similarity=-0.021  Sum_probs=84.6

Q ss_pred             hhhHHHHHHHHHHhhhhhhhccccCCCCchHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHhhccchhhHhhhhhheee
Q 039541          120 GLPSSCFFIGCLLGGLALSTLGDSSSLGRKKLLFLSCFAMSITALATIFANNIWIYSTIRFVAGFFRAPIMTSVIVLLSE  199 (521)
Q Consensus       120 ~~~~s~~~lg~~i~~~~~g~l~dr~~~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~  199 (521)
                      |.+.-+-.+...+-.+.+....||.+||.|.  .+..++.+.+.++.+++++.++-+++-.+..++.|.....-.++-+.
T Consensus        65 g~VLLaDilPsL~iKl~~Pff~~rfpf~~Ri--~~~v~~sa~s~~lVafs~s~~~sL~GV~~aSissGlGEiTFL~lss~  142 (409)
T KOG3880|consen   65 GAVLLADILPSLAIKLTAPFFIHRFPFGFRI--ALVVLLSALSFFLVAFSNSVPMSLLGVVFASISSGLGEITFLALSSR  142 (409)
T ss_pred             chhhhhhhhHHHHHHHhchhhhhhcccchHH--HHHHHHHhcceEEEEeccchhHHHhhhhhhhhcCCcceeehhhhhcc
Confidence            4444444566666667777788884566665  44556778889999999999999999999888888665555444433


Q ss_pred             eecCcchhHHHHHHHHHHHHHHHHHHHH-HHhhc--CCchhHHHHHHHHHHHHHHhhhceeeecc
Q 039541          200 MVSKRWRGQVVIIGFTFFSFGLVSLPAV-AYLSR--GSSWKMLYVWTSIPSIVCCIIIYPFISES  261 (521)
Q Consensus       200 ~~~~~~rg~~~~~~~~~~~~G~~i~~~i-~~~~~--~~~wr~~f~~~~~~~~~~~~~~~~~~~es  261 (521)
                      + +    ....+.+..+.+.+.++|..- +.+.+  +.+-|...++...+-++.++..++.++++
T Consensus       143 Y-~----~~~i~~WSSGTGgAGliGa~SYa~lT~~~~~spk~Tlli~l~lP~lfa~~yf~lL~~p  202 (409)
T KOG3880|consen  143 Y-P----SIVIAGWSSGTGGAGLIGASSYAFLTSWANLSPKSTLLIMLFLPALFAFAYFFLLKSP  202 (409)
T ss_pred             C-C----CceeccccCCCCcchhhhhhHHHHHhhhcCCChhhHHHHHHHHHHHHHHHHHheeCCC
Confidence            2 2    223334444555555555444 33333  34567777777766666663555555543

>KOG3098 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.90  E-value=0.014  Score=57.10  Aligned_cols=107  Identities=21%  Similarity=0.203  Sum_probs=83.0

Q ss_pred             hhhHHHHHHHHHHhhhhhhhccccC-CCCchHHHHHHHHHHHHHHHHHhcc------------------ccHHHHHHHHH
Q 039541          120 GLPSSCFFIGCLLGGLALSTLGDSS-SLGRKKLLFLSCFAMSITALATIFA------------------NNIWIYSTIRF  180 (521)
Q Consensus       120 ~~~~s~~~lg~~i~~~~~g~l~dr~-~~Grr~~l~~~~~~~~~~~~~~~~~------------------~~~~~l~~~r~  180 (521)
                      ++..-...+|..++..+.+.+.+|. ++||++.+.++..+..++.++.-..                  +++...++.-+
T Consensus       282 ai~~~~~g~g~v~~g~~~~~l~~rir~fg~~~~~~~~~~~~~~~~~li~l~~p~dap~~~t~~~~~~~~~~~~~~~ii~~  361 (461)
T KOG3098|consen  282 AIYSIGIGLGEVIGGLDFSILSKRIRGFGRKPTVLIGIIIHLIGFLLIHLSFPNDAPLRPTDSPPLLFTPSYYLALIIGF  361 (461)
T ss_pred             HHHHHHHhHHHHHHHHHHHHHhhhhhhcccCcchhHHHHHHHHHHHHHhccccccCCCCCCcccccccccchhHHHHHHH
Confidence            4444444455555666677777765 6999999999999998888887553                  24667788889


Q ss_pred             HhhccchhhHhhhhhheeeeecCcchhHHHHHHHHHHHHHHHHHHHH
Q 039541          181 VAGFFRAPIMTSVIVLLSEMVSKRWRGQVVIIGFTFFSFGLVSLPAV  227 (521)
Q Consensus       181 l~G~~~g~~~~~~~~~i~~~~~~~~rg~~~~~~~~~~~~G~~i~~~i  227 (521)
                      +.|++-+......+.++.+.. +++|..+.++...-..++..++...
T Consensus       362 l~G~~D~~~~t~~~~ii~~~~-~~~~~~~fsi~kfyq~~~s~v~~f~  407 (461)
T KOG3098|consen  362 LLGFGDACFNTQRYVIIALLY-PDDRAQAFSLFKFYQSVASCVAFFF  407 (461)
T ss_pred             HHhhHHHHHHHHHHHHHHHHh-cCchHHHHHHHHHHHHHHHHHHhhh
Confidence            999999999999999999999 5889999998888888777765544

>PF12832 MFS_1_like: MFS_1 like family

Probab=96.83  E-value=0.012  Score=42.06  Aligned_cols=63  Identities=17%  Similarity=0.142  Sum_probs=46.0

Q ss_pred             HHHHHHHHHHHHhHHhhccCCCccHHHHHHHHH---HHhHhHHHHHHHHHhhcCCchHHHHHHHHH
Q 039541          335 MALAFGIGVVYFGLLLGVGNLSFNIYLSLAFNG---LLDIPAYLLTFILIERWSRKSSILTFCILS  397 (521)
Q Consensus       335 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~  397 (521)
                      ++.+.+.+..+-+.+.++++.|.+....+.+.+   +..+++.++.|+++||+++++.......++
T Consensus        10 f~~f~~~g~~~Pfl~~~~~~~Gl~~~~iGil~~i~~~~~~~~~pl~g~laDk~~~~~~~l~~~~~~   75 (77)
T PF12832_consen   10 FFYFAALGCLYPFLPLYLKQLGLSPSQIGILSAIRPLIRFLAPPLWGFLADKFGKRKVILLGSLFM   75 (77)
T ss_pred             HHHHHHHHHHHhhhhHhhhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCccHHHHHHHHHH
Confidence            334444455555678888888988877765554   566789999999999999998877665543

>PF06963 FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 This entry represents the solute carrier family 40 member 1 family of proteins, also known as Ferroportin 1

Probab=96.78  E-value=0.0085  Score=58.60  Aligned_cols=121  Identities=12%  Similarity=-0.038  Sum_probs=91.6

Q ss_pred             eecceeeCCccccchhhHHHHHHHHHHhhhhhhhccccCCCCchHHHHHHHHHHHHHHHHHh------ccc----cHHHH
Q 039541          106 SDWSLECAGSSILSGLPSSCFFIGCLLGGLALSTLGDSSSLGRKKLLFLSCFAMSITALATI------FAN----NIWIY  175 (521)
Q Consensus       106 ~~~~~~~~~~~~~~~~~~s~~~lg~~i~~~~~g~l~dr~~~Grr~~l~~~~~~~~~~~~~~~------~~~----~~~~l  175 (521)
                      ..-|+++..    +|..-+...+....+.+...++.+|  +|..+.=++++.....+..++.      -++    +...+
T Consensus       286 ~~~G~s~~~----igi~R~~gav~Gl~gT~~~p~l~~r--iGlvr~G~~~l~~q~~~L~~~v~~~~~~~~~~~~~s~~~l  359 (432)
T PF06963_consen  286 KSQGYSPSV----IGIFRGLGAVFGLLGTWVYPWLMKR--IGLVRAGLWSLWWQWVCLALCVVSFWAPGSPFSSISAYLL  359 (432)
T ss_pred             HHCCCCHHH----HHHHHHHHHHHHHHHHHHHHHHHHH--hcchhhHHHHHHHHHHHHHHHHHHHhcCCCCchhhHHHHH
Confidence            344788744    4999999999999999999999999  9998887777665444433332      212    34455


Q ss_pred             HHHHHHhhccchhhHhhhhhheeeeecCcchhHHHHHHHHHHHHHHHHHHHHHHhhc
Q 039541          176 STIRFVAGFFRAPIMTSVIVLLSEMVSKRWRGQVVIIGFTFFSFGLVSLPAVAYLSR  232 (521)
Q Consensus       176 ~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~rg~~~~~~~~~~~~G~~i~~~i~~~~~  232 (521)
                      +.+-.+.-+|.=+......-++.|..|+++||...|.-....++-.++...++.+.+
T Consensus       360 ~~gi~~SR~GLW~fDL~~~qi~Qe~V~~~~Rg~v~gvq~sl~~lf~ll~~~~~ii~~  416 (432)
T PF06963_consen  360 LGGIALSRIGLWSFDLAVTQIMQENVPESERGAVSGVQNSLQSLFELLSFVLTIIFP  416 (432)
T ss_pred             HHHHHHHHHHHHhhhHHHHHhhcccCCHHHhhHHHHHHHHHHHHHHHHHHHHHhccC
Confidence            555566666666677788889999999999999999999999988888777766553

It is thought to be involved in iron export from duodenal epithelial cells and also in transfer of iron between maternal and fetal circulation. This family of proteins is known to be localised in the basolateral membrane of polarized epithelial cells [].; GO: 0005381 iron ion transmembrane transporter activity, 0034755 iron ion transmembrane transport, 0016021 integral to membrane

>PF07672 MFS_Mycoplasma: Mycoplasma MFS transporter; InterPro: IPR011699 These proteins share some similarity with members of the Major Facilitator Superfamily (MFS)

Probab=96.76  E-value=0.024  Score=50.40  Aligned_cols=48  Identities=8%  Similarity=0.155  Sum_probs=33.3

Q ss_pred             cchhHHHHHHHHHHHHHHHHH--HHH-H-Hh--hcCCchhHHHHHHHHHHHHHH
Q 039541          204 RWRGQVVIIGFTFFSFGLVSL--PAV-A-YL--SRGSSWKMLYVWTSIPSIVCC  251 (521)
Q Consensus       204 ~~rg~~~~~~~~~~~~G~~i~--~~i-~-~~--~~~~~wr~~f~~~~~~~~~~~  251 (521)
                      |+|+..+.+...+.++|.++.  |.+ . ..  ...-+|++.+.+.+++.++-+
T Consensus         2 k~K~~~s~~n~~gf~iG~ii~~ipF~~~~~~~~~~~~~W~~I~si~~lL~~IpL   55 (267)
T PF07672_consen    2 KKKSILSQFNPWGFNIGTIIVNIPFLISSSVVIALTNNWQWILSIFILLIFIPL   55 (267)
T ss_pred             CccceeeeeccccchhhHHHHHhhHHhcchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            567777777888888888875  333 2 11  112369999998888877766

>COG0477 ProP Permeases of the major facilitator superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / Inorganic ion transport and metabolism / General function prediction only]

Probab=96.55  E-value=0.08  Score=49.47  Aligned_cols=110  Identities=22%  Similarity=0.117  Sum_probs=76.1

Q ss_pred             HHHHHHHHHhHhHHHHHHHHHhhcCCchHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Q 039541          361 LSLAFNGLLDIPAYLLTFILIERWSRKSSILTFCILSGTCSAICVAIGDEQEVLQIGLELASFFSACVAFNVLLVFGTEL  440 (521)
Q Consensus       361 ~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  440 (521)
                      .......+...++.++.|.+.||+|||+.+..+.....++.+...+......+...+.....+++.+...+....+..|.
T Consensus        43 ~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~  122 (338)
T COG0477          43 LLLSAFFLGYAIGSLLAGPLGDRYGRRKVLIIGLLLFLLGTLLLALAPNVGLALLLILRLLQGLGGGGLLPVASALLSEW  122 (338)
T ss_pred             HHHHHHHHHHHHHhhhhhhccccccchHHHHHHHHHHHHHHHHHHhCccchHHHHHHHHHHHHhhhHHHHHHHHHHHHHh
Confidence            33344445666667899999999999977777766544444444444441224445555557777788888999999999


Q ss_pred             cCc-hhhhhhhHHHHH-hhhhhhhHHHHHHHh
Q 039541          441 FTT-CVRNSTTSLVRQ-AVNLGAAFSPVLISA  470 (521)
Q Consensus       441 ~~~-~~r~~~~~~~~~-~~~~g~~~~p~~~~~  470 (521)
                      .|+ +.|+...+.... ...+|..++|.+.+.
T Consensus       123 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  154 (338)
T COG0477         123 FPEATERGLAVGLVTLGAGALGLALGPLLAGL  154 (338)
T ss_pred             cCchhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            998 677888888777 567777788866554

>PF01770 Folate_carrier: Reduced folate carrier; InterPro: IPR002666 The reduced folate carrier (a transmembrane glycoprotein) transports reduced folate into mammalian cells via the carrier mediated mechanism (as opposed to the receptor mediated mechanism) it also transports cytotoxic folate analogues used in chemotherapy [], such as methotrexate (MTX)

Probab=96.23  E-value=0.26  Score=47.74  Aligned_cols=125  Identities=14%  Similarity=0.045  Sum_probs=80.2

Q ss_pred             HhHHHHHHHHHhhcCCchHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHhhccccCchhhhhhh
Q 039541          371 IPAYLLTFILIERWSRKSSILTFCILSGTCSAICVAIGDEQEVLQIGLELASFFSACVAFNVLLVFGTELFTTCVRNSTT  450 (521)
Q Consensus       371 ~~~~~~~g~l~dr~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~  450 (521)
                      ++..+....+.|.++.|.+++++.+...+...++.+....  ...-+.-++.|..... -...++++-...|+++--++.
T Consensus        55 l~~l~~vflltd~l~Ykpviil~~~~~i~t~~lll~~~sv--~~mq~~q~~yg~~~a~-evay~sYiys~v~~~~yq~vt  131 (412)
T PF01770_consen   55 LAFLLPVFLLTDYLRYKPVIILQALSYIITWLLLLFGTSV--LAMQLMQFFYGLATAA-EVAYYSYIYSVVDKEHYQKVT  131 (412)
T ss_pred             HHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHCcH--HHHHHHHHHHHHHHHH-HHHHHHHheeecCHHHHHHHH
Confidence            3344567788999999999998888877777776665443  4455555666555433 456667777777888877888


Q ss_pred             HHHHHhhhhhhh----HHHHHHHhhccchhHHHHHHHHHHHHHhHhhhcccc
Q 039541          451 SLVRQAVNLGAA----FSPVLISAGRQNEFLSFGVFGLVVFCFGFFVVFLPE  498 (521)
Q Consensus       451 ~~~~~~~~~g~~----~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  498 (521)
                      +.......+|.+    +|..+......++.....+......++.+..+++|.
T Consensus       132 s~~raa~l~g~~~s~~lgQllvs~~~~sy~~L~~isl~~~~~a~~~~~fLP~  183 (412)
T PF01770_consen  132 SYTRAATLVGRFISSLLGQLLVSFGGVSYFQLNYISLASVSLALLIALFLPM  183 (412)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHcCC
Confidence            777776655544    555555544444555544444444555555566664

Mammalian cells have an absolute requirement for exogenous folates which are needed for growth, and biosynthesis of macromolecules [].; GO: 0005542 folic acid binding, 0008518 reduced folate carrier activity, 0006810 transport, 0016020 membrane

>PRK03612 spermidine synthase; Provisional

Probab=96.05  E-value=0.075  Score=53.90  Aligned_cols=131  Identities=10%  Similarity=0.057  Sum_probs=76.6

Q ss_pred             ccchhhHHHHHHHHHHhhhhhhhccccCCCCchHHHHHHHHHHH---HHHHHH----hccccH-HHHHHHHHHhhccchh
Q 039541          117 ILSGLPSSCFFIGCLLGGLALSTLGDSSSLGRKKLLFLSCFAMS---ITALAT----IFANNI-WIYSTIRFVAGFFRAP  188 (521)
Q Consensus       117 ~~~~~~~s~~~lg~~i~~~~~g~l~dr~~~Grr~~l~~~~~~~~---~~~~~~----~~~~~~-~~l~~~r~l~G~~~g~  188 (521)
                      ...+.+.+++.+|.++|+.+.+++.++  --++ ...+-+.+..   ++..+.    ++...+ ..++..-++.|+..|+
T Consensus        50 ~~~~~ii~~fl~glalGs~l~~~~~~~--~~~~-~~~~e~~i~l~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~l~G~  126 (521)
T PRK03612         50 TQFSTVIGLMLFAMGVGALLSKYLLRD--AAAG-FVAVELLLALLGGLSALILYAAFAFQGLSRLLLYVLVLLIGLLIGM  126 (521)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhhhh--HHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            444999999999999999999887744  3333 3222221111   111111    111111 2233445667888888


Q ss_pred             hHhhhhhheeeeecCcchhHHHHHHHHHHHHHHHHHHHH-HH-hhcCCchhHHHHHHHHHHHHHH
Q 039541          189 IMTSVIVLLSEMVSKRWRGQVVIIGFTFFSFGLVSLPAV-AY-LSRGSSWKMLYVWTSIPSIVCC  251 (521)
Q Consensus       189 ~~~~~~~~i~~~~~~~~rg~~~~~~~~~~~~G~~i~~~i-~~-~~~~~~wr~~f~~~~~~~~~~~  251 (521)
                      ..|....+..+... ++-|+..|-......+|.++|.++ ++ +++..|-....++.+.+.++..
T Consensus       127 ~~Pl~~~~~~~~~~-~~~g~~~g~ly~~ntlGa~~G~l~~~~vLlp~lG~~~t~~~~a~l~~~~a  190 (521)
T PRK03612        127 EIPLLMRILQRIRD-QHLGHNVATVLAADYLGALVGGLAFPFLLLPRLGLIRTAALTGSLNLLAA  190 (521)
T ss_pred             HHHHHHHHHHhccc-cchhhhhhhhHhHHhHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHH
Confidence            88887776654322 234666777888888888888887 43 3445665544445555544444

>KOG3097 consensus Predicted membrane protein [Function unknown]

Probab=95.74  E-value=0.61  Score=43.15  Aligned_cols=100  Identities=18%  Similarity=0.198  Sum_probs=70.9

Q ss_pred             HHHHHHHHhhhhhhhccccCCCCchHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHhhccchhhHhhhhhheeeeecC-
Q 039541          125 CFFIGCLLGGLALSTLGDSSSLGRKKLLFLSCFAMSITALATIFANNIWIYSTIRFVAGFFRAPIMTSVIVLLSEMVSK-  203 (521)
Q Consensus       125 ~~~lg~~i~~~~~g~l~dr~~~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~-  203 (521)
                      ..++..+.+.++.+.+..+  +|-|.++.++...+...-. .-+-+.+..++-.-.+.|++.+..+..--+|+++.-.. 
T Consensus        66 ~~y~~l~~s~m~~~~~Ir~--~g~K~tm~lav~~Y~lyiA-~Nl~pr~~tlVPa~~~~G~aa~p~W~SkgtYlT~~g~~y  142 (390)
T KOG3097|consen   66 ALYLSLIDSSMFMPLLIRF--LGTKWTMVLAVFPYALYIA-ANLEPRYETLVPAGLVLGMAAGPIWASKGTYLTPMGQNY  142 (390)
T ss_pred             hhhHHHHHHHHHHHHHHHH--HhhHHHHHHHHHHHHHHHH-hhcchhHHhhccHHHhhccccccccccCcceecHHHHHH
Confidence            3455666677777789999  9999999998887765332 22446788999999999999999999998888876643 


Q ss_pred             -cch-------------hHHHHHHHHHHHHHHHHHHHH
Q 039541          204 -RWR-------------GQVVIIGFTFFSFGLVSLPAV  227 (521)
Q Consensus       204 -~~r-------------g~~~~~~~~~~~~G~~i~~~i  227 (521)
                       ++|             |....+++...-.|.+++..+
T Consensus       143 a~~~~~q~~~~~~~~ffg~Ffii~~~~qv~gn~issli  180 (390)
T KOG3097|consen  143 ANQRGEQAGDGMKVRFFGEFFIIFQCAQVWGNLISSLI  180 (390)
T ss_pred             HHhhhhhccCceeeeehhHHHHHHHHHHHHHHHHHHHH
Confidence             334             233445555555565555444

>PF00854 PTR2: POT family; InterPro: IPR000109 This entry represents the POT (proton-dependent oligopeptide transport) family, which all appear to be proton dependent transporters

Probab=95.46  E-value=0.068  Score=52.08  Aligned_cols=109  Identities=17%  Similarity=0.075  Sum_probs=79.2

Q ss_pred             hHHHHHHHHHHHHHHHHHh--cCCch-----HHHHHHHHHHHHHHHHHHHHHHHHhhccccCch---hhhhhhHHHHHhh
Q 039541          388 SSILTFCILSGTCSAICVA--IGDEQ-----EVLQIGLELASFFSACVAFNVLLVFGTELFTTC---VRNSTTSLVRQAV  457 (521)
Q Consensus       388 ~~~~~~~~~~~i~~~~~~~--~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~r~~~~~~~~~~~  457 (521)
                      |.+.++.++..++.+++.+  .+...     ...+++.+.+.++|.|+.=+....+..|.++++   .|.......+...
T Consensus         2 ktI~~g~~~~~~G~~ll~l~~~~~~~~~~~~~~~~~~gL~lia~G~G~~K~ni~~~~~dq~~~~~~~~~~~~F~~fY~~i   81 (372)
T PF00854_consen    2 KTILLGSIVYLLGHVLLTLSAIPPSLPSGIQLGLFYIGLALIAVGTGGIKPNISPFGADQYDEDDDSRRDSFFNWFYWGI   81 (372)
T ss_dssp             HHHHHHHHHHHHHHHH--HHHTSSSC------CHHHHHHHHHHHHHHCCHHHHHHHHHHCSSTTTTTHHHHHHHHHHHHH
T ss_pred             HhhhHHHHHHHHHHHHhHHHHhcchhhhhHHHHHHHHHHHHHHhccccccccHHHHHHHHhcccchhhhhhhHHHHHHHH
Confidence            4567777777777776333  22221     146677788889999999999999999999876   4566677778888


Q ss_pred             hhhhhHHHHHHHhh--ccchhHHHHHHHHHHHHHhHhhhcc
Q 039541          458 NLGAAFSPVLISAG--RQNEFLSFGVFGLVVFCFGFFVVFL  496 (521)
Q Consensus       458 ~~g~~~~p~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~  496 (521)
                      ++|+.+++.+.++.  ..++...|.+.++..+++.+.++.-
T Consensus        82 n~G~~~~~~~~~~i~~~~~~~~~f~i~~~~~~~~~~~f~~~  122 (372)
T PF00854_consen   82 NIGSLFSPTLVPYIQQNYGWFLGFGIPAIGMLLALIVFLSG  122 (372)
T ss_dssp             HHHHHHHHHCCCHHHHCS-HHHHHHHHHHHHHHHHHHHHCC
T ss_pred             hhhhHhhcccchhhccccchhhhhhHHHHHHHHHHHHHHhC
Confidence            99999999888774  3678888888888888777665544

The transport of peptides into cells is a well-documented biological phenomenon which is accomplished by specific, energy-dependent transporters found in a number of organisms as diverse as bacteria and humans. The POT family of proteins is distinct from the ABC-type peptide transporters and was uncovered by sequence analyses of a number of recently discovered peptide transport proteins []. These proteins that seem to be mainly involved in the intake of small peptides with the concomitant uptake of a proton []. These integral membrane proteins are predicted to comprise twelve transmembrane regions.; GO: 0005215 transporter activity, 0006857 oligopeptide transport, 0016020 membrane; PDB: 4APS_A 2XUT_C.

>PRK03612 spermidine synthase; Provisional

Probab=95.37  E-value=0.91  Score=46.19  Aligned_cols=54  Identities=15%  Similarity=0.017  Sum_probs=35.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhccccCchhhhhhhHHHHHhhhhhhhHHHHHHHh
Q 039541          416 IGLELASFFSACVAFNVLLVFGTELFTTCVRNSTTSLVRQAVNLGAAFSPVLISA  470 (521)
Q Consensus       416 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~p~~~~~  470 (521)
                      ....++.++..|..+|....+..+....+ -+...|-.+....+|+++|+++.++
T Consensus       114 ~~~~~~~~~l~G~~~Pl~~~~~~~~~~~~-~g~~~g~ly~~ntlGa~~G~l~~~~  167 (521)
T PRK03612        114 YVLVLLIGLLIGMEIPLLMRILQRIRDQH-LGHNVATVLAADYLGALVGGLAFPF  167 (521)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhccccc-hhhhhhhhHhHHhHHHHHHHHHHHH
Confidence            34445566777777777666665433322 2566777778888888888887764

>PF03219 TLC: TLC ATP/ADP transporter; InterPro: IPR004667 These proteins are members of the ATP:ADP Antiporter (AAA) family, which consists of nucleotide transporters that have 12 GES predicted transmembrane regions

Probab=95.27  E-value=3.7  Score=41.25  Aligned_cols=101  Identities=19%  Similarity=0.091  Sum_probs=63.4

Q ss_pred             hHhHHHHHHHHHhhcCCchHHHHHHHHHHHHHHHHHhc--CCc------h---------------------HHHHHHHHH
Q 039541          370 DIPAYLLTFILIERWSRKSSILTFCILSGTCSAICVAI--GDE------Q---------------------EVLQIGLEL  420 (521)
Q Consensus       370 ~~~~~~~~g~l~dr~g~~~~~~~~~~~~~i~~~~~~~~--~~~------~---------------------~~~~~~~~~  420 (521)
                      .++...+-.++.+++++.++.-+..........++++.  +..      .                     .|...+..+
T Consensus        72 a~~f~~~y~kl~n~~s~~~lFy~~~~~F~~fF~~f~~vlyP~~~~lhp~~~~~~~~~~~~~~~~~~i~~~~~Wt~slfYv  151 (491)
T PF03219_consen   72 AILFTILYSKLSNRLSREKLFYIIIIPFLGFFALFAFVLYPNRDILHPDAFADKLLAILPPGFKGFIAMFRNWTFSLFYV  151 (491)
T ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHhhchhhcCCCHHHHHhhhhccchHHHHHHHHHHHHHHHHHH
Confidence            34455667889999999887665544444443333332  110      0                     011222222


Q ss_pred             HHHHHHHHHHH-HHHHhhccccCchhhhhhhHHHHHhhhhhhhHHHHHHHh
Q 039541          421 ASFFSACVAFN-VLLVFGTELFTTCVRNSTTSLVRQAVNLGAAFSPVLISA  470 (521)
Q Consensus       421 ~~~~~~~~~~~-~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~p~~~~~  470 (521)
                      ..-.......+ ..|.+++|..+.++..+-.++.....++|.+++..+..+
T Consensus       152 ~aElwgsvvlSlLFW~fAN~itt~~eAKRfYpl~g~ganigli~sG~~~~~  202 (491)
T PF03219_consen  152 MAELWGSVVLSLLFWGFANEITTVEEAKRFYPLFGLGANIGLIFSGQLTSY  202 (491)
T ss_pred             HHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            22222233344 579999999999999999999999999999888777653

One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers.; GO: 0005471 ATP:ADP antiporter activity, 0005524 ATP binding, 0006810 transport, 0016021 integral to membrane

>KOG0637 consensus Sucrose transporter and related proteins [Carbohydrate transport and metabolism]

Probab=94.90  E-value=0.064  Score=51.75  Aligned_cols=123  Identities=14%  Similarity=-0.024  Sum_probs=75.5

Q ss_pred             HHhhccCCCccHHHHHHH---HHHHhHhHHHHHHHHHhh----cCCchHHHH-HHHHHHHHHHHHHhcCCchH-------
Q 039541          348 LLLGVGNLSFNIYLSLAF---NGLLDIPAYLLTFILIER----WSRKSSILT-FCILSGTCSAICVAIGDEQE-------  412 (521)
Q Consensus       348 ~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~g~l~dr----~g~~~~~~~-~~~~~~i~~~~~~~~~~~~~-------  412 (521)
                      .+.+++..|.+......+   .-+.+++..++.|..+||    +||||..+. +.....++++++.+......       
T Consensus        55 ~tPyl~~lGvphk~~S~iw~~gPi~G~~vQP~vG~~SDrc~sr~GRRRPfI~~~s~~i~~~l~Lig~aaDig~~lgd~~~  134 (498)
T KOG0637|consen   55 LTPYLQSLGVPHKWSSIIWLCGPLSGLLVQPLVGSASDRCTSRYGRRRPFILAGSLLIAVSLFLIGYAADIGLLLGDNER  134 (498)
T ss_pred             ccHHHHHcCCCcccccccccccccccceecccccccccccccccccccchHHHhhHHHHHHHhhhhhHhhhhHHhcCCcc
Confidence            344455555543333322   224566677788899996    788776554 44555566655554422110       


Q ss_pred             --------HHHHHHHHHHHHHHHHHHHHHHHhhccccCchhhhh-hhHHHHHhhhhhhhHHHHHHHh
Q 039541          413 --------VLQIGLELASFFSACVAFNVLLVFGTELFTTCVRNS-TTSLVRQAVNLGAAFSPVLISA  470 (521)
Q Consensus       413 --------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~-~~~~~~~~~~~g~~~~p~~~~~  470 (521)
                              ...++.+.+.-+.........-++..|+..++.+.+ +++....+..+|+.+|-.+.++
T Consensus       135 ~~~~~rai~~~~lg~~LLD~A~n~~qgp~ra~L~Dl~~~d~~~~~Ans~f~~f~avGnvLGY~~g~y  201 (498)
T KOG0637|consen  135 KPVKPRAIVLFILGFWLLDVANNTLQGPCRALLADLARGDAKKTRANSVFSFFMAVGNVLGYALGSY  201 (498)
T ss_pred             cccchHHHHHHHHHhHHHHhhhhhhhhhHHHHHHHhccChhhhhccchhHHHHHHhcceeeeecccc
Confidence                    122333344444555666788899999988877777 8988888888888877665544

>PF03137 OATP: Organic Anion Transporter Polypeptide (OATP) family; InterPro: IPR004156 This family consists of several eukaryotic Organic-Anion-Transporting Polypeptides (OATPs)

Probab=94.75  E-value=0.005  Score=62.59  Aligned_cols=152  Identities=15%  Similarity=0.047  Sum_probs=2.5

Q ss_pred             HHhhccCCCccHHHHHHH---HHHHhHhHHHHHHHHHhhcCCchHHHHHHHHHHHHHHHHHhcCC----------c----
Q 039541          348 LLLGVGNLSFNIYLSLAF---NGLLDIPAYLLTFILIERWSRKSSILTFCILSGTCSAICVAIGD----------E----  410 (521)
Q Consensus       348 ~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~i~~~~~~~~~~----------~----  410 (521)
                      ++.+-+.++.+....+.+   .-++.++..++..++.+|..|-|.+..+.++++++.+++.+-.-          .    
T Consensus        26 lttiErRF~l~S~~~G~i~s~~di~~~~~~~~vsy~g~~~hrprwig~g~~~~~~g~~l~~lPhf~~~~y~~~~~~~~~~  105 (539)
T PF03137_consen   26 LTTIERRFGLSSSQSGLISSSYDIGSLVVVLFVSYFGGRGHRPRWIGIGALLMGLGSLLFALPHFLSGPYSYEEASNSNG  105 (539)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCcceeeecHHHHHHHHHHHhccHhhcCCCcccccccccc
Confidence            344444555554444433   34666667777777778877778888999999988877765310          0    


Q ss_pred             ----------------------------h------HHHHHHHHHHHHHHHHHHHHHHHHhhccccCchhhhhhhHHHHHh
Q 039541          411 ----------------------------Q------EVLQIGLELASFFSACVAFNVLLVFGTELFTTCVRNSTTSLVRQA  456 (521)
Q Consensus       411 ----------------------------~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~  456 (521)
                                                  .      ...+++..++.|++....+++..+|+-|..+++..+...|+....
T Consensus       106 ~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~gq~l~GiG~~pl~tLG~tYiDDnv~~~~splYiGi~~~~  185 (539)
T PF03137_consen  106 NSSISSNLCDSSSSSQASSDCQDCCSSSSSSLSGYFYVFILGQLLIGIGATPLYTLGITYIDDNVSKKNSPLYIGILYAM  185 (539)
T ss_dssp             ----------------------------------------------SSS-------------------------------
T ss_pred             ccccccccccccccccccCccccccccccccchHHHHHHHHHHHHHhccccCCccceeeeeccccccccCccchhhhhHH
Confidence                                        0      024456677788888888999999999999999989999999888


Q ss_pred             hhhhhhHHHHHHHh--------h--c--------------cchhHHHHHHHHHHHHHhHhhhccccC
Q 039541          457 VNLGAAFSPVLISA--------G--R--------------QNEFLSFGVFGLVVFCFGFFVVFLPET  499 (521)
Q Consensus       457 ~~~g~~~~p~~~~~--------~--~--------------~~~~~~~~~~~~~~~~~~~~~~~~~~~  499 (521)
                      ..+|-++|-.+.+.        .  .              ..++..|++.+.+.++..+.++.+|+.
T Consensus       186 ~~lGPa~Gf~lg~~~L~~yvD~~~~~~~~~~i~p~dp~WvGAWWLGfli~g~~~~l~aipl~~FPk~  252 (539)
T PF03137_consen  186 SILGPALGFLLGSFCLRIYVDFPKVPPDGVGITPSDPRWVGAWWLGFLICGILLFLSAIPLFFFPKK  252 (539)
T ss_dssp             -------------------------------------------------------------------
T ss_pred             hhccHHHHHHHHHHHHhceeCCccccccCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHcCCcc
Confidence            87776655444431        0  0              125556777777777777666666643

Several have been identified mostly in human and rat. Different OATPs vary in tissue distribution and substrate specificity. Since the numbering of different OATPs in particular species was based originally on the order of discovery, similarly numbered OATPs in humans and rats did not necessarily correspond in function, tissue distribution and substrate specificity (in spite of the name, some OATPs also transport organic cations and neutral molecules) so a scheme of using digits for rat OATPs and letters for human ones was introduced []. Prostaglandin transporter (PGT) proteins are also considered to be OATP family members. In addition, the methotrexate transporter OATK is closely related to OATPs. This family also includes several predicted proteins from Caenorhabditis elegans and Drosophila melanogaster. This similarity was not previously noted. Note: Members of this family are described (in the UniProtKB/Swiss-Prot database) as belonging to the SLC21 family of transporters.; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 3MRR_P.

>KOG3626 consensus Organic anion transporter [Secondary metabolites biosynthesis, transport and catabolism]

Probab=93.77  E-value=0.21  Score=51.79  Aligned_cols=135  Identities=16%  Similarity=0.074  Sum_probs=97.2

Q ss_pred             HHhHhHHHHHHHHHhhcCCchHHHHHHHHHHHHHHHHHhcC-------------------C-------------------
Q 039541          368 LLDIPAYLLTFILIERWSRKSSILTFCILSGTCSAICVAIG-------------------D-------------------  409 (521)
Q Consensus       368 ~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~i~~~~~~~~~-------------------~-------------------  409 (521)
                      ++..+...+..+...|.-|-+++.++.++++++.++..+..                   .                   
T Consensus       143 ig~~l~i~fVsYfG~r~HrPr~Ig~G~~~m~lgsll~alPHf~~~~y~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~  222 (735)
T KOG3626|consen  143 IGNLLLIIFVSYFGSRGHRPRWIGIGLVLMGLGSLLFALPHFFSGPYEYELEVIKQSVENPSSSLSFCCCNKSTNLCRPS  222 (735)
T ss_pred             cchhhhhHhHHHhccccCccceeeechhHHHHHHHHHhChHHhcCcchhhhhhhhccccCCccccchhhccCCccccCCC
Confidence            55556666677777787788888889999988888776530                   0                   


Q ss_pred             --------c-h--H-HHHHHHHHHHHHHHHHHHHHHHHhhccccCchhhhhhhHHHHHhhhhhhhHHHHHHHh-----hc
Q 039541          410 --------E-Q--E-VLQIGLELASFFSACVAFNVLLVFGTELFTTCVRNSTTSLVRQAVNLGAAFSPVLISA-----GR  472 (521)
Q Consensus       410 --------~-~--~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~p~~~~~-----~~  472 (521)
                              . +  . ..+.+..++.|++....+++..+|+-|...++.-+...|+..++..+|-++|-++.++     .+
T Consensus       223 ~~~~~~~~~~~~~~~llff~~q~l~GIG~Tpi~tlGisYiDDnvk~~~SplYlgi~~~~~~lGPaiGfllgS~~l~lYvD  302 (735)
T KOG3626|consen  223 PENSKREKESTSYPFLLFFLGQLLLGIGATPIFTLGISYIDDNVKKKNSPLYLGILYSMAILGPAIGFLLGSFCLKLYVD  302 (735)
T ss_pred             CCcccccccCCchhHHHHHHHHHHhhcCCCCCccCCCccccccccccCCcHHHHHHHHHHHhhhHHHHHHHHHHHHeeec
Confidence                    0 0  1 1344556666677677788999999999999998999999998887777766666542     00


Q ss_pred             ----------------cchhHHHHHHHHHHHHHhHhhhccccCCCC
Q 039541          473 ----------------QNEFLSFGVFGLVVFCFGFFVVFLPETIGV  502 (521)
Q Consensus       473 ----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  502 (521)
                                      ..|+..|++.+.+.++..+.++++|+...+
T Consensus       303 ~~~~~~~it~~DPrWIGAWWlGFLi~g~~~~~~a~p~f~fPk~lp~  348 (735)
T KOG3626|consen  303 FGLSPIGITPTDPRWIGAWWLGFLICGALLLFSAVPLFFFPKELPK  348 (735)
T ss_pred             cccCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHHHHHhCcccCcc
Confidence                            135667888888888888888888865544

>TIGR00939 2a57 Equilibrative Nucleoside Transporter (ENT)

Probab=93.56  E-value=3  Score=41.42  Aligned_cols=111  Identities=15%  Similarity=0.032  Sum_probs=78.1

Q ss_pred             cchhhHHHHHHHHHHhhhhhhhccccCCCCch--HHHHHH--HHHHHHHHHHHhc---------cccHHHHHHHHHHhhc
Q 039541          118 LSGLPSSCFFIGCLLGGLALSTLGDSSSLGRK--KLLFLS--CFAMSITALATIF---------ANNIWIYSTIRFVAGF  184 (521)
Q Consensus       118 ~~~~~~s~~~lg~~i~~~~~g~l~dr~~~Grr--~~l~~~--~~~~~~~~~~~~~---------~~~~~~l~~~r~l~G~  184 (521)
                      ..-++...|.+|-.+|..+..+..-   -++|  .+++..  =+++....++|..         -++-+..++.-++.|+
T Consensus       308 ~~~i~~~~fNvgD~vGR~~~~~~~~---p~~~~~~l~i~s~~R~iFIPlf~lcn~~~~~~~p~~~~~d~~~~~~~~l~gl  384 (437)
T TIGR00939       308 YPIICFLLFNLFDWLGRSLTSKFMW---PDEDSRWLPILSFLRVLFIPLFLLCNYPQRSRLPVFFPGDAYFIILMLLFGF  384 (437)
T ss_pred             HHHHHHHHHHHHHHHHhhhhheeEe---eCCCccchHHHHHHHHHHHHHHHHhcCCccccCCeeecccHHHHHHHHHHHH
Confidence            3356677778888888875544321   1222  333322  2233333334432         2466677778999999


Q ss_pred             cchhhHhhhhhheeeeecCcchhHHHHHHHHHHHHHHHHHHHHHHhh
Q 039541          185 FRAPIMTSVIVLLSEMVSKRWRGQVVIIGFTFFSFGLVSLPAVAYLS  231 (521)
Q Consensus       185 ~~g~~~~~~~~~i~~~~~~~~rg~~~~~~~~~~~~G~~i~~~i~~~~  231 (521)
                      ..|-.......+..+..++++|..+..+...+..+|..+|..++++.
T Consensus       385 tnGy~~s~~m~~~p~~v~~~e~e~aG~~~~~~l~~Gl~~Gs~l~~~~  431 (437)
T TIGR00939       385 SNGYLGSLSMCLAPRQVDPHEREVAGALMVIFLLVGLALGAVLSFLF  431 (437)
T ss_pred             hhhHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999998887654

>COG3202 ATP/ADP translocase [Energy production and conversion]

Probab=92.92  E-value=11  Score=37.49  Aligned_cols=142  Identities=13%  Similarity=0.001  Sum_probs=80.8

Q ss_pred             HHHHHHHHHHHHHHHHHHhHHhhccCC---CccHHHHHHHHH---H-HhHhHHHHHHHHHhhcCCchHHHHHHHHHHHHH
Q 039541          329 RRLLTIMALAFGIGVVYFGLLLGVGNL---SFNIYLSLAFNG---L-LDIPAYLLTFILIERWSRKSSILTFCILSGTCS  401 (521)
Q Consensus       329 ~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~---~-~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~i~~  401 (521)
                      ..++-..+..++..+.++.+-..-+..   ..++.....+-.   + ++++..++-.++.+++.+.++............
T Consensus        27 ~kflpl~Ll~f~I~~ny~~lR~lKDslvv~~~gae~I~FlK~~~vlP~avif~~iy~kl~~~lt~~~vF~~~~~~F~~fF  106 (509)
T COG3202          27 KKFLPLALLFFCILFNYNLLRSLKDSLVVTRQGAESISFLKTWGVLPSAVIFTIIYQKLLNILTREKVFYIILGFFLGFF  106 (509)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhhheEeecCcchhhHHHHHHHhchHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHH
Confidence            444555555556666655543322211   122222222211   2 344556677888888888887655554444444


Q ss_pred             HHHHhcCC--------------------c-h---------HHHHHHHHHHHHHHHHHHHH-HHHHhhccccCchhhhhhh
Q 039541          402 AICVAIGD--------------------E-Q---------EVLQIGLELASFFSACVAFN-VLLVFGTELFTTCVRNSTT  450 (521)
Q Consensus       402 ~~~~~~~~--------------------~-~---------~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~r~~~~  450 (521)
                      +++++...                    . .         .|...+..+..-.......+ +.+..+.|....++..+-.
T Consensus       107 ~LFa~Vi~P~~~~~hp~~~~~~~~~~~~p~~l~~~ili~~~Ws~s~~Yi~aELWgslV~S~lFw~faNeitt~~eakRFy  186 (509)
T COG3202         107 ALFAFVIYPYKDILHPDPEFSRDLFADLPMFLKWFILIVGEWSYSLFYIMAELWGSLVLSLLFWQFANEITTIEEAKRFY  186 (509)
T ss_pred             HHHHHHHhccccccCCCHHHHHHHHhhCCccceeeeEeecchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHhhhhH
Confidence            44433210                    0 0         02233333333333344445 7888999999999989999


Q ss_pred             HHHHHhhhhhhhHHHHHHHh
Q 039541          451 SLVRQAVNLGAAFSPVLISA  470 (521)
Q Consensus       451 ~~~~~~~~~g~~~~p~~~~~  470 (521)
                      ++.+...+++..++..+..+
T Consensus       187 ~lf~l~~ni~lllsg~~~~~  206 (509)
T COG3202         187 PLFGLGANISLLLSGEVTSW  206 (509)
T ss_pred             HHHHHHHHHHHHHHHHHHHH
Confidence            99999999988877777654

>KOG1479 consensus Nucleoside transporter [Nucleotide transport and metabolism]

Probab=91.54  E-value=1.1  Score=43.27  Aligned_cols=112  Identities=12%  Similarity=0.039  Sum_probs=84.9

Q ss_pred             ccchhhHHH-HHHHHHHhhhhhhhccccCCCCchHHHHHHHHH--HHHHHH------HHhccccHHHHHHHHHHhhccch
Q 039541          117 ILSGLPSSC-FFIGCLLGGLALSTLGDSSSLGRKKLLFLSCFA--MSITAL------ATIFANNIWIYSTIRFVAGFFRA  187 (521)
Q Consensus       117 ~~~~~~~s~-~~lg~~i~~~~~g~l~dr~~~Grr~~l~~~~~~--~~~~~~------~~~~~~~~~~l~~~r~l~G~~~g  187 (521)
                      +..-.+... |.+.-.+|.+.+.++-++   +||...+..++=  +.-...      ...+-++-+.+++.-.+.|+..|
T Consensus       282 ~y~~~~~~l~fN~~d~vG~~~a~~~~~~---~~r~l~i~v~lR~lfiPlF~~cn~~~~~v~~~~~~~~~~l~~~lglsnG  358 (406)
T KOG1479|consen  282 WYALLLVFLSFNVFDLIGSILAALLTWP---DPRKLTIPVLLRLLFIPLFLLCNYPPLPVVFESDGWFIFLMSLLGLSNG  358 (406)
T ss_pred             hhHHHHHHHHhHHHHHhhhhhhhcccCC---CCceehHHHHHHHHHHHHHHHhccCCCCceecCchHHHHHHHHHHhccc
Confidence            455666677 889999998888888876   566555443322  221222      11334677888899999999999


Q ss_pred             hhHhhhhhheeeeecCcchhHHHHHHHHHHHHHHHHHHHHHHhh
Q 039541          188 PIMTSVIVLLSEMVSKRWRGQVVIIGFTFFSFGLVSLPAVAYLS  231 (521)
Q Consensus       188 ~~~~~~~~~i~~~~~~~~rg~~~~~~~~~~~~G~~i~~~i~~~~  231 (521)
                      =.......+..+-.|++++-.+..+.......|...|.+++++.
T Consensus       359 Yltsl~m~~aPk~v~~~e~e~aG~~m~~fl~~Gl~~G~~~s~l~  402 (406)
T KOG1479|consen  359 YLTSLIMMYAPKQVKPSEKEAAGNLMVFFLVGGLALGSLLSWVF  402 (406)
T ss_pred             hHhhheehhcCCCCChHHHHHHHHHHHHHHHHHHHHhhHHHHHH
Confidence            99999999999999999999999999999999999998887653

>KOG2601 consensus Iron transporter [Inorganic ion transport and metabolism]

Probab=91.51  E-value=2.8  Score=39.68  Aligned_cols=38  Identities=8%  Similarity=-0.023  Sum_probs=29.9

Q ss_pred             HHHHHhhccccCchhhhhhhHHHHHhhhhhhhHHHHHH
Q 039541          431 NVLLVFGTELFTTCVRNSTTSLVRQAVNLGAAFSPVLI  468 (521)
Q Consensus       431 ~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~p~~~  468 (521)
                      ....-...|..|++.|..+.|+.|..+..-..+--+++
T Consensus       405 lAVtqimQe~VpEseR~vv~gvqnsL~~~ldll~~ilv  442 (503)
T KOG2601|consen  405 LAVTQIMQETVPESERCVVFGVQNSLNSALDLLKDILV  442 (503)
T ss_pred             HHHHHHHHHhcchhhhhhhHhHHHHHHHHHHHHHHhEE
Confidence            46667788999999999999999998876665554443

>KOG2881 consensus Predicted membrane protein [Function unknown]

Probab=90.88  E-value=6.1  Score=35.11  Aligned_cols=31  Identities=19%  Similarity=-0.003  Sum_probs=19.8

Q ss_pred             HHHHHHHHHhhcCCchHHHHHHHHHHHHHHH
Q 039541          373 AYLLTFILIERWSRKSSILTFCILSGTCSAI  403 (521)
Q Consensus       373 ~~~~~g~l~dr~g~~~~~~~~~~~~~i~~~~  403 (521)
                      +.+.+-+++.|+.-|++.+++.++..+..+.
T Consensus       256 AVigGk~lAskIS~rtVt~~ggi~Fi~Fgl~  286 (294)
T KOG2881|consen  256 AVIGGKYLASKISVRTVTLIGGILFIIFGLV  286 (294)
T ss_pred             HHhhhHHHhhhheeEEEEEecchhHHHHHHH
Confidence            3344556788888888777776655555433

>KOG3574 consensus Acetyl-CoA transporter [Inorganic ion transport and metabolism]

Probab=89.82  E-value=12  Score=35.82  Aligned_cols=124  Identities=14%  Similarity=0.045  Sum_probs=64.3

Q ss_pred             HHHHHhHHhhccCCCccHHHHHHHHHHHhH--hHHHHHHHHHh-----hcCCchHH-HHHHHHHHHHHHHHHhcCCch--
Q 039541          342 GVVYFGLLLGVGNLSFNIYLSLAFNGLLDI--PAYLLTFILIE-----RWSRKSSI-LTFCILSGTCSAICVAIGDEQ--  411 (521)
Q Consensus       342 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~g~l~d-----r~g~~~~~-~~~~~~~~i~~~~~~~~~~~~--  411 (521)
                      +... .+|++++..+.+..... +.++...  --.++...++|     |+||||.. +-+..+.+..+..+....+..  
T Consensus        48 GL~~-~iP~lL~ak~vSyt~~a-~fS~ay~P~sLKllWaPiVDs~y~k~~GrrksWvvp~q~llG~~mllLs~~v~~~~g  125 (510)
T KOG3574|consen   48 GLIG-AIPLLLQAKGVSYTSQA-IFSFAYWPFSLKLLWAPIVDSVYSKRFGRRKSWVVPCQYLLGLFMLLLSYLVDRGLG  125 (510)
T ss_pred             hHhh-hhHHHhcCCCcchhhhh-hhhhhhhHHHHHHHHHhhhHHHHHHhhccccceeeehHHHHHHHHHHHhhCCCcccc
Confidence            4444 78888886655432222 2222222  22356667777     99998743 334455555555554432210  


Q ss_pred             -----H--HHHHHHHHHHHHHHHHHHHHHHHhhccccCchhhhhhhHHHHHhhhhhhhHHHHH
Q 039541          412 -----E--VLQIGLELASFFSACVAFNVLLVFGTELFTTCVRNSTTSLVRQAVNLGAAFSPVL  467 (521)
Q Consensus       412 -----~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~p~~  467 (521)
                           +  ......+++..|....--...-.++..+..++.-|-++.........|.+++-.+
T Consensus       126 ~ng~~p~v~~lt~~f~LLnflaAtQDIAVDgwALtmLs~e~lgyaST~q~Vg~~~GyfL~~~i  188 (510)
T KOG3574|consen  126 GNGGLPNVVALTLLFLLLNFLAATQDIAVDGWALTMLSRENLGYASTCQSVGQTAGYFLGNVV  188 (510)
T ss_pred             cCCCCcchHHHHHHHHHHHHHHhhhhhhhhHHHHHhcCHhhcCchhHHHHHHHhhhHHhhcce
Confidence                 1  1122233344444333334555566666677776777766665566666655443

>KOG4332 consensus Predicted sugar transporter [Carbohydrate transport and metabolism]

Probab=88.57  E-value=5.4  Score=36.06  Aligned_cols=131  Identities=11%  Similarity=0.020  Sum_probs=84.5

Q ss_pred             hhhHHHHHHHHHHhhhhhhhccccCCCCchHHHHHHHHHHHHHHHHHhcc----c---cHHHHHHHHHHhhccchhhHhh
Q 039541          120 GLPSSCFFIGCLLGGLALSTLGDSSSLGRKKLLFLSCFAMSITALATIFA----N---NIWIYSTIRFVAGFFRAPIMTS  192 (521)
Q Consensus       120 ~~~~s~~~lg~~i~~~~~g~l~dr~~~Grr~~l~~~~~~~~~~~~~~~~~----~---~~~~l~~~r~l~G~~~g~~~~~  192 (521)
                      |.+.+.++++..+|+-+..++..|++..-.+.+.+..++.++...+....    +   +...=+++..+.-.+.|..+|.
T Consensus       285 GfiFatFMlASmLGSSla~Rl~s~s~~~ve~ymqivf~vs~a~l~Lpilt~~vsP~kes~~~s~i~F~~~E~cvGlfwPS  364 (454)
T KOG4332|consen  285 GFIFATFMLASMLGSSLASRLLSRSSPKVESYMQIVFLVSIAALLLPILTSSVSPSKESPSESLIGFCLFEACVGLFWPS  364 (454)
T ss_pred             hhHHHHHHHHHHHhhHHHHHHHhcCCcccchHHHHHHHHHHHHHHHHHHHhccCCCcCCchHHHHHHHHHHHHHhhcchH
Confidence            99999999999999999999888833444455555555555444443322    1   2333355666666778889999


Q ss_pred             hhhheeeeecCcchhHHHHHHHHHHHHHHHHHHHHHHhhc--CCchhHHHHHHHHHHHHHH
Q 039541          193 VIVLLSEMVSKRWRGQVVIIGFTFFSFGLVSLPAVAYLSR--GSSWKMLYVWTSIPSIVCC  251 (521)
Q Consensus       193 ~~~~i~~~~~~~~rg~~~~~~~~~~~~G~~i~~~i~~~~~--~~~wr~~f~~~~~~~~~~~  251 (521)
                      ...+-.++.|++.|...+.++..-.++=..++-. ..-.+  ..+-|..|-+......+..
T Consensus       365 imkmRsqyIPEearstimNfFRvPLnifvClvLy-nlh~~~~p~~tr~mf~icS~~~~~a~  424 (454)
T KOG4332|consen  365 IMKMRSQYIPEEARSTIMNFFRVPLNIFVCLVLY-NLHVDAFPTTTRNMFGICSAFLFVAS  424 (454)
T ss_pred             HHHHHHhhCCHHHHhhhhhheechhhHhhhhhhe-ecccccCccccchhhhhhHHHHHHHH
Confidence            9999999999999999888775433221111110 11111  2356677877776665554

>PF01733 Nucleoside_tran: Nucleoside transporter; InterPro: IPR002259 Delayed-early response (DER) gene products include growth progression factors and several unknown products of novel cDNAs

Probab=88.42  E-value=0.16  Score=47.89  Aligned_cols=110  Identities=20%  Similarity=0.151  Sum_probs=3.8

Q ss_pred             hhHHHHHHHHHHhhhhhhhccccCCCCchHHHHHHH--HHHHHHHHHHh----------ccccHHHHHHHHHHhhccchh
Q 039541          121 LPSSCFFIGCLLGGLALSTLGDSSSLGRKKLLFLSC--FAMSITALATI----------FANNIWIYSTIRFVAGFFRAP  188 (521)
Q Consensus       121 ~~~s~~~lg~~i~~~~~g~l~dr~~~Grr~~l~~~~--~~~~~~~~~~~----------~~~~~~~l~~~r~l~G~~~g~  188 (521)
                      .+...|.++-.+|..+.++.--+ ...+|.+.+.++  +++....++|.          +.+|-+..++.-++.|+..|-
T Consensus       186 ~~fl~Fn~gD~iGR~l~~~~~~~-~~~~~~l~~~s~~R~~fiPlf~~cn~~p~~~~~~~~~~~d~~~~i~~~l~g~TNGy  264 (309)
T PF01733_consen  186 VLFLLFNLGDFIGRFLASWPRWP-GPSPRWLWILSLLRFLFIPLFLLCNVQPRPRYLPVLFNSDAWFIILMLLFGFTNGY  264 (309)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HHHHHHHHHHHhcchhcceeEec-ccccccHHHHHHHHHHHHHHHHHHHhhcccccCCCcccchHHHHHHHHHHHHccch
Confidence            45667888888888877764211 012444433211  22222222221          234556778889999999999


Q ss_pred             hHhhhhhheeeeecCcchhHHHHHHHHHHHHHHHHHHHHHHhh
Q 039541          189 IMTSVIVLLSEMVSKRWRGQVVIIGFTFFSFGLVSLPAVAYLS  231 (521)
Q Consensus       189 ~~~~~~~~i~~~~~~~~rg~~~~~~~~~~~~G~~i~~~i~~~~  231 (521)
                      .......+..+..++++|..+..+...+..+|..+|..+++++
T Consensus       265 l~tl~m~~~p~~v~~~e~e~aG~~~~~~L~~Gl~~Gs~ls~~~  307 (309)
T PF01733_consen  265 LSTLAMMYAPKSVSPEERELAGSVMSFFLSFGLFIGSVLSFLL  307 (309)
T ss_dssp             --HHHH-------------------------------------
T ss_pred             hhhceeeeCCCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            9999999999999999999999999999999999988887654

Murine and human cDNAs from one novel DER gene (DER12) have been characterised to identify its product and to examine its role in the growth response []. Both sequences encode a hydrophobic 36kDa protein that is predicted to contain 8 transmembrane (TM) domains. The protein has been localised to the nucleolus, where its concentration increases following mitogen stimulation []. Although the function of the protein is unknown, its identification as a nucleolar gene transcriptionally activated by growth factors implicates it as participating in the proliferative response []. Sequence analysis reveals the protein to share a high degree of similarity with the C-terminal portion of equilibrative nucleoside transporters. These proteins are integral membrane proteins which enable the movement of hydrophilic nucleosides and nucleoside analogs down their concentration gradients across cell membranes. ENT family members have been identified in humans, mice, fish, tunicates, slime molds, and bacteria []. ; GO: 0005337 nucleoside transmembrane transporter activity, 0006810 transport, 0016020 membrane; PDB: 1HXI_A.

>PF06779 DUF1228: Protein of unknown function (DUF1228); InterPro: IPR010645 This entry represents the N terminus of several putative bacterial membrane proteins, which may be sugar transporters

Probab=87.61  E-value=3  Score=30.29  Aligned_cols=64  Identities=14%  Similarity=-0.079  Sum_probs=48.6

Q ss_pred             hHHhhccCCCccHHHHH---HHHHHHhHhHHHHHHHHHhhcCCchHHHHHHHHHHHHHHHHHhcCCc
Q 039541          347 GLLLGVGNLSFNIYLSL---AFNGLLDIPAYLLTFILIERWSRKSSILTFCILSGTCSAICVAIGDE  410 (521)
Q Consensus       347 ~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~i~~~~~~~~~~~  410 (521)
                      .+|...++.+.+.....   ....++-++|.+...++.++..+++.+..+.+...+..+.+.+..+.
T Consensus        14 lLP~M~~~~~ls~~~ag~lasaNy~GYL~GAl~~~~~~~~~~~~~~~~~~l~~~~~~~~~ma~~~~~   80 (85)
T PF06779_consen   14 LLPLMQADGGLSLSQAGWLASANYLGYLVGALLASRLPRHSRPRRLLRAGLLLTVLSTAAMALTHSF   80 (85)
T ss_pred             HhHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHhch
Confidence            35778888777654443   44557778888888888888788888999999888888888776554

Note that many members are hypothetical proteins.

>KOG3880 consensus Predicted small molecule transporter involved in cellular pH homeostasis (Batten disease protein in human) [General function prediction only]

Probab=87.44  E-value=1.8  Score=39.81  Aligned_cols=78  Identities=12%  Similarity=0.070  Sum_probs=65.6

Q ss_pred             HHHHHHHHHHHHhccccHHHHHHHHHHhhccchhhHhhhhhheeeeecCcchhHHHHHHHHHHHHHHHHHHHHHHhhc
Q 039541          155 SCFAMSITALATIFANNIWIYSTIRFVAGFFRAPIMTSVIVLLSEMVSKRWRGQVVIIGFTFFSFGLVSLPAVAYLSR  232 (521)
Q Consensus       155 ~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~rg~~~~~~~~~~~~G~~i~~~i~~~~~  232 (521)
                      -.+++.+...+..+.++++..++.-+.-|+-.|..++...--+.+-.++++|-.+++....+-++|..++.+++.-++
T Consensus       325 vNl~ff~~~a~~~ftpsi~ivf~lI~~EGLlGGasYVNTf~~i~~e~~pd~rEfamsavs~sDS~Gi~lA~~lalplh  402 (409)
T KOG3880|consen  325 VNLLFFLLQAWYWFTPSIWIVFALILFEGLLGGASYVNTFHNIHKETEPDVREFAMSAVSISDSIGIFLAGLLALPLH  402 (409)
T ss_pred             HHHHHHHHHHHHHhccHHHHHHHHHHHHhhcCchHHHHHHHHHhhcCCchHHHHhHhhheecchhhHHHHHHHhccch
Confidence            334555556666788999999999999999999999999888888888899999999999999999999888865544

>COG4262 Predicted spermidine synthase with an N-terminal membrane domain [General function prediction only]

Probab=86.09  E-value=11  Score=35.60  Aligned_cols=107  Identities=12%  Similarity=0.082  Sum_probs=65.9

Q ss_pred             ccchhhHHHHHHHHHHhhhhhhhccccCCCCchHHHHHHHHHHHHHH----HHH-hcc----ccHHHHHHHHHHhhccch
Q 039541          117 ILSGLPSSCFFIGCLLGGLALSTLGDSSSLGRKKLLFLSCFAMSITA----LAT-IFA----NNIWIYSTIRFVAGFFRA  187 (521)
Q Consensus       117 ~~~~~~~s~~~lg~~i~~~~~g~l~dr~~~Grr~~l~~~~~~~~~~~----~~~-~~~----~~~~~l~~~r~l~G~~~g  187 (521)
                      .+.+.+.+.|...+.+|+...-++.|.  --.-+.+..-+++..++.    ++. .|+    ++-+.+++.-++.|.-.|
T Consensus        43 lq~S~Iia~yl~amGlGs~~sry~~dd--~~~~~Fv~vElllgligg~Sa~~ly~~FA~~~~~~~~Vly~lt~vIG~LVG  120 (508)
T COG4262          43 LQTSLIIAGYLAAMGLGSLLSRYVLDD--AALARFVDVELLLGLIGGVSAAALYLLFALESAPSRLVLYALTAVIGVLVG  120 (508)
T ss_pred             eehHHHHHHHHHHhchhhhhhccccCc--hHHHHHHHHHHHHHHhccchHHHHHHHHHhccchHHHHHHHHHHHHHHHHh
Confidence            444999999999999999999998886  333333322222222221    111 222    466788889999999999


Q ss_pred             hhHhhhhhheeeeecCcchhHHHHHHHHHHHHHHHHHHHH
Q 039541          188 PIMTSVIVLLSEMVSKRWRGQVVIIGFTFFSFGLVSLPAV  227 (521)
Q Consensus       188 ~~~~~~~~~i~~~~~~~~rg~~~~~~~~~~~~G~~i~~~i  227 (521)
                      .-.|..+.++..-.  .+-....+.....-.+|.+.+.++
T Consensus       121 ~EiPL~mrml~~r~--a~~k~~~s~vl~~DYLGal~~gLl  158 (508)
T COG4262         121 AEIPLLMRMLQRRQ--AKAKDLGSRVLTLDYLGALAGGLL  158 (508)
T ss_pred             cchHHHHHHHHHHH--HHHHhhhhhhhhhHhhhhhhHHHH
Confidence            99999988876511  111122222223355666666555

>KOG3810 consensus Micronutrient transporters (folate transporter family) [Coenzyme transport and metabolism]

Probab=83.38  E-value=4.4  Score=38.12  Aligned_cols=97  Identities=14%  Similarity=0.079  Sum_probs=76.9

Q ss_pred             ccchhhHHHHHHHHHHhhhhhhhccccCCCCchH--HHHHHHHHHHHHHHHHhccccHHHHHHHHHHhhccchhhHhhhh
Q 039541          117 ILSGLPSSCFFIGCLLGGLALSTLGDSSSLGRKK--LLFLSCFAMSITALATIFANNIWIYSTIRFVAGFFRAPIMTSVI  194 (521)
Q Consensus       117 ~~~~~~~s~~~lg~~i~~~~~g~l~dr~~~Grr~--~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~  194 (521)
                      ...|..-++..+..+++++..|++.-+  +.|..  .+.++.+..+...++++.++++|..+++..+.+..-....+.+.
T Consensus       271 vyNG~veAv~tlLGa~~~~~~g~l~i~--w~r~g~~ll~~~s~~~agllf~m~~t~~Iw~~Ya~yvlfr~~y~l~itiA~  348 (433)
T KOG3810|consen  271 VYNGAVEAVSTLLGAIAALAAGYLNIN--WNRWGDLLLAVGSAVQAGLLFIMAQTQHIWVCYAGYVLFRVIYQLTITIAT  348 (433)
T ss_pred             hhcCHHHHHHHHHHHHHHHHHHheeec--cchhhHHHHHHHHHHhhhhhhhhhcccceehhhhhHHHHHhhHhhhhhHHH
Confidence            334888899999999999999999988  77763  34456666666677788889999998888888877777888888


Q ss_pred             hheeeeecCcchhHHHHHHHH
Q 039541          195 VLLSEMVSKRWRGQVVIIGFT  215 (521)
Q Consensus       195 ~~i~~~~~~~~rg~~~~~~~~  215 (521)
                      .-+++....+.-|..+|+...
T Consensus       349 ~~iA~nL~~e~~gLvFGiNTF  369 (433)
T KOG3810|consen  349 FQIARNLSSELFGLVFGINTF  369 (433)
T ss_pred             HHHHHhhhhhhheeeeehHHH
Confidence            888888887887888777653

>PF07672 MFS_Mycoplasma: Mycoplasma MFS transporter; InterPro: IPR011699 These proteins share some similarity with members of the Major Facilitator Superfamily (MFS)

Probab=81.79  E-value=20  Score=32.47  Aligned_cols=103  Identities=18%  Similarity=0.279  Sum_probs=56.5

Q ss_pred             hhhHHHHHHHHHHhhhhhhhccccCCCCchHHHH----HHHHHHHHHHHHHhc-c----ccHHHHHHHHHHhhccchhhH
Q 039541          120 GLPSSCFFIGCLLGGLALSTLGDSSSLGRKKLLF----LSCFAMSITALATIF-A----NNIWIYSTIRFVAGFFRAPIM  190 (521)
Q Consensus       120 ~~~~s~~~lg~~i~~~~~g~l~dr~~~Grr~~l~----~~~~~~~~~~~~~~~-~----~~~~~l~~~r~l~G~~~g~~~  190 (521)
                      ....-++..|..+|.+..|+.... .+.||+.+.    .++++..++.+.... .    .++..+++.-|+.|++.=+..
T Consensus       144 ~~~~I~fv~g~~~G~~~ig~~nkt-~~kRk~fi~~~~~~gi~~~~l~~~~~~~~g~~~~~~~~~f~I~~Fl~G~f~WgiQ  222 (267)
T PF07672_consen  144 PIFQILFVAGYFLGPFTIGLWNKT-NYKRKPFIHFIISLGIVFFVLSIVVVYFVGPGNAAGFAFFYIFGFLAGFFLWGIQ  222 (267)
T ss_pred             HHHHHHHHHHHhhhceeeccchhh-hhhhhhHHHHHHHHHHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHHHHHHhhh
Confidence            555566667777887888887764 567777665    234444444444211 1    135677778888887654444


Q ss_pred             hhhhhheeeeecCcchhHHHHHHHHHHHHHHHHH
Q 039541          191 TSVIVLLSEMVSKRWRGQVVIIGFTFFSFGLVSL  224 (521)
Q Consensus       191 ~~~~~~i~~~~~~~~rg~~~~~~~~~~~~G~~i~  224 (521)
                      ++...+=-| .+...+-+..-.++..+++|.++-
T Consensus       223 ~ViL~lPhE-yK~~~pk~ig~~Fg~iWGfGY~~y  255 (267)
T PF07672_consen  223 GVILNLPHE-YKGYNPKKIGIQFGLIWGFGYIFY  255 (267)
T ss_pred             HHHhcChhh-hcCCCcceehhHHHHHHHHHHHHH
Confidence            443322222 222233333344455566666653

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	521
1pw4_A	451	Glycerol-3-phosphate transporter; transmembrane, i	5e-08
1pw4_A	451	Glycerol-3-phosphate transporter; transmembrane, i	2e-05
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-06

>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1 Length = 451

 Score = 54.3 bits (131), Expect = 5e-08
 Identities = 23/149 (15%), Positives = 55/149 (36%), Gaps = 6/149 (4%)

Query: 120 GLPSSCFFIGCLLGGLALSTLGDSSSLGRKKL---LFLSCFAMSITALATIFANNIWIYS 176
           G   S   I        + ++ D S+  R  L   L L+   M          ++I +  
Sbjct: 65  GFALSGISIAYGFSKFIMGSVSDRSNP-RVFLPAGLILAAAVMLFMGFVPWATSSIAVMF 123

Query: 177 TIRFVAGFFRAPIMTSVIVLLSEMVSKRWRGQVVIIGFTFFSFG--LVSLPAVAYLSRGS 234
            + F+ G+F+          +    S++ RG +V +     + G  +  L  +  ++  +
Sbjct: 124 VLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLLFLLGMAWFN 183

Query: 235 SWKMLYVWTSIPSIVCCIIIYPFISESPR 263
            W       +  +I+  +  +  + ++P+
Sbjct: 184 DWHAALYMPAFCAILVALFAFAMMRDTPQ 212

>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1 Length = 451

 Score = 46.2 bits (110), Expect = 2e-05
 Identities = 27/146 (18%), Positives = 49/146 (33%), Gaps = 3/146 (2%)

Query: 115 SSILSGLPSSCFFIGCLLGGLALSTLGDSSSLGRKKLLFLSCFAMSITALATIFANNIWI 174
           SS    L       G LL G  +S      + G   + F++   ++        A N  +
Sbjct: 290 SSWAYFLYEYAGIPGTLLCGW-MSDKVFRGNRGATGVFFMTLVTIATIVYWMNPAGNPTV 348

Query: 175 YSTIRFVAGFFRAPIMTSVIVLLSEMVSKRWRGQVV-IIGFTFFSFGLVSLPAV-AYLSR 232
                 V GF     +  + +   E+  K+  G      G   +  G V+  A+  Y   
Sbjct: 349 DMICMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVD 408

Query: 233 GSSWKMLYVWTSIPSIVCCIIIYPFI 258
              W   ++     SI+  I++   +
Sbjct: 409 FFGWDGGFMVMIGGSILAVILLIVVM 434

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 50.2 bits (119), Expect = 1e-06
 Identities = 73/505 (14%), Positives = 145/505 (28%), Gaps = 143/505 (28%)

Query: 24  VSLDEMIEQNLANLGLPQFIQVILISL------LLIFESQQTFISVYTDEEPTWHCINNT 77
           V L   ++  +         ++  ++L        + E  Q         +P W     T
Sbjct: 170 VCLSYKVQCKMDF-------KIFWLNLKNCNSPETVLEMLQKL---LYQIDPNW-----T 214

Query: 78  TTCSSSSDICTLSKSAWAWDR--------PSDTTIISD-WSLECAGSSILSGLPSSCFFI 128
           +    SS+I     S  A  R         +   ++ +  + +   +          F +
Sbjct: 215 SRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNA----------FNL 264

Query: 129 GC-LLGGLALST----LGDSSSLGRKKLLFLSCFAMSITA--LATIFANNIWI-YSTIRF 180
            C +L    L+T    + D  S      + L   +M++T   + ++    +      +  
Sbjct: 265 SCKIL----LTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPR 320

Query: 181 VAGFFRAPIMTSVIV-LLSEMVS--KRWRGQVVIIGF-TFFSFGLVSLPAVAYLSRGSSW 236
                  P   S+I   + + ++    W+  V      T     L  L    Y      +
Sbjct: 321 EV-LTTNPRRLSIIAESIRDGLATWDNWK-HVNCDKLTTIIESSLNVLEPAEYRKM---F 375

Query: 237 KMLYVW---TSIPSIVCCIIIYPFISESPRWLFIHGHEAEAMAVL---KRLASRSNYQSD 290
             L V+     IP+I+  +I          W  +   +   +        L  +   +S 
Sbjct: 376 DRLSVFPPSAHIPTILLSLI----------WFDVIKSDVMVVVNKLHKYSLVEKQPKEST 425

Query: 291 YGLESCCLSNMPPKAKNVIPKLDLYSSLKDLFNRKWAL-RRLLTIMALAFGIGVVYFGLL 349
             +                    +Y  LK     ++AL R ++                 
Sbjct: 426 ISI------------------PSIYLELKVKLENEYALHRSIVD---------------- 451

Query: 350 LGVGNLSFNIYLSLAFNGLLDIPA--YLLTFI--------LIERWSRKSSI-LTFCILSG 398
                  +NI  +   + L+      Y  + I          ER +    + L F  L  
Sbjct: 452 ------HYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQ 505

Query: 399 TCSAICVAIGDEQEVLQIGLELASF----------FSACVAFNVLLVFGTELFTTCVRNS 448
                  A      +L    +L  +          +   V  N +L F  ++    + + 
Sbjct: 506 KIRHDSTAWNASGSILNTLQQLKFYKPYICDNDPKYERLV--NAILDFLPKIEENLICSK 563

Query: 449 TTSLVRQAVNLGAAFSPVLISAGRQ 473
            T L+R A  L A    +   A +Q
Sbjct: 564 YTDLLRIA--LMAEDEAIFEEAHKQ 586

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	521
4gc0_A	491	D-xylose-proton symporter; MFS, transport protein;	100.0
1pw4_A	451	Glycerol-3-phosphate transporter; transmembrane, i	100.0
3o7q_A	438	L-fucose-proton symporter; transporter, multi-PASS	100.0
2gfp_A	375	EMRD, multidrug resistance protein D; membrane pro	99.98
4aps_A	491	DI-OR tripeptide H+ symporter; transport protein,	99.97
2cfq_A	417	Lactose permease; transport, transport mechanism,	99.95
2xut_A	524	Proton/peptide symporter family protein; transport	99.95
1pw4_A	451	Glycerol-3-phosphate transporter; transmembrane, i	99.42
2cfq_A	417	Lactose permease; transport, transport mechanism,	99.36
3o7q_A	438	L-fucose-proton symporter; transporter, multi-PASS	99.3
4aps_A	491	DI-OR tripeptide H+ symporter; transport protein,	99.25
2gfp_A	375	EMRD, multidrug resistance protein D; membrane pro	99.25
2xut_A	524	Proton/peptide symporter family protein; transport	99.1
4gc0_A	491	D-xylose-proton symporter; MFS, transport protein;	98.98

>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*

Probab=100.00  E-value=2e-42  Score=349.85  Aligned_cols=427  Identities=17%  Similarity=0.214  Sum_probs=309.1

Q ss_pred             ChhHHHHHHHHHHHHHHHHHHHhhhhccccCCcccccCCcccccCCccccccccCcceecCCCCcceeeecceeeCCc--
Q 039541           38 GLPQFIQVILISLLLIFESQQTFISVYTDEEPTWHCINNTTTCSSSSDICTLSKSAWAWDRPSDTTIISDWSLECAGS--  115 (521)
Q Consensus        38 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~p~~~c~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~i~~~~~~~~~~~--  115 (521)
                      .++.+.+.++.+++.++.++|...++..                                   +|.+.++++.+.+..  
T Consensus         7 ~~y~~~i~~~a~lg~~~~Gyd~~~i~~~-----------------------------------~~~~~~~~~~~~~~~~~   51 (491)
T 4gc0_A            7 SSYIFSITLVATLGGLLFGYDTAVISGT-----------------------------------VESLNTVFVAPQNLSES   51 (491)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHGGGGT-----------------------------------HHHHHHHHTGGGCCCHH
T ss_pred             hHHHhhHHHHHHHHHHHHHHHHHHHHHH-----------------------------------HHHHHHHhcCCCCCCcc
Confidence            3567777778889999999999999888                                   788888775433211  


Q ss_pred             --cccchhhHHHHHHHHHHhhhhhhhccccCCCCchHHHHHHHHHHHHHHHHHh------------------ccccHHHH
Q 039541          116 --SILSGLPSSCFFIGCLLGGLALSTLGDSSSLGRKKLLFLSCFAMSITALATI------------------FANNIWIY  175 (521)
Q Consensus       116 --~~~~~~~~s~~~lg~~i~~~~~g~l~dr~~~Grr~~l~~~~~~~~~~~~~~~------------------~~~~~~~l  175 (521)
                        +.+.|++.+++.+|..+|++++|+++||  +|||++++++.+++.+++++++                  +++|++++
T Consensus        52 ~~~~~~g~~~s~~~~G~~iG~~~~G~laDr--~GRk~~l~~~~~l~~i~~i~~a~~~~~~~~~~~~~~~~~~~a~~~~~l  129 (491)
T 4gc0_A           52 AANSLLGFCVASALIGCIIGGALGGYCSNR--FGRRDSLKIAAVLFFISGVGSAWPELGFTSINPDNTVPVYLAGYVPEF  129 (491)
T ss_dssp             HHHHHHHHHHHTHHHHHHHHHHHHHHHHHH--TCHHHHHHHHHHHHHHHHHHHHCTTTTTSCSSSSSSCCGGGGGCHHHH
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--hcCHHHHHHHHHHHHHHHHHHHHHhhhhhhhcchhHHHHHHhhhHHHH
Confidence              2456899999999999999999999999  9999999999999999999998                  47899999


Q ss_pred             HHHHHHhhccchhhHhhhhhheeeeecCcchhHHHHHHHHHHHHHHHHHHHHHHhh---------cCCchhHHHHHHHHH
Q 039541          176 STIRFVAGFFRAPIMTSVIVLLSEMVSKRWRGQVVIIGFTFFSFGLVSLPAVAYLS---------RGSSWKMLYVWTSIP  246 (521)
Q Consensus       176 ~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~rg~~~~~~~~~~~~G~~i~~~i~~~~---------~~~~wr~~f~~~~~~  246 (521)
                      +++|+++|++.|+..+....+++|+.|+++|++..++.+.+..+|.++++.++...         ...+||+.+.+..++
T Consensus       130 ~~~R~l~G~g~G~~~~~~~~~i~E~~p~~~rg~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  209 (491)
T 4gc0_A          130 VIYRIIGGIGVGLASMLSPMYIAELAPAHIRGKLVSFNQFAIIFGQLLVYCVNYFIARSGDASWLNTDGWRYMFASECIP  209 (491)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHTTSCGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCTTTTTTTHHHHHHHTTHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhCCHHhhhhhHHhhhhhhhhhhhhhhhcchhhccccccccccchhhHHHhhhhhhh
Confidence            99999999999999999999999999999999999999999999999998885443         234688888888888


Q ss_pred             HHHHHhhhceeeecchhHHHhcCCHHHHHHHHHHHhhhcCCCCCCCccccccCCCCCccccCCCcccccccHHHHhccHH
Q 039541          247 SIVCCIIIYPFISESPRWLFIHGHEAEAMAVLKRLASRSNYQSDYGLESCCLSNMPPKAKNVIPKLDLYSSLKDLFNRKW  326 (521)
Q Consensus       247 ~~~~~~~~~~~~~esp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~  326 (521)
                      .++.. +..+++||||+|+..+++.+++++.+++... .+...++.          .+.++.....+........++.+.
T Consensus       210 ~~~~~-~~~~~~peSp~~L~~~~~~~~a~~~l~~~~~-~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~  277 (491)
T 4gc0_A          210 ALLFL-MLLYTVPESPRWLMSRGKQEQAEGILRKIMG-NTLATQAV----------QEIKHSLDHGRKTGGRLLMFGVGV  277 (491)
T ss_dssp             HHHHH-HHGGGSCCCHHHHHHTTCHHHHHHHHHHHHH-HHHHHHHH----------HHHHHHHHHHHHHTTHHHHSCCTH
T ss_pred             hhhhh-hhhhcCCCChHHHHHcCchhHHHHhHHHhcC-CchhHHHH----------HHHHHHHHhhhhhhhHHHHhcccH
Confidence            88777 7778899999999999999999888877643 21110000          000000000001112233344443


Q ss_pred             HHHHHHHHHHHH-HHHHHHHHhHHhhccCCCcc---HHHHHHHHHHHhHhHHHHHHHHHhhcCCchHHHHHHHHHHHHHH
Q 039541          327 ALRRLLTIMALA-FGIGVVYFGLLLGVGNLSFN---IYLSLAFNGLLDIPAYLLTFILIERWSRKSSILTFCILSGTCSA  402 (521)
Q Consensus       327 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~i~~~  402 (521)
                      .........+.. .+.....++.+...+..+.+   ........++..+++.++++++.||+|||+.+..+...+.++++
T Consensus       278 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~dr~Grr~~~~~~~~~~~~~~~  357 (491)
T 4gc0_A          278 IVIGVMLSIFQQFVGINVVLYYAPEVFKTLGASTDIALLQTIIVGVINLTFTVLAIMTVDKFGRKPLQIIGALGMAIGMF  357 (491)
T ss_dssp             HHHHHHHHHHHHHTCHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhhhhHHHhcchHHHHhcCCCccchhhHHHHHHHHHHHHHHHHHHHHHhhcCcchhccchHHHHHHHH
Confidence            333332222222 23344444455555544433   23344566678889999999999999999999988888887776


Q ss_pred             HHHhc--CCchHHHHHHHHHHHHHHHH-HHHHHHHHhhccccCchhhhhhhHHHHHhhhhhhhHHHHHHHhh--------
Q 039541          403 ICVAI--GDEQEVLQIGLELASFFSAC-VAFNVLLVFGTELFTTCVRNSTTSLVRQAVNLGAAFSPVLISAG--------  471 (521)
Q Consensus       403 ~~~~~--~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~p~~~~~~--------  471 (521)
                      .+...  .....+...+..++...+.+ ...++.+.+.+|++|++.|+++.|+.+..++++++++|.+....        
T Consensus       358 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~fPt~~R~~~~g~~~~~~~~~~~i~~~~~p~l~~~~~~~~  437 (491)
T 4gc0_A          358 SLGTAFYTQAPGIVALLSMLFYVAAFAMSWGPVCWVLLSEIFPNAIRGKALAIAVAAQWLANYFVSWTFPMMDKNSWLVA  437 (491)
T ss_dssp             HHHHHHHTTCCHHHHHHHHHHHHHHHHTTTTHHHHHHHHHSSCTTTHHHHHHHHHHHHHHHHHHHHTHHHHHCHHHHHHH
T ss_pred             HHHHHHhcccchHHHHHHHHHHHHHHHhHHHHHHHHHHHHhCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            65433  22221233333333333322 23467889999999999999999999999999998887765431        


Q ss_pred             ccchhHHHHHHHHHHHHHhHh-hhccccCCCCCCCcchHhhhc
Q 039541          472 RQNEFLSFGVFGLVVFCFGFF-VVFLPETIGVTLCDTLDQQEY  513 (521)
Q Consensus       472 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~  513 (521)
                      ..+....|.+++++++++.++ ++++||||+|++||.++-.|+
T Consensus       438 ~~~~~~~~~i~~~~~~~~~i~~~~~~PETkg~tLeei~~~f~~  480 (491)
T 4gc0_A          438 HFHNGFSYWIYGCMGVLAALFMWKFVPETKGKTLEELEALWEP  480 (491)
T ss_dssp             HHTTCHHHHHHHHHHHHHHHHHHHHCCCCTTCCHHHHGGGTC-
T ss_pred             hhhhhHHHHHHHHHHHHHHHHHHheecCCCCCCHHHHHHHhCC
Confidence            123455677777777776654 578899999999887655444

>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1

Probab=100.00  E-value=3.9e-38  Score=314.82  Aligned_cols=395  Identities=9%  Similarity=-0.007  Sum_probs=307.0

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHhhhhccccCCcccccCCcccccCCccccccccCcceecCCCCcceeeecceeeCCcccc
Q 039541           39 LPQFIQVILISLLLIFESQQTFISVYTDEEPTWHCINNTTTCSSSSDICTLSKSAWAWDRPSDTTIISDWSLECAGSSIL  118 (521)
Q Consensus        39 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~p~~~c~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~  118 (521)
                      +.+|..+..++++.+...++.....+.                                   +|.+.+++ .+.++.   
T Consensus        24 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------------------------------~~~~~~~~-~s~~~~---   64 (451)
T 1pw4_A           24 RLRWQIFLGIFFGYAAYYLVRKNFALA-----------------------------------MPYLVEQG-FSRGDL---   64 (451)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHTSHHHH-----------------------------------HHHTTSST-TCSSCH---
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHH-----------------------------------HHHHHHHh-ccHhHH---
Confidence            456778888888999999998888888                                   89999999 988777   


Q ss_pred             chhhHHHHHHHHHHhhhhhhhccccCCCCchHHHHHHHHHHHHHHHHHhc----cccHHHHHHHHHHhhccchhhHhhhh
Q 039541          119 SGLPSSCFFIGCLLGGLALSTLGDSSSLGRKKLLFLSCFAMSITALATIF----ANNIWIYSTIRFVAGFFRAPIMTSVI  194 (521)
Q Consensus       119 ~~~~~s~~~lg~~i~~~~~g~l~dr~~~Grr~~l~~~~~~~~~~~~~~~~----~~~~~~l~~~r~l~G~~~g~~~~~~~  194 (521)
                       |++.+++.++..++++++|+++||  +|||++++++.++.+++.+++++    ++|++.++++|+++|++.+...+...
T Consensus        65 -g~~~~~~~~~~~~~~~~~G~l~dr--~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~  141 (451)
T 1pw4_A           65 -GFALSGISIAYGFSKFIMGSVSDR--SNPRVFLPAGLILAAAVMLFMGFVPWATSSIAVMFVLLFLCGWFQGMGWPPCG  141 (451)
T ss_dssp             -HHHHHHHHHHHHHHHHHHHHHHHH--SCHHHHHHHHHHHHHHHHHHHHHCHHHHSSSSHHHHHHHHHHHHHHHTHHHHH
T ss_pred             -HHHHHHHHHHHHHHHHhHHHHHHh--cCchHHHHHHHHHHHHHHHHHHhhhhccccHHHHHHHHHHHHHHhhhccchHH
Confidence             999999999999999999999999  99999999999999999999999    99999999999999999999999999


Q ss_pred             hheeeeecCcchhHHHHHHHHHHHHHHHHHHHH-HHhhcCCc-hhHHHHHHHHHHHHHHhhhceeeecchhHHHhcCCHH
Q 039541          195 VLLSEMVSKRWRGQVVIIGFTFFSFGLVSLPAV-AYLSRGSS-WKMLYVWTSIPSIVCCIIIYPFISESPRWLFIHGHEA  272 (521)
Q Consensus       195 ~~i~~~~~~~~rg~~~~~~~~~~~~G~~i~~~i-~~~~~~~~-wr~~f~~~~~~~~~~~~~~~~~~~esp~~~~~~~~~~  272 (521)
                      +++.|++|+++|++++++.+.+..+|.+++|.+ +.+.+..+ ||+.|++.+++.++..++.++++||+|+....+.+. 
T Consensus       142 ~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g~w~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-  220 (451)
T 1pw4_A          142 RTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLLFLLGMAWFNDWHAALYMPAFCAILVALFAFAMMRDTPQSCGLPPIE-  220 (451)
T ss_dssp             HHHHTTCTTTHHHHHHHHHHHHHHHHHTSHHHHHHHHHHHTCCSTTCTHHHHHHHHHHHHHHHHHCCCSSTTTCCCSCT-
T ss_pred             HHHHHHCCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhhccCCHhhcCCCChh-
Confidence            999999999999999999999999999999999 56677778 999999999888887767777889887531110000 


Q ss_pred             HHHHHHHHHhhhcCCCCCCCccccccCCCCCccccCCCcccccccHHHHhccHHHHHHHHHHHHHHHHHHHHHHhHHhhc
Q 039541          273 EAMAVLKRLASRSNYQSDYGLESCCLSNMPPKAKNVIPKLDLYSSLKDLFNRKWALRRLLTIMALAFGIGVVYFGLLLGV  352 (521)
Q Consensus       273 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  352 (521)
                                        +.....+ ++.  +++++++........+++++++.++...+..++..+.........|.++
T Consensus       221 ------------------~~~~~~~-~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  279 (451)
T 1pw4_A          221 ------------------EYKNDYP-DDY--NEKAEQELTAKQIFMQYVLPNKLLWYIAIANVFVYLLRYGILDWSPTYL  279 (451)
T ss_dssp             ------------------TTCCC----------------CCTHHHHHHTSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHB
T ss_pred             ------------------hhccccc-ccc--hhhhhcccccccchHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                              0000000 000  0000000000111257788899887777766666666655555667666


Q ss_pred             cC-CCccHHH---HHHHHHHHhHhHHHHHHHHHhhc--CCchHHHHHHHHHH-HHHHHHHhcCCchHHHHHHHHHHHHHH
Q 039541          353 GN-LSFNIYL---SLAFNGLLDIPAYLLTFILIERW--SRKSSILTFCILSG-TCSAICVAIGDEQEVLQIGLELASFFS  425 (521)
Q Consensus       353 ~~-~~~~~~~---~~~~~~~~~~~~~~~~g~l~dr~--g~~~~~~~~~~~~~-i~~~~~~~~~~~~~~~~~~~~~~~~~~  425 (521)
                      ++ .+.+...   ......++.+++.++.+++.||+  +||+.+..+..+.. ++++++.+.+..+.+...+..++.+++
T Consensus       280 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~  359 (451)
T 1pw4_A          280 KEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLVTIATIVYWMNPAGNPTVDMICMIVIGFL  359 (451)
T ss_dssp             TTBSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHHTTSCCTTCHHHHHHHHHHHHHH
T ss_pred             HHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHH
Confidence            66 6666543   34555677889999999999999  99998888777666 555555554332335566677778888


Q ss_pred             HHHHHHHHHHhhccccCchhhhhhhHHHHHhhhh-hhhHHHHHHHh--hccchhHHHHHHHHHHHHHhHhhhccc
Q 039541          426 ACVAFNVLLVFGTELFTTCVRNSTTSLVRQAVNL-GAAFSPVLISA--GRQNEFLSFGVFGLVVFCFGFFVVFLP  497 (521)
Q Consensus       426 ~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~-g~~~~p~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~  497 (521)
                      .+...+....+..|.+|++.|+++.|+.+....+ |..++|.+.+.  ...++...|.+.+++.+++.++.+.++
T Consensus       360 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~  434 (451)
T 1pw4_A          360 IYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFGWDGGFMVMIGGSILAVILLIVVM  434 (451)
T ss_dssp             HTHHHHHHHHHHHHTSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HhchHHHHHHHHHHHhchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHH
Confidence            8888888899999999999999999999999999 99999999986  334677788888887777766655543

>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*

Probab=100.00  E-value=1.4e-35  Score=295.08  Aligned_cols=367  Identities=11%  Similarity=0.048  Sum_probs=282.2

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHhhhhccccCCcccccCCcccccCCccccccccCcceecCCCCcceeeecceeeCCcccc
Q 039541           39 LPQFIQVILISLLLIFESQQTFISVYTDEEPTWHCINNTTTCSSSSDICTLSKSAWAWDRPSDTTIISDWSLECAGSSIL  118 (521)
Q Consensus        39 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~p~~~c~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~  118 (521)
                      +.++..+.++++..+..+++.....+.                                   .|.+.+++|++.++.   
T Consensus        22 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------------------------------~~~~~~~~g~s~~~~---   63 (438)
T 3o7q_A           22 RSYIIPFALLCSLFFLWAVANNLNDIL-----------------------------------LPQFQQAFTLTNFQA---   63 (438)
T ss_dssp             CTTHHHHHHHHHHHHHHHHHHHHHHHH-----------------------------------HHHHHHHSCCCSHHH---
T ss_pred             hHhHHHHHHHHHHHHHHHHHHHhHHHH-----------------------------------HHHHHHHcCCCHHHH---
Confidence            344556667777788888888888888                                   899999999999666   


Q ss_pred             chhhHHHHHHHHHHhhhhhhhccccCCCCchHHHHHHHHHHHHHHHHH---hccccHHHHHHHHHHhhccchhhHhhhhh
Q 039541          119 SGLPSSCFFIGCLLGGLALSTLGDSSSLGRKKLLFLSCFAMSITALAT---IFANNIWIYSTIRFVAGFFRAPIMTSVIV  195 (521)
Q Consensus       119 ~~~~~s~~~lg~~i~~~~~g~l~dr~~~Grr~~l~~~~~~~~~~~~~~---~~~~~~~~l~~~r~l~G~~~g~~~~~~~~  195 (521)
                       |++.+++.++..++++++|+++||  +|||++++++.++.+++.+++   +++++++.++++|++.|++.+...+...+
T Consensus        64 -g~~~~~~~~~~~i~~~~~G~l~dr--~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~  140 (438)
T 3o7q_A           64 -GLIQSAFYFGYFIIPIPAGILMKK--LSYKAGIITGLFLYALGAALFWPAAEIMNYTLFLVGLFIIAAGLGCLETAANP  140 (438)
T ss_dssp             -HHHHHHHHHHHHTTHHHHHHHHHH--SCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             -HHHHHHHHHHHHHHHHhHHHHHHH--hcchHHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHhhHHHhhhhHHH
Confidence             999999999999999999999999  999999999999999999999   88999999999999999999999999999


Q ss_pred             heeeeecCcchhHHHHHHHHHHHHHHHHHHHH-HHhh-cCCc-------------------------hhHHHHHHHHHHH
Q 039541          196 LLSEMVSKRWRGQVVIIGFTFFSFGLVSLPAV-AYLS-RGSS-------------------------WKMLYVWTSIPSI  248 (521)
Q Consensus       196 ~i~~~~~~~~rg~~~~~~~~~~~~G~~i~~~i-~~~~-~~~~-------------------------wr~~f~~~~~~~~  248 (521)
                      ++.|++|+++|++++++.+.+..+|.+++|.+ +.+. ...+                         ||+.|++.+++.+
T Consensus       141 ~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~  220 (438)
T 3o7q_A          141 FVTVLGPESSGHFRLNLAQTFNSFGAIIAVVFGQSLILSNVPHQSQDVLDKMSPEQLSAYKHSLVLSVQTPYMIIVAIVL  220 (438)
T ss_dssp             HHHHSSCSTTHHHHHHHHHHHHHHHHHHHHHHTTHHHHTSSCCCCHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccccCCcchhhhhhhhhhhhHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999 5555 4444                         9999988877766


Q ss_pred             HHHhhhce-eeecchhHHHhcCCHHHHHHHHHHHhhhcCCCCCCCccccccCCCCCccccCCCcccccccHHHHhccHHH
Q 039541          249 VCCIIIYP-FISESPRWLFIHGHEAEAMAVLKRLASRSNYQSDYGLESCCLSNMPPKAKNVIPKLDLYSSLKDLFNRKWA  327 (521)
Q Consensus       249 ~~~~~~~~-~~~esp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~  327 (521)
                      +..++.++ ..||+++.                    .  +                  +++++.+.+.++++++++|.+
T Consensus       221 ~~~~~~~~~~~p~~~~~--------------------~--~------------------~~~~~~~~~~~~~~~~~~~~~  260 (438)
T 3o7q_A          221 LVALLIMLTKFPALQSD--------------------N--H------------------SDAKQGSFSASLSRLARIRHW  260 (438)
T ss_dssp             HHHHHHHHCCCCCCTTT--------------------C--C------------------CCSSTTSHHHHHHHHTTCSHH
T ss_pred             HHHHHHHHHcCCccccc--------------------c--c------------------ccccccchhhhHHHHHhChHH
Confidence            66533322 23443310                    0  0                  000111122467889999988


Q ss_pred             HHHHHHHHHHHHHHHHHHHhHHhh-ccCC-CccHH---HHHHHHHHHhHhHHHHHHHHHhhcCCchHHHHHHHHHHHHHH
Q 039541          328 LRRLLTIMALAFGIGVVYFGLLLG-VGNL-SFNIY---LSLAFNGLLDIPAYLLTFILIERWSRKSSILTFCILSGTCSA  402 (521)
Q Consensus       328 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~-~~~~~---~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~i~~~  402 (521)
                      +...+..+.............+.+ +++. +.+..   .......++.+++.++.+++.||++||+.+..+.++..++++
T Consensus       261 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~~~~~~~~~~~  340 (438)
T 3o7q_A          261 RWAVLAQFCYVGAQTACWSYLIRYAVEEIPGMTAGFAANYLTGTMVCFFIGRFTGTWLISRFAPHKVLAAYALIAMALCL  340 (438)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhhccCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHH
Confidence            777666665555554444444444 4443 65543   334455677888999999999999999999999988888877


Q ss_pred             HHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHhhccccCchhhhhhhHHHHHhhhhhhhHHHHHHHhh--ccc-hhHHH
Q 039541          403 ICVAIGDEQEVLQIGLELASFFSACVAFNVLLVFGTELFTTCVRNSTTSLVRQAVNLGAAFSPVLISAG--RQN-EFLSF  479 (521)
Q Consensus       403 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~p~~~~~~--~~~-~~~~~  479 (521)
                      ++.+.+..   ...+..++.+++.+..++..+.+..|.+|++ ++.+.++.. ...+|+.++|.+.|..  ..+ +...|
T Consensus       341 ~~~~~~~~---~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~-~~~~g~~~~~~~~g~l~~~~g~~~~~~  415 (438)
T 3o7q_A          341 ISAFAGGH---VGLIALTLCSAFMSIQYPTIFSLGIKNLGQD-TKYGSSFIV-MTIIGGGIVTPVMGFVSDAAGNIPTAE  415 (438)
T ss_dssp             HHHHCCHH---HHHHHHHHHHHHHTTHHHHHHHHHHSSCGGG-HHHHHHHHH-HTTHHHHHHHHHHHHHHHHHTSSGGGG
T ss_pred             HHHHcCCc---HHHHHHHHHHHHHHHHHHHHHHHHHhhcccc-ccchhhHHH-HHHHHHHHHHHHHHHHHHHhcchHHHH
Confidence            76665433   3344557777888888899999999999977 788888877 6779999999999862  223 55666


Q ss_pred             HHHHHHHHHHhH
Q 039541          480 GVFGLVVFCFGF  491 (521)
Q Consensus       480 ~~~~~~~~~~~~  491 (521)
                      .+.+++.++..+
T Consensus       416 ~~~~~~~~~~~~  427 (438)
T 3o7q_A          416 LIPALCFAVIFI  427 (438)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHH
Confidence            655554444333

>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}

Probab=99.98  E-value=4.7e-33  Score=270.91  Aligned_cols=339  Identities=13%  Similarity=0.079  Sum_probs=260.4

Q ss_pred             HHHHHHHHHHHHHHhhhhccccCCcccccCCcccccCCccccccccCcceecCCCCcceeeecceeeCCccccchhhHHH
Q 039541           46 ILISLLLIFESQQTFISVYTDEEPTWHCINNTTTCSSSSDICTLSKSAWAWDRPSDTTIISDWSLECAGSSILSGLPSSC  125 (521)
Q Consensus        46 ~~~~l~~~~~~~~~~~~~~~~~~p~~~c~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~s~  125 (521)
                      .++++..+...++.....+.                                   +|.+.+++|.+.++.    +++.+.
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~-----------------------------------~~~~~~~~g~s~~~~----g~~~~~   43 (375)
T 2gfp_A            3 LMLVLLVAVGQMAQTIYIPA-----------------------------------IADMARDLNVREGAV----QSVMGA   43 (375)
T ss_dssp             HHHHHHHHHHHHHHHHHHHH-----------------------------------HHHHHTTSSSTTHHH----HHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHhhh-----------------------------------hHHHHHHcCCCHHHH----HHHHHH
Confidence            45566777777888878888                                   889999999998666    999999


Q ss_pred             HHHHHHHhhhhhhhccccCCCCchHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHhhccchhhHhhhhhheeeeecCcc
Q 039541          126 FFIGCLLGGLALSTLGDSSSLGRKKLLFLSCFAMSITALATIFANNIWIYSTIRFVAGFFRAPIMTSVIVLLSEMVSKRW  205 (521)
Q Consensus       126 ~~lg~~i~~~~~g~l~dr~~~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~  205 (521)
                      +.++..++++++|+++||  +|||++++.+.++.+++.++.+++++++.+++.|+++|++.+...+...+++.|++|+++
T Consensus        44 ~~~~~~~~~~~~g~l~dr--~g~r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~  121 (375)
T 2gfp_A           44 YLLTYGVSQLFYGPISDR--VGRRPVILVGMSIFMLATLVAVTTSSLTVLIAASAMQGMGTGVGGVMARTLPRDLYERTQ  121 (375)
T ss_dssp             HHHHHHHHHTTHHHHHTT--SCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSS
T ss_pred             HHHHHHHHHHHHHHHHHH--hCCchhHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHhhhhhHHHHHHHHCCHHH
Confidence            999999999999999999  999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhHHHHHHHHHHHHHHHHHHHH-HHhhcCCchhHHHHHHHHHHHHHHhhhceeeecchhHHHhcCCHHHHHHHHHHHhhh
Q 039541          206 RGQVVIIGFTFFSFGLVSLPAV-AYLSRGSSWKMLYVWTSIPSIVCCIIIYPFISESPRWLFIHGHEAEAMAVLKRLASR  284 (521)
Q Consensus       206 rg~~~~~~~~~~~~G~~i~~~i-~~~~~~~~wr~~f~~~~~~~~~~~~~~~~~~~esp~~~~~~~~~~~~~~~~~~~~~~  284 (521)
                      |++++++.+.+..+|.+++|.+ +.+.+..+||+.|++.+++.++..+..++.+||+++..                   
T Consensus       122 ~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------------  182 (375)
T 2gfp_A          122 LRHANSLLNMGILVSPLLAPLIGGLLDTMWNWRACYLFLLVLCAGVTFSMARWMPETRPVD-------------------  182 (375)
T ss_dssp             CCSHHHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHHHCCCCCSSCCCSTTT-------------------
T ss_pred             HHHHHHHHHHHHHHHHHhhHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHCcccCCCC-------------------
Confidence            9999999999999999999999 56666679999999999988888755777788865310                   


Q ss_pred             cCCCCCCCccccccCCCCCccccCCCcccccccHHHHhccHHHHHHHHHHHHHHHHHHHHHHhHHhhccC-CCccHHHHH
Q 039541          285 SNYQSDYGLESCCLSNMPPKAKNVIPKLDLYSSLKDLFNRKWALRRLLTIMALAFGIGVVYFGLLLGVGN-LSFNIYLSL  363 (521)
Q Consensus       285 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~  363 (521)
                      + ++                       ++.+.++++++++|.++...+................|.+.++ .+.+.....
T Consensus       183 ~-~~-----------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g  238 (375)
T 2gfp_A          183 A-PR-----------------------TRLLTSYKTLFGNSGFNCYLLMLIGGLAGIAAFEACSGVLMGAVLGLSSMTVS  238 (375)
T ss_dssp             C-CC-----------------------CCTTTCSTHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSCSSHHHHHHHHHHHH
T ss_pred             c-cc-----------------------ccHHHHHHHHhcCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHH
Confidence            0 00                       0011245677888887776666666555555555555666554 455443333


Q ss_pred             ---HHHHHHhHhHHHHHHHHHhhcCCchHHHHHHHH-HHHHHH--HHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 039541          364 ---AFNGLLDIPAYLLTFILIERWSRKSSILTFCIL-SGTCSA--ICVAIGDEQEVLQIGLELASFFSACVAFNVLLVFG  437 (521)
Q Consensus       364 ---~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~-~~i~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  437 (521)
                         ....++.+++.++.+++.||++++  ...+... ...+..  ........+.+...+..++.+++.+...+....+.
T Consensus       239 ~~~~~~~~~~~~~~~~~~~l~~r~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~  316 (375)
T 2gfp_A          239 ILFILPIPAAFFGAWFAGRPNKRFSTL--MWQSVICCLLAGLLMWIPDWFGVMNVWTLLVPAALFFFGAGMLFPLATSGA  316 (375)
T ss_dssp             HHHHTHHHHHHHHHHHHHTTTTHHHHH--HHHHHHHHHHTSSSSSHHHHHHHHHHHHHHHHHHHHHHHHHHTSSTTHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHhhhccccHHHHHHHHHHHHHHHHHhhHHHHHHH
Confidence               334566677777888888887762  2222222 222211  11111111224455667777888888888999999


Q ss_pred             ccccCchhhhhhhHHHHHhhhhhhhHHHHHHHhh
Q 039541          438 TELFTTCVRNSTTSLVRQAVNLGAAFSPVLISAG  471 (521)
Q Consensus       438 ~~~~~~~~r~~~~~~~~~~~~~g~~~~p~~~~~~  471 (521)
                      .|.+| +.|+++.|+.+....+|..++|.+.+..
T Consensus       317 ~~~~p-~~~g~~~g~~~~~~~~g~~~~~~~~g~l  349 (375)
T 2gfp_A          317 MEPFP-FLAGTAGALVGGLQNIGSGVLASLSAML  349 (375)
T ss_dssp             HTHHH-HHHHHHHHHHHHHHHHHHHCCSTTCTHH
T ss_pred             HHhCC-cccchHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99998 8899999999999999999999888763

>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}

Probab=99.97  E-value=3.7e-31  Score=267.19  Aligned_cols=380  Identities=12%  Similarity=0.060  Sum_probs=245.5

Q ss_pred             eecceeeCCccccchhhHHHHHHHHHHhhhhhhhccccCCC-CchHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHhhc
Q 039541          106 SDWSLECAGSSILSGLPSSCFFIGCLLGGLALSTLGDSSSL-GRKKLLFLSCFAMSITALATIFANNIWIYSTIRFVAGF  184 (521)
Q Consensus       106 ~~~~~~~~~~~~~~~~~~s~~~lg~~i~~~~~g~l~dr~~~-Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~  184 (521)
                      +|+|++.++.    +++.+.+.++..++++++|+++||  + |||+++.++.++.+++.+++++++|++.++++|+++|+
T Consensus        47 ~~~~~s~~~~----~~~~~~~~~~~~~~~~~~g~l~dr--~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~  120 (491)
T 4aps_A           47 GDLHITRATA----ASIMAIYASMVYLSGTIGGFVADR--IIGARPAVFWGGVLIMLGHIVLALPFGASALFGSIILIII  120 (491)
T ss_dssp             TSCCSCHHHH----HHHHHHHHHHHHHHHHHHHHHHHH--TSCHHHHHHHHHHHHHHHHHHHHSCCSTTHHHHHHHHHHH
T ss_pred             hhcCCCHHHH----HHHHHHHHHHHHHHHHHHHHHHhc--cccchHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence            3499998666    999999999999999999999999  8 99999999999999999999999999999999999999


Q ss_pred             cchhhHhhhhhheeeeecCcc--hhHHHHHHHHHHHHHHHHHHHH-HHhhcCCchhHHHHHHHHHHHHHHhhhceeeecc
Q 039541          185 FRAPIMTSVIVLLSEMVSKRW--RGQVVIIGFTFFSFGLVSLPAV-AYLSRGSSWKMLYVWTSIPSIVCCIIIYPFISES  261 (521)
Q Consensus       185 ~~g~~~~~~~~~i~~~~~~~~--rg~~~~~~~~~~~~G~~i~~~i-~~~~~~~~wr~~f~~~~~~~~~~~~~~~~~~~es  261 (521)
                      +.+...+...+++.|++|+++  |+.++++++.+.++|.+++|.+ +.+.+..+||+.|++.++..++..++.++..|+.
T Consensus       121 ~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~  200 (491)
T 4aps_A          121 GTGFLKPNVSTLVGTLYDEHDRRRDAGFSIFVFGINLGAFIAPLIVGAAQEAAGYHVAFSLAAIGMFIGLLVYYFGGKKT  200 (491)
T ss_dssp             HHHHHHHHHHHHHHHHSSSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred             HHHhccchHHHHHHHHcCcccccceeeehHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhCccc
Confidence            999999999999999999988  7788888999999999999998 6677778999999998877776663333322221


Q ss_pred             hh----HHHhcCCHHHHHHHHHH--------------HhhhcCCCCCCCccccccCCC--CC----ccccCCCccccccc
Q 039541          262 PR----WLFIHGHEAEAMAVLKR--------------LASRSNYQSDYGLESCCLSNM--PP----KAKNVIPKLDLYSS  317 (521)
Q Consensus       262 p~----~~~~~~~~~~~~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~--~~----~~~~~~~~~~~~~~  317 (521)
                      .+    ....+.+.++.++..+.              ... .+.. +...........  ..    .....++..   ..
T Consensus       201 ~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~-~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~  275 (491)
T 4aps_A          201 LDPHYLRPTDPLAPEEVKPLLVKVSLAVAGFIAIIVVMNL-VGWN-SLPAYINLLTIVAIAIPVFYFAWMISSVK---VT  275 (491)
T ss_dssp             CCSCCSCCSCCCSHHHHHHHHHHCCCCCHHHHHHHHHHHH-HSSC-CTTHHHHHHHHHHHHHHHHHHHHHC---------
T ss_pred             ccccccCCCCccccchhHHHHHHHHHHHHHHHHHHHHHHh-ccCc-ccccchhhhhHHHHHHHHHHHHHHhhccc---cc
Confidence            10    00001122222222221              000 0000 000000000000  00    000000000   00


Q ss_pred             HHHHhccHHHHHHHHHHHHHHHHHHHHHHhHHhhccC-CCc---cHHHHHHHHHHHhHhHHHHHHHHHhhcCCchHHH--
Q 039541          318 LKDLFNRKWALRRLLTIMALAFGIGVVYFGLLLGVGN-LSF---NIYLSLAFNGLLDIPAYLLTFILIERWSRKSSIL--  391 (521)
Q Consensus       318 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~---~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~--  391 (521)
                      ..+..+....+...+.....+..........+.+.++ .+.   ..........+..+++.++.+++.||++||+...  
T Consensus       276 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~~~r~~~~~~  355 (491)
T 4aps_A          276 STEHLRVVSYIPLFIAAVLFWAIEEQGSVVLATFAAERVDSSWFPVSWFQSLNPLFIMLYTPFFAWLWTAWKKNQPSSPT  355 (491)
T ss_dssp             ------CTTHHHHHHHHHHHHHHHGGGGTHHHHHHHHSCCCSSSCSGGGTTHHHHHHHHHHHHHHHHHHHTTTC---CHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHhccCccCHHHHhccchHHHHHHHHHHHHHHHHHhccCCCchH
Confidence            0000011111112222222222222112222222222 222   2333345556677778889999999999986544  


Q ss_pred             ---HHHHHHHHHHHHHHhcC-------CchHHHHHHHHHHHHHHHHHHHHHHHHhhccccCchhhhhhhHHHHHhhhhhh
Q 039541          392 ---TFCILSGTCSAICVAIG-------DEQEVLQIGLELASFFSACVAFNVLLVFGTELFTTCVRNSTTSLVRQAVNLGA  461 (521)
Q Consensus       392 ---~~~~~~~i~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~  461 (521)
                         .+..+.+++++++....       ..+.++..+..++.+++.+...+..+.++.|.+|++.|+++.|+.+....+|.
T Consensus       356 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~  435 (491)
T 4aps_A          356 KFAVGLMFAGLSFLLMAIPGALYGTSGKVSPLWLVGSWALVILGEMLISPVGLSVTTKLAPKAFNSQMMSMWFLSSSVGS  435 (491)
T ss_dssp             HHHHHHHHHHHHHTTTHHHHHHCCCCTTCCTHHHHHHHHHHHHHHHTTTTHHHHHHHHHTTTTCSSSSTHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhcCCCCCccHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHH
Confidence               66666666665555421       11225566677778888877788889999999999999999999999999999


Q ss_pred             hHHHHHHHhh-ccchhHHHHHHHHHHHHHhHhhhcc
Q 039541          462 AFSPVLISAG-RQNEFLSFGVFGLVVFCFGFFVVFL  496 (521)
Q Consensus       462 ~~~p~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~  496 (521)
                      +++|.+.+.. +.++...|.+++++.+++.+..+..
T Consensus       436 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  471 (491)
T 4aps_A          436 ALNAQLVTLYNAKSEVAYFSYFGLGSVVLGIVLVFL  471 (491)
T ss_dssp             HHHHHHGGGGGGSSTTHHHHHTHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999863 3456667777777776666554433

>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*

Probab=99.95  E-value=7.9e-28  Score=237.10  Aligned_cols=354  Identities=13%  Similarity=0.055  Sum_probs=227.7

Q ss_pred             ceeeecceeeCCccccchhhHHHHHHHHHHhhhhhhhccccCCCCchHHHHHHHHHHHHHHH---HHhccccHH-HHHHH
Q 039541          103 TIISDWSLECAGSSILSGLPSSCFFIGCLLGGLALSTLGDSSSLGRKKLLFLSCFAMSITAL---ATIFANNIW-IYSTI  178 (521)
Q Consensus       103 ~i~~~~~~~~~~~~~~~~~~~s~~~lg~~i~~~~~g~l~dr~~~Grr~~l~~~~~~~~~~~~---~~~~~~~~~-~l~~~  178 (521)
                      .+++++|++..+.    |++.+.+.++..++++++|+++||  +|||++++++..+.+++..   ...+++... .++.+
T Consensus        33 ~l~~~~g~s~~~~----g~~~~~~~~~~~i~~~~~G~lsDr--~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  106 (417)
T 2cfq_A           33 WLHDINHISKSDT----GIIFAAISLFSLLFQPLFGLLSDK--LGLRKYLLWIITGMLVMFAPFFIFIFGPLLQYNILVG  106 (417)
T ss_dssp             HHHTTTCCCTTTS----HHHHHHHHHHHHHHHHHHHHHHTT--STTCCHHHHHHHHTTSCHHHHHHHTHHHHHHTTCCHH
T ss_pred             HHHHHhCCCHHHH----HHHHHHHHHHHHHHHHHHHHHHHH--hcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3567799999777    999999999999999999999999  9999999998887765322   122322221 24566


Q ss_pred             HHHhhccchhhHhhhhhheeeeecC--cchhHHHHHHHHHHHHHHHHHHHH-HHhhcCCchhHHHHHHHHHHHHHHhhhc
Q 039541          179 RFVAGFFRAPIMTSVIVLLSEMVSK--RWRGQVVIIGFTFFSFGLVSLPAV-AYLSRGSSWKMLYVWTSIPSIVCCIIIY  255 (521)
Q Consensus       179 r~l~G~~~g~~~~~~~~~i~~~~~~--~~rg~~~~~~~~~~~~G~~i~~~i-~~~~~~~~wr~~f~~~~~~~~~~~~~~~  255 (521)
                      +++.|++.|...+.....+.++.++  ++|+...+....+..+|..++|.+ +++.+ .+||+.|++.++..++.. +..
T Consensus       107 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~l~~~l~~-~~~~~~f~~~~~~~~~~~-~~~  184 (417)
T 2cfq_A          107 SIVGGIYLGFCFNAGAPAVEAFIEKVSRRSNFEFGRARMFGCVGWALGASIVGIMFT-INNQFVFWLGSGCALILA-VLL  184 (417)
T ss_dssp             HHGGGSSTTHHHHTTHHHHHHHHHHHHHHHTCCHHHHSSSTTTHHHHHHHHHHHHHH-HCSHHHHTTTTTTTTTHH-HHS
T ss_pred             HHHHHHHHHHHHhhhHHHHHHHHHHhhhhcccchHHHHHHHHHHHHHHHHHHHHHHH-hchhHHHHHHHHHHHHHH-HHH
Confidence            7777777766665555555555543  356777788877888899999988 44444 589999998877765555 333


Q ss_pred             eeee-cchhHHHhcCCHHHHHHHHHHHhhhcCCCCCCCccccccCCCCCccccCCCcccccccHHHHhccHHHHHHHHHH
Q 039541          256 PFIS-ESPRWLFIHGHEAEAMAVLKRLASRSNYQSDYGLESCCLSNMPPKAKNVIPKLDLYSSLKDLFNRKWALRRLLTI  334 (521)
Q Consensus       256 ~~~~-esp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~  334 (521)
                      ++.+ |+|+.    .+              .. +      .   +    +  + ++++....++++++++|.++...+..
T Consensus       185 ~~~~~~~~~~----~~--------------~~-~------~---~----~--~-~~~~~~~~~~~~~~~~~~~~~~~~~~  229 (417)
T 2cfq_A          185 FFAKTDAPSS----AT--------------VA-N------A---V----G--A-NHSAFSLKLALELFRQPKLWFLSLYV  229 (417)
T ss_dssp             CSSCCCCSCS----SC--------------SS-S------S---S----S--S-CCCCCCHHHHHHHTTCHHHHHHHHHH
T ss_pred             HHcCcccccc----cc--------------cc-c------c---c----c--c-ccccccHHHHHHHhcCCchhhHHHHH
Confidence            4443 33210    00              00 0      0   0    0  0 00001112456788888876555443


Q ss_pred             HHHHHHHHHHHHhHHhhccC-CC---ccH---HHHHHHHHHHhHhHHHHHHHHHhhcCCchHHHHHHHHHHHHHHHHHhc
Q 039541          335 MALAFGIGVVYFGLLLGVGN-LS---FNI---YLSLAFNGLLDIPAYLLTFILIERWSRKSSILTFCILSGTCSAICVAI  407 (521)
Q Consensus       335 ~~~~~~~~~~~~~~~~~~~~-~~---~~~---~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~i~~~~~~~~  407 (521)
                      +.............|.++.+ .+   .+.   .....+..++.+++.++.+++.||+|||+.+..+..+.++..+.+.+.
T Consensus       230 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~~~~l~~~~~~~~~~~~~~~~~  309 (417)
T 2cfq_A          230 IGVSCTYDVFDQQFANFFTSFFATGEQGTRVFGYVTTMGELLNASIMFFAPLIINRIGGKNALLLAGTIMSVRIIGSSFA  309 (417)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHTSSSHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhccCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHh
Confidence            33322222211112322221 11   111   222334446677889999999999999999888888877776665544


Q ss_pred             CCchHHHHHHHHHHHHHHHHHHHHHHHHhhccccCchhhhhhhHHH-HHhhhhhhhHHHHHHHhh--ccchhHHHHHHHH
Q 039541          408 GDEQEVLQIGLELASFFSACVAFNVLLVFGTELFTTCVRNSTTSLV-RQAVNLGAAFSPVLISAG--RQNEFLSFGVFGL  484 (521)
Q Consensus       408 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~-~~~~~~g~~~~p~~~~~~--~~~~~~~~~~~~~  484 (521)
                      .+.  +...+..++.+++.+...+..+.+..|.+|++.|+++.++. +....+|++++|.+.|+.  ..++...|.+.++
T Consensus       310 ~~~--~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~lg~~~gp~l~G~l~~~~g~~~~f~~~~~  387 (417)
T 2cfq_A          310 TSA--LEVVILKTLHMFEVPFLLVGCFKYITSQFEVRFSATIYLVCFCFFKQLAMIFMSVLAGNMYESIGFQGAYLVLGL  387 (417)
T ss_dssp             CSH--HHHHHHTTHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTHHHHHHHHTHHHHTHHHHSHHHHHHHHHHH
T ss_pred             ccH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHhHHHHHhhhhHHHHHHhcCcHHHHHHHHH
Confidence            332  34444555556666666667788999999999999999984 778889999999999863  2345667777777


Q ss_pred             HHHHHhHhh-hccccCCC
Q 039541          485 VVFCFGFFV-VFLPETIG  501 (521)
Q Consensus       485 ~~~~~~~~~-~~~~~~~~  501 (521)
                      +.+++.+.. +..+|+++
T Consensus       388 ~~l~~~~~~~~~~~~~~~  405 (417)
T 2cfq_A          388 VALGFTLISVFTLSGPGP  405 (417)
T ss_dssp             HHHHHHHHHTTSSCCSCT
T ss_pred             HHHHHHHHHHhhhcCCCc
Confidence            777766654 34454433

>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}

Probab=99.95  E-value=2.6e-27  Score=241.03  Aligned_cols=146  Identities=11%  Similarity=0.077  Sum_probs=131.9

Q ss_pred             ceeeecc------eeeCCccccchhhHHHHHHHHHHhhhhhhhccccCCC-CchHHHHHHHHHHHHHHHHHhccc-cHHH
Q 039541          103 TIISDWS------LECAGSSILSGLPSSCFFIGCLLGGLALSTLGDSSSL-GRKKLLFLSCFAMSITALATIFAN-NIWI  174 (521)
Q Consensus       103 ~i~~~~~------~~~~~~~~~~~~~~s~~~lg~~i~~~~~g~l~dr~~~-Grr~~l~~~~~~~~~~~~~~~~~~-~~~~  174 (521)
                      .+.+++|      ++..+.    +++.+++.++..++++++|+++||  + |||+++.++.++.+++.++.++++ +++.
T Consensus        38 ~l~~~~~~~~~~~~s~~~~----g~~~~~~~~~~~~~~~~~G~l~dr--~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~  111 (524)
T 2xut_A           38 FLMTALLLSIPEELRGAVA----KDVFHSFVIGVYFFPLLGGWIADR--FFGKYNTILWLSLIYCVGHAFLAIFEHSVQG  111 (524)
T ss_dssp             HHHHSCSSCCSSSTTTTTH----HHHHHHHHHHHHHTHHHHHHHHTT--SSCSHHHHHHHHHHHHHHHHHHHHTSSCHHH
T ss_pred             HHHHHhccccccccCHHHH----HHHHHHHHHHHHHHHHHHHHHHHH--HhcchHHHHHHHHHHHHHHHHHHHhcccHHH
Confidence            4566777      888776    999999999999999999999999  9 999999999999999999999999 9999


Q ss_pred             HHHHHHHhhccchhhHhhhhhheeeeecCcchhHHHHH---HHHHHHHHHHHHHHH-HHhhcCCchhHHHHHHHHHHHHH
Q 039541          175 YSTIRFVAGFFRAPIMTSVIVLLSEMVSKRWRGQVVII---GFTFFSFGLVSLPAV-AYLSRGSSWKMLYVWTSIPSIVC  250 (521)
Q Consensus       175 l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~rg~~~~~---~~~~~~~G~~i~~~i-~~~~~~~~wr~~f~~~~~~~~~~  250 (521)
                      ++++|++.|++.+...+...+++.|++|+++|+++.+.   .+.+.++|.+++|.+ +.+.+..+||+.|++.+++.++.
T Consensus       112 ~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g~~~~f~~~~~~~~~~  191 (524)
T 2xut_A          112 FYTGLFLIALGSGGIKPLVSSFMGDQFDQSNKSLAQKAFDMFYFTINFGSFFASLSMPLLLKNFGAAVAFGIPGVLMFVA  191 (524)
T ss_dssp             HHHHHHHHHHHHHTTHHHHHHHHHHTCSTTTTTHHHHHHHHHHHHHHHHHHHHHHTSTHHHHTSCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhccccchhHHHHHHHHcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999877666   889999999999998 67777789999999988887766


Q ss_pred             Hhhh
Q 039541          251 CIII  254 (521)
Q Consensus       251 ~~~~  254 (521)
                      .++.
T Consensus       192 ~~~~  195 (524)
T 2xut_A          192 TVFF  195 (524)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            5333

>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1

Probab=99.42  E-value=2.3e-12  Score=127.89  Aligned_cols=145  Identities=15%  Similarity=0.104  Sum_probs=126.3

Q ss_pred             eeecceeeCCccccchhhHHHHHHHHHHhhhhhhhccccCCC--CchHHHHHHHHHHH-HHHHHHhcc--ccHHHHHHHH
Q 039541          105 ISDWSLECAGSSILSGLPSSCFFIGCLLGGLALSTLGDSSSL--GRKKLLFLSCFAMS-ITALATIFA--NNIWIYSTIR  179 (521)
Q Consensus       105 ~~~~~~~~~~~~~~~~~~~s~~~lg~~i~~~~~g~l~dr~~~--Grr~~l~~~~~~~~-~~~~~~~~~--~~~~~l~~~r  179 (521)
                      ++.+|.+..+.    +++.+...++..++.++.|++.||  +  |||+.+..+..+.. ++.++..+.  .+.+.+.+.-
T Consensus       280 ~~~~g~~~~~~----~~~~~~~~~~~~~~~~~~g~l~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  353 (451)
T 1pw4_A          280 KEVKHFALDKS----SWAYFLYEYAGIPGTLLCGWMSDK--VFRGNRGATGVFFMTLVTIATIVYWMNPAGNPTVDMICM  353 (451)
T ss_dssp             TTBSCCCHHHH----HHHHHHHHHHHHHHHHHHHHHHHH--TSTTCHHHHHHHHHHHHHHHHHHTTSCCTTCHHHHHHHH
T ss_pred             HHhcCCCHHHH----HHHHHHHHHHHHHHHHHHHHHHHH--HhcCCchhHHHHHHHHHHHHHHHHHHhcccCHHHHHHHH
Confidence            34488888555    999999999999999999999999  9  99999988877776 777777766  4788888889


Q ss_pred             HHhhccchhhHhhhhhheeeeecCcchhHHHHHHHHHHHH-HHHHHHHH-HHhhcCCchhHHHHHHHHHHHHHHhhhc
Q 039541          180 FVAGFFRAPIMTSVIVLLSEMVSKRWRGQVVIIGFTFFSF-GLVSLPAV-AYLSRGSSWKMLYVWTSIPSIVCCIIIY  255 (521)
Q Consensus       180 ~l~G~~~g~~~~~~~~~i~~~~~~~~rg~~~~~~~~~~~~-G~~i~~~i-~~~~~~~~wr~~f~~~~~~~~~~~~~~~  255 (521)
                      ++.|++.+...+....++.|.+|+++|++++++.+....+ |..++|.+ +.+.+..||+..|++.+++.++..++.+
T Consensus       354 ~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~  431 (451)
T 1pw4_A          354 IVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFGWDGGFMVMIGGSILAVILLI  431 (451)
T ss_dssp             HHHHHHHTHHHHHHHHHHHHTSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhchHHHHHHHHHHHhchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHH
Confidence            9999999989999999999999999999999999999999 99999988 7888888999999998888877774433

>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*

Probab=99.36  E-value=1.4e-12  Score=128.02  Aligned_cols=142  Identities=11%  Similarity=0.112  Sum_probs=121.7

Q ss_pred             chhhHHHHHHHHHHhhhhhhhccccCCCCchHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHhhccchhhHhhhhhhee
Q 039541          119 SGLPSSCFFIGCLLGGLALSTLGDSSSLGRKKLLFLSCFAMSITALATIFANNIWIYSTIRFVAGFFRAPIMTSVIVLLS  198 (521)
Q Consensus       119 ~~~~~s~~~lg~~i~~~~~g~l~dr~~~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~  198 (521)
                      .++..+...++..++.++.|+++||  +|||+++..+.++.+++.++.++.++.+.+++..++.|++.+...+....++.
T Consensus       261 ~g~~~~~~~~~~~~~~~~~g~l~dr--~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~  338 (417)
T 2cfq_A          261 FGYVTTMGELLNASIMFFAPLIINR--IGGKNALLLAGTIMSVRIIGSSFATSALEVVILKTLHMFEVPFLLVGCFKYIT  338 (417)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHH--HCHHHHHHHHHHHHHHHHHHHTTCCSHHHHHHHTTHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH--hcHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3778888888889999999999999  99999999999998888888888888888888888888887777777888999


Q ss_pred             eeecCcchhHHHHH-HHHHHHHHHHHHHHH-HHhhcCCchhHHHHHHHHHHHHHHhhhceeeecch
Q 039541          199 EMVSKRWRGQVVII-GFTFFSFGLVSLPAV-AYLSRGSSWKMLYVWTSIPSIVCCIIIYPFISESP  262 (521)
Q Consensus       199 ~~~~~~~rg~~~~~-~~~~~~~G~~i~~~i-~~~~~~~~wr~~f~~~~~~~~~~~~~~~~~~~esp  262 (521)
                      |.+|++.|+++.++ ++....+|.+++|.+ |.+.+..|++..|.+.+++.++..++.++..||.+
T Consensus       339 ~~~p~~~~g~~~g~~~~~~~~lg~~~gp~l~G~l~~~~g~~~~f~~~~~~~l~~~~~~~~~~~~~~  404 (417)
T 2cfq_A          339 SQFEVRFSATIYLVCFCFFKQLAMIFMSVLAGNMYESIGFQGAYLVLGLVALGFTLISVFTLSGPG  404 (417)
T ss_dssp             HHSCHHHHHHHHHHHHTTTHHHHHHHHTHHHHTHHHHSHHHHHHHHHHHHHHHHHHHHTTSSCCSC
T ss_pred             HHCCHHHHHHHHHHHHHHHHhHHHHHhhhhHHHHHHhcCcHHHHHHHHHHHHHHHHHHHhhhcCCC
Confidence            99999999999998 478888999999988 67777778999999988888877755566667654

>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*

Probab=99.30  E-value=7.2e-11  Score=116.61  Aligned_cols=126  Identities=14%  Similarity=-0.038  Sum_probs=104.3

Q ss_pred             HHHHhHHhhccCCCccHHHH---HHHHHHHhHhHHHHHHHHHhhcCCchHHHHHHHHHHHHHHHH---HhcCCchHHHHH
Q 039541          343 VVYFGLLLGVGNLSFNIYLS---LAFNGLLDIPAYLLTFILIERWSRKSSILTFCILSGTCSAIC---VAIGDEQEVLQI  416 (521)
Q Consensus       343 ~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~i~~~~~---~~~~~~~~~~~~  416 (521)
                      ......|.+.++++.+....   .....++..++.++.|+++||+|||+.+.++.++.+++.++.   ...++.  +..+
T Consensus        44 ~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~--~~l~  121 (438)
T 3o7q_A           44 LNDILLPQFQQAFTLTNFQAGLIQSAFYFGYFIIPIPAGILMKKLSYKAGIITGLFLYALGAALFWPAAEIMNY--TLFL  121 (438)
T ss_dssp             HHHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHTTHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHTTCH--HHHH
T ss_pred             hHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcchHHHHHHHHHHHHHHHHHHhccccccH--HHHH
Confidence            33344566667777654433   345556777899999999999999999999999999998887   554444  6777


Q ss_pred             HHHHHHHHHHHHHHHHHHHhhccccCchhhhhhhHHHHHhhhhhhhHHHHHHHh
Q 039541          417 GLELASFFSACVAFNVLLVFGTELFTTCVRNSTTSLVRQAVNLGAAFSPVLISA  470 (521)
Q Consensus       417 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~p~~~~~  470 (521)
                      +..++.|++.+...+...+++.|.+|++.|+.+.++.+....+|..++|.+.+.
T Consensus       122 ~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~  175 (438)
T 3o7q_A          122 VGLFIIAAGLGCLETAANPFVTVLGPESSGHFRLNLAQTFNSFGAIIAVVFGQS  175 (438)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHSSCSTTHHHHHHHHHHHHHHHHHHHHHHTTH
T ss_pred             HHHHHHHhhHHHhhhhHHHHHHHHcCchhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            888999999999999999999999999999999999999999999999998875

>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}

Probab=99.25  E-value=1.7e-10  Score=115.70  Aligned_cols=138  Identities=12%  Similarity=0.069  Sum_probs=111.4

Q ss_pred             CCccHHH---HHHHHHHHhHhHHHHHHHHHhh-cCCchHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHH
Q 039541          355 LSFNIYL---SLAFNGLLDIPAYLLTFILIER-WSRKSSILTFCILSGTCSAICVAIGDEQEVLQIGLELASFFSACVAF  430 (521)
Q Consensus       355 ~~~~~~~---~~~~~~~~~~~~~~~~g~l~dr-~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  430 (521)
                      .+.+...   ......++..++.++.|+++|| +|||+++..+.++.+++.++..+..+.  +...+..++.|++.+...
T Consensus        49 ~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~g~r~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~l~g~~~~~~~  126 (491)
T 4aps_A           49 LHITRATAASIMAIYASMVYLSGTIGGFVADRIIGARPAVFWGGVLIMLGHIVLALPFGA--SALFGSIILIIIGTGFLK  126 (491)
T ss_dssp             CCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHHSCCST--THHHHHHHHHHHHHHHHH
T ss_pred             cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHHHHhhhH--HHHHHHHHHHHHHHHhcc
Confidence            5655443   3345567778899999999999 899999999999999998888776554  567777888899999999


Q ss_pred             HHHHHhhccccCchh--hhhhhHHHHHhhhhhhhHHHHHHHh--hccchhHHHHHHHHHHHHHhHhhh
Q 039541          431 NVLLVFGTELFTTCV--RNSTTSLVRQAVNLGAAFSPVLISA--GRQNEFLSFGVFGLVVFCFGFFVV  494 (521)
Q Consensus       431 ~~~~~~~~~~~~~~~--r~~~~~~~~~~~~~g~~~~p~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~  494 (521)
                      +...+++.|.+|++.  |+.+.++.+....+|..++|.+.+.  ...++...|.+.++..+++.+..+
T Consensus       127 ~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~~  194 (491)
T 4aps_A          127 PNVSTLVGTLYDEHDRRRDAGFSIFVFGINLGAFIAPLIVGAAQEAAGYHVAFSLAAIGMFIGLLVYY  194 (491)
T ss_dssp             HHHHHHHHHHSSSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHH
T ss_pred             chHHHHHHHHcCcccccceeeehHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999988  7788888889999999999999986  335677777777766666555543

>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}

Probab=99.25  E-value=8.1e-11  Score=113.68  Aligned_cols=161  Identities=12%  Similarity=0.033  Sum_probs=123.9

Q ss_pred             HHHHHHHHhHHhhccCCCccHHHH---HHHHHHHhHhHHHHHHHHHhhcCCchHHHHHHHHHHHHHHHHHhcCCchHHHH
Q 039541          339 FGIGVVYFGLLLGVGNLSFNIYLS---LAFNGLLDIPAYLLTFILIERWSRKSSILTFCILSGTCSAICVAIGDEQEVLQ  415 (521)
Q Consensus       339 ~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~  415 (521)
                      +.........|.+.++.+.+....   .....++..++.++.|+++||+|||+.+..+..+..++.+...+.++.  +..
T Consensus        14 ~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~--~~l   91 (375)
T 2gfp_A           14 MAQTIYIPAIADMARDLNVREGAVQSVMGAYLLTYGVSQLFYGPISDRVGRRPVILVGMSIFMLATLVAVTTSSL--TVL   91 (375)
T ss_dssp             HHHHHHHHHHHHHHTTSSSTTHHHHHHHHHHHHHHHHHHTTHHHHHTTSCCCCCCHHHHHHHHHHHHHHHHHHHH--HHH
T ss_pred             HHHHHHhhhhHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHHhccH--HHH
Confidence            333444444566777777665443   344556777889999999999999999999999999988887775433  667


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhccccCchhhhhhhHHHHHhhhhhhhHHHHHHHhhc--cchhHHHHHHHHHHHHHhH-h
Q 039541          416 IGLELASFFSACVAFNVLLVFGTELFTTCVRNSTTSLVRQAVNLGAAFSPVLISAGR--QNEFLSFGVFGLVVFCFGF-F  492 (521)
Q Consensus       416 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~p~~~~~~~--~~~~~~~~~~~~~~~~~~~-~  492 (521)
                      .+..++.|++.+...+....++.|.+|+++|+++.++.+....+|..++|.+.+...  .++...+.+.++..++..+ .
T Consensus        92 ~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~  171 (375)
T 2gfp_A           92 IAASAMQGMGTGVGGVMARTLPRDLYERTQLRHANSLLNMGILVSPLLAPLIGGLLDTMWNWRACYLFLLVLCAGVTFSM  171 (375)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHTSSCCSHHHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHHHCCC
T ss_pred             HHHHHHHHHHHHhhhhhHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhccHHHHHHHHHHHHHHHHHHH
Confidence            777888899999999999999999999999999999999999999999999998743  2566667767766666555 3


Q ss_pred             hhccccCCC
Q 039541          493 VVFLPETIG  501 (521)
Q Consensus       493 ~~~~~~~~~  501 (521)
                      .+.+||+++
T Consensus       172 ~~~~~~~~~  180 (375)
T 2gfp_A          172 ARWMPETRP  180 (375)
T ss_dssp             CCSSCCCST
T ss_pred             HHHCcccCC
Confidence            455666543

>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}

Probab=99.10  E-value=1.7e-09  Score=109.53  Aligned_cols=134  Identities=12%  Similarity=0.064  Sum_probs=106.7

Q ss_pred             HHHHHHHHHHhHhHHHHHHHHHhhc-CCchHHHHHHHHHHHHHHHHHhcC-CchHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 039541          360 YLSLAFNGLLDIPAYLLTFILIERW-SRKSSILTFCILSGTCSAICVAIG-DEQEVLQIGLELASFFSACVAFNVLLVFG  437 (521)
Q Consensus       360 ~~~~~~~~~~~~~~~~~~g~l~dr~-g~~~~~~~~~~~~~i~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  437 (521)
                      ........++..++.++.|+++||+ |||+++.++.++.+++.++..+.. +.  +..++..++.|++.+...+...+++
T Consensus        57 g~~~~~~~~~~~~~~~~~G~l~dr~~g~r~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~l~g~~~~~~~~~~~~~~  134 (524)
T 2xut_A           57 KDVFHSFVIGVYFFPLLGGWIADRFFGKYNTILWLSLIYCVGHAFLAIFEHSV--QGFYTGLFLIALGSGGIKPLVSSFM  134 (524)
T ss_dssp             HHHHHHHHHHHHHTHHHHHHHHTTSSCSHHHHHHHHHHHHHHHHHHHHTSSCH--HHHHHHHHHHHHHHHTTHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHhcccH--HHHHHHHHHHHHhccccchhHHHHH
Confidence            3444556677788999999999999 999999999999998888887765 43  5667777888999888899999999


Q ss_pred             ccccCchhhhhhhHH---HHHhhhhhhhHHHHHHHhh--ccchhHHHHHHHHHHHHHhHhhhc
Q 039541          438 TELFTTCVRNSTTSL---VRQAVNLGAAFSPVLISAG--RQNEFLSFGVFGLVVFCFGFFVVF  495 (521)
Q Consensus       438 ~~~~~~~~r~~~~~~---~~~~~~~g~~~~p~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~  495 (521)
                      .|.+|++.|+++.+.   .+....+|..++|.+.+..  ..++...|.+.+++.+++.+..+.
T Consensus       135 ~~~~~~~~r~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~  197 (524)
T 2xut_A          135 GDQFDQSNKSLAQKAFDMFYFTINFGSFFASLSMPLLLKNFGAAVAFGIPGVLMFVATVFFWL  197 (524)
T ss_dssp             HHTCSTTTTTHHHHHHHHHHHHHHHHHHHHHHTSTHHHHTSCHHHHHHHHHHHHHHHHHHHHS
T ss_pred             HHHcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999876666   8888899999999988753  346777777777776665555443

>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*

Probab=98.98  E-value=5.4e-10  Score=112.12  Aligned_cols=154  Identities=16%  Similarity=0.141  Sum_probs=110.4

Q ss_pred             cceeeecceeeCCccccchhhHHHHHHHHHHhhhhhhhccccCCCCchHHHHHHHHHHHHHHHHHhcc-----ccHHHHH
Q 039541          102 TTIISDWSLECAGSSILSGLPSSCFFIGCLLGGLALSTLGDSSSLGRKKLLFLSCFAMSITALATIFA-----NNIWIYS  176 (521)
Q Consensus       102 ~~i~~~~~~~~~~~~~~~~~~~s~~~lg~~i~~~~~g~l~dr~~~Grr~~l~~~~~~~~~~~~~~~~~-----~~~~~l~  176 (521)
                      |.+.++.+.+..+.    ........+...++.++.+++.||  +|||+.++.+....+++.+..+..     ++...++
T Consensus       301 ~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~l~dr--~Grr~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~  374 (491)
T 4gc0_A          301 PEVFKTLGASTDIA----LLQTIIVGVINLTFTVLAIMTVDK--FGRKPLQIIGALGMAIGMFSLGTAFYTQAPGIVALL  374 (491)
T ss_dssp             HHHHHHSSCCHHHH----HHHHHHHHHHHHHHHHHHHHHHHH--HCSHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHH
T ss_pred             hHHHHhcCCCccch----hhHHHHHHHHHHHHHHHHHHHHHh--hcCcchhccchHHHHHHHHHHHHHHhcccchHHHHH
Confidence            44555555555333    566667778888999999999999  999999999888888777665443     2222222


Q ss_pred             H-HHHHhhccchhhHhhhhhheeeeecCcchhHHHHHHHHHHHHHHHHHHHH-HHh------hcCCchhHHHHHHHHHHH
Q 039541          177 T-IRFVAGFFRAPIMTSVIVLLSEMVSKRWRGQVVIIGFTFFSFGLVSLPAV-AYL------SRGSSWKMLYVWTSIPSI  248 (521)
Q Consensus       177 ~-~r~l~G~~~g~~~~~~~~~i~~~~~~~~rg~~~~~~~~~~~~G~~i~~~i-~~~------~~~~~wr~~f~~~~~~~~  248 (521)
                      . .-+..+++.+ ..+....+.+|.+|.+.|++++++......+|.++++.+ ..+      ....++.+.|++.+++++
T Consensus       375 ~~~~~~~~~~~~-~~~~~~~~~~E~fPt~~R~~~~g~~~~~~~~~~~i~~~~~p~l~~~~~~~~~~~~~~~~~i~~~~~~  453 (491)
T 4gc0_A          375 SMLFYVAAFAMS-WGPVCWVLLSEIFPNAIRGKALAIAVAAQWLANYFVSWTFPMMDKNSWLVAHFHNGFSYWIYGCMGV  453 (491)
T ss_dssp             HHHHHHHHHHTT-TTHHHHHHHHHSSCTTTHHHHHHHHHHHHHHHHHHHHTHHHHHCHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhH-HHHHHHHHHHHhCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHH
Confidence            2 2222333332 446777899999999999999999998888888877655 222      223466778888888888


Q ss_pred             HHHhhhceeeecch
Q 039541          249 VCCIIIYPFISESP  262 (521)
Q Consensus       249 ~~~~~~~~~~~esp  262 (521)
                      +..++.++++|||.
T Consensus       454 ~~~i~~~~~~PETk  467 (491)
T 4gc0_A          454 LAALFMWKFVPETK  467 (491)
T ss_dssp             HHHHHHHHHCCCCT
T ss_pred             HHHHHHHheecCCC
Confidence            88878889999984

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	521
d1pw4a_	447	f.38.1.1 (A:) Glycerol-3-phosphate transporter {Es	3e-09

>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]} Length = 447

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: Glycerol-3-phosphate transporter
domain: Glycerol-3-phosphate transporter
species: Escherichia coli [TaxId: 562]

 Score = 57.0 bits (136), Expect = 3e-09
 Identities = 41/383 (10%), Positives = 106/383 (27%), Gaps = 23/383 (6%)

Query: 120 GLPSSCFFIGCLLGGLALSTLGDSSSLGRKKLLFLSCFAMSITALATIF----ANNIWIY 175
           G   S   I        + ++ D      +  L       +   L   F     ++I + 
Sbjct: 62  GFALSGISIAYGFSKFIMGSVSDR--SNPRVFLPAGLILAAAVMLFMGFVPWATSSIAVM 119

Query: 176 STIRFVAGFFRAPIMTSVIVLLSEMVSKRWRGQVVIIGFTFFSFG--LVSLPAVAYLSRG 233
             + F+ G+F+          +    S++ RG +V +     + G  +  L  +  ++  
Sbjct: 120 FVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLLFLLGMAWF 179

Query: 234 SSWKMLYVWTSIPSIVCCIIIYPFISESPRWLFIHGHEAEAMAVLKRLASRSNYQSDYGL 293
           + W       +  +I+  +  +  + ++P+   +   E            ++        
Sbjct: 180 NDWHAALYMPAFCAILVALFAFAMMRDTPQSCGLPPIEEYKNDYPDDYNEKAE------- 232

Query: 294 ESCCLSNMPPKAKNVIPKLDLYSSLKDLFNRKWALRRLLTIMALAFGIGVVYFGLLLGVG 353
                          I    +  +    +     +   L    +          +     
Sbjct: 233 --------QELTAKQIFMQYVLPNKLLWYIAIANVFVYLLRYGILDWSPTYLKEVKHFAL 284

Query: 354 NLSFNIYLSLAFNGLLDIPAYLLTFILIERWSRKSSILTFCILSGTCSAICVAIGDEQEV 413
           + S   Y    + G+            + R +R ++ + F  L    + +          
Sbjct: 285 DKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLVTIATIVYWMNPAGNPT 344

Query: 414 LQIGLELASFFSACVAFNVLLVFGTELFTTCVRNSTTSLVRQAVNLGAAFSPVLISAGRQ 473
           + +   +   F       ++ +   EL       +          LG + +   I     
Sbjct: 345 VDMICMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTV 404

Query: 474 NEFLSFGVFGLVVFCFGFFVVFL 496
           + F   G F +++      V+ L
Sbjct: 405 DFFGWDGGFMVMIGGSILAVILL 427

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	521
d1pw4a_	447	Glycerol-3-phosphate transporter {Escherichia coli	100.0
d1pv7a_	417	Lactose permease {Escherichia coli [TaxId: 562]}	99.95
d1pv7a_	417	Lactose permease {Escherichia coli [TaxId: 562]}	99.52
d1pw4a_	447	Glycerol-3-phosphate transporter {Escherichia coli	99.23

>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]}

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: Glycerol-3-phosphate transporter
domain: Glycerol-3-phosphate transporter
species: Escherichia coli [TaxId: 562]

Probab=100.00  E-value=2.1e-37  Score=306.55  Aligned_cols=396  Identities=10%  Similarity=-0.012  Sum_probs=286.1

Q ss_pred             CChhHHHHHHHHHHHHHHHHHHHhhhhccccCCcccccCCcccccCCccccccccCcceecCCCCcceeeecceeeCCcc
Q 039541           37 LGLPQFIQVILISLLLIFESQQTFISVYTDEEPTWHCINNTTTCSSSSDICTLSKSAWAWDRPSDTTIISDWSLECAGSS  116 (521)
Q Consensus        37 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~p~~~c~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~i~~~~~~~~~~~~  116 (521)
                      +++++|.++..++++++....+...++.+                                   .|.++ |+|++.+|. 
T Consensus        19 ~~~~~w~i~~~~~~~~~~~~~~~~~~~~~-----------------------------------~p~~~-~~g~s~~~~-   61 (447)
T d1pw4a_          19 YRRLRWQIFLGIFFGYAAYYLVRKNFALA-----------------------------------MPYLV-EQGFSRGDL-   61 (447)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHTSHHHH-----------------------------------HHHTT-SSTTCSSCH-
T ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHHHH-----------------------------------HHHHH-HhCcCHHHH-
Confidence            34678999999999999999998888888                                   78776 589999887 


Q ss_pred             ccchhhHHHHHHHHHHhhhhhhhccccCCCCchHHHHHHHHHHHHHHHHHhccc----cHHHHHHHHHHhhccchhhHhh
Q 039541          117 ILSGLPSSCFFIGCLLGGLALSTLGDSSSLGRKKLLFLSCFAMSITALATIFAN----NIWIYSTIRFVAGFFRAPIMTS  192 (521)
Q Consensus       117 ~~~~~~~s~~~lg~~i~~~~~g~l~dr~~~Grr~~l~~~~~~~~~~~~~~~~~~----~~~~l~~~r~l~G~~~g~~~~~  192 (521)
                         |++.+++.++..++++++|+++||  +|||+++.++.++.+++.+++++++    +++.+++.|++.|++.|...+.
T Consensus        62 ---g~~~s~~~~~~~~~~~~~G~l~Dr--~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~  136 (447)
T d1pw4a_          62 ---GFALSGISIAYGFSKFIMGSVSDR--SNPRVFLPAGLILAAAVMLFMGFVPWATSSIAVMFVLLFLCGWFQGMGWPP  136 (447)
T ss_dssp             ---HHHHHHHHHHHHHHHHHHHHHHHH--SCHHHHHHHHHHHHHHHHHHHHHCHHHHSSSSHHHHHHHHHHHHHHHTHHH
T ss_pred             ---HHHHHHHHHHHHHHHHHHHHHHHH--cCchHHHHHHHHHHHHHHhhccccchhhhhHHHHHHHHHHHHHhhhhhhhH
Confidence               999999999999999999999999  9999999999999999999988774    7889999999999999999999


Q ss_pred             hhhheeeeecCcchhHHHHHHHHHHHHHHHHHHHHH-Hhhc-CCchhHHHHHHHHHHHHHHhhhceeeecchhHHHhcCC
Q 039541          193 VIVLLSEMVSKRWRGQVVIIGFTFFSFGLVSLPAVA-YLSR-GSSWKMLYVWTSIPSIVCCIIIYPFISESPRWLFIHGH  270 (521)
Q Consensus       193 ~~~~i~~~~~~~~rg~~~~~~~~~~~~G~~i~~~i~-~~~~-~~~wr~~f~~~~~~~~~~~~~~~~~~~esp~~~~~~~~  270 (521)
                      ..+++.|++|+++|++++++.+.+..+|.++++.++ .... ..+||+.|++.+++.++..++.+++++|+|+.......
T Consensus       137 ~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  216 (447)
T d1pw4a_         137 CGRTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLLFLLGMAWFNDWHAALYMPAFCAILVALFAFAMMRDTPQSCGLPPI  216 (447)
T ss_dssp             HHHHHHTTCTTTHHHHHHHHHHHHHHHHHTSHHHHHHHHHHHTCCSTTCTHHHHHHHHHHHHHHHHHCCCSSTTTCCCSC
T ss_pred             HHHHHHHHHHhhcccccccccccccchhhhhhhhhhhhHhhhhhcccccchhhhhhHHHHHHHHHHhcccchhhcccchh
Confidence            999999999999999999999999999999999884 3333 45899999999988888886777777877642111000


Q ss_pred             HHHHHHHHHHHhhhcCCCCCCCccccccCCCCCccccCCCcccccccHHHHhccHHHHHHHHHHHHHHHHHHHHHHhHHh
Q 039541          271 EAEAMAVLKRLASRSNYQSDYGLESCCLSNMPPKAKNVIPKLDLYSSLKDLFNRKWALRRLLTIMALAFGIGVVYFGLLL  350 (521)
Q Consensus       271 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  350 (521)
                      .+                   . ...+.++  ..++.+.+........+..++++.++......++............+.
T Consensus       217 ~~-------------------~-~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  274 (447)
T d1pw4a_         217 EE-------------------Y-KNDYPDD--YNEKAEQELTAKQIFMQYVLPNKLLWYIAIANVFVYLLRYGILDWSPT  274 (447)
T ss_dssp             TT-------------------T-CCC---------------CCTHHHHHHTSSCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hh-------------------h-hhhcccc--hhhccccccchhhHHHHHHHcCchHHHHHHHhhhhhhhhhcchhhhhh
Confidence            00                   0 0000000  000011111111234667788887766666555555554444444444


Q ss_pred             hc-cCCCccHH---HHHHHHHHHhHhHHHHHHHHHhhcCCchHHHHHHHHHH---HHHHHHHhcCCchHHHHHHHHHHHH
Q 039541          351 GV-GNLSFNIY---LSLAFNGLLDIPAYLLTFILIERWSRKSSILTFCILSG---TCSAICVAIGDEQEVLQIGLELASF  423 (521)
Q Consensus       351 ~~-~~~~~~~~---~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~---i~~~~~~~~~~~~~~~~~~~~~~~~  423 (521)
                      ++ +..+.+..   ....+..+..+++.++.|++.||++|++..........   ++...+......+.+...+..++.+
T Consensus       275 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g  354 (447)
T d1pw4a_         275 YLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLVTIATIVYWMNPAGNPTVDMICMIVIG  354 (447)
T ss_dssp             HBTTBSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHHTTSCCTTCHHHHHHHHHHHH
T ss_pred             hcccccccccchhhhhhhcchhhhhhhhhhhhhhhhhccccccccccchhHHHHHHHHHHHHhcccccHHHHHHHHHHHH
Confidence            44 44455433   33455567788899999999999998764433333222   2222222222333355666777778


Q ss_pred             HHHHHHHHHHHHhhccccCchhhhhhhHHHHHhhhhh-hhHHHHHHHh--hccchhHHHHHHHHHHHHHhHhhhcc
Q 039541          424 FSACVAFNVLLVFGTELFTTCVRNSTTSLVRQAVNLG-AAFSPVLISA--GRQNEFLSFGVFGLVVFCFGFFVVFL  496 (521)
Q Consensus       424 ~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g-~~~~p~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~  496 (521)
                      ++.+...+....+..|.+|++.|+++.|+.+...+++ .+++|.+.++  ...++...+.+++++.+++.++...+
T Consensus       355 ~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~~g~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~  430 (447)
T d1pw4a_         355 FLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFGWDGGFMVMIGGSILAVILLIVV  430 (447)
T ss_dssp             HHHTHHHHHHHHHHHHTSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHH
Confidence            8888888889999999999999999999999888774 5678888876  34456677777777666666554433

>d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]}

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: LacY-like proton/sugar symporter
domain: Lactose permease
species: Escherichia coli [TaxId: 562]

Probab=99.95  E-value=6.4e-27  Score=227.55  Aligned_cols=356  Identities=12%  Similarity=0.030  Sum_probs=242.9

Q ss_pred             Ccc-eeeecceeeCCccccchhhHHHHHHHHHHhhhhhhhccccCCCCchHHHHHHHHHHHHHHHHHhccccHHH----H
Q 039541          101 DTT-IISDWSLECAGSSILSGLPSSCFFIGCLLGGLALSTLGDSSSLGRKKLLFLSCFAMSITALATIFANNIWI----Y  175 (521)
Q Consensus       101 ~~~-i~~~~~~~~~~~~~~~~~~~s~~~lg~~i~~~~~g~l~dr~~~Grr~~l~~~~~~~~~~~~~~~~~~~~~~----l  175 (521)
                      +|. +++++|++.++.    |++.+++.++..++++++|+++||  +|||++++++..+..++.++..+..+...    .
T Consensus        30 l~~~l~~~~g~s~~~~----g~i~s~~~l~~~i~~~~~G~l~Dr--~grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  103 (417)
T d1pv7a_          30 FPIWLHDINHISKSDT----GIIFAAISLFSLLFQPLFGLLSDK--LGLRKYLLWIITGMLVMFAPFFIFIFGPLLQYNI  103 (417)
T ss_dssp             HHHHHHHHHCCCHHHH----HHHHHHHHHHHHHTHHHHHHHHHH--HTTCTHHHHHHHHHHHTHHHHHHHTHHHHHHTTC
T ss_pred             HHHHHHHccCCCHHHH----HHHHHHHHHHHHHHHHHHHHHHHH--hCchHHHHHHHHHHHHHHHHHHHhhhhhhHHHHH
Confidence            344 677899999666    999999999999999999999999  99999999999999999998888766554    3


Q ss_pred             HHHHHHhhccchhhHhhhhhheeeeecC--cchhHHHHHHHHHHHHHHHHHHHHHHhhcCCchhHHHHHHHHHHHHHHhh
Q 039541          176 STIRFVAGFFRAPIMTSVIVLLSEMVSK--RWRGQVVIIGFTFFSFGLVSLPAVAYLSRGSSWKMLYVWTSIPSIVCCII  253 (521)
Q Consensus       176 ~~~r~l~G~~~g~~~~~~~~~i~~~~~~--~~rg~~~~~~~~~~~~G~~i~~~i~~~~~~~~wr~~f~~~~~~~~~~~~~  253 (521)
                      ++.+++.+.+.+...........+..++  +++.+..+........|..+++.++......+|+..+........+..++
T Consensus       104 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~  183 (417)
T d1pv7a_         104 LVGSIVGGIYLGFCFNAGAPAVEAFIEKVSRRSNFEFGRARMFGCVGWALGASIVGIMFTINNQFVFWLGSGCALILAVL  183 (417)
T ss_dssp             HHHHHHTTTTGGGGGTTHHHHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHhhhcccccccchhhcccccccchhhhhHHHHHHHhhhhccccccccccccccccccccccccchhhHHHHHHHH
Confidence            4556666666555555554444444432  34556677778888889999998865555567777777776666666657


Q ss_pred             hceeeecchhHHHhcCCHHHHHHHHHHHhhhcCCCCCCCccccccCCCCCccccCCCcccccccHHHHhccHHHHHHHHH
Q 039541          254 IYPFISESPRWLFIHGHEAEAMAVLKRLASRSNYQSDYGLESCCLSNMPPKAKNVIPKLDLYSSLKDLFNRKWALRRLLT  333 (521)
Q Consensus       254 ~~~~~~esp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~  333 (521)
                      ..+..+|+|+..   .+.++.                                ++.++........+.++.+..+.....
T Consensus       184 ~~~~~~~~~~~~---~~~~~~--------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~  228 (417)
T d1pv7a_         184 LFFAKTDAPSSA---TVANAV--------------------------------GANHSAFSLKLALELFRQPKLWFLSLY  228 (417)
T ss_dssp             HHSSCCCSCSSS---CSSHHH--------------------------------HSCCCCCCHHHHHHHTTSSHHHHHHHH
T ss_pred             HHHHhcccccch---hhhhhh--------------------------------hhhcccccccccccccccccccchhhh
Confidence            777777765321   111110                                000001111233444455444433333


Q ss_pred             HHHHHHHHHHHHHhHHh----hccCCCccH---HHHHHHHHHHhHhHHHHHHHHHhhcCCchHHHHHHHHHHHHHHHHHh
Q 039541          334 IMALAFGIGVVYFGLLL----GVGNLSFNI---YLSLAFNGLLDIPAYLLTFILIERWSRKSSILTFCILSGTCSAICVA  406 (521)
Q Consensus       334 ~~~~~~~~~~~~~~~~~----~~~~~~~~~---~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~i~~~~~~~  406 (521)
                      .................    ...+.+.+.   ........++..++..+.+++.||+++|+.+..+..+.+++.+.+.+
T Consensus       229 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~~~~~~~~~~~~~~~~~~~~~~~  308 (417)
T d1pv7a_         229 VIGVSCTYDVFDQQFANFFTSFFATGEQGTRVFGYVTTMGELLNASIMFFAPLIINRIGGKNALLLAGTIMSVRIIGSSF  308 (417)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHCHHHHHHHHHHHHHHHHHHHHT
T ss_pred             hHHHHHHHHhhhccccccccccccccccchhhhcccccccccccccchhhhhhhhcccccccchhhhHHHHHHhhhcccc
Confidence            33333332222222222    222222222   22234455677788889999999999999999999999998888877


Q ss_pred             cCCchHHHHHHHHHHHHHHHHHHHHHHHHhhccccCchhhhhhhHHHH-HhhhhhhhHHHHHHHh--hccchhHHHHHHH
Q 039541          407 IGDEQEVLQIGLELASFFSACVAFNVLLVFGTELFTTCVRNSTTSLVR-QAVNLGAAFSPVLISA--GRQNEFLSFGVFG  483 (521)
Q Consensus       407 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~-~~~~~g~~~~p~~~~~--~~~~~~~~~~~~~  483 (521)
                      .++.  +...+..++.+++.+...+...++..|.+|++.|+++.++.. ....+|.+++|.+.|+  ...++...+.+.+
T Consensus       309 ~~~~--~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~G~l~~~~g~~~~~~~~~  386 (417)
T d1pv7a_         309 ATSA--LEVVILKTLHMFEVPFLLVGCFKYITSQFEVRFSATIYLVCFCFFKQLAMIFMSVLAGNMYESIGFQGAYLVLG  386 (417)
T ss_dssp             CCCH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHSCGGGHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHCHHHHHHHHH
T ss_pred             cccc--chhhHHHHHHHHHHHHHHHHHHHHHHHHCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHH
Confidence            6655  667777888899999999999999999999999999999865 4567899999999986  3346777788888


Q ss_pred             HHHHHHhHhh-hccccC
Q 039541          484 LVVFCFGFFV-VFLPET  499 (521)
Q Consensus       484 ~~~~~~~~~~-~~~~~~  499 (521)
                      ++.++..++. +.++++
T Consensus       387 ~~~~~~~~~~~~~l~~~  403 (417)
T d1pv7a_         387 LVALGFTLISVFTLSGP  403 (417)
T ss_dssp             HHHHHHHHHHHHHSCCS
T ss_pred             HHHHHHHHHHHHhhcCC
Confidence            7777666554 444433

>d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]}

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: LacY-like proton/sugar symporter
domain: Lactose permease
species: Escherichia coli [TaxId: 562]

Probab=99.52  E-value=1.9e-14  Score=138.29  Aligned_cols=152  Identities=10%  Similarity=0.099  Sum_probs=132.3

Q ss_pred             eeeecceeeCCccccchhhHHHHHHHHHHhhhhhhhccccCCCCchHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHhh
Q 039541          104 IISDWSLECAGSSILSGLPSSCFFIGCLLGGLALSTLGDSSSLGRKKLLFLSCFAMSITALATIFANNIWIYSTIRFVAG  183 (521)
Q Consensus       104 i~~~~~~~~~~~~~~~~~~~s~~~lg~~i~~~~~g~l~dr~~~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G  183 (521)
                      ..++.+.+...    .+...+...++..++..+.+++.||  +|+|+.+.++.++.+++.++..+.++.+.+++..++.|
T Consensus       250 ~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~l~~r--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g  323 (417)
T d1pv7a_         250 FFATGEQGTRV----FGYVTTMGELLNASIMFFAPLIINR--IGGKNALLLAGTIMSVRIIGSSFATSALEVVILKTLHM  323 (417)
T ss_dssp             SSSCHHHHHHH----HHHHHHHHHHHHHHHHTTHHHHHHH--HCHHHHHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHH
T ss_pred             cccccccchhh----hcccccccccccccchhhhhhhhcc--cccccchhhhHHHHHHhhhccccccccchhhHHHHHHH
Confidence            33444445433    3888888999999999999999999  99999999999999999999999999999999999999


Q ss_pred             ccchhhHhhhhhheeeeecCcchhHHHHHH-HHHHHHHHHHHHHH-HHhhcCCchhHHHHHHHHHHHHHHhhhceeeecc
Q 039541          184 FFRAPIMTSVIVLLSEMVSKRWRGQVVIIG-FTFFSFGLVSLPAV-AYLSRGSSWKMLYVWTSIPSIVCCIIIYPFISES  261 (521)
Q Consensus       184 ~~~g~~~~~~~~~i~~~~~~~~rg~~~~~~-~~~~~~G~~i~~~i-~~~~~~~~wr~~f~~~~~~~~~~~~~~~~~~~es  261 (521)
                      ++.+...+...+++.|.+|+++|+++.++. +....+|.+++|.+ |++.+..||+..|++.+++.++..++..+.++++
T Consensus       324 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~G~l~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~  403 (417)
T d1pv7a_         324 FEVPFLLVGCFKYITSQFEVRFSATIYLVCFCFFKQLAMIFMSVLAGNMYESIGFQGAYLVLGLVALGFTLISVFTLSGP  403 (417)
T ss_dssp             HHHHHHHHHHHHHHHHHSCGGGHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHSCCS
T ss_pred             HHHHHHHHHHHHHHHHHCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHhhcCC
Confidence            999999999999999999999999999985 56778999999988 7888888999999999988888775666666543

>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]}

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: Glycerol-3-phosphate transporter
domain: Glycerol-3-phosphate transporter
species: Escherichia coli [TaxId: 562]

Probab=99.23  E-value=5.8e-11  Score=115.06  Aligned_cols=149  Identities=16%  Similarity=0.080  Sum_probs=115.4

Q ss_pred             ceeeecceeeCCccccchhhHHHHHHHHHHhhhhhhhccccCCCCchHHHHHHHHH---HHHHHHHHh--ccccHHHHHH
Q 039541          103 TIISDWSLECAGSSILSGLPSSCFFIGCLLGGLALSTLGDSSSLGRKKLLFLSCFA---MSITALATI--FANNIWIYST  177 (521)
Q Consensus       103 ~i~~~~~~~~~~~~~~~~~~~s~~~lg~~i~~~~~g~l~dr~~~Grr~~l~~~~~~---~~~~~~~~~--~~~~~~~l~~  177 (521)
                      .+.+.++.+..+.    ++..+...++..++.++.|++.||  ++||+........   ..++.++..  ...+.+..++
T Consensus       275 ~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~g~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  348 (447)
T d1pw4a_         275 YLKEVKHFALDKS----SWAYFLYEYAGIPGTLLCGWMSDK--VFRGNRGATGVFFMTLVTIATIVYWMNPAGNPTVDMI  348 (447)
T ss_dssp             HBTTBSCCCHHHH----HHHHHHHHHHHHHHHHHHHHHHHH--TSTTCHHHHHHHHHHHHHHHHHHTTSCCTTCHHHHHH
T ss_pred             hcccccccccchh----hhhhhcchhhhhhhhhhhhhhhhh--ccccccccccchhHHHHHHHHHHHHhcccccHHHHHH
Confidence            4556778887555    999999999999999999999999  9987644333322   222222222  2457788888


Q ss_pred             HHHHhhccchhhHhhhhhheeeeecCcchhHHHHHHHHHHHH-HHHHHHHH-HHhhcCCchhHHHHHHHHHHHHHHhhhc
Q 039541          178 IRFVAGFFRAPIMTSVIVLLSEMVSKRWRGQVVIIGFTFFSF-GLVSLPAV-AYLSRGSSWKMLYVWTSIPSIVCCIIIY  255 (521)
Q Consensus       178 ~r~l~G~~~g~~~~~~~~~i~~~~~~~~rg~~~~~~~~~~~~-G~~i~~~i-~~~~~~~~wr~~f~~~~~~~~~~~~~~~  255 (521)
                      .-++.|++.+...+....++.|.+|++.||++.|+.+....+ |.+++|.+ +.+.+..||+..|++.++..++..++..
T Consensus       349 ~~~~~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~~g~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~  428 (447)
T d1pw4a_         349 CMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFGWDGGFMVMIGGSILAVILLI  428 (447)
T ss_dssp             HHHHHHHHHTHHHHHHHHHHHHTSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHH
Confidence            889999999888999999999999999999999998877666 56778877 7888999999999988877777664444


Q ss_pred             ee
Q 039541          256 PF  257 (521)
Q Consensus       256 ~~  257 (521)
                      ++
T Consensus       429 ~~  430 (447)
T d1pw4a_         429 VV  430 (447)
T ss_dssp             HH
T ss_pred             HH
Confidence            43