Citrus Sinensis ID: 039640

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-
MERLGGFLPVPYVQELAKKPMAVVPPIYMRPKGDTPTISNGTLNSKIPVINMQSLYSEESMDSELAKLDFACKQSGLFQLVNHGKEIKEFFYLSMEEKKKYWQDPGEVEGFGQASFLTIKDEEMTGFFENGMQSLRMNYYALCPVTPLPNNLNLAILIDKG
cccccccccccHHHHHHHccccccccccccccccccccccccccccccEEEcccccccccHHHHHHHHHHHHHHcccEEEEccccHHHHHHcccHHHHHHHcccccccccccccccccccccEEEEcEEEccccccccccccccccccccHHHHHHHHHcc
ccccccccccHHHHHHHHcccccccHHccccHHcccccccccccccccEEEHHHccccccHHHHHHHHHHHHHHcccEEEEcccccHHHHHcccHHHHHHHHccccccEcccHHHEEEcccccHHHHHEEEcccHHcccccccccccccHHHHHHHHEccc
merlggflpvpyvqelakkpmavvppiymrpkgdtptisngtlnskipvinmqslyseesmDSELAKLDFACKQSGLFQLVNHGKEIKEFFYLSMEEKKkywqdpgevegfgqasfltiKDEEMTGFFENGMQSLRMNYyalcpvtplpnnlnlAILIDKG
MERLGGFLPVPYVQELAKKPMAVVPPIYmrpkgdtptisngtlnskIPVINMQSLYSEESMDSELAKLDFACKQSGLFQLVNHGKEIKEFFYLSMEEKKKYWQDPGEVEGFGQASFLTIKDEEMTGFFENGMQSLRMNYYALCPVTPLPNNLNLAILIDKG
MERLGGFLPVPYVQELAKKPMAVVPPIYMRPKGDTPTISNGTLNSKIPVINMQSLYSEESMDSELAKLDFACKQSGLFQLVNHGKEIKEFFYLSMEEKKKYWQDPGEVEGFGQASFLTIKDEEMTGFFENGMQSLRMNYYALCPVTplpnnlnlAILIDKG
*****GFLPVPYVQELAKKPMAVVPPIYMR***************KIPVINM************LAKLDFACKQSGLFQLVNHGKEIKEFFYLSMEEKKKYWQDPGEVEGFGQASFLTIKDEEMTGFFENGMQSLRMNYYALCPVTPLPNNLNLAILI***
****GGFLPVPYVQELAKKPMAVVPPIYMRPKGDTP*****TLNSKIPVINMQSLYSEESMDSELAKLDFACKQSGLFQLVNHGKEIKEFFYLSMEEKKKYWQDPGEVEGFGQASFLTIKDEEMTGFFENGMQSLRMNYYALCPVTPLPNNLNLAILIDK*
MERLGGFLPVPYVQELAKKPMAVVPPIYMRPKGDTPTISNGTLNSKIPVINMQSLYSEESMDSELAKLDFACKQSGLFQLVNHGKEIKEFFYLSMEEKKKYWQDPGEVEGFGQASFLTIKDEEMTGFFENGMQSLRMNYYALCPVTPLPNNLNLAILIDKG
*******LP*P***EL**KPMAVVPPIYMRPKGDTPTISNGTLNSKIPVINMQSLYSEESMDSELAKLDFACKQSGLFQLVNHGKEIKEFFYLSMEEKKKYWQDPGEVEGFGQASFLTIKDEEMTGFFENGMQSLRMNYYALCPVTPLPNNLNLAILIDKG
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MERLGGFLPVPYVQELAKKPMAVVPPIYMRPKGDTPTISNGTLNSKIPVINMQSLYSEESMDSELAKLDFACKQSGLFQLVNHGKEIKEFFYLSMEEKKKYWQDPGEVEGFGQASFLTIKDEEMTGFFENGMQSLRMNYYALCPVTPLPNNLNLAILIDKG
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query161 2.2.26 [Sep-21-2011]
Q39224 358 Protein SRG1 OS=Arabidops yes no 0.863 0.388 0.441 3e-27
D4N502 360 Codeine O-demethylase OS= N/A no 0.900 0.402 0.402 5e-17
D4N500 364 Thebaine 6-O-demethylase N/A no 0.726 0.321 0.404 8e-17
D4N501 364 Probable 2-oxoglutarate/F N/A no 0.726 0.321 0.390 1e-15
A2A1A0 352 S-norcoclaurine synthase N/A no 0.881 0.403 0.322 6e-14
Q96323 356 Leucoanthocyanidin dioxyg no no 0.658 0.297 0.309 2e-07
O04274 362 Leucoanthocyanidin dioxyg N/A no 0.645 0.287 0.312 3e-06
O04707 365 Gibberellin 20 oxidase 1- N/A no 0.708 0.312 0.25 5e-06
O04705 361 Gibberellin 20 oxidase 1- N/A no 0.720 0.321 0.246 1e-05
O04706 365 Gibberellin 20 oxidase 1- N/A no 0.720 0.317 0.246 3e-05
>sp|Q39224|SRG1_ARATH Protein SRG1 OS=Arabidopsis thaliana GN=SRG1 PE=2 SV=1 Back     alignment and function desciption
 Score =  120 bits (301), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 68/154 (44%), Positives = 94/154 (61%), Gaps = 15/154 (9%)

Query: 10  VPYVQELAK-KPMAVVPPIYMRPKGDTPTISNG-TLNSKIPVINMQSLYSEESMDSELAK 67
           VP VQE+ K K +  VPP Y+R   D   + +   +  +IP+I+M+ L S  +MDSE+ K
Sbjct: 14  VPSVQEMVKEKTITTVPPRYVRSDQDKTEVDDDFDVKIEIPIIDMKRLCSSTTMDSEVEK 73

Query: 68  LDFACKQSGLFQLVNHG----------KEIKEFFYLSMEEKKKYWQDPGEVEGFGQASFL 117
           LDFACK+ G FQLVNHG           EI++FF L MEEKKK+WQ P E+EGFGQA F+
Sbjct: 74  LDFACKEWGFFQLVNHGIDSSFLDKVKSEIQDFFNLPMEEKKKFWQRPDEIEGFGQA-FV 132

Query: 118 TIKDEEM--TGFFENGMQSLRMNYYALCPVTPLP 149
             +D+++     F + +Q + +    L P  PLP
Sbjct: 133 VSEDQKLDWADLFFHTVQPVELRKPHLFPKLPLP 166

Arabidopsis thaliana (taxid: 3702)
>sp|D4N502|DIOX3_PAPSO Codeine O-demethylase OS=Papaver somniferum GN=CODM PE=1 SV=1 Back     alignment and function description
>sp|D4N500|DIOX1_PAPSO Thebaine 6-O-demethylase OS=Papaver somniferum GN=T6ODM PE=1 SV=1 Back     alignment and function description
>sp|D4N501|DIOX2_PAPSO Probable 2-oxoglutarate/Fe(II)-dependent dioxygenase OS=Papaver somniferum GN=DIOX2 PE=2 SV=1 Back     alignment and function description
>sp|A2A1A0|NCS1_COPJA S-norcoclaurine synthase 1 OS=Coptis japonica GN=NCS1 PE=1 SV=1 Back     alignment and function description
>sp|Q96323|LDOX_ARATH Leucoanthocyanidin dioxygenase OS=Arabidopsis thaliana GN=LDOX PE=1 SV=1 Back     alignment and function description
>sp|O04274|LDOX_PERFR Leucoanthocyanidin dioxygenase OS=Perilla frutescens GN=ANS PE=2 SV=1 Back     alignment and function description
>sp|O04707|GAO1A_WHEAT Gibberellin 20 oxidase 1-A OS=Triticum aestivum GN=GA20ox1A PE=2 SV=1 Back     alignment and function description
>sp|O04705|GAO1D_WHEAT Gibberellin 20 oxidase 1-D OS=Triticum aestivum GN=GA20ox1D PE=1 SV=1 Back     alignment and function description
>sp|O04706|GAO1B_WHEAT Gibberellin 20 oxidase 1-B OS=Triticum aestivum GN=GA20ox1B PE=2 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query161
255575133 317 Naringenin,2-oxoglutarate 3-dioxygenase, 0.962 0.488 0.431 1e-30
255575141 364 Leucoanthocyanidin dioxygenase, putative 0.906 0.401 0.453 1e-27
225463356 354 PREDICTED: protein SRG1 [Vitis vinifera] 0.708 0.322 0.535 4e-27
297740621181 unnamed protein product [Vitis vinifera] 0.708 0.629 0.535 4e-27
224061385 355 predicted protein [Populus trichocarpa] 0.900 0.408 0.465 7e-27
255557471 366 Flavonol synthase/flavanone 3-hydroxylas 0.751 0.330 0.484 1e-26
224061381 359 predicted protein [Populus trichocarpa] 0.900 0.403 0.443 4e-26
225462507 366 PREDICTED: protein SRG1 [Vitis vinifera] 0.708 0.311 0.496 6e-26
15219988 358 protein SRG1 [Arabidopsis thaliana] gi|7 0.863 0.388 0.441 2e-25
297842633 357 oxidoreductase [Arabidopsis lyrata subsp 0.726 0.327 0.503 4e-25
>gi|255575133|ref|XP_002528471.1| Naringenin,2-oxoglutarate 3-dioxygenase, putative [Ricinus communis] gi|223532080|gb|EEF33888.1| Naringenin,2-oxoglutarate 3-dioxygenase, putative [Ricinus communis] Back     alignment and taxonomy information
 Score =  137 bits (345), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 85/197 (43%), Positives = 107/197 (54%), Gaps = 42/197 (21%)

Query: 4   LGGFLPVPYVQELAKKPMAVVPPIYMRPKGDTPTISNGTLNSKIPVINMQSLYSEESMDS 63
           LG  L VP VQELAK  +  +PP Y+R   D P I+    N ++PVI+M+ L S+ESM S
Sbjct: 8   LGSSLLVPCVQELAKLSLESIPPRYVRQDQDQP-INVQNQNVEVPVIDMERLLSQESMHS 66

Query: 64  ELAKLDFACKQSGLFQLVNHGK----------EIKEFFYLSMEEKKKYWQDPGEVEGFGQ 113
           ELAKL  AC+  G FQLVNH            E++EFF L ME+KKK WQ PGEVEGFGQ
Sbjct: 67  ELAKLHCACRDWGFFQLVNHQVSASLLEKMKIEVQEFFNLPMEKKKKLWQYPGEVEGFGQ 126

Query: 114 ------------------------ASFLTIKDEEMTGFFENGMQSLRMNYYALCP----- 144
                                   A  L ++ +EMT  FE+G QS+R+NYY  CP     
Sbjct: 127 PLLETLDTYSWEVKNLAKIILAQMAKTLEMEAKEMTEIFEDGHQSIRINYYPPCPQPEKV 186

Query: 145 --VTPLPNNLNLAILID 159
             +TP  +   L IL+ 
Sbjct: 187 IGLTPHSDATGLTILLQ 203

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|255575141|ref|XP_002528475.1| Leucoanthocyanidin dioxygenase, putative [Ricinus communis] gi|223532084|gb|EEF33892.1| Leucoanthocyanidin dioxygenase, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|225463356|ref|XP_002271080.1| PREDICTED: protein SRG1 [Vitis vinifera] Back     alignment and taxonomy information
>gi|297740621|emb|CBI30803.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|224061385|ref|XP_002300453.1| predicted protein [Populus trichocarpa] gi|222847711|gb|EEE85258.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|255557471|ref|XP_002519766.1| Flavonol synthase/flavanone 3-hydroxylase, putative [Ricinus communis] gi|223541183|gb|EEF42739.1| Flavonol synthase/flavanone 3-hydroxylase, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|224061381|ref|XP_002300451.1| predicted protein [Populus trichocarpa] gi|222847709|gb|EEE85256.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|225462507|ref|XP_002269087.1| PREDICTED: protein SRG1 [Vitis vinifera] gi|297740615|emb|CBI30797.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|15219988|ref|NP_173145.1| protein SRG1 [Arabidopsis thaliana] gi|75220747|sp|Q39224.1|SRG1_ARATH RecName: Full=Protein SRG1; Short=AtSRG1; AltName: Full=Protein SENESCENCE-RELATED GENE 1 gi|5734767|gb|AAD50032.1|AC007651_27 SRG1 Protein [Arabidopsis thaliana] gi|479047|emb|CAA55654.1| SRG1 [Arabidopsis thaliana] gi|15081819|gb|AAK82564.1| F6I1.30/F6I1.30 [Arabidopsis thaliana] gi|22655018|gb|AAM98100.1| At1g17020/F6I1.30 [Arabidopsis thaliana] gi|332191410|gb|AEE29531.1| protein SRG1 [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|297842633|ref|XP_002889198.1| oxidoreductase [Arabidopsis lyrata subsp. lyrata] gi|297335039|gb|EFH65457.1| oxidoreductase [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query161
TAIR|locus:2020407 358 SRG1 "senescence-related gene 0.708 0.318 0.480 2e-30
TAIR|locus:2122679 353 AT4G25310 [Arabidopsis thalian 0.689 0.314 0.488 2.6e-30
TAIR|locus:2202980 356 AT1G78550 [Arabidopsis thalian 0.726 0.328 0.457 2.3e-29
TAIR|locus:2020422 361 AT1G17010 [Arabidopsis thalian 0.708 0.315 0.476 2.9e-29
TAIR|locus:2122669 356 AT4G25300 [Arabidopsis thalian 0.832 0.376 0.436 2.3e-23
TAIR|locus:2089428 364 LBO1 "LATERAL BRANCHING OXIDOR 0.689 0.304 0.351 6.2e-17
TAIR|locus:2169697 371 AT5G05600 [Arabidopsis thalian 0.645 0.280 0.316 2.1e-14
TAIR|locus:2042942 353 AT2G38240 [Arabidopsis thalian 0.757 0.345 0.297 1.1e-11
TAIR|locus:2082058 363 JRG21 "jasmonate-regulated gen 0.645 0.286 0.291 2.9e-11
TAIR|locus:2005511 377 GA20OX1 [Arabidopsis thaliana 0.571 0.244 0.301 4.5e-08
TAIR|locus:2020407 SRG1 "senescence-related gene 1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 278 (102.9 bits), Expect = 2.0e-30, Sum P(2) = 2.0e-30
 Identities = 61/127 (48%), Positives = 83/127 (65%)

Query:    10 VPYVQELAK-KPMAVVPPIYMRPKGDTPTISNG-TLNSKIPVINMQSLYSEESMDSELAK 67
             VP VQE+ K K +  VPP Y+R   D   + +   +  +IP+I+M+ L S  +MDSE+ K
Sbjct:    14 VPSVQEMVKEKTITTVPPRYVRSDQDKTEVDDDFDVKIEIPIIDMKRLCSSTTMDSEVEK 73

Query:    68 LDFACKQSGLFQLVNHG----------KEIKEFFYLSMEEKKKYWQDPGEVEGFGQASFL 117
             LDFACK+ G FQLVNHG           EI++FF L MEEKKK+WQ P E+EGFGQA F+
Sbjct:    74 LDFACKEWGFFQLVNHGIDSSFLDKVKSEIQDFFNLPMEEKKKFWQRPDEIEGFGQA-FV 132

Query:   118 TIKDEEM 124
               +D+++
Sbjct:   133 VSEDQKL 139
GO:0005737 "cytoplasm" evidence=ISM
GO:0009813 "flavonoid biosynthetic process" evidence=ISS
GO:0016491 "oxidoreductase activity" evidence=IEA
GO:0016706 "oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors" evidence=IEA;ISS
GO:0055114 "oxidation-reduction process" evidence=IEA
GO:0009737 "response to abscisic acid stimulus" evidence=RCA
GO:0009793 "embryo development ending in seed dormancy" evidence=RCA
GO:0009830 "cell wall modification involved in abscission" evidence=RCA
GO:0009845 "seed germination" evidence=RCA
GO:0010162 "seed dormancy process" evidence=RCA
GO:0010260 "organ senescence" evidence=IEP;RCA
GO:0016682 "oxidoreductase activity, acting on diphenols and related substances as donors, oxygen as acceptor" evidence=ISS
TAIR|locus:2122679 AT4G25310 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2202980 AT1G78550 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2020422 AT1G17010 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2122669 AT4G25300 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2089428 LBO1 "LATERAL BRANCHING OXIDOREDUCTASE 1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2169697 AT5G05600 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2042942 AT2G38240 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2082058 JRG21 "jasmonate-regulated gene 21" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2005511 GA20OX1 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer1.14.11LOW CONFIDENCE prediction!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
GSVIVG00003362001
SubName- Full=Chromosome undetermined scaffold_143, whole genome shotgun sequence; (354 aa)
(Vitis vinifera)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query161
PLN02216 357 PLN02216, PLN02216, protein SRG1 4e-38
PLN02758 361 PLN02758, PLN02758, oxidoreductase, 2OG-Fe(II) oxy 2e-19
PLN02393 362 PLN02393, PLN02393, leucoanthocyanidin dioxygenase 1e-17
pfam14226113 pfam14226, DIOX_N, non-haem dioxygenase in morphin 1e-14
PLN03178 360 PLN03178, PLN03178, leucoanthocyanidin dioxygenase 6e-13
PLN02947 374 PLN02947, PLN02947, oxidoreductase 2e-10
PLN02639 337 PLN02639, PLN02639, oxidoreductase, 2OG-Fe(II) oxy 1e-08
PLN02276 361 PLN02276, PLN02276, gibberellin 20-oxidase 3e-07
PLN02750 345 PLN02750, PLN02750, oxidoreductase, 2OG-Fe(II) oxy 4e-07
PLN02704 335 PLN02704, PLN02704, flavonol synthase 5e-07
PLN00417 348 PLN00417, PLN00417, oxidoreductase, 2OG-Fe(II) oxy 9e-07
PLN02912 348 PLN02912, PLN02912, oxidoreductase, 2OG-Fe(II) oxy 2e-06
PLN02515 358 PLN02515, PLN02515, naringenin,2-oxoglutarate 3-di 4e-06
PLN03176120 PLN03176, PLN03176, flavanone-3-hydroxylase; Provi 4e-06
COG3491 322 COG3491, PcbC, Isopenicillin N synthase and relate 1e-05
PLN02904 357 PLN02904, PLN02904, oxidoreductase 2e-05
PLN02984 341 PLN02984, PLN02984, oxidoreductase, 2OG-Fe(II) oxy 8e-05
PLN02254 358 PLN02254, PLN02254, gibberellin 3-beta-dioxygenase 9e-05
PLN02299 321 PLN02299, PLN02299, 1-aminocyclopropane-1-carboxyl 1e-04
PTZ00273 320 PTZ00273, PTZ00273, oxidase reductase; Provisional 5e-04
>gnl|CDD|215129 PLN02216, PLN02216, protein SRG1 Back     alignment and domain information 
 Score =  132 bits (334), Expect = 4e-38
 Identities = 74/154 (48%), Positives = 97/154 (62%), Gaps = 15/154 (9%)

Query: 10  VPYVQELAKKPM-AVVPPIYMRPKGDTPTISNGT-LNSKIPVINMQSLYSEESMDSELAK 67
           VP VQE+ K+ M   VPP Y+R   D   I+  + L+S+IP+I+M+ L S  +MDSE+ K
Sbjct: 14  VPSVQEMVKEKMITTVPPRYVRSDQDKTEIAVDSGLSSEIPIIDMKRLCSSTAMDSEVEK 73

Query: 68  LDFACKQSGLFQLVNHG----------KEIKEFFYLSMEEKKKYWQDPGEVEGFGQASFL 117
           LDFACK+ G FQLVNHG           EI++FF L MEEKKK WQ PGE+EGFGQA F+
Sbjct: 74  LDFACKEWGFFQLVNHGIDSSFLDKVKSEIQDFFNLPMEEKKKLWQRPGEIEGFGQA-FV 132

Query: 118 TIKDEEM--TGFFENGMQSLRMNYYALCPVTPLP 149
             +D+++     F   MQ +R+    L P  PLP
Sbjct: 133 VSEDQKLDWADMFFLTMQPVRLRKPHLFPKLPLP 166

Length = 357
>gnl|CDD|215404 PLN02758, PLN02758, oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>gnl|CDD|215220 PLN02393, PLN02393, leucoanthocyanidin dioxygenase like protein Back     alignment and domain information
>gnl|CDD|222608 pfam14226, DIOX_N, non-haem dioxygenase in morphine synthesis N-terminal Back     alignment and domain information
>gnl|CDD|215614 PLN03178, PLN03178, leucoanthocyanidin dioxygenase; Provisional Back     alignment and domain information
>gnl|CDD|215510 PLN02947, PLN02947, oxidoreductase Back     alignment and domain information
>gnl|CDD|178245 PLN02639, PLN02639, oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>gnl|CDD|215156 PLN02276, PLN02276, gibberellin 20-oxidase Back     alignment and domain information
>gnl|CDD|178351 PLN02750, PLN02750, oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>gnl|CDD|166345 PLN02704, PLN02704, flavonol synthase Back     alignment and domain information
>gnl|CDD|177810 PLN00417, PLN00417, oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>gnl|CDD|178500 PLN02912, PLN02912, oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>gnl|CDD|178130 PLN02515, PLN02515, naringenin,2-oxoglutarate 3-dioxygenase Back     alignment and domain information
>gnl|CDD|178720 PLN03176, PLN03176, flavanone-3-hydroxylase; Provisional Back     alignment and domain information
>gnl|CDD|226022 COG3491, PcbC, Isopenicillin N synthase and related dioxygenases [General function prediction only] Back     alignment and domain information
>gnl|CDD|178492 PLN02904, PLN02904, oxidoreductase Back     alignment and domain information
>gnl|CDD|215534 PLN02984, PLN02984, oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>gnl|CDD|215142 PLN02254, PLN02254, gibberellin 3-beta-dioxygenase Back     alignment and domain information
>gnl|CDD|215168 PLN02299, PLN02299, 1-aminocyclopropane-1-carboxylate oxidase Back     alignment and domain information
>gnl|CDD|140299 PTZ00273, PTZ00273, oxidase reductase; Provisional Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 161
PLN02758 361 oxidoreductase, 2OG-Fe(II) oxygenase family protei 100.0
PLN02216 357 protein SRG1 100.0
PLN02904 357 oxidoreductase 100.0
PLN02393 362 leucoanthocyanidin dioxygenase like protein 100.0
PLN02947 374 oxidoreductase 100.0
PLN03178 360 leucoanthocyanidin dioxygenase; Provisional 100.0
PLN00417 348 oxidoreductase, 2OG-Fe(II) oxygenase family protei 100.0
PLN02912 348 oxidoreductase, 2OG-Fe(II) oxygenase family protei 100.0
PLN02276 361 gibberellin 20-oxidase 100.0
PLN02254 358 gibberellin 3-beta-dioxygenase 100.0
PLN02515 358 naringenin,2-oxoglutarate 3-dioxygenase 100.0
PLN02639 337 oxidoreductase, 2OG-Fe(II) oxygenase family protei 100.0
PLN02704 335 flavonol synthase 100.0
PLN02750 345 oxidoreductase, 2OG-Fe(II) oxygenase family protei 100.0
KOG0143 322 consensus Iron/ascorbate family oxidoreductases [S 99.97
PTZ00273 320 oxidase reductase; Provisional 99.97
PLN02997 325 flavonol synthase 99.97
PLN02299 321 1-aminocyclopropane-1-carboxylate oxidase 99.97
COG3491 322 PcbC Isopenicillin N synthase and related dioxygen 99.96
PLN02156 335 gibberellin 2-beta-dioxygenase 99.96
PLN03002 332 oxidoreductase, 2OG-Fe(II) oxygenase family protei 99.96
PLN02485 329 oxidoreductase 99.96
PLN02365 300 2-oxoglutarate-dependent dioxygenase 99.95
PLN02984 341 oxidoreductase, 2OG-Fe(II) oxygenase family protei 99.95
PLN02403 303 aminocyclopropanecarboxylate oxidase 99.95
PLN03176120 flavanone-3-hydroxylase; Provisional 99.89
PF14226116 DIOX_N: non-haem dioxygenase in morphine synthesis 99.74
PLN03001 262 oxidoreductase, 2OG-Fe(II) oxygenase family protei 99.69
PF0317198 2OG-FeII_Oxy: 2OG-Fe(II) oxygenase superfamily Ent 89.73
>PLN02758 oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information 
Probab=100.00  E-value=1.1e-38  Score=267.92  Aligned_cols=152  Identities=36%  Similarity=0.648  Sum_probs=127.8

Q ss_pred             CchhHHHHHhCCCCCCCCCccCCCCCCCCCC--CCCCCCCCceeeCCCCCCCChh--HHHHHHHHHHHhhCceEEEecch
Q 039640            9 PVPYVQELAKKPMAVVPPIYMRPKGDTPTIS--NGTLNSKIPVINMQSLYSEESM--DSELAKLDFACKQSGLFQLVNHG   84 (161)
Q Consensus         9 ~~~~v~~l~~~~~~~vp~~y~~p~~~~~~~~--~~~~~~~iPvIDls~~~~~~~~--~~~~~~l~~A~~~~GFf~l~nhG   84 (161)
                      ++.+||+|+++|.++||++|++|+++||...  ......+||||||+.+..++..  ++++++|.+||++||||||+|||
T Consensus        13 ~~~~~~~l~~~~~~~vp~~~v~~~~~~p~~~~~~~~~~~~IPvIDl~~l~~~~~~~~~~~~~~l~~Ac~~~GFF~v~nHG   92 (361)
T PLN02758         13 QIDDVQELRKSKPTTVPERFIRDMDERPDLASDTLHAPDDIPVIDFSRLVKGDNDELFSEILKLRLACEEWGFFQVINHG   92 (361)
T ss_pred             ccccHHHHHhcCCCCCCHHHcCCchhccccccccccCCCCCCeEEchhhcCCChHHHHHHHHHHHHHHHhCeEEEEecCC
Confidence            4567999999999999999999999988542  1123468999999988654432  45789999999999999999999


Q ss_pred             H----------HHHHHhcCCHHHHhhccCCCCCccccccccc--------------------------------------
Q 039640           85 K----------EIKEFFYLSMEEKKKYWQDPGEVEGFGQASF--------------------------------------  116 (161)
Q Consensus        85 I----------~~~~fF~lp~e~K~~~~~~~~~~~GY~~~~~--------------------------------------  116 (161)
                      |          ++++||+||.|+|+++...++..+||+..+.                                      
T Consensus        93 i~~~l~~~~~~~~~~FF~LP~eeK~k~~~~~~~~~GY~~~~~~~~~~~~d~~e~~~~~~~p~~~~~~~~WP~~~~~fr~~  172 (361)
T PLN02758         93 IELELLEEIEKVAREFFMLPLEEKQKYPMAPGTVQGYGQAFVFSEDQKLDWCNMFALGVEPHFIRNPKLWPTKPARFSET  172 (361)
T ss_pred             CCHHHHHHHHHHHHHHhcCCHHHHHHhcccCCCccccCcccccccccccCeeEEEEeeccCccccccccCccccHHHHHH
Confidence            9          7999999999999998765555678743100                                      


Q ss_pred             ----------------------cCCChhhHHhhhcCCcceeEEEeeCCCCC-------CCCCCCCceeEEEeC
Q 039640          117 ----------------------LTIKDEEMTGFFENGMQSLRMNYYALCPV-------TPLPNNLNLAILIDK  160 (161)
Q Consensus       117 ----------------------Lgl~~~~~~~~~~~~~~~lr~~~YPp~p~-------~~HtD~g~lTiL~qd  160 (161)
                                            |||++++|.+.+..+.+.||+||||||++       ++|||+|+||||+||
T Consensus       173 ~~~y~~~~~~l~~~ll~~la~~Lgl~~~~f~~~~~~~~~~lR~~~YP~~~~~~~~~g~~~HtD~g~lTlL~qd  245 (361)
T PLN02758        173 LEVYSREIRELCQRLLKYIAMTLGLKEDRFEEMFGEAVQAVRMNYYPPCSRPDLVLGLSPHSDGSALTVLQQG  245 (361)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHcCCChhhhHHHhcCccceeeeecCCCCCCcccccCccCccCCceeEEEEeC
Confidence                                  89999999999988889999999999975       899999999999997

>PLN02216 protein SRG1 Back     alignment and domain information
>PLN02904 oxidoreductase Back     alignment and domain information
>PLN02393 leucoanthocyanidin dioxygenase like protein Back     alignment and domain information
>PLN02947 oxidoreductase Back     alignment and domain information
>PLN03178 leucoanthocyanidin dioxygenase; Provisional Back     alignment and domain information
>PLN00417 oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>PLN02912 oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>PLN02276 gibberellin 20-oxidase Back     alignment and domain information
>PLN02254 gibberellin 3-beta-dioxygenase Back     alignment and domain information
>PLN02515 naringenin,2-oxoglutarate 3-dioxygenase Back     alignment and domain information
>PLN02639 oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>PLN02704 flavonol synthase Back     alignment and domain information
>PLN02750 oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>KOG0143 consensus Iron/ascorbate family oxidoreductases [Secondary metabolites biosynthesis, transport and catabolism; General function prediction only] Back     alignment and domain information
>PTZ00273 oxidase reductase; Provisional Back     alignment and domain information
>PLN02997 flavonol synthase Back     alignment and domain information
>PLN02299 1-aminocyclopropane-1-carboxylate oxidase Back     alignment and domain information
>COG3491 PcbC Isopenicillin N synthase and related dioxygenases [General function prediction only] Back     alignment and domain information
>PLN02156 gibberellin 2-beta-dioxygenase Back     alignment and domain information
>PLN03002 oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>PLN02485 oxidoreductase Back     alignment and domain information
>PLN02365 2-oxoglutarate-dependent dioxygenase Back     alignment and domain information
>PLN02984 oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>PLN02403 aminocyclopropanecarboxylate oxidase Back     alignment and domain information
>PLN03176 flavanone-3-hydroxylase; Provisional Back     alignment and domain information
>PF14226 DIOX_N: non-haem dioxygenase in morphine synthesis N-terminal; PDB: 3OOX_A 1BK0_A 1IPS_B 1QIQ_A 1OC1_A 2Y86_A 2Y60_A 1W03_A 2VE1_A 1QJF_A Back     alignment and domain information
>PLN03001 oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>PF03171 2OG-FeII_Oxy: 2OG-Fe(II) oxygenase superfamily Entry for Lysyl hydrolases This Prosite entry is a sub-family of the Pfam entry; InterPro: IPR005123 This domain is found in members of the 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily [], as well as the C-terminal of prolyl 4-hydroxylase alpha subunit Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query161
1gp5_A 356 Anthocyanidin Synthase From Arabidopsis Thaliana Co 3e-08
2brt_A 355 Anthocyanidin Synthase From Arabidopsis Thaliana Co 3e-08
1gp4_A 356 Anthocyanidin Synthase From Arabidopsis Thaliana (S 4e-08
>pdb|1GP5|A Chain A, Anthocyanidin Synthase From Arabidopsis Thaliana Complexed With Trans-Dihydroquercetin Length = 356 Back     alignment and structure 
Iteration: 1

 Score = 54.3 bits (129), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 39/126 (30%), Positives = 67/126 (53%), Gaps = 20/126 (15%)
Query: 7   FLPVPYVQELAKKPMAVVPPIYMRPKGDTPTISNGTLNSK------IPVINMQSLYSEES 60
            + V  V+ LAK  +  +P  Y+RPK +  +I++  L  K      +P I+++++ S++ 
Sbjct: 1   MVAVERVESLAKSGIISIPKEYIRPKEELESINDVFLEEKKEDGPQVPTIDLKNIESDDE 60
Query: 61  MDSE--LAKLDFACKQSGLFQLVNHG----------KEIKEFFYLSMEEKKKYWQD--PG 106
              E  + +L  A    G+  L+NHG          K  +EFF LS+EEK+KY  D   G
Sbjct: 61  KIRENCIEELKKASLDWGVMHLINHGIPADLMERVKKAGEEFFSLSVEEKEKYANDQATG 120
Query: 107 EVEGFG 112
           +++G+G
Sbjct: 121 KIQGYG 126
>pdb|2BRT|A Chain A, Anthocyanidin Synthase From Arabidopsis Thaliana Complexed With Naringenin Length = 355 Back     alignment and structure
>pdb|1GP4|A Chain A, Anthocyanidin Synthase From Arabidopsis Thaliana (Selenomethionine Substituted) Length = 356 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query161
1gp6_A 356 Leucoanthocyanidin dioxygenase; 2-oxoglutarate dep 3e-29
1w9y_A 319 1-aminocyclopropane-1-carboxylate oxidase 1; oxyge 8e-20
1dcs_A 311 Deacetoxycephalosporin C synthase; ferrous oxygena 1e-13
1odm_A 331 Isopenicillin N synthase; antibiotic biosynthesis, 9e-10
3oox_A 312 Putative 2OG-Fe(II) oxygenase family protein; stru 8e-09
3on7_A 280 Oxidoreductase, iron/ascorbate family; structural 3e-08
>1gp6_A Leucoanthocyanidin dioxygenase; 2-oxoglutarate dependent dioxygenase, flavonoid biosynthesis; HET: MES QUE DH2; 1.75A {Arabidopsis thaliana} SCOP: b.82.2.1 PDB: 1gp5_A* 1gp4_A* 2brt_A* Length = 356 Back     alignment and structure
 Score =  108 bits (273), Expect = 3e-29
 Identities = 39/127 (30%), Positives = 67/127 (52%), Gaps = 20/127 (15%)

Query: 8   LPVPYVQELAKKPMAVVPPIYMRPKGDTPTISNGTLNSK------IPVINMQSLYSEESM 61
           + V  V+ LAK  +  +P  Y+RPK +  +I++  L  K      +P I+++++ S++  
Sbjct: 2   VAVERVESLAKSGIISIPKEYIRPKEELESINDVFLEEKKEDGPQVPTIDLKNIESDDEK 61

Query: 62  DSE--LAKLDFACKQSGLFQLVNHG----------KEIKEFFYLSMEEKKKYWQD--PGE 107
             E  + +L  A    G+  L+NHG          K  +EFF LS+EEK+KY  D   G+
Sbjct: 62  IRENCIEELKKASLDWGVMHLINHGIPADLMERVKKAGEEFFSLSVEEKEKYANDQATGK 121

Query: 108 VEGFGQA 114
           ++G+G  
Sbjct: 122 IQGYGSK 128
>1w9y_A 1-aminocyclopropane-1-carboxylate oxidase 1; oxygenase, 2OG oxygenase, ACCO, ACC oxidase; 2.1A {Petunia hybrida} SCOP: b.82.2.1 PDB: 1wa6_X Length = 319 Back     alignment and structure
>1dcs_A Deacetoxycephalosporin C synthase; ferrous oxygenase, 2-oxoglutarate, oxidoreduc antibiotics, merohedral twinning; 1.30A {Streptomyces clavuligerus} SCOP: b.82.2.1 PDB: 1rxf_A 1rxg_A* 1unb_A* 1uo9_A 1uob_A* 1uof_A* 1uog_A* 2jb8_A 1w28_A 1w2a_X 1w2n_A* 1w2o_A* 1hjg_A 1hjf_A 1e5h_A 1e5i_A* Length = 311 Back     alignment and structure
>1odm_A Isopenicillin N synthase; antibiotic biosynthesis, B-lactam antibiotic, oxygenase, penicillin biosynthesis, oxidoreductase, iron; HET: ASV; 1.15A {Emericella nidulans} SCOP: b.82.2.1 PDB: 1blz_A* 1hb1_A* 1hb2_A* 1hb3_A* 1hb4_A* 1ips_A 1obn_A* 1oc1_A* 1bk0_A* 1odn_A* 1qiq_A* 1qje_A* 1qjf_A* 1uzw_A* 1w03_A* 1w04_A* 1w05_A* 1w06_A* 1w3v_A* 1w3x_A* ... Length = 331 Back     alignment and structure
>3oox_A Putative 2OG-Fe(II) oxygenase family protein; structural genomics, joint center for structural genomics; HET: MSE; 1.44A {Caulobacter crescentus CB15} Length = 312 Back     alignment and structure
>3on7_A Oxidoreductase, iron/ascorbate family; structural genomics, joint center for structural genomics, J protein structure initiative; 2.20A {Shewanella oneidensis} Length = 280 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query161
1gp6_A 356 Leucoanthocyanidin dioxygenase; 2-oxoglutarate dep 100.0
3oox_A 312 Putative 2OG-Fe(II) oxygenase family protein; stru 99.97
1w9y_A 319 1-aminocyclopropane-1-carboxylate oxidase 1; oxyge 99.96
3on7_A280 Oxidoreductase, iron/ascorbate family; structural 99.95
1odm_A 331 Isopenicillin N synthase; antibiotic biosynthesis, 99.94
1dcs_A 311 Deacetoxycephalosporin C synthase; ferrous oxygena 99.94
>1gp6_A Leucoanthocyanidin dioxygenase; 2-oxoglutarate dependent dioxygenase, flavonoid biosynthesis; HET: MES QUE DH2; 1.75A {Arabidopsis thaliana} SCOP: b.82.2.1 PDB: 1gp5_A* 1gp4_A* 2brt_A* Back     alignment and structure
Probab=100.00  E-value=2.3e-38  Score=264.24  Aligned_cols=153  Identities=27%  Similarity=0.530  Sum_probs=126.6

Q ss_pred             CchhHHHHHhCCCCCCCCCccCCCCCCCCCCC---CC---CCCCCceeeCCCCCCCChh--HHHHHHHHHHHhhCceEEE
Q 039640            9 PVPYVQELAKKPMAVVPPIYMRPKGDTPTISN---GT---LNSKIPVINMQSLYSEESM--DSELAKLDFACKQSGLFQL   80 (161)
Q Consensus         9 ~~~~v~~l~~~~~~~vp~~y~~p~~~~~~~~~---~~---~~~~iPvIDls~~~~~~~~--~~~~~~l~~A~~~~GFf~l   80 (161)
                      ++++||+|+++|+.+||++|++|+.++|....   ..   ...+||||||+.+.+++..  .+++++|.+||++||||||
T Consensus         3 ~~~~v~~l~~~~~~~vP~~~~~p~~~~~~~~~~~~~~~~~~~~~iPvIDls~l~~~~~~~~~~~~~~l~~A~~~~GFF~v   82 (356)
T 1gp6_A            3 AVERVESLAKSGIISIPKEYIRPKEELESINDVFLEEKKEDGPQVPTIDLKNIESDDEKIRENCIEELKKASLDWGVMHL   82 (356)
T ss_dssp             CCCCHHHHHHTTCSSCCGGGSCCHHHHTTCCCHHHHHHCCCSCCCCEEECTTTTCSCHHHHHHHHHHHHHHHHHTSEEEE
T ss_pred             CcccHHHHHhcCCCCCCHHhcCCchhcccccccccccccccCCCCCEEEchhccCCChHHHHHHHHHHHHHHHhCCEEEE
Confidence            46789999999999999999999888775321   00   1247999999998765542  4588999999999999999


Q ss_pred             ecchH----------HHHHHhcCCHHHHhhccCCC--CCccccccccc--------------------------------
Q 039640           81 VNHGK----------EIKEFFYLSMEEKKKYWQDP--GEVEGFGQASF--------------------------------  116 (161)
Q Consensus        81 ~nhGI----------~~~~fF~lp~e~K~~~~~~~--~~~~GY~~~~~--------------------------------  116 (161)
                      +||||          .+++||+||.|+|+++....  ...+||+..+.                                
T Consensus        83 ~nHGi~~~l~~~~~~~~~~FF~lP~eeK~~~~~~~~~~~~~Gy~~~~~~~~~~~~d~kE~~~~~~~p~~~~~~~~wP~~~  162 (356)
T 1gp6_A           83 INHGIPADLMERVKKAGEEFFSLSVEEKEKYANDQATGKIQGYGSKLANNASGQLEWEDYFFHLAYPEEKRDLSIWPKTP  162 (356)
T ss_dssp             ESCSCCHHHHHHHHHHHHHHHTSCHHHHGGGBCBGGGTBCSEEECCCCCSTTCCCCSCEEEEEEEESGGGCCGGGSCCSS
T ss_pred             eCCCCCHHHHHHHHHHHHHHHCCCHHHHHhhcccccccCccccCcCcccCCCCCCChhheeeeecCCccccccccCCCcc
Confidence            99999          79999999999999987653  25677753210                                


Q ss_pred             ----------------------------cCCChhhHHhhhc---CCcceeEEEeeCCCCC-------CCCCCCCceeEEE
Q 039640          117 ----------------------------LTIKDEEMTGFFE---NGMQSLRMNYYALCPV-------TPLPNNLNLAILI  158 (161)
Q Consensus       117 ----------------------------Lgl~~~~~~~~~~---~~~~~lr~~~YPp~p~-------~~HtD~g~lTiL~  158 (161)
                                                  |||++++|.+.+.   .+.+.||+||||||++       ++|||+|+||||+
T Consensus       163 ~~fr~~~~~y~~~~~~l~~~ll~~la~~Lgl~~~~f~~~~~~~~~~~~~lrl~~YPp~~~~~~~~g~~~HtD~g~lTlL~  242 (356)
T 1gp6_A          163 SDYIEATSEYAKCLRLLATKVFKALSVGLGLEPDRLEKEVGGLEELLLQMKINYYPKCPQPELALGVEAHTDVSALTFIL  242 (356)
T ss_dssp             TTHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCTTHHHHHTTHHHHCEEEEEEEEECCCSSTTTCCSEEEECCCSSEEEEE
T ss_pred             hhhhHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHhcccCCccceeeeeecCCCCCcccccCcCCccCCCeEEEEE
Confidence                                        8999999999987   4778999999999975       8999999999999


Q ss_pred             eCC
Q 039640          159 DKG  161 (161)
Q Consensus       159 qd~  161 (161)
                      ||+
T Consensus       243 qd~  245 (356)
T 1gp6_A          243 HNM  245 (356)
T ss_dssp             ECS
T ss_pred             EcC
Confidence            984
>3oox_A Putative 2OG-Fe(II) oxygenase family protein; structural genomics, joint center for structural genomics; HET: MSE; 1.44A {Caulobacter crescentus CB15} Back     alignment and structure
>1w9y_A 1-aminocyclopropane-1-carboxylate oxidase 1; oxygenase, 2OG oxygenase, ACCO, ACC oxidase; 2.1A {Petunia hybrida} SCOP: b.82.2.1 PDB: 1wa6_X Back     alignment and structure
>3on7_A Oxidoreductase, iron/ascorbate family; structural genomics, joint center for structural genomics, J protein structure initiative; 2.20A {Shewanella oneidensis} Back     alignment and structure
>1odm_A Isopenicillin N synthase; antibiotic biosynthesis, B-lactam antibiotic, oxygenase, penicillin biosynthesis, oxidoreductase, iron; HET: ASV; 1.15A {Emericella nidulans} SCOP: b.82.2.1 PDB: 1blz_A* 1hb1_A* 1hb2_A* 1hb3_A* 1hb4_A* 1ips_A 1obn_A* 1oc1_A* 1bk0_A* 1odn_A* 1qiq_A* 1qje_A* 1qjf_A* 1uzw_A* 1w03_A* 1w04_A* 1w05_A* 1w06_A* 1w3v_A* 1w3x_A* ... Back     alignment and structure
>1dcs_A Deacetoxycephalosporin C synthase; ferrous oxygenase, 2-oxoglutarate, oxidoreduc antibiotics, merohedral twinning; 1.30A {Streptomyces clavuligerus} SCOP: b.82.2.1 PDB: 1rxf_A 1rxg_A* 1unb_A* 1uo9_A 1uob_A* 1uof_A* 1uog_A* 2jb8_A 1w28_A 1w2a_X 1w2n_A* 1w2o_A* 1hjg_A 1hjf_A 1e5h_A 1e5i_A* Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 161
d1gp6a_ 349 b.82.2.1 (A:) Anthocyanidin synthase {Mouse-ear cr 1e-17
d1w9ya1 307 b.82.2.1 (A:2-308) 1-aminocyclopropane-1-carboxyla 3e-11
d1dcsa_ 311 b.82.2.1 (A:) Deacetoxycephalosporin C synthase {S 5e-11
d1odma_ 329 b.82.2.1 (A:) Isopenicillin N synthase {Emericella 3e-09
>d1gp6a_ b.82.2.1 (A:) Anthocyanidin synthase {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 349 Back     information, alignment and structure

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: Clavaminate synthase-like
family: Penicillin synthase-like
domain: Anthocyanidin synthase
species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]

 Score = 76.1 bits (186), Expect = 1e-17
 Identities = 35/117 (29%), Positives = 60/117 (51%), Gaps = 18/117 (15%)

Query: 8   LPVPYVQELAKKPMAVVPPIYMRPKGDTPTISNGTLNS------KIPVINMQSLYSEESM 61
           + V  V+ LAK  +  +P  Y+RPK +  +I++  L        ++P I+++++ S++  
Sbjct: 1   VAVERVESLAKSGIISIPKEYIRPKEELESINDVFLEEKKEDGPQVPTIDLKNIESDDEK 60

Query: 62  DSE--LAKLDFACKQSGLFQLVNHG----------KEIKEFFYLSMEEKKKYWQDPG 106
             E  + +L  A    G+  L+NHG          K  +EFF LS+EEK+KY  D  
Sbjct: 61  IRENCIEELKKASLDWGVMHLINHGIPADLMERVKKAGEEFFSLSVEEKEKYANDQA 117
>d1w9ya1 b.82.2.1 (A:2-308) 1-aminocyclopropane-1-carboxylate oxidase 1 {Petunia hybrida [TaxId: 4102]} Length = 307 Back     information, alignment and structure
>d1dcsa_ b.82.2.1 (A:) Deacetoxycephalosporin C synthase {Streptomyces clavuligerus [TaxId: 1901]} Length = 311 Back     information, alignment and structure
>d1odma_ b.82.2.1 (A:) Isopenicillin N synthase {Emericella nidulans [TaxId: 162425]} Length = 329 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query161
d1gp6a_ 349 Anthocyanidin synthase {Mouse-ear cress (Arabidops 100.0
d1w9ya1 307 1-aminocyclopropane-1-carboxylate oxidase 1 {Petun 99.96
d1dcsa_ 311 Deacetoxycephalosporin C synthase {Streptomyces cl 99.96
d1odma_ 329 Isopenicillin N synthase {Emericella nidulans [Tax 99.92
>d1gp6a_ b.82.2.1 (A:) Anthocyanidin synthase {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]} Back     information, alignment and structure
class: All beta proteins
fold: Double-stranded beta-helix
superfamily: Clavaminate synthase-like
family: Penicillin synthase-like
domain: Anthocyanidin synthase
species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=100.00  E-value=9.1e-39  Score=261.91  Aligned_cols=153  Identities=27%  Similarity=0.529  Sum_probs=126.9

Q ss_pred             CchhHHHHHhCCCCCCCCCccCCCCCCCCCCC------CCCCCCCceeeCCCCCCCChh--HHHHHHHHHHHhhCceEEE
Q 039640            9 PVPYVQELAKKPMAVVPPIYMRPKGDTPTISN------GTLNSKIPVINMQSLYSEESM--DSELAKLDFACKQSGLFQL   80 (161)
Q Consensus         9 ~~~~v~~l~~~~~~~vp~~y~~p~~~~~~~~~------~~~~~~iPvIDls~~~~~~~~--~~~~~~l~~A~~~~GFf~l   80 (161)
                      .+.+||+|+++|+.+||++|++|+.++|.+..      +..+.+||||||+.+.++++.  ++++++|.+||++||||||
T Consensus         2 ~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~IPvIDls~l~~~d~~~r~~~~~~l~~A~~~~GFf~l   81 (349)
T d1gp6a_           2 AVERVESLAKSGIISIPKEYIRPKEELESINDVFLEEKKEDGPQVPTIDLKNIESDDEKIRENCIEELKKASLDWGVMHL   81 (349)
T ss_dssp             CCCCHHHHHHTTCSSCCGGGSCCHHHHTTCCCHHHHHHCCCSCCCCEEECTTTTCSCHHHHHHHHHHHHHHHHHTSEEEE
T ss_pred             CCcchHHHHhCCCccCCHhhcCChhhcCCCCccccccccCCCCCcCeEEChhcCCCCHHHHHHHHHHHHHHHHhCCEEEE
Confidence            45689999999999999999999999887632      345678999999999877653  5689999999999999999


Q ss_pred             ecchH----------HHHHHhcCCHHHHhhccCCC--CCccccccccc--------------------------------
Q 039640           81 VNHGK----------EIKEFFYLSMEEKKKYWQDP--GEVEGFGQASF--------------------------------  116 (161)
Q Consensus        81 ~nhGI----------~~~~fF~lp~e~K~~~~~~~--~~~~GY~~~~~--------------------------------  116 (161)
                      +||||          ++++||+||.|+|+++....  +...||+....                                
T Consensus        82 ~nHGI~~~li~~~~~~~~~FF~lP~eeK~k~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~wp~~~  161 (349)
T d1gp6a_          82 INHGIPADLMERVKKAGEEFFSLSVEEKEKYANDQATGKIQGYGSKLANNASGQLEWEDYFFHLAYPEEKRDLSIWPKTP  161 (349)
T ss_dssp             ESCSCCHHHHHHHHHHHHHHHTSCHHHHGGGBCBGGGTBCSEEECCCCCSTTCCCCSCEEEEEEEESGGGCCGGGSCCSS
T ss_pred             EccCCCHHHHHHHHHHHHHHHcCCHHHHhhhhcccccCCccccccccccccccccchhhhhccccccccccccccccccc
Confidence            99999          89999999999999986542  22333332100                                


Q ss_pred             ----------------------------cCCChhhHHhhhc---CCcceeEEEeeCCCCC-------CCCCCCCceeEEE
Q 039640          117 ----------------------------LTIKDEEMTGFFE---NGMQSLRMNYYALCPV-------TPLPNNLNLAILI  158 (161)
Q Consensus       117 ----------------------------Lgl~~~~~~~~~~---~~~~~lr~~~YPp~p~-------~~HtD~g~lTiL~  158 (161)
                                                  ||+++++|.+.+.   .+.+.||+||||||++       ++|||+|+||||+
T Consensus       162 ~~f~e~~~~~~~~~~~la~~ll~~la~~Lgl~~~~~~~~~~~~~~~~~~lrl~~Yp~~~~~~~~~g~~~HtD~g~lTlL~  241 (349)
T d1gp6a_         162 SDYIEATSEYAKCLRLLATKVFKALSVGLGLEPDRLEKEVGGLEELLLQMKINYYPKCPQPELALGVEAHTDVSALTFIL  241 (349)
T ss_dssp             TTHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCTTHHHHHTTHHHHCEEEEEEEEECCCSSTTTCCSEEEECCCSSEEEEE
T ss_pred             chHHHHHHHHHHHHHHHHHhhhHHHHHHcCCCHHHHHHHhccccccceeeeecccccccchhhccccccCCCCcceEEEe
Confidence                                        9999999998873   4567899999999986       8999999999999


Q ss_pred             eCC
Q 039640          159 DKG  161 (161)
Q Consensus       159 qd~  161 (161)
                      ||+
T Consensus       242 q~~  244 (349)
T d1gp6a_         242 HNM  244 (349)
T ss_dssp             ECS
T ss_pred             ccC
Confidence            984
>d1w9ya1 b.82.2.1 (A:2-308) 1-aminocyclopropane-1-carboxylate oxidase 1 {Petunia hybrida [TaxId: 4102]} Back     information, alignment and structure
>d1dcsa_ b.82.2.1 (A:) Deacetoxycephalosporin C synthase {Streptomyces clavuligerus [TaxId: 1901]} Back     information, alignment and structure
>d1odma_ b.82.2.1 (A:) Isopenicillin N synthase {Emericella nidulans [TaxId: 162425]} Back     information, alignment and structure