Citrus Sinensis ID: 039590

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------38
MAKSNGNFPEDVMIEVLSRLSVKSLLRFKCVCREWCSLFENPSFISKHLSNDDNDRLFVTYMVTDDGDDYSYPRDSFCLFPDETLTDISLADFDFQQPMREFLGGPFDGIFCIHGPTNDRLILCNLETKESRTLPKRRVVFPRFCSISDTCMGFGLDIMSNDYKLVMIHSLWNEKRQEIYEFAHVAMYNLRTNSWRDLKSFKSDHYVMSFWSGSLYVDGVCYWLSRFRNNDHAVILSFHLGNDVFEEVQEPYIPQSEPTIIGVYNHSLCVLLSHNIENYYDIWVMKDKCWIKQLSVGPFVGVQRPLGFWKKGAFFVVSTSGHLLLYDPNTQEMRDLGVTCFDVSVHMYKESLIRLKGGDNLLDFDIPWHVLGVYQTNSC
cccccccccHHHHHHHcccccHHHHHHHHHHcHHHHHHcccHHHHHHHHccccccccEEEEEEEccccccccccccccccccccccccccccccccccccEEEEEEEccEEEEEcccccEEEEEEcccccEEEcccccccccccccccccEEEEEEEcccccEEEEEEEEEEcccccccccEEEEEEEEcccccEEEccccccccEEEcccccEEEEccEEEEEEEEccccEEEEEEEEccccEEEEEcccccccccccEEEEEccEEEEEEEcccccEEEEEEEccccEEEEEEEcccccccEEEEEEEcccEEEEEEccEEEEEEcccccEEEEEEEEEccEEEEEEcccccccccccccccccccEEccEEccccc
cccccccccHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcccHHHHHHHHcccccccEEEEEEEccccccEEcccccccccccccccccccccccccccEEEEEEcccEEEEEEccccccEEEEccccccEEEccccccccccccccEEEEEEEcEccccccEEEEEEEEccccccccccccEEEEEEEcccccEEEEEcccccccccccccccEEEEEEEEEEEEEcccccEEEEEEEcccccccccccccccccccEEEEEEccEEEEEEEcccccEEEEEEEEccEEEEEEEEcccccccEEEEEEEccEEEEEccccEEEEEcccccEEEEEEEEcEEEEEEEEEccEEEEccccccccccEEEEEEEEcccccc
maksngnfpeDVMIEVLSRLSVKSLLRFKCVCRewcslfenpsfiskhlsnddndrLFVTYMVtddgddysyprdsfclfpdetltdisladfdfqqpmreflggpfdgifcihgptndrLILCnletkesrtlpkrrvvfprfcsisdtcmgfgldimsndYKLVMIHSLWNEKRQEIYEFAHVAMYNLRTNSWRDLKSFKSDHYVMSFwsgslyvdgvcywlsrfrnndHAVILSFHLgndvfeevqepyipqseptiigVYNHSLCVLLSHNIENYYDIWVMKDkcwikqlsvgpfvgvqrplgfwkkgAFFVVStsghlllydpntqemRDLGVTCFDVSVHMYKESLIRlkggdnlldfdipwhvlgvyqtnsc
maksngnfpedvMIEVLSRLSVKSLLRFKCVCREWCSLFenpsfiskhlsnddndRLFVTYMVTDDGDDYSYPRDSFCLFPDETLTDISLADFDFQQPMREFLGGPFDGIFCIHGPTNDRLILCNLetkesrtlpkrrvvfprFCSISDTCMGFGLDIMSNDYKLVMIHSLWNEKRQEIYEFAHVAMYNLRTNSWRDLKSFKSDHYVMSFWSGSLYVDGVCYWLSRFRNNDHAVILSFHLGNDVFEEVQEPYIPQSEPTIIGVYNHSLCVLLSHNIENYYDIWVMKDKCWIKQLSVGPFVGVQRPLGFWKKGAFFVVSTSGHLLLYDPNTQEMRDLGVTCFDVSVHMYKESLIRLKGGDNLLDFDIPWHVLGVYQTNSC
MAKSNGNFPEDVMIEvlsrlsvksllrFKCVCREWCSLFENPSFISKHLSNDDNDRLFVTYMVTDDGDDYSYPRDSFCLFPDETLTDISLADFDFQQPMREFLGGPFDGIFCIHGPTNDRLILCNLETKESRTLPKRRVVFPRFCSISDTCMGFGLDIMSNDYKLVMIHSLWNEKRQEIYEFAHVAMYNLRTNSWRDLKSFKSDHYVMSFWSGSLYVDGVCYWLSRFRNNDHAVILSFHLGNDVFEEVQEPYIPQSEPTIIGVYNHSLCVLLSHNIENYYDIWVMKDKCWIKQLSVGPFVGVQRPLGFWKKGAFFVVSTSGHLLLYDPNTQEMRDLGVTCFDVSVHMYKESLIRLKGGDNLLDFDIPWHVLGVYQTNSC
**********DVMIEVLSRLSVKSLLRFKCVCREWCSLFENPSFISKHLSNDDNDRLFVTYMVTDDGDDYSYPRDSFCLFPDETLTDISLADFDFQQPMREFLGGPFDGIFCIHGPTNDRLILCNLETKESRTLPKRRVVFPRFCSISDTCMGFGLDIMSNDYKLVMIHSLWNEKRQEIYEFAHVAMYNLRTNSWRDLKSFKSDHYVMSFWSGSLYVDGVCYWLSRFRNNDHAVILSFHLGNDVFEEVQEPYIPQSEPTIIGVYNHSLCVLLSHNIENYYDIWVMKDKCWIKQLSVGPFVGVQRPLGFWKKGAFFVVSTSGHLLLYDPNTQEMRDLGVTCFDVSVHMYKESLIRLKGGDNLLDFDIPWHVLGVYQ****
***SNGNFPEDVMIEVLSRLSVKSLLRFKCVCREWCSLFENPSFISKHLSNDDNDRLFVTYMVTDDGDDYSYPRDSFCLFPDETLTDISLADFDFQQPMREFLGGPFDGIFCIHGPTNDRLILCNLETKESRTLPKRRVVFPRFCSISDTCMGFGLDIMSNDYKLVMIHSLWNEKRQEIYEFAHVAMYNLRTNSWRDLKSFKSDHYVMSFWSGSLYVDGVCYWLSRFRNNDHAVILSFHLGNDVFEEVQEPYIPQSEPTIIGVYNHSLCVLLSHNIENYYDIWVMKDKCWIKQLSVGPFVGVQRPLGFWKKGAFFVVSTSGHLLLYDPNTQEMRDLGVTCFDVSVHMYKESLIRLKGGDNLLDFDIPWHVLGVY*****
********PEDVMIEVLSRLSVKSLLRFKCVCREWCSLFENPSFISKHLSNDDNDRLFVTYMVTDDGDDYSYPRDSFCLFPDETLTDISLADFDFQQPMREFLGGPFDGIFCIHGPTNDRLILCNLETKESRTLPKRRVVFPRFCSISDTCMGFGLDIMSNDYKLVMIHSLWNEKRQEIYEFAHVAMYNLRTNSWRDLKSFKSDHYVMSFWSGSLYVDGVCYWLSRFRNNDHAVILSFHLGNDVFEEVQEPYIPQSEPTIIGVYNHSLCVLLSHNIENYYDIWVMKDKCWIKQLSVGPFVGVQRPLGFWKKGAFFVVSTSGHLLLYDPNTQEMRDLGVTCFDVSVHMYKESLIRLKGGDNLLDFDIPWHVLGVYQTNSC
*****GNFPEDVMIEVLSRLSVKSLLRFKCVCREWCSLFENPSFISKHLSNDDNDRLFVTYMVTDDGDDYSYPRDSFCLFPDETLTDISLADFDFQQPMREFLGGPFDGIFCIHGPTNDRLILCNLETKESRTLPKRRVVFPRFCSISDTCMGFGLDIMSNDYKLVMIHSLWNEKRQEIYEFAHVAMYNLRTNSWRDLKSFKSDHYVMSFWSGSLYVDGVCYWLSRFRNNDHAVILSFHLGNDVFEEVQEPYIPQSEPTIIGVYNHSLCVLLSHNIENYYDIWVMKDKCWIKQLSVGPFVGVQRPLGFWKKGAFFVVSTSGHLLLYDPNTQEMRDLGVTCFDVSVHMYKESLIRLKGGDNLLDFDIPWHVLGVYQT**C
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MAKSNGNFPEDVMIEVLSRLSVKSLLRFKCVCREWCSLFENPSFISKHLSNDDNDRLFVTYMVTDDGDDYSYPRDSFCLFPDETLTDISLADFDFQQPMREFLGGPFDGIFCIHGPTNDRLILCNLETKESRTLPKRRVVFPRFCSISDTCMGFGLDIMSNDYKLVMIHSLWNEKRQEIYEFAHVAMYNLRTNSWRDLKSFKSDHYVMSFWSGSLYVDGVCYWLSRFRNNDHAVILSFHLGNDVFEEVQEPYIPQSEPTIIGVYNHSLCVLLSHNIENYYDIWVMKDKCWIKQLSVGPFVGVQRPLGFWKKGAFFVVSTSGHLLLYDPNTQEMRDLGVTCFDVSVHMYKESLIRLKGGDNLLDFDIPWHVLGVYQTNSC
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query379 2.2.26 [Sep-21-2011]
Q8GXC7427 F-box/kelch-repeat protei yes no 0.881 0.782 0.237 1e-17
Q9FT50390 Putative F-box protein At no no 0.614 0.597 0.275 3e-15
Q9LPW2416 Putative F-box/kelch-repe no no 0.667 0.608 0.246 3e-13
Q7X7A9312 F-box protein At1g11270 O no no 0.617 0.75 0.252 1e-11
Q9FZF8389 Putative F-box protein At no no 0.833 0.812 0.212 1e-11
Q9SCL2397 F-box protein At3g49450 O no no 0.715 0.682 0.226 2e-11
Q9LU24360 Putative F-box protein At no no 0.707 0.744 0.268 2e-11
Q9LIR8364 F-box/kelch-repeat protei no no 0.751 0.782 0.257 2e-11
Q9LX89445 F-box protein At5g10340 O no no 0.831 0.707 0.243 3e-11
Q9LPW4462 Putative F-box protein At no no 0.720 0.590 0.237 7e-11
>sp|Q8GXC7|FBK50_ARATH F-box/kelch-repeat protein At3g06240 OS=Arabidopsis thaliana GN=At3g06240 PE=2 SV=1 Back     alignment and function desciption
 Score = 90.9 bits (224), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 94/395 (23%), Positives = 176/395 (44%), Gaps = 61/395 (15%)

Query: 8   FPEDVMIEVLSRLSVKSLLRFKCVCREWCSLFENPSFISKHLS----NDDNDRLFVTYMV 63
            P +++ E+L RL  KS+ RF+CV + +C+L  +P F   HL     N+    L    +V
Sbjct: 36  LPPEIITEILLRLPAKSIGRFRCVSKLFCTLSSDPGFAKIHLDLILRNESVRSLHRKLIV 95

Query: 64  TDD----------GD--------DYSYP-RDSFCLFPDETLTDISLADFDFQQPMREF-- 102
           +            GD        +++YP +D   +F +     +    +D ++ M +   
Sbjct: 96  SSHNLYSLDFNSIGDGIRDLAAVEHNYPLKDDPSIFSEMIRNYVGDHLYDDRRVMLKLNA 155

Query: 103 ---------LGGPFDGIFCIHGPTNDRLILCNLETKESRTLPKR-RVVFPRFCSISDTCM 152
                    + G  +G+ CI  P    + L N  T +S+ LP+  R     +   +    
Sbjct: 156 KSYRRNWVEIVGSSNGLVCI-SPGEGAVFLYNPTTGDSKRLPENFRPKSVEYERDNFQTY 214

Query: 153 GFGLDIMSNDYKLVMIHSLWNEKRQEIYEFAHVAMYNLRTNSWRDLKSFKSDHYVMSFWS 212
           GFG D +++DYKLV + +   +           ++Y+L+ +SWR + +   +H   S+ S
Sbjct: 215 GFGFDGLTDDYKLVKLVATSED-------ILDASVYSLKADSWRRICNLNYEHNDGSYTS 267

Query: 213 GSLYVDGVCYWLSRFRNNDHAVILSFHLGNDVFEEVQEPYIPQS-----EPTIIGVYNHS 267
           G ++ +G  +W+     ++  V+++F +  + F E+  P   +         ++G  N  
Sbjct: 268 G-VHFNGAIHWVFTESRHNQRVVVAFDIQTEEFREMPVPDEAEDCSHRFSNFVVGSLNGR 326

Query: 268 LCVLLS-HNIENYYDIWVMKD----KCWIKQLSVGPFVGVQRPLGFWKKGAFFVVSTSGH 322
           LCV+ S +++ +  DIWVM +    K W  ++ +       +PL   K     ++   G 
Sbjct: 327 LCVVNSCYDVHD--DIWVMSEYGEAKSW-SRIRINLLYRSMKPLCSTKNDEEVLLELDGD 383

Query: 323 LLLYDPNTQEMRDLGVTCFDVS----VHMYKESLI 353
           L+LY+  T    +LG+    +S     + Y ESLI
Sbjct: 384 LVLYNFETNASSNLGICGVKLSDGFEANTYVESLI 418

Arabidopsis thaliana (taxid: 3702)
>sp|Q9FT50|FB202_ARATH Putative F-box protein At3g52320 OS=Arabidopsis thaliana GN=At3g52320 PE=4 SV=1 Back     alignment and function description
>sp|Q9LPW2|FBK2_ARATH Putative F-box/kelch-repeat protein At1g12870 OS=Arabidopsis thaliana GN=At1g12870 PE=4 SV=2 Back     alignment and function description
>sp|Q7X7A9|FB4_ARATH F-box protein At1g11270 OS=Arabidopsis thaliana GN=At1g11270 PE=2 SV=1 Back     alignment and function description
>sp|Q9FZF8|FB44_ARATH Putative F-box protein At1g47790 OS=Arabidopsis thaliana GN=At1g47790 PE=4 SV=1 Back     alignment and function description
>sp|Q9SCL2|FB197_ARATH F-box protein At3g49450 OS=Arabidopsis thaliana GN=At3g49450 PE=2 SV=1 Back     alignment and function description
>sp|Q9LU24|FB145_ARATH Putative F-box protein At3g16210 OS=Arabidopsis thaliana GN=At3g16210 PE=4 SV=1 Back     alignment and function description
>sp|Q9LIR8|FBK67_ARATH F-box/kelch-repeat protein At3g23880 OS=Arabidopsis thaliana GN=At3g23880 PE=2 SV=1 Back     alignment and function description
>sp|Q9LX89|FB255_ARATH F-box protein At5g10340 OS=Arabidopsis thaliana GN=At5g10340 PE=2 SV=1 Back     alignment and function description
>sp|Q9LPW4|FB7_ARATH Putative F-box protein At1g12855 OS=Arabidopsis thaliana GN=At1g12855 PE=4 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query379
224119696367 predicted protein [Populus trichocarpa] 0.899 0.929 0.362 7e-48
224117590441 f-box family protein [Populus trichocarp 0.928 0.798 0.349 6e-44
224133722443 predicted protein [Populus trichocarpa] 0.889 0.760 0.354 1e-43
198400307393 F-box protein FB1 [Malus x domestica] 0.878 0.847 0.308 8e-37
301069172393 MdFBX17 [Malus x domestica] 0.875 0.844 0.312 8e-37
316996538393 hypothetical protein [Pyrus pyrifolia] 0.878 0.847 0.298 1e-34
301069152393 MdFBX7 [Malus x domestica] 0.875 0.844 0.297 8e-34
451321025392 S-Locus F-box 6-S21 [Pyrus x bretschneid 0.902 0.872 0.303 1e-33
197253321392 SFBB34-alpha [Pyrus x bretschneideri] 0.902 0.872 0.305 2e-33
301069164390 MdFBX13 [Malus x domestica] 0.897 0.871 0.288 3e-33
>gi|224119696|ref|XP_002318137.1| predicted protein [Populus trichocarpa] gi|222858810|gb|EEE96357.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
 Score =  197 bits (501), Expect = 7e-48,   Method: Compositional matrix adjust.
 Identities = 134/370 (36%), Positives = 199/370 (53%), Gaps = 29/370 (7%)

Query: 1   MAKSNGNF-PEDVMIEVLSRLSVKSLLRFKCVCREWCSLFENPSFISKHLSNDDND---- 55
           MA  NG   PEDV+IE+LS L VK+LL+FKCVC+ W  +  + +FIS HL+N  N+    
Sbjct: 1   MATENGCLLPEDVIIEILSLLPVKTLLQFKCVCKSWYGIITSSNFISLHLNNHYNNIKSG 60

Query: 56  RLFVTYMVTDDGDDYSYPRDSFCLFPDETLTDISLADFDFQQPMREFLGGPFDGIFCIHG 115
            L   ++                LF DE+LTD+S    D   P+R  L GP +GIF +  
Sbjct: 61  HLLAHFVCPQ----------LLELFQDESLTDLSHQGLD--PPIRGRLCGPCNGIFYVDS 108

Query: 116 PTNDRLILCNLETKESRTLPKRRVVFPRFCSISDTCMGFGLDIMSNDYKLVMI-HSLWNE 174
             +    L N  TKE + LP++           +   GFG D ++NDYK+V+I  S   E
Sbjct: 109 EDSSGSGLWNPATKEFKLLPEKIRNKSSLPLYYEDSYGFGFDPVTNDYKVVVIRESYTRE 168

Query: 175 KRQEIYEFAHVAMYNLRTNSWRDLKSFKSDHYVMSFWSGSLYVDGVCYWLSRFRNNDHAV 234
              E +  + V +Y LRT+SWR   S    + ++  +  +  VDGV YW +        V
Sbjct: 169 YYLEKFPSSLVIVYTLRTDSWRCWGSLDQGYTLLGNYCYT-NVDGVYYWQAG-HGVHMNV 226

Query: 235 ILSFHLGNDVFEEVQEP-YIPQSEPTIIGVYNHSLCVLLSHNIENYYDIWVMKDKCWIKQ 293
           ILSF++  D F+E+QEP Y   +  T + +Y+ S+     HN+E + DIWV+ + CWI+Q
Sbjct: 227 ILSFNMATDAFQEIQEPDYDKPAYSTRLILYHDSIAFSTVHNVEKFLDIWVLNEGCWIRQ 286

Query: 294 LSVGPFVGVQRPLGFWKKGAFFVVSTSGHLLLYDPNTQEMRDL-----GVTCFDVSVHMY 348
               P + ++ P+  WK G   + S +  L+LYD N QE++DL     GV C+++ V  Y
Sbjct: 287 FKSRPLLELRNPVAHWKNGNVILDSDNDQLMLYDTNKQELKDLRFKGTGV-CYEILV--Y 343

Query: 349 KESLIRLKGG 358
           +ESL+ +K G
Sbjct: 344 RESLVSIKDG 353

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|224117590|ref|XP_002331674.1| f-box family protein [Populus trichocarpa] gi|222874093|gb|EEF11224.1| f-box family protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|224133722|ref|XP_002327664.1| predicted protein [Populus trichocarpa] gi|222836749|gb|EEE75142.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|198400307|gb|ACH87163.1| F-box protein FB1 [Malus x domestica] Back     alignment and taxonomy information
>gi|301069172|dbj|BAJ11965.1| MdFBX17 [Malus x domestica] Back     alignment and taxonomy information
>gi|316996538|dbj|BAJ52228.1| hypothetical protein [Pyrus pyrifolia] Back     alignment and taxonomy information
>gi|301069152|dbj|BAJ11955.1| MdFBX7 [Malus x domestica] Back     alignment and taxonomy information
>gi|451321025|emb|CCH26216.2| S-Locus F-box 6-S21 [Pyrus x bretschneideri] Back     alignment and taxonomy information
>gi|197253321|gb|ACH54095.1| SFBB34-alpha [Pyrus x bretschneideri] Back     alignment and taxonomy information
>gi|301069164|dbj|BAJ11961.1| MdFBX13 [Malus x domestica] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query379
TAIR|locus:2082410427 AT3G06240 "AT3G06240" [Arabido 0.625 0.555 0.253 4.2e-15
TAIR|locus:2100524390 AT3G52320 "AT3G52320" [Arabido 0.701 0.682 0.243 4e-12
TAIR|locus:2076196364 AT3G23880 "AT3G23880" [Arabido 0.804 0.837 0.244 3.6e-11
TAIR|locus:2010316416 AT1G12870 "AT1G12870" [Arabido 0.720 0.656 0.247 1.5e-10
TAIR|locus:2031845435 AT1G13200 "AT1G13200" [Arabido 0.757 0.659 0.231 2.3e-08
TAIR|locus:2114673397 AT3G49450 "AT3G49450" [Arabido 0.717 0.685 0.216 2.4e-08
TAIR|locus:2142539445 AT5G10340 "AT5G10340" [Arabido 0.844 0.719 0.245 3e-08
TAIR|locus:2094453361 AT3G25460 "AT3G25460" [Arabido 0.773 0.811 0.247 3.3e-08
TAIR|locus:2171509416 AT5G47300 "AT5G47300" [Arabido 0.680 0.620 0.247 3.5e-08
TAIR|locus:2041016420 AT2G43260 [Arabidopsis thalian 0.799 0.721 0.241 9.9e-08
TAIR|locus:2082410 AT3G06240 "AT3G06240" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 196 (74.1 bits), Expect = 4.2e-15, Sum P(2) = 4.2e-15
 Identities = 67/264 (25%), Positives = 126/264 (47%)

Query:   105 GPFDGIFCIHGPTNDRLILCNLETKESRTLPKR-RVVFPRFCSISDTCMGFGLDIMSNDY 163
             G  +G+ CI  P    + L N  T +S+ LP+  R     +   +    GFG D +++DY
Sbjct:   167 GSSNGLVCI-SPGEGAVFLYNPTTGDSKRLPENFRPKSVEYERDNFQTYGFGFDGLTDDY 225

Query:   164 KLVMIHSLWNEKRQEIYEFAHVAMYNLRTNSWRDLKSFKSDHYVMSFWSGSLYVDGVCYW 223
             KLV + +      ++I +    ++Y+L+ +SWR + +   +H   S+ SG ++ +G  +W
Sbjct:   226 KLVKLVAT----SEDILD---ASVYSLKADSWRRICNLNYEHNDGSYTSG-VHFNGAIHW 277

Query:   224 LSRFRNNDHAVILSFHLGNDVFEEVQEPYIPQS-----EPTIIGVYNHSLCVLLS-HNIE 277
             +     ++  V+++F +  + F E+  P   +         ++G  N  LCV+ S +++ 
Sbjct:   278 VFTESRHNQRVVVAFDIQTEEFREMPVPDEAEDCSHRFSNFVVGSLNGRLCVVNSCYDVH 337

Query:   278 NYYDIWVMKD----KCWIKQLSVGPFVGVQRPLGFWKKGAFFVVSTSGHLLLYDPNTQEM 333
             +  DIWVM +    K W  ++ +       +PL   K     ++   G L+LY+  T   
Sbjct:   338 D--DIWVMSEYGEAKSW-SRIRINLLYRSMKPLCSTKNDEEVLLELDGDLVLYNFETNAS 394

Query:   334 RDLGVTCFDVS----VHMYKESLI 353
              +LG+    +S     + Y ESLI
Sbjct:   395 SNLGICGVKLSDGFEANTYVESLI 418
GO:0003674 "molecular_function" evidence=ND
GO:0005634 "nucleus" evidence=ISM
GO:0008150 "biological_process" evidence=ND
TAIR|locus:2100524 AT3G52320 "AT3G52320" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2076196 AT3G23880 "AT3G23880" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2010316 AT1G12870 "AT1G12870" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2031845 AT1G13200 "AT1G13200" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2114673 AT3G49450 "AT3G49450" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2142539 AT5G10340 "AT5G10340" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2094453 AT3G25460 "AT3G25460" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2171509 AT5G47300 "AT5G47300" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2041016 AT2G43260 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
eugene3.00120932
hypothetical protein (367 aa)
(Populus trichocarpa)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query379
TIGR01640230 TIGR01640, F_box_assoc_1, F-box protein interactio 6e-19
pfam0064648 pfam00646, F-box, F-box domain 3e-07
smart0025641 smart00256, FBOX, A Receptor for Ubiquitination Ta 5e-07
pfam1293747 pfam12937, F-box-like, F-box-like 1e-05
>gnl|CDD|233502 TIGR01640, F_box_assoc_1, F-box protein interaction domain Back     alignment and domain information 
 Score = 84.3 bits (209), Expect = 6e-19
 Identities = 53/242 (21%), Positives = 90/242 (37%), Gaps = 28/242 (11%)

Query: 105 GPFDGIFCIHGPTNDRLILCNLETKESRTLPKRRVVFPRFCSISDTCMGFGLDIMSNDYK 164
            P DG+ C       RL++ N  T +SR LP  +    R  +        G D +   YK
Sbjct: 2   VPCDGLICFSY--GKRLVVWNPSTGQSRWLPTPK---SRRSNKESDTYFLGYDPIEKQYK 56

Query: 165 LVMIHSLWNEKRQEIYEFAHVAMYNLRTNSWRDLKSFKSDHYVMSFWSGSLYVDGVCYWL 224
           ++         R      +   +Y L +NSWR ++     H +    S  + ++GV Y+L
Sbjct: 57  VLCF-----SDRSGNRNQSEHQVYTLGSNSWRTIECSPPHHPL---KSRGVCINGVLYYL 108

Query: 225 SRFRNNDH-AVILSFHLGNDVFEE---VQEPYIPQSEPTIIGVYNHSLCVLLSHNIENYY 280
           +     +    I+SF + ++ F+E   +        +   +  Y   L VL      N +
Sbjct: 109 AYTLKTNPDYFIVSFDVSSERFKEFIPLPCGNSDSVDYLSLINYKGKLAVLKQKKDTNNF 168

Query: 281 DIWVMKDKC---WIKQLSVGP-----FVGVQRPLGFWKKGAFFVVSTSGH---LLLYDPN 329
           D+WV+ D     W K  +V        V      GF  KG   +     +   +  Y+  
Sbjct: 169 DLWVLNDAGKQEWSKLFTVPIPPLPDLVDDNFLSGFTDKGEIVLCCEDENPFYIFYYNVG 228

Query: 330 TQ 331
             
Sbjct: 229 EN 230

This model describes a large family of plant domains, with several hundred members in Arabidopsis thaliana. Most examples are found C-terminal to an F-box (pfam00646), a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes. Some members have two copies of this domain. Length = 230
>gnl|CDD|201368 pfam00646, F-box, F-box domain Back     alignment and domain information
>gnl|CDD|197608 smart00256, FBOX, A Receptor for Ubiquitination Targets Back     alignment and domain information
>gnl|CDD|221867 pfam12937, F-box-like, F-box-like Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 379
TIGR01640230 F_box_assoc_1 F-box protein interaction domain. Th 100.0
PF07734164 FBA_1: F-box associated; InterPro: IPR006527 This 99.66
PF08268129 FBA_3: F-box associated domain; InterPro: IPR01318 99.6
PLN03215373 ascorbic acid mannose pathway regulator 1; Provisi 99.53
PHA02713557 hypothetical protein; Provisional 99.21
KOG4441571 consensus Proteins containing BTB/POZ and Kelch do 99.13
PHA02713557 hypothetical protein; Provisional 99.1
PHA03098534 kelch-like protein; Provisional 99.09
PHA02790480 Kelch-like protein; Provisional 99.07
PLN02153341 epithiospecifier protein 99.06
KOG4441571 consensus Proteins containing BTB/POZ and Kelch do 99.04
PLN02193470 nitrile-specifier protein 98.98
TIGR03548323 mutarot_permut cyclically-permuted mutatrotase fam 98.95
TIGR03547346 muta_rot_YjhT mutatrotase, YjhT family. Members of 98.86
PF1293747 F-box-like: F-box-like; PDB: 1P22_A 2OVP_B 2OVR_B 98.85
PRK14131376 N-acetylneuraminic acid mutarotase; Provisional 98.82
smart0025641 FBOX A Receptor for Ubiquitination Targets. 98.77
PLN02153341 epithiospecifier protein 98.74
PF0064648 F-box: F-box domain; InterPro: IPR001810 The F-box 98.74
PHA03098534 kelch-like protein; Provisional 98.69
PLN02193470 nitrile-specifier protein 98.68
PHA02790480 Kelch-like protein; Provisional 98.53
TIGR03548323 mutarot_permut cyclically-permuted mutatrotase fam 98.53
KOG1230 521 consensus Protein containing repeated kelch motifs 98.39
PRK14131376 N-acetylneuraminic acid mutarotase; Provisional 98.36
TIGR03547346 muta_rot_YjhT mutatrotase, YjhT family. Members of 98.15
KOG4693392 consensus Uncharacterized conserved protein, conta 98.13
KOG4693392 consensus Uncharacterized conserved protein, conta 97.81
KOG0281499 consensus Beta-TrCP (transducin repeats containing 97.77
KOG0379 482 consensus Kelch repeat-containing proteins [Genera 97.53
KOG2120419 consensus SCF ubiquitin ligase, Skp2 component [Po 97.42
KOG0379 482 consensus Kelch repeat-containing proteins [Genera 97.26
KOG1230 521 consensus Protein containing repeated kelch motifs 96.91
KOG2997366 consensus F-box protein FBX9 [General function pre 96.01
KOG4152 830 consensus Host cell transcription factor HCFC1 [Ce 95.55
KOG2055514 consensus WD40 repeat protein [General function pr 95.41
PF02191250 OLF: Olfactomedin-like domain; InterPro: IPR003112 95.3
COG4257353 Vgb Streptogramin lyase [Defense mechanisms] 94.33
smart00284255 OLF Olfactomedin-like domains. 94.3
PF1396450 Kelch_6: Kelch motif 94.28
PF08450246 SGL: SMP-30/Gluconolaconase/LRE-like region; Inter 94.23
COG3055381 Uncharacterized protein conserved in bacteria [Fun 94.05
PF0134447 Kelch_1: Kelch motif; InterPro: IPR006652 Kelch is 93.37
PF1396450 Kelch_6: Kelch motif 92.98
TIGR01640230 F_box_assoc_1 F-box protein interaction domain. Th 92.85
PF0764649 Kelch_2: Kelch motif; InterPro: IPR011498 Kelch is 92.76
KOG0274537 consensus Cdc4 and related F-box and WD-40 protein 91.97
COG3055381 Uncharacterized protein conserved in bacteria [Fun 91.03
KOG4341483 consensus F-box protein containing LRR [General fu 88.96
smart0061247 Kelch Kelch domain. 88.65
COG4257353 Vgb Streptogramin lyase [Defense mechanisms] 88.32
PF1341849 Kelch_4: Galactose oxidase, central domain; PDB: 2 85.02
PF10282345 Lactonase: Lactonase, 7-bladed beta-propeller; Int 84.9
KOG3545249 consensus Olfactomedin and related extracellular m 83.86
KOG0310 487 consensus Conserved WD40 repeat-containing protein 83.83
PF07250243 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterP 83.23
PLN02772 398 guanylate kinase 83.16
PF1341849 Kelch_4: Galactose oxidase, central domain; PDB: 2 82.1
PF07893342 DUF1668: Protein of unknown function (DUF1668); In 81.26
>TIGR01640 F_box_assoc_1 F-box protein interaction domain Back     alignment and domain information 
Probab=100.00  E-value=5.6e-34  Score=250.59  Aligned_cols=214  Identities=23%  Similarity=0.368  Sum_probs=161.1

Q ss_pred             cceecceEEEecCCCCeEEEEecCCCceecCCCCcccCCCcccCCccEEEEeeecCCCceEEEEEEEEeecccccceeee
Q 039590          104 GGPFDGIFCIHGPTNDRLILCNLETKESRTLPKRRVVFPRFCSISDTCMGFGLDIMSNDYKLVMIHSLWNEKRQEIYEFA  183 (379)
Q Consensus       104 ~~s~~GLl~~~~~~~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~~g~d~~~~~ykVv~~~~~~~~~~~~~~~~~  183 (379)
                      ++|||||||+...  ..++||||+||+++.||+++......   ....++||||+.+++||||++......   .....+
T Consensus         1 ~~sCnGLlc~~~~--~~~~V~NP~T~~~~~LP~~~~~~~~~---~~~~~~~G~d~~~~~YKVv~~~~~~~~---~~~~~~   72 (230)
T TIGR01640         1 VVPCDGLICFSYG--KRLVVWNPSTGQSRWLPTPKSRRSNK---ESDTYFLGYDPIEKQYKVLCFSDRSGN---RNQSEH   72 (230)
T ss_pred             CcccceEEEEecC--CcEEEECCCCCCEEecCCCCCccccc---ccceEEEeecccCCcEEEEEEEeecCC---CCCccE
Confidence            4799999998865  46999999999999999776432111   112689999999999999999754211   112244


Q ss_pred             EEEEEEcCCCcccccccccCCcceeee-ccccEEECceEeeEeecCCCCc-cEEEEEECCCceEE-EecCCCCCC--CCC
Q 039590          184 HVAMYNLRTNSWRDLKSFKSDHYVMSF-WSGSLYVDGVCYWLSRFRNNDH-AVILSFHLGNDVFE-EVQEPYIPQ--SEP  258 (379)
Q Consensus       184 ~~~vyss~~~~W~~~~~~~~~~~~~~~-~~~~v~~~G~lywl~~~~~~~~-~~i~~fD~~~e~~~-~i~~P~~~~--~~~  258 (379)
                      +  ||++++++||.+...    ++... ...+|++||++||++....... ..|++||+.+|+|+ .+++|....  ...
T Consensus        73 ~--Vys~~~~~Wr~~~~~----~~~~~~~~~~v~~~G~lyw~~~~~~~~~~~~IvsFDl~~E~f~~~i~~P~~~~~~~~~  146 (230)
T TIGR01640        73 Q--VYTLGSNSWRTIECS----PPHHPLKSRGVCINGVLYYLAYTLKTNPDYFIVSFDVSSERFKEFIPLPCGNSDSVDY  146 (230)
T ss_pred             E--EEEeCCCCccccccC----CCCccccCCeEEECCEEEEEEEECCCCCcEEEEEEEcccceEeeeeecCccccccccc
Confidence            4  999999999999821    12222 3349999999999997653122 37999999999999 599987652  223


Q ss_pred             cEEEEECCeEEEEEEcCCCCEEEEEEEcC---CeEEEEEEECC--CCCc---ccceEEeeCCeEEEEEeC--CE-EEEEe
Q 039590          259 TIIGVYNHSLCVLLSHNIENYYDIWVMKD---KCWIKQLSVGP--FVGV---QRPLGFWKKGAFFVVSTS--GH-LLLYD  327 (379)
Q Consensus       259 ~~l~~~~G~L~l~~~~~~~~~i~iW~l~~---~~W~~~~~i~~--~~~~---~~~~~~~~~~~il~~~~~--~~-l~~yd  327 (379)
                      ..|++++|+|+++........++||+|++   ..|+++++|+.  ...+   ..|+++..+|+|++...+  +. +++||
T Consensus       147 ~~L~~~~G~L~~v~~~~~~~~~~IWvl~d~~~~~W~k~~~i~~~~~~~~~~~~~~~~~~~~g~I~~~~~~~~~~~~~~y~  226 (230)
T TIGR01640       147 LSLINYKGKLAVLKQKKDTNNFDLWVLNDAGKQEWSKLFTVPIPPLPDLVDDNFLSGFTDKGEIVLCCEDENPFYIFYYN  226 (230)
T ss_pred             eEEEEECCEEEEEEecCCCCcEEEEEECCCCCCceeEEEEEcCcchhhhhhheeEeEEeeCCEEEEEeCCCCceEEEEEe
Confidence            58999999999998864345699999997   57999999984  2223   247888889999998774  44 99999


Q ss_pred             CCCC
Q 039590          328 PNTQ  331 (379)
Q Consensus       328 ~~t~  331 (379)
                      ++++
T Consensus       227 ~~~~  230 (230)
T TIGR01640       227 VGEN  230 (230)
T ss_pred             ccCC
Confidence            9875

This model describes a large family of plant domains, with several hundred members in Arabidopsis thaliana. Most examples are found C-terminal to an F-box (pfam00646), a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes. Some members have two copies of this domain.
>PF07734 FBA_1: F-box associated; InterPro: IPR006527 This domain occurs in a diverse superfamily of genes in plants Back     alignment and domain information
>PF08268 FBA_3: F-box associated domain; InterPro: IPR013187 This domain occurs in a diverse superfamily of genes in plants Back     alignment and domain information
>PLN03215 ascorbic acid mannose pathway regulator 1; Provisional Back     alignment and domain information
>PHA02713 hypothetical protein; Provisional Back     alignment and domain information
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only] Back     alignment and domain information
>PHA02713 hypothetical protein; Provisional Back     alignment and domain information
>PHA03098 kelch-like protein; Provisional Back     alignment and domain information
>PHA02790 Kelch-like protein; Provisional Back     alignment and domain information
>PLN02153 epithiospecifier protein Back     alignment and domain information
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only] Back     alignment and domain information
>PLN02193 nitrile-specifier protein Back     alignment and domain information
>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein Back     alignment and domain information
>TIGR03547 muta_rot_YjhT mutatrotase, YjhT family Back     alignment and domain information
>PF12937 F-box-like: F-box-like; PDB: 1P22_A 2OVP_B 2OVR_B 2OVQ_B 1FS1_A 1FS2_C 1FQV_I 1LDK_E 2AST_B 2ASS_B Back     alignment and domain information
>PRK14131 N-acetylneuraminic acid mutarotase; Provisional Back     alignment and domain information
>smart00256 FBOX A Receptor for Ubiquitination Targets Back     alignment and domain information
>PLN02153 epithiospecifier protein Back     alignment and domain information
>PF00646 F-box: F-box domain; InterPro: IPR001810 The F-box domain was first described as a sequence motif found in cyclin-F that interacts with the protein SKP1 [, ] Back     alignment and domain information
>PHA03098 kelch-like protein; Provisional Back     alignment and domain information
>PLN02193 nitrile-specifier protein Back     alignment and domain information
>PHA02790 Kelch-like protein; Provisional Back     alignment and domain information
>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein Back     alignment and domain information
>KOG1230 consensus Protein containing repeated kelch motifs [General function prediction only] Back     alignment and domain information
>PRK14131 N-acetylneuraminic acid mutarotase; Provisional Back     alignment and domain information
>TIGR03547 muta_rot_YjhT mutatrotase, YjhT family Back     alignment and domain information
>KOG4693 consensus Uncharacterized conserved protein, contains kelch repeat [General function prediction only] Back     alignment and domain information
>KOG4693 consensus Uncharacterized conserved protein, contains kelch repeat [General function prediction only] Back     alignment and domain information
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown] Back     alignment and domain information
>KOG0379 consensus Kelch repeat-containing proteins [General function prediction only] Back     alignment and domain information
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG0379 consensus Kelch repeat-containing proteins [General function prediction only] Back     alignment and domain information
>KOG1230 consensus Protein containing repeated kelch motifs [General function prediction only] Back     alignment and domain information
>KOG2997 consensus F-box protein FBX9 [General function prediction only] Back     alignment and domain information
>KOG4152 consensus Host cell transcription factor HCFC1 [Cell cycle control, cell division, chromosome partitioning; Transcription] Back     alignment and domain information
>KOG2055 consensus WD40 repeat protein [General function prediction only] Back     alignment and domain information
>PF02191 OLF: Olfactomedin-like domain; InterPro: IPR003112 The olfactomedin-domain was first identified in olfactomedin, an extracellular matrix protein of the olfactory neuroepithelium [] Back     alignment and domain information
>COG4257 Vgb Streptogramin lyase [Defense mechanisms] Back     alignment and domain information
>smart00284 OLF Olfactomedin-like domains Back     alignment and domain information
>PF13964 Kelch_6: Kelch motif Back     alignment and domain information
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species Back     alignment and domain information
>COG3055 Uncharacterized protein conserved in bacteria [Function unknown] Back     alignment and domain information
>PF01344 Kelch_1: Kelch motif; InterPro: IPR006652 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified [] Back     alignment and domain information
>PF13964 Kelch_6: Kelch motif Back     alignment and domain information
>TIGR01640 F_box_assoc_1 F-box protein interaction domain Back     alignment and domain information
>PF07646 Kelch_2: Kelch motif; InterPro: IPR011498 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified [] Back     alignment and domain information
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only] Back     alignment and domain information
>COG3055 Uncharacterized protein conserved in bacteria [Function unknown] Back     alignment and domain information
>KOG4341 consensus F-box protein containing LRR [General function prediction only] Back     alignment and domain information
>smart00612 Kelch Kelch domain Back     alignment and domain information
>COG4257 Vgb Streptogramin lyase [Defense mechanisms] Back     alignment and domain information
>PF13418 Kelch_4: Galactose oxidase, central domain; PDB: 2UVK_B Back     alignment and domain information
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3 Back     alignment and domain information
>KOG3545 consensus Olfactomedin and related extracellular matrix glycoproteins [Extracellular structures] Back     alignment and domain information
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown] Back     alignment and domain information
>PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes Back     alignment and domain information
>PLN02772 guanylate kinase Back     alignment and domain information
>PF13418 Kelch_4: Galactose oxidase, central domain; PDB: 2UVK_B Back     alignment and domain information
>PF07893 DUF1668: Protein of unknown function (DUF1668); InterPro: IPR012871 The hypothetical proteins found in this family are expressed by Oryza sativa (Rice) and are of unknown function Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query379
1fs1_A53 SKP2 F-BOX, cyclin A/CDK2-associated P19; F-BOX, L 3e-05
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 9e-05
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 9e-05
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 6e-04
2ast_B336 S-phase kinase-associated protein 2; SCF-substrate 1e-04
2e31_A297 FBS1, F-box only protein 2; ubiquitin, SCF, ubiqui 2e-04
3l2o_B312 F-box only protein 4; small G protein fold, UBL co 6e-04
>1fs1_A SKP2 F-BOX, cyclin A/CDK2-associated P19; F-BOX, LRR, leucine-rich repeat, SCF, ubiquitin, ubiquitin protein ligase; 1.80A {Homo sapiens} SCOP: a.158.1.1 PDB: 1ldk_E Length = 53 Back     alignment and structure
 Score = 40.3 bits (95), Expect = 3e-05
 Identities = 10/38 (26%), Positives = 21/38 (55%)

Query: 7  NFPEDVMIEVLSRLSVKSLLRFKCVCREWCSLFENPSF 44
          + P+++++ + S L +  LL+   VC+ W  L  + S 
Sbjct: 11 SLPDELLLGIFSCLCLPELLKVSGVCKRWYRLASDESL 48
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A Length = 336 Back     alignment and structure
>2e31_A FBS1, F-box only protein 2; ubiquitin, SCF, ubiquitin ligase, FBS1; 2.40A {Mus musculus} PDB: 2e32_A Length = 297 Back     alignment and structure
>3l2o_B F-box only protein 4; small G protein fold, UBL conjugation pathway, ubiquitin Pro ligase, protein binding-cell cycle complex; 2.80A {Homo sapiens} Length = 312 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query379
3ii7_A306 Kelch-like protein 7; protein-binding, kelch-repea 99.35
4asc_A315 Kelch repeat and BTB domain-containing protein 5; 99.33
2woz_A318 Kelch repeat and BTB domain-containing protein 10; 99.32
2xn4_A302 Kelch-like protein 2; structural protein, cytoskel 99.32
1zgk_A308 Kelch-like ECH-associated protein 1; beta-propelle 99.31
2vpj_A301 Kelch-like protein 12; adaptor protein, WNT signal 99.27
2uvk_A357 YJHT; unknown function, hypothetical protein, sial 99.26
3ii7_A306 Kelch-like protein 7; protein-binding, kelch-repea 99.21
2xn4_A302 Kelch-like protein 2; structural protein, cytoskel 99.19
2vpj_A301 Kelch-like protein 12; adaptor protein, WNT signal 99.17
4asc_A315 Kelch repeat and BTB domain-containing protein 5; 99.16
1zgk_A308 Kelch-like ECH-associated protein 1; beta-propelle 99.14
1fs1_A53 SKP2 F-BOX, cyclin A/CDK2-associated P19; F-BOX, L 99.02
2e31_A297 FBS1, F-box only protein 2; ubiquitin, SCF, ubiqui 99.01
2zwa_A695 Leucine carboxyl methyltransferase 2; HET: SAH CIT 98.99
2woz_A318 Kelch repeat and BTB domain-containing protein 10; 98.98
2uvk_A357 YJHT; unknown function, hypothetical protein, sial 98.92
3v7d_B464 Cell division control protein 4; WD 40 domain, pho 98.56
2ovr_B445 FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 98.54
1p22_A435 F-BOX/WD-repeat protein 1A; ubiquitination, degrad 98.51
1k3i_A 656 Galactose oxidase precursor; blade beta propeller, 98.26
1k3i_A 656 Galactose oxidase precursor; blade beta propeller, 98.25
2zwa_A695 Leucine carboxyl methyltransferase 2; HET: SAH CIT 98.15
3l2o_B312 F-box only protein 4; small G protein fold, UBL co 97.9
2ast_B336 S-phase kinase-associated protein 2; SCF-substrate 97.36
2p1m_B 594 Transport inhibitor response 1 protein; F-BOX, leu 96.58
3ogk_B 592 Coronatine-insensitive protein 1; leucine rich rep 96.12
2z2n_A299 Virginiamycin B lyase; seven-bladed beta-propeller 95.53
3jrp_A379 Fusion protein of protein transport protein SEC13 94.61
3g4e_A297 Regucalcin; six bladed beta-propeller, gluconolcat 93.49
1q7f_A286 NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL 92.54
3jro_A 753 Fusion protein of protein transport protein SEC13 92.46
1q7f_A286 NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL 92.27
4gga_A420 P55CDC, cell division cycle protein 20 homolog; ce 91.7
3dsm_A328 Uncharacterized protein bacuni_02894; seven_blated 91.27
3mbr_X243 Glutamine cyclotransferase; beta-propeller; 1.44A 91.26
1l0q_A 391 Surface layer protein; SLP, S-layer, 7-bladed beta 89.89
1npe_A267 Nidogen, entactin; glycoprotein, basement membrane 89.18
3ei3_B383 DNA damage-binding protein 2; UV-damage, DDB, nucl 89.15
1gxr_A337 ESG1, transducin-like enhancer protein 1; transcri 88.72
3nol_A262 Glutamine cyclotransferase; beta-propeller, glutam 88.45
4gqb_B344 Methylosome protein 50; TIM barrel, beta-propeller 88.17
2qc5_A300 Streptogramin B lactonase; beta propeller, lyase; 87.48
3fm0_A345 Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r 87.44
2z2n_A299 Virginiamycin B lyase; seven-bladed beta-propeller 87.23
1rwi_B270 Serine/threonine-protein kinase PKND; beta propell 87.21
3u4y_A331 Uncharacterized protein; structural genomics, PSI- 86.17
3q7m_A 376 Lipoprotein YFGL, BAMB; beta-propeller, BAM comple 85.97
3e5z_A296 Putative gluconolactonase; X-RAY NESG Q9RXN3 gluco 85.66
3m0c_C 791 LDL receptor, low-density lipoprotein receptor; pr 85.53
2iwa_A266 Glutamine cyclotransferase; pyroglutamate, acyltra 85.39
3k26_A366 Polycomb protein EED; WD40, structural genomics, N 85.22
3dwl_C377 Actin-related protein 2/3 complex subunit 1; prope 85.18
3nok_A268 Glutaminyl cyclase; beta-propeller, cyclotransfera 85.04
3hfq_A 347 Uncharacterized protein LP_2219; Q88V64_lacpl, NES 84.31
3dsm_A328 Uncharacterized protein bacuni_02894; seven_blated 84.27
3q7m_A 376 Lipoprotein YFGL, BAMB; beta-propeller, BAM comple 83.76
1pjx_A314 Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotries 83.76
3zwl_B369 Eukaryotic translation initiation factor 3 subuni; 83.38
3v65_B386 Low-density lipoprotein receptor-related protein; 83.15
1k8k_C 372 P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta- 82.05
4e54_B435 DNA damage-binding protein 2; beta barrel, double 81.98
>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens} Back     alignment and structure
Probab=99.35  E-value=3.1e-10  Score=102.70  Aligned_cols=212  Identities=12%  Similarity=0.052  Sum_probs=136.4

Q ss_pred             ccceecceEEEecC----CCCeEEEEecCCCceecCCCCcccCCCcccCCccEEEEeeecCCCceEEEEEEEEeeccccc
Q 039590          103 LGGPFDGIFCIHGP----TNDRLILCNLETKESRTLPKRRVVFPRFCSISDTCMGFGLDIMSNDYKLVMIHSLWNEKRQE  178 (379)
Q Consensus       103 ~~~s~~GLl~~~~~----~~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~~g~d~~~~~ykVv~~~~~~~~~~~~  178 (379)
                      ..+..+|.|.+.+.    ..+.+.++||.|++|..+|+++..+..+       ....++     =+++.+......    
T Consensus        50 ~~~~~~~~lyv~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~-------~~~~~~-----~~iyv~GG~~~~----  113 (306)
T 3ii7_A           50 ACVFWDNVVYILGGSQLFPIKRMDCYNVVKDSWYSKLGPPTPRDSL-------AACAAE-----GKIYTSGGSEVG----  113 (306)
T ss_dssp             EEEEETTEEEEECCBSSSBCCEEEEEETTTTEEEEEECCSSCCBSC-------EEEEET-----TEEEEECCBBTT----
T ss_pred             EEEEECCEEEEEeCCCCCCcceEEEEeCCCCeEEECCCCCccccce-------eEEEEC-----CEEEEECCCCCC----
Confidence            34445676666632    2347999999999999998877554432       111221     134444332111    


Q ss_pred             ceeeeEEEEEEcCCCcccccccccCCcceeeeccccEEECceEeeEeecCCCC-----ccEEEEEECCCceEEEec-CCC
Q 039590          179 IYEFAHVAMYNLRTNSWRDLKSFKSDHYVMSFWSGSLYVDGVCYWLSRFRNND-----HAVILSFHLGNDVFEEVQ-EPY  252 (379)
Q Consensus       179 ~~~~~~~~vyss~~~~W~~~~~~~~~~~~~~~~~~~v~~~G~lywl~~~~~~~-----~~~i~~fD~~~e~~~~i~-~P~  252 (379)
                      ......+++|+..+++|+.++    .++.....+.++.++|.+|.+.+.....     ...+..||+.+++|+.++ +|.
T Consensus       114 ~~~~~~~~~~d~~~~~W~~~~----~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~  189 (306)
T 3ii7_A          114 NSALYLFECYDTRTESWHTKP----SMLTQRCSHGMVEANGLIYVCGGSLGNNVSGRVLNSCEVYDPATETWTELCPMIE  189 (306)
T ss_dssp             BSCCCCEEEEETTTTEEEEEC----CCSSCCBSCEEEEETTEEEEECCEESCTTTCEECCCEEEEETTTTEEEEECCCSS
T ss_pred             CcEeeeEEEEeCCCCceEeCC----CCcCCcceeEEEEECCEEEEECCCCCCCCcccccceEEEeCCCCCeEEECCCccc
Confidence            112234459999999999998    3433334566788999999998754211     456999999999999985 333


Q ss_pred             CCCCCCcEEEEECCeEEEEEEcCCC-CEEEEEEEcC--CeEEEEEEECCCCCcccceEEeeCCeEEEEEe------CCEE
Q 039590          253 IPQSEPTIIGVYNHSLCVLLSHNIE-NYYDIWVMKD--KCWIKQLSVGPFVGVQRPLGFWKKGAFFVVST------SGHL  323 (379)
Q Consensus       253 ~~~~~~~~l~~~~G~L~l~~~~~~~-~~i~iW~l~~--~~W~~~~~i~~~~~~~~~~~~~~~~~il~~~~------~~~l  323 (379)
                      ..  .....+..+|+|++++..... ..-++|.++-  ..|+.+..++. +... .-.+.-++.|+++.+      ...+
T Consensus       190 ~r--~~~~~~~~~~~i~v~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~-~r~~-~~~~~~~~~i~v~GG~~~~~~~~~~  265 (306)
T 3ii7_A          190 AR--KNHGLVFVKDKIFAVGGQNGLGGLDNVEYYDIKLNEWKMVSPMPW-KGVT-VKCAAVGSIVYVLAGFQGVGRLGHI  265 (306)
T ss_dssp             CC--BSCEEEEETTEEEEECCEETTEEBCCEEEEETTTTEEEECCCCSC-CBSC-CEEEEETTEEEEEECBCSSSBCCEE
T ss_pred             hh--hcceEEEECCEEEEEeCCCCCCCCceEEEeeCCCCcEEECCCCCC-Cccc-eeEEEECCEEEEEeCcCCCeeeeeE
Confidence            32  234677889999999865321 1234666654  89998754432 1212 222333678888764      2579


Q ss_pred             EEEeCCCCcEEEeEE
Q 039590          324 LLYDPNTQEMRDLGV  338 (379)
Q Consensus       324 ~~yd~~t~~~~~v~~  338 (379)
                      ..||+++++|+.+.-
T Consensus       266 ~~yd~~~~~W~~~~~  280 (306)
T 3ii7_A          266 LEYNTETDKWVANSK  280 (306)
T ss_dssp             EEEETTTTEEEEEEE
T ss_pred             EEEcCCCCeEEeCCC
Confidence            999999999999873
>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens} Back     alignment and structure
>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus} Back     alignment and structure
>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens} Back     alignment and structure
>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A Back     alignment and structure
>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens} Back     alignment and structure
>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli} Back     alignment and structure
>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens} Back     alignment and structure
>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens} Back     alignment and structure
>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens} Back     alignment and structure
>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens} Back     alignment and structure
>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A Back     alignment and structure
>1fs1_A SKP2 F-BOX, cyclin A/CDK2-associated P19; F-BOX, LRR, leucine-rich repeat, SCF, ubiquitin, ubiquitin protein ligase; 1.80A {Homo sapiens} SCOP: a.158.1.1 PDB: 1ldk_E Back     alignment and structure
>2e31_A FBS1, F-box only protein 2; ubiquitin, SCF, ubiquitin ligase, FBS1; 2.40A {Mus musculus} PDB: 2e32_A Back     alignment and structure
>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A* Back     alignment and structure
>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus} Back     alignment and structure
>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli} Back     alignment and structure
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B* Back     alignment and structure
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B* Back     alignment and structure
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 Back     alignment and structure
>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A Back     alignment and structure
>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A Back     alignment and structure
>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A* Back     alignment and structure
>3l2o_B F-box only protein 4; small G protein fold, UBL conjugation pathway, ubiquitin Pro ligase, protein binding-cell cycle complex; 2.80A {Homo sapiens} Back     alignment and structure
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A Back     alignment and structure
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Back     alignment and structure
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Back     alignment and structure
>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A* Back     alignment and structure
>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae} Back     alignment and structure
>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B Back     alignment and structure
>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1 Back     alignment and structure
>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae} Back     alignment and structure
>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1 Back     alignment and structure
>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A Back     alignment and structure
>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis} Back     alignment and structure
>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris} Back     alignment and structure
>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3 Back     alignment and structure
>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1 Back     alignment and structure
>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B* Back     alignment and structure
>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A Back     alignment and structure
>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A Back     alignment and structure
>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens} Back     alignment and structure
>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii} Back     alignment and structure
>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens} Back     alignment and structure
>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A* Back     alignment and structure
>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A Back     alignment and structure
>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans} Back     alignment and structure
>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A Back     alignment and structure
>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans} Back     alignment and structure
>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens} Back     alignment and structure
>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A* Back     alignment and structure
>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A Back     alignment and structure
>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe} Back     alignment and structure
>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus} Back     alignment and structure
>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum} Back     alignment and structure
>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis} Back     alignment and structure
>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A Back     alignment and structure
>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ... Back     alignment and structure
>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae} Back     alignment and structure
>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus} Back     alignment and structure
>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C Back     alignment and structure
>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B* Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 379
d1fs1a141 a.158.1.1 (A:109-149) Skp2 {Human (Homo sapiens) [ 7e-08
d1p22a1118 a.158.1.1 (A:135-252) F-box/WD-repeat protein 1 (b 4e-04
d2ovrb1102 a.158.1.1 (B:2263-2364) F-box/WD repeat-containing 5e-04
d1nexb1100 a.158.1.1 (B:270-369) Cdc4 F-box and linker domain 0.003
>d1fs1a1 a.158.1.1 (A:109-149) Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 41 Back     information, alignment and structure

class: All alpha proteins
fold: F-box domain
superfamily: F-box domain
family: F-box domain
domain: Skp2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.2 bits (110), Expect = 7e-08
 Identities = 10/38 (26%), Positives = 21/38 (55%)

Query: 7  NFPEDVMIEVLSRLSVKSLLRFKCVCREWCSLFENPSF 44
          + P+++++ + S L +  LL+   VC+ W  L  + S 
Sbjct: 3  SLPDELLLGIFSCLCLPELLKVSGVCKRWYRLASDESL 40
>d1p22a1 a.158.1.1 (A:135-252) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 118 Back     information, alignment and structure
>d2ovrb1 a.158.1.1 (B:2263-2364) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 102 Back     information, alignment and structure
>d1nexb1 a.158.1.1 (B:270-369) Cdc4 F-box and linker domains {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 100 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query379
d1fs1a141 Skp2 {Human (Homo sapiens) [TaxId: 9606]} 99.24
d1zgka1288 Kelch-like ECH-associated protein 1, KEAP1 {Human 98.8
d1zgka1288 Kelch-like ECH-associated protein 1, KEAP1 {Human 98.7
d2ovrb1102 F-box/WD repeat-containing protein 7, FBXW7 {Human 98.56
d1nexb1100 Cdc4 F-box and linker domains {Baker's yeast (Sacc 98.52
d1p22a1118 F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom 98.3
d1k3ia3 387 Galactose oxidase, central domain {Fungi (Fusarium 98.03
d1k3ia3387 Galactose oxidase, central domain {Fungi (Fusarium 97.85
d2ghsa1295 Regucalcin {Agrobacterium tumefaciens [TaxId: 358] 94.35
d1q7fa_279 Brain tumor cg10719-pa {Fruit fly (Drosophila mela 90.12
d2dg1a1319 Lactonase Drp35 {Staphylococcus aureus [TaxId: 128 89.28
d2ghsa1 295 Regucalcin {Agrobacterium tumefaciens [TaxId: 358] 80.41
>d1fs1a1 a.158.1.1 (A:109-149) Skp2 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
class: All alpha proteins
fold: F-box domain
superfamily: F-box domain
family: F-box domain
domain: Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.24  E-value=1e-12  Score=78.84  Aligned_cols=38  Identities=26%  Similarity=0.713  Sum_probs=36.3

Q ss_pred             CCCHHHHHHHHhcCCcchhhhheeccccccccccChhh
Q 039590            7 NFPEDVMIEVLSRLSVKSLLRFKCVCREWCSLFENPSF   44 (379)
Q Consensus         7 ~LP~Dll~~IL~rLP~~sl~r~r~VcK~W~~li~s~~F   44 (379)
                      .||+|++.+||++||+++++|+++|||+|+++++++.+
T Consensus         3 ~LP~eil~~If~~L~~~dl~~~~~Vcr~w~~l~~~~~l   40 (41)
T d1fs1a1           3 SLPDELLLGIFSCLCLPELLKVSGVCKRWYRLASDESL   40 (41)
T ss_dssp             SSCHHHHHHHHTTSCGGGHHHHHTTCHHHHHHHTCGGG
T ss_pred             cCCHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCccc
Confidence            59999999999999999999999999999999998874
>d1zgka1 b.68.11.1 (A:322-609) Kelch-like ECH-associated protein 1, KEAP1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1zgka1 b.68.11.1 (A:322-609) Kelch-like ECH-associated protein 1, KEAP1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2ovrb1 a.158.1.1 (B:2263-2364) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1nexb1 a.158.1.1 (B:270-369) Cdc4 F-box and linker domains {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1p22a1 a.158.1.1 (A:135-252) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]} Back     information, alignment and structure
>d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]} Back     information, alignment and structure
>d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]} Back     information, alignment and structure
>d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Back     information, alignment and structure
>d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]} Back     information, alignment and structure
>d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]} Back     information, alignment and structure