Citrus Sinensis ID: 039625

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------24
MDDCKNSTSNIGLRSLVVASIILLMMLTIRKVTKQDLEDMYQPPFKSCVKESHVSSVICSYNRVIGIPTCADPDLLKGVIKSQWGLDWLKNMRLGFFDGDPKSQPLGNLGPSDVHTDDHKSLALDAAKQGIDSLDNKGALPLSSNNTKNLAVIGSNANATNRRLLIEQAAKAAGTADVVVMVVGLDQSIEAEGLDKENLTLHGYQEKLVMEVANATKGTMILVVMAAGNVDVSFCKDQ
ccccccccccccccccccccHHHHHHHHcccccHHHHHHHccHHHHHHHHHccccEEEEcccccccccccccHHHHHHHHHHHHccccEEEEEcEEEEccccccccccccccccccHHHHHHHHHHHHHccHHcccccccccccccccccHHcccccccHHHHHHHHHHHHHHccccEEEEEEcccccccccccccccccccHHHHHHHHHHHHHccccEEEEEEccccccccccccc
ccccccccccccccEEEEEEEEHHHHHccHcccHHHHHHHccccHHHHHHHccccEEEEEEccccccccHccccccHHHHHHHHHHccEEEEEcccccccccccccccccHHHcccHHHHHHHHHHHHccEEEEEccccccccHccccEEEEEcccccccHHHHHHHHHHHHHccccEEEEEEcccccHHHcccccccccccHHHHHHHHHHHHHccccEEEEEEccccccHHHcccc
mddcknstsniglRSLVVASIILLMMLTIRKVTKqdledmyqppfkscvkeshvsSVICSynrvigiptcadpdllkgviksqwgldwlknmrlgffdgdpksqplgnlgpsdvhtddhkSLALDAAKQGIdsldnkgalplssnntknlavigsnanATNRRLLIEQAAKAAGTADVVVMVVGLDqsieaegldkenltlhgyQEKLVMEVANATKGTMILVVMAAgnvdvsfckdq
mddcknstsniglrsLVVASIILLMMLTIRKVTKQDLEDMYQPPfkscvkeshVSSVICSYNRVIGIPTCADPDLLKGVIKSQWGLDWLKNMRLGFFDGDPKSQPLGNLGPSDVHTDDHKSLALDAAKQGIDSLDNKGALPLSSNNTKNLAVIGSNANATNRRLLIEQAAKAAGTADVVVMVVGLDQSIEAEGLDKENLTLHGYQEKLVMEVANATKGTMILVVMAAGNVDVSFCKDQ
MDDCKNSTSNIGLRSLVVASIILLMMLTIRKVTKQDLEDMYQPPFKSCVKESHVSSVICSYNRVIGIPTCADPDLLKGVIKSQWGLDWLKNMRLGFFDGDPKSQPLGNLGPSDVHTDDHKSLALDAAKQGIDSLDNKGALPLSSNNTKNLAVIGSNANATNRRLLIEQAAKAAGTADVVVMVVGLDQSIEAEGLDKENLTLHGYQEKLVMEVANATKGTMILVVMAAGNVDVSFCKDQ
**********IGLRSLVVASIILLMMLTIRKVTKQDLEDMYQPPFKSCVKESHVSSVICSYNRVIGIPTCADPDLLKGVIKSQWGLDWLKNMRLGFFD***************************************************LAVIGSNANATNRRLLIEQAAKAAGTADVVVMVVGLDQSIEAEGLDKENLTLHGYQEKLVMEVANATKGTMILVVMAAGNVDVSFC***
**DCKNSTSNIGLRSLVVASIILLMMLTIRKVTKQDLEDMYQPPFKSCVKESHVSSVICSYNRVIGIPTCADPDLLKGVIKSQWGLDWLKNMRLGFFDGDPKSQPLGNLGPSDVHTDDHKSLALDAAKQGIDSLDNKGALPLSSNNTKNLAVIGSNANATNRRLLIEQAAKAAGTADVVVMVVGLDQSIEAEGLDKENLTLHGYQEKLVMEVANATKGTMILVVMAAGNVDVSFC***
*********NIGLRSLVVASIILLMMLTIRKVTKQDLEDMYQPPFKSCVKESHVSSVICSYNRVIGIPTCADPDLLKGVIKSQWGLDWLKNMRLGFFDGDPKSQPLGNLGPSDVHTDDHKSLALDAAKQGIDSLDNKGALPLSSNNTKNLAVIGSNANATNRRLLIEQAAKAAGTADVVVMVVGLDQSIEAEGLDKENLTLHGYQEKLVMEVANATKGTMILVVMAAGNVDVSFCKDQ
***CKNSTSNIGLRSLVVASIILLMMLTIRKVTKQDLEDMYQPPFKSCVKESHVSSVICSYNRVIGIPTCADPDLLKGVIKSQWGLDWLKNMRLGFFDGDPKSQPLGNLGPSDVHTDDHKSLALDAAKQGIDSLDNKGALPLSSNNTKNLAVIGSNANATNRRLLIEQAAKAAGTADVVVMVVGLDQSIEAEGLDKENLTLHGYQEKLVMEVANATKGTMILVVMAAGNVDVSFC***
iiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiiiiiHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooo
SSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooo
oooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
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MDDCKNSTSNIGLRSLVVASIILLMMLTIRKVTKQDLEDMYQPPFKSCVKESHVSSVICSYNRVIGIPTCADPDLLKGVIKSQWGLDWLKNMRLGFFDGDPKSQPLGNLGPSDVHTDDHKSLALDAAKQGIDSLDNKGALPLSSNNTKNLAVIGSNANATNRRLLIEQAAKAAGTADVVVMVVGLDQSIEAEGLDKENLTLHGYQEKLVMEVANATKGTMILVVMAAGNVDVSFCKDQ
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query238 2.2.26 [Sep-21-2011]
Q9LJN4 781 Probable beta-D-xylosidas yes no 0.613 0.186 0.516 7e-43
Q9FLG1 784 Beta-D-xylosidase 4 OS=Ar no no 0.634 0.192 0.425 5e-32
A5JTQ3 774 Beta-xylosidase/alpha-L-a N/A no 0.609 0.187 0.431 4e-30
Q9LXD6 773 Beta-D-xylosidase 3 OS=Ar no no 0.613 0.188 0.437 8e-30
A5JTQ2 774 Beta-xylosidase/alpha-L-a N/A no 0.600 0.184 0.443 1e-29
Q94KD8 768 Probable beta-D-xylosidas no no 0.613 0.190 0.421 2e-28
P83344 461 Putative beta-D-xylosidas N/A no 0.672 0.347 0.383 1e-27
Q9FGY1 774 Beta-D-xylosidase 1 OS=Ar no no 0.600 0.184 0.408 8e-24
Q9SGZ5 767 Probable beta-D-xylosidas no no 0.600 0.186 0.357 5e-21
Q9LXA8 792 Probable beta-D-xylosidas no no 0.617 0.185 0.347 1e-19
>sp|Q9LJN4|BXL5_ARATH Probable beta-D-xylosidase 5 OS=Arabidopsis thaliana GN=BXL5 PE=2 SV=2 Back     alignment and function desciption
 Score =  173 bits (439), Expect = 7e-43,   Method: Compositional matrix adjust.
 Identities = 96/186 (51%), Positives = 114/186 (61%), Gaps = 40/186 (21%)

Query: 92  MRLGFFDGDPKSQPLGNLGPSDVHTDDHKSLALDAAKQGIDSLDNKGALPLSSNNTKNLA 151
           MRLGFFDGDPKS P GNLGPSDV + DH+ LAL+AAKQGI  L+N+G LPL     K LA
Sbjct: 358 MRLGFFDGDPKSLPFGNLGPSDVCSKDHQMLALEAAKQGIVLLENRGDLPLPKTTVKKLA 417

Query: 152 VIGSNANATN----------------------------------------RRLLIEQAAK 171
           VIG NANAT                                          + LI  A K
Sbjct: 418 VIGPNANATKVMISNYAGVPCKYTSPIQGLQKYVPEKIVYEPGCKDVKCGDQTLISAAVK 477

Query: 172 AAGTADVVVMVVGLDQSIEAEGLDKENLTLHGYQEKLVMEVANATKGTMILVVMAAGNVD 231
           A   ADV V+VVGLDQ++EAEGLD+ NLTL GYQEKLV +VANA K T++LV+M+AG +D
Sbjct: 478 AVSEADVTVLVVGLDQTVEAEGLDRVNLTLPGYQEKLVRDVANAAKKTVVLVIMSAGPID 537

Query: 232 VSFCKD 237
           +SF K+
Sbjct: 538 ISFAKN 543

Arabidopsis thaliana (taxid: 3702)
EC: 3EC: .EC: 2EC: .EC: 1EC: .EC: -
>sp|Q9FLG1|BXL4_ARATH Beta-D-xylosidase 4 OS=Arabidopsis thaliana GN=BXL4 PE=1 SV=1 Back     alignment and function description
>sp|A5JTQ3|XYL2_MEDSV Beta-xylosidase/alpha-L-arabinofuranosidase 2 OS=Medicago sativa subsp. varia GN=Xyl2 PE=2 SV=1 Back     alignment and function description
>sp|Q9LXD6|BXL3_ARATH Beta-D-xylosidase 3 OS=Arabidopsis thaliana GN=BXL3 PE=1 SV=1 Back     alignment and function description
>sp|A5JTQ2|XYL1_MEDSV Beta-xylosidase/alpha-L-arabinofuranosidase 1 (Fragment) OS=Medicago sativa subsp. varia GN=Xyl1 PE=1 SV=1 Back     alignment and function description
>sp|Q94KD8|BXL2_ARATH Probable beta-D-xylosidase 2 OS=Arabidopsis thaliana GN=BXL2 PE=2 SV=1 Back     alignment and function description
>sp|P83344|XYNB_PRUPE Putative beta-D-xylosidase (Fragment) OS=Prunus persica PE=2 SV=1 Back     alignment and function description
>sp|Q9FGY1|BXL1_ARATH Beta-D-xylosidase 1 OS=Arabidopsis thaliana GN=BXL1 PE=1 SV=1 Back     alignment and function description
>sp|Q9SGZ5|BXL7_ARATH Probable beta-D-xylosidase 7 OS=Arabidopsis thaliana GN=BXL7 PE=2 SV=2 Back     alignment and function description
>sp|Q9LXA8|BXL6_ARATH Probable beta-D-xylosidase 6 OS=Arabidopsis thaliana GN=BXL6 PE=2 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query238
297834874 865 beta-1,4-xylosidase [Arabidopsis lyrata 0.869 0.239 0.457 3e-58
15230897 781 putative beta-D-xylosidase 5 [Arabidopsi 0.613 0.186 0.516 4e-41
9294427 876 beta-1,4-xylosidase [Arabidopsis thalian 0.613 0.166 0.516 4e-41
296083056 896 unnamed protein product [Vitis vinifera] 0.613 0.162 0.540 6e-40
147844622 925 hypothetical protein VITISV_035506 [Viti 0.613 0.157 0.540 7e-40
225428983 818 PREDICTED: probable beta-D-xylosidase 5- 0.613 0.178 0.540 8e-40
255573163 810 Beta-glucosidase, putative [Ricinus comm 0.600 0.176 0.527 1e-39
350534908 770 beta-D-xylosidase 1 precursor [Solanum l 0.865 0.267 0.371 5e-39
357444469 781 Xylosidase [Medicago truncatula] gi|3554 0.605 0.184 0.524 7e-34
356574315 901 PREDICTED: LOW QUALITY PROTEIN: probable 0.605 0.159 0.524 3e-33
>gi|297834874|ref|XP_002885319.1| beta-1,4-xylosidase [Arabidopsis lyrata subsp. lyrata] gi|297331159|gb|EFH61578.1| beta-1,4-xylosidase [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
 Score =  230 bits (587), Expect = 3e-58,   Method: Compositional matrix adjust.
 Identities = 139/304 (45%), Positives = 164/304 (53%), Gaps = 97/304 (31%)

Query: 31  KVTKQDLEDMYQPPFKSCVKESHVSSVICSYNRVIGIPTCADPDLLKGVIKSQWGLD--- 87
           KVTKQDLED YQPPFKSCV+E  VSSV+CSYNRV GIPTCADP+LL+GVI+ QW LD   
Sbjct: 229 KVTKQDLEDTYQPPFKSCVEEGDVSSVMCSYNRVNGIPTCADPNLLRGVIRGQWRLDGYI 288

Query: 88  ---------------WLK---NMRLGFFDG------------------------------ 99
                          + K   NM  G F G                              
Sbjct: 289 VSDCDSIQVYFDDIHYTKTRLNMNCGDFLGKYTENAVKLKKLNGSEVDEALIYNYIVLMR 348

Query: 100 ------DPKSQPLGNLGPSDVHTDDHKSLALDAAKQGIDSLDNKGALPLSSNNTKNLAVI 153
                 DPKS P G LGPSDV + DH+ LAL+AAKQGI  L+N+G LPLS    K +AVI
Sbjct: 349 LGFFDGDPKSLPFGQLGPSDVCSKDHQMLALEAAKQGIVLLENRGDLPLSKTAVKKIAVI 408

Query: 154 GSNANATN----------------------------------------RRLLIEQAAKAA 173
           G NANAT                                          + LI  A KA 
Sbjct: 409 GPNANATKVMISNYAGVPCKYTSPLQGLQKYVPEKVVYEPGCKDVNCGEQTLISAAVKAV 468

Query: 174 GTADVVVMVVGLDQSIEAEGLDKENLTLHGYQEKLVMEVANATKGTMILVVMAAGNVDVS 233
             ADV V+VVGLDQ++EAEGLD+ NLTL GYQEKLV +VANA K T++LV+M+AG +D+S
Sbjct: 469 SEADVTVLVVGLDQTVEAEGLDRVNLTLPGYQEKLVRDVANAAKKTVVLVIMSAGPIDIS 528

Query: 234 FCKD 237
           F K+
Sbjct: 529 FAKN 532

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|15230897|ref|NP_188596.1| putative beta-D-xylosidase 5 [Arabidopsis thaliana] gi|259585724|sp|Q9LJN4.2|BXL5_ARATH RecName: Full=Probable beta-D-xylosidase 5; Short=AtBXL5; Flags: Precursor gi|332642747|gb|AEE76268.1| putative beta-D-xylosidase 5 [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|9294427|dbj|BAB02547.1| beta-1,4-xylosidase [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|296083056|emb|CBI22460.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|147844622|emb|CAN82161.1| hypothetical protein VITISV_035506 [Vitis vinifera] Back     alignment and taxonomy information
>gi|225428983|ref|XP_002264114.1| PREDICTED: probable beta-D-xylosidase 5-like [Vitis vinifera] Back     alignment and taxonomy information
>gi|255573163|ref|XP_002527511.1| Beta-glucosidase, putative [Ricinus communis] gi|223533151|gb|EEF34909.1| Beta-glucosidase, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|350534908|ref|NP_001233910.1| beta-D-xylosidase 1 precursor [Solanum lycopersicum] gi|37359706|dbj|BAC98298.1| LEXYL1 [Solanum lycopersicum] Back     alignment and taxonomy information
>gi|357444469|ref|XP_003592512.1| Xylosidase [Medicago truncatula] gi|355481560|gb|AES62763.1| Xylosidase [Medicago truncatula] Back     alignment and taxonomy information
>gi|356574315|ref|XP_003555294.1| PREDICTED: LOW QUALITY PROTEIN: probable beta-D-xylosidase 5-like [Glycine max] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query238
TAIR|locus:2091236 781 AT3G19620 [Arabidopsis thalian 0.289 0.088 0.710 2.7e-65
TAIR|locus:2174809 784 XYL4 "beta-D-xylosidase 4" [Ar 0.235 0.071 0.660 2.1e-52
TAIR|locus:2144756 773 BXL3 "AT5G09730" [Arabidopsis 0.235 0.072 0.678 1.1e-50
TAIR|locus:2157994 774 BXL1 "beta-xylosidase 1" [Arab 0.239 0.073 0.649 3.1e-44
TAIR|locus:2029391 767 AT1G78060 [Arabidopsis thalian 0.226 0.070 0.518 3.9e-38
TAIR|locus:2196060 768 BXL2 "beta-xylosidase 2" [Arab 0.399 0.123 0.457 2.1e-33
UNIPROTKB|P83344 461 P83344 "Putative beta-D-xylosi 0.348 0.180 0.483 7e-31
TAIR|locus:2142434 792 AT5G10560 [Arabidopsis thalian 0.382 0.114 0.346 4.2e-21
ASPGD|ASPL0000029139 763 bxlB [Emericella nidulans (tax 0.231 0.072 0.454 2.8e-14
UNIPROTKB|Q5ATH9 763 bxlB "Exo-1,4-beta-xylosidase 0.231 0.072 0.454 2.8e-14
TAIR|locus:2091236 AT3G19620 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 245 (91.3 bits), Expect = 2.7e-65, Sum P(3) = 2.7e-65
 Identities = 49/69 (71%), Positives = 54/69 (78%)

Query:    92 MRLGFFDGDPKSQPLGNLGPSDVHTDDHKSLALDAAKQGIDSLDNKGALPLSSNNTKNLA 151
             MRLGFFDGDPKS P GNLGPSDV + DH+ LAL+AAKQGI  L+N+G LPL     K LA
Sbjct:   358 MRLGFFDGDPKSLPFGNLGPSDVCSKDHQMLALEAAKQGIVLLENRGDLPLPKTTVKKLA 417

Query:   152 VIGSNANAT 160
             VIG NANAT
Sbjct:   418 VIGPNANAT 426
GO:0004553 "hydrolase activity, hydrolyzing O-glycosyl compounds" evidence=IEA;ISS
GO:0005576 "extracellular region" evidence=ISM
GO:0005975 "carbohydrate metabolic process" evidence=IEA
GO:0005618 "cell wall" evidence=IDA
TAIR|locus:2174809 XYL4 "beta-D-xylosidase 4" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2144756 BXL3 "AT5G09730" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2157994 BXL1 "beta-xylosidase 1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2029391 AT1G78060 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2196060 BXL2 "beta-xylosidase 2" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
UNIPROTKB|P83344 P83344 "Putative beta-D-xylosidase" [Prunus persica (taxid:3760)] Back     alignment and assigned GO terms
TAIR|locus:2142434 AT5G10560 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
ASPGD|ASPL0000029139 bxlB [Emericella nidulans (taxid:162425)] Back     alignment and assigned GO terms
UNIPROTKB|Q5ATH9 bxlB "Exo-1,4-beta-xylosidase bxlB" [Aspergillus nidulans FGSC A4 (taxid:227321)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
fgenesh1_pm.C_scaffold_3001732
annotation not avaliable (865 aa)
(Arabidopsis lyrata)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query238
PLN03080 779 PLN03080, PLN03080, Probable beta-xylosidase; Prov 6e-32
PLN03080 779 PLN03080, PLN03080, Probable beta-xylosidase; Prov 9e-18
pfam00933296 pfam00933, Glyco_hydro_3, Glycosyl hydrolase famil 1e-13
pfam01915221 pfam01915, Glyco_hydro_3_C, Glycosyl hydrolase fam 2e-10
PRK15098 765 PRK15098, PRK15098, beta-D-glucoside glucohydrolas 8e-04
COG1472397 COG1472, BglX, Beta-glucosidase-related glycosidas 0.002
>gnl|CDD|178629 PLN03080, PLN03080, Probable beta-xylosidase; Provisional Back     alignment and domain information 
 Score =  122 bits (308), Expect = 6e-32
 Identities = 67/185 (36%), Positives = 91/185 (49%), Gaps = 40/185 (21%)

Query: 92  MRLGFFDGDPKSQPLGNLGPSDVHTDDHKSLALDAAKQGIDSLDN-KGALPLSSNNTKNL 150
           +RLG FDGDP++   G LGP++V T +H+ LAL+AA+QGI  L N K  LPL+ +   +L
Sbjct: 364 LRLGLFDGDPRNGWYGKLGPNNVCTKEHRELALEAARQGIVLLKNDKKFLPLNKSEVSSL 423

Query: 151 AVIGSNAN------------ATNRRLLIE---------------------------QAAK 171
           A+IG  AN                  L +                           +A  
Sbjct: 424 AIIGPMANDPYNLGGDYTGVPCQPTTLFKGLQAYVKKTSFAAGCKDVSCNSDTGFGEAIA 483

Query: 172 AAGTADVVVMVVGLDQSIEAEGLDKENLTLHGYQEKLVMEVANATKGTMILVVMAAGNVD 231
            A  AD VV+V GLD S E E  D+ +L L G Q  L+  VA+ +K  ++LV+   G VD
Sbjct: 484 IAKRADFVVVVAGLDLSQETEDHDRVSLLLPGKQMDLISSVASVSKKPVVLVLTGGGPVD 543

Query: 232 VSFCK 236
           VSF K
Sbjct: 544 VSFAK 548

Length = 779
>gnl|CDD|178629 PLN03080, PLN03080, Probable beta-xylosidase; Provisional Back     alignment and domain information
>gnl|CDD|216204 pfam00933, Glyco_hydro_3, Glycosyl hydrolase family 3 N terminal domain Back     alignment and domain information
>gnl|CDD|216783 pfam01915, Glyco_hydro_3_C, Glycosyl hydrolase family 3 C-terminal domain Back     alignment and domain information
>gnl|CDD|185053 PRK15098, PRK15098, beta-D-glucoside glucohydrolase; Provisional Back     alignment and domain information
>gnl|CDD|224389 COG1472, BglX, Beta-glucosidase-related glycosidases [Carbohydrate transport and metabolism] Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 238
PLN03080 779 Probable beta-xylosidase; Provisional 100.0
PRK15098 765 beta-D-glucoside glucohydrolase; Provisional 100.0
COG1472397 BglX Beta-glucosidase-related glycosidases [Carboh 99.95
PF00933299 Glyco_hydro_3: Glycosyl hydrolase family 3 N termi 99.78
PRK05337337 beta-hexosaminidase; Provisional 99.78
PF01915227 Glyco_hydro_3_C: Glycosyl hydrolase family 3 C-ter 99.7
COG0486 454 ThdF Predicted GTPase [General function prediction 93.33
TIGR00237 432 xseA exodeoxyribonuclease VII, large subunit. This 92.7
PRK00286 438 xseA exodeoxyribonuclease VII large subunit; Revie 92.43
COG1160 444 Predicted GTPases [General function prediction onl 90.74
PF02601 319 Exonuc_VII_L: Exonuclease VII, large subunit; Inte 87.1
PF02421156 FeoB_N: Ferrous iron transport protein B; InterPro 85.26
TIGR01756 313 LDH_protist lactate dehydrogenase. This model repr 80.69
TIGR01759 323 MalateDH-SF1 malate dehydrogenase. This model repr 80.4
>PLN03080 Probable beta-xylosidase; Provisional Back     alignment and domain information 
Probab=100.00  E-value=3.4e-52  Score=407.97  Aligned_cols=229  Identities=42%  Similarity=0.671  Sum_probs=198.3

Q ss_pred             cchhccccc-----------c---hhhhccccccc-------------ccccChHHHHhhccHHHHHHHHhcCcceeEee
Q 039625            8 TSNIGLRSL-----------V---VASIILLMMLT-------------IRKVTKQDLEDMYQPPFKSCVKESHVSSVICS   60 (238)
Q Consensus         8 ~~~~G~q~~-----------g---v~~~~khf~~~-------------ds~i~~~~L~e~~l~PF~~ai~~g~~~~VM~s   60 (238)
                      --|+|+|+.           |   |++|.|||+..             |+++++++|+|+||+||++||++|.+++||||
T Consensus       186 a~V~GlQ~~~~~~~~~~~~~~~~~V~a~~KHF~g~~~e~~~~~~r~~~~~~v~~~~L~e~yl~PF~~ai~~g~~~~VM~s  265 (779)
T PLN03080        186 EFVKGFQGGKWKKVRDDGEDGKLMLSACCKHYTAYDLEKWGNFSRYTFNAVVTEQDMEDTYQPPFKSCIQEGKASCLMCS  265 (779)
T ss_pred             HHHHHhcCCCcccccccccCCCceEEEECCeeeCCCccccCCccccCccCccCHHHHHhhhhHHHHHHHHhcCCeEEEeC
Confidence            348899974           4   99999999733             45689999999999999999999987799999


Q ss_pred             cccCCCcccccCHHHHHHHHHHhhhhh-----------------------------------------------------
Q 039625           61 YNRVIGIPTCADPDLLKGVIKSQWGLD-----------------------------------------------------   87 (238)
Q Consensus        61 y~~vng~pa~~s~~ll~~lLR~elgF~-----------------------------------------------------   87 (238)
                      ||++||+|+|.|+++|+. ||+||||+                                                     
T Consensus       266 Yn~vnG~Pa~~s~~lL~~-LR~ewGF~G~VvSD~~a~~~~~~~~~~~~~~~ea~~~Al~AG~Dl~~~~~~~~~l~~av~~  344 (779)
T PLN03080        266 YNQVNGVPACARKDLLQK-ARDEWGFQGYITSDCDAVATIFEYQTYTKSPEDAVADVLKAGMDINCGSYMLRHTQSAIEK  344 (779)
T ss_pred             CcCcCCccccCCHHHHHH-HHHHhCcCCeEecchHHHHHhhhcccccCCHHHHHHHHHHcCCCcccCchhHHHHHHHHHc
Confidence            999999999999999986 99999999                                                     


Q ss_pred             ---------------HHHHHHhcCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhCceeccCC-CCCCCCCCCCCcEE
Q 039625           88 ---------------WLKNMRLGFFDGDPKSQPLGNLGPSDVHTDDHKSLALDAAKQGIDSLDNK-GALPLSSNNTKNLA  151 (238)
Q Consensus        88 ---------------L~~k~~~G~~~~~~~~~p~~~~~~~~~~~~~~~~la~~~a~~sivLLkN~-~~LPL~~~~~~~i~  151 (238)
                                     |++|+++|+|+..+...+|.++....+++++|+++|+++|++|||||||+ ++|||++.+.++|+
T Consensus       345 G~i~e~~ID~av~RiL~~k~rlGlfd~~~~~~~~~~~~~~~v~~~~h~~lA~eaA~~siVLLKN~~~~LPL~~~~~~~Ia  424 (779)
T PLN03080        345 GKVQEEDIDRALFNLFSVQLRLGLFDGDPRNGWYGKLGPNNVCTKEHRELALEAARQGIVLLKNDKKFLPLNKSEVSSLA  424 (779)
T ss_pred             CCCCHHHHHHHHHHHHHHHHHhCCCcCCCcccccccccccccCCHHHHHHHHHHHHhCEEEEecCCCCCCCCCCCCCEEE
Confidence                           67899999998533333454444567889999999999999999999999 89999976557999


Q ss_pred             EEccCCCchhh---------------------------------------hHHHHHHHHHhCCCCEEEEEeeCCCCcccc
Q 039625          152 VIGSNANATNR---------------------------------------RLLIEQAAKAAGTADVVVMVVGLDQSIEAE  192 (238)
Q Consensus       152 viG~~a~~~~~---------------------------------------~~~~~~a~~~a~~aD~vIv~~g~~~~~~~e  192 (238)
                      ||||+|+....                                       ...+++|+++|++||+|||++|.+...++|
T Consensus       425 ViGp~A~~~~~~~g~~~~~~~~~~t~~~gl~~~~~~~~y~~g~~~~~~~~~~~~~~A~~~A~~aD~vIv~~G~~~~~e~E  504 (779)
T PLN03080        425 IIGPMANDPYNLGGDYTGVPCQPTTLFKGLQAYVKKTSFAAGCKDVSCNSDTGFGEAIAIAKRADFVVVVAGLDLSQETE  504 (779)
T ss_pred             EECCCCCCcCcCCCCCCCCCCCCCCHHHHHHHHhhcceeccCccccccCchhhHHHHHHHhccCCEEEEEeCCCcccccc
Confidence            99998854311                                       123567889999999999999999889999


Q ss_pred             CCCCCCCCCCHHHHHHHHHHHhhCCCceEEEEecCceeecCCCcC
Q 039625          193 GLDKENLTLHGYQEKLVMEVANATKGTMILVVMAAGNVDVSFCKD  237 (238)
Q Consensus       193 g~Dr~~l~l~~~q~~li~~l~~~~~~~vVvV~~~g~P~~l~~~~~  237 (238)
                      |.||.+|.||+.|.+||++|++++++|||||+++|+|++|+|+++
T Consensus       505 ~~Dr~~l~Lp~~Q~~LI~~va~~~~~pvIvVl~~g~Pv~l~~~~~  549 (779)
T PLN03080        505 DHDRVSLLLPGKQMDLISSVASVSKKPVVLVLTGGGPVDVSFAKQ  549 (779)
T ss_pred             CCCcccccCCccHHHHHHHHHhhcCCCEEEEEeCCceeeccchhc
Confidence            999999999999999999999877778999999999999999863

>PRK15098 beta-D-glucoside glucohydrolase; Provisional Back     alignment and domain information
>COG1472 BglX Beta-glucosidase-related glycosidases [Carbohydrate transport and metabolism] Back     alignment and domain information
>PF00933 Glyco_hydro_3: Glycosyl hydrolase family 3 N terminal domain; InterPro: IPR001764 O-Glycosyl hydrolases 3 Back     alignment and domain information
>PRK05337 beta-hexosaminidase; Provisional Back     alignment and domain information
>PF01915 Glyco_hydro_3_C: Glycosyl hydrolase family 3 C-terminal domain; InterPro: IPR002772 Glycoside hydrolase family 3 GH3 from CAZY comprises enzymes with a number of known activities; beta-glucosidase (3 Back     alignment and domain information
>COG0486 ThdF Predicted GTPase [General function prediction only] Back     alignment and domain information
>TIGR00237 xseA exodeoxyribonuclease VII, large subunit Back     alignment and domain information
>PRK00286 xseA exodeoxyribonuclease VII large subunit; Reviewed Back     alignment and domain information
>COG1160 Predicted GTPases [General function prediction only] Back     alignment and domain information
>PF02601 Exonuc_VII_L: Exonuclease VII, large subunit; InterPro: IPR020579 Exonuclease VII 3 Back     alignment and domain information
>PF02421 FeoB_N: Ferrous iron transport protein B; InterPro: IPR011619 Escherichia coli has an iron(II) transport system (feo) which may make an important contribution to the iron supply of the cell under anaerobic conditions Back     alignment and domain information
>TIGR01756 LDH_protist lactate dehydrogenase Back     alignment and domain information
>TIGR01759 MalateDH-SF1 malate dehydrogenase Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query238
4i3g_A 829 Crystal Structure Of Desr, A Beta-glucosidase From 3e-05
>pdb|4I3G|A Chain A, Crystal Structure Of Desr, A Beta-glucosidase From Streptomyces Venezueale In Complex With D-glucose. Length = 829 Back     alignment and structure 
Iteration: 1

 Score = 45.1 bits (105), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 22/64 (34%), Positives = 38/64 (59%), Gaps = 7/64 (10%)
Query: 32  VTKQDLEDMYQPPFKSCVKESHVSSVICSYNRVIGIPTCADPDLLKGVIKSQWGL----- 86
           V +Q L ++  P F++  K +  +S +C+YN + G P+C + +LL  V+++QWG      
Sbjct: 214 VDEQTLREIEFPAFEASSK-AGAASFMCAYNGLNGKPSCGNDELLNNVLRTQWGFQGWVM 272
Query: 87  -DWL 89
            DWL
Sbjct: 273 SDWL 276

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query238
3rrx_A 822 EXO-1,3/1,4-beta-glucanase; (alpha/beta)8 barrel,( 7e-20
2x41_A 721 Beta-glucosidase; hydrolase, TIM barrel fold, fibr 8e-19
2x41_A 721 Beta-glucosidase; hydrolase, TIM barrel fold, fibr 2e-09
3abz_A 845 Beta-glucosidase I; glycoside hydrolase family3 be 1e-17
3abz_A 845 Beta-glucosidase I; glycoside hydrolase family3 be 7e-10
1x38_A602 Beta-D-glucan exohydrolase isoenzyme EXOI; 2-domai 1e-13
1x38_A 602 Beta-D-glucan exohydrolase isoenzyme EXOI; 2-domai 3e-08
>3rrx_A EXO-1,3/1,4-beta-glucanase; (alpha/beta)8 barrel,(alpha/beta)6 sheet, hydrolase; 1.90A {Pseudoalteromonas SP} PDB: 3usz_A 3f93_A 3f94_A 3ut0_A Length = 822 Back     alignment and structure
 Score = 87.1 bits (216), Expect = 7e-20
 Identities = 46/303 (15%), Positives = 91/303 (30%), Gaps = 113/303 (37%)

Query: 32  VTKQDLEDMYQPPFKSCVKESHVSSVICSYNRVIGIPTCADPDLL----------KGVIK 81
           + ++ L D++   + S + +  V SV+ S+N   G     D  LL           G + 
Sbjct: 234 IDEKGLRDIHSAGYFSAINQ-GVQSVMASFNSWNGKRVHGDKHLLTDVLKNQLGFDGFVV 292

Query: 82  SQW--------------------GLD---------------------------------- 87
           S W                    G+D                                  
Sbjct: 293 SDWNAHKFVEGCDLEQCAQAINAGVDVIMVPEHFEAFYHNTVKQVKAGVIAESRINDAVR 352

Query: 88  ---WLKNMRLGFFDGDPKSQPLGNLGPSDVHTDDHKSLALDAAKQGIDSLDN-KGALPLS 143
                K +R G F     S    +  P  +   +H++LA +A ++ +  L N +  LP+ 
Sbjct: 353 RFLRAK-IRWGVFTKSKPSARPESQHPQWLGAAEHRTLAREAVRKSLVLLKNNESILPIK 411

Query: 144 SNNTKNLAVIGSNANATNRRL--------------------------------------L 165
           ++    + V G  ANA N +                                        
Sbjct: 412 AS--SRILVAGKGANAINMQAGGWSVSWQGTDNTNSDFPNATSIFSGLQSQVTKAGGKIT 469

Query: 166 IEQAAKAAGTADVVVMVVGLDQSIE--AEGLDKENLTLHGYQEKLVMEVANATKGTMILV 223
           + ++ +     DV ++V+G +   E   +    E      +   L+ ++  A    ++ V
Sbjct: 470 LSESGEYTSKPDVAIVVIGEEPYAEWFGDIELLEFQHETKHALALLKQLK-ADNIPVVTV 528

Query: 224 VMA 226
            ++
Sbjct: 529 FLS 531
>2x41_A Beta-glucosidase; hydrolase, TIM barrel fold, fibronectin type III fold; HET: BGC; 2.05A {Thermotoga neapolitana} PDB: 2x40_A* 2x42_A* Length = 721 Back     alignment and structure
>2x41_A Beta-glucosidase; hydrolase, TIM barrel fold, fibronectin type III fold; HET: BGC; 2.05A {Thermotoga neapolitana} PDB: 2x40_A* 2x42_A* Length = 721 Back     alignment and structure
>3abz_A Beta-glucosidase I; glycoside hydrolase family3 beta-glucosidase, PA14 domain, H; 2.15A {Kluyveromyces marxianus} PDB: 3ac0_A* Length = 845 Back     alignment and structure
>3abz_A Beta-glucosidase I; glycoside hydrolase family3 beta-glucosidase, PA14 domain, H; 2.15A {Kluyveromyces marxianus} PDB: 3ac0_A* Length = 845 Back     alignment and structure
>1x38_A Beta-D-glucan exohydrolase isoenzyme EXOI; 2-domain fold, ligand-protein complex; HET: NAG BMA FUC MAN IDD GOL; 1.70A {Hordeum vulgare} SCOP: c.1.8.7 c.23.11.1 PDB: 1lq2_A* 1x39_A* 1ex1_A* 1ieq_A* 1iev_A* 1iew_A* 1iex_A* 1j8v_A* Length = 602 Back     alignment and structure
>1x38_A Beta-D-glucan exohydrolase isoenzyme EXOI; 2-domain fold, ligand-protein complex; HET: NAG BMA FUC MAN IDD GOL; 1.70A {Hordeum vulgare} SCOP: c.1.8.7 c.23.11.1 PDB: 1lq2_A* 1x39_A* 1ex1_A* 1ieq_A* 1iev_A* 1iew_A* 1iex_A* 1j8v_A* Length = 602 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query238
3abz_A 845 Beta-glucosidase I; glycoside hydrolase family3 be 100.0
3zyz_A 713 Beta-D-glucoside glucohydrolase; HET: NAG BGC; 2.1 100.0
3rrx_A 822 EXO-1,3/1,4-beta-glucanase; (alpha/beta)8 barrel,( 100.0
2x41_A 721 Beta-glucosidase; hydrolase, TIM barrel fold, fibr 100.0
1x38_A602 Beta-D-glucan exohydrolase isoenzyme EXOI; 2-domai 100.0
3bmx_A642 Uncharacterized lipoprotein YBBD; beta-N-hexosamin 100.0
3sql_A535 Glycosyl hydrolase family 3; structural genomics, 99.97
3tev_A351 Glycosyl hyrolase, family 3; PSI-biology, midwest 99.84
4gvf_A349 Beta-hexosaminidase; TIM-barrel, hydrolase; HET: N 99.81
2oxn_A340 Beta-hexosaminidase; TIM-barrel, hydrolase; HET: O 99.79
4g6c_A348 Beta-hexosaminidase 1; ssgcid, niaid, structural g 99.77
>3abz_A Beta-glucosidase I; glycoside hydrolase family3 beta-glucosidase, PA14 domain, H; 2.15A {Kluyveromyces marxianus} PDB: 3ac0_A* Back     alignment and structure
Probab=100.00  E-value=8.6e-51  Score=400.07  Aligned_cols=221  Identities=25%  Similarity=0.365  Sum_probs=192.9

Q ss_pred             cchhcccccchhhhcccccc---------cccccChHHHHhhccHHHHHHHH-hcCcceeEeecccCCCcccccCHHHHH
Q 039625            8 TSNIGLRSLVVASIILLMML---------TIRKVTKQDLEDMYQPPFKSCVK-ESHVSSVICSYNRVIGIPTCADPDLLK   77 (238)
Q Consensus         8 ~~~~G~q~~gv~~~~khf~~---------~ds~i~~~~L~e~~l~PF~~ai~-~g~~~~VM~sy~~vng~pa~~s~~ll~   77 (238)
                      .-|+|+|+.||++|.|||+.         .|+++|+++|+|+||+||++||+ +| +++||||||++||+|||+|+++|+
T Consensus       131 a~v~GlQ~~gV~a~~KHFpg~g~e~~r~~~~~~v~~~~L~e~~L~PF~~ai~~ag-~~~VM~syn~ing~pa~~s~~ll~  209 (845)
T 3abz_A          131 SVVKGMQGEGIAATVKHFVCNDLEDQRFSSNSIVSERALREIYLEPFRLAVKHAN-PVCIMTAYNKVNGEHCSQSKKLLI  209 (845)
T ss_dssp             HHHHHHHHTTCBCEEEEETTCCCCTTTTTCEEECCHHHHHHTTSHHHHHHHHHHC-CSEEEECSSEETTEEGGGCHHHHT
T ss_pred             HHHHHHhhCCeeEEeeccccCCcccCCccccCCCCHHHHHHhhHHHHHHHHHhcC-CCEEEecCCCcCCEeccCCHHHHH
Confidence            35899999999999999973         57789999999999999999996 56 569999999999999999999999


Q ss_pred             HHHHHhhhhh-----------------------------------------------------------HHHHHHhc---
Q 039625           78 GVIKSQWGLD-----------------------------------------------------------WLKNMRLG---   95 (238)
Q Consensus        78 ~lLR~elgF~-----------------------------------------------------------L~~k~~~G---   95 (238)
                      ++||+||||+                                                           |++|+++|   
T Consensus       210 ~lLR~e~GF~G~VvSD~~~~~~~~~Al~AG~D~~m~~~~~~~~~~~l~~av~~G~~i~~~~id~av~RIL~~k~~~g~l~  289 (845)
T 3abz_A          210 DILRDEWKWDGMLMSDWFGTYTTAAAIKNGLDIEFPGPTRWRTRALVSHSLNSREQITTEDVDDRVRQVLKMIKFVVDNL  289 (845)
T ss_dssp             CCCCCCTCCCSEEECCTTCCCCSHHHHHHTCCBBCSSSCSSCCHHHHHHHHHTTCSCCHHHHHHHHHHHHHHHHHHHHTH
T ss_pred             HHHhhccCCCeEEEcccccHHHHHHHHHcCCCcccCCchhhhHHHHHHHHHHcCccchHHHHHHHHHHHHHHHHHhCCcc
Confidence            9999999999                                                           56789999   


Q ss_pred             -CCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhCceeccCC-CCCCCCCCCCCcEEEEccCCCchhh-----------
Q 039625           96 -FFDGDPKSQPLGNLGPSDVHTDDHKSLALDAAKQGIDSLDNK-GALPLSSNNTKNLAVIGSNANATNR-----------  162 (238)
Q Consensus        96 -~~~~~~~~~p~~~~~~~~~~~~~~~~la~~~a~~sivLLkN~-~~LPL~~~~~~~i~viG~~a~~~~~-----------  162 (238)
                       +|+ +    |+.......+++++|+++++++|++|||||||+ ++|||++.  +||+||||+|+....           
T Consensus       290 ~~~~-~----p~~~~~~~~~~~~~~~~la~~~a~~sivLLKN~~~~LPL~~~--~~iaviGp~A~~~~~~Gggs~~~~~~  362 (845)
T 3abz_A          290 EKTG-I----VENGPESTSNNTKETSDLLRKIAADSIVLLKNKNNILPLKKE--DNIIVIGPNAKAKTSSGGGSASMNSY  362 (845)
T ss_dssp             HHHC-C----CTTCCCCCTTCSHHHHHHHHHHHHHHCEEEEECTTCCSCCTT--SCEEEESTTTSCCCCSCBSTTCCCBS
T ss_pred             cccc-C----CccCccccccCCHHHHHHHHHHHHhCcEEeccCCcccCCCCC--CEEEEEcCCcchhhccCCCccCcccC
Confidence             888 3    332222234789999999999999999999999 89999864  799999998743100           


Q ss_pred             --------------------------------------------------------------------------------
Q 039625          163 --------------------------------------------------------------------------------  162 (238)
Q Consensus       163 --------------------------------------------------------------------------------  162 (238)
                                                                                                      
T Consensus       363 ~~vtpl~gi~~~~~~~v~y~~G~~~~~~~~~~~~~~~~~~~~~~~g~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  442 (845)
T 3abz_A          363 YVVSPYEGIVNKLGKEVDYTVGAYSHKSIGGLAESSLIDAAKPADAENSGLIAKFYSNPVEERSDDEEPFHVTKVNRSNV  442 (845)
T ss_dssp             CCCCHHHHHHHHHTSCCEEECCCCCCSSCCBSGGGEESSTTSCSCTTTBSEEEEEESSCTTTSCTTCCCSEEEEECSSEE
T ss_pred             CcCCHHHHHHHhhcCceeeccccccccccccccccccccccccccCCCCceEEEEeccCcccCcccccceeeeeccccce
Confidence                                                                                            


Q ss_pred             --------------------------------------------------------------------------------
Q 039625          163 --------------------------------------------------------------------------------  162 (238)
Q Consensus       163 --------------------------------------------------------------------------------  162 (238)
                                                                                                      
T Consensus       443 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~l~idg~~v~~~~~~~~~~~~~~~~~~~~~~~~~~l~  522 (845)
T 3abz_A          443 HLFDFKHEKVDPKNPYFFVTLTGQYVPQEDGDYIFSLQVYGSGLFYLNDELIIDQKHNQERGSFCFGAGTKERTKKLTLK  522 (845)
T ss_dssp             ECTTCCCTTSBTTBCCCEEEEEEEECCSSSEEEEEEEEEESEEEEEETTEEEEEESSSCCBCSTTTTTSBCCEEEEEEEC
T ss_pred             eecccccccccccccceeEEEEEEEecCCCccEEEEEeecCceEEEECCEEEeeccccccccccccccCcccceeEEEec
Confidence                                                                                            


Q ss_pred             --------------------------------------hHHHHHHHHHhCCCCEEEEEeeCCCCccccCCCCCCCCCCHH
Q 039625          163 --------------------------------------RLLIEQAAKAAGTADVVVMVVGLDQSIEAEGLDKENLTLHGY  204 (238)
Q Consensus       163 --------------------------------------~~~~~~a~~~a~~aD~vIv~~g~~~~~~~eg~Dr~~l~l~~~  204 (238)
                                                            ...+++|+++|++||+||||+|.++.+|+||.||.+|.||+.
T Consensus       523 ~g~~y~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Av~~A~~ADvvVv~vG~~~~~e~Eg~DR~~l~LP~~  602 (845)
T 3abz_A          523 KGQVYNVRVEYGSGPTSGLVGEFGAGGFQAGVIKAIDDDEEIRNAAELAAKHDKAVLIIGLNGEWETEGYDRENMDLPKR  602 (845)
T ss_dssp             TTCCEEEEEEEECTTTSCCSSCCCCCEEEEEEEECCCHHHHHHHHHHHHHTSSEEEEEEECCTTTSBTTBCCSSSCCCTT
T ss_pred             CCceeeEEEEeccCCcccccccccccceeecccccccchhhHHHHHHHHhcCCEEEEEEecCCccccccCCcccccCCHH
Confidence                                                  023567889999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhhCCCceEEEEecCceeecCCCcC
Q 039625          205 QEKLVMEVANATKGTMILVVMAAGNVDVSFCKD  237 (238)
Q Consensus       205 q~~li~~l~~~~~~~vVvV~~~g~P~~l~~~~~  237 (238)
                      |++||++|+++ ++|||||+++|+|++|+|+++
T Consensus       603 Q~~LI~aV~a~-~~~tVVVl~sG~pv~m~w~~~  634 (845)
T 3abz_A          603 TNELVRAVLKA-NPNTVIVNQSGTPVEFPWLED  634 (845)
T ss_dssp             HHHHHHHHHHH-CSCEEEEEECSSCCCCTTGGG
T ss_pred             HHHHHHHHHHh-CCCEEEEEeCCCcccCcchhc
Confidence            99999999985 568999999999999999863
>3zyz_A Beta-D-glucoside glucohydrolase; HET: NAG BGC; 2.10A {Hypocrea jecorina} PDB: 3zz1_A* 4i8d_A* Back     alignment and structure
>3rrx_A EXO-1,3/1,4-beta-glucanase; (alpha/beta)8 barrel,(alpha/beta)6 sheet, hydrolase; 1.90A {Pseudoalteromonas SP} PDB: 3usz_A 3f93_A 3f94_A 3ut0_A Back     alignment and structure
>2x41_A Beta-glucosidase; hydrolase, TIM barrel fold, fibronectin type III fold; HET: BGC; 2.05A {Thermotoga neapolitana} PDB: 2x40_A* 2x42_A* Back     alignment and structure
>1x38_A Beta-D-glucan exohydrolase isoenzyme EXOI; 2-domain fold, ligand-protein complex; HET: NAG BMA FUC MAN IDD GOL; 1.70A {Hordeum vulgare} SCOP: c.1.8.7 c.23.11.1 PDB: 1lq2_A* 1x39_A* 1ex1_A* 1ieq_A* 1iev_A* 1iew_A* 1iex_A* 1j8v_A* Back     alignment and structure
>3bmx_A Uncharacterized lipoprotein YBBD; beta-N-hexosaminidase, TIM barrel, glycos hydrolase, membrane, palmitate; HET: P4G; 1.40A {Bacillus subtilis} PDB: 3cqm_A* 3nvd_A* 3lk6_A* Back     alignment and structure
>3sql_A Glycosyl hydrolase family 3; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, TIM-barrel, alpha-beta-alpha sandwich; HET: MSE; 2.25A {Synechococcus SP} PDB: 3sqm_A* Back     alignment and structure
>3tev_A Glycosyl hyrolase, family 3; PSI-biology, midwest center for structural genomics, structu genomic, MCSG, hydrolase; 2.30A {Deinococcus radiodurans} Back     alignment and structure
>4gvf_A Beta-hexosaminidase; TIM-barrel, hydrolase; HET: NDG NAG MES; 1.35A {Salmonella enterica subsp} PDB: 4gvg_A* 4gvh_A* 4gvi_A* Back     alignment and structure
>2oxn_A Beta-hexosaminidase; TIM-barrel, hydrolase; HET: OAN; 1.70A {Vibrio cholerae} PDB: 3gs6_A* 3gsm_A* 1y65_A* 1tr9_A Back     alignment and structure
>4g6c_A Beta-hexosaminidase 1; ssgcid, niaid, structural genomics, Na institute of allergy and infectious diseases; 1.38A {Burkholderia cenocepacia} PDB: 4gnv_A* Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query238
d1x38a1388 Beta-D-glucan exohydrolase, N-terminal domain {Bar 99.91
d1tr9a_330 Beta-hexosaminidase NagZ {Vibrio cholerae [TaxId: 99.64
d1x38a2214 Beta-D-glucan exohydrolase, C-terminal domain {Bar 99.61
d5mdha1154 Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 982 87.5
d2cmda1145 Malate dehydrogenase {Escherichia coli [TaxId: 562 86.67
d1hyha1146 L-2-hydroxyisocapronate dehydrogenase, L-HICDH {La 85.75
d1y7ta1154 Malate dehydrogenase {Thermus thermophilus [TaxId: 85.02
d1mkya1171 Probable GTPase Der, N-terminal and middle domains 84.84
d1wb1a4179 Elongation factor SelB, N-terminal domain {Methano 84.55
d2ldxa1159 Lactate dehydrogenase {Mouse (Mus musculus) [TaxId 82.63
d1mlda1144 Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 982 81.03
d1i0za1160 Lactate dehydrogenase {Human (Homo sapiens), heart 80.8
>d1x38a1 c.1.8.7 (A:1-388) Beta-D-glucan exohydrolase, N-terminal domain {Barley (Hordeum vulgare) [TaxId: 4513]} Back     information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: (Trans)glycosidases
family: NagZ-like
domain: Beta-D-glucan exohydrolase, N-terminal domain
species: Barley (Hordeum vulgare) [TaxId: 4513]

Probab=99.91  E-value=3.9e-26  Score=205.82  Aligned_cols=116  Identities=20%  Similarity=0.379  Sum_probs=99.9

Q ss_pred             chhccc----ccchhhhccccccc----------ccccChHHHHhhccHHHHHHHHhcCcceeEeecccCCCcccccCHH
Q 039625            9 SNIGLR----SLVVASIILLMMLT----------IRKVTKQDLEDMYQPPFKSCVKESHVSSVICSYNRVIGIPTCADPD   74 (238)
Q Consensus         9 ~~~G~q----~~gv~~~~khf~~~----------ds~i~~~~L~e~~l~PF~~ai~~g~~~~VM~sy~~vng~pa~~s~~   74 (238)
                      -++|+|    +.||++|.||||..          ++.+++++|+|+||+||+.+|++|+. +||||||.+||+|+|.|++
T Consensus       188 ~~~G~~~~~~~~gV~a~~KHFpG~g~~~~~~~~~~~~i~~~~l~~~~l~pf~~~i~~g~~-~vM~s~~~~~g~pa~~s~~  266 (388)
T d1x38a1         188 FTSGMPFVAGKNKVAACAKHFVGDGGTVDGINENNTIINREGLMNIHMPAYKNAMDKGVS-TVMISYSSWNGVKMHANQD  266 (388)
T ss_dssp             CCTTCCCCCSTTSCBCEEEEETTGGGCGGGCTTCEECCCHHHHHHHTSHHHHHHHHTTCC-EEEECSSEETTEEGGGCHH
T ss_pred             hcccccccccccCcceeeeeeecCCccccCccccccchhHHHHHHHhhhhhHHHHhhccc-cccccccccCCccccCCHH
Confidence            356776    56999999999832          23379999999999999999999975 9999999999999999999


Q ss_pred             HHHHHHHHhhhhh-------------------------------------------------------------------
Q 039625           75 LLKGVIKSQWGLD-------------------------------------------------------------------   87 (238)
Q Consensus        75 ll~~lLR~elgF~-------------------------------------------------------------------   87 (238)
                      +|+++||++|||+                                                                   
T Consensus       267 ~l~~lLR~~~gF~G~VvSD~~~m~~~~~~~~~~~~~~~~~a~~ag~d~~~~~~~~~~~~~~l~~av~~G~i~~~rid~sv  346 (388)
T d1x38a1         267 LVTGYLKDTLKFKGFVISDWEGIDRITTPAGSDYSYSVKASILAGLDMIMVPNKYQQFISILTGHVNGGVIPMSRIDDAV  346 (388)
T ss_dssp             HHCCCCCTTSCCCSEEECCTTTTGGGSSSTTTTHHHHHHHHHHHTCCBEECCSCHHHHHHHHHHHHHTTSSCHHHHHHHH
T ss_pred             HHHHHHHhccCCCceeecchhhccccccccCCcHHHHHHHHHhcCCCeecCCccHHHHHHHHHHHHHcCCCCHHHHHHHH
Confidence            9999999999999                                                                   


Q ss_pred             ---HHHHHHhcCCCCCCCCCCCCCCC-CCCCCCHHHHHHHHHHHHhC
Q 039625           88 ---WLKNMRLGFFDGDPKSQPLGNLG-PSDVHTDDHKSLALDAAKQG  130 (238)
Q Consensus        88 ---L~~k~~~G~~~~~~~~~p~~~~~-~~~~~~~~~~~la~~~a~~s  130 (238)
                         |++|+++|+|+ +    ||.+.. ...+++++|+++|+++|+||
T Consensus       347 ~Ril~~k~~lGlfd-~----p~~~~~~~~~i~~~~h~~~a~~aA~~S  388 (388)
T d1x38a1         347 TRILRVKFTMGLFE-N----PYADPAMAEQLGKQEHRDLAREAARKS  388 (388)
T ss_dssp             HHHHHHHHHTTTTT-C----CSCCGGGGGGTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhCCCC-C----CCCChhhhhhcCCHHHHHHHHHHHhcC
Confidence               67899999999 4    443322 24689999999999999997
>d1tr9a_ c.1.8.7 (A:) Beta-hexosaminidase NagZ {Vibrio cholerae [TaxId: 666]} Back     information, alignment and structure
>d1x38a2 c.23.11.1 (A:389-602) Beta-D-glucan exohydrolase, C-terminal domain {Barley (Hordeum vulgare) [TaxId: 4513]} Back     information, alignment and structure
>d5mdha1 c.2.1.5 (A:1-154) Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 9823]} Back     information, alignment and structure
>d2cmda1 c.2.1.5 (A:1-145) Malate dehydrogenase {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1hyha1 c.2.1.5 (A:21-166) L-2-hydroxyisocapronate dehydrogenase, L-HICDH {Lactobacillus confusus [TaxId: 1583]} Back     information, alignment and structure
>d1y7ta1 c.2.1.5 (A:0-153) Malate dehydrogenase {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1mkya1 c.37.1.8 (A:2-172) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d1wb1a4 c.37.1.8 (A:1-179) Elongation factor SelB, N-terminal domain {Methanococcus maripaludis [TaxId: 39152]} Back     information, alignment and structure
>d2ldxa1 c.2.1.5 (A:1-159) Lactate dehydrogenase {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1mlda1 c.2.1.5 (A:1-144) Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 9823]} Back     information, alignment and structure
>d1i0za1 c.2.1.5 (A:1-160) Lactate dehydrogenase {Human (Homo sapiens), heart isoform (H chain) [TaxId: 9606]} Back     information, alignment and structure