Citrus Sinensis ID: 039561

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190
Protein Sequence
MLQQGLKIQHKFSRSFPTSTGALSSLESLHLHRNHLSGAIPLSLQNGTHFEVLDLRENAFIRDVPKWIKKSLLALFMMKGKAFEYSTNLNVLRVIELSKNNFLGEIAKGVTNPGASQTLNLSQNSFSRTIPESIGSMKSLESIDFSANHYLNLSNNNLTGEIPSGIQLQGFHQSRFAGSELCGAPFPKCL
Secondary Structure (PSIPRED)
cccHHccccccccccccHHHcccccccEEEcccccccccccccccccccccEEccccccccccccHHHHHHHHHHHcccccccccccccccccEEEcccccccccccHHHHccccccccccccccccccccccHHccccccEEcccccccccccccccEEcccccccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
cccEEEcccccccccccHHHcccccccEEEEccccccccccHHHcccccccEEEcccccccccccHHHcccEcccccccccccHHHcccccccEEEcccccccccccHHHcccccccEEEcccccccccccHHHccccccEEEEcccccEEEccccEEEEEccccccHHHccHHHccccccccccccccc
Coil and Loop (DISEMBL)
mlqqglkiqhkfsrsfptstgalsSLESLHLHRNhlsgaiplslqngthfevldlRENAFIRDVPKWIKKSLLALFMMKGKAFEYSTNLNVLRVIELSKNnflgeiakgvtnpgasqtlnlsqnsfsrtipesigsmkslesidFSANhylnlsnnnltgeipsgiqlqgfhqsrfagselcgapfpkcl
Flexible Loop (DISEMBL)
mlqqglkiqhkfsrsfptSTGALSSLESLHLHRNHLSGAIPLSLQNGTHFEVLDLRENAFIRDVPKWIKKSLLALFMMKGKAFEYSTNLNVLRVIELSKNNFLGEIAKGVTNPGASQTLNLSQNSFSRTIPESIGSMKSLESIDFSANHYLNLSNNNLTGEIPSGIQLQGFHQSRFAGSELCGAPFPKCL
Low Complexity Region (SEG)
MLQQGLKIQHKFSRSFPTSTGALSSLESLHLHRNHLSGAIPLSLQNGTHFEVLDLRENAFIRDVPKWIKKSLLALFMMKGKAFEYSTNLNVLRVIELSKNNFLGEIAKGVTNPGASQTLNLSQNSFSRTIPESIGSMKSLESIDFSANHYLNLSNNNLTGEIPSGIQLQGFHQSRFAGSELCGAPFPKCL
Disordered region (IsUnstruct)
****************************LHLHRNHLSGAIPLSLQNGTHFEVLDLRENAFIRDVPKWIKKSLLALFMMKGKAFEYSTNLNVLRVIELSKNNFLGEIAKGV********************************IDFSANHYLNLSNNNLTGEIPSGIQLQGFHQSRFA*************
Disordered Region (DISOPRED)
MLQQGLKIQHKFSRSFPTSTGALSSLESLHLHRNHLSGAIPLSLQNGTHFEVLDLRENAFIRDVPKWIKKSLLALFMMKGKAFEYSTNLNVLRVIELSKNNFLGEIAKGVTNPGASQTLNLSQNSFSRTIPESIGSMKSLESIDFSANHYLNLSNNNLTGEIPSGIQLQGFHQSRFAGSELCGAPFPKC*
Disordered Region (DISEMBL)
MLQQGLKIQHKFSRSFPTSTGALSSLESLHLHRNHLSGAIPLSLQNGTHFEVLDLRENAFIRDVPKWIKKSLLALFMMKGKAFEYSTNLNVLRVIELSKNNFLGEIAKGVTNPGASQTLNLSQNSFSRTIPESIGSMKSLESIDFSANHYLNLSNNNLTGEIPSGIQLQGFHQSRFAGSELCGAPFPKCL
Disordered Region (DISPRO)
MLQQGLKIQHKFSRSFPTSTGALSSLESLHLHRNHLSGAIPLSLQNGTHFEVLDLRENAFIRDVPKWIKKSLLALFMMKGKAFEYSTNLNVLRVIELSKNNFLGEIAKGVTNPGASQTLNLSQNSFSRTIPESIGSMKSLESIDFSANHYLNLSNNNLTGEIPSGIQLQGFHQSRFAGSELCGAPF****
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MLQQGLKIQHKFSRSFPTSTGALSSLESLHLHRNHLSGAIPLSLQNGTHFEVLDLRENAFIRDVPKWIKKSLLALFMMKGKAFEYSTNLNVLRVIELSKNNFLGEIAKGVTNPGASQTLNLSQNSFSRTIPESIGSMKSLESIDFSANHYLNLSNNNLTGEIPSGIQLQGFHQSRFAGSELCGAPFPKCL
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	190	2.2.26 [Sep-21-2011]
C0LGE4	882	Probable LRR receptor-lik	yes	no	0.889	0.191	0.331	4e-15
Q94C77	757	Receptor protein kinase-l	no	no	0.805	0.202	0.331	1e-14
Q9ZWC8	1166	Serine/threonine-protein	no	no	0.947	0.154	0.287	1e-13
Q9ZVR7	1008	Phytosulfokine receptor 1	no	no	0.910	0.171	0.304	2e-13
Q9ZUI0	980	Putative leucine-rich rep	no	no	0.794	0.154	0.329	2e-13
Q9SYQ8	980	Receptor protein kinase C	no	no	0.763	0.147	0.308	4e-13
Q9FIZ3	1252	LRR receptor-like serine/	no	no	0.889	0.134	0.322	5e-13
Q9M2Z1	1002	Leucine-rich repeat recep	no	no	0.810	0.153	0.314	6e-13
Q9LVP0	1102	Probable leucine-rich rep	no	no	0.915	0.157	0.338	7e-13
C0LGS2	1136	Probable LRR receptor-lik	no	no	0.836	0.139	0.312	1e-12

>sp|C0LGE4|Y1124_ARATH Probable LRR receptor-like serine/threonine-protein kinase At1g12460 OS=Arabidopsis thaliana GN=At1g12460 PE=1 SV=1

 Score = 81.3 bits (199), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 61/184 (33%), Positives = 94/184 (51%), Gaps = 15/184 (8%)

Query: 10  HKFSRSFPTSTGALSSLESLHLHRNHLSGAIPLSLQNGTHFEVLDLRENAFIRDVPKWIK 69
           +K + S P S G + SL  + L  N + G IP  + +    +VL+L     I +VP+ I 
Sbjct: 318 NKLNGSIPGSIGKMESLSVIRLGNNSIDGVIPRDIGSLEFLQVLNLHNLNLIGEVPEDIS 377

Query: 70  --KSLLALFM----MKGKAFEYSTNLNVLRVIELSKNNFLGEIAKGVTNPGASQTLNLSQ 123
             + LL L +    ++GK  +   NL  +++++L +N   G I   + N    Q L+LSQ
Sbjct: 378 NCRVLLELDVSGNDLEGKISKKLLNLTNIKILDLHRNRLNGSIPPELGNLSKVQFLDLSQ 437

Query: 124 NSFSRTIPESIGSMKSLESIDFSANHYLNLSNNNLTGEIPSGIQLQGFHQSRFAGSE-LC 182
           NS S  IP S+GS+ +L         + N+S NNL+G IP    +Q F  S F+ +  LC
Sbjct: 438 NSLSGPIPSSLGSLNTLT--------HFNVSYNNLSGVIPPVPMIQAFGSSAFSNNPFLC 489

Query: 183 GAPF 186
           G P 
Sbjct: 490 GDPL 493

Arabidopsis thaliana (taxid: 3702)
EC: 2EC: .EC: 7EC: .EC: 1EC: 1EC: .EC: 1

>sp|Q94C77|RPKL_ARATH Receptor protein kinase-like protein At4g34220 OS=Arabidopsis thaliana GN=At4g34220 PE=2 SV=1

 Score = 79.3 bits (194), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 64/193 (33%), Positives = 97/193 (50%), Gaps = 40/193 (20%)

Query: 12  FSRSFPTSTGALSSLESLHLHRNHLSGAIPLSLQNGTHFEVLDLRENAFIRDVPKWIKKS 71
           F+ S P S    + L+S+ L  N+LSG +P S+ + T+ ++L+L  NAF  ++P      
Sbjct: 115 FNGSLPDSVFNATELQSISLGSNNLSGDLPKSVNSVTNLQLLNLSANAFTGEIP------ 168

Query: 72  LLALFMMKGKAFEYSTNLNVLRVIELSKNNFLGEIAKGVTNPGASQTLNLSQNSFSRTIP 131
            L + ++K            L V+ LSKN F G+I  G     A+Q L+LS N  + ++P
Sbjct: 169 -LNISLLKN-----------LTVVSLSKNTFSGDIPSGFE---AAQILDLSSNLLNGSLP 213

Query: 132 ESIGSMKSLESID-----------------FSANHYLNLSNNNLTGEIPSGIQLQGFHQS 174
           + +G  KSL  ++                 F AN  ++LS NNLTG IPS + L      
Sbjct: 214 KDLGG-KSLHYLNLSHNKVLGEISPNFAEKFPANATVDLSFNNLTGPIPSSLSLLNQKAE 272

Query: 175 RFAGS-ELCGAPF 186
            F+G+ ELCG P 
Sbjct: 273 SFSGNQELCGKPL 285

Arabidopsis thaliana (taxid: 3702)

>sp|Q9ZWC8|BRL1_ARATH Serine/threonine-protein kinase BRI1-like 1 OS=Arabidopsis thaliana GN=BRL1 PE=1 SV=1

 Score = 76.3 bits (186), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 71/247 (28%), Positives = 96/247 (38%), Gaps = 67/247 (27%)

Query: 10  HKFSRSFPTSTGALSSLESLHLHRNHLSGAIPLSLQNGTHFEVLDLRENAFIRDVPKWI- 68
           ++ +   P+  G LS L  L L  N LSG +P  L N      LDL  N    D+P  + 
Sbjct: 509 NRLTGKIPSGIGNLSKLAILQLGNNSLSGNVPRQLGNCKSLIWLDLNSNNLTGDLPGELA 568

Query: 69  -KKSLLALFMMKGKAFEYSTN----------------------LNVLRVI---------- 95
            +  L+    + GK F +  N                      L  L ++          
Sbjct: 569 SQAGLVMPGSVSGKQFAFVRNEGGTDCRGAGGLVEFEGIRAERLERLPMVHSCPATRIYS 628

Query: 96  ----------------ELSKNNFLGEIAKGVTNPGASQTLNLSQNSFSRTIPESIGSMKS 139
                           ++S N   G I  G  N G  Q LNL  N  + TIP+S G +K+
Sbjct: 629 GMTMYTFSANGSMIYFDISYNAVSGFIPPGYGNMGYLQVLNLGHNRITGTIPDSFGGLKA 688

Query: 140 LESIDFSANHY----------------LNLSNNNLTGEIPSGIQLQGFHQSRFA-GSELC 182
           +  +D S N+                 L++SNNNLTG IP G QL  F  SR+A  S LC
Sbjct: 689 IGVLDLSHNNLQGYLPGSLGSLSFLSDLDVSNNNLTGPIPFGGQLTTFPVSRYANNSGLC 748

Query: 183 GAPFPKC 189
           G P   C
Sbjct: 749 GVPLRPC 755

Receptor with a serine/threonine-protein kinase activity. Regulates, in response to brassinosteroid binding, a signaling cascade involved in plant development. Binds brassinolide. May be involved in cell growth and vascular differentiation.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9ZVR7|PSKR1_ARATH Phytosulfokine receptor 1 OS=Arabidopsis thaliana GN=PSKR1 PE=2 SV=4

 Score = 75.9 bits (185), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 63/207 (30%), Positives = 91/207 (43%), Gaps = 34/207 (16%)

Query: 11  KFSRSFPTSTGALSSLESLHLHRNHLSGAIPLSLQNGTHFEVLDLRENAFIRDVPKWIKK 70
           + + S P    + + L+ L L  N L+GAIP  + +      LDL  N+F  ++PK + K
Sbjct: 426 RLTGSMPRWLSSSNELQLLDLSWNRLTGAIPSWIGDFKALFYLDLSNNSFTGEIPKSLTK 485

Query: 71  --SLLAL------------FMMK----GKAFEYSTNLNVLRVIELSKNNFLGEIAKGVTN 112
             SL +             F MK     +A +Y+        IEL  NN  G I +   N
Sbjct: 486 LESLTSRNISVNEPSPDFPFFMKRNESARALQYNQIFGFPPTIELGHNNLSGPIWEEFGN 545

Query: 113 PGASQTLNLSQNSFSRTIPESIGSMKSLESIDFSANHY----------------LNLSNN 156
                  +L  N+ S +IP S+  M SLE++D S N                   +++ N
Sbjct: 546 LKKLHVFDLKWNALSGSIPSSLSGMTSLEALDLSNNRLSGSIPVSLQQLSFLSKFSVAYN 605

Query: 157 NLTGEIPSGIQLQGFHQSRFAGSELCG 183
           NL+G IPSG Q Q F  S F  + LCG
Sbjct: 606 NLSGVIPSGGQFQTFPNSSFESNHLCG 632

Phytosulfokine receptor with a serine/threonine-protein kinase activity. Regulates, in response to phytosulfokine binding, a signaling cascade involved in plant cell differentiation, organogenesis, somatic embryogenesis, cellular proliferation and plant growth. Not involved in PSY perception.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9ZUI0|Y2241_ARATH Putative leucine-rich repeat receptor-like serine/threonine-protein kinase At2g24130 OS=Arabidopsis thaliana GN=At2g24130 PE=3 SV=1

 Score = 75.5 bits (184), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 55/167 (32%), Positives = 84/167 (50%), Gaps = 16/167 (9%)

Query: 9   QHKFSRSFPTSTGALSSLESLHLHRNHLSGAIPLSLQNGTHFEVLDLRENAFIRDVPKWI 68
           ++  S S P S G LS L  L L+ NHLSG +P SL    + E+LDL  N     +P  +
Sbjct: 378 RNNLSGSIPDSFGNLSQLRRLLLYGNHLSGTVPQSLGKCINLEILDLSHNNLTGTIPVEV 437

Query: 69  KKSL--LALFM------MKGKAFEYSTNLNVLRVIELSKNNFLGEIAKGVTNPGASQTLN 120
             +L  L L++      + G      + ++++  ++LS N   G+I   + +  A + LN
Sbjct: 438 VSNLRNLKLYLNLSSNHLSGPIPLELSKMDMVLSVDLSSNELSGKIPPQLGSCIALEHLN 497

Query: 121 LSQNSFSRTIPESIGSMKSLESIDFSANHYLNLSNNNLTGEIPSGIQ 167
           LS+N FS T+P S+G +  L+ +D S N         LTG IP   Q
Sbjct: 498 LSRNGFSSTLPSSLGQLPYLKELDVSFNR--------LTGAIPPSFQ 536

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9SYQ8|CLV1_ARATH Receptor protein kinase CLAVATA1 OS=Arabidopsis thaliana GN=CLV1 PE=1 SV=3

 Score = 74.3 bits (181), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 53/172 (30%), Positives = 80/172 (46%), Gaps = 27/172 (15%)

Query: 12  FSRSFPTSTGALSSLESLHLHRNHLSGAIPLSLQNGTHFEVLDLRENAFIRDVPKWIKKS 71
           FS   P + G   +L++L L RN   G IP  +    H   ++   N     +P  I + 
Sbjct: 468 FSGEIPPAIGNFPNLQTLFLDRNRFRGNIPREIFELKHLSRINTSANNITGGIPDSISRC 527

Query: 72  LLALFMMKGKAFEYSTNLNVLRVIELSKNNFLGEIAKGVTNPGASQTLNLSQNSFSRTIP 131
                             + L  ++LS+N   GEI KG+ N     TLN+S N  + +IP
Sbjct: 528 ------------------STLISVDLSRNRINGEIPKGINNVKNLGTLNISGNQLTGSIP 569

Query: 132 ESIGSMKSLESIDFSANHYLNLSNNNLTGEIPSGIQLQGFHQSRFAG-SELC 182
             IG+M SL ++D        LS N+L+G +P G Q   F+++ FAG + LC
Sbjct: 570 TGIGNMTSLTTLD--------LSFNDLSGRVPLGGQFLVFNETSFAGNTYLC 613

Involved in the detection of CLV3 and CLV3-like peptides, that act as extracellular signals regulating meristem maintenance. Acts with CLV3 as a ligand-receptor pair in a signal transduction pathway coordinating growth between adjacent meristematic regions and controlling the balance between meristem cell proliferation and differentiation.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9FIZ3|GSO2_ARATH LRR receptor-like serine/threonine-protein kinase GSO2 OS=Arabidopsis thaliana GN=GSO2 PE=2 SV=2

 Score = 73.9 bits (180), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 61/189 (32%), Positives = 89/189 (47%), Gaps = 20/189 (10%)

Query: 10  HKFSRSFPTSTGALSSLESLHLHRNHLSGAIPLSLQNGTHFEVLDLRENAFIRDVPKWIK 69
           +KF  S PT   +L+++ +L L  N L+G+IP  + N      L+L EN     +P  I 
Sbjct: 682 NKFVGSLPTEIFSLTNILTLFLDGNSLNGSIPQEIGNLQALNALNLEENQLSGPLPSTIG 741

Query: 70  KSLLALFMMK----GKAFEYSTNLNVLR----VIELSKNNFLGEIAKGVTNPGASQTLNL 121
           K L  LF ++        E    +  L+     ++LS NNF G I   ++     ++L+L
Sbjct: 742 K-LSKLFELRLSRNALTGEIPVEIGQLQDLQSALDLSYNNFTGRIPSTISTLPKLESLDL 800

Query: 122 SQNSFSRTIPESIGSMKSLESIDFSANHYLNLSNNNLTGEIPSGIQLQGFHQSRFAGSE- 180
           S N     +P  IG MKSL         YLNLS NNL G++    Q   +    F G+  
Sbjct: 801 SHNQLVGEVPGQIGDMKSL--------GYLNLSYNNLEGKLKK--QFSRWQADAFVGNAG 850

Query: 181 LCGAPFPKC 189
           LCG+P   C
Sbjct: 851 LCGSPLSHC 859

Together with GSO1, receptor-like serine/threonine-kinase required during the development of the epidermal surface in embryos and cotyledons. Involved in the nuclear division phase of megagametogenesis.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9M2Z1|BAME2_ARATH Leucine-rich repeat receptor-like serine/threonine-protein kinase BAM2 OS=Arabidopsis thaliana GN=BAM2 PE=1 SV=1

 Score = 73.9 bits (180), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 57/181 (31%), Positives = 80/181 (44%), Gaps = 27/181 (14%)

Query: 10  HKFSRSFPTSTGALSSLESLHLHRNHLSGAIPLSLQNGTHFEVLDLRENAFIRDVPKWIK 69
           ++ S S P + G LS ++ L L  N  SG+IP  +        LD   N F   +   I 
Sbjct: 466 NQLSGSLPAAIGNLSGVQKLLLDGNKFSGSIPPEIGRLQQLSKLDFSHNLFSGRIAPEIS 525

Query: 70  KSLLALFMMKGKAFEYSTNLNVLRVIELSKNNFLGEIAKGVTNPGASQTLNLSQNSFSRT 129
           +  L  F                  ++LS+N   G+I   +T       LNLS+N    +
Sbjct: 526 RCKLLTF------------------VDLSRNELSGDIPNELTGMKILNYLNLSRNHLVGS 567

Query: 130 IPESIGSMKSLESIDFSANHYLNLSNNNLTGEIPSGIQLQGFHQSRFAG-SELCGAPFPK 188
           IP +I SM+SL S+DFS         NNL+G +PS  Q   F+ + F G S LCG     
Sbjct: 568 IPVTIASMQSLTSVDFSY--------NNLSGLVPSTGQFSYFNYTSFVGNSHLCGPYLGP 619

Query: 189 C 189
           C
Sbjct: 620 C 620

Necessary for male gametophyte development, as well as ovule specification and function. Involved in cell-cell communication process required during early anther development, and regulating cell division and differentiation to organize cell layers. Required for the development of high-ordered vascular strands within the leaf and a correlated control of leaf shape, size and symmetry. May regulate the CLV1-dependent CLV3-mediated signaling in meristems maintenance.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9LVP0|Y5639_ARATH Probable leucine-rich repeat receptor-like protein kinase At5g63930 OS=Arabidopsis thaliana GN=At5g63930 PE=1 SV=1

 Score = 73.6 bits (179), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 67/198 (33%), Positives = 87/198 (43%), Gaps = 24/198 (12%)

Query: 16  FPTSTGALSSLESLHLHRNHLSGAIPLSLQNGTHFEVLDLRENAFIRDVPKWIKK----S 71
            P   G L SLE L+L+RN L+G IP  + N ++   +D  ENA   ++P  +       
Sbjct: 281 IPKELGDLQSLEFLYLYRNGLNGTIPREIGNLSYAIEIDFSENALTGEIPLELGNIEGLE 340

Query: 72  LLALF--MMKGKAFEYSTNLNVLRVIELSKNNFLGEIAKGVTNPGASQTLNLSQNSFSRT 129
           LL LF   + G      + L  L  ++LS N   G I  G         L L QNS S T
Sbjct: 341 LLYLFENQLTGTIPVELSTLKNLSKLDLSINALTGPIPLGFQYLRGLFMLQLFQNSLSGT 400

Query: 130 IPESIGSMKSLESIDFSANH----------------YLNLSNNNLTGEIPSGI-QLQGFH 172
           IP  +G    L  +D S NH                 LNL  NNL+G IP+GI   +   
Sbjct: 401 IPPKLGWYSDLWVLDMSDNHLSGRIPSYLCLHSNMIILNLGTNNLSGNIPTGITTCKTLV 460

Query: 173 QSRFAGSELCGAPFPKCL 190
           Q R A + L G  FP  L
Sbjct: 461 QLRLARNNLVGR-FPSNL 477

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|C0LGS2|Y4361_ARATH Probable LRR receptor-like serine/threonine-protein kinase At4g36180 OS=Arabidopsis thaliana GN=At4g36180 PE=1 SV=1

 Score = 73.2 bits (178), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 61/195 (31%), Positives = 93/195 (47%), Gaps = 36/195 (18%)

Query: 10  HKFSRSFPTSTGALSSLESLHLHRNHLSGAIPLSLQNGTHFEVLDLRENAFIRDVPKWIK 69
           + FS   P + G L  L SL L  NH+SG+IP  + N +  EVL+LR N  +  +P  + 
Sbjct: 558 NSFSGEIPQTFGFLRLLVSLSLSDNHISGSIPPEIGNCSALEVLELRSNRLMGHIPADLS 617

Query: 70  KSLLALFMMKGKAFEYSTNLNVLRVIELSKNNFLGEIAKGVTNPGASQTLNLSQNSFSRT 129
           +                  L  L+V++L +NN  GEI   ++   +  +L+L  N  S  
Sbjct: 618 R------------------LPRLKVLDLGQNNLSGEIPPEISQSSSLNSLSLDHNHLSGV 659

Query: 130 IPESIGSMKSLESIDFSANH-----------------YLNLSNNNLTGEIPSGIQLQGFH 172
           IP S   + +L  +D S N+                 Y N+S+NNL GEIP+ +  +  +
Sbjct: 660 IPGSFSGLSNLTKMDLSVNNLTGEIPASLALISSNLVYFNVSSNNLKGEIPASLGSRINN 719

Query: 173 QSRFAG-SELCGAPF 186
            S F+G +ELCG P 
Sbjct: 720 TSEFSGNTELCGKPL 734

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	190
224072885	1024	predicted protein [Populus trichocarpa]	0.942	0.174	0.364	3e-27
255543977	1075	serine/threonine-protein kinase bri1, pu	0.936	0.165	0.380	1e-24
147787223	874	hypothetical protein VITISV_036436 [Viti	0.931	0.202	0.372	2e-24
209970609	1041	AL07-2p [Malus floribunda]	0.9	0.164	0.378	3e-24
209970607	1045	M18S-3Ap [Malus floribunda]	0.942	0.171	0.381	5e-24
350284739	978	receptor-like protein [Malus x domestica	0.905	0.175	0.333	6e-24
209970631	962	HcrVf4 [Malus floribunda]	0.931	0.183	0.395	7e-24
14330718	915	HcrVf3 protein [Malus floribunda]	0.931	0.193	0.395	7e-24
350284753	915	receptor-like protein [Malus micromalus]	0.931	0.193	0.395	8e-24
350284759	980	receptor-like protein [Malus micromalus]	0.931	0.180	0.390	2e-23

>gi|224072885|ref|XP_002303927.1| predicted protein [Populus trichocarpa] gi|222841359|gb|EEE78906.1| predicted protein [Populus trichocarpa]

 Score =  126 bits (317), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 97/266 (36%), Positives = 122/266 (45%), Gaps = 87/266 (32%)

Query: 10  HKFSRSFPTSTGALSSLESLHLHRNHLSGAIPLSLQN----------------------G 47
           +K S + P S GALS LESLH+  + LSG +P+SL+N                      G
Sbjct: 688 NKLSGNIPDSIGALSLLESLHIRNSSLSGKLPISLKNCTKLITLDVAENELVGSMPAWIG 747

Query: 48  THFE---VLDLRENAFIRDVPK-------------------WI------KKSLLA----- 74
             F    VL++R N F   +P+                   W       K S +A     
Sbjct: 748 KRFSSMVVLNMRANKFHGRIPRELCNLASLQILDLAHNRLSWSIPTCFNKLSAMATRNDS 807

Query: 75  ----------------LFMMKGKAFEYSTNLNVLRVIELSKNNFLGEIAKGVTNPGASQT 118
                           L +MKGK  EYST L  +R I+LS N   GEI + VT     Q+
Sbjct: 808 LGKIYLDSGSSTFDNVLLVMKGKVVEYSTILKFVRSIDLSSNALCGEIPEEVTRLSELQS 867

Query: 119 LNLSQNSFSRTIPESIGSMKSLESIDFSANH----------------YLNLSNNNLTGEI 162
           LNLSQNS +  IPE IGS++ LES+DFS N                 +LNLS+N L G I
Sbjct: 868 LNLSQNSLTGRIPEGIGSLRYLESMDFSVNQLSGEIPQSMSDLTFLSHLNLSDNRLRGRI 927

Query: 163 PSGIQLQGFHQSRFAGSELCGAPFPK 188
           PSG QLQ F  S F+G+ELCG P  K
Sbjct: 928 PSGTQLQSFGPSSFSGNELCGPPLSK 953

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255543977|ref|XP_002513051.1| serine/threonine-protein kinase bri1, putative [Ricinus communis] gi|223548062|gb|EEF49554.1| serine/threonine-protein kinase bri1, putative [Ricinus communis]

 Score =  118 bits (295), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 75/197 (38%), Positives = 105/197 (53%), Gaps = 19/197 (9%)

Query: 10  HKFSRSFPTSTGALSSLESLHLHRNHLSGAIPLSLQNGTHFEVLDLRENAFIRDVPKWIK 69
           +K     P     ++SL+ L L  N+ S  IP    N +    ++    +   D      
Sbjct: 802 NKLHGQIPEEICRMASLQILDLADNNFSSMIPSCFSNFSGMVKVNDSFGSLTFDQSNVGP 861

Query: 70  KSLL---ALFMMKGKAFEYSTNLNVLRVIELSKNNFLGEIAKGVTNPGASQTLNLSQNSF 126
             +L   A+ ++KG+  EYST L  ++ I+LS NN  GEI   +T+    Q+L+ SQNS 
Sbjct: 862 SPILIDSAILVIKGRVAEYSTILGFVKAIDLSNNNLSGEIPMNITSLVGLQSLSFSQNSL 921

Query: 127 SRTIPESIGSMKSLESIDFSANH----------------YLNLSNNNLTGEIPSGIQLQG 170
           +  IP+ IG+M+SLESIDFS NH                +LNLSNN LTG+IPSG QL+G
Sbjct: 922 TGRIPKDIGAMQSLESIDFSQNHLFGEIPESISSLTFLSHLNLSNNKLTGKIPSGTQLRG 981

Query: 171 FHQSRFAGSELCGAPFP 187
           F  S F  ++LCG P P
Sbjct: 982 FDPSSFMDNDLCGPPLP 998

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147787223|emb|CAN73482.1| hypothetical protein VITISV_036436 [Vitis vinifera]

 Score =  117 bits (294), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 89/239 (37%), Positives = 110/239 (46%), Gaps = 62/239 (25%)

Query: 9   QHKFSRSFPTSTGALSSLESLHLHRNHLSGAIPLSLQNGTHFEVLDLRENAFIRDVPKWI 68
            ++F+   PTS G+L  L SLHLH N+LSG  P SL+N TH  ++DL EN F   VP WI
Sbjct: 561 DNEFTGPVPTSMGSLRHLFSLHLHNNYLSGMFP-SLENCTHLMIIDLSENGFSGSVPMWI 619

Query: 69  KKSL--------------------------------------------LALFMMKGKAFE 84
             +L                                             A   +K    E
Sbjct: 620 GNNLYNLVVLALSSNNFNGSIPLELCHLDYLQILDLGNNGLSGNIPRCFAWLAVKRIRNE 679

Query: 85  YSTNLNVLRVIELSKNNFLGEIAKGVTNPGASQTLNLSQNSFSRTIPESIGSMKSLESID 144
           Y+  L +L  I+LS N   GEI + VT   +   LNLS+N     IP  IGSMKSLES+D
Sbjct: 680 YNYTLGLLTGIDLSSNKLSGEIPEEVTALHSLIFLNLSENHLEGKIPIEIGSMKSLESLD 739

Query: 145 FSANH----------------YLNLSNNNLTGEIPSGIQLQGFHQSRFAGS-ELCGAPF 186
            S N                 YLNLS NNL+G+IPSG Q+QGF    F G+ EL G P 
Sbjct: 740 LSMNKLSGVIPQSISSISFLGYLNLSFNNLSGKIPSGTQIQGFSPLSFIGNHELYGPPL 798

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|209970609|gb|ACJ03067.1| AL07-2p [Malus floribunda]

 Score =  117 bits (292), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 78/206 (37%), Positives = 104/206 (50%), Gaps = 35/206 (16%)

Query: 10  HKFSRSFPTSTGALSSLESLHLHRNHLSGAIPLSLQN--------GTHF---EVLDLREN 58
           ++F    P+    L SL+ L L RN LSG IP    N        G+ +    V  + + 
Sbjct: 767 NEFEGDIPSEICYLKSLQILDLARNKLSGTIPRCFHNLSAMADLSGSFWFPQYVTGVSDE 826

Query: 59  AFIRDVPKWIKKSLLALFMMKGKAFEYSTNLNVLRVIELSKNNFLGEIAKGVTNPGASQT 118
            F   +P ++      + + KGK  EY+  L  ++ ++LS N   GEI + +T+  A Q+
Sbjct: 827 GFT--IPDYV------VLVTKGKEMEYTKILKFVKFMDLSCNFMYGEIPEELTDLLALQS 878

Query: 119 LNLSQNSFSRTIPESIGSMKSLESIDFSANH----------------YLNLSNNNLTGEI 162
           LNLS N F+  IP  IG+M  LES+DFS N                 YLNLSNNNL G I
Sbjct: 879 LNLSNNRFTGRIPSKIGNMAQLESLDFSMNQLDGQIPPSMTILTFLSYLNLSNNNLRGRI 938

Query: 163 PSGIQLQGFHQSRFAGSELCGAPFPK 188
           P   QLQ   QS F G+ELCGAP  K
Sbjct: 939 PESTQLQSLDQSSFVGNELCGAPLNK 964

Source: Malus floribunda

Species: Malus floribunda

Genus: Malus

Family: Rosaceae

Order: Rosales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|209970607|gb|ACJ03066.1| M18S-3Ap [Malus floribunda]

 Score =  116 bits (290), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 76/199 (38%), Positives = 100/199 (50%), Gaps = 20/199 (10%)

Query: 10  HKFSRSFPTSTGALSSLESLHLHRNHLSGAIPLSLQNGTHFEVLDLRENAFIRDVPKWIK 69
           +KF    P     L+SL+ L L  N LSG IP    N +         +A +  +   I 
Sbjct: 770 NKFEGDIPNEVCYLTSLQILDLAHNKLSGMIPRCFHNLSAMADFSESRDASVYVILNGIS 829

Query: 70  KSL----LALFMMKGKAFEYSTNLNVLRVIELSKNNFLGEIAKGVTNPGASQTLNLSQNS 125
             L     A+ + KG+  EY   L  ++ ++LS N   GEI + +T+  A ++LNLS N 
Sbjct: 830 VPLSVTAKAILVTKGREMEYGKILKFVKFMDLSCNFMYGEIPEELTDLLALKSLNLSNNH 889

Query: 126 FSRTIPESIGSMKSLESIDFSANH----------------YLNLSNNNLTGEIPSGIQLQ 169
           F+  IP  IG+M  LES+DFS N                 +LNLSNNNLTG IP   QLQ
Sbjct: 890 FTGRIPSKIGNMAQLESLDFSMNQLDGEIPQSMTNLTFLSHLNLSNNNLTGRIPKSTQLQ 949

Query: 170 GFHQSRFAGSELCGAPFPK 188
              QS F G+ELCGAP  K
Sbjct: 950 SLDQSSFVGNELCGAPLNK 968

Source: Malus floribunda

Species: Malus floribunda

Genus: Malus

Family: Rosaceae

Order: Rosales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|350284739|gb|AEQ27741.1| receptor-like protein [Malus x domestica]

 Score =  115 bits (289), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 87/261 (33%), Positives = 110/261 (42%), Gaps = 89/261 (34%)

Query: 17  PTSTGALSSLESLHLHRNHLSGAIPLSLQNGTHFEVLDLRENAFIRDVPKWIKK--SLLA 74
           P S G L  ++SL+L  NHL G +P SLQN T   V+DL EN F   +P WI K  SLL 
Sbjct: 641 PMSMGYLLYIQSLYLRNNHLYGELPHSLQNCTSLSVVDLSENGFSGSIPTWIGKSLSLLN 700

Query: 75  LFMMKGKAFE--------YSTNLNVLRVI-----------------------ELSKNNFL 103
           + +++   FE        Y T+L +L +                          S  ++ 
Sbjct: 701 VLILRSNKFEGDIPNEVCYLTSLQILDLAHNKLSGMIPRCFHNLSALANFSESFSPTSYW 760

Query: 104 GEIAKGVTNPG----------------------------------------ASQTLNLSQ 123
           GE+A G+T                                           A Q+LNLS 
Sbjct: 761 GEVASGLTENAILVTKGIEMEYSTILGFVKGMDLSCNFMYGEIPEELTGLLALQSLNLSN 820

Query: 124 NSFSRTIPESIGSMKSLESIDFSANH----------------YLNLSNNNLTGEIPSGIQ 167
           N F+  IP  IG+M  LES+DFS N                 +LNLS NNLTG IP   Q
Sbjct: 821 NRFTGRIPSKIGNMAQLESLDFSMNQLDGEIPPSMTILTFLSHLNLSYNNLTGRIPESTQ 880

Query: 168 LQGFHQSRFAGSELCGAPFPK 188
           LQ   QS F G+ELCGAP  K
Sbjct: 881 LQSLDQSSFVGNELCGAPLNK 901

Source: Malus x domestica

Species: Malus x domestica

Genus: Malus

Family: Rosaceae

Order: Rosales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|209970631|gb|ACJ03074.1| HcrVf4 [Malus floribunda]

 Score =  115 bits (289), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 78/197 (39%), Positives = 100/197 (50%), Gaps = 20/197 (10%)

Query: 10  HKFSRSFPTSTGALSSLESLHLHRNHLSGAIPLSLQNGTHFEVLDLRENAFIRDV--PKW 67
           +KF    P     L SL+ L L  N LSG IP    N +     D  E+ +        W
Sbjct: 691 NKFEGDIPNEVCYLKSLQILDLAHNKLSGMIPRCFHNLSALA--DFSESFYPTSYWGTNW 748

Query: 68  IKKSLLALFMMKGKAFEYSTNLNVLRVIELSKNNFLGEIAKGVTNPGASQTLNLSQNSFS 127
            + S  A+ + KG   EYS  L  ++V++LS N   GEI + +T   A Q+LNLS N F+
Sbjct: 749 SELSENAILVTKGIEMEYSKILGFVKVMDLSCNFMYGEIPEELTGLLALQSLNLSNNRFT 808

Query: 128 RTIPESIGSMKSLESIDFSANH----------------YLNLSNNNLTGEIPSGIQLQGF 171
             IP +IG+M  LES+DFS N                 +LNLS NNLTG IP   QLQ  
Sbjct: 809 GRIPSNIGNMAWLESLDFSMNQLDGEIPPSMTNLTFLSHLNLSYNNLTGRIPESTQLQSL 868

Query: 172 HQSRFAGSELCGAPFPK 188
            QS F G++LCGAP  K
Sbjct: 869 DQSSFVGNKLCGAPLNK 885

Source: Malus floribunda

Species: Malus floribunda

Genus: Malus

Family: Rosaceae

Order: Rosales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|14330718|emb|CAC40827.1| HcrVf3 protein [Malus floribunda]

 Score =  115 bits (289), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 78/197 (39%), Positives = 101/197 (51%), Gaps = 20/197 (10%)

Query: 10  HKFSRSFPTSTGALSSLESLHLHRNHLSGAIPLSLQNGTHFEVLDLRENAFIRDV--PKW 67
           +KF    P     L SL+ L L  N LSG IP    N +   + D  E+ +        W
Sbjct: 644 NKFEGDIPNEVCYLKSLQILDLAHNKLSGMIPRCFHNLS--ALADFSESFYPTSYWGTNW 701

Query: 68  IKKSLLALFMMKGKAFEYSTNLNVLRVIELSKNNFLGEIAKGVTNPGASQTLNLSQNSFS 127
            + S  A+ + KG   EYS  L  ++V++LS N   GEI + +T   A Q+LNLS N F+
Sbjct: 702 SELSENAILVTKGIEMEYSKILGFVKVMDLSCNFMYGEIPEELTGLLALQSLNLSNNRFT 761

Query: 128 RTIPESIGSMKSLESIDFSANH----------------YLNLSNNNLTGEIPSGIQLQGF 171
             IP +IG+M  LES+DFS N                 +LNLS NNLTG IP   QLQ  
Sbjct: 762 GRIPSNIGNMAWLESLDFSMNQLDGEIPPSMTNLTFLSHLNLSYNNLTGRIPESTQLQSL 821

Query: 172 HQSRFAGSELCGAPFPK 188
            QS F G++LCGAP  K
Sbjct: 822 DQSSFVGNKLCGAPLNK 838

Source: Malus floribunda

Species: Malus floribunda

Genus: Malus

Family: Rosaceae

Order: Rosales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|350284753|gb|AEQ27748.1| receptor-like protein [Malus micromalus]

 Score =  115 bits (288), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 78/197 (39%), Positives = 101/197 (51%), Gaps = 20/197 (10%)

Query: 10  HKFSRSFPTSTGALSSLESLHLHRNHLSGAIPLSLQNGTHFEVLDLRENAFIRDV--PKW 67
           +KF    P     L SL+ L L  N LSG IP    N +   + D  E+ +        W
Sbjct: 644 NKFEGDIPNEVCYLKSLQILDLAHNKLSGMIPRCFHNLS--ALADFSESFYPTSYWGTNW 701

Query: 68  IKKSLLALFMMKGKAFEYSTNLNVLRVIELSKNNFLGEIAKGVTNPGASQTLNLSQNSFS 127
            + S  A+ + KG   EYS  L  ++V++LS N   GEI + +T   A Q+LNLS N F+
Sbjct: 702 SELSENAILVTKGIEMEYSKILGFVKVMDLSCNFMYGEIPEELTGLLALQSLNLSNNRFT 761

Query: 128 RTIPESIGSMKSLESIDFSANH----------------YLNLSNNNLTGEIPSGIQLQGF 171
             IP +IG+M  LES+DFS N                 +LNLS NNLTG IP   QLQ  
Sbjct: 762 GRIPSNIGNMAWLESLDFSMNQLDGEIPPSMTNLTFLSHLNLSYNNLTGRIPESTQLQSL 821

Query: 172 HQSRFAGSELCGAPFPK 188
            QS F G++LCGAP  K
Sbjct: 822 DQSSFVGNKLCGAPLNK 838

Source: Malus micromalus

Species: Malus micromalus

Genus: Malus

Family: Rosaceae

Order: Rosales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|350284759|gb|AEQ27751.1| receptor-like protein [Malus micromalus]

 Score =  114 bits (286), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 77/197 (39%), Positives = 101/197 (51%), Gaps = 20/197 (10%)

Query: 10  HKFSRSFPTSTGALSSLESLHLHRNHLSGAIPLSLQNGTHFEVLDLRENAFIRDV--PKW 67
           +KF    P     L SL+ L L  N LSG IP    N +   + D  E+ +        W
Sbjct: 709 NKFEGDIPNEVCYLKSLQILDLAHNKLSGMIPRCFHNLS--ALADFSESFYPTSYWGTNW 766

Query: 68  IKKSLLALFMMKGKAFEYSTNLNVLRVIELSKNNFLGEIAKGVTNPGASQTLNLSQNSFS 127
            + S  A+ + KG   EYS  L  ++V++LS N   GEI + +T   A Q+LNLS N F+
Sbjct: 767 SELSENAILVTKGIEMEYSRILGFVKVMDLSCNFMYGEIPEELTGLLALQSLNLSNNRFT 826

Query: 128 RTIPESIGSMKSLESIDFSANH----------------YLNLSNNNLTGEIPSGIQLQGF 171
             IP +IG+M  LE++DFS N                 +LNLS NNLTG IP   QLQ  
Sbjct: 827 GRIPSNIGNMAWLETLDFSMNQLDGEIPPSMTNLTFLSHLNLSYNNLTGRIPESTQLQSL 886

Query: 172 HQSRFAGSELCGAPFPK 188
            QS F G++LCGAP  K
Sbjct: 887 DQSSFVGNKLCGAPLNK 903

Source: Malus micromalus

Species: Malus micromalus

Genus: Malus

Family: Rosaceae

Order: Rosales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	190
TAIR|locus:2129246	891	RLP50 "receptor like protein 5	0.778	0.166	0.310	1e-10
TAIR|locus:2034725	882	AT1G12460 [Arabidopsis thalian	0.884	0.190	0.338	2.2e-16
TAIR|locus:2119535	725	RLP48 "receptor like protein 4	0.489	0.128	0.398	1.2e-15
TAIR|locus:2181042	967	AT5G01890 [Arabidopsis thalian	0.868	0.170	0.314	1.6e-14
TAIR|locus:2046357	890	RLP23 "receptor like protein 2	0.526	0.112	0.385	1.7e-14
TAIR|locus:2122239	1136	AT4G36180 [Arabidopsis thalian	0.789	0.132	0.341	4.2e-14
TAIR|locus:2156349	1252	GSO2 "GASSHO 2" [Arabidopsis t	0.910	0.138	0.329	6.1e-14
TAIR|locus:2124296	757	AT4G34220 [Arabidopsis thalian	0.873	0.219	0.314	6.3e-14
TAIR|locus:2120412	992	BAM3 "BARELY ANY MERISTEM 3" [	0.915	0.175	0.329	7.3e-14
TAIR|locus:2090754	711	RLP43 "receptor like protein 4	0.768	0.205	0.349	7.4e-14

TAIR|locus:2129246 RLP50 "receptor like protein 50" [Arabidopsis thaliana (taxid:3702)]

 Score = 162 (62.1 bits), Expect = 1.0e-10, P = 1.0e-10
 Identities = 49/158 (31%), Positives = 79/158 (50%)

Query:    12 FSRSFPTSTGALSSLESLHLHRNHLSGAIPLSLQNGTHFEVLDLRENAFIRDVPKWIKKS 71
             F+   P S G L SL  L+LHR +  G IP SL + ++   LD+ +N F  + P     S
Sbjct:   214 FTGELPDSMGNLKSLRVLNLHRCNFFGKIPTSLGSLSNLTDLDISKNEFTSEGPD----S 269

Query:    72 LLALFMMKGKAFEYST-NLNVLRVIELSKNNFLGEIAKGVTNPGASQTLNLSQNSFSRTI 130
             + +L  +    F+    NL+ L  ++LS N F   +   +++    +  ++S NSFS TI
Sbjct:   270 MSSLNRLTD--FQLMLLNLSSLTNVDLSSNQFKAMLPSNMSSLSKLEAFDISGNSFSGTI 327

Query:   131 PESIGSMKSLESIDFSANHYLN-LSNNNLTGEIPSGIQ 167
             P S+  + SL  +D   N +   L   N++   PS +Q
Sbjct:   328 PSSLFMLPSLIKLDLGTNDFSGPLKIGNISS--PSNLQ 363

GO:0005886 "plasma membrane" evidence=ISM

GO:0006952 "defense response" evidence=ISS

GO:0016301 "kinase activity" evidence=ISS

GO:0007165 "signal transduction" evidence=IC

TAIR|locus:2034725 AT1G12460 [Arabidopsis thaliana (taxid:3702)]

 Score = 215 (80.7 bits), Expect = 2.2e-16, P = 2.2e-16
 Identities = 62/183 (33%), Positives = 95/183 (51%)

Query:    10 HKFSRSFPTSTGALSSLESLHLHRNHLSGAIPLSLQNGTHFEVLDLRENAFIRDVPKWIK 69
             +K + S P S G + SL  + L  N + G IP  + +    +VL+L     I +VP+ I 
Sbjct:   318 NKLNGSIPGSIGKMESLSVIRLGNNSIDGVIPRDIGSLEFLQVLNLHNLNLIGEVPEDIS 377

Query:    70 --KSLLALFM----MKGKAFEYSTNLNVLRVIELSKNNFLGEIAKGVTNPGASQTLNLSQ 123
               + LL L +    ++GK  +   NL  +++++L +N   G I   + N    Q L+LSQ
Sbjct:   378 NCRVLLELDVSGNDLEGKISKKLLNLTNIKILDLHRNRLNGSIPPELGNLSKVQFLDLSQ 437

Query:   124 NSFSRTIPESIGSMKSLESIDFSANHYLNLSNNNLTGEIPSGIQLQGFHQSRFAGSE-LC 182
             NS S  IP S+GS+ +L        H+ N+S NNL+G IP    +Q F  S F+ +  LC
Sbjct:   438 NSLSGPIPSSLGSLNTL-------THF-NVSYNNLSGVIPPVPMIQAFGSSAFSNNPFLC 489

Query:   183 GAP 185
             G P
Sbjct:   490 GDP 492

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=ISS

GO:0005524 "ATP binding" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM;IDA

GO:0006468 "protein phosphorylation" evidence=IEA;ISS

GO:0007169 "transmembrane receptor protein tyrosine kinase signaling pathway" evidence=ISS

GO:0016301 "kinase activity" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0002237 "response to molecule of bacterial origin" evidence=RCA

GO:0007165 "signal transduction" evidence=RCA

GO:0010103 "stomatal complex morphogenesis" evidence=RCA

GO:0048443 "stamen development" evidence=RCA

TAIR|locus:2119535 RLP48 "receptor like protein 48" [Arabidopsis thaliana (taxid:3702)]

 Score = 155 (59.6 bits), Expect = 1.2e-15, Sum P(2) = 1.2e-15
 Identities = 41/103 (39%), Positives = 55/103 (53%)

Query:    89 LNVLRVIELSKNNFLGEIAKGVTNPGASQTLNLSQNSFSRTIPESIGSMKSLESIDFSAN 148
             L  L V+ +S N F G I   ++N    Q+L+LSQN  S +IP  +G +  LE       
Sbjct:   578 LKELIVLNMSNNAFTGHIPPSLSNLSNLQSLDLSQNRLSGSIPPELGKLTFLE------- 630

Query:   149 HYLNLSNNNLTGEIPSGIQLQGFHQSRFAGSE-LCGAPF-PKC 189
              ++N S N L G IP   Q+Q  + S FA +  LCGAPF  KC
Sbjct:   631 -WMNFSYNRLEGPIPQATQIQSQNSSSFAENPGLCGAPFLNKC 672

GO:0005886 "plasma membrane" evidence=ISM

GO:0007165 "signal transduction" evidence=IC

TAIR|locus:2181042 AT5G01890 [Arabidopsis thaliana (taxid:3702)]

 Score = 198 (74.8 bits), Expect = 1.6e-14, P = 1.6e-14
 Identities = 57/181 (31%), Positives = 93/181 (51%)

Query:    10 HKFSRSFPTSTGALSSLESLHLHRNHLSGAIPLSLQNGTHFEVLDLRENAFIRDVPKWI- 68
             + F+ + P S G L  L+ L+L  N L+G +P +L N ++   +D+ +N+F  DV KW+ 
Sbjct:   295 NNFTGTVPFSLGNLEFLKDLNLSANMLAGELPQTLSNCSNLISIDVSKNSFTGDVLKWMF 354

Query:    69 ----KKSLLALFMMKGKAFEYSTN-----LNVLRVIELSKNNFLGEIAKGVTNPGASQTL 119
                 + S L+ F +  ++   +       L  LRV++LS N F GE+   +    +   L
Sbjct:   355 TGNSESSSLSRFSLHKRSGNDTIMPIVGFLQGLRVLDLSSNGFTGELPSNIWILTSLLQL 414

Query:   120 NLSQNSFSRTIPESIGSMKSLESIDFSANHYLNLSNNNLTGEIPSGIQLQGFH--QSRFA 177
             N+S NS   +IP  IG +K  E +D S+N    L N  L  EI   + L+  H  ++R +
Sbjct:   415 NMSTNSLFGSIPTGIGGLKVAEILDLSSN----LLNGTLPSEIGGAVSLKQLHLHRNRLS 470

Query:   178 G 178
             G
Sbjct:   471 G 471

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=ISS

GO:0005524 "ATP binding" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM;IDA

GO:0006468 "protein phosphorylation" evidence=IEA;ISS

GO:0007169 "transmembrane receptor protein tyrosine kinase signaling pathway" evidence=ISS

GO:0016301 "kinase activity" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0002237 "response to molecule of bacterial origin" evidence=RCA

GO:0007165 "signal transduction" evidence=RCA

GO:0010075 "regulation of meristem growth" evidence=RCA

GO:0010103 "stomatal complex morphogenesis" evidence=RCA

GO:0048443 "stamen development" evidence=RCA

TAIR|locus:2046357 RLP23 "receptor like protein 23" [Arabidopsis thaliana (taxid:3702)]

 Score = 164 (62.8 bits), Expect = 1.7e-14, Sum P(2) = 1.7e-14
 Identities = 42/109 (38%), Positives = 60/109 (55%)

Query:    78 MKGKAFEYSTNLNVLRVIELSKNNFLGEIAKGVTNPGASQTLNLSQNSFSRTIPESIGSM 137
             ++G+  E    L  L  + +S N F G I   + N    ++L++S+N  S TIP  +GS 
Sbjct:   712 LEGQIPESIGLLKALIAVNISNNAFTGHIPLSMANLENLESLDMSRNQLSGTIPNGLGS- 770

Query:   138 KSLESIDFSANHYLNLSNNNLTGEIPSGIQLQGFHQSRFAGSE-LCGAP 185
                  I F A  Y+N+S+N LTGEIP G Q+ G  +S F G+  LCG P
Sbjct:   771 -----ISFLA--YINVSHNQLTGEIPQGTQITGQSKSSFEGNAGLCGLP 812

GO:0005576 "extracellular region" evidence=ISM

GO:0006952 "defense response" evidence=ISS

GO:0016301 "kinase activity" evidence=ISS

GO:0007165 "signal transduction" evidence=IC

GO:0000165 "MAPK cascade" evidence=RCA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=RCA

GO:0006612 "protein targeting to membrane" evidence=RCA

GO:0009617 "response to bacterium" evidence=RCA

GO:0009627 "systemic acquired resistance" evidence=RCA

GO:0009862 "systemic acquired resistance, salicylic acid mediated signaling pathway" evidence=RCA

GO:0009867 "jasmonic acid mediated signaling pathway" evidence=RCA

GO:0010310 "regulation of hydrogen peroxide metabolic process" evidence=RCA

GO:0010363 "regulation of plant-type hypersensitive response" evidence=RCA

GO:0031348 "negative regulation of defense response" evidence=RCA

GO:0034976 "response to endoplasmic reticulum stress" evidence=RCA

GO:0035304 "regulation of protein dephosphorylation" evidence=RCA

TAIR|locus:2122239 AT4G36180 [Arabidopsis thaliana (taxid:3702)]

 Score = 195 (73.7 bits), Expect = 4.2e-14, P = 4.2e-14
 Identities = 56/164 (34%), Positives = 89/164 (54%)

Query:     9 QHKFSRSFPTSTGALSSLESLHLHRNHLSGAIPLSLQNGTHFEVLDLRENAFIRDVPKWI 68
             ++  + SFP    AL+SL  L L  N  SGA+P+S+ N ++   L+L  N F  ++P  +
Sbjct:   437 ENNLNGSFPVELMALTSLSELDLSGNRFSGAVPVSISNLSNLSFLNLSGNGFSGEIPASV 496

Query:    69 KK--SLLALFMMK-GKAFEYSTNLNVL---RVIELSKNNFLGEIAKGVTNPGASQTLNLS 122
                  L AL + K   + E    L+ L   +VI L  NNF G + +G ++  + + +NLS
Sbjct:   497 GNLFKLTALDLSKQNMSGEVPVELSGLPNVQVIALQGNNFSGVVPEGFSSLVSLRYVNLS 556

Query:   123 QNSFSRTIPESIGSMKSLESIDFSANHYLNLSNNNLTGEIPSGI 166
              NSFS  IP++ G ++ L S        L+LS+N+++G IP  I
Sbjct:   557 SNSFSGEIPQTFGFLRLLVS--------LSLSDNHISGSIPPEI 592

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA;ISS

GO:0005524 "ATP binding" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM;IDA

GO:0006468 "protein phosphorylation" evidence=IEA;ISS

GO:0007169 "transmembrane receptor protein tyrosine kinase signaling pathway" evidence=ISS

GO:0016301 "kinase activity" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0000226 "microtubule cytoskeleton organization" evidence=RCA

GO:0000911 "cytokinesis by cell plate formation" evidence=RCA

GO:0002237 "response to molecule of bacterial origin" evidence=RCA

GO:0006260 "DNA replication" evidence=RCA

GO:0006306 "DNA methylation" evidence=RCA

GO:0007165 "signal transduction" evidence=RCA

GO:0008283 "cell proliferation" evidence=RCA

GO:0009855 "determination of bilateral symmetry" evidence=RCA

GO:0010014 "meristem initiation" evidence=RCA

GO:0010073 "meristem maintenance" evidence=RCA

GO:0010075 "regulation of meristem growth" evidence=RCA

GO:0010103 "stomatal complex morphogenesis" evidence=RCA

GO:0030244 "cellulose biosynthetic process" evidence=RCA

GO:0048443 "stamen development" evidence=RCA

GO:0051567 "histone H3-K9 methylation" evidence=RCA

TAIR|locus:2156349 GSO2 "GASSHO 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 194 (73.4 bits), Expect = 6.1e-14, P = 6.1e-14
 Identities = 64/194 (32%), Positives = 93/194 (47%)

Query:     6 LKIQ-HKFSRSFPTSTGALSSLESLHLHRNHLSGAIPLSLQNGTHFEVLDLRENAFIRDV 64
             LK+  +KF  S PT   +L+++ +L L  N L+G+IP  + N      L+L EN     +
Sbjct:   677 LKLSSNKFVGSLPTEIFSLTNILTLFLDGNSLNGSIPQEIGNLQALNALNLEENQLSGPL 736

Query:    65 PKWIKKSLLALFMMK--GKAF--EYSTNLNVLR----VIELSKNNFLGEIAKGVTNPGAS 116
             P  I K L  LF ++    A   E    +  L+     ++LS NNF G I   ++     
Sbjct:   737 PSTIGK-LSKLFELRLSRNALTGEIPVEIGQLQDLQSALDLSYNNFTGRIPSTISTLPKL 795

Query:   117 QTLNLSQNSFSRTIPESIGSMKSLESIDFSANHYLNLSNNNLTGEIPSGIQLQGFHQSRF 176
             ++L+LS N     +P  IG MKSL         YLNLS NNL G++    Q   +    F
Sbjct:   796 ESLDLSHNQLVGEVPGQIGDMKSLG--------YLNLSYNNLEGKLKK--QFSRWQADAF 845

Query:   177 AGSE-LCGAPFPKC 189
              G+  LCG+P   C
Sbjct:   846 VGNAGLCGSPLSHC 859

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA;ISS

GO:0004713 "protein tyrosine kinase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA;ISS

GO:0006468 "protein phosphorylation" evidence=IEA;ISS

GO:0007169 "transmembrane receptor protein tyrosine kinase signaling pathway" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0009553 "embryo sac development" evidence=IMP

GO:0008544 "epidermis development" evidence=IGI

GO:0009790 "embryo development" evidence=IGI

TAIR|locus:2124296 AT4G34220 [Arabidopsis thaliana (taxid:3702)]

 Score = 191 (72.3 bits), Expect = 6.3e-14, P = 6.3e-14
 Identities = 56/178 (31%), Positives = 90/178 (50%)

Query:    12 FSRSFPTSTGALSSLESLHLHRNHLSGAIPLSLQNGTHFEVLDLRENAFIRDVPKWIK-- 69
             F+ S P S    + L+S+ L  N+LSG +P S+ + T+ ++L+L  NAF  ++P  I   
Sbjct:   115 FNGSLPDSVFNATELQSISLGSNNLSGDLPKSVNSVTNLQLLNLSANAFTGEIPLNISLL 174

Query:    70 KSLLALFMMKGK-AFEYSTNLNVLRVIELSKNNFLGEIAKGVTNPGASQTLNLSQNSFSR 128
             K+L  + + K   + +  +     ++++LS N   G + K +        LNLS N    
Sbjct:   175 KNLTVVSLSKNTFSGDIPSGFEAAQILDLSSNLLNGSLPKDLGGKSLHY-LNLSHNKV-- 231

Query:   129 TIPESIGSMKSLESIDFSANHYLNLSNNNLTGEIPSGIQLQGFHQSRFAGS-ELCGAP 185
                  +G +    +  F AN  ++LS NNLTG IPS + L       F+G+ ELCG P
Sbjct:   232 -----LGEISPNFAEKFPANATVDLSFNNLTGPIPSSLSLLNQKAESFSGNQELCGKP 284

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=ISS

GO:0004713 "protein tyrosine kinase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA;ISS

GO:0006468 "protein phosphorylation" evidence=IEA;ISS

GO:0007169 "transmembrane receptor protein tyrosine kinase signaling pathway" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

TAIR|locus:2120412 BAM3 "BARELY ANY MERISTEM 3" [Arabidopsis thaliana (taxid:3702)]

 Score = 192 (72.6 bits), Expect = 7.3e-14, P = 7.3e-14
 Identities = 65/197 (32%), Positives = 98/197 (49%)

Query:     6 LKIQHKF-SRSFP---TSTGALSSLESLHLHRNHLSGAIPLSLQNGTHFEVLDLRENAFI 61
             L++Q+ F +   P         SSL  ++L  N LSG IP S++N    ++L L  N   
Sbjct:   444 LELQNNFLTGEIPEEEAGNAQFSSLTQINLSNNRLSGPIPGSIRNLRSLQILLLGANRLS 503

Query:    62 RDVPKWIK--KSLLALFMMK----GKAF--EYSTNLNVLRVIELSKNNFLGEIAKGVTNP 113
               +P  I   KSLL + M +    GK F  E+   ++ L  ++LS N   G+I   ++  
Sbjct:   504 GQIPGEIGSLKSLLKIDMSRNNFSGK-FPPEFGDCMS-LTYLDLSHNQISGQIPVQISQI 561

Query:   114 GASQTLNLSQNSFSRTIPESIGSMKSLESIDFSANHYLNLSNNNLTGEIPSGIQLQGFHQ 173
                  LN+S NSF++++P  +G MKSL S DFS  H      NN +G +P+  Q   F+ 
Sbjct:   562 RILNYLNVSWNSFNQSLPNELGYMKSLTSADFS--H------NNFSGSVPTSGQFSYFNN 613

Query:   174 SRFAGSE-LCGAPFPKC 189
             + F G+  LCG     C
Sbjct:   614 TSFLGNPFLCGFSSNPC 630

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA;ISS

GO:0005524 "ATP binding" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0006468 "protein phosphorylation" evidence=IEA;ISS

GO:0007169 "transmembrane receptor protein tyrosine kinase signaling pathway" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0010075 "regulation of meristem growth" evidence=IGI;RCA

GO:0048437 "floral organ development" evidence=IGI

GO:0000271 "polysaccharide biosynthetic process" evidence=RCA

GO:0009825 "multidimensional cell growth" evidence=RCA

GO:0009855 "determination of bilateral symmetry" evidence=RCA

GO:0009932 "cell tip growth" evidence=RCA

GO:0010014 "meristem initiation" evidence=RCA

GO:0010073 "meristem maintenance" evidence=RCA

GO:0010817 "regulation of hormone levels" evidence=RCA

GO:0043481 "anthocyanin accumulation in tissues in response to UV light" evidence=RCA

GO:0048653 "anther development" evidence=RCA

GO:0048767 "root hair elongation" evidence=RCA

GO:0071555 "cell wall organization" evidence=RCA

TAIR|locus:2090754 RLP43 "receptor like protein 43" [Arabidopsis thaliana (taxid:3702)]

 Score = 190 (71.9 bits), Expect = 7.4e-14, P = 7.4e-14
 Identities = 58/166 (34%), Positives = 87/166 (52%)

Query:    10 HKFSRSFPTSTGALSSLESLHLHRNHLSGAIPLSLQNGTHFEVLDLRENAFIRDVPKWIK 69
             + F    P+S G LS+L SL+L +N+ SG IP  + N +    LDL  N F  ++P W+ 
Sbjct:   227 NNFLGQIPSSIGNLSNLTSLYLCKNNFSGQIPSFIGNLSQLTRLDLSSNNFFGEIPGWLW 286

Query:    70 KSLLALFMMKGKAFEYSTNLNVLR-------VIEL--SKNNFLGEIAKGVTNPGASQTLN 120
              +L  LF +      Y+T +   R       +  L  S NNF G+I   +    + +TL+
Sbjct:   287 -TLPNLFYVN---LSYNTFIGFQRPNKPEPSMGHLLGSNNNFTGKIPSFICELRSLETLD 342

Query:   121 LSQNSFSRTIPESIGSMKSLESIDFSANHYLNLSNNNLTGEIPSGI 166
             LS N+FS  IP  +G++KS      + +H LNL  NNL+G +P  I
Sbjct:   343 LSDNNFSGLIPRCMGNLKS------NLSH-LNLRQNNLSGGLPKHI 381

GO:0005886 "plasma membrane" evidence=ISM

GO:0016301 "kinase activity" evidence=ISS

GO:0007165 "signal transduction" evidence=IC

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: eugene3.00031679 hypothetical protein (1024 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	190
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	8e-16
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	4e-14
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	4e-14
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	2e-12
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	5e-12
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	1e-11
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	1e-10
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	4e-08
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	7e-05

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 74.5 bits (183), Expect = 8e-16
 Identities = 56/160 (35%), Positives = 80/160 (50%), Gaps = 14/160 (8%)

Query: 13  SRSFPTSTGALSSLESLHLHRNHLSGAIPLSLQNGTHFEVLDLRENAFIRDVPKWI--KK 70
           S   P   G L+SL  L L  N+L+G IP SL N  + + L L +N     +P  I   +
Sbjct: 225 SGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQ 284

Query: 71  SLLALFM----MKGKAFEYSTNLNVLRVIELSKNNFLGEIAKGVTNPGASQTLNLSQNSF 126
            L++L +    + G+  E    L  L ++ L  NNF G+I   +T+    Q L L  N F
Sbjct: 285 KLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKF 344

Query: 127 SRTIPESIGSMKSLESIDFSANHYLNLSNNNLTGEIPSGI 166
           S  IP+++G   +L  +D        LS NNLTGEIP G+
Sbjct: 345 SGEIPKNLGKHNNLTVLD--------LSTNNLTGEIPEGL 376

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 69.5 bits (170), Expect = 4e-14
 Identities = 59/180 (32%), Positives = 75/180 (41%), Gaps = 28/180 (15%)

Query: 12  FSRSFPTSTGALSSLESLHLHRNHLSGAIPLSLQNGTHFEVLDLRENAFIRDVP------ 65
            S   P   G+ SSL+ L L  N L G IP SL N T  E L L  N  +  +P      
Sbjct: 152 LSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQM 211

Query: 66  ---KWIKKSLLALFMMKGKAFEYSTNLNVLRVIELSKNNFLGEIAKGVTNPGASQTLNLS 122
              KWI    L    + G+       L  L  ++L  NN  G I   + N    Q L L 
Sbjct: 212 KSLKWI---YLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLY 268

Query: 123 QNSFSRTIPESIGSMKSLESIDFSAN----------------HYLNLSNNNLTGEIPSGI 166
           QN  S  IP SI S++ L S+D S N                  L+L +NN TG+IP  +
Sbjct: 269 QNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKIPVAL 328

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 69.5 bits (170), Expect = 4e-14
 Identities = 51/158 (32%), Positives = 74/158 (46%), Gaps = 34/158 (21%)

Query: 23  LSSLESLHLHRNHLSGAIPLSLQNGTHFEVLDLRENAFIRDVPKWIKKSLLALFMMKGKA 82
           L +LE LHL  N+ +G IP++L +    +VL L  N F  ++PK + K            
Sbjct: 307 LQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNLGKH----------- 355

Query: 83  FEYSTNLNVLRVIELSKNNFLGEIAKGVTNPGASQTLNLSQNSFSRTIPESIGSMKSLES 142
                  N L V++LS NN  GEI +G+ + G    L L  NS    IP+S+G+ +SL  
Sbjct: 356 -------NNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPKSLGACRSLRR 408

Query: 143 IDFSANH----------------YLNLSNNNLTGEIPS 164
           +    N                 +L++SNNNL G I S
Sbjct: 409 VRLQDNSFSGELPSEFTKLPLVYFLDISNNNLQGRINS 446

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 64.5 bits (157), Expect = 2e-12
 Identities = 61/211 (28%), Positives = 90/211 (42%), Gaps = 51/211 (24%)

Query: 4   QGLKIQHKFSRSF----PTSTGALSSLESLHLHRNHLSGAIPLSLQNGTHFEVLDLRENA 59
           Q L+I H FS +F    P +  +L  L+ L L  N  SG IP +L    +  VLDL  N 
Sbjct: 308 QNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNN 367

Query: 60  FIRDVPKWIKKS----LLALFM--MKGKAFEYSTNLNVLRVIELSKNNFLGEIAKGVT-- 111
              ++P+ +  S     L LF   ++G+  +       LR + L  N+F GE+    T  
Sbjct: 368 LTGEIPEGLCSSGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGELPSEFTKL 427

Query: 112 ----------------------NPGASQTLNLSQNSFSRTIPESIGSMKSLESIDFSANH 149
                                 +  + Q L+L++N F   +P+S GS K LE++D S N 
Sbjct: 428 PLVYFLDISNNNLQGRINSRKWDMPSLQMLSLARNKFFGGLPDSFGS-KRLENLDLSRNQ 486

Query: 150 Y----------------LNLSNNNLTGEIPS 164
           +                L LS N L+GEIP 
Sbjct: 487 FSGAVPRKLGSLSELMQLKLSENKLSGEIPD 517

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 63.3 bits (154), Expect = 5e-12
 Identities = 52/176 (29%), Positives = 82/176 (46%), Gaps = 28/176 (15%)

Query: 9   QHKFSRSFPTSTGALSSLESLHLHRNHLSGAIPLSLQNGTHFEVLDLRENAFIRDVPKWI 68
           ++KF    P S G+   LE+L L RN  SGA+P  L + +    L L EN    ++P   
Sbjct: 461 RNKFFGGLPDSFGS-KRLENLDLSRNQFSGAVPRKLGSLSELMQLKLSENKLSGEIPD-- 517

Query: 69  KKSLLALFMMKGKAFEYSTNLNVLRVIELSKNNFLGEIAKGVTNPGASQTLNLSQNSFSR 128
                          E S+   ++  ++LS N   G+I    +       L+LSQN  S 
Sbjct: 518 ---------------ELSSCKKLVS-LDLSHNQLSGQIPASFSEMPVLSQLDLSQNQLSG 561

Query: 129 TIPESIGSMKSLESIDFSANHYLNLSNNNLTGEIPSGIQLQGFHQSRFAGSE-LCG 183
            IP+++G+++SL  +        N+S+N+L G +PS       + S  AG+  LCG
Sbjct: 562 EIPKNLGNVESLVQV--------NISHNHLHGSLPSTGAFLAINASAVAGNIDLCG 609

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 62.6 bits (152), Expect = 1e-11
 Identities = 49/169 (28%), Positives = 77/169 (45%), Gaps = 32/169 (18%)

Query: 17  PTSTGALSSLESLHLHRNHLSGAIPLSLQNGTHFEVLDLRENAFIRDVPKWIKKSLLALF 76
               G++ +LE+L L  N LSG IP  + + +  +VLDL  N  +  +P  +        
Sbjct: 133 SIPRGSIPNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSL-------- 184

Query: 77  MMKGKAFEYSTNLNVLRVIELSKNNFLGEIAKGVTNPGASQTLNLSQNSFSRTIPESIGS 136
                     TNL  L  + L+ N  +G+I + +    + + + L  N+ S  IP  IG 
Sbjct: 185 ----------TNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGG 234

Query: 137 MKSLESIDFSANHYLNLSNNNLTGEIPSG------IQLQGFHQSRFAGS 179
           + SL       NH L+L  NNLTG IPS       +Q    +Q++ +G 
Sbjct: 235 LTSL-------NH-LDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGP 275

Length = 968

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 59.1 bits (143), Expect = 1e-10
 Identities = 36/102 (35%), Positives = 56/102 (54%), Gaps = 15/102 (14%)

Query: 89  LNVLRVIELSKNNFLGEIAKGVTNPGASQTLNLSQNSFSRTIPESIGSMKSLESIDFSAN 148
           L  L+ I LS N+  G I   + +  + + L+LS NSF+ +IPES+G + SL        
Sbjct: 441 LRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLR------- 493

Query: 149 HYLNLSNNNLTGEIPSGIQLQGFHQSRF-----AGSELCGAP 185
             LNL+ N+L+G +P+ +  +  H++ F     AG  LCG P
Sbjct: 494 -ILNLNGNSLSGRVPAALGGRLLHRASFNFTDNAG--LCGIP 532

Length = 623

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 51.8 bits (124), Expect = 4e-08
 Identities = 31/79 (39%), Positives = 41/79 (51%), Gaps = 7/79 (8%)

Query: 87  TNLNVLRVIELSKNNFLGEIAKGVTNPGASQTLNLSQNSFSRTIPESIGSMKSLESIDFS 146
            N + +  I+LS  N  G+I+  +      QT+NLS N  S  IP+ I +         S
Sbjct: 66  NNSSRVVSIDLSGKNISGKISSAIFRLPYIQTINLSNNQLSGPIPDDIFTTS-------S 118

Query: 147 ANHYLNLSNNNLTGEIPSG 165
           +  YLNLSNNN TG IP G
Sbjct: 119 SLRYLNLSNNNFTGSIPRG 137

Length = 968

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 42.1 bits (99), Expect = 7e-05
 Identities = 35/126 (27%), Positives = 53/126 (42%), Gaps = 30/126 (23%)

Query: 4   QGLKIQHKFSRSFPTSTGALSSLESLHLHRNHLSGAIPLSLQNGTHFEVLDLRENAFIRD 63
           QGL+         P     L  L+S++L  N + G IP SL + T  EVLDL  N+F   
Sbjct: 428 QGLRGF------IPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGS 481

Query: 64  VPKWIKKSLLALFMMKGKAFEYSTNLNVLRVIELSKNNFLGEIAKGVTNPGASQTLNLSQ 123
           +P+ + +                  L  LR++ L+ N+  G +      P A     L +
Sbjct: 482 IPESLGQ------------------LTSLRILNLNGNSLSGRV------PAALGGRLLHR 517

Query: 124 NSFSRT 129
            SF+ T
Sbjct: 518 ASFNFT 523

Length = 623

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	190
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	99.87
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	99.87
KOG4194	873	consensus Membrane glycoprotein LIG-1 [Signal tran	99.73
KOG4194	873	consensus Membrane glycoprotein LIG-1 [Signal tran	99.66
KOG0617	264	consensus Ras suppressor protein (contains leucine	99.65
KOG0444	1255	consensus Cytoskeletal regulator Flightless-I (con	99.65
KOG0472	565	consensus Leucine-rich repeat protein [Function un	99.64
KOG0444	1255	consensus Cytoskeletal regulator Flightless-I (con	99.63
KOG0617	264	consensus Ras suppressor protein (contains leucine	99.62
KOG0532	722	consensus Leucine-rich repeat (LRR) protein, conta	99.57
KOG0472	565	consensus Leucine-rich repeat protein [Function un	99.56
PLN03150	623	hypothetical protein; Provisional	99.49
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	99.49
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	99.49
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	99.47
PLN03210	1153	Resistant to P. syringae 6; Provisional	99.43
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	99.39
PLN03150	623	hypothetical protein; Provisional	99.39
KOG4237	498	consensus Extracellular matrix protein slit, conta	99.39
KOG0618	1081	consensus Serine/threonine phosphatase 2C containi	99.34
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	99.33
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	99.33
PLN03210	1153	Resistant to P. syringae 6; Provisional	99.3
KOG0618	1081	consensus Serine/threonine phosphatase 2C containi	99.24
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	99.22
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	99.21
KOG0532	722	consensus Leucine-rich repeat (LRR) protein, conta	99.14
KOG1259	490	consensus Nischarin, modulator of integrin alpha5	99.09
KOG4237	498	consensus Extracellular matrix protein slit, conta	99.08
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	99.03
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	99.0
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	98.96
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	98.87
KOG1259	490	consensus Nischarin, modulator of integrin alpha5	98.79
KOG3207	505	consensus Beta-tubulin folding cofactor E [Posttra	98.64
KOG0531	414	consensus Protein phosphatase 1, regulatory subuni	98.62
KOG1859	1096	consensus Leucine-rich repeat proteins [General fu	98.59
KOG3207	505	consensus Beta-tubulin folding cofactor E [Posttra	98.42
KOG4658	889	consensus Apoptotic ATPase [Signal transduction me	98.34
KOG1909	382	consensus Ran GTPase-activating protein [RNA proce	98.28
KOG4658	889	consensus Apoptotic ATPase [Signal transduction me	98.24
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	98.23
KOG1859	1096	consensus Leucine-rich repeat proteins [General fu	98.15
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	98.14
KOG1909	382	consensus Ran GTPase-activating protein [RNA proce	98.14
KOG0531	414	consensus Protein phosphatase 1, regulatory subuni	98.12
KOG1644	233	consensus U2-associated snRNP A' protein [RNA proc	98.12
COG5238	388	RNA1 Ran GTPase-activating protein (RanGAP) involv	98.09
KOG4579	177	consensus Leucine-rich repeat (LRR) protein associ	97.93
KOG4579	177	consensus Leucine-rich repeat (LRR) protein associ	97.9
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	97.86
PRK15386	426	type III secretion protein GogB; Provisional	97.63
KOG2120	419	consensus SCF ubiquitin ligase, Skp2 component [Po	97.61
PRK15386	426	type III secretion protein GogB; Provisional	97.47
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	97.29
KOG1644	233	consensus U2-associated snRNP A' protein [RNA proc	97.01
KOG2982	418	consensus Uncharacterized conserved protein [Funct	96.96
KOG2739	260	consensus Leucine-rich acidic nuclear protein [Cel	96.93
COG5238	388	RNA1 Ran GTPase-activating protein (RanGAP) involv	96.62
PF00560	22	LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le	96.41
KOG2120	419	consensus SCF ubiquitin ligase, Skp2 component [Po	96.33
PF00560	22	LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le	96.32
KOG2982	418	consensus Uncharacterized conserved protein [Funct	96.27
KOG2739	260	consensus Leucine-rich acidic nuclear protein [Cel	96.04
PF13306	129	LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_	95.63
PF13306	129	LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_	94.83
PF13504	17	LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OO	94.6
KOG2123	388	consensus Uncharacterized conserved protein [Funct	94.01
KOG2123	388	consensus Uncharacterized conserved protein [Funct	92.52
smart00369	26	LRR_TYP Leucine-rich repeats, typical (most popula	91.92
smart00370	26	LRR Leucine-rich repeats, outliers.	91.92
PF13516	24	LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RI	90.43
KOG0473	326	consensus Leucine-rich repeat protein [Function un	89.28
KOG0473	326	consensus Leucine-rich repeat protein [Function un	84.78
KOG3864	221	consensus Uncharacterized conserved protein [Funct	83.43
smart00364	26	LRR_BAC Leucine-rich repeats, bacterial type.	83.38
KOG4308	478	consensus LRR-containing protein [Function unknown	82.54
smart00368	28	LRR_RI Leucine rich repeat, ribonuclease inhibitor	81.63
KOG3864	221	consensus Uncharacterized conserved protein [Funct	81.08
smart00365	26	LRR_SD22 Leucine-rich repeat, SDS22-like subfamily	80.91
KOG1947	482	consensus Leucine rich repeat proteins, some prote	80.7

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=99.87  E-value=2.3e-22  Score=175.85  Aligned_cols=182  Identities=28%  Similarity=0.403  Sum_probs=132.1

Q ss_pred             CcceeccCCccccCCCcccCCCCCCcEEEcccCcccCcCCccccCCCCccEEeccCCcccCCCcHHHHHHHHHHH-----
Q 039561            2 LQQGLKIQHKFSRSFPTSTGALSSLESLHLHRNHLSGAIPLSLQNGTHFEVLDLRENAFIRDVPKWIKKSLLALF-----   76 (190)
Q Consensus         2 L~~L~l~~n~l~~~~p~~l~~l~~L~~l~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~~~~~l~-----   76 (190)
                      |++|++++|.+++.+|..+..++.|+++++++|.+++..|..+..+++|+.|++++|.+.+..|..+.  ...|.     
T Consensus       406 L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~~~~--~~~L~~L~ls  483 (968)
T PLN00113        406 LRRVRLQDNSFSGELPSEFTKLPLVYFLDISNNNLQGRINSRKWDMPSLQMLSLARNKFFGGLPDSFG--SKRLENLDLS  483 (968)
T ss_pred             CCEEECcCCEeeeECChhHhcCCCCCEEECcCCcccCccChhhccCCCCcEEECcCceeeeecCcccc--cccceEEECc
Confidence            44555555555555555555555555555555555555555455555666666666665555554331  22331     


Q ss_pred             --hhcCCcccccCCCCCCcEEEccCCeecccCCccCCCCCCCcEEEcccCcceeccCccccCCCCCCEEeCCCCc-----
Q 039561           77 --MMKGKAFEYSTNLNVLRVIELSKNNFLGEIAKGVTNPGASQTLNLSQNSFSRTIPESIGSMKSLESIDFSANH-----  149 (190)
Q Consensus        77 --~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~l~l~~N~-----  149 (190)
                        .+.+..|..+..++.|+.|++++|.+.+.+|..++.+++|+.|++++|.+++.+|..+..+++|+.|++++|+     
T Consensus       484 ~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~  563 (968)
T PLN00113        484 RNQFSGAVPRKLGSLSELMQLKLSENKLSGEIPDELSSCKKLVSLDLSHNQLSGQIPASFSEMPVLSQLDLSQNQLSGEI  563 (968)
T ss_pred             CCccCCccChhhhhhhccCEEECcCCcceeeCChHHcCccCCCEEECCCCcccccCChhHhCcccCCEEECCCCcccccC
Confidence              2234556667778889999999999988889888889999999999999998899999999999999999997     


Q ss_pred             -----------eEEeecccccccCCccccccccccccccCC-cccCCC
Q 039561          150 -----------YLNLSNNNLTGEIPSGIQLQGFHQSRFAGS-ELCGAP  185 (190)
Q Consensus       150 -----------~l~l~~N~l~g~~p~~~~~~~l~~~~~~~n-~l~~~~  185 (190)
                                 ++++++|++.|.+|+...+..+....+.+| .+|+.+
T Consensus       564 p~~l~~l~~L~~l~ls~N~l~~~~p~~~~~~~~~~~~~~~n~~lc~~~  611 (968)
T PLN00113        564 PKNLGNVESLVQVNISHNHLHGSLPSTGAFLAINASAVAGNIDLCGGD  611 (968)
T ss_pred             ChhHhcCcccCEEeccCCcceeeCCCcchhcccChhhhcCCccccCCc
Confidence                       789999999999998878888888889999 799754

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=99.87  E-value=3.5e-22  Score=174.70  Aligned_cols=147  Identities=33%  Similarity=0.393  Sum_probs=73.0

Q ss_pred             CcceeccCCccccCCCcccCCCCCCcEEEcccCcccCcCCccccCCCCccEEeccCCcccCCCcHHHHHHHHHHHhh---
Q 039561            2 LQQGLKIQHKFSRSFPTSTGALSSLESLHLHRNHLSGAIPLSLQNGTHFEVLDLRENAFIRDVPKWIKKSLLALFMM---   78 (190)
Q Consensus         2 L~~L~l~~n~l~~~~p~~l~~l~~L~~l~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~~~~~l~~~---   78 (190)
                      |++|++++|.+++.+|..++.+++|++|++++|.+.+.+|..+..+++|++|++++|.+.+..|..+.. +++|..+   
T Consensus       142 L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~-l~~L~~L~L~  220 (968)
T PLN00113        142 LETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQ-MKSLKWIYLG  220 (968)
T ss_pred             CCEEECcCCcccccCChHHhcCCCCCEEECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChHHcC-cCCccEEECc
Confidence            344455555554445555555555555555555555455555555555555555555555545544432 3333221   


Q ss_pred             ----cCCcccccCCCCCCcEEEccCCeecccCCccCCCCCCCcEEEcccCcceeccCccccCCCCCCEEeCCCCc
Q 039561           79 ----KGKAFEYSTNLNVLRVIELSKNNFLGEIAKGVTNPGASQTLNLSQNSFSRTIPESIGSMKSLESIDFSANH  149 (190)
Q Consensus        79 ----~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~l~l~~N~  149 (190)
                          .+..|..++.+++|++|++++|.+.+.+|..++.+++|+.|++++|.+++.+|..+..+++|+.|++++|.
T Consensus       221 ~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~  295 (968)
T PLN00113        221 YNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNS  295 (968)
T ss_pred             CCccCCcCChhHhcCCCCCEEECcCceeccccChhHhCCCCCCEEECcCCeeeccCchhHhhccCcCEEECcCCe
Confidence                22334444445555555555555554455555555555555555555554444444444555555554443

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]

Probab=99.73  E-value=1.2e-18  Score=139.36  Aligned_cols=101  Identities=23%  Similarity=0.281  Sum_probs=69.0

Q ss_pred             ccCCCCCCcEEEccCCeecccCCccCCCCCCCcEEEcccCcceeccCccccCCCCCCEEeCCCCc---------------
Q 039561           85 YSTNLNVLRVIELSKNNFLGEIAKGVTNPGASQTLNLSQNSFSRTIPESIGSMKSLESIDFSANH---------------  149 (190)
Q Consensus        85 ~~~~~~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~l~l~~N~---------------  149 (190)
                      .|..+..+++|+|..|++...--+|+-++++|+.|++++|.|....++.+..+++|+.|++++|+               
T Consensus       264 ~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI~rih~d~WsftqkL~~LdLs~N~i~~l~~~sf~~L~~L  343 (873)
T KOG4194|consen  264 AFYGLEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYNAIQRIHIDSWSFTQKLKELDLSSNRITRLDEGSFRVLSQL  343 (873)
T ss_pred             ceeeecccceeecccchhhhhhcccccccchhhhhccchhhhheeecchhhhcccceeEeccccccccCChhHHHHHHHh
Confidence            34445666666666666654445556666666666666666665566666666666666666665               


Q ss_pred             -------------------------eEEeecccccccCCccc----cccccccccccCCcccCCC
Q 039561          150 -------------------------YLNLSNNNLTGEIPSGI----QLQGFHQSRFAGSELCGAP  185 (190)
Q Consensus       150 -------------------------~l~l~~N~l~g~~p~~~----~~~~l~~~~~~~n~l~~~~  185 (190)
                                               .|||+.|.+++.|.+..    ++..|+.+.+.||++...|
T Consensus       344 e~LnLs~Nsi~~l~e~af~~lssL~~LdLr~N~ls~~IEDaa~~f~gl~~LrkL~l~gNqlk~I~  408 (873)
T KOG4194|consen  344 EELNLSHNSIDHLAEGAFVGLSSLHKLDLRSNELSWCIEDAAVAFNGLPSLRKLRLTGNQLKSIP  408 (873)
T ss_pred             hhhcccccchHHHHhhHHHHhhhhhhhcCcCCeEEEEEecchhhhccchhhhheeecCceeeecc
Confidence                                     68999999998887753    6788888888888777554

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]

Probab=99.66  E-value=1.7e-16  Score=127.20  Aligned_cols=145  Identities=23%  Similarity=0.190  Sum_probs=106.6

Q ss_pred             cceeccCCccccCCCcccCCCCCCcEEEcccCcccCcCCccccCCCCccEEeccCCcccCCCcHHHHHHHHHHHhh--cC
Q 039561            3 QQGLKIQHKFSRSFPTSTGALSSLESLHLHRNHLSGAIPLSLQNGTHFEVLDLRENAFIRDVPKWIKKSLLALFMM--KG   80 (190)
Q Consensus         3 ~~L~l~~n~l~~~~p~~l~~l~~L~~l~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~~~~~l~~~--~~   80 (190)
                      ++|++++|.+...-+..|.++++|+.+++.+|.++ .+|..-....+++.|++.+|.+...-.+.+.. ++.|..+  +-
T Consensus        81 ~~LdlsnNkl~~id~~~f~nl~nLq~v~l~~N~Lt-~IP~f~~~sghl~~L~L~~N~I~sv~se~L~~-l~alrslDLSr  158 (873)
T KOG4194|consen   81 QTLDLSNNKLSHIDFEFFYNLPNLQEVNLNKNELT-RIPRFGHESGHLEKLDLRHNLISSVTSEELSA-LPALRSLDLSR  158 (873)
T ss_pred             eeeeccccccccCcHHHHhcCCcceeeeeccchhh-hcccccccccceeEEeeeccccccccHHHHHh-Hhhhhhhhhhh
Confidence            45999999999877778899999999999999999 88976666677999999999987655555543 5555332  11


Q ss_pred             C----c-ccccCCCCCCcEEEccCCeecccCCccCCCCCCCcEEEcccCcceeccCccccCCCCCCEEeCCCCc
Q 039561           81 K----A-FEYSTNLNVLRVIELSKNNFLGEIAKGVTNPGASQTLNLSQNSFSRTIPESIGSMKSLESIDFSANH  149 (190)
Q Consensus        81 ~----~-~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~l~l~~N~  149 (190)
                      +    + -..+..-.++++|+|++|.|+....+.|..+..|.+|.|++|+++...+..|+.+++|+.|++..|+
T Consensus       159 N~is~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNrittLp~r~Fk~L~~L~~LdLnrN~  232 (873)
T KOG4194|consen  159 NLISEIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLSRNRITTLPQRSFKRLPKLESLDLNRNR  232 (873)
T ss_pred             chhhcccCCCCCCCCCceEEeeccccccccccccccccchheeeecccCcccccCHHHhhhcchhhhhhccccc
Confidence            1    1 1234444568888888888876666677777778888888888874444566667777777777776

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]

Probab=99.65  E-value=1.5e-18  Score=119.77  Aligned_cols=140  Identities=22%  Similarity=0.400  Sum_probs=95.6

Q ss_pred             cceeccCCccccCCCcccCCCCCCcEEEcccCcccCcCCccccCCCCccEEeccCCcccCCCcHHHHHHHHHHHhhcCCc
Q 039561            3 QQGLKIQHKFSRSFPTSTGALSSLESLHLHRNHLSGAIPLSLQNGTHFEVLDLRENAFIRDVPKWIKKSLLALFMMKGKA   82 (190)
Q Consensus         3 ~~L~l~~n~l~~~~p~~l~~l~~L~~l~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~~~~~l~~~~~~~   82 (190)
                      +.|-+++|.++. +|+.++.+.+|++|++.+|+++ ++|.+++.++.|+.|.++-|.+. ..|..+              
T Consensus        36 TrLtLSHNKl~~-vppnia~l~nlevln~~nnqie-~lp~~issl~klr~lnvgmnrl~-~lprgf--------------   98 (264)
T KOG0617|consen   36 TRLTLSHNKLTV-VPPNIAELKNLEVLNLSNNQIE-ELPTSISSLPKLRILNVGMNRLN-ILPRGF--------------   98 (264)
T ss_pred             hhhhcccCceee-cCCcHHHhhhhhhhhcccchhh-hcChhhhhchhhhheecchhhhh-cCcccc--------------
Confidence            445677777765 5667777777777777777777 67777777777777777777643 345444              


Q ss_pred             ccccCCCCCCcEEEccCCeec-ccCCccCCCCCCCcEEEcccCcceeccCccccCCCCCCEEeCCCCc------------
Q 039561           83 FEYSTNLNVLRVIELSKNNFL-GEIAKGVTNPGASQTLNLSQNSFSRTIPESIGSMKSLESIDFSANH------------  149 (190)
Q Consensus        83 ~~~~~~~~~L~~L~l~~n~l~-~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~l~l~~N~------------  149 (190)
                          +.++.|++|++.+|++. ..+|..|-.++.|+.|+++.|.+. .+|..++++++|+.|.+..|.            
T Consensus        99 ----gs~p~levldltynnl~e~~lpgnff~m~tlralyl~dndfe-~lp~dvg~lt~lqil~lrdndll~lpkeig~lt  173 (264)
T KOG0617|consen   99 ----GSFPALEVLDLTYNNLNENSLPGNFFYMTTLRALYLGDNDFE-ILPPDVGKLTNLQILSLRDNDLLSLPKEIGDLT  173 (264)
T ss_pred             ----CCCchhhhhhccccccccccCCcchhHHHHHHHHHhcCCCcc-cCChhhhhhcceeEEeeccCchhhCcHHHHHHH
Confidence                34777777777777765 346777777777777777777776 777777777777776655554            


Q ss_pred             ---eEEeecccccccCCcc
Q 039561          150 ---YLNLSNNNLTGEIPSG  165 (190)
Q Consensus       150 ---~l~l~~N~l~g~~p~~  165 (190)
                         ++.+.+|.++ .+|..
T Consensus       174 ~lrelhiqgnrl~-vlppe  191 (264)
T KOG0617|consen  174 RLRELHIQGNRLT-VLPPE  191 (264)
T ss_pred             HHHHHhcccceee-ecChh
Confidence               4556666666 44443

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]

Probab=99.65  E-value=2.6e-17  Score=133.12  Aligned_cols=182  Identities=24%  Similarity=0.374  Sum_probs=113.8

Q ss_pred             CcceeccCCccccC-CCcccCCCCCCcEEEcccCcccCcCCccccCCCCccEEeccCCcccCCCcHHHHHHHHHHHhhc-
Q 039561            2 LQQGLKIQHKFSRS-FPTSTGALSSLESLHLHRNHLSGAIPLSLQNGTHFEVLDLRENAFIRDVPKWIKKSLLALFMMK-   79 (190)
Q Consensus         2 L~~L~l~~n~l~~~-~p~~l~~l~~L~~l~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~~~~~l~~~~-   79 (190)
                      |+.+++..|++... +|+.+..+..|+.+++|.|+++ ++|..+-..+++-.|++++|++ ..+|..++.++.-|..+. 
T Consensus        80 LRsv~~R~N~LKnsGiP~diF~l~dLt~lDLShNqL~-EvP~~LE~AKn~iVLNLS~N~I-etIPn~lfinLtDLLfLDL  157 (1255)
T KOG0444|consen   80 LRSVIVRDNNLKNSGIPTDIFRLKDLTILDLSHNQLR-EVPTNLEYAKNSIVLNLSYNNI-ETIPNSLFINLTDLLFLDL  157 (1255)
T ss_pred             hHHHhhhccccccCCCCchhcccccceeeecchhhhh-hcchhhhhhcCcEEEEcccCcc-ccCCchHHHhhHhHhhhcc
Confidence            34445555554411 5555566666666666666665 5555555555555566666553 245544443344432221 


Q ss_pred             -C----Ccccc------------------------cCCCCCCcEEEccCCee-cccCCccCCCCCCCcEEEcccCcceec
Q 039561           80 -G----KAFEY------------------------STNLNVLRVIELSKNNF-LGEIAKGVTNPGASQTLNLSQNSFSRT  129 (190)
Q Consensus        80 -~----~~~~~------------------------~~~~~~L~~L~l~~n~l-~~~~p~~~~~l~~L~~L~l~~n~l~~~  129 (190)
                       .    ..|..                        +..+.+|++|.+++.+- ..-+|..+-.+.+|..+|++.|.+. .
T Consensus       158 S~NrLe~LPPQ~RRL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N~Lp-~  236 (1255)
T KOG0444|consen  158 SNNRLEMLPPQIRRLSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSENNLP-I  236 (1255)
T ss_pred             ccchhhhcCHHHHHHhhhhhhhcCCChhhHHHHhcCccchhhhhhhcccccchhhcCCCchhhhhhhhhccccccCCC-c
Confidence             1    11222                        22344455555554332 1246777777788888888888887 7


Q ss_pred             cCccccCCCCCCEEeCCCCc---------------eEEeecccccccCCccc-cccccccccccCC--cccCCCCC
Q 039561          130 IPESIGSMKSLESIDFSANH---------------YLNLSNNNLTGEIPSGI-QLQGFHQSRFAGS--ELCGAPFP  187 (190)
Q Consensus       130 ~p~~l~~l~~L~~l~l~~N~---------------~l~l~~N~l~g~~p~~~-~~~~l~~~~~~~n--~l~~~~~~  187 (190)
                      .|+.+-.+++|+.|+++.|+               .|++|.|+++ .+|+++ .+..++.+...+|  .+.|.|.|
T Consensus       237 vPecly~l~~LrrLNLS~N~iteL~~~~~~W~~lEtLNlSrNQLt-~LP~avcKL~kL~kLy~n~NkL~FeGiPSG  311 (1255)
T KOG0444|consen  237 VPECLYKLRNLRRLNLSGNKITELNMTEGEWENLETLNLSRNQLT-VLPDAVCKLTKLTKLYANNNKLTFEGIPSG  311 (1255)
T ss_pred             chHHHhhhhhhheeccCcCceeeeeccHHHHhhhhhhccccchhc-cchHHHhhhHHHHHHHhccCcccccCCccc
Confidence            88888888888888888887               6889999998 788887 6888888888888  55577754

>KOG0472 consensus Leucine-rich repeat protein [Function unknown]

Probab=99.64  E-value=2.6e-18  Score=132.05  Aligned_cols=175  Identities=21%  Similarity=0.321  Sum_probs=119.2

Q ss_pred             ceeccCCccccCCCcccCCCCCCcEEEcccCcccCcCCccccCCCCccEEeccCCcccCCCcHHHHHHHHHHHhh--c--
Q 039561            4 QGLKIQHKFSRSFPTSTGALSSLESLHLHRNHLSGAIPLSLQNGTHFEVLDLRENAFIRDVPKWIKKSLLALFMM--K--   79 (190)
Q Consensus         4 ~L~l~~n~l~~~~p~~l~~l~~L~~l~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~~~~~l~~~--~--   79 (190)
                      .++.+.|.++. +|+.+..+.+++.+++++|.+. .+|+.++.+..++.++..+|++. ..|+.+.. +.++..+  .  
T Consensus        95 ~l~vs~n~ls~-lp~~i~s~~~l~~l~~s~n~~~-el~~~i~~~~~l~dl~~~~N~i~-slp~~~~~-~~~l~~l~~~~n  170 (565)
T KOG0472|consen   95 SLNVSHNKLSE-LPEQIGSLISLVKLDCSSNELK-ELPDSIGRLLDLEDLDATNNQIS-SLPEDMVN-LSKLSKLDLEGN  170 (565)
T ss_pred             HhhcccchHhh-ccHHHhhhhhhhhhhcccccee-ecCchHHHHhhhhhhhccccccc-cCchHHHH-HHHHHHhhcccc
Confidence            44555555554 5666666666666666666666 66666666667777777777744 45555543 4444332  1  


Q ss_pred             --CCcccccCCCCCCcEEEccCCeecccCCccCCCCCCCcEEEcccCcceeccCccccCCCCCCEEeCCCCc--------
Q 039561           80 --GKAFEYSTNLNVLRVIELSKNNFLGEIAKGVTNPGASQTLNLSQNSFSRTIPESIGSMKSLESIDFSANH--------  149 (190)
Q Consensus        80 --~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~l~l~~N~--------  149 (190)
                        ...|+..-.|+.|++++...|-++ .+|+.++.+.+|..|++.+|++. ++| +|..+..|.++.++.|+        
T Consensus       171 ~l~~l~~~~i~m~~L~~ld~~~N~L~-tlP~~lg~l~~L~~LyL~~Nki~-~lP-ef~gcs~L~Elh~g~N~i~~lpae~  247 (565)
T KOG0472|consen  171 KLKALPENHIAMKRLKHLDCNSNLLE-TLPPELGGLESLELLYLRRNKIR-FLP-EFPGCSLLKELHVGENQIEMLPAEH  247 (565)
T ss_pred             chhhCCHHHHHHHHHHhcccchhhhh-cCChhhcchhhhHHHHhhhcccc-cCC-CCCccHHHHHHHhcccHHHhhHHHH
Confidence              122333334777888888777776 77777888888888888888887 667 67777777777777776        


Q ss_pred             --------eEEeecccccccCCccc-cccccccccccCCcccCCCC
Q 039561          150 --------YLNLSNNNLTGEIPSGI-QLQGFHQSRFAGSELCGAPF  186 (190)
Q Consensus       150 --------~l~l~~N~l~g~~p~~~-~~~~l~~~~~~~n~l~~~~~  186 (190)
                              .+|+.+|++. ++|+.+ -+++++++++++|.+++.|.
T Consensus       248 ~~~L~~l~vLDLRdNklk-e~Pde~clLrsL~rLDlSNN~is~Lp~  292 (565)
T KOG0472|consen  248 LKHLNSLLVLDLRDNKLK-EVPDEICLLRSLERLDLSNNDISSLPY  292 (565)
T ss_pred             hcccccceeeeccccccc-cCchHHHHhhhhhhhcccCCccccCCc
Confidence                    6888888887 778877 56678888888888887774

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]

Probab=99.63  E-value=2.7e-17  Score=133.08  Aligned_cols=160  Identities=24%  Similarity=0.374  Sum_probs=107.9

Q ss_pred             CcceeccCCccccCCCcccCCCCCCcEEEcccCccc-CcCCccccCCCCccEEeccCCcccCCCcHHHHHHHHHHHhhcC
Q 039561            2 LQQGLKIQHKFSRSFPTSTGALSSLESLHLHRNHLS-GAIPLSLQNGTHFEVLDLRENAFIRDVPKWIKKSLLALFMMKG   80 (190)
Q Consensus         2 L~~L~l~~n~l~~~~p~~l~~l~~L~~l~l~~n~~~-~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~~~~~l~~~~~   80 (190)
                      |+.|++++|++.. +-..++.++.|+.+.++.|++. ..+|..+..+..|..||+++|++ .++|..+-.          
T Consensus        57 LEHLs~~HN~L~~-vhGELs~Lp~LRsv~~R~N~LKnsGiP~diF~l~dLt~lDLShNqL-~EvP~~LE~----------  124 (1255)
T KOG0444|consen   57 LEHLSMAHNQLIS-VHGELSDLPRLRSVIVRDNNLKNSGIPTDIFRLKDLTILDLSHNQL-REVPTNLEY----------  124 (1255)
T ss_pred             hhhhhhhhhhhHh-hhhhhccchhhHHHhhhccccccCCCCchhcccccceeeecchhhh-hhcchhhhh----------
Confidence            5678888888876 4446788899999999999875 35787888999999999999995 478876654          


Q ss_pred             CcccccCCCCCCcEEEccCCeecccCCcc-CCCCCCCcEEEcccCcceeccCccccCCCCCCEEeCCCCc----------
Q 039561           81 KAFEYSTNLNVLRVIELSKNNFLGEIAKG-VTNPGASQTLNLSQNSFSRTIPESIGSMKSLESIDFSANH----------  149 (190)
Q Consensus        81 ~~~~~~~~~~~L~~L~l~~n~l~~~~p~~-~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~l~l~~N~----------  149 (190)
                              .+++.+|+|++|+|. .+|.. +-+++.|-.||+++|++. .+|+.+..+..|++|++++|.          
T Consensus       125 --------AKn~iVLNLS~N~Ie-tIPn~lfinLtDLLfLDLS~NrLe-~LPPQ~RRL~~LqtL~Ls~NPL~hfQLrQLP  194 (1255)
T KOG0444|consen  125 --------AKNSIVLNLSYNNIE-TIPNSLFINLTDLLFLDLSNNRLE-MLPPQIRRLSMLQTLKLSNNPLNHFQLRQLP  194 (1255)
T ss_pred             --------hcCcEEEEcccCccc-cCCchHHHhhHhHhhhccccchhh-hcCHHHHHHhhhhhhhcCCChhhHHHHhcCc
Confidence                    445555555555555 34432 234555555555555554 455555555555555555554          


Q ss_pred             -------------------------------eEEeecccccccCCccc-cccccccccccCCcccCC
Q 039561          150 -------------------------------YLNLSNNNLTGEIPSGI-QLQGFHQSRFAGSELCGA  184 (190)
Q Consensus       150 -------------------------------~l~l~~N~l~g~~p~~~-~~~~l~~~~~~~n~l~~~  184 (190)
                                                     .+|+|.|.+. .+|+++ .+.++..+++++|.++..
T Consensus       195 smtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N~Lp-~vPecly~l~~LrrLNLS~N~iteL  260 (1255)
T KOG0444|consen  195 SMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSENNLP-IVPECLYKLRNLRRLNLSGNKITEL  260 (1255)
T ss_pred             cchhhhhhhcccccchhhcCCCchhhhhhhhhccccccCCC-cchHHHhhhhhhheeccCcCceeee
Confidence                                           5777777776 667766 666777777777655543

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]

Probab=99.62  E-value=8.3e-18  Score=116.14  Aligned_cols=127  Identities=25%  Similarity=0.371  Sum_probs=95.3

Q ss_pred             CCcceeccCCccccCCCcccCCCCCCcEEEcccCcccCcCCccccCCCCccEEeccCCcccCC-CcHHHHHHHHHHHhhc
Q 039561            1 MLQQGLKIQHKFSRSFPTSTGALSSLESLHLHRNHLSGAIPLSLQNGTHFEVLDLRENAFIRD-VPKWIKKSLLALFMMK   79 (190)
Q Consensus         1 ~L~~L~l~~n~l~~~~p~~l~~l~~L~~l~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~-~p~~~~~~~~~l~~~~   79 (190)
                      .|++|++.+|++.. +|..++.+++|+.|++..|++. ..|..|+.++-|+.||+++|++... +|..++.         
T Consensus        57 nlevln~~nnqie~-lp~~issl~klr~lnvgmnrl~-~lprgfgs~p~levldltynnl~e~~lpgnff~---------  125 (264)
T KOG0617|consen   57 NLEVLNLSNNQIEE-LPTSISSLPKLRILNVGMNRLN-ILPRGFGSFPALEVLDLTYNNLNENSLPGNFFY---------  125 (264)
T ss_pred             hhhhhhcccchhhh-cChhhhhchhhhheecchhhhh-cCccccCCCchhhhhhccccccccccCCcchhH---------
Confidence            36889999999997 8999999999999999999998 8999999999999999999998753 5666664         


Q ss_pred             CCcccccCCCCCCcEEEccCCeecccCCccCCCCCCCcEEEcccCcceeccCccccCCCCCCEEeCCCCc
Q 039561           80 GKAFEYSTNLNVLRVIELSKNNFLGEIAKGVTNPGASQTLNLSQNSFSRTIPESIGSMKSLESIDFSANH  149 (190)
Q Consensus        80 ~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~l~l~~N~  149 (190)
                               +..|+.|+++.|-+. .+|+.++.+++|+.|.+..|.+- .+|..++.+..|++|.+++|+
T Consensus       126 ---------m~tlralyl~dndfe-~lp~dvg~lt~lqil~lrdndll-~lpkeig~lt~lrelhiqgnr  184 (264)
T KOG0617|consen  126 ---------MTTLRALYLGDNDFE-ILPPDVGKLTNLQILSLRDNDLL-SLPKEIGDLTRLRELHIQGNR  184 (264)
T ss_pred             ---------HHHHHHHHhcCCCcc-cCChhhhhhcceeEEeeccCchh-hCcHHHHHHHHHHHHhcccce
Confidence                     444555556666555 55555666666666666666555 556666666666666666665

>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]

Probab=99.57  E-value=2.4e-17  Score=131.44  Aligned_cols=159  Identities=25%  Similarity=0.430  Sum_probs=116.6

Q ss_pred             eccCCccccCCCcccCCCCCCcEEEcccCcccCcCCccccCCCCccEEeccCCcccCCCcHHHHHHHHHHHhhcCCcccc
Q 039561            6 LKIQHKFSRSFPTSTGALSSLESLHLHRNHLSGAIPLSLQNGTHFEVLDLRENAFIRDVPKWIKKSLLALFMMKGKAFEY   85 (190)
Q Consensus         6 ~l~~n~l~~~~p~~l~~l~~L~~l~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~~~~~l~~~~~~~~~~   85 (190)
                      +++.|++.. +|..+..+..|..+.+..|.+. .+|..+..+..|.++|++.|+++ ..|..++.               
T Consensus        81 DlsrNR~~e-lp~~~~~f~~Le~liLy~n~~r-~ip~~i~~L~~lt~l~ls~NqlS-~lp~~lC~---------------  142 (722)
T KOG0532|consen   81 DLSRNRFSE-LPEEACAFVSLESLILYHNCIR-TIPEAICNLEALTFLDLSSNQLS-HLPDGLCD---------------  142 (722)
T ss_pred             hcccccccc-CchHHHHHHHHHHHHHHhccce-ecchhhhhhhHHHHhhhccchhh-cCChhhhc---------------
Confidence            344444443 4444444444444444444444 44444444555555555555532 34444443               


Q ss_pred             cCCCCCCcEEEccCCeecccCCccCCCCCCCcEEEcccCcceeccCccccCCCCCCEEeCCCCc--------------eE
Q 039561           86 STNLNVLRVIELSKNNFLGEIAKGVTNPGASQTLNLSQNSFSRTIPESIGSMKSLESIDFSANH--------------YL  151 (190)
Q Consensus        86 ~~~~~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~l~l~~N~--------------~l  151 (190)
                         ++ |++|.+++|++. .+|+.++.+..|.+||.+.|.+. .+|..++.+.+|+.+.+..|+              .|
T Consensus       143 ---lp-Lkvli~sNNkl~-~lp~~ig~~~tl~~ld~s~nei~-slpsql~~l~slr~l~vrRn~l~~lp~El~~LpLi~l  216 (722)
T KOG0532|consen  143 ---LP-LKVLIVSNNKLT-SLPEEIGLLPTLAHLDVSKNEIQ-SLPSQLGYLTSLRDLNVRRNHLEDLPEELCSLPLIRL  216 (722)
T ss_pred             ---Cc-ceeEEEecCccc-cCCcccccchhHHHhhhhhhhhh-hchHHhhhHHHHHHHHHhhhhhhhCCHHHhCCceeee
Confidence               66 889999999987 88998998899999999999998 889999999999999999998              79


Q ss_pred             EeecccccccCCccc-cccccccccccCCcccCCCCCCC
Q 039561          152 NLSNNNLTGEIPSGI-QLQGFHQSRFAGSELCGAPFPKC  189 (190)
Q Consensus       152 ~l~~N~l~g~~p~~~-~~~~l~~~~~~~n~l~~~~~~~c  189 (190)
                      |+|+|+++ .+|.++ .++.|.++-+.+|.|...|++.|
T Consensus       217 DfScNkis-~iPv~fr~m~~Lq~l~LenNPLqSPPAqIC  254 (722)
T KOG0532|consen  217 DFSCNKIS-YLPVDFRKMRHLQVLQLENNPLQSPPAQIC  254 (722)
T ss_pred             ecccCcee-ecchhhhhhhhheeeeeccCCCCCChHHHH
Confidence            99999999 899999 89999999999999999987655

>KOG0472 consensus Leucine-rich repeat protein [Function unknown]

Probab=99.56  E-value=6.8e-17  Score=124.39  Aligned_cols=172  Identities=22%  Similarity=0.286  Sum_probs=144.3

Q ss_pred             CcceeccCCccccCCCcccCCCCCCcEEEcccCcccCcCCccccCCCCccEEeccCCcccCCCcHHHHHHHHHHHhh---
Q 039561            2 LQQGLKIQHKFSRSFPTSTGALSSLESLHLHRNHLSGAIPLSLQNGTHFEVLDLRENAFIRDVPKWIKKSLLALFMM---   78 (190)
Q Consensus         2 L~~L~l~~n~l~~~~p~~l~~l~~L~~l~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~~~~~l~~~---   78 (190)
                      |+.++.++|.+.. +|+.++.+..+..++..+|+++ ..|..+..+.++..+++.+|.+. ..|+.... |++|..+   
T Consensus       116 l~~l~~s~n~~~e-l~~~i~~~~~l~dl~~~~N~i~-slp~~~~~~~~l~~l~~~~n~l~-~l~~~~i~-m~~L~~ld~~  191 (565)
T KOG0472|consen  116 LVKLDCSSNELKE-LPDSIGRLLDLEDLDATNNQIS-SLPEDMVNLSKLSKLDLEGNKLK-ALPENHIA-MKRLKHLDCN  191 (565)
T ss_pred             hhhhhccccceee-cCchHHHHhhhhhhhccccccc-cCchHHHHHHHHHHhhccccchh-hCCHHHHH-HHHHHhcccc
Confidence            5678899999987 7888999999999999999999 78888888899999999999965 45555544 8888555   


Q ss_pred             ---cCCcccccCCCCCCcEEEccCCeecccCCccCCCCCCCcEEEcccCcceeccCcccc-CCCCCCEEeCCCCc-----
Q 039561           79 ---KGKAFEYSTNLNVLRVIELSKNNFLGEIAKGVTNPGASQTLNLSQNSFSRTIPESIG-SMKSLESIDFSANH-----  149 (190)
Q Consensus        79 ---~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~l~-~l~~L~~l~l~~N~-----  149 (190)
                         -+.+|+.++.+.+|..|++..|++. .+| .|+++..|..++++.|.|. .+|.+.. ++.++..+|+..|+     
T Consensus       192 ~N~L~tlP~~lg~l~~L~~LyL~~Nki~-~lP-ef~gcs~L~Elh~g~N~i~-~lpae~~~~L~~l~vLDLRdNklke~P  268 (565)
T KOG0472|consen  192 SNLLETLPPELGGLESLELLYLRRNKIR-FLP-EFPGCSLLKELHVGENQIE-MLPAEHLKHLNSLLVLDLRDNKLKEVP  268 (565)
T ss_pred             hhhhhcCChhhcchhhhHHHHhhhcccc-cCC-CCCccHHHHHHHhcccHHH-hhHHHHhcccccceeeeccccccccCc
Confidence               3567889999999999999999997 777 6899999999999999997 7787654 88899999999998     


Q ss_pred             ----------eEEeecccccccCCccccccccccccccCCcc
Q 039561          150 ----------YLNLSNNNLTGEIPSGIQLQGFHQSRFAGSEL  181 (190)
Q Consensus       150 ----------~l~l~~N~l~g~~p~~~~~~~l~~~~~~~n~l  181 (190)
                                ++|+|+|.++ ..|.+.+--+++.+.+.||.+
T Consensus       269 de~clLrsL~rLDlSNN~is-~Lp~sLgnlhL~~L~leGNPl  309 (565)
T KOG0472|consen  269 DEICLLRSLERLDLSNNDIS-SLPYSLGNLHLKFLALEGNPL  309 (565)
T ss_pred             hHHHHhhhhhhhcccCCccc-cCCcccccceeeehhhcCCch
Confidence                      8999999999 677777433899998888854

>PLN03150 hypothetical protein; Provisional

Probab=99.49  E-value=6.1e-14  Score=117.51  Aligned_cols=114  Identities=35%  Similarity=0.554  Sum_probs=99.9

Q ss_pred             ccEEeccCCcccCCCcHHHHHHHHHHHhhcCCcccccCCCCCCcEEEccCCeecccCCccCCCCCCCcEEEcccCcceec
Q 039561           50 FEVLDLRENAFIRDVPKWIKKSLLALFMMKGKAFEYSTNLNVLRVIELSKNNFLGEIAKGVTNPGASQTLNLSQNSFSRT  129 (190)
Q Consensus        50 L~~L~l~~n~~~~~~p~~~~~~~~~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~  129 (190)
                      ++.|++++|.+.+.+|..+..                  +++|+.|+|++|.+.|.+|..++.++.|+.|++++|.++|.
T Consensus       420 v~~L~L~~n~L~g~ip~~i~~------------------L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~  481 (623)
T PLN03150        420 IDGLGLDNQGLRGFIPNDISK------------------LRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGS  481 (623)
T ss_pred             EEEEECCCCCccccCCHHHhC------------------CCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCC
Confidence            678899999988888887766                  99999999999999999999999999999999999999999


Q ss_pred             cCccccCCCCCCEEeCCCCceEEeecccccccCCcccc--ccccccccccCC-cccCCCC-CCC
Q 039561          130 IPESIGSMKSLESIDFSANHYLNLSNNNLTGEIPSGIQ--LQGFHQSRFAGS-ELCGAPF-PKC  189 (190)
Q Consensus       130 ~p~~l~~l~~L~~l~l~~N~~l~l~~N~l~g~~p~~~~--~~~l~~~~~~~n-~l~~~~~-~~c  189 (190)
                      +|+.++.+++|+.        |++++|.++|.+|+.+.  ..++..+.+.+| .+|+.|. ..|
T Consensus       482 iP~~l~~L~~L~~--------L~Ls~N~l~g~iP~~l~~~~~~~~~l~~~~N~~lc~~p~l~~C  537 (623)
T PLN03150        482 IPESLGQLTSLRI--------LNLNGNSLSGRVPAALGGRLLHRASFNFTDNAGLCGIPGLRAC  537 (623)
T ss_pred             CchHHhcCCCCCE--------EECcCCcccccCChHHhhccccCceEEecCCccccCCCCCCCC
Confidence            9999999999995        55888999999999873  345667889999 8999874 466

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=99.49  E-value=1.3e-13  Score=116.55  Aligned_cols=128  Identities=20%  Similarity=0.326  Sum_probs=72.5

Q ss_pred             CCccEEeccCCcccCCCcHHHHHHHHHHHhhcCCcccccCCC-CCCcEEEccCCeecccCCccCCC--------------
Q 039561           48 THFEVLDLRENAFIRDVPKWIKKSLLALFMMKGKAFEYSTNL-NVLRVIELSKNNFLGEIAKGVTN--------------  112 (190)
Q Consensus        48 ~~L~~L~l~~n~~~~~~p~~~~~~~~~l~~~~~~~~~~~~~~-~~L~~L~l~~n~l~~~~p~~~~~--------------  112 (190)
                      ++|+.|++++|.+.+ +|..+. .+..|.... +....+..+ ..|+.|++++|++. .+|.....              
T Consensus       302 ~~L~~LdLS~N~L~~-Lp~lp~-~L~~L~Ls~-N~L~~LP~lp~~Lq~LdLS~N~Ls-~LP~lp~~L~~L~Ls~N~L~~L  377 (788)
T PRK15387        302 PGLQELSVSDNQLAS-LPALPS-ELCKLWAYN-NQLTSLPTLPSGLQELSVSDNQLA-SLPTLPSELYKLWAYNNRLTSL  377 (788)
T ss_pred             cccceeECCCCcccc-CCCCcc-ccccccccc-CccccccccccccceEecCCCccC-CCCCCCcccceehhhccccccC
Confidence            456777777776553 333211 122221111 111112122 35777888877776 34432211              


Q ss_pred             ---CCCCcEEEcccCcceeccCccccCCCCCCEEeCCCCc------------eEEeecccccccCCccc-cccccccccc
Q 039561          113 ---PGASQTLNLSQNSFSRTIPESIGSMKSLESIDFSANH------------YLNLSNNNLTGEIPSGI-QLQGFHQSRF  176 (190)
Q Consensus       113 ---l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~l~l~~N~------------~l~l~~N~l~g~~p~~~-~~~~l~~~~~  176 (190)
                         ...|+.|++++|.++ .+|..   .++|+.|++++|.            +|++++|+|+ .+|..+ .+..+..+++
T Consensus       378 P~l~~~L~~LdLs~N~Lt-~LP~l---~s~L~~LdLS~N~LssIP~l~~~L~~L~Ls~NqLt-~LP~sl~~L~~L~~LdL  452 (788)
T PRK15387        378 PALPSGLKELIVSGNRLT-SLPVL---PSELKELMVSGNRLTSLPMLPSGLLSLSVYRNQLT-RLPESLIHLSSETTVNL  452 (788)
T ss_pred             cccccccceEEecCCccc-CCCCc---ccCCCEEEccCCcCCCCCcchhhhhhhhhccCccc-ccChHHhhccCCCeEEC
Confidence               124566666666665 34432   2456777777776            5777888887 778776 6788888888


Q ss_pred             cCCcccCC
Q 039561          177 AGSELCGA  184 (190)
Q Consensus       177 ~~n~l~~~  184 (190)
                      ++|.+++.
T Consensus       453 s~N~Ls~~  460 (788)
T PRK15387        453 EGNPLSER  460 (788)
T ss_pred             CCCCCCch
Confidence            88877754

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=99.49  E-value=1.1e-13  Score=117.14  Aligned_cols=166  Identities=19%  Similarity=0.340  Sum_probs=76.3

Q ss_pred             cceeccCCccccCCCcccCCCCCCcEEEcccCcccCcCCccccCCCCccEEeccCCcccCCCcHHHHHHHHHHHhhcC--
Q 039561            3 QQGLKIQHKFSRSFPTSTGALSSLESLHLHRNHLSGAIPLSLQNGTHFEVLDLRENAFIRDVPKWIKKSLLALFMMKG--   80 (190)
Q Consensus         3 ~~L~l~~n~l~~~~p~~l~~l~~L~~l~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~~~~~l~~~~~--   80 (190)
                      +.|++++|+++. +|..+.  ++|++|++++|.++ .+|..+.  ..|+.|++++|.+. .+|..+...++.|..-..  
T Consensus       202 ~~L~Ls~N~Lts-LP~~l~--~nL~~L~Ls~N~Lt-sLP~~l~--~~L~~L~Ls~N~L~-~LP~~l~s~L~~L~Ls~N~L  274 (754)
T PRK15370        202 TTLILDNNELKS-LPENLQ--GNIKTLYANSNQLT-SIPATLP--DTIQEMELSINRIT-ELPERLPSALQSLDLFHNKI  274 (754)
T ss_pred             cEEEecCCCCCc-CChhhc--cCCCEEECCCCccc-cCChhhh--ccccEEECcCCccC-cCChhHhCCCCEEECcCCcc
Confidence            445555555553 343332  34555555555555 3443332  24555555555543 344433211111100000  


Q ss_pred             -CcccccCCCCCCcEEEccCCeecccCCccCCCCCCCcEEEcccCcceeccCccccCCCCCCEEeCCCCc----------
Q 039561           81 -KAFEYSTNLNVLRVIELSKNNFLGEIAKGVTNPGASQTLNLSQNSFSRTIPESIGSMKSLESIDFSANH----------  149 (190)
Q Consensus        81 -~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~l~l~~N~----------  149 (190)
                       .+|..+.  ++|+.|++++|++. .+|..+.  ..|+.|++++|.++ .+|..+  .++|+.|++++|.          
T Consensus       275 ~~LP~~l~--~sL~~L~Ls~N~Lt-~LP~~lp--~sL~~L~Ls~N~Lt-~LP~~l--~~sL~~L~Ls~N~Lt~LP~~l~~  346 (754)
T PRK15370        275 SCLPENLP--EELRYLSVYDNSIR-TLPAHLP--SGITHLNVQSNSLT-ALPETL--PPGLKTLEAGENALTSLPASLPP  346 (754)
T ss_pred             CccccccC--CCCcEEECCCCccc-cCcccch--hhHHHHHhcCCccc-cCCccc--cccceeccccCCccccCChhhcC
Confidence             0111111  23444444444443 2332221  23444444444444 233222  2456666666664          


Q ss_pred             ---eEEeecccccccCCccccccccccccccCCcccCCC
Q 039561          150 ---YLNLSNNNLTGEIPSGIQLQGFHQSRFAGSELCGAP  185 (190)
Q Consensus       150 ---~l~l~~N~l~g~~p~~~~~~~l~~~~~~~n~l~~~~  185 (190)
                         .|++++|+|+ .+|..+ ...++.+++++|.+...|
T Consensus       347 sL~~L~Ls~N~L~-~LP~~l-p~~L~~LdLs~N~Lt~LP  383 (754)
T PRK15370        347 ELQVLDVSKNQIT-VLPETL-PPTITTLDVSRNALTNLP  383 (754)
T ss_pred             cccEEECCCCCCC-cCChhh-cCCcCEEECCCCcCCCCC
Confidence               6777777776 566554 356777778887776665

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=99.47  E-value=1.2e-13  Score=117.06  Aligned_cols=167  Identities=18%  Similarity=0.329  Sum_probs=116.3

Q ss_pred             CcceeccCCccccCCCcccCCCCCCcEEEcccCcccCcCCccccCCCCccEEeccCCcccCCCcHHHHHHHHHHHhhcCC
Q 039561            2 LQQGLKIQHKFSRSFPTSTGALSSLESLHLHRNHLSGAIPLSLQNGTHFEVLDLRENAFIRDVPKWIKKSLLALFMMKGK   81 (190)
Q Consensus         2 L~~L~l~~n~l~~~~p~~l~~l~~L~~l~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~~~~~l~~~~~~   81 (190)
                      |++|++++|.++. +|..+.  .+|+.|++++|.++ .+|..+.  ..|+.|++++|.+. .+|..+..+++.|..-...
T Consensus       222 L~~L~Ls~N~Lts-LP~~l~--~~L~~L~Ls~N~L~-~LP~~l~--s~L~~L~Ls~N~L~-~LP~~l~~sL~~L~Ls~N~  294 (754)
T PRK15370        222 IKTLYANSNQLTS-IPATLP--DTIQEMELSINRIT-ELPERLP--SALQSLDLFHNKIS-CLPENLPEELRYLSVYDNS  294 (754)
T ss_pred             CCEEECCCCcccc-CChhhh--ccccEEECcCCccC-cCChhHh--CCCCEEECcCCccC-ccccccCCCCcEEECCCCc
Confidence            6778888888875 665443  36777777777777 5665543  46777777777755 3555443223322111111


Q ss_pred             ---cccccCCCCCCcEEEccCCeecccCCccCCCCCCCcEEEcccCcceeccCccccCCCCCCEEeCCCCc---------
Q 039561           82 ---AFEYSTNLNVLRVIELSKNNFLGEIAKGVTNPGASQTLNLSQNSFSRTIPESIGSMKSLESIDFSANH---------  149 (190)
Q Consensus        82 ---~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~l~l~~N~---------  149 (190)
                         +|..+  .+.|+.|++++|.+. .+|..+.  ++|+.|++++|.++ .+|..+.  ++|+.|++++|+         
T Consensus       295 Lt~LP~~l--p~sL~~L~Ls~N~Lt-~LP~~l~--~sL~~L~Ls~N~Lt-~LP~~l~--~sL~~L~Ls~N~L~~LP~~lp  366 (754)
T PRK15370        295 IRTLPAHL--PSGITHLNVQSNSLT-ALPETLP--PGLKTLEAGENALT-SLPASLP--PELQVLDVSKNQITVLPETLP  366 (754)
T ss_pred             cccCcccc--hhhHHHHHhcCCccc-cCCcccc--ccceeccccCCccc-cCChhhc--CcccEEECCCCCCCcCChhhc
Confidence               12111  236888999999998 5676443  68999999999998 5776553  689999999997         


Q ss_pred             ----eEEeecccccccCCccccccccccccccCCcccCCC
Q 039561          150 ----YLNLSNNNLTGEIPSGIQLQGFHQSRFAGSELCGAP  185 (190)
Q Consensus       150 ----~l~l~~N~l~g~~p~~~~~~~l~~~~~~~n~l~~~~  185 (190)
                          +|++++|.|+ .+|..+. ..++.+.+.+|.+...|
T Consensus       367 ~~L~~LdLs~N~Lt-~LP~~l~-~sL~~LdLs~N~L~~LP  404 (754)
T PRK15370        367 PTITTLDVSRNALT-NLPENLP-AALQIMQASRNNLVRLP  404 (754)
T ss_pred             CCcCEEECCCCcCC-CCCHhHH-HHHHHHhhccCCcccCc
Confidence                7999999999 7887652 46888999999888776

>PLN03210 Resistant to P

Probab=99.43  E-value=6.6e-13  Score=118.24  Aligned_cols=95  Identities=26%  Similarity=0.326  Sum_probs=77.0

Q ss_pred             CCCcEEEccCCeecccCCccCCCCCCCcEEEcccCcceeccCccccCCCCCCEEeCCCCc-------------eEEeecc
Q 039561           90 NVLRVIELSKNNFLGEIAKGVTNPGASQTLNLSQNSFSRTIPESIGSMKSLESIDFSANH-------------YLNLSNN  156 (190)
Q Consensus        90 ~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~l~l~~N~-------------~l~l~~N  156 (190)
                      ++|+.|++++|...+.+|..++.+++|+.|++++|...+.+|..+ .+++|+.|++++|.             +|++++|
T Consensus       778 ~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~-~L~sL~~L~Ls~c~~L~~~p~~~~nL~~L~Ls~n  856 (1153)
T PLN03210        778 PSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTGI-NLESLESLDLSGCSRLRTFPDISTNISDLNLSRT  856 (1153)
T ss_pred             ccchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCCCC-CccccCEEECCCCCccccccccccccCEeECCCC
Confidence            567888888887666788889999999999999875444777766 67889999999874             7899999


Q ss_pred             cccccCCccc-cccccccccccCC-cccCCCC
Q 039561          157 NLTGEIPSGI-QLQGFHQSRFAGS-ELCGAPF  186 (190)
Q Consensus       157 ~l~g~~p~~~-~~~~l~~~~~~~n-~l~~~~~  186 (190)
                      .+. .+|..+ .+.+++.+.+.++ .+...|.
T Consensus       857 ~i~-~iP~si~~l~~L~~L~L~~C~~L~~l~~  887 (1153)
T PLN03210        857 GIE-EVPWWIEKFSNLSFLDMNGCNNLQRVSL  887 (1153)
T ss_pred             CCc-cChHHHhcCCCCCEEECCCCCCcCccCc
Confidence            998 788877 7888999998886 7776654

syringae 6; Provisional

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=99.39  E-value=7.6e-14  Score=107.97  Aligned_cols=61  Identities=25%  Similarity=0.440  Sum_probs=28.0

Q ss_pred             CCCCcEEEccCCeeccc----CCccCCCCCCCcEEEcccCcceec----cCccccCCCCCCEEeCCCCc
Q 039561           89 LNVLRVIELSKNNFLGE----IAKGVTNPGASQTLNLSQNSFSRT----IPESIGSMKSLESIDFSANH  149 (190)
Q Consensus        89 ~~~L~~L~l~~n~l~~~----~p~~~~~l~~L~~L~l~~n~l~~~----~p~~l~~l~~L~~l~l~~N~  149 (190)
                      ++.++.|++++|.+.+.    ++..+...+.|+.|++++|.+++.    +...+..+++|+.|++++|.
T Consensus       164 ~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~  232 (319)
T cd00116         164 NRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNN  232 (319)
T ss_pred             CCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCc
Confidence            44555555555555421    122233334555555555555422    12233444555555555543

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>PLN03150 hypothetical protein; Provisional

Probab=99.39  E-value=8.9e-13  Score=110.56  Aligned_cols=107  Identities=27%  Similarity=0.461  Sum_probs=89.2

Q ss_pred             CCcEEEcccCcccCcCCccccCCCCccEEeccCCcccCCCcHHHHHHHHHHHhhcCCcccccCCCCCCcEEEccCCeecc
Q 039561           25 SLESLHLHRNHLSGAIPLSLQNGTHFEVLDLRENAFIRDVPKWIKKSLLALFMMKGKAFEYSTNLNVLRVIELSKNNFLG  104 (190)
Q Consensus        25 ~L~~l~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~~~~~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~  104 (190)
                      .++.|++++|.+++.+|..+..+++|+.|++++|.+.+.+|..+..                  ++.|+.|++++|++++
T Consensus       419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~------------------l~~L~~LdLs~N~lsg  480 (623)
T PLN03150        419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGS------------------ITSLEVLDLSYNSFNG  480 (623)
T ss_pred             EEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhC------------------CCCCCEEECCCCCCCC
Confidence            3778899999999889988889999999999999988888887766                  8899999999999998


Q ss_pred             cCCccCCCCCCCcEEEcccCcceeccCccccCC-CCCCEEeCCCCc
Q 039561          105 EIAKGVTNPGASQTLNLSQNSFSRTIPESIGSM-KSLESIDFSANH  149 (190)
Q Consensus       105 ~~p~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l-~~L~~l~l~~N~  149 (190)
                      .+|+.++.+++|+.|++++|.++|.+|..++.. .++..+++.+|.
T Consensus       481 ~iP~~l~~L~~L~~L~Ls~N~l~g~iP~~l~~~~~~~~~l~~~~N~  526 (623)
T PLN03150        481 SIPESLGQLTSLRILNLNGNSLSGRVPAALGGRLLHRASFNFTDNA  526 (623)
T ss_pred             CCchHHhcCCCCCEEECcCCcccccCChHHhhccccCceEEecCCc
Confidence            899999999999999999999999999887653 244555544443

>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]

Probab=99.39  E-value=5.4e-14  Score=108.22  Aligned_cols=179  Identities=21%  Similarity=0.205  Sum_probs=116.6

Q ss_pred             cceeccCCccccCCCcccCCCCCCcEEEcccCcccCcCCccccCCCCccEEeccC-CcccCCCcHHHHHHHHHHHhhc--
Q 039561            3 QQGLKIQHKFSRSFPTSTGALSSLESLHLHRNHLSGAIPLSLQNGTHFEVLDLRE-NAFIRDVPKWIKKSLLALFMMK--   79 (190)
Q Consensus         3 ~~L~l~~n~l~~~~p~~l~~l~~L~~l~l~~n~~~~~~~~~~~~l~~L~~L~l~~-n~~~~~~p~~~~~~~~~l~~~~--   79 (190)
                      +.+.+..|+|+...+.+|+.+++|+.++++.|.|+..-|..|..++++..|.+.+ |.+ ..+|...+..+.++..+.  
T Consensus        70 veirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI-~~l~k~~F~gL~slqrLllN  148 (498)
T KOG4237|consen   70 VEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKI-TDLPKGAFGGLSSLQRLLLN  148 (498)
T ss_pred             eEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCch-hhhhhhHhhhHHHHHHHhcC
Confidence            4578899999986667899999999999999999977788999999888777666 664 456765555555541110  


Q ss_pred             ------------------------C----Cccc-ccCCCCCCcEEEccCCe-----------------------------
Q 039561           80 ------------------------G----KAFE-YSTNLNVLRVIELSKNN-----------------------------  101 (190)
Q Consensus        80 ------------------------~----~~~~-~~~~~~~L~~L~l~~n~-----------------------------  101 (190)
                                              .    .++. .+..+..++.+.+..|.                             
T Consensus       149 an~i~Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np~icdCnL~wla~~~a~~~ietsgarc~~p  228 (498)
T KOG4237|consen  149 ANHINCIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNPFICDCNLPWLADDLAMNPIETSGARCVSP  228 (498)
T ss_pred             hhhhcchhHHHHHHhhhcchhcccchhhhhhccccccchhccchHhhhcCccccccccchhhhHHhhchhhcccceecch
Confidence                                    0    0000 11111112211111111                             


Q ss_pred             --------------------------------ecccCC-ccCCCCCCCcEEEcccCcceeccCccccCCCCCCEEeCCCC
Q 039561          102 --------------------------------FLGEIA-KGVTNPGASQTLNLSQNSFSRTIPESIGSMKSLESIDFSAN  148 (190)
Q Consensus       102 --------------------------------l~~~~p-~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~l~l~~N  148 (190)
                                                      ..+..| .-|+.++.|+.|++++|.+++.-+.+|.....+++|.+..|
T Consensus       229 ~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~~i~~~aFe~~a~l~eL~L~~N  308 (498)
T KOG4237|consen  229 YRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKITRIEDGAFEGAAELQELYLTRN  308 (498)
T ss_pred             HHHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccceEeccCCCccchhhhhhhcchhhhhhhhcCcc
Confidence                                            001112 12456677777777777777666677777777777777777


Q ss_pred             c----------------eEEeecccccccCCccc-cccccccccccCC-ccc
Q 039561          149 H----------------YLNLSNNNLTGEIPSGI-QLQGFHQSRFAGS-ELC  182 (190)
Q Consensus       149 ~----------------~l~l~~N~l~g~~p~~~-~~~~l~~~~~~~n-~l~  182 (190)
                      +                .|+|.+|+|+-..|-.+ ....+..+++..| ..|
T Consensus       309 ~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~~~l~~l~l~~Np~~C  360 (498)
T KOG4237|consen  309 KLEFVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQTLFSLSTLNLLSNPFNC  360 (498)
T ss_pred             hHHHHHHHhhhccccceeeeecCCeeEEEecccccccceeeeeehccCcccC
Confidence            6                68899999986666666 5777888888888 444

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]

Probab=99.34  E-value=6.5e-14  Score=117.31  Aligned_cols=174  Identities=26%  Similarity=0.380  Sum_probs=103.0

Q ss_pred             CcceeccCCccccCCCcccCCCCCCcEEEcccCcccC----------------------cCCccccCCCCccEEeccCCc
Q 039561            2 LQQGLKIQHKFSRSFPTSTGALSSLESLHLHRNHLSG----------------------AIPLSLQNGTHFEVLDLRENA   59 (190)
Q Consensus         2 L~~L~l~~n~l~~~~p~~l~~l~~L~~l~l~~n~~~~----------------------~~~~~~~~l~~L~~L~l~~n~   59 (190)
                      |++++++.|+++. +|++++.+.+|+.++...|.++.                      .+|.....+++|++|++..|+
T Consensus       243 l~~~dis~n~l~~-lp~wi~~~~nle~l~~n~N~l~~lp~ri~~~~~L~~l~~~~nel~yip~~le~~~sL~tLdL~~N~  321 (1081)
T KOG0618|consen  243 LQYLDISHNNLSN-LPEWIGACANLEALNANHNRLVALPLRISRITSLVSLSAAYNELEYIPPFLEGLKSLRTLDLQSNN  321 (1081)
T ss_pred             ceeeecchhhhhc-chHHHHhcccceEecccchhHHhhHHHHhhhhhHHHHHhhhhhhhhCCCcccccceeeeeeehhcc
Confidence            4567777777776 66777777777777777776641                      345455557888999999998


Q ss_pred             ccCCCcHHHHHHHHH-HHhh-------------------------------cCCcccccCCCCCCcEEEccCCeecccCC
Q 039561           60 FIRDVPKWIKKSLLA-LFMM-------------------------------KGKAFEYSTNLNVLRVIELSKNNFLGEIA  107 (190)
Q Consensus        60 ~~~~~p~~~~~~~~~-l~~~-------------------------------~~~~~~~~~~~~~L~~L~l~~n~l~~~~p  107 (190)
                      +. ..|+.+..-... +..+                               .....+.+-.+.+|++|+|++|++. .+|
T Consensus       322 L~-~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNrL~-~fp  399 (1081)
T KOG0618|consen  322 LP-SLPDNFLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYNRLN-SFP  399 (1081)
T ss_pred             cc-ccchHHHhhhhHHHHHHhhhhccccccccccchhhHHHHHHHHhcCcccccchhhhccccceeeeeecccccc-cCC
Confidence            54 566533221111 1111                               1111122334556666666666655 444


Q ss_pred             c-cCCCCCCCcEEEcccCcceeccCccccCCCCCCEEeCCCCc--------------eEEeeccccc-ccCCcccccccc
Q 039561          108 K-GVTNPGASQTLNLSQNSFSRTIPESIGSMKSLESIDFSANH--------------YLNLSNNNLT-GEIPSGIQLQGF  171 (190)
Q Consensus       108 ~-~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~l~l~~N~--------------~l~l~~N~l~-g~~p~~~~~~~l  171 (190)
                      + .+.++..|++|+|++|+++ .+|..+..++.|++|....|+              .+|++.|+++ +.+|....-.+|
T Consensus       400 as~~~kle~LeeL~LSGNkL~-~Lp~tva~~~~L~tL~ahsN~l~~fPe~~~l~qL~~lDlS~N~L~~~~l~~~~p~p~L  478 (1081)
T KOG0618|consen  400 ASKLRKLEELEELNLSGNKLT-TLPDTVANLGRLHTLRAHSNQLLSFPELAQLPQLKVLDLSCNNLSEVTLPEALPSPNL  478 (1081)
T ss_pred             HHHHhchHHhHHHhcccchhh-hhhHHHHhhhhhHHHhhcCCceeechhhhhcCcceEEecccchhhhhhhhhhCCCccc
Confidence            3 3445555666666666665 555555555566655555554              6888888886 233444444778


Q ss_pred             ccccccCC
Q 039561          172 HQSRFAGS  179 (190)
Q Consensus       172 ~~~~~~~n  179 (190)
                      +++++.||
T Consensus       479 kyLdlSGN  486 (1081)
T KOG0618|consen  479 KYLDLSGN  486 (1081)
T ss_pred             ceeeccCC
Confidence            88888887

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=99.33  E-value=5.7e-12  Score=106.81  Aligned_cols=112  Identities=16%  Similarity=0.205  Sum_probs=63.6

Q ss_pred             cceeccCCccccCCCcccCCCCCCcEEEcccCcccCcCCccccCCCCccEEeccCCcccCCCcHHHHHHHHHHHhhcCCc
Q 039561            3 QQGLKIQHKFSRSFPTSTGALSSLESLHLHRNHLSGAIPLSLQNGTHFEVLDLRENAFIRDVPKWIKKSLLALFMMKGKA   82 (190)
Q Consensus         3 ~~L~l~~n~l~~~~p~~l~~l~~L~~l~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~~~~~l~~~~~~~   82 (190)
                      ..|+++++.++. +|+.+.  ++|+.|+++.|+++ .+|..   .++|++|++++|++. .+|..+. ++..|......+
T Consensus       204 ~~LdLs~~~Lts-LP~~l~--~~L~~L~L~~N~Lt-~LP~l---p~~Lk~LdLs~N~Lt-sLP~lp~-sL~~L~Ls~N~L  274 (788)
T PRK15387        204 AVLNVGESGLTT-LPDCLP--AHITTLVIPDNNLT-SLPAL---PPELRTLEVSGNQLT-SLPVLPP-GLLELSIFSNPL  274 (788)
T ss_pred             cEEEcCCCCCCc-CCcchh--cCCCEEEccCCcCC-CCCCC---CCCCcEEEecCCccC-cccCccc-ccceeeccCCch
Confidence            357788888874 776665  47888888888888 56642   467888888888765 3454322 233221111111


Q ss_pred             ccccCCCCCCcEEEccCCeecccCCccCCCCCCCcEEEcccCcce
Q 039561           83 FEYSTNLNVLRVIELSKNNFLGEIAKGVTNPGASQTLNLSQNSFS  127 (190)
Q Consensus        83 ~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~  127 (190)
                      ...-.....|+.|++++|++. .+|..   .++|+.|++++|.++
T Consensus       275 ~~Lp~lp~~L~~L~Ls~N~Lt-~LP~~---p~~L~~LdLS~N~L~  315 (788)
T PRK15387        275 THLPALPSGLCKLWIFGNQLT-SLPVL---PPGLQELSVSDNQLA  315 (788)
T ss_pred             hhhhhchhhcCEEECcCCccc-ccccc---ccccceeECCCCccc
Confidence            100001234556666666665 44442   345666677666666

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=99.33  E-value=2.2e-13  Score=105.34  Aligned_cols=180  Identities=23%  Similarity=0.284  Sum_probs=105.2

Q ss_pred             CcceeccCCccccC----CCcccCCCCCCcEEEcccCcccC------cCCccccCCCCccEEeccCCcccCCCcHHHHHH
Q 039561            2 LQQGLKIQHKFSRS----FPTSTGALSSLESLHLHRNHLSG------AIPLSLQNGTHFEVLDLRENAFIRDVPKWIKKS   71 (190)
Q Consensus         2 L~~L~l~~n~l~~~----~p~~l~~l~~L~~l~l~~n~~~~------~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~~   71 (190)
                      |++++++++.++..    +++.+...+.++.++++++.+.+      .++..+..+++|+.|++++|.+....+..+.. 
T Consensus        25 L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~-  103 (319)
T cd00116          25 LQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNALGPDGCGVLES-  103 (319)
T ss_pred             ccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcCceeEEEccCCCCChhHHHHHHH-
Confidence            45566666665322    33344455556666666655441      11223344556666666666654433333322 


Q ss_pred             HHH---HHhhc--CC---------cccccCCC-CCCcEEEccCCeeccc----CCccCCCCCCCcEEEcccCcceec---
Q 039561           72 LLA---LFMMK--GK---------AFEYSTNL-NVLRVIELSKNNFLGE----IAKGVTNPGASQTLNLSQNSFSRT---  129 (190)
Q Consensus        72 ~~~---l~~~~--~~---------~~~~~~~~-~~L~~L~l~~n~l~~~----~p~~~~~l~~L~~L~l~~n~l~~~---  129 (190)
                      +..   |..+.  ..         +...+..+ +++++|++++|.+++.    ++..+..+..|+.|++++|.+++.   
T Consensus       104 l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~  183 (319)
T cd00116         104 LLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIGDAGIR  183 (319)
T ss_pred             HhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCCCchHHHH
Confidence            222   22110  00         01122335 7899999999998732    344566678899999999988742   


Q ss_pred             -cCccccCCCCCCEEeCCCCc--------------------eEEeecccccccCCccc--c----ccccccccccCCccc
Q 039561          130 -IPESIGSMKSLESIDFSANH--------------------YLNLSNNNLTGEIPSGI--Q----LQGFHQSRFAGSELC  182 (190)
Q Consensus       130 -~p~~l~~l~~L~~l~l~~N~--------------------~l~l~~N~l~g~~p~~~--~----~~~l~~~~~~~n~l~  182 (190)
                       ++..+...++|+.+++++|.                    +|++++|.+++..+..+  .    ...++.+++++|.+.
T Consensus       184 ~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l~~~~~~~l~~~~~~~~~~L~~L~l~~n~i~  263 (319)
T cd00116         184 ALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLTDAGAAALASALLSPNISLLTLSLSCNDIT  263 (319)
T ss_pred             HHHHHHHhCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCcCchHHHHHHHHHHhccCCCceEEEccCCCCC
Confidence             33345566789999999886                    78999998875322222  1    267888888888654

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>PLN03210 Resistant to P

Probab=99.30  E-value=1.9e-11  Score=108.98  Aligned_cols=148  Identities=19%  Similarity=0.309  Sum_probs=96.1

Q ss_pred             cceeccCCccccCCCcccCCCCCCcEEEcccCcccCcCCccccCCCCccEEeccCCcccCCCcHHHHHHHHHHHhhcCCc
Q 039561            3 QQGLKIQHKFSRSFPTSTGALSSLESLHLHRNHLSGAIPLSLQNGTHFEVLDLRENAFIRDVPKWIKKSLLALFMMKGKA   82 (190)
Q Consensus         3 ~~L~l~~n~l~~~~p~~l~~l~~L~~l~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~~~~~l~~~~~~~   82 (190)
                      +.|.+.++.+.. +|..+ ...+|+.|+++++.+. .++..+..+++|+.++++++.....+|. +              
T Consensus       592 r~L~~~~~~l~~-lP~~f-~~~~L~~L~L~~s~l~-~L~~~~~~l~~Lk~L~Ls~~~~l~~ip~-l--------------  653 (1153)
T PLN03210        592 RLLRWDKYPLRC-MPSNF-RPENLVKLQMQGSKLE-KLWDGVHSLTGLRNIDLRGSKNLKEIPD-L--------------  653 (1153)
T ss_pred             EEEEecCCCCCC-CCCcC-CccCCcEEECcCcccc-ccccccccCCCCCEEECCCCCCcCcCCc-c--------------
Confidence            344444444433 44443 3456666666666665 4555555666666666666554444443 2              


Q ss_pred             ccccCCCCCCcEEEccCCeecccCCccCCCCCCCcEEEcccCcceeccCccccCCCCCCEEeCCCCc-------------
Q 039561           83 FEYSTNLNVLRVIELSKNNFLGEIAKGVTNPGASQTLNLSQNSFSRTIPESIGSMKSLESIDFSANH-------------  149 (190)
Q Consensus        83 ~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~l~l~~N~-------------  149 (190)
                          +.+++|+.|++++|.....+|..++.+++|+.|++++|...+.+|..+ .+++|+.|++++|.             
T Consensus       654 ----s~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i-~l~sL~~L~Lsgc~~L~~~p~~~~nL~  728 (1153)
T PLN03210        654 ----SMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTGI-NLKSLYRLNLSGCSRLKSFPDISTNIS  728 (1153)
T ss_pred             ----ccCCcccEEEecCCCCccccchhhhccCCCCEEeCCCCCCcCccCCcC-CCCCCCEEeCCCCCCccccccccCCcC
Confidence                237788888888876555788888888888888888865444677655 67888888888874             


Q ss_pred             eEEeecccccccCCccccccccccc
Q 039561          150 YLNLSNNNLTGEIPSGIQLQGFHQS  174 (190)
Q Consensus       150 ~l~l~~N~l~g~~p~~~~~~~l~~~  174 (190)
                      +|++++|.+. .+|..+.+.++..+
T Consensus       729 ~L~L~~n~i~-~lP~~~~l~~L~~L  752 (1153)
T PLN03210        729 WLDLDETAIE-EFPSNLRLENLDEL  752 (1153)
T ss_pred             eeecCCCccc-cccccccccccccc
Confidence            6888888887 77776544444433

syringae 6; Provisional

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]

Probab=99.24  E-value=9.4e-13  Score=110.51  Aligned_cols=127  Identities=23%  Similarity=0.294  Sum_probs=97.8

Q ss_pred             CCcceeccCCccccCCCcccCCCCCCcEEEcccCcccCcCCc-cccCCCCccEEeccCCcccCCCcHHHHHHHHHHHhhc
Q 039561            1 MLQQGLKIQHKFSRSFPTSTGALSSLESLHLHRNHLSGAIPL-SLQNGTHFEVLDLRENAFIRDVPKWIKKSLLALFMMK   79 (190)
Q Consensus         1 ~L~~L~l~~n~l~~~~p~~l~~l~~L~~l~l~~n~~~~~~~~-~~~~l~~L~~L~l~~n~~~~~~p~~~~~~~~~l~~~~   79 (190)
                      +|+.|++.+|.++...-+.+-++++|++|++++|++. .+|+ .+..+..|+.|++++|.+. .+|..+..         
T Consensus       360 ~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNrL~-~fpas~~~kle~LeeL~LSGNkL~-~Lp~tva~---------  428 (1081)
T KOG0618|consen  360 ALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYNRLN-SFPASKLRKLEELEELNLSGNKLT-TLPDTVAN---------  428 (1081)
T ss_pred             HHHHHHHhcCcccccchhhhccccceeeeeecccccc-cCCHHHHhchHHhHHHhcccchhh-hhhHHHHh---------
Confidence            3567888899999877677888999999999999998 5664 4667888999999999954 67777766         


Q ss_pred             CCcccccCCCCCCcEEEccCCeecccCCccCCCCCCCcEEEcccCcceeccCccccCCCCCCEEeCCCCc
Q 039561           80 GKAFEYSTNLNVLRVIELSKNNFLGEIAKGVTNPGASQTLNLSQNSFSRTIPESIGSMKSLESIDFSANH  149 (190)
Q Consensus        80 ~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~l~l~~N~  149 (190)
                               ++.|+.|...+|++. .+| .+..++.|+.+|++.|.++...-..--..++|++||+++|.
T Consensus       429 ---------~~~L~tL~ahsN~l~-~fP-e~~~l~qL~~lDlS~N~L~~~~l~~~~p~p~LkyLdlSGN~  487 (1081)
T KOG0618|consen  429 ---------LGRLHTLRAHSNQLL-SFP-ELAQLPQLKVLDLSCNNLSEVTLPEALPSPNLKYLDLSGNT  487 (1081)
T ss_pred             ---------hhhhHHHhhcCCcee-ech-hhhhcCcceEEecccchhhhhhhhhhCCCcccceeeccCCc
Confidence                     777888888888886 667 57788888888888888863322222233778888888887

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=99.22  E-value=2.5e-11  Score=85.72  Aligned_cols=119  Identities=23%  Similarity=0.279  Sum_probs=40.0

Q ss_pred             CcceeccCCccccCCCcccC-CCCCCcEEEcccCcccCcCCccccCCCCccEEeccCCcccCCCcHHH-HHHHHHHHhhc
Q 039561            2 LQQGLKIQHKFSRSFPTSTG-ALSSLESLHLHRNHLSGAIPLSLQNGTHFEVLDLRENAFIRDVPKWI-KKSLLALFMMK   79 (190)
Q Consensus         2 L~~L~l~~n~l~~~~p~~l~-~l~~L~~l~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~-~~~~~~l~~~~   79 (190)
                      +++|++++|.++. + +.++ .+.+|+.|++++|.++ .+. .+..++.|+.|++++|.+.. +++.+ ..         
T Consensus        21 ~~~L~L~~n~I~~-I-e~L~~~l~~L~~L~Ls~N~I~-~l~-~l~~L~~L~~L~L~~N~I~~-i~~~l~~~---------   86 (175)
T PF14580_consen   21 LRELNLRGNQIST-I-ENLGATLDKLEVLDLSNNQIT-KLE-GLPGLPRLKTLDLSNNRISS-ISEGLDKN---------   86 (175)
T ss_dssp             -----------------S--TT-TT--EEE-TTS--S---T-T----TT--EEE--SS---S--CHHHHHH---------
T ss_pred             ccccccccccccc-c-cchhhhhcCCCEEECCCCCCc-ccc-CccChhhhhhcccCCCCCCc-cccchHHh---------
Confidence            4567777777765 2 2444 4667777777777777 443 35567777777777777654 33333 23         


Q ss_pred             CCcccccCCCCCCcEEEccCCeecccC-CccCCCCCCCcEEEcccCcceeccCc----cccCCCCCCEEe
Q 039561           80 GKAFEYSTNLNVLRVIELSKNNFLGEI-AKGVTNPGASQTLNLSQNSFSRTIPE----SIGSMKSLESID  144 (190)
Q Consensus        80 ~~~~~~~~~~~~L~~L~l~~n~l~~~~-p~~~~~l~~L~~L~l~~n~l~~~~p~----~l~~l~~L~~l~  144 (190)
                               +++|++|++++|+|...- -..+..+++|+.|++.+|.++ ..+.    .+..+|+|+.||
T Consensus        87 ---------lp~L~~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~-~~~~YR~~vi~~lP~Lk~LD  146 (175)
T PF14580_consen   87 ---------LPNLQELYLSNNKISDLNELEPLSSLPKLRVLSLEGNPVC-EKKNYRLFVIYKLPSLKVLD  146 (175)
T ss_dssp             ----------TT--EEE-TTS---SCCCCGGGGG-TT--EEE-TT-GGG-GSTTHHHHHHHH-TT-SEET
T ss_pred             ---------CCcCCEEECcCCcCCChHHhHHHHcCCCcceeeccCCccc-chhhHHHHHHHHcChhheeC
Confidence                     677777777777775311 133456677777777777776 2232    235567777665

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=99.21  E-value=1.1e-11  Score=99.00  Aligned_cols=157  Identities=28%  Similarity=0.421  Sum_probs=101.9

Q ss_pred             CcceeccCCccccCCCcccCCCC-CCcEEEcccCcccCcCCccccCCCCccEEeccCCcccCCCcHHHHHHHHHHHhhcC
Q 039561            2 LQQGLKIQHKFSRSFPTSTGALS-SLESLHLHRNHLSGAIPLSLQNGTHFEVLDLRENAFIRDVPKWIKKSLLALFMMKG   80 (190)
Q Consensus         2 L~~L~l~~n~l~~~~p~~l~~l~-~L~~l~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~~~~~l~~~~~   80 (190)
                      ++.+++.+|.++. +++....+. +|+.|++++|.+. .+|..+..++.|+.|++++|++. .+|.....          
T Consensus       118 l~~L~l~~n~i~~-i~~~~~~~~~nL~~L~l~~N~i~-~l~~~~~~l~~L~~L~l~~N~l~-~l~~~~~~----------  184 (394)
T COG4886         118 LTSLDLDNNNITD-IPPLIGLLKSNLKELDLSDNKIE-SLPSPLRNLPNLKNLDLSFNDLS-DLPKLLSN----------  184 (394)
T ss_pred             eeEEecCCccccc-Cccccccchhhcccccccccchh-hhhhhhhccccccccccCCchhh-hhhhhhhh----------
Confidence            4567777888776 666666664 8888888888888 66666777888888888888855 34544323          


Q ss_pred             CcccccCCCCCCcEEEccCCeecccCCccCCCCCCCcEEEcccCcceeccCccccCCCCCCEEeCCCCc-----------
Q 039561           81 KAFEYSTNLNVLRVIELSKNNFLGEIAKGVTNPGASQTLNLSQNSFSRTIPESIGSMKSLESIDFSANH-----------  149 (190)
Q Consensus        81 ~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~l~l~~N~-----------  149 (190)
                              .+.++.|++++|++. .+|........|+.+.+++|.+. ..+..+..+.++..+.+.+|+           
T Consensus       185 --------~~~L~~L~ls~N~i~-~l~~~~~~~~~L~~l~~~~N~~~-~~~~~~~~~~~l~~l~l~~n~~~~~~~~~~~l  254 (394)
T COG4886         185 --------LSNLNNLDLSGNKIS-DLPPEIELLSALEELDLSNNSII-ELLSSLSNLKNLSGLELSNNKLEDLPESIGNL  254 (394)
T ss_pred             --------hhhhhheeccCCccc-cCchhhhhhhhhhhhhhcCCcce-ecchhhhhcccccccccCCceeeeccchhccc
Confidence                    555666666666665 55554444555666666666433 344455555555555555554           


Q ss_pred             ----eEEeecccccccCCccccccccccccccCCccc
Q 039561          150 ----YLNLSNNNLTGEIPSGIQLQGFHQSRFAGSELC  182 (190)
Q Consensus       150 ----~l~l~~N~l~g~~p~~~~~~~l~~~~~~~n~l~  182 (190)
                          ++++++|.++ .++....+..++.+.+++|.+.
T Consensus       255 ~~l~~L~~s~n~i~-~i~~~~~~~~l~~L~~s~n~~~  290 (394)
T COG4886         255 SNLETLDLSNNQIS-SISSLGSLTNLRELDLSGNSLS  290 (394)
T ss_pred             cccceecccccccc-ccccccccCccCEEeccCcccc
Confidence                5677777776 5555446677777777777443

>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]

Probab=99.14  E-value=1.1e-12  Score=105.21  Aligned_cols=161  Identities=24%  Similarity=0.291  Sum_probs=102.1

Q ss_pred             CcceeccCCccccCCCcccCCCCCCcEEEcccCcccCcCCccccCCCCccEEeccCCcccCCCcHHHHHHHHHHHhh---
Q 039561            2 LQQGLKIQHKFSRSFPTSTGALSSLESLHLHRNHLSGAIPLSLQNGTHFEVLDLRENAFIRDVPKWIKKSLLALFMM---   78 (190)
Q Consensus         2 L~~L~l~~n~l~~~~p~~l~~l~~L~~l~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~~~~~l~~~---   78 (190)
                      |+.+.+..|.+-. +|..+.++..|++++++.|++. .+|..+..++ |+.|-+++|++ ..+|+.+.. ...+..+   
T Consensus       100 Le~liLy~n~~r~-ip~~i~~L~~lt~l~ls~NqlS-~lp~~lC~lp-Lkvli~sNNkl-~~lp~~ig~-~~tl~~ld~s  174 (722)
T KOG0532|consen  100 LESLILYHNCIRT-IPEAICNLEALTFLDLSSNQLS-HLPDGLCDLP-LKVLIVSNNKL-TSLPEEIGL-LPTLAHLDVS  174 (722)
T ss_pred             HHHHHHHhcccee-cchhhhhhhHHHHhhhccchhh-cCChhhhcCc-ceeEEEecCcc-ccCCccccc-chhHHHhhhh
Confidence            4455666666654 7888888888999999999888 7777776664 78888888884 456766652 3333222   


Q ss_pred             c---CCcccccCCCCCCcEEEccCCeecccCCccCCCCCCCcEEEcccCcceeccCccccCCCCCCEEeCCCCceEEeec
Q 039561           79 K---GKAFEYSTNLNVLRVIELSKNNFLGEIAKGVTNPGASQTLNLSQNSFSRTIPESIGSMKSLESIDFSANHYLNLSN  155 (190)
Q Consensus        79 ~---~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~l~l~~N~~l~l~~  155 (190)
                      +   ...|..++.+.+++.|.+..|++. .+|..+. .-.|..||++.|+++ .+|-.|.+|+.|+        ++-|.+
T Consensus       175 ~nei~slpsql~~l~slr~l~vrRn~l~-~lp~El~-~LpLi~lDfScNkis-~iPv~fr~m~~Lq--------~l~Len  243 (722)
T KOG0532|consen  175 KNEIQSLPSQLGYLTSLRDLNVRRNHLE-DLPEELC-SLPLIRLDFSCNKIS-YLPVDFRKMRHLQ--------VLQLEN  243 (722)
T ss_pred             hhhhhhchHHhhhHHHHHHHHHhhhhhh-hCCHHHh-CCceeeeecccCcee-ecchhhhhhhhhe--------eeeecc
Confidence            1   123444455666666666666665 5565555 344556777777776 6666666666666        556788


Q ss_pred             ccccccCCcccc----ccccccccccCC
Q 039561          156 NNLTGEIPSGIQ----LQGFHQSRFAGS  179 (190)
Q Consensus       156 N~l~g~~p~~~~----~~~l~~~~~~~n  179 (190)
                      |.++ ..|+.+.    ...|+++..+..
T Consensus       244 NPLq-SPPAqIC~kGkVHIFKyL~~qA~  270 (722)
T KOG0532|consen  244 NPLQ-SPPAQICEKGKVHIFKYLSTQAC  270 (722)
T ss_pred             CCCC-CChHHHHhccceeeeeeecchhc
Confidence            8887 5566552    333455544433

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]

Probab=99.09  E-value=1.3e-11  Score=92.63  Aligned_cols=123  Identities=21%  Similarity=0.338  Sum_probs=84.8

Q ss_pred             CcceeccCCccccCCCcccCCCCCCcEEEcccCcccCcCCccccCCCCccEEeccCCcccCCCcHHHHHHHHHHHhhcCC
Q 039561            2 LQQGLKIQHKFSRSFPTSTGALSSLESLHLHRNHLSGAIPLSLQNGTHFEVLDLRENAFIRDVPKWIKKSLLALFMMKGK   81 (190)
Q Consensus         2 L~~L~l~~n~l~~~~p~~l~~l~~L~~l~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~~~~~l~~~~~~   81 (190)
                      |+++++++|.++. +.+++.-.|.+++|++++|.++ .+.. +..+++|+.||+++|.+.. +-.|--.           
T Consensus       286 LtelDLS~N~I~~-iDESvKL~Pkir~L~lS~N~i~-~v~n-La~L~~L~~LDLS~N~Ls~-~~Gwh~K-----------  350 (490)
T KOG1259|consen  286 LTELDLSGNLITQ-IDESVKLAPKLRRLILSQNRIR-TVQN-LAELPQLQLLDLSGNLLAE-CVGWHLK-----------  350 (490)
T ss_pred             hhhccccccchhh-hhhhhhhccceeEEecccccee-eehh-hhhcccceEeecccchhHh-hhhhHhh-----------
Confidence            5677888888776 6666777788888888888887 4443 6677888888888887543 2222222           


Q ss_pred             cccccCCCCCCcEEEccCCeecccCCccCCCCCCCcEEEcccCcceeccC--ccccCCCCCCEEeCCCCc
Q 039561           82 AFEYSTNLNVLRVIELSKNNFLGEIAKGVTNPGASQTLNLSQNSFSRTIP--ESIGSMKSLESIDFSANH  149 (190)
Q Consensus        82 ~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p--~~l~~l~~L~~l~l~~N~  149 (190)
                             +.+++.|.+++|.+. .+ ..++.+.+|..||+++|+|. .+.  ..+++++.|+++.+.+|.
T Consensus       351 -------LGNIKtL~La~N~iE-~L-SGL~KLYSLvnLDl~~N~Ie-~ldeV~~IG~LPCLE~l~L~~NP  410 (490)
T KOG1259|consen  351 -------LGNIKTLKLAQNKIE-TL-SGLRKLYSLVNLDLSSNQIE-ELDEVNHIGNLPCLETLRLTGNP  410 (490)
T ss_pred             -------hcCEeeeehhhhhHh-hh-hhhHhhhhheeccccccchh-hHHHhcccccccHHHHHhhcCCC
Confidence                   677888888888875 22 33667778888888888876 332  356777778776654443

>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]

Probab=99.08  E-value=2e-11  Score=94.32  Aligned_cols=136  Identities=17%  Similarity=0.222  Sum_probs=85.1

Q ss_pred             CCccccCCCcccCCCCCCcEEEcccCcccCcCCccccCCCCccEEeccCCcccCCCcHHHHHHHHHHHhh---c-CCc--
Q 039561            9 QHKFSRSFPTSTGALSSLESLHLHRNHLSGAIPLSLQNGTHFEVLDLRENAFIRDVPKWIKKSLLALFMM---K-GKA--   82 (190)
Q Consensus         9 ~n~l~~~~p~~l~~l~~L~~l~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~~~~~l~~~---~-~~~--   82 (190)
                      +-.++. +|..+.  +.-+.+++..|+|+...+.+|+.+++|+.+|+++|+++...|+.+.. ++++..+   . +.+  
T Consensus        55 ~~GL~e-VP~~LP--~~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~G-L~~l~~Lvlyg~NkI~~  130 (498)
T KOG4237|consen   55 GKGLTE-VPANLP--PETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKG-LASLLSLVLYGNNKITD  130 (498)
T ss_pred             CCCccc-CcccCC--CcceEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhh-hHhhhHHHhhcCCchhh
Confidence            334443 554332  45678899999999666678999999999999999998888887764 7777443   2 222  


Q ss_pred             -c-cccCCCCCCcEEEccCCeecccCCccCCCCCCCcEEEcccCcceeccCc-cccCCCCCCEEeCCCCc
Q 039561           83 -F-EYSTNLNVLRVIELSKNNFLGEIAKGVTNPGASQTLNLSQNSFSRTIPE-SIGSMKSLESIDFSANH  149 (190)
Q Consensus        83 -~-~~~~~~~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~-~l~~l~~L~~l~l~~N~  149 (190)
                       | ..|+++..++.|.+.-|++.....+.+..++++..|.+-.|.+. .++. .+..+.+++++.+..|.
T Consensus       131 l~k~~F~gL~slqrLllNan~i~Cir~~al~dL~~l~lLslyDn~~q-~i~~~tf~~l~~i~tlhlA~np  199 (498)
T KOG4237|consen  131 LPKGAFGGLSSLQRLLLNANHINCIRQDALRDLPSLSLLSLYDNKIQ-SICKGTFQGLAAIKTLHLAQNP  199 (498)
T ss_pred             hhhhHhhhHHHHHHHhcChhhhcchhHHHHHHhhhcchhcccchhhh-hhccccccchhccchHhhhcCc
Confidence             2 24555666666666556655444455555555555555555554 3332 44445555555444443

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=99.03  E-value=3.8e-10  Score=66.09  Aligned_cols=60  Identities=25%  Similarity=0.391  Sum_probs=52.5

Q ss_pred             CCCcEEEccCCeecccCCccCCCCCCCcEEEcccCcceeccCccccCCCCCCEEeCCCCc
Q 039561           90 NVLRVIELSKNNFLGEIAKGVTNPGASQTLNLSQNSFSRTIPESIGSMKSLESIDFSANH  149 (190)
Q Consensus        90 ~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~l~l~~N~  149 (190)
                      ++|++|++++|++....+.+|..+++|++|++++|.++...|..|..+++|+++++++|+
T Consensus         1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~   60 (61)
T PF13855_consen    1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNN   60 (61)
T ss_dssp             TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSS
T ss_pred             CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCc
Confidence            468999999999995555788999999999999999997777899999999988877774

...

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=99.00  E-value=2.7e-10  Score=90.89  Aligned_cols=142  Identities=30%  Similarity=0.421  Sum_probs=105.4

Q ss_pred             CcceeccCCccccCCCcccCCCCCCcEEEcccCcccCcCCccccCCCCccEEeccCCcccCCCcHHH--HHHHHHHHhhc
Q 039561            2 LQQGLKIQHKFSRSFPTSTGALSSLESLHLHRNHLSGAIPLSLQNGTHFEVLDLRENAFIRDVPKWI--KKSLLALFMMK   79 (190)
Q Consensus         2 L~~L~l~~n~l~~~~p~~l~~l~~L~~l~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~--~~~~~~l~~~~   79 (190)
                      |+.|++++|.+.. +|..+..+++|+.|++++|+++ .+|......+.|+.|++++|++. .+|..+  ...+..+....
T Consensus       142 L~~L~l~~N~i~~-l~~~~~~l~~L~~L~l~~N~l~-~l~~~~~~~~~L~~L~ls~N~i~-~l~~~~~~~~~L~~l~~~~  218 (394)
T COG4886         142 LKELDLSDNKIES-LPSPLRNLPNLKNLDLSFNDLS-DLPKLLSNLSNLNNLDLSGNKIS-DLPPEIELLSALEELDLSN  218 (394)
T ss_pred             cccccccccchhh-hhhhhhccccccccccCCchhh-hhhhhhhhhhhhhheeccCCccc-cCchhhhhhhhhhhhhhcC
Confidence            6789999999987 6667899999999999999999 77766557889999999999965 566643  22233333333


Q ss_pred             C---CcccccCCCCCCcEEEccCCeecccCCccCCCCCCCcEEEcccCcceeccCccccCCCCCCEEeCCCCc
Q 039561           80 G---KAFEYSTNLNVLRVIELSKNNFLGEIAKGVTNPGASQTLNLSQNSFSRTIPESIGSMKSLESIDFSANH  149 (190)
Q Consensus        80 ~---~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~l~l~~N~  149 (190)
                      .   ..+..+..+..+..+.+.+|++. .++..++.+..++.|++++|.++ .++. ++...+++.+++++|.
T Consensus       219 N~~~~~~~~~~~~~~l~~l~l~~n~~~-~~~~~~~~l~~l~~L~~s~n~i~-~i~~-~~~~~~l~~L~~s~n~  288 (394)
T COG4886         219 NSIIELLSSLSNLKNLSGLELSNNKLE-DLPESIGNLSNLETLDLSNNQIS-SISS-LGSLTNLRELDLSGNS  288 (394)
T ss_pred             CcceecchhhhhcccccccccCCceee-eccchhccccccceecccccccc-cccc-ccccCccCEEeccCcc
Confidence            3   23455666777777778888776 44667778888888888888887 4444 7777788877766665

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=98.96  E-value=7.3e-10  Score=64.84  Aligned_cols=60  Identities=28%  Similarity=0.339  Sum_probs=53.7

Q ss_pred             CCcceeccCCccccCCCcccCCCCCCcEEEcccCcccCcCCccccCCCCccEEeccCCcc
Q 039561            1 MLQQGLKIQHKFSRSFPTSTGALSSLESLHLHRNHLSGAIPLSLQNGTHFEVLDLRENAF   60 (190)
Q Consensus         1 ~L~~L~l~~n~l~~~~p~~l~~l~~L~~l~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~   60 (190)
                      .|++|++++|+++...+..+..+++|+++++++|.++...+..|..+++|+++++++|++
T Consensus         2 ~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l   61 (61)
T PF13855_consen    2 NLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL   61 (61)
T ss_dssp             TESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred             cCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence            478999999999986567889999999999999999966678899999999999999974

...

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=98.87  E-value=1.7e-09  Score=76.48  Aligned_cols=109  Identities=29%  Similarity=0.392  Sum_probs=37.3

Q ss_pred             cCCCCCCcEEEcccCcccCcCCcccc-CCCCccEEeccCCcccCCCcHHHHHHHHHHHhhcCCcccccCCCCCCcEEEcc
Q 039561           20 TGALSSLESLHLHRNHLSGAIPLSLQ-NGTHFEVLDLRENAFIRDVPKWIKKSLLALFMMKGKAFEYSTNLNVLRVIELS   98 (190)
Q Consensus        20 l~~l~~L~~l~l~~n~~~~~~~~~~~-~l~~L~~L~l~~n~~~~~~p~~~~~~~~~l~~~~~~~~~~~~~~~~L~~L~l~   98 (190)
                      +-+..+++.|++++|.|+ .+. .+. .+.+|+.|++++|.+.. +. .+..                  ++.|+.|+++
T Consensus        15 ~~n~~~~~~L~L~~n~I~-~Ie-~L~~~l~~L~~L~Ls~N~I~~-l~-~l~~------------------L~~L~~L~L~   72 (175)
T PF14580_consen   15 YNNPVKLRELNLRGNQIS-TIE-NLGATLDKLEVLDLSNNQITK-LE-GLPG------------------LPRLKTLDLS   72 (175)
T ss_dssp             -----------------------S--TT-TT--EEE-TTS--S---T-T----------------------TT--EEE--
T ss_pred             cccccccccccccccccc-ccc-chhhhhcCCCEEECCCCCCcc-cc-CccC------------------hhhhhhcccC
Confidence            445667899999999998 443 454 47899999999999764 32 2333                  8899999999


Q ss_pred             CCeecccCCccC-CCCCCCcEEEcccCcceeccC-ccccCCCCCCEEeCCCCceEEeeccccc
Q 039561           99 KNNFLGEIAKGV-TNPGASQTLNLSQNSFSRTIP-ESIGSMKSLESIDFSANHYLNLSNNNLT  159 (190)
Q Consensus        99 ~n~l~~~~p~~~-~~l~~L~~L~l~~n~l~~~~p-~~l~~l~~L~~l~l~~N~~l~l~~N~l~  159 (190)
                      +|.++ .+.+.+ ..++.|+.|++++|.|...-. ..+..+++|+.|+        +.+|+++
T Consensus        73 ~N~I~-~i~~~l~~~lp~L~~L~L~~N~I~~l~~l~~L~~l~~L~~L~--------L~~NPv~  126 (175)
T PF14580_consen   73 NNRIS-SISEGLDKNLPNLQELYLSNNKISDLNELEPLSSLPKLRVLS--------LEGNPVC  126 (175)
T ss_dssp             SS----S-CHHHHHH-TT--EEE-TTS---SCCCCGGGGG-TT--EEE---------TT-GGG
T ss_pred             CCCCC-ccccchHHhCCcCCEEECcCCcCCChHHhHHHHcCCCcceee--------ccCCccc
Confidence            99998 454434 358899999999999974211 3456677788655        5566665

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]

Probab=98.79  E-value=8.5e-10  Score=83.05  Aligned_cols=103  Identities=25%  Similarity=0.304  Sum_probs=69.5

Q ss_pred             CCCCcEEEcccCcccCcCCccccCCCCccEEeccCCcccCCCcHHHHHHHHHHHhhcCCcccccCCCCCCcEEEccCCee
Q 039561           23 LSSLESLHLHRNHLSGAIPLSLQNGTHFEVLDLRENAFIRDVPKWIKKSLLALFMMKGKAFEYSTNLNVLRVIELSKNNF  102 (190)
Q Consensus        23 l~~L~~l~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~~~~~l~~~~~~~~~~~~~~~~L~~L~l~~n~l  102 (190)
                      ...|+.+++++|.|+ .+.++..-.|.++.|++++|.+... .. +..                  +++|+.|++++|.+
T Consensus       283 Wq~LtelDLS~N~I~-~iDESvKL~Pkir~L~lS~N~i~~v-~n-La~------------------L~~L~~LDLS~N~L  341 (490)
T KOG1259|consen  283 WQELTELDLSGNLIT-QIDESVKLAPKLRRLILSQNRIRTV-QN-LAE------------------LPQLQLLDLSGNLL  341 (490)
T ss_pred             Hhhhhhccccccchh-hhhhhhhhccceeEEeccccceeee-hh-hhh------------------cccceEeecccchh
Confidence            355777888888887 7777777778888888888886532 21 333                  77788888888887


Q ss_pred             cccCCccCCCCCCCcEEEcccCcceeccCccccCCCCCCEEeCCCCc
Q 039561          103 LGEIAKGVTNPGASQTLNLSQNSFSRTIPESIGSMKSLESIDFSANH  149 (190)
Q Consensus       103 ~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~l~l~~N~  149 (190)
                      + .+-.|-..+-++++|.+++|.+.  --+.+.++-+|..||++.|+
T Consensus       342 s-~~~Gwh~KLGNIKtL~La~N~iE--~LSGL~KLYSLvnLDl~~N~  385 (490)
T KOG1259|consen  342 A-ECVGWHLKLGNIKTLKLAQNKIE--TLSGLRKLYSLVNLDLSSNQ  385 (490)
T ss_pred             H-hhhhhHhhhcCEeeeehhhhhHh--hhhhhHhhhhheeccccccc
Confidence            6 55666566777788888888775  22345555566655544444

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]

Probab=98.64  E-value=4.3e-09  Score=82.50  Aligned_cols=40  Identities=33%  Similarity=0.326  Sum_probs=17.1

Q ss_pred             CCCCCcEEEcccCcccCcCCccc-cCCCCccEEeccCCccc
Q 039561           22 ALSSLESLHLHRNHLSGAIPLSL-QNGTHFEVLDLRENAFI   61 (190)
Q Consensus        22 ~l~~L~~l~l~~n~~~~~~~~~~-~~l~~L~~L~l~~n~~~   61 (190)
                      .+|+|+.|+++.|++.....+.. ..+++++.|.++.|.++
T Consensus       170 qLp~Le~LNls~Nrl~~~~~s~~~~~l~~lK~L~l~~CGls  210 (505)
T KOG3207|consen  170 QLPSLENLNLSSNRLSNFISSNTTLLLSHLKQLVLNSCGLS  210 (505)
T ss_pred             hcccchhcccccccccCCccccchhhhhhhheEEeccCCCC
Confidence            44555555555555441111111 12345555555555544

>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]

Probab=98.62  E-value=9.6e-09  Score=82.65  Aligned_cols=155  Identities=24%  Similarity=0.310  Sum_probs=107.3

Q ss_pred             cceeccCCccccCCCcccCCCCCCcEEEcccCcccCcCCccccCCCCccEEeccCCcccCCCcHHHHHHHHHHHhhcCCc
Q 039561            3 QQGLKIQHKFSRSFPTSTGALSSLESLHLHRNHLSGAIPLSLQNGTHFEVLDLRENAFIRDVPKWIKKSLLALFMMKGKA   82 (190)
Q Consensus         3 ~~L~l~~n~l~~~~p~~l~~l~~L~~l~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~~~~~l~~~~~~~   82 (190)
                      +.+.+..|.+.. +-..+..++++..+++.+|.+. .+...+..+++|++|++++|.+...-+-  ..            
T Consensus        75 ~~l~l~~n~i~~-~~~~l~~~~~l~~l~l~~n~i~-~i~~~l~~~~~L~~L~ls~N~I~~i~~l--~~------------  138 (414)
T KOG0531|consen   75 KELNLRQNLIAK-ILNHLSKLKSLEALDLYDNKIE-KIENLLSSLVNLQVLDLSFNKITKLEGL--ST------------  138 (414)
T ss_pred             Hhhccchhhhhh-hhcccccccceeeeeccccchh-hcccchhhhhcchheeccccccccccch--hh------------
Confidence            344566666665 3335778899999999999998 5554366789999999999997654332  22            


Q ss_pred             ccccCCCCCCcEEEccCCeecccCCccCCCCCCCcEEEcccCcceeccCcc-ccCCCCCCEEeCCCCc------------
Q 039561           83 FEYSTNLNVLRVIELSKNNFLGEIAKGVTNPGASQTLNLSQNSFSRTIPES-IGSMKSLESIDFSANH------------  149 (190)
Q Consensus        83 ~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~-l~~l~~L~~l~l~~N~------------  149 (190)
                            ++.|+.|++.+|.++ .+ ..+..+..|+.+++++|.++. +... ...+.+++.+++..|.            
T Consensus       139 ------l~~L~~L~l~~N~i~-~~-~~~~~l~~L~~l~l~~n~i~~-ie~~~~~~~~~l~~l~l~~n~i~~i~~~~~~~~  209 (414)
T KOG0531|consen  139 ------LTLLKELNLSGNLIS-DI-SGLESLKSLKLLDLSYNRIVD-IENDELSELISLEELDLGGNSIREIEGLDLLKK  209 (414)
T ss_pred             ------ccchhhheeccCcch-hc-cCCccchhhhcccCCcchhhh-hhhhhhhhccchHHHhccCCchhcccchHHHHH
Confidence                  666889999999987 33 346668899999999999883 3332 4677788888888887            


Q ss_pred             --eEEeecccccccCCccccccc--cccccccCCcccC
Q 039561          150 --YLNLSNNNLTGEIPSGIQLQG--FHQSRFAGSELCG  183 (190)
Q Consensus       150 --~l~l~~N~l~g~~p~~~~~~~--l~~~~~~~n~l~~  183 (190)
                        .+++..|.++ .+-.......  ++.+.+.+|.++.
T Consensus       210 l~~~~l~~n~i~-~~~~l~~~~~~~L~~l~l~~n~i~~  246 (414)
T KOG0531|consen  210 LVLLSLLDNKIS-KLEGLNELVMLHLRELYLSGNRISR  246 (414)
T ss_pred             HHHhhcccccce-eccCcccchhHHHHHHhcccCcccc
Confidence              4567777776 3322212222  6677777775443

>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]

Probab=98.59  E-value=1.2e-09  Score=90.61  Aligned_cols=129  Identities=29%  Similarity=0.332  Sum_probs=80.5

Q ss_pred             CCcEEEcccCcccCcCCccccCCCCccEEeccCCcccCCCcHHHHHHHHHHHhhcCCcccccCCCCCCcEEEccCCeecc
Q 039561           25 SLESLHLHRNHLSGAIPLSLQNGTHFEVLDLRENAFIRDVPKWIKKSLLALFMMKGKAFEYSTNLNVLRVIELSKNNFLG  104 (190)
Q Consensus        25 ~L~~l~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~~~~~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~  104 (190)
                      .|.+.+.++|.++ ....++.-++.++.|++++|++....  .+..                  ++.|++||++.|.+. 
T Consensus       165 ~L~~a~fsyN~L~-~mD~SLqll~ale~LnLshNk~~~v~--~Lr~------------------l~~LkhLDlsyN~L~-  222 (1096)
T KOG1859|consen  165 KLATASFSYNRLV-LMDESLQLLPALESLNLSHNKFTKVD--NLRR------------------LPKLKHLDLSYNCLR-  222 (1096)
T ss_pred             hHhhhhcchhhHH-hHHHHHHHHHHhhhhccchhhhhhhH--HHHh------------------cccccccccccchhc-
Confidence            3555666666666 55556666677777777777764321  3333                  677777777777776 


Q ss_pred             cCCccCCCCCCCcEEEcccCcceeccCccccCCCCCCEEeCCCCceEEeeccccccc--CCccccccccccccccCCccc
Q 039561          105 EIAKGVTNPGASQTLNLSQNSFSRTIPESIGSMKSLESIDFSANHYLNLSNNNLTGE--IPSGIQLQGFHQSRFAGSELC  182 (190)
Q Consensus       105 ~~p~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~l~l~~N~~l~l~~N~l~g~--~p~~~~~~~l~~~~~~~n~l~  182 (190)
                      .+|.--..-.+|+.|.+++|.++ .+ ..+.++++|+        .||+++|-+.+.  +-..+.+..|..+++.||.+|
T Consensus       223 ~vp~l~~~gc~L~~L~lrnN~l~-tL-~gie~LksL~--------~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl~  292 (1096)
T KOG1859|consen  223 HVPQLSMVGCKLQLLNLRNNALT-TL-RGIENLKSLY--------GLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPLC  292 (1096)
T ss_pred             cccccchhhhhheeeeecccHHH-hh-hhHHhhhhhh--------ccchhHhhhhcchhhhHHHHHHHHHHHhhcCCccc
Confidence            55542222235777777777776 22 2345555566        455777777632  222346888899999999887


Q ss_pred             CCC
Q 039561          183 GAP  185 (190)
Q Consensus       183 ~~~  185 (190)
                      -+|
T Consensus       293 c~p  295 (1096)
T KOG1859|consen  293 CAP  295 (1096)
T ss_pred             cCH
Confidence            655

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]

Probab=98.42  E-value=2.7e-08  Score=78.07  Aligned_cols=39  Identities=21%  Similarity=0.181  Sum_probs=19.4

Q ss_pred             CCCCCcEEEcccCcccCcCC--ccccCCCCccEEeccCCccc
Q 039561           22 ALSSLESLHLHRNHLSGAIP--LSLQNGTHFEVLDLRENAFI   61 (190)
Q Consensus        22 ~l~~L~~l~l~~n~~~~~~~--~~~~~l~~L~~L~l~~n~~~   61 (190)
                      ++.+|+.+.+.+..+. ..+  .....+++++.||+++|-+.
T Consensus       119 n~kkL~~IsLdn~~V~-~~~~~~~~k~~~~v~~LdLS~NL~~  159 (505)
T KOG3207|consen  119 NLKKLREISLDNYRVE-DAGIEEYSKILPNVRDLDLSRNLFH  159 (505)
T ss_pred             hHHhhhheeecCcccc-ccchhhhhhhCCcceeecchhhhHH
Confidence            4555555555555544 333  13344555555555555543

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]

Probab=98.34  E-value=3.5e-07  Score=79.53  Aligned_cols=101  Identities=27%  Similarity=0.320  Sum_probs=45.7

Q ss_pred             CCcEEEcccCc--ccCcCCccccCCCCccEEeccCCcccCCCcHHHHHHHHHHHhhcCCcccccCCCCCCcEEEccCCee
Q 039561           25 SLESLHLHRNH--LSGAIPLSLQNGTHFEVLDLRENAFIRDVPKWIKKSLLALFMMKGKAFEYSTNLNVLRVIELSKNNF  102 (190)
Q Consensus        25 ~L~~l~l~~n~--~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~~~~~l~~~~~~~~~~~~~~~~L~~L~l~~n~l  102 (190)
                      .|+.|-+..|.  +....+..|..++.|+.||+++|.-.+.+|..++.                  +-+|++|++++..+
T Consensus       546 ~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~------------------Li~LryL~L~~t~I  607 (889)
T KOG4658|consen  546 KLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGE------------------LVHLRYLDLSDTGI  607 (889)
T ss_pred             ccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhh------------------hhhhhcccccCCCc
Confidence            45555555543  22111222444555555555555444455555544                  44444444544444


Q ss_pred             cccCCccCCCCCCCcEEEcccCcceeccCccccCCCCCCEEe
Q 039561          103 LGEIAKGVTNPGASQTLNLSQNSFSRTIPESIGSMKSLESID  144 (190)
Q Consensus       103 ~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~l~  144 (190)
                      . .+|..++++.+|++|++..+.-...+|.....+.+|++|.
T Consensus       608 ~-~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~  648 (889)
T KOG4658|consen  608 S-HLPSGLGNLKKLIYLNLEVTGRLESIPGILLELQSLRVLR  648 (889)
T ss_pred             c-ccchHHHHHHhhheeccccccccccccchhhhcccccEEE
Confidence            4 4444444444455554444433323333333344444443

>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]

Probab=98.28  E-value=7.8e-08  Score=73.54  Aligned_cols=39  Identities=21%  Similarity=0.304  Sum_probs=17.1

Q ss_pred             CCCCCcEEEcccCcccCc----CCccccCCCCccEEeccCCcc
Q 039561           22 ALSSLESLHLHRNHLSGA----IPLSLQNGTHFEVLDLRENAF   60 (190)
Q Consensus        22 ~l~~L~~l~l~~n~~~~~----~~~~~~~l~~L~~L~l~~n~~   60 (190)
                      .-+.|+++...+|++...    +...|...+.|+.+.+..|.+
T Consensus       155 ~~~~Lrv~i~~rNrlen~ga~~~A~~~~~~~~leevr~~qN~I  197 (382)
T KOG1909|consen  155 SKPKLRVFICGRNRLENGGATALAEAFQSHPTLEEVRLSQNGI  197 (382)
T ss_pred             CCcceEEEEeeccccccccHHHHHHHHHhccccceEEEecccc
Confidence            345555555555554411    112233334455555554443

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]

Probab=98.24  E-value=5.9e-07  Score=78.10  Aligned_cols=104  Identities=20%  Similarity=0.209  Sum_probs=75.1

Q ss_pred             CcceeccCCc--cccCCCcccCCCCCCcEEEcccCcccCcCCccccCCCCccEEeccCCcccCCCcHHHHHHHHHHHhhc
Q 039561            2 LQQGLKIQHK--FSRSFPTSTGALSSLESLHLHRNHLSGAIPLSLQNGTHFEVLDLRENAFIRDVPKWIKKSLLALFMMK   79 (190)
Q Consensus         2 L~~L~l~~n~--l~~~~p~~l~~l~~L~~l~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~~~~~l~~~~   79 (190)
                      |++|.+.+|.  +.......|..++.|++||+++|.--+.+|..++.+-+|++|++++..+. .+|..+..         
T Consensus       547 L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~I~-~LP~~l~~---------  616 (889)
T KOG4658|consen  547 LRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTGIS-HLPSGLGN---------  616 (889)
T ss_pred             cceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccCCCcc-ccchHHHH---------
Confidence            4667777775  33323334777999999999998876799999999999999999999965 78998887         


Q ss_pred             CCcccccCCCCCCcEEEccCCeecccCCccCCCCCCCcEEEcccC
Q 039561           80 GKAFEYSTNLNVLRVIELSKNNFLGEIAKGVTNPGASQTLNLSQN  124 (190)
Q Consensus        80 ~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n  124 (190)
                               +..|++|++..+.-...+|.....+.+|++|.+...
T Consensus       617 ---------Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s  652 (889)
T KOG4658|consen  617 ---------LKKLIYLNLEVTGRLESIPGILLELQSLRVLRLPRS  652 (889)
T ss_pred             ---------HHhhheeccccccccccccchhhhcccccEEEeecc
Confidence                     566666666655533344454555666766666544

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=98.23  E-value=1.1e-06  Score=47.67  Aligned_cols=36  Identities=33%  Similarity=0.450  Sum_probs=25.2

Q ss_pred             CCcEEEccCCeecccCCccCCCCCCCcEEEcccCcce
Q 039561           91 VLRVIELSKNNFLGEIAKGVTNPGASQTLNLSQNSFS  127 (190)
Q Consensus        91 ~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~  127 (190)
                      +|++|++++|+++ .+|+.++.+++|+.|++++|.++
T Consensus         2 ~L~~L~l~~N~i~-~l~~~l~~l~~L~~L~l~~N~i~   37 (44)
T PF12799_consen    2 NLEELDLSNNQIT-DLPPELSNLPNLETLNLSNNPIS   37 (44)
T ss_dssp             T-SEEEETSSS-S-SHGGHGTTCTTSSEEEETSSCCS
T ss_pred             cceEEEccCCCCc-ccCchHhCCCCCCEEEecCCCCC
Confidence            5777777777777 55666777777777777777776

...

>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]

Probab=98.15  E-value=1.9e-07  Score=77.86  Aligned_cols=136  Identities=24%  Similarity=0.280  Sum_probs=89.7

Q ss_pred             CccccCCCCccEEeccCCcccCCCc-HHHHHHHHHH---------H---hh-cCCcccccCCCCCCcEEEccCCeecccC
Q 039561           41 PLSLQNGTHFEVLDLRENAFIRDVP-KWIKKSLLAL---------F---MM-KGKAFEYSTNLNVLRVIELSKNNFLGEI  106 (190)
Q Consensus        41 ~~~~~~l~~L~~L~l~~n~~~~~~p-~~~~~~~~~l---------~---~~-~~~~~~~~~~~~~L~~L~l~~n~l~~~~  106 (190)
                      |-.+..+..|++|.++++.++.... ..+...+..|         .   .. .+.+...+ -|..|...+.+.|.+. .+
T Consensus       102 pi~ifpF~sLr~LElrg~~L~~~~GL~~lr~qLe~LIC~~Sl~Al~~v~ascggd~~ns~-~Wn~L~~a~fsyN~L~-~m  179 (1096)
T KOG1859|consen  102 PISIFPFRSLRVLELRGCDLSTAKGLQELRHQLEKLICHNSLDALRHVFASCGGDISNSP-VWNKLATASFSYNRLV-LM  179 (1096)
T ss_pred             CceeccccceeeEEecCcchhhhhhhHHHHHhhhhhhhhccHHHHHHHHHHhccccccch-hhhhHhhhhcchhhHH-hH
Confidence            5566778899999999988764211 1122222222         1   11 12222111 1456777788888876 56


Q ss_pred             CccCCCCCCCcEEEcccCcceeccCccccCCCCCCEEeCCCCc---------------eEEeecccccccCCcccccccc
Q 039561          107 AKGVTNPGASQTLNLSQNSFSRTIPESIGSMKSLESIDFSANH---------------YLNLSNNNLTGEIPSGIQLQGF  171 (190)
Q Consensus       107 p~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~l~l~~N~---------------~l~l~~N~l~g~~p~~~~~~~l  171 (190)
                      ...+.-+++++.|+|++|+++ ... .+..+++|++||+++|+               .|.+++|.++ ++-..-++++|
T Consensus       180 D~SLqll~ale~LnLshNk~~-~v~-~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc~L~~L~lrnN~l~-tL~gie~LksL  256 (1096)
T KOG1859|consen  180 DESLQLLPALESLNLSHNKFT-KVD-NLRRLPKLKHLDLSYNCLRHVPQLSMVGCKLQLLNLRNNALT-TLRGIENLKSL  256 (1096)
T ss_pred             HHHHHHHHHhhhhccchhhhh-hhH-HHHhcccccccccccchhccccccchhhhhheeeeecccHHH-hhhhHHhhhhh
Confidence            666777788999999999987 333 78888889988888887               6788888887 44443467777


Q ss_pred             ccccccCCcc
Q 039561          172 HQSRFAGSEL  181 (190)
Q Consensus       172 ~~~~~~~n~l  181 (190)
                      ..++++.|-+
T Consensus       257 ~~LDlsyNll  266 (1096)
T KOG1859|consen  257 YGLDLSYNLL  266 (1096)
T ss_pred             hccchhHhhh
Confidence            7888877743

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=98.14  E-value=2.8e-06  Score=45.98  Aligned_cols=36  Identities=33%  Similarity=0.549  Sum_probs=17.5

Q ss_pred             CCcEEEcccCcccCcCCccccCCCCccEEeccCCccc
Q 039561           25 SLESLHLHRNHLSGAIPLSLQNGTHFEVLDLRENAFI   61 (190)
Q Consensus        25 ~L~~l~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~   61 (190)
                      +|++|++++|+++ .+|..+..+++|+.|++++|.+.
T Consensus         2 ~L~~L~l~~N~i~-~l~~~l~~l~~L~~L~l~~N~i~   37 (44)
T PF12799_consen    2 NLEELDLSNNQIT-DLPPELSNLPNLETLNLSNNPIS   37 (44)
T ss_dssp             T-SEEEETSSS-S-SHGGHGTTCTTSSEEEETSSCCS
T ss_pred             cceEEEccCCCCc-ccCchHhCCCCCCEEEecCCCCC
Confidence            4555555555555 44444555555555555555543

...

>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]

Probab=98.14  E-value=8.4e-07  Score=68.03  Aligned_cols=61  Identities=16%  Similarity=0.051  Sum_probs=43.5

Q ss_pred             CcceeccCCccccCCCc----ccCCCCCCcEEEcccCcccCcCC-------------ccccCCCCccEEeccCCcccC
Q 039561            2 LQQGLKIQHKFSRSFPT----STGALSSLESLHLHRNHLSGAIP-------------LSLQNGTHFEVLDLRENAFIR   62 (190)
Q Consensus         2 L~~L~l~~n~l~~~~p~----~l~~l~~L~~l~l~~n~~~~~~~-------------~~~~~l~~L~~L~l~~n~~~~   62 (190)
                      |++++|+.|-+...-+.    -+.....|+.|++.+|.+...-.             .....-+.|+.+...+|.+..
T Consensus        94 L~~ldLSDNA~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrlen  171 (382)
T KOG1909|consen   94 LQKLDLSDNAFGPKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRLEN  171 (382)
T ss_pred             eeEeeccccccCccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeecccccc
Confidence            67899999988754332    46678899999999998862111             122345789999999999653

>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]

Probab=98.12  E-value=2.2e-07  Score=74.79  Aligned_cols=103  Identities=20%  Similarity=0.212  Sum_probs=64.7

Q ss_pred             CCcceeccCCccccCCCcccCCCCCCcEEEcccCcccCcCCccccCCCCccEEeccCCcccCCCcHHHHHHHHHHHhhcC
Q 039561            1 MLQQGLKIQHKFSRSFPTSTGALSSLESLHLHRNHLSGAIPLSLQNGTHFEVLDLRENAFIRDVPKWIKKSLLALFMMKG   80 (190)
Q Consensus         1 ~L~~L~l~~n~l~~~~p~~l~~l~~L~~l~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~~~~~l~~~~~   80 (190)
                      +|+.+++.+|.+.. +...+..+++|+++++++|.|+...+  +..++.|+.|++++|.+... . .+.           
T Consensus        96 ~l~~l~l~~n~i~~-i~~~l~~~~~L~~L~ls~N~I~~i~~--l~~l~~L~~L~l~~N~i~~~-~-~~~-----------  159 (414)
T KOG0531|consen   96 SLEALDLYDNKIEK-IENLLSSLVNLQVLDLSFNKITKLEG--LSTLTLLKELNLSGNLISDI-S-GLE-----------  159 (414)
T ss_pred             ceeeeeccccchhh-cccchhhhhcchheeccccccccccc--hhhccchhhheeccCcchhc-c-CCc-----------
Confidence            35678888888887 44336778999999999999984333  45667789999999986532 1 111           


Q ss_pred             CcccccCCCCCCcEEEccCCeecccCCcc-CCCCCCCcEEEcccCcce
Q 039561           81 KAFEYSTNLNVLRVIELSKNNFLGEIAKG-VTNPGASQTLNLSQNSFS  127 (190)
Q Consensus        81 ~~~~~~~~~~~L~~L~l~~n~l~~~~p~~-~~~l~~L~~L~l~~n~l~  127 (190)
                             .+..++.+++++|.+...-+ . ...+.+++.+.++.|.+.
T Consensus       160 -------~l~~L~~l~l~~n~i~~ie~-~~~~~~~~l~~l~l~~n~i~  199 (414)
T KOG0531|consen  160 -------SLKSLKLLDLSYNRIVDIEN-DELSELISLEELDLGGNSIR  199 (414)
T ss_pred             -------cchhhhcccCCcchhhhhhh-hhhhhccchHHHhccCCchh
Confidence                   14455666666666552222 1 244555555555555544

>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]

Probab=98.12  E-value=1.2e-05  Score=57.51  Aligned_cols=103  Identities=20%  Similarity=0.269  Sum_probs=75.5

Q ss_pred             CCCcEEEcccCcccCcCCccccCCCCccEEeccCCcccCCCcHHHHHHHHHHHhhcCCcccccCCCCCCcEEEccCCeec
Q 039561           24 SSLESLHLHRNHLSGAIPLSLQNGTHFEVLDLRENAFIRDVPKWIKKSLLALFMMKGKAFEYSTNLNVLRVIELSKNNFL  103 (190)
Q Consensus        24 ~~L~~l~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~~~~~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~  103 (190)
                      .....+++++|.+. ..+ .|..++.|.+|.+.+|.+....|..-..                  ++++..|.+.+|++.
T Consensus        42 d~~d~iDLtdNdl~-~l~-~lp~l~rL~tLll~nNrIt~I~p~L~~~------------------~p~l~~L~LtnNsi~  101 (233)
T KOG1644|consen   42 DQFDAIDLTDNDLR-KLD-NLPHLPRLHTLLLNNNRITRIDPDLDTF------------------LPNLKTLILTNNSIQ  101 (233)
T ss_pred             cccceecccccchh-hcc-cCCCccccceEEecCCcceeeccchhhh------------------ccccceEEecCcchh
Confidence            45677889999987 444 5677889999999999988766654433                  778999999999886


Q ss_pred             ccCC--ccCCCCCCCcEEEcccCcceeccCc----cccCCCCCCEEeCCCC
Q 039561          104 GEIA--KGVTNPGASQTLNLSQNSFSRTIPE----SIGSMKSLESIDFSAN  148 (190)
Q Consensus       104 ~~~p--~~~~~l~~L~~L~l~~n~l~~~~p~----~l~~l~~L~~l~l~~N  148 (190)
                       .+.  +.+..+++|+.|.+-+|.++ ..+.    -+..+++|+.||++.=
T Consensus       102 -~l~dl~pLa~~p~L~~Ltll~Npv~-~k~~YR~yvl~klp~l~~LDF~kV  150 (233)
T KOG1644|consen  102 -ELGDLDPLASCPKLEYLTLLGNPVE-HKKNYRLYVLYKLPSLRTLDFQKV  150 (233)
T ss_pred             -hhhhcchhccCCccceeeecCCchh-cccCceeEEEEecCcceEeehhhh
Confidence             332  23566789999999888887 3332    2467788888886544

>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]

Probab=98.09  E-value=2.1e-06  Score=64.18  Aligned_cols=142  Identities=15%  Similarity=0.208  Sum_probs=92.7

Q ss_pred             CcceeccCCccccC----CCcccCCCCCCcEEEcccCccc---CcCC-------ccccCCCCccEEeccCCcccCCCcHH
Q 039561            2 LQQGLKIQHKFSRS----FPTSTGALSSLESLHLHRNHLS---GAIP-------LSLQNGTHFEVLDLRENAFIRDVPKW   67 (190)
Q Consensus         2 L~~L~l~~n~l~~~----~p~~l~~l~~L~~l~l~~n~~~---~~~~-------~~~~~l~~L~~L~l~~n~~~~~~p~~   67 (190)
                      ++.+++++|.|...    +...+.+-.+|+..++++-...   ..++       ..+..+|+++..+++.|.|....|+.
T Consensus        32 ~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg~~~~e~  111 (388)
T COG5238          32 LVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFGSEFPEE  111 (388)
T ss_pred             eeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccCcccchH
Confidence            46678888887754    3345556677888777664322   1122       23456788999999999988888887


Q ss_pred             HHHHHHHHHhhcCCcccccCCCCCCcEEEccCCeecccCC-ccC-------------CCCCCCcEEEcccCcceeccCc-
Q 039561           68 IKKSLLALFMMKGKAFEYSTNLNVLRVIELSKNNFLGEIA-KGV-------------TNPGASQTLNLSQNSFSRTIPE-  132 (190)
Q Consensus        68 ~~~~~~~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p-~~~-------------~~l~~L~~L~l~~n~l~~~~p~-  132 (190)
                      +..              .|+....+.+|.+++|.+. .+. ..+             ..-+.|+....++|++.. .+. 
T Consensus       112 L~d--------------~is~~t~l~HL~l~NnGlG-p~aG~rigkal~~la~nKKaa~kp~Le~vicgrNRlen-gs~~  175 (388)
T COG5238         112 LGD--------------LISSSTDLVHLKLNNNGLG-PIAGGRIGKALFHLAYNKKAADKPKLEVVICGRNRLEN-GSKE  175 (388)
T ss_pred             HHH--------------HHhcCCCceeEEeecCCCC-ccchhHHHHHHHHHHHHhhhccCCCceEEEeccchhcc-CcHH
Confidence            766              4444777888888888875 221 111             234678888888887752 222 


Q ss_pred             ----cccCCCCCCEEeCCCCc---------------------eEEeeccccc
Q 039561          133 ----SIGSMKSLESIDFSANH---------------------YLNLSNNNLT  159 (190)
Q Consensus       133 ----~l~~l~~L~~l~l~~N~---------------------~l~l~~N~l~  159 (190)
                          .+.....|+.+.+..|-                     .||+.+|.|+
T Consensus       176 ~~a~~l~sh~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft  227 (388)
T COG5238         176 LSAALLESHENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFT  227 (388)
T ss_pred             HHHHHHHhhcCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchh
Confidence                23334567777777775                     6778888776

>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]

Probab=97.93  E-value=5.1e-07  Score=60.73  Aligned_cols=107  Identities=16%  Similarity=0.110  Sum_probs=82.0

Q ss_pred             ceeccCCccccCCCc---ccCCCCCCcEEEcccCcccCcCCccccC-CCCccEEeccCCcccCCCcHHHHHHHHHHHhhc
Q 039561            4 QGLKIQHKFSRSFPT---STGALSSLESLHLHRNHLSGAIPLSLQN-GTHFEVLDLRENAFIRDVPKWIKKSLLALFMMK   79 (190)
Q Consensus         4 ~L~l~~n~l~~~~p~---~l~~l~~L~~l~l~~n~~~~~~~~~~~~-l~~L~~L~l~~n~~~~~~p~~~~~~~~~l~~~~   79 (190)
                      .++++.|.+-. +++   .+.....|+..++++|.+. .+|..|.. ++..+++++++|.+. .+|..+..         
T Consensus        31 ~ldLssc~lm~-i~davy~l~~~~el~~i~ls~N~fk-~fp~kft~kf~t~t~lNl~~neis-dvPeE~Aa---------   98 (177)
T KOG4579|consen   31 FLDLSSCQLMY-IADAVYMLSKGYELTKISLSDNGFK-KFPKKFTIKFPTATTLNLANNEIS-DVPEELAA---------   98 (177)
T ss_pred             hcccccchhhH-HHHHHHHHhCCceEEEEecccchhh-hCCHHHhhccchhhhhhcchhhhh-hchHHHhh---------
Confidence            35677776543 343   3445667788899999998 77877754 458899999999965 57887766         


Q ss_pred             CCcccccCCCCCCcEEEccCCeecccCCccCCCCCCCcEEEcccCcceeccCcc
Q 039561           80 GKAFEYSTNLNVLRVIELSKNNFLGEIAKGVTNPGASQTLNLSQNSFSRTIPES  133 (190)
Q Consensus        80 ~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~  133 (190)
                               |+.|+.++++.|.+. ..|..+..+.+|..|+..+|.+. .+|-.
T Consensus        99 ---------m~aLr~lNl~~N~l~-~~p~vi~~L~~l~~Lds~~na~~-eid~d  141 (177)
T KOG4579|consen   99 ---------MPALRSLNLRFNPLN-AEPRVIAPLIKLDMLDSPENARA-EIDVD  141 (177)
T ss_pred             ---------hHHhhhcccccCccc-cchHHHHHHHhHHHhcCCCCccc-cCcHH
Confidence                     888999999999998 67877777899999999888876 56644

>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]

Probab=97.90  E-value=2.7e-07  Score=62.08  Aligned_cols=104  Identities=23%  Similarity=0.355  Sum_probs=72.6

Q ss_pred             CCcEEEcccCcccCcCC---ccccCCCCccEEeccCCcccCCCcHHHHHHHHHHHhhcCCcccccCCCCCCcEEEccCCe
Q 039561           25 SLESLHLHRNHLSGAIP---LSLQNGTHFEVLDLRENAFIRDVPKWIKKSLLALFMMKGKAFEYSTNLNVLRVIELSKNN  101 (190)
Q Consensus        25 ~L~~l~l~~n~~~~~~~---~~~~~l~~L~~L~l~~n~~~~~~p~~~~~~~~~l~~~~~~~~~~~~~~~~L~~L~l~~n~  101 (190)
                      .+..++++++.+- .++   ..+.....|...++++|.+. .+|+.+..                 ..+.++.+++++|.
T Consensus        28 E~h~ldLssc~lm-~i~davy~l~~~~el~~i~ls~N~fk-~fp~kft~-----------------kf~t~t~lNl~~ne   88 (177)
T KOG4579|consen   28 ELHFLDLSSCQLM-YIADAVYMLSKGYELTKISLSDNGFK-KFPKKFTI-----------------KFPTATTLNLANNE   88 (177)
T ss_pred             Hhhhcccccchhh-HHHHHHHHHhCCceEEEEecccchhh-hCCHHHhh-----------------ccchhhhhhcchhh
Confidence            4556677777654 333   23344567777888888854 46665543                 25577888888888


Q ss_pred             ecccCCccCCCCCCCcEEEcccCcceeccCccccCCCCCCEEeCCCCc
Q 039561          102 FLGEIAKGVTNPGASQTLNLSQNSFSRTIPESIGSMKSLESIDFSANH  149 (190)
Q Consensus       102 l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~l~l~~N~  149 (190)
                      ++ .+|..+..++.|+.++++.|.+. ..|.-+..+.++..|+..+|.
T Consensus        89 is-dvPeE~Aam~aLr~lNl~~N~l~-~~p~vi~~L~~l~~Lds~~na  134 (177)
T KOG4579|consen   89 IS-DVPEELAAMPALRSLNLRFNPLN-AEPRVIAPLIKLDMLDSPENA  134 (177)
T ss_pred             hh-hchHHHhhhHHhhhcccccCccc-cchHHHHHHHhHHHhcCCCCc
Confidence            87 77888888888888888888887 667767667777766655555

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=97.86  E-value=6.2e-06  Score=70.17  Aligned_cols=128  Identities=18%  Similarity=0.185  Sum_probs=73.5

Q ss_pred             CcceeccCCccc-cCCCcccCC-CCCCcEEEcccCcccC-cCCccccCCCCccEEeccCCcccCCCcHHHHHHHHHHHhh
Q 039561            2 LQQGLKIQHKFS-RSFPTSTGA-LSSLESLHLHRNHLSG-AIPLSLQNGTHFEVLDLRENAFIRDVPKWIKKSLLALFMM   78 (190)
Q Consensus         2 L~~L~l~~n~l~-~~~p~~l~~-l~~L~~l~l~~n~~~~-~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~~~~~l~~~   78 (190)
                      |+.|+++|...- ...|..++. +|+|+.|.+.+-.+.. ++.....++++|..||++++++...  .+++.        
T Consensus       124 L~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl--~GIS~--------  193 (699)
T KOG3665|consen  124 LQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL--SGISR--------  193 (699)
T ss_pred             hhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc--HHHhc--------
Confidence            567788775432 224444554 7999999998887752 2334456789999999999997543  34443        


Q ss_pred             cCCcccccCCCCCCcEEEccCCeecc-cCCccCCCCCCCcEEEcccCcceecc--C----ccccCCCCCCEEeCCCCc
Q 039561           79 KGKAFEYSTNLNVLRVIELSKNNFLG-EIAKGVTNPGASQTLNLSQNSFSRTI--P----ESIGSMKSLESIDFSANH  149 (190)
Q Consensus        79 ~~~~~~~~~~~~~L~~L~l~~n~l~~-~~p~~~~~l~~L~~L~l~~n~l~~~~--p----~~l~~l~~L~~l~l~~N~  149 (190)
                                +++|++|.+.+-.+.. .--..+.++++|++||+|........  .    +.-..+|+|+.||.++..
T Consensus       194 ----------LknLq~L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTd  261 (699)
T KOG3665|consen  194 ----------LKNLQVLSMRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTD  261 (699)
T ss_pred             ----------cccHHHHhccCCCCCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcc
Confidence                      5566666555444431 01113445666666666665433111  0    111345666666555443

>PRK15386 type III secretion protein GogB; Provisional

Probab=97.63  E-value=0.00023  Score=56.88  Aligned_cols=32  Identities=31%  Similarity=0.399  Sum_probs=17.4

Q ss_pred             CCCcEEEcccCcceeccCccccCCCCCCEEeCCCC
Q 039561          114 GASQTLNLSQNSFSRTIPESIGSMKSLESIDFSAN  148 (190)
Q Consensus       114 ~~L~~L~l~~n~l~~~~p~~l~~l~~L~~l~l~~N  148 (190)
                      .+|++|++++|... ..|..+.  .+|+.|+++.+
T Consensus       156 sSLk~L~Is~c~~i-~LP~~LP--~SLk~L~ls~n  187 (426)
T PRK15386        156 PSLKTLSLTGCSNI-ILPEKLP--ESLQSITLHIE  187 (426)
T ss_pred             CcccEEEecCCCcc-cCccccc--ccCcEEEeccc
Confidence            36677777766654 3343322  35666665444

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]

Probab=97.61  E-value=3.7e-06  Score=63.63  Aligned_cols=144  Identities=18%  Similarity=0.129  Sum_probs=93.0

Q ss_pred             CcceeccCCccccCCCcccCCCCCCcEEEcccCc-ccCcCC--ccccCCCCccEEeccCCcccCCCc----HHHHHHHHH
Q 039561            2 LQQGLKIQHKFSRSFPTSTGALSSLESLHLHRNH-LSGAIP--LSLQNGTHFEVLDLRENAFIRDVP----KWIKKSLLA   74 (190)
Q Consensus         2 L~~L~l~~n~l~~~~p~~l~~l~~L~~l~l~~n~-~~~~~~--~~~~~l~~L~~L~l~~n~~~~~~p----~~~~~~~~~   74 (190)
                      |+.++++|+++...+...++.-.+|+.++++.+. ++ ...  -.+..++.|..|+++|+.+....-    ..++..+.+
T Consensus       212 Lk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t-~n~~~ll~~scs~L~~LNlsWc~l~~~~Vtv~V~hise~l~~  290 (419)
T KOG2120|consen  212 LKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFT-ENALQLLLSSCSRLDELNLSWCFLFTEKVTVAVAHISETLTQ  290 (419)
T ss_pred             hhhccccccccCcHHHHHHhccccceeeccccccccc-hhHHHHHHHhhhhHhhcCchHhhccchhhhHHHhhhchhhhh
Confidence            5677888888888777778888889999998865 33 222  234567888999999988654321    122223333


Q ss_pred             HHhhc-------CCcccccCCCCCCcEEEccCCe-ecccCCccCCCCCCCcEEEcccCcceeccCcc---ccCCCCCCEE
Q 039561           75 LFMMK-------GKAFEYSTNLNVLRVIELSKNN-FLGEIAKGVTNPGASQTLNLSQNSFSRTIPES---IGSMKSLESI  143 (190)
Q Consensus        75 l~~~~-------~~~~~~~~~~~~L~~L~l~~n~-l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~---l~~l~~L~~l  143 (190)
                      |+...       ..+..-...++++.+|||+.|. ++......+..++.|++|.+++|+.  .+|..   ++..++|.+|
T Consensus       291 LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lSlsRCY~--i~p~~~~~l~s~psl~yL  368 (419)
T KOG2120|consen  291 LNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHLSLSRCYD--IIPETLLELNSKPSLVYL  368 (419)
T ss_pred             hhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHHhcchheeeehhhhcC--CChHHeeeeccCcceEEE
Confidence            32110       0011112358899999999765 4433445567789999999999875  45653   5677888877


Q ss_pred             eCCCC
Q 039561          144 DFSAN  148 (190)
Q Consensus       144 ~l~~N  148 (190)
                      |+.+.
T Consensus       369 dv~g~  373 (419)
T KOG2120|consen  369 DVFGC  373 (419)
T ss_pred             Eeccc
Confidence            76444

>PRK15386 type III secretion protein GogB; Provisional

Probab=97.47  E-value=0.00054  Score=54.78  Aligned_cols=14  Identities=7%  Similarity=0.105  Sum_probs=6.5

Q ss_pred             CCCcEEEcccCccc
Q 039561           24 SSLESLHLHRNHLS   37 (190)
Q Consensus        24 ~~L~~l~l~~n~~~   37 (190)
                      .+++.|++++|.++
T Consensus        52 ~~l~~L~Is~c~L~   65 (426)
T PRK15386         52 RASGRLYIKDCDIE   65 (426)
T ss_pred             cCCCEEEeCCCCCc
Confidence            44444444444444

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=97.29  E-value=7.7e-05  Score=63.69  Aligned_cols=60  Identities=20%  Similarity=0.320  Sum_probs=45.4

Q ss_pred             CCCCCcEEEccCCeecccCCccCCCCCCCcEEEcccCccee-ccCccccCCCCCCEEeCCCCc
Q 039561           88 NLNVLRVIELSKNNFLGEIAKGVTNPGASQTLNLSQNSFSR-TIPESIGSMKSLESIDFSANH  149 (190)
Q Consensus        88 ~~~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~-~~p~~l~~l~~L~~l~l~~N~  149 (190)
                      ++++|..||+++.+++ .+ ..++.+++|+.|.+.+=.+.. ..-..+..+++|+.||++...
T Consensus       171 sFpNL~sLDIS~TnI~-nl-~GIS~LknLq~L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~  231 (699)
T KOG3665|consen  171 SFPNLRSLDISGTNIS-NL-SGISRLKNLQVLSMRNLEFESYQDLIDLFNLKKLRVLDISRDK  231 (699)
T ss_pred             ccCccceeecCCCCcc-Cc-HHHhccccHHHHhccCCCCCchhhHHHHhcccCCCeeeccccc
Confidence            4889999999999887 33 557888999999887766652 112346678899988888776

>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]

Probab=97.01  E-value=0.0013  Score=47.34  Aligned_cols=101  Identities=15%  Similarity=0.091  Sum_probs=70.3

Q ss_pred             cceeccCCccccCCCcccCCCCCCcEEEcccCcccCcCCccccCCCCccEEeccCCcccCCCcHHHHHHHHHHHhhcCCc
Q 039561            3 QQGLKIQHKFSRSFPTSTGALSSLESLHLHRNHLSGAIPLSLQNGTHFEVLDLRENAFIRDVPKWIKKSLLALFMMKGKA   82 (190)
Q Consensus         3 ~~L~l~~n~l~~~~p~~l~~l~~L~~l~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~~~~~l~~~~~~~   82 (190)
                      ..+|+.+|++-. ++ .+..++.|.+|.+..|+|+..-|.--.-++.++.|.+.+|.+.. +.+.-.  +          
T Consensus        45 d~iDLtdNdl~~-l~-~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~-l~dl~p--L----------  109 (233)
T KOG1644|consen   45 DAIDLTDNDLRK-LD-NLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQE-LGDLDP--L----------  109 (233)
T ss_pred             ceecccccchhh-cc-cCCCccccceEEecCCcceeeccchhhhccccceEEecCcchhh-hhhcch--h----------
Confidence            457888888765 32 57788999999999999994434333346789999999999643 322111  1          


Q ss_pred             ccccCCCCCCcEEEccCCeecccCCc----cCCCCCCCcEEEccc
Q 039561           83 FEYSTNLNVLRVIELSKNNFLGEIAK----GVTNPGASQTLNLSQ  123 (190)
Q Consensus        83 ~~~~~~~~~L~~L~l~~n~l~~~~p~----~~~~l~~L~~L~l~~  123 (190)
                          ..++.|+.|.+-+|.++. .+.    .+..++.|++||...
T Consensus       110 ----a~~p~L~~Ltll~Npv~~-k~~YR~yvl~klp~l~~LDF~k  149 (233)
T KOG1644|consen  110 ----ASCPKLEYLTLLGNPVEH-KKNYRLYVLYKLPSLRTLDFQK  149 (233)
T ss_pred             ----ccCCccceeeecCCchhc-ccCceeEEEEecCcceEeehhh
Confidence                128889999999998862 221    245678899998754

>KOG2982 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.96  E-value=0.00084  Score=51.23  Aligned_cols=64  Identities=19%  Similarity=0.073  Sum_probs=45.3

Q ss_pred             cceeccCCccccC--CCcccCCCCCCcEEEcccCcccCcCCccccCCCCccEEeccCCcccCCCcH
Q 039561            3 QQGLKIQHKFSRS--FPTSTGALSSLESLHLHRNHLSGAIPLSLQNGTHFEVLDLRENAFIRDVPK   66 (190)
Q Consensus         3 ~~L~l~~n~l~~~--~p~~l~~l~~L~~l~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~   66 (190)
                      +.+++.+|.++..  +...+.++|.|++|+++.|.+...+...-..+.+|+.+.+.+..+.+....
T Consensus        74 ~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~w~~~~  139 (418)
T KOG2982|consen   74 KELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLSWTQST  139 (418)
T ss_pred             hhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEEEEcCCCCChhhhh
Confidence            5678888887742  333456899999999999998855443224667889998888777654443

>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=96.93  E-value=0.00062  Score=50.63  Aligned_cols=102  Identities=20%  Similarity=0.225  Sum_probs=60.2

Q ss_pred             cCCCCCCcEEEcccCcccCcCCccccCCCCccEEeccCCcc--cCCCcHHHHHHHHHHHhhcCCcccccCCCCCCcEEEc
Q 039561           20 TGALSSLESLHLHRNHLSGAIPLSLQNGTHFEVLDLRENAF--IRDVPKWIKKSLLALFMMKGKAFEYSTNLNVLRVIEL   97 (190)
Q Consensus        20 l~~l~~L~~l~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~--~~~~p~~~~~~~~~l~~~~~~~~~~~~~~~~L~~L~l   97 (190)
                      ...+..|+.+.+.+..++. + ..+..++.|++|.++.|.+  .+.++...-.                  +++|+++++
T Consensus        39 ~d~~~~le~ls~~n~gltt-~-~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~------------------~P~l~~l~l   98 (260)
T KOG2739|consen   39 TDEFVELELLSVINVGLTT-L-TNFPKLPKLKKLELSDNYRRVSGGLEVLAEK------------------APNLKVLNL   98 (260)
T ss_pred             cccccchhhhhhhccceee-c-ccCCCcchhhhhcccCCcccccccceehhhh------------------CCceeEEee
Confidence            3345666666666666652 2 1345677888888888843  3333332222                  678888888


Q ss_pred             cCCeecccCCccC---CCCCCCcEEEcccCcceeccCc----cccCCCCCCEEe
Q 039561           98 SKNNFLGEIAKGV---TNPGASQTLNLSQNSFSRTIPE----SIGSMKSLESID  144 (190)
Q Consensus        98 ~~n~l~~~~p~~~---~~l~~L~~L~l~~n~l~~~~p~----~l~~l~~L~~l~  144 (190)
                      ++|++..  +.++   ..+..|..|++.+|..++ +.+    .+.-+++|.++|
T Consensus        99 s~Nki~~--lstl~pl~~l~nL~~Ldl~n~~~~~-l~dyre~vf~ll~~L~~LD  149 (260)
T KOG2739|consen   99 SGNKIKD--LSTLRPLKELENLKSLDLFNCSVTN-LDDYREKVFLLLPSLKYLD  149 (260)
T ss_pred             cCCcccc--ccccchhhhhcchhhhhcccCCccc-cccHHHHHHHHhhhhcccc
Confidence            8888752  3333   344556677777776663 222    234566676665

>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]

Probab=96.62  E-value=0.0029  Score=47.84  Aligned_cols=128  Identities=17%  Similarity=0.237  Sum_probs=81.6

Q ss_pred             ccCCCCCCcEEEcccCcccCcCCcc----ccCCCCccEEeccCCcccCCCcHHHHHHHHHHHhhcCC--cc---------
Q 039561           19 STGALSSLESLHLHRNHLSGAIPLS----LQNGTHFEVLDLRENAFIRDVPKWIKKSLLALFMMKGK--AF---------   83 (190)
Q Consensus        19 ~l~~l~~L~~l~l~~n~~~~~~~~~----~~~l~~L~~L~l~~n~~~~~~p~~~~~~~~~l~~~~~~--~~---------   83 (190)
                      .+..+|+++.+++|+|.+....|..    +...+.+.+|.+++|.+......-++..+..|-..+..  .|         
T Consensus        87 aLlkcp~l~~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgr  166 (388)
T COG5238          87 ALLKCPRLQKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGR  166 (388)
T ss_pred             HHhcCCcceeeeccccccCcccchHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEecc
Confidence            4567899999999999998666643    45667899999999987655555555445444221100  00         


Q ss_pred             ---c---------ccCCCCCCcEEEccCCeecccCCcc--------CCCCCCCcEEEcccCcceec----cCccccCCCC
Q 039561           84 ---E---------YSTNLNVLRVIELSKNNFLGEIAKG--------VTNPGASQTLNLSQNSFSRT----IPESIGSMKS  139 (190)
Q Consensus        84 ---~---------~~~~~~~L~~L~l~~n~l~~~~p~~--------~~~l~~L~~L~l~~n~l~~~----~p~~l~~l~~  139 (190)
                         +         .+.....++++.+..|.|.   |..        +..+.+|+.||+..|-++-.    +...+..++.
T Consensus       167 NRlengs~~~~a~~l~sh~~lk~vki~qNgIr---pegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~~  243 (388)
T COG5238         167 NRLENGSKELSAALLESHENLKEVKIQQNGIR---PEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWNL  243 (388)
T ss_pred             chhccCcHHHHHHHHHhhcCceeEEeeecCcC---cchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhcccch
Confidence               0         0112346777888887775   332        23467888999988887622    2234456667


Q ss_pred             CCEEeCCCCc
Q 039561          140 LESIDFSANH  149 (190)
Q Consensus       140 L~~l~l~~N~  149 (190)
                      |+.|.+..|.
T Consensus       244 lrEL~lnDCl  253 (388)
T COG5238         244 LRELRLNDCL  253 (388)
T ss_pred             hhhccccchh
Confidence            7888877775

>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=96.41  E-value=0.0027  Score=28.66  Aligned_cols=19  Identities=32%  Similarity=0.506  Sum_probs=9.5

Q ss_pred             CcEEEccCCeecccCCccCC
Q 039561           92 LRVIELSKNNFLGEIAKGVT  111 (190)
Q Consensus        92 L~~L~l~~n~l~~~~p~~~~  111 (190)
                      |++|++++|+++ .+|.+++
T Consensus         2 L~~Ldls~n~l~-~ip~~~~   20 (22)
T PF00560_consen    2 LEYLDLSGNNLT-SIPSSFS   20 (22)
T ss_dssp             ESEEEETSSEES-EEGTTTT
T ss_pred             ccEEECCCCcCE-eCChhhc
Confidence            455555555555 4444443

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]

Probab=96.33  E-value=0.00011  Score=55.86  Aligned_cols=148  Identities=16%  Similarity=0.067  Sum_probs=70.9

Q ss_pred             CcceeccCCccccC-CCcccCCCCCCcEEEcccCcccCcCCccccCCCCccEEeccCCcccCCCc-HHHHHHHHHHHhhc
Q 039561            2 LQQGLKIQHKFSRS-FPTSTGALSSLESLHLHRNHLSGAIPLSLQNGTHFEVLDLRENAFIRDVP-KWIKKSLLALFMMK   79 (190)
Q Consensus         2 L~~L~l~~n~l~~~-~p~~l~~l~~L~~l~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p-~~~~~~~~~l~~~~   79 (190)
                      |+.+|++...++.. +-.-++...+|+.+.+.++++...+-..+..-..|+.++++.+.-..+.. ..+..+++.|..+.
T Consensus       187 lq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~LN  266 (419)
T KOG2120|consen  187 LQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDELN  266 (419)
T ss_pred             hHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhhcC
Confidence            34555555554421 11123345666666666666664444555556677777777655221111 12222233332221


Q ss_pred             CCcc----c----ccCC-CCCCcEEEccCCeec---ccCCccCCCCCCCcEEEcccCc-ceeccCccccCCCCCCEEeCC
Q 039561           80 GKAF----E----YSTN-LNVLRVIELSKNNFL---GEIAKGVTNPGASQTLNLSQNS-FSRTIPESIGSMKSLESIDFS  146 (190)
Q Consensus        80 ~~~~----~----~~~~-~~~L~~L~l~~n~l~---~~~p~~~~~l~~L~~L~l~~n~-l~~~~p~~l~~l~~L~~l~l~  146 (190)
                      -.+-    +    .+.. -+++..|+++++.-.   ..+..-...++.|.+||++.|. ++...-.+|.+.+-|+++.++
T Consensus       267 lsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lSls  346 (419)
T KOG2120|consen  267 LSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHLSLS  346 (419)
T ss_pred             chHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHHhcchheeeehh
Confidence            1110    0    1111 234555555543311   0111112456777788887753 443334456677777877777


Q ss_pred             CCc
Q 039561          147 ANH  149 (190)
Q Consensus       147 ~N~  149 (190)
                      .+.
T Consensus       347 RCY  349 (419)
T KOG2120|consen  347 RCY  349 (419)
T ss_pred             hhc
Confidence            775

>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=96.32  E-value=0.002  Score=29.16  Aligned_cols=21  Identities=33%  Similarity=0.553  Sum_probs=14.1

Q ss_pred             CCcEEEcccCcceeccCccccC
Q 039561          115 ASQTLNLSQNSFSRTIPESIGS  136 (190)
Q Consensus       115 ~L~~L~l~~n~l~~~~p~~l~~  136 (190)
                      +|++|++++|.++ .+|+.|++
T Consensus         1 ~L~~Ldls~n~l~-~ip~~~~~   21 (22)
T PF00560_consen    1 NLEYLDLSGNNLT-SIPSSFSN   21 (22)
T ss_dssp             TESEEEETSSEES-EEGTTTTT
T ss_pred             CccEEECCCCcCE-eCChhhcC
Confidence            3677777777777 66665544

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....

>KOG2982 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.27  E-value=0.00095  Score=50.94  Aligned_cols=97  Identities=25%  Similarity=0.249  Sum_probs=58.9

Q ss_pred             CCCccEEeccCCcccCCCcHHHHHHHHHHHhhcCCcccccCCCCCCcEEEccCCeecccCCccCCCCCCCcEEEcccCcc
Q 039561           47 GTHFEVLDLRENAFIRDVPKWIKKSLLALFMMKGKAFEYSTNLNVLRVIELSKNNFLGEIAKGVTNPGASQTLNLSQNSF  126 (190)
Q Consensus        47 l~~L~~L~l~~n~~~~~~p~~~~~~~~~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l  126 (190)
                      .+.++.+|+.+|.++.. .+ ++.-+.              ++|.++.|+++.|++...+...-.....|+.|-+.+..+
T Consensus        70 ~~~v~elDL~~N~iSdW-se-I~~ile--------------~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L  133 (418)
T KOG2982|consen   70 VTDVKELDLTGNLISDW-SE-IGAILE--------------QLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGL  133 (418)
T ss_pred             hhhhhhhhcccchhccH-HH-HHHHHh--------------cCccceEeeccCCcCCCccccCcccccceEEEEEcCCCC
Confidence            45667777777776531 11 111122              388888899988888744332213456788888877766


Q ss_pred             eec-cCccccCCCCCCEEeCCCCc--eEEeeccccc
Q 039561          127 SRT-IPESIGSMKSLESIDFSANH--YLNLSNNNLT  159 (190)
Q Consensus       127 ~~~-~p~~l~~l~~L~~l~l~~N~--~l~l~~N~l~  159 (190)
                      ... ....+..+|.++.+.++.|.  .+.+++|.+.
T Consensus       134 ~w~~~~s~l~~lP~vtelHmS~N~~rq~n~Dd~c~e  169 (418)
T KOG2982|consen  134 SWTQSTSSLDDLPKVTELHMSDNSLRQLNLDDNCIE  169 (418)
T ss_pred             Chhhhhhhhhcchhhhhhhhccchhhhhcccccccc
Confidence            522 23456677888888888885  4455555544

>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=96.04  E-value=0.005  Score=45.93  Aligned_cols=100  Identities=19%  Similarity=0.171  Sum_probs=61.3

Q ss_pred             cceeccCCccccCCCcccCCCCCCcEEEcccC--cccCcCCccccCCCCccEEeccCCcccCCCcHHHHHHHHHHHhhcC
Q 039561            3 QQGLKIQHKFSRSFPTSTGALSSLESLHLHRN--HLSGAIPLSLQNGTHFEVLDLRENAFIRDVPKWIKKSLLALFMMKG   80 (190)
Q Consensus         3 ~~L~l~~n~l~~~~p~~l~~l~~L~~l~l~~n--~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~~~~~l~~~~~   80 (190)
                      +.+++.+..++.  -..+..+++|+.|.++.|  .+.+.++...-.+++|+++.+++|.+..  +..+.. ++.      
T Consensus        46 e~ls~~n~gltt--~~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~--lstl~p-l~~------  114 (260)
T KOG2739|consen   46 ELLSVINVGLTT--LTNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKD--LSTLRP-LKE------  114 (260)
T ss_pred             hhhhhhccceee--cccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCcccc--ccccch-hhh------
Confidence            344555555543  224667899999999999  6665555444556999999999999753  333322 221      


Q ss_pred             CcccccCCCCCCcEEEccCCeecccC---CccCCCCCCCcEEEc
Q 039561           81 KAFEYSTNLNVLRVIELSKNNFLGEI---AKGVTNPGASQTLNL  121 (190)
Q Consensus        81 ~~~~~~~~~~~L~~L~l~~n~l~~~~---p~~~~~l~~L~~L~l  121 (190)
                              +.+|..|++..|.....-   -..+.-+++|.+|+.
T Consensus       115 --------l~nL~~Ldl~n~~~~~l~dyre~vf~ll~~L~~LD~  150 (260)
T KOG2739|consen  115 --------LENLKSLDLFNCSVTNLDDYREKVFLLLPSLKYLDG  150 (260)
T ss_pred             --------hcchhhhhcccCCccccccHHHHHHHHhhhhccccc
Confidence                    566777777777654210   012233456666654

>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A

Probab=95.63  E-value=0.032  Score=36.97  Aligned_cols=106  Identities=15%  Similarity=0.195  Sum_probs=48.8

Q ss_pred             ccCCCCCCcEEEcccCcccCcCCccccCCCCccEEeccCCcccCCCcHHHHHHHHHHHhhcCCcccccCCCCCCcEEEcc
Q 039561           19 STGALSSLESLHLHRNHLSGAIPLSLQNGTHFEVLDLRENAFIRDVPKWIKKSLLALFMMKGKAFEYSTNLNVLRVIELS   98 (190)
Q Consensus        19 ~l~~l~~L~~l~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~~~~~l~~~~~~~~~~~~~~~~L~~L~l~   98 (190)
                      .+...++|+.+.+.. .+...-...|..++.++.+.+..+ +. .++...                 +..++.++.+.+.
T Consensus         7 ~F~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~-~i~~~~-----------------F~~~~~l~~i~~~   66 (129)
T PF13306_consen    7 AFYNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LT-SIGDNA-----------------FSNCKSLESITFP   66 (129)
T ss_dssp             TTTT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TS-CE-TTT-----------------TTT-TT-EEEEET
T ss_pred             HHhCCCCCCEEEECC-CeeEeChhhccccccccccccccc-cc-ccceee-----------------eeccccccccccc
Confidence            455666788887764 455233455666767888877664 22 222211                 1235567777775


Q ss_pred             CCeecccCCccCCCCCCCcEEEcccCcceeccCccccCCCCCCEEeCCC
Q 039561           99 KNNFLGEIAKGVTNPGASQTLNLSQNSFSRTIPESIGSMKSLESIDFSA  147 (190)
Q Consensus        99 ~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~l~l~~  147 (190)
                      . .+.......+..++.++.+++..+ ++..-...+..+ +|+.+.+..
T Consensus        67 ~-~~~~i~~~~F~~~~~l~~i~~~~~-~~~i~~~~f~~~-~l~~i~~~~  112 (129)
T PF13306_consen   67 N-NLKSIGDNAFSNCTNLKNIDIPSN-ITEIGSSSFSNC-NLKEINIPS  112 (129)
T ss_dssp             S-TT-EE-TTTTTT-TTECEEEETTT--BEEHTTTTTT--T--EEE-TT
T ss_pred             c-cccccccccccccccccccccCcc-ccEEchhhhcCC-CceEEEECC
Confidence            4 332222345666777777777665 443344456665 677666543

>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A

Probab=94.83  E-value=0.1  Score=34.47  Aligned_cols=38  Identities=18%  Similarity=0.255  Sum_probs=16.3

Q ss_pred             ccCCCCCCcEEEcccCcccCcCCccccCCCCccEEeccC
Q 039561           19 STGALSSLESLHLHRNHLSGAIPLSLQNGTHFEVLDLRE   57 (190)
Q Consensus        19 ~l~~l~~L~~l~l~~n~~~~~~~~~~~~l~~L~~L~l~~   57 (190)
                      .+...++++.+.+..+ +...-...|..++.++.+.+..
T Consensus        30 ~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~   67 (129)
T PF13306_consen   30 AFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN   67 (129)
T ss_dssp             TTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS
T ss_pred             hccccccccccccccc-ccccceeeeecccccccccccc
Confidence            4445556666666553 4322223444454566666543

>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D

Probab=94.60  E-value=0.026  Score=23.68  Aligned_cols=13  Identities=38%  Similarity=0.646  Sum_probs=4.6

Q ss_pred             CCcEEEcccCccc
Q 039561           25 SLESLHLHRNHLS   37 (190)
Q Consensus        25 ~L~~l~l~~n~~~   37 (190)
                      +|++|++++|+++
T Consensus         2 ~L~~L~l~~n~L~   14 (17)
T PF13504_consen    2 NLRTLDLSNNRLT   14 (17)
T ss_dssp             T-SEEEETSS--S
T ss_pred             ccCEEECCCCCCC
Confidence            3444444444443

...

>KOG2123 consensus Uncharacterized conserved protein [Function unknown]

Probab=94.01  E-value=0.0014  Score=49.52  Aligned_cols=37  Identities=38%  Similarity=0.488  Sum_probs=19.3

Q ss_pred             CCCCCcEEEcccCcccCcCCccccCCCCccEEeccCCcc
Q 039561           22 ALSSLESLHLHRNHLSGAIPLSLQNGTHFEVLDLRENAF   60 (190)
Q Consensus        22 ~l~~L~~l~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~   60 (190)
                      .++.|++|.++-|.|+..-|  +..++.|+.|+++.|.+
T Consensus        39 kMp~lEVLsLSvNkIssL~p--l~rCtrLkElYLRkN~I   75 (388)
T KOG2123|consen   39 KMPLLEVLSLSVNKISSLAP--LQRCTRLKELYLRKNCI   75 (388)
T ss_pred             hcccceeEEeeccccccchh--HHHHHHHHHHHHHhccc
Confidence            45555555555555553222  34455555555555554

>KOG2123 consensus Uncharacterized conserved protein [Function unknown]

Probab=92.52  E-value=0.012  Score=44.78  Aligned_cols=65  Identities=20%  Similarity=0.139  Sum_probs=52.2

Q ss_pred             CcceeccCCccccCCCcccCCCCCCcEEEcccCcccCcCC--ccccCCCCccEEeccCCcccCCCcHHHH
Q 039561            2 LQQGLKIQHKFSRSFPTSTGALSSLESLHLHRNHLSGAIP--LSLQNGTHFEVLDLRENAFIRDVPKWIK   69 (190)
Q Consensus         2 L~~L~l~~n~l~~~~p~~l~~l~~L~~l~l~~n~~~~~~~--~~~~~l~~L~~L~l~~n~~~~~~p~~~~   69 (190)
                      |++|.|+=|.|+..-  .+...++|+.|+++.|.|. .+.  ..+.++++|+.|-+..|.-.+..+....
T Consensus        43 lEVLsLSvNkIssL~--pl~rCtrLkElYLRkN~I~-sldEL~YLknlpsLr~LWL~ENPCc~~ag~nYR  109 (388)
T KOG2123|consen   43 LEVLSLSVNKISSLA--PLQRCTRLKELYLRKNCIE-SLDELEYLKNLPSLRTLWLDENPCCGEAGQNYR  109 (388)
T ss_pred             ceeEEeeccccccch--hHHHHHHHHHHHHHhcccc-cHHHHHHHhcCchhhhHhhccCCcccccchhHH
Confidence            678899999988633  3678899999999999998 444  3567899999999999987787776543

>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily

Probab=91.92  E-value=0.15  Score=23.69  Aligned_cols=14  Identities=43%  Similarity=0.610  Sum_probs=8.1

Q ss_pred             CCCcEEEcccCccc
Q 039561           24 SSLESLHLHRNHLS   37 (190)
Q Consensus        24 ~~L~~l~l~~n~~~   37 (190)
                      ++|++|++++|.++
T Consensus         2 ~~L~~L~L~~N~l~   15 (26)
T smart00369        2 PNLRELDLSNNQLS   15 (26)
T ss_pred             CCCCEEECCCCcCC
Confidence            45556666666555

>smart00370 LRR Leucine-rich repeats, outliers

Probab=91.92  E-value=0.15  Score=23.69  Aligned_cols=14  Identities=43%  Similarity=0.610  Sum_probs=8.1

Q ss_pred             CCCcEEEcccCccc
Q 039561           24 SSLESLHLHRNHLS   37 (190)
Q Consensus        24 ~~L~~l~l~~n~~~   37 (190)
                      ++|++|++++|.++
T Consensus         2 ~~L~~L~L~~N~l~   15 (26)
T smart00370        2 PNLRELDLSNNQLS   15 (26)
T ss_pred             CCCCEEECCCCcCC
Confidence            45556666666555

>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A

Probab=90.43  E-value=0.1  Score=23.78  Aligned_cols=15  Identities=33%  Similarity=0.534  Sum_probs=7.3

Q ss_pred             CCccEEeccCCcccC
Q 039561           48 THFEVLDLRENAFIR   62 (190)
Q Consensus        48 ~~L~~L~l~~n~~~~   62 (190)
                      ++|+.|++++|.+..
T Consensus         2 ~~L~~L~l~~n~i~~   16 (24)
T PF13516_consen    2 PNLETLDLSNNQITD   16 (24)
T ss_dssp             TT-SEEE-TSSBEHH
T ss_pred             CCCCEEEccCCcCCH
Confidence            455666666666544

...

>KOG0473 consensus Leucine-rich repeat protein [Function unknown]

Probab=89.28  E-value=0.0098  Score=44.04  Aligned_cols=87  Identities=20%  Similarity=0.172  Sum_probs=47.0

Q ss_pred             cCCCCCCcEEEcccCcccCcCCccccCCCCccEEeccCCcccCCCcHHHHHHHHHHHhhcCCcccccCCCCCCcEEEccC
Q 039561           20 TGALSSLESLHLHRNHLSGAIPLSLQNGTHFEVLDLRENAFIRDVPKWIKKSLLALFMMKGKAFEYSTNLNVLRVIELSK   99 (190)
Q Consensus        20 l~~l~~L~~l~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~~~~~l~~~~~~~~~~~~~~~~L~~L~l~~   99 (190)
                      +..+...+.+|++.|+.. .....|.-++.+..+|++.|++ ...|..+.+                  ...+..+++..
T Consensus        38 i~~~kr~tvld~~s~r~v-n~~~n~s~~t~~~rl~~sknq~-~~~~~d~~q------------------~~e~~~~~~~~   97 (326)
T KOG0473|consen   38 IASFKRVTVLDLSSNRLV-NLGKNFSILTRLVRLDLSKNQI-KFLPKDAKQ------------------QRETVNAASHK   97 (326)
T ss_pred             hhccceeeeehhhhhHHH-hhccchHHHHHHHHHhccHhhH-hhChhhHHH------------------HHHHHHHHhhc
Confidence            445566666777777665 4555555556666666666663 234544443                  33344444444


Q ss_pred             CeecccCCccCCCCCCCcEEEcccCcce
Q 039561          100 NNFLGEIAKGVTNPGASQTLNLSQNSFS  127 (190)
Q Consensus       100 n~l~~~~p~~~~~l~~L~~L~l~~n~l~  127 (190)
                      |..+ ..|..++..+.++.++.-.|.++
T Consensus        98 n~~~-~~p~s~~k~~~~k~~e~k~~~~~  124 (326)
T KOG0473|consen   98 NNHS-QQPKSQKKEPHPKKNEQKKTEFF  124 (326)
T ss_pred             cchh-hCCccccccCCcchhhhccCcch
Confidence            5444 45555555555555555555443

>KOG0473 consensus Leucine-rich repeat protein [Function unknown]

Probab=84.78  E-value=0.022  Score=42.26  Aligned_cols=85  Identities=20%  Similarity=0.209  Sum_probs=63.9

Q ss_pred             ccCCCCccEEeccCCcccCCCcHHHHHHHHHHHhhcCCcccccCCCCCCcEEEccCCeecccCCccCCCCCCCcEEEccc
Q 039561           44 LQNGTHFEVLDLRENAFIRDVPKWIKKSLLALFMMKGKAFEYSTNLNVLRVIELSKNNFLGEIAKGVTNPGASQTLNLSQ  123 (190)
Q Consensus        44 ~~~l~~L~~L~l~~n~~~~~~p~~~~~~~~~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~  123 (190)
                      +..+...+.||++.|++- .....+..                  +..+..++++.|.+. .+|..++....+..+++..
T Consensus        38 i~~~kr~tvld~~s~r~v-n~~~n~s~------------------~t~~~rl~~sknq~~-~~~~d~~q~~e~~~~~~~~   97 (326)
T KOG0473|consen   38 IASFKRVTVLDLSSNRLV-NLGKNFSI------------------LTRLVRLDLSKNQIK-FLPKDAKQQRETVNAASHK   97 (326)
T ss_pred             hhccceeeeehhhhhHHH-hhccchHH------------------HHHHHHHhccHhhHh-hChhhHHHHHHHHHHHhhc
Confidence            334567788888888843 33344433                  455777889999987 7888898888899999988


Q ss_pred             CcceeccCccccCCCCCCEEeCCCCc
Q 039561          124 NSFSRTIPESIGSMKSLESIDFSANH  149 (190)
Q Consensus       124 n~l~~~~p~~l~~l~~L~~l~l~~N~  149 (190)
                      |..+ ..|.+++..+.++.++...|.
T Consensus        98 n~~~-~~p~s~~k~~~~k~~e~k~~~  122 (326)
T KOG0473|consen   98 NNHS-QQPKSQKKEPHPKKNEQKKTE  122 (326)
T ss_pred             cchh-hCCccccccCCcchhhhccCc
Confidence            8887 788889999999877766655

>KOG3864 consensus Uncharacterized conserved protein [Function unknown]

Probab=83.43  E-value=0.15  Score=36.92  Aligned_cols=14  Identities=14%  Similarity=0.401  Sum_probs=7.4

Q ss_pred             CccEEeccCCcccC
Q 039561           49 HFEVLDLRENAFIR   62 (190)
Q Consensus        49 ~L~~L~l~~n~~~~   62 (190)
                      .++.+|.++..+..
T Consensus       102 ~IeaVDAsds~I~~  115 (221)
T KOG3864|consen  102 KIEAVDASDSSIMY  115 (221)
T ss_pred             eEEEEecCCchHHH
Confidence            45555666555443

>smart00364 LRR_BAC Leucine-rich repeats, bacterial type

Probab=83.38  E-value=0.75  Score=21.59  Aligned_cols=17  Identities=35%  Similarity=0.704  Sum_probs=10.2

Q ss_pred             CCcEEEcccCcceeccCc
Q 039561          115 ASQTLNLSQNSFSRTIPE  132 (190)
Q Consensus       115 ~L~~L~l~~n~l~~~~p~  132 (190)
                      .|+.|++++|.++ .+|+
T Consensus         3 ~L~~L~vs~N~Lt-~LPe   19 (26)
T smart00364        3 SLKELNVSNNQLT-SLPE   19 (26)
T ss_pred             ccceeecCCCccc-cCcc
Confidence            4566666666665 5554

>KOG4308 consensus LRR-containing protein [Function unknown]

Probab=82.54  E-value=0.015  Score=47.81  Aligned_cols=60  Identities=22%  Similarity=0.219  Sum_probs=31.5

Q ss_pred             CcceeccCCccccC----CCcccCCC-CCCcEEEcccCcccCc----CCccccCCCCccEEeccCCccc
Q 039561            2 LQQGLKIQHKFSRS----FPTSTGAL-SSLESLHLHRNHLSGA----IPLSLQNGTHFEVLDLRENAFI   61 (190)
Q Consensus         2 L~~L~l~~n~l~~~----~p~~l~~l-~~L~~l~l~~n~~~~~----~~~~~~~l~~L~~L~l~~n~~~   61 (190)
                      |+.|++++|.+...    +...+... +.+++|++..+.++..    +.+.+.....++.++++.|.+.
T Consensus       117 L~~L~l~~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g~~~l~~~L~~~~~l~~l~l~~n~l~  185 (478)
T KOG4308|consen  117 LGQLDLSGNNLGDEGARLLCEGLRLPQCLLQTLELVSCSLTSEGAAPLAAVLEKNEHLTELDLSLNGLI  185 (478)
T ss_pred             HhHhhcccCCCccHhHHHHHhhcccchHHHHHHHhhcccccccchHHHHHHHhcccchhHHHHHhcccc
Confidence            45667777766632    11122222 4556666666666522    2233334556666677766653

>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type

Probab=81.63  E-value=1.1  Score=21.28  Aligned_cols=15  Identities=27%  Similarity=0.321  Sum_probs=9.7

Q ss_pred             CCccEEeccCCcccC
Q 039561           48 THFEVLDLRENAFIR   62 (190)
Q Consensus        48 ~~L~~L~l~~n~~~~   62 (190)
                      ++|++|++++|.+..
T Consensus         2 ~~L~~LdL~~N~i~~   16 (28)
T smart00368        2 PSLRELDLSNNKLGD   16 (28)
T ss_pred             CccCEEECCCCCCCH
Confidence            356777777777643

>KOG3864 consensus Uncharacterized conserved protein [Function unknown]

Probab=81.08  E-value=0.21  Score=36.23  Aligned_cols=68  Identities=15%  Similarity=-0.016  Sum_probs=40.4

Q ss_pred             cceeccCCccccCCCcccCCCCCCcEEEcccCcccCcCC-ccc-cCCCCccEEeccCCc-ccCCCcHHHHH
Q 039561            3 QQGLKIQHKFSRSFPTSTGALSSLESLHLHRNHLSGAIP-LSL-QNGTHFEVLDLRENA-FIRDVPKWIKK   70 (190)
Q Consensus         3 ~~L~l~~n~l~~~~p~~l~~l~~L~~l~l~~n~~~~~~~-~~~-~~l~~L~~L~l~~n~-~~~~~p~~~~~   70 (190)
                      +.++.++..|..+--+.+.+++.++.+.+.++.--+.+. +.+ ...++|+.|++++|. ++...-.++..
T Consensus       104 eaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~  174 (221)
T KOG3864|consen  104 EAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLK  174 (221)
T ss_pred             EEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHH
Confidence            445666666665444566778888888887776432221 111 135789999999875 44333344443

>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily

Probab=80.91  E-value=1.5  Score=20.58  Aligned_cols=14  Identities=36%  Similarity=0.648  Sum_probs=10.1

Q ss_pred             CCCcEEEcccCccc
Q 039561           24 SSLESLHLHRNHLS   37 (190)
Q Consensus        24 ~~L~~l~l~~n~~~   37 (190)
                      ++|+.|+++.|+|+
T Consensus         2 ~~L~~L~L~~NkI~   15 (26)
T smart00365        2 TNLEELDLSQNKIK   15 (26)
T ss_pred             CccCEEECCCCccc
Confidence            56777777777776

>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]

Probab=80.70  E-value=0.5  Score=38.49  Aligned_cols=35  Identities=20%  Similarity=0.122  Sum_probs=16.7

Q ss_pred             CCCCcEEEcccCcccCc--CCccccCCCCccEEeccC
Q 039561           23 LSSLESLHLHRNHLSGA--IPLSLQNGTHFEVLDLRE   57 (190)
Q Consensus        23 l~~L~~l~l~~n~~~~~--~~~~~~~l~~L~~L~l~~   57 (190)
                      .+.|+.+.+..+.-...  +-......+.|+.|++++
T Consensus       187 ~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~  223 (482)
T KOG1947|consen  187 CPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSG  223 (482)
T ss_pred             CchhhHhhhcccccCChhhHHHHHhhCchhheecccC
Confidence            45555555555432212  112233456666666665

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	190
1ogq_A	313	The Crystal Structure Of Pgip (Polygalacturonase In		2e-11
3rgx_A	768	Structural Insight Into Brassinosteroid Perception		4e-10
3riz_A	772	Crystal Structure Of The Plant Steroid Receptor Bri		4e-10

>pdb|1OGQ|A Chain A, The Crystal Structure Of Pgip (Polygalacturonase Inhibiting Protein), A Leucine Rich Repeat Protein Involved In Plant Defense Length = 313

Iteration: 1
 Score = 65.5 bits (158), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 59/186 (31%), Positives = 89/186 (47%), Gaps = 38/186 (20%)
Query: 10  HKFSRSFPTSTGALSSL-ESLHLHRNHLSGAIPLSLQNGTHFEVLDLRENAFIRDVPKWI 68
           ++ S + P S G+ S L  S+ + RN L+G IP +  N  +   +DL  N          
Sbjct: 159 NRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFAN-LNLAFVDLSRN---------- 207
Query: 69  KKSLLALFMMKGKA-FEYSTNLNVLRVIELSKNNFLGEIAKGVTNPGASQTLN---LSQN 124
                   M++G A   + ++ N  + I L+KN+   ++ K     G S+ LN   L  N
Sbjct: 208 --------MLEGDASVLFGSDKNTQK-IHLAKNSLAFDLGKV----GLSKNLNGLDLRNN 254
Query: 125 SFSRTIPESIGSMKSLESIDFSANHYLNLSNNNLTGEIPSGIQLQGFHQSRFAGSE-LCG 183
               T+P+ +  +K L        H LN+S NNL GEIP G  LQ F  S +A ++ LCG
Sbjct: 255 RIYGTLPQGLTQLKFL--------HSLNVSFNNLCGEIPQGGNLQRFDVSAYANNKCLCG 306
Query: 184 APFPKC 189
           +P P C
Sbjct: 307 SPLPAC 312

>pdb|3RGX|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1 Length = 768

Iteration: 1
 Score = 60.8 bits (146), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 64/250 (25%), Positives = 94/250 (37%), Gaps = 69/250 (27%)
Query: 9   QHKFSRSFPTSTGALSSLESLHLHRNHLSGAIPLSLQNGTHFEVLDLRENAFIRDVPKWI 68
            ++ +   P   G L +L  L L  N  SG IP  L +      LDL  N F   +P  +
Sbjct: 499 NNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAM 558
Query: 69  KK--SLLALFMMKGKAFEYSTN-----------------------LNVL----------R 93
            K    +A   + GK + Y  N                       LN L          R
Sbjct: 559 FKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSR 618
Query: 94  V-----------------IELSKNNFLGEIAKGVTNPGASQTLNLSQNSFSRTIPESIGS 136
           V                 +++S N   G I K + +      LNL  N  S +IP+ +G 
Sbjct: 619 VYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGD 678
Query: 137 MKSLESIDFSANHY----------------LNLSNNNLTGEIPSGIQLQGFHQSRFAGSE 180
           ++ L  +D S+N                  ++LSNNNL+G IP   Q + F  ++F  + 
Sbjct: 679 LRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPEMGQFETFPPAKFLNNP 738
Query: 181 -LCGAPFPKC 189
            LCG P P+C
Sbjct: 739 GLCGYPLPRC 748

>pdb|3RIZ|A Chain A, Crystal Structure Of The Plant Steroid Receptor Bri1 Ectodomain Length = 772

Iteration: 1
 Score = 60.8 bits (146), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 64/250 (25%), Positives = 94/250 (37%), Gaps = 69/250 (27%)
Query: 9   QHKFSRSFPTSTGALSSLESLHLHRNHLSGAIPLSLQNGTHFEVLDLRENAFIRDVPKWI 68
            ++ +   P   G L +L  L L  N  SG IP  L +      LDL  N F   +P  +
Sbjct: 496 NNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAM 555
Query: 69  KK--SLLALFMMKGKAFEYSTN-----------------------LNVL----------R 93
            K    +A   + GK + Y  N                       LN L          R
Sbjct: 556 FKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSR 615
Query: 94  V-----------------IELSKNNFLGEIAKGVTNPGASQTLNLSQNSFSRTIPESIGS 136
           V                 +++S N   G I K + +      LNL  N  S +IP+ +G 
Sbjct: 616 VYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGD 675
Query: 137 MKSLESIDFSANHY----------------LNLSNNNLTGEIPSGIQLQGFHQSRFAGSE 180
           ++ L  +D S+N                  ++LSNNNL+G IP   Q + F  ++F  + 
Sbjct: 676 LRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPEMGQFETFPPAKFLNNP 735
Query: 181 -LCGAPFPKC 189
            LCG P P+C
Sbjct: 736 GLCGYPLPRC 745

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	190
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	6e-31
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	6e-27
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	2e-23
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	1e-22
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	2e-21
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	3e-19
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	1e-18
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	1e-18
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	2e-18
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	2e-12
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	1e-07
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	1e-28
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	1e-23
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	2e-21
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	2e-09
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	1e-07
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	2e-18
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	7e-14
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	1e-13
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	4e-13
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	4e-13
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	1e-11
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	8e-10
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	2e-06
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	2e-04
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	4e-15
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	2e-14
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	3e-13
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	5e-13
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	1e-12
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	7e-12
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	1e-09
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	4e-08
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	2e-07
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	2e-05
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	1e-13
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	2e-13
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	2e-13
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	3e-13
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	2e-12
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	4e-12
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	6e-12
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	1e-11
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	2e-09
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	4e-13
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	7e-13
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	8e-12
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	8e-12
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	1e-09
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	2e-09
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	3e-04
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	1e-12
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	9e-11
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	5e-10
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	6e-10
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	2e-09
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	4e-09
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	2e-08
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	2e-08
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	3e-08
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	3e-08
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	2e-12
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	1e-10
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	2e-07
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	5e-07
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	9e-11
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	1e-09
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	2e-09
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	1e-08
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	2e-08
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	5e-08
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	9e-07
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	4e-06
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	8e-06
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	2e-10
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	4e-10
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	7e-10
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	2e-08
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	2e-09
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	3e-08
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	3e-08
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	6e-07
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	6e-05
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	2e-08
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	4e-08
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	6e-07
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	8e-06
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	3e-05
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	2e-04
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	2e-08
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	1e-06
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	3e-05
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	3e-05
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	2e-08
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	4e-07
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	4e-07
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	1e-06
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	5e-06
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	3e-08
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	3e-06
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	3e-08
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	7e-07
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	8e-07
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	2e-06
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	4e-08
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	1e-06
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	2e-06
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	2e-06
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	9e-06
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	4e-08
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	7e-07
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	5e-06
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	7e-06
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	6e-04
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	5e-08
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	2e-05
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	7e-04
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	8e-08
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	3e-06
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	5e-06
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	2e-05
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	8e-08
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	9e-07
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	2e-05
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	1e-07
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	1e-05
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	2e-05
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	2e-07
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	5e-07
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	5e-07
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	4e-06
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	3e-05
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	1e-04
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	2e-04
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	2e-07
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	6e-07
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	8e-06
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	3e-07
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	6e-07
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	5e-05
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	4e-07
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	2e-06
1o6v_A	466	Internalin A; bacterial infection, extracellular r	1e-06
1o6v_A	466	Internalin A; bacterial infection, extracellular r	3e-06
1o6v_A	466	Internalin A; bacterial infection, extracellular r	5e-05
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	2e-06
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	3e-05
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	4e-05
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	4e-04
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	4e-06
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	5e-04
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	5e-06
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	1e-05
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	4e-04
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	1e-05
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	2e-05
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	3e-05
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	5e-04
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	5e-05
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	8e-05
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	1e-04
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	9e-05
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	1e-04
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	9e-04
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	2e-04
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	3e-04

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  117 bits (295), Expect = 6e-31
 Identities = 40/198 (20%), Positives = 66/198 (33%), Gaps = 37/198 (18%)

Query: 11  KFSRSFPTSTGALSSLESLHLHRN--HLSGAIPLSLQNGTHFEVLDLRENAFIRDVPKWI 68
             +             +  H   N     G     L   +     ++    +        
Sbjct: 569 FIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTF 628

Query: 69  KKSLLALFMMKGKAFEYSTNLNVLRVIELSKNNFLGEIAKGVTNPGASQTLNLSQNSFSR 128
                              N   +  +++S N   G I K + +      LNL  N  S 
Sbjct: 629 D------------------NNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISG 670

Query: 129 TIPESIGSMKSLESIDFSANH----------------YLNLSNNNLTGEIPSGIQLQGFH 172
           +IP+ +G ++ L  +D S+N                  ++LSNNNL+G IP   Q + F 
Sbjct: 671 SIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPEMGQFETFP 730

Query: 173 QSRFAG-SELCGAPFPKC 189
            ++F     LCG P P+C
Sbjct: 731 PAKFLNNPGLCGYPLPRC 748

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  105 bits (265), Expect = 6e-27
 Identities = 39/176 (22%), Positives = 66/176 (37%), Gaps = 20/176 (11%)

Query: 11  KFSRSFPTSTGALSSLESLHLHRNHLSGAIPLSLQNGTHFEVLDLRENAFIRDVPKWIKK 70
           + +   P   G L +L  L L  N  SG IP  L +      LDL  N F   +P  + K
Sbjct: 501 RLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFK 560

Query: 71  --SLLALFMMKGKAFEYSTNLNVLRVIELSKN--NFLGEIAKGVTNPGASQTLNLSQNSF 126
               +A   + GK + Y  N  + +    + N   F G  ++ +         N++   +
Sbjct: 561 QSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVY 620

Query: 127 SRTIPESIGSMKSLESIDFSANH----------------YLNLSNNNLTGEIPSGI 166
                 +  +  S+  +D S N                  LNL +N+++G IP  +
Sbjct: 621 GGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEV 676

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 95.4 bits (238), Expect = 2e-23
 Identities = 52/183 (28%), Positives = 76/183 (41%), Gaps = 27/183 (14%)

Query: 11  KFSRSFPTS-TGALSSLESLHLHRNHLSGAIPLSLQNGTHFEVLDLRENAFIRDVPKWIK 69
           KF+   P   +GA  +L  L L  NH  GA+P    + +  E L L  N F  ++P    
Sbjct: 280 KFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTL 339

Query: 70  KSLLALFMMK-------GKAFEYSTNLNV-LRVIELSKNNFLGEIAKGVTNPGAS--QTL 119
             +  L ++        G+  E  TNL+  L  ++LS NNF G I   +     +  Q L
Sbjct: 340 LKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQEL 399

Query: 120 NLSQNSFSRTIPESIGSMKSLESIDFSANH----------------YLNLSNNNLTGEIP 163
            L  N F+  IP ++ +   L S+  S N+                 L L  N L GEIP
Sbjct: 400 YLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIP 459

Query: 164 SGI 166
             +
Sbjct: 460 QEL 462

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 93.4 bits (233), Expect = 1e-22
 Identities = 41/174 (23%), Positives = 66/174 (37%), Gaps = 36/174 (20%)

Query: 11  KFSRSFPTSTG--ALSSLESLHLHRNHLSGAIPLSLQNGTHFEVLDLRENAFIRDVPKWI 68
            FS     +      ++L+ L+L  N  +G IP +L N +    L L  N     +P  +
Sbjct: 379 NFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSL 438

Query: 69  KKSLLALFMMKGKAFEYSTNLNVLRVIELSKNNFLGEIAKGVTNPGASQTLNLSQNSFSR 128
                              +L+ LR ++L  N   GEI + +      +TL L  N  + 
Sbjct: 439 ------------------GSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTG 480

Query: 129 TIPESIGSMKSLESIDFSANH----------------YLNLSNNNLTGEIPSGI 166
            IP  + +  +L  I  S N                  L LSNN+ +G IP+ +
Sbjct: 481 EIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAEL 534

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 89.6 bits (223), Expect = 2e-21
 Identities = 41/164 (25%), Positives = 68/164 (41%), Gaps = 38/164 (23%)

Query: 21  GALSSLESLHLHRNHLSGAIPLSLQNGTHFEVLDLRENAFIRDVPKWIKKSLLALFMMKG 80
           G  S+L+ L +  N LSG    ++   T  ++L++  N F+  +P               
Sbjct: 220 GDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPL------------- 266

Query: 81  KAFEYSTNLNVLRVIELSKNNFLGEIAKGVTNPGAS-QTLNLSQNSFSRTIPESIGSMKS 139
                   L  L+ + L++N F GEI   ++    +   L+LS N F   +P   GS   
Sbjct: 267 -------PLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSL 319

Query: 140 LESIDFSANH-----------------YLNLSNNNLTGEIPSGI 166
           LES+  S+N+                  L+LS N  +GE+P  +
Sbjct: 320 LESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESL 363

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 83.8 bits (208), Expect = 3e-19
 Identities = 37/170 (21%), Positives = 62/170 (36%), Gaps = 32/170 (18%)

Query: 11  KFSRSFPTSTGALSSLESLHLHRNHLSGAIPLSLQNGTHFEVLDLRENAFIRDVPKWIKK 70
                 P     + +LE+L L  N L+G IP  L N T+   + L  N    ++PKWI  
Sbjct: 453 MLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIG- 511

Query: 71  SLLALFMMKGKAFEYSTNLNVLRVIELSKNNFLGEIAKGVTNPGASQTLNLSQNSFSRTI 130
                             L  L +++LS N+F G I   + +  +   L+L+ N F+ TI
Sbjct: 512 -----------------RLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTI 554

Query: 131 PESIGSMKSLESIDFSANH--------------YLNLSNNNLTGEIPSGI 166
           P ++       + +F A                +   +     G     +
Sbjct: 555 PAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQL 604

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 81.9 bits (203), Expect = 1e-18
 Identities = 40/184 (21%), Positives = 69/184 (37%), Gaps = 30/184 (16%)

Query: 10  HKFSRSFPTSTGALSSLESLHLHRNHLSGAIPLSLQNGTHFEVLDLRENAFIRDVPKWIK 69
           +    +  +S  +L+ LESL L  +H++G++    +       LDL  N+    V     
Sbjct: 63  NVGFSAVSSSLLSLTGLESLFLSNSHINGSVS-GFKCSASLTSLDLSRNSLSGPVTTLTS 121

Query: 70  ----KSLLAL-----FMMKGKAFEYSTNLNVLRVIELSKNNFLGEIAKGVTNPGAS---Q 117
                 L  L      +           LN L V++LS N+  G    G          +
Sbjct: 122 LGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISGANVVGWVLSDGCGELK 181

Query: 118 TLNLSQNSFSRTIPESIGSMKSLESIDFSANH---------------YLNLSNNNLTGEI 162
            L +S N  S  +   +    +LE +D S+N+               +L++S N L+G+ 
Sbjct: 182 HLAISGNKISGDVD--VSRCVNLEFLDVSSNNFSTGIPFLGDCSALQHLDISGNKLSGDF 239

Query: 163 PSGI 166
              I
Sbjct: 240 SRAI 243

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 81.9 bits (203), Expect = 1e-18
 Identities = 41/174 (23%), Positives = 63/174 (36%), Gaps = 37/174 (21%)

Query: 12  FSRSFPTST--GALSSLESLHLHRNHLSGAIPLS-LQNGTHFEVLDLRENAFIRDVPKWI 68
            S    T T  G+ S L+ L++  N L     +S        EVLDL  N+         
Sbjct: 112 LSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISGANVVGW 171

Query: 69  KKSLLALFMMKGKAFEYSTNLNVLRVIELSKNNFLGEIAKGVTNPGASQTLNLSQNSFSR 128
                            S     L+ + +S N   G++   V+     + L++S N+FS 
Sbjct: 172 ---------------VLSDGCGELKHLAISGNKISGDV--DVSRCVNLEFLDVSSNNFST 214

Query: 129 TIPESIGSMKSLESIDFSANH----------------YLNLSNNNLTGEIPSGI 166
            IP  +G   +L+ +D S N                  LN+S+N   G IP   
Sbjct: 215 GIP-FLGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPLP 267

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 81.1 bits (201), Expect = 2e-18
 Identities = 41/174 (23%), Positives = 63/174 (36%), Gaps = 39/174 (22%)

Query: 11  KFSRSFPTSTGA-LSSLESLHLHRNHLSGAIPLSLQ---NGTHFEVLDLRENAFIRDVPK 66
                   S G  L+SLE L L  N +SGA  +           + L +  N    DV  
Sbjct: 137 TLDFPGKVSGGLKLNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKISGDVD- 195

Query: 67  WIKKSLLALFMMKGKAFEYSTNLNVLRVIELSKNNFLGEIAKGVTNPGASQTLNLSQNSF 126
                               +    L  +++S NNF   I   + +  A Q L++S N  
Sbjct: 196 -------------------VSRCVNLEFLDVSSNNFSTGIP-FLGDCSALQHLDISGNKL 235

Query: 127 SRTIPESIGSMKSLESIDFSANH--------------YLNLSNNNLTGEIPSGI 166
           S     +I +   L+ ++ S+N               YL+L+ N  TGEIP  +
Sbjct: 236 SGDFSRAISTCTELKLLNISSNQFVGPIPPLPLKSLQYLSLAENKFTGEIPDFL 289

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 63.8 bits (156), Expect = 2e-12
 Identities = 33/153 (21%), Positives = 54/153 (35%), Gaps = 33/153 (21%)

Query: 24  SSLESLHLHRNHLS---GAIPLSLQNGTHFEVLDLRENAFIRDVPKWIKKSLLALFMMKG 80
             + S+ L    L+    A+  SL + T  E L L  +     V  +             
Sbjct: 50  DKVTSIDLSSKPLNVGFSAVSSSLLSLTGLESLFLSNSHINGSVSGFK------------ 97

Query: 81  KAFEYSTNLNVLRVIELSKNNFLGEIAKGVTNPGAS--QTLNLSQNSFSRTIPESIG-SM 137
                      L  ++LS+N+  G +    +    S  + LN+S N+       S G  +
Sbjct: 98  -------CSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKL 150

Query: 138 KSLESIDFSANHYLNLSNNNLTGEIPSGIQLQG 170
            SLE         L+LS N+++G    G  L  
Sbjct: 151 NSLE--------VLDLSANSISGANVVGWVLSD 175

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 49.9 bits (120), Expect = 1e-07
 Identities = 13/83 (15%), Positives = 31/83 (37%), Gaps = 9/83 (10%)

Query: 86  STNLNVLRVIELSKNNFLGEIAKGVTNPGASQTLNLSQNSFSRTIPESIGSMKSLESIDF 145
              +  + +     N     ++  + +    ++L LS +  + ++        SL     
Sbjct: 49  DDKVTSIDLSSKPLNVGFSAVSSSLLSLTGLESLFLSNSHINGSVSG-FKCSASLT---- 103

Query: 146 SANHYLNLSNNNLTGEIPSGIQL 168
                L+LS N+L+G + +   L
Sbjct: 104 ----SLDLSRNSLSGPVTTLTSL 122

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score =  107 bits (270), Expect = 1e-28
 Identities = 53/181 (29%), Positives = 76/181 (41%), Gaps = 30/181 (16%)

Query: 11  KFSRSFPTSTGALSSL-ESLHLHRNHLSGAIPLSLQNGTHFEVLDLRENAFIRDVPKWIK 69
           + S + P S G+ S L  S+ + RN L+G IP +  N  +   +DL  N    D      
Sbjct: 160 RISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFAN-LNLAFVDLSRNMLEGDASVLF- 217

Query: 70  KSLLALFMMKGKAFEYSTNLNVLRVIELSKNNFLGEIAKGVTNPGASQTLNLSQNSFSRT 129
                             +    + I L+KN+   ++ K V        L+L  N    T
Sbjct: 218 -----------------GSDKNTQKIHLAKNSLAFDLGK-VGLSKNLNGLDLRNNRIYGT 259

Query: 130 IPESIGSMKSLESIDFSANHYLNLSNNNLTGEIPSGIQLQGFHQSRFAG-SELCGAPFPK 188
           +P+ +  +K L          LN+S NNL GEIP G  LQ F  S +A    LCG+P P 
Sbjct: 260 LPQGLTQLKFLH--------SLNVSFNNLCGEIPQGGNLQRFDVSAYANNKCLCGSPLPA 311

Query: 189 C 189
           C
Sbjct: 312 C 312

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score = 94.1 bits (235), Expect = 1e-23
 Identities = 33/171 (19%), Positives = 59/171 (34%), Gaps = 36/171 (21%)

Query: 11  KFSRSFPTSTGALSSLESLHLHRNHLSGAIPLSLQNGTHFEVLDLRENAFIRDVPKWIKK 70
                 P +   L+ L  L++   ++SGAIP  L        LD   NA    +P  I  
Sbjct: 88  NLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSI-- 145

Query: 71  SLLALFMMKGKAFEYSTNLNVLRVIELSKNNFLGEIAKGVTN-PGASQTLNLSQNSFSRT 129
                           ++L  L  I    N   G I     +      ++ +S+N  +  
Sbjct: 146 ----------------SSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGK 189

Query: 130 IPESIGSMKSLESIDFSANH----------------YLNLSNNNLTGEIPS 164
           IP +  ++ +L  +D S N                  ++L+ N+L  ++  
Sbjct: 190 IPPTFANL-NLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGK 239

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score = 88.0 bits (219), Expect = 2e-21
 Identities = 32/155 (20%), Positives = 56/155 (36%), Gaps = 26/155 (16%)

Query: 13  SRSFPTSTGALSSLESLHLH-RNHLSGAIPLSLQNGTHFEVLDLRENAFIRDVPKWIKKS 71
               P+S   L  L  L++   N+L G IP ++   T    L +        +P ++   
Sbjct: 65  PYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFL--- 121

Query: 72  LLALFMMKGKAFEYSTNLNVLRVIELSKNNFLGEIAKGVTNPGASQTLNLSQNSFSRTIP 131
                          + +  L  ++ S N   G +   +++      +    N  S  IP
Sbjct: 122 ---------------SQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIP 166

Query: 132 ESIGSMKSLESIDFSANHYLNLSNNNLTGEIPSGI 166
           +S GS   L +        + +S N LTG+IP   
Sbjct: 167 DSYGSFSKLFT-------SMTISRNRLTGKIPPTF 194

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score = 54.8 bits (133), Expect = 2e-09
 Identities = 19/99 (19%), Positives = 33/99 (33%), Gaps = 19/99 (19%)

Query: 87  TNLNVLRVIELSKNNFLGE--IAKGVTNPGASQTLNLS-QNSFSRTIPESIGSMKSLESI 143
           T    +  ++LS  N      I   + N      L +   N+    IP +I  +  L  +
Sbjct: 47  TQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYL 106

Query: 144 DFSANH----------------YLNLSNNNLTGEIPSGI 166
             +  +                 L+ S N L+G +P  I
Sbjct: 107 YITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSI 145

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score = 49.5 bits (119), Expect = 1e-07
 Identities = 17/89 (19%), Positives = 31/89 (34%), Gaps = 19/89 (21%)

Query: 97  LSKNNFLGEIAKGVTNPGASQTLNLSQNSFS--RTIPESIGSMKSLESIDFSAN------ 148
                +LG +    T       L+LS  +      IP S+ ++  L  +           
Sbjct: 33  CCNRTWLGVLCDTDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGP 92

Query: 149 -----------HYLNLSNNNLTGEIPSGI 166
                      HYL +++ N++G IP  +
Sbjct: 93  IPPAIAKLTQLHYLYITHTNVSGAIPDFL 121

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 81.2 bits (201), Expect = 2e-18
 Identities = 31/161 (19%), Positives = 55/161 (34%), Gaps = 17/161 (10%)

Query: 8   IQHKFSRSFPTSTGALSSLESLHLHRNHLSGAIPLSLQNGTHFEVLDLRENAFIRDVPKW 67
           +  K       +     ++ S++L  N +S         G+    ++L  N  + ++PK 
Sbjct: 417 VDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNM-LTEIPKN 475

Query: 68  IKKSLLALFMMKGKAFEYSTNLNVLRVIELSKNNFLGEIAKGVTNPGAS--QTLNLSQNS 125
             K     F           N  +L  I+L   N L +++             ++LS NS
Sbjct: 476 SLKDENENF----------KNTYLLTSIDLR-FNKLTKLSDDFRATTLPYLVGIDLSYNS 524

Query: 126 FSRTIPESIGSMKSLESIDFSANHYLNLSNNNLTGEIPSGI 166
           FS   P    +  +L+          +   N    E P GI
Sbjct: 525 FS-KFPTQPLNSSTLKGFGIRNQ--RDAQGNRTLREWPEGI 562

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 68.1 bits (167), Expect = 7e-14
 Identities = 31/182 (17%), Positives = 52/182 (28%), Gaps = 44/182 (24%)

Query: 11  KFSRSFPTSTGALSSLESLHLHRNHLSG-------AIPLSLQNGTHFEVLDLRENAFIRD 63
           + S+         S L S++L  N L+            + +N      +DLR N  +  
Sbjct: 444 QISKFPKELFSTGSPLSSINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFN-KLTK 502

Query: 64  VPKWIKKSLLALFMMKGKAFEYSTNLNVLRVIELSKNNFLGEIAKGVTNP------GASQ 117
           +    + +                 L  L  I+LS  N   +      N       G   
Sbjct: 503 LSDDFRAT----------------TLPYLVGIDLS-YNSFSKFPTQPLNSSTLKGFGIRN 545

Query: 118 TLNLSQNSFSRTIPESIGSMKSLESIDFSANH-------------YLNLSNNNLTGEIPS 164
             +   N   R  PE I    SL  +   +N               L++ +N       S
Sbjct: 546 QRDAQGNRTLREWPEGITLCPSLTQLQIGSNDIRKVNEKITPNISVLDIKDNPNISIDLS 605

Query: 165 GI 166
            +
Sbjct: 606 YV 607

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 67.4 bits (165), Expect = 1e-13
 Identities = 22/180 (12%), Positives = 52/180 (28%), Gaps = 29/180 (16%)

Query: 11  KFSRSFPTSTGALSSLESLHLHRNHLSGAIPLSLQNGTHFEVLDLRENAFIRDVPKWIKK 70
           +  ++       L  L  + ++       +P  L+     +++++  N  I         
Sbjct: 236 QQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGIS-------- 287

Query: 71  SLLALFMMKGKAFEYSTNLNVLRVIELSKNNFL-GEIAKGVTNPGASQTLNLSQNSFSRT 129
                     +A   +     +++I +  NN     +   +        L    N     
Sbjct: 288 --GEQLKDDWQALADAPVGEKIQIIYIGYNNLKTFPVETSLQKMKKLGMLECLYNQLE-G 344

Query: 130 IPESIGSMKSLESIDFSANH----------------YLNLSNNNLTGEIPSGIQLQGFHQ 173
              + GS   L S++ + N                  L+ ++N L   IP+    +    
Sbjct: 345 KLPAFGSEIKLASLNLAYNQITEIPANFCGFTEQVENLSFAHNKLK-YIPNIFDAKSVSV 403

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 65.8 bits (161), Expect = 4e-13
 Identities = 20/160 (12%), Positives = 47/160 (29%), Gaps = 21/160 (13%)

Query: 21  GALSSLESLHLHRNHLSGAIPLSLQNGTHFEVLDLRENAFIRDVPKWIKKSLLALFM--- 77
            +   +  L L     SG +P ++   T  EVL L  +    +   +  K + A      
Sbjct: 78  NSNGRVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQ 137

Query: 78  -------MKGKAFEYSTNLNVLRVIE--LSKNNFLGEIAKGVTNPGASQTLNLSQNSFSR 128
                   +    +Y    +   +I+  ++ +     I K          +    N+ + 
Sbjct: 138 KQKMRMHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNNIT- 196

Query: 129 TIPESIGSMKSLESIDFSANHYLNLSNNNLTGEIPSGIQL 168
            + +++  +  L            + N+    E       
Sbjct: 197 FVSKAVMRLTKLR--------QFYMGNSPFVAENICEAWE 228

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 65.8 bits (161), Expect = 4e-13
 Identities = 34/190 (17%), Positives = 59/190 (31%), Gaps = 41/190 (21%)

Query: 17  PTSTGALSSLESLHLHRNHLSGAIPLSLQNGTHFEVLDLRENAFIRDVPKWIK---KSLL 73
            TS   +  L  L    N L G +P +  +      L+L  N  I ++P       + + 
Sbjct: 323 ETSLQKMKKLGMLECLYNQLEGKLP-AFGSEIKLASLNLAYN-QITEIPANFCGFTEQVE 380

Query: 74  ALFMMKGK-----AFEYSTNLNVLRVIELSKNNFLGEIAKGVTNPGAS-------QTLNL 121
            L     K         + +++V+  I+ S N       K       +        ++NL
Sbjct: 381 NLSFAHNKLKYIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINL 440

Query: 122 SQNSFSRTIPESIGSMKSLESIDFSANH-----------------------YLNLSNNNL 158
           S N  S+   E   +   L SI+   N                         ++L  N L
Sbjct: 441 SNNQISKFPKELFSTGSPLSSINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFNKL 500

Query: 159 TGEIPSGIQL 168
           T  +    + 
Sbjct: 501 TK-LSDDFRA 509

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 61.6 bits (150), Expect = 1e-11
 Identities = 20/167 (11%), Positives = 44/167 (26%), Gaps = 20/167 (11%)

Query: 7   KIQHKFSRSFPTSTGALSSLESLHLHRNHLSGAIP--LSLQNGTHFEVLDLRENAFIRDV 64
             +       P    A  S E     R H           ++ +      +  +   + +
Sbjct: 116 GEKVNERLFGPKGISANMSDEQKQKMRMHYQKTFVDYDPREDFSDLIKDCINSDPQQKSI 175

Query: 65  PKWIK--KSLLALFMMKGKAFEYS---TNLNVLRVIELSKNNFLGEIAKGVTNPGASQTL 119
            K  +       +  +       S     L  LR   +  + F+ E         A +  
Sbjct: 176 KKSSRITLKDTQIGQLSNNITFVSKAVMRLTKLRQFYMGNSPFVAEN-----ICEAWENE 230

Query: 120 NLSQNSFSRTIPESIGSMKSLESIDFSANHYLNLSNNNLTGEIPSGI 166
           N       +T      ++K L          + + N     ++P+ +
Sbjct: 231 NSEYAQQYKTEDLKWDNLKDLT--------DVEVYNCPNLTKLPTFL 269

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 56.2 bits (136), Expect = 8e-10
 Identities = 26/179 (14%), Positives = 49/179 (27%), Gaps = 46/179 (25%)

Query: 15  SFPTSTGALSSLESLHLHRNHL-SGAIPLSLQNGTHFEVLDLRENAFIRDVPKWIKKSLL 73
                      ++ +++  N+L +  +  SLQ      +L+   N  +            
Sbjct: 296 QALADAPVGEKIQIIYIGYNNLKTFPVETSLQKMKKLGMLECLYNQ-LEGKLPAF----- 349

Query: 74  ALFMMKGKAFEYSTNLNVLRVIELSKNNFLGEIAKGVTNPGASQTLNLSQNSFSRTIPE- 132
                         +   L  + L+ N      A         + L+ + N     IP  
Sbjct: 350 -------------GSEIKLASLNLAYNQITEIPANFCGFTEQVENLSFAHNKLK-YIPNI 395

Query: 133 -SIGSMKSLESIDFSANH-----------------------YLNLSNNNLTGEIPSGIQ 167
               S+  + +IDFS N                         +NLSNN ++        
Sbjct: 396 FDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFS 454

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 46.6 bits (111), Expect = 2e-06
 Identities = 19/171 (11%), Positives = 38/171 (22%), Gaps = 37/171 (21%)

Query: 8   IQHKFSRSFPTSTGALSSLESLHLHRNHLSGAIPLSLQNG--THFEVLDLRENAFIRDVP 65
           I     +    +      L S+ L  N L+  +    +     +   +DL  N+F    P
Sbjct: 472 IPKNSLKDENENFKNTYLLTSIDLRFNKLTK-LSDDFRATTLPYLVGIDLSYNSF-SKFP 529

Query: 66  KWIKKSLLALFMMKGKAFEYSTNLNVLRVIELSKNNFLGEIAKGVTN------------- 112
                    L               +    +   N  L E  +G+T              
Sbjct: 530 TQPLN-SSTL-----------KGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSND 577

Query: 113 ----PGAS----QTLNLSQNSFSRTIPESIGSMKSLESIDFSANHYLNLSN 155
                         L++  N         +             +   ++  
Sbjct: 578 IRKVNEKITPNISVLDIKDNPNISIDLSYVCPYIEAGMYMLFYDKTQDIRG 628

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 40.4 bits (95), Expect = 2e-04
 Identities = 9/75 (12%), Positives = 19/75 (25%), Gaps = 20/75 (26%)

Query: 117 QTLNLSQNSFSRTIPESIGSMKSLESIDFSANH--------------------YLNLSNN 156
             L+L     S  +P++IG +  LE +   ++                            
Sbjct: 84  TGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQKQKMRM 143

Query: 157 NLTGEIPSGIQLQGF 171
           +           + F
Sbjct: 144 HYQKTFVDYDPREDF 158

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 71.6 bits (176), Expect = 4e-15
 Identities = 31/180 (17%), Positives = 60/180 (33%), Gaps = 25/180 (13%)

Query: 9   QHKFSRSFPTSTGALSSLESLHLHRNHLSGAIPLSLQNGTHFEVLDLRENAFIRDVPKWI 68
              F      S    +SL+ L L  N +   +  +       E LD + +   +     +
Sbjct: 358 GLSFKGCCSQSDFGTTSLKYLDLSFNGVIT-MSSNFLGLEQLEHLDFQHSNLKQMSEFSV 416

Query: 69  KKSLLALFM-------MKGKAFEYSTNLNVLRVIELSKNNFLGEIAKGVTNPGAS-QTLN 120
             SL  L          +         L+ L V++++ N+F       +     +   L+
Sbjct: 417 FLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLD 476

Query: 121 LSQNSFSRTIPESIGSMKSLESIDFSANH----------------YLNLSNNNLTGEIPS 164
           LSQ    +  P +  S+ SL+ ++ S N+                 L+ S N++      
Sbjct: 477 LSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQ 536

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 70.1 bits (172), Expect = 2e-14
 Identities = 32/172 (18%), Positives = 55/172 (31%), Gaps = 35/172 (20%)

Query: 11  KFSRSFPTST-GALSSLESLHLHRNHLSGAIPLSLQNGTHFEVLDLRENAFIRDVPKWIK 69
              +    S   +L +L  L +   H   A        +  EVL +  N+F  +      
Sbjct: 407 NLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLP--- 463

Query: 70  KSLLALFMMKGKAFEYSTNLNVLRVIELSKNNFLGEIAKGVTNPGASQTLNLSQNSFSRT 129
                         +  T L  L  ++LS+            +  + Q LN+S N+F   
Sbjct: 464 --------------DIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSL 509

Query: 130 IPESIGSMKSLESIDFSANH-----------------YLNLSNNNLTGEIPS 164
                  + SL+ +D+S NH                 +LNL+ N+       
Sbjct: 510 DTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTCEH 561

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 66.2 bits (162), Expect = 3e-13
 Identities = 27/165 (16%), Positives = 53/165 (32%), Gaps = 11/165 (6%)

Query: 11  KFSRSFPTSTGALSSLESLHLHRNHLSGAIPLSLQNGTHFEVLDLRENAFIRDVPKWIK- 69
                   S  +   L+ L L R  +      + Q+ +H   L L  N            
Sbjct: 39  PLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSG 98

Query: 70  -KSLLALFM----MKGKAFEYSTNLNVLRVIELSKNNFLG-EIAKGVTNPGASQTLNLSQ 123
             SL  L      +         +L  L+ + ++ N     ++ +  +N    + L+LS 
Sbjct: 99  LSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSS 158

Query: 124 NSFSRTIPESIGSMKSLESIDFSANHYLNLSNNNLTGEIPSGIQL 168
           N         +  +  +  ++ S    L+LS N +    P   + 
Sbjct: 159 NKIQSIYCTDLRVLHQMPLLNLS----LDLSLNPMNFIQPGAFKE 199

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 65.4 bits (160), Expect = 5e-13
 Identities = 34/168 (20%), Positives = 49/168 (29%), Gaps = 39/168 (23%)

Query: 17  PTSTGALSSLESLHLHRNHLS--GAIPLSLQNGTHFEVLDLRENAFIRDVPKWIKKSLLA 74
             S   L SLE L L RN LS  G    S    T  + LDL  N  I     ++      
Sbjct: 340 AFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFL------ 393

Query: 75  LFMMKGKAFEYSTNLNVLRVIELSKNNFLGEIAKGVTNPGAS-QTLNLSQNSFSRTIPES 133
                         L  L  ++   +N        V     +   L++S           
Sbjct: 394 -------------GLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGI 440

Query: 134 IGSMKSLESIDFSANH-----------------YLNLSNNNLTGEIPS 164
              + SLE +  + N                  +L+LS   L    P+
Sbjct: 441 FNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPT 488

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 64.3 bits (157), Expect = 1e-12
 Identities = 30/175 (17%), Positives = 57/175 (32%), Gaps = 37/175 (21%)

Query: 24  SSLESLHLHRNHLSGAIPLSLQNGTHFEVLDLRENAFIRDVPKWIKKSLLALFMMKGKAF 83
            S ++L L  N L      S  +    +VLDL          + I+              
Sbjct: 28  FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEI-----QTIEDGAYQ--------- 73

Query: 84  EYSTNLNVLRVIELSKNNFLGEIAKGVTNPGASQTLNLSQNSFSRTIPESIGSMKSLESI 143
               +L+ L  + L+ N          +   + Q L   + + +      IG +K+L+ +
Sbjct: 74  ----SLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKEL 129

Query: 144 DFSANH-----------------YLNLSNNNLTGEIPSGIQLQGFHQSRFAGSEL 181
           + + N                  +L+LS+N +     +   L+  HQ       L
Sbjct: 130 NVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTD--LRVLHQMPLLNLSL 182

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 62.0 bits (151), Expect = 7e-12
 Identities = 33/177 (18%), Positives = 62/177 (35%), Gaps = 25/177 (14%)

Query: 12  FSRSFPTSTGALSSLESLHLHRNHLSGAIPLSLQNGTHFEVLDLRENAFIRDVPKWIKKS 71
           +          L+++ S  L    +      S      ++ L+L    F    P    KS
Sbjct: 270 YLDDIIDLFNCLTNVSSFSLVSVTIERVKDFS--YNFGWQHLELVNCKF-GQFPTLKLKS 326

Query: 72  LLALFM--MKGKAFEYSTNLNVLRVIELSKN--NFLGEIAKGVTNPGASQTLNLSQNSFS 127
           L  L     KG       +L  L  ++LS+N  +F G  ++      + + L+LS N   
Sbjct: 327 LKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVI 386

Query: 128 RTIPESIGSMKSLESIDFSANH-----------------YLNLSNNNLTGEIPSGIQ 167
            T+  +   ++ LE +DF  ++                 YL++S+ +          
Sbjct: 387 -TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFN 442

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 55.8 bits (135), Expect = 1e-09
 Identities = 27/160 (16%), Positives = 47/160 (29%), Gaps = 30/160 (18%)

Query: 11  KFSRSFPTSTGALSSLESLHLHRNHLSGAIPLSLQNGTHFEVLDLRENAFIRDVPKWIKK 70
                   +   LSSL+ L     +L+      + +    + L++  N            
Sbjct: 87  PIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKL----- 141

Query: 71  SLLALFMMKGKAFEYSTNLNVLRVIELSKNNFLGEIAKGVTN----PGASQTLNLSQNSF 126
                     + F   TNL  L    LS N         +      P  + +L+LS N  
Sbjct: 142 ---------PEYFSNLTNLEHLD---LSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPM 189

Query: 127 SRTIPESIGSMKSLESIDFSANHYLNLSNNNLTGEIPSGI 166
           +   P +   ++          H L L NN  +  +    
Sbjct: 190 NFIQPGAFKEIR---------LHKLTLRNNFDSLNVMKTC 220

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 51.2 bits (123), Expect = 4e-08
 Identities = 30/178 (16%), Positives = 53/178 (29%), Gaps = 24/178 (13%)

Query: 12  FSRSFPTSTGALSSLESLHLHRNHLS------GAIPLSLQNGTHFEVLDLRENAFIRDVP 65
                     AL  L +L +    L+        I       T+     L     I  V 
Sbjct: 240 EGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVT-IERVK 298

Query: 66  KWIKKSLLALFMMKGKAFEYSTNLNVLRVIELSKNNFLGEIAKGVTNPGASQTLNLSQN- 124
            +          +    F     L +  +  L+  +  G  A    +  + + L+LS+N 
Sbjct: 299 DFSYNFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNG 358

Query: 125 -SFSRTIPESIGSMKSLESIDFSANH---------------YLNLSNNNLTGEIPSGI 166
            SF     +S     SL+ +D S N                +L+  ++NL       +
Sbjct: 359 LSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSV 416

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 49.3 bits (118), Expect = 2e-07
 Identities = 33/175 (18%), Positives = 64/175 (36%), Gaps = 30/175 (17%)

Query: 6   LKIQH-KFSRSFPTST-GALSSLESLHLHRNHLSGAIPLSLQNGTHFEVLDLRENAFIRD 63
           LK+    F  +F       L +L  L L +  L    P +  + +  +VL++  N F   
Sbjct: 450 LKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSL 509

Query: 64  VPKWIKKSLLALFMMKGKAFEYSTNLNVLRVIELSKNNFLGEIAKGVTNPGAS-QTLNLS 122
                K                   LN L+V++ S N+ +    + + +  +S   LNL+
Sbjct: 510 DTFPYK------------------CLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLT 551

Query: 123 QNSFSRTIPESIGSMKSLESIDFSANHYLNLSNNNLTGEIPS---GIQLQGFHQS 174
           QN F+ T       ++ ++         L +    +    PS   G+ +   + +
Sbjct: 552 QNDFACTCE-HQSFLQWIKD-----QRQLLVEVERMECATPSDKQGMPVLSLNIT 600

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 43.1 bits (102), Expect = 2e-05
 Identities = 29/173 (16%), Positives = 46/173 (26%), Gaps = 29/173 (16%)

Query: 14  RSFPTSTGALSSLESLHLHRNHLSGAIPLSLQNG-THFEVLDLRENAF--IRDVPKWIKK 70
                       L  L L  N  S  +  +   G    EV  L    F    ++ K+ K 
Sbjct: 190 NFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKS 249

Query: 71  SLLALFMMKGKAFEYST-------------NLNVLRVIELSKNNFLGEIAKGVTNPGASQ 117
           +L  L  +  + F  +               L  +    L             +     Q
Sbjct: 250 ALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKD--FSYNFGWQ 307

Query: 118 TLNLSQNSFSRTIPESIGSMKSLESIDFSAN-----------HYLNLSNNNLT 159
            L L    F +     + S+K L                    +L+LS N L+
Sbjct: 308 HLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLS 360

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 67.3 bits (165), Expect = 1e-13
 Identities = 32/194 (16%), Positives = 61/194 (31%), Gaps = 33/194 (17%)

Query: 15  SFPTSTGALSSLESLHLHRNHLSGAIPLSLQNGTHFEVLDLRENAFIRDVPKWIKKSLLA 74
           S P+    L +L  L L  N+++      L+     E+LDL+ N            + L 
Sbjct: 471 SSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNL----------ARLW 520

Query: 75  LFMMKGKAFEYSTNLNVLRVIELSKNNFLGEIAKGVTNPGASQTLNLSQNSFSRTIPESI 134
                G    +   L+ L ++ L  N F     +   +    + ++L  N+ +       
Sbjct: 521 KHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVF 580

Query: 135 GSMKSLESIDFSANH-----------------YLNLSNNNLTGEIPSGIQLQGF------ 171
            +  SL+S++   N                   L++  N       S      +      
Sbjct: 581 NNQVSLKSLNLQKNLITSVEKKVFGPAFRNLTELDMRFNPFDCTCESIAWFVNWINETHT 640

Query: 172 HQSRFAGSELCGAP 185
           +    +   LC  P
Sbjct: 641 NIPELSSHYLCNTP 654

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 66.9 bits (164), Expect = 2e-13
 Identities = 25/151 (16%), Positives = 41/151 (27%), Gaps = 25/151 (16%)

Query: 19  STGALSSLESLHLHRNHLSGAIPLSLQNGTHFEVLDLRENAFIRDVPKWIKKSLLALFMM 78
              A SSL+ L L  N +    P           L L        + + +   L      
Sbjct: 166 DIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLEL------ 219

Query: 79  KGKAFEYSTNLNVLRVIELSKNNFLGEIAKGVTNPGAS--QTLNLSQNSFSRTIPESIGS 136
                        +R + LS +               +    L+LS N+ +    +S   
Sbjct: 220 ---------ANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAW 270

Query: 137 MKSLESIDFSANHYLNLSNNNLTGEIPSGIQ 167
           +  LE        Y  L  NN+       + 
Sbjct: 271 LPQLE--------YFFLEYNNIQHLFSHSLH 293

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 66.6 bits (163), Expect = 2e-13
 Identities = 28/154 (18%), Positives = 48/154 (31%), Gaps = 21/154 (13%)

Query: 11  KFSRSFPTSTGALSSLESLHLHRNHLSGAIPLSLQNGTHFEVLDLRENAFIRDVPKWIKK 70
              +          +L +L L  N LS     +     + + L L  N         +K 
Sbjct: 108 SIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQA-----LKS 162

Query: 71  SLLALFMMKGKAFEYSTNLNVLRVIELSKNNFLGEIAKGVTNPGASQTLNLSQNSFSRTI 130
             L +F             + L+ +ELS N             G    L L+      ++
Sbjct: 163 EELDIF-----------ANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSL 211

Query: 131 PESIGSMKSLESIDFSANHYLNLSNNNLTGEIPS 164
            E +    +  SI       L+LSN+ L+    +
Sbjct: 212 TEKLCLELANTSI-----RNLSLSNSQLSTTSNT 240

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 66.2 bits (162), Expect = 3e-13
 Identities = 32/187 (17%), Positives = 54/187 (28%), Gaps = 33/187 (17%)

Query: 11  KFSRSFPTST-GALSSLESLHLHRNHLSGAIPLSLQNGTHFEVLDLRENAF--IRDVPKW 67
           +  +         L ++  ++L  N        S       + L LR  A   +   P  
Sbjct: 416 EIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSP 475

Query: 68  IK--KSLLALFM----MKGKAFEYSTNLNVLRVIELSKNN--------FLGEIAKGVTNP 113
            +  ++L  L +    +     +    L  L +++L  NN          G     +   
Sbjct: 476 FQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGL 535

Query: 114 GASQTLNLSQNSFSRTIPESIGSMKSLESIDFSANH----------------YLNLSNNN 157
                LNL  N F     E    +  L+ ID   N+                 LNL  N 
Sbjct: 536 SHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNL 595

Query: 158 LTGEIPS 164
           +T     
Sbjct: 596 ITSVEKK 602

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 63.9 bits (156), Expect = 2e-12
 Identities = 28/164 (17%), Positives = 48/164 (29%), Gaps = 34/164 (20%)

Query: 21  GALSSLESLHLHRNHLSGAIPLSLQNGTHFEVLDLRENAFIRDVPKWIKKSLLALFMMKG 80
              +++  L+L  N L      +    +    LD+  N         ++  L        
Sbjct: 22  DLPTNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTI-----SKLEPELCQ------ 70

Query: 81  KAFEYSTNLNVLRVIELSKNNFLGEIAKGVTNPGASQTLNLSQNSFSRTIPESIGSMKSL 140
                   L +L+V+ L  N       K          L+L  NS  +         K+L
Sbjct: 71  -------KLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNL 123

Query: 141 ESIDFSANH----------------YLNLSNNNLTGEIPSGIQL 168
            ++D S N                  L LSNN +       + +
Sbjct: 124 ITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDI 167

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 63.1 bits (154), Expect = 4e-12
 Identities = 36/175 (20%), Positives = 56/175 (32%), Gaps = 36/175 (20%)

Query: 11  KFSRSFPTSTGALSSLESLHLHRNHLSGAIPLSLQNGTHFEVLDLRENAFIRDVPKWIKK 70
           +  R    +    S L SL +  N +S   P   Q     +VL+L+ N  +  +      
Sbjct: 36  QLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNE-LSQLSD---- 90

Query: 71  SLLALFMMKGKAFEYSTNLNVLRVIELSKNNFLGEIAKGVTNPGASQTLNLSQNSFSRTI 130
                     K F + TNL  L    L  N+                TL+LS N  S T 
Sbjct: 91  ----------KTFAFCTNLTELH---LMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTK 137

Query: 131 PESIGSMKSLESIDFSANH------------------YLNLSNNNLTGEIPSGIQ 167
             +   +++L+ +  S N                    L LS+N +    P    
Sbjct: 138 LGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKEFSPGCFH 192

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 62.3 bits (152), Expect = 6e-12
 Identities = 31/182 (17%), Positives = 58/182 (31%), Gaps = 39/182 (21%)

Query: 22  ALSSLESLHLHRNHLSGAIPLSLQNGTHFEVLDLRENAFIRDVPKWIKKSLLALFMMK-- 79
           A S L  L+L +N +S     +     H EVLDL  N   +++     + L  +F +   
Sbjct: 379 AHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLS 438

Query: 80  --------GKAFEYSTNLNVLRVIELSKNNF--LGEIAKGVTNPGASQTLNLSQNSFSRT 129
                     +F     +  L+ + L +     +               L+LS N+ +  
Sbjct: 439 YNKYLQLTRNSFA---LVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANI 495

Query: 130 IPESIGSMKSLESIDFSANH------------------------YLNLSNNNLTGEIPSG 165
             + +  ++ LE +D   N+                         LNL +N         
Sbjct: 496 NDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEV 555

Query: 166 IQ 167
            +
Sbjct: 556 FK 557

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 61.6 bits (150), Expect = 1e-11
 Identities = 29/175 (16%), Positives = 56/175 (32%), Gaps = 29/175 (16%)

Query: 11  KFSRSFPTSTGALSSLESLHLHRNHLSGAIPLSLQNGTHFEVLDLRENAFIRDVPKWIKK 70
             +     S   L  LE   L  N++      SL    +   L+L+ +   + +      
Sbjct: 259 NLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSI------ 312

Query: 71  SLLALFMMKGKAFEYSTNLNVLRVIELSKNNFLGEIAKGVTNPGASQTLNLSQNSFSRTI 130
           SL +L  +   +F     L  L  + +  N+  G  +   T     + L+LS +  S   
Sbjct: 313 SLASLPKIDDFSF---QWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRT 369

Query: 131 PESIG----SMKSLESIDFSANH----------------YLNLSNNNLTGEIPSG 165
             +      +   L  ++ + N                  L+L  N +  E+   
Sbjct: 370 LTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQ 424

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 55.0 bits (133), Expect = 2e-09
 Identities = 31/181 (17%), Positives = 51/181 (28%), Gaps = 45/181 (24%)

Query: 22  ALSSLESLHLHRNHLSGAIPLSLQN--GTHFEVLDLRENAFIRDVPKWIKKSLLALFMMK 79
           A +S+ +L L  + LS     +      T+  +LDL  N                     
Sbjct: 220 ANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFA---------- 269

Query: 80  GKAFEYSTNLNVLRVIELSKNNFLGEIAKGVTNPGASQTLNLSQN---------SFSRTI 130
                    L  L    L  NN     +  +      + LNL ++         S  +  
Sbjct: 270 --------WLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKID 321

Query: 131 PESIGSMKSLESIDFSANH----------------YLNLSNNNLTGEIPSGIQLQGFHQS 174
             S   +K LE ++   N                 YL+LSN+  +    +         S
Sbjct: 322 DFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHS 381

Query: 175 R 175
            
Sbjct: 382 P 382

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 66.1 bits (161), Expect = 4e-13
 Identities = 27/190 (14%), Positives = 51/190 (26%), Gaps = 31/190 (16%)

Query: 2   LQQGLKIQHKFSRSFPTSTGALSSLESLHLHRNHLSGAIPLSLQNGTHFEVLDLRENAFI 61
            +       K   +   S   L  L  + L+       +P  L +    + L++  N   
Sbjct: 469 WEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRG- 527

Query: 62  RDVPKWIKKSLLALFMMKGKAFEYSTNLNVLRVIELSKNNFLGEIAKGVTNPGAS--QTL 119
                    S   L     +  +       +++  +  NN L E     +         L
Sbjct: 528 --------ISAAQLKADWTRLADDEDTGPKIQIFYMGYNN-LEEFPASASLQKMVKLGLL 578

Query: 120 NLSQNSFSRTIPESIGSMKSLESIDFSANH----------------YLNLSNNNLTGEIP 163
           +   N       E+ G+   L  +    N                  L  S+N L   IP
Sbjct: 579 DCVHNKV--RHLEAFGTNVKLTDLKLDYNQIEEIPEDFCAFTDQVEGLGFSHNKLK-YIP 635

Query: 164 SGIQLQGFHQ 173
           +    +  + 
Sbjct: 636 NIFNAKSVYV 645

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 65.3 bits (159), Expect = 7e-13
 Identities = 28/188 (14%), Positives = 49/188 (26%), Gaps = 48/188 (25%)

Query: 15  SFPTSTGALSSLESLHLHRNHLSGAIPLSLQNGTHF-EVLDLRENAFIRDVPKWIKKSLL 73
               + G    L  L L  N +   IP      T   E L    N  ++ +P        
Sbjct: 586 RHLEAFGTNVKLTDLKLDYNQIEE-IPEDFCAFTDQVEGLGFSHNK-LKYIPNIFNAK-- 641

Query: 74  ALFMMKGKAFEYSTNLNVLRVIELSKNNFLGEIAKGVTNPGASQ-----TLNLSQNSFSR 128
                         ++ V+  ++ S N    E      +    +     T+ LS N   +
Sbjct: 642 --------------SVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQK 687

Query: 129 TIPESIGSMKSLESIDFSAN-----------------------HYLNLSNNNLTGEIPSG 165
              E   +   + +I  S N                         ++L  N LT  +   
Sbjct: 688 FPTELFATGSPISTIILSNNLMTSIPENSLKPKDGNYKNTYLLTTIDLRFNKLT-SLSDD 746

Query: 166 IQLQGFHQ 173
            +      
Sbjct: 747 FRATTLPY 754

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 62.2 bits (151), Expect = 8e-12
 Identities = 14/176 (7%), Positives = 43/176 (24%), Gaps = 50/176 (28%)

Query: 15  SFPTSTGALSSLESLHLHRNHLSGAIPLSLQNGTHFEVLDLRENAFIRDVPKWIKKSLLA 74
               +   L+ L+ ++   +  +                +        +           
Sbjct: 439 FISKAIQRLTKLQIIYFANSPFTYDNIAVDWE-----DANSDYAKQYENEELSWS----- 488

Query: 75  LFMMKGKAFEYSTNLNVLRVIELSKNNFLGEIAKGVTNPGASQTLNLSQNSFS------- 127
                        NL  L  +EL     + ++   + +    Q+LN++ N          
Sbjct: 489 -------------NLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKA 535

Query: 128 --RTIPESIGSMKSLESIDFSANH-----------------YLNLSNNNLTGEIPS 164
               + +   +   ++      N+                  L+  +N +   + +
Sbjct: 536 DWTRLADDEDTGPKIQIFYMGYNNLEEFPASASLQKMVKLGLLDCVHNKVR-HLEA 590

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 62.2 bits (151), Expect = 8e-12
 Identities = 25/206 (12%), Positives = 54/206 (26%), Gaps = 48/206 (23%)

Query: 11  KFSRSFPTSTGALSSLESLHLHRNHLS-------GAIPLSLQNGTHFEVLDLRENAFIRD 63
           +  +         S + ++ L  N ++            + +N      +DLR N  +  
Sbjct: 684 EIQKFPTELFATGSPISTIILSNNLMTSIPENSLKPKDGNYKNTYLLTTIDLRFN-KLTS 742

Query: 64  VPKWIKKSLLALFMMKGKAFEYSTNLNVLRVIELSKNNFLGEIAKGVTNP------GASQ 117
           +    + +                 L  L  +++S  N          N       G   
Sbjct: 743 LSDDFRAT----------------TLPYLSNMDVS-YNCFSSFPTQPLNSSQLKAFGIRH 785

Query: 118 TLNLSQNSFSRTIPESIGSMKSLESIDFSANH-------------YLNLSNNNLT-GEIP 163
             +   N   R  P  I +  SL  +   +N               L++++N     ++ 
Sbjct: 786 QRDAEGNRILRQWPTGITTCPSLIQLQIGSNDIRKVDEKLTPQLYILDIADNPNISIDVT 845

Query: 164 SGIQLQGFHQSRFAG---SELCGAPF 186
           S                  ++ G   
Sbjct: 846 SVCPYIEAGMYVLLYDKTQDIRGCDA 871

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 56.0 bits (135), Expect = 1e-09
 Identities = 20/178 (11%), Positives = 50/178 (28%), Gaps = 22/178 (12%)

Query: 11  KFSRSFPTSTGALSSLESLHLHRNHLSGAIPLSLQNGTHFEVLDLRENAFIRDVPKWIKK 70
                 P + G L+ L+ L    +  + +  L        ++ + R++       K    
Sbjct: 334 GAKGRVPDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLD 393

Query: 71  SLLALFMMKGKAFEYSTNLNVLRVIELSK-----------NNFLGEIAKGVTNPGASQTL 119
               L +        + N  +  + + S+            N +  I+K +      Q +
Sbjct: 394 YDQRLNLSDLLQDAINRNPEMKPIKKDSRISLKDTQIGNLTNRITFISKAIQRLTKLQII 453

Query: 120 NLSQNSFSRTIPESIGSMKSLESIDFSANH-----------YLNLSNNNLTGEIPSGI 166
             + + F+           + +      N             + L N     ++P  +
Sbjct: 454 YFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFL 511

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 54.9 bits (132), Expect = 2e-09
 Identities = 21/161 (13%), Positives = 50/161 (31%), Gaps = 21/161 (13%)

Query: 21  GALSSLESLHLHRNHLSGAIPLSLQNGTHFEVLDLRENAFIRDVPKWIKKSLLALFM--- 77
                +  L L      G +P ++   T  +VL    ++       +  + L        
Sbjct: 320 DNNGRVTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEER 379

Query: 78  -------MKGKAFEYSTNLNVLRVIE--LSKNNFLGEIAKGVTNPGASQTLNLSQNSFSR 128
                   K    +Y   LN+  +++  +++N  +  I K          +    N  + 
Sbjct: 380 KHRIRMHYKKMFLDYDQRLNLSDLLQDAINRNPEMKPIKKDSRISLKDTQIGNLTNRIT- 438

Query: 129 TIPESIGSMKSLESIDFSANHYLNLSNNNLTGEIPSGIQLQ 169
            I ++I  +  L+         +  +N+  T +  +     
Sbjct: 439 FISKAIQRLTKLQ--------IIYFANSPFTYDNIAVDWED 471

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 39.9 bits (93), Expect = 3e-04
 Identities = 8/55 (14%), Positives = 19/55 (34%), Gaps = 9/55 (16%)

Query: 117 QTLNLSQNSFSRTIPESIGSMKSLESIDFSANHYLNLSNNNLTGEIPSGIQLQGF 171
             L+L+       +P++IG +  L+         L+   ++ T         +  
Sbjct: 326 TGLSLAGFGAKGRVPDAIGQLTELK--------VLSFGTHSETV-SGRLFGDEEL 371

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 64.3 bits (157), Expect = 1e-12
 Identities = 34/170 (20%), Positives = 53/170 (31%), Gaps = 36/170 (21%)

Query: 14  RSFPTSTGALSSLESLHLHRNHLSGAIPLSLQNGTHFEVLDLRENAFIRDVPKWIKKSLL 73
              P+    LS+L+ L L  N       +S  N      L ++ N    ++         
Sbjct: 291 SELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGT------- 343

Query: 74  ALFMMKGKAFEYSTNLNVLRVIELSKNN--FLGEIAKGVTNPGASQTLNLSQNSFSRTIP 131
                     E   NL  LR ++LS ++          + N    Q+LNLS N       
Sbjct: 344 -------GCLE---NLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKT 393

Query: 132 ESIGSMKSLESIDFSANH-----------------YLNLSNNNLTGEIPS 164
           E+      LE +D +                     LNLS++ L      
Sbjct: 394 EAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQ 443

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 58.9 bits (143), Expect = 9e-11
 Identities = 32/189 (16%), Positives = 53/189 (28%), Gaps = 36/189 (19%)

Query: 17  PTSTGALSSLESLHLHRNHLSGAIPLSLQNGTHFEVLDLRENAFIRDVPKWIKKSLLALF 76
            T+   L +L  L L R  +      + Q+    + L L  N  +  + +          
Sbjct: 50  NTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTAN-PLIFMAE---------- 98

Query: 77  MMKGKAFEYSTNLNVLRVIELSKNNFLGEIAKGVTNPGASQTLNLSQNSFSRTIPESIGS 136
                A      L  L      +          + N    ++L L  N  S         
Sbjct: 99  ----TALSGPKALKHLF---FIQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFP 151

Query: 137 MKSLESIDFSANH------------------YLNLSNNNLTGEIPSGIQLQGFHQSRFAG 178
            + L+ +DF  N                    LNL+ N++ G  P       F    F G
Sbjct: 152 TEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDIAGIEPGAFDSAVFQSLNFGG 211

Query: 179 SELCGAPFP 187
           ++     F 
Sbjct: 212 TQNLLVIFK 220

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 56.9 bits (138), Expect = 5e-10
 Identities = 28/158 (17%), Positives = 47/158 (29%), Gaps = 34/158 (21%)

Query: 23  LSSLESLHLHRNHLSGAIPLSLQNGTHFEVLDLRENAFIRDVPKWIKKSLLALFMMKGKA 82
            +S E L    N L      +     +   LDL     I  + +                
Sbjct: 32  PNSTECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQ-IYWIHE--------------DT 76

Query: 83  FEYSTNLNVLRVIELSKNNFLGEIAKGVTNPGASQTLNLSQNSFSRTIPESIGSMKSLES 142
           F+    L+ L    L+ N  +      ++ P A + L   Q   S      + + K+LES
Sbjct: 77  FQSQHRLDTLV---LTANPLIFMAETALSGPKALKHLFFIQTGISSIDFIPLHNQKTLES 133

Query: 143 IDFSANH----------------YLNLSNNNLTGEIPS 164
           +   +NH                 L+  NN +      
Sbjct: 134 LYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKE 171

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 56.6 bits (137), Expect = 6e-10
 Identities = 28/165 (16%), Positives = 51/165 (30%), Gaps = 39/165 (23%)

Query: 21  GALSSLESLHLHRNHLSGAIPLSLQNGTHFEVLDLRENAFIRDVPKWIKKSLLALFMMKG 80
               +LESL+L  NH+S             +VLD + NA       ++ K  ++      
Sbjct: 126 HNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAI-----HYLSKEDMS------ 174

Query: 81  KAFEYSTNLNVLRVIELS-KNNFLGEIAKGVTNPGASQTLNLSQNSFSRTIPESIG--SM 137
                  +L     + L+   N +  I  G  +    Q+LN         I + +   ++
Sbjct: 175 -------SLQQATNLSLNLNGNDIAGIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTI 227

Query: 138 KSLESIDFSAN------------------HYLNLSNNNLTGEIPS 164
           +SL    F                       +NL  +       +
Sbjct: 228 QSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFFNISSN 272

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 55.0 bits (133), Expect = 2e-09
 Identities = 26/142 (18%), Positives = 51/142 (35%), Gaps = 24/142 (16%)

Query: 23  LSSLESLHLHRNHLSGAIPLSLQNGTHFEVLDLRENAFIRDVPKWIKKSLLALFMMKGKA 82
           L  L+ L+L  + L  +           + L+L+ N F                      
Sbjct: 424 LHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHF-----PKGNIQKTNSL------ 472

Query: 83  FEYSTNLNVLRVIELSKNNFLGEIAKGVTNPGASQTLNLSQNSFSRTIPESIGSMKSLES 142
                 L  L ++ LS  +         T+      ++LS N  + +  E++  +K +  
Sbjct: 473 ----QTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGI-- 526

Query: 143 IDFSANHYLNLSNNNLTGEIPS 164
                  YLNL++N+++  +PS
Sbjct: 527 -------YLNLASNHISIILPS 541

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 54.3 bits (131), Expect = 4e-09
 Identities = 29/198 (14%), Positives = 59/198 (29%), Gaps = 34/198 (17%)

Query: 6   LKIQHKFSRSFPTSTGALSSLESLHLHRNHLSGAIPLSLQNGT--HFEVLDLREN---AF 60
           L +               +  +SL+         I   L+N T     +    +      
Sbjct: 184 LNLNGNDIAGIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDI 243

Query: 61  IRDVPKWIKKSLL--------ALFMMKGKAFEYSTNLNVLRVIELSKNNFLGEIAKGVTN 112
              V + + +  +          F +    F      + L+ ++L+  + L E+  G+  
Sbjct: 244 SPAVFEGLCEMSVESINLQKHYFFNISSNTFH---CFSGLQELDLTATH-LSELPSGLVG 299

Query: 113 PGASQTLNLSQNSFSRTIPESIGSMKSLESIDFSANH-----------------YLNLSN 155
               + L LS N F      S  +  SL  +    N                   L+LS+
Sbjct: 300 LSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSH 359

Query: 156 NNLTGEIPSGIQLQGFHQ 173
           +++       +QL+    
Sbjct: 360 DDIETSDCCNLQLRNLSH 377

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 52.3 bits (126), Expect = 2e-08
 Identities = 29/177 (16%), Positives = 55/177 (31%), Gaps = 40/177 (22%)

Query: 10  HKFSRSFPTSTGALSSLESLHLHRNHL--SGAIPLSLQNGTHFEVLDLRENAFIRDVPKW 67
            K           L +L  L L  + +  S    L L+N +H + L+L  N  +    + 
Sbjct: 336 TKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEA 395

Query: 68  IKKSLLALFMMKGKAFEYSTNLNVLRVIELSKNNFLGEIAKGV-TNPGASQTLNLSQNSF 126
            K                      L +++L+      + A+    N    + LNLS +  
Sbjct: 396 FK------------------ECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLL 437

Query: 127 SRTIPESIGSMKSLESIDFSANH-------------------YLNLSNNNLTGEIPS 164
             +  +    + +L+ ++   NH                    L LS  +L+     
Sbjct: 438 DISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQH 494

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 51.9 bits (125), Expect = 2e-08
 Identities = 25/155 (16%), Positives = 55/155 (35%), Gaps = 20/155 (12%)

Query: 23  LSSLESLHLHRNHLSGAIPLSLQNGTHFEVLDLRENAFIRDVPKWIK--KSLLALFM--- 77
             S+ES++L +++       +    +  + LDL     + ++P  +    +L  L +   
Sbjct: 253 EMSVESINLQKHYFFNISSNTFHCFSGLQELDLTATH-LSELPSGLVGLSTLKKLVLSAN 311

Query: 78  ----MKGKAFEYSTNLNVLRVIELSKNNFLGEIAKGVTNPGAS-QTLNLSQNSFSRTIPE 132
               +   +    +N   L  + +  N    E+  G      + + L+LS +    T   
Sbjct: 312 KFENLCQISA---SNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIE-TSDC 367

Query: 133 SIGSMKSLESIDFSANHYLNLSNNNLTGEIPSGIQ 167
               +++L  +       LNLS N          +
Sbjct: 368 CNLQLRNLSHL-----QSLNLSYNEPLSLKTEAFK 397

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 51.6 bits (124), Expect = 3e-08
 Identities = 23/169 (13%), Positives = 46/169 (27%), Gaps = 28/169 (16%)

Query: 23  LSSLESLHLHRNHLSGAIPLSLQN--GTHFEVLDLRENAFIRDVPKWIKKSL------LA 74
              L+ L    N +       + +        L+L  N  I  +      S         
Sbjct: 152 TEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGN-DIAGIEPGAFDSAVFQSLNFG 210

Query: 75  LFMMKGKAFEYSTNLNVLRVIELS-KNNFLGEIAKGVTNPGAS---QTLNLSQNSFSRTI 130
                   F+   N  +  +   + ++    +I+  V         +++NL ++ F    
Sbjct: 211 GTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFFNIS 270

Query: 131 PESIGSMKSLESIDFSANH---------------YLNLSNNNLTGEIPS 164
             +      L+ +D +A H                L LS N        
Sbjct: 271 SNTFHCFSGLQELDLTATHLSELPSGLVGLSTLKKLVLSANKFENLCQI 319

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 51.6 bits (124), Expect = 3e-08
 Identities = 30/153 (19%), Positives = 47/153 (30%), Gaps = 30/153 (19%)

Query: 11  KFSRSFPTSTGALSSLESLHLHRNHLSGAIPL---SLQNGTHFEVLDLRENAFIRDVPKW 67
               S       L +L+ L+L  NH          SLQ     E+L L     +  + + 
Sbjct: 436 LLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCD-LSSIDQ- 493

Query: 68  IKKSLLALFMMKGKAFEYSTNLNVLRVIELSKNNFLGEIAKGVTNPGASQTLNLSQNSFS 127
                         AF     +N +    LS +N L   +    +      LNL+ N  S
Sbjct: 494 -------------HAFTSLKMMNHVD---LS-HNRLTSSSIEALSHLKGIYLNLASNHIS 536

Query: 128 RTIPESIGSMKSLESIDFSANHYLNLSNNNLTG 160
             +P  +  +             +NL  N L  
Sbjct: 537 IILPSLLPILSQQR--------TINLRQNPLDC 561

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 63.4 bits (155), Expect = 2e-12
 Identities = 27/146 (18%), Positives = 49/146 (33%), Gaps = 19/146 (13%)

Query: 14  RSFPTSTGALSSLESLHLHRNHLSGAIPLSLQNGTHFEVLDLRENAFIRDVPKWIKKSLL 73
           RS P S   L +L+SL +  + LS A+  ++ +    E LDLR    +R+ P        
Sbjct: 196 RSLPASIANLQNLKSLKIRNSPLS-ALGPAIHHLPKLEELDLRGCTALRNYPPIF----- 249

Query: 74  ALFMMKGKAFEYSTNLNVLRVIELSKNNFLGEIAKGVTNPGASQTLNLSQNSFSRTIPES 133
                             L+ + L   + L  +   +      + L+L        +P  
Sbjct: 250 -------------GGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSL 296

Query: 134 IGSMKSLESIDFSANHYLNLSNNNLT 159
           I  + +   I    +    L  +   
Sbjct: 297 IAQLPANCIILVPPHLQAQLDQHRPV 322

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 58.4 bits (142), Expect = 1e-10
 Identities = 29/154 (18%), Positives = 49/154 (31%), Gaps = 28/154 (18%)

Query: 13  SRSFPTSTGALSSLESLHLHRNHLSGAIPLSLQNGTHFEVLDLRENAFIRDVPKWIKKSL 72
           S         L +L+SL L    +  ++P S+ N  + + L +R +  +  +   I    
Sbjct: 172 STDASGEHQGLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSP-LSALGPAI---- 225

Query: 73  LALFMMKGKAFEYSTNLNVLRVIELSKNNFLGEIAKGVTNPGASQTLNLSQNSFSRTIPE 132
                          +L  L  ++L     L             + L L   S   T+P 
Sbjct: 226 --------------HHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPL 271

Query: 133 SIGSMKSLESIDFSANHYLNLSNNNLTGEIPSGI 166
            I  +  LE         L+L        +PS I
Sbjct: 272 DIHRLTQLE--------KLDLRGCVNLSRLPSLI 297

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 48.8 bits (117), Expect = 2e-07
 Identities = 19/156 (12%), Positives = 46/156 (29%), Gaps = 25/156 (16%)

Query: 14  RSFPTSTGALSS--LESLHLHRNHLSGAIPLSLQNGTHFEVLDLRENAFIRDVPKWIKKS 71
           ++        +     +L L    L    P      +H + + +     + ++P  +   
Sbjct: 69  KATADLLEDATQPGRVALELRSVPLP-QFPDQAFRLSHLQHMTIDAAG-LMELPDTM--- 123

Query: 72  LLALFMMKGKAFEYSTNLNVLRVIELSKNNFLGEIAKGVTNPGASQTLNLSQNSFSRTIP 131
                               L  + L++N  L  +   + +    + L++        +P
Sbjct: 124 ---------------QQFAGLETLTLARNP-LRALPASIASLNRLRELSIRACPELTELP 167

Query: 132 ESIGSMKSLESIDFSAN-HYLNLSNNNLTGEIPSGI 166
           E + S  +        N   L L    +   +P+ I
Sbjct: 168 EPLASTDASGEHQGLVNLQSLRLEWTGIR-SLPASI 202

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 47.6 bits (114), Expect = 5e-07
 Identities = 18/143 (12%), Positives = 37/143 (25%), Gaps = 22/143 (15%)

Query: 43  SLQNGTHFEVLDLRENAFIRDVPKWIK--KSLLALFMMKGKAFEYSTNLNVLRVIELSKN 100
              + +  E L  + +  +R     +   +        +  +     N N  ++   +  
Sbjct: 7   HHHHSSGRENLYFQGSTALRPYHDVLSQWQRHYNADRNRWHSAWRQANSNNPQIETRTGR 66

Query: 101 NFLGEIAK--GVTNPGASQTLNLSQNSFSRTIPESIGSMKSLESIDFSAN---------- 148
             L   A             L L         P+    +  L+ +   A           
Sbjct: 67  A-LKATADLLEDATQPGRVALELRSVPLP-QFPDQAFRLSHLQHMTIDAAGLMELPDTMQ 124

Query: 149 -----HYLNLSNNNLTGEIPSGI 166
                  L L+ N L   +P+ I
Sbjct: 125 QFAGLETLTLARNPLR-ALPASI 146

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 58.9 bits (143), Expect = 9e-11
 Identities = 25/169 (14%), Positives = 47/169 (27%), Gaps = 36/169 (21%)

Query: 14  RSFPTSTGALSSLESLHLHRNHLSGAIPLS-LQNGTHFEVLDLRENAFIRDVPKWIKKSL 72
                +   L  L+ L    + L      S   +      LD+       D         
Sbjct: 389 IIMSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFD------- 441

Query: 73  LALFMMKGKAFEYSTNLNVLRVIELSKNNFLGEIAKGVTNPGAS-QTLNLSQNSFSRTIP 131
                     F   T+LN L+   ++ N+F       V     +   L+LS+    +   
Sbjct: 442 --------GIFLGLTSLNTLK---MAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISW 490

Query: 132 ESIGSMKSLESIDFSANH----------------YLNLSNNNLTGEIPS 164
               ++  L+ ++ S N+                 L+ S N +      
Sbjct: 491 GVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIETSKGI 539

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 55.8 bits (135), Expect = 1e-09
 Identities = 26/153 (16%), Positives = 43/153 (28%), Gaps = 33/153 (21%)

Query: 23  LSSLESLHLHRNHLSGAIPLSLQNGTHFEVLDLRENAFIRDVPKWIKKSLLALFMMKGKA 82
           L  L  L +   +            T    L +  N+F  +    +              
Sbjct: 423 LEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNV-------------- 468

Query: 83  FEYSTNLNVLRVIELSKNNFLGEIAKGVTNPGASQTLNLSQNSFSRTIPESIGSMKSLES 142
                N   L  ++LSK                 Q LN+S N+           + SL +
Sbjct: 469 ---FANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLST 525

Query: 143 IDFSANH----------------YLNLSNNNLT 159
           +D S N                 + NL+NN++ 
Sbjct: 526 LDCSFNRIETSKGILQHFPKSLAFFNLTNNSVA 558

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 54.7 bits (132), Expect = 2e-09
 Identities = 39/179 (21%), Positives = 59/179 (32%), Gaps = 33/179 (18%)

Query: 15  SFPTSTGALSSLESLHLHRNHLSGAIPLSLQNG--THFEVLDLRENAFIRDVPKWIK--K 70
           S      AL SL  L L RN LS +   S  +        LDL  N     +       +
Sbjct: 341 SISFKKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNG-AIIMSANFMGLE 399

Query: 71  SLLALFM--------MKGKAFEYSTNLNVLRVIELSKNNFLGEIAKGVTNPGASQTLNLS 122
            L  L           +  AF    +L  L  +++S  N   +         +  TL ++
Sbjct: 400 ELQHLDFQHSTLKRVTEFSAF---LSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMA 456

Query: 123 QNSFSRTIPESI-GSMKSLESIDFSANH----------------YLNLSNNNLTGEIPS 164
            NSF      ++  +  +L  +D S                    LN+S+NNL     S
Sbjct: 457 GNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSS 515

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 52.7 bits (127), Expect = 1e-08
 Identities = 26/161 (16%), Positives = 53/161 (32%), Gaps = 35/161 (21%)

Query: 24  SSLESLHLHRNHLSGAIPLSLQNGTHFEVLDLRENAFIRDVPKWIKKSLLALFMMKGKAF 83
           SS +++ L  N L      S  N +  + LDL     I  +                KA+
Sbjct: 32  SSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCE-IETIED--------------KAW 76

Query: 84  EYSTNLNVLRVIELSKNNFLGEIAKGVTNPGASQTLNLSQNSFSRTIPESIGSMKSLESI 143
               +L+ L    L+ N          +   + + L   +   +      IG + +L+ +
Sbjct: 77  HGLHHLSNLI---LTGNPIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKL 133

Query: 144 DFSANH-----------------YLNLSNNNLTGEIPSGIQ 167
           + + N                  +++LS N +     + +Q
Sbjct: 134 NVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQ 174

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 52.0 bits (125), Expect = 2e-08
 Identities = 27/171 (15%), Positives = 48/171 (28%), Gaps = 40/171 (23%)

Query: 17  PTSTGALSSLESLHLHRNHLSGAIPLSLQNGTHFEVLDLRENAFIRDVPKWIKKSLLALF 76
             S    S L+ L L R  +      +     H   L L  N  I+              
Sbjct: 49  SYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNP-IQSFSP---------- 97

Query: 77  MMKGKAFEYSTNLNVLRVIELSKNNFLGEIAKGVTNPGASQTLNLSQNSFSR-TIPESIG 135
                +F   T+L  L      +       +  +      + LN++ N      +P    
Sbjct: 98  ----GSFSGLTSLENLV---AVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFS 150

Query: 136 SMKSLESIDFSANH--------------------YLNLSNNNLTGEIPSGI 166
           ++ +L  +D S N+                     L++S N +   I    
Sbjct: 151 NLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSLNPID-FIQDQA 200

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 50.8 bits (122), Expect = 5e-08
 Identities = 29/148 (19%), Positives = 46/148 (31%), Gaps = 30/148 (20%)

Query: 23  LSSLESLHLHRNHLSGAIPLSLQNGTHFEVLDLRENAFIRDVPKWIKKSLLALFMMKGKA 82
           L+SLE+L      L+      +      + L++  N FI          L A F      
Sbjct: 103 LTSLENLVAVETKLASLESFPIGQLITLKKLNVAHN-FIHSCK------LPAYF------ 149

Query: 83  FEYSTNLNVLRVIELSKNNFLGEIAKGVTN----PGASQTLNLSQNSFSRTIPESIGSMK 138
               +NL  L  ++LS N         +      P  + +L++S N     I +      
Sbjct: 150 ----SNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSLNPID-FIQDQAFQGI 204

Query: 139 SLESIDFSANHYLNLSNNNLTGEIPSGI 166
            L          L L  N  +  I    
Sbjct: 205 KLH--------ELTLRGNFNSSNIMKTC 224

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 47.3 bits (113), Expect = 9e-07
 Identities = 26/158 (16%), Positives = 47/158 (29%), Gaps = 15/158 (9%)

Query: 23  LSSLESLHLHRNHLSGA-IPLSLQNGTHFEVLDLRENAFIRDVPKWI-------KKSLLA 74
           L +L+ L++  N +    +P    N T+   +DL  N +I+ +            +  L+
Sbjct: 127 LITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYN-YIQTITVNDLQFLRENPQVNLS 185

Query: 75  LFM----MKGKAFEYSTNLNVLRVIELSKNNFLGEIAKGV-TNPGASQTLNLSQNSFSRT 129
           L M    +     +    +  L  + L  N     I K    N        L    F   
Sbjct: 186 LDMSLNPIDFIQDQAFQGIK-LHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDE 244

Query: 130 IPESIGSMKSLESIDFSANHYLNLSNNNLTGEIPSGIQ 167
               I     +E +         L+  N   +      
Sbjct: 245 RNLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVKFH 282

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 45.4 bits (108), Expect = 4e-06
 Identities = 21/159 (13%), Positives = 36/159 (22%), Gaps = 40/159 (25%)

Query: 24  SSLESLHLHRNHLSGAIPLSLQNGTHFEVLDLRENAFIRDVPKWIKKSLLALFMMKGKAF 83
               SL +  N +   I      G     L LR N    ++ K                 
Sbjct: 181 QVNLSLDMSLNPIDF-IQDQAFQGIKLHELTLRGNFNSSNIMKTC--------------- 224

Query: 84  EYSTNLNVLRVIELSKNNFLGEIAKGVTNPGA--------SQTLNLSQNSFSRTIPESIG 135
               NL  L V  L    F  E    +  P               L+  +          
Sbjct: 225 --LQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVKFH 282

Query: 136 SMKSLESIDFSAN--------------HYLNLSNNNLTG 160
            + ++ ++  +                  L++    L  
Sbjct: 283 CLANVSAMSLAGVSIKYLEDVPKHFKWQSLSIIRCQLKQ 321

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 44.3 bits (105), Expect = 8e-06
 Identities = 25/172 (14%), Positives = 42/172 (24%), Gaps = 26/172 (15%)

Query: 2   LQQGLKIQHKFSRSFPTSTGALSSLESLHLHRNHLSGAIP-LSLQNGTHFEVLDLRENAF 60
           +   L +                 L  L L  N  S  I    LQN     V  L    F
Sbjct: 182 VNLSLDMSLNPIDFIQDQAFQGIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEF 241

Query: 61  IRDVPKWIKKSLLALFMMKGKAFEYSTNLNVLRVIELSKNNFLGEIAKGVTNPGASQTLN 120
                    K    L + +    E   ++ +     L+  N   +             ++
Sbjct: 242 ---------KDERNLEIFEPSIMEGLCDVTID-EFRLTYTNDFSDDIVKFHCLANVSAMS 291

Query: 121 LSQNSFSRTIPESIGSMKSLESIDFSAN-------------HYLNLSNNNLT 159
           L+  S      E +      +S+                    L L+ N  +
Sbjct: 292 LAGVSIKY--LEDVPKHFKWQSLSIIRCQLKQFPTLDLPFLKSLTLTMNKGS 341

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 56.1 bits (135), Expect = 7e-10
 Identities = 39/180 (21%), Positives = 64/180 (35%), Gaps = 37/180 (20%)

Query: 23  LSSLESLHLHRNHLSGAIPLSLQNGTH--FEVLDLREN------AFIRDVPKWIKKSLLA 74
           +S L+ L L    ++G  P  L   T     +L+LR        A++ ++ +W+K  L  
Sbjct: 94  ISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKV 153

Query: 75  LFMMKGKAFEYS----TNLNVLRVIELSKNNFLGEIAKGVTNPGAS----QTLNLSQN-- 124
           L + +  +  +S         L  ++LS N  LGE               Q L L     
Sbjct: 154 LSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGM 213

Query: 125 -SFSRTIPESIGSMKSLESIDFSANH-----------------YLNLSNNNLTGEIPSGI 166
            + S        +   L+ +D S N                   LNLS   L  ++P G+
Sbjct: 214 ETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLK-QVPKGL 272

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 51.8 bits (124), Expect = 2e-08
 Identities = 29/178 (16%), Positives = 47/178 (26%), Gaps = 26/178 (14%)

Query: 6   LKIQHKFSRSFPTSTGALSSLESLHLHRNHLSGAIPLSLQNGTHFEVLDLRENAFIRDVP 65
           +    + +            L+ L + + H        ++       LDL +N  + +  
Sbjct: 131 VSWATRDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERG 190

Query: 66  KWIKKSLLALFMMKGKAFEYSTNLNVLRVIELSKNNFLGEIAKGVTNPGASQTLNLSQNS 125
                  L               L VL +         G  +         Q L+LS NS
Sbjct: 191 LISALCPLKF-----------PTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNS 239

Query: 126 FSRTIPESIGS-MKSLESIDFSANH-------------YLNLSNNNLTGEIPSGIQLQ 169
                          L S++ S                 L+LS N L    PS  +L 
Sbjct: 240 LRDAAGAPSCDWPSQLNSLNLSFTGLKQVPKGLPAKLSVLDLSYNRLD-RNPSPDELP 296

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 54.7 bits (132), Expect = 2e-09
 Identities = 26/159 (16%), Positives = 51/159 (32%), Gaps = 35/159 (22%)

Query: 23  LSSLESLHLHRNHLSGAIPLSLQNGTHFEVLDLRENAFIRDVPKWIKKSLLALFMMKGKA 82
           L+SLE L L + +L+     +L +     VL LR    I  +                 +
Sbjct: 151 LNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLN-INAIRD--------------YS 195

Query: 83  FEYSTNLNVLRVIELSKNNFLGEIAKGVTNPGASQTLNLSQNSFSRTIPESIGSMKSLES 142
           F+    L VL   E+S   +L  +           +L+++  + +     ++  +  L  
Sbjct: 196 FKRLYRLKVL---EISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRF 252

Query: 143 IDFSANH----------------YLNLSNNNLTGEIPSG 165
           ++ S N                  + L    L   +   
Sbjct: 253 LNLSYNPISTIEGSMLHELLRLQEIQLVGGQLA-VVEPY 290

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 51.6 bits (124), Expect = 3e-08
 Identities = 35/159 (22%), Positives = 52/159 (32%), Gaps = 37/159 (23%)

Query: 24  SSLESLHLHRNHLSGAIPLSLQNGTHFEVLDLRENAFIRDVPKWIKKSLLALFMMKGKAF 83
           +    L L +N +         +  H E L+L EN  +  V                 AF
Sbjct: 32  TETRLLDLGKNRIKTLNQDEFASFPHLEELELNENI-VSAVE--------------PGAF 76

Query: 84  EYSTNLNVLRVIELSKNNFLGEIAKGV-TNPGASQTLNLSQNSFSRTIPESIGSMKSLES 142
               NL  L    L  +N L  I  GV T       L++S+N     +      + +L+S
Sbjct: 77  NNLFNLRTLG---LR-SNRLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKS 132

Query: 143 IDFSANH----------------YLNLSNNNLTGEIPSG 165
           ++   N                  L L   NLT  IP+ 
Sbjct: 133 LEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLT-SIPTE 170

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 51.3 bits (123), Expect = 3e-08
 Identities = 25/161 (15%), Positives = 50/161 (31%), Gaps = 36/161 (22%)

Query: 23  LSSLESLHLHRNHLSGAIPLSLQNGTHFEVLDLRENAFIRDVPKWIKKSLLALFMMKGKA 82
           L +L +L L  N L           ++   LD+ EN  I  +                  
Sbjct: 79  LFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENK-IVILL--------------DYM 123

Query: 83  FEYSTNLNVLRVIELSKNNFLGEIAKGVTNPGAS-QTLNLSQNSFSRTIPESIGSMKSLE 141
           F+   +L  L+ +E+  +N L  I+    +   S + L L + + +    E++  +  L 
Sbjct: 124 FQ---DLYNLKSLEVG-DNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLI 179

Query: 142 SIDFSAN----------------HYLNLSNNNLTGEIPSGI 166
            +                       L +S+      +    
Sbjct: 180 VLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNC 220

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 47.8 bits (114), Expect = 6e-07
 Identities = 28/151 (18%), Positives = 51/151 (33%), Gaps = 17/151 (11%)

Query: 23  LSSLESLHLHRNHLSGAIPLSLQNGTHFEVLDLRENAFIRDVPKWIKKSL----LALFMM 78
           L  L  L L   +++     S +     +VL++    ++  +       L    L++   
Sbjct: 175 LHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHC 234

Query: 79  KGKAFEYST--NLNVLRVIELSKNNFLGEIAKGV-TNPGASQTLNLSQNSFSRTIPESIG 135
              A  Y    +L  LR + LS N  +  I   +       Q + L     +   P +  
Sbjct: 235 NLTAVPYLAVRHLVYLRFLNLSYNP-ISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFR 293

Query: 136 SMKSLESIDFSANHYLNLSNNNLTGEIPSGI 166
            +  L          LN+S N LT  +   +
Sbjct: 294 GLNYLRV--------LNVSGNQLT-TLEESV 315

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 41.6 bits (98), Expect = 6e-05
 Identities = 28/146 (19%), Positives = 56/146 (38%), Gaps = 23/146 (15%)

Query: 6   LKIQH-KFSRSFPTSTGALSSLESLHLHRNHLSGAIPLSLQNGTHFEVLDLRENAFIRDV 64
           L+I H  +  +   +     +L SL +   +L+    L++++  +   L+L  N  I  +
Sbjct: 205 LEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNP-ISTI 263

Query: 65  PKWIKKSLLALFMMKGKAFEYSTNLNVLRVIELSKNNFLGEIAKGV-TNPGASQTLNLSQ 123
                                   L  L+ I+L     L  +           + LN+S 
Sbjct: 264 EGS--------------MLH---ELLRLQEIQLVGGQ-LAVVEPYAFRGLNYLRVLNVSG 305

Query: 124 NSFSRTIPESI-GSMKSLESIDFSAN 148
           N  + T+ ES+  S+ +LE++   +N
Sbjct: 306 NQLT-TLEESVFHSVGNLETLILDSN 330

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 52.0 bits (125), Expect = 2e-08
 Identities = 28/166 (16%), Positives = 50/166 (30%), Gaps = 24/166 (14%)

Query: 23  LSSLESLHLHRNHLSGAIPLSLQNGTHFEVLDLRENAFIRDVPKWIKKSLLALFMMKGKA 82
           L SLE L L  NHLS          +  + L+L  N   + +                  
Sbjct: 73  LGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGN-PYQTLG-------------VTSL 118

Query: 83  FEYSTNLNVLRVIELSKNNFLGEIAKGV-TNPGASQTLNLSQNSFSRTIPESIGSMKSLE 141
           F    NL  L+ + +       EI +       +   L +   S      +S+ S++ + 
Sbjct: 119 F---PNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIH 175

Query: 142 SIDFSANHYLNLSN------NNLTGEIPSGIQLQGFHQSRFAGSEL 181
            +    +    L        +++         L  F  S     E+
Sbjct: 176 HLTLHLSESAFLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEV 221

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 51.3 bits (123), Expect = 4e-08
 Identities = 28/173 (16%), Positives = 60/173 (34%), Gaps = 32/173 (18%)

Query: 9   QHKFSRSFPTSTGALSSLESLHLHRNHLSGAIPLSLQNGTHFEVLDLRENAFIRDVPKWI 68
           Q        T    L  ++ + +  + +        Q+    E LDL EN  + +  K  
Sbjct: 295 QFYLFYDLSTVYSLLEKVKRITVENSKVFLVPCSFSQHLKSLEFLDLSENLMVEEYLKN- 353

Query: 69  KKSLLALFMMKGKAFEYSTNLNVLRVIELSKNNF--LGEIAKGVTNPGASQTLNLSQNSF 126
                                  L+ + LS+N+   + +  + +       +L++S+N+F
Sbjct: 354 --------------SACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTF 399

Query: 127 SRTIPESIGSMKSLESIDFSANH-------------YLNLSNNNLTGEIPSGI 166
              +P+S    + +  ++ S+                L++SNNNL       +
Sbjct: 400 H-PMPDSCQWPEKMRFLNLSSTGIRVVKTCIPQTLEVLDVSNNNLD-SFSLFL 450

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 47.8 bits (114), Expect = 6e-07
 Identities = 32/164 (19%), Positives = 62/164 (37%), Gaps = 39/164 (23%)

Query: 23  LSSLESLHLHRNHLSGAIPLSLQNGTHFEVLDLRENAFIRDVPKWIKKSLLALFMMKGKA 82
             ++  LH+ + +L   +          + + +  +                +F++    
Sbjct: 285 TVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENS---------------KVFLVPCSF 329

Query: 83  FEYSTNLNVLRVIELSKNNFLGEIAKGVTNPGAS---QTLNLSQNSFS--RTIPESIGSM 137
            +   +L  L  ++LS+N  + E  K     GA    QTL LSQN     +   E + ++
Sbjct: 330 SQ---HLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTL 386

Query: 138 KSLESIDFSANH---------------YLNLSNNNLTGEIPSGI 166
           K+L S+D S N                +LNLS+  +   + + I
Sbjct: 387 KNLTSLDISRNTFHPMPDSCQWPEKMRFLNLSSTGIR-VVKTCI 429

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 44.3 bits (105), Expect = 8e-06
 Identities = 29/126 (23%), Positives = 47/126 (37%), Gaps = 4/126 (3%)

Query: 23  LSSLESLHLHRNHLSGAIPLSLQNGTHFEVLDLRENAFIRDVPKWIKKSLLALFMMKGKA 82
           L +L SL + RN     +P S Q       L+L     IR V   I ++L  L +     
Sbjct: 386 LKNLTSLDISRNTFH-PMPDSCQWPEKMRFLNLSST-GIRVVKTCIPQTLEVLDVSNNNL 443

Query: 83  FEYSTNLNVLRVIELSKNNFLGEIAKGVTNPGASQTLNLSQNSFSRTIPESIGSMKSLES 142
             +S  L  L+ + +S  N L  +    +       + +S+N            + SL+ 
Sbjct: 444 DSFSLFLPRLQELYIS-RNKLKTLPDA-SLFPVLLVMKISRNQLKSVPDGIFDRLTSLQK 501

Query: 143 IDFSAN 148
           I    N
Sbjct: 502 IWLHTN 507

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 42.8 bits (101), Expect = 3e-05
 Identities = 29/148 (19%), Positives = 55/148 (37%), Gaps = 29/148 (19%)

Query: 20  TGALSSLESLHLHRNHLSGAIPLSLQNGTHFEVLDLRENAFIRDVPKWIKKSLLALFMMK 79
           +G  ++++SL L  N ++      L+   + +VL L+ +  I  +               
Sbjct: 22  SGLTAAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSR-INTIEG------------- 67

Query: 80  GKAFEYSTNLNVLRVIELSKNNFLGEIAKGVTNPGAS-QTLNLSQNSFSR-TIPESIGSM 137
             AF    +L  L    LS +N L  ++     P +S + LNL  N +    +     ++
Sbjct: 68  -DAFYSLGSLEHLD---LS-DNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNL 122

Query: 138 KSLESIDFSANHYLNLSNNNLTGEIPSG 165
            +L+         L + N     EI   
Sbjct: 123 TNLQ--------TLRIGNVETFSEIRRI 142

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 40.1 bits (94), Expect = 2e-04
 Identities = 24/188 (12%), Positives = 57/188 (30%), Gaps = 40/188 (21%)

Query: 17  PTSTGALSSLESLHLHRNHLSGAIPLSLQNGTHFEVLDLRENAFIR---------DVPKW 67
             S  ++  +  L LH +  +  + +     +    L+LR+    R         +V   
Sbjct: 165 SQSLKSIRDIHHLTLHLSESAFLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSP 224

Query: 68  IKKSLLALFMMKGKAF-------EYSTNLNVLRVIELSKNNF--LGEIAKGVTNPGAS-- 116
           +KK      ++  ++F        Y   L+ +   + + N           V +      
Sbjct: 225 MKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVE 284

Query: 117 ----QTLNLSQNSFSRTIPESIGSMKSLESIDFSANH----------------YLNLSNN 156
               + L++ Q      +      ++ ++ I    +                 +L+LS N
Sbjct: 285 TVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVFLVPCSFSQHLKSLEFLDLSEN 344

Query: 157 NLTGEIPS 164
            +  E   
Sbjct: 345 LMVEEYLK 352

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 51.9 bits (125), Expect = 2e-08
 Identities = 30/164 (18%), Positives = 60/164 (36%), Gaps = 36/164 (21%)

Query: 20  TGALSSLESLHLHRNHLSGAIPLSLQNGTHFEVLDLRENAFIRDVPKWIKKSLLALFMMK 79
                +L+ L +H N ++              V++L  N              L    ++
Sbjct: 117 EKMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNP-------------LKSSGIE 163

Query: 80  GKAFEYSTNLNVLRVIELSKNNFLGEIAKGVTNPGASQTLNLSQNSFSRTIPESIGSMKS 139
             AF+    L+ +R   ++  N +  I +G+  P +   L+L  N  ++    S+  + +
Sbjct: 164 NGAFQGMKKLSYIR---IADTN-ITTIPQGL--PPSLTELHLDGNKITKVDAASLKGLNN 217

Query: 140 LESIDFSAN----------------HYLNLSNNNLTGEIPSGIQ 167
           L  +  S N                  L+L+NN L  ++P G+ 
Sbjct: 218 LAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLA 260

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 46.5 bits (111), Expect = 1e-06
 Identities = 30/149 (20%), Positives = 50/149 (33%), Gaps = 22/149 (14%)

Query: 19  STGALSSLESLHLHRNHLSGAIPLSLQNGTHFEVLDLRENAFIRDVPKWIKKSLLALFMM 78
             G   SL  LHL  N ++     SL+   +   L L  N+ I  V              
Sbjct: 187 PQGLPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNS-ISAVDN------------ 233

Query: 79  KGKAFEYSTNLNVLRVIELSKNNFLGEIAKGVTNPGASQTLNLSQNSFSRTIPESIGSMK 138
              +     N   LR + L+ NN L ++  G+ +    Q + L  N+ S           
Sbjct: 234 --GSL---ANTPHLRELHLN-NNKLVKVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPG 287

Query: 139 SLESIDFSANHYLNLSNNNLT-GEIPSGI 166
                  ++   ++L +N +   EI    
Sbjct: 288 YNT--KKASYSGVSLFSNPVQYWEIQPST 314

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 42.3 bits (100), Expect = 3e-05
 Identities = 29/161 (18%), Positives = 51/161 (31%), Gaps = 40/161 (24%)

Query: 24  SSLESLHLHRNHLSGAIPLSLQNGTHFEVLDLRENAFIRDVPKWIKKSLLALFMMKGKAF 83
                L L  N ++       +N  +   L L  N  I  +                 AF
Sbjct: 52  PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNK-ISKISP--------------GAF 96

Query: 84  EYSTNLNVLRVIELSKNNFLGEIAKGVTNPGASQTLNLSQNSFSRTIPESIGSMKSLESI 143
                L  L    LSKN  L E+ + +  P   Q L + +N  ++        +  +  +
Sbjct: 97  APLVKLERLY---LSKNQ-LKELPEKM--PKTLQELRVHENEITKVRKSVFNGLNQMIVV 150

Query: 144 DFSANH------------------YLNLSNNNLTGEIPSGI 166
           +   N                   Y+ +++ N+T  IP G+
Sbjct: 151 ELGTNPLKSSGIENGAFQGMKKLSYIRIADTNIT-TIPQGL 190

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 42.3 bits (100), Expect = 3e-05
 Identities = 36/169 (21%), Positives = 64/169 (37%), Gaps = 33/169 (19%)

Query: 23  LSSLESLHLHRNHLSGAIPLSLQNGTHFEVLDLRENAFIRDVPKWIKKSLLAL------- 75
           L +L +L L  N +S   P +       E L L +N  ++++P+ + K+L  L       
Sbjct: 75  LKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQ-LKELPEKMPKTLQELRVHENEI 133

Query: 76  FMMKGKAFEYSTNLNVLRVIELSKNNF-LGEIAKGV-TNPGASQTLNLSQNSFSRTIPES 133
             ++   F     LN + V+EL  N      I  G          + ++  + + TIP+ 
Sbjct: 134 TKVRKSVF---NGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNIT-TIPQ- 188

Query: 134 IGSMKSLESIDFSAN----------------HYLNLSNNNLTGEIPSGI 166
            G   SL  +    N                  L LS N+++  + +G 
Sbjct: 189 -GLPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSIS-AVDNGS 235

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 51.6 bits (124), Expect = 2e-08
 Identities = 33/201 (16%), Positives = 63/201 (31%), Gaps = 39/201 (19%)

Query: 6   LKIQHKFSRSFPTSTGALSSLESLHLHRNHLSGAIPLS-LQNGTHFEVLDLRENAFIRDV 64
           L +      +  ++   L  LE L    ++L      S   +  +   LD+      R  
Sbjct: 378 LDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHT-HTRVA 436

Query: 65  PKWIKKSLLALFMMKGKAFEYSTNLNVLRVIELSKNNFLGEIAKGVTNPGAS-QTLNLSQ 123
              I              F   ++L VL+   ++ N+F       +     +   L+LSQ
Sbjct: 437 FNGI--------------FNGLSSLEVLK---MAGNSFQENFLPDIFTELRNLTFLDLSQ 479

Query: 124 NSFSRTIPESIGSMKSLESIDFSANH----------------YLNLSNNNLTGEIPSGIQ 167
               +  P +  S+ SL+ ++ ++N                  + L  N      P    
Sbjct: 480 CQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRIDY 539

Query: 168 LQGF---HQSRFAGSELCGAP 185
           L  +   +  +  GS  C   
Sbjct: 540 LSRWLNKNSQKEQGSAKCSGS 560

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 48.2 bits (115), Expect = 4e-07
 Identities = 33/176 (18%), Positives = 63/176 (35%), Gaps = 39/176 (22%)

Query: 24  SSLESLHLHRNHLSGAIPLSLQNGTHFEVLDLRENAFIRDVPKWIKKSLLALFMMKGKAF 83
            S ++L L  N L      S  +    +VLDL     I+ +                 A+
Sbjct: 28  FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCE-IQTIED--------------GAY 72

Query: 84  EYSTNLNVLRVIELSKNNFLGEIAKGV-TNPGASQTLNLSQNSFSRTIPESIGSMKSLES 142
           +  ++L+ L +      N +  +A G  +   + Q L   + + +      IG +K+L+ 
Sbjct: 73  QSLSHLSTLIL----TGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKE 128

Query: 143 IDFSANH-----------------YLNLSNNNLTGEIPSGIQLQGFHQSRFAGSEL 181
           ++ + N                  +L+LS+N +   I     L+  HQ       L
Sbjct: 129 LNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQ-SIYCTD-LRVLHQMPLLNLSL 182

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 48.2 bits (115), Expect = 4e-07
 Identities = 22/146 (15%), Positives = 44/146 (30%), Gaps = 26/146 (17%)

Query: 23  LSSLESLHLHRNHLSGAIPLSLQNGTHFEVLDLRENAFIRDVPKWIKKSLLALFMMKGKA 82
           LS L +L L  N +      +    +  + L   E   +  +                  
Sbjct: 75  LSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVET-NLASLE--------------NFP 119

Query: 83  FEYSTNLNVLRVIELSKNNFLGEIAKGVTNPGAS--QTLNLSQNSFSRTIPESIGSMKSL 140
             +   L  L    ++ +N +            +  + L+LS N         +  +  +
Sbjct: 120 IGHLKTLKELN---VA-HNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQM 175

Query: 141 ESIDFSANHYLNLSNNNLTGEIPSGI 166
             ++ S    L+LS N +   I  G 
Sbjct: 176 PLLNLS----LDLSLNPMN-FIQPGA 196

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 47.0 bits (112), Expect = 1e-06
 Identities = 40/174 (22%), Positives = 61/174 (35%), Gaps = 36/174 (20%)

Query: 23  LSSLESLHLHRNHLS--GAIPLSLQNGTHFEVLDLRENAFIRDVPKWIK--KSLLALFMM 78
           L SLE L L RN LS  G    S    T  + LDL  N  +  +       + L  L   
Sbjct: 346 LPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNG-VITMSSNFLGLEQLEHLDFQ 404

Query: 79  --------KGKAFEYSTNLNVLRVIELSKNNFLGEIAKGV-TNPGASQTLNLSQNSFSRT 129
                   +   F    NL  L    +S +        G+     + + L ++ NSF   
Sbjct: 405 HSNLKQMSEFSVFLSLRNLIYLD---IS-HTHTRVAFNGIFNGLSSLEVLKMAGNSFQEN 460

Query: 130 I-PESIGSMKSLESIDFSANH----------------YLNLSNNNLTGEIPSGI 166
             P+    +++L  +D S                    LN+++N L   +P GI
Sbjct: 461 FLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLK-SVPDGI 513

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 45.1 bits (107), Expect = 5e-06
 Identities = 27/149 (18%), Positives = 46/149 (30%), Gaps = 32/149 (21%)

Query: 23  LSSLESLHLHRNHLSGAIPLSLQNGTHFEVLDLRENAFIRDVPKWIKKSLLALFMMKGKA 82
           LSSL+ L     +L+      + +    + L++  N  I+                  + 
Sbjct: 99  LSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHN-LIQSFK-------------LPEY 144

Query: 83  FEYSTNLNVLRVIELSKNNFLGEIAKGVTN-----PGASQTLNLSQNSFSRTIPESIGSM 137
           F   TNL  L +     +N +  I           P  + +L+LS N  +  I       
Sbjct: 145 FSNLTNLEHLDL----SSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMN-FIQPGAFKE 199

Query: 138 KSLESIDFSANHYLNLSNNNLTGEIPSGI 166
             L          L L NN  +  +    
Sbjct: 200 IRLH--------KLTLRNNFDSLNVMKTC 220

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 51.2 bits (123), Expect = 3e-08
 Identities = 30/145 (20%), Positives = 49/145 (33%), Gaps = 28/145 (19%)

Query: 23  LSSLESLHLHRNHLSGAIPLSLQNGTHFEVLDLRENAFIRDVPKWIKKSLLALFMMKGKA 82
           L +L  L +   H   A        +  EVL +  N+F  +                   
Sbjct: 125 LRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLP--------------DI 170

Query: 83  FEYSTNLNVLRVIELSKNNFLGEIAKGVTNPGAS-QTLNLSQNSFSRTIPESIGSMKSLE 141
           F    NL  L   +LS+   L +++    N  +S Q LN+S N+F          + SL+
Sbjct: 171 FTELRNLTFL---DLSQCQ-LEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQ 226

Query: 142 SIDFSANHYLNLSNNNLTGEIPSGI 166
                    L+ S N++        
Sbjct: 227 --------VLDYSLNHIM-TSKKQE 242

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 45.0 bits (107), Expect = 3e-06
 Identities = 27/164 (16%), Positives = 49/164 (29%), Gaps = 34/164 (20%)

Query: 20  TGALSSLESLHLHRNHLSGAIPLSLQNGTHFEVLDLRENAFIRDVPKWIKKSLLALFMMK 79
           TG  SS   L L  N L           T    L L  N              L+     
Sbjct: 24  TGIPSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSN-------------GLSFKGCC 70

Query: 80  GKAFEYSTNLNVLRVIELSKNNFLGEIAKGVTNPGASQTLNLSQNSFSRTIPESI-GSMK 138
            ++         L+ ++LS N  +  ++         + L+   ++  +    S+  S++
Sbjct: 71  SQSD---FGTTSLKYLDLSFNG-VITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLR 126

Query: 139 SLESIDFSANH----------------YLNLSNNNLTGEIPSGI 166
           +L  +D S  H                 L ++ N+        I
Sbjct: 127 NLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDI 170

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 51.4 bits (123), Expect = 3e-08
 Identities = 26/165 (15%), Positives = 54/165 (32%), Gaps = 27/165 (16%)

Query: 6   LKIQHKFSRSFPTSTGALSSLESLHLHRNHLSGAIPLSLQNGTHFEVLDLRENAFIRDVP 65
           L I      S P        L +L +  N L+ ++P+         +        +  +P
Sbjct: 66  LVIPDNNLTSLPAL---PPELRTLEVSGNQLT-SLPVLPPGLLELSIFSNPLTH-LPALP 120

Query: 66  KWIKKSLLALFMMKGKAFEYSTNLNVLRVIELSKNNFLGEIAKGVTNPGASQTLNLSQNS 125
                 L  L++   +          L+ + +S +N L  +      P     L    N 
Sbjct: 121 ----SGLCKLWIFGNQLTSLPVLPPGLQELSVS-DNQLASLPAL---PSELCKLWAYNNQ 172

Query: 126 FSRTIPESIGSMKSLESIDFSANHYLNLSNNNLTGEIPSGI-QLQ 169
            + ++P     ++            L++S+N L   +P+   +L 
Sbjct: 173 LT-SLPMLPSGLQE-----------LSVSDNQLA-SLPTLPSELY 204

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 47.6 bits (113), Expect = 7e-07
 Identities = 24/158 (15%), Positives = 47/158 (29%), Gaps = 30/158 (18%)

Query: 23  LSSLESLHLHRNHLSGAIPLSLQNGTHFEVLDLRENAFIRDVPKWIKK-SLLALFMMKGK 81
            +    L++  + L+  +P  L    H   L + +N  +  +P    +   L +   +  
Sbjct: 39  NNGNAVLNVGESGLT-TLPDCL--PAHITTLVIPDNN-LTSLPALPPELRTLEVSGNQLT 94

Query: 82  AFEYS-TNLNVLRVIELSKNNFLGEIAKGVTNPGASQTLNLSQNSFSRTIPESIGSMKSL 140
           +       L  L +      +           P     L +  N  + ++P        L
Sbjct: 95  SLPVLPPGLLELSIFSNPLTHL-------PALPSGLCKLWIFGNQLT-SLPVLPP---GL 143

Query: 141 ESIDFSANH------------YLNLSNNNLTGEIPSGI 166
           + +  S N              L   NN LT  +P   
Sbjct: 144 QELSVSDNQLASLPALPSELCKLWAYNNQLT-SLPMLP 180

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 47.2 bits (112), Expect = 8e-07
 Identities = 25/137 (18%), Positives = 50/137 (36%), Gaps = 19/137 (13%)

Query: 23  LSSLESLHLHRNHLSGAIPLSLQNGTHFEVLDLRENAFIRDVPKWIKKSLLALFMMKGKA 82
            S L+ L +  N L+ ++P            + R    +  +P      L  L +   + 
Sbjct: 180 PSGLQELSVSDNQLA-SLPTLPSELYKLWAYNNR----LTSLPALPS-GLKELIVSGNRL 233

Query: 83  FEYSTNLNVLRVIELSKNNFLGEIAKGVTNPGASQTLNLSQNSFSRTIPESIGSMKSLES 142
                  + L+ + +S  N L  +      P    +L++ +N  +  +PES+  + S   
Sbjct: 234 TSLPVLPSELKELMVS-GNRLTSLPM---LPSGLLSLSVYRNQLT-RLPESLIHLSSET- 287

Query: 143 IDFSANHYLNLSNNNLT 159
                   +NL  N L+
Sbjct: 288 -------TVNLEGNPLS 297

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 46.4 bits (110), Expect = 2e-06
 Identities = 30/162 (18%), Positives = 49/162 (30%), Gaps = 24/162 (14%)

Query: 14  RSFPTSTGALSSLESLHLHRNHLSGAIPLSLQNGTHFEVLDLRENAFIRDVPKWIKKSLL 73
            S P     L  L        HL  A+P  L        L +  N  +  +P      L 
Sbjct: 94  TSLPVLPPGLLELSIFSNPLTHLP-ALPSGLCK------LWIFGNQ-LTSLPVLP-PGLQ 144

Query: 74  ALFMMKGKAFEYSTNLNVLRVIELSKNNFLGEIAKGVTNPGASQTLNLSQNSFSRTIPES 133
            L +   +        + L  +    N  L  +      P   Q L++S N  + ++P  
Sbjct: 145 ELSVSDNQLASLPALPSELCKLWAYNNQ-LTSLPM---LPSGLQELSVSDNQLA-SLPTL 199

Query: 134 IGSMKSLESIDFSANH---------YLNLSNNNLTGEIPSGI 166
              +  L + +               L +S N LT  +P   
Sbjct: 200 PSELYKLWAYNNRLTSLPALPSGLKELIVSGNRLT-SLPVLP 240

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 51.0 bits (123), Expect = 4e-08
 Identities = 30/153 (19%), Positives = 55/153 (35%), Gaps = 38/153 (24%)

Query: 21  GALSSLESLHLHRNHLSGAIPLSLQNGTHFEVLDLRENAFIRDVPKWIKKSLLALFMMKG 80
             ++ L SL +  N ++   PL+  N +    L++  N  I D+                
Sbjct: 218 ANMTRLNSLKIGNNKITDLSPLA--NLSQLTWLEIGTNQ-ISDIN--------------- 259

Query: 81  KAFEYSTNLNVLRVIELSKNNFLGEIAKGVTNPGASQTLNLSQNSFSRTIPESIGSMKSL 140
            A +  T L +L V     +N + +I   + N     +L L+ N       E IG + +L
Sbjct: 260 -AVKDLTKLKMLNV----GSNQISDI-SVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNL 313

Query: 141 ESIDFSANH--------------YLNLSNNNLT 159
            ++  S NH                + +N  + 
Sbjct: 314 TTLFLSQNHITDIRPLASLSKMDSADFANQVIK 346

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 46.8 bits (112), Expect = 1e-06
 Identities = 34/160 (21%), Positives = 59/160 (36%), Gaps = 23/160 (14%)

Query: 21  GALSSLESLHLHRNHLSGAIPLSLQNGTHFEVLDLRENAFIRDVPKWIK-KSL--LALFM 77
             L++LE L+L+ N ++   PLS  N      L +  N  I D+       +L  L L  
Sbjct: 63  EYLTNLEYLNLNGNQITDISPLS--NLVKLTNLYIGTNK-ITDISALQNLTNLRELYLNE 119

Query: 78  MKGKAFEYSTNLNVLRVIELSKNNFLGEIAKGVTNPGASQTLNLSQNSFSRTIPESIGSM 137
                     NL  +  + L  N+ L ++   ++N      L ++++      P  I ++
Sbjct: 120 DNISDISPLANLTKMYSLNLGANHNLSDL-SPLSNMTGLNYLTVTESKVKDVTP--IANL 176

Query: 138 KSLESIDFSAN--------------HYLNLSNNNLTGEIP 163
             L S+  + N              HY     N +T   P
Sbjct: 177 TDLYSLSLNYNQIEDISPLASLTSLHYFTAYVNQITDITP 216

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 46.0 bits (110), Expect = 2e-06
 Identities = 30/170 (17%), Positives = 57/170 (33%), Gaps = 24/170 (14%)

Query: 15  SFPTSTGALSSLESLHLHRNHLSGAIPLSLQNGTHFEVLDLRENAFIRDVPKWIK-KSLL 73
           S  +    ++ L  L +  + +    P++  N T    L L  N  I D+       SL 
Sbjct: 146 SDLSPLSNMTGLNYLTVTESKVKDVTPIA--NLTDLYSLSLNYNQ-IEDISPLASLTSLH 202

Query: 74  ALFMMKGK--AFEYSTNLNVLRVIELSKNNFLGEIAKGVTNPGASQTLNLSQNSFSRTIP 131
                  +        N+  L  +++  NN + ++   + N      L +  N  S    
Sbjct: 203 YFTAYVNQITDITPVANMTRLNSLKIG-NNKITDL-SPLANLSQLTWLEIGTNQISD--I 258

Query: 132 ESIGSMKSLESIDFSANH--------------YLNLSNNNLTGEIPSGIQ 167
            ++  +  L+ ++  +N                L L+NN L  E    I 
Sbjct: 259 NAVKDLTKLKMLNVGSNQISDISVLNNLSQLNSLFLNNNQLGNEDMEVIG 308

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 45.6 bits (109), Expect = 2e-06
 Identities = 30/158 (18%), Positives = 58/158 (36%), Gaps = 25/158 (15%)

Query: 21  GALSSLESLHLHRNHLSGAIPLSLQNGTHFEVLDLRENAFIRDVPKWIKK----SLLALF 76
             L++L  L+L+ +++S   PL+  N T    L+L  N  + D    +      + L + 
Sbjct: 107 QNLTNLRELYLNEDNISDISPLA--NLTKMYSLNLGANHNLSD-LSPLSNMTGLNYLTVT 163

Query: 77  MMKGKAFEYSTNLNVLRVIELSKNNFLGEIAKGVTNPGASQTLNLSQNSFSRTIPESIGS 136
             K K      NL  L  + L+ N  + +I   + +  +        N  +   P  + +
Sbjct: 164 ESKVKDVTPIANLTDLYSLSLNYNQ-IEDI-SPLASLTSLHYFTAYVNQITDITP--VAN 219

Query: 137 MKSLESIDFSANH--------------YLNLSNNNLTG 160
           M  L S+    N               +L +  N ++ 
Sbjct: 220 MTRLNSLKIGNNKITDLSPLANLSQLTWLEIGTNQISD 257

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 44.1 bits (105), Expect = 9e-06
 Identities = 21/156 (13%), Positives = 47/156 (30%), Gaps = 40/156 (25%)

Query: 23  LSSLESLHLHRNHLSGAIPLSLQNGTHFEVLDLRENAFIRDVPKWIKKSLLALFMMKGKA 82
           L+      L +  ++  +            L +     +  +                  
Sbjct: 21  LAEGIRAVLQKASVTDVVTQE--ELESITKLVVAGEK-VASIQ----------------G 61

Query: 83  FEYSTNLNVLRVIELSKNNFLGEIAKGVTNPGASQTLNLSQNSFSRTIPESIGSMKSLES 142
            EY TNL  L    L+  N + +I   ++N      L +  N    T   ++ ++ +L  
Sbjct: 62  IEYLTNLEYL---NLN-GNQITDI-SPLSNLVKLTNLYIGTNKI--TDISALQNLTNLRE 114

Query: 143 IDFSANH--------------YLNLSNNNLTGEIPS 164
           +  + ++               LNL  N+   ++  
Sbjct: 115 LYLNEDNISDISPLANLTKMYSLNLGANHNLSDLSP 150

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 50.8 bits (122), Expect = 4e-08
 Identities = 32/167 (19%), Positives = 53/167 (31%), Gaps = 33/167 (19%)

Query: 21  GALSSLESLHLHRNHLSGAIPLSLQNGTHFEVLDLRENAFIRDVPKWIKKSLLALFM--- 77
             + SL   ++  N LS     +L      E LD   N+ I  V   +   L  L +   
Sbjct: 183 SLIPSLFHANVSYNLLS-----TLAIPIAVEELDASHNS-INVVRGPVNVELTILKLQHN 236

Query: 78  --MKGKAFEYSTNLNVLRVIELSKNNFLGEIAKGV-TNPGASQTLNLSQNSFSRTIPESI 134
                       N   L  ++LS N  L +I           + L +S N     +    
Sbjct: 237 NLTDTAWL---LNYPGLVEVDLSYNE-LEKIMYHPFVKMQRLERLYISNNRLV-ALNLYG 291

Query: 135 GSMKSLESIDFSANH---------------YLNLSNNNLTGEIPSGI 166
             + +L+ +D S NH                L L +N++   +    
Sbjct: 292 QPIPTLKVLDLSHNHLLHVERNQPQFDRLENLYLDHNSIV-TLKLST 337

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 47.3 bits (113), Expect = 7e-07
 Identities = 30/161 (18%), Positives = 64/161 (39%), Gaps = 34/161 (21%)

Query: 23  LSSLESLHLHRNHLSGAIPLSLQNGTHFEVLDLRENAFIRDVPKWIKKSLLALFMMKGKA 82
              +E L+L+   +      +       + L +  N  IR +P                 
Sbjct: 68  FRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFN-AIRYLPP--------------HV 112

Query: 83  FEYSTNLNVLRVIELSKNNFLGEIAKGVTNPGAS-QTLNLSQNSFSRTIPESIGSMKSLE 141
           F+   N+ +L V+ L +N+ L  + +G+ +      TL++S N+  R   ++  +  SL+
Sbjct: 113 FQ---NVPLLTVLVLERND-LSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQ 168

Query: 142 SIDFSAN-------------HYLNLSNNNLTGEIPSGIQLQ 169
           ++  S+N              + N+S N L+  +   I ++
Sbjct: 169 NLQLSSNRLTHVDLSLIPSLFHANVSYNLLS-TLAIPIAVE 208

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 44.6 bits (106), Expect = 5e-06
 Identities = 29/179 (16%), Positives = 56/179 (31%), Gaps = 39/179 (21%)

Query: 23  LSSLESLHLHRNHLSGAIPLSLQNGTHFEVLDLRENAFIRDVPKWIKKSLLALFMMKGKA 82
              L +L +  N+L      + Q  T  + L L  N  +  V   +  SL    +     
Sbjct: 140 TPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNR-LTHVDLSLIPSLFHANVSYNLL 198

Query: 83  FEYSTNLNVLRVIELSKNNFLGEIAKGV--------------TNPGAS------QTLNLS 122
              +  +  +  ++ S +N +  +   V              T+            ++LS
Sbjct: 199 STLAIPIA-VEELDAS-HNSINVVRGPVNVELTILKLQHNNLTDTAWLLNYPGLVEVDLS 256

Query: 123 QNSFSRTIPESIGSMKSLESIDFSANH---------------YLNLSNNNLTGEIPSGI 166
            N   + +      M+ LE +  S N                 L+LS+N+L   +    
Sbjct: 257 YNELEKIMYHPFVKMQRLERLYISNNRLVALNLYGQPIPTLKVLDLSHNHLL-HVERNQ 314

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 44.6 bits (106), Expect = 7e-06
 Identities = 27/152 (17%), Positives = 44/152 (28%), Gaps = 35/152 (23%)

Query: 21  GALSSLESLHLHRNHLSGAIPLSLQNGTHFEVLDLRENAFIRDVPKWIKKSLLALFMMKG 80
                L  L L  N+L+      L N      +DL  N  +  +                
Sbjct: 223 PVNVELTILKLQHNNLT-DTA-WLLNYPGLVEVDLSYNE-LEKIMY-------------- 265

Query: 81  KAFEYSTNLNVLRVIELSKNNFLGEIAKGVTNPGASQTLNLSQNSFSRTIPESIGSMKSL 140
             F     +  L  + +S NN L  +          + L+LS N     +  +      L
Sbjct: 266 HPFV---KMQRLERLYIS-NNRLVALNLYGQPIPTLKVLDLSHNHL-LHVERNQPQFDRL 320

Query: 141 ESIDFSAN-------------HYLNLSNNNLT 159
           E++    N               L LS+N+  
Sbjct: 321 ENLYLDHNSIVTLKLSTHHTLKNLTLSHNDWD 352

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 38.9 bits (91), Expect = 6e-04
 Identities = 23/188 (12%), Positives = 55/188 (29%), Gaps = 33/188 (17%)

Query: 5   GLKIQHKFSRSFPTSTGALSSLESLHLHRNHLSGAIPLSLQNGTHFEVLDLRENAFIRDV 64
            +K +    +   ++         +H+                 + +++  + +  +R +
Sbjct: 2   NVKPRQPEYKCIDSNLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNS-TMRKL 60

Query: 65  PKWIKKSLLAL----------FMMKGKAFEYSTNLNVLRVIELSKNNFLGEIAKGV-TNP 113
           P  +  S   +            +   AF      + ++ + +   N +  +   V  N 
Sbjct: 61  PAALLDSFRQVELLNLNDLQIEEIDTYAFA---YAHTIQKLYMG-FNAIRYLPPHVFQNV 116

Query: 114 GASQTLNLSQNSFSRTIPESIGSMKSLESIDFSANH----------------YLNLSNNN 157
                L L +N  S        +   L ++  S N+                 L LS+N 
Sbjct: 117 PLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNR 176

Query: 158 LTGEIPSG 165
           LT  +   
Sbjct: 177 LT-HVDLS 183

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 50.4 bits (121), Expect = 5e-08
 Identities = 28/176 (15%), Positives = 57/176 (32%), Gaps = 12/176 (6%)

Query: 19  STGALSSLESLHLHRNHLSGAIPLSLQNGTHFEVLDLRENAFIRDVPKWIKKSL-----L 73
           S       ++++L  N ++    L     +  + LDL+ N         +  S      L
Sbjct: 115 SCSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHL 174

Query: 74  ALFMMKGKAFEYSTNLNVLRVIELSKNNFLGEIAKGVTNPGASQTLNLSQNSFSRTIPES 133
            L        +       L+ ++LS +N L  +     +      ++L  N     I ++
Sbjct: 175 NLQYNFIYDVKGQVVFAKLKTLDLS-SNKLAFMGPEFQSAAGVTWISLRNNKLV-LIEKA 232

Query: 134 IGSMKSLESIDFSANHYLNLSNNNLTGEIPSGIQLQGFHQSRFAGSELCGAPFPKC 189
           +   ++LE  D   N         L        ++Q   +      +L G    +C
Sbjct: 233 LRFSQNLEHFDLRGN---GFHCGTLRDFFSKNQRVQTVAKQTV--KKLTGQNEEEC 283

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 43.1 bits (102), Expect = 2e-05
 Identities = 26/164 (15%), Positives = 54/164 (32%), Gaps = 39/164 (23%)

Query: 15  SFPTSTGALSSLESLHLHRNHLSGAIPLSLQNGTHFEVLDLRENAFIRDVPKWIKKSLLA 74
           +        +  +   +  + L  A+    Q+  + + LDL  N  +  +          
Sbjct: 1   AIHEIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNP-LSQIS--------- 50

Query: 75  LFMMKGKAFEYSTNLNVLRVIELSKNNFLGEIAKGVTNPGASQTLNLSQNSFSRTIPESI 134
                       T L +L    LS +N L E    + +    +TL+L+ N         +
Sbjct: 51  -----AADLAPFTKLELLN---LS-SNVLYETL-DLESLSTLRTLDLNNNYVQ-----EL 95

Query: 135 GSMKSLESIDFSANH-------------YLNLSNNNLTGEIPSG 165
               S+E++  + N+              + L+NN +T  +   
Sbjct: 96  LVGPSIETLHAANNNISRVSCSRGQGKKNIYLANNKIT-MLRDL 138

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 38.4 bits (90), Expect = 7e-04
 Identities = 22/139 (15%), Positives = 45/139 (32%), Gaps = 23/139 (16%)

Query: 15  SFPTSTGALSSLESLHLHRNHLSGAIPLSLQNGTHFEVLDLRENAFIRDVPKWIKKSLLA 74
           +F     +  +LE L+L  N +   +   +      + LDL  N  +  +    +     
Sbjct: 160 NFAELAASSDTLEHLNLQYNFIY-DVKGQVVF-AKLKTLDLSSNK-LAFMGPEFQ----- 211

Query: 75  LFMMKGKAFEYSTNLNVLRVIELSKNNFLGEIAKGVTNPGASQTLNLSQNSFSR-TIPES 133
                        +   +  I L  NN L  I K +      +  +L  N F   T+ + 
Sbjct: 212 -------------SAAGVTWISLR-NNKLVLIEKALRFSQNLEHFDLRGNGFHCGTLRDF 257

Query: 134 IGSMKSLESIDFSANHYLN 152
               + ++++       L 
Sbjct: 258 FSKNQRVQTVAKQTVKKLT 276

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 50.1 bits (120), Expect = 8e-08
 Identities = 40/161 (24%), Positives = 59/161 (36%), Gaps = 38/161 (23%)

Query: 23  LSSLESLHLHRNHLSGAIPLSLQNG-THFEVLDLRENAFIRDVPKWIKKSLLALFMMKGK 81
           LS L+ L L  N +  +IP    N       LDL E   +  +                 
Sbjct: 135 LSKLKELWLRNNPIE-SIPSYAFNRIPSLRRLDLGELKRLSYIS--------------EG 179

Query: 82  AFEYSTNLNVLRVIELSKNNFLGEIAKGVTNPGASQTLNLSQNSFSRTIPESIGSMKSLE 141
           AFE    L+ LR + L+  N L EI   +T       L+LS N  S   P S   +  L+
Sbjct: 180 AFE---GLSNLRYLNLAMCN-LREIP-NLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQ 234

Query: 142 SIDFSANH----------------YLNLSNNNLTGEIPSGI 166
            +    +                  +NL++NNLT  +P  +
Sbjct: 235 KLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLT-LLPHDL 274

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 45.5 bits (108), Expect = 3e-06
 Identities = 38/159 (23%), Positives = 52/159 (32%), Gaps = 38/159 (23%)

Query: 24  SSLESLHLHRNHLSGAIPLSLQNGTHFEVLDLRENAFIRDVPKWIKKSLLALFMMKGKAF 83
           ++   L+LH N +      S ++  H E+L L  N  IR +                 AF
Sbjct: 64  TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNH-IRTIE--------------IGAF 108

Query: 84  EYSTNLNVLRVIELSKNNFLGEIAKGV-TNPGASQTLNLSQNSFSRTIPESIGSMKSLES 142
               NLN L    L  N  L  I  G        + L L  N        +   + SL  
Sbjct: 109 NGLANLNTLE---LFDNR-LTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRR 164

Query: 143 IDFSAN-----------------HYLNLSNNNLTGEIPS 164
           +D                      YLNL+  NL  EIP+
Sbjct: 165 LDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLR-EIPN 202

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 44.7 bits (106), Expect = 5e-06
 Identities = 34/155 (21%), Positives = 57/155 (36%), Gaps = 26/155 (16%)

Query: 23  LSSLESLHLHRNHLSGAIPLSLQNGTHFEVLDLRENAFIRDVPKWIKKSLLAL------- 75
           L  LE L L RNH+      +     +   L+L +N  +  +P      L  L       
Sbjct: 87  LRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNR-LTTIPNGAFVYLSKLKELWLRN 145

Query: 76  ---FMMKGKAFEYSTNLNVLRVIELSKNNFLGEIAKGV-TNPGASQTLNLSQNSFSRTIP 131
                +   AF     +  LR ++L +   L  I++G        + LNL+  +      
Sbjct: 146 NPIESIPSYAFN---RIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLR---- 198

Query: 132 ESIGSMKSLESIDFSANHYLNLSNNNLTGEIPSGI 166
             I ++  L  +       L+LS N+L+  I  G 
Sbjct: 199 -EIPNLTPLIKL-----DELDLSGNHLS-AIRPGS 226

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 43.2 bits (102), Expect = 2e-05
 Identities = 26/128 (20%), Positives = 48/128 (37%), Gaps = 24/128 (18%)

Query: 23  LSSLESLHLHRNHLSGAIPLSLQNGTHFEVLDLRENAFIRDVPKWIKKSLLALFMMKGKA 82
           LS+L  L+L   +L   IP +L      + LDL  N  +  +                 +
Sbjct: 184 LSNLRYLNLAMCNLR-EIP-NLTPLIKLDELDLSGNH-LSAIRPG--------------S 226

Query: 83  FEYSTNLNVLRVIELSKNNFLGEIAKGV-TNPGASQTLNLSQNSFSRTIPESI-GSMKSL 140
           F     L  L+ + +   + +  I +    N  +   +NL+ N+ +  +P  +   +  L
Sbjct: 227 F---QGLMHLQKLWMI-QSQIQVIERNAFDNLQSLVEINLAHNNLT-LLPHDLFTPLHHL 281

Query: 141 ESIDFSAN 148
           E I    N
Sbjct: 282 ERIHLHHN 289

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 50.0 bits (120), Expect = 8e-08
 Identities = 30/164 (18%), Positives = 50/164 (30%), Gaps = 37/164 (22%)

Query: 20  TGALSSLESLHLHRNHLSGAIPLSLQNGTHFEVLDLRENAFIRDVPKWIKKSLLALFMMK 79
               SSL  L +H N +            +   +++  N              L     +
Sbjct: 119 PNLPSSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNP-------------LENSGFE 165

Query: 80  GKAFEYSTNLNVLRVIELSKNNFLGEIAKGVTNPGASQTLNLSQNSFSRTIPESIGSMKS 139
             AF+    L  L  + +S+   L  I K +  P     L+L  N       E +     
Sbjct: 166 PGAFD---GLK-LNYLRISEAK-LTGIPKDL--PETLNELHLDHNKIQAIELEDLLRYSK 218

Query: 140 LESIDFSAN----------------HYLNLSNNNLTGEIPSGIQ 167
           L  +    N                  L+L NN L+  +P+G+ 
Sbjct: 219 LYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLS-RVPAGLP 261

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 46.9 bits (112), Expect = 9e-07
 Identities = 26/149 (17%), Positives = 45/149 (30%), Gaps = 24/149 (16%)

Query: 19  STGALSSLESLHLHRNHLSGAIPLSLQNGTHFEVLDLRENAFIRDVPKWIKKSLLALFMM 78
                 +L  LHL  N +       L   +    L L  N  IR +              
Sbjct: 188 PKDLPETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQ-IRMIEN------------ 234

Query: 79  KGKAFEYSTNLNVLRVIELSKNNFLGEIAKGVTNPGASQTLNLSQNSFSRTIPESIGSMK 138
              +      L  LR + L  N  L  +  G+ +    Q + L  N+ +  +        
Sbjct: 235 --GSLS---FLPTLRELHLDNNK-LSRVPAGLPDLKLLQVVYLHTNNIT-KVGV--NDFC 285

Query: 139 SLESIDFSAN-HYLNLSNNNLT-GEIPSG 165
            +      A  + ++L NN +   E+   
Sbjct: 286 PVGFGVKRAYYNGISLFNNPVPYWEVQPA 314

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 43.1 bits (102), Expect = 2e-05
 Identities = 32/160 (20%), Positives = 49/160 (30%), Gaps = 39/160 (24%)

Query: 24  SSLESLHLHRNHLSGAIPLSLQNGTHFEVLDLRENAFIRDVPKWIKKSLLALFMMKGKAF 83
                L L  N +S       +   H   L L  N  I  + +              KAF
Sbjct: 54  PDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNK-ISKIHE--------------KAF 98

Query: 84  EYSTNLNVLRVIELSKNNFLGEIAKGVTNPGASQTLNLSQNSFSRTIPESIGSMKSLESI 143
                L  L    +SKN+ L EI   +  P +   L +  N   +        ++++  I
Sbjct: 99  SPLRKLQKLY---ISKNH-LVEIPPNL--PSSLVELRIHDNRIRKVPKGVFSGLRNMNCI 152

Query: 144 DFSANH-----------------YLNLSNNNLTGEIPSGI 166
           +   N                  YL +S   LT  IP  +
Sbjct: 153 EMGGNPLENSGFEPGAFDGLKLNYLRISEAKLT-GIPKDL 191

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 49.4 bits (118), Expect = 1e-07
 Identities = 33/160 (20%), Positives = 55/160 (34%), Gaps = 36/160 (22%)

Query: 23  LSSLESLHLHRNHLSGAIPLSLQNGTHFEVLDLRENAFIRDVPKWIKKSLLALFMMKGKA 82
           LS L  L L  N +      +         LDL E   +  + +               A
Sbjct: 146 LSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISE--------------GA 191

Query: 83  FEYSTNLNVLRVIELSKNNFLGEIAKGVTNPGASQTLNLSQNSFSRTIPESIGSMKSLES 142
           FE    L  L+ + L   N + ++   +T     + L +S N F    P S   + SL+ 
Sbjct: 192 FE---GLFNLKYLNLGMCN-IKDMPN-LTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKK 246

Query: 143 IDFSANH----------------YLNLSNNNLTGEIPSGI 166
           +    +                  LNL++NNL+  +P  +
Sbjct: 247 LWVMNSQVSLIERNAFDGLASLVELNLAHNNLS-SLPHDL 285

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 43.6 bits (103), Expect = 1e-05
 Identities = 34/159 (21%), Positives = 52/159 (32%), Gaps = 38/159 (23%)

Query: 24  SSLESLHLHRNHLSGAIPLSLQNGTHFEVLDLRENAFIRDVPKWIKKSLLALFMMKGKAF 83
           S+   L+L  N++      + ++  H EVL L  N+ IR +                 AF
Sbjct: 75  SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNS-IRQIE--------------VGAF 119

Query: 84  EYSTNLNVLRVIELSKNNFLGEIAKGV-TNPGASQTLNLSQNSFSRTIPESIGSMKSLES 142
               +LN L    L  N  L  I  G        + L L  N        +   + SL  
Sbjct: 120 NGLASLNTLE---LFDNW-LTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMR 175

Query: 143 IDFSAN-----------------HYLNLSNNNLTGEIPS 164
           +D                      YLNL   N+  ++P+
Sbjct: 176 LDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIK-DMPN 213

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 42.8 bits (101), Expect = 2e-05
 Identities = 22/128 (17%), Positives = 50/128 (39%), Gaps = 24/128 (18%)

Query: 23  LSSLESLHLHRNHLSGAIPLSLQNGTHFEVLDLRENAFIRDVPKWIKKSLLALFMMKGKA 82
           L +L+ L+L   ++   +P +L      E L++  N    ++                 +
Sbjct: 195 LFNLKYLNLGMCNIK-DMP-NLTPLVGLEELEMSGNH-FPEIRP--------------GS 237

Query: 83  FEYSTNLNVLRVIELSKNNFLGEIAKGV-TNPGASQTLNLSQNSFSRTIPESI-GSMKSL 140
           F     L+ L+ + +  N+ +  I +       +   LNL+ N+ S ++P  +   ++ L
Sbjct: 238 F---HGLSSLKKLWVM-NSQVSLIERNAFDGLASLVELNLAHNNLS-SLPHDLFTPLRYL 292

Query: 141 ESIDFSAN 148
             +    N
Sbjct: 293 VELHLHHN 300

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 49.4 bits (118), Expect = 2e-07
 Identities = 26/157 (16%), Positives = 50/157 (31%), Gaps = 38/157 (24%)

Query: 23  LSSLESLHLHRNHLSGAIPLSLQNGTHFEVLDLRENAFIRDVPKWIKKSLLALFMMKGKA 82
           L++ E L L  N++      S       ++L+L        + K              +A
Sbjct: 23  LNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDK--------------EA 68

Query: 83  FEYSTNLNVLRVIELSKNNFLGEIAKGV-TNPGASQTLNLSQNSFSRTI--PESIGSMKS 139
           F    NL  LR+++L  +  +  +             L L     S  +       ++K+
Sbjct: 69  FR---NLPNLRILDLGSSK-IYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKA 124

Query: 140 LESIDFSANH-----------------YLNLSNNNLT 159
           L  +D S N                   ++ S+N + 
Sbjct: 125 LTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIF 161

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 48.3 bits (115), Expect = 5e-07
 Identities = 33/153 (21%), Positives = 55/153 (35%), Gaps = 13/153 (8%)

Query: 23  LSSLESLHLHRNHLSGAIPLSLQNGTHFEVLDLRENAFIRDVPKWIKKSLLALFMMKGKA 82
           L  +  + L +NH++     + +     + LDLR+NA +  +      S+  +F+   K 
Sbjct: 337 LPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNA-LTTIHFI--PSIPDIFLSGNKL 393

Query: 83  FEYSTNLNVLRVIELSKNNFLG-EIAKGVTNPGASQTLNLSQNSFSRTIPESI-GSMKSL 140
                      +I LS+N     +I   +      Q L L+QN FS    +       SL
Sbjct: 394 VTLPKINLTANLIHLSENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQTPSENPSL 453

Query: 141 ESIDFSANHYLNLSNNNLTGEIPSGIQLQGFHQ 173
           E         L L  N L     + +    F  
Sbjct: 454 E--------QLFLGENMLQLAWETELCWDVFEG 478

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 48.3 bits (115), Expect = 5e-07
 Identities = 35/181 (19%), Positives = 57/181 (31%), Gaps = 31/181 (17%)

Query: 22  ALSSLESLHLHRNHLSGAIPLSLQNGTHFEVLDLRENAFIRDVPKWIKKSLLALFMMKGK 81
           A SS+  L L    +        +     +VL+L  N  I  +                +
Sbjct: 264 ARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNK-INKIA--------------DE 308

Query: 82  AFEYSTNLNVLRVIELSKNNFLGEIAKGVTNPGAS-QTLNLSQNSFSRTIPESIGSMKSL 140
           AF    NL VL    LS  N LGE+             ++L +N  +    ++   ++ L
Sbjct: 309 AFYGLDNLQVLN---LS-YNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKL 364

Query: 141 ESIDFSAN-----------HYLNLSNNNLTGEIPSGIQLQGFHQSRFAGSELCGAPFPKC 189
           +++D   N             + LS N L       +     H S      L    F   
Sbjct: 365 QTLDLRDNALTTIHFIPSIPDIFLSGNKLVTLPKINLTANLIHLSENRLENLDILYFLLR 424

Query: 190 L 190
           +
Sbjct: 425 V 425

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 45.6 bits (108), Expect = 4e-06
 Identities = 26/172 (15%), Positives = 47/172 (27%), Gaps = 21/172 (12%)

Query: 15  SFPTSTGALSSLESLHLHRNHLSGAIPLSLQN--GTHFEVLDLRENAFIRDVPKWIKKSL 72
               S G L+SL+S+    N +       L+   G       L  N+    V     K +
Sbjct: 139 YLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCM 198

Query: 73  LALFMMKGKAFEYSTNLNVLRVIELSKNNFLGEIAKGVTNPGASQTLNLSQNSFSRTIPE 132
                M  +  + S N   + +     N      A  +             ++       
Sbjct: 199 NPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQN 258

Query: 133 SIGSMK--SLESIDFSANH----------------YLNLSNNNLTGEIPSGI 166
           +   +   S+  +D S                    LNL+ N +  +I    
Sbjct: 259 TFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKIN-KIADEA 309

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 42.5 bits (100), Expect = 3e-05
 Identities = 25/180 (13%), Positives = 55/180 (30%), Gaps = 44/180 (24%)

Query: 23  LSSLESLHLHRNHLSGAIPLSLQN------GTHFEVLDLRENAFIRDVPKWIKKSLLALF 76
             +L    L  N L   + +              E+LD+  N +  D+      ++    
Sbjct: 173 GKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQ 232

Query: 77  MMKGKAFEYSTNLNV--------------------LRVIELSKNNFLGEIAKGV-TNPGA 115
                   +                          +R ++LS + F+  +   V      
Sbjct: 233 AFSLILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLS-HGFVFSLNSRVFETLKD 291

Query: 116 SQTLNLSQNSFSRTIPESIGSMKSLESIDFSANH----------------YLNLSNNNLT 159
            + LNL+ N  ++   E+   + +L+ ++ S N                 Y++L  N++ 
Sbjct: 292 LKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIA 351

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 41.3 bits (97), Expect = 1e-04
 Identities = 27/202 (13%), Positives = 60/202 (29%), Gaps = 53/202 (26%)

Query: 6   LKIQH-KFSRSFPTSTGALSSLESLHLHRNHLSGAIPLSLQNGTHFEVLDLRENAFIRDV 64
           + +Q    +     +   L  L++L L  N L+     ++        + L  N  +   
Sbjct: 343 IDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALT-----TIHFIPSIPDIFLSGNKLVTLP 397

Query: 65  PKWIKKSLLALFMMKGKAFEYS---TNLNVLRVIELSKN--------------------- 100
              +  +L+ L   + +  +       +  L+++ L++N                     
Sbjct: 398 KINLTANLIHLSENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQLF 457

Query: 101 ---NFLGEIAKGVTNPGAS------QTLNLSQNSFSRTIPESIGSMKSLESIDFSANH-- 149
              N L    +              Q L L+ N  +   P     + +L  +  ++N   
Sbjct: 458 LGENMLQLAWETELCWDVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLT 517

Query: 150 ------------YLNLSNNNLT 159
                        L++S N L 
Sbjct: 518 VLSHNDLPANLEILDISRNQLL 539

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 40.2 bits (94), Expect = 2e-04
 Identities = 37/199 (18%), Positives = 58/199 (29%), Gaps = 48/199 (24%)

Query: 4   QGLKIQHKFSRSFPTSTGALS--SLESLHLHRNHLSGAIP------------LSLQNGTH 49
               +  + S  +           LE L +  N  +  I              SL    H
Sbjct: 182 AANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHH 241

Query: 50  FEVLDLRENAFIRDVPKWIKKSLL------------ALFMMKGKAFEYSTNLNVLRVIEL 97
                   +  I+D  +     L              +F +  + FE   +L VL    L
Sbjct: 242 IMGAGFGFH-NIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLN---L 297

Query: 98  SKNNFLGEIAKGVTNPGAS-QTLNLSQNSFSRTIPESIGSMKSLESIDFSANH------- 149
           +  N + +IA        + Q LNLS N        +   +  +  ID   NH       
Sbjct: 298 A-YNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQ 356

Query: 150 ---------YLNLSNNNLT 159
                     L+L +N LT
Sbjct: 357 TFKFLEKLQTLDLRDNALT 375

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 48.7 bits (116), Expect = 2e-07
 Identities = 27/149 (18%), Positives = 53/149 (35%), Gaps = 29/149 (19%)

Query: 19  STGALSSLESLHLHRNHLSGAIPLSLQNGTHFEVLDLRENAFIRDVPKWIKKSLLALFMM 78
           S       ++++L  N ++    L     +  + LDL+ N  I  V              
Sbjct: 115 SCSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLN-EIDTVNF------------ 161

Query: 79  KGKAFEYSTNLNVLRVIELSKNNFLGEIAKGVTNPGASQTLNLSQNSFSRTIPESIGSMK 138
                E + + + L  + L   NF+ ++   V      +TL+LS N  +  +     S  
Sbjct: 162 ----AELAASSDTLEHLNLQ-YNFIYDVKGQVVFAKL-KTLDLSSNKLA-FMGPEFQSAA 214

Query: 139 SLESIDFSANHYLNLSNNNLTGEIPSGIQ 167
            +         +++L NN L   I   ++
Sbjct: 215 GVT--------WISLRNNKLV-LIEKALR 234

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 47.5 bits (113), Expect = 6e-07
 Identities = 24/170 (14%), Positives = 53/170 (31%), Gaps = 22/170 (12%)

Query: 17  PTSTGALSSLESLHLHRNHLSGAIPLSLQNGTHFEVLDLRENAFIRDVPKWIKKSLLALF 76
            +   +  +++ L L  N LS      L   T  E+L+L  N  + +       S L   
Sbjct: 27  ASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNV-LYETLDLESLSTLRTL 85

Query: 77  MMKGKAFEYSTNLNVLRVIELSKNNFLGEIAKGVTNPGASQTLNLSQNSFSRTIPESIGS 136
            +     +       +  +  + NN +  ++         + + L+ N  +       G 
Sbjct: 86  DLNNNYVQELLVGPSIETLHAANNN-ISRVSCSRGQ--GKKNIYLANNKITMLRDLDEGC 142

Query: 137 MKSLESIDFSAN-----------------HYLNLSNNNLTGEIPSGIQLQ 169
              ++ +D   N                  +LNL  N +  ++   +   
Sbjct: 143 RSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIY-DVKGQVVFA 191

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 44.5 bits (105), Expect = 8e-06
 Identities = 19/100 (19%), Positives = 41/100 (41%), Gaps = 15/100 (15%)

Query: 84  EYSTNLNVLRVIELSKNNFLGEIAKGVTNPGASQTLNLSQNSFSRTIPESIGSMKSLESI 143
           E   N N  ++ +++ ++    +A    +    + L+LS N  S+     +     LE +
Sbjct: 4   EIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELL 63

Query: 144 DFSANH--------------YLNLSNNNLTGEIPSGIQLQ 169
           + S+N                L+L+NN +  E+  G  ++
Sbjct: 64  NLSSNVLYETLDLESLSTLRTLDLNNNYVQ-ELLVGPSIE 102

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 48.1 bits (115), Expect = 3e-07
 Identities = 32/161 (19%), Positives = 49/161 (30%), Gaps = 38/161 (23%)

Query: 23  LSSLESLHLHRNHLSGAIPLSLQNGTHFEVLDLRENAFIRDVPKWIKKSLLALFMMKGKA 82
             +L  L LH N L+     +       E LDL +NA +R V                  
Sbjct: 55  CRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDP--------------AT 100

Query: 83  FEYSTNLNVLRVIELSKNNFLGEIAKGV-TNPGASQTLNLSQNSFSRTIPESI-GSMKSL 140
           F     L+ L    L +   L E+  G+     A Q L L  N+    +P+     + +L
Sbjct: 101 FHGLGRLHTLH---LDRCG-LQELGPGLFRGLAALQYLYLQDNALQ-ALPDDTFRDLGNL 155

Query: 141 ESIDFSANH----------------YLNLSNNNLTGEIPSG 165
             +    N                  L L  N +   +   
Sbjct: 156 THLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVA-HVHPH 195

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 47.3 bits (113), Expect = 6e-07
 Identities = 28/145 (19%), Positives = 51/145 (35%), Gaps = 30/145 (20%)

Query: 24  SSLESLHLHRNHLSGAIPLSLQNGTHFEVLDLRENAFIRDVPKWIKKSLLALFMMKGKAF 83
           ++ + + LH N +S     S +   +  +L L  N  +  +                 AF
Sbjct: 32  AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNV-LARIDA--------------AAF 76

Query: 84  EYSTNLNVLRVIELSKNNFLGEIAKGV-TNPGASQTLNLSQNSFSRTIPESI-GSMKSLE 141
              T L +L  ++LS N  L  +        G   TL+L +      +   +   + +L+
Sbjct: 77  ---TGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQ-ELGPGLFRGLAALQ 132

Query: 142 SIDFSANHYLNLSNNNLTGEIPSGI 166
                   YL L +N L   +P   
Sbjct: 133 --------YLYLQDNALQ-ALPDDT 148

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 41.5 bits (98), Expect = 5e-05
 Identities = 27/128 (21%), Positives = 50/128 (39%), Gaps = 22/128 (17%)

Query: 23  LSSLESLHLHRNHLSGAIPLSLQNGTHFEVLDLRENAFIRDVPKWIKKSLLALFMMKGKA 82
           L++L+ L+L  N L      + ++  +   L L  N  I  VP+              +A
Sbjct: 128 LAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNR-ISSVPE--------------RA 172

Query: 83  FEYSTNLNVLRVIELSKNNFLGEIAKGV-TNPGASQTLNLSQNSFSRTIPESI-GSMKSL 140
           F     L+ L  + L   N +  +      + G   TL L  N+ S  +P      +++L
Sbjct: 173 F---RGLHSLDRLLLH-QNRVAHVHPHAFRDLGRLMTLYLFANNLS-ALPTEALAPLRAL 227

Query: 141 ESIDFSAN 148
           + +  + N
Sbjct: 228 QYLRLNDN 235

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 48.4 bits (115), Expect = 4e-07
 Identities = 27/151 (17%), Positives = 51/151 (33%), Gaps = 40/151 (26%)

Query: 23  LSSLESLHLHRNHLSGAIPLSLQNGTHFEVLDLRENAFIRDVPKWIKKSLLALFMMKGKA 82
            + LE ++   N L+  +P    +    EVL +R N  +  +P+  +             
Sbjct: 139 PALLEYINADNNQLT-MLPELPTS---LEVLSVRNNQ-LTFLPELPES------------ 181

Query: 83  FEYSTNLNVLRVIELSKNNFLGEIAKGVTNPGASQT----LNLSQNSFSRTIPESIGSMK 138
                    L  +++S  N L  +         S+         +N     IPE+I S+ 
Sbjct: 182 ---------LEALDVS-TNLLESLPAVPVRNHHSEETEIFFRCRENRI-THIPENILSLD 230

Query: 139 SLESIDFSANHYLNLSNNNLTGEIPSGIQLQ 169
              +        + L +N L+  I   +  Q
Sbjct: 231 PTCT--------IILEDNPLSSRIRESLSQQ 253

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 46.5 bits (110), Expect = 2e-06
 Identities = 31/157 (19%), Positives = 59/157 (37%), Gaps = 46/157 (29%)

Query: 23  LSSLESLHLHRNHLSGAIPLSLQNGTHFEVLDLRENAFIRDVPKWIKKSLLALFMMKGKA 82
           ++    L L+R +LS ++P +L       VL++ +NA +  +P+                
Sbjct: 58  INQFSELQLNRLNLS-SLPDNL--PPQITVLEITQNA-LISLPELP-------------- 99

Query: 83  FEYSTNLNVLRVIELSKNNFLGEIAKGVTNPGASQTLNLSQNSFSRTIPESIGSMKSLES 142
                +L  L       +N L  + +    P + + L++  N  +  +PE       LE 
Sbjct: 100 ----ASLEYLDA----CDNRLSTLPE---LPASLKHLDVDNNQLT-MLPELPA---LLEY 144

Query: 143 IDFSANH------------YLNLSNNNLTGEIPSGIQ 167
           I+   N              L++ NN LT  +P   +
Sbjct: 145 INADNNQLTMLPELPTSLEVLSVRNNQLT-FLPELPE 180

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 46.9 bits (112), Expect = 1e-06
 Identities = 30/163 (18%), Positives = 52/163 (31%), Gaps = 24/163 (14%)

Query: 23  LSSLESLHLHRNHLSGAIPLSLQNGTHFEVLDLRENAFIRDVPKWIKKSLLALFMMKG-- 80
           L++L  L L  N +S   PLS    T    L L  N  I ++      + L    +    
Sbjct: 242 LTNLTDLDLANNQISNLAPLS--GLTKLTELKLGANQ-ISNISPLAGLTALTNLELNENQ 298

Query: 81  -KAFEYSTNLNVLRVIELSKNNFLGEIAKGVTNPGASQTLNLSQNSFSRTIPESIGSMKS 139
            +     +NL  L  + L  NN        V++    Q L    N    +   S+ ++ +
Sbjct: 299 LEDISPISNLKNLTYLTLYFNNISDIS--PVSSLTKLQRLFFYNNKV--SDVSSLANLTN 354

Query: 140 LESIDFSANH--------------YLNLSNNNLTGEIPSGIQL 168
           +  +    N                L L++   T    +    
Sbjct: 355 INWLSAGHNQISDLTPLANLTRITQLGLNDQAWTNAPVNYKAN 397

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 45.7 bits (109), Expect = 3e-06
 Identities = 34/159 (21%), Positives = 60/159 (37%), Gaps = 23/159 (14%)

Query: 21  GALSSLESLHLHRNHLSGAIPLSLQNGTHFEVLDLRENAFIRDVPKWIK-KSLLALFM-M 78
             L++L  L L  N ++   PL   N T+   L+L  N  I D+       SL  L    
Sbjct: 109 ANLTNLTGLTLFNNQITDIDPLK--NLTNLNRLELSSNT-ISDISALSGLTSLQQLSFGN 165

Query: 79  KGKAFEYSTNLNVLRVIELSKNNFLGEIAKGVTNPGASQTLNLSQNSFSRTIPESIGSMK 138
           +    +   NL  L  +++S N         +      ++L  + N  S   P  +G + 
Sbjct: 166 QVTDLKPLANLTTLERLDISSNKV--SDISVLAKLTNLESLIATNNQISDITP--LGILT 221

Query: 139 SLESIDFSANH--------------YLNLSNNNLTGEIP 163
           +L+ +  + N                L+L+NN ++   P
Sbjct: 222 NLDELSLNGNQLKDIGTLASLTNLTDLDLANNQISNLAP 260

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 41.9 bits (99), Expect = 5e-05
 Identities = 31/157 (19%), Positives = 54/157 (34%), Gaps = 40/157 (25%)

Query: 21  GALSSLESLHLHRNHLSGAIPLSLQNGTHFEVLDLRENAFIRDVPKWIKKSLLALFMMKG 80
             L++LESL    N +S   PL     T+ + L L  N  ++D+                
Sbjct: 196 AKLTNLESLIATNNQISDITPLG--ILTNLDELSLNGNQ-LKDIG--------------- 237

Query: 81  KAFEYSTNLNVLRVIELSKNNFLGEIAKGVTNPGASQTLNLSQNSFSRTIPESIGSMKSL 140
                  +L  L  ++L+ N         ++       L L  N  S   P  +  + +L
Sbjct: 238 -TLA---SLTNLTDLDLANNQISNLA--PLSGLTKLTELKLGANQISNISP--LAGLTAL 289

Query: 141 ESIDFSANH--------------YLNLSNNNLTGEIP 163
            +++ + N               YL L  NN++   P
Sbjct: 290 TNLELNENQLEDISPISNLKNLTYLTLYFNNISDISP 326

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 46.5 bits (110), Expect = 2e-06
 Identities = 28/171 (16%), Positives = 67/171 (39%), Gaps = 30/171 (17%)

Query: 23  LSSLESLHLHRNHLSGAIPLSLQNGTHFEVLDLRENAFIRDVPKWIKKSLLALF------ 76
           L++ + +    + +       L +    E+L+L +   I ++  +       +       
Sbjct: 50  LNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQ-IEEIDTYAFAYAHTIQKLYMGF 108

Query: 77  ----MMKGKAFEYSTNLNVLRVIELSKNNFLGEIAKGVTNPGAS-QTLNLSQNSFSRTIP 131
                +    F+   N+ +L V+ L   N L  + +G+ +      TL++S N+  R   
Sbjct: 109 NAIRYLPPHVFQ---NVPLLTVLVLE-RNDLSSLPRGIFHNTPKLTTLSMSNNNLERIED 164

Query: 132 ESIGSMKSLESIDFSAN-------------HYLNLSNNNLTGEIPSGIQLQ 169
           ++  +  SL+++  S+N              + N+S N L+  +   I ++
Sbjct: 165 DTFQATTSLQNLQLSSNRLTHVDLSLIPSLFHANVSYNLLS-TLAIPIAVE 214

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 43.0 bits (101), Expect = 3e-05
 Identities = 29/179 (16%), Positives = 56/179 (31%), Gaps = 39/179 (21%)

Query: 23  LSSLESLHLHRNHLSGAIPLSLQNGTHFEVLDLRENAFIRDVPKWIKKSLLALFMMKGKA 82
              L +L +  N+L      + Q  T  + L L  N  +  V   +  SL    +     
Sbjct: 146 TPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNR-LTHVDLSLIPSLFHANVSYNLL 204

Query: 83  FEYSTNLNVLRVIELSKNNFLGEIAKGV--------------TNPGAS------QTLNLS 122
              +  +  +  ++ S +N +  +   V              T+            ++LS
Sbjct: 205 STLAIPIA-VEELDAS-HNSINVVRGPVNVELTILKLQHNNLTDTAWLLNYPGLVEVDLS 262

Query: 123 QNSFSRTIPESIGSMKSLESIDFSANH---------------YLNLSNNNLTGEIPSGI 166
            N   + +      M+ LE +  S N                 L+LS+N+L   +    
Sbjct: 263 YNELEKIMYHPFVKMQRLERLYISNNRLVALNLYGQPIPTLKVLDLSHNHLL-HVERNQ 320

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 42.2 bits (99), Expect = 4e-05
 Identities = 27/154 (17%), Positives = 44/154 (28%), Gaps = 35/154 (22%)

Query: 19  STGALSSLESLHLHRNHLSGAIPLSLQNGTHFEVLDLRENAFIRDVPKWIKKSLLALFMM 78
                  L  L L  N+L+      L N      +DL  N  +  +              
Sbjct: 227 RGPVNVELTILKLQHNNLT-DTA-WLLNYPGLVEVDLSYNE-LEKIMY------------ 271

Query: 79  KGKAFEYSTNLNVLRVIELSKNNFLGEIAKGVTNPGASQTLNLSQNSFSRTIPESIGSMK 138
               F     +  L  + +S NN L  +          + L+LS N     +  +     
Sbjct: 272 --HPFV---KMQRLERLYIS-NNRLVALNLYGQPIPTLKVLDLSHNHL-LHVERNQPQFD 324

Query: 139 SLESIDFSANH-------------YLNLSNNNLT 159
            LE++    N               L LS+N+  
Sbjct: 325 RLENLYLDHNSIVTLKLSTHHTLKNLTLSHNDWD 358

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 39.5 bits (92), Expect = 4e-04
 Identities = 25/165 (15%), Positives = 48/165 (29%), Gaps = 42/165 (25%)

Query: 18  TSTGALSSLESLHLHRNHLSGAIPLSLQNGTHFEVLDLRENAFIRDVPKWIKKSLLALFM 77
           ++     ++E L    N ++              +L L+ N  + D              
Sbjct: 205 STLAIPIAVEELDASHNSINVVRGPVNVE---LTILKLQHNN-LTDTA------------ 248

Query: 78  MKGKAFEYSTNLNVLRVIELSKNNFLGEIAKGV-TNPGASQTLNLSQNSFSRTIPESIGS 136
                     N   L  ++LS N  L +I           + L +S N     +      
Sbjct: 249 ----WL---LNYPGLVEVDLSYNE-LEKIMYHPFVKMQRLERLYISNNRLV-ALNLYGQP 299

Query: 137 MKSLESIDFSANH---------------YLNLSNNNLTGEIPSGI 166
           + +L+ +D S NH                L L +N++   +    
Sbjct: 300 IPTLKVLDLSHNHLLHVERNQPQFDRLENLYLDHNSIV-TLKLST 343

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 45.2 bits (107), Expect = 4e-06
 Identities = 24/144 (16%), Positives = 48/144 (33%), Gaps = 25/144 (17%)

Query: 23  LSSLESLHLHRNHLSGAIPLSLQNGTHFEVLDLRENAFIRDVPKWIKKSLLALFMMKGKA 82
           L +L+ L +    +     +   +     +LD+++N  I  + +               +
Sbjct: 103 LPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIER--------------NS 148

Query: 83  FEYSTNLNVLRVIELSKNNFLGEIAKGVTNPGASQTLNLSQNSFSRTIPESIGSMKSLES 142
           F   +      ++ L+KN  + EI     N      LNLS N+    +P           
Sbjct: 149 FVGLSFE--SVILWLNKNG-IQEIHNSAFNGTQLDELNLSDNNNLEELPN--DVFHGASG 203

Query: 143 IDFSANHYLNLSNNNLTGEIPSGI 166
                   L++S   +   +PS  
Sbjct: 204 P-----VILDISRTRIH-SLPSYG 221

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 38.7 bits (90), Expect = 5e-04
 Identities = 25/167 (14%), Positives = 44/167 (26%), Gaps = 39/167 (23%)

Query: 20  TGALSSLESLHLHRNHLSGAIPLSLQNGTHFEVLDLRENAFIRDVPKWIKKSLLALFMMK 79
           +    +   L      L      +       E +++ +N  +  +               
Sbjct: 26  SDLPRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEA------------- 72

Query: 80  GKAFEYSTNLNVLRVIELSKNNFLGEIAKGV-TNPGASQTLNLSQNSFSRTIPESI-GSM 137
              F   +NL  L  I + K N L  I      N    Q L +S     + +P+      
Sbjct: 73  -DVF---SNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGI-KHLPDVHKIHS 127

Query: 138 KSLESIDFSAN------------------HYLNLSNNNLTGEIPSGI 166
                +D   N                    L L+ N +  EI +  
Sbjct: 128 LQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQ-EIHNSA 173

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 45.0 bits (107), Expect = 5e-06
 Identities = 29/183 (15%), Positives = 50/183 (27%), Gaps = 38/183 (20%)

Query: 14  RSFPTSTGALSSLESLHLHRNHLSGAIPLSLQNG-------------THFEVLDLRENAF 60
              P     + S    +   +      P                        L+L     
Sbjct: 24  TEMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLDRQAHELELNNLG- 82

Query: 61  IRDVPKWIK--KSLLALFMMKGKAFEYSTNLNVLRVIELSKNNFLGEIAKGVTNPGASQT 118
           +  +P+     +SL+A      +  E   +L  L V   +              P   + 
Sbjct: 83  LSSLPELPPHLESLVASCNSLTELPELPQSLKSLLVDNNNLKAL-------SDLPPLLEY 135

Query: 119 LNLSQNSFSRTIPESIGSMKSLESIDFSANH------------YLNLSNNNLTGEIPSGI 166
           L +S N     +PE + +   L+ ID   N             ++   NN L  E+P   
Sbjct: 136 LGVSNNQLE-KLPE-LQNSSFLKIIDVDNNSLKKLPDLPPSLEFIAAGNNQLE-ELPELQ 192

Query: 167 QLQ 169
            L 
Sbjct: 193 NLP 195

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 43.8 bits (104), Expect = 1e-05
 Identities = 33/164 (20%), Positives = 52/164 (31%), Gaps = 27/164 (16%)

Query: 15  SFPTSTGALSSLESLHLHRNHLSGAIPLSLQNGTHFEVLDLRENAFIRDVPKWIKKSLLA 74
                   L  L +++   N L   +P    +     V D      + D+P+   +SL  
Sbjct: 228 EELPELQNLPFLTTIYADNNLLK-TLPDLPPSLEALNVRDNY----LTDLPELP-QSLTF 281

Query: 75  LFMMKGKAFEYSTNLNVLRVIELSKNNFLGEIAKGVTNPGASQTLNLSQNSFSRTIPESI 134
           L + +      S     L  +  S N     I      P + + LN+S N     +P   
Sbjct: 282 LDVSENIFSGLSELPPNLYYLNASSNE----IRSLCDLPPSLEELNVSNNKLI-ELPALP 336

Query: 135 GSMKSLESIDFSANH------------YLNLSNNNLTGEIPSGI 166
                LE +  S NH             L++  N L  E P   
Sbjct: 337 P---RLERLIASFNHLAEVPELPQNLKQLHVEYNPLR-EFPDIP 376

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 39.2 bits (92), Expect = 4e-04
 Identities = 27/156 (17%), Positives = 50/156 (32%), Gaps = 39/156 (25%)

Query: 21  GALSSLESLHLHRNHLSGAIPLSLQNGTHFEVLDLRENAFIRDVPKWIKKSLLALFMMKG 80
             L  L +++   N L   +P    +    E +    N  + ++P+              
Sbjct: 192 QNLPFLTAIYADNNSLK-KLPDLPLS---LESIVAGNNI-LEELPEL------------- 233

Query: 81  KAFEYSTNLNVLRVIELSKNNFLGEIAKGVTNPGASQTLNLSQNSFSRTIPESIGSMKSL 140
                  NL  L  I    NN L  +     +    + LN+  N  +  +PE   S+  L
Sbjct: 234 ------QNLPFLTTIYAD-NNLLKTLPDLPPS---LEALNVRDNYLT-DLPELPQSLTFL 282

Query: 141 ESIDFSANH---------YLNLSNNNLTGEIPSGIQ 167
           +  +   +          YLN S+N +   +     
Sbjct: 283 DVSENIFSGLSELPPNLYYLNASSNEIR-SLCDLPP 317

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 43.5 bits (103), Expect = 1e-05
 Identities = 22/164 (13%), Positives = 45/164 (27%), Gaps = 40/164 (24%)

Query: 23  LSSLESLHLHRNHLSGAIPLSLQNGTHFEVLDLRENAFIRDVPKWIKKSLLALFMMKGKA 82
             S ++L L   HL      +  N  +   + +  +  ++ +                 +
Sbjct: 30  PPSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLES--------------HS 75

Query: 83  FEYSTNLNVLRVIELSKNNFLGEIAKGV-TNPGASQTLNLSQNSFSRTIPE--SIGSMKS 139
           F    NL+ +  IE+     L  I           + L +      +  P+   + S   
Sbjct: 76  F---YNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLGIFNTGL-KMFPDLTKVYSTDI 131

Query: 140 LESIDFSAN------------------HYLNLSNNNLTGEIPSG 165
              ++ + N                    L L NN  T  +   
Sbjct: 132 FFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFT-SVQGY 174

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 43.1 bits (102), Expect = 2e-05
 Identities = 24/146 (16%), Positives = 51/146 (34%), Gaps = 27/146 (18%)

Query: 23  LSSLESLHLHRNHLSGAIP--LSLQNGTHFEVLDLRENAFIRDVPKWIKKSLLALFMMKG 80
           L  L+ L +    L    P    + +   F +L++ +N ++  +P               
Sbjct: 104 LPLLKFLGIFNTGLK-MFPDLTKVYSTDIFFILEITDNPYMTSIPV-------------- 148

Query: 81  KAFEYSTNLNVLRVIELSKNNFLGEIAKGVTNPGASQTLNLSQNSFSRTIPESIGSMKSL 140
            AF+   N      ++L  N     +     N      + L++N +   I +   +   +
Sbjct: 149 NAFQGLCNE--TLTLKLYNNG-FTSVQGYAFNGTKLDAVYLNKNKYLTVIDK--DAFGGV 203

Query: 141 ESIDFSANHYLNLSNNNLTGEIPSGI 166
            S        L++S  ++T  +PS  
Sbjct: 204 YS----GPSLLDVSQTSVT-ALPSKG 224

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 42.5 bits (100), Expect = 3e-05
 Identities = 36/144 (25%), Positives = 53/144 (36%), Gaps = 26/144 (18%)

Query: 23  LSSLESLHLHRNHLSGAIPLSLQNGTHFEVLDLRENAFIRDVPKWIKKSLLALFMMKGKA 82
           L++L SL L  NHL+     +     +   LDL  N  +  + +                
Sbjct: 63  LTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNH-LHTLDE--------------FL 107

Query: 83  FEYSTNLNVLRVIELSKNNFLGEIAKGV-TNPGASQTLNLSQNSFSRTIPESIGSMKSLE 141
           F     L VL    L  NN +  + +    +    Q L LSQN  SR   E I     L 
Sbjct: 108 FSDLQALEVLL---LY-NNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLP 163

Query: 142 SIDFSANHYLNLSNNNLTGEIPSG 165
            +       L+LS+N L  ++P  
Sbjct: 164 KL-----MLLDLSSNKLK-KLPLT 181

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 38.7 bits (90), Expect = 5e-04
 Identities = 29/141 (20%), Positives = 45/141 (31%), Gaps = 29/141 (20%)

Query: 23  LSSLESLHLHRNHLSGAIPLSLQNGTHFEVLDLRENAFIRDVPKWIKKSLLALFMMKGKA 82
           + +L  L L  NHL         +    EVL L  N  I  V +               A
Sbjct: 87  VPNLRYLDLSSNHLHTLDEFLFSDLQALEVLLLYNNH-IVVVDR--------------NA 131

Query: 83  FEYSTNLNVLRVIELSKNNFLGEIAKGVTNPGAS----QTLNLSQNSFSRTIPESIGSMK 138
           F    ++  L+ + LS  N +      +   G        L+LS N   +     +  + 
Sbjct: 132 F---EDMAQLQKLYLS-QNQISRFPVELIKDGNKLPKLMLLDLSSNKLKKLPLTDLQKLP 187

Query: 139 SLESIDFSANHYLNLSNNNLT 159
           +         + L L NN L 
Sbjct: 188 AWV------KNGLYLHNNPLE 202

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 42.0 bits (99), Expect = 5e-05
 Identities = 24/146 (16%), Positives = 48/146 (32%), Gaps = 23/146 (15%)

Query: 24  SSLESLHLHRNHLS--GAIPLS--LQNGTHFEVLDLRENAFIRDVPKWIKKSLLALFMMK 79
             L S+   RN L        +   Q+      + + +N  IR   + I+  L       
Sbjct: 159 PPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNG-IRP--EGIEHLL------- 208

Query: 80  GKAFEYSTNLNVLRVIELSKNNFLGE----IAKGVTNPGASQTLNLSQNSFSRTIPESIG 135
            +   Y   L   +V++L  N F       +A  + +    + L L+    S     ++ 
Sbjct: 209 LEGLAYCQEL---KVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVV 265

Query: 136 SMKSLESIDFSANHYLNLSNNNLTGE 161
              +   ++      L L  N +  +
Sbjct: 266 --DAFSKLENIGLQTLRLQYNEIELD 289

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 40.7 bits (96), Expect = 8e-05
 Identities = 17/156 (10%), Positives = 50/156 (32%), Gaps = 37/156 (23%)

Query: 19  STGALSSLESLHLHRNHLSGAIPLSLQNGTHFEVLDLRENAFIRDVPKWIKKSLLALFMM 78
           +   ++SL  + L   +++    +  +   + + L +       +               
Sbjct: 39  TEAQMNSLTYITLANINVTDLTGI--EYAHNIKDLTINNIH-ATNY-------------- 81

Query: 79  KGKAFEYSTNLNVLRVIELSKNNFLGEIAKGVTNPGASQTLNLSQNSFSRTIPESIGSMK 138
                   + L+ L  + +   +   +    ++   +   L++S ++   +I   I ++ 
Sbjct: 82  -----NPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLP 136

Query: 139 SLESIDFSANH---------------YLNLSNNNLT 159
            + SID S N                 LN+  + + 
Sbjct: 137 KVNSIDLSYNGAITDIMPLKTLPELKSLNIQFDGVH 172

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 39.9 bits (94), Expect = 1e-04
 Identities = 19/153 (12%), Positives = 49/153 (32%), Gaps = 35/153 (22%)

Query: 23  LSSLESLHLHRNHLSGAIPLSLQNGTHFEVLDLRENAFIRDVPKWIKKSLLALFMMKGKA 82
             +++ L ++  H +   P+S    ++ E L +       D    +              
Sbjct: 65  AHNIKDLTINNIHATNYNPIS--GLSNLERLRIMGKDVTSDKIPNLS------------- 109

Query: 83  FEYSTNLNVLRVIELSKNNFLGEIAKGVTNPGASQTLNLSQNSFSRTIPESIGSMKSLES 142
                 L  L ++++S +     I   +       +++LS N     I   + ++  L+S
Sbjct: 110 -----GLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDI-MPLKTLPELKS 163

Query: 143 IDFSANH--------------YLNLSNNNLTGE 161
           ++   +                L   +  + G+
Sbjct: 164 LNIQFDGVHDYRGIEDFPKLNQLYAFSQTIGGK 196

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 40.9 bits (96), Expect = 9e-05
 Identities = 23/153 (15%), Positives = 49/153 (32%), Gaps = 27/153 (17%)

Query: 23  LSSLESLHLHRNHLSGAIPLSLQNGTHFEVLDLRENAFIRDVPKWIKKSLLALFMMK--- 79
           L+ LE L +  + L    P SL++  +   L L        + +       ++  ++   
Sbjct: 173 LTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQ-HILLLEIFVDVTSSVECLELRD 231

Query: 80  ------------GKAFEYSTNLNVLRVIELSKNNFLGEIAKGVTNPGASQTLNLSQNSFS 127
                                    R ++++  + L ++ K +        L  S+N   
Sbjct: 232 TDLDTFHFSELSTGETNSLIKKFTFRNVKITDES-LFQVMKLLNQISGLLELEFSRNQLK 290

Query: 128 RTIPESI-GSMKSLESIDFSANHYLNLSNNNLT 159
            ++P+ I   + SL+ I         L  N   
Sbjct: 291 -SVPDGIFDRLTSLQKIW--------LHTNPWD 314

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 40.8 bits (96), Expect = 1e-04
 Identities = 18/154 (11%), Positives = 39/154 (25%), Gaps = 25/154 (16%)

Query: 21  GALSSLESLHLHRNHLSGAIPLSLQNGTHFEVLDLRENAFIRDVPKWIKKSLLALFM--M 78
                L  L    N L+    + +   T     D   N  + ++       L  L     
Sbjct: 209 NQNIQLTFLDCSSNKLTE---IDVTPLTQLTYFDCSVNP-LTELDVSTLSKLTTLHCIQT 264

Query: 79  KGKAFEYSTNLNVLRVIELSKNNFLGEIAKGVTNPGASQTLNLSQNSFSRTIPESIGSMK 138
                + + N   L   +      + E+   VT+      L+      +  +   +    
Sbjct: 265 DLLEIDLTHNTQ-LIYFQAEGCRKIKELD--VTHNTQLYLLDCQAAGIT-ELD--LSQNP 318

Query: 139 SLESIDFSANH-------------YLNLSNNNLT 159
            L  +  +                 L+  N ++ 
Sbjct: 319 KLVYLYLNNTELTELDVSHNTKLKSLSCVNAHIQ 352

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 38.1 bits (89), Expect = 9e-04
 Identities = 28/154 (18%), Positives = 51/154 (33%), Gaps = 25/154 (16%)

Query: 21  GALSSLESLHLHRNHLSGAIPLSLQNGTHFEVLDLRENAFIRDVPKWIKKSL--LALFMM 78
              ++L  L    N L+    L +   T    L+   N  +  +       L  L     
Sbjct: 82  SQNTNLTYLACDSNKLTN---LDVTPLTKLTYLNCDTN-KLTKLDVSQNPLLTYLNCARN 137

Query: 79  KGKAFEYSTNLNVLRVIELSKNNFLGEIAKGVTNPGASQTLNLSQNSFSRTIPESIGSMK 138
                + S N   L  ++   N  + ++   VT      TL+ S N  +  +   +   K
Sbjct: 138 TLTEIDVSHNTQ-LTELDCHLNKKITKLD--VTPQTQLTTLDCSFNKIT-ELD--VSQNK 191

Query: 139 SLESIDFSANH-------------YLNLSNNNLT 159
            L  ++   N+             +L+ S+N LT
Sbjct: 192 LLNRLNCDTNNITKLDLNQNIQLTFLDCSSNKLT 225

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 39.7 bits (93), Expect = 2e-04
 Identities = 36/156 (23%), Positives = 52/156 (33%), Gaps = 24/156 (15%)

Query: 20  TGALSSLESLHLHRNHLSGAIPLSLQNGTHFEVLDLRENAFIRDVPKWIKKSLLALFMMK 79
                    LHL  N L      +L   T    L+L     +  +       +L    + 
Sbjct: 27  PDLPKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAE-LTKLQVDGTLPVLGTLDLS 85

Query: 80  GK-------AFEYSTNLNVLRVIELSKNNFLGEIAKGV-TNPGASQTLNLSQNSFSRTIP 131
                      +    L VL    +S N  L  +  G     G  Q L L  N    T+P
Sbjct: 86  HNQLQSLPLLGQTLPALTVLD---VSFNR-LTSLPLGALRGLGELQELYLKGNELK-TLP 140

Query: 132 ESI-GSMKSLESIDFSANHYLNLSNNNLTGEIPSGI 166
             +      LE         L+L+NNNLT E+P+G+
Sbjct: 141 PGLLTPTPKLE--------KLSLANNNLT-ELPAGL 167

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 39.2 bits (92), Expect = 3e-04
 Identities = 30/161 (18%), Positives = 59/161 (36%), Gaps = 38/161 (23%)

Query: 24  SSLESLHLHRNHLSGAIPLSLQNGTHFEVLDLRENAFIRDVPKWIKKSLLALFMMKGKAF 83
            S ++L L  N L      S  +    +VLDL     I+ +                 A+
Sbjct: 28  FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCE-IQTIED--------------GAY 72

Query: 84  EYSTNLNVLRVIELSKNNFLGEIAKGV-TNPGASQTLNLSQNSFSRTIPESIGSMKSLES 142
           +  ++L+ L    L+ N  +  +A G  +   + Q L   + + +      IG +K+L+ 
Sbjct: 73  QSLSHLSTLI---LTGNP-IQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKE 128

Query: 143 IDFSANH-----------------YLNLSNNNLTGEIPSGI 166
           ++ + N                  +L+LS+N +   I    
Sbjct: 129 LNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQ-SIYCTD 168

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	190
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	99.96
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	99.95
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	99.93
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	99.92
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	99.9
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	99.9
3m19_A	251	Variable lymphocyte receptor A diversity region; a	99.89
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	99.88
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	99.88
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	99.88
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	99.88
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	99.88
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	99.87
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	99.87
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	99.87
3m19_A	251	Variable lymphocyte receptor A diversity region; a	99.87
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	99.87
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	99.86
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	99.86
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	99.86
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	99.86
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	99.86
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	99.86
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	99.85
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	99.85
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	99.85
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	99.85
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	99.85
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	99.85
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	99.85
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	99.85
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	99.85
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	99.84
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	99.84
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	99.84
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	99.84
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	99.84
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	99.84
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	99.84
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	99.84
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	99.84
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	99.84
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	99.84
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	99.84
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	99.83
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	99.83
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	99.83
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	99.83
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	99.82
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	99.82
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	99.82
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	99.82
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	99.82
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	99.82
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	99.82
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	99.81
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	99.81
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	99.81
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	99.81
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	99.81
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	99.81
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	99.81
3e6j_A	229	Variable lymphocyte receptor diversity region; var	99.81
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	99.81
3e6j_A	229	Variable lymphocyte receptor diversity region; var	99.81
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	99.8
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	99.8
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	99.8
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	99.8
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	99.8
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	99.79
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	99.79
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	99.78
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.78
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	99.78
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	99.78
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.78
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	99.78
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	99.78
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	99.77
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	99.77
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	99.77
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	99.76
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	99.76
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	99.76
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	99.76
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	99.76
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	99.75
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	99.75
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	99.75
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	99.75
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	99.74
1o6v_A	466	Internalin A; bacterial infection, extracellular r	99.74
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	99.73
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	99.73
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	99.72
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	99.72
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	99.71
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	99.71
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	99.71
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	99.71
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	99.71
1o6v_A	466	Internalin A; bacterial infection, extracellular r	99.7
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	99.69
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	99.69
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	99.69
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	99.69
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	99.69
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.68
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	99.67
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	99.67
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	99.67
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	99.66
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	99.66
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	99.66
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	99.66
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	99.65
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	99.65
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	99.63
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.63
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	99.63
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	99.63
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	99.6
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	99.6
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	99.59
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	99.59
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	99.57
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	99.57
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	99.57
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	99.57
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	99.56
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	99.55
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	99.55
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	99.46
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	99.39
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	99.36
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	99.27
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	99.15
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	99.08
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	99.06
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	99.03
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	98.95
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	98.94
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	98.91
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	98.75
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	98.73
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	98.53
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	98.47
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	98.46
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	98.45
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	98.41
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	98.25
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	98.01
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	98.0
1pgv_A	197	TMD-1, tropomodulin TMD-1; structural genomics, PS	97.86
1pgv_A	197	TMD-1, tropomodulin TMD-1; structural genomics, PS	97.66
3rfe_A	130	Platelet glycoprotein IB beta chain; platelet surf	97.16
4h09_A	379	Hypothetical leucine rich repeat protein; two LRR_	97.02
4gt6_A	394	Cell surface protein; leucine rich repeats, putati	96.99
3rfe_A	130	Platelet glycoprotein IB beta chain; platelet surf	96.94
4fs7_A	394	Uncharacterized protein; leucine-rich repeats, pro	96.67
4fs7_A	394	Uncharacterized protein; leucine-rich repeats, pro	96.49
4gt6_A	394	Cell surface protein; leucine rich repeats, putati	96.36
4h09_A	379	Hypothetical leucine rich repeat protein; two LRR_	96.19

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=99.96  E-value=6.2e-30  Score=217.30  Aligned_cols=188  Identities=30%  Similarity=0.459  Sum_probs=149.9

Q ss_pred             CcceeccCCccccCCCcccCCCCCCcEEEcccCcccCcCCccccCCCCccEEeccCCcccCCCcHHHHHHHHHH------
Q 039561            2 LQQGLKIQHKFSRSFPTSTGALSSLESLHLHRNHLSGAIPLSLQNGTHFEVLDLRENAFIRDVPKWIKKSLLAL------   75 (190)
Q Consensus         2 L~~L~l~~n~l~~~~p~~l~~l~~L~~l~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~~~~~l------   75 (190)
                      |++|++++|.+++.+|.+++.+++|++|++++|.+++.+|..+..+++|++|++++|.+.+.+|..+.. ...+      
T Consensus       492 L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~-~~~~~~~~~~  570 (768)
T 3rgz_A          492 LNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFK-QSGKIAANFI  570 (768)
T ss_dssp             CCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSEEESBCCGGGGT-TTTCBCCSTT
T ss_pred             CCEEEccCCccCCcCChHHhcCCCCCEEECCCCcccCcCCHHHcCCCCCCEEECCCCccCCcCChHHhc-ccchhhhhcc
Confidence            556666666666666666666666777777777666666666666777777777777776666665432 1100      


Q ss_pred             -----------------------------------------------HhhcCCcccccCCCCCCcEEEccCCeecccCCc
Q 039561           76 -----------------------------------------------FMMKGKAFEYSTNLNVLRVIELSKNNFLGEIAK  108 (190)
Q Consensus        76 -----------------------------------------------~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~  108 (190)
                                                                     ..+.+.+|..++.++.++.|++++|+++|.+|.
T Consensus       571 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l~g~ip~  650 (768)
T 3rgz_A          571 AGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPK  650 (768)
T ss_dssp             CSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCCEEECCSSCCBSCCCG
T ss_pred             ccccccccccccccccccccccccccccccchhhhccccccccccccceecccCchhhhccccccEEECcCCcccccCCH
Confidence                                                           011233455667788999999999999999999


Q ss_pred             cCCCCCCCcEEEcccCcceeccCccccCCCCCCEEeCCCCc----------------eEEeecccccccCCccccccccc
Q 039561          109 GVTNPGASQTLNLSQNSFSRTIPESIGSMKSLESIDFSANH----------------YLNLSNNNLTGEIPSGIQLQGFH  172 (190)
Q Consensus       109 ~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~l~l~~N~----------------~l~l~~N~l~g~~p~~~~~~~l~  172 (190)
                      .++.++.|+.|++++|.++|.+|..++.+++|+.||+++|+                ++|+++|+++|.+|+..++.++.
T Consensus       651 ~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ls~N~l~g~iP~~~~~~~~~  730 (768)
T 3rgz_A          651 EIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPEMGQFETFP  730 (768)
T ss_dssp             GGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCCGGGGGCCCCSEEECCSSEEEEECCSSSSGGGSC
T ss_pred             HHhccccCCEEeCcCCccCCCCChHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECcCCcccccCCCchhhccCC
Confidence            99999999999999999999999999999999999999998                89999999999999998999999


Q ss_pred             cccccCC-cccCCCCCCCC
Q 039561          173 QSRFAGS-ELCGAPFPKCL  190 (190)
Q Consensus       173 ~~~~~~n-~l~~~~~~~c~  190 (190)
                      ...+.|| .+||.|++.|.
T Consensus       731 ~~~~~gN~~Lcg~~l~~C~  749 (768)
T 3rgz_A          731 PAKFLNNPGLCGYPLPRCD  749 (768)
T ss_dssp             GGGGCSCTEEESTTSCCCC
T ss_pred             HHHhcCCchhcCCCCcCCC
Confidence            9999999 99999988884

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=99.95  E-value=4.3e-27  Score=180.77  Aligned_cols=187  Identities=29%  Similarity=0.447  Sum_probs=155.1

Q ss_pred             CCcceeccCCccccCCCcccCCCCCCcEEEcccCcccCcCCccccCCCCccEEeccCCcccCCCcHHHHHHHH-HHHhh-
Q 039561            1 MLQQGLKIQHKFSRSFPTSTGALSSLESLHLHRNHLSGAIPLSLQNGTHFEVLDLRENAFIRDVPKWIKKSLL-ALFMM-   78 (190)
Q Consensus         1 ~L~~L~l~~n~l~~~~p~~l~~l~~L~~l~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~~~~-~l~~~-   78 (190)
                      .|++|++++|.+++.+|..+..+++|++|++++|.+++.+|..+..+++|++|++++|.+.+.+|..+.. +. .|..+ 
T Consensus       102 ~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~-l~~~L~~L~  180 (313)
T 1ogq_A          102 QLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGS-FSKLFTSMT  180 (313)
T ss_dssp             TCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGC-CCTTCCEEE
T ss_pred             CCCEEECcCCeeCCcCCHHHhCCCCCCEEeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhh-hhhcCcEEE
Confidence            3788889999998878888888999999999999988888888888889999999999888778876653 33 33222 


Q ss_pred             ------cCCcccccCCCCCCcEEEccCCeecccCCccCCCCCCCcEEEcccCcceeccCccccCCCCCCEEeCCCCc---
Q 039561           79 ------KGKAFEYSTNLNVLRVIELSKNNFLGEIAKGVTNPGASQTLNLSQNSFSRTIPESIGSMKSLESIDFSANH---  149 (190)
Q Consensus        79 ------~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~l~l~~N~---  149 (190)
                            .+..|..+..+. |++|++++|.+.+..|..+..+++|+.|++++|.+++.+|. +..+++|+.|++++|.   
T Consensus       181 L~~N~l~~~~~~~~~~l~-L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~-~~~l~~L~~L~Ls~N~l~~  258 (313)
T 1ogq_A          181 ISRNRLTGKIPPTFANLN-LAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGK-VGLSKNLNGLDLRNNRIYG  258 (313)
T ss_dssp             CCSSEEEEECCGGGGGCC-CSEEECCSSEEEECCGGGCCTTSCCSEEECCSSEECCBGGG-CCCCTTCCEEECCSSCCEE
T ss_pred             CcCCeeeccCChHHhCCc-ccEEECcCCcccCcCCHHHhcCCCCCEEECCCCceeeecCc-ccccCCCCEEECcCCcccC
Confidence                  334556666666 88899999988878888888889999999999988865554 7788889999999887   


Q ss_pred             -------------eEEeecccccccCCccccccccccccccCC-cccCCCCCCCC
Q 039561          150 -------------YLNLSNNNLTGEIPSGIQLQGFHQSRFAGS-ELCGAPFPKCL  190 (190)
Q Consensus       150 -------------~l~l~~N~l~g~~p~~~~~~~l~~~~~~~n-~l~~~~~~~c~  190 (190)
                                   +|++++|.++|.+|+...+.+++.+.+.+| .+||.|.+.|.
T Consensus       259 ~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~~~l~~L~~l~l~~N~~lc~~p~~~C~  313 (313)
T 1ogq_A          259 TLPQGLTQLKFLHSLNVSFNNLCGEIPQGGNLQRFDVSAYANNKCLCGSPLPACT  313 (313)
T ss_dssp             CCCGGGGGCTTCCEEECCSSEEEEECCCSTTGGGSCGGGTCSSSEEESTTSSCCC
T ss_pred             cCChHHhcCcCCCEEECcCCcccccCCCCccccccChHHhcCCCCccCCCCCCCC
Confidence                         899999999999999888999999999999 79999988884

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=99.93  E-value=8.8e-26  Score=191.85  Aligned_cols=182  Identities=30%  Similarity=0.451  Sum_probs=128.5

Q ss_pred             CcceeccCCccccCCCcccCCCCCCcEEEcccCcccCcCCccccCCCCccEEeccCCcccCCCcHHHHHHHHHHHhh---
Q 039561            2 LQQGLKIQHKFSRSFPTSTGALSSLESLHLHRNHLSGAIPLSLQNGTHFEVLDLRENAFIRDVPKWIKKSLLALFMM---   78 (190)
Q Consensus         2 L~~L~l~~n~l~~~~p~~l~~l~~L~~l~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~~~~~l~~~---   78 (190)
                      |++|++++|.+++.+|..+..+++|++|++++|.+++.+|..+..+++|++|++++|.+.+.+|.++.. +++|..+   
T Consensus       444 L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~-l~~L~~L~L~  522 (768)
T 3rgz_A          444 LRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGR-LENLAILKLS  522 (768)
T ss_dssp             CCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGG-CTTCCEEECC
T ss_pred             CCEEECCCCcccCcCCHHHcCCCCceEEEecCCcccCcCCHHHhcCCCCCEEEccCCccCCcCChHHhc-CCCCCEEECC
Confidence            455555555555555555666666666666666666556666666666666666666666666665542 4444222   


Q ss_pred             ----cCCcccccCCCCCCcEEEccCCeecccCCccC--------------------------------------------
Q 039561           79 ----KGKAFEYSTNLNVLRVIELSKNNFLGEIAKGV--------------------------------------------  110 (190)
Q Consensus        79 ----~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~--------------------------------------------  110 (190)
                          .+.+|..++.+++|++|++++|.+.|.+|..+                                            
T Consensus       523 ~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  602 (768)
T 3rgz_A          523 NNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSE  602 (768)
T ss_dssp             SSCCEEECCGGGGGCTTCCEEECCSSEEESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGG
T ss_pred             CCcccCcCCHHHcCCCCCCEEECCCCccCCcCChHHhcccchhhhhccccccccccccccccccccccccccccccccch
Confidence                33456667777788888888877776665433                                            


Q ss_pred             --------------------------CCCCCCcEEEcccCcceeccCccccCCCCCCEEeCCCCc---------------
Q 039561          111 --------------------------TNPGASQTLNLSQNSFSRTIPESIGSMKSLESIDFSANH---------------  149 (190)
Q Consensus       111 --------------------------~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~l~l~~N~---------------  149 (190)
                                                +.++.|+.|++++|.++|.+|..++.+++|+.|++++|+               
T Consensus       603 ~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L  682 (768)
T 3rgz_A          603 QLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGL  682 (768)
T ss_dssp             GGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCCEEECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTC
T ss_pred             hhhccccccccccccceecccCchhhhccccccEEECcCCcccccCCHHHhccccCCEEeCcCCccCCCCChHHhCCCCC
Confidence                                      234567788888888888888888888888888888887               


Q ss_pred             -eEEeecccccccCCccc-cccccccccccCCcccCC
Q 039561          150 -YLNLSNNNLTGEIPSGI-QLQGFHQSRFAGSELCGA  184 (190)
Q Consensus       150 -~l~l~~N~l~g~~p~~~-~~~~l~~~~~~~n~l~~~  184 (190)
                       +||+++|+++|.+|+.+ .+..++.+++++|.++|.
T Consensus       683 ~~LdLs~N~l~g~ip~~l~~l~~L~~L~ls~N~l~g~  719 (768)
T 3rgz_A          683 NILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGP  719 (768)
T ss_dssp             CEEECCSSCCEECCCGGGGGCCCCSEEECCSSEEEEE
T ss_pred             CEEECCCCcccCcCChHHhCCCCCCEEECcCCccccc
Confidence             79999999999999887 788899999999987754

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=99.92  E-value=1.7e-25  Score=171.91  Aligned_cols=181  Identities=25%  Similarity=0.360  Sum_probs=160.9

Q ss_pred             CCcceeccC-CccccCCCcccCCCCCCcEEEcccCcccCcCCccccCCCCccEEeccCCcccCCCcHHHHHHHHHHHhh-
Q 039561            1 MLQQGLKIQ-HKFSRSFPTSTGALSSLESLHLHRNHLSGAIPLSLQNGTHFEVLDLRENAFIRDVPKWIKKSLLALFMM-   78 (190)
Q Consensus         1 ~L~~L~l~~-n~l~~~~p~~l~~l~~L~~l~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~~~~~l~~~-   78 (190)
                      .|++|++++ |.+.+.+|..++.+++|++|++++|.+++.+|..+..+++|++|++++|.+.+.+|..+.. +++|..+ 
T Consensus        77 ~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~-l~~L~~L~  155 (313)
T 1ogq_A           77 YLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISS-LPNLVGIT  155 (313)
T ss_dssp             TCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGG-CTTCCEEE
T ss_pred             CCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCEEeCCCCccCCcCChHHhc-CCCCCeEE
Confidence            378999995 9999999999999999999999999999889999999999999999999999888887764 6666433 


Q ss_pred             ------cCCcccccCCCC-CCcEEEccCCeecccCCccCCCCCCCcEEEcccCcceeccCccccCCCCCCEEeCCCCc--
Q 039561           79 ------KGKAFEYSTNLN-VLRVIELSKNNFLGEIAKGVTNPGASQTLNLSQNSFSRTIPESIGSMKSLESIDFSANH--  149 (190)
Q Consensus        79 ------~~~~~~~~~~~~-~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~l~l~~N~--  149 (190)
                            .+.+|..++.++ .|++|++++|.+.+.+|..+..+. |+.|++++|.+++..|..+..+++|+.|++++|.  
T Consensus       156 L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~-L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~  234 (313)
T 1ogq_A          156 FDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLA  234 (313)
T ss_dssp             CCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCC-CSEEECCSSEEEECCGGGCCTTSCCSEEECCSSEEC
T ss_pred             CcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCc-ccEEECcCCcccCcCCHHHhcCCCCCEEECCCCcee
Confidence                  335677788887 899999999999988898888887 9999999999998889999999999999999996  


Q ss_pred             -------------eEEeecccccccCCccc-cccccccccccCCcccC
Q 039561          150 -------------YLNLSNNNLTGEIPSGI-QLQGFHQSRFAGSELCG  183 (190)
Q Consensus       150 -------------~l~l~~N~l~g~~p~~~-~~~~l~~~~~~~n~l~~  183 (190)
                                   +|++++|.++|.+|..+ .+.+++.+++++|.+++
T Consensus       235 ~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~  282 (313)
T 1ogq_A          235 FDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCG  282 (313)
T ss_dssp             CBGGGCCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEE
T ss_pred             eecCcccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCcccc
Confidence                         89999999999999987 78999999999998774

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=99.90  E-value=7.9e-23  Score=154.76  Aligned_cols=178  Identities=21%  Similarity=0.186  Sum_probs=125.7

Q ss_pred             CCcceeccCCccccCCCcccCCCCCCcEEEcccCcccCcCCccccCCCCccEEeccCCc-ccCCCcHHHHHHHHHHHhh-
Q 039561            1 MLQQGLKIQHKFSRSFPTSTGALSSLESLHLHRNHLSGAIPLSLQNGTHFEVLDLRENA-FIRDVPKWIKKSLLALFMM-   78 (190)
Q Consensus         1 ~L~~L~l~~n~l~~~~p~~l~~l~~L~~l~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~-~~~~~p~~~~~~~~~l~~~-   78 (190)
                      .|++|++++|.++...+..+..+++|++|++++|.+++..+..+..+++|++|++++|. +....|..+.. +++|..+ 
T Consensus        33 ~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~l~~~~~~~~~~-l~~L~~L~  111 (285)
T 1ozn_A           33 ASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHG-LGRLHTLH  111 (285)
T ss_dssp             TCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTT-CTTCCEEE
T ss_pred             CceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCCccccCHHHhcC-CcCCCEEE
Confidence            36788999999988666778889999999999999986667788888999999999997 55444554432 4444222 


Q ss_pred             ------cCCcccccCCCCCCcEEEccCCeecccCCccCCCCCCCcEEEcccCcceeccCccccCCCCCCEEeCCCCc---
Q 039561           79 ------KGKAFEYSTNLNVLRVIELSKNNFLGEIAKGVTNPGASQTLNLSQNSFSRTIPESIGSMKSLESIDFSANH---  149 (190)
Q Consensus        79 ------~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~l~l~~N~---  149 (190)
                            ....+..+..+++|++|++++|.+.+..+..++.+++|+.|++++|.+++..+..+..+++|+.|++++|.   
T Consensus       112 l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~  191 (285)
T 1ozn_A          112 LDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAH  191 (285)
T ss_dssp             CTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCE
T ss_pred             CCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCcccccCHHHhcCccccCEEECCCCcccc
Confidence                  22224456667777777777777775444557777777777777777775545567777777777777775   


Q ss_pred             -------------eEEeecccccccCCccc-cccccccccccCC
Q 039561          150 -------------YLNLSNNNLTGEIPSGI-QLQGFHQSRFAGS  179 (190)
Q Consensus       150 -------------~l~l~~N~l~g~~p~~~-~~~~l~~~~~~~n  179 (190)
                                   +|++++|.+++..|..+ .+.+++.+++++|
T Consensus       192 ~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N  235 (285)
T 1ozn_A          192 VHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDN  235 (285)
T ss_dssp             ECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSS
T ss_pred             cCHhHccCcccccEeeCCCCcCCcCCHHHcccCcccCEEeccCC
Confidence                         67777777774333333 5677777777777

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=99.90  E-value=9.8e-24  Score=163.06  Aligned_cols=173  Identities=19%  Similarity=0.219  Sum_probs=122.6

Q ss_pred             CcceeccCCccccCCCcccCCCCCCcEEEcccCcccCcCCccccCCCCccEEeccCCcccCCCcHHHHHHHHHHHhh---
Q 039561            2 LQQGLKIQHKFSRSFPTSTGALSSLESLHLHRNHLSGAIPLSLQNGTHFEVLDLRENAFIRDVPKWIKKSLLALFMM---   78 (190)
Q Consensus         2 L~~L~l~~n~l~~~~p~~l~~l~~L~~l~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~~~~~l~~~---   78 (190)
                      +++|++++|.++ .+|+.++.+++|++|++++|.++ .+|..+..+++|++|++++|.+. .+|..+.. +++|..+   
T Consensus        83 l~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n~l~-~lp~~l~~-l~~L~~L~L~  158 (328)
T 4fcg_A           83 RVALELRSVPLP-QFPDQAFRLSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLR-ALPASIAS-LNRLRELSIR  158 (328)
T ss_dssp             CCEEEEESSCCS-SCCSCGGGGTTCSEEEEESSCCC-CCCSCGGGGTTCSEEEEESCCCC-CCCGGGGG-CTTCCEEEEE
T ss_pred             eeEEEccCCCch-hcChhhhhCCCCCEEECCCCCcc-chhHHHhccCCCCEEECCCCccc-cCcHHHhc-CcCCCEEECC
Confidence            466777777777 36777777778888888888777 67777777777888888877766 56665543 4444222   


Q ss_pred             ----cCCcccccC---------CCCCCcEEEccCCeecccCCccCCCCCCCcEEEcccCcceeccCccccCCCCCCEEeC
Q 039561           79 ----KGKAFEYST---------NLNVLRVIELSKNNFLGEIAKGVTNPGASQTLNLSQNSFSRTIPESIGSMKSLESIDF  145 (190)
Q Consensus        79 ----~~~~~~~~~---------~~~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~l~l  145 (190)
                          .+.+|..+.         .+++|++|++++|.++ .+|..++.+++|++|++++|.++ .+|..+..+++|+.|++
T Consensus       159 ~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~N~l~-~l~~~l~~l~~L~~L~L  236 (328)
T 4fcg_A          159 ACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLS-ALGPAIHHLPKLEELDL  236 (328)
T ss_dssp             EETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCC-CCCGGGGGCTTCCEEEEESSCCC-CCCGGGGGCTTCCEEEC
T ss_pred             CCCCccccChhHhhccchhhhccCCCCCEEECcCCCcC-cchHhhcCCCCCCEEEccCCCCC-cCchhhccCCCCCEEEC
Confidence                233444433         3777778888777777 67777777777888888877777 46666777777777777


Q ss_pred             CCCc----------------eEEeecccccccCCccc-cccccccccccCCc
Q 039561          146 SANH----------------YLNLSNNNLTGEIPSGI-QLQGFHQSRFAGSE  180 (190)
Q Consensus       146 ~~N~----------------~l~l~~N~l~g~~p~~~-~~~~l~~~~~~~n~  180 (190)
                      ++|.                +|++++|.+.+.+|..+ .+.+++.+++++|.
T Consensus       237 s~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~  288 (328)
T 4fcg_A          237 RGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCV  288 (328)
T ss_dssp             TTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCT
T ss_pred             cCCcchhhhHHHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCC
Confidence            7765                67777777777777766 67777777777773

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=99.89  E-value=1.1e-22  Score=151.49  Aligned_cols=130  Identities=15%  Similarity=0.120  Sum_probs=87.2

Q ss_pred             CcceeccCCccccCCCcccCCCCCCcEEEcccCcccCcCCccccCCCCccEEeccCCcccCCCcHHHHHHHHHHHhhcCC
Q 039561            2 LQQGLKIQHKFSRSFPTSTGALSSLESLHLHRNHLSGAIPLSLQNGTHFEVLDLRENAFIRDVPKWIKKSLLALFMMKGK   81 (190)
Q Consensus         2 L~~L~l~~n~l~~~~p~~l~~l~~L~~l~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~~~~~l~~~~~~   81 (190)
                      +++|++++|.+++..+..+..+++|++|++++|.+++..+..|..+++|++|++++|.+.+..+..+.            
T Consensus        37 l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~------------  104 (251)
T 3m19_A           37 TEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASLPLGVFD------------  104 (251)
T ss_dssp             CCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTT------------
T ss_pred             CCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECCCCcccccChhHhc------------
Confidence            56677777777776566677777777777777777755555566777777777777776543333333            


Q ss_pred             cccccCCCCCCcEEEccCCeecccCCccCCCCCCCcEEEcccCcceeccCccccCCCCCCEEeCCCCc
Q 039561           82 AFEYSTNLNVLRVIELSKNNFLGEIAKGVTNPGASQTLNLSQNSFSRTIPESIGSMKSLESIDFSANH  149 (190)
Q Consensus        82 ~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~l~l~~N~  149 (190)
                            .+++|++|++++|.+++..+..+..+++|+.|++++|.+++..+..+..+++|+.|++++|+
T Consensus       105 ------~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~  166 (251)
T 3m19_A          105 ------HLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQ  166 (251)
T ss_dssp             ------TCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred             ------ccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCc
Confidence                  36777777777777774444456677777777777777775545567777777766655554

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=99.88  E-value=9.7e-23  Score=157.46  Aligned_cols=179  Identities=19%  Similarity=0.220  Sum_probs=153.7

Q ss_pred             CCcceeccCCccccCCCcccCCCCCCcEEEcccCcccCcCCccccCCCCccEEeccCCcccCCCcHHHHH--------HH
Q 039561            1 MLQQGLKIQHKFSRSFPTSTGALSSLESLHLHRNHLSGAIPLSLQNGTHFEVLDLRENAFIRDVPKWIKK--------SL   72 (190)
Q Consensus         1 ~L~~L~l~~n~l~~~~p~~l~~l~~L~~l~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~--------~~   72 (190)
                      .|++|++++|.++ .+|..++.+++|++|++++|.++ .+|..+..+++|++|++++|++.+.+|..+..        .+
T Consensus       105 ~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L~L~~n~~~~~~p~~~~~~~~~~~~~~l  182 (328)
T 4fcg_A          105 HLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLRELSIRACPELTELPEPLASTDASGEHQGL  182 (328)
T ss_dssp             TCSEEEEESSCCC-CCCSCGGGGTTCSEEEEESCCCC-CCCGGGGGCTTCCEEEEEEETTCCCCCSCSEEEC-CCCEEES
T ss_pred             CCCEEECCCCCcc-chhHHHhccCCCCEEECCCCccc-cCcHHHhcCcCCCEEECCCCCCccccChhHhhccchhhhccC
Confidence            3788999999999 68989999999999999999999 88988999999999999998888888875421        13


Q ss_pred             HHHHhh------cCCcccccCCCCCCcEEEccCCeecccCCccCCCCCCCcEEEcccCcceeccCccccCCCCCCEEeCC
Q 039561           73 LALFMM------KGKAFEYSTNLNVLRVIELSKNNFLGEIAKGVTNPGASQTLNLSQNSFSRTIPESIGSMKSLESIDFS  146 (190)
Q Consensus        73 ~~l~~~------~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~l~l~  146 (190)
                      ++|..+      -..+|..++.+++|++|++++|.+. .+|..++.+++|+.|++++|.+.+.+|..+..+++|+.|+++
T Consensus       183 ~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~N~l~-~l~~~l~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~  261 (328)
T 4fcg_A          183 VNLQSLRLEWTGIRSLPASIANLQNLKSLKIRNSPLS-ALGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILK  261 (328)
T ss_dssp             TTCCEEEEEEECCCCCCGGGGGCTTCCEEEEESSCCC-CCCGGGGGCTTCCEEECTTCTTCCBCCCCTTCCCCCCEEECT
T ss_pred             CCCCEEECcCCCcCcchHhhcCCCCCCEEEccCCCCC-cCchhhccCCCCCEEECcCCcchhhhHHHhcCCCCCCEEECC
Confidence            444322      1256777888999999999999998 577789999999999999999999999999999999999999


Q ss_pred             CCc----------------eEEeecccccccCCccc-cccccccccccCCccc
Q 039561          147 ANH----------------YLNLSNNNLTGEIPSGI-QLQGFHQSRFAGSELC  182 (190)
Q Consensus       147 ~N~----------------~l~l~~N~l~g~~p~~~-~~~~l~~~~~~~n~l~  182 (190)
                      +|.                +|++++|.+.+.+|+.+ .+..+..+.+..+.+.
T Consensus       262 ~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~~L~~L~~l~l~~~~~~  314 (328)
T 4fcg_A          262 DCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPHLQA  314 (328)
T ss_dssp             TCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCGGGGGSCTTCEEECCGGGSC
T ss_pred             CCCchhhcchhhhcCCCCCEEeCCCCCchhhccHHHhhccCceEEeCCHHHHH
Confidence            986                89999999999999988 7888888888777444

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=99.88  E-value=4.1e-22  Score=150.18  Aligned_cols=179  Identities=16%  Similarity=0.103  Sum_probs=119.7

Q ss_pred             CCcceeccCCccccCCCcccCCCCCCcEEEcccCcccCcCCccccCCCCccEEeccCCcccCCCcHHHHHHHHHHHhh--
Q 039561            1 MLQQGLKIQHKFSRSFPTSTGALSSLESLHLHRNHLSGAIPLSLQNGTHFEVLDLRENAFIRDVPKWIKKSLLALFMM--   78 (190)
Q Consensus         1 ~L~~L~l~~n~l~~~~p~~l~~l~~L~~l~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~~~~~l~~~--   78 (190)
                      +|++|++++|.+++..+..+..+++|++|++++|.++...+..+..+++|++|++++|.+.+..+..+.. +++|..+  
T Consensus        29 ~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~-l~~L~~L~l  107 (276)
T 2z62_A           29 STKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSG-LSSLQKLVA  107 (276)
T ss_dssp             TCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTT-CTTCCEEEC
T ss_pred             CccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcC-CccccEEEC
Confidence            3788999999999866668899999999999999998656667888999999999999987655554443 3333222  


Q ss_pred             -----cCCcccccCCCCCCcEEEccCCeecc-cCCccCCCCCCCcEEEcccCcceeccCccccCCCCCC----EEeCCCC
Q 039561           79 -----KGKAFEYSTNLNVLRVIELSKNNFLG-EIAKGVTNPGASQTLNLSQNSFSRTIPESIGSMKSLE----SIDFSAN  148 (190)
Q Consensus        79 -----~~~~~~~~~~~~~L~~L~l~~n~l~~-~~p~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~----~l~l~~N  148 (190)
                           ....+..++.+++|++|++++|.+.+ .+|..++.+++|+.|++++|.+++..+..+..+++|+    .+++++|
T Consensus       108 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~l~l~L~ls~n  187 (276)
T 2z62_A          108 VETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLN  187 (276)
T ss_dssp             TTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCEEEECCSS
T ss_pred             CCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcCCHHHhhhhhhccccceeeecCCC
Confidence                 11112235556666777776666654 2466666666777777777766655455555444444    5666666


Q ss_pred             c---------------eEEeecccccccCCccc-cccccccccccCCc
Q 039561          149 H---------------YLNLSNNNLTGEIPSGI-QLQGFHQSRFAGSE  180 (190)
Q Consensus       149 ~---------------~l~l~~N~l~g~~p~~~-~~~~l~~~~~~~n~  180 (190)
                      .               +|++++|.+++..+..+ .+.+++.+.+++|.
T Consensus       188 ~l~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~  235 (276)
T 2z62_A          188 PMNFIQPGAFKEIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNP  235 (276)
T ss_dssp             CCCEECTTSSCSCCEEEEECCSSCCSCCCTTTTTTCCSCCEEECCSSC
T ss_pred             cccccCccccCCCcccEEECCCCceeecCHhHhcccccccEEEccCCc
Confidence            5               56777777763323222 46667777777773

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=99.88  E-value=1.2e-21  Score=147.37  Aligned_cols=160  Identities=18%  Similarity=0.154  Sum_probs=117.0

Q ss_pred             CcceeccCCccccCCCcccCCCCCCcEEEcccCcccCcCCccccCCCCccEEeccCCcccCCCcHHHHHHHHHHHhhcCC
Q 039561            2 LQQGLKIQHKFSRSFPTSTGALSSLESLHLHRNHLSGAIPLSLQNGTHFEVLDLRENAFIRDVPKWIKKSLLALFMMKGK   81 (190)
Q Consensus         2 L~~L~l~~n~l~~~~p~~l~~l~~L~~l~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~~~~~l~~~~~~   81 (190)
                      +++|++++|.++...+..+..+++|++|++++|.++...+..|..+++|++|++++|.+....+..+             
T Consensus        39 l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~-------------  105 (270)
T 2o6q_A           39 TKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKLQALPIGVF-------------  105 (270)
T ss_dssp             CSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECCSSCCCCCCTTTT-------------
T ss_pred             CCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECCCCcCCcCCHhHc-------------
Confidence            5677788888777555577778888888888888774333445667788888888887654333333             


Q ss_pred             cccccCCCCCCcEEEccCCeecccCCccCCCCCCCcEEEcccCcceeccCccccCCCCCCEEeCCCCc------------
Q 039561           82 AFEYSTNLNVLRVIELSKNNFLGEIAKGVTNPGASQTLNLSQNSFSRTIPESIGSMKSLESIDFSANH------------  149 (190)
Q Consensus        82 ~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~l~l~~N~------------  149 (190)
                           ..+++|++|++++|.+.+..+..++.+++|++|++++|.+++..+..+..+++|+.|++++|.            
T Consensus       106 -----~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l  180 (270)
T 2o6q_A          106 -----DQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKL  180 (270)
T ss_dssp             -----TTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTC
T ss_pred             -----ccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCCccCHhHccCCcccceeEecCCcCcEeChhHhccC
Confidence                 337788888888888876656667788888888888888875555557778888888888875            


Q ss_pred             ----eEEeecccccccCCc-cc-cccccccccccCCc
Q 039561          150 ----YLNLSNNNLTGEIPS-GI-QLQGFHQSRFAGSE  180 (190)
Q Consensus       150 ----~l~l~~N~l~g~~p~-~~-~~~~l~~~~~~~n~  180 (190)
                          +|++++|.+++ +|. .+ .+.+++.+.+++|.
T Consensus       181 ~~L~~L~L~~N~l~~-~~~~~~~~l~~L~~L~l~~N~  216 (270)
T 2o6q_A          181 TELKTLKLDNNQLKR-VPEGAFDSLEKLKMLQLQENP  216 (270)
T ss_dssp             TTCCEEECCSSCCSC-CCTTTTTTCTTCCEEECCSSC
T ss_pred             CCcCEEECCCCcCCc-CCHHHhccccCCCEEEecCCC
Confidence                78889999984 444 34 67888889898883

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=99.88  E-value=6.4e-23  Score=171.08  Aligned_cols=182  Identities=14%  Similarity=0.158  Sum_probs=147.5

Q ss_pred             CCcceeccCCccccC-----------------CCcccC--CCCCCcEEEcccCcccCcCCccccCCCCccEEeccCCc-c
Q 039561            1 MLQQGLKIQHKFSRS-----------------FPTSTG--ALSSLESLHLHRNHLSGAIPLSLQNGTHFEVLDLRENA-F   60 (190)
Q Consensus         1 ~L~~L~l~~n~l~~~-----------------~p~~l~--~l~~L~~l~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~-~   60 (190)
                      .|++|++++|.+++.                 +|+.++  ++++|++|++++|.+.+.+|..+..+++|++|++++|. +
T Consensus       207 ~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~l  286 (636)
T 4eco_A          207 KLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGI  286 (636)
T ss_dssp             TCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCCEEECTTCTTS
T ss_pred             CCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChHHHhcCCCCCEEECcCCCCC
Confidence            478999999999996                 899999  99999999999999999999999999999999999998 8


Q ss_pred             cC-CCcHHHHHHH------HHHHhhc------CCccc--ccCCCCCCcEEEccCCeecccCCccCCCCCCCcEEEcccCc
Q 039561           61 IR-DVPKWIKKSL------LALFMMK------GKAFE--YSTNLNVLRVIELSKNNFLGEIAKGVTNPGASQTLNLSQNS  125 (190)
Q Consensus        61 ~~-~~p~~~~~~~------~~l~~~~------~~~~~--~~~~~~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~  125 (190)
                      .+ .+|..+.. +      ++|..+.      ..+|.  .++.+++|++|++++|.+.|.+| .++.+++|+.|++++|.
T Consensus       287 ~~~~lp~~~~~-L~~~~~l~~L~~L~L~~n~l~~ip~~~~l~~l~~L~~L~L~~N~l~g~ip-~~~~l~~L~~L~L~~N~  364 (636)
T 4eco_A          287 SGEQLKDDWQA-LADAPVGEKIQIIYIGYNNLKTFPVETSLQKMKKLGMLECLYNQLEGKLP-AFGSEIKLASLNLAYNQ  364 (636)
T ss_dssp             CHHHHHHHHHH-HHHSGGGGTCCEEECCSSCCSSCCCHHHHTTCTTCCEEECCSCCCEEECC-CCEEEEEESEEECCSSE
T ss_pred             ccccchHHHHh-hhccccCCCCCEEECCCCcCCccCchhhhccCCCCCEEeCcCCcCccchh-hhCCCCCCCEEECCCCc
Confidence            87 78887764 4      4443321      15666  78888889999999999888888 78888888888888888


Q ss_pred             ceeccCccccCCCC-CCEEeCCCCc-----------------eEEeecccccccCCcccc--------ccccccccccCC
Q 039561          126 FSRTIPESIGSMKS-LESIDFSANH-----------------YLNLSNNNLTGEIPSGIQ--------LQGFHQSRFAGS  179 (190)
Q Consensus       126 l~~~~p~~l~~l~~-L~~l~l~~N~-----------------~l~l~~N~l~g~~p~~~~--------~~~l~~~~~~~n  179 (190)
                      ++ .+|..+..+++ |+.|++++|.                 ++++++|.+++.+|..+.        ..+++.+.+++|
T Consensus       365 l~-~lp~~l~~l~~~L~~L~Ls~N~l~~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N  443 (636)
T 4eco_A          365 IT-EIPANFCGFTEQVENLSFAHNKLKYIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNN  443 (636)
T ss_dssp             EE-ECCTTSEEECTTCCEEECCSSCCSSCCSCCCTTCSSCEEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEECCSS
T ss_pred             cc-cccHhhhhhcccCcEEEccCCcCcccchhhhhcccCccCEEECcCCcCCCcchhhhcccccccccCCCCCEEECcCC
Confidence            88 77888888888 8888888885                 678888888877666442        346777777777


Q ss_pred             cccCCC
Q 039561          180 ELCGAP  185 (190)
Q Consensus       180 ~l~~~~  185 (190)
                      .+...|
T Consensus       444 ~l~~lp  449 (636)
T 4eco_A          444 QISKFP  449 (636)
T ss_dssp             CCCSCC
T ss_pred             ccCcCC
Confidence            666555

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=99.88  E-value=7.2e-22  Score=149.49  Aligned_cols=184  Identities=20%  Similarity=0.189  Sum_probs=141.8

Q ss_pred             CCcceeccCCccccCCCcccCCCCCCcEEEcccCc-ccCcCCccccCCCCccEEeccCCcccCCCcHHHHHHHHHHHhh-
Q 039561            1 MLQQGLKIQHKFSRSFPTSTGALSSLESLHLHRNH-LSGAIPLSLQNGTHFEVLDLRENAFIRDVPKWIKKSLLALFMM-   78 (190)
Q Consensus         1 ~L~~L~l~~n~l~~~~p~~l~~l~~L~~l~l~~n~-~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~~~~~l~~~-   78 (190)
                      .|++|++++|.+++..|..+..+++|++|++++|. ++...+..+..+++|++|++++|.+.+..|..+. .+++|..+ 
T Consensus        57 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~-~l~~L~~L~  135 (285)
T 1ozn_A           57 NLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFR-GLAALQYLY  135 (285)
T ss_dssp             TCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTT-TCTTCCEEE
T ss_pred             CCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCCccccCHHHhcCCcCCCEEECCCCcCCEECHhHhh-CCcCCCEEE
Confidence            37889999999998778889999999999999997 7755577788899999999999998766565544 25555333 


Q ss_pred             ------cCCcccccCCCCCCcEEEccCCeecccCCccCCCCCCCcEEEcccCcceeccCccccCCCCCCEEeCCCCc---
Q 039561           79 ------KGKAFEYSTNLNVLRVIELSKNNFLGEIAKGVTNPGASQTLNLSQNSFSRTIPESIGSMKSLESIDFSANH---  149 (190)
Q Consensus        79 ------~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~l~l~~N~---  149 (190)
                            ....+..++.+++|++|++++|.+++..+..+..+++|+.|++++|.+++..|..+..+++|+.|++++|.   
T Consensus       136 l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~  215 (285)
T 1ozn_A          136 LQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSA  215 (285)
T ss_dssp             CCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSC
T ss_pred             CCCCcccccCHhHhccCCCccEEECCCCcccccCHHHhcCccccCEEECCCCcccccCHhHccCcccccEeeCCCCcCCc
Confidence                  12223457789999999999999986656679999999999999999998889999999999999999997   


Q ss_pred             -------------eEEeecccccccCCccccccccccccccCC-cccCCC
Q 039561          150 -------------YLNLSNNNLTGEIPSGIQLQGFHQSRFAGS-ELCGAP  185 (190)
Q Consensus       150 -------------~l~l~~N~l~g~~p~~~~~~~l~~~~~~~n-~l~~~~  185 (190)
                                   ++++++|++.+..+.......++......+ ..|..|
T Consensus       216 ~~~~~~~~l~~L~~L~l~~N~~~c~~~~~~~~~~l~~~~~~~~~~~c~~p  265 (285)
T 1ozn_A          216 LPTEALAPLRALQYLRLNDNPWVCDCRARPLWAWLQKFRGSSSEVPCSLP  265 (285)
T ss_dssp             CCHHHHTTCTTCCEEECCSSCEECSGGGHHHHHHHHHCCSEECCCBEEES
T ss_pred             CCHHHcccCcccCEEeccCCCccCCCCcHHHHHHHHhcccccCccccCCc
Confidence                         799999999865444322233444444444 334443

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=99.87  E-value=4.5e-22  Score=151.98  Aligned_cols=179  Identities=18%  Similarity=0.196  Sum_probs=124.3

Q ss_pred             CcceeccCCccccC--CCcccCCCCCCcEEEcccCcccCcCCccccCCCCccEEeccCCcccCCCc-HHHHHHHHHHHhh
Q 039561            2 LQQGLKIQHKFSRS--FPTSTGALSSLESLHLHRNHLSGAIPLSLQNGTHFEVLDLRENAFIRDVP-KWIKKSLLALFMM   78 (190)
Q Consensus         2 L~~L~l~~n~l~~~--~p~~l~~l~~L~~l~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p-~~~~~~~~~l~~~   78 (190)
                      |++|++++|.++..  .+..+..+++|++|++++|.++ .+|..+..+++|++|++++|.+.+..+ ..+. .+++|..+
T Consensus        54 L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~-~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~-~l~~L~~L  131 (306)
T 2z66_A           54 LTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFL-SLRNLIYL  131 (306)
T ss_dssp             CSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCSCSEE-EEEEEEETCTTCCEEECTTSEEESSTTTTTTT-TCTTCCEE
T ss_pred             CCEEECCCCccCcccCcccccccccccCEEECCCCccc-cChhhcCCCCCCCEEECCCCcccccccchhhh-hccCCCEE
Confidence            56666666666532  2344455666666666666666 455555666666666666666544322 1221 13333222


Q ss_pred             -------cCCcccccCCCCCCcEEEccCCeecc-cCCccCCCCCCCcEEEcccCcceeccCccccCCCCCCEEeCCCCc-
Q 039561           79 -------KGKAFEYSTNLNVLRVIELSKNNFLG-EIAKGVTNPGASQTLNLSQNSFSRTIPESIGSMKSLESIDFSANH-  149 (190)
Q Consensus        79 -------~~~~~~~~~~~~~L~~L~l~~n~l~~-~~p~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~l~l~~N~-  149 (190)
                             ....+..+..+++|++|++++|.+.+ .+|..+..+++|+.|++++|.+++..|..+..+++|+.|++++|. 
T Consensus       132 ~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l  211 (306)
T 2z66_A          132 DISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNF  211 (306)
T ss_dssp             ECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCC
T ss_pred             ECCCCcCCccchhhcccCcCCCEEECCCCccccccchhHHhhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCcc
Confidence                   11233445668899999999999875 578888889999999999999987778888889999999999986 


Q ss_pred             ---------------eEEeecccccccCCccc-cc-cccccccccCCccc
Q 039561          150 ---------------YLNLSNNNLTGEIPSGI-QL-QGFHQSRFAGSELC  182 (190)
Q Consensus       150 ---------------~l~l~~N~l~g~~p~~~-~~-~~l~~~~~~~n~l~  182 (190)
                                     +||+++|.+++..|..+ .+ .+++.+++++|.+.
T Consensus       212 ~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~L~~N~~~  261 (306)
T 2z66_A          212 FSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFA  261 (306)
T ss_dssp             SBCCSGGGTTCTTCCEEECTTSCCCBCSSSSCCCCCTTCCEEECTTCCEE
T ss_pred             CccChhhccCcccCCEeECCCCCCcccCHHHHHhhhccCCEEEccCCCee
Confidence                           79999999998888776 45 58999999999553

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=99.87  E-value=4.3e-22  Score=159.57  Aligned_cols=94  Identities=18%  Similarity=0.268  Sum_probs=47.6

Q ss_pred             CcEEEccCCeecccCCccCCCCCCCcEEEcccCcceeccCccccCCCCCCEEeCCCCc----------------eEEeec
Q 039561           92 LRVIELSKNNFLGEIAKGVTNPGASQTLNLSQNSFSRTIPESIGSMKSLESIDFSANH----------------YLNLSN  155 (190)
Q Consensus        92 L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~l~l~~N~----------------~l~l~~  155 (190)
                      ++.|++++|.+.+..|..++.+++|+.|++++|.+++..|..+..+++|+.|++++|.                +|++++
T Consensus       277 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~  356 (455)
T 3v47_A          277 VKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSY  356 (455)
T ss_dssp             CCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGGTTCTTCCEEECCS
T ss_pred             ceEEEecCccccccchhhcccCCCCCEEECCCCcccccChhHhcCcccCCEEECCCCccCCcChhHhcCcccCCEEECCC
Confidence            4444444444443444445555555555555555554445555555555555555554                455555


Q ss_pred             ccccccCCccc-cccccccccccCCcccCCC
Q 039561          156 NNLTGEIPSGI-QLQGFHQSRFAGSELCGAP  185 (190)
Q Consensus       156 N~l~g~~p~~~-~~~~l~~~~~~~n~l~~~~  185 (190)
                      |.+++..|..+ .+.+++.+++++|.+.+.|
T Consensus       357 N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~  387 (455)
T 3v47_A          357 NHIRALGDQSFLGLPNLKELALDTNQLKSVP  387 (455)
T ss_dssp             SCCCEECTTTTTTCTTCCEEECCSSCCSCCC
T ss_pred             CcccccChhhccccccccEEECCCCccccCC
Confidence            55554444443 4455555555555444443

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=99.87  E-value=5.7e-22  Score=143.58  Aligned_cols=147  Identities=18%  Similarity=0.100  Sum_probs=123.8

Q ss_pred             CcceeccCCccccCCCcccCCCCCCcEEEcccCcccCcCCccccCCCCccEEeccCCcccCCCcHHHHHHHHHHHhhcCC
Q 039561            2 LQQGLKIQHKFSRSFPTSTGALSSLESLHLHRNHLSGAIPLSLQNGTHFEVLDLRENAFIRDVPKWIKKSLLALFMMKGK   81 (190)
Q Consensus         2 L~~L~l~~n~l~~~~p~~l~~l~~L~~l~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~~~~~l~~~~~~   81 (190)
                      |++|++++|.+++..+..+..+++|++|++++|.+++..+..|..+++|++|++++|.+.+..+..+.            
T Consensus        30 l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~------------   97 (208)
T 2o6s_A           30 TTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFD------------   97 (208)
T ss_dssp             CSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTT------------
T ss_pred             CcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCcCCccCHhHhc------------
Confidence            67899999999976566678999999999999999855455577889999999999997754333333            


Q ss_pred             cccccCCCCCCcEEEccCCeecccCCccCCCCCCCcEEEcccCcceeccCccccCCCCCCEEeCCCCc---------eEE
Q 039561           82 AFEYSTNLNVLRVIELSKNNFLGEIAKGVTNPGASQTLNLSQNSFSRTIPESIGSMKSLESIDFSANH---------YLN  152 (190)
Q Consensus        82 ~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~l~l~~N~---------~l~  152 (190)
                            .+++|++|++++|.+.+..+..+..+++|+.|++++|.+++..+..+..+++|+.+++++|.         +++
T Consensus        98 ------~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~~l~~L~  171 (208)
T 2o6s_A           98 ------KLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDCTCPGIRYLS  171 (208)
T ss_dssp             ------TCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCCCTTTTHHHH
T ss_pred             ------CccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCCCeecCCCCHHHHH
Confidence                  38999999999999986656668899999999999999996666668999999999999997         788


Q ss_pred             eecccccccCCccc
Q 039561          153 LSNNNLTGEIPSGI  166 (190)
Q Consensus       153 l~~N~l~g~~p~~~  166 (190)
                      ++.|.++|.+|+.+
T Consensus       172 ~~~n~~~g~ip~~~  185 (208)
T 2o6s_A          172 EWINKHSGVVRNSA  185 (208)
T ss_dssp             HHHHHCTTTBBCTT
T ss_pred             HHHHhCCceeeccC
Confidence            99999999999876

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=99.87  E-value=3.2e-21  Score=143.55  Aligned_cols=160  Identities=16%  Similarity=0.162  Sum_probs=136.7

Q ss_pred             CcceeccCCccccCCCcccCCCCCCcEEEcccCcccCcCCccccCCCCccEEeccCCcccCCCcHHHHHHHHHHHhhcCC
Q 039561            2 LQQGLKIQHKFSRSFPTSTGALSSLESLHLHRNHLSGAIPLSLQNGTHFEVLDLRENAFIRDVPKWIKKSLLALFMMKGK   81 (190)
Q Consensus         2 L~~L~l~~n~l~~~~p~~l~~l~~L~~l~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~~~~~l~~~~~~   81 (190)
                      .++++++++.++. +|..+.  +.++.|++++|.+++..+..+..+++|++|++++|.+.+..+..+..           
T Consensus        16 ~~~l~~~~~~l~~-~p~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~-----------   81 (251)
T 3m19_A           16 KKEVDCQGKSLDS-VPSGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDD-----------   81 (251)
T ss_dssp             GTEEECTTCCCSS-CCSCCC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTT-----------
T ss_pred             CeEEecCCCCccc-cCCCCC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhcc-----------
Confidence            3568899999986 776665  68999999999999777778999999999999999988765554544           


Q ss_pred             cccccCCCCCCcEEEccCCeecccCCccCCCCCCCcEEEcccCcceeccCccccCCCCCCEEeCCCCc------------
Q 039561           82 AFEYSTNLNVLRVIELSKNNFLGEIAKGVTNPGASQTLNLSQNSFSRTIPESIGSMKSLESIDFSANH------------  149 (190)
Q Consensus        82 ~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~l~l~~N~------------  149 (190)
                             +++|++|++++|.+.+..+..+..+++|++|++++|.+++..+..+..+++|+.|++++|.            
T Consensus        82 -------l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l  154 (251)
T 3m19_A           82 -------LTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKL  154 (251)
T ss_dssp             -------CTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTC
T ss_pred             -------CCcCCEEECCCCcccccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcC
Confidence                   8999999999999996666788999999999999999996666668899999999999997            


Q ss_pred             ----eEEeecccccccCCccc-cccccccccccCCccc
Q 039561          150 ----YLNLSNNNLTGEIPSGI-QLQGFHQSRFAGSELC  182 (190)
Q Consensus       150 ----~l~l~~N~l~g~~p~~~-~~~~l~~~~~~~n~l~  182 (190)
                          +|++++|.+++..|..+ .+.+++.+.+++|.+.
T Consensus       155 ~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~  192 (251)
T 3m19_A          155 TNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQFD  192 (251)
T ss_dssp             TTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBC
T ss_pred             cCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCcee
Confidence                89999999995555455 7889999999999554

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=99.87  E-value=1.7e-21  Score=148.16  Aligned_cols=156  Identities=21%  Similarity=0.234  Sum_probs=100.8

Q ss_pred             CcceeccCCccccCCCcccCCCCCCcEEEcccCcccCcCCccccCCCCccEEeccCCcccCCCcHHHHHHHHHHHhhcCC
Q 039561            2 LQQGLKIQHKFSRSFPTSTGALSSLESLHLHRNHLSGAIPLSLQNGTHFEVLDLRENAFIRDVPKWIKKSLLALFMMKGK   81 (190)
Q Consensus         2 L~~L~l~~n~l~~~~p~~l~~l~~L~~l~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~~~~~l~~~~~~   81 (190)
                      +++|++++|.+++..+..+..+++|++|++++|.++ .++.. ..+++|++|++++|.+. .+|.               
T Consensus        33 l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~-~~l~~L~~L~Ls~N~l~-~l~~---------------   94 (290)
T 1p9a_G           33 TTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELT-KLQVD-GTLPVLGTLDLSHNQLQ-SLPL---------------   94 (290)
T ss_dssp             CCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCC-EEECC-SCCTTCCEEECCSSCCS-SCCC---------------
T ss_pred             CCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccC-cccCC-CCCCcCCEEECCCCcCC-cCch---------------
Confidence            344555555555444444555555555555555555 22221 34555555555555543 2333               


Q ss_pred             cccccCCCCCCcEEEccCCeecccCCccCCCCCCCcEEEcccCcceeccCccccCCCCCCEEeCCCCc------------
Q 039561           82 AFEYSTNLNVLRVIELSKNNFLGEIAKGVTNPGASQTLNLSQNSFSRTIPESIGSMKSLESIDFSANH------------  149 (190)
Q Consensus        82 ~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~l~l~~N~------------  149 (190)
                         .+..+++|++|++++|++++..+..+..+++|+.|++++|.+++..+..+..+++|+.|++++|+            
T Consensus        95 ---~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l  171 (290)
T 1p9a_G           95 ---LGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGL  171 (290)
T ss_dssp             ---CTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSCCCTTTTTTC
T ss_pred             ---hhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEECCCCcCCccCHHHhcCc
Confidence               33447788888888888875555677788888888888888875555566777888888888776            


Q ss_pred             ----eEEeecccccccCCccc-cccccccccccCC
Q 039561          150 ----YLNLSNNNLTGEIPSGI-QLQGFHQSRFAGS  179 (190)
Q Consensus       150 ----~l~l~~N~l~g~~p~~~-~~~~l~~~~~~~n  179 (190)
                          +|++++|.++ .+|..+ ....++.+.+.+|
T Consensus       172 ~~L~~L~L~~N~l~-~ip~~~~~~~~L~~l~L~~N  205 (290)
T 1p9a_G          172 ENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGN  205 (290)
T ss_dssp             TTCCEEECCSSCCC-CCCTTTTTTCCCSEEECCSC
T ss_pred             CCCCEEECCCCcCC-ccChhhcccccCCeEEeCCC
Confidence                6888888887 677665 6667888888888

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=99.86  E-value=2e-21  Score=146.26  Aligned_cols=162  Identities=20%  Similarity=0.127  Sum_probs=107.9

Q ss_pred             CcceeccCCccccCCCcccCCCCCCcEEEcccCcccCcCCccccCCCCccEEeccCCcccCCCcHHHHHHHHHHHhh---
Q 039561            2 LQQGLKIQHKFSRSFPTSTGALSSLESLHLHRNHLSGAIPLSLQNGTHFEVLDLRENAFIRDVPKWIKKSLLALFMM---   78 (190)
Q Consensus         2 L~~L~l~~n~l~~~~p~~l~~l~~L~~l~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~~~~~l~~~---   78 (190)
                      |++|++++|.+++ + +.+..+++|++|++++|.+++..+..+..+++|++|++++|.+.+..+..+.. +++|..+   
T Consensus        65 L~~L~l~~n~l~~-~-~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~-l~~L~~L~L~  141 (272)
T 3rfs_A           65 VRYLALGGNKLHD-I-SALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDK-LTNLTYLNLA  141 (272)
T ss_dssp             CCEEECTTSCCCC-C-GGGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTT-CTTCCEEECC
T ss_pred             CcEEECCCCCCCC-c-hhhcCCCCCCEEECCCCccCccChhHhcCCcCCCEEECCCCcCCccCHHHhcc-CCCCCEEECC
Confidence            6778888888776 3 36778888888888888888555555677788888888888876544443332 3333222   


Q ss_pred             ----cCCcccccCCCCCCcEEEccCCeecccCCccCCCCCCCcEEEcccCcceeccCccccCCCCCCEEeCCCCc-----
Q 039561           79 ----KGKAFEYSTNLNVLRVIELSKNNFLGEIAKGVTNPGASQTLNLSQNSFSRTIPESIGSMKSLESIDFSANH-----  149 (190)
Q Consensus        79 ----~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~l~l~~N~-----  149 (190)
                          ....+..++.+++|++|++++|++++..+..++.+++|+.|++++|.+++..+..+..+++|+.+++++|.     
T Consensus       142 ~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~  221 (272)
T 3rfs_A          142 HNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDCTC  221 (272)
T ss_dssp             SSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCT
T ss_pred             CCccCccCHHHhccCccCCEEECCCCCcCccCHHHhcCCccCCEEECCCCcCCccCHHHHhCCcCCCEEEccCCCccccC
Confidence                11112234556777777777777775555556677777777777777776555566777777777777775     


Q ss_pred             ----eEEeecccccccCCccc
Q 039561          150 ----YLNLSNNNLTGEIPSGI  166 (190)
Q Consensus       150 ----~l~l~~N~l~g~~p~~~  166 (190)
                          ++++..|.++|.+|..+
T Consensus       222 ~~l~~l~~~~n~~~g~ip~~~  242 (272)
T 3rfs_A          222 PGIRYLSEWINKHSGVVRNSA  242 (272)
T ss_dssp             TTTHHHHHHHHHTGGGBBCTT
T ss_pred             cHHHHHHHHHHhCCCcccCcc
Confidence                56667777777777664

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=99.86  E-value=8.4e-21  Score=142.89  Aligned_cols=159  Identities=19%  Similarity=0.168  Sum_probs=117.8

Q ss_pred             CCcceeccCCccccCCCcccCCCCCCcEEEcccCcccCcCCccccCCCCccEEeccCCcccCCCcHHHHHHHHHHHhhcC
Q 039561            1 MLQQGLKIQHKFSRSFPTSTGALSSLESLHLHRNHLSGAIPLSLQNGTHFEVLDLRENAFIRDVPKWIKKSLLALFMMKG   80 (190)
Q Consensus         1 ~L~~L~l~~n~l~~~~p~~l~~l~~L~~l~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~~~~~l~~~~~   80 (190)
                      .|++|++++|.++. ++ .+..+++|++|++++|.+++ ++ .+..+++|++|++++|.+.+..+..+..          
T Consensus        42 ~L~~L~l~~~~i~~-~~-~l~~l~~L~~L~l~~n~l~~-~~-~l~~l~~L~~L~L~~n~l~~~~~~~~~~----------  107 (272)
T 3rfs_A           42 SIDQIIANNSDIKS-VQ-GIQYLPNVRYLALGGNKLHD-IS-ALKELTNLTYLILTGNQLQSLPNGVFDK----------  107 (272)
T ss_dssp             TCCEEECTTSCCCC-CT-TGGGCTTCCEEECTTSCCCC-CG-GGTTCTTCCEEECTTSCCCCCCTTTTTT----------
T ss_pred             ceeeeeeCCCCccc-cc-ccccCCCCcEEECCCCCCCC-ch-hhcCCCCCCEEECCCCccCccChhHhcC----------
Confidence            36789999999885 33 68899999999999999984 44 6788999999999999987655544433          


Q ss_pred             CcccccCCCCCCcEEEccCCeecccCCccCCCCCCCcEEEcccCcceeccCccccCCCCCCEEeCCCCc-----------
Q 039561           81 KAFEYSTNLNVLRVIELSKNNFLGEIAKGVTNPGASQTLNLSQNSFSRTIPESIGSMKSLESIDFSANH-----------  149 (190)
Q Consensus        81 ~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~l~l~~N~-----------  149 (190)
                              +++|++|++++|.+.+..+..++.+++|++|++++|.+++..+..+..+++|+.|++++|.           
T Consensus       108 --------l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~  179 (272)
T 3rfs_A          108 --------LTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDK  179 (272)
T ss_dssp             --------CTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTT
T ss_pred             --------CcCCCEEECCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcCccCHHHhcC
Confidence                    6677777777777765555556677777777777777775555556677777777777775           


Q ss_pred             -----eEEeecccccccCCccc-cccccccccccCCcc
Q 039561          150 -----YLNLSNNNLTGEIPSGI-QLQGFHQSRFAGSEL  181 (190)
Q Consensus       150 -----~l~l~~N~l~g~~p~~~-~~~~l~~~~~~~n~l  181 (190)
                           +|++++|.+++..|..+ .+.+++.+.+++|.+
T Consensus       180 l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~  217 (272)
T 3rfs_A          180 LTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPW  217 (272)
T ss_dssp             CTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCB
T ss_pred             CccCCEEECCCCcCCccCHHHHhCCcCCCEEEccCCCc
Confidence                 67788888886555544 677888888888843

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=99.86  E-value=2.8e-22  Score=153.82  Aligned_cols=60  Identities=15%  Similarity=0.111  Sum_probs=28.4

Q ss_pred             CcceeccCCccccCCCccc--CCCCCCcEEEcccCcccCcCCccccCC-----CCccEEeccCCcccC
Q 039561            2 LQQGLKIQHKFSRSFPTST--GALSSLESLHLHRNHLSGAIPLSLQNG-----THFEVLDLRENAFIR   62 (190)
Q Consensus         2 L~~L~l~~n~l~~~~p~~l--~~l~~L~~l~l~~n~~~~~~~~~~~~l-----~~L~~L~l~~n~~~~   62 (190)
                      |++|++++|.+++.+|..+  ..+++|++|++++|.+++. |..+..+     ++|++|++++|.+.+
T Consensus        97 L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~  163 (312)
T 1wwl_A           97 LQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLN  163 (312)
T ss_dssp             CCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCC
T ss_pred             ccEEEccCCcccchhHHHHHHhcCCCccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCcc
Confidence            4445555555554444443  4455555555555555432 4333333     445555555554443

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=99.86  E-value=6.6e-21  Score=147.02  Aligned_cols=180  Identities=19%  Similarity=0.256  Sum_probs=116.3

Q ss_pred             CcceeccCCccccCCCcccCCCCCCcEEEcccCcccCcCCccccCCCCccEEeccCCcccCCCcHHHH------------
Q 039561            2 LQQGLKIQHKFSRSFPTSTGALSSLESLHLHRNHLSGAIPLSLQNGTHFEVLDLRENAFIRDVPKWIK------------   69 (190)
Q Consensus         2 L~~L~l~~n~l~~~~p~~l~~l~~L~~l~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~------------   69 (190)
                      +++|++++|.+++..+..++.+++|++|++++|.+++..|..+..+++|++|++++|.+. .+|..+.            
T Consensus        54 l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~~~L~~L~l~~n~  132 (330)
T 1xku_A           54 TALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLK-ELPEKMPKTLQELRVHENE  132 (330)
T ss_dssp             CCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCS-BCCSSCCTTCCEEECCSSC
T ss_pred             CeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECCCCcCC-ccChhhcccccEEECCCCc
Confidence            566777777777755556777777777777777777555667777777777777777654 2332211            


Q ss_pred             ---------HHHHHHHhhc---------CCcccccCCCCCCcEEEccCCeecccCCccCCCCCCCcEEEcccCcceeccC
Q 039561           70 ---------KSLLALFMMK---------GKAFEYSTNLNVLRVIELSKNNFLGEIAKGVTNPGASQTLNLSQNSFSRTIP  131 (190)
Q Consensus        70 ---------~~~~~l~~~~---------~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p  131 (190)
                               ..+++|..+.         +..+..+..+++|++|++++|.+. .+|..+.  ++|+.|++++|.+++..|
T Consensus       133 l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~-~l~~~~~--~~L~~L~l~~n~l~~~~~  209 (330)
T 1xku_A          133 ITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNIT-TIPQGLP--PSLTELHLDGNKITKVDA  209 (330)
T ss_dssp             CCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCC-SCCSSCC--TTCSEEECTTSCCCEECT
T ss_pred             ccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCccc-cCCcccc--ccCCEEECCCCcCCccCH
Confidence                     1122221110         122344555666777777776665 4454433  567777777777776666


Q ss_pred             ccccCCCCCCEEeCCCCc----------------eEEeecccccccCCccc-cccccccccccCCcccCCCC
Q 039561          132 ESIGSMKSLESIDFSANH----------------YLNLSNNNLTGEIPSGI-QLQGFHQSRFAGSELCGAPF  186 (190)
Q Consensus       132 ~~l~~l~~L~~l~l~~N~----------------~l~l~~N~l~g~~p~~~-~~~~l~~~~~~~n~l~~~~~  186 (190)
                      ..+..+++|+.|++++|.                +|++++|.++ .+|..+ .+.+++.+.+++|.+++.|.
T Consensus       210 ~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~i~~~~~  280 (330)
T 1xku_A          210 ASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNISAIGS  280 (330)
T ss_dssp             GGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCS-SCCTTTTTCSSCCEEECCSSCCCCCCT
T ss_pred             HHhcCCCCCCEEECCCCcCceeChhhccCCCCCCEEECCCCcCc-cCChhhccCCCcCEEECCCCcCCccCh
Confidence            777777778888887775                6778888877 677665 67777777777777766553

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=99.86  E-value=1.9e-21  Score=146.50  Aligned_cols=161  Identities=20%  Similarity=0.138  Sum_probs=121.9

Q ss_pred             CcceeccCCccccCCCcccCCCCCCcEEEcccCcccCcCCccccCCCCccEEeccCCcccCCCcHHHHHHHHHHHhh---
Q 039561            2 LQQGLKIQHKFSRSFPTSTGALSSLESLHLHRNHLSGAIPLSLQNGTHFEVLDLRENAFIRDVPKWIKKSLLALFMM---   78 (190)
Q Consensus         2 L~~L~l~~n~l~~~~p~~l~~l~~L~~l~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~~~~~l~~~---   78 (190)
                      |++|++++|.+++..+..+..+++|++|++++|.+++..+..+..+++|++|++++|.+.+..+..+. .+++|..+   
T Consensus        54 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~-~l~~L~~L~l~  132 (276)
T 2z62_A           54 LQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIG-HLKTLKELNVA  132 (276)
T ss_dssp             CSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTSCCCCSTTCCCT-TCTTCCEEECC
T ss_pred             CcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEEECCCCCccccCchhcc-cCCCCCEEECc
Confidence            67888888888876666788888899999999888866667788888888888888887654433332 24444332   


Q ss_pred             ----cC-CcccccCCCCCCcEEEccCCeecccCCccCCCCCCCc----EEEcccCcceeccCccccCCCCCCEEeCCCCc
Q 039561           79 ----KG-KAFEYSTNLNVLRVIELSKNNFLGEIAKGVTNPGASQ----TLNLSQNSFSRTIPESIGSMKSLESIDFSANH  149 (190)
Q Consensus        79 ----~~-~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~l~~L~----~L~l~~n~l~~~~p~~l~~l~~L~~l~l~~N~  149 (190)
                          .. .+|..+..+++|++|++++|++++..+..+..+..|+    .|++++|.+++..+..+ ...+|+.|++++|.
T Consensus       133 ~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~l~l~L~ls~n~l~~~~~~~~-~~~~L~~L~L~~n~  211 (276)
T 2z62_A          133 HNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAF-KEIRLKELALDTNQ  211 (276)
T ss_dssp             SSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCEEEECCSSCCCEECTTSS-CSCCEEEEECCSSC
T ss_pred             CCccceecCchhhccCCCCCEEECCCCCCCcCCHHHhhhhhhccccceeeecCCCcccccCcccc-CCCcccEEECCCCc
Confidence                11 2466778899999999999999876666776666666    89999999985444444 44589999999997


Q ss_pred             ----------------eEEeecccccccCCc
Q 039561          150 ----------------YLNLSNNNLTGEIPS  164 (190)
Q Consensus       150 ----------------~l~l~~N~l~g~~p~  164 (190)
                                      ++++++|++++..|.
T Consensus       212 l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~~  242 (276)
T 2z62_A          212 LKSVPDGIFDRLTSLQKIWLHTNPWDCSCPR  242 (276)
T ss_dssp             CSCCCTTTTTTCCSCCEEECCSSCBCCCTTT
T ss_pred             eeecCHhHhcccccccEEEccCCcccccCCc
Confidence                            799999999977664

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=99.86  E-value=1.7e-21  Score=156.15  Aligned_cols=100  Identities=20%  Similarity=0.164  Sum_probs=87.9

Q ss_pred             ccccCCCCCCcEEEccCCeecccCCccCCCCCCCcEEEcccCcceeccCccccCCCCCCEEeCCCCc-------------
Q 039561           83 FEYSTNLNVLRVIELSKNNFLGEIAKGVTNPGASQTLNLSQNSFSRTIPESIGSMKSLESIDFSANH-------------  149 (190)
Q Consensus        83 ~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~l~l~~N~-------------  149 (190)
                      +..++.+++|++|++++|.+.+..|..++.+++|+.|++++|.+++..|..+..+++|+.|++++|+             
T Consensus       292 ~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~  371 (455)
T 3v47_A          292 KSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLP  371 (455)
T ss_dssp             TTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGGTTCTTCCEEECCSSCCCEECTTTTTTCT
T ss_pred             hhhcccCCCCCEEECCCCcccccChhHhcCcccCCEEECCCCccCCcChhHhcCcccCCEEECCCCcccccChhhccccc
Confidence            4567789999999999999998878899999999999999999998778899999999999999997             


Q ss_pred             ---eEEeecccccccCCccc-cccccccccccCCccc
Q 039561          150 ---YLNLSNNNLTGEIPSGI-QLQGFHQSRFAGSELC  182 (190)
Q Consensus       150 ---~l~l~~N~l~g~~p~~~-~~~~l~~~~~~~n~l~  182 (190)
                         +|++++|.+++..+..+ .+.+++.+++++|.+.
T Consensus       372 ~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~  408 (455)
T 3v47_A          372 NLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWD  408 (455)
T ss_dssp             TCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred             cccEEECCCCccccCCHhHhccCCcccEEEccCCCcc
Confidence               89999999995434343 7899999999999554

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=99.85  E-value=1.6e-21  Score=166.91  Aligned_cols=181  Identities=15%  Similarity=0.128  Sum_probs=143.6

Q ss_pred             CCcceeccCCcccc-----------------CCCcccC--CCCCCcEEEcccCcccCcCCccccCCCCccEEeccCCc-c
Q 039561            1 MLQQGLKIQHKFSR-----------------SFPTSTG--ALSSLESLHLHRNHLSGAIPLSLQNGTHFEVLDLRENA-F   60 (190)
Q Consensus         1 ~L~~L~l~~n~l~~-----------------~~p~~l~--~l~~L~~l~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~-~   60 (190)
                      .|++|++++|.+++                 .+|+.++  ++++|++|++++|.+.+.+|..+..+++|+.|++++|. +
T Consensus       449 ~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N~~l  528 (876)
T 4ecn_A          449 KLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGI  528 (876)
T ss_dssp             TCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCEEECTTCTTS
T ss_pred             CCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccChHHHhCCCCCCEEECcCCCCc
Confidence            47899999999999                 3898888  99999999999999998999999999999999999998 8


Q ss_pred             cC-CCcHHHHHHHH-------HHHhhc------CCccc--ccCCCCCCcEEEccCCeecccCCccCCCCCCCcEEEcccC
Q 039561           61 IR-DVPKWIKKSLL-------ALFMMK------GKAFE--YSTNLNVLRVIELSKNNFLGEIAKGVTNPGASQTLNLSQN  124 (190)
Q Consensus        61 ~~-~~p~~~~~~~~-------~l~~~~------~~~~~--~~~~~~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n  124 (190)
                      .+ .+|..+.. +.       +|..+.      ..+|.  .++.+++|+.|++++|.+. .+| .++.+++|+.|++++|
T Consensus       529 sg~~iP~~i~~-L~~~~~~l~~L~~L~Ls~N~L~~ip~~~~l~~L~~L~~L~Ls~N~l~-~lp-~~~~L~~L~~L~Ls~N  605 (876)
T 4ecn_A          529 SAAQLKADWTR-LADDEDTGPKIQIFYMGYNNLEEFPASASLQKMVKLGLLDCVHNKVR-HLE-AFGTNVKLTDLKLDYN  605 (876)
T ss_dssp             CHHHHHHHHHH-HHHCTTTTTTCCEEECCSSCCCBCCCHHHHTTCTTCCEEECTTSCCC-BCC-CCCTTSEESEEECCSS
T ss_pred             ccccchHHHHh-hhhcccccCCccEEEeeCCcCCccCChhhhhcCCCCCEEECCCCCcc-cch-hhcCCCcceEEECcCC
Confidence            87 78887764 55       453321      15666  7888889999999999988 777 7888888999999999


Q ss_pred             cceeccCccccCCCC-CCEEeCCCCc-----------------eEEeecccccccCCccc------cccccccccccCCc
Q 039561          125 SFSRTIPESIGSMKS-LESIDFSANH-----------------YLNLSNNNLTGEIPSGI------QLQGFHQSRFAGSE  180 (190)
Q Consensus       125 ~l~~~~p~~l~~l~~-L~~l~l~~N~-----------------~l~l~~N~l~g~~p~~~------~~~~l~~~~~~~n~  180 (190)
                      .++ .+|..+..+++ |+.|++++|.                 .|++++|.++|.+|...      ...+++.+.+++|.
T Consensus       606 ~l~-~lp~~l~~l~~~L~~L~Ls~N~L~~lp~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~  684 (876)
T 4ecn_A          606 QIE-EIPEDFCAFTDQVEGLGFSHNKLKYIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNE  684 (876)
T ss_dssp             CCS-CCCTTSCEECTTCCEEECCSSCCCSCCSCCCTTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSSC
T ss_pred             ccc-cchHHHhhccccCCEEECcCCCCCcCchhhhccccCCCCEEECcCCcCCCccccchhhhccccCCCcCEEEccCCc
Confidence            888 78888888888 8888888885                 57888888877665422      22355566666665


Q ss_pred             ccCCC
Q 039561          181 LCGAP  185 (190)
Q Consensus       181 l~~~~  185 (190)
                      +...|
T Consensus       685 L~~lp  689 (876)
T 4ecn_A          685 IQKFP  689 (876)
T ss_dssp             CCSCC
T ss_pred             CCccC
Confidence            55444

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=99.85  E-value=1.1e-21  Score=152.81  Aligned_cols=185  Identities=17%  Similarity=0.170  Sum_probs=144.3

Q ss_pred             CCcceeccCCccccCCCcccCCCCCCcEEEcccCcccCcCCccccCCCCccEEeccCCcccCCCcHHHHHHHHHHHhhc-
Q 039561            1 MLQQGLKIQHKFSRSFPTSTGALSSLESLHLHRNHLSGAIPLSLQNGTHFEVLDLRENAFIRDVPKWIKKSLLALFMMK-   79 (190)
Q Consensus         1 ~L~~L~l~~n~l~~~~p~~l~~l~~L~~l~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~~~~~l~~~~-   79 (190)
                      .|++|++++|.+++..+..+..+++|++|++++|.+++..+..|..+++|++|++++|.+.+ +|......+++|..+. 
T Consensus        53 ~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~-~~~~~~~~l~~L~~L~L  131 (353)
T 2z80_A           53 AVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSN-LSSSWFKPLSSLTFLNL  131 (353)
T ss_dssp             TCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSS-CCHHHHTTCTTCSEEEC
T ss_pred             cCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCcCCc-CCHhHhCCCccCCEEEC
Confidence            37889999999998656689999999999999999996667788899999999999999775 5544222355554331 


Q ss_pred             -----CCccc--ccCCCCCCcEEEccCC-eecccCCccCCCCCCCcEEEcccCcceeccCccccCCCCCCEEeCCCCc--
Q 039561           80 -----GKAFE--YSTNLNVLRVIELSKN-NFLGEIAKGVTNPGASQTLNLSQNSFSRTIPESIGSMKSLESIDFSANH--  149 (190)
Q Consensus        80 -----~~~~~--~~~~~~~L~~L~l~~n-~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~l~l~~N~--  149 (190)
                           ..++.  .+..+++|++|++++| .+.+..+..++.+++|+.|++++|.+++..|..+..+++|+.|++++|.  
T Consensus       132 ~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~  211 (353)
T 2z80_A          132 LGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHI  211 (353)
T ss_dssp             TTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSCST
T ss_pred             CCCCCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCCcCccCHHHHhccccCCeecCCCCccc
Confidence                 12333  5778899999999998 4665556788899999999999999998888899999999999999886  


Q ss_pred             --------------eEEeecccccccCCc-------------------------------cc-cccccccccccCCcccC
Q 039561          150 --------------YLNLSNNNLTGEIPS-------------------------------GI-QLQGFHQSRFAGSELCG  183 (190)
Q Consensus       150 --------------~l~l~~N~l~g~~p~-------------------------------~~-~~~~l~~~~~~~n~l~~  183 (190)
                                    ++++++|.+++..+.                               .+ .+.+++.+++++|.++.
T Consensus       212 ~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~~~~l~~l~L~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N~l~~  291 (353)
T 2z80_A          212 LLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRNQLKS  291 (353)
T ss_dssp             THHHHHHHHTTTEEEEEEESCBCTTCCCC------CCCCCCEEEEESCBCCHHHHHHHHHHHHTCTTCCEEECCSSCCCC
T ss_pred             cchhhhhhhcccccEEECCCCccccccccccccccccchhhccccccccccCcchhhhHHHHhcccCCCEEECCCCCCCc
Confidence                          788888888753322                               22 45678888888887776


Q ss_pred             CCC
Q 039561          184 APF  186 (190)
Q Consensus       184 ~~~  186 (190)
                      .|.
T Consensus       292 i~~  294 (353)
T 2z80_A          292 VPD  294 (353)
T ss_dssp             CCT
T ss_pred             cCH
Confidence            663

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=99.85  E-value=1.8e-21  Score=149.33  Aligned_cols=180  Identities=22%  Similarity=0.330  Sum_probs=115.2

Q ss_pred             CcceeccCCccc-cCCCcccC-------CCCCCcEEEcccCcccCcCCccc--cCCCCccEEeccCCcccCCCcHHHHHH
Q 039561            2 LQQGLKIQHKFS-RSFPTSTG-------ALSSLESLHLHRNHLSGAIPLSL--QNGTHFEVLDLRENAFIRDVPKWIKKS   71 (190)
Q Consensus         2 L~~L~l~~n~l~-~~~p~~l~-------~l~~L~~l~l~~n~~~~~~~~~~--~~l~~L~~L~l~~n~~~~~~p~~~~~~   71 (190)
                      |++|++++|.+. ..+|..+.       ++++|++|++++|.+++..|..+  ..+++|++|++++|.+.+. |..+.. 
T Consensus        65 L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~-  142 (312)
T 1wwl_A           65 IKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATR-DAWLAE-  142 (312)
T ss_dssp             HHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESCBCSSS-SSHHHH-
T ss_pred             HhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHHHHHhcCCCccEEEccCCCCcch-hHHHHH-
Confidence            467888999884 44665554       78999999999999998888876  7899999999999998876 776654 


Q ss_pred             H-----HHHHhh-------cCCcccccCCCCCCcEEEccCCeeccc--CCccC--CCCCCCcEEEcccCccee--ccC-c
Q 039561           72 L-----LALFMM-------KGKAFEYSTNLNVLRVIELSKNNFLGE--IAKGV--TNPGASQTLNLSQNSFSR--TIP-E  132 (190)
Q Consensus        72 ~-----~~l~~~-------~~~~~~~~~~~~~L~~L~l~~n~l~~~--~p~~~--~~l~~L~~L~l~~n~l~~--~~p-~  132 (190)
                      +     ++|..+       .+..+..++.+++|++|++++|++.+.  ++..+  +.+++|++|++++|.+++  .++ .
T Consensus       143 l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~  222 (312)
T 1wwl_A          143 LQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSA  222 (312)
T ss_dssp             HHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHH
T ss_pred             HHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcchHHHHHH
Confidence            3     333221       122234555566666666666665433  22222  555666666666666652  111 2


Q ss_pred             cccCCCCCCEEeCCCCc-----------------eEEeecccccccCCccccccccccccccCCcccCCC
Q 039561          133 SIGSMKSLESIDFSANH-----------------YLNLSNNNLTGEIPSGIQLQGFHQSRFAGSELCGAP  185 (190)
Q Consensus       133 ~l~~l~~L~~l~l~~N~-----------------~l~l~~N~l~g~~p~~~~~~~l~~~~~~~n~l~~~~  185 (190)
                      .+..+++|+.|++++|.                 +|++++|.|+ .+|..+. .+++.+++++|.+.+.|
T Consensus       223 ~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~-~ip~~~~-~~L~~L~Ls~N~l~~~p  290 (312)
T 1wwl_A          223 LAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLK-QVPKGLP-AKLSVLDLSYNRLDRNP  290 (312)
T ss_dssp             HHHTTCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSCCS-SCCSSCC-SEEEEEECCSSCCCSCC
T ss_pred             HHhcCCCCCEEECCCCcCCcccchhhhhhcCCCCEEECCCCccC-hhhhhcc-CCceEEECCCCCCCCCh
Confidence            23455666666666664                 5666666666 5665544 56666666666666554

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=99.85  E-value=6.5e-21  Score=152.99  Aligned_cols=182  Identities=16%  Similarity=0.112  Sum_probs=131.9

Q ss_pred             CcceeccCCccccCCCcccCCCCCCcEEEcccCcccCcCCccccCCCCccEEeccCCcccCCCcHHHHHHHHHHHhhc--
Q 039561            2 LQQGLKIQHKFSRSFPTSTGALSSLESLHLHRNHLSGAIPLSLQNGTHFEVLDLRENAFIRDVPKWIKKSLLALFMMK--   79 (190)
Q Consensus         2 L~~L~l~~n~l~~~~p~~l~~l~~L~~l~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~~~~~l~~~~--   79 (190)
                      +++|++++|.+++..+..+..+++|++|++++|.+++..+..|..+++|++|++++|.+....+..+. .+++|..+.  
T Consensus        77 l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~-~l~~L~~L~L~  155 (452)
T 3zyi_A           77 TRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTVIPSGAFE-YLSKLRELWLR  155 (452)
T ss_dssp             CSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSBCCTTTSS-SCTTCCEEECC
T ss_pred             ccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCCcCCccChhhhc-ccCCCCEEECC
Confidence            67899999999987788899999999999999999866678888899999999999997654433333 234442221  


Q ss_pred             C----Cc-ccccCCCCCCcEEEccCC-eecccCCccCCCCCCCcEEEcccCcceeccCccccCCCCCCEEeCCCCc----
Q 039561           80 G----KA-FEYSTNLNVLRVIELSKN-NFLGEIAKGVTNPGASQTLNLSQNSFSRTIPESIGSMKSLESIDFSANH----  149 (190)
Q Consensus        80 ~----~~-~~~~~~~~~L~~L~l~~n-~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~l~l~~N~----  149 (190)
                      +    .+ +..+..+++|+.|++++| .+....+..+..+++|+.|++++|.++ .+| .+..+++|+.|++++|.    
T Consensus       156 ~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~-~~~-~~~~l~~L~~L~Ls~N~l~~~  233 (452)
T 3zyi_A          156 NNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIK-DMP-NLTPLVGLEELEMSGNHFPEI  233 (452)
T ss_dssp             SCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCS-SCC-CCTTCTTCCEEECTTSCCSEE
T ss_pred             CCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCccc-ccc-cccccccccEEECcCCcCccc
Confidence            1    11 224556677777777763 343222335677778888888888877 344 46777788888888886    


Q ss_pred             ------------eEEeecccccccCCccc-cccccccccccCCcccCCCC
Q 039561          150 ------------YLNLSNNNLTGEIPSGI-QLQGFHQSRFAGSELCGAPF  186 (190)
Q Consensus       150 ------------~l~l~~N~l~g~~p~~~-~~~~l~~~~~~~n~l~~~~~  186 (190)
                                  +|++++|.+++..|..+ .+.+|+.+++++|.+.+.|.
T Consensus       234 ~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~  283 (452)
T 3zyi_A          234 RPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPH  283 (452)
T ss_dssp             CGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCT
T ss_pred             CcccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCCccCh
Confidence                        78888888886666666 67888889999998877663

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=99.85  E-value=5.6e-21  Score=153.36  Aligned_cols=176  Identities=19%  Similarity=0.131  Sum_probs=143.4

Q ss_pred             CCcceeccCCccccCCCcccCCCCCCcEEEcccCcccCcCCccccCCCCccEEeccCCcccCCCcHHHHHHHHHHHhhcC
Q 039561            1 MLQQGLKIQHKFSRSFPTSTGALSSLESLHLHRNHLSGAIPLSLQNGTHFEVLDLRENAFIRDVPKWIKKSLLALFMMKG   80 (190)
Q Consensus         1 ~L~~L~l~~n~l~~~~p~~l~~l~~L~~l~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~~~~~l~~~~~   80 (190)
                      .|++|++++|.+++..+..+..+++|++|++++|.++...+..|..+++|++|++++|.+....+..+. .+++|..+.-
T Consensus       100 ~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~-~l~~L~~L~l  178 (452)
T 3zyi_A          100 HLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFN-RVPSLMRLDL  178 (452)
T ss_dssp             TCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSBCCTTTSSSCTTCCEEECCSCCCCEECTTTTT-TCTTCCEEEC
T ss_pred             CCCEEECCCCccCCcChhhccCcccCCEEECCCCcCCccChhhhcccCCCCEEECCCCCcceeCHhHHh-cCCcccEEeC
Confidence            378999999999997778899999999999999999955556688899999999999997643333332 3555533321


Q ss_pred             -------Cc-ccccCCCCCCcEEEccCCeecccCCccCCCCCCCcEEEcccCcceeccCccccCCCCCCEEeCCCCc---
Q 039561           81 -------KA-FEYSTNLNVLRVIELSKNNFLGEIAKGVTNPGASQTLNLSQNSFSRTIPESIGSMKSLESIDFSANH---  149 (190)
Q Consensus        81 -------~~-~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~l~l~~N~---  149 (190)
                             .+ +..+..+++|++|++++|++. .+| .+..+++|+.|++++|.+++..|..+..+++|+.|++++|.   
T Consensus       179 ~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~-~~~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~  256 (452)
T 3zyi_A          179 GELKKLEYISEGAFEGLFNLKYLNLGMCNIK-DMP-NLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSL  256 (452)
T ss_dssp             CCCTTCCEECTTTTTTCTTCCEEECTTSCCS-SCC-CCTTCTTCCEEECTTSCCSEECGGGGTTCTTCCEEECTTSCCCE
T ss_pred             CCCCCccccChhhccCCCCCCEEECCCCccc-ccc-cccccccccEEECcCCcCcccCcccccCccCCCEEEeCCCcCce
Confidence                   12 235778999999999999998 455 48889999999999999998888999999999999999997   


Q ss_pred             -------------eEEeecccccccCCccc-cccccccccccCC
Q 039561          150 -------------YLNLSNNNLTGEIPSGI-QLQGFHQSRFAGS  179 (190)
Q Consensus       150 -------------~l~l~~N~l~g~~p~~~-~~~~l~~~~~~~n  179 (190)
                                   +|++++|.+++..+..+ .+.+++.+.+++|
T Consensus       257 ~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N  300 (452)
T 3zyi_A          257 IERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHN  300 (452)
T ss_dssp             ECTTTTTTCTTCCEEECCSSCCSCCCTTSSTTCTTCCEEECCSS
T ss_pred             ECHHHhcCCCCCCEEECCCCcCCccChHHhccccCCCEEEccCC
Confidence                         89999999995444444 6889999999999

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=99.85  E-value=4.7e-21  Score=153.32  Aligned_cols=175  Identities=20%  Similarity=0.141  Sum_probs=112.7

Q ss_pred             CcceeccCCccccCCCcccCCCCCCcEEEcccCcccCcCCccccCCCCccEEeccCCcccCCCcHHHHHHHHHHHhhc--
Q 039561            2 LQQGLKIQHKFSRSFPTSTGALSSLESLHLHRNHLSGAIPLSLQNGTHFEVLDLRENAFIRDVPKWIKKSLLALFMMK--   79 (190)
Q Consensus         2 L~~L~l~~n~l~~~~p~~l~~l~~L~~l~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~~~~~l~~~~--   79 (190)
                      |++|++++|.++...+..+..+++|++|++++|.++...+..|..+++|++|++++|.+....+..+. .+++|..+.  
T Consensus        90 L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~-~l~~L~~L~l~  168 (440)
T 3zyj_A           90 LEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFN-RIPSLRRLDLG  168 (440)
T ss_dssp             CCEEECCSSCCCEECGGGGTTCSSCCEEECCSSCCSSCCTTTSCSCSSCCEEECCSCCCCEECTTTTT-TCTTCCEEECC
T ss_pred             CCEEECCCCcCCccChhhccCCccCCEEECCCCcCCeeCHhHhhccccCceeeCCCCcccccCHHHhh-hCcccCEeCCC
Confidence            44455555555543334455555555555555555533333455555555555555554432222222 233332221  


Q ss_pred             -----CCc-ccccCCCCCCcEEEccCCeecccCCccCCCCCCCcEEEcccCcceeccCccccCCCCCCEEeCCCCc----
Q 039561           80 -----GKA-FEYSTNLNVLRVIELSKNNFLGEIAKGVTNPGASQTLNLSQNSFSRTIPESIGSMKSLESIDFSANH----  149 (190)
Q Consensus        80 -----~~~-~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~l~l~~N~----  149 (190)
                           ..+ +..+..+++|++|++++|.+. .+|. +..+++|+.|++++|.+++..|..+..+++|+.|++++|.    
T Consensus       169 ~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~-~~~~-~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~  246 (440)
T 3zyj_A          169 ELKRLSYISEGAFEGLSNLRYLNLAMCNLR-EIPN-LTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVI  246 (440)
T ss_dssp             CCTTCCEECTTTTTTCSSCCEEECTTSCCS-SCCC-CTTCSSCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEE
T ss_pred             CCCCcceeCcchhhcccccCeecCCCCcCc-cccc-cCCCcccCEEECCCCccCccChhhhccCccCCEEECCCCceeEE
Confidence                 111 235667888888889888887 5564 7788899999999999987778889999999999999886    


Q ss_pred             ------------eEEeecccccccCCccc-cccccccccccCC
Q 039561          150 ------------YLNLSNNNLTGEIPSGI-QLQGFHQSRFAGS  179 (190)
Q Consensus       150 ------------~l~l~~N~l~g~~p~~~-~~~~l~~~~~~~n  179 (190)
                                  +|++++|.+++..+..+ .+.+++.+.+++|
T Consensus       247 ~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N  289 (440)
T 3zyj_A          247 ERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHN  289 (440)
T ss_dssp             CTTSSTTCTTCCEEECTTSCCCCCCTTTTSSCTTCCEEECCSS
T ss_pred             ChhhhcCCCCCCEEECCCCCCCccChhHhccccCCCEEEcCCC
Confidence                        78999999984444444 6788999999998

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=99.85  E-value=2.9e-21  Score=149.17  Aligned_cols=183  Identities=17%  Similarity=0.191  Sum_probs=123.7

Q ss_pred             CcceeccCCccccCCCcccCCCCCCcEEEcccCcccCcCCccccCCCCccEEeccCCcccCCCcHHHHHHHHHHHh----
Q 039561            2 LQQGLKIQHKFSRSFPTSTGALSSLESLHLHRNHLSGAIPLSLQNGTHFEVLDLRENAFIRDVPKWIKKSLLALFM----   77 (190)
Q Consensus         2 L~~L~l~~n~l~~~~p~~l~~l~~L~~l~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~~~~~l~~----   77 (190)
                      |++|++++|.+++..|..+..+++|++|++++|.+++..|..+..+++|++|++++|.+. .+|..+...++.|..    
T Consensus        56 l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~l~~~~~~~L~~L~l~~n~  134 (332)
T 2ft3_A           56 TTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNHLV-EIPPNLPSSLVELRIHDNR  134 (332)
T ss_dssp             CCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECCSSCCC-SCCSSCCTTCCEEECCSSC
T ss_pred             CeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECCCCcCC-ccCccccccCCEEECCCCc
Confidence            678888888888866678888999999999999988666778888889999999988865 455433211222211    


Q ss_pred             hcCCcccccCCCCCCcEEEccCCeecc--cCCccCCCC--------------------CCCcEEEcccCcceeccCcccc
Q 039561           78 MKGKAFEYSTNLNVLRVIELSKNNFLG--EIAKGVTNP--------------------GASQTLNLSQNSFSRTIPESIG  135 (190)
Q Consensus        78 ~~~~~~~~~~~~~~L~~L~l~~n~l~~--~~p~~~~~l--------------------~~L~~L~l~~n~l~~~~p~~l~  135 (190)
                      +....+..+..+++|+.|++++|.+..  ..+..+..+                    +.|+.|++++|.+++..+..+.
T Consensus       135 i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~L~~L~l~~n~l~~l~~~~~~~L~~L~l~~n~i~~~~~~~l~  214 (332)
T 2ft3_A          135 IRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGLKLNYLRISEAKLTGIPKDLPETLNELHLDHNKIQAIELEDLL  214 (332)
T ss_dssp             CCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSCCCSCCBCCSSBCSSCCSSSCSSCSCCBCCSSCCCCCCTTSST
T ss_pred             cCccCHhHhCCCccCCEEECCCCccccCCCCcccccCCccCEEECcCCCCCccCccccCCCCEEECCCCcCCccCHHHhc
Confidence            111122345667777777777777642  333333332                    3566666666666655556677


Q ss_pred             CCCCCCEEeCCCCc----------------eEEeecccccccCCccc-cccccccccccCCcccCCCC
Q 039561          136 SMKSLESIDFSANH----------------YLNLSNNNLTGEIPSGI-QLQGFHQSRFAGSELCGAPF  186 (190)
Q Consensus       136 ~l~~L~~l~l~~N~----------------~l~l~~N~l~g~~p~~~-~~~~l~~~~~~~n~l~~~~~  186 (190)
                      .+++|+.|++++|.                +|++++|.++ .+|..+ .+.+++.+.+++|.+.+.|.
T Consensus       215 ~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~l~~~~~  281 (332)
T 2ft3_A          215 RYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLS-RVPAGLPDLKLLQVVYLHTNNITKVGV  281 (332)
T ss_dssp             TCTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSCCC-BCCTTGGGCTTCCEEECCSSCCCBCCT
T ss_pred             CCCCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCCcCe-ecChhhhcCccCCEEECCCCCCCccCh
Confidence            77777777777775                6778888887 677765 67777788888777666553

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=99.85  E-value=1.1e-21  Score=163.72  Aligned_cols=171  Identities=16%  Similarity=0.251  Sum_probs=129.4

Q ss_pred             CCccccCCCcccCCCCCCcEEEcccCcccCc-----------------CCcccc--CCCCccEEeccCCcccCCCcHHHH
Q 039561            9 QHKFSRSFPTSTGALSSLESLHLHRNHLSGA-----------------IPLSLQ--NGTHFEVLDLRENAFIRDVPKWIK   69 (190)
Q Consensus         9 ~n~l~~~~p~~l~~l~~L~~l~l~~n~~~~~-----------------~~~~~~--~l~~L~~L~l~~n~~~~~~p~~~~   69 (190)
                      +|++++ +|+.++++++|++|++++|.+++.                 +|..+.  .+++|++|++++|.+.+.+|..+.
T Consensus       192 ~n~l~~-ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~  270 (636)
T 4eco_A          192 SNNITF-VSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLK  270 (636)
T ss_dssp             SCEEEE-ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTT
T ss_pred             cCCCcc-CCHHHhcccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChHHHh
Confidence            346677 898999999999999999999964                 899988  999999999999999999998776


Q ss_pred             HHHHHHHhh--------cC-CcccccCCC------CCCcEEEccCCeecccCCc--cCCCCCCCcEEEcccCcceeccCc
Q 039561           70 KSLLALFMM--------KG-KAFEYSTNL------NVLRVIELSKNNFLGEIAK--GVTNPGASQTLNLSQNSFSRTIPE  132 (190)
Q Consensus        70 ~~~~~l~~~--------~~-~~~~~~~~~------~~L~~L~l~~n~l~~~~p~--~~~~l~~L~~L~l~~n~l~~~~p~  132 (190)
                      . +++|..+        .+ .+|..++.+      ++|++|++++|.++ .+|.  .++.+++|++|++++|.++|.+| 
T Consensus       271 ~-l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~-~ip~~~~l~~l~~L~~L~L~~N~l~g~ip-  347 (636)
T 4eco_A          271 A-LPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLK-TFPVETSLQKMKKLGMLECLYNQLEGKLP-  347 (636)
T ss_dssp             T-CSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCS-SCCCHHHHTTCTTCCEEECCSCCCEEECC-
T ss_pred             c-CCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCC-ccCchhhhccCCCCCEEeCcCCcCccchh-
Confidence            4 4444322        12 344445444      77777888777777 6777  77777888888888888877777 


Q ss_pred             cccCCCCCCEEeCCCCc----------------eEEeecccccccCCcccc---ccccccccccCCcccCC
Q 039561          133 SIGSMKSLESIDFSANH----------------YLNLSNNNLTGEIPSGIQ---LQGFHQSRFAGSELCGA  184 (190)
Q Consensus       133 ~l~~l~~L~~l~l~~N~----------------~l~l~~N~l~g~~p~~~~---~~~l~~~~~~~n~l~~~  184 (190)
                      .+..+++|+.|++++|.                +|++++|.++ .+|+.+.   +.+++.+.+++|.+++.
T Consensus       348 ~~~~l~~L~~L~L~~N~l~~lp~~l~~l~~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~~  417 (636)
T 4eco_A          348 AFGSEIKLASLNLAYNQITEIPANFCGFTEQVENLSFAHNKLK-YIPNIFDAKSVSVMSAIDFSYNEIGSV  417 (636)
T ss_dssp             CCEEEEEESEEECCSSEEEECCTTSEEECTTCCEEECCSSCCS-SCCSCCCTTCSSCEEEEECCSSCTTTT
T ss_pred             hhCCCCCCCEEECCCCccccccHhhhhhcccCcEEEccCCcCc-ccchhhhhcccCccCEEECcCCcCCCc
Confidence            77777778877777775                5777777777 6777652   23677777777766653

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.85  E-value=2.6e-20  Score=154.33  Aligned_cols=79  Identities=19%  Similarity=0.238  Sum_probs=61.1

Q ss_pred             ccCCCCCCCcEEEcccCcceeccCccccCCCCCCEEeCCCCc---------------eEEeecccccccCCccc-ccccc
Q 039561          108 KGVTNPGASQTLNLSQNSFSRTIPESIGSMKSLESIDFSANH---------------YLNLSNNNLTGEIPSGI-QLQGF  171 (190)
Q Consensus       108 ~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~l~l~~N~---------------~l~l~~N~l~g~~p~~~-~~~~l  171 (190)
                      .+++.++.|+.|++++|.+++..|..+..+++|+.|++++|.               +|++++|.++ .+|..+ .+.+|
T Consensus       248 ~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~L~~L~Ls~N~l~-~i~~~~~~l~~L  326 (597)
T 3oja_B          248 AWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVALNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRL  326 (597)
T ss_dssp             GGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECTTSCCCEEECSSSCCTTCCEEECCSSCCC-CCGGGHHHHTTC
T ss_pred             hhhccCCCCCEEECCCCccCCCCHHHhcCccCCCEEECCCCCCCCCCcccccCCCCcEEECCCCCCC-ccCcccccCCCC
Confidence            345667788888888888887778888888888888888886               7888888888 677665 67888


Q ss_pred             ccccccCCcccCCCCC
Q 039561          172 HQSRFAGSELCGAPFP  187 (190)
Q Consensus       172 ~~~~~~~n~l~~~~~~  187 (190)
                      +.+++++|.+.+.|.+
T Consensus       327 ~~L~L~~N~l~~~~~~  342 (597)
T 3oja_B          327 ENLYLDHNSIVTLKLS  342 (597)
T ss_dssp             SEEECCSSCCCCCCCC
T ss_pred             CEEECCCCCCCCcChh
Confidence            8888888877766644

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=99.84  E-value=1.3e-20  Score=156.02  Aligned_cols=164  Identities=16%  Similarity=0.090  Sum_probs=138.2

Q ss_pred             CCcceeccCCccccCCCcccCCCCCCcEEEcccCcccCcCCccccCCCCccEEeccCCcccCCCcHHHHHHHHHHHhhcC
Q 039561            1 MLQQGLKIQHKFSRSFPTSTGALSSLESLHLHRNHLSGAIPLSLQNGTHFEVLDLRENAFIRDVPKWIKKSLLALFMMKG   80 (190)
Q Consensus         1 ~L~~L~l~~n~l~~~~p~~l~~l~~L~~l~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~~~~~l~~~~~   80 (190)
                      ++++|++++|.+++..+..+.++++|++|++++|.+++..|..|..+++|++|++++|.+.+..|..+..          
T Consensus        33 ~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~----------  102 (606)
T 3vq2_A           33 STKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSG----------  102 (606)
T ss_dssp             TCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCCCCTTSSTT----------
T ss_pred             CcCEEECCCCCcCEeChhhccCCccCcEEeCCCCcccccCHHHhhchhhcCEeECCCCcccccChhhcCC----------
Confidence            3688999999999877778999999999999999999666778889999999999999987766665544          


Q ss_pred             CcccccCCCCCCcEEEccCCeecccCCccCCCCCCCcEEEcccCccee-ccCccccCCCCCCEEeCCCCc----------
Q 039561           81 KAFEYSTNLNVLRVIELSKNNFLGEIAKGVTNPGASQTLNLSQNSFSR-TIPESIGSMKSLESIDFSANH----------  149 (190)
Q Consensus        81 ~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~-~~p~~l~~l~~L~~l~l~~N~----------  149 (190)
                              +++|++|++++|.+.+..+..++.+++|++|++++|.+++ .+|..++.+++|++|++++|.          
T Consensus       103 --------l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~l~~~~~~~~~  174 (606)
T 3vq2_A          103 --------LTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQ  174 (606)
T ss_dssp             --------CTTCCEEECTTSCCCCSSSSCCTTCTTCCEEECCSSCCCCCCCCGGGGTCTTCCEEECCSSCCCEECTTTTH
T ss_pred             --------cccCCEEEccCCccccccccccCCCCCCCEEeCCCCcccceechHhHhhcCCCCEEEccCCcceecChhhhh
Confidence                    9999999999999986666789999999999999999985 568899999999999999986          


Q ss_pred             ----------eEEeecccccccCCccccccccccccccCCccc
Q 039561          150 ----------YLNLSNNNLTGEIPSGIQLQGFHQSRFAGSELC  182 (190)
Q Consensus       150 ----------~l~l~~N~l~g~~p~~~~~~~l~~~~~~~n~l~  182 (190)
                                ++++++|.+++..+..+...+++.+.+++|.+.
T Consensus       175 ~l~~L~~~l~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~n~~~  217 (606)
T 3vq2_A          175 FLRENPQVNLSLDMSLNPIDFIQDQAFQGIKLHELTLRGNFNS  217 (606)
T ss_dssp             HHHHCTTCCCEEECTTCCCCEECTTTTTTCEEEEEEEESCCSC
T ss_pred             hhhccccccceeeccCCCcceeCcccccCceeeeeeccCCccc
Confidence                      489999999855555555558888888888553

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=99.84  E-value=3.4e-20  Score=146.08  Aligned_cols=78  Identities=19%  Similarity=0.243  Sum_probs=59.9

Q ss_pred             cCCCCCCCcEEEcccCcceeccCccccCCCCCCEEeCCCCc---------------eEEeecccccccCCccc-cccccc
Q 039561          109 GVTNPGASQTLNLSQNSFSRTIPESIGSMKSLESIDFSANH---------------YLNLSNNNLTGEIPSGI-QLQGFH  172 (190)
Q Consensus       109 ~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~l~l~~N~---------------~l~l~~N~l~g~~p~~~-~~~~l~  172 (190)
                      ++..+++|+.|++++|.+++..|..+..+++|+.|++++|.               +|++++|.++ .+|..+ .+.+++
T Consensus       243 ~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~l~~L~  321 (390)
T 3o6n_A          243 WLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVALNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLE  321 (390)
T ss_dssp             GGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECCSSCCCEEECSSSCCTTCCEEECCSSCCC-CCGGGHHHHTTCS
T ss_pred             HHcCCCCccEEECCCCcCCCcChhHccccccCCEEECCCCcCcccCcccCCCCCCCEEECCCCcce-ecCccccccCcCC
Confidence            35556778888888888887777788888888888888886               7888888887 566655 678888


Q ss_pred             cccccCCcccCCCCC
Q 039561          173 QSRFAGSELCGAPFP  187 (190)
Q Consensus       173 ~~~~~~n~l~~~~~~  187 (190)
                      .+++++|.+...+..
T Consensus       322 ~L~L~~N~i~~~~~~  336 (390)
T 3o6n_A          322 NLYLDHNSIVTLKLS  336 (390)
T ss_dssp             EEECCSSCCCCCCCC
T ss_pred             EEECCCCccceeCch
Confidence            888888877766543

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=99.84  E-value=1.4e-20  Score=155.78  Aligned_cols=178  Identities=17%  Similarity=0.157  Sum_probs=127.0

Q ss_pred             CcceeccCCccccC--CCcccCCCCCCcEEEcccCcccCcCCccccCCCCccEEeccCCcccCCCc-HHHHHHHHHHHhh
Q 039561            2 LQQGLKIQHKFSRS--FPTSTGALSSLESLHLHRNHLSGAIPLSLQNGTHFEVLDLRENAFIRDVP-KWIKKSLLALFMM   78 (190)
Q Consensus         2 L~~L~l~~n~l~~~--~p~~l~~l~~L~~l~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p-~~~~~~~~~l~~~   78 (190)
                      |++|++++|.+++.  +|..+..+++|++|++++|.++ .+|..+..+++|+.|++++|.+.+..| ..+. .+++|..+
T Consensus       352 L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~-~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~-~l~~L~~L  429 (606)
T 3vq2_A          352 LSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAI-IMSANFMGLEELQHLDFQHSTLKRVTEFSAFL-SLEKLLYL  429 (606)
T ss_dssp             CCEEECCSSCEEEEEECCHHHHCCSCCCEEECCSCSEE-EECCCCTTCTTCCEEECTTSEEESTTTTTTTT-TCTTCCEE
T ss_pred             CCEEECcCCccCCCcchhhhhccCCcccEeECCCCccc-cchhhccCCCCCCeeECCCCccCCccChhhhh-ccccCCEE
Confidence            56677777776654  2556666677777777777766 455566666777777777776665544 2222 23343222


Q ss_pred             -------cCCcccccCCCCCCcEEEccCCeecc-cCCccCCCCCCCcEEEcccCcceeccCccccCCCCCCEEeCCCCc-
Q 039561           79 -------KGKAFEYSTNLNVLRVIELSKNNFLG-EIAKGVTNPGASQTLNLSQNSFSRTIPESIGSMKSLESIDFSANH-  149 (190)
Q Consensus        79 -------~~~~~~~~~~~~~L~~L~l~~n~l~~-~~p~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~l~l~~N~-  149 (190)
                             .+..+..+..+++|++|++++|.+.+ .+|..++.+++|+.|++++|.+++..|..+..+++|+.|++++|+ 
T Consensus       430 ~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l  509 (606)
T 3vq2_A          430 DISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNL  509 (606)
T ss_dssp             ECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCC
T ss_pred             ECcCCCCCccchhhhcCCCCCCEEECCCCcCCCcchHHhhccCCCCCEEECCCCcCCccChhhhcccccCCEEECCCCcC
Confidence                   22234556668889999999998886 367788888999999999999887778888888899999998887 


Q ss_pred             ---------------eEEeecccccccCCccc-ccc-ccccccccCC-ccc
Q 039561          150 ---------------YLNLSNNNLTGEIPSGI-QLQ-GFHQSRFAGS-ELC  182 (190)
Q Consensus       150 ---------------~l~l~~N~l~g~~p~~~-~~~-~l~~~~~~~n-~l~  182 (190)
                                     +||+++|.++ .+|+.+ .+. +++.+++++| ..|
T Consensus       510 ~~~~~~~~~~l~~L~~L~l~~N~l~-~~p~~~~~l~~~L~~l~l~~N~~~c  559 (606)
T 3vq2_A          510 LFLDSSHYNQLYSLSTLDCSFNRIE-TSKGILQHFPKSLAFFNLTNNSVAC  559 (606)
T ss_dssp             SCEEGGGTTTCTTCCEEECTTSCCC-CEESCGGGSCTTCCEEECCSCCCCC
T ss_pred             CCcCHHHccCCCcCCEEECCCCcCc-ccCHhHhhhcccCcEEEccCCCccc
Confidence                           7899999998 777766 554 5889999999 444

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=99.84  E-value=1.5e-20  Score=150.42  Aligned_cols=182  Identities=18%  Similarity=0.139  Sum_probs=128.8

Q ss_pred             CcceeccCCccccCCCcccCCCCCCcEEEcccCcccCcCCccccCCCCccEEeccCCcccCCCcHHHHHHHHHHHhhc--
Q 039561            2 LQQGLKIQHKFSRSFPTSTGALSSLESLHLHRNHLSGAIPLSLQNGTHFEVLDLRENAFIRDVPKWIKKSLLALFMMK--   79 (190)
Q Consensus         2 L~~L~l~~n~l~~~~p~~l~~l~~L~~l~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~~~~~l~~~~--   79 (190)
                      ++.|++++|.++...+..+..+++|++|++++|.++...+..|..+++|++|++++|.+....+..+.. +++|..+.  
T Consensus        66 l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~-l~~L~~L~L~  144 (440)
T 3zyj_A           66 TRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTTIPNGAFVY-LSKLKELWLR  144 (440)
T ss_dssp             CSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSCCSSCCTTTSCS-CSSCCEEECC
T ss_pred             CcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCCcCCeeCHhHhhc-cccCceeeCC
Confidence            678999999999877788999999999999999999666678889999999999999977543333332 33332221  


Q ss_pred             C-----CcccccCCCCCCcEEEccCCe-ecccCCccCCCCCCCcEEEcccCcceeccCccccCCCCCCEEeCCCCc----
Q 039561           80 G-----KAFEYSTNLNVLRVIELSKNN-FLGEIAKGVTNPGASQTLNLSQNSFSRTIPESIGSMKSLESIDFSANH----  149 (190)
Q Consensus        80 ~-----~~~~~~~~~~~L~~L~l~~n~-l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~l~l~~N~----  149 (190)
                      +     ..+..+..+++|++|++++|+ +....+..+..+++|+.|++++|.++ .+| .+..+++|+.|++++|.    
T Consensus       145 ~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~-~~~-~~~~l~~L~~L~Ls~N~l~~~  222 (440)
T 3zyj_A          145 NNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLR-EIP-NLTPLIKLDELDLSGNHLSAI  222 (440)
T ss_dssp             SCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCS-SCC-CCTTCSSCCEEECTTSCCCEE
T ss_pred             CCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCc-ccc-ccCCCcccCEEECCCCccCcc
Confidence            1     112245556666667666633 33222335666777777777777776 445 36667777777777775    


Q ss_pred             ------------eEEeecccccccCCccc-cccccccccccCCcccCCCC
Q 039561          150 ------------YLNLSNNNLTGEIPSGI-QLQGFHQSRFAGSELCGAPF  186 (190)
Q Consensus       150 ------------~l~l~~N~l~g~~p~~~-~~~~l~~~~~~~n~l~~~~~  186 (190)
                                  +|++++|.+++..|..+ .+.+|+.+++++|.+.+.|.
T Consensus       223 ~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~  272 (440)
T 3zyj_A          223 RPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPH  272 (440)
T ss_dssp             CTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCCCCCT
T ss_pred             ChhhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCCccCh
Confidence                        67888888876656555 67888888888887776663

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=99.84  E-value=5.5e-20  Score=138.24  Aligned_cols=164  Identities=19%  Similarity=0.217  Sum_probs=136.9

Q ss_pred             CcceeccCCccccCCCcccCCCCCCcEEEcccCcccCcCCccccCCCCccEEeccCCcccCCCcHHHHHHHHHHHhhcCC
Q 039561            2 LQQGLKIQHKFSRSFPTSTGALSSLESLHLHRNHLSGAIPLSLQNGTHFEVLDLRENAFIRDVPKWIKKSLLALFMMKGK   81 (190)
Q Consensus         2 L~~L~l~~n~l~~~~p~~l~~l~~L~~l~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~~~~~l~~~~~~   81 (190)
                      .++++++++.++. +|..+.  +++++|++++|.++...+..|..+++|++|++++|.+.. +|...             
T Consensus        18 ~~~l~~~~~~l~~-ip~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~-i~~~~-------------   80 (270)
T 2o6q_A           18 KNSVDCSSKKLTA-IPSNIP--ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQT-LPAGI-------------   80 (270)
T ss_dssp             TTEEECTTSCCSS-CCSCCC--TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSC-CCTTT-------------
T ss_pred             CCEEEccCCCCCc-cCCCCC--CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCe-eChhh-------------
Confidence            4678999999986 776554  689999999999996555688899999999999999764 44322             


Q ss_pred             cccccCCCCCCcEEEccCCeecccCCccCCCCCCCcEEEcccCcceeccCccccCCCCCCEEeCCCCc------------
Q 039561           82 AFEYSTNLNVLRVIELSKNNFLGEIAKGVTNPGASQTLNLSQNSFSRTIPESIGSMKSLESIDFSANH------------  149 (190)
Q Consensus        82 ~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~l~l~~N~------------  149 (190)
                          +..+++|++|++++|.+.+..+..+..+++|+.|++++|.+++..+..+..+++|+.|++++|.            
T Consensus        81 ----~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l  156 (270)
T 2o6q_A           81 ----FKELKNLETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKL  156 (270)
T ss_dssp             ----TSSCTTCCEEECCSSCCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTC
T ss_pred             ----hcCCCCCCEEECCCCcCCcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCCccCHhHccCC
Confidence                2348999999999999986656678899999999999999997777788999999999999996            


Q ss_pred             ----eEEeecccccccCCccc-cccccccccccCCcccCCCC
Q 039561          150 ----YLNLSNNNLTGEIPSGI-QLQGFHQSRFAGSELCGAPF  186 (190)
Q Consensus       150 ----~l~l~~N~l~g~~p~~~-~~~~l~~~~~~~n~l~~~~~  186 (190)
                          +|++++|.+++..|..+ .+.+++.+++++|.+.+.|.
T Consensus       157 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~  198 (270)
T 2o6q_A          157 TSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPE  198 (270)
T ss_dssp             TTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCCSCCCT
T ss_pred             cccceeEecCCcCcEeChhHhccCCCcCEEECCCCcCCcCCH
Confidence                89999999995444444 68999999999998887764

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=99.84  E-value=5.8e-21  Score=145.82  Aligned_cols=183  Identities=19%  Similarity=0.141  Sum_probs=143.5

Q ss_pred             CCcceeccCCccccCCCcccCCCCCCcEEEcccCcccCc--CCccccCCCCccEEeccCCcccCCCcHHHHHHHHHHHhh
Q 039561            1 MLQQGLKIQHKFSRSFPTSTGALSSLESLHLHRNHLSGA--IPLSLQNGTHFEVLDLRENAFIRDVPKWIKKSLLALFMM   78 (190)
Q Consensus         1 ~L~~L~l~~n~l~~~~p~~l~~l~~L~~l~l~~n~~~~~--~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~~~~~l~~~   78 (190)
                      .|++|++++|.++...+..+..+++|++|++++|.++..  .+..+..+++|++|++++|.+.. +|..+. .+++|..+
T Consensus        29 ~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~-l~~~~~-~l~~L~~L  106 (306)
T 2z66_A           29 SATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVIT-MSSNFL-GLEQLEHL  106 (306)
T ss_dssp             TCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCSCSEEE-EEEEEE-TCTTCCEE
T ss_pred             CCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECCCCcccc-ChhhcC-CCCCCCEE
Confidence            378899999999974444578999999999999999822  25666778999999999999763 454333 24444333


Q ss_pred             c--C----Ccc--cccCCCCCCcEEEccCCeecccCCccCCCCCCCcEEEcccCccee-ccCccccCCCCCCEEeCCCCc
Q 039561           79 K--G----KAF--EYSTNLNVLRVIELSKNNFLGEIAKGVTNPGASQTLNLSQNSFSR-TIPESIGSMKSLESIDFSANH  149 (190)
Q Consensus        79 ~--~----~~~--~~~~~~~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~-~~p~~l~~l~~L~~l~l~~N~  149 (190)
                      .  +    ..+  ..+..+++|++|++++|.+.+..+..+..+++|+.|++++|.+++ ..|..+..+++|+.|++++|.
T Consensus       107 ~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~  186 (306)
T 2z66_A          107 DFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQ  186 (306)
T ss_dssp             ECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSC
T ss_pred             ECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCccccccchhHHhhCcCCCEEECCCCC
Confidence            1  1    122  467788899999999999987778888899999999999999986 578889999999999999997


Q ss_pred             ----------------eEEeecccccccCCccc-cccccccccccCCcccCCC
Q 039561          150 ----------------YLNLSNNNLTGEIPSGI-QLQGFHQSRFAGSELCGAP  185 (190)
Q Consensus       150 ----------------~l~l~~N~l~g~~p~~~-~~~~l~~~~~~~n~l~~~~  185 (190)
                                      +|++++|.+++..+..+ .+.+++.+++++|.+.+.+
T Consensus       187 l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~  239 (306)
T 2z66_A          187 LEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSK  239 (306)
T ss_dssp             CCEECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCCBCS
T ss_pred             cCCcCHHHhcCCCCCCEEECCCCccCccChhhccCcccCCEeECCCCCCcccC
Confidence                            79999999985444444 6889999999999777654

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.84  E-value=1.2e-21  Score=158.69  Aligned_cols=180  Identities=18%  Similarity=0.115  Sum_probs=134.1

Q ss_pred             CcceeccCCccccCCCcccCCCCCCcEEEcccCcccCcCCccccCCCCccEEeccCCcccCCCcHHHHHHHHHHHhhcCC
Q 039561            2 LQQGLKIQHKFSRSFPTSTGALSSLESLHLHRNHLSGAIPLSLQNGTHFEVLDLRENAFIRDVPKWIKKSLLALFMMKGK   81 (190)
Q Consensus         2 L~~L~l~~n~l~~~~p~~l~~l~~L~~l~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~~~~~l~~~~~~   81 (190)
                      |++|++++|.+++..|..+..+++|++|++++|.+++..|  +..+++|++|++++|.+.+..+.   ..+..|..-...
T Consensus        36 L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l~~~---~~L~~L~L~~N~  110 (487)
T 3oja_A           36 VKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELLVG---PSIETLHAANNN  110 (487)
T ss_dssp             CCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE--CTTCTTCCEEECCSSEEEEEEEC---TTCCEEECCSSC
T ss_pred             ccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc--cccCCCCCEEEecCCcCCCCCCC---CCcCEEECcCCc
Confidence            6889999999999777889999999999999999985554  88899999999999997653221   112111111111


Q ss_pred             ccc-ccCCCCCCcEEEccCCeecccCCccCCCCCCCcEEEcccCcceeccCcccc-CCCCCCEEeCCCCc----------
Q 039561           82 AFE-YSTNLNVLRVIELSKNNFLGEIAKGVTNPGASQTLNLSQNSFSRTIPESIG-SMKSLESIDFSANH----------  149 (190)
Q Consensus        82 ~~~-~~~~~~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~l~-~l~~L~~l~l~~N~----------  149 (190)
                      +.. ....+++|+.|++++|.+++..|..++.++.|+.|++++|.+++..|..+. .+++|+.|++++|.          
T Consensus       111 l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~~~~~~~~l  190 (487)
T 3oja_A          111 ISRVSCSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVKGQVVF  190 (487)
T ss_dssp             CCCEEECCCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEEECCCCC
T ss_pred             CCCCCccccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCccccccccccC
Confidence            111 112357788888888888877777788888888888888888877777765 67888888888886          


Q ss_pred             ----eEEeecccccccCCccccccccccccccCCcccCCCC
Q 039561          150 ----YLNLSNNNLTGEIPSGIQLQGFHQSRFAGSELCGAPF  186 (190)
Q Consensus       150 ----~l~l~~N~l~g~~p~~~~~~~l~~~~~~~n~l~~~~~  186 (190)
                          +|++++|.+++..|....+.+++.+++++|.+++.|.
T Consensus       191 ~~L~~L~Ls~N~l~~~~~~~~~l~~L~~L~Ls~N~l~~lp~  231 (487)
T 3oja_A          191 AKLKTLDLSSNKLAFMGPEFQSAAGVTWISLRNNKLVLIEK  231 (487)
T ss_dssp             TTCCEEECCSSCCCEECGGGGGGTTCSEEECTTSCCCEECT
T ss_pred             CCCCEEECCCCCCCCCCHhHcCCCCccEEEecCCcCcccch
Confidence                7888888888654443377888888888887776653

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=99.84  E-value=2.9e-20  Score=141.31  Aligned_cols=161  Identities=22%  Similarity=0.245  Sum_probs=138.6

Q ss_pred             CCcceeccCCccccCCCcccCCCCCCcEEEcccCcccCcCCccccCCCCccEEeccCCcccCCCcHHHHHHHHHHHhhcC
Q 039561            1 MLQQGLKIQHKFSRSFPTSTGALSSLESLHLHRNHLSGAIPLSLQNGTHFEVLDLRENAFIRDVPKWIKKSLLALFMMKG   80 (190)
Q Consensus         1 ~L~~L~l~~n~l~~~~p~~l~~l~~L~~l~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~~~~~l~~~~~   80 (190)
                      ++++++++++.++. +|..+.  +.+++|++++|.+++..+..|..+++|++|++++|.+.+..+.              
T Consensus        11 ~l~~l~~~~~~l~~-ip~~~~--~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~--------------   73 (290)
T 1p9a_G           11 SHLEVNCDKRNLTA-LPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVD--------------   73 (290)
T ss_dssp             TCCEEECTTSCCSS-CCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEECC--------------
T ss_pred             CccEEECCCCCCCc-CCCCCC--CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccCC--------------
Confidence            36789999999986 776664  7899999999999976778899999999999999997653221              


Q ss_pred             CcccccCCCCCCcEEEccCCeecccCCccCCCCCCCcEEEcccCcceeccCccccCCCCCCEEeCCCCc-----------
Q 039561           81 KAFEYSTNLNVLRVIELSKNNFLGEIAKGVTNPGASQTLNLSQNSFSRTIPESIGSMKSLESIDFSANH-----------  149 (190)
Q Consensus        81 ~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~l~l~~N~-----------  149 (190)
                            +.+++|++|++++|.+. .+|..+..+++|++|++++|.+++..+..|..+++|+.|++++|+           
T Consensus        74 ------~~l~~L~~L~Ls~N~l~-~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~  146 (290)
T 1p9a_G           74 ------GTLPVLGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTP  146 (290)
T ss_dssp             ------SCCTTCCEEECCSSCCS-SCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTT
T ss_pred             ------CCCCcCCEEECCCCcCC-cCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhccc
Confidence                  23889999999999998 788889999999999999999997666789999999999999997           


Q ss_pred             -----eEEeecccccccCCccc--cccccccccccCCcccCCCC
Q 039561          150 -----YLNLSNNNLTGEIPSGI--QLQGFHQSRFAGSELCGAPF  186 (190)
Q Consensus       150 -----~l~l~~N~l~g~~p~~~--~~~~l~~~~~~~n~l~~~~~  186 (190)
                           .|++++|.++ .+|..+  .+.+++.+.+++|.+...|.
T Consensus       147 l~~L~~L~L~~N~l~-~l~~~~~~~l~~L~~L~L~~N~l~~ip~  189 (290)
T 1p9a_G          147 TPKLEKLSLANNNLT-ELPAGLLNGLENLDTLLLQENSLYTIPK  189 (290)
T ss_dssp             CTTCCEEECTTSCCS-CCCTTTTTTCTTCCEEECCSSCCCCCCT
T ss_pred             ccCCCEEECCCCcCC-ccCHHHhcCcCCCCEEECCCCcCCccCh
Confidence                 8999999999 666654  68999999999998887764

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=99.84  E-value=1.9e-20  Score=151.07  Aligned_cols=183  Identities=14%  Similarity=0.110  Sum_probs=117.6

Q ss_pred             CcceeccCCccccCCCcccCCCCCCcEEEcccCcccCcCCccccCCCCccEEeccCCcccCCCcHHHHHHHHHHHhh---
Q 039561            2 LQQGLKIQHKFSRSFPTSTGALSSLESLHLHRNHLSGAIPLSLQNGTHFEVLDLRENAFIRDVPKWIKKSLLALFMM---   78 (190)
Q Consensus         2 L~~L~l~~n~l~~~~p~~l~~l~~L~~l~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~~~~~l~~~---   78 (190)
                      +++|++++|.+++..+..+..+++|++|++++|.+++..|..|..+++|++|++++|.+....+..+.. +++|..+   
T Consensus        34 l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~-l~~L~~L~Ls  112 (477)
T 2id5_A           34 TRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTG-LSNLTKLDIS  112 (477)
T ss_dssp             CSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCSCCTTSSTT-CTTCCEEECT
T ss_pred             CcEEECCCCccceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCcCCccCcccccC-CCCCCEEECC
Confidence            678999999999877788999999999999999998766888889999999999999876433333332 3333222   


Q ss_pred             ----cCCcccccCCCCCCcEEEccCCeecccCCccCCCCCCCcEEEcccCcceeccCccccCCCCCCEEeCCCCc-----
Q 039561           79 ----KGKAFEYSTNLNVLRVIELSKNNFLGEIAKGVTNPGASQTLNLSQNSFSRTIPESIGSMKSLESIDFSANH-----  149 (190)
Q Consensus        79 ----~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~l~l~~N~-----  149 (190)
                          ....+..+..+++|++|++++|.+.+..+..+..+++|+.|++++|.+++..+..+..+++|+.|++++|.     
T Consensus       113 ~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~  192 (477)
T 2id5_A          113 ENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIR  192 (477)
T ss_dssp             TSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSSCCHHHHTTCTTCCEEEEESCCCCEEC
T ss_pred             CCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCcccChhHhcccCCCcEEeCCCCcCcEeC
Confidence                11122344455556666666655554445555555666666666665554333445555666666655554     


Q ss_pred             -----------eEEeecccccccCCccc-cccccccccccCCcccCCC
Q 039561          150 -----------YLNLSNNNLTGEIPSGI-QLQGFHQSRFAGSELCGAP  185 (190)
Q Consensus       150 -----------~l~l~~N~l~g~~p~~~-~~~~l~~~~~~~n~l~~~~  185 (190)
                                 +|++++|.+.+.+|... ...+++.+.+++|.+.+.|
T Consensus       193 ~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~  240 (477)
T 2id5_A          193 DYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVP  240 (477)
T ss_dssp             TTCSCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESSCCCSCC
T ss_pred             hhhcccCcccceeeCCCCccccccCcccccCccccEEECcCCcccccC
Confidence                       56666665555555443 3446777777777666655

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=99.84  E-value=7.8e-21  Score=140.37  Aligned_cols=167  Identities=12%  Similarity=0.125  Sum_probs=135.6

Q ss_pred             CCcceeccCCccccCCCcccCCCCCCcEEEcccCc-ccCcCCccccCCCCccEEeccC-CcccCCCcHHHHHHHHHHHhh
Q 039561            1 MLQQGLKIQHKFSRSFPTSTGALSSLESLHLHRNH-LSGAIPLSLQNGTHFEVLDLRE-NAFIRDVPKWIKKSLLALFMM   78 (190)
Q Consensus         1 ~L~~L~l~~n~l~~~~p~~l~~l~~L~~l~l~~n~-~~~~~~~~~~~l~~L~~L~l~~-n~~~~~~p~~~~~~~~~l~~~   78 (190)
                      .|++|++++|.+++..+..+..+++|++|++++|. ++...+..|..+++|++|++++ |.+....+..+          
T Consensus        32 ~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f----------  101 (239)
T 2xwt_C           32 STQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDAL----------  101 (239)
T ss_dssp             TCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSE----------
T ss_pred             cccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHh----------
Confidence            36889999999998666688999999999999997 8854555788899999999998 88764333333          


Q ss_pred             cCCcccccCCCCCCcEEEccCCeecccCCccCCCCCCCc---EEEcccC-cceeccCccccCCCCCC-EEeCCCCc----
Q 039561           79 KGKAFEYSTNLNVLRVIELSKNNFLGEIAKGVTNPGASQ---TLNLSQN-SFSRTIPESIGSMKSLE-SIDFSANH----  149 (190)
Q Consensus        79 ~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~l~~L~---~L~l~~n-~l~~~~p~~l~~l~~L~-~l~l~~N~----  149 (190)
                              ..+++|++|++++|.+.+ +|. +..+++|+   .|++++| .+++..+..+..+++|+ .+++++|.    
T Consensus       102 --------~~l~~L~~L~l~~n~l~~-lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~~i  171 (239)
T 2xwt_C          102 --------KELPLLKFLGIFNTGLKM-FPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTSV  171 (239)
T ss_dssp             --------ECCTTCCEEEEEEECCCS-CCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCCEE
T ss_pred             --------CCCCCCCEEeCCCCCCcc-ccc-cccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCccc
Confidence                    348899999999999984 676 78888888   9999999 89866666788999999 99999986    


Q ss_pred             -----------eEEeeccc-ccccCCccc-cc-cccccccccCCcccCCCCC
Q 039561          150 -----------YLNLSNNN-LTGEIPSGI-QL-QGFHQSRFAGSELCGAPFP  187 (190)
Q Consensus       150 -----------~l~l~~N~-l~g~~p~~~-~~-~~l~~~~~~~n~l~~~~~~  187 (190)
                                 ++++++|. +++..+..+ .+ .+++.+++++|.+.+.|..
T Consensus       172 ~~~~~~~~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~~l~~~  223 (239)
T 2xwt_C          172 QGYAFNGTKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVTALPSK  223 (239)
T ss_dssp             CTTTTTTCEEEEEECTTCTTCCEECTTTTTTCSBCCSEEECTTCCCCCCCCT
T ss_pred             CHhhcCCCCCCEEEcCCCCCcccCCHHHhhccccCCcEEECCCCccccCChh
Confidence                       79999995 984434444 57 8999999999988877743

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=99.84  E-value=2.3e-20  Score=143.96  Aligned_cols=178  Identities=16%  Similarity=0.154  Sum_probs=108.8

Q ss_pred             CcceeccCCccccCCCcccCCCCCCcEEEcccCcccCcCCccccCCCCccEEeccCCcccCCCcHHHHHHHHHHHhhc--
Q 039561            2 LQQGLKIQHKFSRSFPTSTGALSSLESLHLHRNHLSGAIPLSLQNGTHFEVLDLRENAFIRDVPKWIKKSLLALFMMK--   79 (190)
Q Consensus         2 L~~L~l~~n~l~~~~p~~l~~l~~L~~l~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~~~~~l~~~~--   79 (190)
                      +++++++++.++. +|..+.  +.+++|++++|.+++..+..|..+++|++|++++|.+.+..|..+.. +++|..+.  
T Consensus        33 l~~l~~~~~~l~~-lp~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~-l~~L~~L~Ls  108 (330)
T 1xku_A           33 LRVVQCSDLGLEK-VPKDLP--PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAP-LVKLERLYLS  108 (330)
T ss_dssp             TTEEECTTSCCCS-CCCSCC--TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTT-CTTCCEEECC
T ss_pred             CeEEEecCCCccc-cCccCC--CCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcC-CCCCCEEECC
Confidence            5778899988886 676554  68999999999999666668899999999999999988766766653 55553331  


Q ss_pred             C----CcccccCCCCCCcEEEccCCeecccCCccCCCCCCCcEEEcccCccee--ccCccccCCCCCCEEeC--------
Q 039561           80 G----KAFEYSTNLNVLRVIELSKNNFLGEIAKGVTNPGASQTLNLSQNSFSR--TIPESIGSMKSLESIDF--------  145 (190)
Q Consensus        80 ~----~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~--~~p~~l~~l~~L~~l~l--------  145 (190)
                      .    .+|..+.  ++|++|++++|.+.+..+..+..+++|+.|++++|.++.  ..+..+..+++|+.+++        
T Consensus       109 ~n~l~~l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~l  186 (330)
T 1xku_A          109 KNQLKELPEKMP--KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTI  186 (330)
T ss_dssp             SSCCSBCCSSCC--TTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCCSC
T ss_pred             CCcCCccChhhc--ccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCccccC
Confidence            1    1222211  345555555555553333344555555555555555532  33444444444444444        


Q ss_pred             -------------CCCc----------------eEEeecccccccCCccc-cccccccccccCCcccCCC
Q 039561          146 -------------SANH----------------YLNLSNNNLTGEIPSGI-QLQGFHQSRFAGSELCGAP  185 (190)
Q Consensus       146 -------------~~N~----------------~l~l~~N~l~g~~p~~~-~~~~l~~~~~~~n~l~~~~  185 (190)
                                   ++|.                +|++++|.+++..|..+ .+.+++.+.+++|.+...|
T Consensus       187 ~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~lp  256 (330)
T 1xku_A          187 PQGLPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVKVP  256 (330)
T ss_dssp             CSSCCTTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCSSCC
T ss_pred             CccccccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCceeChhhccCCCCCCEEECCCCcCccCC
Confidence                         4443                46666666654444333 4556666666666555544

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=99.84  E-value=1.6e-20  Score=151.53  Aligned_cols=183  Identities=17%  Similarity=0.131  Sum_probs=152.3

Q ss_pred             CCcceeccCCccccCCCcccCCCCCCcEEEcccCcccCcCCccccCCCCccEEeccCCcccCCCcHHHHHHHHHHHhh--
Q 039561            1 MLQQGLKIQHKFSRSFPTSTGALSSLESLHLHRNHLSGAIPLSLQNGTHFEVLDLRENAFIRDVPKWIKKSLLALFMM--   78 (190)
Q Consensus         1 ~L~~L~l~~n~l~~~~p~~l~~l~~L~~l~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~~~~~l~~~--   78 (190)
                      .|++|++++|.+++..|..+.++++|++|++++|.++...+..|..+++|++|++++|.+.+..+..+. .+++|..+  
T Consensus        57 ~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~-~l~~L~~L~l  135 (477)
T 2id5_A           57 HLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQ-DLYNLKSLEV  135 (477)
T ss_dssp             TCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCSCCTTSSTTCTTCCEEECTTSCCCEECTTTTT-TCTTCCEEEE
T ss_pred             CCCEEECCCCccCEeChhhhhCCccCCEEECCCCcCCccCcccccCCCCCCEEECCCCccccCChhHcc-ccccCCEEEC
Confidence            378999999999997788999999999999999999954445678899999999999998776665554 25555333  


Q ss_pred             -----cCCcccccCCCCCCcEEEccCCeecccCCccCCCCCCCcEEEcccCcceeccCccccCCCCCCEEeCCCCc----
Q 039561           79 -----KGKAFEYSTNLNVLRVIELSKNNFLGEIAKGVTNPGASQTLNLSQNSFSRTIPESIGSMKSLESIDFSANH----  149 (190)
Q Consensus        79 -----~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~l~l~~N~----  149 (190)
                           ....+..+..+++|++|++++|.+.+..+..+..+++|+.|++++|.+++..+..+..+++|+.|++++|.    
T Consensus       136 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~  215 (477)
T 2id5_A          136 GDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDT  215 (477)
T ss_dssp             CCTTCCEECTTSSTTCTTCCEEEEESCCCSSCCHHHHTTCTTCCEEEEESCCCCEECTTCSCSCTTCCEEEEECCTTCCE
T ss_pred             CCCccceeChhhccCCCCCCEEECCCCcCcccChhHhcccCCCcEEeCCCCcCcEeChhhcccCcccceeeCCCCccccc
Confidence                 12235578889999999999999986555678999999999999999998777889999999999999975    


Q ss_pred             ------------eEEeecccccccCCcc-c-cccccccccccCCcccCCC
Q 039561          150 ------------YLNLSNNNLTGEIPSG-I-QLQGFHQSRFAGSELCGAP  185 (190)
Q Consensus       150 ------------~l~l~~N~l~g~~p~~-~-~~~~l~~~~~~~n~l~~~~  185 (190)
                                  +|++++|.++ .+|.. + .+.+|+.+++++|.+.+.+
T Consensus       216 ~~~~~~~~~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~Ls~n~l~~~~  264 (477)
T 2id5_A          216 MTPNCLYGLNLTSLSITHCNLT-AVPYLAVRHLVYLRFLNLSYNPISTIE  264 (477)
T ss_dssp             ECTTTTTTCCCSEEEEESSCCC-SCCHHHHTTCTTCCEEECCSSCCCEEC
T ss_pred             cCcccccCccccEEECcCCccc-ccCHHHhcCccccCeeECCCCcCCccC
Confidence                        7999999999 67743 3 7899999999999777655

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=99.83  E-value=2.7e-20  Score=154.04  Aligned_cols=181  Identities=22%  Similarity=0.200  Sum_probs=138.4

Q ss_pred             CCcceeccCCccccCC--CcccCCCCCCcEEEcccCcccCcCCccccCCCCccEEeccCCcccCCCcHHHHHHHHHHHhh
Q 039561            1 MLQQGLKIQHKFSRSF--PTSTGALSSLESLHLHRNHLSGAIPLSLQNGTHFEVLDLRENAFIRDVPKWIKKSLLALFMM   78 (190)
Q Consensus         1 ~L~~L~l~~n~l~~~~--p~~l~~l~~L~~l~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~~~~~l~~~   78 (190)
                      +|++|++++|.+++..  +..+..+++|++|++++|.+++..|..+..+++|+.|++++|.+.+..+......+++|..+
T Consensus       351 ~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L  430 (606)
T 3t6q_A          351 NLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVL  430 (606)
T ss_dssp             TCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEECCTTCCTTTTCTTCCEE
T ss_pred             cCCEEECCCCccccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcCCCcccchhhhCcccCCEE
Confidence            3677888888887754  66778888888888888888766677777888888888888887665544321224444322


Q ss_pred             -------cCCcccccCCCCCCcEEEccCCeeccc---CCccCCCCCCCcEEEcccCcceeccCccccCCCCCCEEeCCCC
Q 039561           79 -------KGKAFEYSTNLNVLRVIELSKNNFLGE---IAKGVTNPGASQTLNLSQNSFSRTIPESIGSMKSLESIDFSAN  148 (190)
Q Consensus        79 -------~~~~~~~~~~~~~L~~L~l~~n~l~~~---~p~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~l~l~~N  148 (190)
                             ....+..+..+++|++|++++|.+.+.   .+..+..+++|+.|++++|.+++..|..+..+++|+.|++++|
T Consensus       431 ~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N  510 (606)
T 3t6q_A          431 NLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHN  510 (606)
T ss_dssp             ECTTCCCBTTCTTTTTTCTTCCEEECTTCBCGGGEECSSCGGGGCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred             ECCCCccCCcCHHHHhCCCCCCEEECCCCCCCccccccchhhccCCCccEEECCCCccCccChhhhccccCCCEEECCCC
Confidence                   233455677789999999999998752   2356788899999999999999888888999999999999999


Q ss_pred             c---------------eEEeecccccccCCccc-cccccccccccCCcc
Q 039561          149 H---------------YLNLSNNNLTGEIPSGI-QLQGFHQSRFAGSEL  181 (190)
Q Consensus       149 ~---------------~l~l~~N~l~g~~p~~~-~~~~l~~~~~~~n~l  181 (190)
                      +               ++++++|.+++..|..+ .+.+++.+++++|.+
T Consensus       511 ~l~~~~~~~l~~l~~L~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~  559 (606)
T 3t6q_A          511 RLTSSSIEALSHLKGIYLNLASNHISIILPSLLPILSQQRTINLRQNPL  559 (606)
T ss_dssp             CCCGGGGGGGTTCCSCEEECCSSCCCCCCGGGHHHHHTSSEEECTTCCE
T ss_pred             ccCcCChhHhCcccccEEECcCCcccccCHhhcccCCCCCEEeCCCCCc
Confidence            7               68899999997666665 788899999999933

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.83  E-value=3.6e-20  Score=153.43  Aligned_cols=109  Identities=19%  Similarity=0.145  Sum_probs=67.8

Q ss_pred             CcceeccCCccccCCCcccCCCCCCcEEEcccCcccCcCCccccCCCCccEEeccCCcccCCCcHHHHHHHHHHHhhcCC
Q 039561            2 LQQGLKIQHKFSRSFPTSTGALSSLESLHLHRNHLSGAIPLSLQNGTHFEVLDLRENAFIRDVPKWIKKSLLALFMMKGK   81 (190)
Q Consensus         2 L~~L~l~~n~l~~~~p~~l~~l~~L~~l~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~~~~~l~~~~~~   81 (190)
                      |++|++++|.+++..|..++.+++|++|++++|.+++..|..|..+++|++|++++|.+.. +|..+             
T Consensus        77 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~-l~~~~-------------  142 (597)
T 3oja_B           77 VELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSS-LPRGI-------------  142 (597)
T ss_dssp             CSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCC-CCTTT-------------
T ss_pred             CcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEEeeCCCCCC-CCHHH-------------
Confidence            5667777777776555567777777777777777775555556667777777777777553 33322             


Q ss_pred             cccccCCCCCCcEEEccCCeecccCCccCCCCCCCcEEEcccCccee
Q 039561           82 AFEYSTNLNVLRVIELSKNNFLGEIAKGVTNPGASQTLNLSQNSFSR  128 (190)
Q Consensus        82 ~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~  128 (190)
                          ++.+++|++|++++|.+.+..|..++.+++|+.|++++|.+++
T Consensus       143 ----~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~  185 (597)
T 3oja_B          143 ----FHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTH  185 (597)
T ss_dssp             ----TTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSB
T ss_pred             ----hccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCC
Confidence                2235566666666666655555555566666666666665553

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=99.83  E-value=4.1e-20  Score=153.01  Aligned_cols=161  Identities=18%  Similarity=0.149  Sum_probs=121.6

Q ss_pred             CCcceeccCCccccCCCcccCCCCCCcEEEcccCcccCcCCccccCCCCccEEeccCCcccCCCcHHHHHHHHHHHhhcC
Q 039561            1 MLQQGLKIQHKFSRSFPTSTGALSSLESLHLHRNHLSGAIPLSLQNGTHFEVLDLRENAFIRDVPKWIKKSLLALFMMKG   80 (190)
Q Consensus         1 ~L~~L~l~~n~l~~~~p~~l~~l~~L~~l~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~~~~~l~~~~~   80 (190)
                      ++++|++++|.+++..+..|.++++|++|++++|.+++..+..|..+++|++|++++|.+.+..+..+..          
T Consensus        53 ~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~~f~~----------  122 (635)
T 4g8a_A           53 STKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSG----------  122 (635)
T ss_dssp             TCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECGGGGTT----------
T ss_pred             CCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCCCCCHHHhcC----------
Confidence            3688999999999866678999999999999999998655667888999999999999976544444444          


Q ss_pred             CcccccCCCCCCcEEEccCCeecccCCccCCCCCCCcEEEcccCccee-ccCccccCCCCCCEEeCCCCc----------
Q 039561           81 KAFEYSTNLNVLRVIELSKNNFLGEIAKGVTNPGASQTLNLSQNSFSR-TIPESIGSMKSLESIDFSANH----------  149 (190)
Q Consensus        81 ~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~-~~p~~l~~l~~L~~l~l~~N~----------  149 (190)
                              +++|++|++++|++++..+..++.+++|++|++++|.+++ ..|..++.+++|+.|++++|+          
T Consensus       123 --------L~~L~~L~Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~  194 (635)
T 4g8a_A          123 --------LSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLR  194 (635)
T ss_dssp             --------CTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGH
T ss_pred             --------CCCCCEEECCCCcCCCCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCcccccccccccc
Confidence                    8899999999999986555678899999999999999875 356778888999988888876          


Q ss_pred             ----------eEEeecccccccCCccccccccccccccCC
Q 039561          150 ----------YLNLSNNNLTGEIPSGIQLQGFHQSRFAGS  179 (190)
Q Consensus       150 ----------~l~l~~N~l~g~~p~~~~~~~l~~~~~~~n  179 (190)
                                .++++.|.+....|.......+..+.+.+|
T Consensus       195 ~L~~l~~~~~~~~ls~n~l~~i~~~~~~~~~~~~l~l~~n  234 (635)
T 4g8a_A          195 VLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKLTLRNN  234 (635)
T ss_dssp             HHHTCTTCCCEEECTTCCCCEECTTTTTTCEEEEEEEESC
T ss_pred             chhhhhhhhhhhhcccCcccccCcccccchhhhhhhhhcc
Confidence                      466777777643333333333333333333

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=99.83  E-value=7.8e-20  Score=143.98  Aligned_cols=108  Identities=19%  Similarity=0.147  Sum_probs=63.6

Q ss_pred             CcceeccCCccccCCCcccCCCCCCcEEEcccCcccCcCCccccCCCCccEEeccCCcccCCCcHHHHHHHHHHHhhcCC
Q 039561            2 LQQGLKIQHKFSRSFPTSTGALSSLESLHLHRNHLSGAIPLSLQNGTHFEVLDLRENAFIRDVPKWIKKSLLALFMMKGK   81 (190)
Q Consensus         2 L~~L~l~~n~l~~~~p~~l~~l~~L~~l~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~~~~~l~~~~~~   81 (190)
                      |++|++++|.+++..+..+..+++|++|++++|.+++..|..+..+++|++|++++|.+. .+|..+             
T Consensus        71 L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~l~~~~-------------  136 (390)
T 3o6n_A           71 VELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLS-SLPRGI-------------  136 (390)
T ss_dssp             CSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-CCCTTT-------------
T ss_pred             CcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEEECCCCccC-cCCHHH-------------
Confidence            566777777776655556667777777777777776555555666777777777777655 344322             


Q ss_pred             cccccCCCCCCcEEEccCCeecccCCccCCCCCCCcEEEcccCcce
Q 039561           82 AFEYSTNLNVLRVIELSKNNFLGEIAKGVTNPGASQTLNLSQNSFS  127 (190)
Q Consensus        82 ~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~  127 (190)
                          +..+++|++|++++|.+.+..+..++.+++|+.|++++|.++
T Consensus       137 ----~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~  178 (390)
T 3o6n_A          137 ----FHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLT  178 (390)
T ss_dssp             ----TTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCS
T ss_pred             ----hcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCC
Confidence                123455555555555555444444555555555555555544

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=99.82  E-value=3.5e-20  Score=151.69  Aligned_cols=147  Identities=15%  Similarity=0.151  Sum_probs=99.5

Q ss_pred             CCcceeccCCccccCCCcccCCCCCCcEEEcccCcccCcCCccccCCCCccEEeccCCcccCCCcHHHHHHHHHHHhhc-
Q 039561            1 MLQQGLKIQHKFSRSFPTSTGALSSLESLHLHRNHLSGAIPLSLQNGTHFEVLDLRENAFIRDVPKWIKKSLLALFMMK-   79 (190)
Q Consensus         1 ~L~~L~l~~n~l~~~~p~~l~~l~~L~~l~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~~~~~l~~~~-   79 (190)
                      .|++|++++|.+++..|..+..+++|++|++++|.+++..|..|..+++|++|++++|.+.+..|..+.. +++|..+. 
T Consensus        27 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~-l~~L~~L~L  105 (549)
T 2z81_A           27 AMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGP-LSSLKYLNL  105 (549)
T ss_dssp             TCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCSCCHHHHTT-CTTCCEEEC
T ss_pred             CccEEECcCCccCccChhhhhcCCcccEEECCCCCcCccChhhccccccCCEEECCCCccCccCHHHhcc-CCCCcEEEC
Confidence            3789999999999877888999999999999999999777788999999999999999988766655653 33332221 


Q ss_pred             ------C-CcccccCCCCCCcEEEccCCeecccCC-ccCCCCCCCcEEEcccCcceeccCccccCCCCCCEEeCCCC
Q 039561           80 ------G-KAFEYSTNLNVLRVIELSKNNFLGEIA-KGVTNPGASQTLNLSQNSFSRTIPESIGSMKSLESIDFSAN  148 (190)
Q Consensus        80 ------~-~~~~~~~~~~~L~~L~l~~n~l~~~~p-~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~l~l~~N  148 (190)
                            . ..+..++.+++|++|++++|.+.+.+| ..+..+++|++|++++|.+++..|..+..+++|+.++++.|
T Consensus       106 s~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n  182 (549)
T 2z81_A          106 MGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLS  182 (549)
T ss_dssp             TTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECS
T ss_pred             CCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCcccccChhhhhccccCceEecccC
Confidence                  0 123344555555566655555222333 34555555666666666655555555555555555555444

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=99.82  E-value=6.2e-21  Score=163.33  Aligned_cols=169  Identities=14%  Similarity=0.167  Sum_probs=124.7

Q ss_pred             CccccCCCcccCCCCCCcEEEcccCcccC-----------------cCCcccc--CCCCccEEeccCCcccCCCcHHHHH
Q 039561           10 HKFSRSFPTSTGALSSLESLHLHRNHLSG-----------------AIPLSLQ--NGTHFEVLDLRENAFIRDVPKWIKK   70 (190)
Q Consensus        10 n~l~~~~p~~l~~l~~L~~l~l~~n~~~~-----------------~~~~~~~--~l~~L~~L~l~~n~~~~~~p~~~~~   70 (190)
                      |.+++ +|+.++++++|++|++++|.+++                 .+|..+.  .+++|++|++++|.+.+.+|..+..
T Consensus       435 N~L~~-IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~  513 (876)
T 4ecn_A          435 NRITF-ISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYD  513 (876)
T ss_dssp             CEEEE-ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGG
T ss_pred             Ccccc-hhHHHhcCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccChHHHhC
Confidence            56666 88899999999999999999996                 2888877  9999999999999999999987764


Q ss_pred             HHHHHHhh--------cC-CcccccCC-------CCCCcEEEccCCeecccCCc--cCCCCCCCcEEEcccCcceeccCc
Q 039561           71 SLLALFMM--------KG-KAFEYSTN-------LNVLRVIELSKNNFLGEIAK--GVTNPGASQTLNLSQNSFSRTIPE  132 (190)
Q Consensus        71 ~~~~l~~~--------~~-~~~~~~~~-------~~~L~~L~l~~n~l~~~~p~--~~~~l~~L~~L~l~~n~l~~~~p~  132 (190)
                       +++|..+        .+ .+|..++.       +++|+.|++++|.+. .+|.  .++.+++|+.|++++|.++ .+| 
T Consensus       514 -L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~l~~L~~L~~L~Ls~N~l~-~lp-  589 (876)
T 4ecn_A          514 -LPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE-EFPASASLQKMVKLGLLDCVHNKVR-HLE-  589 (876)
T ss_dssp             -CSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC-BCCCHHHHTTCTTCCEEECTTSCCC-BCC-
T ss_pred             -CCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCC-ccCChhhhhcCCCCCEEECCCCCcc-cch-
Confidence             4444322        11 23433333       347777777777777 6776  7777777777888777777 666 


Q ss_pred             cccCCCCCCEEeCCCCc----------------eEEeecccccccCCcccc-c--cccccccccCCcccCC
Q 039561          133 SIGSMKSLESIDFSANH----------------YLNLSNNNLTGEIPSGIQ-L--QGFHQSRFAGSELCGA  184 (190)
Q Consensus       133 ~l~~l~~L~~l~l~~N~----------------~l~l~~N~l~g~~p~~~~-~--~~l~~~~~~~n~l~~~  184 (190)
                      .++.+++|+.|++++|.                +|++++|.++ .+|..+. .  .+++.+.+++|.+++.
T Consensus       590 ~~~~L~~L~~L~Ls~N~l~~lp~~l~~l~~~L~~L~Ls~N~L~-~lp~~~~~~~~~~L~~L~Ls~N~l~g~  659 (876)
T 4ecn_A          590 AFGTNVKLTDLKLDYNQIEEIPEDFCAFTDQVEGLGFSHNKLK-YIPNIFNAKSVYVMGSVDFSYNKIGSE  659 (876)
T ss_dssp             CCCTTSEESEEECCSSCCSCCCTTSCEECTTCCEEECCSSCCC-SCCSCCCTTCSSCEEEEECCSSCTTTT
T ss_pred             hhcCCCcceEEECcCCccccchHHHhhccccCCEEECcCCCCC-cCchhhhccccCCCCEEECcCCcCCCc
Confidence            67777777777777775                5777777777 6776552 2  2377777777766654

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=99.82  E-value=9.3e-20  Score=133.21  Aligned_cols=117  Identities=15%  Similarity=0.125  Sum_probs=55.2

Q ss_pred             eeccCCccccCCCcccCCCCCCcEEEcccCcccCcCCccccCCCCccEEeccCCcccCCCcHHHHHHHHHHHhhcCCccc
Q 039561            5 GLKIQHKFSRSFPTSTGALSSLESLHLHRNHLSGAIPLSLQNGTHFEVLDLRENAFIRDVPKWIKKSLLALFMMKGKAFE   84 (190)
Q Consensus         5 L~l~~n~l~~~~p~~l~~l~~L~~l~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~~~~~l~~~~~~~~~   84 (190)
                      ++.+++.++. +|..+.  ++++.|++++|.+++..+..|..+++|++|++++|.+.+..|..+..              
T Consensus        16 v~c~~~~l~~-iP~~l~--~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~--------------   78 (220)
T 2v9t_B           16 VDCRGKGLTE-IPTNLP--ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQG--------------   78 (220)
T ss_dssp             EECTTSCCSS-CCSSCC--TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTT--------------
T ss_pred             EEcCCCCcCc-CCCccC--cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhC--------------
Confidence            4444444443 343332  34555555555555333334445555555555555544333333322              


Q ss_pred             ccCCCCCCcEEEccCCeecccCCccCCCCCCCcEEEcccCcceeccCccccCCCCCCE
Q 039561           85 YSTNLNVLRVIELSKNNFLGEIAKGVTNPGASQTLNLSQNSFSRTIPESIGSMKSLES  142 (190)
Q Consensus        85 ~~~~~~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~  142 (190)
                          +++|++|++++|.++...+..+..+++|+.|++++|.+++..|..+..+++|+.
T Consensus        79 ----l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~  132 (220)
T 2v9t_B           79 ----LRSLNSLVLYGNKITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNL  132 (220)
T ss_dssp             ----CSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCE
T ss_pred             ----CcCCCEEECCCCcCCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCE
Confidence                455555555555554222233444555555555555555444444555555553

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=99.82  E-value=5.4e-20  Score=152.27  Aligned_cols=160  Identities=19%  Similarity=0.152  Sum_probs=131.2

Q ss_pred             CcceeccCCccccCCCcccCCCCCCcEEEcccCcccCcCCccccCCCCccEEeccCCcccCCCcHHHHHHHHHHHhhcCC
Q 039561            2 LQQGLKIQHKFSRSFPTSTGALSSLESLHLHRNHLSGAIPLSLQNGTHFEVLDLRENAFIRDVPKWIKKSLLALFMMKGK   81 (190)
Q Consensus         2 L~~L~l~~n~l~~~~p~~l~~l~~L~~l~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~~~~~l~~~~~~   81 (190)
                      +++|++++|.+++..|..++.+++|++|++++|.+++..|..|..+++|++|++++|.+.+..|..+..           
T Consensus        35 l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~-----------  103 (606)
T 3t6q_A           35 TECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAETALSG-----------  103 (606)
T ss_dssp             CCEEECTTCCCSEECTTTSTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCSEECTTTTSS-----------
T ss_pred             CcEEEccCCccCcCChhHhccCccceEEECCCCccceeChhhccCccccCeeeCCCCcccccChhhhcc-----------
Confidence            678999999999877888999999999999999998777888999999999999999987666665544           


Q ss_pred             cccccCCCCCCcEEEccCCeecccCCccCCCCCCCcEEEcccCcceeccCccccCCCCCCEEeCCCCc------------
Q 039561           82 AFEYSTNLNVLRVIELSKNNFLGEIAKGVTNPGASQTLNLSQNSFSRTIPESIGSMKSLESIDFSANH------------  149 (190)
Q Consensus        82 ~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~l~l~~N~------------  149 (190)
                             +++|++|++++|.+.+..+..++.+++|++|++++|.+++..+..+..+++|+.|++++|.            
T Consensus       104 -------l~~L~~L~L~~n~i~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l  176 (606)
T 3t6q_A          104 -------PKALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSL  176 (606)
T ss_dssp             -------CTTCCEEECTTSCCSCGGGSCCTTCTTCCEEECCSSCCCCCCCCTTCCCTTCCEEECCSSCCCEECHHHHHTT
T ss_pred             -------cccccEeeccccCcccCCcchhccCCcccEEECCCCcccccCcccccCCcccCEEEcccCcccccChhhhhhh
Confidence                   8889999999999886557778888999999999999886443444458889999988886            


Q ss_pred             ------eEEeecccccccCCccccccccccccccCC
Q 039561          150 ------YLNLSNNNLTGEIPSGIQLQGFHQSRFAGS  179 (190)
Q Consensus       150 ------~l~l~~N~l~g~~p~~~~~~~l~~~~~~~n  179 (190)
                            .+++++|.+++..|..+....++.+.+.+|
T Consensus       177 ~~L~~l~L~l~~n~l~~~~~~~~~~~~L~~L~l~~~  212 (606)
T 3t6q_A          177 QQATNLSLNLNGNDIAGIEPGAFDSAVFQSLNFGGT  212 (606)
T ss_dssp             TTCCSEEEECTTCCCCEECTTTTTTCEEEEEECTTC
T ss_pred             cccceeEEecCCCccCccChhHhhhccccccccCCc
Confidence                  478889999877777766667777777665

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=99.82  E-value=9.2e-20  Score=133.25  Aligned_cols=131  Identities=15%  Similarity=0.163  Sum_probs=114.5

Q ss_pred             CCcceeccCCccccCCCcccCCCCCCcEEEcccCcccCcCCccccCCCCccEEeccCCcccCCCcHHHHHHHHHHHhhcC
Q 039561            1 MLQQGLKIQHKFSRSFPTSTGALSSLESLHLHRNHLSGAIPLSLQNGTHFEVLDLRENAFIRDVPKWIKKSLLALFMMKG   80 (190)
Q Consensus         1 ~L~~L~l~~n~l~~~~p~~l~~l~~L~~l~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~~~~~l~~~~~   80 (190)
                      ++++|++++|.+++..+..+..+++|++|++++|.+++..|..|..+++|++|++++|.+....+..+.           
T Consensus        33 ~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~-----------  101 (220)
T 2v9t_B           33 TITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKITELPKSLFE-----------  101 (220)
T ss_dssp             TCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSCCCCCCTTTTT-----------
T ss_pred             CCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCcCCccCHhHcc-----------
Confidence            368899999999986667899999999999999999977788999999999999999998743333333           


Q ss_pred             CcccccCCCCCCcEEEccCCeecccCCccCCCCCCCcEEEcccCcceeccCccccCCCCCCEEeCCCCc
Q 039561           81 KAFEYSTNLNVLRVIELSKNNFLGEIAKGVTNPGASQTLNLSQNSFSRTIPESIGSMKSLESIDFSANH  149 (190)
Q Consensus        81 ~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~l~l~~N~  149 (190)
                             .+++|++|++++|.+.+..|..+..+++|+.|++++|.+++..+..+..+++|+.+++++|.
T Consensus       102 -------~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~  163 (220)
T 2v9t_B          102 -------GLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNP  163 (220)
T ss_dssp             -------TCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSC
T ss_pred             -------CCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCC
Confidence                   38999999999999998778899999999999999999997777779999999988877776

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=99.82  E-value=1.4e-20  Score=144.20  Aligned_cols=178  Identities=17%  Similarity=0.165  Sum_probs=108.9

Q ss_pred             CcceeccCCccccCCCccc--CCCCCCcEEEcccCcccCcCC----ccccCCCCccEEeccCCcccCCCcHHHHHHHHHH
Q 039561            2 LQQGLKIQHKFSRSFPTST--GALSSLESLHLHRNHLSGAIP----LSLQNGTHFEVLDLRENAFIRDVPKWIKKSLLAL   75 (190)
Q Consensus         2 L~~L~l~~n~l~~~~p~~l--~~l~~L~~l~l~~n~~~~~~~----~~~~~l~~L~~L~l~~n~~~~~~p~~~~~~~~~l   75 (190)
                      |++|++++|.+++..|..+  ..+++|++|++++|.+++..+    ..+..+++|++|++++|.+.+..+..+.. +++|
T Consensus        93 L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~-l~~L  171 (310)
T 4glp_A           93 LKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVRA-FPAL  171 (310)
T ss_dssp             CCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCCC-CTTC
T ss_pred             eeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcchhhHHHhcc-CCCC
Confidence            6677777777777677666  667777777777777764333    22334666777777777765444443321 3333


Q ss_pred             Hhh--cCC-------c--ccccCCCCCCcEEEccCCeecccCCc----cCCCCCCCcEEEcccCcceeccCccccCC---
Q 039561           76 FMM--KGK-------A--FEYSTNLNVLRVIELSKNNFLGEIAK----GVTNPGASQTLNLSQNSFSRTIPESIGSM---  137 (190)
Q Consensus        76 ~~~--~~~-------~--~~~~~~~~~L~~L~l~~n~l~~~~p~----~~~~l~~L~~L~l~~n~l~~~~p~~l~~l---  137 (190)
                      ..+  ..+       +  ..+++.+++|++|++++|+++ .++.    .++.++.|++|++++|.+++..|..+..+   
T Consensus       172 ~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~l~~~~~~l~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~  250 (310)
T 4glp_A          172 TSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGME-TPTGVCAALAAAGVQPHSLDLSHNSLRATVNPSAPRCMWS  250 (310)
T ss_dssp             CEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCC-CHHHHHHHHHHHTCCCSSEECTTSCCCCCCCSCCSSCCCC
T ss_pred             CEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCC-chHHHHHHHHhcCCCCCEEECCCCCCCccchhhHHhccCc
Confidence            222  110       1  112345667777777777775 2222    13556777777777777776656666555   


Q ss_pred             CCCCEEeCCCCc-------------eEEeecccccccCCccccccccccccccCCccc
Q 039561          138 KSLESIDFSANH-------------YLNLSNNNLTGEIPSGIQLQGFHQSRFAGSELC  182 (190)
Q Consensus       138 ~~L~~l~l~~N~-------------~l~l~~N~l~g~~p~~~~~~~l~~~~~~~n~l~  182 (190)
                      ++|+.|++++|+             +||+++|.+++ +|....+.+++.+++++|.+.
T Consensus       251 ~~L~~L~Ls~N~l~~lp~~~~~~L~~L~Ls~N~l~~-~~~~~~l~~L~~L~L~~N~l~  307 (310)
T 4glp_A          251 SALNSLNLSFAGLEQVPKGLPAKLRVLDLSSNRLNR-APQPDELPEVDNLTLDGNPFL  307 (310)
T ss_dssp             TTCCCEECCSSCCCSCCSCCCSCCSCEECCSCCCCS-CCCTTSCCCCSCEECSSTTTS
T ss_pred             CcCCEEECCCCCCCchhhhhcCCCCEEECCCCcCCC-CchhhhCCCccEEECcCCCCC
Confidence            577777777765             67777777773 344345677777777777655

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=99.82  E-value=1.5e-19  Score=147.24  Aligned_cols=139  Identities=22%  Similarity=0.337  Sum_probs=83.4

Q ss_pred             CCCCCCcEEEcccCcccCcCCccccCCCCccEEeccCCcccC--CCcHHHHHHHHHHHhhcCCcccccCCCCCCcEEEcc
Q 039561           21 GALSSLESLHLHRNHLSGAIPLSLQNGTHFEVLDLRENAFIR--DVPKWIKKSLLALFMMKGKAFEYSTNLNVLRVIELS   98 (190)
Q Consensus        21 ~~l~~L~~l~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~--~~p~~~~~~~~~l~~~~~~~~~~~~~~~~L~~L~l~   98 (190)
                      ..+++|++|++++|.+++..|..+..+++|++|++++|.+.+  .+|..+                  +.+++|++|+++
T Consensus       321 ~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~------------------~~l~~L~~L~Ls  382 (520)
T 2z7x_B          321 SKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMT------------------TQMKSLQQLDIS  382 (520)
T ss_dssp             SSCCCCCEEECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHH------------------TTCTTCCEEECC
T ss_pred             hhCCcccEEEeECCccChhhhhhhccCCCCCEEEccCCccCccccchHHH------------------hhCCCCCEEECC
Confidence            455566666666666665555556666666666666666543  222222                  236666666666


Q ss_pred             CCeecccCCcc-CCCCCCCcEEEcccCcceeccCccccCCCCCCEEeCCCCc---------------eEEeecccccccC
Q 039561           99 KNNFLGEIAKG-VTNPGASQTLNLSQNSFSRTIPESIGSMKSLESIDFSANH---------------YLNLSNNNLTGEI  162 (190)
Q Consensus        99 ~n~l~~~~p~~-~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~l~l~~N~---------------~l~l~~N~l~g~~  162 (190)
                      +|.+.+.+|.. +..++.|+.|++++|.+++..|..+.  ++|+.|++++|+               ++++++|.++ .+
T Consensus       383 ~N~l~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~--~~L~~L~Ls~N~l~~ip~~~~~l~~L~~L~L~~N~l~-~l  459 (520)
T 2z7x_B          383 QNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCLP--PRIKVLDLHSNKIKSIPKQVVKLEALQELNVASNQLK-SV  459 (520)
T ss_dssp             SSCCBCCGGGCSCCCCTTCCEEECCSSCCCGGGGGSCC--TTCCEEECCSSCCCCCCGGGGGCTTCCEEECCSSCCC-CC
T ss_pred             CCcCCcccccchhccCccCCEEECcCCCCCcchhhhhc--ccCCEEECCCCcccccchhhhcCCCCCEEECCCCcCC-cc
Confidence            66666534442 55566666666666666655555443  566666666665               5677777777 56


Q ss_pred             Ccc-c-cccccccccccCCc
Q 039561          163 PSG-I-QLQGFHQSRFAGSE  180 (190)
Q Consensus       163 p~~-~-~~~~l~~~~~~~n~  180 (190)
                      |.. + .+.+++.+++++|.
T Consensus       460 ~~~~~~~l~~L~~L~l~~N~  479 (520)
T 2z7x_B          460 PDGIFDRLTSLQKIWLHTNP  479 (520)
T ss_dssp             CTTTTTTCTTCCEEECCSSC
T ss_pred             CHHHhccCCcccEEECcCCC
Confidence            654 3 56667777777773

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=99.81  E-value=8.4e-20  Score=130.75  Aligned_cols=126  Identities=20%  Similarity=0.203  Sum_probs=109.1

Q ss_pred             cceeccCCccccCCCcccCCCCCCcEEEcccCcccCcCCc-cccCCCCccEEeccCCcccCCCcHHHHHHHHHHHhhcCC
Q 039561            3 QQGLKIQHKFSRSFPTSTGALSSLESLHLHRNHLSGAIPL-SLQNGTHFEVLDLRENAFIRDVPKWIKKSLLALFMMKGK   81 (190)
Q Consensus         3 ~~L~l~~n~l~~~~p~~l~~l~~L~~l~l~~n~~~~~~~~-~~~~l~~L~~L~l~~n~~~~~~p~~~~~~~~~l~~~~~~   81 (190)
                      ++++++++.++. +|..+..  ++++|++++|.+++..+. .+..+++|++|++++|.+.+..|..+..           
T Consensus        11 ~~l~~s~~~l~~-ip~~~~~--~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~-----------   76 (192)
T 1w8a_A           11 TTVDCTGRGLKE-IPRDIPL--HTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEG-----------   76 (192)
T ss_dssp             TEEECTTSCCSS-CCSCCCT--TCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTT-----------
T ss_pred             CEEEcCCCCcCc-CccCCCC--CCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCC-----------
Confidence            578999999975 7776654  899999999999954443 3788999999999999988776766654           


Q ss_pred             cccccCCCCCCcEEEccCCeecccCCccCCCCCCCcEEEcccCcceeccCccccCCCCCCEEeCCCCc
Q 039561           82 AFEYSTNLNVLRVIELSKNNFLGEIAKGVTNPGASQTLNLSQNSFSRTIPESIGSMKSLESIDFSANH  149 (190)
Q Consensus        82 ~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~l~l~~N~  149 (190)
                             +++|++|++++|++++..+..+..+++|++|++++|.+++..|..+..+++|+.+++++|.
T Consensus        77 -------l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~  137 (192)
T 1w8a_A           77 -------ASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNP  137 (192)
T ss_dssp             -------CTTCCEEECCSCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCC
T ss_pred             -------cccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCC
Confidence                   8999999999999998778889999999999999999998889999999999988877776

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=99.81  E-value=1.7e-19  Score=131.82  Aligned_cols=128  Identities=16%  Similarity=0.182  Sum_probs=73.4

Q ss_pred             cceeccCCccccCCC-cccCCCCCCcEEEcccCcccCcCCccccCCCCccEEeccCCcccCCCcHHHHHHHHHHHhhcCC
Q 039561            3 QQGLKIQHKFSRSFP-TSTGALSSLESLHLHRNHLSGAIPLSLQNGTHFEVLDLRENAFIRDVPKWIKKSLLALFMMKGK   81 (190)
Q Consensus         3 ~~L~l~~n~l~~~~p-~~l~~l~~L~~l~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~~~~~l~~~~~~   81 (190)
                      ++|++++|.+++..+ ..+..+++|++|++++|.+++..+..|..+++|++|++++|.+.+..+..+..           
T Consensus        35 ~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~-----------  103 (220)
T 2v70_A           35 AELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLENVQHKMFKG-----------  103 (220)
T ss_dssp             SEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCCCCGGGGTT-----------
T ss_pred             CEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCCccCccCHhHhcC-----------
Confidence            455566666555433 23455666666666666665444445555666666666666654433333332           


Q ss_pred             cccccCCCCCCcEEEccCCeecccCCccCCCCCCCcEEEcccCcceeccCccccCCCCCCEEeCCCC
Q 039561           82 AFEYSTNLNVLRVIELSKNNFLGEIAKGVTNPGASQTLNLSQNSFSRTIPESIGSMKSLESIDFSAN  148 (190)
Q Consensus        82 ~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~l~l~~N  148 (190)
                             +++|++|++++|.+.+..|..+..+++|+.|++++|.+++..|..+..+++|+.+++++|
T Consensus       104 -------l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N  163 (220)
T 2v70_A          104 -------LESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLAN  163 (220)
T ss_dssp             -------CSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSC
T ss_pred             -------CcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCc
Confidence                   666666666666666555566666666666666666666555666666666665554444

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=99.81  E-value=1.3e-19  Score=132.50  Aligned_cols=148  Identities=14%  Similarity=0.121  Sum_probs=115.8

Q ss_pred             cceeccCCccccCCCcccCCCCCCcEEEcccCcccCcCC-ccccCCCCccEEeccCCcccCCCcHHHHHHHHHHHhhcCC
Q 039561            3 QQGLKIQHKFSRSFPTSTGALSSLESLHLHRNHLSGAIP-LSLQNGTHFEVLDLRENAFIRDVPKWIKKSLLALFMMKGK   81 (190)
Q Consensus         3 ~~L~l~~n~l~~~~p~~l~~l~~L~~l~l~~n~~~~~~~-~~~~~l~~L~~L~l~~n~~~~~~p~~~~~~~~~l~~~~~~   81 (190)
                      +++++++|.++. +|..+.  ..+++|++++|.+++..+ ..|..+++|++|++++|.+.+..+..+..           
T Consensus        14 ~~l~~s~n~l~~-iP~~~~--~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~-----------   79 (220)
T 2v70_A           14 TTVDCSNQKLNK-IPEHIP--QYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEG-----------   79 (220)
T ss_dssp             TEEECCSSCCSS-CCSCCC--TTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTT-----------
T ss_pred             CEeEeCCCCccc-CccCCC--CCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCC-----------
Confidence            578899999987 776654  457899999999995544 45788999999999999987655544444           


Q ss_pred             cccccCCCCCCcEEEccCCeecccCCccCCCCCCCcEEEcccCcceeccCccccCCCCCCEEeCCCCceEEeeccccccc
Q 039561           82 AFEYSTNLNVLRVIELSKNNFLGEIAKGVTNPGASQTLNLSQNSFSRTIPESIGSMKSLESIDFSANHYLNLSNNNLTGE  161 (190)
Q Consensus        82 ~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~l~l~~N~~l~l~~N~l~g~  161 (190)
                             +++|++|++++|.+.+..+..+..+++|++|++++|.+++..|..+..+++|+.|++        ++|.+++.
T Consensus        80 -------l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L--------~~N~l~~~  144 (220)
T 2v70_A           80 -------ASGVNEILLTSNRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSL--------YDNQITTV  144 (220)
T ss_dssp             -------CTTCCEEECCSSCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEEC--------TTSCCCCB
T ss_pred             -------CCCCCEEECCCCccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEEC--------CCCcCCEE
Confidence                   899999999999999777777999999999999999999888899999999997765        45555544


Q ss_pred             CCccc-cccccccccccCC
Q 039561          162 IPSGI-QLQGFHQSRFAGS  179 (190)
Q Consensus       162 ~p~~~-~~~~l~~~~~~~n  179 (190)
                      .|..+ .+.+++.+.+++|
T Consensus       145 ~~~~~~~l~~L~~L~L~~N  163 (220)
T 2v70_A          145 APGAFDTLHSLSTLNLLAN  163 (220)
T ss_dssp             CTTTTTTCTTCCEEECCSC
T ss_pred             CHHHhcCCCCCCEEEecCc
Confidence            44444 4555555555555

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=99.81  E-value=1.4e-20  Score=144.16  Aligned_cols=169  Identities=15%  Similarity=0.139  Sum_probs=104.1

Q ss_pred             cceeccCCccccCCCc---ccCCCCCCcEEEcccCcccCcCCccc--cCCCCccEEeccCCcccCCCcHHHHHHHHHHHh
Q 039561            3 QQGLKIQHKFSRSFPT---STGALSSLESLHLHRNHLSGAIPLSL--QNGTHFEVLDLRENAFIRDVPKWIKKSLLALFM   77 (190)
Q Consensus         3 ~~L~l~~n~l~~~~p~---~l~~l~~L~~l~l~~n~~~~~~~~~~--~~l~~L~~L~l~~n~~~~~~p~~~~~~~~~l~~   77 (190)
                      +.+.+.++.++...-.   .+..+++|++|++++|.+++..|..+  ..+++|++|++++|.+.+..+.....       
T Consensus        67 ~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~-------  139 (310)
T 4glp_A           67 RRLTVGAAQVPAQLLVGALRVLAYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAEL-------  139 (310)
T ss_dssp             CEEEECSCCCBHHHHHHHHHHHHHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHH-------
T ss_pred             eEEEEeCCcCCHHHHHHHHHhcccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHH-------
Confidence            4556666655432100   12235679999999999998888887  88999999999999988765522111       


Q ss_pred             hcCCcccccCCCCCCcEEEccCCeecccCCccCCCCCCCcEEEcccCcceec--cC--ccccCCCCCCEEeCCCCc----
Q 039561           78 MKGKAFEYSTNLNVLRVIELSKNNFLGEIAKGVTNPGASQTLNLSQNSFSRT--IP--ESIGSMKSLESIDFSANH----  149 (190)
Q Consensus        78 ~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~--~p--~~l~~l~~L~~l~l~~N~----  149 (190)
                             .+..+++|++|++++|.+.+..+..++.+++|++|++++|.+.+.  ++  ..+..+++|+.|++++|.    
T Consensus       140 -------~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l  212 (310)
T 4glp_A          140 -------QQWLKPGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETP  212 (310)
T ss_dssp             -------HTTBCSCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCH
T ss_pred             -------HhhhccCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCch
Confidence                   112356666666666666655555666666666666666665431  11  123455666666666665    


Q ss_pred             ---------------eEEeecccccccCCccc-cc---cccccccccCCcccCCC
Q 039561          150 ---------------YLNLSNNNLTGEIPSGI-QL---QGFHQSRFAGSELCGAP  185 (190)
Q Consensus       150 ---------------~l~l~~N~l~g~~p~~~-~~---~~l~~~~~~~n~l~~~~  185 (190)
                                     +||+++|.+++..|+.+ .+   .+++.+++++|.+...|
T Consensus       213 ~~~~~~l~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~~lp  267 (310)
T 4glp_A          213 TGVCAALAAAGVQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLEQVP  267 (310)
T ss_dssp             HHHHHHHHHHTCCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCCSCC
T ss_pred             HHHHHHHHhcCCCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCCCchh
Confidence                           56666666665545443 22   45666666666555444

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=99.81  E-value=1.2e-19  Score=152.14  Aligned_cols=146  Identities=21%  Similarity=0.174  Sum_probs=92.7

Q ss_pred             cceeccCCccccCCCcccCCCCCCcEEEcccCcccCcCCccccCCCCccEEeccCCcccCCCcHHHHHHHHHHHhhcCCc
Q 039561            3 QQGLKIQHKFSRSFPTSTGALSSLESLHLHRNHLSGAIPLSLQNGTHFEVLDLRENAFIRDVPKWIKKSLLALFMMKGKA   82 (190)
Q Consensus         3 ~~L~l~~n~l~~~~p~~l~~l~~L~~l~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~~~~~l~~~~~~~   82 (190)
                      ++|++++|.+++..+..+..+++|++|++++|.+++..|..+..+++|++|++++|.+.. +|.                
T Consensus        28 ~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~-l~~----------------   90 (680)
T 1ziw_A           28 TVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQ-LSD----------------   90 (680)
T ss_dssp             SEEECCSSCCCCCCGGGGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSCCCC-CCT----------------
T ss_pred             cEEECCCCCCCCcCHHHHhCCCcCcEEECCCCccCccCHHHHhcccCcCEEECCCCccCc-cCh----------------
Confidence            444444444444333334444444444444444443334444444444444444444332 221                


Q ss_pred             ccccCCCCCCcEEEccCCeecccCCccCCCCCCCcEEEcccCcceeccCccccCCCCCCEEeCCCCc-------------
Q 039561           83 FEYSTNLNVLRVIELSKNNFLGEIAKGVTNPGASQTLNLSQNSFSRTIPESIGSMKSLESIDFSANH-------------  149 (190)
Q Consensus        83 ~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~l~l~~N~-------------  149 (190)
                       ..++.+++|++|++++|.+.+..|..++.+++|++|++++|.+++..|..+..+++|+.|++++|.             
T Consensus        91 -~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~  169 (680)
T 1ziw_A           91 -KTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFA  169 (680)
T ss_dssp             -TTTTTCTTCSEEECCSSCCCCCCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSCCCCBCHHHHGGGT
T ss_pred             -hhhccCCCCCEEECCCCccCccChhHccccCCCCEEECCCCcccccCchhhcccccCCEEEccCCcccccCHHHhhccc
Confidence             134558888888888888876556778888888888888888887777778888888888888875             


Q ss_pred             -----eEEeecccccccCCccc
Q 039561          150 -----YLNLSNNNLTGEIPSGI  166 (190)
Q Consensus       150 -----~l~l~~N~l~g~~p~~~  166 (190)
                           ++++++|.+++..|..+
T Consensus       170 ~~~L~~L~L~~n~l~~~~~~~~  191 (680)
T 1ziw_A          170 NSSLKKLELSSNQIKEFSPGCF  191 (680)
T ss_dssp             TCEESEEECTTCCCCCBCTTGG
T ss_pred             cccccEEECCCCcccccChhhh
Confidence                 68888888886666544

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=99.81  E-value=9.6e-21  Score=145.52  Aligned_cols=178  Identities=18%  Similarity=0.123  Sum_probs=123.2

Q ss_pred             CcceeccCCccccCCCcccCCCCCCcEEEcccCcccCcCCccccCCCCccEEeccCCcccCCCcHHHHHHHHHHHhhcCC
Q 039561            2 LQQGLKIQHKFSRSFPTSTGALSSLESLHLHRNHLSGAIPLSLQNGTHFEVLDLRENAFIRDVPKWIKKSLLALFMMKGK   81 (190)
Q Consensus         2 L~~L~l~~n~l~~~~p~~l~~l~~L~~l~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~~~~~l~~~~~~   81 (190)
                      |++|++++|.+++..|..+..+++|++|++++|.+++..+  +..+++|++|++++|.+.+. +..  ..++.|..-...
T Consensus        36 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~Ls~n~l~~l-~~~--~~L~~L~l~~n~  110 (317)
T 3o53_A           36 VKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQEL-LVG--PSIETLHAANNN  110 (317)
T ss_dssp             CSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE--ETTCTTCCEEECCSSEEEEE-EEC--TTCCEEECCSSC
T ss_pred             CCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh--hhhcCCCCEEECcCCccccc-cCC--CCcCEEECCCCc
Confidence            6889999999998767789999999999999999985443  78899999999999997643 211  011111111111


Q ss_pred             ccc-ccCCCCCCcEEEccCCeecccCCccCCCCCCCcEEEcccCcceeccCccc-cCCCCCCEEeCCCCc----------
Q 039561           82 AFE-YSTNLNVLRVIELSKNNFLGEIAKGVTNPGASQTLNLSQNSFSRTIPESI-GSMKSLESIDFSANH----------  149 (190)
Q Consensus        82 ~~~-~~~~~~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~l-~~l~~L~~l~l~~N~----------  149 (190)
                      +.. ....+++|++|++++|.+.+..+..++.+++|++|++++|.+++..+..+ ..+++|+.|++++|.          
T Consensus       111 l~~~~~~~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~l  190 (317)
T 3o53_A          111 ISRVSCSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVKGQVVF  190 (317)
T ss_dssp             CSEEEECCCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEEECCCCC
T ss_pred             cCCcCccccCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcccHHHHhhccCcCCEEECCCCcCccccccccc
Confidence            110 11235667778888888776556667777788888888888776655555 356778888887776          


Q ss_pred             ----eEEeecccccccCCccc-cccccccccccCCcccCCC
Q 039561          150 ----YLNLSNNNLTGEIPSGI-QLQGFHQSRFAGSELCGAP  185 (190)
Q Consensus       150 ----~l~l~~N~l~g~~p~~~-~~~~l~~~~~~~n~l~~~~  185 (190)
                          +|++++|.+++ +|..+ .+.+++.+++++|.+...|
T Consensus       191 ~~L~~L~Ls~N~l~~-l~~~~~~l~~L~~L~L~~N~l~~l~  230 (317)
T 3o53_A          191 AKLKTLDLSSNKLAF-MGPEFQSAAGVTWISLRNNKLVLIE  230 (317)
T ss_dssp             TTCCEEECCSSCCCE-ECGGGGGGTTCSEEECTTSCCCEEC
T ss_pred             ccCCEEECCCCcCCc-chhhhcccCcccEEECcCCcccchh
Confidence                67777777774 33334 6777777777777666554

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=99.81  E-value=3.2e-19  Score=149.51  Aligned_cols=182  Identities=16%  Similarity=0.173  Sum_probs=139.9

Q ss_pred             CcceeccCCccccCCCcccCCCCCCcEEEcccCcccCcCC-ccccCCCCccEEeccCCcccCCCcHHHHHHHHHHHhh--
Q 039561            2 LQQGLKIQHKFSRSFPTSTGALSSLESLHLHRNHLSGAIP-LSLQNGTHFEVLDLRENAFIRDVPKWIKKSLLALFMM--   78 (190)
Q Consensus         2 L~~L~l~~n~l~~~~p~~l~~l~~L~~l~l~~n~~~~~~~-~~~~~l~~L~~L~l~~n~~~~~~p~~~~~~~~~l~~~--   78 (190)
                      |++|++++|.+++..|..+..+++|++|++++|.+++.+| ..+..+++|++|++++|.+.+..+..+.. ++.|..+  
T Consensus       383 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~-~~~L~~L~l  461 (680)
T 1ziw_A          383 LHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFAL-VPSLQRLML  461 (680)
T ss_dssp             CCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCEEECCSGGGTTCTTCCEEECCSCSEEECCTTTTTT-CTTCCEEEC
T ss_pred             CceEECCCCCCCeEChhhhhCCCCCCEEeCCCCcCccccCcccccCcccccEEecCCCCcceeChhhhhc-Ccccccchh
Confidence            5677788888888777788888999999999998876555 56778888999999998876555544432 3444222  


Q ss_pred             -------cCCcccccCCCCCCcEEEccCCeecccCCccCCCCCCCcEEEcccCcceeccC--------ccccCCCCCCEE
Q 039561           79 -------KGKAFEYSTNLNVLRVIELSKNNFLGEIAKGVTNPGASQTLNLSQNSFSRTIP--------ESIGSMKSLESI  143 (190)
Q Consensus        79 -------~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p--------~~l~~l~~L~~l  143 (190)
                             .+..|..+..+++|++|++++|++++..+..+..+++|+.|++++|.+++..+        ..+..+++|+.|
T Consensus       462 ~~n~l~~~~~~p~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L~~L  541 (680)
T 1ziw_A          462 RRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHIL  541 (680)
T ss_dssp             TTSCCBCTTCSSCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCGGGGSTTSTTSCCCTTTTCTTCCEE
T ss_pred             ccccccccccCCcccccCCCCCEEECCCCCCCcCChhhhccccccCEEeCCCCCccccchhhccCCcchhhcCCCCCCEE
Confidence                   13456778888999999999999986666778889999999999999885322        236788899999


Q ss_pred             eCCCCc----------------eEEeecccccccCCccc--cccccccccccCCcccCCC
Q 039561          144 DFSANH----------------YLNLSNNNLTGEIPSGI--QLQGFHQSRFAGSELCGAP  185 (190)
Q Consensus       144 ~l~~N~----------------~l~l~~N~l~g~~p~~~--~~~~l~~~~~~~n~l~~~~  185 (190)
                      ++++|.                ++++++|.++ .+|...  .+.+++.+++++|.+.+.+
T Consensus       542 ~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~-~l~~~~~~~l~~L~~L~L~~N~l~~~~  600 (680)
T 1ziw_A          542 NLESNGFDEIPVEVFKDLFELKIIDLGLNNLN-TLPASVFNNQVSLKSLNLQKNLITSVE  600 (680)
T ss_dssp             ECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECTTSCCCBCC
T ss_pred             ECCCCCCCCCCHHHcccccCcceeECCCCCCC-cCCHhHhCCCCCCCEEECCCCcCCccC
Confidence            999886                7899999998 555543  6788999999999887665

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=99.81  E-value=4.2e-19  Score=130.48  Aligned_cols=119  Identities=16%  Similarity=0.153  Sum_probs=57.9

Q ss_pred             ceeccCCccccCCCcccCCCCCCcEEEcccCcccCcCCccccCCCCccEEeccCCcccCCCcHHHHHHHHHHHhhcCCcc
Q 039561            4 QGLKIQHKFSRSFPTSTGALSSLESLHLHRNHLSGAIPLSLQNGTHFEVLDLRENAFIRDVPKWIKKSLLALFMMKGKAF   83 (190)
Q Consensus         4 ~L~l~~n~l~~~~p~~l~~l~~L~~l~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~~~~~l~~~~~~~~   83 (190)
                      +++.+++.++. +|..+.  ++|++|++++|.+++..|..|..+++|++|++++|.+....+..+.              
T Consensus        23 ~v~c~~~~l~~-ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~--------------   85 (229)
T 3e6j_A           23 TVDCRSKRHAS-VPAGIP--TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFD--------------   85 (229)
T ss_dssp             EEECTTSCCSS-CCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTT--------------
T ss_pred             EeEccCCCcCc-cCCCCC--CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcc--------------
Confidence            34444544443 443332  4555555555555544444555555555555555554322112222              


Q ss_pred             cccCCCCCCcEEEccCCeecccCCccCCCCCCCcEEEcccCcceeccCccccCCCCCCEEe
Q 039561           84 EYSTNLNVLRVIELSKNNFLGEIAKGVTNPGASQTLNLSQNSFSRTIPESIGSMKSLESID  144 (190)
Q Consensus        84 ~~~~~~~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~l~  144 (190)
                          .+++|++|++++|.+++..+..+..+++|+.|++++|.++ .+|..+..+++|+.|+
T Consensus        86 ----~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~  141 (229)
T 3e6j_A           86 ----SLTQLTVLDLGTNQLTVLPSAVFDRLVHLKELFMCCNKLT-ELPRGIERLTHLTHLA  141 (229)
T ss_dssp             ----TCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-SCCTTGGGCTTCSEEE
T ss_pred             ----cCCCcCEEECCCCcCCccChhHhCcchhhCeEeccCCccc-ccCcccccCCCCCEEE
Confidence                2455555555555555333333455555555555555555 4455555555555443

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=99.81  E-value=1.8e-19  Score=147.91  Aligned_cols=161  Identities=18%  Similarity=0.149  Sum_probs=133.5

Q ss_pred             CCcceeccCCccccCCCcccCCCCCCcEEEcccCcccCcCCccccCCCCccEEeccCCcccCCCcHHHHHHHHHHHhhcC
Q 039561            1 MLQQGLKIQHKFSRSFPTSTGALSSLESLHLHRNHLSGAIPLSLQNGTHFEVLDLRENAFIRDVPKWIKKSLLALFMMKG   80 (190)
Q Consensus         1 ~L~~L~l~~n~l~~~~p~~l~~l~~L~~l~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~~~~~l~~~~~   80 (190)
                      ++++|++++|.+++..+..+..+++|++|++++|.+++..+..|..+++|++|++++|.+....|..+..          
T Consensus        29 ~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~----------   98 (570)
T 2z63_A           29 STKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSG----------   98 (570)
T ss_dssp             SCCEEECCSCCCCEECTTTTTTCSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTT----------
T ss_pred             cccEEEccCCccCccChhHhhCCCCceEEECCCCcCCccCcccccCchhCCEEeCcCCcCCccCHhhhcC----------
Confidence            3688999999999877778999999999999999998666677889999999999999977655555544          


Q ss_pred             CcccccCCCCCCcEEEccCCeecccCCccCCCCCCCcEEEcccCccee-ccCccccCCCCCCEEeCCCCc----------
Q 039561           81 KAFEYSTNLNVLRVIELSKNNFLGEIAKGVTNPGASQTLNLSQNSFSR-TIPESIGSMKSLESIDFSANH----------  149 (190)
Q Consensus        81 ~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~-~~p~~l~~l~~L~~l~l~~N~----------  149 (190)
                              +++|++|++++|.+.+..+..++.+++|++|++++|.+++ .+|..++.+++|+.|++++|.          
T Consensus        99 --------l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~l~~~~~~~~~  170 (570)
T 2z63_A           99 --------LSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLR  170 (570)
T ss_dssp             --------CTTCCEEECTTSCCCCSTTCSCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSCCCEECGGGGH
T ss_pred             --------ccccccccccccccccCCCccccccccccEEecCCCccceecChhhhcccCCCCEEeCcCCccceecHHHcc
Confidence                    8899999999999885444468899999999999999986 368889999999999999885          


Q ss_pred             ----------eEEeecccccccCCccccccccccccccCC
Q 039561          150 ----------YLNLSNNNLTGEIPSGIQLQGFHQSRFAGS  179 (190)
Q Consensus       150 ----------~l~l~~N~l~g~~p~~~~~~~l~~~~~~~n  179 (190)
                                .+++++|.+++..|..+...+++.+.+++|
T Consensus       171 ~l~~L~~~~~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n  210 (570)
T 2z63_A          171 VLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKLTLRNN  210 (570)
T ss_dssp             HHHTCTTCCCEEECTTCCCCEECTTTTTTCEEEEEEEESC
T ss_pred             chhccchhhhhcccCCCCceecCHHHhccCcceeEecccc
Confidence                      478899999877676665557788877776

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=99.81  E-value=3e-19  Score=131.22  Aligned_cols=129  Identities=20%  Similarity=0.178  Sum_probs=109.9

Q ss_pred             CCcceeccCCccccCCCcccCCCCCCcEEEcccCcccCcCCccccCCCCccEEeccCCcccCCCcHHHHHHHHHHHhhcC
Q 039561            1 MLQQGLKIQHKFSRSFPTSTGALSSLESLHLHRNHLSGAIPLSLQNGTHFEVLDLRENAFIRDVPKWIKKSLLALFMMKG   80 (190)
Q Consensus         1 ~L~~L~l~~n~l~~~~p~~l~~l~~L~~l~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~~~~~l~~~~~   80 (190)
                      .|++|++++|.+++..|..+..+++|++|++++|.++...+..|..+++|++|++++|.+.+..+..+.           
T Consensus        41 ~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~-----------  109 (229)
T 3e6j_A           41 NAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQLTVLPSAVFD-----------  109 (229)
T ss_dssp             TCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTT-----------
T ss_pred             CCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCCCcCCccChhHhC-----------
Confidence            378999999999998788899999999999999999854446678899999999999998754444343           


Q ss_pred             CcccccCCCCCCcEEEccCCeecccCCccCCCCCCCcEEEcccCcceeccCccccCCCCCCEEeCCCC
Q 039561           81 KAFEYSTNLNVLRVIELSKNNFLGEIAKGVTNPGASQTLNLSQNSFSRTIPESIGSMKSLESIDFSAN  148 (190)
Q Consensus        81 ~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~l~l~~N  148 (190)
                             .+++|++|++++|++. .+|..+..+++|+.|++++|.+++..+..+..+++|+.+++++|
T Consensus       110 -------~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N  169 (229)
T 3e6j_A          110 -------RLVHLKELFMCCNKLT-ELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGN  169 (229)
T ss_dssp             -------TCTTCCEEECCSSCCC-SCCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTS
T ss_pred             -------cchhhCeEeccCCccc-ccCcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCC
Confidence                   3899999999999998 88988999999999999999999666667888999997664444

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=99.80  E-value=1.5e-19  Score=155.00  Aligned_cols=164  Identities=22%  Similarity=0.218  Sum_probs=129.6

Q ss_pred             CCcceeccCCccccCCCcccCCCCCCcEEEcccCcccCcC-CccccCCCCccEEeccCCcccCCCcHHHHHHHHHHHhhc
Q 039561            1 MLQQGLKIQHKFSRSFPTSTGALSSLESLHLHRNHLSGAI-PLSLQNGTHFEVLDLRENAFIRDVPKWIKKSLLALFMMK   79 (190)
Q Consensus         1 ~L~~L~l~~n~l~~~~p~~l~~l~~L~~l~l~~n~~~~~~-~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~~~~~l~~~~   79 (190)
                      ++++|++++|.+++..|..+.++++|++|++++|...+.+ |..|..+++|++|++++|.+.+..|..+.          
T Consensus        25 ~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~~~----------   94 (844)
T 3j0a_A           25 TTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQ----------   94 (844)
T ss_dssp             TCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECTTSSC----------
T ss_pred             CcCEEECCCCcCCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccCHhHcc----------
Confidence            3678899999998877888999999999999998655455 67788899999999999988766666554          


Q ss_pred             CCcccccCCCCCCcEEEccCCeecccCCcc--CCCCCCCcEEEcccCcceeccC-ccccCCCCCCEEeCCCCc-------
Q 039561           80 GKAFEYSTNLNVLRVIELSKNNFLGEIAKG--VTNPGASQTLNLSQNSFSRTIP-ESIGSMKSLESIDFSANH-------  149 (190)
Q Consensus        80 ~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~--~~~l~~L~~L~l~~n~l~~~~p-~~l~~l~~L~~l~l~~N~-------  149 (190)
                              .+++|++|++++|.+.+.+|..  ++.+++|++|++++|.+++..+ ..++.+++|+.|++++|.       
T Consensus        95 --------~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~  166 (844)
T 3j0a_A           95 --------GLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEH  166 (844)
T ss_dssp             --------SCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCSG
T ss_pred             --------CCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCeeCHH
Confidence                    4889999999999988766654  8889999999999999886554 578889999988888885       


Q ss_pred             -----------eEEeecccccccCCccc-ccc------ccccccccCCccc
Q 039561          150 -----------YLNLSNNNLTGEIPSGI-QLQ------GFHQSRFAGSELC  182 (190)
Q Consensus       150 -----------~l~l~~N~l~g~~p~~~-~~~------~l~~~~~~~n~l~  182 (190)
                                 .++++.|.+.+..|..+ ...      .++.+.+++|.+.
T Consensus       167 ~l~~l~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~  217 (844)
T 3j0a_A          167 ELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWT  217 (844)
T ss_dssp             GGHHHHHCSSCCCEECCSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSS
T ss_pred             HcccccCCccceEECCCCccccccccchhhcCCccccCceeEEecCCCcCc
Confidence                       57888888887777654 222      3777888887554

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=99.80  E-value=2.7e-19  Score=147.17  Aligned_cols=142  Identities=18%  Similarity=0.259  Sum_probs=99.3

Q ss_pred             CCCCCCcEEEcccCcccCcCCccccCCCCccEEeccCCcccCCCcHHHHHHHHHHHhhcCCcccccCCCCCCcEEEccCC
Q 039561           21 GALSSLESLHLHRNHLSGAIPLSLQNGTHFEVLDLRENAFIRDVPKWIKKSLLALFMMKGKAFEYSTNLNVLRVIELSKN  100 (190)
Q Consensus        21 ~~l~~L~~l~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~~~~~l~~~~~~~~~~~~~~~~L~~L~l~~n  100 (190)
                      ..+++|++|++++|.+++..|..+..+++|++|++++|.+.+ ++...               ..+..+++|++|++++|
T Consensus       350 ~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~-~~~~~---------------~~~~~l~~L~~L~l~~N  413 (562)
T 3a79_B          350 PSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKN-FFKVA---------------LMTKNMSSLETLDVSLN  413 (562)
T ss_dssp             SSCCCCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSSCCCB-TTHHH---------------HTTTTCTTCCEEECTTS
T ss_pred             cCCCCceEEECCCCccccchhhhhcccCCCCEEECCCCCcCC-cccch---------------hhhcCCCCCCEEECCCC
Confidence            567778888888888886677777778888888888887654 22111               12334777777777777


Q ss_pred             eecccCCc-cCCCCCCCcEEEcccCcceeccCccccCCCCCCEEeCCCCc---------------eEEeecccccccCCc
Q 039561          101 NFLGEIAK-GVTNPGASQTLNLSQNSFSRTIPESIGSMKSLESIDFSANH---------------YLNLSNNNLTGEIPS  164 (190)
Q Consensus       101 ~l~~~~p~-~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~l~l~~N~---------------~l~l~~N~l~g~~p~  164 (190)
                      .+.+.+|. .+..+++|+.|++++|.+++..|..+.  ++|+.|++++|+               +|++++|.++ .+|.
T Consensus       414 ~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~--~~L~~L~L~~N~l~~ip~~~~~l~~L~~L~L~~N~l~-~l~~  490 (562)
T 3a79_B          414 SLNSHAYDRTCAWAESILVLNLSSNMLTGSVFRCLP--PKVKVLDLHNNRIMSIPKDVTHLQALQELNVASNQLK-SVPD  490 (562)
T ss_dssp             CCBSCCSSCCCCCCTTCCEEECCSSCCCGGGGSSCC--TTCSEEECCSSCCCCCCTTTTSSCCCSEEECCSSCCC-CCCT
T ss_pred             cCCCccChhhhcCcccCCEEECCCCCCCcchhhhhc--CcCCEEECCCCcCcccChhhcCCCCCCEEECCCCCCC-CCCH
Confidence            77754554 366677777777777777766665443  567777777775               6888888888 6776


Q ss_pred             c-c-cccccccccccCCcc
Q 039561          165 G-I-QLQGFHQSRFAGSEL  181 (190)
Q Consensus       165 ~-~-~~~~l~~~~~~~n~l  181 (190)
                      . + .+.+++.+++++|.+
T Consensus       491 ~~~~~l~~L~~L~l~~N~~  509 (562)
T 3a79_B          491 GVFDRLTSLQYIWLHDNPW  509 (562)
T ss_dssp             TSTTTCTTCCCEECCSCCB
T ss_pred             HHHhcCCCCCEEEecCCCc
Confidence            5 4 677888888888833

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=99.80  E-value=3e-19  Score=136.77  Aligned_cols=172  Identities=17%  Similarity=0.251  Sum_probs=112.2

Q ss_pred             CcceeccCCccccCCCcccCCCCCCcEEEcccCcccCcCCccccCCCCccEEeccCCcccCCCcHHHHHHHHHHHhhc--
Q 039561            2 LQQGLKIQHKFSRSFPTSTGALSSLESLHLHRNHLSGAIPLSLQNGTHFEVLDLRENAFIRDVPKWIKKSLLALFMMK--   79 (190)
Q Consensus         2 L~~L~l~~n~l~~~~p~~l~~l~~L~~l~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~~~~~l~~~~--   79 (190)
                      |++|++++|.++. ++ .+..+++|++|++++|.++ .++. +..+++|++|++++|.+.+ ++ .+.. +++|..+.  
T Consensus        43 L~~L~l~~~~i~~-l~-~~~~l~~L~~L~L~~n~i~-~~~~-~~~l~~L~~L~L~~n~l~~-~~-~~~~-l~~L~~L~l~  115 (308)
T 1h6u_A           43 ITTLSAFGTGVTT-IE-GVQYLNNLIGLELKDNQIT-DLAP-LKNLTKITELELSGNPLKN-VS-AIAG-LQSIKTLDLT  115 (308)
T ss_dssp             CCEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCC-CCGG-GTTCCSCCEEECCSCCCSC-CG-GGTT-CTTCCEEECT
T ss_pred             cCEEEeeCCCccC-ch-hhhccCCCCEEEccCCcCC-CChh-HccCCCCCEEEccCCcCCC-ch-hhcC-CCCCCEEECC
Confidence            5677777777765 44 5667777777777777777 3443 6677777777777777554 22 2221 23332220  


Q ss_pred             C-Cc--ccccCCCCCCcEEEccCCeecccCCccCCCCCCCcEEEcccCcceeccCccccCCCCCCEEeCCCCc-------
Q 039561           80 G-KA--FEYSTNLNVLRVIELSKNNFLGEIAKGVTNPGASQTLNLSQNSFSRTIPESIGSMKSLESIDFSANH-------  149 (190)
Q Consensus        80 ~-~~--~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~l~l~~N~-------  149 (190)
                      + .+  ...+..+++|++|++++|.+.+ ++. ++.+++|+.|++++|.+++ ++. +..+++|+.|++++|.       
T Consensus       116 ~n~l~~~~~l~~l~~L~~L~l~~n~l~~-~~~-l~~l~~L~~L~l~~n~l~~-~~~-l~~l~~L~~L~l~~n~l~~~~~l  191 (308)
T 1h6u_A          116 STQITDVTPLAGLSNLQVLYLDLNQITN-ISP-LAGLTNLQYLSIGNAQVSD-LTP-LANLSKLTTLKADDNKISDISPL  191 (308)
T ss_dssp             TSCCCCCGGGTTCTTCCEEECCSSCCCC-CGG-GGGCTTCCEEECCSSCCCC-CGG-GTTCTTCCEEECCSSCCCCCGGG
T ss_pred             CCCCCCchhhcCCCCCCEEECCCCccCc-Ccc-ccCCCCccEEEccCCcCCC-Chh-hcCCCCCCEEECCCCccCcChhh
Confidence            0 00  1124557778888888888763 333 6777888888888888874 333 7777888888888876       


Q ss_pred             -------eEEeecccccccCCccccccccccccccCCcccCCC
Q 039561          150 -------YLNLSNNNLTGEIPSGIQLQGFHQSRFAGSELCGAP  185 (190)
Q Consensus       150 -------~l~l~~N~l~g~~p~~~~~~~l~~~~~~~n~l~~~~  185 (190)
                             +|++++|.++ .+|+...+.+++.+.+++|.+++.|
T Consensus       192 ~~l~~L~~L~L~~N~l~-~~~~l~~l~~L~~L~l~~N~i~~~~  233 (308)
T 1h6u_A          192 ASLPNLIEVHLKNNQIS-DVSPLANTSNLFIVTLTNQTITNQP  233 (308)
T ss_dssp             GGCTTCCEEECTTSCCC-BCGGGTTCTTCCEEEEEEEEEECCC
T ss_pred             cCCCCCCEEEccCCccC-ccccccCCCCCCEEEccCCeeecCC
Confidence                   6888888887 4444446778888888888776654

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=99.80  E-value=1.5e-19  Score=148.44  Aligned_cols=161  Identities=17%  Similarity=0.161  Sum_probs=83.0

Q ss_pred             CcceeccCCccccCC--CcccCCCCCCcEEEcccCcccCcCCccccCCCCccEEeccCCcccCCCcHHHHHHHHHHHhhc
Q 039561            2 LQQGLKIQHKFSRSF--PTSTGALSSLESLHLHRNHLSGAIPLSLQNGTHFEVLDLRENAFIRDVPKWIKKSLLALFMMK   79 (190)
Q Consensus         2 L~~L~l~~n~l~~~~--p~~l~~l~~L~~l~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~~~~~l~~~~   79 (190)
                      |++|++++|.+++..  +..+..+++|++|++++|.++ .++..+..+++|++|++++|.+.+..+.             
T Consensus       349 L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~-~~~~~~~~l~~L~~L~l~~n~l~~~~~~-------------  414 (570)
T 2z63_A          349 LEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEF-------------  414 (570)
T ss_dssp             CCEEECCSSCCBEEEEEEHHHHTCSCCCEEECCSCSEE-EEEEEEETCTTCCEEECTTSEEESCTTS-------------
T ss_pred             CCEEeCcCCccCccccccccccccCccCEEECCCCccc-cccccccccCCCCEEEccCCccccccch-------------
Confidence            445555555554422  334445555555555555555 2333355555666666666555443331             


Q ss_pred             CCcccccCCCCCCcEEEccCCeecccCCccCCCCCCCcEEEcccCcce-eccCccccCCCCCCEEeCCCCc---------
Q 039561           80 GKAFEYSTNLNVLRVIELSKNNFLGEIAKGVTNPGASQTLNLSQNSFS-RTIPESIGSMKSLESIDFSANH---------  149 (190)
Q Consensus        80 ~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~-~~~p~~l~~l~~L~~l~l~~N~---------  149 (190)
                          ..+..+++|++|++++|.+.+..|..+..+++|+.|++++|.++ +.+|..+..+++|+.|++++|.         
T Consensus       415 ----~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~  490 (570)
T 2z63_A          415 ----SVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAF  490 (570)
T ss_dssp             ----CTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTT
T ss_pred             ----hhhhcCCCCCEEeCcCCcccccchhhhhcCCcCcEEECcCCcCccccchhhhhcccCCCEEECCCCccccCChhhh
Confidence                12223455555555555554444444555555555555555554 3344455555555555555553         


Q ss_pred             -------eEEeecccccccCCccc-cccccccccccCCc
Q 039561          150 -------YLNLSNNNLTGEIPSGI-QLQGFHQSRFAGSE  180 (190)
Q Consensus       150 -------~l~l~~N~l~g~~p~~~-~~~~l~~~~~~~n~  180 (190)
                             +|++++|.+++..|..+ .+.+++.+++++|.
T Consensus       491 ~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~  529 (570)
T 2z63_A          491 NSLSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTNP  529 (570)
T ss_dssp             TTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSC
T ss_pred             hcccCCCEEeCCCCcCCCCCHHHhhcccCCcEEEecCCc
Confidence                   56666666665444444 56666666666663

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=99.80  E-value=1.5e-19  Score=129.85  Aligned_cols=149  Identities=13%  Similarity=0.180  Sum_probs=104.5

Q ss_pred             CcceeccCCccccCCCcccCCCCCCcEEEcccCcccCcCCccccCCCCccEEeccCCcccCCCcHHHHHHHHHHHhhcCC
Q 039561            2 LQQGLKIQHKFSRSFPTSTGALSSLESLHLHRNHLSGAIPLSLQNGTHFEVLDLRENAFIRDVPKWIKKSLLALFMMKGK   81 (190)
Q Consensus         2 L~~L~l~~n~l~~~~p~~l~~l~~L~~l~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~~~~~l~~~~~~   81 (190)
                      |++|++++|.++. +| .+..+++|++|++++|.++ .++ .+..+++|++|++++|.+.+..+..+.            
T Consensus        46 L~~L~l~~n~i~~-l~-~l~~l~~L~~L~l~~n~~~-~~~-~l~~l~~L~~L~l~~n~l~~~~~~~l~------------  109 (197)
T 4ezg_A           46 LTYITLANINVTD-LT-GIEYAHNIKDLTINNIHAT-NYN-PISGLSNLERLRIMGKDVTSDKIPNLS------------  109 (197)
T ss_dssp             CCEEEEESSCCSC-CT-TGGGCTTCSEEEEESCCCS-CCG-GGTTCTTCCEEEEECTTCBGGGSCCCT------------
T ss_pred             ccEEeccCCCccC-hH-HHhcCCCCCEEEccCCCCC-cch-hhhcCCCCCEEEeECCccCcccChhhc------------
Confidence            5677788887774 55 5777788888888888665 333 566777888888888777654444443            


Q ss_pred             cccccCCCCCCcEEEccCCeecccCCccCCCCCCCcEEEcccCc-ceeccCccccCCCCCCEEeCCCCceEEeecccccc
Q 039561           82 AFEYSTNLNVLRVIELSKNNFLGEIAKGVTNPGASQTLNLSQNS-FSRTIPESIGSMKSLESIDFSANHYLNLSNNNLTG  160 (190)
Q Consensus        82 ~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~-l~~~~p~~l~~l~~L~~l~l~~N~~l~l~~N~l~g  160 (190)
                            .+++|++|++++|.+.+..|..++.+++|++|++++|. ++ .+| .+..+++|+.        |++++|.++ 
T Consensus       110 ------~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~-~~~-~l~~l~~L~~--------L~l~~n~i~-  172 (197)
T 4ezg_A          110 ------GLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAIT-DIM-PLKTLPELKS--------LNIQFDGVH-  172 (197)
T ss_dssp             ------TCTTCCEEECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCC-CCG-GGGGCSSCCE--------EECTTBCCC-
T ss_pred             ------CCCCCCEEEecCCccCcHhHHHHhhCCCCCEEEccCCCCcc-ccH-hhcCCCCCCE--------EECCCCCCc-
Confidence                  37778888888888876667777778888888888887 55 454 5677777775        457777777 


Q ss_pred             cCCccccccccccccccCCcccC
Q 039561          161 EIPSGIQLQGFHQSRFAGSELCG  183 (190)
Q Consensus       161 ~~p~~~~~~~l~~~~~~~n~l~~  183 (190)
                      .++....+.+++.+++++|.+.+
T Consensus       173 ~~~~l~~l~~L~~L~l~~N~i~~  195 (197)
T 4ezg_A          173 DYRGIEDFPKLNQLYAFSQTIGG  195 (197)
T ss_dssp             CCTTGGGCSSCCEEEECBC----
T ss_pred             ChHHhccCCCCCEEEeeCcccCC
Confidence            45644478899999999997653

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=99.79  E-value=9.1e-20  Score=140.77  Aligned_cols=175  Identities=15%  Similarity=0.138  Sum_probs=109.7

Q ss_pred             CCcceeccCCccccCCCcccCCCCCCcEEEcccCcccCcCCccccCCCCccEEeccCCcccC--CCcHHHHHHHHHHHhh
Q 039561            1 MLQQGLKIQHKFSRSFPTSTGALSSLESLHLHRNHLSGAIPLSLQNGTHFEVLDLRENAFIR--DVPKWIKKSLLALFMM   78 (190)
Q Consensus         1 ~L~~L~l~~n~l~~~~p~~l~~l~~L~~l~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~--~~p~~~~~~~~~l~~~   78 (190)
                      .|++|++++|.++. +|..+.  ++|++|++++|.++...+..+..+++|+.|++++|.+..  ..+..+.. + +|..+
T Consensus       103 ~L~~L~L~~n~l~~-l~~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~-l-~L~~L  177 (332)
T 2ft3_A          103 KLQKLYISKNHLVE-IPPNLP--SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDG-L-KLNYL  177 (332)
T ss_dssp             TCCEEECCSSCCCS-CCSSCC--TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCS-C-CCSCC
T ss_pred             CCCEEECCCCcCCc-cCcccc--ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccC-C-ccCEE
Confidence            36778888888874 665554  778888888888874444557778888888888887642  33332221 1 22111


Q ss_pred             c--C----CcccccCCCCCCcEEEccCCeecccCCccCCCCCCCcEEEcccCcceeccCccccCCCCCCEEeCCCCc---
Q 039561           79 K--G----KAFEYSTNLNVLRVIELSKNNFLGEIAKGVTNPGASQTLNLSQNSFSRTIPESIGSMKSLESIDFSANH---  149 (190)
Q Consensus        79 ~--~----~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~l~l~~N~---  149 (190)
                      .  .    .+|..+  .++|++|++++|.+.+..+..+..+++|+.|++++|.+++..+..+..+++|+.|++++|.   
T Consensus       178 ~l~~n~l~~l~~~~--~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~  255 (332)
T 2ft3_A          178 RISEAKLTGIPKDL--PETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLSR  255 (332)
T ss_dssp             BCCSSBCSSCCSSS--CSSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSCCCB
T ss_pred             ECcCCCCCccCccc--cCCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCCcCee
Confidence            0  0    122222  1467777777777765555667777777777777777775555567777777777777775   


Q ss_pred             ------------eEEeecccccccCCccc-c------ccccccccccCCccc
Q 039561          150 ------------YLNLSNNNLTGEIPSGI-Q------LQGFHQSRFAGSELC  182 (190)
Q Consensus       150 ------------~l~l~~N~l~g~~p~~~-~------~~~l~~~~~~~n~l~  182 (190)
                                  ++++++|.+++..+..+ .      ...++.+.+.+|.+.
T Consensus       256 lp~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~~~  307 (332)
T 2ft3_A          256 VPAGLPDLKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPVP  307 (332)
T ss_dssp             CCTTGGGCTTCCEEECCSSCCCBCCTTSSSCSSCCSSSCCBSEEECCSSSSC
T ss_pred             cChhhhcCccCCEEECCCCCCCccChhHccccccccccccccceEeecCccc
Confidence                        67788888874333332 1      345677778888443

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=99.79  E-value=4.6e-19  Score=144.31  Aligned_cols=103  Identities=30%  Similarity=0.378  Sum_probs=80.9

Q ss_pred             ccccCCCCCCcEEEccCCeecc--cCCccCCCCCCCcEEEcccCcceeccCc-cccCCCCCCEEeCCCCc----------
Q 039561           83 FEYSTNLNVLRVIELSKNNFLG--EIAKGVTNPGASQTLNLSQNSFSRTIPE-SIGSMKSLESIDFSANH----------  149 (190)
Q Consensus        83 ~~~~~~~~~L~~L~l~~n~l~~--~~p~~~~~l~~L~~L~l~~n~l~~~~p~-~l~~l~~L~~l~l~~N~----------  149 (190)
                      |..++.+++|++|++++|++.+  .+|..++.+++|++|++++|.+++.+|. .+..+++|+.|++++|.          
T Consensus       341 ~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~  420 (520)
T 2z7x_B          341 FENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCLP  420 (520)
T ss_dssp             TTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGCSCCCCTTCCEEECCSSCCCGGGGGSCC
T ss_pred             hhhhccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCcccccchhccCccCCEEECcCCCCCcchhhhhc
Confidence            3445557888888888888875  4556677888888888888888864665 37778888888888885          


Q ss_pred             ----eEEeecccccccCCccc-cccccccccccCCcccCCCC
Q 039561          150 ----YLNLSNNNLTGEIPSGI-QLQGFHQSRFAGSELCGAPF  186 (190)
Q Consensus       150 ----~l~l~~N~l~g~~p~~~-~~~~l~~~~~~~n~l~~~~~  186 (190)
                          +|++++|.++ .+|+.+ .+.+++.+++++|.+...|.
T Consensus       421 ~~L~~L~Ls~N~l~-~ip~~~~~l~~L~~L~L~~N~l~~l~~  461 (520)
T 2z7x_B          421 PRIKVLDLHSNKIK-SIPKQVVKLEALQELNVASNQLKSVPD  461 (520)
T ss_dssp             TTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCCCCT
T ss_pred             ccCCEEECCCCccc-ccchhhhcCCCCCEEECCCCcCCccCH
Confidence                7899999998 888866 78899999999998887764

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=99.78  E-value=1.8e-18  Score=132.45  Aligned_cols=167  Identities=13%  Similarity=0.260  Sum_probs=114.5

Q ss_pred             ccCCccccCCCcccCCCCCCcEEEcccCcccCcCCccccCCCCccEEeccCCcccCCCcHHHHHHHHHHHhh--cCC---
Q 039561            7 KIQHKFSRSFPTSTGALSSLESLHLHRNHLSGAIPLSLQNGTHFEVLDLRENAFIRDVPKWIKKSLLALFMM--KGK---   81 (190)
Q Consensus         7 l~~n~l~~~~p~~l~~l~~L~~l~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~~~~~l~~~--~~~---   81 (190)
                      +..+.+++.+  ....+++|++|++++|.++ .++ .+..+++|++|++++|.+.+. +. +. .+++|..+  .+.   
T Consensus        26 l~~~~~~~~~--~~~~l~~L~~L~l~~~~i~-~l~-~~~~l~~L~~L~L~~n~i~~~-~~-~~-~l~~L~~L~L~~n~l~   98 (308)
T 1h6u_A           26 AGKSNVTDTV--TQADLDGITTLSAFGTGVT-TIE-GVQYLNNLIGLELKDNQITDL-AP-LK-NLTKITELELSGNPLK   98 (308)
T ss_dssp             TTCSSTTSEE--CHHHHHTCCEEECTTSCCC-CCT-TGGGCTTCCEEECCSSCCCCC-GG-GT-TCCSCCEEECCSCCCS
T ss_pred             hCCCCcCcee--cHHHcCCcCEEEeeCCCcc-Cch-hhhccCCCCEEEccCCcCCCC-hh-Hc-cCCCCCEEEccCCcCC
Confidence            3444444422  3456889999999999998 566 578899999999999997653 33 33 24444322  111   


Q ss_pred             cccccCCCCCCcEEEccCCeecccCCccCCCCCCCcEEEcccCcceeccCccccCCCCCCEEeCCCCc------------
Q 039561           82 AFEYSTNLNVLRVIELSKNNFLGEIAKGVTNPGASQTLNLSQNSFSRTIPESIGSMKSLESIDFSANH------------  149 (190)
Q Consensus        82 ~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~l~l~~N~------------  149 (190)
                      ....+..+++|++|++++|.+.+ ++. +..+++|+.|++++|.+++. +. +..+++|+.|++++|.            
T Consensus        99 ~~~~~~~l~~L~~L~l~~n~l~~-~~~-l~~l~~L~~L~l~~n~l~~~-~~-l~~l~~L~~L~l~~n~l~~~~~l~~l~~  174 (308)
T 1h6u_A           99 NVSAIAGLQSIKTLDLTSTQITD-VTP-LAGLSNLQVLYLDLNQITNI-SP-LAGLTNLQYLSIGNAQVSDLTPLANLSK  174 (308)
T ss_dssp             CCGGGTTCTTCCEEECTTSCCCC-CGG-GTTCTTCCEEECCSSCCCCC-GG-GGGCTTCCEEECCSSCCCCCGGGTTCTT
T ss_pred             CchhhcCCCCCCEEECCCCCCCC-chh-hcCCCCCCEEECCCCccCcC-cc-ccCCCCccEEEccCCcCCCChhhcCCCC
Confidence            12345667777888888777763 343 67777888888888877743 33 6777788888888776            


Q ss_pred             --eEEeecccccccCCccccccccccccccCCcccCCC
Q 039561          150 --YLNLSNNNLTGEIPSGIQLQGFHQSRFAGSELCGAP  185 (190)
Q Consensus       150 --~l~l~~N~l~g~~p~~~~~~~l~~~~~~~n~l~~~~  185 (190)
                        +|++++|.++ .+|....+.+++.+.+++|.+.+.+
T Consensus       175 L~~L~l~~n~l~-~~~~l~~l~~L~~L~L~~N~l~~~~  211 (308)
T 1h6u_A          175 LTTLKADDNKIS-DISPLASLPNLIEVHLKNNQISDVS  211 (308)
T ss_dssp             CCEEECCSSCCC-CCGGGGGCTTCCEEECTTSCCCBCG
T ss_pred             CCEEECCCCccC-cChhhcCCCCCCEEEccCCccCccc
Confidence              6888888887 4555447778888888888766554

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=99.78  E-value=1.5e-18  Score=121.46  Aligned_cols=134  Identities=18%  Similarity=0.154  Sum_probs=102.9

Q ss_pred             CcceeccCCccc-cCCCcccCCCCCCcEEEcccCcccCcCCccccCCCCccEEeccCCcccCCCcHHHHHHHHHHHhhcC
Q 039561            2 LQQGLKIQHKFS-RSFPTSTGALSSLESLHLHRNHLSGAIPLSLQNGTHFEVLDLRENAFIRDVPKWIKKSLLALFMMKG   80 (190)
Q Consensus         2 L~~L~l~~n~l~-~~~p~~l~~l~~L~~l~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~~~~~l~~~~~   80 (190)
                      |++|++++|.++ +.+|..+..+++|++|++++|.+++ + ..+..+++|++|++++|.+.+.+|..+..          
T Consensus        26 L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~-~-~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~----------   93 (168)
T 2ell_A           26 VRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLIS-V-SNLPKLPKLKKLELSENRIFGGLDMLAEK----------   93 (168)
T ss_dssp             CSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCC-C-SSCCCCSSCCEEEEESCCCCSCCCHHHHH----------
T ss_pred             CCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCC-h-hhhccCCCCCEEECcCCcCchHHHHHHhh----------
Confidence            678888888887 5678777888889999999998884 3 66778888999999998887767777666          


Q ss_pred             CcccccCCCCCCcEEEccCCeecccC-CccCCCCCCCcEEEcccCcceeccC---ccccCCCCCCEEeCCCCceEEeecc
Q 039561           81 KAFEYSTNLNVLRVIELSKNNFLGEI-AKGVTNPGASQTLNLSQNSFSRTIP---ESIGSMKSLESIDFSANHYLNLSNN  156 (190)
Q Consensus        81 ~~~~~~~~~~~L~~L~l~~n~l~~~~-p~~~~~l~~L~~L~l~~n~l~~~~p---~~l~~l~~L~~l~l~~N~~l~l~~N  156 (190)
                              +++|++|++++|.+.+.. +..+..+++|+.|++++|.+++..+   ..+..+++|+.|+        +++|
T Consensus        94 --------l~~L~~L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~--------l~~n  157 (168)
T 2ell_A           94 --------LPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLD--------GYDR  157 (168)
T ss_dssp             --------CTTCCEEECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEET--------TEET
T ss_pred             --------CCCCCEEeccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEec--------CCCC
Confidence                    888899999988887431 2677888889999999888884433   3677888888555        6666


Q ss_pred             cccccCCc
Q 039561          157 NLTGEIPS  164 (190)
Q Consensus       157 ~l~g~~p~  164 (190)
                      .+. ++|+
T Consensus       158 ~~~-~~~~  164 (168)
T 2ell_A          158 EDQ-EAPD  164 (168)
T ss_dssp             TSC-BCCS
T ss_pred             Chh-hccc
Confidence            665 4554

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=99.78  E-value=2.7e-19  Score=146.42  Aligned_cols=182  Identities=18%  Similarity=0.157  Sum_probs=140.6

Q ss_pred             CCcceeccCCccccCCCcccCCCCCCcEEEcccCcccCcCCccccCCCCccEEeccCCcccC-CCcHHHHHHHHHHHhh-
Q 039561            1 MLQQGLKIQHKFSRSFPTSTGALSSLESLHLHRNHLSGAIPLSLQNGTHFEVLDLRENAFIR-DVPKWIKKSLLALFMM-   78 (190)
Q Consensus         1 ~L~~L~l~~n~l~~~~p~~l~~l~~L~~l~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~-~~p~~~~~~~~~l~~~-   78 (190)
                      .|++|++++|.+++..|..++.+++|++|++++|.+++..+..+..+++|++|++++|.+.+ ..|..+. .+++|..+ 
T Consensus        51 ~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~-~l~~L~~L~  129 (549)
T 2z81_A           51 NLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFP-NLTNLQTLR  129 (549)
T ss_dssp             TCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCSCCHHHHTTCTTCCEEECTTCCCSSSCSSCSCT-TCTTCCEEE
T ss_pred             cccEEECCCCCcCccChhhccccccCCEEECCCCccCccCHHHhccCCCCcEEECCCCcccccchhhhhh-ccCCccEEE
Confidence            37899999999999777889999999999999999996666668999999999999999875 2344443 25555333 


Q ss_pred             ------cCCcc-cccCCCCCCcEEEccCCeecccCCccCCCCCCCcEEEcccCcceeccCcc-ccCCCCCCEEeCCCCc-
Q 039561           79 ------KGKAF-EYSTNLNVLRVIELSKNNFLGEIAKGVTNPGASQTLNLSQNSFSRTIPES-IGSMKSLESIDFSANH-  149 (190)
Q Consensus        79 ------~~~~~-~~~~~~~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~-l~~l~~L~~l~l~~N~-  149 (190)
                            .+.++ ..+..+++|++|++++|.+.+..|..++.+++|+.|+++.|.+. .+|.. +..+++|+.+++++|. 
T Consensus       130 L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~-~~~~~~~~~l~~L~~L~L~~n~l  208 (549)
T 2z81_A          130 IGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESA-FLLEIFADILSSVRYLELRDTNL  208 (549)
T ss_dssp             EEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSBST-THHHHHHHSTTTBSEEEEESCBC
T ss_pred             CCCCccccccCHhhhhcccccCeeeccCCcccccChhhhhccccCceEecccCccc-ccchhhHhhcccccEEEccCCcc
Confidence                  12233 46888999999999999999889999999999999999999987 55554 3568899988877764 


Q ss_pred             ------------------eEEeecccccccCCccc-----cccccccccccCCcccCC
Q 039561          150 ------------------YLNLSNNNLTGEIPSGI-----QLQGFHQSRFAGSELCGA  184 (190)
Q Consensus       150 ------------------~l~l~~N~l~g~~p~~~-----~~~~l~~~~~~~n~l~~~  184 (190)
                                        .+++++|.+++..+..+     .+.+++.+.+.+|.+.+.
T Consensus       209 ~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~L~~l~l~~~~~~~~  266 (549)
T 2z81_A          209 ARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDCTLNGL  266 (549)
T ss_dssp             TTCCCCCCSSCCCCCCCCEEEEESCEEEHHHHHHHHGGGGGCTTCCEEEEESCEEECC
T ss_pred             ccccccccchhhhhhcccceeccccccchhHHHHHHHHhhhhcccccccccccccccc
Confidence                              56777777765544332     356777778888865553

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=99.78  E-value=5.2e-19  Score=138.21  Aligned_cols=128  Identities=27%  Similarity=0.228  Sum_probs=76.0

Q ss_pred             CcceeccCCccccCCCcccC-CCCCCcEEEcccCcccCcCCccccCCCCccEEeccCCcccCCCcHHHHHHHHHHHhhcC
Q 039561            2 LQQGLKIQHKFSRSFPTSTG-ALSSLESLHLHRNHLSGAIPLSLQNGTHFEVLDLRENAFIRDVPKWIKKSLLALFMMKG   80 (190)
Q Consensus         2 L~~L~l~~n~l~~~~p~~l~-~l~~L~~l~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~~~~~l~~~~~   80 (190)
                      ++.|++++|.+++..+..+. .+++|++|++++|.++...+..|..+++|++|++++|.+....+..+.           
T Consensus        41 l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~-----------  109 (361)
T 2xot_A           41 TALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNHLHTLDEFLFS-----------  109 (361)
T ss_dssp             CSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTT-----------
T ss_pred             CCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCCCcCCcCCHHHhC-----------
Confidence            45566666666664444454 666666666666666644445566666666666666665443332232           


Q ss_pred             CcccccCCCCCCcEEEccCCeecccCCccCCCCCCCcEEEcccCcceeccCc-cc---cCCCCCCEEeCCCC
Q 039561           81 KAFEYSTNLNVLRVIELSKNNFLGEIAKGVTNPGASQTLNLSQNSFSRTIPE-SI---GSMKSLESIDFSAN  148 (190)
Q Consensus        81 ~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~-~l---~~l~~L~~l~l~~N  148 (190)
                             .+++|++|++++|.+.+..|..+..+++|+.|++++|.+++ +|. .+   ..+++|+.|++++|
T Consensus       110 -------~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~-l~~~~~~~~~~l~~L~~L~L~~N  173 (361)
T 2xot_A          110 -------DLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISR-FPVELIKDGNKLPKLMLLDLSSN  173 (361)
T ss_dssp             -------TCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCS-CCGGGTC----CTTCCEEECCSS
T ss_pred             -------CCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCe-eCHHHhcCcccCCcCCEEECCCC
Confidence                   36667777777777765556666677777777777777763 333 33   34566665554444

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=99.78  E-value=9.7e-19  Score=120.08  Aligned_cols=125  Identities=14%  Similarity=0.101  Sum_probs=106.7

Q ss_pred             CcceeccCCccc-cCCCcccCCCCCCcEEEcccCcccCcCCccccCCCCccEEeccCCcccCCCcHHHHHHHHHHHhhcC
Q 039561            2 LQQGLKIQHKFS-RSFPTSTGALSSLESLHLHRNHLSGAIPLSLQNGTHFEVLDLRENAFIRDVPKWIKKSLLALFMMKG   80 (190)
Q Consensus         2 L~~L~l~~n~l~-~~~p~~l~~l~~L~~l~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~~~~~l~~~~~   80 (190)
                      |++|++++|.++ +.+|..+..+++|++|++++|.+++.  ..+..+++|++|++++|.+.+.+|..+..          
T Consensus        19 l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~----------   86 (149)
T 2je0_A           19 VKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEK----------   86 (149)
T ss_dssp             CSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHH----------
T ss_pred             CeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhhh----------
Confidence            688999999998 66888889999999999999999844  67888999999999999988777777766          


Q ss_pred             CcccccCCCCCCcEEEccCCeeccc-CCccCCCCCCCcEEEcccCcceeccC---ccccCCCCCCEEeCC
Q 039561           81 KAFEYSTNLNVLRVIELSKNNFLGE-IAKGVTNPGASQTLNLSQNSFSRTIP---ESIGSMKSLESIDFS  146 (190)
Q Consensus        81 ~~~~~~~~~~~L~~L~l~~n~l~~~-~p~~~~~l~~L~~L~l~~n~l~~~~p---~~l~~l~~L~~l~l~  146 (190)
                              +++|++|++++|.+++. .+..++.+++|++|++++|.+++..+   ..+..+++|+.++++
T Consensus        87 --------l~~L~~L~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~  148 (149)
T 2je0_A           87 --------CPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGY  148 (149)
T ss_dssp             --------CTTCCEEECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTB
T ss_pred             --------CCCCCEEECCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCC
Confidence                    89999999999999853 34778899999999999999985544   468889999988875

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=99.78  E-value=1.7e-18  Score=131.55  Aligned_cols=155  Identities=21%  Similarity=0.315  Sum_probs=109.9

Q ss_pred             CcceeccCCccccCCCcccCCCCCCcEEEcccCcccCcCCccccCCCCccEEeccCCcccCCCcHHHHHHHHHHHhhcCC
Q 039561            2 LQQGLKIQHKFSRSFPTSTGALSSLESLHLHRNHLSGAIPLSLQNGTHFEVLDLRENAFIRDVPKWIKKSLLALFMMKGK   81 (190)
Q Consensus         2 L~~L~l~~n~l~~~~p~~l~~l~~L~~l~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~~~~~l~~~~~~   81 (190)
                      |++|++++|.++. ++ .+..+++|++|++++|.+++ ++. +..+++|++|++++|.+.+ ++. +.            
T Consensus        48 L~~L~l~~~~i~~-~~-~~~~l~~L~~L~L~~n~l~~-~~~-l~~l~~L~~L~l~~n~l~~-~~~-l~------------  109 (291)
T 1h6t_A           48 IDQIIANNSDIKS-VQ-GIQYLPNVTKLFLNGNKLTD-IKP-LANLKNLGWLFLDENKVKD-LSS-LK------------  109 (291)
T ss_dssp             CCEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCCC-CGG-GTTCTTCCEEECCSSCCCC-GGG-GT------------
T ss_pred             ccEEEccCCCccc-Ch-hHhcCCCCCEEEccCCccCC-Ccc-cccCCCCCEEECCCCcCCC-Chh-hc------------
Confidence            6788888888876 44 57888899999999999884 443 7788899999999988754 222 33            


Q ss_pred             cccccCCCCCCcEEEccCCeecccCCccCCCCCCCcEEEcccCcceeccCccccCCCCCCEEeCCCCc------------
Q 039561           82 AFEYSTNLNVLRVIELSKNNFLGEIAKGVTNPGASQTLNLSQNSFSRTIPESIGSMKSLESIDFSANH------------  149 (190)
Q Consensus        82 ~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~l~l~~N~------------  149 (190)
                            .+++|++|++++|.+.+ + +.+..+++|+.|++++|.+++.  ..+..+++|+.|++++|.            
T Consensus       110 ------~l~~L~~L~L~~n~i~~-~-~~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~N~l~~~~~l~~l~~  179 (291)
T 1h6t_A          110 ------DLKKLKSLSLEHNGISD-I-NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVPLAGLTK  179 (291)
T ss_dssp             ------TCTTCCEEECTTSCCCC-C-GGGGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGGGTTCTT
T ss_pred             ------cCCCCCEEECCCCcCCC-C-hhhcCCCCCCEEEccCCcCCcc--hhhccCCCCCEEEccCCccccchhhcCCCc
Confidence                  26677777777777663 3 3466667777777777777633  456667777777777765            


Q ss_pred             --eEEeecccccccCCccccccccccccccCCcccCCC
Q 039561          150 --YLNLSNNNLTGEIPSGIQLQGFHQSRFAGSELCGAP  185 (190)
Q Consensus       150 --~l~l~~N~l~g~~p~~~~~~~l~~~~~~~n~l~~~~  185 (190)
                        +|++++|.++ .+|+...+.+++.+.+++|.++..|
T Consensus       180 L~~L~L~~N~i~-~l~~l~~l~~L~~L~l~~n~i~~~~  216 (291)
T 1h6t_A          180 LQNLYLSKNHIS-DLRALAGLKNLDVLELFSQECLNKP  216 (291)
T ss_dssp             CCEEECCSSCCC-BCGGGTTCTTCSEEEEEEEEEECCC
T ss_pred             cCEEECCCCcCC-CChhhccCCCCCEEECcCCcccCCc
Confidence              6777888887 4565447777888888888666544

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=99.78  E-value=6.1e-18  Score=122.29  Aligned_cols=126  Identities=16%  Similarity=0.097  Sum_probs=100.8

Q ss_pred             cceeccCCccccCCCcccCCCCCCcEEEcccCcccCcCCccccCCCCccEEeccCCcccCCCcHHHHHHHHHHHhhcCCc
Q 039561            3 QQGLKIQHKFSRSFPTSTGALSSLESLHLHRNHLSGAIPLSLQNGTHFEVLDLRENAFIRDVPKWIKKSLLALFMMKGKA   82 (190)
Q Consensus         3 ~~L~l~~n~l~~~~p~~l~~l~~L~~l~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~~~~~l~~~~~~~   82 (190)
                      +.++.+++.++. +|..+  .+++++|++++|.+++..+..+..+++|++|++++|.+.+..+..+.             
T Consensus        10 ~~v~c~~~~l~~-~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~-------------   73 (208)
T 2o6s_A           10 TTVECYSQGRTS-VPTGI--PAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFN-------------   73 (208)
T ss_dssp             TEEECCSSCCSS-CCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTT-------------
T ss_pred             CEEEecCCCccC-CCCCC--CCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcC-------------
Confidence            356777777776 56544  46899999999999955556678899999999999998754333333             


Q ss_pred             ccccCCCCCCcEEEccCCeecccCCccCCCCCCCcEEEcccCcceeccCccccCCCCCCEEeCCCCc
Q 039561           83 FEYSTNLNVLRVIELSKNNFLGEIAKGVTNPGASQTLNLSQNSFSRTIPESIGSMKSLESIDFSANH  149 (190)
Q Consensus        83 ~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~l~l~~N~  149 (190)
                           .+++|++|++++|.+++..+..+..+++|++|++++|.+++..+..+..+++|+.|++++|.
T Consensus        74 -----~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~  135 (208)
T 2o6s_A           74 -----KLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQ  135 (208)
T ss_dssp             -----TCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred             -----CCCCcCEEECCCCcCCccCHhHhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCc
Confidence                 38999999999999986555668899999999999999996666678899999987766664

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=99.77  E-value=2e-18  Score=142.96  Aligned_cols=158  Identities=18%  Similarity=0.157  Sum_probs=120.5

Q ss_pred             eccCCccccCCCcccCCCCCCcEEEcccCcccCcCCccccCCCCccEEeccCCcccCCCcHHHHHHHHHHHhhcCCcccc
Q 039561            6 LKIQHKFSRSFPTSTGALSSLESLHLHRNHLSGAIPLSLQNGTHFEVLDLRENAFIRDVPKWIKKSLLALFMMKGKAFEY   85 (190)
Q Consensus         6 ~l~~n~l~~~~p~~l~~l~~L~~l~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~~~~~l~~~~~~~~~~   85 (190)
                      +-++.+++. +|+.+.  +++++|++++|.++...+..|..+++|++|++++|.+.+..+..+.                
T Consensus        37 ~c~~~~l~~-vP~~lp--~~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~----------------   97 (635)
T 4g8a_A           37 QCMELNFYK-IPDNLP--FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQ----------------   97 (635)
T ss_dssp             ECTTSCCSS-CCSSSC--TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTT----------------
T ss_pred             ECCCCCcCc-cCCCCC--cCCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCCCcChhHhc----------------
Confidence            334445654 676553  5799999999999965567899999999999999998754444444                


Q ss_pred             cCCCCCCcEEEccCCeecccCCccCCCCCCCcEEEcccCcceeccCccccCCCCCCEEeCCCCc----------------
Q 039561           86 STNLNVLRVIELSKNNFLGEIAKGVTNPGASQTLNLSQNSFSRTIPESIGSMKSLESIDFSANH----------------  149 (190)
Q Consensus        86 ~~~~~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~l~l~~N~----------------  149 (190)
                        ++++|++|+|++|++.+..+.+|.++++|++|++++|.+++..+..|+.+++|+.|++++|.                
T Consensus        98 --~L~~L~~L~Ls~N~l~~l~~~~f~~L~~L~~L~Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L  175 (635)
T 4g8a_A           98 --SLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNL  175 (635)
T ss_dssp             --TCTTCCEEECTTCCCCEECGGGGTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTC
T ss_pred             --CCCCCCEEEccCCcCCCCCHHHhcCCCCCCEEECCCCcCCCCChhhhhcCcccCeeccccCccccCCCchhhccchhh
Confidence              49999999999999986656789999999999999999996666679999999999988886                


Q ss_pred             -eEEeecccccccCCccc-cccccc----cccccCCcccCC
Q 039561          150 -YLNLSNNNLTGEIPSGI-QLQGFH----QSRFAGSELCGA  184 (190)
Q Consensus       150 -~l~l~~N~l~g~~p~~~-~~~~l~----~~~~~~n~l~~~  184 (190)
                       +|++++|.+++..|..+ .+.++.    ...++.|.+...
T Consensus       176 ~~L~L~~N~l~~~~~~~l~~L~~l~~~~~~~~ls~n~l~~i  216 (635)
T 4g8a_A          176 EHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFI  216 (635)
T ss_dssp             CEEECCSSCCCEECGGGGHHHHTCTTCCCEEECTTCCCCEE
T ss_pred             hhhcccCccccccccccccchhhhhhhhhhhhcccCccccc
Confidence             68888888876656554 333332    234555544433

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=99.77  E-value=4.3e-18  Score=146.03  Aligned_cols=183  Identities=15%  Similarity=0.154  Sum_probs=113.3

Q ss_pred             CcceeccCCccccCCCcc--cCCCCCCcEEEcccCcccCcCC-ccccCCCCccEEeccCCcccCCCcHHHHHHH--HHHH
Q 039561            2 LQQGLKIQHKFSRSFPTS--TGALSSLESLHLHRNHLSGAIP-LSLQNGTHFEVLDLRENAFIRDVPKWIKKSL--LALF   76 (190)
Q Consensus         2 L~~L~l~~n~l~~~~p~~--l~~l~~L~~l~l~~n~~~~~~~-~~~~~l~~L~~L~l~~n~~~~~~p~~~~~~~--~~l~   76 (190)
                      |++|++++|.+++.+|..  +.++++|++|++++|.+++..+ ..|..+++|++|++++|.+.+..+..+.. +  +.|.
T Consensus        99 L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~-l~~~~L~  177 (844)
T 3j0a_A           99 LFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEP-LQGKTLS  177 (844)
T ss_dssp             CCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCSGGGHH-HHHCSSC
T ss_pred             cCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCeeCHHHccc-ccCCccc
Confidence            556666666666544443  6666666666666666664333 45666777777777777766655655442 2  1111


Q ss_pred             hh-------cCCcccccCC-------------------------------------------------------------
Q 039561           77 MM-------KGKAFEYSTN-------------------------------------------------------------   88 (190)
Q Consensus        77 ~~-------~~~~~~~~~~-------------------------------------------------------------   88 (190)
                      .+       .+..+..++.                                                             
T Consensus       178 ~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~~~~~~l~~~~~  257 (844)
T 3j0a_A          178 FFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQ  257 (844)
T ss_dssp             CCEECCSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBCSSSCSSSTTGGG
T ss_pred             eEECCCCccccccccchhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCcccccceecccccccccccccccCCCCh
Confidence            10       0111111111                                                             


Q ss_pred             -------CCCCcEEEccCCeecccCCccCCCCCCCcEEEcccCcceeccCccccCCCCCCEEeCCCCc------------
Q 039561           89 -------LNVLRVIELSKNNFLGEIAKGVTNPGASQTLNLSQNSFSRTIPESIGSMKSLESIDFSANH------------  149 (190)
Q Consensus        89 -------~~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~l~l~~N~------------  149 (190)
                             .++++.|++++|.+.+..+..+..++.|+.|++++|.+++..|..+..+++|+.|++++|.            
T Consensus       258 ~~f~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l  337 (844)
T 3j0a_A          258 NTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGL  337 (844)
T ss_dssp             TTTTTTTTSCCCEEECTTCCCCEECSCCSSSCCCCCEEEEESCCCCEECTTTTTTCSSCCEEEEESCCCSCCCSCSCSSC
T ss_pred             hhhhccccCCccEEECCCCcccccChhhhhcCCCCCEEECCCCcCCCCChHHhcCCCCCCEEECCCCCCCccCHHHhcCC
Confidence                   1456777777777766666677777778888888887776667777777778877777775            


Q ss_pred             ----eEEeecccccccCCccc-cccccccccccCCcccCCC
Q 039561          150 ----YLNLSNNNLTGEIPSGI-QLQGFHQSRFAGSELCGAP  185 (190)
Q Consensus       150 ----~l~l~~N~l~g~~p~~~-~~~~l~~~~~~~n~l~~~~  185 (190)
                          +|++++|.+++..|..+ .+.+++.+.+++|.+.+.+
T Consensus       338 ~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~i~  378 (844)
T 3j0a_A          338 PKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALTTIH  378 (844)
T ss_dssp             TTCCEEECCSCCCCCCCSSCSCSCCCCCEEEEETCCSCCCS
T ss_pred             CCCCEEECCCCCCCccChhhhcCCCCCCEEECCCCCCCccc
Confidence                67777777774444444 5777777777777666543

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=99.77  E-value=1.4e-18  Score=142.83  Aligned_cols=101  Identities=25%  Similarity=0.357  Sum_probs=80.1

Q ss_pred             ccCCCCCCcEEEccCCeecc--cCCccCCCCCCCcEEEcccCcceeccCc-cccCCCCCCEEeCCCCc------------
Q 039561           85 YSTNLNVLRVIELSKNNFLG--EIAKGVTNPGASQTLNLSQNSFSRTIPE-SIGSMKSLESIDFSANH------------  149 (190)
Q Consensus        85 ~~~~~~~L~~L~l~~n~l~~--~~p~~~~~l~~L~~L~l~~n~l~~~~p~-~l~~l~~L~~l~l~~N~------------  149 (190)
                      .++.+++|++|++++|++++  .+|..++.+++|+.|++++|.+++.+|. .+..+++|+.+++++|.            
T Consensus       372 ~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~~  451 (562)
T 3a79_B          372 GCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSVFRCLPPK  451 (562)
T ss_dssp             TCCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSCCBSCCSSCCCCCCTTCCEEECCSSCCCGGGGSSCCTT
T ss_pred             hhcccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCCcCCCccChhhhcCcccCCEEECCCCCCCcchhhhhcCc
Confidence            44458888888888888875  3345678888888888888888864554 47778888999988886            


Q ss_pred             --eEEeecccccccCCccc-cccccccccccCCcccCCCC
Q 039561          150 --YLNLSNNNLTGEIPSGI-QLQGFHQSRFAGSELCGAPF  186 (190)
Q Consensus       150 --~l~l~~N~l~g~~p~~~-~~~~l~~~~~~~n~l~~~~~  186 (190)
                        +|++++|.++ .+|+.+ .+.+++.+++++|.+...|.
T Consensus       452 L~~L~L~~N~l~-~ip~~~~~l~~L~~L~L~~N~l~~l~~  490 (562)
T 3a79_B          452 VKVLDLHNNRIM-SIPKDVTHLQALQELNVASNQLKSVPD  490 (562)
T ss_dssp             CSEEECCSSCCC-CCCTTTTSSCCCSEEECCSSCCCCCCT
T ss_pred             CCEEECCCCcCc-ccChhhcCCCCCCEEECCCCCCCCCCH
Confidence              7899999998 788766 78889999999998887764

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=99.76  E-value=1.1e-18  Score=128.84  Aligned_cols=156  Identities=15%  Similarity=0.194  Sum_probs=101.2

Q ss_pred             CCcceeccCCc-cccCCCcccCCCCCCcEEEccc-CcccCcCCccccCCCCccEEeccCCcccCCCcHHHHHHHHHHHhh
Q 039561            1 MLQQGLKIQHK-FSRSFPTSTGALSSLESLHLHR-NHLSGAIPLSLQNGTHFEVLDLRENAFIRDVPKWIKKSLLALFMM   78 (190)
Q Consensus         1 ~L~~L~l~~n~-l~~~~p~~l~~l~~L~~l~l~~-n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~~~~~l~~~   78 (190)
                      .|++|++++|. ++...+..+..+++|++|++++ |.++...+..|..+++|++|++++|.+.+ +|. +..        
T Consensus        56 ~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L~l~~n~l~~-lp~-~~~--------  125 (239)
T 2xwt_C           56 NISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLGIFNTGLKM-FPD-LTK--------  125 (239)
T ss_dssp             TCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEEEEEEECCCS-CCC-CTT--------
T ss_pred             CCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEEeCCCCCCcc-ccc-ccc--------
Confidence            37889999997 8875556788999999999998 99985555678889999999999999765 554 322        


Q ss_pred             cCCcccccCCCCCCc---EEEccCC-eecccCCccCCCCCCCc-EEEcccCcceeccCccccCCCCCCEEeCCCC-c---
Q 039561           79 KGKAFEYSTNLNVLR---VIELSKN-NFLGEIAKGVTNPGASQ-TLNLSQNSFSRTIPESIGSMKSLESIDFSAN-H---  149 (190)
Q Consensus        79 ~~~~~~~~~~~~~L~---~L~l~~n-~l~~~~p~~~~~l~~L~-~L~l~~n~l~~~~p~~l~~l~~L~~l~l~~N-~---  149 (190)
                                +++++   +|++++| .+.+..+..+..+++|+ .|++++|.++ .+|......++|+.+++++| .   
T Consensus       126 ----------l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~-~i~~~~~~~~~L~~L~L~~n~~l~~  194 (239)
T 2xwt_C          126 ----------VYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFT-SVQGYAFNGTKLDAVYLNKNKYLTV  194 (239)
T ss_dssp             ----------CCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCC-EECTTTTTTCEEEEEECTTCTTCCE
T ss_pred             ----------ccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCc-ccCHhhcCCCCCCEEEcCCCCCccc
Confidence                      33333   4455544 44433233344444454 5555544444 33322222244444444444 1   


Q ss_pred             --------------eEEeecccccccCCccccccccccccccCC
Q 039561          150 --------------YLNLSNNNLTGEIPSGIQLQGFHQSRFAGS  179 (190)
Q Consensus       150 --------------~l~l~~N~l~g~~p~~~~~~~l~~~~~~~n  179 (190)
                                    ++++++|.++ .+|.. .+..++.+.+.++
T Consensus       195 i~~~~~~~l~~~L~~L~l~~N~l~-~l~~~-~~~~L~~L~l~~~  236 (239)
T 2xwt_C          195 IDKDAFGGVYSGPSLLDVSQTSVT-ALPSK-GLEHLKELIARNT  236 (239)
T ss_dssp             ECTTTTTTCSBCCSEEECTTCCCC-CCCCT-TCTTCSEEECTTC
T ss_pred             CCHHHhhccccCCcEEECCCCccc-cCChh-HhccCceeeccCc
Confidence                          5678889998 66765 6788888887776

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=99.76  E-value=1.1e-18  Score=135.72  Aligned_cols=175  Identities=14%  Similarity=0.130  Sum_probs=103.7

Q ss_pred             eeccCCccccCCCcccCCCCCCcEEEcccCcccCcCCccccCCCCccEEeccCCcccCCCcHHHHHHHHHHHhhc--C--
Q 039561            5 GLKIQHKFSRSFPTSTGALSSLESLHLHRNHLSGAIPLSLQNGTHFEVLDLRENAFIRDVPKWIKKSLLALFMMK--G--   80 (190)
Q Consensus         5 L~l~~n~l~~~~p~~l~~l~~L~~l~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~~~~~l~~~~--~--   80 (190)
                      .+.+++.++. +|..+.  ++|++|++++|.+++..+..+..+++|++|++++|.+.+..|..+.. +++|..+.  .  
T Consensus        36 c~~~~~~l~~-iP~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~-l~~L~~L~Ls~n~  111 (353)
T 2z80_A           36 CKGSSGSLNS-IPSGLT--EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSS-LGSLEHLDLSYNY  111 (353)
T ss_dssp             EECCSTTCSS-CCTTCC--TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTT-CTTCCEEECCSSC
T ss_pred             eeCCCCCccc-cccccc--ccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCC-CCCCCEEECCCCc
Confidence            4667777776 676554  58999999999999555557899999999999999987765555543 33332221  0  


Q ss_pred             --Ccc-cccCCCCCCcEEEccCCeecccCCc--cCCCCCCCcEEEcccC-cceeccCccccCCCCCCEEeCCCCc-----
Q 039561           81 --KAF-EYSTNLNVLRVIELSKNNFLGEIAK--GVTNPGASQTLNLSQN-SFSRTIPESIGSMKSLESIDFSANH-----  149 (190)
Q Consensus        81 --~~~-~~~~~~~~L~~L~l~~n~l~~~~p~--~~~~l~~L~~L~l~~n-~l~~~~p~~l~~l~~L~~l~l~~N~-----  149 (190)
                        .++ ..+..+++|++|++++|.+. .+|.  .+..+++|++|++++| .+++..+..+..+++|+.+++++|.     
T Consensus       112 l~~~~~~~~~~l~~L~~L~L~~n~l~-~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~  190 (353)
T 2z80_A          112 LSNLSSSWFKPLSSLTFLNLLGNPYK-TLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYE  190 (353)
T ss_dssp             CSSCCHHHHTTCTTCSEEECTTCCCS-SSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEEC
T ss_pred             CCcCCHhHhCCCccCCEEECCCCCCc-ccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCCcCccC
Confidence              111 12444555555555555554 2332  4555555555555555 2443334455555555555555553     


Q ss_pred             -----------eEEeecccccccCCccc--cccccccccccCCcccCCC
Q 039561          150 -----------YLNLSNNNLTGEIPSGI--QLQGFHQSRFAGSELCGAP  185 (190)
Q Consensus       150 -----------~l~l~~N~l~g~~p~~~--~~~~l~~~~~~~n~l~~~~  185 (190)
                                 ++++++|.+. .+|..+  .+.+++.+++++|.+.+.+
T Consensus       191 ~~~l~~l~~L~~L~l~~n~l~-~~~~~~~~~~~~L~~L~L~~n~l~~~~  238 (353)
T 2z80_A          191 PKSLKSIQNVSHLILHMKQHI-LLLEIFVDVTSSVECLELRDTDLDTFH  238 (353)
T ss_dssp             TTTTTTCSEEEEEEEECSCST-THHHHHHHHTTTEEEEEEESCBCTTCC
T ss_pred             HHHHhccccCCeecCCCCccc-cchhhhhhhcccccEEECCCCcccccc
Confidence                       4555555554 333332  3556666666666665544

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.76  E-value=8e-19  Score=142.21  Aligned_cols=170  Identities=17%  Similarity=0.153  Sum_probs=120.7

Q ss_pred             CCcceeccCCccccCCCcccCCCCCCcEEEcccCcccCcCCccccCCCCccEEeccCCcccCCCcHHHHHHHHHH----H
Q 039561            1 MLQQGLKIQHKFSRSFPTSTGALSSLESLHLHRNHLSGAIPLSLQNGTHFEVLDLRENAFIRDVPKWIKKSLLAL----F   76 (190)
Q Consensus         1 ~L~~L~l~~n~l~~~~p~~l~~l~~L~~l~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~~~~~l----~   76 (190)
                      .|++|++++|.+++..|  +..+++|++|++++|.++ .+|.    .++|++|++++|.+.+..+..+. .++.|    .
T Consensus        59 ~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~-~l~~----~~~L~~L~L~~N~l~~~~~~~l~-~L~~L~L~~N  130 (487)
T 3oja_A           59 KLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQ-ELLV----GPSIETLHAANNNISRVSCSRGQ-GKKNIYLANN  130 (487)
T ss_dssp             TCCEEECTTSCCEEEEE--CTTCTTCCEEECCSSEEE-EEEE----CTTCCEEECCSSCCCCEEECCCS-SCEEEECCSS
T ss_pred             CCCEEEeeCCCCCCCcc--cccCCCCCEEEecCCcCC-CCCC----CCCcCEEECcCCcCCCCCccccC-CCCEEECCCC
Confidence            37889999999987554  888999999999999888 3332    25666666666665543332211 11111    0


Q ss_pred             hhcCCcccccCCCCCCcEEEccCCeecccCCccCC-CCCCCcEEEcccCcceeccCccccCCCCCCEEeCCCCc------
Q 039561           77 MMKGKAFEYSTNLNVLRVIELSKNNFLGEIAKGVT-NPGASQTLNLSQNSFSRTIPESIGSMKSLESIDFSANH------  149 (190)
Q Consensus        77 ~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~-~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~l~l~~N~------  149 (190)
                      .+.+..+..++.+++|+.|++++|.+++..|..+. .++.|+.|++++|.+++. |. ...+++|+.|++++|.      
T Consensus       131 ~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~~~-~~-~~~l~~L~~L~Ls~N~l~~~~~  208 (487)
T 3oja_A          131 KITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDV-KG-QVVFAKLKTLDLSSNKLAFMGP  208 (487)
T ss_dssp             CCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEE-EC-CCCCTTCCEEECCSSCCCEECG
T ss_pred             CCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCccccc-cc-cccCCCCCEEECCCCCCCCCCH
Confidence            11222244556688899999999998877777775 688899999999988855 32 3458889999999887      


Q ss_pred             ---------eEEeecccccccCCccc-cccccccccccCCcc
Q 039561          150 ---------YLNLSNNNLTGEIPSGI-QLQGFHQSRFAGSEL  181 (190)
Q Consensus       150 ---------~l~l~~N~l~g~~p~~~-~~~~l~~~~~~~n~l  181 (190)
                               +|++++|.+++ +|..+ .+.++..+++++|.+
T Consensus       209 ~~~~l~~L~~L~Ls~N~l~~-lp~~l~~l~~L~~L~l~~N~l  249 (487)
T 3oja_A          209 EFQSAAGVTWISLRNNKLVL-IEKALRFSQNLEHFDLRGNGF  249 (487)
T ss_dssp             GGGGGTTCSEEECTTSCCCE-ECTTCCCCTTCCEEECTTCCB
T ss_pred             hHcCCCCccEEEecCCcCcc-cchhhccCCCCCEEEcCCCCC
Confidence                     78999999984 67666 678899999999943

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=99.76  E-value=7.1e-18  Score=131.74  Aligned_cols=155  Identities=21%  Similarity=0.152  Sum_probs=122.4

Q ss_pred             cceeccCCccccCCCcccCCCCCCcEEEcccCcccCcCCcccc-CCCCccEEeccCCcccCCCcHHHHHHHHHHHhhcCC
Q 039561            3 QQGLKIQHKFSRSFPTSTGALSSLESLHLHRNHLSGAIPLSLQ-NGTHFEVLDLRENAFIRDVPKWIKKSLLALFMMKGK   81 (190)
Q Consensus         3 ~~L~l~~n~l~~~~p~~l~~l~~L~~l~l~~n~~~~~~~~~~~-~l~~L~~L~l~~n~~~~~~p~~~~~~~~~l~~~~~~   81 (190)
                      +++++++++++. +|..+.  +.+++|++++|.+++..+..+. .+++|++|++++|.+.+..+..+..           
T Consensus        21 ~~l~c~~~~l~~-iP~~~~--~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~-----------   86 (361)
T 2xot_A           21 NILSCSKQQLPN-VPQSLP--SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVP-----------   86 (361)
T ss_dssp             TEEECCSSCCSS-CCSSCC--TTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTT-----------
T ss_pred             CEEEeCCCCcCc-cCccCC--CCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccC-----------
Confidence            467888998887 776554  4689999999999965566666 8999999999999987655444444           


Q ss_pred             cccccCCCCCCcEEEccCCeecccCCccCCCCCCCcEEEcccCcceeccCccccCCCCCCEEeCCCCc------------
Q 039561           82 AFEYSTNLNVLRVIELSKNNFLGEIAKGVTNPGASQTLNLSQNSFSRTIPESIGSMKSLESIDFSANH------------  149 (190)
Q Consensus        82 ~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~l~l~~N~------------  149 (190)
                             +++|++|++++|++.+..+..+..+.+|+.|++++|.+++..|..|..+++|+.|++++|.            
T Consensus        87 -------l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~  159 (361)
T 2xot_A           87 -------VPNLRYLDLSSNHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDG  159 (361)
T ss_dssp             -------CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC--
T ss_pred             -------CCCCCEEECCCCcCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCc
Confidence                   8999999999999986666789999999999999999998778899999999998887775            


Q ss_pred             -------eEEeecccccccCCcc-c-cccc--cccccccCC
Q 039561          150 -------YLNLSNNNLTGEIPSG-I-QLQG--FHQSRFAGS  179 (190)
Q Consensus       150 -------~l~l~~N~l~g~~p~~-~-~~~~--l~~~~~~~n  179 (190)
                             +||+++|.|+ .+|.. + .+..  ++.+.+++|
T Consensus       160 ~~l~~L~~L~L~~N~l~-~l~~~~~~~l~~~~l~~l~l~~N  199 (361)
T 2xot_A          160 NKLPKLMLLDLSSNKLK-KLPLTDLQKLPAWVKNGLYLHNN  199 (361)
T ss_dssp             --CTTCCEEECCSSCCC-CCCHHHHHHSCHHHHTTEECCSS
T ss_pred             ccCCcCCEEECCCCCCC-ccCHHHhhhccHhhcceEEecCC
Confidence                   4777777777 44432 2 2333  355666666

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=99.76  E-value=3.3e-19  Score=136.91  Aligned_cols=137  Identities=16%  Similarity=0.115  Sum_probs=69.9

Q ss_pred             CCCCcEEEcccCcccCcCCccccCCCCccEEeccCCcccCCCcHHHHHHHHHHHhhcCCcccccCCCCCCcEEEccCCee
Q 039561           23 LSSLESLHLHRNHLSGAIPLSLQNGTHFEVLDLRENAFIRDVPKWIKKSLLALFMMKGKAFEYSTNLNVLRVIELSKNNF  102 (190)
Q Consensus        23 l~~L~~l~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~~~~~l~~~~~~~~~~~~~~~~L~~L~l~~n~l  102 (190)
                      +++|++|++++|.+++..+..+..+++|++|++++|.+.+..+..+.                 ..+++|++|++++|.+
T Consensus       119 ~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~-----------------~~l~~L~~L~L~~N~l  181 (317)
T 3o53_A          119 GQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELA-----------------ASSDTLEHLNLQYNFI  181 (317)
T ss_dssp             CSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEGGGGG-----------------GGTTTCCEEECTTSCC
T ss_pred             cCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcccHHHHh-----------------hccCcCCEEECCCCcC
Confidence            34455555555555543344444555555555555555443333221                 1255666666666666


Q ss_pred             cccCCccCCCCCCCcEEEcccCcceeccCccccCCCCCCEEeCCCCc---------------eEEeeccccc-ccCCccc
Q 039561          103 LGEIAKGVTNPGASQTLNLSQNSFSRTIPESIGSMKSLESIDFSANH---------------YLNLSNNNLT-GEIPSGI  166 (190)
Q Consensus       103 ~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~l~l~~N~---------------~l~l~~N~l~-g~~p~~~  166 (190)
                      ++. +. ...+++|+.|++++|.++ .+|..+..+++|+.|++++|.               ++++++|.+. +.+|..+
T Consensus       182 ~~~-~~-~~~l~~L~~L~Ls~N~l~-~l~~~~~~l~~L~~L~L~~N~l~~l~~~~~~l~~L~~L~l~~N~~~~~~~~~~~  258 (317)
T 3o53_A          182 YDV-KG-QVVFAKLKTLDLSSNKLA-FMGPEFQSAAGVTWISLRNNKLVLIEKALRFSQNLEHFDLRGNGFHCGTLRDFF  258 (317)
T ss_dssp             CEE-EC-CCCCTTCCEEECCSSCCC-EECGGGGGGTTCSEEECTTSCCCEECTTCCCCTTCCEEECTTCCCBHHHHHHHH
T ss_pred             ccc-cc-ccccccCCEEECCCCcCC-cchhhhcccCcccEEECcCCcccchhhHhhcCCCCCEEEccCCCccCcCHHHHH
Confidence            532 32 223566666666666665 334445556666655555554               4555555555 3444433


Q ss_pred             -cccccccccccCC
Q 039561          167 -QLQGFHQSRFAGS  179 (190)
Q Consensus       167 -~~~~l~~~~~~~n  179 (190)
                       .+..++.+.+.++
T Consensus       259 ~~~~~L~~l~l~~~  272 (317)
T 3o53_A          259 SKNQRVQTVAKQTV  272 (317)
T ss_dssp             HTCHHHHHHHHHHH
T ss_pred             hccccceEEECCCc
Confidence             4444555554433

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=99.75  E-value=2.3e-17  Score=132.70  Aligned_cols=169  Identities=17%  Similarity=0.181  Sum_probs=108.2

Q ss_pred             CcceeccCCccccCCCcccCCCCCCcEEEcccCcccCcCCccccCCCCccEEeccCCcccCCCcHHHHHHHHHHHhhc--
Q 039561            2 LQQGLKIQHKFSRSFPTSTGALSSLESLHLHRNHLSGAIPLSLQNGTHFEVLDLRENAFIRDVPKWIKKSLLALFMMK--   79 (190)
Q Consensus         2 L~~L~l~~n~l~~~~p~~l~~l~~L~~l~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~~~~~l~~~~--   79 (190)
                      |++|++++|.+++ +|  ++.+++|++|++++|.+++ ++  +..+++|++|++++|.+.+ +|  +. .+++|..+.  
T Consensus        66 L~~L~Ls~n~l~~-~~--~~~l~~L~~L~Ls~N~l~~-~~--~~~l~~L~~L~L~~N~l~~-l~--~~-~l~~L~~L~l~  135 (457)
T 3bz5_A           66 LTKLICTSNNITT-LD--LSQNTNLTYLACDSNKLTN-LD--VTPLTKLTYLNCDTNKLTK-LD--VS-QNPLLTYLNCA  135 (457)
T ss_dssp             CSEEECCSSCCSC-CC--CTTCTTCSEEECCSSCCSC-CC--CTTCTTCCEEECCSSCCSC-CC--CT-TCTTCCEEECT
T ss_pred             CCEEEccCCcCCe-Ec--cccCCCCCEEECcCCCCce-ee--cCCCCcCCEEECCCCcCCe-ec--CC-CCCcCCEEECC
Confidence            6778888888887 44  7778888888888888874 44  6677888888888887665 33  22 233332221  


Q ss_pred             C-Ccc-cccCCCCCCcEEEccCCeecccCCccCCCCCCCcEEEcccCcceeccCccccCCCCCCEEeCCCCc--------
Q 039561           80 G-KAF-EYSTNLNVLRVIELSKNNFLGEIAKGVTNPGASQTLNLSQNSFSRTIPESIGSMKSLESIDFSANH--------  149 (190)
Q Consensus        80 ~-~~~-~~~~~~~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~l~l~~N~--------  149 (190)
                      . .+. -.++.+++|++|++++|...+.+  .++.+++|+.|++++|.+++ +|  +..+++|+.+++++|.        
T Consensus       136 ~N~l~~l~l~~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~ls~n~l~~-l~--l~~l~~L~~L~l~~N~l~~~~l~~  210 (457)
T 3bz5_A          136 RNTLTEIDVSHNTQLTELDCHLNKKITKL--DVTPQTQLTTLDCSFNKITE-LD--VSQNKLLNRLNCDTNNITKLDLNQ  210 (457)
T ss_dssp             TSCCSCCCCTTCTTCCEEECTTCSCCCCC--CCTTCTTCCEEECCSSCCCC-CC--CTTCTTCCEEECCSSCCSCCCCTT
T ss_pred             CCccceeccccCCcCCEEECCCCCccccc--ccccCCcCCEEECCCCccce-ec--cccCCCCCEEECcCCcCCeecccc
Confidence            1 010 02445666666776666433333  35666777777777777764 44  6667777777777765        


Q ss_pred             -----eEEeecccccccCCccccccccccccccCCcccCCCCC
Q 039561          150 -----YLNLSNNNLTGEIPSGIQLQGFHQSRFAGSELCGAPFP  187 (190)
Q Consensus       150 -----~l~l~~N~l~g~~p~~~~~~~l~~~~~~~n~l~~~~~~  187 (190)
                           +|++++|.+++ +| ...+.+++.+.+++|.+.+.|.+
T Consensus       211 l~~L~~L~Ls~N~l~~-ip-~~~l~~L~~L~l~~N~l~~~~~~  251 (457)
T 3bz5_A          211 NIQLTFLDCSSNKLTE-ID-VTPLTQLTYFDCSVNPLTELDVS  251 (457)
T ss_dssp             CTTCSEEECCSSCCSC-CC-CTTCTTCSEEECCSSCCSCCCCT
T ss_pred             CCCCCEEECcCCcccc-cC-ccccCCCCEEEeeCCcCCCcCHH
Confidence                 67777777774 56 33667777777777777766643

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=99.75  E-value=2.2e-17  Score=132.81  Aligned_cols=116  Identities=17%  Similarity=0.223  Sum_probs=81.7

Q ss_pred             CCcceeccCCccccCCCcccCCCCCCcEEEcccCcccCcCCccccCCCCccEEeccCCcccCCCcHHHHHHHHHHHhhcC
Q 039561            1 MLQQGLKIQHKFSRSFPTSTGALSSLESLHLHRNHLSGAIPLSLQNGTHFEVLDLRENAFIRDVPKWIKKSLLALFMMKG   80 (190)
Q Consensus         1 ~L~~L~l~~n~l~~~~p~~l~~l~~L~~l~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~~~~~l~~~~~   80 (190)
                      .|++|++++|.+++ +| .++.+++|++|++++|.+++ +|  +..+++|++|++++|.+.+. +  +..          
T Consensus        43 ~L~~L~Ls~n~l~~-~~-~l~~l~~L~~L~Ls~n~l~~-~~--~~~l~~L~~L~Ls~N~l~~~-~--~~~----------  104 (457)
T 3bz5_A           43 TLTSLDCHNSSITD-MT-GIEKLTGLTKLICTSNNITT-LD--LSQNTNLTYLACDSNKLTNL-D--VTP----------  104 (457)
T ss_dssp             TCCEEECCSSCCCC-CT-TGGGCTTCSEEECCSSCCSC-CC--CTTCTTCSEEECCSSCCSCC-C--CTT----------
T ss_pred             CCCEEEccCCCccc-Ch-hhcccCCCCEEEccCCcCCe-Ec--cccCCCCCEEECcCCCCcee-e--cCC----------
Confidence            37899999999998 55 78999999999999999994 55  78899999999999998763 3  332          


Q ss_pred             CcccccCCCCCCcEEEccCCeecccCCccCCCCCCCcEEEcccCcceeccCccccCCCCCCEEeCCCC
Q 039561           81 KAFEYSTNLNVLRVIELSKNNFLGEIAKGVTNPGASQTLNLSQNSFSRTIPESIGSMKSLESIDFSAN  148 (190)
Q Consensus        81 ~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~l~l~~N  148 (190)
                              +++|++|++++|.+++ ++  ++.+++|++|++++|.+++ ++  ++.+++|+.+++++|
T Consensus       105 --------l~~L~~L~L~~N~l~~-l~--~~~l~~L~~L~l~~N~l~~-l~--l~~l~~L~~L~l~~n  158 (457)
T 3bz5_A          105 --------LTKLTYLNCDTNKLTK-LD--VSQNPLLTYLNCARNTLTE-ID--VSHNTQLTELDCHLN  158 (457)
T ss_dssp             --------CTTCCEEECCSSCCSC-CC--CTTCTTCCEEECTTSCCSC-CC--CTTCTTCCEEECTTC
T ss_pred             --------CCcCCEEECCCCcCCe-ec--CCCCCcCCEEECCCCccce-ec--cccCCcCCEEECCCC
Confidence                    5556666666666553 32  5555666666666666553 22  445555555555555

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=99.75  E-value=7.8e-18  Score=139.52  Aligned_cols=157  Identities=20%  Similarity=0.306  Sum_probs=111.9

Q ss_pred             CCcceeccCCccccCCCcccCCCCCCcEEEcccCcccCcCCccccCCCCccEEeccCCcccCCCcHHHHHHHHHHHhhcC
Q 039561            1 MLQQGLKIQHKFSRSFPTSTGALSSLESLHLHRNHLSGAIPLSLQNGTHFEVLDLRENAFIRDVPKWIKKSLLALFMMKG   80 (190)
Q Consensus         1 ~L~~L~l~~n~l~~~~p~~l~~l~~L~~l~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~~~~~l~~~~~   80 (190)
                      .|+.|++++|.+.. ++ .+..+++|+.|++++|.+++ ++. +..+++|+.|++++|.+.+ +| .+.           
T Consensus        44 ~L~~L~l~~n~i~~-l~-~l~~l~~L~~L~Ls~N~l~~-~~~-l~~l~~L~~L~Ls~N~l~~-l~-~l~-----------  106 (605)
T 1m9s_A           44 SIDQIIANNSDIKS-VQ-GIQYLPNVTKLFLNGNKLTD-IKP-LTNLKNLGWLFLDENKIKD-LS-SLK-----------  106 (605)
T ss_dssp             TCCCCBCTTCCCCC-CT-TGGGCTTCCEEECTTSCCCC-CGG-GGGCTTCCEEECCSSCCCC-CT-TST-----------
T ss_pred             CCCEEECcCCCCCC-Ch-HHccCCCCCEEEeeCCCCCC-Chh-hccCCCCCEEECcCCCCCC-Ch-hhc-----------
Confidence            36778888888876 44 57888999999999998884 443 7788889999999888754 22 232           


Q ss_pred             CcccccCCCCCCcEEEccCCeecccCCccCCCCCCCcEEEcccCcceeccCccccCCCCCCEEeCCCCc-----------
Q 039561           81 KAFEYSTNLNVLRVIELSKNNFLGEIAKGVTNPGASQTLNLSQNSFSRTIPESIGSMKSLESIDFSANH-----------  149 (190)
Q Consensus        81 ~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~l~l~~N~-----------  149 (190)
                             .+++|+.|++++|.+.+ + +.+..++.|+.|++++|.+++.  ..+..+++|+.|++++|.           
T Consensus       107 -------~l~~L~~L~Ls~N~l~~-l-~~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~~~~l~~l~  175 (605)
T 1m9s_A          107 -------DLKKLKSLSLEHNGISD-I-NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVPLAGLT  175 (605)
T ss_dssp             -------TCTTCCEEECTTSCCCC-C-GGGGGCTTCSEEECCSSCCCCC--GGGGSCTTCSEEECCSSCCCCCGGGTTCT
T ss_pred             -------cCCCCCEEEecCCCCCC-C-ccccCCCccCEEECCCCccCCc--hhhcccCCCCEEECcCCcCCCchhhccCC
Confidence                   36677777777777763 3 3366677777777777777643  456677777777777775           


Q ss_pred             ---eEEeecccccccCCccccccccccccccCCcccCCCC
Q 039561          150 ---YLNLSNNNLTGEIPSGIQLQGFHQSRFAGSELCGAPF  186 (190)
Q Consensus       150 ---~l~l~~N~l~g~~p~~~~~~~l~~~~~~~n~l~~~~~  186 (190)
                         .|+|++|.|+ .+|....+.+|+.+.+++|.+++.|.
T Consensus       176 ~L~~L~Ls~N~i~-~l~~l~~l~~L~~L~L~~N~l~~~p~  214 (605)
T 1m9s_A          176 KLQNLYLSKNHIS-DLRALAGLKNLDVLELFSQECLNKPI  214 (605)
T ss_dssp             TCCEEECCSSCCC-BCGGGTTCTTCSEEECCSEEEECCCC
T ss_pred             CCCEEECcCCCCC-CChHHccCCCCCEEEccCCcCcCCcc
Confidence               6778888887 45654477888888888887776654

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=99.75  E-value=1.7e-17  Score=118.92  Aligned_cols=125  Identities=18%  Similarity=0.200  Sum_probs=106.1

Q ss_pred             cceeccCCccccCCCcccCCCCCCcEEEcccCcccCcCCccccCCCCccEEeccCCcccCCCcHHHHHHHHHHHhhcCCc
Q 039561            3 QQGLKIQHKFSRSFPTSTGALSSLESLHLHRNHLSGAIPLSLQNGTHFEVLDLRENAFIRDVPKWIKKSLLALFMMKGKA   82 (190)
Q Consensus         3 ~~L~l~~n~l~~~~p~~l~~l~~L~~l~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~~~~~l~~~~~~~   82 (190)
                      ++++++++.++. +|..+.  +++++|++++|.++ .+|..|..+++|++|++++|.+.+..+..+..            
T Consensus        13 ~~l~~~~~~l~~-ip~~~~--~~l~~L~L~~n~i~-~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~------------   76 (193)
T 2wfh_A           13 TVVRCSNKGLKV-LPKGIP--RDVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSN------------   76 (193)
T ss_dssp             TEEECTTSCCSS-CCSCCC--TTCCEEECCSSCCC-SCCGGGGGCTTCCEEECCSSCCCCCCTTTTTT------------
T ss_pred             CEEEcCCCCCCc-CCCCCC--CCCCEEECCCCcCc-hhHHHhhcccCCCEEECCCCcCCEeCHhHccC------------
Confidence            467889999886 776554  68999999999999 78888999999999999999987655554544            


Q ss_pred             ccccCCCCCCcEEEccCCeecccCCccCCCCCCCcEEEcccCcceeccCccccCCCCCCEEeCCCCc
Q 039561           83 FEYSTNLNVLRVIELSKNNFLGEIAKGVTNPGASQTLNLSQNSFSRTIPESIGSMKSLESIDFSANH  149 (190)
Q Consensus        83 ~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~l~l~~N~  149 (190)
                            +++|++|++++|.+++..+..+..+++|+.|++++|.+++..+..+..+++|+.+++++|.
T Consensus        77 ------l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~  137 (193)
T 2wfh_A           77 ------MTQLLTLILSYNRLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANP  137 (193)
T ss_dssp             ------CTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSC
T ss_pred             ------CCCCCEEECCCCccCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCC
Confidence                  8999999999999997777789999999999999999996555578899999988766665

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=99.74  E-value=1.6e-18  Score=146.47  Aligned_cols=129  Identities=20%  Similarity=0.231  Sum_probs=111.7

Q ss_pred             CCcccCCCCCCcEEEcccCcccCcCCccccCCCCccEEeccCCcccCCCcHHHHHHHHHHHhhcCCcccccCCCCCCcEE
Q 039561           16 FPTSTGALSSLESLHLHRNHLSGAIPLSLQNGTHFEVLDLRENAFIRDVPKWIKKSLLALFMMKGKAFEYSTNLNVLRVI   95 (190)
Q Consensus        16 ~p~~l~~l~~L~~l~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~~~~~l~~~~~~~~~~~~~~~~L~~L   95 (190)
                      .+..+..++.|+.|++++|.+. .+|..+..+++|++|++++|.+. .+|..+..                  +++|++|
T Consensus       216 ~~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~------------------l~~L~~L  275 (727)
T 4b8c_D          216 PKDSKYDDQLWHALDLSNLQIF-NISANIFKYDFLTRLYLNGNSLT-ELPAEIKN------------------LSNLRVL  275 (727)
T ss_dssp             ------CCCCCCEEECTTSCCS-CCCGGGGGCCSCSCCBCTTSCCS-CCCGGGGG------------------GTTCCEE
T ss_pred             ChhhhccCCCCcEEECCCCCCC-CCChhhcCCCCCCEEEeeCCcCc-ccChhhhC------------------CCCCCEE
Confidence            4667888999999999999998 78878888999999999999987 78877765                  9999999


Q ss_pred             EccCCeecccCCccCCCCCCCcEEEcccCcceeccCccccCCCCCCEEeCCCCc-----------------eEEeecccc
Q 039561           96 ELSKNNFLGEIAKGVTNPGASQTLNLSQNSFSRTIPESIGSMKSLESIDFSANH-----------------YLNLSNNNL  158 (190)
Q Consensus        96 ~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~l~l~~N~-----------------~l~l~~N~l  158 (190)
                      +|++|.++ .+|..++.+++|++|+|++|.++ .+|..|+.+++|+.|++++|.                 .+++++|.+
T Consensus       276 ~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~~~~~l~l~~N~l  353 (727)
T 4b8c_D          276 DLSHNRLT-SLPAELGSCFQLKYFYFFDNMVT-TLPWEFGNLCNLQFLGVEGNPLEKQFLKILTEKSVTGLIFYLRDNRP  353 (727)
T ss_dssp             ECTTSCCS-SCCSSGGGGTTCSEEECCSSCCC-CCCSSTTSCTTCCCEECTTSCCCSHHHHHHHHHHHHHHHHHHHHCCC
T ss_pred             eCcCCcCC-ccChhhcCCCCCCEEECCCCCCC-ccChhhhcCCCccEEeCCCCccCCCChHHHhhcchhhhHHhhccCcc
Confidence            99999998 88999999999999999999998 889889999999999999998                 478999999


Q ss_pred             cccCCccc
Q 039561          159 TGEIPSGI  166 (190)
Q Consensus       159 ~g~~p~~~  166 (190)
                      +|.+|..+
T Consensus       354 ~~~~p~~l  361 (727)
T 4b8c_D          354 EIPLPHER  361 (727)
T ss_dssp             CCCCCCC-
T ss_pred             cCcCcccc
Confidence            99998864

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=99.74  E-value=1.2e-17  Score=134.54  Aligned_cols=172  Identities=25%  Similarity=0.334  Sum_probs=115.6

Q ss_pred             CcceeccCCccccCCCcccCCCCCCcEEEcccCcccCcCCccccCCCCccEEeccCCcccCCCcHHHHHHHHHHHhhc--
Q 039561            2 LQQGLKIQHKFSRSFPTSTGALSSLESLHLHRNHLSGAIPLSLQNGTHFEVLDLRENAFIRDVPKWIKKSLLALFMMK--   79 (190)
Q Consensus         2 L~~L~l~~n~l~~~~p~~l~~l~~L~~l~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~~~~~l~~~~--   79 (190)
                      |++|++++|.+++..|  ++.+++|++|++++|.++ .++ .+..+++|+.|++++|.+.+..+  +. .+++|..+.  
T Consensus       201 L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~-~~~-~l~~l~~L~~L~l~~n~l~~~~~--~~-~l~~L~~L~l~  273 (466)
T 1o6v_A          201 LESLIATNNQISDITP--LGILTNLDELSLNGNQLK-DIG-TLASLTNLTDLDLANNQISNLAP--LS-GLTKLTELKLG  273 (466)
T ss_dssp             CSEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCC-CCG-GGGGCTTCSEEECCSSCCCCCGG--GT-TCTTCSEEECC
T ss_pred             CCEEEecCCccccccc--ccccCCCCEEECCCCCcc-cch-hhhcCCCCCEEECCCCccccchh--hh-cCCCCCEEECC
Confidence            6677777777776433  566777777777777776 333 45566777777777777654332  21 133332221  


Q ss_pred             C----CcccccCCCCCCcEEEccCCeecccCCccCCCCCCCcEEEcccCcceeccCccccCCCCCCEEeCCCCc------
Q 039561           80 G----KAFEYSTNLNVLRVIELSKNNFLGEIAKGVTNPGASQTLNLSQNSFSRTIPESIGSMKSLESIDFSANH------  149 (190)
Q Consensus        80 ~----~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~l~l~~N~------  149 (190)
                      +    ..+ .+..+++|+.|++++|.+.+. +. +..+++|+.|++++|.+++..|  +..+++|+.|++++|.      
T Consensus       274 ~n~l~~~~-~~~~l~~L~~L~L~~n~l~~~-~~-~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~  348 (466)
T 1o6v_A          274 ANQISNIS-PLAGLTALTNLELNENQLEDI-SP-ISNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFYNNKVSDVSS  348 (466)
T ss_dssp             SSCCCCCG-GGTTCTTCSEEECCSSCCSCC-GG-GGGCTTCSEEECCSSCCSCCGG--GGGCTTCCEEECCSSCCCCCGG
T ss_pred             CCccCccc-cccCCCccCeEEcCCCcccCc-hh-hcCCCCCCEEECcCCcCCCchh--hccCccCCEeECCCCccCCchh
Confidence            1    111 145577888888888888743 33 6777888888888888875544  6778888888888886      


Q ss_pred             --------eEEeecccccccCCccccccccccccccCCcccCCCC
Q 039561          150 --------YLNLSNNNLTGEIPSGIQLQGFHQSRFAGSELCGAPF  186 (190)
Q Consensus       150 --------~l~l~~N~l~g~~p~~~~~~~l~~~~~~~n~l~~~~~  186 (190)
                              ++++++|.+++..| ...+..++.+.+++|.+.+.|.
T Consensus       349 l~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~l~~n~~~~~p~  392 (466)
T 1o6v_A          349 LANLTNINWLSAGHNQISDLTP-LANLTRITQLGLNDQAWTNAPV  392 (466)
T ss_dssp             GTTCTTCCEEECCSSCCCBCGG-GTTCTTCCEEECCCEEEECCCB
T ss_pred             hccCCCCCEEeCCCCccCccch-hhcCCCCCEEeccCCcccCCch
Confidence                    78888888886666 4478888888888887776553

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=99.73  E-value=2.4e-17  Score=127.68  Aligned_cols=173  Identities=16%  Similarity=0.191  Sum_probs=101.7

Q ss_pred             CcceeccCCccccCCCcccCCCCCCcEEEcccCcccCcCCccccCCCCccEEeccCCcccCCCcHHHHHHHHHHHhhc--
Q 039561            2 LQQGLKIQHKFSRSFPTSTGALSSLESLHLHRNHLSGAIPLSLQNGTHFEVLDLRENAFIRDVPKWIKKSLLALFMMK--   79 (190)
Q Consensus         2 L~~L~l~~n~l~~~~p~~l~~l~~L~~l~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~~~~~l~~~~--   79 (190)
                      |++|++++|.....++ .+..+++|+++++++|.++ ..+. +..+++|+.|++++|.+.+. +. +. .++.|..+.  
T Consensus       134 L~~L~l~~n~~~~~~~-~~~~l~~L~~L~l~~~~~~-~~~~-~~~l~~L~~L~l~~n~l~~~-~~-~~-~l~~L~~L~l~  207 (347)
T 4fmz_A          134 MYSLNLGANHNLSDLS-PLSNMTGLNYLTVTESKVK-DVTP-IANLTDLYSLSLNYNQIEDI-SP-LA-SLTSLHYFTAY  207 (347)
T ss_dssp             CCEEECTTCTTCCCCG-GGTTCTTCCEEECCSSCCC-CCGG-GGGCTTCSEEECTTSCCCCC-GG-GG-GCTTCCEEECC
T ss_pred             eeEEECCCCCCccccc-chhhCCCCcEEEecCCCcC-Cchh-hccCCCCCEEEccCCccccc-cc-cc-CCCccceeecc
Confidence            6677777775554333 4677777777777777776 3332 56677777777777775532 22 11 133332221  


Q ss_pred             C-Ccc--cccCCCCCCcEEEccCCeecccCCccCCCCCCCcEEEcccCcceeccCccccCCCCCCEEeCCCCc-------
Q 039561           80 G-KAF--EYSTNLNVLRVIELSKNNFLGEIAKGVTNPGASQTLNLSQNSFSRTIPESIGSMKSLESIDFSANH-------  149 (190)
Q Consensus        80 ~-~~~--~~~~~~~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~l~l~~N~-------  149 (190)
                      . .+.  ..+..+++|++|++++|.+.+ ++. +..+++|+.|++++|.+++ + +.+..+++|+.+++++|.       
T Consensus       208 ~n~l~~~~~~~~~~~L~~L~l~~n~l~~-~~~-~~~l~~L~~L~l~~n~l~~-~-~~~~~l~~L~~L~l~~n~l~~~~~~  283 (347)
T 4fmz_A          208 VNQITDITPVANMTRLNSLKIGNNKITD-LSP-LANLSQLTWLEIGTNQISD-I-NAVKDLTKLKMLNVGSNQISDISVL  283 (347)
T ss_dssp             SSCCCCCGGGGGCTTCCEEECCSSCCCC-CGG-GTTCTTCCEEECCSSCCCC-C-GGGTTCTTCCEEECCSSCCCCCGGG
T ss_pred             cCCCCCCchhhcCCcCCEEEccCCccCC-Ccc-hhcCCCCCEEECCCCccCC-C-hhHhcCCCcCEEEccCCccCCChhh
Confidence            0 000  114456667777777776653 333 5666677777777776663 2 346666667777766665       


Q ss_pred             -------eEEeecccccccCCccc-cccccccccccCCcccCC
Q 039561          150 -------YLNLSNNNLTGEIPSGI-QLQGFHQSRFAGSELCGA  184 (190)
Q Consensus       150 -------~l~l~~N~l~g~~p~~~-~~~~l~~~~~~~n~l~~~  184 (190)
                             +|++++|.+++..|..+ .+.+++.+++++|.+.+.
T Consensus       284 ~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~  326 (347)
T 4fmz_A          284 NNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDI  326 (347)
T ss_dssp             GGCTTCSEEECCSSCCCGGGHHHHHTCTTCSEEECCSSSCCCC
T ss_pred             cCCCCCCEEECcCCcCCCcChhHhhccccCCEEEccCCccccc
Confidence                   56666666665555544 566666666666655544

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=99.73  E-value=6.3e-18  Score=126.67  Aligned_cols=119  Identities=19%  Similarity=0.273  Sum_probs=80.6

Q ss_pred             CcceeccCCccccCCCcccCCCCCCcEEEcccCcccCcCCccccCCCCccEEeccCCcccCCCcHHHHHHHHHHHhhcCC
Q 039561            2 LQQGLKIQHKFSRSFPTSTGALSSLESLHLHRNHLSGAIPLSLQNGTHFEVLDLRENAFIRDVPKWIKKSLLALFMMKGK   81 (190)
Q Consensus         2 L~~L~l~~n~l~~~~p~~l~~l~~L~~l~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~~~~~l~~~~~~   81 (190)
                      |++|++++|.++. ++ .+..+++|++|++++|.++ .++. +..+++|++|++++|.+.+ +|..              
T Consensus        43 L~~L~l~~n~i~~-l~-~l~~l~~L~~L~L~~N~i~-~~~~-l~~l~~L~~L~L~~N~l~~-l~~~--------------  103 (263)
T 1xeu_A           43 VQNFNGDNSNIQS-LA-GMQFFTNLKELHLSHNQIS-DLSP-LKDLTKLEELSVNRNRLKN-LNGI--------------  103 (263)
T ss_dssp             CSEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCC-CCGG-GTTCSSCCEEECCSSCCSC-CTTC--------------
T ss_pred             CcEEECcCCCccc-ch-HHhhCCCCCEEECCCCccC-CChh-hccCCCCCEEECCCCccCC-cCcc--------------
Confidence            5677777777765 44 5667777777777777777 3443 6677777777777777654 2220              


Q ss_pred             cccccCCCCCCcEEEccCCeecccCCccCCCCCCCcEEEcccCcceeccCccccCCCCCCEEeCCCCc
Q 039561           82 AFEYSTNLNVLRVIELSKNNFLGEIAKGVTNPGASQTLNLSQNSFSRTIPESIGSMKSLESIDFSANH  149 (190)
Q Consensus        82 ~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~l~l~~N~  149 (190)
                           . .++|++|++++|.+++ ++ .+..+++|+.|++++|.+++ ++ .+..+++|+.|++++|+
T Consensus       104 -----~-~~~L~~L~L~~N~l~~-~~-~l~~l~~L~~L~Ls~N~i~~-~~-~l~~l~~L~~L~L~~N~  161 (263)
T 1xeu_A          104 -----P-SACLSRLFLDNNELRD-TD-SLIHLKNLEILSIRNNKLKS-IV-MLGFLSKLEVLDLHGNE  161 (263)
T ss_dssp             -----C-CSSCCEEECCSSCCSB-SG-GGTTCTTCCEEECTTSCCCB-CG-GGGGCTTCCEEECTTSC
T ss_pred             -----c-cCcccEEEccCCccCC-Ch-hhcCcccccEEECCCCcCCC-Ch-HHccCCCCCEEECCCCc
Confidence                 1 1567888888888764 33 47777888888888888874 33 57777778877766665

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=99.72  E-value=6.7e-17  Score=132.94  Aligned_cols=161  Identities=22%  Similarity=0.331  Sum_probs=112.2

Q ss_pred             CcceeccCCccccCCCcccCCCCCCcEEEcccCcccCcCCccccCCCCccEEeccCCcccCCCcHHHHHHHHHHHhhcC-
Q 039561            2 LQQGLKIQHKFSRSFPTSTGALSSLESLHLHRNHLSGAIPLSLQNGTHFEVLDLRENAFIRDVPKWIKKSLLALFMMKG-   80 (190)
Q Consensus         2 L~~L~l~~n~l~~~~p~~l~~l~~L~~l~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~~~~~l~~~~~-   80 (190)
                      +++|++++|.+++ +|..+.  ++|++|++++|.++ .+|   ..+++|++|++++|.+.+ +|. +...++.|..-.. 
T Consensus        61 L~~L~Ls~n~L~~-lp~~l~--~~L~~L~Ls~N~l~-~ip---~~l~~L~~L~Ls~N~l~~-ip~-l~~~L~~L~Ls~N~  131 (571)
T 3cvr_A           61 FSELQLNRLNLSS-LPDNLP--PQITVLEITQNALI-SLP---ELPASLEYLDACDNRLST-LPE-LPASLKHLDVDNNQ  131 (571)
T ss_dssp             CSEEECCSSCCSC-CCSCCC--TTCSEEECCSSCCS-CCC---CCCTTCCEEECCSSCCSC-CCC-CCTTCCEEECCSSC
T ss_pred             ccEEEeCCCCCCc-cCHhHc--CCCCEEECcCCCCc-ccc---cccCCCCEEEccCCCCCC-cch-hhcCCCEEECCCCc
Confidence            5678888888887 676553  67888888888888 666   346788888888888765 555 4321111111011 


Q ss_pred             --CcccccCCCCCCcEEEccCCeecccCCccCCCCCCCcEEEcccCcceeccCccccCCCCCCEEeCCCCc---------
Q 039561           81 --KAFEYSTNLNVLRVIELSKNNFLGEIAKGVTNPGASQTLNLSQNSFSRTIPESIGSMKSLESIDFSANH---------  149 (190)
Q Consensus        81 --~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~l~l~~N~---------  149 (190)
                        .+|.   .+++|+.|++++|.+++ +|.   .+++|+.|++++|.+++ +|. +.  ++|+.|++++|.         
T Consensus       132 l~~lp~---~l~~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~L~~-lp~-l~--~~L~~L~Ls~N~L~~lp~~~~  200 (571)
T 3cvr_A          132 LTMLPE---LPALLEYINADNNQLTM-LPE---LPTSLEVLSVRNNQLTF-LPE-LP--ESLEALDVSTNLLESLPAVPV  200 (571)
T ss_dssp             CSCCCC---CCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSC-CCC-CC--TTCCEEECCSSCCSSCCCCC-
T ss_pred             CCCCCC---cCccccEEeCCCCccCc-CCC---cCCCcCEEECCCCCCCC-cch-hh--CCCCEEECcCCCCCchhhHHH
Confidence              1233   36778888888888874 565   46788888888888874 666 54  778888888873         


Q ss_pred             ----------eEEeecccccccCCccc-cccccccccccCCcccC
Q 039561          150 ----------YLNLSNNNLTGEIPSGI-QLQGFHQSRFAGSELCG  183 (190)
Q Consensus       150 ----------~l~l~~N~l~g~~p~~~-~~~~l~~~~~~~n~l~~  183 (190)
                                +|++++|.|+ .+|..+ .+.+++.+++++|.+++
T Consensus       201 ~L~~~~~~L~~L~Ls~N~l~-~lp~~l~~l~~L~~L~L~~N~l~~  244 (571)
T 3cvr_A          201 RNHHSEETEIFFRCRENRIT-HIPENILSLDPTCTIILEDNPLSS  244 (571)
T ss_dssp             -------CCEEEECCSSCCC-CCCGGGGGSCTTEEEECCSSSCCH
T ss_pred             hhhcccccceEEecCCCcce-ecCHHHhcCCCCCEEEeeCCcCCC
Confidence                      5788888888 678765 78888888888886653

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=99.72  E-value=4.5e-17  Score=116.50  Aligned_cols=103  Identities=19%  Similarity=0.245  Sum_probs=87.3

Q ss_pred             CcEEEcccCcccCcCCccccCCCCccEEeccCCcccCCCcH-HHHHHHHHHHhhcCCcccccCCCCCCcEEEccCCeecc
Q 039561           26 LESLHLHRNHLSGAIPLSLQNGTHFEVLDLRENAFIRDVPK-WIKKSLLALFMMKGKAFEYSTNLNVLRVIELSKNNFLG  104 (190)
Q Consensus        26 L~~l~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~-~~~~~~~~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~  104 (190)
                      .+++++++|.++ .+|..+..  .++.|++++|.+.+..+. .+..                  +++|++|++++|.+++
T Consensus        10 ~~~l~~s~~~l~-~ip~~~~~--~l~~L~l~~n~i~~~~~~~~~~~------------------l~~L~~L~Ls~N~l~~   68 (192)
T 1w8a_A           10 GTTVDCTGRGLK-EIPRDIPL--HTTELLLNDNELGRISSDGLFGR------------------LPHLVKLELKRNQLTG   68 (192)
T ss_dssp             TTEEECTTSCCS-SCCSCCCT--TCSEEECCSCCCCSBCCSCSGGG------------------CTTCCEEECCSSCCCC
T ss_pred             CCEEEcCCCCcC-cCccCCCC--CCCEEECCCCcCCccCCcccccc------------------CCCCCEEECCCCCCCC
Confidence            378999999998 78876643  899999999998765443 2433                  8999999999999998


Q ss_pred             cCCccCCCCCCCcEEEcccCcceeccCccccCCCCCCEEeCCCCc
Q 039561          105 EIAKGVTNPGASQTLNLSQNSFSRTIPESIGSMKSLESIDFSANH  149 (190)
Q Consensus       105 ~~p~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~l~l~~N~  149 (190)
                      ..|..+..+++|+.|++++|.+++..+..+..+++|+.|++++|+
T Consensus        69 ~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~  113 (192)
T 1w8a_A           69 IEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQ  113 (192)
T ss_dssp             BCTTTTTTCTTCCEEECCSCCCCEECSSSSTTCTTCCEEECCSSC
T ss_pred             cCHhHcCCcccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCc
Confidence            889999999999999999999998888889999999977766654

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=99.71  E-value=1e-18  Score=137.43  Aligned_cols=185  Identities=15%  Similarity=0.178  Sum_probs=138.1

Q ss_pred             CCcceeccCC---ccccCCCccc-------CCCCCCcEEEcccCcccC----cCCccccCCCCccEEeccCCcccCCCcH
Q 039561            1 MLQQGLKIQH---KFSRSFPTST-------GALSSLESLHLHRNHLSG----AIPLSLQNGTHFEVLDLRENAFIRDVPK   66 (190)
Q Consensus         1 ~L~~L~l~~n---~l~~~~p~~l-------~~l~~L~~l~l~~n~~~~----~~~~~~~~l~~L~~L~l~~n~~~~~~p~   66 (190)
                      .|++|++++|   .+++.+|..+       ..+++|++|++++|.++.    .++..+..+++|++|++++|.+....+.
T Consensus        61 ~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~  140 (386)
T 2ca6_A           61 DLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGA  140 (386)
T ss_dssp             TCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHH
T ss_pred             CccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCCcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHH
Confidence            3788899885   4445556554       688999999999999985    3666777889999999999987655454


Q ss_pred             HHHHHHHHH------------Hhh--cC------Ccc---cccCCCCCCcEEEccCCeecc-----cCCccCCCCCCCcE
Q 039561           67 WIKKSLLAL------------FMM--KG------KAF---EYSTNLNVLRVIELSKNNFLG-----EIAKGVTNPGASQT  118 (190)
Q Consensus        67 ~~~~~~~~l------------~~~--~~------~~~---~~~~~~~~L~~L~l~~n~l~~-----~~p~~~~~l~~L~~  118 (190)
                      .+...+..+            ..+  ..      .++   ..+..+++|+.|++++|.++.     ..+..+..+++|+.
T Consensus       141 ~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~  220 (386)
T 2ca6_A          141 KIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKV  220 (386)
T ss_dssp             HHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCE
T ss_pred             HHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccE
Confidence            454434332            111  11      111   234467889999999998872     23447788899999


Q ss_pred             EEcccCcce----eccCccccCCCCCCEEeCCCCc----------------------eEEeecccccc----cCCccc--
Q 039561          119 LNLSQNSFS----RTIPESIGSMKSLESIDFSANH----------------------YLNLSNNNLTG----EIPSGI--  166 (190)
Q Consensus       119 L~l~~n~l~----~~~p~~l~~l~~L~~l~l~~N~----------------------~l~l~~N~l~g----~~p~~~--  166 (190)
                      |++++|.++    +.+|..+..+++|+.|++++|.                      +|++++|.+++    .+|..+  
T Consensus       221 L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~  300 (386)
T 2ca6_A          221 LDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDE  300 (386)
T ss_dssp             EECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHH
T ss_pred             EECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHh
Confidence            999999986    5678888889999999999886                      79999999996    477776  


Q ss_pred             cccccccccccCCcccCCC
Q 039561          167 QLQGFHQSRFAGSELCGAP  185 (190)
Q Consensus       167 ~~~~l~~~~~~~n~l~~~~  185 (190)
                      .+.+++.+.+.+|.+.+.+
T Consensus       301 ~l~~L~~L~l~~N~l~~~~  319 (386)
T 2ca6_A          301 KMPDLLFLELNGNRFSEED  319 (386)
T ss_dssp             HCTTCCEEECTTSBSCTTS
T ss_pred             cCCCceEEEccCCcCCcch
Confidence            3689999999999877654

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=99.71  E-value=5.8e-17  Score=125.50  Aligned_cols=169  Identities=23%  Similarity=0.275  Sum_probs=116.9

Q ss_pred             CcceeccCCccccCCCcccCCCCCCcEEEcccCcccCcCCccccCCCCccEEeccCCcccCCCcHHHHHHHHHHHhh--c
Q 039561            2 LQQGLKIQHKFSRSFPTSTGALSSLESLHLHRNHLSGAIPLSLQNGTHFEVLDLRENAFIRDVPKWIKKSLLALFMM--K   79 (190)
Q Consensus         2 L~~L~l~~n~l~~~~p~~l~~l~~L~~l~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~~~~~l~~~--~   79 (190)
                      |++|++++|.+.+..+  +..+++|++|++++|.++ .++. +..+++|+.+++++|.+.+..+  +. .+++|..+  .
T Consensus       157 L~~L~l~~~~~~~~~~--~~~l~~L~~L~l~~n~l~-~~~~-~~~l~~L~~L~l~~n~l~~~~~--~~-~~~~L~~L~l~  229 (347)
T 4fmz_A          157 LNYLTVTESKVKDVTP--IANLTDLYSLSLNYNQIE-DISP-LASLTSLHYFTAYVNQITDITP--VA-NMTRLNSLKIG  229 (347)
T ss_dssp             CCEEECCSSCCCCCGG--GGGCTTCSEEECTTSCCC-CCGG-GGGCTTCCEEECCSSCCCCCGG--GG-GCTTCCEEECC
T ss_pred             CcEEEecCCCcCCchh--hccCCCCCEEEccCCccc-cccc-ccCCCccceeecccCCCCCCch--hh-cCCcCCEEEcc
Confidence            5677777777765322  667777777777777776 3333 5566677777777766554322  11 23333222  1


Q ss_pred             CC-c--ccccCCCCCCcEEEccCCeecccCCccCCCCCCCcEEEcccCcceeccCccccCCCCCCEEeCCCCc-------
Q 039561           80 GK-A--FEYSTNLNVLRVIELSKNNFLGEIAKGVTNPGASQTLNLSQNSFSRTIPESIGSMKSLESIDFSANH-------  149 (190)
Q Consensus        80 ~~-~--~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~l~l~~N~-------  149 (190)
                      +. +  ...+..+++|++|++++|.+.+ + +.+..+++|+.|++++|.+++ + +.+..+++|+.|++++|.       
T Consensus       230 ~n~l~~~~~~~~l~~L~~L~l~~n~l~~-~-~~~~~l~~L~~L~l~~n~l~~-~-~~~~~l~~L~~L~L~~n~l~~~~~~  305 (347)
T 4fmz_A          230 NNKITDLSPLANLSQLTWLEIGTNQISD-I-NAVKDLTKLKMLNVGSNQISD-I-SVLNNLSQLNSLFLNNNQLGNEDME  305 (347)
T ss_dssp             SSCCCCCGGGTTCTTCCEEECCSSCCCC-C-GGGTTCTTCCEEECCSSCCCC-C-GGGGGCTTCSEEECCSSCCCGGGHH
T ss_pred             CCccCCCcchhcCCCCCEEECCCCccCC-C-hhHhcCCCcCEEEccCCccCC-C-hhhcCCCCCCEEECcCCcCCCcChh
Confidence            11 0  1115568899999999999874 3 457888999999999999984 3 457888999999999997       


Q ss_pred             ---------eEEeecccccccCCccccccccccccccCCccc
Q 039561          150 ---------YLNLSNNNLTGEIPSGIQLQGFHQSRFAGSELC  182 (190)
Q Consensus       150 ---------~l~l~~N~l~g~~p~~~~~~~l~~~~~~~n~l~  182 (190)
                               ++++++|.+++..| ...+.+++.+++++|.++
T Consensus       306 ~l~~l~~L~~L~L~~n~l~~~~~-~~~l~~L~~L~l~~N~i~  346 (347)
T 4fmz_A          306 VIGGLTNLTTLFLSQNHITDIRP-LASLSKMDSADFANQVIK  346 (347)
T ss_dssp             HHHTCTTCSEEECCSSSCCCCGG-GGGCTTCSEESSSCC---
T ss_pred             HhhccccCCEEEccCCccccccC-hhhhhccceeehhhhccc
Confidence                     89999999995544 558999999999999664

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=99.71  E-value=9e-17  Score=122.05  Aligned_cols=132  Identities=20%  Similarity=0.289  Sum_probs=105.5

Q ss_pred             CCcceeccCCccccCCCcccCCCCCCcEEEcccCcccCcCCccccCCCCccEEeccCCcccCCCcHHHHHHHHHHHhhcC
Q 039561            1 MLQQGLKIQHKFSRSFPTSTGALSSLESLHLHRNHLSGAIPLSLQNGTHFEVLDLRENAFIRDVPKWIKKSLLALFMMKG   80 (190)
Q Consensus         1 ~L~~L~l~~n~l~~~~p~~l~~l~~L~~l~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~~~~~l~~~~~   80 (190)
                      .|++|++++|.+++ +++ +..+++|++|++++|.++ .++ .+..+++|++|++++|.+.+ + +.+..          
T Consensus        69 ~L~~L~L~~n~l~~-~~~-l~~l~~L~~L~l~~n~l~-~~~-~l~~l~~L~~L~L~~n~i~~-~-~~l~~----------  132 (291)
T 1h6t_A           69 NVTKLFLNGNKLTD-IKP-LANLKNLGWLFLDENKVK-DLS-SLKDLKKLKSLSLEHNGISD-I-NGLVH----------  132 (291)
T ss_dssp             TCCEEECCSSCCCC-CGG-GTTCTTCCEEECCSSCCC-CGG-GGTTCTTCCEEECTTSCCCC-C-GGGGG----------
T ss_pred             CCCEEEccCCccCC-Ccc-cccCCCCCEEECCCCcCC-CCh-hhccCCCCCEEECCCCcCCC-C-hhhcC----------
Confidence            37899999999998 444 899999999999999998 455 48889999999999999765 3 23333          


Q ss_pred             CcccccCCCCCCcEEEccCCeecccCCccCCCCCCCcEEEcccCcceeccCccccCCCCCCEEeCCCCc-----------
Q 039561           81 KAFEYSTNLNVLRVIELSKNNFLGEIAKGVTNPGASQTLNLSQNSFSRTIPESIGSMKSLESIDFSANH-----------  149 (190)
Q Consensus        81 ~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~l~l~~N~-----------  149 (190)
                              +++|+.|++++|.+++.  ..++.+++|+.|++++|.+++..+  +..+++|+.|++++|.           
T Consensus       133 --------l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~L~~N~i~~l~~l~~l~  200 (291)
T 1h6t_A          133 --------LPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHISDLRALAGLK  200 (291)
T ss_dssp             --------CTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCBCGGGTTCT
T ss_pred             --------CCCCCEEEccCCcCCcc--hhhccCCCCCEEEccCCccccchh--hcCCCccCEEECCCCcCCCChhhccCC
Confidence                    77888888888888743  457778888888888888875433  7788888888888886           


Q ss_pred             ---eEEeecccccc
Q 039561          150 ---YLNLSNNNLTG  160 (190)
Q Consensus       150 ---~l~l~~N~l~g  160 (190)
                         +|++++|.++.
T Consensus       201 ~L~~L~l~~n~i~~  214 (291)
T 1h6t_A          201 NLDVLELFSQECLN  214 (291)
T ss_dssp             TCSEEEEEEEEEEC
T ss_pred             CCCEEECcCCcccC
Confidence               78899999873

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=99.71  E-value=1.4e-16  Score=112.32  Aligned_cols=132  Identities=19%  Similarity=0.141  Sum_probs=105.2

Q ss_pred             cceeccCCccccCCCcccCCCCCCcEEEcccCcccCcCCccccCCCCccEEeccCCcccCCCcHHHHHHHHHHHhhcCCc
Q 039561            3 QQGLKIQHKFSRSFPTSTGALSSLESLHLHRNHLSGAIPLSLQNGTHFEVLDLRENAFIRDVPKWIKKSLLALFMMKGKA   82 (190)
Q Consensus         3 ~~L~l~~n~l~~~~p~~l~~l~~L~~l~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~~~~~l~~~~~~~   82 (190)
                      +.+++++++++. +|..+  .+++++|++++|.+++..+..+..+++|++|++++|.+.+..+..+.             
T Consensus        10 ~~l~~~~~~l~~-~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~-------------   73 (177)
T 2o6r_A           10 TEIRCNSKGLTS-VPTGI--PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFD-------------   73 (177)
T ss_dssp             TEEECCSSCCSS-CCTTC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTT-------------
T ss_pred             CEEEecCCCCcc-CCCCC--CCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHcc-------------
Confidence            568889998886 66544  37999999999999965556678899999999999998754443333             


Q ss_pred             ccccCCCCCCcEEEccCCeecccCCccCCCCCCCcEEEcccCcceeccCccccCCCCCCEEeCCCCceEEeecccccccC
Q 039561           83 FEYSTNLNVLRVIELSKNNFLGEIAKGVTNPGASQTLNLSQNSFSRTIPESIGSMKSLESIDFSANHYLNLSNNNLTGEI  162 (190)
Q Consensus        83 ~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~l~l~~N~~l~l~~N~l~g~~  162 (190)
                           .+++|++|++++|.+++..+..+..+++|+.|++++|.+++..+..+..+++|+.++        +++|.+.+..
T Consensus        74 -----~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~--------l~~N~~~~~~  140 (177)
T 2o6r_A           74 -----KLTKLTILYLHENKLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIW--------LHTNPWDCSC  140 (177)
T ss_dssp             -----TCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEE--------CCSSCBCCCH
T ss_pred             -----CCCccCEEECCCCCccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEE--------ecCCCeeccC
Confidence                 389999999999999966666788999999999999999965555578888898555        6777777654


Q ss_pred             C
Q 039561          163 P  163 (190)
Q Consensus       163 p  163 (190)
                      |
T Consensus       141 ~  141 (177)
T 2o6r_A          141 P  141 (177)
T ss_dssp             H
T ss_pred             c
Confidence            4

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=99.71  E-value=5.7e-17  Score=116.31  Aligned_cols=124  Identities=17%  Similarity=0.173  Sum_probs=104.7

Q ss_pred             CCcceeccCCccccCCCcccCCCCCCcEEEcccCcccCcCCccccCCCCccEEeccCCcccCCCcHHHHHHHHHHHhhcC
Q 039561            1 MLQQGLKIQHKFSRSFPTSTGALSSLESLHLHRNHLSGAIPLSLQNGTHFEVLDLRENAFIRDVPKWIKKSLLALFMMKG   80 (190)
Q Consensus         1 ~L~~L~l~~n~l~~~~p~~l~~l~~L~~l~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~~~~~l~~~~~   80 (190)
                      .|++|++++|.++.  ++.+..+++|++|++++|.+++..+..+..+++|++|++++|.+.+..|..+..          
T Consensus        67 ~L~~L~l~~n~~~~--~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~l~~----------  134 (197)
T 4ezg_A           67 NIKDLTINNIHATN--YNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINT----------  134 (197)
T ss_dssp             TCSEEEEESCCCSC--CGGGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEEECCSSBCBGGGHHHHTT----------
T ss_pred             CCCEEEccCCCCCc--chhhhcCCCCCEEEeECCccCcccChhhcCCCCCCEEEecCCccCcHhHHHHhh----------
Confidence            37899999997764  447899999999999999999767888999999999999999988767776655          


Q ss_pred             CcccccCCCCCCcEEEccCCe-ecccCCccCCCCCCCcEEEcccCcceeccCccccCCCCCCEEeCCCC
Q 039561           81 KAFEYSTNLNVLRVIELSKNN-FLGEIAKGVTNPGASQTLNLSQNSFSRTIPESIGSMKSLESIDFSAN  148 (190)
Q Consensus        81 ~~~~~~~~~~~L~~L~l~~n~-l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~l~l~~N  148 (190)
                              +++|++|++++|. ++ .+| .+..+++|+.|++++|.+++ ++ .+..+++|+.|++++|
T Consensus       135 --------l~~L~~L~L~~n~~i~-~~~-~l~~l~~L~~L~l~~n~i~~-~~-~l~~l~~L~~L~l~~N  191 (197)
T 4ezg_A          135 --------LPKVNSIDLSYNGAIT-DIM-PLKTLPELKSLNIQFDGVHD-YR-GIEDFPKLNQLYAFSQ  191 (197)
T ss_dssp             --------CSSCCEEECCSCTBCC-CCG-GGGGCSSCCEEECTTBCCCC-CT-TGGGCSSCCEEEECBC
T ss_pred             --------CCCCCEEEccCCCCcc-ccH-hhcCCCCCCEEECCCCCCcC-hH-HhccCCCCCEEEeeCc
Confidence                    9999999999998 65 566 58889999999999999984 44 6888899996664443

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=99.70  E-value=9.5e-17  Score=129.21  Aligned_cols=173  Identities=22%  Similarity=0.257  Sum_probs=121.5

Q ss_pred             CCcceeccCCccccCCCcccCCCCCCcEEEcccCcccCcCCccccCCCCccEEeccCCcccCCCcHHHHHHHHHHHhhc-
Q 039561            1 MLQQGLKIQHKFSRSFPTSTGALSSLESLHLHRNHLSGAIPLSLQNGTHFEVLDLRENAFIRDVPKWIKKSLLALFMMK-   79 (190)
Q Consensus         1 ~L~~L~l~~n~l~~~~p~~l~~l~~L~~l~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~~~~~l~~~~-   79 (190)
                      .|++|++++|.++. ++ .+..+++|++|++++|.+++..|  +..+++|+.|++++|.+.+ ++ .+. .+++|..+. 
T Consensus       178 ~L~~L~l~~n~l~~-~~-~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~-~~-~l~-~l~~L~~L~l  250 (466)
T 1o6v_A          178 TLERLDISSNKVSD-IS-VLAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLKD-IG-TLA-SLTNLTDLDL  250 (466)
T ss_dssp             TCCEEECCSSCCCC-CG-GGGGCTTCSEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCC-CG-GGG-GCTTCSEEEC
T ss_pred             CCCEEECcCCcCCC-Ch-hhccCCCCCEEEecCCccccccc--ccccCCCCEEECCCCCccc-ch-hhh-cCCCCCEEEC
Confidence            37899999999987 33 58899999999999999995544  6678999999999999765 33 222 233332221 


Q ss_pred             -C-Cc--ccccCCCCCCcEEEccCCeecccCCccCCCCCCCcEEEcccCcceeccCccccCCCCCCEEeCCCCc------
Q 039561           80 -G-KA--FEYSTNLNVLRVIELSKNNFLGEIAKGVTNPGASQTLNLSQNSFSRTIPESIGSMKSLESIDFSANH------  149 (190)
Q Consensus        80 -~-~~--~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~l~l~~N~------  149 (190)
                       + .+  ...+..+++|++|++++|.+.+ ++. +..++.|+.|++++|.+++..+  +..+++|+.|++++|.      
T Consensus       251 ~~n~l~~~~~~~~l~~L~~L~l~~n~l~~-~~~-~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~  326 (466)
T 1o6v_A          251 ANNQISNLAPLSGLTKLTELKLGANQISN-ISP-LAGLTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISDISP  326 (466)
T ss_dssp             CSSCCCCCGGGTTCTTCSEEECCSSCCCC-CGG-GTTCTTCSEEECCSSCCSCCGG--GGGCTTCSEEECCSSCCSCCGG
T ss_pred             CCCccccchhhhcCCCCCEEECCCCccCc-ccc-ccCCCccCeEEcCCCcccCchh--hcCCCCCCEEECcCCcCCCchh
Confidence             1 11  1125567777778887777764 333 6677788888888887774333  6677788888888876      


Q ss_pred             --------eEEeecccccccCCccccccccccccccCCcccCCC
Q 039561          150 --------YLNLSNNNLTGEIPSGIQLQGFHQSRFAGSELCGAP  185 (190)
Q Consensus       150 --------~l~l~~N~l~g~~p~~~~~~~l~~~~~~~n~l~~~~  185 (190)
                              +|++++|.+++ ++....+.+++.+.+++|.+.+.+
T Consensus       327 ~~~l~~L~~L~l~~n~l~~-~~~l~~l~~L~~L~l~~n~l~~~~  369 (466)
T 1o6v_A          327 VSSLTKLQRLFFYNNKVSD-VSSLANLTNINWLSAGHNQISDLT  369 (466)
T ss_dssp             GGGCTTCCEEECCSSCCCC-CGGGTTCTTCCEEECCSSCCCBCG
T ss_pred             hccCccCCEeECCCCccCC-chhhccCCCCCEEeCCCCccCccc
Confidence                    67888888874 454447778888888888666543

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=99.69  E-value=2.2e-16  Score=126.87  Aligned_cols=115  Identities=22%  Similarity=0.282  Sum_probs=55.8

Q ss_pred             CCCcEEEcccCcccCcCCccccCCCCccEEeccCCcccCCCcHHHHHHHHHHHhhc---CCcccccCCCCCCcEEEccCC
Q 039561           24 SSLESLHLHRNHLSGAIPLSLQNGTHFEVLDLRENAFIRDVPKWIKKSLLALFMMK---GKAFEYSTNLNVLRVIELSKN  100 (190)
Q Consensus        24 ~~L~~l~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~~~~~l~~~~---~~~~~~~~~~~~L~~L~l~~n  100 (190)
                      ++|++|++++|.++ .+| .+..+++|++|++++|.+.+ +|..+. .++.|..-.   ..+| .++.+++|++|++++|
T Consensus       131 ~~L~~L~L~~n~l~-~lp-~~~~l~~L~~L~l~~N~l~~-lp~~~~-~L~~L~L~~n~l~~l~-~~~~l~~L~~L~l~~N  205 (454)
T 1jl5_A          131 PLLEYLGVSNNQLE-KLP-ELQNSSFLKIIDVDNNSLKK-LPDLPP-SLEFIAAGNNQLEELP-ELQNLPFLTAIYADNN  205 (454)
T ss_dssp             TTCCEEECCSSCCS-SCC-CCTTCTTCCEEECCSSCCSC-CCCCCT-TCCEEECCSSCCSSCC-CCTTCTTCCEEECCSS
T ss_pred             CCCCEEECcCCCCC-CCc-ccCCCCCCCEEECCCCcCcc-cCCCcc-cccEEECcCCcCCcCc-cccCCCCCCEEECCCC
Confidence            45666666666666 355 35666666666666666543 333221 111110000   0122 3445566666666666


Q ss_pred             eecccCCccCCCCCCCcEEEcccCcceeccCccccCCCCCCEEeCCCCc
Q 039561          101 NFLGEIAKGVTNPGASQTLNLSQNSFSRTIPESIGSMKSLESIDFSANH  149 (190)
Q Consensus       101 ~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~l~l~~N~  149 (190)
                      .+.+ +|...   .+|+.|++++|.++ .+|+ ++.+++|+.+++++|+
T Consensus       206 ~l~~-l~~~~---~~L~~L~l~~n~l~-~lp~-~~~l~~L~~L~l~~N~  248 (454)
T 1jl5_A          206 SLKK-LPDLP---LSLESIVAGNNILE-ELPE-LQNLPFLTTIYADNNL  248 (454)
T ss_dssp             CCSS-CCCCC---TTCCEEECCSSCCS-SCCC-CTTCTTCCEEECCSSC
T ss_pred             cCCc-CCCCc---CcccEEECcCCcCC-cccc-cCCCCCCCEEECCCCc
Confidence            5552 33321   35555555555554 4442 5555555555555554

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=99.69  E-value=3.5e-16  Score=125.70  Aligned_cols=166  Identities=19%  Similarity=0.159  Sum_probs=105.8

Q ss_pred             CcceeccCCccccCCCcccCCCCCCcEEEcccCcccCcCCccccCCCCccEEeccCCcccCCCcHHHHHHHHHHHhhc--
Q 039561            2 LQQGLKIQHKFSRSFPTSTGALSSLESLHLHRNHLSGAIPLSLQNGTHFEVLDLRENAFIRDVPKWIKKSLLALFMMK--   79 (190)
Q Consensus         2 L~~L~l~~n~l~~~~p~~l~~l~~L~~l~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~~~~~l~~~~--   79 (190)
                      +++|++++|.+++ +|..   .++|++|++++|.+++ +|..   .++|++|++++|.+.+ +|... ..++.|..-.  
T Consensus        73 l~~L~l~~~~l~~-lp~~---~~~L~~L~l~~n~l~~-lp~~---~~~L~~L~l~~n~l~~-l~~~~-~~L~~L~L~~n~  142 (454)
T 1jl5_A           73 AHELELNNLGLSS-LPEL---PPHLESLVASCNSLTE-LPEL---PQSLKSLLVDNNNLKA-LSDLP-PLLEYLGVSNNQ  142 (454)
T ss_dssp             CSEEECTTSCCSC-CCSC---CTTCSEEECCSSCCSS-CCCC---CTTCCEEECCSSCCSC-CCSCC-TTCCEEECCSSC
T ss_pred             CCEEEecCCcccc-CCCC---cCCCCEEEccCCcCCc-cccc---cCCCcEEECCCCccCc-ccCCC-CCCCEEECcCCC
Confidence            4667777777776 4431   3567777777777773 5532   2566666666666543 22111 0111110000  


Q ss_pred             -CCcccccCCCCCCcEEEccCCeecccCCccCCCCCCCcEEEcccCcceeccCccccCCCCCCEEeCCCCc---------
Q 039561           80 -GKAFEYSTNLNVLRVIELSKNNFLGEIAKGVTNPGASQTLNLSQNSFSRTIPESIGSMKSLESIDFSANH---------  149 (190)
Q Consensus        80 -~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~l~l~~N~---------  149 (190)
                       ..+| .++.+++|++|++++|++. .+|..+   .+|++|++++|.+++ +| .++.+++|+.+++++|.         
T Consensus       143 l~~lp-~~~~l~~L~~L~l~~N~l~-~lp~~~---~~L~~L~L~~n~l~~-l~-~~~~l~~L~~L~l~~N~l~~l~~~~~  215 (454)
T 1jl5_A          143 LEKLP-ELQNSSFLKIIDVDNNSLK-KLPDLP---PSLEFIAAGNNQLEE-LP-ELQNLPFLTAIYADNNSLKKLPDLPL  215 (454)
T ss_dssp             CSSCC-CCTTCTTCCEEECCSSCCS-CCCCCC---TTCCEEECCSSCCSS-CC-CCTTCTTCCEEECCSSCCSSCCCCCT
T ss_pred             CCCCc-ccCCCCCCCEEECCCCcCc-ccCCCc---ccccEEECcCCcCCc-Cc-cccCCCCCCEEECCCCcCCcCCCCcC
Confidence             1133 3566888888888888887 356543   478888888888874 55 57788888888888886         


Q ss_pred             ---eEEeecccccccCCccccccccccccccCCcccCCC
Q 039561          150 ---YLNLSNNNLTGEIPSGIQLQGFHQSRFAGSELCGAP  185 (190)
Q Consensus       150 ---~l~l~~N~l~g~~p~~~~~~~l~~~~~~~n~l~~~~  185 (190)
                         ++++++|.++ .+|+...+.+++.+.+++|.+.+.|
T Consensus       216 ~L~~L~l~~n~l~-~lp~~~~l~~L~~L~l~~N~l~~l~  253 (454)
T 1jl5_A          216 SLESIVAGNNILE-ELPELQNLPFLTTIYADNNLLKTLP  253 (454)
T ss_dssp             TCCEEECCSSCCS-SCCCCTTCTTCCEEECCSSCCSSCC
T ss_pred             cccEEECcCCcCC-cccccCCCCCCCEEECCCCcCCccc
Confidence               6788888887 6776446777777777777666654

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=99.69  E-value=5.1e-18  Score=130.87  Aligned_cols=159  Identities=13%  Similarity=0.138  Sum_probs=110.6

Q ss_pred             CcceeccCCccccCCCcccCCCCCCcEEEcccCcccCc-CCccccCCCCccEEeccCCcccCCCcHHHHHHHHHHHhhcC
Q 039561            2 LQQGLKIQHKFSRSFPTSTGALSSLESLHLHRNHLSGA-IPLSLQNGTHFEVLDLRENAFIRDVPKWIKKSLLALFMMKG   80 (190)
Q Consensus         2 L~~L~l~~n~l~~~~p~~l~~l~~L~~l~l~~n~~~~~-~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~~~~~l~~~~~   80 (190)
                      ++.+++++|.+.+..+ .+..+++|++|++++|.+++. ++..+..+++|++|++++|.+.+..+..+..          
T Consensus        72 l~~L~l~~n~l~~~~~-~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~----------  140 (336)
T 2ast_B           72 VIAFRCPRSFMDQPLA-EHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAK----------  140 (336)
T ss_dssp             CSEEECTTCEECSCCC-SCCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTT----------
T ss_pred             ceEEEcCCccccccch-hhccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCcccCHHHHHHHhc----------
Confidence            5677888888887544 466788889999988888744 6667778888889998888866555554443          


Q ss_pred             CcccccCCCCCCcEEEccCC-eeccc-CCccCCCCCCCcEEEcccC-cceec-cCccccCCC-CCCEEeCCCC--c----
Q 039561           81 KAFEYSTNLNVLRVIELSKN-NFLGE-IAKGVTNPGASQTLNLSQN-SFSRT-IPESIGSMK-SLESIDFSAN--H----  149 (190)
Q Consensus        81 ~~~~~~~~~~~L~~L~l~~n-~l~~~-~p~~~~~l~~L~~L~l~~n-~l~~~-~p~~l~~l~-~L~~l~l~~N--~----  149 (190)
                              +++|++|++++| .+++. ++..+..+++|+.|++++| .+++. ++..+..++ +|+.|++++|  .    
T Consensus       141 --------~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~  212 (336)
T 2ast_B          141 --------NSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKS  212 (336)
T ss_dssp             --------CTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHH
T ss_pred             --------CCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCCCcccCCHH
Confidence                    677777777777 45542 4555566777777777777 66643 455566677 7777777777  2    


Q ss_pred             -------------eEEeeccc-ccccCCccc-cccccccccccCC
Q 039561          150 -------------YLNLSNNN-LTGEIPSGI-QLQGFHQSRFAGS  179 (190)
Q Consensus       150 -------------~l~l~~N~-l~g~~p~~~-~~~~l~~~~~~~n  179 (190)
                                   +|++++|. +++..+..+ .+.+++.+.+++|
T Consensus       213 ~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~  257 (336)
T 2ast_B          213 DLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRC  257 (336)
T ss_dssp             HHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTC
T ss_pred             HHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCC
Confidence                         67777777 554555444 6677777777777

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=99.69  E-value=6.5e-18  Score=131.97  Aligned_cols=69  Identities=16%  Similarity=0.017  Sum_probs=48.7

Q ss_pred             CcceeccCCccccCCC----cccCCCC-CCcEEEcccCcccCcCCccccCC-----CCccEEeccCCcccCCCcHHHHH
Q 039561            2 LQQGLKIQHKFSRSFP----TSTGALS-SLESLHLHRNHLSGAIPLSLQNG-----THFEVLDLRENAFIRDVPKWIKK   70 (190)
Q Consensus         2 L~~L~l~~n~l~~~~p----~~l~~l~-~L~~l~l~~n~~~~~~~~~~~~l-----~~L~~L~l~~n~~~~~~p~~~~~   70 (190)
                      |++|++++|.+++..+    ..+..++ +|++|++++|.++...+..+..+     ++|++|++++|.+.+..+..+..
T Consensus        24 L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~  102 (362)
T 3goz_A           24 VTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNFLSYKSSDELVK  102 (362)
T ss_dssp             CCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHH
T ss_pred             ceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCCcCChHHHHHHHH
Confidence            6778888888877544    5566777 78888888888875545445443     77888888888877666665554

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=99.69  E-value=5.2e-16  Score=127.65  Aligned_cols=139  Identities=24%  Similarity=0.356  Sum_probs=85.0

Q ss_pred             CCcEEEcccCcccCcCCccccCCCCccEEeccCCcccCCCcHHHHHHHHHHHhh--cC----CcccccCCCCCCcEEEcc
Q 039561           25 SLESLHLHRNHLSGAIPLSLQNGTHFEVLDLRENAFIRDVPKWIKKSLLALFMM--KG----KAFEYSTNLNVLRVIELS   98 (190)
Q Consensus        25 ~L~~l~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~~~~~l~~~--~~----~~~~~~~~~~~L~~L~l~   98 (190)
                      +++.|++++|.+++ +|..+  .++|++|++++|.+. .+| ..   +++|..+  .+    .+|. +..  +|++|+++
T Consensus        60 ~L~~L~Ls~n~L~~-lp~~l--~~~L~~L~Ls~N~l~-~ip-~~---l~~L~~L~Ls~N~l~~ip~-l~~--~L~~L~Ls  128 (571)
T 3cvr_A           60 QFSELQLNRLNLSS-LPDNL--PPQITVLEITQNALI-SLP-EL---PASLEYLDACDNRLSTLPE-LPA--SLKHLDVD  128 (571)
T ss_dssp             TCSEEECCSSCCSC-CCSCC--CTTCSEEECCSSCCS-CCC-CC---CTTCCEEECCSSCCSCCCC-CCT--TCCEEECC
T ss_pred             CccEEEeCCCCCCc-cCHhH--cCCCCEEECcCCCCc-ccc-cc---cCCCCEEEccCCCCCCcch-hhc--CCCEEECC
Confidence            89999999999994 77765  378999999999977 567 22   2222111  11    1222 222  56666666


Q ss_pred             CCeecccCCccCCCCCCCcEEEcccCcceeccCccccCCCCCCEEeCCCCc------------eEEeecccccccCCccc
Q 039561           99 KNNFLGEIAKGVTNPGASQTLNLSQNSFSRTIPESIGSMKSLESIDFSANH------------YLNLSNNNLTGEIPSGI  166 (190)
Q Consensus        99 ~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~l~l~~N~------------~l~l~~N~l~g~~p~~~  166 (190)
                      +|.+++ +|.   .+++|+.|++++|.+++ +|.   .+++|+.|++++|.            +|++++|.|+ .+|. +
T Consensus       129 ~N~l~~-lp~---~l~~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~L~~lp~l~~~L~~L~Ls~N~L~-~lp~-~  198 (571)
T 3cvr_A          129 NNQLTM-LPE---LPALLEYINADNNQLTM-LPE---LPTSLEVLSVRNNQLTFLPELPESLEALDVSTNLLE-SLPA-V  198 (571)
T ss_dssp             SSCCSC-CCC---CCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSCCCCCCTTCCEEECCSSCCS-SCCC-C
T ss_pred             CCcCCC-CCC---cCccccEEeCCCCccCc-CCC---cCCCcCEEECCCCCCCCcchhhCCCCEEECcCCCCC-chhh-H
Confidence            666653 444   45666666666666663 444   34566666666664            5666666666 5665 3


Q ss_pred             ccccc-------ccccccCCcccCCC
Q 039561          167 QLQGF-------HQSRFAGSELCGAP  185 (190)
Q Consensus       167 ~~~~l-------~~~~~~~n~l~~~~  185 (190)
                      . .++       +.+++++|.++..|
T Consensus       199 ~-~~L~~~~~~L~~L~Ls~N~l~~lp  223 (571)
T 3cvr_A          199 P-VRNHHSEETEIFFRCRENRITHIP  223 (571)
T ss_dssp             C---------CCEEEECCSSCCCCCC
T ss_pred             H-HhhhcccccceEEecCCCcceecC
Confidence            2 155       66666666666555

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=99.68  E-value=6.3e-17  Score=113.14  Aligned_cols=137  Identities=23%  Similarity=0.199  Sum_probs=112.6

Q ss_pred             CCCCCcEEEcccCccc-CcCCccccCCCCccEEeccCCcccCCCcHHHHHHHHHHHhhcCCcccccCCCCCCcEEEccCC
Q 039561           22 ALSSLESLHLHRNHLS-GAIPLSLQNGTHFEVLDLRENAFIRDVPKWIKKSLLALFMMKGKAFEYSTNLNVLRVIELSKN  100 (190)
Q Consensus        22 ~l~~L~~l~l~~n~~~-~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~~~~~l~~~~~~~~~~~~~~~~L~~L~l~~n  100 (190)
                      ..++|++|++++|.++ +.+|..+..+++|++|++++|.+.+.  .                  .+..+++|++|++++|
T Consensus        22 ~~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~--~------------------~~~~l~~L~~L~Ls~N   81 (168)
T 2ell_A           22 TPAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--S------------------NLPKLPKLKKLELSEN   81 (168)
T ss_dssp             CTTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC--S------------------SCCCCSSCCEEEEESC
T ss_pred             CcccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh--h------------------hhccCCCCCEEECcCC
Confidence            4588999999999998 67888888899999999999997653  2                  3345899999999999


Q ss_pred             eecccCCccCCCCCCCcEEEcccCcceecc-CccccCCCCCCEEeCCCCceEEeecccccccCCc----cc-cccccccc
Q 039561          101 NFLGEIAKGVTNPGASQTLNLSQNSFSRTI-PESIGSMKSLESIDFSANHYLNLSNNNLTGEIPS----GI-QLQGFHQS  174 (190)
Q Consensus       101 ~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~-p~~l~~l~~L~~l~l~~N~~l~l~~N~l~g~~p~----~~-~~~~l~~~  174 (190)
                      .+.+.+|..+..+++|++|++++|.+++.. +..+..+++|+.        |++++|.+++ +|.    .+ .+.+++.+
T Consensus        82 ~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~l~~l~~L~~--------L~l~~N~l~~-~~~~~~~~~~~l~~L~~L  152 (168)
T 2ell_A           82 RIFGGLDMLAEKLPNLTHLNLSGNKLKDISTLEPLKKLECLKS--------LDLFNCEVTN-LNDYRESVFKLLPQLTYL  152 (168)
T ss_dssp             CCCSCCCHHHHHCTTCCEEECBSSSCCSSGGGGGGSSCSCCCE--------EECCSSGGGT-STTHHHHHHTTCSSCCEE
T ss_pred             cCchHHHHHHhhCCCCCEEeccCCccCcchhHHHHhcCCCCCE--------EEeeCCcCcc-hHHHHHHHHHhCccCcEe
Confidence            999767887778999999999999998532 267888899985        5588888984 454    34 78999999


Q ss_pred             cccCCcccCCCCC
Q 039561          175 RFAGSELCGAPFP  187 (190)
Q Consensus       175 ~~~~n~l~~~~~~  187 (190)
                      ++.+|.....|..
T Consensus       153 ~l~~n~~~~~~~~  165 (168)
T 2ell_A          153 DGYDREDQEAPDS  165 (168)
T ss_dssp             TTEETTSCBCCSS
T ss_pred             cCCCCChhhcccc
Confidence            9999987777654

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=99.67  E-value=1.4e-16  Score=112.24  Aligned_cols=123  Identities=14%  Similarity=0.123  Sum_probs=83.4

Q ss_pred             CcceeccCCccccCCCcccCCCC-CCcEEEcccCcccCcCCccccCCCCccEEeccCCcccCCCcHHHHHHHHHHHhhcC
Q 039561            2 LQQGLKIQHKFSRSFPTSTGALS-SLESLHLHRNHLSGAIPLSLQNGTHFEVLDLRENAFIRDVPKWIKKSLLALFMMKG   80 (190)
Q Consensus         2 L~~L~l~~n~l~~~~p~~l~~l~-~L~~l~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~~~~~l~~~~~   80 (190)
                      |++|++++|.++. ++ .+..+. +|++|++++|.+++ + ..+..+++|++|++++|.+.+..+..+..          
T Consensus        21 L~~L~l~~n~l~~-i~-~~~~~~~~L~~L~Ls~N~l~~-~-~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~----------   86 (176)
T 1a9n_A           21 DRELDLRGYKIPV-IE-NLGATLDQFDAIDFSDNEIRK-L-DGFPLLRRLKTLLVNNNRICRIGEGLDQA----------   86 (176)
T ss_dssp             CEEEECTTSCCCS-CC-CGGGGTTCCSEEECCSSCCCE-E-CCCCCCSSCCEEECCSSCCCEECSCHHHH----------
T ss_pred             ceEEEeeCCCCch-hH-HhhhcCCCCCEEECCCCCCCc-c-cccccCCCCCEEECCCCcccccCcchhhc----------
Confidence            5677788887775 44 344443 78888888888773 3 45667777888888888766433333344          


Q ss_pred             CcccccCCCCCCcEEEccCCeecccCCc--cCCCCCCCcEEEcccCcceeccCcc----ccCCCCCCEEeCCCC
Q 039561           81 KAFEYSTNLNVLRVIELSKNNFLGEIAK--GVTNPGASQTLNLSQNSFSRTIPES----IGSMKSLESIDFSAN  148 (190)
Q Consensus        81 ~~~~~~~~~~~L~~L~l~~n~l~~~~p~--~~~~l~~L~~L~l~~n~l~~~~p~~----l~~l~~L~~l~l~~N  148 (190)
                              +++|++|++++|.+. .+|.  .+..+++|+.|++++|.++ .+|..    +..+++|+.+|++.|
T Consensus        87 --------l~~L~~L~L~~N~i~-~~~~~~~l~~l~~L~~L~l~~N~i~-~~~~~~~~~~~~l~~L~~Ld~~~n  150 (176)
T 1a9n_A           87 --------LPDLTELILTNNSLV-ELGDLDPLASLKSLTYLCILRNPVT-NKKHYRLYVIYKVPQVRVLDFQKV  150 (176)
T ss_dssp             --------CTTCCEEECCSCCCC-CGGGGGGGGGCTTCCEEECCSSGGG-GSTTHHHHHHHHCTTCSEETTEEC
T ss_pred             --------CCCCCEEECCCCcCC-cchhhHhhhcCCCCCEEEecCCCCC-CcHhHHHHHHHHCCccceeCCCcC
Confidence                    777888888888775 4554  6677778888888888776 55553    677777776664444

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=99.67  E-value=6.3e-16  Score=115.77  Aligned_cols=153  Identities=18%  Similarity=0.241  Sum_probs=114.2

Q ss_pred             cceeccCCccccCCCcccCCCCCCcEEEcccCcccCcCCccccCCCCccEEeccCCcccCCCcHHHHHHHHHHHhhcCCc
Q 039561            3 QQGLKIQHKFSRSFPTSTGALSSLESLHLHRNHLSGAIPLSLQNGTHFEVLDLRENAFIRDVPKWIKKSLLALFMMKGKA   82 (190)
Q Consensus         3 ~~L~l~~n~l~~~~p~~l~~l~~L~~l~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~~~~~l~~~~~~~   82 (190)
                      +.++++++.+++ ++ .+..+++|++|++++|.++ .++ .+..+++|+.|++++|.+.+. +. +..            
T Consensus        22 ~~l~l~~~~i~~-~~-~~~~l~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~L~~N~i~~~-~~-l~~------------   83 (263)
T 1xeu_A           22 VKQNLGKQSVTD-LV-SQKELSGVQNFNGDNSNIQ-SLA-GMQFFTNLKELHLSHNQISDL-SP-LKD------------   83 (263)
T ss_dssp             HHHHHTCSCTTS-EE-CHHHHTTCSEEECTTSCCC-CCT-TGGGCTTCCEEECCSSCCCCC-GG-GTT------------
T ss_pred             HHHHhcCCCccc-cc-chhhcCcCcEEECcCCCcc-cch-HHhhCCCCCEEECCCCccCCC-hh-hcc------------
Confidence            445677777776 33 5677888888999888888 566 577788888999988887653 33 433            


Q ss_pred             ccccCCCCCCcEEEccCCeecccCCccCCCCCCCcEEEcccCcceeccCccccCCCCCCEEeCCCCc-------------
Q 039561           83 FEYSTNLNVLRVIELSKNNFLGEIAKGVTNPGASQTLNLSQNSFSRTIPESIGSMKSLESIDFSANH-------------  149 (190)
Q Consensus        83 ~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~l~l~~N~-------------  149 (190)
                            +++|++|++++|++++ +|.. .. ++|+.|++++|.+++ ++ .+..+++|+.|++++|+             
T Consensus        84 ------l~~L~~L~L~~N~l~~-l~~~-~~-~~L~~L~L~~N~l~~-~~-~l~~l~~L~~L~Ls~N~i~~~~~l~~l~~L  152 (263)
T 1xeu_A           84 ------LTKLEELSVNRNRLKN-LNGI-PS-ACLSRLFLDNNELRD-TD-SLIHLKNLEILSIRNNKLKSIVMLGFLSKL  152 (263)
T ss_dssp             ------CSSCCEEECCSSCCSC-CTTC-CC-SSCCEEECCSSCCSB-SG-GGTTCTTCCEEECTTSCCCBCGGGGGCTTC
T ss_pred             ------CCCCCEEECCCCccCC-cCcc-cc-CcccEEEccCCccCC-Ch-hhcCcccccEEECCCCcCCCChHHccCCCC
Confidence                  8888889998888874 4543 33 888889998888874 33 58888888888888886             


Q ss_pred             -eEEeecccccccCCccccccccccccccCCcccCCC
Q 039561          150 -YLNLSNNNLTGEIPSGIQLQGFHQSRFAGSELCGAP  185 (190)
Q Consensus       150 -~l~l~~N~l~g~~p~~~~~~~l~~~~~~~n~l~~~~  185 (190)
                       +|++++|.+++. +....+.+++.+.+++|.+++.|
T Consensus       153 ~~L~L~~N~i~~~-~~l~~l~~L~~L~l~~N~~~~~~  188 (263)
T 1xeu_A          153 EVLDLHGNEITNT-GGLTRLKKVNWIDLTGQKCVNEP  188 (263)
T ss_dssp             CEEECTTSCCCBC-TTSTTCCCCCEEEEEEEEEECCC
T ss_pred             CEEECCCCcCcch-HHhccCCCCCEEeCCCCcccCCc
Confidence             788888888854 44447788888888888666554

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=99.67  E-value=9.2e-18  Score=132.03  Aligned_cols=183  Identities=17%  Similarity=0.189  Sum_probs=124.0

Q ss_pred             CCcceeccCCccccCC----CcccCCCCCCcEEEcccCcc---cCcCCccc-------cCCCCccEEeccCCcccCCCcH
Q 039561            1 MLQQGLKIQHKFSRSF----PTSTGALSSLESLHLHRNHL---SGAIPLSL-------QNGTHFEVLDLRENAFIRDVPK   66 (190)
Q Consensus         1 ~L~~L~l~~n~l~~~~----p~~l~~l~~L~~l~l~~n~~---~~~~~~~~-------~~l~~L~~L~l~~n~~~~~~p~   66 (190)
                      .|++|++++|.++...    +..+..+++|++|++++|.+   ++.+|..+       ..+++|++|++++|.+......
T Consensus        33 ~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~  112 (386)
T 2ca6_A           33 SVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQE  112 (386)
T ss_dssp             CCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCCCTTTHH
T ss_pred             CccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCCcCCHHHHH
Confidence            3788999999998753    34477899999999999644   34445444       6789999999999998774333


Q ss_pred             HHHHHHH---HHHhh--cCC-c--------ccccCCC---------CCCcEEEccCCeec-ccCC---ccCCCCCCCcEE
Q 039561           67 WIKKSLL---ALFMM--KGK-A--------FEYSTNL---------NVLRVIELSKNNFL-GEIA---KGVTNPGASQTL  119 (190)
Q Consensus        67 ~~~~~~~---~l~~~--~~~-~--------~~~~~~~---------~~L~~L~l~~n~l~-~~~p---~~~~~l~~L~~L  119 (190)
                      .+...+.   .|..+  ... +        +..+..+         ++|++|++++|+++ +.++   ..+..++.|+.|
T Consensus       113 ~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L  192 (386)
T 2ca6_A          113 PLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTV  192 (386)
T ss_dssp             HHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHHHCTTCCEE
T ss_pred             HHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHHHHhCCCcCEE
Confidence            3322222   23222  111 1        1112222         78888888888886 3334   345567788888


Q ss_pred             EcccCccee-----ccCccccCCCCCCEEeCCCCc--------------------eEEeeccccccc----CCccc-c--
Q 039561          120 NLSQNSFSR-----TIPESIGSMKSLESIDFSANH--------------------YLNLSNNNLTGE----IPSGI-Q--  167 (190)
Q Consensus       120 ~l~~n~l~~-----~~p~~l~~l~~L~~l~l~~N~--------------------~l~l~~N~l~g~----~p~~~-~--  167 (190)
                      ++++|.++.     ..+..+..+++|+.|++++|.                    +|++++|.+++.    +|..+ .  
T Consensus       193 ~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~  272 (386)
T 2ca6_A          193 KMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLE  272 (386)
T ss_dssp             ECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCS
T ss_pred             ECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCCchhhHHHHHHHHhhcc
Confidence            888888872     344477788888888888886                    788888888755    34443 2  


Q ss_pred             ccccccccccCCcccC
Q 039561          168 LQGFHQSRFAGSELCG  183 (190)
Q Consensus       168 ~~~l~~~~~~~n~l~~  183 (190)
                      ..+++.+++++|.+++
T Consensus       273 ~~~L~~L~L~~n~i~~  288 (386)
T 2ca6_A          273 NIGLQTLRLQYNEIEL  288 (386)
T ss_dssp             SCCCCEEECCSSCCBH
T ss_pred             CCCeEEEECcCCcCCH
Confidence            6778888888887664

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=99.66  E-value=5.6e-16  Score=128.42  Aligned_cols=133  Identities=20%  Similarity=0.278  Sum_probs=104.2

Q ss_pred             CCcceeccCCccccCCCcccCCCCCCcEEEcccCcccCcCCccccCCCCccEEeccCCcccCCCcHHHHHHHHHHHhhcC
Q 039561            1 MLQQGLKIQHKFSRSFPTSTGALSSLESLHLHRNHLSGAIPLSLQNGTHFEVLDLRENAFIRDVPKWIKKSLLALFMMKG   80 (190)
Q Consensus         1 ~L~~L~l~~n~l~~~~p~~l~~l~~L~~l~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~~~~~l~~~~~   80 (190)
                      .|++|++++|.+++. ++ +..+++|+.|++++|.++ .++ .+..+++|+.|++++|.+.+ ++ .+..          
T Consensus        66 ~L~~L~Ls~N~l~~~-~~-l~~l~~L~~L~Ls~N~l~-~l~-~l~~l~~L~~L~Ls~N~l~~-l~-~l~~----------  129 (605)
T 1m9s_A           66 NVTKLFLNGNKLTDI-KP-LTNLKNLGWLFLDENKIK-DLS-SLKDLKKLKSLSLEHNGISD-IN-GLVH----------  129 (605)
T ss_dssp             TCCEEECTTSCCCCC-GG-GGGCTTCCEEECCSSCCC-CCT-TSTTCTTCCEEECTTSCCCC-CG-GGGG----------
T ss_pred             CCCEEEeeCCCCCCC-hh-hccCCCCCEEECcCCCCC-CCh-hhccCCCCCEEEecCCCCCC-Cc-cccC----------
Confidence            478899999999984 43 889999999999999998 455 67889999999999999765 33 2333          


Q ss_pred             CcccccCCCCCCcEEEccCCeecccCCccCCCCCCCcEEEcccCcceeccCccccCCCCCCEEeCCCCc-----------
Q 039561           81 KAFEYSTNLNVLRVIELSKNNFLGEIAKGVTNPGASQTLNLSQNSFSRTIPESIGSMKSLESIDFSANH-----------  149 (190)
Q Consensus        81 ~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~l~l~~N~-----------  149 (190)
                              +++|+.|++++|.+.+.  ..++.++.|+.|++++|.+++..|  +..+++|+.|++++|+           
T Consensus       130 --------l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~i~~l~~l~~l~  197 (605)
T 1m9s_A          130 --------LPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHISDLRALAGLK  197 (605)
T ss_dssp             --------CTTCSEEECCSSCCCCC--GGGGSCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCBCGGGTTCT
T ss_pred             --------CCccCEEECCCCccCCc--hhhcccCCCCEEECcCCcCCCchh--hccCCCCCEEECcCCCCCCChHHccCC
Confidence                    77788888888887743  457777888888888888875444  7777888888888876           


Q ss_pred             ---eEEeeccccccc
Q 039561          150 ---YLNLSNNNLTGE  161 (190)
Q Consensus       150 ---~l~l~~N~l~g~  161 (190)
                         .|++++|.+++.
T Consensus       198 ~L~~L~L~~N~l~~~  212 (605)
T 1m9s_A          198 NLDVLELFSQECLNK  212 (605)
T ss_dssp             TCSEEECCSEEEECC
T ss_pred             CCCEEEccCCcCcCC
Confidence               788888888743

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=99.66  E-value=5.4e-18  Score=143.29  Aligned_cols=113  Identities=17%  Similarity=0.168  Sum_probs=102.1

Q ss_pred             CCcceeccCCccccCCCcccCCCCCCcEEEcccCcccCcCCccccCCCCccEEeccCCcccCCCcHHHHHHHHHHHhhcC
Q 039561            1 MLQQGLKIQHKFSRSFPTSTGALSSLESLHLHRNHLSGAIPLSLQNGTHFEVLDLRENAFIRDVPKWIKKSLLALFMMKG   80 (190)
Q Consensus         1 ~L~~L~l~~n~l~~~~p~~l~~l~~L~~l~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~~~~~l~~~~~   80 (190)
                      .|++|++++|.+.. +|..+..+++|++|++++|.++ .+|..+..+++|++|++++|.+. .+|..+..          
T Consensus       225 ~L~~L~Ls~n~l~~-l~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~----------  291 (727)
T 4b8c_D          225 LWHALDLSNLQIFN-ISANIFKYDFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLT-SLPAELGS----------  291 (727)
T ss_dssp             CCCEEECTTSCCSC-CCGGGGGCCSCSCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSCCS-SCCSSGGG----------
T ss_pred             CCcEEECCCCCCCC-CChhhcCCCCCCEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCcCC-ccChhhcC----------
Confidence            37889999999984 8888889999999999999999 89999999999999999999987 67876665          


Q ss_pred             CcccccCCCCCCcEEEccCCeecccCCccCCCCCCCcEEEcccCcceeccCcccc
Q 039561           81 KAFEYSTNLNVLRVIELSKNNFLGEIAKGVTNPGASQTLNLSQNSFSRTIPESIG  135 (190)
Q Consensus        81 ~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~l~  135 (190)
                              +++|++|+|++|.++ .+|..++.+++|+.|++++|.+++.+|..+.
T Consensus       292 --------l~~L~~L~L~~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~p~~~~  337 (727)
T 4b8c_D          292 --------CFQLKYFYFFDNMVT-TLPWEFGNLCNLQFLGVEGNPLEKQFLKILT  337 (727)
T ss_dssp             --------GTTCSEEECCSSCCC-CCCSSTTSCTTCCCEECTTSCCCSHHHHHHH
T ss_pred             --------CCCCCEEECCCCCCC-ccChhhhcCCCccEEeCCCCccCCCChHHHh
Confidence                    899999999999997 8898899999999999999999988777664

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=99.66  E-value=2.5e-17  Score=128.67  Aligned_cols=182  Identities=19%  Similarity=0.199  Sum_probs=117.7

Q ss_pred             ceeccCCccccCCCcccCCCCCCcEEEcccCcccCcCC----ccccCCC-CccEEeccCCcccCCCcHHHHHHH----HH
Q 039561            4 QGLKIQHKFSRSFPTSTGALSSLESLHLHRNHLSGAIP----LSLQNGT-HFEVLDLRENAFIRDVPKWIKKSL----LA   74 (190)
Q Consensus         4 ~L~l~~n~l~~~~p~~l~~l~~L~~l~l~~n~~~~~~~----~~~~~l~-~L~~L~l~~n~~~~~~p~~~~~~~----~~   74 (190)
                      .+.++.|.+++.+|..+...++|++|++++|.++...+    ..+..++ +|++|++++|.+.+..+..+...+    +.
T Consensus         2 ~~~ls~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~   81 (362)
T 3goz_A            2 NYKLTLHPGSNPVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPAN   81 (362)
T ss_dssp             EEECCCCTTCCHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTT
T ss_pred             ccccccccchHHHHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCC
Confidence            35788999999777766677779999999999995444    6677888 899999999999887777766522    22


Q ss_pred             HHhh--cC-----Cccc----ccCCC-CCCcEEEccCCeecccCCcc----CCC-CCCCcEEEcccCcceec----cCcc
Q 039561           75 LFMM--KG-----KAFE----YSTNL-NVLRVIELSKNNFLGEIAKG----VTN-PGASQTLNLSQNSFSRT----IPES  133 (190)
Q Consensus        75 l~~~--~~-----~~~~----~~~~~-~~L~~L~l~~n~l~~~~p~~----~~~-l~~L~~L~l~~n~l~~~----~p~~  133 (190)
                      |..+  .+     ..+.    .+..+ ++|++|++++|.+++..+..    +.. .+.|++|++++|.+++.    ++..
T Consensus        82 L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~  161 (362)
T 3goz_A           82 VTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQI  161 (362)
T ss_dssp             CCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHH
T ss_pred             ccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHH
Confidence            2221  11     1111    12223 56777777777776443332    223 25777777777777642    2333


Q ss_pred             ccCCC-CCCEEeCCCCc---------------------eEEeeccccccc----CCccc-c-ccccccccccCCcccCCC
Q 039561          134 IGSMK-SLESIDFSANH---------------------YLNLSNNNLTGE----IPSGI-Q-LQGFHQSRFAGSELCGAP  185 (190)
Q Consensus       134 l~~l~-~L~~l~l~~N~---------------------~l~l~~N~l~g~----~p~~~-~-~~~l~~~~~~~n~l~~~~  185 (190)
                      +...+ +|+.|++++|.                     +||+++|.+++.    +++.+ . ..+++.+++++|.+.+.+
T Consensus       162 l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~  241 (362)
T 3goz_A          162 LAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPS  241 (362)
T ss_dssp             HHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSCCCCCC
T ss_pred             HhcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCCCCCcHH
Confidence            34444 67777777775                     577777777642    33333 2 246777777777666544

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=99.66  E-value=1.1e-17  Score=129.05  Aligned_cols=179  Identities=16%  Similarity=0.137  Sum_probs=125.8

Q ss_pred             CCcceeccCCccccC-CCcccCCCCCCcEEEcccCcccCcCCccccCCCCccEEeccCC-cccCC-CcHHHHHHHHHHHh
Q 039561            1 MLQQGLKIQHKFSRS-FPTSTGALSSLESLHLHRNHLSGAIPLSLQNGTHFEVLDLREN-AFIRD-VPKWIKKSLLALFM   77 (190)
Q Consensus         1 ~L~~L~l~~n~l~~~-~p~~l~~l~~L~~l~l~~n~~~~~~~~~~~~l~~L~~L~l~~n-~~~~~-~p~~~~~~~~~l~~   77 (190)
                      .|++|++++|.+++. ++..+..+++|++|++++|.+++..+..+..+++|++|++++| .+.+. ++..+. .+++|..
T Consensus        94 ~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~-~~~~L~~  172 (336)
T 2ast_B           94 RVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLS-SCSRLDE  172 (336)
T ss_dssp             CCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHH-HCTTCCE
T ss_pred             CCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHh-cCCCCCE
Confidence            367888888888765 6667788888888888888887666777777888888888888 44432 222222 2333432


Q ss_pred             h--cCC-------cccccCCCC-CCcEEEccCC--eec-ccCCccCCCCCCCcEEEcccCc-ceeccCccccCCCCCCEE
Q 039561           78 M--KGK-------AFEYSTNLN-VLRVIELSKN--NFL-GEIAKGVTNPGASQTLNLSQNS-FSRTIPESIGSMKSLESI  143 (190)
Q Consensus        78 ~--~~~-------~~~~~~~~~-~L~~L~l~~n--~l~-~~~p~~~~~l~~L~~L~l~~n~-l~~~~p~~l~~l~~L~~l  143 (190)
                      +  .+.       ++..+..++ +|++|++++|  .++ +.++..+..+++|+.|++++|. +++..+..+..+++|+.|
T Consensus       173 L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L  252 (336)
T 2ast_B          173 LNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHL  252 (336)
T ss_dssp             EECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEE
T ss_pred             EcCCCCCCcChHHHHHHHHhcccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEe
Confidence            2  111       233455688 8999999998  444 3556667778999999999998 776777788889999999


Q ss_pred             eCCCCc-----------------eEEeecccccccCCcc-c-cc-cccccccccCCcccCCC
Q 039561          144 DFSANH-----------------YLNLSNNNLTGEIPSG-I-QL-QGFHQSRFAGSELCGAP  185 (190)
Q Consensus       144 ~l~~N~-----------------~l~l~~N~l~g~~p~~-~-~~-~~l~~~~~~~n~l~~~~  185 (190)
                      ++++|.                 +|++++|     +++. + .+ ..+..+.+++|.+++..
T Consensus       253 ~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~-----i~~~~~~~l~~~l~~L~l~~n~l~~~~  309 (336)
T 2ast_B          253 SLSRCYDIIPETLLELGEIPTLKTLQVFGI-----VPDGTLQLLKEALPHLQINCSHFTTIA  309 (336)
T ss_dssp             ECTTCTTCCGGGGGGGGGCTTCCEEECTTS-----SCTTCHHHHHHHSTTSEESCCCSCCTT
T ss_pred             eCCCCCCCCHHHHHHHhcCCCCCEEeccCc-----cCHHHHHHHHhhCcceEEecccCcccc
Confidence            999984                 6777777     3332 2 23 34667778888777553

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=99.65  E-value=2.2e-16  Score=122.74  Aligned_cols=180  Identities=16%  Similarity=0.095  Sum_probs=109.2

Q ss_pred             cceeccCCccccCCCcccCCCCCCcEEEcccCcccCcCCccccCCCCccEEeccCCcccCCCcHHHHHHHHHHHh---h-
Q 039561            3 QQGLKIQHKFSRSFPTSTGALSSLESLHLHRNHLSGAIPLSLQNGTHFEVLDLRENAFIRDVPKWIKKSLLALFM---M-   78 (190)
Q Consensus         3 ~~L~l~~n~l~~~~p~~l~~l~~L~~l~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~~~~~l~~---~-   78 (190)
                      ++++.++++++. +|..+  .+++++|++++|+++...+..|..+++|++|++++|.+.+.+|...+..+.++..   + 
T Consensus        12 ~~v~C~~~~Lt~-iP~~l--~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~   88 (350)
T 4ay9_X           12 RVFLCQESKVTE-IPSDL--PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEK   88 (350)
T ss_dssp             TEEEEESTTCCS-CCTTC--CTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEE
T ss_pred             CEEEecCCCCCc-cCcCc--CCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhccc
Confidence            345666777775 66555  3578888888888873333457778888888888888665555432222333211   1 


Q ss_pred             ----cCCcccccCCCCCCcEEEccCCeecccCCccCCCCCCCcEEEccc-CcceeccCccccCCC-CCCEEeCCCCc---
Q 039561           79 ----KGKAFEYSTNLNVLRVIELSKNNFLGEIAKGVTNPGASQTLNLSQ-NSFSRTIPESIGSMK-SLESIDFSANH---  149 (190)
Q Consensus        79 ----~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~-n~l~~~~p~~l~~l~-~L~~l~l~~N~---  149 (190)
                          ....++.+..+++|++|++++|++....+..+.....+..+++.+ +.+....+..+..+. .++.|++++|.   
T Consensus        89 ~N~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~~  168 (350)
T 4ay9_X           89 ANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQE  168 (350)
T ss_dssp             ETTCCEECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCCE
T ss_pred             CCcccccCchhhhhccccccccccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhccccccccC
Confidence                111245567788888888888888744444444555666666644 445533333444443 46677777775   


Q ss_pred             ------------eEEeec-ccccccCCccc--cccccccccccCCcccCCCC
Q 039561          150 ------------YLNLSN-NNLTGEIPSGI--QLQGFHQSRFAGSELCGAPF  186 (190)
Q Consensus       150 ------------~l~l~~-N~l~g~~p~~~--~~~~l~~~~~~~n~l~~~~~  186 (190)
                                  .+++++ |.++ .+|..+  .+.+++.+++++|.+...|.
T Consensus       169 i~~~~f~~~~L~~l~l~~~n~l~-~i~~~~f~~l~~L~~LdLs~N~l~~lp~  219 (350)
T 4ay9_X          169 IHNSAFNGTQLDELNLSDNNNLE-ELPNDVFHGASGPVILDISRTRIHSLPS  219 (350)
T ss_dssp             ECTTSSTTEEEEEEECTTCTTCC-CCCTTTTTTEECCSEEECTTSCCCCCCS
T ss_pred             CChhhccccchhHHhhccCCccc-CCCHHHhccCcccchhhcCCCCcCccCh
Confidence                        566654 4444 666543  67777777777777766654

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=99.65  E-value=1.6e-15  Score=108.58  Aligned_cols=123  Identities=23%  Similarity=0.312  Sum_probs=100.5

Q ss_pred             CcEEEcccCcccCcCCccccCCCCccEEeccCCcccCCCcHHHHHHHHHHHhhcCCcccccCCCCCCcEEEccCCeeccc
Q 039561           26 LESLHLHRNHLSGAIPLSLQNGTHFEVLDLRENAFIRDVPKWIKKSLLALFMMKGKAFEYSTNLNVLRVIELSKNNFLGE  105 (190)
Q Consensus        26 L~~l~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~~~~~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~  105 (190)
                      -++++++++.++ .+|..+.  +.++.|++++|.+. .+|..+..                  +++|+.|++++|.+++.
T Consensus        12 ~~~l~~~~~~l~-~ip~~~~--~~l~~L~L~~n~i~-~ip~~~~~------------------l~~L~~L~Ls~N~i~~i   69 (193)
T 2wfh_A           12 DTVVRCSNKGLK-VLPKGIP--RDVTELYLDGNQFT-LVPKELSN------------------YKHLTLIDLSNNRISTL   69 (193)
T ss_dssp             TTEEECTTSCCS-SCCSCCC--TTCCEEECCSSCCC-SCCGGGGG------------------CTTCCEEECCSSCCCCC
T ss_pred             CCEEEcCCCCCC-cCCCCCC--CCCCEEECCCCcCc-hhHHHhhc------------------ccCCCEEECCCCcCCEe
Confidence            368999999999 7886653  68999999999976 56765554                  89999999999999977


Q ss_pred             CCccCCCCCCCcEEEcccCcceeccCccccCCCCCCEEeCCCCceEEeecccccccCCc-cc-cccccccccccCC
Q 039561          106 IAKGVTNPGASQTLNLSQNSFSRTIPESIGSMKSLESIDFSANHYLNLSNNNLTGEIPS-GI-QLQGFHQSRFAGS  179 (190)
Q Consensus       106 ~p~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~l~l~~N~~l~l~~N~l~g~~p~-~~-~~~~l~~~~~~~n  179 (190)
                      .+..|..+++|+.|++++|.+++..|..|..+++|+.|+        +++|.|+ .+|. .+ .+.+++.+.+++|
T Consensus        70 ~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~--------L~~N~l~-~~~~~~~~~l~~L~~L~L~~N  136 (193)
T 2wfh_A           70 SNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLRLLS--------LHGNDIS-VVPEGAFNDLSALSHLAIGAN  136 (193)
T ss_dssp             CTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEE--------CCSSCCC-BCCTTTTTTCTTCCEEECCSS
T ss_pred             CHhHccCCCCCCEEECCCCccCEeCHHHhCCCCCCCEEE--------CCCCCCC-eeChhhhhcCccccEEEeCCC
Confidence            778899999999999999999977777899999999665        6666676 3444 33 5777777777777

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=99.63  E-value=1.5e-15  Score=107.01  Aligned_cols=113  Identities=18%  Similarity=0.118  Sum_probs=94.4

Q ss_pred             CCcceeccCCccccCCCcccCCCCCCcEEEcccCcccCcCCccccCCCCccEEeccCCcccCCCcHHHHHHHHHHHhhcC
Q 039561            1 MLQQGLKIQHKFSRSFPTSTGALSSLESLHLHRNHLSGAIPLSLQNGTHFEVLDLRENAFIRDVPKWIKKSLLALFMMKG   80 (190)
Q Consensus         1 ~L~~L~l~~n~l~~~~p~~l~~l~~L~~l~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~~~~~l~~~~~   80 (190)
                      +|++|++++|.+++..+..+..+++|++|++++|.+++..+..+..+++|++|++++|.+.+..+..+..          
T Consensus        29 ~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~----------   98 (177)
T 2o6r_A           29 SATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQSLPNGVFDK----------   98 (177)
T ss_dssp             TCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTT----------
T ss_pred             CCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCCCccccCHHHhhC----------
Confidence            4789999999999866667889999999999999999555566788999999999999987654443433          


Q ss_pred             CcccccCCCCCCcEEEccCCeecccCCccCCCCCCCcEEEcccCcceeccC
Q 039561           81 KAFEYSTNLNVLRVIELSKNNFLGEIAKGVTNPGASQTLNLSQNSFSRTIP  131 (190)
Q Consensus        81 ~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p  131 (190)
                              +++|++|++++|.+++..+..+..+++|+.|++++|.+++..|
T Consensus        99 --------l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~  141 (177)
T 2o6r_A           99 --------LTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP  141 (177)
T ss_dssp             --------CTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred             --------CcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCeeccCc
Confidence                    8999999999999985545556889999999999999986554

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=99.63  E-value=2e-16  Score=108.46  Aligned_cols=128  Identities=20%  Similarity=0.158  Sum_probs=103.3

Q ss_pred             CCCCCcEEEcccCccc-CcCCccccCCCCccEEeccCCcccCCCcHHHHHHHHHHHhhcCCcccccCCCCCCcEEEccCC
Q 039561           22 ALSSLESLHLHRNHLS-GAIPLSLQNGTHFEVLDLRENAFIRDVPKWIKKSLLALFMMKGKAFEYSTNLNVLRVIELSKN  100 (190)
Q Consensus        22 ~l~~L~~l~l~~n~~~-~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~~~~~l~~~~~~~~~~~~~~~~L~~L~l~~n  100 (190)
                      ..++++.|++++|.++ +.+|..+..+++|++|++++|.+.+.  .                  .++.+++|++|++++|
T Consensus        15 ~~~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~------------------~~~~l~~L~~L~Ls~n   74 (149)
T 2je0_A           15 TPSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--A------------------NLPKLNKLKKLELSDN   74 (149)
T ss_dssp             CGGGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--T------------------TCCCCTTCCEEECCSS
T ss_pred             CCccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--h------------------hhhcCCCCCEEECCCC
Confidence            3478999999999998 77888888999999999999997654  2                  3345899999999999


Q ss_pred             eecccCCccCCCCCCCcEEEcccCcceec-cCccccCCCCCCEEeCCCCceEEeecccccccCC---ccc-ccccccccc
Q 039561          101 NFLGEIAKGVTNPGASQTLNLSQNSFSRT-IPESIGSMKSLESIDFSANHYLNLSNNNLTGEIP---SGI-QLQGFHQSR  175 (190)
Q Consensus       101 ~l~~~~p~~~~~l~~L~~L~l~~n~l~~~-~p~~l~~l~~L~~l~l~~N~~l~l~~N~l~g~~p---~~~-~~~~l~~~~  175 (190)
                      .+.+.+|..++.+++|++|++++|.+++. .+..+..+++|+.+        ++++|.+++..+   ..+ .+.+++.++
T Consensus        75 ~i~~~~~~~~~~l~~L~~L~ls~N~i~~~~~~~~~~~l~~L~~L--------~l~~N~l~~~~~~~~~~~~~l~~L~~L~  146 (149)
T 2je0_A           75 RVSGGLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSL--------DLFNCEVTNLNDYRENVFKLLPQLTYLD  146 (149)
T ss_dssp             CCCSCTHHHHHHCTTCCEEECTTSCCCSHHHHGGGGGCTTCCEE--------ECTTCGGGGSTTHHHHHHHHCTTCCEET
T ss_pred             cccchHHHHhhhCCCCCEEECCCCcCCChHHHHHHhhCCCCCEE--------eCcCCcccchHHHHHHHHHHCCCccccc
Confidence            99976888787899999999999999853 34788899999955        578888885443   233 677777776


Q ss_pred             cc
Q 039561          176 FA  177 (190)
Q Consensus       176 ~~  177 (190)
                      ++
T Consensus       147 l~  148 (149)
T 2je0_A          147 GY  148 (149)
T ss_dssp             TB
T ss_pred             CC
Confidence            54

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=99.63  E-value=9.4e-16  Score=126.27  Aligned_cols=109  Identities=27%  Similarity=0.317  Sum_probs=80.8

Q ss_pred             CCcEEEcccCcccCcCCccccCCCCccEEeccCCcccCCCcHHHHHHHHHHHhhcCCcccccCCCCCCcEEEccCCeecc
Q 039561           25 SLESLHLHRNHLSGAIPLSLQNGTHFEVLDLRENAFIRDVPKWIKKSLLALFMMKGKAFEYSTNLNVLRVIELSKNNFLG  104 (190)
Q Consensus        25 ~L~~l~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~~~~~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~  104 (190)
                      .|++|++++|.++ .+|. +..+++|+.|++++|.+. .+|..+..                  +++|+.|++++|.+++
T Consensus       442 ~L~~L~Ls~n~l~-~lp~-~~~l~~L~~L~Ls~N~l~-~lp~~~~~------------------l~~L~~L~Ls~N~l~~  500 (567)
T 1dce_A          442 DVRVLHLAHKDLT-VLCH-LEQLLLVTHLDLSHNRLR-ALPPALAA------------------LRCLEVLQASDNALEN  500 (567)
T ss_dssp             TCSEEECTTSCCS-SCCC-GGGGTTCCEEECCSSCCC-CCCGGGGG------------------CTTCCEEECCSSCCCC
T ss_pred             CceEEEecCCCCC-CCcC-ccccccCcEeecCccccc-ccchhhhc------------------CCCCCEEECCCCCCCC
Confidence            4778888888887 4665 777888888888888866 66766654                  7788888888888874


Q ss_pred             cCCccCCCCCCCcEEEcccCcceecc-CccccCCCCCCEEeCCCCceEEeecccccccCCc
Q 039561          105 EIAKGVTNPGASQTLNLSQNSFSRTI-PESIGSMKSLESIDFSANHYLNLSNNNLTGEIPS  164 (190)
Q Consensus       105 ~~p~~~~~l~~L~~L~l~~n~l~~~~-p~~l~~l~~L~~l~l~~N~~l~l~~N~l~g~~p~  164 (190)
                       +| .++.+++|+.|++++|.+++.. |..++.+++|+.|        ++++|.|++..|.
T Consensus       501 -lp-~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L--------~L~~N~l~~~~~~  551 (567)
T 1dce_A          501 -VD-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLL--------NLQGNSLCQEEGI  551 (567)
T ss_dssp             -CG-GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEE--------ECTTSGGGGSSSC
T ss_pred             -Cc-ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEE--------EecCCcCCCCccH
Confidence             56 6778888888888888887655 7778888888744        4677777755443

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=99.63  E-value=1e-14  Score=121.14  Aligned_cols=32  Identities=25%  Similarity=0.443  Sum_probs=17.2

Q ss_pred             eEEeecccccccCCccc-cccccccccccCCccc
Q 039561          150 YLNLSNNNLTGEIPSGI-QLQGFHQSRFAGSELC  182 (190)
Q Consensus       150 ~l~l~~N~l~g~~p~~~-~~~~l~~~~~~~n~l~  182 (190)
                      +|++++|.|+ .+|..+ .+.+++.+++++|.+.
T Consensus       265 ~L~Ls~N~L~-~lp~~l~~l~~L~~L~L~~N~l~  297 (622)
T 3g06_A          265 SLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLS  297 (622)
T ss_dssp             EEECCSSCCC-SCCGGGGGSCTTCEEECCSCCCC
T ss_pred             EEeCCCCCCC-cCCHHHhhccccCEEEecCCCCC
Confidence            4555555555 455544 4555555555555443

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=99.60  E-value=8.7e-18  Score=120.70  Aligned_cols=132  Identities=18%  Similarity=0.252  Sum_probs=108.7

Q ss_pred             CcceeccCCccccCCCc------ccCCCCCCcEEEcccCcccCcCCccccCCCCccEEeccCCcccCCCcHHHHHHHHHH
Q 039561            2 LQQGLKIQHKFSRSFPT------STGALSSLESLHLHRNHLSGAIPLSLQNGTHFEVLDLRENAFIRDVPKWIKKSLLAL   75 (190)
Q Consensus         2 L~~L~l~~n~l~~~~p~------~l~~l~~L~~l~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~~~~~l   75 (190)
                      ++.++++.+.+++.+|.      .+..+++|++|++++|.++ .+| .+..+++|++|++++|.+. .+|..+..     
T Consensus        20 l~~l~l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~l~-~l~-~~~~l~~L~~L~l~~n~l~-~l~~~~~~-----   91 (198)
T 1ds9_A           20 VVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIE-KIS-SLSGMENLRILSLGRNLIK-KIENLDAV-----   91 (198)
T ss_dssp             CCCTTCSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEEES-CCC-CHHHHTTCCEEEEEEEEEC-SCSSHHHH-----
T ss_pred             ccCcchheeEeccccCcHhhhhHHHhcCCCCCEEECCCCCCc-ccc-ccccCCCCCEEECCCCCcc-cccchhhc-----
Confidence            46678888999888776      7889999999999999999 577 7888999999999999976 57776655     


Q ss_pred             HhhcCCcccccCCCCCCcEEEccCCeecccCCccCCCCCCCcEEEcccCcceeccC-ccccCCCCCCEEeCCCCceEEee
Q 039561           76 FMMKGKAFEYSTNLNVLRVIELSKNNFLGEIAKGVTNPGASQTLNLSQNSFSRTIP-ESIGSMKSLESIDFSANHYLNLS  154 (190)
Q Consensus        76 ~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p-~~l~~l~~L~~l~l~~N~~l~l~  154 (190)
                                   +++|++|++++|.+++ +| .+..+++|+.|++++|.+++..+ ..+..+++|+.        ++++
T Consensus        92 -------------~~~L~~L~L~~N~l~~-l~-~~~~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~--------L~l~  148 (198)
T 1ds9_A           92 -------------ADTLEELWISYNQIAS-LS-GIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLED--------LLLA  148 (198)
T ss_dssp             -------------HHHCSEEEEEEEECCC-HH-HHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSE--------EEEC
T ss_pred             -------------CCcCCEEECcCCcCCc-CC-ccccCCCCCEEECCCCcCCchhHHHHHhcCCCCCE--------EEec
Confidence                         6789999999999984 55 57788999999999999984322 46888888885        4578


Q ss_pred             cccccccCCc
Q 039561          155 NNNLTGEIPS  164 (190)
Q Consensus       155 ~N~l~g~~p~  164 (190)
                      +|.+++.+|.
T Consensus       149 ~N~l~~~~~~  158 (198)
T 1ds9_A          149 GNPLYNDYKE  158 (198)
T ss_dssp             SCHHHHHHHT
T ss_pred             CCcccccccc
Confidence            8888766665

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=99.60  E-value=1.8e-14  Score=119.77  Aligned_cols=142  Identities=17%  Similarity=0.220  Sum_probs=81.6

Q ss_pred             CcceeccCCccccCCCcccCCCCCCcEEEcccCcccCcCCccccCCCCccEEeccCCcccCCCcHHHHHHHHHHHhh---
Q 039561            2 LQQGLKIQHKFSRSFPTSTGALSSLESLHLHRNHLSGAIPLSLQNGTHFEVLDLRENAFIRDVPKWIKKSLLALFMM---   78 (190)
Q Consensus         2 L~~L~l~~n~l~~~~p~~l~~l~~L~~l~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~~~~~l~~~---   78 (190)
                      +++|++++|.++. +|..+.  ++|++|++++|.++ .+|.   .+++|++|++++|.+. .+|..    +.+|..+   
T Consensus        42 l~~L~ls~n~L~~-lp~~l~--~~L~~L~L~~N~l~-~lp~---~l~~L~~L~Ls~N~l~-~lp~~----l~~L~~L~Ls  109 (622)
T 3g06_A           42 NAVLNVGESGLTT-LPDCLP--AHITTLVIPDNNLT-SLPA---LPPELRTLEVSGNQLT-SLPVL----PPGLLELSIF  109 (622)
T ss_dssp             CCEEECCSSCCSC-CCSCCC--TTCSEEEECSCCCS-CCCC---CCTTCCEEEECSCCCS-CCCCC----CTTCCEEEEC
T ss_pred             CcEEEecCCCcCc-cChhhC--CCCcEEEecCCCCC-CCCC---cCCCCCEEEcCCCcCC-cCCCC----CCCCCEEECc
Confidence            4677888888874 676555  67888888888887 5664   4577888888888765 34441    1222111   


Q ss_pred             cCCcccccCCCCCCcEEEccCCeecccCCccCCCCCCCcEEEcccCcceeccCccccCCCCCCEEeCCCCc---------
Q 039561           79 KGKAFEYSTNLNVLRVIELSKNNFLGEIAKGVTNPGASQTLNLSQNSFSRTIPESIGSMKSLESIDFSANH---------  149 (190)
Q Consensus        79 ~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~l~l~~N~---------  149 (190)
                      ...+...-..+++|+.|++++|++. .+|..   +++|++|++++|.++ .+|..   .++|+.|++++|.         
T Consensus       110 ~N~l~~l~~~l~~L~~L~L~~N~l~-~lp~~---l~~L~~L~Ls~N~l~-~l~~~---~~~L~~L~L~~N~l~~l~~~~~  181 (622)
T 3g06_A          110 SNPLTHLPALPSGLCKLWIFGNQLT-SLPVL---PPGLQELSVSDNQLA-SLPAL---PSELCKLWAYNNQLTSLPMLPS  181 (622)
T ss_dssp             SCCCCCCCCCCTTCCEEECCSSCCS-CCCCC---CTTCCEEECCSSCCS-CCCCC---CTTCCEEECCSSCCSCCCCCCT
T ss_pred             CCcCCCCCCCCCCcCEEECCCCCCC-cCCCC---CCCCCEEECcCCcCC-CcCCc---cCCCCEEECCCCCCCCCcccCC
Confidence            1111000012455666666666665 34442   356677777777666 34432   3455556555554         


Q ss_pred             ---eEEeecccccccCCc
Q 039561          150 ---YLNLSNNNLTGEIPS  164 (190)
Q Consensus       150 ---~l~l~~N~l~g~~p~  164 (190)
                         +|++++|.++ .+|.
T Consensus       182 ~L~~L~Ls~N~l~-~l~~  198 (622)
T 3g06_A          182 GLQELSVSDNQLA-SLPT  198 (622)
T ss_dssp             TCCEEECCSSCCS-CCCC
T ss_pred             CCcEEECCCCCCC-CCCC
Confidence               5666666666 3444

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=99.59  E-value=6.2e-15  Score=103.38  Aligned_cols=54  Identities=20%  Similarity=0.199  Sum_probs=26.1

Q ss_pred             CCCCcEEEccCCeecccCCccCCCCCCCcEEEcccCcceeccCccccCCCCCCE
Q 039561           89 LNVLRVIELSKNNFLGEIAKGVTNPGASQTLNLSQNSFSRTIPESIGSMKSLES  142 (190)
Q Consensus        89 ~~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~  142 (190)
                      +++|++|++++|++++..+..+..+++|++|++++|.+++..+..+..+++|+.
T Consensus        53 l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~  106 (170)
T 3g39_A           53 LTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQLKSIPRGAFDNLKSLTH  106 (170)
T ss_dssp             CTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCE
T ss_pred             cccCCEEECCCCCcCccChhhccCCCCCCEEECCCCccCEeCHHHhcCCCCCCE
Confidence            445555555555554333333445555555555555555333334445555553

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=99.59  E-value=6.5e-17  Score=129.56  Aligned_cols=94  Identities=15%  Similarity=0.198  Sum_probs=56.9

Q ss_pred             CCCCcEEEccCCeecccCCccCC-----CCCCCcEEEcccCcceec----cCccccCCCCCCEEeCCCCc----------
Q 039561           89 LNVLRVIELSKNNFLGEIAKGVT-----NPGASQTLNLSQNSFSRT----IPESIGSMKSLESIDFSANH----------  149 (190)
Q Consensus        89 ~~~L~~L~l~~n~l~~~~p~~~~-----~l~~L~~L~l~~n~l~~~----~p~~l~~l~~L~~l~l~~N~----------  149 (190)
                      +++|++|++++|.+++..+..+.     ..+.|+.|++++|.+++.    ++..+..+++|+.|++++|.          
T Consensus       283 ~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~  362 (461)
T 1z7x_W          283 KESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELC  362 (461)
T ss_dssp             CTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHH
T ss_pred             CCCcceEECCCCCCchHHHHHHHHHhccCCccceeeEcCCCCCchHHHHHHHHHHhhCCCccEEEccCCccccccHHHHH
Confidence            66677777776666533222221     124666777776666643    34445556677777777665          


Q ss_pred             -----------eEEeecccccc----cCCccc-cccccccccccCCccc
Q 039561          150 -----------YLNLSNNNLTG----EIPSGI-QLQGFHQSRFAGSELC  182 (190)
Q Consensus       150 -----------~l~l~~N~l~g----~~p~~~-~~~~l~~~~~~~n~l~  182 (190)
                                 +|++++|.+++    .+|..+ ...+++.+++++|.+.
T Consensus       363 ~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~N~i~  411 (461)
T 1z7x_W          363 QGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLG  411 (461)
T ss_dssp             HHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCCCCCEEECCSSSCC
T ss_pred             HHHcCCCCceEEEECCCCCCChhhHHHHHHHHHhCCCccEEECCCCCCC
Confidence                       57777777764    455554 5667777777777554

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=99.57  E-value=2.2e-16  Score=126.50  Aligned_cols=92  Identities=14%  Similarity=0.130  Sum_probs=45.4

Q ss_pred             CCcEEEccCCeeccc----CCccCCCCCCCcEEEcccCcceecc-----CccccCCCCCCEEeCCCCc------------
Q 039561           91 VLRVIELSKNNFLGE----IAKGVTNPGASQTLNLSQNSFSRTI-----PESIGSMKSLESIDFSANH------------  149 (190)
Q Consensus        91 ~L~~L~l~~n~l~~~----~p~~~~~l~~L~~L~l~~n~l~~~~-----p~~l~~l~~L~~l~l~~N~------------  149 (190)
                      +|++|++++|.+++.    ++..+..++.|++|++++|.+++..     +..+..+++|+.|++++|.            
T Consensus       200 ~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~  279 (461)
T 1z7x_W          200 QLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRV  279 (461)
T ss_dssp             CCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHH
T ss_pred             CceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcCChHHHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHH
Confidence            455555555555431    2344444555666666666554321     1112235556666666554            


Q ss_pred             --------eEEeecccccccCCccc-c-----ccccccccccCCccc
Q 039561          150 --------YLNLSNNNLTGEIPSGI-Q-----LQGFHQSRFAGSELC  182 (190)
Q Consensus       150 --------~l~l~~N~l~g~~p~~~-~-----~~~l~~~~~~~n~l~  182 (190)
                              +|++++|.+++..+..+ .     ..+++.+++++|.+.
T Consensus       280 l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~  326 (461)
T 1z7x_W          280 LRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFT  326 (461)
T ss_dssp             HHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSCCB
T ss_pred             HhhCCCcceEECCCCCCchHHHHHHHHHhccCCccceeeEcCCCCCc
Confidence                    56666666653322222 1     135666666666544

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=99.57  E-value=1.1e-14  Score=113.28  Aligned_cols=60  Identities=12%  Similarity=0.065  Sum_probs=39.4

Q ss_pred             CcceeccCCccccCCCcccCCCCCCcEEEcccCcccCcCC-ccccCCCCccE-EeccCCccc
Q 039561            2 LQQGLKIQHKFSRSFPTSTGALSSLESLHLHRNHLSGAIP-LSLQNGTHFEV-LDLRENAFI   61 (190)
Q Consensus         2 L~~L~l~~n~l~~~~p~~l~~l~~L~~l~l~~n~~~~~~~-~~~~~l~~L~~-L~l~~n~~~   61 (190)
                      +++|++++|+++...+..|.++++|++|++++|.+.+.+| ..|..++.++. +.+..|++.
T Consensus        32 l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~l~   93 (350)
T 4ay9_X           32 AIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLL   93 (350)
T ss_dssp             CSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETTCC
T ss_pred             CCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCCccc
Confidence            6788899999887444568889999999999988754444 23444554443 334444443

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=99.57  E-value=1.4e-15  Score=125.23  Aligned_cols=120  Identities=22%  Similarity=0.187  Sum_probs=87.0

Q ss_pred             CcceeccCCccccCCCcccCCCCCCcEEEcccCcccCcCCccccCCCCccEEeccCCcccCCCcHHHHHHHHHHHhhcCC
Q 039561            2 LQQGLKIQHKFSRSFPTSTGALSSLESLHLHRNHLSGAIPLSLQNGTHFEVLDLRENAFIRDVPKWIKKSLLALFMMKGK   81 (190)
Q Consensus         2 L~~L~l~~n~l~~~~p~~l~~l~~L~~l~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~~~~~l~~~~~~   81 (190)
                      |++|++++|.+++ +|. ++.+++|++|++++|.++ .+|..+..+++|+.|++++|.+.+ +| .+..           
T Consensus       443 L~~L~Ls~n~l~~-lp~-~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~~-lp-~l~~-----------  506 (567)
T 1dce_A          443 VRVLHLAHKDLTV-LCH-LEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALEN-VD-GVAN-----------  506 (567)
T ss_dssp             CSEEECTTSCCSS-CCC-GGGGTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCC-CG-GGTT-----------
T ss_pred             ceEEEecCCCCCC-CcC-ccccccCcEeecCccccc-ccchhhhcCCCCCEEECCCCCCCC-Cc-ccCC-----------
Confidence            5677888888877 565 777888888888888887 777777788888888888888665 45 4433           


Q ss_pred             cccccCCCCCCcEEEccCCeecccC-CccCCCCCCCcEEEcccCcceeccCcc---ccCCCCCCEEe
Q 039561           82 AFEYSTNLNVLRVIELSKNNFLGEI-AKGVTNPGASQTLNLSQNSFSRTIPES---IGSMKSLESID  144 (190)
Q Consensus        82 ~~~~~~~~~~L~~L~l~~n~l~~~~-p~~~~~l~~L~~L~l~~n~l~~~~p~~---l~~l~~L~~l~  144 (190)
                             +++|+.|++++|.+++.. |..++.+++|+.|++++|.+++..|..   +..+++|+.|+
T Consensus       507 -------l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~l~~~lp~L~~L~  566 (567)
T 1dce_A          507 -------LPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSIL  566 (567)
T ss_dssp             -------CSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCTTCSEEE
T ss_pred             -------CCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCCCCccHHHHHHHHCcccCccC
Confidence                   778888888888887554 777778888888888888887443321   23366777665

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=99.57  E-value=1.5e-14  Score=101.42  Aligned_cols=108  Identities=18%  Similarity=0.125  Sum_probs=91.4

Q ss_pred             CcceeccCCccccCCCcccCCCCCCcEEEcccCcccCcCCccccCCCCccEEeccCCcccCCCcHHHHHHHHHHHhhcCC
Q 039561            2 LQQGLKIQHKFSRSFPTSTGALSSLESLHLHRNHLSGAIPLSLQNGTHFEVLDLRENAFIRDVPKWIKKSLLALFMMKGK   81 (190)
Q Consensus         2 L~~L~l~~n~l~~~~p~~l~~l~~L~~l~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~~~~~l~~~~~~   81 (190)
                      .+++++++|.++. +|..+.  +++++|++++|.+++..|..|..+++|++|++++|.+.+..+..+..           
T Consensus        11 ~~~l~~s~n~l~~-ip~~~~--~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~-----------   76 (170)
T 3g39_A           11 GTTVDCSGKSLAS-VPTGIP--TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDK-----------   76 (170)
T ss_dssp             TTEEECTTSCCSS-CCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTT-----------
T ss_pred             CCEEEeCCCCcCc-cCccCC--CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccC-----------
Confidence            4678999999987 776664  89999999999999777888999999999999999987544443333           


Q ss_pred             cccccCCCCCCcEEEccCCeecccCCccCCCCCCCcEEEcccCcceecc
Q 039561           82 AFEYSTNLNVLRVIELSKNNFLGEIAKGVTNPGASQTLNLSQNSFSRTI  130 (190)
Q Consensus        82 ~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~  130 (190)
                             +++|++|++++|++.+..+..+..+++|+.|++++|.++...
T Consensus        77 -------l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c~c  118 (170)
T 3g39_A           77 -------LTQLTQLSLNDNQLKSIPRGAFDNLKSLTHIWLLNNPWDCAC  118 (170)
T ss_dssp             -------CTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCBCTTB
T ss_pred             -------CCCCCEEECCCCccCEeCHHHhcCCCCCCEEEeCCCCCCCCc
Confidence                   899999999999999665667999999999999999998543

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=99.56  E-value=2.4e-15  Score=105.91  Aligned_cols=131  Identities=16%  Similarity=0.114  Sum_probs=102.6

Q ss_pred             ccCCCCCCcEEEcccCcccCcCCccccCCCCccEEeccCCcccCCCcHHHHHHHHHHHhhcCCcccccCCCCCCcEEEcc
Q 039561           19 STGALSSLESLHLHRNHLSGAIPLSLQNGTHFEVLDLRENAFIRDVPKWIKKSLLALFMMKGKAFEYSTNLNVLRVIELS   98 (190)
Q Consensus        19 ~l~~l~~L~~l~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~~~~~l~~~~~~~~~~~~~~~~L~~L~l~   98 (190)
                      .+.+.++|++|++++|.++ .++......++|++|++++|.+.+.  .                  .+..+++|++|+++
T Consensus        14 ~~~~~~~L~~L~l~~n~l~-~i~~~~~~~~~L~~L~Ls~N~l~~~--~------------------~l~~l~~L~~L~Ls   72 (176)
T 1a9n_A           14 QYTNAVRDRELDLRGYKIP-VIENLGATLDQFDAIDFSDNEIRKL--D------------------GFPLLRRLKTLLVN   72 (176)
T ss_dssp             EEECTTSCEEEECTTSCCC-SCCCGGGGTTCCSEEECCSSCCCEE--C------------------CCCCCSSCCEEECC
T ss_pred             hcCCcCCceEEEeeCCCCc-hhHHhhhcCCCCCEEECCCCCCCcc--c------------------ccccCCCCCEEECC
Confidence            4667899999999999999 5664333344999999999997653  2                  23448999999999


Q ss_pred             CCeecccCCccCCCCCCCcEEEcccCcceeccCc--cccCCCCCCEEeCCCCceEEeecccccccCCcc----c-ccccc
Q 039561           99 KNNFLGEIAKGVTNPGASQTLNLSQNSFSRTIPE--SIGSMKSLESIDFSANHYLNLSNNNLTGEIPSG----I-QLQGF  171 (190)
Q Consensus        99 ~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~--~l~~l~~L~~l~l~~N~~l~l~~N~l~g~~p~~----~-~~~~l  171 (190)
                      +|.+++..+..+..+++|++|++++|.++ .+|.  .+..+++|+.++        +++|.++ .+|..    + .+.++
T Consensus        73 ~N~l~~~~~~~~~~l~~L~~L~L~~N~i~-~~~~~~~l~~l~~L~~L~--------l~~N~i~-~~~~~~~~~~~~l~~L  142 (176)
T 1a9n_A           73 NNRICRIGEGLDQALPDLTELILTNNSLV-ELGDLDPLASLKSLTYLC--------ILRNPVT-NKKHYRLYVIYKVPQV  142 (176)
T ss_dssp             SSCCCEECSCHHHHCTTCCEEECCSCCCC-CGGGGGGGGGCTTCCEEE--------CCSSGGG-GSTTHHHHHHHHCTTC
T ss_pred             CCcccccCcchhhcCCCCCEEECCCCcCC-cchhhHhhhcCCCCCEEE--------ecCCCCC-CcHhHHHHHHHHCCcc
Confidence            99998543344588999999999999997 6666  788888898554        7788887 66764    3 68888


Q ss_pred             ccccccCCc
Q 039561          172 HQSRFAGSE  180 (190)
Q Consensus       172 ~~~~~~~n~  180 (190)
                      +.+++.+|.
T Consensus       143 ~~Ld~~~n~  151 (176)
T 1a9n_A          143 RVLDFQKVK  151 (176)
T ss_dssp             SEETTEECC
T ss_pred             ceeCCCcCC
Confidence            888888873

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=99.55  E-value=3.4e-14  Score=99.95  Aligned_cols=97  Identities=18%  Similarity=0.190  Sum_probs=54.6

Q ss_pred             cEEEcccCcccCcCCccccCCCCccEEeccCCcccCCCcHHHHHHHHHHHhhcCCcccccCCCCCCcEEEccCCeecccC
Q 039561           27 ESLHLHRNHLSGAIPLSLQNGTHFEVLDLRENAFIRDVPKWIKKSLLALFMMKGKAFEYSTNLNVLRVIELSKNNFLGEI  106 (190)
Q Consensus        27 ~~l~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~~~~~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~  106 (190)
                      +.+++++|.++ .+|..+.  +.+++|++++|.+.+..|..+..                  +++|++|++++|++++..
T Consensus        15 ~~l~~~~n~l~-~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~------------------l~~L~~L~Ls~N~l~~i~   73 (174)
T 2r9u_A           15 TLVNCQNIRLA-SVPAGIP--TDKQRLWLNNNQITKLEPGVFDH------------------LVNLQQLYFNSNKLTAIP   73 (174)
T ss_dssp             SEEECCSSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTT------------------CTTCCEEECCSSCCCCCC
T ss_pred             cEEEeCCCCCC-ccCCCcC--CCCcEEEeCCCCccccCHHHhcC------------------CcCCCEEECCCCCCCccC
Confidence            45666666665 5555442  55666666666655444443332                  666666666666666433


Q ss_pred             CccCCCCCCCcEEEcccCcceeccCccccCCCCCCEEe
Q 039561          107 AKGVTNPGASQTLNLSQNSFSRTIPESIGSMKSLESID  144 (190)
Q Consensus       107 p~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~l~  144 (190)
                      +..+..+++|+.|++++|.+++..+..+..+++|+.|+
T Consensus        74 ~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~  111 (174)
T 2r9u_A           74 TGVFDKLTQLTQLDLNDNHLKSIPRGAFDNLKSLTHIY  111 (174)
T ss_dssp             TTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEE
T ss_pred             hhHhCCcchhhEEECCCCccceeCHHHhccccCCCEEE
Confidence            33445666666666666666643333466666666444

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=99.55  E-value=2.9e-14  Score=100.33  Aligned_cols=105  Identities=13%  Similarity=0.139  Sum_probs=88.3

Q ss_pred             cceeccCCccccCCCcccCCCCCCcEEEcccCcccCcCCccccCCCCccEEeccCCcccCCCcHHHHHHHHHHHhhcCCc
Q 039561            3 QQGLKIQHKFSRSFPTSTGALSSLESLHLHRNHLSGAIPLSLQNGTHFEVLDLRENAFIRDVPKWIKKSLLALFMMKGKA   82 (190)
Q Consensus         3 ~~L~l~~n~l~~~~p~~l~~l~~L~~l~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~~~~~l~~~~~~~   82 (190)
                      +.+++++|.++. +|..+.  ++|++|++++|.+++..|..|..+++|++|++++|.+.+..+..+.             
T Consensus        15 ~~l~~~~n~l~~-iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~-------------   78 (174)
T 2r9u_A           15 TLVNCQNIRLAS-VPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFD-------------   78 (174)
T ss_dssp             SEEECCSSCCSS-CCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTT-------------
T ss_pred             cEEEeCCCCCCc-cCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhC-------------
Confidence            568899999976 787665  8999999999999977788899999999999999998753333333             


Q ss_pred             ccccCCCCCCcEEEccCCeecccCCccCCCCCCCcEEEcccCccee
Q 039561           83 FEYSTNLNVLRVIELSKNNFLGEIAKGVTNPGASQTLNLSQNSFSR  128 (190)
Q Consensus        83 ~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~  128 (190)
                           .+++|++|++++|++.+..+..+..+++|++|++++|.+..
T Consensus        79 -----~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~~~c  119 (174)
T 2r9u_A           79 -----KLTQLTQLDLNDNHLKSIPRGAFDNLKSLTHIYLYNNPWDC  119 (174)
T ss_dssp             -----TCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCBCT
T ss_pred             -----CcchhhEEECCCCccceeCHHHhccccCCCEEEeCCCCccc
Confidence                 38999999999999995545568999999999999999983

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=99.46  E-value=7.8e-16  Score=110.45  Aligned_cols=121  Identities=20%  Similarity=0.193  Sum_probs=100.9

Q ss_pred             CCcceeccCCccccCCCcccCCCCCCcEEEcccCcccCcCCccccCCCCccEEeccCCcccCCCcHHHHHHHHHHHhhcC
Q 039561            1 MLQQGLKIQHKFSRSFPTSTGALSSLESLHLHRNHLSGAIPLSLQNGTHFEVLDLRENAFIRDVPKWIKKSLLALFMMKG   80 (190)
Q Consensus         1 ~L~~L~l~~n~l~~~~p~~l~~l~~L~~l~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~~~~~l~~~~~   80 (190)
                      .|++|++++|.+++ +| .+..+++|++|++++|.++ .+|..+..+++|++|++++|.+.+ +| .+..          
T Consensus        49 ~L~~L~ls~n~l~~-l~-~~~~l~~L~~L~l~~n~l~-~l~~~~~~~~~L~~L~L~~N~l~~-l~-~~~~----------  113 (198)
T 1ds9_A           49 ACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIK-KIENLDAVADTLEELWISYNQIAS-LS-GIEK----------  113 (198)
T ss_dssp             TCSEEECSEEEESC-CC-CHHHHTTCCEEEEEEEEEC-SCSSHHHHHHHCSEEEEEEEECCC-HH-HHHH----------
T ss_pred             CCCEEECCCCCCcc-cc-ccccCCCCCEEECCCCCcc-cccchhhcCCcCCEEECcCCcCCc-CC-cccc----------
Confidence            37899999999998 77 8889999999999999999 788777777899999999999875 44 4544          


Q ss_pred             CcccccCCCCCCcEEEccCCeecccCC-ccCCCCCCCcEEEcccCcceeccCcc----------ccCCCCCCEEe
Q 039561           81 KAFEYSTNLNVLRVIELSKNNFLGEIA-KGVTNPGASQTLNLSQNSFSRTIPES----------IGSMKSLESID  144 (190)
Q Consensus        81 ~~~~~~~~~~~L~~L~l~~n~l~~~~p-~~~~~l~~L~~L~l~~n~l~~~~p~~----------l~~l~~L~~l~  144 (190)
                              +++|++|++++|.+.+..+ ..+..+++|++|++++|.+++.+|..          +..+++|+.+|
T Consensus       114 --------l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~l~~L~~Ld  180 (198)
T 1ds9_A          114 --------LVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD  180 (198)
T ss_dssp             --------HHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHHHHHCSSCSEEC
T ss_pred             --------CCCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCccccccccccchHHHHHHHHHhCCCcEEEC
Confidence                    7789999999999984322 46888999999999999998766653          77888888654

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=99.39  E-value=9.7e-13  Score=101.86  Aligned_cols=104  Identities=17%  Similarity=0.070  Sum_probs=80.2

Q ss_pred             ceeccCC-ccccCCCcccCCCCCCcEEEccc-CcccCcCCccccCCCCccEEeccCCcccCCCcHHHHHHHHHHHhhcCC
Q 039561            4 QGLKIQH-KFSRSFPTSTGALSSLESLHLHR-NHLSGAIPLSLQNGTHFEVLDLRENAFIRDVPKWIKKSLLALFMMKGK   81 (190)
Q Consensus         4 ~L~l~~n-~l~~~~p~~l~~l~~L~~l~l~~-n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~~~~~l~~~~~~   81 (190)
                      .++.+++ .++. +|. +..+++|++|++++ |.+++..+..|..+++|+.|++++|.+.+..|..+..           
T Consensus        12 ~v~~~~~n~l~~-ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~-----------   78 (347)
T 2ifg_A           12 GLRCTRDGALDS-LHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHF-----------   78 (347)
T ss_dssp             CEECCSSCCCTT-TTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGS-----------
T ss_pred             EEEcCCCCCCCc-cCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcC-----------
Confidence            4677777 7776 777 88888999999985 8888655577888899999999999887766655544           


Q ss_pred             cccccCCCCCCcEEEccCCeecccCCccCCCCCCCcEEEcccCccee
Q 039561           82 AFEYSTNLNVLRVIELSKNNFLGEIAKGVTNPGASQTLNLSQNSFSR  128 (190)
Q Consensus        82 ~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~  128 (190)
                             +++|+.|+|++|++++..+..+..+. |+.|++++|.+..
T Consensus        79 -------l~~L~~L~l~~N~l~~~~~~~~~~~~-L~~l~l~~N~~~c  117 (347)
T 2ifg_A           79 -------TPRLSRLNLSFNALESLSWKTVQGLS-LQELVLSGNPLHC  117 (347)
T ss_dssp             -------CSCCCEEECCSSCCSCCCSTTTCSCC-CCEEECCSSCCCC
T ss_pred             -------CcCCCEEeCCCCccceeCHHHcccCC-ceEEEeeCCCccC
Confidence                   88899999999998844444455444 8899999888763

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=99.36  E-value=1.4e-12  Score=101.04  Aligned_cols=102  Identities=17%  Similarity=0.188  Sum_probs=83.6

Q ss_pred             cEEEcccC-cccCcCCccccCCCCccEEeccC-CcccCCCcHHHHHHHHHHHhhcCCcccccCCCCCCcEEEccCCeecc
Q 039561           27 ESLHLHRN-HLSGAIPLSLQNGTHFEVLDLRE-NAFIRDVPKWIKKSLLALFMMKGKAFEYSTNLNVLRVIELSKNNFLG  104 (190)
Q Consensus        27 ~~l~l~~n-~~~~~~~~~~~~l~~L~~L~l~~-n~~~~~~p~~~~~~~~~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~  104 (190)
                      ..++++++ .++ .+|. +..+++|+.|++++ |.+.+..+..+.                  ++++|++|+|++|++++
T Consensus        11 ~~v~~~~~n~l~-~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~------------------~l~~L~~L~l~~N~l~~   70 (347)
T 2ifg_A           11 SGLRCTRDGALD-SLHH-LPGAENLTELYIENQQHLQHLELRDLR------------------GLGELRNLTIVKSGLRF   70 (347)
T ss_dssp             SCEECCSSCCCT-TTTT-SCSCSCCSEEECCSCSSCCEECGGGSC------------------SCCCCSEEECCSSCCCE
T ss_pred             CEEEcCCCCCCC-ccCC-CCCCCCeeEEEccCCCCCCCcChhHhc------------------cccCCCEEECCCCccce
Confidence            45788888 898 6888 98999999999996 887765445444                  49999999999999998


Q ss_pred             cCCccCCCCCCCcEEEcccCcceeccCccccCCCCCCEEeCCCCc
Q 039561          105 EIAKGVTNPGASQTLNLSQNSFSRTIPESIGSMKSLESIDFSANH  149 (190)
Q Consensus       105 ~~p~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~l~l~~N~  149 (190)
                      ..|..|..+++|+.|+|++|.|++..+..+..++ |+.|++.+|.
T Consensus        71 ~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~-L~~l~l~~N~  114 (347)
T 2ifg_A           71 VAPDAFHFTPRLSRLNLSFNALESLSWKTVQGLS-LQELVLSGNP  114 (347)
T ss_dssp             ECTTGGGSCSCCCEEECCSSCCSCCCSTTTCSCC-CCEEECCSSC
T ss_pred             eCHHHhcCCcCCCEEeCCCCccceeCHHHcccCC-ceEEEeeCCC
Confidence            8888899999999999999999955555555555 8887777665

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=99.27  E-value=1.3e-13  Score=108.14  Aligned_cols=135  Identities=16%  Similarity=0.170  Sum_probs=87.0

Q ss_pred             CcceeccCCccccCCCcccC-----CCCCCcEEEcccCcccCcCCccc-cCCCCccEEeccCCcccCCCcHHHHHHHHHH
Q 039561            2 LQQGLKIQHKFSRSFPTSTG-----ALSSLESLHLHRNHLSGAIPLSL-QNGTHFEVLDLRENAFIRDVPKWIKKSLLAL   75 (190)
Q Consensus         2 L~~L~l~~n~l~~~~p~~l~-----~l~~L~~l~l~~n~~~~~~~~~~-~~l~~L~~L~l~~n~~~~~~p~~~~~~~~~l   75 (190)
                      |++|++++|.++......+.     ..++|++|++++|.++......+ ..+++|+.|++++|.+.......+...+.  
T Consensus        74 L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L~--  151 (372)
T 3un9_A           74 LRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLLL--  151 (372)
T ss_dssp             CCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHHH--
T ss_pred             CCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHHH--
Confidence            67888888888754322222     23688899999998863222222 23457889999998876544444433111  


Q ss_pred             HhhcCCcccccCCCCCCcEEEccCCeeccc----CCccCCCCCCCcEEEcccCcceec----cCccccCCCCCCEEeCCC
Q 039561           76 FMMKGKAFEYSTNLNVLRVIELSKNNFLGE----IAKGVTNPGASQTLNLSQNSFSRT----IPESIGSMKSLESIDFSA  147 (190)
Q Consensus        76 ~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~----~p~~~~~l~~L~~L~l~~n~l~~~----~p~~l~~l~~L~~l~l~~  147 (190)
                                 ...+.|++|++++|.++..    ++..+..++.|++|++++|.+++.    ++..+...++|+.|++++
T Consensus       152 -----------~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~  220 (372)
T 3un9_A          152 -----------HDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAY  220 (372)
T ss_dssp             -----------STTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCS
T ss_pred             -----------hcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCC
Confidence                       1246788888888888642    344446677888888888887642    244566677888777777


Q ss_pred             Cc
Q 039561          148 NH  149 (190)
Q Consensus       148 N~  149 (190)
                      |.
T Consensus       221 N~  222 (372)
T 3un9_A          221 NG  222 (372)
T ss_dssp             SC
T ss_pred             CC
Confidence            75

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=99.15  E-value=1.2e-12  Score=102.56  Aligned_cols=135  Identities=16%  Similarity=0.126  Sum_probs=95.2

Q ss_pred             CCcceeccCCccccCCCcccC-CCCCCcEEEcccCcccCcCCccc-----cCCCCccEEeccCCcccCCCcHHHHHHHHH
Q 039561            1 MLQQGLKIQHKFSRSFPTSTG-ALSSLESLHLHRNHLSGAIPLSL-----QNGTHFEVLDLRENAFIRDVPKWIKKSLLA   74 (190)
Q Consensus         1 ~L~~L~l~~n~l~~~~p~~l~-~l~~L~~l~l~~n~~~~~~~~~~-----~~l~~L~~L~l~~n~~~~~~p~~~~~~~~~   74 (190)
                      .|++|++++|.++......+. .+++|++|++++|.++..-...+     ...+.|+.|++++|.+.......+...+  
T Consensus       102 ~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L--  179 (372)
T 3un9_A          102 ALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLLLHDQCQITTLRLSNNPLTAAGVAVLMEGL--  179 (372)
T ss_dssp             CEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHHHSTTCCCCEEECCSSCCHHHHHHHHHHHH--
T ss_pred             CceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHHHhcCCccceeeCCCCCCChHHHHHHHHHH--
Confidence            367899999998754322222 35789999999999973322222     2467899999999997653333333211  


Q ss_pred             HHhhcCCcccccCCCCCCcEEEccCCeeccc----CCccCCCCCCCcEEEcccCcceec----cCccccCCCCCCEEeCC
Q 039561           75 LFMMKGKAFEYSTNLNVLRVIELSKNNFLGE----IAKGVTNPGASQTLNLSQNSFSRT----IPESIGSMKSLESIDFS  146 (190)
Q Consensus        75 l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~----~p~~~~~l~~L~~L~l~~n~l~~~----~p~~l~~l~~L~~l~l~  146 (190)
                                  ...++|++|++++|.+++.    ++..+...+.|+.|++++|.+++.    +...+...++|+.|+++
T Consensus       180 ------------~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~l~~~L~~~~~L~~L~Ls  247 (372)
T 3un9_A          180 ------------AGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALALARAAREHPSLELLHLY  247 (372)
T ss_dssp             ------------HTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHHHHHHHHHCSSCCEEECT
T ss_pred             ------------hcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHHHHHHHHhCCCCCEEecc
Confidence                        2378899999999999743    355667778999999999999853    33445567889977766


Q ss_pred             CCc
Q 039561          147 ANH  149 (190)
Q Consensus       147 ~N~  149 (190)
                      +|.
T Consensus       248 ~N~  250 (372)
T 3un9_A          248 FNE  250 (372)
T ss_dssp             TSS
T ss_pred             CCC
Confidence            665

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=99.08  E-value=5.5e-11  Score=97.91  Aligned_cols=97  Identities=12%  Similarity=-0.026  Sum_probs=54.5

Q ss_pred             ccCCCCCCcEEEccCCeecccCCccCCCCCCCcEEEcccCcceeccC-ccccCCCCCCEEeCCCCc--------------
Q 039561           85 YSTNLNVLRVIELSKNNFLGEIAKGVTNPGASQTLNLSQNSFSRTIP-ESIGSMKSLESIDFSANH--------------  149 (190)
Q Consensus        85 ~~~~~~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p-~~l~~l~~L~~l~l~~N~--------------  149 (190)
                      .+..+++|+.++++++.. +.+|..+..+++|+.|++++|.+++... ..+..+++|+.|+++++-              
T Consensus       265 ~l~~~~~L~~L~l~~~~~-~~l~~~~~~~~~L~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~  343 (592)
T 3ogk_B          265 NLVFPRKLCRLGLSYMGP-NEMPILFPFAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLETRNVIGDRGLEVLAQYCKQ  343 (592)
T ss_dssp             CCCCCTTCCEEEETTCCT-TTGGGGGGGGGGCCEEEETTCCCCHHHHHHHHTTCTTCCEEEEEGGGHHHHHHHHHHHCTT
T ss_pred             HhhccccccccCccccch-hHHHHHHhhcCCCcEEecCCCcCCHHHHHHHHHhCcCCCEEeccCccCHHHHHHHHHhCCC
Confidence            334455555555555432 2455556666777777777777654333 335677777777776332              


Q ss_pred             --eEEee-----------cccccccCCcc-c-cccccccccccCCccc
Q 039561          150 --YLNLS-----------NNNLTGEIPSG-I-QLQGFHQSRFAGSELC  182 (190)
Q Consensus       150 --~l~l~-----------~N~l~g~~p~~-~-~~~~l~~~~~~~n~l~  182 (190)
                        +|+++           .|.+++..... . .+.+++.+.+..|.+.
T Consensus       344 L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~l~  391 (592)
T 3ogk_B          344 LKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSDIT  391 (592)
T ss_dssp             CCEEEEECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEEEESCCC
T ss_pred             CCEEEeecCccccccccccCccCHHHHHHHHhhCccCeEEEeecCCcc
Confidence              67777           35555332221 2 3566666666555444

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=99.06  E-value=2.4e-09  Score=82.26  Aligned_cols=85  Identities=14%  Similarity=0.157  Sum_probs=59.6

Q ss_pred             CCCCcEEEccCCeecccCCccCCCCCCCcEEEcccCcceeccCccccCCCCCC-EEeCCCCceEEeecccccccCCcc-c
Q 039561           89 LNVLRVIELSKNNFLGEIAKGVTNPGASQTLNLSQNSFSRTIPESIGSMKSLE-SIDFSANHYLNLSNNNLTGEIPSG-I  166 (190)
Q Consensus        89 ~~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~-~l~l~~N~~l~l~~N~l~g~~p~~-~  166 (190)
                      +++|+.+++++|++....+..|.++.+|+.+++++| ++...+.+|..+.+|+ .+++.++         ++ .|++. +
T Consensus       225 ~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~~---------l~-~I~~~aF  293 (329)
T 3sb4_A          225 MPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPAS---------VT-AIEFGAF  293 (329)
T ss_dssp             CTTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEEECTT---------CC-EECTTTT
T ss_pred             cCCCeEEECCCCCcceecHhhhhCCCCCCEEECCcc-cceehHHHhhCChhccEEEEEccc---------ce-EEchhhh
Confidence            678999999999888555567899999999999988 7656667899999999 8886552         22 22221 1


Q ss_pred             -cccccccccccCCcccCC
Q 039561          167 -QLQGFHQSRFAGSELCGA  184 (190)
Q Consensus       167 -~~~~l~~~~~~~n~l~~~  184 (190)
                       +..+|+.+.+.+|.+...
T Consensus       294 ~~c~~L~~l~l~~n~i~~I  312 (329)
T 3sb4_A          294 MGCDNLRYVLATGDKITTL  312 (329)
T ss_dssp             TTCTTEEEEEECSSCCCEE
T ss_pred             hCCccCCEEEeCCCccCcc
Confidence             345566666655544433

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=99.03  E-value=6.2e-11  Score=97.60  Aligned_cols=182  Identities=12%  Similarity=0.006  Sum_probs=112.4

Q ss_pred             CCcceeccCCcccc----CCCcccCCCCCCcEEEcccCcccCcCCccccCCCCccEEeccCCcccC---CCcHHHHHHHH
Q 039561            1 MLQQGLKIQHKFSR----SFPTSTGALSSLESLHLHRNHLSGAIPLSLQNGTHFEVLDLRENAFIR---DVPKWIKKSLL   73 (190)
Q Consensus         1 ~L~~L~l~~n~l~~----~~p~~l~~l~~L~~l~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~---~~p~~~~~~~~   73 (190)
                      +|++|++++|.+++    .++..+..+++|++|++++|.+. .++..+..+++|+.|+++......   ..+..+. .++
T Consensus       193 ~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~-~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~-~~~  270 (592)
T 3ogk_B          193 SLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEIL-ELVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLV-FPR  270 (592)
T ss_dssp             CCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBGG-GGHHHHHHCTTCCEEEECBCCCCTTCTTSSSCCC-CCT
T ss_pred             CccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccHH-HHHHHHhhhhHHHhhcccccccccchHHHHHHhh-ccc
Confidence            47889999988873    23444557889999999998887 466666777788888776432110   0000000 011


Q ss_pred             HHHhh------cCCcccccCCCCCCcEEEccCCeecccCC-ccCCCCCCCcEEEcccCcceeccCccccCCCCCCEEeCC
Q 039561           74 ALFMM------KGKAFEYSTNLNVLRVIELSKNNFLGEIA-KGVTNPGASQTLNLSQNSFSRTIPESIGSMKSLESIDFS  146 (190)
Q Consensus        74 ~l~~~------~~~~~~~~~~~~~L~~L~l~~n~l~~~~p-~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~l~l~  146 (190)
                      +|..+      ...++..+..+++|++|++++|.+++... ..+..+++|+.|+++++...+.++.....+++|+.|+++
T Consensus       271 ~L~~L~l~~~~~~~l~~~~~~~~~L~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~L~  350 (592)
T 3ogk_B          271 KLCRLGLSYMGPNEMPILFPFAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLETRNVIGDRGLEVLAQYCKQLKRLRIE  350 (592)
T ss_dssp             TCCEEEETTCCTTTGGGGGGGGGGCCEEEETTCCCCHHHHHHHHTTCTTCCEEEEEGGGHHHHHHHHHHHCTTCCEEEEE
T ss_pred             cccccCccccchhHHHHHHhhcCCCcEEecCCCcCCHHHHHHHHHhCcCCCEEeccCccCHHHHHHHHHhCCCCCEEEee
Confidence            11111      12234455568889999999888764333 335778888888888433333344444667788888888


Q ss_pred             C-----------Cc-----------------eEEeecccccccCCccc--ccccccccccc----CCcccCC
Q 039561          147 A-----------NH-----------------YLNLSNNNLTGEIPSGI--QLQGFHQSRFA----GSELCGA  184 (190)
Q Consensus       147 ~-----------N~-----------------~l~l~~N~l~g~~p~~~--~~~~l~~~~~~----~n~l~~~  184 (190)
                      +           |.                 +|+++.|.+++..+..+  ...+++.+.+.    .|.+++.
T Consensus       351 ~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~  422 (592)
T 3ogk_B          351 RGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERITDL  422 (592)
T ss_dssp             CCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEEEESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSC
T ss_pred             cCccccccccccCccCHHHHHHHHhhCccCeEEEeecCCccHHHHHHHHhhCCCCcEEEEeecCCCccccCc
Confidence            3           32                 68888888876655554  25667777764    3455544

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=98.95  E-value=1.1e-09  Score=84.27  Aligned_cols=167  Identities=9%  Similarity=0.014  Sum_probs=91.9

Q ss_pred             CCcceeccCCccc--------------------cCCCcccCC--------CCCCcEEEcccCcccCcCCccccCCCCccE
Q 039561            1 MLQQGLKIQHKFS--------------------RSFPTSTGA--------LSSLESLHLHRNHLSGAIPLSLQNGTHFEV   52 (190)
Q Consensus         1 ~L~~L~l~~n~l~--------------------~~~p~~l~~--------l~~L~~l~l~~n~~~~~~~~~~~~l~~L~~   52 (190)
                      +|++|++++|++.                    ......|..        +++|+.+.+++ .++..-+..|..+++|+.
T Consensus        50 ~L~~LdLs~n~i~~~~~~~~~~~~~~~~~~~~~~I~~~aF~~~~~~~~~g~~~L~~l~L~~-~i~~I~~~aF~~~~~L~~  128 (329)
T 3sb4_A           50 SLKVLDISNAEIKMYSGKAGTYPNGKFYIYMANFVPAYAFSNVVNGVTKGKQTLEKVILSE-KIKNIEDAAFKGCDNLKI  128 (329)
T ss_dssp             TCCEEEEEEEEECCEEESSSSSGGGCCEEECTTEECTTTTEEEETTEEEECTTCCC-CBCT-TCCEECTTTTTTCTTCCE
T ss_pred             cCeEEecCcceeEEecCccccccccccccccccccCHHHhcccccccccccCCCcEEECCc-cccchhHHHhhcCcccce
Confidence            4788999999887                    111234556        89999999998 777444567888999999


Q ss_pred             EeccCCcccCCCcHHHHHHHHHHHhhcCC----------c-ccccCCCCCCc-EEEc-----------------------
Q 039561           53 LDLRENAFIRDVPKWIKKSLLALFMMKGK----------A-FEYSTNLNVLR-VIEL-----------------------   97 (190)
Q Consensus        53 L~l~~n~~~~~~p~~~~~~~~~l~~~~~~----------~-~~~~~~~~~L~-~L~l-----------------------   97 (190)
                      +++++|.+....+..+.. ...+..+...          + ...+..+..++ .+.+                       
T Consensus       129 l~l~~n~i~~i~~~aF~~-~~~l~~l~~~~~~~~~~~~~i~~~~f~~~~~L~~~i~~~~~~~l~~~~~~~~~~~~~~~~l  207 (329)
T 3sb4_A          129 CQIRKKTAPNLLPEALAD-SVTAIFIPLGSSDAYRFKNRWEHFAFIEGEPLETTIQVGAMGKLEDEIMKAGLQPRDINFL  207 (329)
T ss_dssp             EEBCCSSCCEECTTSSCT-TTCEEEECTTCTHHHHTSTTTTTSCEEESCCCEEEEEECTTCCHHHHHHHTTCCGGGCSEE
T ss_pred             EEcCCCCccccchhhhcC-CCceEEecCcchhhhhccccccccccccccccceeEEecCCCcHHHHHhhcccCccccceE
Confidence            999998864322222211 1111000000          0 01111122222 1111                       


Q ss_pred             --cCCeecccCCccC-CCCCCCcEEEcccCcceeccCccccCCCCCCEEeCCCCceEEeecccccccCCccccccccc-c
Q 039561           98 --SKNNFLGEIAKGV-TNPGASQTLNLSQNSFSRTIPESIGSMKSLESIDFSANHYLNLSNNNLTGEIPSGIQLQGFH-Q  173 (190)
Q Consensus        98 --~~n~l~~~~p~~~-~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~l~l~~N~~l~l~~N~l~g~~p~~~~~~~l~-~  173 (190)
                        .++-.. .-...+ ..+++|+.+++++|.++...+..|..+++|+.+++.+| .-.+....|.       +..+|+ .
T Consensus       208 ~~~~~l~~-~~~~~l~~~~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n-i~~I~~~aF~-------~~~~L~~~  278 (329)
T 3sb4_A          208 TIEGKLDN-ADFKLIRDYMPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN-LKTIGQRVFS-------NCGRLAGT  278 (329)
T ss_dssp             EEEECCCH-HHHHHHHHHCTTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTT-------TCTTCCEE
T ss_pred             EEeeeecH-HHHHHHHHhcCCCeEEECCCCCcceecHhhhhCCCCCCEEECCcc-cceehHHHhh-------CChhccEE
Confidence              111000 000000 12689999999999998555567999999998776554 2223333332       455666 6


Q ss_pred             ccccC
Q 039561          174 SRFAG  178 (190)
Q Consensus       174 ~~~~~  178 (190)
                      +.+.+
T Consensus       279 l~l~~  283 (329)
T 3sb4_A          279 LELPA  283 (329)
T ss_dssp             EEECT
T ss_pred             EEEcc
Confidence            66655

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=98.94  E-value=2.3e-11  Score=100.13  Aligned_cols=37  Identities=22%  Similarity=0.226  Sum_probs=23.3

Q ss_pred             CCCCCcEEEcccCcccCcCCcccc-CCCCccEEeccCC
Q 039561           22 ALSSLESLHLHRNHLSGAIPLSLQ-NGTHFEVLDLREN   58 (190)
Q Consensus        22 ~l~~L~~l~l~~n~~~~~~~~~~~-~l~~L~~L~l~~n   58 (190)
                      .+++|++|++++|.+++..+..+. .+++|+.|++++|
T Consensus       103 ~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~  140 (594)
T 2p1m_B          103 SYTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSC  140 (594)
T ss_dssp             HCTTCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESC
T ss_pred             hCCCCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCc
Confidence            456777777777776644443443 4667777777776

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=98.91  E-value=5.9e-10  Score=78.94  Aligned_cols=116  Identities=12%  Similarity=0.158  Sum_probs=81.1

Q ss_pred             ccCCCCCCcEEEcccC-cccCc----CCccccCCCCccEEeccCCcccCCCcHHHHHHHHHHHhhcCCcccccCCCCCCc
Q 039561           19 STGALSSLESLHLHRN-HLSGA----IPLSLQNGTHFEVLDLRENAFIRDVPKWIKKSLLALFMMKGKAFEYSTNLNVLR   93 (190)
Q Consensus        19 ~l~~l~~L~~l~l~~n-~~~~~----~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~~~~~l~~~~~~~~~~~~~~~~L~   93 (190)
                      .+...+.|++|++++| .++..    +...+...+.|++|++++|.+.......+...++.              .+.|+
T Consensus        31 ~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~--------------n~~L~   96 (185)
T 1io0_A           31 IQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKV--------------NNTLK   96 (185)
T ss_dssp             HHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHH--------------CSSCC
T ss_pred             HHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHh--------------CCCcC
Confidence            4556788999999999 87622    33455667889999999999765444344432322              67899


Q ss_pred             EEEccCCeeccc----CCccCCCCCCCcEEEc--ccCcceec----cCccccCCCCCCEEeCCCC
Q 039561           94 VIELSKNNFLGE----IAKGVTNPGASQTLNL--SQNSFSRT----IPESIGSMKSLESIDFSAN  148 (190)
Q Consensus        94 ~L~l~~n~l~~~----~p~~~~~l~~L~~L~l--~~n~l~~~----~p~~l~~l~~L~~l~l~~N  148 (190)
                      +|++++|.+++.    +...+...+.|+.|++  ++|.++..    +...+...++|+.|++++|
T Consensus        97 ~L~L~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n  161 (185)
T 1io0_A           97 SLNVESNFISGSGILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFT  161 (185)
T ss_dssp             EEECCSSCCCHHHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCS
T ss_pred             EEECcCCcCCHHHHHHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCC
Confidence            999999999753    4556677788999999  88988753    2334555677886664443

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=98.75  E-value=1.4e-10  Score=95.49  Aligned_cols=55  Identities=9%  Similarity=-0.063  Sum_probs=35.3

Q ss_pred             CCcceeccCCccccCC-CcccCCCCCCcEEEcccCcccCc-CCccccCCCCccEEecc
Q 039561            1 MLQQGLKIQHKFSRSF-PTSTGALSSLESLHLHRNHLSGA-IPLSLQNGTHFEVLDLR   56 (190)
Q Consensus         1 ~L~~L~l~~n~l~~~~-p~~l~~l~~L~~l~l~~n~~~~~-~~~~~~~l~~L~~L~l~   56 (190)
                      .|++|++++|.++... ...+..+++|++|++++| ++.. ++.....+++|+.|++.
T Consensus       290 ~L~~L~L~~~~l~~~~l~~~~~~~~~L~~L~l~~~-~~~~~l~~l~~~~~~L~~L~L~  346 (594)
T 2p1m_B          290 RLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDY-IEDAGLEVLASTCKDLRELRVF  346 (594)
T ss_dssp             TCCEEECTTCCCCHHHHHHHHTTCTTCCEEEEEGG-GHHHHHHHHHHHCTTCCEEEEE
T ss_pred             CCCEEEccCCCCCHHHHHHHHhcCCCcCEEeCcCc-cCHHHHHHHHHhCCCCCEEEEe
Confidence            3788999998876532 223557888999999887 4311 22222346778888773

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=98.73  E-value=8.6e-10  Score=78.08  Aligned_cols=113  Identities=6%  Similarity=-0.014  Sum_probs=84.4

Q ss_pred             CCcceeccCC-ccccC----CCcccCCCCCCcEEEcccCcccCc----CCccccCCCCccEEeccCCcccCCCcHHHHHH
Q 039561            1 MLQQGLKIQH-KFSRS----FPTSTGALSSLESLHLHRNHLSGA----IPLSLQNGTHFEVLDLRENAFIRDVPKWIKKS   71 (190)
Q Consensus         1 ~L~~L~l~~n-~l~~~----~p~~l~~l~~L~~l~l~~n~~~~~----~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~~   71 (190)
                      +|++|++++| .+...    +...+...++|++|++++|.++..    +...+...+.|++|++++|.+.......+.. 
T Consensus        37 ~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~~~l~~-  115 (185)
T 1io0_A           37 DLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILALVE-  115 (185)
T ss_dssp             TCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHHHHH-
T ss_pred             CCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHHHHHHH-
Confidence            4788999999 88743    344566789999999999999732    3344555688999999999987544344433 


Q ss_pred             HHHHHhhcCCcccccCCCCCCcEEEc--cCCeeccc----CCccCCCCCCCcEEEcccCcce
Q 039561           72 LLALFMMKGKAFEYSTNLNVLRVIEL--SKNNFLGE----IAKGVTNPGASQTLNLSQNSFS  127 (190)
Q Consensus        72 ~~~l~~~~~~~~~~~~~~~~L~~L~l--~~n~l~~~----~p~~~~~l~~L~~L~l~~n~l~  127 (190)
                                   .+...+.|++|++  ++|.++..    +...+...+.|+.|++++|.+.
T Consensus       116 -------------~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i~  164 (185)
T 1io0_A          116 -------------ALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQG  164 (185)
T ss_dssp             -------------GGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSHH
T ss_pred             -------------HHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCCC
Confidence                         3334778999999  88999754    3344556689999999999886

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=98.53  E-value=1.8e-07  Score=72.90  Aligned_cols=112  Identities=15%  Similarity=0.122  Sum_probs=60.2

Q ss_pred             cccCCCCCCcEEEcccCcccCcCCccccCCCCccEEeccCCcccCCCcHHHHHHHHHHHhhcCCcccccCCCCCCcEEEc
Q 039561           18 TSTGALSSLESLHLHRNHLSGAIPLSLQNGTHFEVLDLRENAFIRDVPKWIKKSLLALFMMKGKAFEYSTNLNVLRVIEL   97 (190)
Q Consensus        18 ~~l~~l~~L~~l~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~~~~~l~~~~~~~~~~~~~~~~L~~L~l   97 (190)
                      ..+..+|+|+.|.++++.-. .++. + .+++|+.|++..+.+.......+..                ..+++|+.|+|
T Consensus       166 ~ll~~~P~L~~L~L~g~~~l-~l~~-~-~~~~L~~L~L~~~~l~~~~l~~l~~----------------~~lp~L~~L~L  226 (362)
T 2ra8_A          166 PVLDAMPLLNNLKIKGTNNL-SIGK-K-PRPNLKSLEIISGGLPDSVVEDILG----------------SDLPNLEKLVL  226 (362)
T ss_dssp             HHHHTCTTCCEEEEECCBTC-BCCS-C-BCTTCSEEEEECSBCCHHHHHHHHH----------------SBCTTCCEEEE
T ss_pred             HHHhcCCCCcEEEEeCCCCc-eecc-c-cCCCCcEEEEecCCCChHHHHHHHH----------------ccCCCCcEEEE
Confidence            34556789999999887422 2333 3 3778999999877754322222221                13667777776


Q ss_pred             cC--Ceeccc-----CCccC--CCCCCCcEEEcccCcceeccCcccc---CCCCCCEEeCCCC
Q 039561           98 SK--NNFLGE-----IAKGV--TNPGASQTLNLSQNSFSRTIPESIG---SMKSLESIDFSAN  148 (190)
Q Consensus        98 ~~--n~l~~~-----~p~~~--~~l~~L~~L~l~~n~l~~~~p~~l~---~l~~L~~l~l~~N  148 (190)
                      +.  +...+.     +...+  ..+++|++|++++|.+++..+..+.   .+++|+.|+++.|
T Consensus       227 ~~~~~~~~~~~~~~~l~~~l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n  289 (362)
T 2ra8_A          227 YVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAG  289 (362)
T ss_dssp             ECBCGGGTCCSCGGGTGGGSCTTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSS
T ss_pred             eccccccccchhHHHHHHHHhcCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCC
Confidence            42  111111     11112  2356777777777776543333222   3556665554444

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=98.47  E-value=1.8e-06  Score=68.22  Aligned_cols=54  Identities=13%  Similarity=0.010  Sum_probs=30.0

Q ss_pred             CcceeccCCccccCCCcccCCCCCCcEEEcccCcccCcCCccccCCCCccEEeccC
Q 039561            2 LQQGLKIQHKFSRSFPTSTGALSSLESLHLHRNHLSGAIPLSLQNGTHFEVLDLRE   57 (190)
Q Consensus         2 L~~L~l~~n~l~~~~p~~l~~l~~L~~l~l~~n~~~~~~~~~~~~l~~L~~L~l~~   57 (190)
                      |+.+.+.. .+...-...|.++++|+.++++.|.++ .++........|+.+.+..
T Consensus       159 L~~i~lp~-~l~~I~~~aF~~c~~L~~l~l~~n~l~-~I~~~aF~~~~L~~l~lp~  212 (401)
T 4fdw_A          159 VQEIVFPS-TLEQLKEDIFYYCYNLKKADLSKTKIT-KLPASTFVYAGIEEVLLPV  212 (401)
T ss_dssp             CCEEECCT-TCCEECSSTTTTCTTCCEEECTTSCCS-EECTTTTTTCCCSEEECCT
T ss_pred             ceEEEeCC-CccEehHHHhhCcccCCeeecCCCcce-EechhhEeecccCEEEeCC
Confidence            44555543 344433445667777777777777666 3443333345566666553

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=98.46  E-value=2e-07  Score=69.60  Aligned_cols=66  Identities=26%  Similarity=0.340  Sum_probs=44.8

Q ss_pred             CCCCcEEEccCCeecc--cCCccCCCCCCCcEEEcccCcceeccCccccCCC--CCCEEeCCCCceEEeecccccccCCc
Q 039561           89 LNVLRVIELSKNNFLG--EIAKGVTNPGASQTLNLSQNSFSRTIPESIGSMK--SLESIDFSANHYLNLSNNNLTGEIPS  164 (190)
Q Consensus        89 ~~~L~~L~l~~n~l~~--~~p~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~--~L~~l~l~~N~~l~l~~N~l~g~~p~  164 (190)
                      ++.|+.|+|++|++++  .+|..+..+++|+.|+|++|.+++.  ..+..++  +|+        +|++++|.+++.+|.
T Consensus       169 l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~--~~l~~l~~l~L~--------~L~L~~Npl~~~~~~  238 (267)
T 3rw6_A          169 IPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE--RELDKIKGLKLE--------ELWLDGNSLCDTFRD  238 (267)
T ss_dssp             CTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG--GGGGGGTTSCCS--------EEECTTSTTGGGCSS
T ss_pred             CCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc--hhhhhcccCCcc--------eEEccCCcCccccCc
Confidence            6778888888888875  3445556778888888888888743  3344444  444        555777777776663

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=98.45  E-value=3.6e-08  Score=76.88  Aligned_cols=133  Identities=14%  Similarity=0.110  Sum_probs=83.6

Q ss_pred             CcceeccCCccccCCCcccCCCCCCcEEEcccCcccCcCCcccc--CCCCccEEeccC--CcccCCC-cHHHHHHHHHHH
Q 039561            2 LQQGLKIQHKFSRSFPTSTGALSSLESLHLHRNHLSGAIPLSLQ--NGTHFEVLDLRE--NAFIRDV-PKWIKKSLLALF   76 (190)
Q Consensus         2 L~~L~l~~n~l~~~~p~~l~~l~~L~~l~l~~n~~~~~~~~~~~--~l~~L~~L~l~~--n~~~~~~-p~~~~~~~~~l~   76 (190)
                      |+.|.+++|.-. .+++ +. +++|+.|.+..+.++......+.  .+++|+.|+++.  +...+.. ...+..      
T Consensus       174 L~~L~L~g~~~l-~l~~-~~-~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~------  244 (362)
T 2ra8_A          174 LNNLKIKGTNNL-SIGK-KP-RPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRP------  244 (362)
T ss_dssp             CCEEEEECCBTC-BCCS-CB-CTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTGG------
T ss_pred             CcEEEEeCCCCc-eecc-cc-CCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccccchhHHHHHH------
Confidence            678888877311 2343 33 78999999998887633222332  678999999864  2222211 111110      


Q ss_pred             hhcCCcccccCCCCCCcEEEccCCeecccCCccC---CCCCCCcEEEcccCcceec----cCccccCCCCCCEEeCCCCc
Q 039561           77 MMKGKAFEYSTNLNVLRVIELSKNNFLGEIAKGV---TNPGASQTLNLSQNSFSRT----IPESIGSMKSLESIDFSANH  149 (190)
Q Consensus        77 ~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~---~~l~~L~~L~l~~n~l~~~----~p~~l~~l~~L~~l~l~~N~  149 (190)
                           .. ....+++|++|++.+|.+.+..+..+   ..++.|++|+++.|.+++.    ++..+..+++|+.|++++|.
T Consensus       245 -----~l-~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~  318 (362)
T 2ra8_A          245 -----LF-SKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNY  318 (362)
T ss_dssp             -----GS-CTTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBB
T ss_pred             -----HH-hcCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCc
Confidence                 00 00237899999999998864332222   3578999999999998863    34444567889988877765

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=98.41  E-value=2.6e-06  Score=67.22  Aligned_cols=173  Identities=10%  Similarity=0.086  Sum_probs=94.0

Q ss_pred             CcceeccCCccccCCCcccCCCCCCcEEEcccCcccCcCCccccCCCCccEEeccCCcccCCCcHHHHHHHHHHHhh--c
Q 039561            2 LQQGLKIQHKFSRSFPTSTGALSSLESLHLHRNHLSGAIPLSLQNGTHFEVLDLRENAFIRDVPKWIKKSLLALFMM--K   79 (190)
Q Consensus         2 L~~L~l~~n~l~~~~p~~l~~l~~L~~l~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~~~~~l~~~--~   79 (190)
                      |+.+.+..+ ++..-..+|.+ .+|+.+.+.. .++..-+..|..+++|+.+++..|.+.. ++...+. ...|..+  .
T Consensus       137 L~~i~l~~~-i~~I~~~aF~~-~~L~~i~lp~-~l~~I~~~aF~~c~~L~~l~l~~n~l~~-I~~~aF~-~~~L~~l~lp  211 (401)
T 4fdw_A          137 IAKVVLNEG-LKSIGDMAFFN-STVQEIVFPS-TLEQLKEDIFYYCYNLKKADLSKTKITK-LPASTFV-YAGIEEVLLP  211 (401)
T ss_dssp             CSEEECCTT-CCEECTTTTTT-CCCCEEECCT-TCCEECSSTTTTCTTCCEEECTTSCCSE-ECTTTTT-TCCCSEEECC
T ss_pred             ccEEEeCCC-ccEECHHhcCC-CCceEEEeCC-CccEehHHHhhCcccCCeeecCCCcceE-echhhEe-ecccCEEEeC
Confidence            445555544 44423334555 5788888875 5553444667788888888888876542 3322111 1111111  0


Q ss_pred             CC----cccccCCCCCCcEEEccC---------------------CeecccCCccCCCCCCCcEEEcccCcce-----ec
Q 039561           80 GK----AFEYSTNLNVLRVIELSK---------------------NNFLGEIAKGVTNPGASQTLNLSQNSFS-----RT  129 (190)
Q Consensus        80 ~~----~~~~~~~~~~L~~L~l~~---------------------n~l~~~~p~~~~~l~~L~~L~l~~n~l~-----~~  129 (190)
                      ..    -..+|.++++|+.+.+..                     +.+.......|.++.+|+.+++.+|.+.     ..
T Consensus       212 ~~l~~I~~~aF~~~~~L~~l~l~~~l~~I~~~aF~~~~L~~i~lp~~i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I  291 (401)
T 4fdw_A          212 VTLKEIGSQAFLKTSQLKTIEIPENVSTIGQEAFRESGITTVKLPNGVTNIASRAFYYCPELAEVTTYGSTFNDDPEAMI  291 (401)
T ss_dssp             TTCCEECTTTTTTCTTCCCEECCTTCCEECTTTTTTCCCSEEEEETTCCEECTTTTTTCTTCCEEEEESSCCCCCTTCEE
T ss_pred             CchheehhhHhhCCCCCCEEecCCCccCccccccccCCccEEEeCCCccEEChhHhhCCCCCCEEEeCCccccCCcccEE
Confidence            00    012333444444444432                     2233233456777788888888776654     24


Q ss_pred             cCccccCCCCCCEEeCCCCc---------------eEEeecccccccCCcc-c-cccccccccccCCccc
Q 039561          130 IPESIGSMKSLESIDFSANH---------------YLNLSNNNLTGEIPSG-I-QLQGFHQSRFAGSELC  182 (190)
Q Consensus       130 ~p~~l~~l~~L~~l~l~~N~---------------~l~l~~N~l~g~~p~~-~-~~~~l~~~~~~~n~l~  182 (190)
                      .+..|..+++|+.+++..+-               .+++..| ++ .++.. + .. +|+.+.+.+|.+.
T Consensus       292 ~~~aF~~c~~L~~l~l~~~i~~I~~~aF~~c~~L~~l~lp~~-l~-~I~~~aF~~~-~L~~l~l~~n~~~  358 (401)
T 4fdw_A          292 HPYCLEGCPKLARFEIPESIRILGQGLLGGNRKVTQLTIPAN-VT-QINFSAFNNT-GIKEVKVEGTTPP  358 (401)
T ss_dssp             CTTTTTTCTTCCEECCCTTCCEECTTTTTTCCSCCEEEECTT-CC-EECTTSSSSS-CCCEEEECCSSCC
T ss_pred             CHHHhhCCccCCeEEeCCceEEEhhhhhcCCCCccEEEECcc-cc-EEcHHhCCCC-CCCEEEEcCCCCc
Confidence            45567778888888777442               4555433 44 33332 3 44 7788888877443

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=98.25  E-value=9.3e-07  Score=65.92  Aligned_cols=63  Identities=19%  Similarity=0.159  Sum_probs=50.2

Q ss_pred             CCcceeccCCcccc--CCCcccCCCCCCcEEEcccCcccCcCCccccCCC--CccEEeccCCcccCCCc
Q 039561            1 MLQQGLKIQHKFSR--SFPTSTGALSSLESLHLHRNHLSGAIPLSLQNGT--HFEVLDLRENAFIRDVP   65 (190)
Q Consensus         1 ~L~~L~l~~n~l~~--~~p~~l~~l~~L~~l~l~~n~~~~~~~~~~~~l~--~L~~L~l~~n~~~~~~p   65 (190)
                      .|++|++++|.+++  .+|..+..+++|+.|++++|.+++.  ..+..+.  .|+.|++++|.+.+.+|
T Consensus       171 ~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~--~~l~~l~~l~L~~L~L~~Npl~~~~~  237 (267)
T 3rw6_A          171 ELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE--RELDKIKGLKLEELWLDGNSLCDTFR  237 (267)
T ss_dssp             TCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG--GGGGGGTTSCCSEEECTTSTTGGGCS
T ss_pred             CCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc--hhhhhcccCCcceEEccCCcCccccC
Confidence            37899999999998  3455667899999999999999853  2233333  89999999999887666

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=98.01  E-value=2.3e-06  Score=59.71  Aligned_cols=88  Identities=8%  Similarity=-0.033  Sum_probs=51.2

Q ss_pred             CCCcEEEcccCcccCcCCccccCCCCccEEeccCCc-ccCCCcHHHHHHHHHHHhhcCCcccccCCCCCCcEEEccCCe-
Q 039561           24 SSLESLHLHRNHLSGAIPLSLQNGTHFEVLDLRENA-FIRDVPKWIKKSLLALFMMKGKAFEYSTNLNVLRVIELSKNN-  101 (190)
Q Consensus        24 ~~L~~l~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~-~~~~~p~~~~~~~~~l~~~~~~~~~~~~~~~~L~~L~l~~n~-  101 (190)
                      ..|+.|+++++.++..--..+..+++|+.|++++|. +++..-..+.. ++.             ..++|++|++++|. 
T Consensus        61 ~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~-~~~-------------~~~~L~~L~Ls~C~~  126 (176)
T 3e4g_A           61 YKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQ-LEN-------------LQKSMLEMEIISCGN  126 (176)
T ss_dssp             CCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHT-CHH-------------HHHHCCEEEEESCTT
T ss_pred             ceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHh-ccc-------------ccCCCCEEEcCCCCc
Confidence            457788888887763333445677788888888775 33221112211 000             01357778887764 


Q ss_pred             ecccCCccCCCCCCCcEEEcccCc
Q 039561          102 FLGEIAKGVTNPGASQTLNLSQNS  125 (190)
Q Consensus       102 l~~~~p~~~~~l~~L~~L~l~~n~  125 (190)
                      +++..-..+..+++|+.|+++++.
T Consensus       127 ITD~Gl~~L~~~~~L~~L~L~~c~  150 (176)
T 3e4g_A          127 VTDKGIIALHHFRNLKYLFLSDLP  150 (176)
T ss_dssp             CCHHHHHHGGGCTTCCEEEEESCT
T ss_pred             CCHHHHHHHhcCCCCCEEECCCCC
Confidence            664433445667777777777764

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=98.00  E-value=8.2e-07  Score=61.99  Aligned_cols=92  Identities=9%  Similarity=0.103  Sum_probs=64.6

Q ss_pred             CCccccCCCCccEEeccCCcccCCCcHHHHHHHHHHHhhcCCcccccCCCCCCcEEEccCCe-ecccCCccCCCC----C
Q 039561           40 IPLSLQNGTHFEVLDLRENAFIRDVPKWIKKSLLALFMMKGKAFEYSTNLNVLRVIELSKNN-FLGEIAKGVTNP----G  114 (190)
Q Consensus        40 ~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~~~~~l~~~~~~~~~~~~~~~~L~~L~l~~n~-l~~~~p~~~~~l----~  114 (190)
                      +|.....-..|+.||++++.++...-..+.                  .+++|+.|+|++|. +++..-..+..+    +
T Consensus        53 LP~~~~~~~~L~~LDLs~~~Itd~GL~~L~------------------~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~  114 (176)
T 3e4g_A           53 LPTGPLDKYKIQAIDATDSCIMSIGFDHME------------------GLQYVEKIRLCKCHYIEDGCLERLSQLENLQK  114 (176)
T ss_dssp             SCCCSTTCCCEEEEEEESCCCCGGGGGGGT------------------TCSCCCEEEEESCTTCCHHHHHHHHTCHHHHH
T ss_pred             CCcccCCCceEeEEeCcCCCccHHHHHHhc------------------CCCCCCEEEeCCCCccCHHHHHHHHhcccccC
Confidence            343332335799999999987654333333                  38999999999985 765443445543    4


Q ss_pred             CCcEEEcccCc-ceeccCccccCCCCCCEEeCCCCc
Q 039561          115 ASQTLNLSQNS-FSRTIPESIGSMKSLESIDFSANH  149 (190)
Q Consensus       115 ~L~~L~l~~n~-l~~~~p~~l~~l~~L~~l~l~~N~  149 (190)
                      .|+.|++++|. +++.--..+..+++|+.|+++++.
T Consensus       115 ~L~~L~Ls~C~~ITD~Gl~~L~~~~~L~~L~L~~c~  150 (176)
T 3e4g_A          115 SMLEMEIISCGNVTDKGIIALHHFRNLKYLFLSDLP  150 (176)
T ss_dssp             HCCEEEEESCTTCCHHHHHHGGGCTTCCEEEEESCT
T ss_pred             CCCEEEcCCCCcCCHHHHHHHhcCCCCCEEECCCCC
Confidence            79999999985 876545567788999988877765

>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1

Probab=97.86  E-value=8.4e-06  Score=57.89  Aligned_cols=114  Identities=14%  Similarity=0.165  Sum_probs=68.3

Q ss_pred             CCCCCCcEEEcccC-cccC----cCCccccCCCCccEEeccCCcccCCCcHHHHHHHHHHHhhcCCcccccCCCCCCcEE
Q 039561           21 GALSSLESLHLHRN-HLSG----AIPLSLQNGTHFEVLDLRENAFIRDVPKWIKKSLLALFMMKGKAFEYSTNLNVLRVI   95 (190)
Q Consensus        21 ~~l~~L~~l~l~~n-~~~~----~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~~~~~l~~~~~~~~~~~~~~~~L~~L   95 (190)
                      .+-+.|+.|++++| .+..    .+...+..-+.|+.|++++|.+....-..+...++.              -..|+.|
T Consensus        38 ~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~--------------N~tL~~L  103 (197)
T 1pgv_A           38 EDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIET--------------SPSLRVL  103 (197)
T ss_dssp             TTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHH--------------CSSCCEE
T ss_pred             hcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhc--------------CCccCeE
Confidence            34567888888775 6641    133445556678888888888765443444433332              5678888


Q ss_pred             EccCCeeccc----CCccCCCCCCCcEEEcccC---cceec----cCccccCCCCCCEEeCCCC
Q 039561           96 ELSKNNFLGE----IAKGVTNPGASQTLNLSQN---SFSRT----IPESIGSMKSLESIDFSAN  148 (190)
Q Consensus        96 ~l~~n~l~~~----~p~~~~~l~~L~~L~l~~n---~l~~~----~p~~l~~l~~L~~l~l~~N  148 (190)
                      +|++|.|+..    +.+.+..-+.|+.|++++|   .+...    +.+.+..-++|+.++++.|
T Consensus       104 ~L~~N~Ig~~Ga~ala~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~~  167 (197)
T 1pgv_A          104 NVESNFLTPELLARLLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFA  167 (197)
T ss_dssp             ECCSSBCCHHHHHHHHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCC
T ss_pred             ecCCCcCCHHHHHHHHHHHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccCC
Confidence            8888888743    3344555667888888754   33321    2334445566776665443

>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1

Probab=97.66  E-value=6.8e-06  Score=58.36  Aligned_cols=113  Identities=9%  Similarity=0.113  Sum_probs=78.4

Q ss_pred             CCcceeccCC-ccccC----CCcccCCCCCCcEEEcccCcccCc----CCccccCCCCccEEeccCCcccCCCcHHHHHH
Q 039561            1 MLQQGLKIQH-KFSRS----FPTSTGALSSLESLHLHRNHLSGA----IPLSLQNGTHFEVLDLRENAFIRDVPKWIKKS   71 (190)
Q Consensus         1 ~L~~L~l~~n-~l~~~----~p~~l~~l~~L~~l~l~~n~~~~~----~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~~   71 (190)
                      +|++|++++| .+...    +.+.+..-+.|+.|++++|.++..    +.+.+..-+.|+.|++++|.+....-..+.. 
T Consensus        42 ~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~ala~-  120 (197)
T 1pgv_A           42 DLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLLR-  120 (197)
T ss_dssp             SCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHHH-
T ss_pred             CccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHHHHH-
Confidence            4788999985 66532    344566778999999999999822    3334445578999999999987544444443 


Q ss_pred             HHHHHhhcCCcccccCCCCCCcEEEccCC---eeccc----CCccCCCCCCCcEEEcccCcce
Q 039561           72 LLALFMMKGKAFEYSTNLNVLRVIELSKN---NFLGE----IAKGVTNPGASQTLNLSQNSFS  127 (190)
Q Consensus        72 ~~~l~~~~~~~~~~~~~~~~L~~L~l~~n---~l~~~----~p~~~~~l~~L~~L~l~~n~l~  127 (190)
                                   .+..-..|++|+++++   .+...    +...+..-+.|+.|+++.|.+.
T Consensus       121 -------------aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~~~~g  170 (197)
T 1pgv_A          121 -------------STLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFASME  170 (197)
T ss_dssp             -------------HTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCCHH
T ss_pred             -------------HHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccCCCcc
Confidence                         2233567999999865   44422    3444556688999999877653

>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*

Probab=97.16  E-value=0.00095  Score=44.05  Aligned_cols=57  Identities=19%  Similarity=0.106  Sum_probs=44.4

Q ss_pred             ceeccCCccc-cCCCcccCCCCCCcEEEcccCcccCcCCccccCCCCccEEeccCCcccC
Q 039561            4 QGLKIQHKFS-RSFPTSTGALSSLESLHLHRNHLSGAIPLSLQNGTHFEVLDLRENAFIR   62 (190)
Q Consensus         4 ~L~l~~n~l~-~~~p~~l~~l~~L~~l~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~   62 (190)
                      +++.++++++ ..+|..+.  +++++|++++|.++..-+..|..++.|++|++++|.+.-
T Consensus        12 ~v~Cs~~~L~~~~vP~~lp--~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~C   69 (130)
T 3rfe_A           12 LVDCGRRGLTWASLPTAFP--VDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWRC   69 (130)
T ss_dssp             EEECCSSCCCTTTSCSCCC--TTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCBC
T ss_pred             EEEeCCCCCccccCCCCCC--cCCCEEECCCCcCCccChhhhhhccccCEEEecCCCeec
Confidence            5677888887 23775433  479999999999995445667789999999999998753

>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}

Probab=97.02  E-value=0.0037  Score=48.45  Aligned_cols=60  Identities=8%  Similarity=0.084  Sum_probs=36.4

Q ss_pred             CCCCCCcEEEccCCeecccCCccCCCCCCCcEEEcccCcceeccCccccCCCCCCEEeCCC
Q 039561           87 TNLNVLRVIELSKNNFLGEIAKGVTNPGASQTLNLSQNSFSRTIPESIGSMKSLESIDFSA  147 (190)
Q Consensus        87 ~~~~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~l~l~~  147 (190)
                      .++.+|+.+.+..+.+.......|.++.+|+.+.+..+ ++..-..+|..+.+|+.+.+..
T Consensus       283 ~~c~~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~ip~  342 (379)
T 4h09_A          283 SGCSNLTKVVMDNSAIETLEPRVFMDCVKLSSVTLPTA-LKTIQVYAFKNCKALSTISYPK  342 (379)
T ss_dssp             TTCTTCCEEEECCTTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCCCCCCT
T ss_pred             ccccccccccccccccceehhhhhcCCCCCCEEEcCcc-ccEEHHHHhhCCCCCCEEEECC
Confidence            34667777777666555333456667777777777544 4423345666777777666543

>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}

Probab=96.99  E-value=0.0042  Score=48.49  Aligned_cols=109  Identities=9%  Similarity=0.195  Sum_probs=67.6

Q ss_pred             ccCCCCCCcEEEcccCcccCcCCccccCCCCccEEeccCCcccCCCcHHHHHHHHHHHhhcCCcccccCCCCCCcEEEcc
Q 039561           19 STGALSSLESLHLHRNHLSGAIPLSLQNGTHFEVLDLRENAFIRDVPKWIKKSLLALFMMKGKAFEYSTNLNVLRVIELS   98 (190)
Q Consensus        19 ~l~~l~~L~~l~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~~~~~l~~~~~~~~~~~~~~~~L~~L~l~   98 (190)
                      +|.....|+.+.+..+..+ .-...|..++.|+.+.+..+- . .++.                 .+|.++.+|+.+.+.
T Consensus       260 aF~~c~~L~~i~lp~~~~~-I~~~aF~~c~~L~~i~l~~~i-~-~I~~-----------------~aF~~c~~L~~i~lp  319 (394)
T 4gt6_A          260 AFDSCAYLASVKMPDSVVS-IGTGAFMNCPALQDIEFSSRI-T-ELPE-----------------SVFAGCISLKSIDIP  319 (394)
T ss_dssp             TTTTCSSCCEEECCTTCCE-ECTTTTTTCTTCCEEECCTTC-C-EECT-----------------TTTTTCTTCCEEECC
T ss_pred             eeeecccccEEecccccce-ecCcccccccccccccCCCcc-c-ccCc-----------------eeecCCCCcCEEEeC
Confidence            4555667777777655433 334456666777777765321 2 2222                 133447888888886


Q ss_pred             CCeecccCCccCCCCCCCcEEEcccCcceeccCccccCCCCCCEEeCCCCc
Q 039561           99 KNNFLGEIAKGVTNPGASQTLNLSQNSFSRTIPESIGSMKSLESIDFSANH  149 (190)
Q Consensus        99 ~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~l~l~~N~  149 (190)
                      .+ +......+|.++.+|+.+.+..+ ++..-..+|..+.+|+.+++.++.
T Consensus       320 ~~-v~~I~~~aF~~C~~L~~i~ip~s-v~~I~~~aF~~C~~L~~i~~~~~~  368 (394)
T 4gt6_A          320 EG-ITQILDDAFAGCEQLERIAIPSS-VTKIPESAFSNCTALNNIEYSGSR  368 (394)
T ss_dssp             TT-CCEECTTTTTTCTTCCEEEECTT-CCBCCGGGGTTCTTCCEEEESSCH
T ss_pred             Cc-ccEehHhHhhCCCCCCEEEECcc-cCEEhHhHhhCCCCCCEEEECCce
Confidence            54 44344567888888998888655 553445678888888877765553

>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*

Probab=96.94  E-value=0.0018  Score=42.73  Aligned_cols=55  Identities=13%  Similarity=0.291  Sum_probs=39.5

Q ss_pred             cEEEccCCeec-ccCCccCCCCCCCcEEEcccCcceeccCccccCCCCCCEEeCCCCc
Q 039561           93 RVIELSKNNFL-GEIAKGVTNPGASQTLNLSQNSFSRTIPESIGSMKSLESIDFSANH  149 (190)
Q Consensus        93 ~~L~l~~n~l~-~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~l~l~~N~  149 (190)
                      ..++.+++.++ ..+|..+.  ..++.|+|++|.|+...+..|..+++|+.+++++|.
T Consensus        11 ~~v~Cs~~~L~~~~vP~~lp--~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP   66 (130)
T 3rfe_A           11 TLVDCGRRGLTWASLPTAFP--VDTTELVLTGNNLTALPPGLLDALPALRTAHLGANP   66 (130)
T ss_dssp             TEEECCSSCCCTTTSCSCCC--TTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSC
T ss_pred             CEEEeCCCCCccccCCCCCC--cCCCEEECCCCcCCccChhhhhhccccCEEEecCCC
Confidence            35677777774 25565443  468899999999985445567888889888877775

>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}

Probab=96.67  E-value=0.0076  Score=47.02  Aligned_cols=106  Identities=13%  Similarity=0.044  Sum_probs=59.5

Q ss_pred             ccCCCCCCcEEEcccCcccCcCCccccCCCCccEEeccCCcccCCCcHHHHHHHHHHHhhcCCcccccCCCCCCcEEEcc
Q 039561           19 STGALSSLESLHLHRNHLSGAIPLSLQNGTHFEVLDLRENAFIRDVPKWIKKSLLALFMMKGKAFEYSTNLNVLRVIELS   98 (190)
Q Consensus        19 ~l~~l~~L~~l~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~~~~~l~~~~~~~~~~~~~~~~L~~L~l~   98 (190)
                      .+.....++.+.+..+... .....|.....++......+.+...   .+                  ..+.+|+.+.+.
T Consensus       248 ~f~~~~~l~~~~~~~~~~~-i~~~~F~~~~~l~~~~~~~~~i~~~---~F------------------~~~~~L~~i~l~  305 (394)
T 4fs7_A          248 VFYGCTDLESISIQNNKLR-IGGSLFYNCSGLKKVIYGSVIVPEK---TF------------------YGCSSLTEVKLL  305 (394)
T ss_dssp             TTTTCSSCCEEEECCTTCE-ECSCTTTTCTTCCEEEECSSEECTT---TT------------------TTCTTCCEEEEC
T ss_pred             cccccccceeEEcCCCcce-eeccccccccccceeccCceeeccc---cc------------------cccccccccccc
Confidence            4567788888888777554 4455666777777777665443211   11                  125556666654


Q ss_pred             CCeecccCCccCCCCCCCcEEEcccCcceeccCccccCCCCCCEEeCCCC
Q 039561           99 KNNFLGEIAKGVTNPGASQTLNLSQNSFSRTIPESIGSMKSLESIDFSAN  148 (190)
Q Consensus        99 ~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~l~l~~N  148 (190)
                      .+ +......+|.++.+|+.+++..+ ++..-..+|..+.+|+.+++..+
T Consensus       306 ~~-i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~c~~L~~i~lp~~  353 (394)
T 4fs7_A          306 DS-VKFIGEEAFESCTSLVSIDLPYL-VEEIGKRSFRGCTSLSNINFPLS  353 (394)
T ss_dssp             TT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCEECCCTT
T ss_pred             cc-cceechhhhcCCCCCCEEEeCCc-ccEEhHHhccCCCCCCEEEECcc
Confidence            33 33223345566666666666543 44233445666666666555433

>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}

Probab=96.49  E-value=0.068  Score=41.58  Aligned_cols=103  Identities=14%  Similarity=0.056  Sum_probs=50.5

Q ss_pred             CCCCCcEEEcccCcccCcCCccccCCCCccEEeccCCcccCCCcHHHHHHHHHHHhhcCCcccccCCCCCCcEEEccCCe
Q 039561           22 ALSSLESLHLHRNHLSGAIPLSLQNGTHFEVLDLRENAFIRDVPKWIKKSLLALFMMKGKAFEYSTNLNVLRVIELSKNN  101 (190)
Q Consensus        22 ~l~~L~~l~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~~~~~l~~~~~~~~~~~~~~~~L~~L~l~~n~  101 (190)
                      ....|+.+.+....-. .-...+..+..++.+.+..+... .....+                  ..+..++.+......
T Consensus       228 ~~~~l~~i~ip~~~~~-i~~~~f~~~~~l~~~~~~~~~~~-i~~~~F------------------~~~~~l~~~~~~~~~  287 (394)
T 4fs7_A          228 SKTGVKNIIIPDSFTE-LGKSVFYGCTDLESISIQNNKLR-IGGSLF------------------YNCSGLKKVIYGSVI  287 (394)
T ss_dssp             TTCCCCEEEECTTCCE-ECSSTTTTCSSCCEEEECCTTCE-ECSCTT------------------TTCTTCCEEEECSSE
T ss_pred             ccCCCceEEECCCcee-cccccccccccceeEEcCCCcce-eecccc------------------ccccccceeccCcee
Confidence            3455666665443211 22334555566666666554321 111111                  225556655555443


Q ss_pred             ecccCCccCCCCCCCcEEEcccCcceeccCccccCCCCCCEEeCCCC
Q 039561          102 FLGEIAKGVTNPGASQTLNLSQNSFSRTIPESIGSMKSLESIDFSAN  148 (190)
Q Consensus       102 l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~l~l~~N  148 (190)
                      +.   ...+..+.+|+.+.+..+ ++..-..+|..+.+|+.+++..+
T Consensus       288 i~---~~~F~~~~~L~~i~l~~~-i~~I~~~aF~~c~~L~~i~lp~~  330 (394)
T 4fs7_A          288 VP---EKTFYGCSSLTEVKLLDS-VKFIGEEAFESCTSLVSIDLPYL  330 (394)
T ss_dssp             EC---TTTTTTCTTCCEEEECTT-CCEECTTTTTTCTTCCEECCCTT
T ss_pred             ec---cccccccccccccccccc-cceechhhhcCCCCCCEEEeCCc
Confidence            32   234556666776666544 43233445666666766666433

>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}

Probab=96.36  E-value=0.013  Score=45.62  Aligned_cols=106  Identities=9%  Similarity=0.117  Sum_probs=69.1

Q ss_pred             cccCCCCCCcEEEcccCcccCcCCccccCCCCccEEeccCCcccCCCcHHHHHHHHHHHhhcCCcccccCCCCCCcEEEc
Q 039561           18 TSTGALSSLESLHLHRNHLSGAIPLSLQNGTHFEVLDLRENAFIRDVPKWIKKSLLALFMMKGKAFEYSTNLNVLRVIEL   97 (190)
Q Consensus        18 ~~l~~l~~L~~l~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~~~~~l~~~~~~~~~~~~~~~~L~~L~l   97 (190)
                      ..+.+.+.|+.+.+. +.++..-...|..+.+|+.+++..+- . .+++                 .+|.++.+|+.+.+
T Consensus       282 ~aF~~c~~L~~i~l~-~~i~~I~~~aF~~c~~L~~i~lp~~v-~-~I~~-----------------~aF~~C~~L~~i~i  341 (394)
T 4gt6_A          282 GAFMNCPALQDIEFS-SRITELPESVFAGCISLKSIDIPEGI-T-QILD-----------------DAFAGCEQLERIAI  341 (394)
T ss_dssp             TTTTTCTTCCEEECC-TTCCEECTTTTTTCTTCCEEECCTTC-C-EECT-----------------TTTTTCTTCCEEEE
T ss_pred             cccccccccccccCC-CcccccCceeecCCCCcCEEEeCCcc-c-EehH-----------------hHhhCCCCCCEEEE
Confidence            356778999999996 44552334567888999999997652 2 2222                 13345899999999


Q ss_pred             cCCeecccCCccCCCCCCCcEEEcccCcceeccCccccCCCCCCEEeCCC
Q 039561           98 SKNNFLGEIAKGVTNPGASQTLNLSQNSFSRTIPESIGSMKSLESIDFSA  147 (190)
Q Consensus        98 ~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~l~l~~  147 (190)
                      ..+ +......+|.++.+|+.+++.++... .  ..+..+.+|+.+.+..
T Consensus       342 p~s-v~~I~~~aF~~C~~L~~i~~~~~~~~-~--~~~~~~~~L~~i~i~~  387 (394)
T 4gt6_A          342 PSS-VTKIPESAFSNCTALNNIEYSGSRSQ-W--NAISTDSGLQNLPVAP  387 (394)
T ss_dssp             CTT-CCBCCGGGGTTCTTCCEEEESSCHHH-H--HTCBCCCCC-------
T ss_pred             Ccc-cCEEhHhHhhCCCCCCEEEECCceee-h--hhhhccCCCCEEEeCC
Confidence            654 55344568999999999999887654 1  3566677788766543

>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}

Probab=96.19  E-value=0.018  Score=44.45  Aligned_cols=52  Identities=10%  Similarity=0.011  Sum_probs=35.4

Q ss_pred             ccCCCCCCcEEEccCCeecccCCccCCCCCCCcEEEcccCcceeccCccccCCC
Q 039561           85 YSTNLNVLRVIELSKNNFLGEIAKGVTNPGASQTLNLSQNSFSRTIPESIGSMK  138 (190)
Q Consensus        85 ~~~~~~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~  138 (190)
                      +|.++.+|+.+.+..+ +......+|.++.+|+.+.+..+ ++..-..+|..+.
T Consensus       305 aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~ip~~-v~~I~~~aF~~c~  356 (379)
T 4h09_A          305 VFMDCVKLSSVTLPTA-LKTIQVYAFKNCKALSTISYPKS-ITLIESGAFEGSS  356 (379)
T ss_dssp             TTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCCCCCCTT-CCEECTTTTTTSS
T ss_pred             hhcCCCCCCEEEcCcc-ccEEHHHHhhCCCCCCEEEECCc-cCEEchhHhhCCC
Confidence            3455899999999654 55344567899999999988655 4423345565554

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	190
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	1e-14
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	2e-06
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	0.001
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	4e-10
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	3e-04
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	9e-06
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	0.001
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	4e-04
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	5e-04
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	7e-04
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	0.001
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	7e-04
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	0.003

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 68.6 bits (166), Expect = 1e-14
 Identities = 28/71 (39%), Positives = 36/71 (50%), Gaps = 9/71 (12%)

Query: 120 NLSQNSFSRTIPESIGSMKSLESIDFSANHYLNLSNNNLTGEIPSGIQLQGFHQSRFAG- 178
           +L  N    T+P+ +  +K L          LN+S NNL GEIP G  LQ F  S +A  
Sbjct: 250 DLRNNRIYGTLPQGLTQLKFLH--------SLNVSFNNLCGEIPQGGNLQRFDVSAYANN 301

Query: 179 SELCGAPFPKC 189
             LCG+P P C
Sbjct: 302 KCLCGSPLPAC 312

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 45.1 bits (105), Expect = 2e-06
 Identities = 15/55 (27%), Positives = 22/55 (40%), Gaps = 1/55 (1%)

Query: 11  KFSRSFPTSTGALSSLESLHLHRNHLSGAIPLSLQNGTHFEVLDLRENAFIRDVP 65
           +   + P     L  L SL++  N+L G IP    N   F+V     N  +   P
Sbjct: 255 RIYGTLPQGLTQLKFLHSLNVSFNNLCGEIP-QGGNLQRFDVSAYANNKCLCGSP 308

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 36.3 bits (82), Expect = 0.001
 Identities = 13/74 (17%), Positives = 21/74 (28%), Gaps = 19/74 (25%)

Query: 30  HLHRNHLSGAIPLSLQNGTHFEVLDLRENAFIRDVPKWIKKSLLALFMMKGKAFEYSTNL 89
            L  N + G +P  L        L++  N    ++P+                     NL
Sbjct: 250 DLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQG-------------------GNL 290

Query: 90  NVLRVIELSKNNFL 103
               V   + N  L
Sbjct: 291 QRFDVSAYANNKCL 304

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 55.8 bits (133), Expect = 4e-10
 Identities = 30/149 (20%), Positives = 54/149 (36%), Gaps = 16/149 (10%)

Query: 17  PTSTGALSSLESLHLHRNHLSGAIPLSLQNGTHFEVLDLRENAFIRDVPKW--IKKSLLA 74
             +  +L++L  L L  N +S   PLS    T    L L  N      P       + L 
Sbjct: 234 IGTLASLTNLTDLDLANNQISNLAPLS--GLTKLTELKLGANQISNISPLAGLTALTNLE 291

Query: 75  LFMMKGKAFEYSTNLNVLRVIELSKNNFLGEIAKGVTNPGASQTLNLSQNSFSRTIPESI 134
           L   + +     +NL  L  + L  NN        V++    Q L  + N    +   S+
Sbjct: 292 LNENQLEDISPISNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFANNKV--SDVSSL 347

Query: 135 GSMKSLESIDFSANHYLNLSNNNLTGEIP 163
            ++ ++         +L+  +N ++   P
Sbjct: 348 ANLTNIN--------WLSAGHNQISDLTP 368

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 38.1 bits (87), Expect = 3e-04
 Identities = 13/45 (28%), Positives = 20/45 (44%), Gaps = 2/45 (4%)

Query: 15  SFPTSTGALSSLESLHLHRNHLSGAIPLSLQNGTHFEVLDLRENA 59
           S  +S   L+++  L    N +S   PL+  N T    L L + A
Sbjct: 342 SDVSSLANLTNINWLSAGHNQISDLTPLA--NLTRITQLGLNDQA 384

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 42.7 bits (99), Expect = 9e-06
 Identities = 26/162 (16%), Positives = 47/162 (29%), Gaps = 18/162 (11%)

Query: 24  SSLESLHLHRNHLSGAIPLSLQNGTHFEVLDLRENAFIRDVPKWIK--KSLLALFMMKGK 81
                L L  N ++       +N  +   L L  N   +  P        L  L++ K +
Sbjct: 31  PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQ 90

Query: 82  AFEYSTNLNVLRVIELSKNNFLGEIAKGVTNPGASQT---LNLSQNSFSRTIPESIGSMK 138
             E    +           N + ++ K V N         L  +    S     +   MK
Sbjct: 91  LKELPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMK 150

Query: 139 SLESIDFSANH-------------YLNLSNNNLTGEIPSGIQ 167
            L  I  +  +              L+L  N +T    + ++
Sbjct: 151 KLSYIRIADTNITTIPQGLPPSLTELHLDGNKITKVDAASLK 192

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 36.2 bits (82), Expect = 0.001
 Identities = 26/147 (17%), Positives = 51/147 (34%), Gaps = 8/147 (5%)

Query: 9   QHKFSRSFPTSTGALSSLESLHLHRNHLSGAIPLSLQNGTHFEVLDLRENAFIRDVPKWI 68
            +K S+  P +   L  LE L+L +N L        +      V +       + V   +
Sbjct: 64  NNKISKISPGAFAPLVKLERLYLSKNQLKELPEKMPKTLQELRVHENEITKVRKSVFNGL 123

Query: 69  KKSLLALFMMK-----GKAFEYSTNLNVLRVIELSKNNFLGEIAKGVTNPGASQTLNLSQ 123
            + ++           G        +  L  I ++  N +  I +G   P +   L+L  
Sbjct: 124 NQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTN-ITTIPQG--LPPSLTELHLDG 180

Query: 124 NSFSRTIPESIGSMKSLESIDFSANHY 150
           N  ++    S+  + +L  +  S N  
Sbjct: 181 NKITKVDAASLKGLNNLAKLGLSFNSI 207

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.0 bits (86), Expect = 4e-04
 Identities = 15/84 (17%), Positives = 31/84 (36%), Gaps = 7/84 (8%)

Query: 88  NLNVLRVIELSKNNF----LGEIAKGVTNPGASQTLNLSQNSFSRTIPESIGSMKSLESI 143
             +VLRV+ L+  +        +A  +    + + L+LS N         +   +S+   
Sbjct: 367 PGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLV--ESVRQ- 423

Query: 144 DFSANHYLNLSNNNLTGEIPSGIQ 167
                  L L +   + E+   +Q
Sbjct: 424 PGCLLEQLVLYDIYWSEEMEDRLQ 447

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.6 bits (85), Expect = 5e-04
 Identities = 11/87 (12%), Positives = 28/87 (32%), Gaps = 20/87 (22%)

Query: 88  NLNVLRVIELSKNNF----LGEIAKGVTNPGASQTLNLSQNSFS----RTIPESIGSMKS 139
           +L+ ++ +++           E+   +      Q + L     +    + I  ++    +
Sbjct: 1   SLD-IQSLDIQCEELSDARWAELLPLLQQ---CQVVRLDDCGLTEARCKDISSALRVNPA 56

Query: 140 LESIDFSANHYLNLSNNNLTGEIPSGI 166
           L          LNL +N L       +
Sbjct: 57  LA--------ELNLRSNELGDVGVHCV 75

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.3 bits (84), Expect = 7e-04
 Identities = 14/89 (15%), Positives = 25/89 (28%), Gaps = 17/89 (19%)

Query: 24  SSLESLHLHRNHLSG----AIPLSLQNGTHFEVLDLRENAFIRDVPKWIKKSLLALFMMK 79
           S L  L L    +S     ++  +L        LDL  N         + +S+       
Sbjct: 369 SVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESV------- 421

Query: 80  GKAFEYSTNLNVLRVIELSKNNFLGEIAK 108
                      +L  + L    +  E+  
Sbjct: 422 ------RQPGCLLEQLVLYDIYWSEEMED 444

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.5 bits (82), Expect = 0.001
 Identities = 16/69 (23%), Positives = 24/69 (34%), Gaps = 5/69 (7%)

Query: 7   KIQHKFSRSFPTSTGALSSLESLHLHRNHLSGAIPLSL-----QNGTHFEVLDLRENAFI 61
            +      S   +  A  SL  L L  N L  A  L L     Q G   E L L +  + 
Sbjct: 380 DVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGCLLEQLVLYDIYWS 439

Query: 62  RDVPKWIKK 70
            ++   ++ 
Sbjct: 440 EEMEDRLQA 448

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.1 bits (84), Expect = 7e-04
 Identities = 32/183 (17%), Positives = 56/183 (30%), Gaps = 29/183 (15%)

Query: 1   MLQQGLKIQHKFSRSFPTSTGALSSLESLHLHRNHLSGAIPLSLQNGTHFEVLDLRENAF 60
            LQ      +        +   L +L  L LH N +S     + +     + L L +N  
Sbjct: 130 ALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRV 189

Query: 61  IRDVPKWIKKSLLALFMMKGKAFEYSTNLNVLRVIELSKNNFLGEIAKGVTNPGASQTLN 120
               P   +                  +L  L  + L  NN      + +    A Q L 
Sbjct: 190 AHVHPHAFR------------------DLGRLMTLYLFANNLSALPTEALAPLRALQYLR 231

Query: 121 LSQNSFSRTIPESIGSMKSLESIDFSANHYLNLSNNNLTGEIPSGIQLQGFHQSRFAGSE 180
           L+ N +      +      L+            S++ +   +P   +L G    R A ++
Sbjct: 232 LNDNPWVCDCR-ARPLWAWLQK--------FRGSSSEVPCSLPQ--RLAGRDLKRLAAND 280

Query: 181 LCG 183
           L G
Sbjct: 281 LQG 283

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 35.2 bits (79), Expect = 0.003
 Identities = 17/78 (21%), Positives = 30/78 (38%), Gaps = 18/78 (23%)

Query: 92  LRVIELSKNNFLGEIAKGVTNPGASQTLNLSQNSFSRTIPESIGSMKSLESIDFSANHYL 151
           L  + +S NN L E+          + L  S N  +  +PE   ++K            L
Sbjct: 286 LEELNVS-NNKLIELPALPPRL---ERLIASFNHLA-EVPELPQNLK-----------QL 329

Query: 152 NLSNNNLTG--EIPSGIQ 167
           ++  N L    +IP  ++
Sbjct: 330 HVEYNPLREFPDIPESVE 347

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	190
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	99.94
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	99.84
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	99.83
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	99.8
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	99.8
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	99.78
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	99.77
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	99.75
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	99.66
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.65
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	99.64
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.63
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	99.61
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	99.6
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.59
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	99.54
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	99.54
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	99.54
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	99.51
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.51
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	99.5
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	99.46
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	99.44
d2ifga3	156	High affinity nerve growth factor receptor, N-term	99.38
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	99.37
d2ifga3	156	High affinity nerve growth factor receptor, N-term	99.32
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	99.28
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	99.28
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	99.25
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	99.24
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	99.13
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	99.13
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	98.94
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	98.88
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	98.68
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	98.57
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	98.55
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	98.23
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	98.08
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	97.97
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	97.78
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	97.41

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=99.94  E-value=1e-26  Score=176.65  Aligned_cols=188  Identities=28%  Similarity=0.448  Sum_probs=147.2

Q ss_pred             CcceeccCCcccc--CCCcccCCCCCCcEEEccc-CcccCcCCccccCCCCccEEeccCCcccCCCcHHHHHHHHHHHh-
Q 039561            2 LQQGLKIQHKFSR--SFPTSTGALSSLESLHLHR-NHLSGAIPLSLQNGTHFEVLDLRENAFIRDVPKWIKKSLLALFM-   77 (190)
Q Consensus         2 L~~L~l~~n~l~~--~~p~~l~~l~~L~~l~l~~-n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~~~~~l~~-   77 (190)
                      ++.|+++++++++  .+|+.++++++|++|++++ |.++|.+|..+..+++|++|++++|.+.+..+..+.. +..|.. 
T Consensus        52 v~~L~L~~~~l~g~~~lp~~l~~L~~L~~L~Ls~~N~l~g~iP~~i~~L~~L~~L~Ls~N~l~~~~~~~~~~-~~~L~~l  130 (313)
T d1ogqa_          52 VNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQ-IKTLVTL  130 (313)
T ss_dssp             EEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGG-CTTCCEE
T ss_pred             EEEEECCCCCCCCCCCCChHHhcCccccccccccccccccccccccccccccchhhhccccccccccccccc-hhhhccc
Confidence            5678999999987  4788999999999999986 8888889999999999999999999988766665442 444422 


Q ss_pred             ------hcCCcccccCCCCCCcEEEccCCeecccCCccCCCCCCC-cEEEcccCcceeccCc------------------
Q 039561           78 ------MKGKAFEYSTNLNVLRVIELSKNNFLGEIAKGVTNPGAS-QTLNLSQNSFSRTIPE------------------  132 (190)
Q Consensus        78 ------~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~l~~L-~~L~l~~n~l~~~~p~------------------  132 (190)
                            ....+|..++.++.++.+++++|.+.+.+|..+..+..+ +.+++++|.+++..|.                  
T Consensus       131 ~l~~N~~~~~~p~~l~~l~~L~~l~l~~n~l~~~ip~~~~~l~~l~~~l~~~~n~l~~~~~~~~~~l~~~~l~l~~~~~~  210 (313)
T d1ogqa_         131 DFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLSRNMLE  210 (313)
T ss_dssp             ECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCCCSEEECCSSEEE
T ss_pred             ccccccccccCchhhccCcccceeeccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence                  244567788889999999999999988888877766554 5666666655533222                  


Q ss_pred             ----------------------------cccCCCCCCEEeCCCCc----------------eEEeecccccccCCccccc
Q 039561          133 ----------------------------SIGSMKSLESIDFSANH----------------YLNLSNNNLTGEIPSGIQL  168 (190)
Q Consensus       133 ----------------------------~l~~l~~L~~l~l~~N~----------------~l~l~~N~l~g~~p~~~~~  168 (190)
                                                  .+..+++|+.|++++|+                +||+++|+|+|.+|+...+
T Consensus       211 ~~~~~~~~~~~~l~~l~~~~~~l~~~~~~~~~~~~L~~L~Ls~N~l~g~iP~~l~~L~~L~~L~Ls~N~l~g~iP~~~~L  290 (313)
T d1ogqa_         211 GDASVLFGSDKNTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQGGNL  290 (313)
T ss_dssp             ECCGGGCCTTSCCSEEECCSSEECCBGGGCCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCCSTTG
T ss_pred             ccccccccccccccccccccccccccccccccccccccccCccCeecccCChHHhCCCCCCEEECcCCcccccCCCcccC
Confidence                                        22334556666666665                7999999999999987788


Q ss_pred             cccccccccCC-cccCCCCCCCC
Q 039561          169 QGFHQSRFAGS-ELCGAPFPKCL  190 (190)
Q Consensus       169 ~~l~~~~~~~n-~l~~~~~~~c~  190 (190)
                      ++++.+.+.|| .+||.|+++|.
T Consensus       291 ~~L~~l~l~~N~~l~g~plp~c~  313 (313)
T d1ogqa_         291 QRFDVSAYANNKCLCGSPLPACT  313 (313)
T ss_dssp             GGSCGGGTCSSSEEESTTSSCCC
T ss_pred             CCCCHHHhCCCccccCCCCCCCC
Confidence            99999999999 79999999994

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.84  E-value=1.1e-20  Score=140.11  Aligned_cols=159  Identities=21%  Similarity=0.225  Sum_probs=100.6

Q ss_pred             CcceeccCCccccCCCcccCCCCCCcEEEcccCcccCcCCccccCCCCccEEeccCCcccCCCcHHHHHHHHHHHhhcCC
Q 039561            2 LQQGLKIQHKFSRSFPTSTGALSSLESLHLHRNHLSGAIPLSLQNGTHFEVLDLRENAFIRDVPKWIKKSLLALFMMKGK   81 (190)
Q Consensus         2 L~~L~l~~n~l~~~~p~~l~~l~~L~~l~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~~~~~l~~~~~~   81 (190)
                      +++|++++|.+++..+..+.++++|++|++++|.++ .++ .+..+++|++|++++|++.. .+..+             
T Consensus        33 l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~L~~N~l~-~l~-~~~~l~~L~~L~Ls~N~l~~-~~~~~-------------   96 (266)
T d1p9ag_          33 TTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELT-KLQ-VDGTLPVLGTLDLSHNQLQS-LPLLG-------------   96 (266)
T ss_dssp             CCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCC-EEE-CCSCCTTCCEEECCSSCCSS-CCCCT-------------
T ss_pred             CCEEECcCCcCCCcCHHHhhcccccccccccccccc-ccc-cccccccccccccccccccc-ccccc-------------
Confidence            566677777776644455666777777777777766 444 23456667777777776543 23222             


Q ss_pred             cccccCCCCCCcEEEccCCeecccCCccCCCCCCCcEEEcccCcceeccCccccCCCCCCEEeCCCCc------------
Q 039561           82 AFEYSTNLNVLRVIELSKNNFLGEIAKGVTNPGASQTLNLSQNSFSRTIPESIGSMKSLESIDFSANH------------  149 (190)
Q Consensus        82 ~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~l~l~~N~------------  149 (190)
                           ..++.|+.|++++|.+.+..+..+..+..++.|++++|.+++..+..+..+++++.+++++|+            
T Consensus        97 -----~~l~~L~~L~l~~~~~~~~~~~~~~~l~~l~~L~l~~n~l~~l~~~~~~~l~~l~~l~l~~N~l~~~~~~~~~~l  171 (266)
T d1p9ag_          97 -----QTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGL  171 (266)
T ss_dssp             -----TTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSCCCTTTTTTC
T ss_pred             -----ccccccccccccccccceeeccccccccccccccccccccceeccccccccccchhcccccccccccCccccccc
Confidence                 235566666666666554444445555666666666666654444445555666666666665            


Q ss_pred             ----eEEeecccccccCCccc-cccccccccccCC-ccc
Q 039561          150 ----YLNLSNNNLTGEIPSGI-QLQGFHQSRFAGS-ELC  182 (190)
Q Consensus       150 ----~l~l~~N~l~g~~p~~~-~~~~l~~~~~~~n-~l~  182 (190)
                          +||+++|.|+ .+|+.+ .+..++.+.++|| .-|
T Consensus       172 ~~L~~L~Ls~N~L~-~lp~~~~~~~~L~~L~L~~Np~~C  209 (266)
T d1p9ag_         172 ENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGNPWLC  209 (266)
T ss_dssp             TTCCEEECCSSCCC-CCCTTTTTTCCCSEEECCSCCBCC
T ss_pred             cccceeecccCCCc-ccChhHCCCCCCCEEEecCCCCCC
Confidence                6788999998 888766 7888999999998 444

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=99.83  E-value=3e-21  Score=146.11  Aligned_cols=163  Identities=25%  Similarity=0.302  Sum_probs=117.9

Q ss_pred             CCcceeccC-CccccCCCcccCCCCCCcEEEcccCcccCcCCccccCCCCccEEeccCCcccCCCcHHHHHHHHHHHh--
Q 039561            1 MLQQGLKIQ-HKFSRSFPTSTGALSSLESLHLHRNHLSGAIPLSLQNGTHFEVLDLRENAFIRDVPKWIKKSLLALFM--   77 (190)
Q Consensus         1 ~L~~L~l~~-n~l~~~~p~~l~~l~~L~~l~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~~~~~l~~--   77 (190)
                      .|++|++++ |.++|.+|+.++++++|++|++++|++.+..+..+..+..|+++++++|.+.+.+|..+.. ++.+..  
T Consensus        77 ~L~~L~Ls~~N~l~g~iP~~i~~L~~L~~L~Ls~N~l~~~~~~~~~~~~~L~~l~l~~N~~~~~~p~~l~~-l~~L~~l~  155 (313)
T d1ogqa_          77 YLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISS-LPNLVGIT  155 (313)
T ss_dssp             TCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGG-CTTCCEEE
T ss_pred             cccccccccccccccccccccccccccchhhhccccccccccccccchhhhcccccccccccccCchhhcc-Ccccceee
Confidence            378889986 7888889999999999999999998887555555555555555555555554444443331 222200  


Q ss_pred             -----------------------------------------------------hcCCcccccCCCCCCcEEEccCCeecc
Q 039561           78 -----------------------------------------------------MKGKAFEYSTNLNVLRVIELSKNNFLG  104 (190)
Q Consensus        78 -----------------------------------------------------~~~~~~~~~~~~~~L~~L~l~~n~l~~  104 (190)
                                                                           ..+..+..++.++.++.+++++|.+.+
T Consensus       156 l~~n~l~~~ip~~~~~l~~l~~~l~~~~n~l~~~~~~~~~~l~~~~l~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~l~~  235 (313)
T d1ogqa_         156 FDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAF  235 (313)
T ss_dssp             CCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCCCSEEECCSSEEEECCGGGCCTTSCCSEEECCSSEECC
T ss_pred             cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence                                                                 012233445567788888998888876


Q ss_pred             cCCccCCCCCCCcEEEcccCcceeccCccccCCCCCCEEeCCCCc---------------eEEeeccc-cccc-CCcc
Q 039561          105 EIAKGVTNPGASQTLNLSQNSFSRTIPESIGSMKSLESIDFSANH---------------YLNLSNNN-LTGE-IPSG  165 (190)
Q Consensus       105 ~~p~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~l~l~~N~---------------~l~l~~N~-l~g~-~p~~  165 (190)
                      .+| .++.++.|+.|++++|.++|.+|+.++.+++|+.|++++|+               .+++++|+ ++|. +|++
T Consensus       236 ~~~-~~~~~~~L~~L~Ls~N~l~g~iP~~l~~L~~L~~L~Ls~N~l~g~iP~~~~L~~L~~l~l~~N~~l~g~plp~c  312 (313)
T d1ogqa_         236 DLG-KVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQGGNLQRFDVSAYANNKCLCGSPLPAC  312 (313)
T ss_dssp             BGG-GCCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCCSTTGGGSCGGGTCSSSEEESTTSSCC
T ss_pred             ccc-ccccccccccccCccCeecccCChHHhCCCCCCEEECcCCcccccCCCcccCCCCCHHHhCCCccccCCCCCCC
Confidence            544 57888999999999999999999999999999999999997               67788887 5664 5654

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.80  E-value=4.9e-19  Score=125.07  Aligned_cols=156  Identities=19%  Similarity=0.196  Sum_probs=128.4

Q ss_pred             cceeccCCccccCCCcccCCCCCCcEEEcccCcccCcC-CccccCCCCccEEeccCCcccCCCcHHHHHHHHHHHhhcCC
Q 039561            3 QQGLKIQHKFSRSFPTSTGALSSLESLHLHRNHLSGAI-PLSLQNGTHFEVLDLRENAFIRDVPKWIKKSLLALFMMKGK   81 (190)
Q Consensus         3 ~~L~l~~n~l~~~~p~~l~~l~~L~~l~l~~n~~~~~~-~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~~~~~l~~~~~~   81 (190)
                      ++++.++++++. +|+.+.  +++++|++++|.++..+ +..|..+++|+.|++++|.+....+..+..           
T Consensus        11 ~~v~Cs~~~L~~-iP~~lp--~~l~~L~Ls~N~i~~~~~~~~f~~l~~L~~L~L~~N~i~~~~~~~~~~-----------   76 (192)
T d1w8aa_          11 TTVDCTGRGLKE-IPRDIP--LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEG-----------   76 (192)
T ss_dssp             TEEECTTSCCSS-CCSCCC--TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTT-----------
T ss_pred             CEEEEeCCCcCc-cCCCCC--CCCCEEEeCCCCCcccccccccCCCceEeeeecccccccccccccccc-----------
Confidence            568889999986 787664  68999999999998544 456788999999999999987666655544           


Q ss_pred             cccccCCCCCCcEEEccCCeecccCCccCCCCCCCcEEEcccCcceeccCccccCCCCCCEEeCCCCc------------
Q 039561           82 AFEYSTNLNVLRVIELSKNNFLGEIAKGVTNPGASQTLNLSQNSFSRTIPESIGSMKSLESIDFSANH------------  149 (190)
Q Consensus        82 ~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~l~l~~N~------------  149 (190)
                             ++.|++|++++|++....+.+|.++++|++|++++|.|++..+..|..+++|+++++++|.            
T Consensus        77 -------~~~L~~L~Ls~N~l~~l~~~~F~~l~~L~~L~L~~N~l~~i~~~~f~~l~~L~~l~L~~N~~~~~~~~~~~~~  149 (192)
T d1w8aa_          77 -------ASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCNCHLAWFAE  149 (192)
T ss_dssp             -------CTTCCEEECCSCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCSGGGHHHHH
T ss_pred             -------ccccceeeeccccccccCHHHHhCCCcccccccCCccccccCHHHhcCCcccccccccccccccccchHHHhh
Confidence                   8899999999999997777889999999999999999997778889999999999999997            


Q ss_pred             ---eEEeecccccccCCccccccccccccccCCcc
Q 039561          150 ---YLNLSNNNLTGEIPSGIQLQGFHQSRFAGSEL  181 (190)
Q Consensus       150 ---~l~l~~N~l~g~~p~~~~~~~l~~~~~~~n~l  181 (190)
                         ...+..|.+....|..  ++.+...++..|.+
T Consensus       150 ~l~~~~l~~~~~~c~~p~~--l~~~~l~~L~~n~l  182 (192)
T d1w8aa_         150 WLRKKSLNGGAARCGAPSK--VRDVQIKDLPHSEF  182 (192)
T ss_dssp             HHHHHCCSGGGCBBCSSTT--TTTSBGGGSCTTTC
T ss_pred             hhhhhcccCCCeEeCCChh--hcCCEeeecCHhhC
Confidence               4556677777666754  45566677777744

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.80  E-value=4.2e-19  Score=131.45  Aligned_cols=161  Identities=20%  Similarity=0.198  Sum_probs=135.2

Q ss_pred             CcceeccCCccccCCCcccCCCCCCcEEEcccCcccCcCCccccCCCCccEEeccCCcccCCCcHHHHHHHHHHHhhcCC
Q 039561            2 LQQGLKIQHKFSRSFPTSTGALSSLESLHLHRNHLSGAIPLSLQNGTHFEVLDLRENAFIRDVPKWIKKSLLALFMMKGK   81 (190)
Q Consensus         2 L~~L~l~~n~l~~~~p~~l~~l~~L~~l~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~~~~~l~~~~~~   81 (190)
                      +.+++.++++++. +|+.+.  +++++|++++|.+++..+..|..+++|++|++++|.+.. +|.               
T Consensus        12 ~~~v~C~~~~L~~-iP~~lp--~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~L~~N~l~~-l~~---------------   72 (266)
T d1p9ag_          12 HLEVNCDKRNLTA-LPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTK-LQV---------------   72 (266)
T ss_dssp             CCEEECTTSCCSS-CCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCE-EEC---------------
T ss_pred             CeEEEccCCCCCe-eCcCcC--cCCCEEECcCCcCCCcCHHHhhccccccccccccccccc-ccc---------------
Confidence            3456888899986 787664  579999999999995555678899999999999999753 332               


Q ss_pred             cccccCCCCCCcEEEccCCeecccCCccCCCCCCCcEEEcccCcceeccCccccCCCCCCEEeCCCCc------------
Q 039561           82 AFEYSTNLNVLRVIELSKNNFLGEIAKGVTNPGASQTLNLSQNSFSRTIPESIGSMKSLESIDFSANH------------  149 (190)
Q Consensus        82 ~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~l~l~~N~------------  149 (190)
                          ++.+++|++|++++|++. ..+..+..++.|+.|++++|.+.+..+..+..+.+++.+++++|.            
T Consensus        73 ----~~~l~~L~~L~Ls~N~l~-~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~l~~L~l~~n~l~~l~~~~~~~l  147 (266)
T d1p9ag_          73 ----DGTLPVLGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPT  147 (266)
T ss_dssp             ----CSCCTTCCEEECCSSCCS-SCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTC
T ss_pred             ----cccccccccccccccccc-ccccccccccccccccccccccceeeccccccccccccccccccccceecccccccc
Confidence                123889999999999998 567788999999999999999987777788899999999999997            


Q ss_pred             ----eEEeecccccccCCccc-cccccccccccCCcccCCCC
Q 039561          150 ----YLNLSNNNLTGEIPSGI-QLQGFHQSRFAGSELCGAPF  186 (190)
Q Consensus       150 ----~l~l~~N~l~g~~p~~~-~~~~l~~~~~~~n~l~~~~~  186 (190)
                          ++++++|.+++..|..+ .+.+++.+++++|.+...|.
T Consensus       148 ~~l~~l~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~L~~lp~  189 (266)
T d1p9ag_         148 PKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLYTIPK  189 (266)
T ss_dssp             TTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCCCCCT
T ss_pred             ccchhcccccccccccCccccccccccceeecccCCCcccCh
Confidence                79999999996555555 68999999999998887764

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.78  E-value=1.8e-18  Score=129.10  Aligned_cols=177  Identities=23%  Similarity=0.218  Sum_probs=106.9

Q ss_pred             CcceeccCCccccCCCcccCCCCCCcEEEcccCcccCcCCccccCCCCccEEeccCCcccCCC-cHHHHHHHHHHHhhc-
Q 039561            2 LQQGLKIQHKFSRSFPTSTGALSSLESLHLHRNHLSGAIPLSLQNGTHFEVLDLRENAFIRDV-PKWIKKSLLALFMMK-   79 (190)
Q Consensus         2 L~~L~l~~n~l~~~~p~~l~~l~~L~~l~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~-p~~~~~~~~~l~~~~-   79 (190)
                      +++|++++|.++...+..+.++++|+++++++|.+....+..+...+.++.++...+.....+ +..+. .+++|..+. 
T Consensus        34 ~~~L~Ls~N~i~~i~~~~f~~l~~L~~L~ls~n~l~~i~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~-~l~~L~~L~l  112 (284)
T d1ozna_          34 SQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFH-GLGRLHTLHL  112 (284)
T ss_dssp             CSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTT-TCTTCCEEEC
T ss_pred             CCEEECcCCcCCCCCHHHhhccccccccccccccccccccccccccccccccccccccccccccchhhc-ccccCCEEec
Confidence            466777777777644445777777777777777766433344444444555444332222222 22222 133332210 


Q ss_pred             ------CCcccccCCCCCCcEEEccCCeecccCCccCCCCCCCcEEEcccCcceeccCccccCCCCCCEEeCCCCc----
Q 039561           80 ------GKAFEYSTNLNVLRVIELSKNNFLGEIAKGVTNPGASQTLNLSQNSFSRTIPESIGSMKSLESIDFSANH----  149 (190)
Q Consensus        80 ------~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~l~l~~N~----  149 (190)
                            ...+..+.....|+.+++++|++++..+..+..+++|+.|++++|.+++..+..+..+++|+.+++++|.    
T Consensus       113 ~~n~~~~~~~~~~~~~~~L~~l~l~~N~l~~i~~~~f~~~~~L~~L~l~~N~l~~l~~~~f~~l~~L~~l~l~~N~l~~i  192 (284)
T d1ozna_         113 DRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHV  192 (284)
T ss_dssp             TTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEE
T ss_pred             CCcccccccccccchhcccchhhhccccccccChhHhccccchhhcccccCcccccchhhhccccccchhhhhhcccccc
Confidence                  0112233346667777777777775445667777777788888777776666677777778877777776    


Q ss_pred             ------------eEEeecccccccCCccc-cccccccccccCC
Q 039561          150 ------------YLNLSNNNLTGEIPSGI-QLQGFHQSRFAGS  179 (190)
Q Consensus       150 ------------~l~l~~N~l~g~~p~~~-~~~~l~~~~~~~n  179 (190)
                                  ++|+++|.+.+..|..+ .+.+++.+.+++|
T Consensus       193 ~~~~f~~l~~L~~L~l~~N~i~~~~~~~~~~~~~L~~L~l~~N  235 (284)
T d1ozna_         193 HPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDN  235 (284)
T ss_dssp             CTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSS
T ss_pred             ChhHhhhhhhcccccccccccccccccccccccccCEEEecCC
Confidence                        78888888875444444 6777777777777

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.77  E-value=1.6e-18  Score=130.50  Aligned_cols=178  Identities=21%  Similarity=0.287  Sum_probs=113.6

Q ss_pred             CcceeccCCccccCCCcccCCCCCCcEEEcccCcccCcCCccccCCCCccEEeccCCcccCCCcHHHHHHHHHH------
Q 039561            2 LQQGLKIQHKFSRSFPTSTGALSSLESLHLHRNHLSGAIPLSLQNGTHFEVLDLRENAFIRDVPKWIKKSLLAL------   75 (190)
Q Consensus         2 L~~L~l~~n~l~~~~p~~l~~l~~L~~l~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~~~~~l------   75 (190)
                      +++|++++|+++...+..|.++++|+++++++|.++...|..|..++.|+++++++|++.. +|......+..+      
T Consensus        33 l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~l~~n~~~~i~~~~f~~l~~L~~L~l~~n~l~~-l~~~~~~~l~~L~~~~n~  111 (305)
T d1xkua_          33 TALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKE-LPEKMPKTLQELRVHENE  111 (305)
T ss_dssp             CCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCSB-CCSSCCTTCCEEECCSSC
T ss_pred             CCEEECcCCcCCCcChhHhhccccccccccccccccccchhhhhCCCccCEecccCCccCc-Cccchhhhhhhhhccccc
Confidence            6889999999998444578999999999999999996667788899999999999998653 332221111111      


Q ss_pred             ---------------Hhh---------cCCcccccCCCCCCcEEEccCCeecccCCccCCCCCCCcEEEcccCcceeccC
Q 039561           76 ---------------FMM---------KGKAFEYSTNLNVLRVIELSKNNFLGEIAKGVTNPGASQTLNLSQNSFSRTIP  131 (190)
Q Consensus        76 ---------------~~~---------~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p  131 (190)
                                     ..+         .......+..++.++++++++|.+. .+|..+  .++++.|++++|.+++..+
T Consensus       112 l~~l~~~~~~~~~~~~~l~~~~n~~~~~~~~~~~~~~l~~L~~l~l~~n~l~-~l~~~~--~~~L~~L~l~~n~~~~~~~  188 (305)
T d1xkua_         112 ITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNIT-TIPQGL--PPSLTELHLDGNKITKVDA  188 (305)
T ss_dssp             CCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCC-SCCSSC--CTTCSEEECTTSCCCEECT
T ss_pred             hhhhhhhhhhccccccccccccccccccCCCccccccccccCccccccCCcc-ccCccc--CCccCEEECCCCcCCCCCh
Confidence                           000         0011123334556666666666665 344332  3566666666666665555


Q ss_pred             ccccCCCCCCEEeCCCCc----------------eEEeecccccccCCccc-cccccccccccCCcccCC
Q 039561          132 ESIGSMKSLESIDFSANH----------------YLNLSNNNLTGEIPSGI-QLQGFHQSRFAGSELCGA  184 (190)
Q Consensus       132 ~~l~~l~~L~~l~l~~N~----------------~l~l~~N~l~g~~p~~~-~~~~l~~~~~~~n~l~~~  184 (190)
                      ..+..++.++.|++++|.                +|++++|.|+ .+|+.+ .+.+|+.+.+++|.+...
T Consensus       189 ~~~~~~~~l~~L~~s~n~l~~~~~~~~~~l~~L~~L~L~~N~L~-~lp~~l~~l~~L~~L~Ls~N~i~~i  257 (305)
T d1xkua_         189 ASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNISAI  257 (305)
T ss_dssp             GGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCS-SCCTTTTTCSSCCEEECCSSCCCCC
T ss_pred             hHhhccccccccccccccccccccccccccccceeeeccccccc-ccccccccccCCCEEECCCCccCcc
Confidence            566666666666666664                5666666666 556554 566666666666655544

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.75  E-value=3.1e-18  Score=127.73  Aligned_cols=140  Identities=20%  Similarity=0.202  Sum_probs=71.6

Q ss_pred             CCccccCCCcccCCCCCCcEEEcccCcccCcCCccccCCCCccEEeccCCcccCCCcHHHHHHHHHHHhh-------cCC
Q 039561            9 QHKFSRSFPTSTGALSSLESLHLHRNHLSGAIPLSLQNGTHFEVLDLRENAFIRDVPKWIKKSLLALFMM-------KGK   81 (190)
Q Consensus         9 ~n~l~~~~p~~l~~l~~L~~l~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~~~~~l~~~-------~~~   81 (190)
                      .+.++...+..+.++++|+++++++|.+....+..+...+.|+.+++++|.+....+..+.. +..+..+       ...
T Consensus        90 ~~~~~~l~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~l~l~~N~l~~i~~~~f~~-~~~L~~L~l~~N~l~~l  168 (284)
T d1ozna_          90 NAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRD-LGNLTHLFLHGNRISSV  168 (284)
T ss_dssp             CTTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTT-CTTCCEEECCSSCCCEE
T ss_pred             ccccccccchhhcccccCCEEecCCcccccccccccchhcccchhhhccccccccChhHhcc-ccchhhcccccCccccc
Confidence            44555544556777777777777777776444555666677777777777765433333322 1111110       000


Q ss_pred             cccccCCCCCCcEEEccCCeecccCCccCCCCCCCcEEEcccCcceeccCccccCCCCCCEEeCCCCc
Q 039561           82 AFEYSTNLNVLRVIELSKNNFLGEIAKGVTNPGASQTLNLSQNSFSRTIPESIGSMKSLESIDFSANH  149 (190)
Q Consensus        82 ~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~l~l~~N~  149 (190)
                      .+.++.++++|+++++++|++.+..|..|..+++|++|++++|.+++..+..+..+++|+.+++++|.
T Consensus       169 ~~~~f~~l~~L~~l~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~i~~~~~~~~~~~~~L~~L~l~~N~  236 (284)
T d1ozna_         169 PERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNP  236 (284)
T ss_dssp             CTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSC
T ss_pred             chhhhccccccchhhhhhccccccChhHhhhhhhcccccccccccccccccccccccccCEEEecCCC
Confidence            01222334445555555555544444445555555555555555544444444445555544444443

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.66  E-value=2e-16  Score=111.40  Aligned_cols=103  Identities=19%  Similarity=0.238  Sum_probs=86.9

Q ss_pred             CcEEEcccCcccCcCCccccCCCCccEEeccCCcccCCCc-HHHHHHHHHHHhhcCCcccccCCCCCCcEEEccCCeecc
Q 039561           26 LESLHLHRNHLSGAIPLSLQNGTHFEVLDLRENAFIRDVP-KWIKKSLLALFMMKGKAFEYSTNLNVLRVIELSKNNFLG  104 (190)
Q Consensus        26 L~~l~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p-~~~~~~~~~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~  104 (190)
                      .+.++.++++++ .+|..+.  +.+++|++++|.+....+ ..+.                  .+++|++|++++|.+..
T Consensus        10 ~~~v~Cs~~~L~-~iP~~lp--~~l~~L~Ls~N~i~~~~~~~~f~------------------~l~~L~~L~L~~N~i~~   68 (192)
T d1w8aa_          10 GTTVDCTGRGLK-EIPRDIP--LHTTELLLNDNELGRISSDGLFG------------------RLPHLVKLELKRNQLTG   68 (192)
T ss_dssp             TTEEECTTSCCS-SCCSCCC--TTCSEEECCSCCCCSBCCSCSGG------------------GCTTCCEEECCSSCCCC
T ss_pred             CCEEEEeCCCcC-ccCCCCC--CCCCEEEeCCCCCcccccccccC------------------CCceEeeeecccccccc
Confidence            468999999999 7887663  689999999999876443 3333                  38999999999999998


Q ss_pred             cCCccCCCCCCCcEEEcccCcceeccCccccCCCCCCEEeCCCCc
Q 039561          105 EIAKGVTNPGASQTLNLSQNSFSRTIPESIGSMKSLESIDFSANH  149 (190)
Q Consensus       105 ~~p~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~l~l~~N~  149 (190)
                      ..+..+..++.|+.|++++|.+++..+..|..+++|+.|++++|+
T Consensus        69 ~~~~~~~~~~~L~~L~Ls~N~l~~l~~~~F~~l~~L~~L~L~~N~  113 (192)
T d1w8aa_          69 IEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQ  113 (192)
T ss_dssp             BCTTTTTTCTTCCEEECCSCCCCEECSSSSTTCTTCCEEECCSSC
T ss_pred             ccccccccccccceeeeccccccccCHHHHhCCCcccccccCCcc
Confidence            888899999999999999999997777889999999977765554

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.65  E-value=1.4e-15  Score=107.62  Aligned_cols=146  Identities=18%  Similarity=0.274  Sum_probs=86.8

Q ss_pred             CcceeccCCccccCCCcccCCCCCCcEEEcccCcccCcCCccccCCCCccEEeccCCcccCCCcHHHHHHHHHHHhhcCC
Q 039561            2 LQQGLKIQHKFSRSFPTSTGALSSLESLHLHRNHLSGAIPLSLQNGTHFEVLDLRENAFIRDVPKWIKKSLLALFMMKGK   81 (190)
Q Consensus         2 L~~L~l~~n~l~~~~p~~l~~l~~L~~l~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~~~~~l~~~~~~   81 (190)
                      +++|++++|.++. +. .+..+++|++|++++|.+++ ++. +..+++|++|++++|.+.. ++. +..           
T Consensus        42 l~~L~l~~~~i~~-l~-~l~~l~nL~~L~Ls~N~l~~-~~~-l~~l~~L~~L~l~~n~~~~-~~~-l~~-----------  104 (199)
T d2omxa2          42 VTTLQADRLGIKS-ID-GVEYLNNLTQINFSNNQLTD-ITP-LKNLTKLVDILMNNNQIAD-ITP-LAN-----------  104 (199)
T ss_dssp             CCEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCCC-CGG-GTTCTTCCEEECCSSCCCC-CGG-GTT-----------
T ss_pred             CCEEECCCCCCCC-cc-ccccCCCcCcCccccccccC-ccc-ccCCccccccccccccccc-ccc-ccc-----------
Confidence            5667777777765 32 46677788888888887773 332 6677778888887777543 332 222           


Q ss_pred             cccccCCCCCCcEEEccCCeecccCCccCCCCCCCcEEEcccCcceeccCccccCCCCCCEEeCCCCceEEeeccccccc
Q 039561           82 AFEYSTNLNVLRVIELSKNNFLGEIAKGVTNPGASQTLNLSQNSFSRTIPESIGSMKSLESIDFSANHYLNLSNNNLTGE  161 (190)
Q Consensus        82 ~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~l~l~~N~~l~l~~N~l~g~  161 (190)
                             ++.|+.++++++.+.. . +.+..+++|+.+++++|.+. .++ .+..+++|+.++        +++|.++ .
T Consensus       105 -------l~~L~~L~l~~~~~~~-~-~~~~~l~~L~~L~l~~n~l~-~~~-~l~~~~~L~~L~--------l~~n~l~-~  164 (199)
T d2omxa2         105 -------LTNLTGLTLFNNQITD-I-DPLKNLTNLNRLELSSNTIS-DIS-ALSGLTSLQQLN--------FSSNQVT-D  164 (199)
T ss_dssp             -------CTTCSEEECCSSCCCC-C-GGGTTCTTCSEEECCSSCCC-CCG-GGTTCTTCSEEE--------CCSSCCC-C
T ss_pred             -------cccccccccccccccc-c-cccchhhhhHHhhhhhhhhc-ccc-cccccccccccc--------ccccccc-C
Confidence                   5666666666666542 2 23555666666666666665 232 355566666444        4445554 3


Q ss_pred             CCccccccccccccccCCcccCC
Q 039561          162 IPSGIQLQGFHQSRFAGSELCGA  184 (190)
Q Consensus       162 ~p~~~~~~~l~~~~~~~n~l~~~  184 (190)
                      ++...++.+++.+++++|.+...
T Consensus       165 l~~l~~l~~L~~L~ls~N~i~~i  187 (199)
T d2omxa2         165 LKPLANLTTLERLDISSNKVSDI  187 (199)
T ss_dssp             CGGGTTCTTCCEEECCSSCCCCC
T ss_pred             CccccCCCCCCEEECCCCCCCCC
Confidence            33333556666666666655543

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.64  E-value=2.8e-16  Score=107.83  Aligned_cols=119  Identities=12%  Similarity=0.120  Sum_probs=57.9

Q ss_pred             cceeccCCccccCCCcccCCCCCCcEEEcccCcccCcCCccccCCCCccEEeccCCcccCCCcHHHHHHHHHHHhhcCCc
Q 039561            3 QQGLKIQHKFSRSFPTSTGALSSLESLHLHRNHLSGAIPLSLQNGTHFEVLDLRENAFIRDVPKWIKKSLLALFMMKGKA   82 (190)
Q Consensus         3 ~~L~l~~n~l~~~~p~~l~~l~~L~~l~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~~~~~l~~~~~~~   82 (190)
                      ++|++++|+++. ++..+..+++|++|++++|.++ .++ .+..+++|++|++++|.+....+..+..            
T Consensus        21 r~L~L~~n~I~~-i~~~~~~l~~L~~L~Ls~N~i~-~l~-~~~~l~~L~~L~ls~N~i~~l~~~~~~~------------   85 (162)
T d1a9na_          21 RELDLRGYKIPV-IENLGATLDQFDAIDFSDNEIR-KLD-GFPLLRRLKTLLVNNNRICRIGEGLDQA------------   85 (162)
T ss_dssp             EEEECTTSCCCS-CCCGGGGTTCCSEEECCSSCCC-EEC-CCCCCSSCCEEECCSSCCCEECSCHHHH------------
T ss_pred             cEEECCCCCCCc-cCccccccccCCEEECCCCCCC-ccC-CcccCcchhhhhcccccccCCCcccccc------------
Confidence            455555555554 3433344555555555555555 332 3445555555555555544322222223            


Q ss_pred             ccccCCCCCCcEEEccCCeecccCC--ccCCCCCCCcEEEcccCcceeccCc----cccCCCCCCEEe
Q 039561           83 FEYSTNLNVLRVIELSKNNFLGEIA--KGVTNPGASQTLNLSQNSFSRTIPE----SIGSMKSLESID  144 (190)
Q Consensus        83 ~~~~~~~~~L~~L~l~~n~l~~~~p--~~~~~l~~L~~L~l~~n~l~~~~p~----~l~~l~~L~~l~  144 (190)
                            ++++++|++++|++.. ++  ..+..+++|+++++++|.++ ..|.    .+..+++|+.||
T Consensus        86 ------l~~L~~L~L~~N~i~~-~~~l~~l~~l~~L~~L~l~~N~i~-~~~~~r~~~i~~lp~L~~LD  145 (162)
T d1a9na_          86 ------LPDLTELILTNNSLVE-LGDLDPLASLKSLTYLCILRNPVT-NKKHYRLYVIYKVPQVRVLD  145 (162)
T ss_dssp             ------CTTCCEEECCSCCCCC-GGGGGGGGGCTTCCEEECCSSGGG-GSTTHHHHHHHHCTTCSEET
T ss_pred             ------ccccccceeccccccc-cccccccccccccchhhcCCCccc-cccchHHHHHHHCCCcCeeC
Confidence                  5555555555555542 22  23445555555555555554 2332    244455555443

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.63  E-value=1.3e-15  Score=108.68  Aligned_cols=148  Identities=20%  Similarity=0.310  Sum_probs=86.7

Q ss_pred             CCcceeccCCccccCCCcccCCCCCCcEEEcccCcccCcCCccccCCCCccEEeccCCcccCCCcHHHHHHHHHHHhhcC
Q 039561            1 MLQQGLKIQHKFSRSFPTSTGALSSLESLHLHRNHLSGAIPLSLQNGTHFEVLDLRENAFIRDVPKWIKKSLLALFMMKG   80 (190)
Q Consensus         1 ~L~~L~l~~n~l~~~~p~~l~~l~~L~~l~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~~~~~l~~~~~   80 (190)
                      +|+.|++++|.++. ++ .+..+++|++|++++|.++ .++ .+..+++|++|++++|++.+ +|. +..          
T Consensus        47 ~L~~L~l~~~~i~~-l~-~l~~l~~L~~L~L~~n~i~-~l~-~~~~l~~L~~L~l~~n~i~~-l~~-l~~----------  110 (210)
T d1h6ta2          47 SIDQIIANNSDIKS-VQ-GIQYLPNVTKLFLNGNKLT-DIK-PLANLKNLGWLFLDENKVKD-LSS-LKD----------  110 (210)
T ss_dssp             TCCEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCC-CCG-GGTTCTTCCEEECCSSCCCC-GGG-GTT----------
T ss_pred             CccEEECcCCCCCC-ch-hHhhCCCCCEEeCCCcccc-Ccc-ccccCccccccccccccccc-ccc-ccc----------
Confidence            36778888888876 33 4778888888888888888 444 35678888888888888653 332 322          


Q ss_pred             CcccccCCCCCCcEEEccCCeecccCCccCCCCCCCcEEEcccCcceeccCccccCCCCCCEEeCCCCc-----------
Q 039561           81 KAFEYSTNLNVLRVIELSKNNFLGEIAKGVTNPGASQTLNLSQNSFSRTIPESIGSMKSLESIDFSANH-----------  149 (190)
Q Consensus        81 ~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~l~l~~N~-----------  149 (190)
                              +++|+.|++++|.+. .+ ..+..++.++.++++.|.+++  +..+..+++|+.+++++|+           
T Consensus       111 --------l~~L~~L~l~~~~~~-~~-~~l~~l~~l~~l~~~~n~l~~--~~~~~~l~~L~~l~l~~n~l~~i~~l~~l~  178 (210)
T d1h6ta2         111 --------LKKLKSLSLEHNGIS-DI-NGLVHLPQLESLYLGNNKITD--ITVLSRLTKLDTLSLEDNQISDIVPLAGLT  178 (210)
T ss_dssp             --------CTTCCEEECTTSCCC-CC-GGGGGCTTCCEEECCSSCCCC--CGGGGGCTTCSEEECCSSCCCCCGGGTTCT
T ss_pred             --------ccccccccccccccc-cc-ccccccccccccccccccccc--cccccccccccccccccccccccccccCCC
Confidence                    555555555555543 22 234445555555555555542  2233444555544443333           


Q ss_pred             ---eEEeecccccccCCcccccccccccccc
Q 039561          150 ---YLNLSNNNLTGEIPSGIQLQGFHQSRFA  177 (190)
Q Consensus       150 ---~l~l~~N~l~g~~p~~~~~~~l~~~~~~  177 (190)
                         .|++++|.++ .+|....+.+|+.+++.
T Consensus       179 ~L~~L~Ls~N~i~-~l~~l~~l~~L~~L~Ls  208 (210)
T d1h6ta2         179 KLQNLYLSKNHIS-DLRALAGLKNLDVLELF  208 (210)
T ss_dssp             TCCEEECCSSCCC-BCGGGTTCTTCSEEEEE
T ss_pred             CCCEEECCCCCCC-CChhhcCCCCCCEEEcc
Confidence               4445566665 45543355555555543

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.61  E-value=8.8e-16  Score=100.67  Aligned_cols=118  Identities=23%  Similarity=0.220  Sum_probs=85.5

Q ss_pred             cceeccCCccccCCCcccCCCCCCcEEEcccCcccCcCCccccCCCCccEEeccCCcccCCCcHHHHHHHHHHHhhcCCc
Q 039561            3 QQGLKIQHKFSRSFPTSTGALSSLESLHLHRNHLSGAIPLSLQNGTHFEVLDLRENAFIRDVPKWIKKSLLALFMMKGKA   82 (190)
Q Consensus         3 ~~L~l~~n~l~~~~p~~l~~l~~L~~l~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~~~~~l~~~~~~~   82 (190)
                      |+|++++|+++. ++ .+..+++|++|++++|.++ .+|..+..+++|+.|++++|.+.. +|. +..            
T Consensus         1 R~L~Ls~n~l~~-l~-~l~~l~~L~~L~ls~N~l~-~lp~~~~~l~~L~~L~l~~N~i~~-l~~-~~~------------   63 (124)
T d1dcea3           1 RVLHLAHKDLTV-LC-HLEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALEN-VDG-VAN------------   63 (124)
T ss_dssp             SEEECTTSCCSS-CC-CGGGGTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCC-CGG-GTT------------
T ss_pred             CEEEcCCCCCCC-Cc-ccccCCCCCEEECCCCccC-cchhhhhhhhcccccccccccccc-cCc-ccc------------
Confidence            578899999885 44 5788889999999999988 677778888889999999988764 332 333            


Q ss_pred             ccccCCCCCCcEEEccCCeecccC-CccCCCCCCCcEEEcccCcceecc--Cc-cccCCCCCCEE
Q 039561           83 FEYSTNLNVLRVIELSKNNFLGEI-AKGVTNPGASQTLNLSQNSFSRTI--PE-SIGSMKSLESI  143 (190)
Q Consensus        83 ~~~~~~~~~L~~L~l~~n~l~~~~-p~~~~~l~~L~~L~l~~n~l~~~~--p~-~l~~l~~L~~l  143 (190)
                            +++|+++++++|++.... ...+..+++|+.+++++|.+++..  +. ....+++|+.+
T Consensus        64 ------l~~L~~L~l~~N~i~~~~~~~~l~~~~~L~~L~l~~N~i~~~~~~~~~l~~~lp~L~~L  122 (124)
T d1dcea3          64 ------LPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSI  122 (124)
T ss_dssp             ------CSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCTTCSEE
T ss_pred             ------ccccCeEECCCCccCCCCCchhhcCCCCCCEEECCCCcCCcCccHHHHHHHHCcCcceE
Confidence                  888888888888887322 245677888888888888887321  11 22345666554

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.60  E-value=1.2e-14  Score=108.96  Aligned_cols=177  Identities=18%  Similarity=0.197  Sum_probs=117.5

Q ss_pred             cceeccCCccccCCCcccCCCCCCcEEEcccCcccCcCCccccCCCCccEEeccCCcccCCCcHHHHHHHHHHHhhc--C
Q 039561            3 QQGLKIQHKFSRSFPTSTGALSSLESLHLHRNHLSGAIPLSLQNGTHFEVLDLRENAFIRDVPKWIKKSLLALFMMK--G   80 (190)
Q Consensus         3 ~~L~l~~n~l~~~~p~~l~~l~~L~~l~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~~~~~l~~~~--~   80 (190)
                      ++++-+++.++. +|..+.  +++++|++++|+++...+..|..+++|++|++++|.+....|..+.. ++.|..+.  +
T Consensus        13 ~~~~C~~~~L~~-lP~~l~--~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~l~~n~~~~i~~~~f~~-l~~L~~L~l~~   88 (305)
T d1xkua_          13 RVVQCSDLGLEK-VPKDLP--PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAP-LVKLERLYLSK   88 (305)
T ss_dssp             TEEECTTSCCCS-CCCSCC--TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTT-CTTCCEEECCS
T ss_pred             CEEEecCCCCCc-cCCCCC--CCCCEEECcCCcCCCcChhHhhccccccccccccccccccchhhhhC-CCccCEecccC
Confidence            456677777875 777664  68999999999999433457889999999999999987655655543 44442221  1


Q ss_pred             C----ccccc----------------------CCCCCCcEEEccCCeec--ccCCccCCCCCCCcEEEcccCcceeccCc
Q 039561           81 K----AFEYS----------------------TNLNVLRVIELSKNNFL--GEIAKGVTNPGASQTLNLSQNSFSRTIPE  132 (190)
Q Consensus        81 ~----~~~~~----------------------~~~~~L~~L~l~~n~l~--~~~p~~~~~l~~L~~L~l~~n~l~~~~p~  132 (190)
                      .    +|..+                      ........++...|...  ...+..+..+++|+.+++++|.++ .+|.
T Consensus        89 n~l~~l~~~~~~~l~~L~~~~n~l~~l~~~~~~~~~~~~~l~~~~n~~~~~~~~~~~~~~l~~L~~l~l~~n~l~-~l~~  167 (305)
T d1xkua_          89 NQLKELPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNIT-TIPQ  167 (305)
T ss_dssp             SCCSBCCSSCCTTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCC-SCCS
T ss_pred             CccCcCccchhhhhhhhhccccchhhhhhhhhhccccccccccccccccccCCCccccccccccCccccccCCcc-ccCc
Confidence            0    11110                      01222223333332211  112333455677788888888776 4554


Q ss_pred             cccCCCCCCEEeCCCCc----------------eEEeecccccccCCccc-cccccccccccCCcccCCCC
Q 039561          133 SIGSMKSLESIDFSANH----------------YLNLSNNNLTGEIPSGI-QLQGFHQSRFAGSELCGAPF  186 (190)
Q Consensus       133 ~l~~l~~L~~l~l~~N~----------------~l~l~~N~l~g~~p~~~-~~~~l~~~~~~~n~l~~~~~  186 (190)
                      .+  .++|+.+++++|.                ++++++|.+.+..|..+ .+.+|+.+.+++|.++..|.
T Consensus       168 ~~--~~~L~~L~l~~n~~~~~~~~~~~~~~~l~~L~~s~n~l~~~~~~~~~~l~~L~~L~L~~N~L~~lp~  236 (305)
T d1xkua_         168 GL--PPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVKVPG  236 (305)
T ss_dssp             SC--CTTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCSSCCT
T ss_pred             cc--CCccCEEECCCCcCCCCChhHhhccccccccccccccccccccccccccccceeeeccccccccccc
Confidence            33  5678888888886                79999999996666655 78999999999998888764

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.59  E-value=3.2e-15  Score=105.67  Aligned_cols=143  Identities=17%  Similarity=0.308  Sum_probs=108.7

Q ss_pred             eccCCccccCCCcccCCCCCCcEEEcccCcccCcCCccccCCCCccEEeccCCcccCCCcHHHHHHHHHHHhhcCCcccc
Q 039561            6 LKIQHKFSRSFPTSTGALSSLESLHLHRNHLSGAIPLSLQNGTHFEVLDLRENAFIRDVPKWIKKSLLALFMMKGKAFEY   85 (190)
Q Consensus         6 ~l~~n~l~~~~p~~l~~l~~L~~l~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~~~~~l~~~~~~~~~~   85 (190)
                      .+..+.+++.++  ...++++++|+++++.++ .++ .+..+++|++|++++|.+.+..|  +..               
T Consensus        24 ~l~~~~~~~~~~--~~~l~~l~~L~l~~~~i~-~l~-~l~~l~nL~~L~Ls~N~l~~~~~--l~~---------------   82 (199)
T d2omxa2          24 VLGKTNVTDTVS--QTDLDQVTTLQADRLGIK-SID-GVEYLNNLTQINFSNNQLTDITP--LKN---------------   82 (199)
T ss_dssp             HTTCSSTTSEEC--HHHHTTCCEEECTTSCCC-CCT-TGGGCTTCCEEECCSSCCCCCGG--GTT---------------
T ss_pred             HhCCCCCCCccC--HHHhcCCCEEECCCCCCC-Ccc-ccccCCCcCcCccccccccCccc--ccC---------------
Confidence            455556665332  346789999999999998 454 46788999999999999765322  433               


Q ss_pred             cCCCCCCcEEEccCCeecccCCccCCCCCCCcEEEcccCcceeccCccccCCCCCCEEeCCCCceEEeecccccccCCcc
Q 039561           86 STNLNVLRVIELSKNNFLGEIAKGVTNPGASQTLNLSQNSFSRTIPESIGSMKSLESIDFSANHYLNLSNNNLTGEIPSG  165 (190)
Q Consensus        86 ~~~~~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~l~l~~N~~l~l~~N~l~g~~p~~  165 (190)
                         +++|++|++++|.+. .++ .+..++.|+.+++++|.+.. . ..+..+++|+.++        +++|.+. .+|..
T Consensus        83 ---l~~L~~L~l~~n~~~-~~~-~l~~l~~L~~L~l~~~~~~~-~-~~~~~l~~L~~L~--------l~~n~l~-~~~~l  146 (199)
T d2omxa2          83 ---LTKLVDILMNNNQIA-DIT-PLANLTNLTGLTLFNNQITD-I-DPLKNLTNLNRLE--------LSSNTIS-DISAL  146 (199)
T ss_dssp             ---CTTCCEEECCSSCCC-CCG-GGTTCTTCSEEECCSSCCCC-C-GGGTTCTTCSEEE--------CCSSCCC-CCGGG
T ss_pred             ---Ccccccccccccccc-ccc-cccccccccccccccccccc-c-cccchhhhhHHhh--------hhhhhhc-ccccc
Confidence               899999999999986 444 38889999999999998873 2 3477888888555        6677776 55554


Q ss_pred             ccccccccccccCCcccCCC
Q 039561          166 IQLQGFHQSRFAGSELCGAP  185 (190)
Q Consensus       166 ~~~~~l~~~~~~~n~l~~~~  185 (190)
                      ....+++.+.+.+|.+++.+
T Consensus       147 ~~~~~L~~L~l~~n~l~~l~  166 (199)
T d2omxa2         147 SGLTSLQQLNFSSNQVTDLK  166 (199)
T ss_dssp             TTCTTCSEEECCSSCCCCCG
T ss_pred             cccccccccccccccccCCc
Confidence            57889999999999777664

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.54  E-value=5.9e-14  Score=100.90  Aligned_cols=165  Identities=16%  Similarity=0.222  Sum_probs=98.7

Q ss_pred             CCcceeccCCccccCCCcccCCCCCCcEEEcccCcccCcCCccccCCCCccEEeccCCcccCCCcHHHHHHHHHHHhhc-
Q 039561            1 MLQQGLKIQHKFSRSFPTSTGALSSLESLHLHRNHLSGAIPLSLQNGTHFEVLDLRENAFIRDVPKWIKKSLLALFMMK-   79 (190)
Q Consensus         1 ~L~~L~l~~n~l~~~~p~~l~~l~~L~~l~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~~~~~l~~~~-   79 (190)
                      +|+.|++.+|+++. ++ .+..+++|+++++++|.+++..|  +..++.++++++++|.+.. ++. +.. ++.|..+. 
T Consensus        42 ~L~~L~l~~~~i~~-l~-~l~~l~~L~~L~ls~n~i~~~~~--l~~l~~l~~l~~~~n~~~~-i~~-l~~-l~~L~~l~l  114 (227)
T d1h6ua2          42 GITTLSAFGTGVTT-IE-GVQYLNNLIGLELKDNQITDLAP--LKNLTKITELELSGNPLKN-VSA-IAG-LQSIKTLDL  114 (227)
T ss_dssp             TCCEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCCCCGG--GTTCCSCCEEECCSCCCSC-CGG-GTT-CTTCCEEEC
T ss_pred             CcCEEECCCCCCCc-ch-hHhcCCCCcEeecCCceeecccc--ccccccccccccccccccc-ccc-ccc-ccccccccc
Confidence            47889999999886 53 68899999999999999984333  7788999999999988653 332 222 22221110 


Q ss_pred             ----CCcccccCCCCCCcEEEccCCeecccCCccCCCCCCCcEEEcccCcceeccCccccCCCCCCEEeCCCCceEEeec
Q 039561           80 ----GKAFEYSTNLNVLRVIELSKNNFLGEIAKGVTNPGASQTLNLSQNSFSRTIPESIGSMKSLESIDFSANHYLNLSN  155 (190)
Q Consensus        80 ----~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~l~l~~N~~l~l~~  155 (190)
                          ......+...+.+..+.++.+.+...  ..+..++.|+.|++++|.+++.  ..+..+++|+.++        +++
T Consensus       115 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~--~~~~~~~~L~~L~l~~n~~~~~--~~l~~l~~L~~L~--------Ls~  182 (227)
T d1h6ua2         115 TSTQITDVTPLAGLSNLQVLYLDLNQITNI--SPLAGLTNLQYLSIGNAQVSDL--TPLANLSKLTTLK--------ADD  182 (227)
T ss_dssp             TTSCCCCCGGGTTCTTCCEEECCSSCCCCC--GGGGGCTTCCEEECCSSCCCCC--GGGTTCTTCCEEE--------CCS
T ss_pred             ccccccccchhccccchhhhhchhhhhchh--hhhccccccccccccccccccc--hhhcccccceecc--------cCC
Confidence                00111223344455555555554321  1244456666666666666522  2255666666555        566


Q ss_pred             ccccccCCccccccccccccccCCcccCCC
Q 039561          156 NNLTGEIPSGIQLQGFHQSRFAGSELCGAP  185 (190)
Q Consensus       156 N~l~g~~p~~~~~~~l~~~~~~~n~l~~~~  185 (190)
                      |.++ .+|....+.+|+.+++++|+++..+
T Consensus       183 n~l~-~l~~l~~l~~L~~L~Ls~N~lt~i~  211 (227)
T d1h6ua2         183 NKIS-DISPLASLPNLIEVHLKNNQISDVS  211 (227)
T ss_dssp             SCCC-CCGGGGGCTTCCEEECTTSCCCBCG
T ss_pred             CccC-CChhhcCCCCCCEEECcCCcCCCCc
Confidence            6665 3454445667777777777666543

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.54  E-value=3e-14  Score=109.33  Aligned_cols=158  Identities=20%  Similarity=0.252  Sum_probs=72.2

Q ss_pred             CcceeccCCccccCCCcccCCCCCCcEEEcccCcccCcCCccccCCCCccEEeccCCcccCCCcHHHHHHHHHHHhh--c
Q 039561            2 LQQGLKIQHKFSRSFPTSTGALSSLESLHLHRNHLSGAIPLSLQNGTHFEVLDLRENAFIRDVPKWIKKSLLALFMM--K   79 (190)
Q Consensus         2 L~~L~l~~n~l~~~~p~~l~~l~~L~~l~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~~~~~l~~~--~   79 (190)
                      |+++++++|.++. + +.+..+++|+.+++++|.+++ ++ .+..+++|+.++++++.+.+. ++ +.. +..+..+  .
T Consensus       221 L~~L~l~~n~l~~-~-~~l~~l~~L~~L~l~~n~l~~-~~-~~~~~~~L~~L~l~~~~l~~~-~~-~~~-~~~l~~l~~~  293 (384)
T d2omza2         221 LDELSLNGNQLKD-I-GTLASLTNLTDLDLANNQISN-LA-PLSGLTKLTELKLGANQISNI-SP-LAG-LTALTNLELN  293 (384)
T ss_dssp             CCEEECCSSCCCC-C-GGGGGCTTCSEEECCSSCCCC-CG-GGTTCTTCSEEECCSSCCCCC-GG-GTT-CTTCSEEECC
T ss_pred             CCEEECCCCCCCC-c-chhhcccccchhccccCccCC-CC-cccccccCCEeeccCcccCCC-Cc-ccc-cccccccccc
Confidence            3445555555443 2 234455555555555555552 22 244455555555555554321 11 100 1111000  0


Q ss_pred             C-C--cccccCCCCCCcEEEccCCeecccCCccCCCCCCCcEEEcccCcceeccCccccCCCCCCEEeCCCCceEEeecc
Q 039561           80 G-K--AFEYSTNLNVLRVIELSKNNFLGEIAKGVTNPGASQTLNLSQNSFSRTIPESIGSMKSLESIDFSANHYLNLSNN  156 (190)
Q Consensus        80 ~-~--~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~l~l~~N~~l~l~~N  156 (190)
                      . .  ....+..++.+++|++++|++++. +. +..+++|+.|++++|.++ .++ .+..+++|+        +|++++|
T Consensus       294 ~n~l~~~~~~~~~~~l~~L~ls~n~l~~l-~~-l~~l~~L~~L~L~~n~l~-~l~-~l~~l~~L~--------~L~l~~N  361 (384)
T d2omza2         294 ENQLEDISPISNLKNLTYLTLYFNNISDI-SP-VSSLTKLQRLFFANNKVS-DVS-SLANLTNIN--------WLSAGHN  361 (384)
T ss_dssp             SSCCSCCGGGGGCTTCSEEECCSSCCSCC-GG-GGGCTTCCEEECCSSCCC-CCG-GGGGCTTCC--------EEECCSS
T ss_pred             ccccccccccchhcccCeEECCCCCCCCC-cc-cccCCCCCEEECCCCCCC-CCh-hHcCCCCCC--------EEECCCC
Confidence            0 0  011223344455555555555422 21 444455555555555554 222 344444555        4556667


Q ss_pred             cccccCCccccccccccccccCC
Q 039561          157 NLTGEIPSGIQLQGFHQSRFAGS  179 (190)
Q Consensus       157 ~l~g~~p~~~~~~~l~~~~~~~n  179 (190)
                      ++++ +|+...+.+|+.+.+++|
T Consensus       362 ~l~~-l~~l~~l~~L~~L~L~~N  383 (384)
T d2omza2         362 QISD-LTPLANLTRITQLGLNDQ  383 (384)
T ss_dssp             CCCB-CGGGTTCTTCSEEECCCE
T ss_pred             cCCC-ChhhccCCCCCEeeCCCC
Confidence            7763 444446677777777766

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.54  E-value=1.7e-14  Score=94.42  Aligned_cols=102  Identities=26%  Similarity=0.344  Sum_probs=83.2

Q ss_pred             cEEEcccCcccCcCCccccCCCCccEEeccCCcccCCCcHHHHHHHHHHHhhcCCcccccCCCCCCcEEEccCCeecccC
Q 039561           27 ESLHLHRNHLSGAIPLSLQNGTHFEVLDLRENAFIRDVPKWIKKSLLALFMMKGKAFEYSTNLNVLRVIELSKNNFLGEI  106 (190)
Q Consensus        27 ~~l~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~~~~~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~  106 (190)
                      ++|++++|.++ .++ .+..++.|++|++++|.+. .+|+.+..                  +++|++|++++|.++ .+
T Consensus         1 R~L~Ls~n~l~-~l~-~l~~l~~L~~L~ls~N~l~-~lp~~~~~------------------l~~L~~L~l~~N~i~-~l   58 (124)
T d1dcea3           1 RVLHLAHKDLT-VLC-HLEQLLLVTHLDLSHNRLR-ALPPALAA------------------LRCLEVLQASDNALE-NV   58 (124)
T ss_dssp             SEEECTTSCCS-SCC-CGGGGTTCCEEECCSSCCC-CCCGGGGG------------------CTTCCEEECCSSCCC-CC
T ss_pred             CEEEcCCCCCC-CCc-ccccCCCCCEEECCCCccC-cchhhhhh------------------hhccccccccccccc-cc
Confidence            57999999999 666 4788999999999999976 56766655                  999999999999998 45


Q ss_pred             CccCCCCCCCcEEEcccCcceecc-CccccCCCCCCEEeCCCCceEEeeccccc
Q 039561          107 AKGVTNPGASQTLNLSQNSFSRTI-PESIGSMKSLESIDFSANHYLNLSNNNLT  159 (190)
Q Consensus       107 p~~~~~l~~L~~L~l~~n~l~~~~-p~~l~~l~~L~~l~l~~N~~l~l~~N~l~  159 (190)
                      | .+..+++|+++++++|.+++.. ...+..+++|+.++        +++|+++
T Consensus        59 ~-~~~~l~~L~~L~l~~N~i~~~~~~~~l~~~~~L~~L~--------l~~N~i~  103 (124)
T d1dcea3          59 D-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLN--------LQGNSLC  103 (124)
T ss_dssp             G-GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEE--------CTTSGGG
T ss_pred             C-ccccccccCeEECCCCccCCCCCchhhcCCCCCCEEE--------CCCCcCC
Confidence            5 4889999999999999998432 24678888898655        6666665

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.51  E-value=9.4e-14  Score=99.83  Aligned_cols=157  Identities=16%  Similarity=0.189  Sum_probs=112.9

Q ss_pred             CCcceeccCCccccCCCcccCCCCCCcEEEcccCcccCcCCccccCCCCccEEeccCCcccCCCcHHHHHHHHHHHhh--
Q 039561            1 MLQQGLKIQHKFSRSFPTSTGALSSLESLHLHRNHLSGAIPLSLQNGTHFEVLDLRENAFIRDVPKWIKKSLLALFMM--   78 (190)
Q Consensus         1 ~L~~L~l~~n~l~~~~p~~l~~l~~L~~l~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~~~~~l~~~--   78 (190)
                      .|++|++++|.+++..  .+..+++++++++++|.++ .++ .+..++.|+.++++++...+..+-..   ...+..+  
T Consensus        64 ~L~~L~ls~n~i~~~~--~l~~l~~l~~l~~~~n~~~-~i~-~l~~l~~L~~l~l~~~~~~~~~~~~~---~~~~~~l~~  136 (227)
T d1h6ua2          64 NLIGLELKDNQITDLA--PLKNLTKITELELSGNPLK-NVS-AIAGLQSIKTLDLTSTQITDVTPLAG---LSNLQVLYL  136 (227)
T ss_dssp             TCCEEECCSSCCCCCG--GGTTCCSCCEEECCSCCCS-CCG-GGTTCTTCCEEECTTSCCCCCGGGTT---CTTCCEEEC
T ss_pred             CCcEeecCCceeeccc--ccccccccccccccccccc-ccc-cccccccccccccccccccccchhcc---ccchhhhhc
Confidence            3789999999998743  3889999999999999998 555 46789999999999988654322111   1111111  


Q ss_pred             -cCC--cccccCCCCCCcEEEccCCeecccCCccCCCCCCCcEEEcccCcceeccCccccCCCCCCEEeCCCCceEEeec
Q 039561           79 -KGK--AFEYSTNLNVLRVIELSKNNFLGEIAKGVTNPGASQTLNLSQNSFSRTIPESIGSMKSLESIDFSANHYLNLSN  155 (190)
Q Consensus        79 -~~~--~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~l~l~~N~~l~l~~  155 (190)
                       ...  ....+..++.++.|++++|.+.+. + .++.+++|+.|++++|.+++ ++ .+..+++|++|+        +++
T Consensus       137 ~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~-~-~l~~l~~L~~L~Ls~n~l~~-l~-~l~~l~~L~~L~--------Ls~  204 (227)
T d1h6ua2         137 DLNQITNISPLAGLTNLQYLSIGNAQVSDL-T-PLANLSKLTTLKADDNKISD-IS-PLASLPNLIEVH--------LKN  204 (227)
T ss_dssp             CSSCCCCCGGGGGCTTCCEEECCSSCCCCC-G-GGTTCTTCCEEECCSSCCCC-CG-GGGGCTTCCEEE--------CTT
T ss_pred             hhhhhchhhhhccccccccccccccccccc-h-hhcccccceecccCCCccCC-Ch-hhcCCCCCCEEE--------CcC
Confidence             111  122455688999999999998633 3 37889999999999999984 44 378889998555        777


Q ss_pred             ccccccCCcccccccccccccc
Q 039561          156 NNLTGEIPSGIQLQGFHQSRFA  177 (190)
Q Consensus       156 N~l~g~~p~~~~~~~l~~~~~~  177 (190)
                      |+++ .+|..-.+..|+.++++
T Consensus       205 N~lt-~i~~l~~l~~L~~L~ls  225 (227)
T d1h6ua2         205 NQIS-DVSPLANTSNLFIVTLT  225 (227)
T ss_dssp             SCCC-BCGGGTTCTTCCEEEEE
T ss_pred             CcCC-CCcccccCCCCCEEEee
Confidence            7777 55544467777777765

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.51  E-value=3.5e-14  Score=101.11  Aligned_cols=150  Identities=16%  Similarity=0.266  Sum_probs=119.4

Q ss_pred             ccCCccccCCCcccCCCCCCcEEEcccCcccCcCCccccCCCCccEEeccCCcccCCCcHHHHHHHHHHHhhcCCccccc
Q 039561            7 KIQHKFSRSFPTSTGALSSLESLHLHRNHLSGAIPLSLQNGTHFEVLDLRENAFIRDVPKWIKKSLLALFMMKGKAFEYS   86 (190)
Q Consensus         7 l~~n~l~~~~p~~l~~l~~L~~l~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~~~~~l~~~~~~~~~~~   86 (190)
                      +..+.+++.++.  ..+.+++++++++|.++ .++ .+..+++|+.|++++|.+.+ +++ +..                
T Consensus        31 l~~~~~~~~~~~--~~L~~L~~L~l~~~~i~-~l~-~l~~l~~L~~L~L~~n~i~~-l~~-~~~----------------   88 (210)
T d1h6ta2          31 LKKKSVTDAVTQ--NELNSIDQIIANNSDIK-SVQ-GIQYLPNVTKLFLNGNKLTD-IKP-LAN----------------   88 (210)
T ss_dssp             TTCSCTTSEECH--HHHHTCCEEECTTSCCC-CCT-TGGGCTTCCEEECCSSCCCC-CGG-GTT----------------
T ss_pred             hCcCccCCccCH--HHhcCccEEECcCCCCC-Cch-hHhhCCCCCEEeCCCccccC-ccc-ccc----------------
Confidence            444555543332  35778999999999998 444 36789999999999999765 332 233                


Q ss_pred             CCCCCCcEEEccCCeecccCCccCCCCCCCcEEEcccCcceeccCccccCCCCCCEEeCCCCc--------------eEE
Q 039561           87 TNLNVLRVIELSKNNFLGEIAKGVTNPGASQTLNLSQNSFSRTIPESIGSMKSLESIDFSANH--------------YLN  152 (190)
Q Consensus        87 ~~~~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~l~l~~N~--------------~l~  152 (190)
                        +++|++|++++|+++ .++ .+..+++|+.|++++|.+. .+ ..+..+++++.+++++|.              +++
T Consensus        89 --l~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~l~~~~~~-~~-~~l~~l~~l~~l~~~~n~l~~~~~~~~l~~L~~l~  162 (210)
T d1h6ta2          89 --LKNLGWLFLDENKVK-DLS-SLKDLKKLKSLSLEHNGIS-DI-NGLVHLPQLESLYLGNNKITDITVLSRLTKLDTLS  162 (210)
T ss_dssp             --CTTCCEEECCSSCCC-CGG-GGTTCTTCCEEECTTSCCC-CC-GGGGGCTTCCEEECCSSCCCCCGGGGGCTTCSEEE
T ss_pred             --Ccccccccccccccc-ccc-ccccccccccccccccccc-cc-ccccccccccccccccccccccccccccccccccc
Confidence              889999999999998 455 4888999999999999987 33 468889999999999987              899


Q ss_pred             eecccccccCCccccccccccccccCCcccCCC
Q 039561          153 LSNNNLTGEIPSGIQLQGFHQSRFAGSELCGAP  185 (190)
Q Consensus       153 l~~N~l~g~~p~~~~~~~l~~~~~~~n~l~~~~  185 (190)
                      +++|.++ .++....+.+++.+++++|.+...+
T Consensus       163 l~~n~l~-~i~~l~~l~~L~~L~Ls~N~i~~l~  194 (210)
T d1h6ta2         163 LEDNQIS-DIVPLAGLTKLQNLYLSKNHISDLR  194 (210)
T ss_dssp             CCSSCCC-CCGGGTTCTTCCEEECCSSCCCBCG
T ss_pred             ccccccc-ccccccCCCCCCEEECCCCCCCCCh
Confidence            9999998 5665558899999999999877655

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.50  E-value=5.1e-14  Score=101.98  Aligned_cols=180  Identities=13%  Similarity=0.053  Sum_probs=109.4

Q ss_pred             cceeccCCccccCCCcccCCCCCCcEEEcccCcccCcCCccccCCCCccEEeccCCcccCCCcHHHHHHHHHHHhh----
Q 039561            3 QQGLKIQHKFSRSFPTSTGALSSLESLHLHRNHLSGAIPLSLQNGTHFEVLDLRENAFIRDVPKWIKKSLLALFMM----   78 (190)
Q Consensus         3 ~~L~l~~n~l~~~~p~~l~~l~~L~~l~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~~~~~l~~~----   78 (190)
                      ++++.++.+++. +|+.+.  +++++|++++|.++...+..|..+++|++|++++|.+...++......+..+..+    
T Consensus        11 ~~i~c~~~~l~~-iP~~l~--~~l~~L~Ls~n~i~~l~~~~f~~l~~L~~L~ls~n~~~~~i~~~~f~~l~~l~~l~~~~   87 (242)
T d1xwdc1          11 RVFLCQESKVTE-IPSDLP--RNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEK   87 (242)
T ss_dssp             SEEEEESCSCSS-CCSCSC--SCCSEEEEESCCCCEECTTTTTTCTTCCEEEEESCTTCCEECSSSEESCTTCCEEEEEC
T ss_pred             CEEEEeCCCCCC-cCCCCC--CCCCEEECcCCcCCccChhHhhccchhhhhhhccccccceeeccccccccccccccccc
Confidence            345556666663 565443  4677777777777733334566777777777777776544332211112222111    


Q ss_pred             ----cCCcccccCCCCCCcEEEccCCeecccCC-ccCCCCCCCcEEEcccCcceeccCccccCCC-CCCEEeCCCCc---
Q 039561           79 ----KGKAFEYSTNLNVLRVIELSKNNFLGEIA-KGVTNPGASQTLNLSQNSFSRTIPESIGSMK-SLESIDFSANH---  149 (190)
Q Consensus        79 ----~~~~~~~~~~~~~L~~L~l~~n~l~~~~p-~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~-~L~~l~l~~N~---  149 (190)
                          ....+..+.++++|+++++++|.+....+ ..+..+..+..+...++.+....+..+..++ .++.+++++|+   
T Consensus        88 ~n~l~~~~~~~~~~l~~L~~l~l~~~~l~~~~~~~~~~~l~~l~~~~~~n~~l~~i~~~~~~~~~~~l~~L~l~~n~l~~  167 (242)
T d1xwdc1          88 ANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQE  167 (242)
T ss_dssp             CTTCCEECTTSEECCTTCCEEEEESCCCCSCCCCTTTCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCCE
T ss_pred             cccccccccccccccccccccccchhhhcccccccccccccccccccccccccccccccccccccccceeeecccccccc
Confidence                11112345668888888888888763222 1233445555556666666644445555544 67778888776   


Q ss_pred             -------------eEEeecccccccCCccc--cccccccccccCCcccCCCC
Q 039561          150 -------------YLNLSNNNLTGEIPSGI--QLQGFHQSRFAGSELCGAPF  186 (190)
Q Consensus       150 -------------~l~l~~N~l~g~~p~~~--~~~~l~~~~~~~n~l~~~~~  186 (190)
                                   .+++++|.++ .+|...  .+.+++.+++++|.+...|.
T Consensus       168 i~~~~~~~~~l~~~~~l~~n~l~-~l~~~~f~~l~~L~~L~Ls~N~l~~l~~  218 (242)
T d1xwdc1         168 IHNCAFNGTQLDELNLSDNNNLE-ELPNDVFHGASGPVILDISRTRIHSLPS  218 (242)
T ss_dssp             ECTTTTTTCCEEEEECTTCTTCC-CCCTTTTTTSCCCSEEECTTSCCCCCCS
T ss_pred             cccccccchhhhccccccccccc-cccHHHhcCCCCCCEEECCCCcCCccCH
Confidence                         3456788888 676643  68899999999998887764

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.46  E-value=2.1e-14  Score=98.27  Aligned_cols=115  Identities=17%  Similarity=0.150  Sum_probs=89.5

Q ss_pred             ccCCCCCCcEEEcccCcccCcCCccccCCCCccEEeccCCcccCCCcHHHHHHHHHHHhhcCCcccccCCCCCCcEEEcc
Q 039561           19 STGALSSLESLHLHRNHLSGAIPLSLQNGTHFEVLDLRENAFIRDVPKWIKKSLLALFMMKGKAFEYSTNLNVLRVIELS   98 (190)
Q Consensus        19 ~l~~l~~L~~l~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~~~~~l~~~~~~~~~~~~~~~~L~~L~l~   98 (190)
                      .+.+..++++|++++|+++ .++..+..+++|++|++++|.+.. ++. +                  ..+++|++|+++
T Consensus        13 ~~~n~~~lr~L~L~~n~I~-~i~~~~~~l~~L~~L~Ls~N~i~~-l~~-~------------------~~l~~L~~L~ls   71 (162)
T d1a9na_          13 QYTNAVRDRELDLRGYKIP-VIENLGATLDQFDAIDFSDNEIRK-LDG-F------------------PLLRRLKTLLVN   71 (162)
T ss_dssp             EEECTTSCEEEECTTSCCC-SCCCGGGGTTCCSEEECCSSCCCE-ECC-C------------------CCCSSCCEEECC
T ss_pred             hccCcCcCcEEECCCCCCC-ccCccccccccCCEEECCCCCCCc-cCC-c------------------ccCcchhhhhcc
Confidence            4667889999999999999 677666778999999999999763 321 2                  348899999999


Q ss_pred             CCeecccCCccCCCCCCCcEEEcccCcceeccC--ccccCCCCCCEEeCCCCceEEeecccccccCCc
Q 039561           99 KNNFLGEIAKGVTNPGASQTLNLSQNSFSRTIP--ESIGSMKSLESIDFSANHYLNLSNNNLTGEIPS  164 (190)
Q Consensus        99 ~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p--~~l~~l~~L~~l~l~~N~~l~l~~N~l~g~~p~  164 (190)
                      +|++....+..+..++.|+.|++++|.++. ++  ..+..+++|+.++        +++|+++ ..|.
T Consensus        72 ~N~i~~l~~~~~~~l~~L~~L~L~~N~i~~-~~~l~~l~~l~~L~~L~--------l~~N~i~-~~~~  129 (162)
T d1a9na_          72 NNRICRIGEGLDQALPDLTELILTNNSLVE-LGDLDPLASLKSLTYLC--------ILRNPVT-NKKH  129 (162)
T ss_dssp             SSCCCEECSCHHHHCTTCCEEECCSCCCCC-GGGGGGGGGCTTCCEEE--------CCSSGGG-GSTT
T ss_pred             cccccCCCccccccccccccceeccccccc-cccccccccccccchhh--------cCCCccc-cccc
Confidence            999985444445678999999999999984 44  3577888888655        6667776 4453

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.44  E-value=7e-13  Score=101.56  Aligned_cols=155  Identities=23%  Similarity=0.334  Sum_probs=100.6

Q ss_pred             CcceeccCCccccCCCcccCCCCCCcEEEcccCcccCcCCccccCCCCccEEeccCCcccCCCcHHHHHHHHHHHhhcCC
Q 039561            2 LQQGLKIQHKFSRSFPTSTGALSSLESLHLHRNHLSGAIPLSLQNGTHFEVLDLRENAFIRDVPKWIKKSLLALFMMKGK   81 (190)
Q Consensus         2 L~~L~l~~n~l~~~~p~~l~~l~~L~~l~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~~~~~l~~~~~~   81 (190)
                      ++.+++++|.+++..|  ....++|+++++++|.++ .++ .+..++.++.+++++|.+.+..+  +.            
T Consensus       199 ~~~l~l~~n~i~~~~~--~~~~~~L~~L~l~~n~l~-~~~-~l~~l~~L~~L~l~~n~l~~~~~--~~------------  260 (384)
T d2omza2         199 LESLIATNNQISDITP--LGILTNLDELSLNGNQLK-DIG-TLASLTNLTDLDLANNQISNLAP--LS------------  260 (384)
T ss_dssp             CSEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCC-CCG-GGGGCTTCSEEECCSSCCCCCGG--GT------------
T ss_pred             cceeeccCCccCCCCc--ccccCCCCEEECCCCCCC-Ccc-hhhcccccchhccccCccCCCCc--cc------------
Confidence            4566777777776433  455677888888888877 443 45667788888888887664322  22            


Q ss_pred             cccccCCCCCCcEEEccCCeecccCCccCCCCCCCcEEEcccCcceeccCccccCCCCCCEEeCCCCc------------
Q 039561           82 AFEYSTNLNVLRVIELSKNNFLGEIAKGVTNPGASQTLNLSQNSFSRTIPESIGSMKSLESIDFSANH------------  149 (190)
Q Consensus        82 ~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~l~l~~N~------------  149 (190)
                            .+++|+.++++++.+.+ +++ +..+..++.++++.|.+++  ...+..+++++.+++++|+            
T Consensus       261 ------~~~~L~~L~l~~~~l~~-~~~-~~~~~~l~~l~~~~n~l~~--~~~~~~~~~l~~L~ls~n~l~~l~~l~~l~~  330 (384)
T d2omza2         261 ------GLTKLTELKLGANQISN-ISP-LAGLTALTNLELNENQLED--ISPISNLKNLTYLTLYFNNISDISPVSSLTK  330 (384)
T ss_dssp             ------TCTTCSEEECCSSCCCC-CGG-GTTCTTCSEEECCSSCCSC--CGGGGGCTTCSEEECCSSCCSCCGGGGGCTT
T ss_pred             ------ccccCCEeeccCcccCC-CCc-ccccccccccccccccccc--ccccchhcccCeEECCCCCCCCCcccccCCC
Confidence                  25666666666666652 222 4445555566665555552  1234555556666666654            


Q ss_pred             --eEEeecccccccCCccccccccccccccCCcccCCC
Q 039561          150 --YLNLSNNNLTGEIPSGIQLQGFHQSRFAGSELCGAP  185 (190)
Q Consensus       150 --~l~l~~N~l~g~~p~~~~~~~l~~~~~~~n~l~~~~  185 (190)
                        +|++++|.++ .+|....+.+|+.+.+++|.+++.+
T Consensus       331 L~~L~L~~n~l~-~l~~l~~l~~L~~L~l~~N~l~~l~  367 (384)
T d2omza2         331 LQRLFFANNKVS-DVSSLANLTNINWLSAGHNQISDLT  367 (384)
T ss_dssp             CCEEECCSSCCC-CCGGGGGCTTCCEEECCSSCCCBCG
T ss_pred             CCEEECCCCCCC-CChhHcCCCCCCEEECCCCcCCCCh
Confidence              6778889888 5665447899999999999888764

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.38  E-value=9.2e-13  Score=89.36  Aligned_cols=104  Identities=16%  Similarity=0.100  Sum_probs=66.9

Q ss_pred             CcEEEcccCcccCcCCccccCCCCccEEeccCCc-ccCCCcHHHHHHHHHHHhhcCCcccccCCCCCCcEEEccCCeecc
Q 039561           26 LESLHLHRNHLSGAIPLSLQNGTHFEVLDLRENA-FIRDVPKWIKKSLLALFMMKGKAFEYSTNLNVLRVIELSKNNFLG  104 (190)
Q Consensus        26 L~~l~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~-~~~~~p~~~~~~~~~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~  104 (190)
                      .+.++.+++.++ ..|..+..+++++.|++++|+ +...-+..+                  .++++|+.|++++|+++.
T Consensus        10 ~~~l~c~~~~~~-~~p~~l~~l~~l~~L~l~~n~~l~~i~~~~f------------------~~l~~L~~L~Ls~N~l~~   70 (156)
T d2ifga3          10 SSGLRCTRDGAL-DSLHHLPGAENLTELYIENQQHLQHLELRDL------------------RGLGELRNLTIVKSGLRF   70 (156)
T ss_dssp             SSCEECCSSCCC-TTTTTSCSCSCCSEEECCSCSSCCEECGGGS------------------CSCCCCSEEECCSSCCCE
T ss_pred             CCeEEecCCCCc-cCcccccCccccCeeecCCCccccccCchhh------------------ccccccCcceeeccccCC
Confidence            445677777766 566667777777778776654 433222223                  237778888888888875


Q ss_pred             cCCccCCCCCCCcEEEcccCcceeccCccccCCCCCCEEeCCCCc
Q 039561          105 EIAKGVTNPGASQTLNLSQNSFSRTIPESIGSMKSLESIDFSANH  149 (190)
Q Consensus       105 ~~p~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~l~l~~N~  149 (190)
                      ..+.+|..+++|++|++++|.++ .+|.......+|+.|++++|.
T Consensus        71 i~~~~f~~l~~L~~L~Ls~N~l~-~l~~~~~~~~~l~~L~L~~Np  114 (156)
T d2ifga3          71 VAPDAFHFTPRLSRLNLSFNALE-SLSWKTVQGLSLQELVLSGNP  114 (156)
T ss_dssp             ECTTGGGSCSCCCEEECCSSCCS-CCCSTTTCSCCCCEEECCSSC
T ss_pred             cccccccccccccceeccCCCCc-ccChhhhccccccccccCCCc
Confidence            55667777888888888888887 555544344456655544443

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=99.37  E-value=7.5e-15  Score=103.74  Aligned_cols=109  Identities=18%  Similarity=0.297  Sum_probs=84.9

Q ss_pred             CCcccCCCCCCcEEEcccCcccCcCCccccCCCCccEEeccCCcccCCCcHHHHHHHHHHHhhcCCcccccCCCCCCcEE
Q 039561           16 FPTSTGALSSLESLHLHRNHLSGAIPLSLQNGTHFEVLDLRENAFIRDVPKWIKKSLLALFMMKGKAFEYSTNLNVLRVI   95 (190)
Q Consensus        16 ~p~~l~~l~~L~~l~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~~~~~l~~~~~~~~~~~~~~~~L~~L   95 (190)
                      ++..+..+++|++|++++|.++ .++ .+..+++|+.|++++|.+. .+|.....                  ++.|++|
T Consensus        40 l~~sl~~L~~L~~L~Ls~n~I~-~i~-~l~~l~~L~~L~Ls~N~i~-~i~~~~~~------------------~~~L~~L   98 (198)
T d1m9la_          40 MDATLSTLKACKHLALSTNNIE-KIS-SLSGMENLRILSLGRNLIK-KIENLDAV------------------ADTLEEL   98 (198)
T ss_dssp             CHHHHHHTTTCCEEECSEEEES-CCC-CHHHHTTCCEEECCEEEEC-SCSSHHHH------------------HHHCCEE
T ss_pred             hhhHHhcccccceeECcccCCC-Ccc-cccCCccccChhhcccccc-cccccccc------------------ccccccc
Confidence            3446778999999999999999 565 5778899999999999975 45654443                  5579999


Q ss_pred             EccCCeecccCCccCCCCCCCcEEEcccCcceeccC--ccccCCCCCCEEeCCCC
Q 039561           96 ELSKNNFLGEIAKGVTNPGASQTLNLSQNSFSRTIP--ESIGSMKSLESIDFSAN  148 (190)
Q Consensus        96 ~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p--~~l~~l~~L~~l~l~~N  148 (190)
                      ++++|.++ .++ .+..+++|+.|++++|.++. ++  ..+..+++|+.|++++|
T Consensus        99 ~l~~N~i~-~l~-~~~~l~~L~~L~L~~N~i~~-~~~~~~l~~l~~L~~L~L~~N  150 (198)
T d1m9la_          99 WISYNQIA-SLS-GIEKLVNLRVLYMSNNKITN-WGEIDKLAALDKLEDLLLAGN  150 (198)
T ss_dssp             ECSEEECC-CHH-HHHHHHHSSEEEESEEECCC-HHHHHHHTTTTTCSEEEECSS
T ss_pred             cccccccc-ccc-cccccccccccccccchhcc-ccccccccCCCccceeecCCC
Confidence            99999997 343 36778899999999999984 33  46788899996664444

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.32  E-value=4e-12  Score=86.16  Aligned_cols=105  Identities=15%  Similarity=0.030  Sum_probs=84.6

Q ss_pred             cceeccCCccccCCCcccCCCCCCcEEEcccC-cccCcCCccccCCCCccEEeccCCcccCCCcHHHHHHHHHHHhhcCC
Q 039561            3 QQGLKIQHKFSRSFPTSTGALSSLESLHLHRN-HLSGAIPLSLQNGTHFEVLDLRENAFIRDVPKWIKKSLLALFMMKGK   81 (190)
Q Consensus         3 ~~L~l~~n~l~~~~p~~l~~l~~L~~l~l~~n-~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~~~~~l~~~~~~   81 (190)
                      +.++..++++.. .|..+..+++|++|++.+| .++...+..|..+++|+.|++++|.+....+..+..           
T Consensus        11 ~~l~c~~~~~~~-~p~~l~~l~~l~~L~l~~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~-----------   78 (156)
T d2ifga3          11 SGLRCTRDGALD-SLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHF-----------   78 (156)
T ss_dssp             SCEECCSSCCCT-TTTTSCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGS-----------
T ss_pred             CeEEecCCCCcc-CcccccCccccCeeecCCCccccccCchhhccccccCcceeeccccCCcccccccc-----------
Confidence            456777877776 6778889999999999766 488545567889999999999999987655555544           


Q ss_pred             cccccCCCCCCcEEEccCCeecccCCccCCCCCCCcEEEcccCcce
Q 039561           82 AFEYSTNLNVLRVIELSKNNFLGEIAKGVTNPGASQTLNLSQNSFS  127 (190)
Q Consensus        82 ~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~  127 (190)
                             +++|++|++++|++. .+|........|+.|++++|.+.
T Consensus        79 -------l~~L~~L~Ls~N~l~-~l~~~~~~~~~l~~L~L~~Np~~  116 (156)
T d2ifga3          79 -------TPRLSRLNLSFNALE-SLSWKTVQGLSLQELVLSGNPLH  116 (156)
T ss_dssp             -------CSCCCEEECCSSCCS-CCCSTTTCSCCCCEEECCSSCCC
T ss_pred             -------cccccceeccCCCCc-ccChhhhccccccccccCCCccc
Confidence                   899999999999998 56655444567999999999885

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=99.28  E-value=3.2e-14  Score=100.42  Aligned_cols=103  Identities=20%  Similarity=0.185  Sum_probs=60.1

Q ss_pred             CcceeccCCccccCCCcccCCCCCCcEEEcccCcccCcCCccccCCCCccEEeccCCcccCCCcHHHHHHHHHHHhhcCC
Q 039561            2 LQQGLKIQHKFSRSFPTSTGALSSLESLHLHRNHLSGAIPLSLQNGTHFEVLDLRENAFIRDVPKWIKKSLLALFMMKGK   81 (190)
Q Consensus         2 L~~L~l~~n~l~~~~p~~l~~l~~L~~l~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~~~~~l~~~~~~   81 (190)
                      |++|++++|+++. ++ .+..+++|++|++++|.++ .++..+..++.|++|++++|.+.. + +.+..           
T Consensus        50 L~~L~Ls~n~I~~-i~-~l~~l~~L~~L~Ls~N~i~-~i~~~~~~~~~L~~L~l~~N~i~~-l-~~~~~-----------  113 (198)
T d1m9la_          50 CKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIK-KIENLDAVADTLEELWISYNQIAS-L-SGIEK-----------  113 (198)
T ss_dssp             CCEEECSEEEESC-CC-CHHHHTTCCEEECCEEEEC-SCSSHHHHHHHCCEEECSEEECCC-H-HHHHH-----------
T ss_pred             cceeECcccCCCC-cc-cccCCccccChhhcccccc-cccccccccccccccccccccccc-c-ccccc-----------
Confidence            5566666666664 33 4566666777777776666 444433334456666776666543 2 22333           


Q ss_pred             cccccCCCCCCcEEEccCCeecccCC--ccCCCCCCCcEEEcccCccee
Q 039561           82 AFEYSTNLNVLRVIELSKNNFLGEIA--KGVTNPGASQTLNLSQNSFSR  128 (190)
Q Consensus        82 ~~~~~~~~~~L~~L~l~~n~l~~~~p--~~~~~l~~L~~L~l~~n~l~~  128 (190)
                             +++|+.|++++|+++. ++  ..++.+++|+.|++++|.+..
T Consensus       114 -------l~~L~~L~L~~N~i~~-~~~~~~l~~l~~L~~L~L~~N~l~~  154 (198)
T d1m9la_         114 -------LVNLRVLYMSNNKITN-WGEIDKLAALDKLEDLLLAGNPLYN  154 (198)
T ss_dssp             -------HHHSSEEEESEEECCC-HHHHHHHTTTTTCSEEEECSSHHHH
T ss_pred             -------cccccccccccchhcc-ccccccccCCCccceeecCCCcccc
Confidence                   5556666776666652 22  345666667777776666653

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.28  E-value=9.3e-12  Score=89.78  Aligned_cols=102  Identities=19%  Similarity=0.216  Sum_probs=62.8

Q ss_pred             CcEEEcccCcccCcCCccccCCCCccEEeccCCcccCCCcH-HHHHHHHHHHhhcCCcccccCCCCCCcEEEccCCeecc
Q 039561           26 LESLHLHRNHLSGAIPLSLQNGTHFEVLDLRENAFIRDVPK-WIKKSLLALFMMKGKAFEYSTNLNVLRVIELSKNNFLG  104 (190)
Q Consensus        26 L~~l~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~-~~~~~~~~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~  104 (190)
                      .++++.++..++ .+|+.+.  +++++|++++|.+.. +|. .+..                  +++|++|++++|.+.+
T Consensus        10 ~~~i~c~~~~l~-~iP~~l~--~~l~~L~Ls~n~i~~-l~~~~f~~------------------l~~L~~L~ls~n~~~~   67 (242)
T d1xwdc1          10 NRVFLCQESKVT-EIPSDLP--RNAIELRFVLTKLRV-IQKGAFSG------------------FGDLEKIEISQNDVLE   67 (242)
T ss_dssp             SSEEEEESCSCS-SCCSCSC--SCCSEEEEESCCCCE-ECTTTTTT------------------CTTCCEEEEESCTTCC
T ss_pred             CCEEEEeCCCCC-CcCCCCC--CCCCEEECcCCcCCc-cChhHhhc------------------cchhhhhhhccccccc
Confidence            367888888888 7887653  579999999999764 443 3333                  5666666666665543


Q ss_pred             cC-CccCCCCCCCcEEEccc-CcceeccCccccCCCCCCEEeCCCCc
Q 039561          105 EI-AKGVTNPGASQTLNLSQ-NSFSRTIPESIGSMKSLESIDFSANH  149 (190)
Q Consensus       105 ~~-p~~~~~l~~L~~L~l~~-n~l~~~~p~~l~~l~~L~~l~l~~N~  149 (190)
                      .+ +..+..++.++.+.+.. |.+....+..+..+++|+.+++++|.
T Consensus        68 ~i~~~~f~~l~~l~~l~~~~~n~l~~~~~~~~~~l~~L~~l~l~~~~  114 (242)
T d1xwdc1          68 VIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTG  114 (242)
T ss_dssp             EECSSSEESCTTCCEEEEECCTTCCEECTTSEECCTTCCEEEEESCC
T ss_pred             eeeccccccccccccccccccccccccccccccccccccccccchhh
Confidence            33 23445555555555433 44444444555556666666655554

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=99.25  E-value=1.8e-10  Score=86.62  Aligned_cols=149  Identities=19%  Similarity=0.218  Sum_probs=102.9

Q ss_pred             CcceeccCCccccCCCcccCCCCCCcEEEcccCcccCcCCccccCCCCccEEeccCCcccCCCcHHHHHHHHHHHhhcCC
Q 039561            2 LQQGLKIQHKFSRSFPTSTGALSSLESLHLHRNHLSGAIPLSLQNGTHFEVLDLRENAFIRDVPKWIKKSLLALFMMKGK   81 (190)
Q Consensus         2 L~~L~l~~n~l~~~~p~~l~~l~~L~~l~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~~~~~l~~~~~~   81 (190)
                      +++|+++++.++. +|+.   +++|++|++++|+++ .+|..   +.+|+.|++++|.+. .++..              
T Consensus        40 l~~LdLs~~~L~~-lp~~---~~~L~~L~Ls~N~l~-~lp~~---~~~L~~L~l~~n~l~-~l~~l--------------   96 (353)
T d1jl5a_          40 AHELELNNLGLSS-LPEL---PPHLESLVASCNSLT-ELPEL---PQSLKSLLVDNNNLK-ALSDL--------------   96 (353)
T ss_dssp             CSEEECTTSCCSC-CCSC---CTTCSEEECCSSCCS-SCCCC---CTTCCEEECCSSCCS-CCCSC--------------
T ss_pred             CCEEEeCCCCCCC-CCCC---CCCCCEEECCCCCCc-ccccc---hhhhhhhhhhhcccc-hhhhh--------------
Confidence            6789999999986 7753   578999999999999 77865   457899999999865 33321              


Q ss_pred             cccccCCCCCCcEEEccCCeecccCCccCCCCCCCcEEEcccCcceeccCc-------------------cccCCCCCCE
Q 039561           82 AFEYSTNLNVLRVIELSKNNFLGEIAKGVTNPGASQTLNLSQNSFSRTIPE-------------------SIGSMKSLES  142 (190)
Q Consensus        82 ~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~-------------------~l~~l~~L~~  142 (190)
                             .+.|++|++++|.+. .+|. ++.++.|+.++++++.++. .+.                   .+..++.++.
T Consensus        97 -------p~~L~~L~L~~n~l~-~lp~-~~~l~~L~~L~l~~~~~~~-~~~~~~~l~~l~~~~~~~~~~~~l~~l~~l~~  166 (353)
T d1jl5a_          97 -------PPLLEYLGVSNNQLE-KLPE-LQNSSFLKIIDVDNNSLKK-LPDLPPSLEFIAAGNNQLEELPELQNLPFLTA  166 (353)
T ss_dssp             -------CTTCCEEECCSSCCS-SCCC-CTTCTTCCEEECCSSCCSC-CCCCCTTCCEEECCSSCCSSCCCCTTCTTCCE
T ss_pred             -------ccccccccccccccc-cccc-hhhhccceeeccccccccc-cccccccccchhhcccccccccccccccccee
Confidence                   235889999999887 5665 5778899999998887762 222                   2334455666


Q ss_pred             EeCCCCc------------eEEeecccccccCCccccccccccccccCCcccCC
Q 039561          143 IDFSANH------------YLNLSNNNLTGEIPSGIQLQGFHQSRFAGSELCGA  184 (190)
Q Consensus       143 l~l~~N~------------~l~l~~N~l~g~~p~~~~~~~l~~~~~~~n~l~~~  184 (190)
                      +++..|.            .+...++.+. .+|....+..++.+.+.+|.....
T Consensus       167 L~l~~n~~~~~~~~~~~~~~l~~~~~~~~-~~~~~~~l~~L~~l~l~~n~~~~~  219 (353)
T d1jl5a_         167 IYADNNSLKKLPDLPLSLESIVAGNNILE-ELPELQNLPFLTTIYADNNLLKTL  219 (353)
T ss_dssp             EECCSSCCSSCCCCCTTCCEEECCSSCCS-SCCCCTTCTTCCEEECCSSCCSSC
T ss_pred             ccccccccccccccccccccccccccccc-cccccccccccccccccccccccc
Confidence            6666664            3444444444 455555667777777777744443

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.24  E-value=1.8e-12  Score=96.19  Aligned_cols=61  Identities=15%  Similarity=0.134  Sum_probs=37.1

Q ss_pred             CCCCCcEEEccCCe-ecccCCccCCCCCCCcEEEcccC-cceeccCccccCCCCCCEEeCCCC
Q 039561           88 NLNVLRVIELSKNN-FLGEIAKGVTNPGASQTLNLSQN-SFSRTIPESIGSMKSLESIDFSAN  148 (190)
Q Consensus        88 ~~~~L~~L~l~~n~-l~~~~p~~~~~l~~L~~L~l~~n-~l~~~~p~~l~~l~~L~~l~l~~N  148 (190)
                      .+++|++|++++|. +++.....+..+++|++|+++++ .+++.....++++++|+.|++.++
T Consensus       173 ~~~~L~~L~L~~~~~itd~~~~~l~~~~~L~~L~L~~C~~i~~~~l~~L~~~~~L~~L~l~~~  235 (284)
T d2astb2         173 RCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI  235 (284)
T ss_dssp             HCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS
T ss_pred             ccccccccccccccCCCchhhhhhcccCcCCEEECCCCCCCChHHHHHHhcCCCCCEEeeeCC
Confidence            35667777776643 55455555666667777777663 455444455666666776666555

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=99.13  E-value=8.5e-12  Score=94.66  Aligned_cols=181  Identities=16%  Similarity=0.191  Sum_probs=117.9

Q ss_pred             CcceeccCCccccC----------CCcccCCCCCCcEEEcccCcccCc----CCccccCCCCccEEeccCCcccCCCcHH
Q 039561            2 LQQGLKIQHKFSRS----------FPTSTGALSSLESLHLHRNHLSGA----IPLSLQNGTHFEVLDLRENAFIRDVPKW   67 (190)
Q Consensus         2 L~~L~l~~n~l~~~----------~p~~l~~l~~L~~l~l~~n~~~~~----~~~~~~~l~~L~~L~l~~n~~~~~~p~~   67 (190)
                      |+.++++++.....          +.+.+...++|+.|++++|.++..    +...+...++|+.|++++|.+.......
T Consensus        61 L~~l~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~n~l~~~~~~~  140 (344)
T d2ca6a1          61 LEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAK  140 (344)
T ss_dssp             CCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHH
T ss_pred             CCEEECCCCcccccccccchHHHHHHHHHhhCCCcccccccccccccccccchhhhhcccccchheeccccccccccccc
Confidence            56777776644321          122355678899999999988743    2233445688999999998865433333


Q ss_pred             HHHHHHHHHh------------h--cCC-c--------ccccCCCCCCcEEEccCCeeccc-----CCccCCCCCCCcEE
Q 039561           68 IKKSLLALFM------------M--KGK-A--------FEYSTNLNVLRVIELSKNNFLGE-----IAKGVTNPGASQTL  119 (190)
Q Consensus        68 ~~~~~~~l~~------------~--~~~-~--------~~~~~~~~~L~~L~l~~n~l~~~-----~p~~~~~l~~L~~L  119 (190)
                      +...+..+..            +  ... +        ...+...+.++.|++++|.+...     +...+...+.|+.|
T Consensus       141 l~~~l~~~~~~~~~~~~~~L~~l~l~~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~g~~~~l~~~l~~~~~L~~L  220 (344)
T d2ca6a1         141 IARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVL  220 (344)
T ss_dssp             HHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEE
T ss_pred             ccccccccccccccccCcccceeecccccccccccccccchhhhhhhhcccccccccccccccccchhhhhcchhhhccc
Confidence            3322332210            0  000 0        11233467899999999998632     33456678899999


Q ss_pred             EcccCcceec----cCccccCCCCCCEEeCCCCc----------------------eEEeeccccccc----CCccc--c
Q 039561          120 NLSQNSFSRT----IPESIGSMKSLESIDFSANH----------------------YLNLSNNNLTGE----IPSGI--Q  167 (190)
Q Consensus       120 ~l~~n~l~~~----~p~~l~~l~~L~~l~l~~N~----------------------~l~l~~N~l~g~----~p~~~--~  167 (190)
                      ++++|.++..    +...+..+++|+.|++++|.                      .||+++|.++..    +...+  .
T Consensus       221 ~Ls~N~i~~~g~~~L~~~l~~~~~L~~L~Ls~n~i~~~g~~~l~~~l~~~~~~~L~~L~ls~N~i~~~~~~~l~~~l~~~  300 (344)
T d2ca6a1         221 DLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEK  300 (344)
T ss_dssp             ECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHH
T ss_pred             ccccccccccccccccccccccccchhhhhhcCccCchhhHHHHHHhhhccCCCCCEEECCCCcCChHHHHHHHHHHHcc
Confidence            9999988643    34456788899999999997                      799999998643    22222  2


Q ss_pred             ccccccccccCCccc
Q 039561          168 LQGFHQSRFAGSELC  182 (190)
Q Consensus       168 ~~~l~~~~~~~n~l~  182 (190)
                      ...++.+++++|.+.
T Consensus       301 ~~~L~~L~l~~N~~~  315 (344)
T d2ca6a1         301 MPDLLFLELNGNRFS  315 (344)
T ss_dssp             CTTCCEEECTTSBSC
T ss_pred             CCCCCEEECCCCcCC
Confidence            457888999998664

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=99.13  E-value=1.7e-09  Score=81.14  Aligned_cols=45  Identities=33%  Similarity=0.336  Sum_probs=32.1

Q ss_pred             CCCCEEeCCCCc------------eEEeecccccccCCccccccccccccccCCcccCCC
Q 039561          138 KSLESIDFSANH------------YLNLSNNNLTGEIPSGIQLQGFHQSRFAGSELCGAP  185 (190)
Q Consensus       138 ~~L~~l~l~~N~------------~l~l~~N~l~g~~p~~~~~~~l~~~~~~~n~l~~~~  185 (190)
                      ++|++|++++|+            .|++++|+|+ .+|..  +.+++.+++++|.+...|
T Consensus       284 ~~L~~L~Ls~N~l~~lp~~~~~L~~L~L~~N~L~-~l~~~--~~~L~~L~L~~N~L~~lp  340 (353)
T d1jl5a_         284 PSLEELNVSNNKLIELPALPPRLERLIASFNHLA-EVPEL--PQNLKQLHVEYNPLREFP  340 (353)
T ss_dssp             TTCCEEECCSSCCSCCCCCCTTCCEEECCSSCCS-CCCCC--CTTCCEEECCSSCCSSCC
T ss_pred             CCCCEEECCCCccCccccccCCCCEEECCCCcCC-ccccc--cCCCCEEECcCCcCCCCC
Confidence            467777777775            6777777777 66654  456777788888777665

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=98.94  E-value=2.1e-10  Score=86.78  Aligned_cols=182  Identities=15%  Similarity=0.160  Sum_probs=113.1

Q ss_pred             CCcceeccCCccccC----CCcccCCCCCCcEEEcccCcccCc----------CCccccCCCCccEEeccCCcccCCCcH
Q 039561            1 MLQQGLKIQHKFSRS----FPTSTGALSSLESLHLHRNHLSGA----------IPLSLQNGTHFEVLDLRENAFIRDVPK   66 (190)
Q Consensus         1 ~L~~L~l~~n~l~~~----~p~~l~~l~~L~~l~l~~n~~~~~----------~~~~~~~l~~L~~L~l~~n~~~~~~p~   66 (190)
                      +|++|++++|.+...    +...+...++|+.++++++.....          +...+...++|+.|++++|.+......
T Consensus        32 ~l~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~l~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~  111 (344)
T d2ca6a1          32 SVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQE  111 (344)
T ss_dssp             CCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCCCTTTHH
T ss_pred             CCCEEECcCCcCCHHHHHHHHHHHHhCCCCCEEECCCCcccccccccchHHHHHHHHHhhCCCccccccccccccccccc
Confidence            478899999988643    344567789999999988764411          123345678899999999997765444


Q ss_pred             HHHHHHHHHH---hh--cCC-c-c----------------cccCCCCCCcEEEccCCeeccc----CCccCCCCCCCcEE
Q 039561           67 WIKKSLLALF---MM--KGK-A-F----------------EYSTNLNVLRVIELSKNNFLGE----IAKGVTNPGASQTL  119 (190)
Q Consensus        67 ~~~~~~~~l~---~~--~~~-~-~----------------~~~~~~~~L~~L~l~~n~l~~~----~p~~~~~l~~L~~L  119 (190)
                      .+...++...   .+  ... + +                ......+.++.+.++.|.+...    +...+.....++.+
T Consensus       112 ~l~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~~~~~~~~~~L~~l~l~~n~i~~~~~~~l~~~l~~~~~L~~L  191 (344)
T d2ca6a1         112 PLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTV  191 (344)
T ss_dssp             HHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHHHCTTCCEE
T ss_pred             chhhhhcccccchheecccccccccccccccccccccccccccccCcccceeecccccccccccccccchhhhhhhhccc
Confidence            4443333211   11  000 0 0                0011345666777776666422    22234456788889


Q ss_pred             EcccCcceec-----cCccccCCCCCCEEeCCCCc--------------------eEEeecccccccCCccc-------c
Q 039561          120 NLSQNSFSRT-----IPESIGSMKSLESIDFSANH--------------------YLNLSNNNLTGEIPSGI-------Q  167 (190)
Q Consensus       120 ~l~~n~l~~~-----~p~~l~~l~~L~~l~l~~N~--------------------~l~l~~N~l~g~~p~~~-------~  167 (190)
                      ++++|.++..     +...+..+++|+.|++++|.                    +|++++|.+++.-...+       .
T Consensus       192 ~L~~n~i~~~g~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g~~~L~~~l~~~~~L~~L~Ls~n~i~~~g~~~l~~~l~~~~  271 (344)
T d2ca6a1         192 KMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLE  271 (344)
T ss_dssp             ECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCS
T ss_pred             ccccccccccccccchhhhhcchhhhcccccccccccccccccccccccccccchhhhhhcCccCchhhHHHHHHhhhcc
Confidence            9988887632     23456677889999998886                    78888888864322211       1


Q ss_pred             ccccccccccCCccc
Q 039561          168 LQGFHQSRFAGSELC  182 (190)
Q Consensus       168 ~~~l~~~~~~~n~l~  182 (190)
                      ...++.+++++|.+.
T Consensus       272 ~~~L~~L~ls~N~i~  286 (344)
T d2ca6a1         272 NIGLQTLRLQYNEIE  286 (344)
T ss_dssp             SCCCCEEECCSSCCB
T ss_pred             CCCCCEEECCCCcCC
Confidence            345778888888654

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.88  E-value=3.2e-10  Score=83.77  Aligned_cols=144  Identities=14%  Similarity=0.169  Sum_probs=95.1

Q ss_pred             CCCCCCcEEEcccCcccCc-CCccccCCCCccEEeccCCcccCCCcHHHHHHHHHHHhhcCCcccccCCCCCCcEEEccC
Q 039561           21 GALSSLESLHLHRNHLSGA-IPLSLQNGTHFEVLDLRENAFIRDVPKWIKKSLLALFMMKGKAFEYSTNLNVLRVIELSK   99 (190)
Q Consensus        21 ~~l~~L~~l~l~~n~~~~~-~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~~~~~l~~~~~~~~~~~~~~~~L~~L~l~~   99 (190)
                      ....+|++|+++++.++.. +...+..+++|++|+++++.+.+..+..+.                  .+++|+.|++++
T Consensus        43 ~~~~~L~~LdLs~~~i~~~~l~~l~~~c~~L~~L~L~~~~l~~~~~~~l~------------------~~~~L~~L~Ls~  104 (284)
T d2astb2          43 FSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLA------------------KNSNLVRLNLSG  104 (284)
T ss_dssp             CCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHT------------------TCTTCSEEECTT
T ss_pred             ccCCCCCEEECCCCccCHHHHHHHHHhCCCcccccccccCCCcHHHHHHh------------------cCCCCcCccccc
Confidence            3557899999999888633 344466788999999999886654444443                  388999999998


Q ss_pred             C-eeccc-CCccCCCCCCCcEEEcccC-cceec-cCcccc-CCCCCCEEeCCCCc-------------------eEEeec
Q 039561          100 N-NFLGE-IAKGVTNPGASQTLNLSQN-SFSRT-IPESIG-SMKSLESIDFSANH-------------------YLNLSN  155 (190)
Q Consensus       100 n-~l~~~-~p~~~~~l~~L~~L~l~~n-~l~~~-~p~~l~-~l~~L~~l~l~~N~-------------------~l~l~~  155 (190)
                      + .+++. +......+++|+.|+++++ .+++. +...+. ..++|+.++++++.                   +|++++
T Consensus       105 c~~itd~~l~~l~~~~~~L~~L~ls~c~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~i~~~~l~~l~~~~~~L~~L~L~~  184 (284)
T d2astb2         105 CSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSD  184 (284)
T ss_dssp             CBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTT
T ss_pred             cccccccccchhhHHHHhccccccccccccccccchhhhcccccccchhhhccccccccccccccccccccccccccccc
Confidence            5 45432 2222346789999999885 34421 222232 24578888887652                   688877


Q ss_pred             c-cccccCCccc-cccccccccccCC-ccc
Q 039561          156 N-NLTGEIPSGI-QLQGFHQSRFAGS-ELC  182 (190)
Q Consensus       156 N-~l~g~~p~~~-~~~~l~~~~~~~n-~l~  182 (190)
                      + .+++..+..+ .+++++.+.++++ .+.
T Consensus       185 ~~~itd~~~~~l~~~~~L~~L~L~~C~~i~  214 (284)
T d2astb2         185 SVMLKNDCFQEFFQLNYLQHLSLSRCYDII  214 (284)
T ss_dssp             CTTCCGGGGGGGGGCTTCCEEECTTCTTCC
T ss_pred             ccCCCchhhhhhcccCcCCEEECCCCCCCC
Confidence            5 4665555544 6677887877775 554

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.68  E-value=2.6e-09  Score=82.73  Aligned_cols=61  Identities=20%  Similarity=0.287  Sum_probs=37.0

Q ss_pred             CCCCcEEEccCCeeccc----CCccCC-CCCCCcEEEcccCcceec----cCccccCCCCCCEEeCCCCc
Q 039561           89 LNVLRVIELSKNNFLGE----IAKGVT-NPGASQTLNLSQNSFSRT----IPESIGSMKSLESIDFSANH  149 (190)
Q Consensus        89 ~~~L~~L~l~~n~l~~~----~p~~~~-~l~~L~~L~l~~n~l~~~----~p~~l~~l~~L~~l~l~~N~  149 (190)
                      .++|++|++++|.+++.    ++..+. ....|++|++++|.+++.    +.+.+..+++|++|++++|+
T Consensus       339 ~~~L~~L~Ls~N~i~~~g~~~l~~~l~~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~N~  408 (460)
T d1z7xw1         339 NRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNC  408 (460)
T ss_dssp             CSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCCCCCEEECCSSS
T ss_pred             ccchhhhheeeecccCcccchhhhhhhcccCCCCEEECCCCCCChHHHHHHHHHHhcCCCCCEEECCCCc
Confidence            55678888888877532    233332 346678888888877642    33345556777766644443

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.57  E-value=1.9e-09  Score=83.46  Aligned_cols=113  Identities=16%  Similarity=0.129  Sum_probs=69.8

Q ss_pred             CcceeccCCccccC-CCcccCCCCCCcEEEcccCcccC----cCCccccCCCCccEEeccCCcccCCCcHHHHHHHHHHH
Q 039561            2 LQQGLKIQHKFSRS-FPTSTGALSSLESLHLHRNHLSG----AIPLSLQNGTHFEVLDLRENAFIRDVPKWIKKSLLALF   76 (190)
Q Consensus         2 L~~L~l~~n~l~~~-~p~~l~~l~~L~~l~l~~n~~~~----~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~~~~~l~   76 (190)
                      |++|+++++++++. +.+.+..++++++|++++|.++.    .+...+...++|+.||+++|.+....-..+..      
T Consensus         4 l~~ld~~~~~i~~~~~~~l~~~l~~l~~L~L~~~~i~~~~~~~l~~~L~~~~~L~~LdLs~N~i~~~~~~~l~~------   77 (460)
T d1z7xw1           4 IQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQ------   77 (460)
T ss_dssp             EEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHH------
T ss_pred             CCEEEeeCCcCChHHHHHHHHhCCCCCEEEeCCCCCCHHHHHHHHHHHhcCCCCCEEECcCCcCChHHHHHHHH------
Confidence            56788888887753 12234456777888888887762    23344566778888888887754321122221      


Q ss_pred             hhcCCcccccC-CCCCCcEEEccCCeeccc----CCccCCCCCCCcEEEcccCccee
Q 039561           77 MMKGKAFEYST-NLNVLRVIELSKNNFLGE----IAKGVTNPGASQTLNLSQNSFSR  128 (190)
Q Consensus        77 ~~~~~~~~~~~-~~~~L~~L~l~~n~l~~~----~p~~~~~l~~L~~L~l~~n~l~~  128 (190)
                              .+. ....|+.|++++|.+++.    ++..+..++.|+.|++++|.+++
T Consensus        78 --------~l~~~~~~L~~L~L~~n~it~~~~~~l~~~l~~~~~L~~L~L~~N~i~~  126 (460)
T d1z7xw1          78 --------GLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGD  126 (460)
T ss_dssp             --------TTCSTTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHH
T ss_pred             --------HHhcCCCCCCEEECCCCCccccccccccchhhccccccccccccccchh
Confidence                    111 123578888888877632    34556677788888888887763

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.55  E-value=2e-09  Score=72.98  Aligned_cols=39  Identities=26%  Similarity=0.288  Sum_probs=16.8

Q ss_pred             CCCCcEEEccCCeeccc--CCccCCCCCCCcEEEcccCcce
Q 039561           89 LNVLRVIELSKNNFLGE--IAKGVTNPGASQTLNLSQNSFS  127 (190)
Q Consensus        89 ~~~L~~L~l~~n~l~~~--~p~~~~~l~~L~~L~l~~n~l~  127 (190)
                      ++.|++|++++|+++..  ++..+..+++|+.|++++|.++
T Consensus        64 ~~~L~~L~Ls~N~i~~l~~~~~~~~~l~~L~~L~Ls~N~i~  104 (162)
T d1koha1          64 IPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELK  104 (162)
T ss_dssp             CTTCCCCCCCSSCCCCCSGGGTHHHHSTTCCCCCCTTSCCC
T ss_pred             CCCCCEeeCCCccccCCchhHHHHhhCCcccccccccCccc
Confidence            44444555555544421  1122233444555555555544

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=98.23  E-value=4e-07  Score=61.51  Aligned_cols=114  Identities=15%  Similarity=0.146  Sum_probs=75.3

Q ss_pred             CCCCCCcEEEcccC-cccCc----CCccccCCCCccEEeccCCcccCCCcHHHHHHHHHHHhhcCCcccccCCCCCCcEE
Q 039561           21 GALSSLESLHLHRN-HLSGA----IPLSLQNGTHFEVLDLRENAFIRDVPKWIKKSLLALFMMKGKAFEYSTNLNVLRVI   95 (190)
Q Consensus        21 ~~l~~L~~l~l~~n-~~~~~----~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~~~~~l~~~~~~~~~~~~~~~~L~~L   95 (190)
                      .+.++|+.|+++++ .++..    +-..+...+.|+.|++++|.+.......+...++.              .+.|++|
T Consensus        12 ~n~~~L~~L~L~~~~~i~~~~~~~l~~~L~~n~~L~~L~Ls~n~l~~~~~~~la~~L~~--------------n~~L~~L   77 (167)
T d1pgva_          12 EDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIET--------------SPSLRVL   77 (167)
T ss_dssp             TTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHH--------------CSSCCEE
T ss_pred             hCCCCCcEEEeCCCCCCCHHHHHHHHHHHhhCCccceeeccccccchhHHHHHhhhhhh--------------cccccce
Confidence            35688999999874 45521    22345567889999999998764333333332222              7889999


Q ss_pred             EccCCeeccc----CCccCCCCCCCcEEEcccCcceec-------cCccccCCCCCCEEeCCCC
Q 039561           96 ELSKNNFLGE----IAKGVTNPGASQTLNLSQNSFSRT-------IPESIGSMKSLESIDFSAN  148 (190)
Q Consensus        96 ~l~~n~l~~~----~p~~~~~l~~L~~L~l~~n~l~~~-------~p~~l~~l~~L~~l~l~~N  148 (190)
                      ++++|.++..    +...+...+.|+.|++++|.+...       +...+...++|+.++++.+
T Consensus        78 ~L~~n~i~~~g~~~l~~aL~~n~sL~~L~l~~n~~~~~g~~~~~~l~~~L~~n~sL~~l~l~~~  141 (167)
T d1pgva_          78 NVESNFLTPELLARLLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFA  141 (167)
T ss_dssp             ECCSSBCCHHHHHHHHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCC
T ss_pred             eeehhhcchHHHHHHHHHHHhCCcCCEEECCCCcCCCccHHHHHHHHHHHHhCCCccEeeCcCC
Confidence            9999998743    334567778899999998865421       2334455677887765443

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.08  E-value=2.3e-07  Score=62.42  Aligned_cols=105  Identities=19%  Similarity=0.141  Sum_probs=69.9

Q ss_pred             cCCCCCCcEEEcccCcccCcCCccccCCCCccEEeccCCcccCCC--cHHHHHHHHHHHhhcCCcccccCCCCCCcEEEc
Q 039561           20 TGALSSLESLHLHRNHLSGAIPLSLQNGTHFEVLDLRENAFIRDV--PKWIKKSLLALFMMKGKAFEYSTNLNVLRVIEL   97 (190)
Q Consensus        20 l~~l~~L~~l~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~--p~~~~~~~~~l~~~~~~~~~~~~~~~~L~~L~l   97 (190)
                      +..+..+..+....+... .++..+..++.|++|++++|.+....  +..+..                  +++|+.|++
T Consensus        38 l~~~~~~~~l~~~~~~~~-~l~~~~~~~~~L~~L~Ls~N~i~~l~~~~~~~~~------------------l~~L~~L~L   98 (162)
T d1koha1          38 LVAQNIDVVLNRRSSMAA-TLRIIEENIPELLSLNLSNNRLYRLDDMSSIVQK------------------APNLKILNL   98 (162)
T ss_dssp             TTTTTCCCCTTSHHHHHH-HHHHHHHHCTTCCCCCCCSSCCCCCSGGGTHHHH------------------STTCCCCCC
T ss_pred             hhhccchhhcchhhhHhh-hhHHHHHhCCCCCEeeCCCccccCCchhHHHHhh------------------CCccccccc
Confidence            334444444444444444 34444456889999999999987532  233444                  899999999


Q ss_pred             cCCeecccCCc-cCCCCCCCcEEEcccCcceeccCc-------cccCCCCCCEEe
Q 039561           98 SKNNFLGEIAK-GVTNPGASQTLNLSQNSFSRTIPE-------SIGSMKSLESID  144 (190)
Q Consensus        98 ~~n~l~~~~p~-~~~~l~~L~~L~l~~n~l~~~~p~-------~l~~l~~L~~l~  144 (190)
                      ++|.++. +++ .......|+.+++++|.+.+....       .+..+|+|+.||
T Consensus        99 s~N~i~~-l~~l~~l~~~~L~~L~L~~Npl~~~~~~~~~y~~~i~~~~P~L~~LD  152 (162)
T d1koha1          99 SGNELKS-ERELDKIKGLKLEELWLDGNSLSDTFRDQSTYISAIRERFPKLLRLD  152 (162)
T ss_dssp             TTSCCCC-GGGHHHHTTCCCSSCCCTTSTTSSSSSSHHHHHHHHHTTSTTCCEET
T ss_pred             ccCcccc-chhhhhhhccccceeecCCCCcCcCcccchhHHHHHHHHCCCCCEEC
Confidence            9999984 333 223445789999999999754432       256788998766

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=97.97  E-value=6.1e-07  Score=60.57  Aligned_cols=112  Identities=9%  Similarity=0.106  Sum_probs=77.2

Q ss_pred             CCcceeccCC-ccccC----CCcccCCCCCCcEEEcccCcccCc----CCccccCCCCccEEeccCCcccCCCcHHHHHH
Q 039561            1 MLQQGLKIQH-KFSRS----FPTSTGALSSLESLHLHRNHLSGA----IPLSLQNGTHFEVLDLRENAFIRDVPKWIKKS   71 (190)
Q Consensus         1 ~L~~L~l~~n-~l~~~----~p~~l~~l~~L~~l~l~~n~~~~~----~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~~   71 (190)
                      +|++|+++++ .++..    +-..+...+.|++|++++|.++..    +...+...+.|+.|++++|.+.......+.. 
T Consensus        16 ~L~~L~L~~~~~i~~~~~~~l~~~L~~n~~L~~L~Ls~n~l~~~~~~~la~~L~~n~~L~~L~L~~n~i~~~g~~~l~~-   94 (167)
T d1pgva_          16 DLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLLR-   94 (167)
T ss_dssp             SCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHHH-
T ss_pred             CCcEEEeCCCCCCCHHHHHHHHHHHhhCCccceeeccccccchhHHHHHhhhhhhcccccceeeehhhcchHHHHHHHH-
Confidence            3788999874 46532    333566788999999999998732    2234455688999999999976544333433 


Q ss_pred             HHHHHhhcCCcccccCCCCCCcEEEccCCeecc-------cCCccCCCCCCCcEEEcccCcc
Q 039561           72 LLALFMMKGKAFEYSTNLNVLRVIELSKNNFLG-------EIAKGVTNPGASQTLNLSQNSF  126 (190)
Q Consensus        72 ~~~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~-------~~p~~~~~l~~L~~L~l~~n~l  126 (190)
                                   .+...+.|++|++++|.+..       .+...+...+.|+.|+++.+..
T Consensus        95 -------------aL~~n~sL~~L~l~~n~~~~~g~~~~~~l~~~L~~n~sL~~l~l~~~~~  143 (167)
T d1pgva_          95 -------------STLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFASM  143 (167)
T ss_dssp             -------------HTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCCH
T ss_pred             -------------HHHhCCcCCEEECCCCcCCCccHHHHHHHHHHHHhCCCccEeeCcCCCc
Confidence                         33446789999999886542       1334445568899999876644

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=97.78  E-value=4.8e-06  Score=55.84  Aligned_cols=115  Identities=12%  Similarity=0.165  Sum_probs=76.2

Q ss_pred             cCCCCCCcEEEccc-CcccCc----CCccccCCCCccEEeccCCcccCCCcHHHHHHHHHHHhhcCCcccccCCCCCCcE
Q 039561           20 TGALSSLESLHLHR-NHLSGA----IPLSLQNGTHFEVLDLRENAFIRDVPKWIKKSLLALFMMKGKAFEYSTNLNVLRV   94 (190)
Q Consensus        20 l~~l~~L~~l~l~~-n~~~~~----~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~~~~~l~~~~~~~~~~~~~~~~L~~   94 (190)
                      ..+.+.|++|++++ +.++..    +...+...++|+.|++++|.+....-..+...++.              .+.++.
T Consensus        13 ~~~~~~L~~L~L~~~~~i~~~~~~~l~~al~~n~~L~~L~Ls~n~l~~~~~~~L~~~l~~--------------~~~l~~   78 (166)
T d1io0a_          13 QNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKV--------------NNTLKS   78 (166)
T ss_dssp             HTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHH--------------CSSCCE
T ss_pred             HhcCCCCcEEEcCCCCCCCHHHHHHHHHHHhcCCccCeeeccCCcccHHHHHHHHHHHhh--------------cccchh
Confidence            34668999999987 456521    33445577899999999998765444444442322              678999


Q ss_pred             EEccCCeeccc----CCccCCCCCCCcEEEc--ccCccee----ccCccccCCCCCCEEeCCCC
Q 039561           95 IELSKNNFLGE----IAKGVTNPGASQTLNL--SQNSFSR----TIPESIGSMKSLESIDFSAN  148 (190)
Q Consensus        95 L~l~~n~l~~~----~p~~~~~l~~L~~L~l--~~n~l~~----~~p~~l~~l~~L~~l~l~~N  148 (190)
                      +++++|.++..    +...+...+.|+.+++  +.|.+..    .+...+...++|+.|+++.+
T Consensus        79 l~l~~~~~~~~g~~~l~~~l~~~~~L~~l~L~l~~n~i~~~~~~~La~~L~~n~~L~~L~l~~~  142 (166)
T d1io0a_          79 LNVESNFISGSGILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFT  142 (166)
T ss_dssp             EECCSSCCCHHHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCS
T ss_pred             hhhccccccchhHHHHHHHHHhCccccEEeeccCCCcCcHHHHHHHHHHHHhCCCcCEEeCcCC
Confidence            99999988633    3345666788887665  4566653    23344567788887776544

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=97.41  E-value=8.2e-06  Score=54.66  Aligned_cols=112  Identities=7%  Similarity=-0.005  Sum_probs=75.7

Q ss_pred             CCcceeccC-CccccC----CCcccCCCCCCcEEEcccCcccCc----CCccccCCCCccEEeccCCcccCCCcHHHHHH
Q 039561            1 MLQQGLKIQ-HKFSRS----FPTSTGALSSLESLHLHRNHLSGA----IPLSLQNGTHFEVLDLRENAFIRDVPKWIKKS   71 (190)
Q Consensus         1 ~L~~L~l~~-n~l~~~----~p~~l~~l~~L~~l~l~~n~~~~~----~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~~   71 (190)
                      +|++|++++ +.++..    +...+...++|+.|++++|.++..    +...+...+.++.+++++|.+....-..+.. 
T Consensus        18 ~L~~L~L~~~~~i~~~~~~~l~~al~~n~~L~~L~Ls~n~l~~~~~~~L~~~l~~~~~l~~l~l~~~~~~~~g~~~l~~-   96 (166)
T d1io0a_          18 DLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILALVE-   96 (166)
T ss_dssp             TCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHHHHH-
T ss_pred             CCcEEEcCCCCCCCHHHHHHHHHHHhcCCccCeeeccCCcccHHHHHHHHHHHhhcccchhhhhccccccchhHHHHHH-
Confidence            477888887 456532    334566789999999999998733    2234455689999999999876433333333 


Q ss_pred             HHHHHhhcCCcccccCCCCCCcEEEc--cCCeecc----cCCccCCCCCCCcEEEcccCcc
Q 039561           72 LLALFMMKGKAFEYSTNLNVLRVIEL--SKNNFLG----EIAKGVTNPGASQTLNLSQNSF  126 (190)
Q Consensus        72 ~~~l~~~~~~~~~~~~~~~~L~~L~l--~~n~l~~----~~p~~~~~l~~L~~L~l~~n~l  126 (190)
                                   .+...+.++.+++  +.|.+..    .+...+...+.|+.|+++.+..
T Consensus        97 -------------~l~~~~~L~~l~L~l~~n~i~~~~~~~La~~L~~n~~L~~L~l~~~~~  144 (166)
T d1io0a_          97 -------------ALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQ  144 (166)
T ss_dssp             -------------GGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSH
T ss_pred             -------------HHHhCccccEEeeccCCCcCcHHHHHHHHHHHHhCCCcCEEeCcCCCC
Confidence                         3334778887666  4667753    2444556788999999987654