Citrus Sinensis ID: 039648

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250----
Protein Sequence
IKPQIHDKFVGYHDGLFCIMQSSTNRLTIWNPATREFRNLPNYKYCNSSNRLIPPSTFICLESDPINNDFKLLFVHNLWNEKRKRYGKVPNVQVYGFRTNSWREVHGHQLDRYFKVCYWLVIADTRDLKVILSFHMDNEVFEEIKIPPHVNYYSSISLYEDSLSIVIPDAEQCFEIWVMNDNKCWAKHLTLGPFFNFRINFGFWKNDAFFIESNSRIYGGCLFLHEHRTKEIKNLQVTNPQFVVIYKESLMTIQ
Secondary Structure (PSIPRED)
ccccccEEEEEEEccEEEEEEccccEEEEEcccccEEEEccccccccccccccccccEEEEEEEcccccEEEEEEEEEEcccccccccccEEEEEEcccccEEEEccccccEEEEEEEEEEEEcccccEEEEEEEccccEEEEEcccccccccccEEEEccEEEEEEcccccEEEEEEEcccccEEEEEEEcccccccEEEEEEEccEEEEEEccccccEEEEEEEccccEEEEEEEccccEEEEEEcccEEEc
Secondary Structure Prediction (SSPRO)
ccccccHHEEccccEEEEEEEccccEEEEEccccccEEcccccccccccccccccEEEEEEccccccccEEEEEEEEEccccccccccccEEEEEEEcccccEEEccccccEEEccEEEEEEEcccccEEEEEEEccccEEEEEccccccccccEEEEEEEccEEEEEcccccEEEEEEcccccEEEEEEEcccccccccEEEEcccEEEEEEcccEEEEEEEEEcccccEEEEcccccccEEEEEEEEEEEcc
Coil and Loop (DISEMBL)
ikpqihdkfvgyhDGLFCIMqsstnrltiwnpatrefrnlpnykycnssnrlippstficlesdpinndfKLLFVHNLWNEkrkrygkvpnvqvygfrtnswrevhghqLDRYFKVCYWLVIADTRDLKVILSFHmdnevfeeikipphvnyyssislyedslsivipdaeQCFEIWVMNDNkcwakhltlgpffnfrinfgfwkndaffiesnsriyggclflhEHRTKEIknlqvtnpqFVVIYKESLMTIQ
Flexible Loop (DISEMBL)
ikpqihdkfvGYHDGLFCIMQSSTNRLTIWNPATREFRNLPNYKYCNSSNRLIPPSTFICLESDPINNDFKLLFVHNLWnekrkrygkvpnvqVYGFRTNSWREVHGHQLDRYFKVCYWLVIADTRDLKVILSFHMDNEVFEEIKIPPHVNYYSSISLYEDSLSIVIPDAEQCFEIWVMNDNKCWAKHLTLGPFFNFRINFGFWKNDAFFIESNSRIYGGCLFLHEHRTKEiknlqvtnpqfVVIYKESLMTIQ
Low Complexity Region (SEG)
IKPQIHDKFVGYHDGLFCIMQSSTNRLTIWNPATREFRNLPNYKYCNSSNRLIPPSTFICLESDPINNDFKLLFVHNLWNEKRKRYGKVPNVQVYGFRTNSWREVHGHQLDRYFKVCYWLVIADTRDLKVILSFHMDNEVFEEIKIPPHVNYYSSISLYEDSLSIVIPDAEQCFEIWVMNDNKCWAKHLTLGPFFNFRINFGFWKNDAFFIESNSRIYGGCLFLHEHRTKEIKNLQVTNPQFVVIYKESLMTIQ
Disordered region (IsUnstruct)
*****HDKFVGYHDGLFCIMQSSTNRLTIWNPATREFRNLPNYKYCNSSNRLIPPSTFICLESDPINNDFKLLFVHNLWNEKRKRYGKVPNVQVYGFRTNSWREVHGHQLDRYFKVCYWLVIADTRDLKVILSFHMDNEVFEEIKIPPHVNYYSSISLYEDSLSIVIPDAEQCFEIWVMNDNKCWAKHLTLGPFFNFRINFGFWKNDAFFIESNSRIYGGCLFLHEHRTKEIKNLQVTNPQFVVIYKES*****
Disordered Region (DISOPRED)
*KPQIHDKFVGYHDGLFCIMQSSTNRLTIWNPATREFRNLPNYKYCNSSNRLIPPSTFICLESDPINNDFKLLFVHNLWNEKRKRYGKVPNVQVYGFRTNSWREVHGHQLDRYFKVCYWLVIADTRDLKVILSFHMDNEVFEEIKIPPHVNYYSSISLYEDSLSIVIPDAEQCFEIWVMNDNKCWAKHLTLGPFFNFRINFGFWKNDAFFIESNSRIYGGCLFLHEHRTKEIKNLQVTNPQFVVIYKESLMTIQ
Disordered Region (DISEMBL)
IKPQIHDKFVGYHDGLFCIMQSSTNRLTIWNPATREFRNLPNYKYCNSSNRLIPPSTFICLESDPINNDFKLLFVHNLWNEKRKRYGKVPNVQVYGFRTNSWREVHGHQLDRYFKVCYWLVIADTRDLKVILSFHMDNEVFEEIKIPPHVNYYSSISLYEDSLSIVIPDAEQCFEIWVMNDNKCWAKHLTLGPFFNFRINFGFWKNDAFFIESNSRIYGGCLFLHEHRTKEIKNLQVTNPQFVVIYKESLMTIQ
Disordered Region (DISPRO)
IKPQIHDKFVGYHDGLFCIMQSSTNRLTIWNPATREFRNLPNYKYCNSSNRLIPPSTFICLESDPINNDFKLLFVHNLWNEKRKRYGKVPNVQVYGFRTNSWREVHGHQLDRYFKVCYWLVIADTRDLKVILSFHMDNEVFEEIKIPPHVNYYSSISLYEDSLSIVIPDAEQCFEIWVMNDNKCWAKHLTLGPFFNFRINFGFWKNDAFFIESNSRIYGGCLFLHEHRTKEIKNLQVTNPQFVVIYKESLMTIQ
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
IKPQIHDKFVGYHDGLFCIMQSSTNRLTIWNPATREFRNLPNYKYCNSSNRLIPPSTFICLESDPINNDFKLLFVHNLWNEKRKRYGKVPNVQVYGFRTNSWREVHGHQLDRYFKVCYWLVIADTRDLKVILSFHMDNEVFEEIKIPPHVNYYSSISLYEDSLSIVIPDAEQCFEIWVMNDNKCWAKHLTLGPFFNFRINFGFWKNDAFFIESNSRIYGGCLFLHEHRTKEIKNLQVTNPQFVVIYKESLMTIQ
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	254	2.2.26 [Sep-21-2011]
Q9LU24	360	Putative F-box protein At	yes	no	0.622	0.438	0.25	1e-07
Q9T0J4	426	Putative F-box protein At	no	no	0.669	0.399	0.262	1e-07
Q9SJ06	396	F-box protein At2g21930 O	no	no	0.641	0.411	0.268	9e-07
Q3ECE2	369	Putative F-box protein At	no	no	0.606	0.417	0.302	1e-05
Q9LPW4	462	Putative F-box protein At	no	no	0.346	0.190	0.319	2e-05
Q9LUP7	381	Putative F-box protein At	no	no	0.811	0.540	0.225	3e-05
Q9LPW2	416	Putative F-box/kelch-repe	no	no	0.496	0.302	0.253	6e-05
Q9LS58	311	F-box protein At3g18320 O	no	no	0.566	0.463	0.267	0.0002
Q9SS35	389	Putative F-box protein At	no	no	0.653	0.426	0.25	0.0004

>sp|Q9LU24|FB145_ARATH Putative F-box protein At3g16210 OS=Arabidopsis thaliana GN=At3g16210 PE=4 SV=1

 Score = 57.0 bits (136), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 49/196 (25%), Positives = 85/196 (43%), Gaps = 38/196 (19%)

Query: 14  DGLFCIMQSSTNRLTIWNPATREFRNLPNYKYCNSSNRLIPPSTFICLESDPINNDFKLL 73
           DG  C+   + + L +WNP +++F+ +PN      SN        +    DP+++D+K++
Sbjct: 96  DGTLCVTLKN-HTLMVWNPFSKQFKIVPNPGIYQDSN-------ILGFGYDPVHDDYKVV 147

Query: 74  -FVHNLWNEKRKRYGKVPNVQVYGFRTNSW-------------REVHGHQLDRYFKVCYW 119
            F+  L          V    V+ FRT SW             R+  G  LD+Y    YW
Sbjct: 148 TFIDRL---------DVSTAHVFEFRTGSWGESLRISYPDWHYRDRRGTFLDQYL---YW 195

Query: 120 LVIADTRDLKVILSFHMDNEVFEEIKIPPHVNYYSSISLYEDSLSIVIPDAEQC---FEI 176
           +    + D + IL F++    + ++ +P +    +S  L   S  + I + E C     I
Sbjct: 196 IAYRSSAD-RFILCFNLSTHEYRKLPLPVYNQGVTSSWLGVTSQKLCITEYEMCKKEIRI 254

Query: 177 WVMNDNKCWAKHLTLG 192
            VM     W+K ++L 
Sbjct: 255 SVMEKTGSWSKIISLS 270

Arabidopsis thaliana (taxid: 3702)

>sp|Q9T0J4|FB249_ARATH Putative F-box protein At4g38870 OS=Arabidopsis thaliana GN=At4g38870 PE=4 SV=1

 Score = 57.0 bits (136), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 53/202 (26%), Positives = 90/202 (44%), Gaps = 32/202 (15%)

Query: 1   IKPQIHDKFVGYHDGLFCIMQSSTNRLTIWNPATREFRNLPNYKYCNSSNRLIPPSTFIC 60
           I P +H        GL C    S+  L I+NP TR    LP  K   +  R I  + +I 
Sbjct: 154 ISPSVH--------GLICYGPPSS--LVIYNPCTRRSITLPKIK---AGRRAI--NQYIG 198

Query: 61  LESDPINNDFKLLFVHNLWNEKRKRYGKVPNVQVY--GFRTNSWREVH---------GHQ 109
              DP++ ++K++ +       R R G    +QV   G R +SWR +H           +
Sbjct: 199 Y--DPLDGNYKVVCITRGMPMLRNRRGLAEEIQVLTLGTRDSSWRMIHDIIPPHSPVSEE 256

Query: 110 LDRYFKVCYWLVIADTRDLKVILSFHMDNEVFEEIKIPPHVNYYSSISLYEDSLSIVIPD 169
           L     + Y   I    +   I+SF + +E F+ IK+P +   +S ++ YE  L+++  +
Sbjct: 257 LCINGVLYYRAFIGTKLNESAIMSFDVRSEKFDLIKVPCNFRSFSKLAKYEGKLAVIFYE 316

Query: 170 AEQC--FEIWVMND--NKCWAK 187
            +      +W++ D  N  W+K
Sbjct: 317 KKTSGIIGLWILEDASNGEWSK 338

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SJ06|FB115_ARATH F-box protein At2g21930 OS=Arabidopsis thaliana GN=At2g21930 PE=2 SV=1

 Score = 53.9 bits (128), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 51/190 (26%), Positives = 88/190 (46%), Gaps = 27/190 (14%)

Query: 15  GLFC-----IMQSSTNRLTIWNPATREFRNLPNYKYCNSSNRLIPPSTFICLESDPINND 69
           GL C      +  S+ RL + NP+TR    LP     ++++  I    +  +  DPI+ D
Sbjct: 123 GLICHGPPSTLIVSSPRLIVSNPSTRRSIILPKI---DANHECI----YHHMGYDPIDGD 175

Query: 70  FKLLFVHNLWNEKRKRYGKVPNVQVYGFRT-NSWREV---------HGHQLDRYF-KVCY 118
           +K+L +    +  ++RY     +QV+  R  NSWR V         H    D     V Y
Sbjct: 176 YKVLCMMKGMHVYQRRY-LAKELQVFTLRKGNSWRMVEDFPPHCLCHEDTPDLCINGVLY 234

Query: 119 WLVIADTRDLKVILSFHMDNEVFEEIKIPPHVNYYSSISLYEDSLSIVIPDAEQCFEIWV 178
           ++ + DT     ++SF + +E F+ IK  P  +    ++ YE   +++ P ++    +WV
Sbjct: 235 YVAMLDTASNHAVMSFDVRSEKFDLIKGGPDGDLNPKLTRYEGKPALLFPGSDYRINLWV 294

Query: 179 MNDNKCWAKH 188
           + D    AKH
Sbjct: 295 IEDA---AKH 301

Arabidopsis thaliana (taxid: 3702)

>sp|Q3ECE2|FB85_ARATH Putative F-box protein At1g70960 OS=Arabidopsis thaliana GN=At1g70960 PE=4 SV=1

 Score = 50.4 bits (119), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 56/185 (30%), Positives = 85/185 (45%), Gaps = 31/185 (16%)

Query: 15  GLFCIMQSSTNRLTIWNPATREFRNLPNYKYCNSSNRLIPPSTFICLESDPINNDFKLLF 74
           GL C  Q    ++ I NP  ++FR+LP  K    +    P  TF   + D   + FK+L 
Sbjct: 111 GLIC--QQGYGKIVICNPGLKKFRSLPQIKVHKGA----PMRTFFGYDED--KDVFKVLC 162

Query: 75  VHNLWNEKRKRYGKVPNVQVYGF--RTNSWREV-----HGHQLDRYFKVCYWLVIADTRD 127
           +  L N KR    K   V   G    ++SWR +     H    +  FK       A + +
Sbjct: 163 ITWLRNGKRSEVSKEYLVYTMGSDEESSSWRLITCEHDHAPVTEGLFKGGVLYYGAKSNN 222

Query: 128 LK-VILSFHMDNEVFE----EIKIPPH---VNYYSSISLY---EDSLSIVIPDAEQCFEI 176
            K V++SF++++E F     E++I P+   VNY   I+L    EDSL        + FE+
Sbjct: 223 GKSVVMSFNVNSEDFSVIELEVEISPYWRLVNYKGDIALMNNIEDSLY-----HSREFEM 277

Query: 177 WVMND 181
           WV N+
Sbjct: 278 WVRNE 282

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LPW4|FB7_ARATH Putative F-box protein At1g12855 OS=Arabidopsis thaliana GN=At1g12855 PE=4 SV=1

 Score = 49.7 bits (117), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 31/97 (31%), Positives = 48/97 (49%), Gaps = 9/97 (9%)

Query: 14  DGLFCIMQSSTNRLTIWNPATREFRNLPNYKYCNSSNRLIPPS-------TFICLESDPI 66
           DGLFCI    T  + + NPATR FR LP  ++     +L P           +C  +   
Sbjct: 183 DGLFCIHSLKTQAIYVVNPATRWFRQLPPARFQILMQKLYPTQDTWIDIKPVVCYTAFVK 242

Query: 67  NNDFKLLFVHNLWNEKRKRYGKVPNVQVYGFRTNSWR 103
            ND+KL++++N  ++       V   +V+ FR N+WR
Sbjct: 243 ANDYKLVWLYN--SDASNPNLGVTKCEVFDFRANAWR 277

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LUP7|FB154_ARATH Putative F-box protein At3g17500 OS=Arabidopsis thaliana GN=At3g17500 PE=4 SV=1

 Score = 49.3 bits (116), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 54/240 (22%), Positives = 105/240 (43%), Gaps = 34/240 (14%)

Query: 1   IKPQIHDKFVGYHDGLFCIMQSSTNRLTIWNPATREFRNLPNYKYCNSSNRLIPPSTFIC 60
           + PQ+    + + DGL  +  +  +RL +WNP T + R + +  +  +++  +     + 
Sbjct: 88  VGPQMQISGIFHCDGLL-LCTTKDDRLEVWNPCTGQTRRVQHSIHYKTNSEFV-----LG 141

Query: 61  LESDPINNDFKLLFVHNLWNEKRKRYGKVPNVQVYGFRTNSWR---EVHGHQLDR----Y 113
             ++   + +K+L     WN     Y +V   ++Y F ++SWR   EV+ + L       
Sbjct: 142 YVNNNSRHSYKIL---RYWNFYMSNY-RVSEFEIYDFSSDSWRFIDEVNPYCLTEGEVSL 197

Query: 114 FKVCYWLVIADTRDLKVILSFHMDNEVFEEIKIPPHVNYYSSISL---YEDSLSIVIPDA 170
               YWL   + RD+ +IL F    E ++ + +P   + Y + +L    E  LS+++   
Sbjct: 198 KGNTYWLASDEKRDIDLILRFDFSIERYQRLNLPILKSDYETEALSVVREKQLSVLLKRN 257

Query: 171 EQC-FEIWVMNDNK--------CWAKHLTLGPFFNFRINFGFWKNDAFFIESNSRIYGGC 221
           +    EIWV  ++K         W K L +     +      W   +FFI+   ++   C
Sbjct: 258 DTLEREIWVTTNDKIDHTTKNLLWIKFLAIDQRTCYH-----WSCVSFFIDEEKKMAVFC 312

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LPW2|FBK2_ARATH Putative F-box/kelch-repeat protein At1g12870 OS=Arabidopsis thaliana GN=At1g12870 PE=4 SV=2

 Score = 48.1 bits (113), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 38/150 (25%), Positives = 67/150 (44%), Gaps = 24/150 (16%)

Query: 14  DGLFCIMQSSTNRLTIWNPATREFRNLPNYKYCNSSNRLIPPSTFICLESDPINN----- 68
           DG+FCI    T  + + NPATR FR LP  ++    ++L  P+     +  P+N+     
Sbjct: 135 DGIFCIHSPKTQDIYVVNPATRWFRQLPPARFQIFMHKL-NPTLDTLRDMIPVNHLAFVK 193

Query: 69  --DFKLLFVHNLWNEKRKRYGKVPNVQVYGFRTNSWREV---------HGHQLDRYFKVC 117
             D+KL++++N          +V   +V+ F+ N+WR +         H  +        
Sbjct: 194 ATDYKLVWLYN------SDASRVTKCEVFDFKANAWRYLTCIPSYRIYHDQKPASANGTL 247

Query: 118 YWLVIADTRDLKVILSFHMDNEVFEEIKIP 147
           YW       ++KVI +  +  E+F  +  P
Sbjct: 248 YWFTETYNAEIKVI-ALDIHTEIFRLLPKP 276

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LS58|FB158_ARATH F-box protein At3g18320 OS=Arabidopsis thaliana GN=At3g18320 PE=2 SV=1

 Score = 46.6 bits (109), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 47/176 (26%), Positives = 77/176 (43%), Gaps = 32/176 (18%)

Query: 73  LFVHNLWNEKRKRYGKVPNVQVYGFRTNSWREVHG-----HQLDRYFKVC-------YWL 120
           L V N W E   RY +  + ++Y F ++SWR +       H ++ YF+ C       YWL
Sbjct: 80  LEVKNEWIELGDRYNEDKDSEIYEFSSDSWRVIDDIIKPPHYME-YFRKCLSLKGNTYWL 138

Query: 121 VIADTRDLK----VILSFHMDNEVFEEIKIPP----HVNYYSSISLYEDS-LS-IVIPDA 170
            I   R        ++ F    E F  + +PP    H    S +S   D  LS +++ D+
Sbjct: 139 GIDRRRRPPDLRITLIKFDFGTEKFGYVPLPPPCQVHGFEASRLSAVGDEKLSLLLVGDS 198

Query: 171 EQCFEIWVMN-----DNKCWAKHLTLGPFFNFRINFGFWKNDAFFIESNSRIYGGC 221
               E+WV +     +   W+K L+L P    + N GFW   +F ++   ++   C
Sbjct: 199 TSNTELWVTSKIGEANVVSWSKVLSLYP----KPNVGFWHGLSFLLDEEKKVLLCC 250

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SS35|FB137_ARATH Putative F-box protein At3g10240 OS=Arabidopsis thaliana GN=At3g10240 PE=4 SV=1

 Score = 45.1 bits (105), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 48/192 (25%), Positives = 80/192 (41%), Gaps = 26/192 (13%)

Query: 14  DGLFCIMQSSTNRLTIWNPATREFRNLPNYKYCNSSNRLIPPSTFICLESDPINNDFKLL 73
           +GL C  +S+  RL +WNP+TR+   LP  K   +SN L      I L  DP+    K++
Sbjct: 130 NGLICFQESA--RLIVWNPSTRQLLILP--KPNGNSNDLT-----IFLGYDPVEGKHKVM 180

Query: 74  FVHNLWNEKRKRYGKVPNVQVYGFRTNSWREVHGHQLDR--YFK-------VCYWLVIAD 124
            +     E    Y     V   G     WR V  H   R  Y+        V Y +    
Sbjct: 181 CM-----EFSATYDTC-RVLTLGSAQKLWRTVKTHNKHRSDYYDSGRCINGVVYHIAYVK 234

Query: 125 TRDLKVILSFHMDNEVFEEIKIPPHVNYYSSISLYEDSLSIVIPD--AEQCFEIWVMNDN 182
              + V++SF + +E+F+ I++P    +   +  Y   L+ V  +   +    +W++  +
Sbjct: 235 DMCVWVLMSFDVRSEIFDMIELPSSDVHKDVLIDYNGRLACVGREIIEKNGIRLWILEKH 294

Query: 183 KCWAKHLTLGPF 194
             W+    L P 
Sbjct: 295 NKWSSKDFLAPL 306

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	254
224119696	367	predicted protein [Populus trichocarpa]	0.968	0.670	0.272	1e-17
224117590	441	f-box family protein [Populus trichocarp	0.937	0.539	0.300	6e-16
296090345	423	unnamed protein product [Vitis vinifera]	0.905	0.543	0.293	1e-13
224133722	443	predicted protein [Populus trichocarpa]	0.929	0.532	0.260	2e-13
301069172	393	MdFBX17 [Malus x domestica]	0.905	0.585	0.283	9e-13
198400307	393	F-box protein FB1 [Malus x domestica]	0.905	0.585	0.283	2e-12
117939133	416	S locus F-box protein with the low allel	0.787	0.480	0.276	2e-12
316996538	393	hypothetical protein [Pyrus pyrifolia]	0.909	0.587	0.277	3e-12
29420811	428	F-box [Prunus mume]	0.744	0.441	0.264	4e-12
117939137	429	S locus F-box protein with the low allel	0.744	0.440	0.263	1e-11

>gi|224119696|ref|XP_002318137.1| predicted protein [Populus trichocarpa] gi|222858810|gb|EEE96357.1| predicted protein [Populus trichocarpa]

 Score = 96.3 bits (238), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 74/272 (27%), Positives = 132/272 (48%), Gaps = 26/272 (9%)

Query: 1   IKPQIHDKFVGYHDGLFCIMQSSTNRLTIWNPATREFRNLPNYKYCNSSNRLIPPSTFIC 60
           + P I  +  G  +G+F +    ++   +WNPAT+EF+ LP  K  N S+  +       
Sbjct: 88  LDPPIRGRLCGPCNGIFYVDSEDSSGSGLWNPATKEFKLLPE-KIRNKSSLPLYYEDSYG 146

Query: 61  LESDPINNDFKLLFVHNLWNEKRKRY-GKVPN--VQVYGFRTNSWR---------EVHGH 108
              DP+ ND+K++ +   +   R+ Y  K P+  V VY  RT+SWR          + G+
Sbjct: 147 FGFDPVTNDYKVVVIRESYT--REYYLEKFPSSLVIVYTLRTDSWRCWGSLDQGYTLLGN 204

Query: 109 QLDRYFKVCYWLVIADTRDLKVILSFHMDNEVFEEIKIPPHVN--YYSSISLYEDSLSI- 165
                    Y+        + VILSF+M  + F+EI+ P +    Y + + LY DS++  
Sbjct: 205 YCYTNVDGVYYWQAGHGVHMNVILSFNMATDAFQEIQEPDYDKPAYSTRLILYHDSIAFS 264

Query: 166 VIPDAEQCFEIWVMNDNKCWAKHLTLGPFFNFRINFGFWKNDAFFIESNSRIYGGCLFLH 225
            + + E+  +IWV+N+  CW +     P    R     WKN    ++S++      L L+
Sbjct: 265 TVHNVEKFLDIWVLNEG-CWIRQFKSRPLLELRNPVAHWKNGNVILDSDNDQ----LMLY 319

Query: 226 EHRTKEIKNLQVTNPQF---VVIYKESLMTIQ 254
           +   +E+K+L+         +++Y+ESL++I+
Sbjct: 320 DTNKQELKDLRFKGTGVCYEILVYRESLVSIK 351

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224117590|ref|XP_002331674.1| f-box family protein [Populus trichocarpa] gi|222874093|gb|EEF11224.1| f-box family protein [Populus trichocarpa]

 Score = 90.5 bits (223), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 82/273 (30%), Positives = 128/273 (46%), Gaps = 35/273 (12%)

Query: 6   HDKFV-GYHDGLFCIMQSSTNRLTIWNPATREFRNLPNYKYCNSSNRLIPPSTFICLESD 64
           H  F+ G  DG+F + +   +    WNPA  EF+ LP      S+    P          
Sbjct: 133 HSPFLCGPCDGIFYMYRDYYDFRAFWNPAVNEFKFLPPLPNPPSNFSYSPQYDAYGFGLH 192

Query: 65  PINNDFKLLFVHNLWNEKRKRYG--KVP-NVQVYGFRTNSWREVHGHQLDRYFKV----C 117
           P+  D++++ + + W EK++  G  + P  V VY   T SWR  H   L RY+ +    C
Sbjct: 193 PVTKDYEVVVMKDYWREKQEERGGCRYPLRVFVYSSSTGSWR--HWGDLSRYYYLQNNKC 250

Query: 118 Y--------WL----VIADTRDLKVILSFHMDNEVFEEIKIPPHVNYYSS--ISLYEDSL 163
           Y        WL    +  D    KVI+SF M  E  +EI++P     ++   ++ Y+DSL
Sbjct: 251 YICMNGVFFWLGSYEIFGDPE--KVIISFDMATETCQEIQLPDCGKSHNCQCLATYQDSL 308

Query: 164 SIVIPDAEQCFEIWVMNDNKCWAKHLTLGPFFNFRINFGFWKNDAFFIESNSRIYGGCLF 223
           +I +   E+   +W +N+ +CW K+ ++GP        G WKN    + S+S    G L 
Sbjct: 309 AI-LDVHEKFLHMWTLNE-RCWVKNFSIGPLPEISYPIGHWKNSKLILVSDS----GELI 362

Query: 224 LHEHRTKEIKNLQVT---NPQFVVIYKESLMTI 253
           L +  T+EI  L +T       V  YKESL+ +
Sbjct: 363 LCDPSTQEISGLGLTRWVRCVGVFAYKESLVLV 395

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|296090345|emb|CBI40164.3| unnamed protein product [Vitis vinifera]

 Score = 82.8 bits (203), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 81/276 (29%), Positives = 127/276 (46%), Gaps = 46/276 (16%)

Query: 8   KFVGYHDGLFCIMQSS------TNRLTIWNPATREFRNLPNYKYCNSSNRLIPPSTFICL 61
           + VG  +GL C+ +S+      +  L +WNPA REF+ LP Y   N ++ L+        
Sbjct: 111 QIVGSSNGLICLTESNFKGSYLSLNLFLWNPAIREFQTLPKYHINNFTSPLMVVGLGFAF 170

Query: 62  ESDPINNDFKLL-FVHNLWNEKRKRYGKVPNVQVYGFRTNSWREVHGH-------QLDRY 113
              P+ ND+K++  V+ + N       K     VY  RT SWR+V  +        + R 
Sbjct: 171 H--PVINDYKVVRIVYFMRN-------KTSEADVYSLRTGSWRKVDANICCYIHSNVSRT 221

Query: 114 F--KVCYWLVIA----DTRDLKVILSFHMDNEVFEEIKIPPHVNY----YSSISLYEDSL 163
           F     +WL       D  D  +ILSF M  +VF+EI + P   Y       ++ Y+ SL
Sbjct: 222 FINGALHWLAGKKNEMDNTD-NLILSFDMAKDVFKEIML-PDFGYDELIRKCLADYKGSL 279

Query: 164 SIVIPDA----EQCFEIWVMND---NKCWAKHLTLGPFFNFRINFGFWKNDAFFIESNSR 216
           S++  DA    E C ++WVM +    K W KH T+       I F F+ N    ++    
Sbjct: 280 SVLFYDAYHSNENC-DVWVMEEYGVAKSWTKHFTIRHEIEIIIPFEFFDNGEAILQKKKS 338

Query: 217 IYGGCLFLHEHRTKEIKNLQVTNPQFVVIYKESLMT 252
             GG +  +    +  ++L V+ P  +V Y ESL++
Sbjct: 339 --GGFISWNPDGIR-FRDLGVSGPARLVEYMESLVS 371

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224133722|ref|XP_002327664.1| predicted protein [Populus trichocarpa] gi|222836749|gb|EEE75142.1| predicted protein [Populus trichocarpa]

 Score = 82.4 bits (202), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 69/265 (26%), Positives = 118/265 (44%), Gaps = 29/265 (10%)

Query: 11  GYHDGLFCIMQSSTNRLTIWNPATREFRNLPNYKYCNSSNRLIPPSTFICLESDPINNDF 70
           G  DG+F +     +   +WNPA  E + LP       S    P          P+  D 
Sbjct: 142 GPCDGIFYLYGHFYDFHALWNPAINELKTLPPIPNPPFSFSYSPLWNAYGFRLHPVTKDC 201

Query: 71  KLLFVHNLWNEKRKRY-GKVP-NVQVYGFRTNSWREVHGHQLDRYF------------KV 116
           +++ +   W E+   +  + P +V VY   ++SWR  +   L RY+             V
Sbjct: 202 EVIVMREYWREEEGAWEDRYPLSVFVYTLSSDSWR--YWGDLSRYYHLRNNKCYICVEGV 259

Query: 117 CYWL-VIADTRDLKVILSFHMDNEVFEEIKIPPHVNYYSSISL--YEDSLSIVIPDAEQC 173
            YWL       D +V+++F M   V +EI++P +    +S SL  Y DS+++++   E  
Sbjct: 260 FYWLGSYGACGDPEVVINFDMATNVCQEIQLPDYDKSINSESLAVYNDSIALLVVQ-ESV 318

Query: 174 FEIWVMNDNKCWAKHLTLGPFFNFRINFGFWKNDAFFIESNSRIYGGCLFLHEHRTKEIK 233
             +W + D +CW K   +GP    +   G W+N+   + S+S      L L + RT+E+ 
Sbjct: 319 LHVWTL-DERCWTKKFVVGPLLGVQYPVGHWQNNTIILISDSYE----LLLCDPRTQEMS 373

Query: 234 NLQVTNP----QFVVIYKESLMTIQ 254
            L         + +  YKESL+ ++
Sbjct: 374 GLGFEGGTIRCEGIFAYKESLVPVK 398

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|301069172|dbj|BAJ11965.1| MdFBX17 [Malus x domestica]

 Score = 80.1 bits (196), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 84/296 (28%), Positives = 134/296 (45%), Gaps = 66/296 (22%)

Query: 4   QIHDKFVGYHDGLFCIMQSSTNRLTIWNPATREFRNLPNYKYCNSSNRLIP-PSTFICLE 62
           QIH    GY +G+ C+++   + + + NP+TREFR LPN      S  L+P P     LE
Sbjct: 119 QIH----GYCNGIVCLIEG--DNVLLCNPSTREFRLLPN------SCLLVPHPEGKFELE 166

Query: 63  S---------DPINNDFKLL-FVHNL-WNEKRKRYGKVP----NVQVYGFRTNSWREV-- 105
           +         D   N++K++  V N  +++  + Y          +VY    N W+E+  
Sbjct: 167 TTFHGMGFGYDCKANEYKVVQIVENCEYSDDEQTYQHCIAYPYTAEVYTTAANFWKEIKI 226

Query: 106 ------HGHQLDRYFK-VCYWLVIADTRDLKVILSFHMDNEVFEEIKIPPHVNY---YSS 155
                 H +    Y K  CYW     T   + ILSF + +E+F  I++P  +     +  
Sbjct: 227 DISSSTHPYPFSVYLKGFCYWFA---TDGEECILSFDLGDEIFHRIQLPSKIESGFNFCG 283

Query: 156 ISLYEDSLSIVI-----PDAEQCFEIWVMND----NKCWAKHLTLGPFFNFRINFGFWK- 205
           + LY +S++         +  + FEIWVM+        W K LT+GPF        FWK 
Sbjct: 284 LFLYNESITSYCCRYDPSEDSKLFEIWVMDGYGGVKNSWTKLLTVGPFKGIEYPLTFWKC 343

Query: 206 NDAFFIESNSRIYGGCLFLHEHRTKEIKNL-------QVTNPQFVVIYKESLMTIQ 254
           N+   + S+ R+       +   T  +K+L       QVT+ Q   IY+ESL+ I+
Sbjct: 344 NELLMVASSRRVTS-----YNSSTGNLKDLHIPPIIHQVTDLQ-AFIYEESLIPIK 393

Source: Malus x domestica

Species: Malus x domestica

Genus: Malus

Family: Rosaceae

Order: Rosales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|198400307|gb|ACH87163.1| F-box protein FB1 [Malus x domestica]

 Score = 79.3 bits (194), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 84/296 (28%), Positives = 133/296 (44%), Gaps = 66/296 (22%)

Query: 4   QIHDKFVGYHDGLFCIMQSSTNRLTIWNPATREFRNLPNYKYCNSSNRLIP-PSTFICLE 62
           QIH    GY +G+ C+++   + + + NP+TREFR LPN      S  L+P P     LE
Sbjct: 119 QIH----GYCNGIVCLIEG--DNVLLCNPSTREFRLLPN------SCLLVPHPEGKFELE 166

Query: 63  S---------DPINNDFKLL-FVHNL-WNEKRKRYGKVP----NVQVYGFRTNSWREV-- 105
           +         D   N++K++  V N  +++  + Y          +VY    N W+E+  
Sbjct: 167 TTFHGMGFGYDCKANEYKVVQIVENCEYSDDEQTYQHCIAYPYTAEVYTTAANFWKEIKI 226

Query: 106 ------HGHQLDRYFK-VCYWLVIADTRDLKVILSFHMDNEVFEEIKIPPHVNY---YSS 155
                 H +    Y K  CYW     T   + ILSF + +E+F  I++P  +     +  
Sbjct: 227 DISSSTHPYPFSVYLKGFCYWFA---TDGEECILSFDLGDEIFHRIQLPSKIESGFNFCG 283

Query: 156 ISLYEDSLSIVI-----PDAEQCFEIWVMND----NKCWAKHLTLGPFFNFRINFGFWK- 205
             LY +S++         +  + FEIWVM+        W K LT+GPF        FWK 
Sbjct: 284 FFLYNESITSYCCRYDPSEDSKLFEIWVMDGYGGVKNSWTKLLTVGPFKGIEYPLTFWKC 343

Query: 206 NDAFFIESNSRIYGGCLFLHEHRTKEIKNL-------QVTNPQFVVIYKESLMTIQ 254
           N+   + S+ R+       +   T  +K+L       QVT+ Q   IY+ESL+ I+
Sbjct: 344 NELLMVASSRRVTS-----YNSSTGNLKDLHIPPIIHQVTDLQ-AFIYEESLIPIK 393

Source: Malus x domestica

Species: Malus x domestica

Genus: Malus

Family: Rosaceae

Order: Rosales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|117939133|dbj|BAF36715.1| S locus F-box protein with the low allelic sequence polymorphism 3-S4 [Prunus avium]

 Score = 79.0 bits (193), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 69/250 (27%), Positives = 108/250 (43%), Gaps = 50/250 (20%)

Query: 10  VGYHDGLFCIMQSSTNRLTIWNPATREFRNLPNYKYCNSSNRLIPPSTFICLESDPINND 69
           VG+ DGLFC +   T  L  +NPA +EFR LP     N+       S  +    DP   D
Sbjct: 133 VGHCDGLFC-LSLYTGELVFYNPAIKEFRVLPQSCLENAF------SCTLGFGYDPKRKD 185

Query: 70  FKLLFVHNLWNE---KRKRYGKVPNVQVYGFRTNSWREVHGHQLDR-------------Y 113
           + LL V +   E     +     P  ++Y   TNSWR +  H L+              Y
Sbjct: 186 YILLSVVSYGEEILDDERLVIHPPQAEIYTLSTNSWRGIETHYLETETTYFWGNETFSTY 245

Query: 114 FK-VCYWLVIADTRDL------------KVILSFHMDNEVFEEIKIPPHVNYYSSISLYE 160
           F  V YWL   + +D             +VI+ F   +EVF  + +P   + +     +E
Sbjct: 246 FNGVFYWLGYEEKKDFVSFYDRLEEEKTQVIILFDTFDEVFHNMPLP---DCFYEFPTHE 302

Query: 161 DSL-----SIVIPDAEQC----FEIWVMNDNKCWAKHLTLGPFFNFRIN--FGFWKNDAF 209
            SL     SI +    +C    FE+WVM++   W KHL++ P  +  ++     W+N+  
Sbjct: 303 MSLTVWNESIALFGFYRCEFETFEVWVMDEFDGWTKHLSVVPKVDQEVDIPLALWRNEVL 362

Query: 210 FIESNSRIYG 219
            ++ + RI+ 
Sbjct: 363 LVDRDGRIFS 372

Source: Prunus avium

Species: Prunus avium

Genus: Prunus

Family: Rosaceae

Order: Rosales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|316996538|dbj|BAJ52228.1| hypothetical protein [Pyrus pyrifolia]

 Score = 78.2 bits (191), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 82/295 (27%), Positives = 131/295 (44%), Gaps = 64/295 (21%)

Query: 4   QIHDKFVGYHDGLFCIMQSSTNRLTIWNPATREFRNLPNYKYCNSSNRLIP-PSTFICLE 62
           QIH    GY +G+ C+++   + + + NP+TREFR LPN      S  L+P P     LE
Sbjct: 119 QIH----GYCNGIVCLIEG--DNVLLCNPSTREFRLLPN------SCLLVPHPEGKFELE 166

Query: 63  S---------DPINNDFKLL-FVHNL-WNEKRKRYGKVP----NVQVYGFRTNSWREV-- 105
           +         D   N++K++  V N  +++  + Y          +VY    N W+E+  
Sbjct: 167 TTFHGMGFGYDCKANEYKVVQIVENCEYSDDEQTYQHCIAYPYTAEVYTTAANFWKEIKI 226

Query: 106 ------HGHQLDRYFK-VCYWLVIADTRDLKVILSFHMDNEVFEEIKIPPHVNY---YSS 155
                 H +    Y K  CYW     T   + ILSF + +E+F  I++P  +     +  
Sbjct: 227 DISSSTHPYPFSVYLKGFCYWFA---TDGEECILSFDLGDEIFHRIQLPSKIESGFNFCG 283

Query: 156 ISLYEDSLSIVI-----PDAEQCFEIWVMND----NKCWAKHLTLGPFFNFRINFGFWKN 206
           + LY +S++         +  + FEIWVM+        W K LT+GPF         WK 
Sbjct: 284 LFLYNESITSYCYRYDPSEDSKLFEIWVMDGYGGVKSSWTKLLTVGPFKGIEYPLTLWKC 343

Query: 207 DAFFIESNSRIYGGCLFLHEHRTKEIKNL-------QVTNPQFVVIYKESLMTIQ 254
           D   + ++ R        +   T   K+L       QVT+ Q  +IY+ESL+ I+
Sbjct: 344 DKLLMVASGRRVTS----YNSSTGNFKDLHIPPIMHQVTDLQ-ALIYEESLVPIK 393

Source: Pyrus pyrifolia

Species: Pyrus pyrifolia

Genus: Pyrus

Family: Rosaceae

Order: Rosales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|29420811|dbj|BAC66627.1| F-box [Prunus mume]

 Score = 77.8 bits (190), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 67/253 (26%), Positives = 110/253 (43%), Gaps = 64/253 (25%)

Query: 11  GYHDGLFCIMQSSTNRLTIWNPATREFRNLPNYKYCNSSNRLIPPST------------- 57
           G  DGL C+   ++  + + NPA  E+R LP  K C     L+PP               
Sbjct: 136 GSCDGLICLNTFNSEDIVLCNPALEEYRVLP--KSC----ILLPPRVPRQFEENEDDDYY 189

Query: 58  -------------FICLESDPINNDFKLL----FVHNLWNEKRKRYGKVPNVQVYGFRTN 100
                         +    DP + D+K++    FV  ++ +   +      V+VY    +
Sbjct: 190 EEDDDDEIESNPKCVGFGYDPNSKDYKVVRAAQFVSGVFTQHPSK------VEVYSLAAD 243

Query: 101 SWREV------HGH---QLDRYFKVCYWLVIADTRDLKVILSFHMDNEVFEEIKIP---P 148
           +WREV      HG        YFK  ++ +   T +  VILSF M  EVF +I +P   P
Sbjct: 244 TWREVPVDIQPHGSLNPSYQMYFKGFFYWIAYWTEERNVILSFDMSEEVFHDIALPESGP 303

Query: 149 HVNYYSSISLYEDSLSI----VIPDAEQCFEIWVMNDN-----KCWAKHLTLGPF-FNFR 198
               Y+SI++++DSL++    V  +A +  ++WV++++       W KHL +GP      
Sbjct: 304 DAYEYTSIAVWKDSLALLTYPVENEAPKTLDLWVLDEDLKGAKGLWTKHLAIGPLEKGVE 363

Query: 199 INFGFWKNDAFFI 211
               FWK+    +
Sbjct: 364 APLVFWKDKELLM 376

Source: Prunus mume

Species: Prunus mume

Genus: Prunus

Family: Rosaceae

Order: Rosales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|117939137|dbj|BAF36717.1| S locus F-box protein with the low allelic sequence polymorphism 2-Sf [Prunus mume]

 Score = 76.6 bits (187), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 67/254 (26%), Positives = 110/254 (43%), Gaps = 65/254 (25%)

Query: 11  GYHDGLFCIMQSSTNRLTIWNPATREFRNLPNYKYCNSSNRLIPPST------------- 57
           G  DGL C+   ++  + + NPA  E+R LP  K C     L+PP               
Sbjct: 136 GSCDGLICLNTFNSEDIVLCNPALEEYRVLP--KSC----ILLPPRVPRQFEENEDDDYY 189

Query: 58  -------------FICLESDPINNDFKLL----FVHNLWNEKRKRYGKVPNVQVYGFRTN 100
                         +    DP + D+K++    FV  ++ +   +      V+VY    +
Sbjct: 190 EEDEDDEIESNPKCVGFGYDPNSKDYKVVRAAQFVSGVFTQHPSK------VEVYSLAAD 243

Query: 101 SWREV------HGH---QLDRYFKVCYWLVIADTRDLKVILSFHMDNEVFEEIKIP---P 148
           +WREV      HG        YFK  ++ +   T +  VILSF M  EVF +I +P   P
Sbjct: 244 TWREVPVDIQPHGSLNPSYQMYFKGFFYWIAYWTEERNVILSFDMSEEVFHDIALPESGP 303

Query: 149 HVNYYSSISLYEDSLSI----VIPDAEQCFEIWVMNDN------KCWAKHLTLGPF-FNF 197
               Y+SI++++DSL +    V  +A +  ++WV++++        W KHL +GP     
Sbjct: 304 DAYEYTSIAVWKDSLVLLTYPVENEAPKTLDLWVLDEDLKGATKGLWKKHLAIGPLEKGV 363

Query: 198 RINFGFWKNDAFFI 211
                FWK++   +
Sbjct: 364 EAPLVFWKDEELLM 377

Source: Prunus mume

Species: Prunus mume

Genus: Prunus

Family: Rosaceae

Order: Rosales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	254
TAIR|locus:2141801	426	AT4G38870 "AT4G38870" [Arabido	0.645	0.384	0.271	2.2e-07
TAIR|locus:2094947	360	AT3G16210 "AT3G16210" [Arabido	0.618	0.436	0.251	1e-06
TAIR|locus:2013915	369	AT1G70960 "AT1G70960" [Arabido	0.614	0.422	0.295	1.4e-06
TAIR|locus:2090507	388	AT3G17490 "AT3G17490" [Arabido	0.807	0.528	0.266	6e-06
TAIR|locus:2060126	442	AT2G07140 "AT2G07140" [Arabido	0.744	0.427	0.242	1.7e-05
TAIR|locus:2081388	384	AT3G44120 "AT3G44120" [Arabido	0.744	0.492	0.242	3.9e-05
TAIR|locus:2010316	416	AT1G12870 "AT1G12870" [Arabido	0.665	0.406	0.247	4.4e-05
TAIR|locus:2077903	369	AT3G08750 "AT3G08750" [Arabido	0.661	0.455	0.247	6.1e-05
TAIR|locus:2013995	402	AT1G70970 "AT1G70970" [Arabido	0.736	0.465	0.245	0.0002
TAIR|locus:2076309	389	AT3G10240 "AT3G10240" [Arabido	0.649	0.424	0.251	0.00033

TAIR|locus:2141801 AT4G38870 "AT4G38870" [Arabidopsis thaliana (taxid:3702)]

 Score = 143 (55.4 bits), Expect = 2.2e-07, P = 2.2e-07
 Identities = 51/188 (27%), Positives = 88/188 (46%)

Query:    15 GLFCIMQSSTNRLTIWNPATREFRNLPNYKYCNSSNRLIPPSTFICLESDPINNDFKLLF 74
             GL C    S+  L I+NP TR    LP  K   +  R I  + +I    DP++ ++K++ 
Sbjct:   160 GLICYGPPSS--LVIYNPCTRRSITLPKIK---AGRRAI--NQYIGY--DPLDGNYKVVC 210

Query:    75 VHNLWNEKRKRYGKVPNVQVY--GFRTNSWREVHG----HQ-LDRYF---KVCYWLVIAD 124
             +       R R G    +QV   G R +SWR +H     H  +        V Y+     
Sbjct:   211 ITRGMPMLRNRRGLAEEIQVLTLGTRDSSWRMIHDIIPPHSPVSEELCINGVLYYRAFIG 270

Query:   125 TR-DLKVILSFHMDNEVFEEIKIPPHVNYYSSISLYEDSLSIVIPDAEQC--FEIWVMND 181
             T+ +   I+SF + +E F+ IK+P +   +S ++ YE  L+++  + +      +W++ D
Sbjct:   271 TKLNESAIMSFDVRSEKFDLIKVPCNFRSFSKLAKYEGKLAVIFYEKKTSGIIGLWILED 330

Query:   182 --NKCWAK 187
               N  W+K
Sbjct:   331 ASNGEWSK 338

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2094947 AT3G16210 "AT3G16210" [Arabidopsis thaliana (taxid:3702)]

 Score = 136 (52.9 bits), Expect = 1.0e-06, P = 1.0e-06
 Identities = 49/195 (25%), Positives = 85/195 (43%)

Query:    14 DGLFCIMQSSTNRLTIWNPATREFRNLPNYKYCNSSNRLIPPSTFICLESDPINNDFKLL 73
             DG  C+   + + L +WNP +++F+ +PN      SN        +    DP+++D+K++
Sbjct:    96 DGTLCVTLKN-HTLMVWNPFSKQFKIVPNPGIYQDSN-------ILGFGYDPVHDDYKVV 147

Query:    74 -FVHNLWNEKRKRYGKVPNVQVYGFRTNSW-------------REVHGHQLDRYFKVCYW 119
              F+  L          V    V+ FRT SW             R+  G  LD+Y    YW
Sbjct:   148 TFIDRL---------DVSTAHVFEFRTGSWGESLRISYPDWHYRDRRGTFLDQYL---YW 195

Query:   120 LVIADTRDLKVILSFHMDNEVFEEIKIPPHVNYYSSISLYEDSLSIVIPDAEQC---FEI 176
             +    + D + IL F++    + ++ +P +    +S  L   S  + I + E C     I
Sbjct:   196 IAYRSSAD-RFILCFNLSTHEYRKLPLPVYNQGVTSSWLGVTSQKLCITEYEMCKKEIRI 254

Query:   177 WVMNDNKCWAKHLTL 191
              VM     W+K ++L
Sbjct:   255 SVMEKTGSWSKIISL 269

GO:0003674 "molecular_function" evidence=ND

GO:0005737 "cytoplasm" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2013915 AT1G70960 "AT1G70960" [Arabidopsis thaliana (taxid:3702)]

 Score = 135 (52.6 bits), Expect = 1.4e-06, P = 1.4e-06
 Identities = 54/183 (29%), Positives = 85/183 (46%)

Query:    15 GLFCIMQSSTNRLTIWNPATREFRNLPNYKYCNSSNRLIPPSTFICLESDPINNDFKLLF 74
             GL C  Q    ++ I NP  ++FR+LP  K    +    P  TF   + D   + FK+L 
Sbjct:   111 GLIC--QQGYGKIVICNPGLKKFRSLPQIKVHKGA----PMRTFFGYDED--KDVFKVLC 162

Query:    75 VHNLWNEKRKRYGKVPNVQVYGF--RTNSWREV---HGHQ--LDRYFK--VCYWLVIADT 125
             +  L N KR    K   V   G    ++SWR +   H H    +  FK  V Y+   ++ 
Sbjct:   163 ITWLRNGKRSEVSKEYLVYTMGSDEESSSWRLITCEHDHAPVTEGLFKGGVLYYGAKSNN 222

Query:   126 RDLKVILSFHMDNEVFE----EIKIPPH---VNYYSSISLYEDSLSIVIPDAEQCFEIWV 178
                 V++SF++++E F     E++I P+   VNY   I+L  +    +    E  FE+WV
Sbjct:   223 GK-SVVMSFNVNSEDFSVIELEVEISPYWRLVNYKGDIALMNNIEDSLYHSRE--FEMWV 279

Query:   179 MND 181
              N+
Sbjct:   280 RNE 282

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2090507 AT3G17490 "AT3G17490" [Arabidopsis thaliana (taxid:3702)]

 Score = 130 (50.8 bits), Expect = 6.0e-06, P = 6.0e-06
 Identities = 65/244 (26%), Positives = 108/244 (44%)

Query:    14 DGLFCIMQSSTNRLTIWNPATREFRNLP--NYKYCNSSNRLIPPSTFICLESDPINNDFK 71
             DGL         RL +WNP T + R +   N + C++       S   CL      N++K
Sbjct:   108 DGLILCSTKRNTRLVVWNPCTGQTRWIKRRNRRMCDTFAFGYDNSKSSCL------NNYK 161

Query:    72 LLFVHNLWNEKRKRYGKVPNVQVYGFRTNSWR--EVHGHQL--DRYFKV---CYWLVIAD 124
             +L V     EK K  G+    +++ F +NSWR  +V+ + +   R   V    YW     
Sbjct:   162 ILRVC----EKIK--GQQFEYEIFEFSSNSWRVLDVNPNCIIEGRSVSVKGNSYWFATI- 214

Query:   125 TRDLKVILSFHMDNEVFEEIKIPPHVNYYS---SISLY-EDSLSIVIP--DAEQCFEIWV 178
             T+    I  F   +E F+++ +P H+  Y+   ++S + E+ LS++    D E+  +IWV
Sbjct:   215 TKTHYFIRRFDFSSETFQKLPLPFHIFDYNDSRALSAFREEQLSVLHQSFDTEK-MDIWV 273

Query:   179 MN--DNKC---WAKHLTLGPF--FNFRINFGFWKNDAFFIESNSRIYGGCLFLHEHRTKE 231
              N  D      W+K  T+      ++ I+       +FFI+    I    L   +HR   
Sbjct:   274 TNKIDETTDWSWSKFFTVRLINRLDYPISMMMKSPLSFFIDEKKNII---LCYDKHRENT 330

Query:   232 IKNL 235
              K+L
Sbjct:   331 YKSL 334

GO:0003674 "molecular_function" evidence=ND

GO:0005737 "cytoplasm" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2060126 AT2G07140 "AT2G07140" [Arabidopsis thaliana (taxid:3702)]

 Score = 127 (49.8 bits), Expect = 1.7e-05, P = 1.7e-05
 Identities = 58/239 (24%), Positives = 102/239 (42%)

Query:    12 YH-DGLFCIMQSSTNRLTIWNPATREFRNLPNYKYCNSSNRLIPPSTFIC-LESDPINND 69
             +H DGL        +R  +WNP T         K+    +R      FI   ++   N  
Sbjct:   106 FHCDGLLLCTSQKDSRFVVWNPLTGVT------KWIELGDRYNEGMAFILGYDNKSCNKS 159

Query:    70 FKLLFVHNLWNEKRKRYGKVPNVQVYGFRTNSWREVHG-----HQLDRYFKVC------- 117
             +K +  + L  +K        + ++Y F ++SWR +       H +D YF+ C       
Sbjct:   160 YKAMSFNYL--DK--------DSEIYEFSSDSWRVIDDIIKPPHYMD-YFRECFSLKGNT 208

Query:   118 YWLVIADTR---DLKV-ILSFHMDNEVFEEIKIPPHVNYY----SSISLYEDS-LSIVIP 168
             YWL I   R   DL++ ++ F    E F  + +PP    +    S++S+  D  LS+++ 
Sbjct:   209 YWLGIDRRRRPPDLRITLIKFDFGTEKFGYVSLPPPCQVHGFEASNLSVVGDEKLSVLVQ 268

Query:   169 DAEQC-FEIWVMND----NKC-WAKHLTLGPFFNFRINFGFWKNDAFFIESNSRIYGGC 221
                    E+WV +     N   W+K L+L P    + + GFW   +F ++   +++  C
Sbjct:   269 AGSTSKTEVWVTSKIGEANVVSWSKVLSLYP----KPDVGFWHGLSFLLDEEKKVFLCC 323

GO:0003674 "molecular_function" evidence=ND

GO:0005737 "cytoplasm" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2081388 AT3G44120 "AT3G44120" [Arabidopsis thaliana (taxid:3702)]

 Score = 123 (48.4 bits), Expect = 3.9e-05, P = 3.9e-05
 Identities = 58/239 (24%), Positives = 101/239 (42%)

Query:    12 YH-DGLFCIMQSSTNRLTIWNPATREFRNLPNYKYCNSSNRLIPPSTFIC-LESDPINND 69
             +H DGL        +R  +WNP T         K+    +R      FI   ++   N  
Sbjct:   106 FHCDGLLLCTSQKDSRFVVWNPLTGVT------KWIELGDRYNEGMAFILGYDNKSCNKS 159

Query:    70 FKLLFVHNLWNEKRKRYGKVPNVQVYGFRTNSWREVHG-----HQLDRYFKVC------- 117
             +K +  + L  +K        + ++Y F ++SWR +       H +D YF+ C       
Sbjct:   160 YKAMSFNYL--DK--------DSEIYEFSSDSWRVIDDIIKPPHYMD-YFRECFSLKGNT 208

Query:   118 YWLVIADTR---DLKV-ILSFHMDNEVFEEIKIPPHVNYY----SSISLYEDS-LSIVIP 168
             YWL I   R   DL++ ++ F    E F  + +PP    +    S++S+  D  LS+++ 
Sbjct:   209 YWLGIDRRRRPPDLRITLIKFDFGTERFGYVSLPPPCQVHGFEASNLSVVGDEKLSVLVQ 268

Query:   169 DAEQC-FEIWVMND----NKC-WAKHLTLGPFFNFRINFGFWKNDAFFIESNSRIYGGC 221
                    E+WV +     N   W+K L+L P    + + GFW   +F ++   ++   C
Sbjct:   269 GGSTSKTEVWVTSKIGEANVVSWSKVLSLYP----KPDVGFWHGLSFLLDEEKKVVLCC 323

GO:0003674 "molecular_function" evidence=ND

GO:0005737 "cytoplasm" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2010316 AT1G12870 "AT1G12870" [Arabidopsis thaliana (taxid:3702)]

 Score = 123 (48.4 bits), Expect = 4.4e-05, P = 4.4e-05
 Identities = 50/202 (24%), Positives = 89/202 (44%)

Query:    14 DGLFCIMQSSTNRLTIWNPATREFRNLPNYKYCNSSNRLIPPSTFICLESDPINN----- 68
             DG+FCI    T  + + NPATR FR LP  ++    ++L P    +  +  P+N+     
Sbjct:   135 DGIFCIHSPKTQDIYVVNPATRWFRQLPPARFQIFMHKLNPTLDTL-RDMIPVNHLAFVK 193

Query:    69 --DFKLLFVHNLWNEKRKRYGKVPNVQVYGFRTNSWREV---------HGHQLDRYFKVC 117
               D+KL++   L+N    R   V   +V+ F+ N+WR +         H  +        
Sbjct:   194 ATDYKLVW---LYNSDASR---VTKCEVFDFKANAWRYLTCIPSYRIYHDQKPASANGTL 247

Query:   118 YWLVIADTRDLKVI-LSFHMDNEVFEEIKIPPHVNY----YSSISLYEDSLSIVIPDAEQ 172
             YW       ++KVI L  H   E+F  +  P  +      +  + + ++SL +   + ++
Sbjct:   248 YWFTETYNAEIKVIALDIH--TEIFRLLPKPSLIASSEPSHIDMCIIDNSLCMYETEGDK 305

Query:   173 CF--EIWVMNDNK-CWAKHLTL 191
                 EIW +  ++  W K  T+
Sbjct:   306 KIIQEIWRLKSSEDAWEKIYTI 327

GO:0003674 "molecular_function" evidence=ND

GO:0005737 "cytoplasm" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0005774 "vacuolar membrane" evidence=IDA

TAIR|locus:2077903 AT3G08750 "AT3G08750" [Arabidopsis thaliana (taxid:3702)]

 Score = 121 (47.7 bits), Expect = 6.1e-05, P = 6.1e-05
 Identities = 49/198 (24%), Positives = 89/198 (44%)

Query:    14 DGLF-CIMQSSTNRLTIWNPATREFRNL-PNYKYCNSSNRLIPPSTFICLESDPINNDFK 71
             DGL  C  +   N L +WNP  RE + + P+  Y ++          I  + +   +++K
Sbjct:    99 DGLMLCTCRKWDNSLAVWNPVLREIKWIKPSVCYLHTDY------VGIGYDDNVSRDNYK 152

Query:    72 LLFVHNLWNEKRKRYGKVPNVQVYGFRTNSWREVHGHQLDRYFKV-C----------YWL 120
             +L    L     K     PN ++Y F+++SW+ +   + D    + C          YW 
Sbjct:   153 IL---KLLGRLPKDDDSDPNCEIYEFKSDSWKTLVA-KFDWDIDIRCNNGVSVKGKMYW- 207

Query:   121 VIADTRDLKVILSFHMDNEVFEEIKIPPHVNYYSSISLYE-DSLSIVIPDAE-QCFEIWV 178
              IA  ++   I+ F    E F+EI + P+    + +  ++ D LS+++   E Q  E+W+
Sbjct:   208 -IAKKKEDFTIIRFDFSTETFKEICVCPYT-LVTRLGCFDGDRLSLLLQGEESQGIEVWM 265

Query:   179 MNDNKCWAKHLTLGPFFN 196
              N  K   K ++   +FN
Sbjct:   266 TN--KLSDKVVSFSQYFN 281

GO:0003674 "molecular_function" evidence=ND

GO:0005737 "cytoplasm" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2013995 AT1G70970 "AT1G70970" [Arabidopsis thaliana (taxid:3702)]

 Score = 117 (46.2 bits), Expect = 0.00020, P = 0.00020
 Identities = 53/216 (24%), Positives = 101/216 (46%)

Query:    15 GLFCIMQSSTNRLTIWNPATREFRNLPNYKYCNSSNRLIPPSTFICLESDPINNDFKLLF 74
             GL C+ QS T +  + NP T++ R LP+ +    +   I  ++F  L  D   N FK+L 
Sbjct:   134 GLICL-QSET-KFALCNPGTKKSRALPDIQAHEKA--FI--TSF--LGYDEATNVFKVLC 185

Query:    75 VHNLW-NEKRKRYGKVPNVQVY-GFRTNSWREV------HGHQLDRYFK--VCYWLVIAD 124
             +  +W +E  KR  +   + V  G  + SWR +      H  +     K  V Y+   + 
Sbjct:   186 LTMVWAHEPSKRVYEYQVLTVESGVESCSWRGITCKEKDHTPETQGLCKGGVLYYGARST 245

Query:   125 TRDLKVILSFHMDNEVFEEIKIPP--HVNYYSSISLYEDSLSIVIPDAEQCFEIWVMND- 181
             +    +++SF++ ++ F  I++P   H++Y+ +  +Y   +++V    E  F+  V+N+ 
Sbjct:   246 SDHRPLVMSFNVRSQEFTAIELPDQLHISYFWNFVIYNGDIALV---NESDFDPRVVNEP 302

Query:   182 --NKC---WAKHLTLGPFFNFRINFGFWKNDAFFIE 212
               NK    W +  T   +   RI    W+ +   ++
Sbjct:   303 NGNKVFHIWVRDATAQEWQRTRIEIPRWEQNVGHVD 338

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2076309 AT3G10240 "AT3G10240" [Arabidopsis thaliana (taxid:3702)]

 Score = 115 (45.5 bits), Expect = 0.00033, P = 0.00033
 Identities = 48/191 (25%), Positives = 80/191 (41%)

Query:    14 DGLFCIMQSSTNRLTIWNPATREFRNLPNYKYCNSSNRLIPPSTFICLESDPINNDFKLL 73
             +GL C  +S+  RL +WNP+TR+   LP  K   +SN L      I L  DP+    K++
Sbjct:   130 NGLICFQESA--RLIVWNPSTRQLLILP--KPNGNSNDLT-----IFLGYDPVEGKHKVM 180

Query:    74 FVHNLWNEKRKRYGKVPNVQVYGFRTNSWREVHGHQLDR--YFK-------VCYWLVIAD 124
              +     E    Y     V   G     WR V  H   R  Y+        V Y +    
Sbjct:   181 CM-----EFSATYDTC-RVLTLGSAQKLWRTVKTHNKHRSDYYDSGRCINGVVYHIAYVK 234

Query:   125 TRDLKVILSFHMDNEVFEEIKIPPHVNYYSSISLYEDSLSIVIPDA--EQCFEIWVMNDN 182
                + V++SF + +E+F+ I++P    +   +  Y   L+ V  +   +    +W++  +
Sbjct:   235 DMCVWVLMSFDVRSEIFDMIELPSSDVHKDVLIDYNGRLACVGREIIEKNGIRLWILEKH 294

Query:   183 KCWAKHLTLGP 193
               W+    L P
Sbjct:   295 NKWSSKDFLAP 305

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: eugene3.00120932 hypothetical protein (367 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	254
TIGR01640	230	TIGR01640, F_box_assoc_1, F-box protein interactio	1e-17

>gnl|CDD|233502 TIGR01640, F_box_assoc_1, F-box protein interaction domain

 Score = 78.6 bits (194), Expect = 1e-17
 Identities = 59/224 (26%), Positives = 88/224 (39%), Gaps = 35/224 (15%)

Query: 10  VGYHDGLFCIMQSSTNRLTIWNPATREFRNLPNYKYCNSSNRLIPPSTFICLESDPINND 69
           V   DGL C   S   RL +WNP+T + R LP       S R    S    L  DPI   
Sbjct: 1   VVPCDGLICF--SYGKRLVVWNPSTGQSRWLP----TPKSRRSNKESDTYFLGYDPIEKQ 54

Query: 70  FKLLFVHNLWNEKRKRYGKVPNVQVYGFRTNSWREV---HGHQLDRYFKVC-----YWL- 120
           +K+L         R         QVY   +NSWR +     H   +   VC     Y+L 
Sbjct: 55  YKVLCF-----SDRSGNRNQSEHQVYTLGSNSWRTIECSPPHHPLKSRGVCINGVLYYLA 109

Query: 121 VIADTRDLKVILSFHMDNEVFEEIKIPPHV-----NYYSSISLYEDSLSIVIPDA-EQCF 174
               T     I+SF + +E F+E  IP          Y S+  Y+  L+++        F
Sbjct: 110 YTLKTNPDYFIVSFDVSSERFKEF-IPLPCGNSDSVDYLSLINYKGKLAVLKQKKDTNNF 168

Query: 175 EIWVMND--NKCWAK--HLTLGPFFNFRINFGFWKNDAFFIESN 214
           ++WV+ND   + W+K   + + P  +   +       + F +  
Sbjct: 169 DLWVLNDAGKQEWSKLFTVPIPPLPDLVDDNFL----SGFTDKG 208

This model describes a large family of plant domains, with several hundred members in Arabidopsis thaliana. Most examples are found C-terminal to an F-box (pfam00646), a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes. Some members have two copies of this domain. Length = 230

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	254
TIGR01640	230	F_box_assoc_1 F-box protein interaction domain. Th	100.0
PF07734	164	FBA_1: F-box associated; InterPro: IPR006527 This	99.73
PF08268	129	FBA_3: F-box associated domain; InterPro: IPR01318	99.71
PHA02713	557	hypothetical protein; Provisional	98.71
PHA03098	534	kelch-like protein; Provisional	98.6
PHA02713	557	hypothetical protein; Provisional	98.52
PLN02153	341	epithiospecifier protein	98.44
PLN02193	470	nitrile-specifier protein	98.41
PHA02790	480	Kelch-like protein; Provisional	98.36
KOG4441	571	consensus Proteins containing BTB/POZ and Kelch do	98.28
TIGR03548	323	mutarot_permut cyclically-permuted mutatrotase fam	98.26
KOG4441	571	consensus Proteins containing BTB/POZ and Kelch do	98.13
PHA03098	534	kelch-like protein; Provisional	97.91
TIGR03547	346	muta_rot_YjhT mutatrotase, YjhT family. Members of	97.82
PRK14131	376	N-acetylneuraminic acid mutarotase; Provisional	97.67
PLN02153	341	epithiospecifier protein	97.65
PHA02790	480	Kelch-like protein; Provisional	97.63
PLN02193	470	nitrile-specifier protein	97.5
TIGR03548	323	mutarot_permut cyclically-permuted mutatrotase fam	97.33
TIGR03547	346	muta_rot_YjhT mutatrotase, YjhT family. Members of	96.62
KOG1230	521	consensus Protein containing repeated kelch motifs	96.6
KOG4693	392	consensus Uncharacterized conserved protein, conta	96.59
PRK14131	376	N-acetylneuraminic acid mutarotase; Provisional	96.55
KOG0379	482	consensus Kelch repeat-containing proteins [Genera	95.06
KOG0379	482	consensus Kelch repeat-containing proteins [Genera	95.05
PLN03215	373	ascorbic acid mannose pathway regulator 1; Provisi	94.23
PF07762	131	DUF1618: Protein of unknown function (DUF1618); In	93.38
KOG1230	521	consensus Protein containing repeated kelch motifs	92.23
KOG4693	392	consensus Uncharacterized conserved protein, conta	91.87
COG4257	353	Vgb Streptogramin lyase [Defense mechanisms]	91.3
COG4257	353	Vgb Streptogramin lyase [Defense mechanisms]	87.42
PF02897	414	Peptidase_S9_N: Prolyl oligopeptidase, N-terminal	85.93
KOG0289	506	consensus mRNA splicing factor [General function p	85.49
PF13964	50	Kelch_6: Kelch motif	85.4
PF13418	49	Kelch_4: Galactose oxidase, central domain; PDB: 2	82.25
KOG2055	514	consensus WD40 repeat protein [General function pr	81.75

>TIGR01640 F_box_assoc_1 F-box protein interaction domain

Probab=100.00  E-value=2.8e-39  Score=267.47  Aligned_cols=209  Identities=26%  Similarity=0.428  Sum_probs=161.2

Q ss_pred             EeccCceEEEEEcCCccEEEEcCcccccccCCCCCCCCCCCCCCCCcceEEEEeeCCCCCeEEEEEeeeeccccccCCCc
Q 039648           10 VGYHDGLFCIMQSSTNRLTIWNPATREFRNLPNYKYCNSSNRLIPPSTFICLESDPINNDFKLLFVHNLWNEKRKRYGKV   89 (254)
Q Consensus        10 ~~scnGLlcl~~~~~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~g~g~d~~~~~yKVv~~~~~~~~~~~~~~~~   89 (254)
                      ++|||||||+....  +++||||+||+++.||+++.....    .....+|||||+.+++||||++.....     ....
T Consensus         1 ~~sCnGLlc~~~~~--~~~V~NP~T~~~~~LP~~~~~~~~----~~~~~~~~G~d~~~~~YKVv~~~~~~~-----~~~~   69 (230)
T TIGR01640         1 VVPCDGLICFSYGK--RLVVWNPSTGQSRWLPTPKSRRSN----KESDTYFLGYDPIEKQYKVLCFSDRSG-----NRNQ   69 (230)
T ss_pred             CcccceEEEEecCC--cEEEECCCCCCEEecCCCCCcccc----cccceEEEeecccCCcEEEEEEEeecC-----CCCC
Confidence            48999999998763  469999999999999986542110    112268999999999999999975311     1245


Q ss_pred             CeEEEEEccCCceeeccccC-------ceEEEE-EEEEEEEecCCCc-eEEEEEECCCccee-EecCCCCCC---ceeEE
Q 039648           90 PNVQVYGFRTNSWREVHGHQ-------LDRYFK-VCYWLVIADTRDL-KVILSFHMDNEVFE-EIKIPPHVN---YYSSI  156 (254)
Q Consensus        90 ~~~~Vys~~~~~Wr~~~~~p-------~~v~~~-~lyWl~~~~~~~~-~~IvsfD~~~e~~~-~i~~P~~~~---~~~~l  156 (254)
                      ..++||++++++||.++..+       .+|++| ++||++....... ..|++||+++|+|+ .+++|....   ....|
T Consensus        70 ~~~~Vys~~~~~Wr~~~~~~~~~~~~~~~v~~~G~lyw~~~~~~~~~~~~IvsFDl~~E~f~~~i~~P~~~~~~~~~~~L  149 (230)
T TIGR01640        70 SEHQVYTLGSNSWRTIECSPPHHPLKSRGVCINGVLYYLAYTLKTNPDYFIVSFDVSSERFKEFIPLPCGNSDSVDYLSL  149 (230)
T ss_pred             ccEEEEEeCCCCccccccCCCCccccCCeEEECCEEEEEEEECCCCCcEEEEEEEcccceEeeeeecCccccccccceEE
Confidence            68999999999999988541       499999 9999997654223 38999999999999 589987643   34689


Q ss_pred             EEeCCeEEEEecC-CCCEEEEEEECC--CcceEEEEEecC--CCcc---eeeEEEEeCCeEEEEeCccccCCEEEEEECC
Q 039648          157 SLYEDSLSIVIPD-AEQCFEIWVMND--NKCWAKHLTLGP--FFNF---RINFGFWKNDAFFIESNSRIYGGCLFLHEHR  228 (254)
Q Consensus       157 ~~~~g~L~~~~~~-~~~~~~IW~l~~--~~~W~~~~~i~~--~~~~---~~~~~~~~~g~i~l~~~~~~~~~~~~~yd~~  228 (254)
                      ++++|+||++... ....++||+|++  +..|+|+++|+.  ...+   ..|+++.++|+|++..... +...+++||++
T Consensus       150 ~~~~G~L~~v~~~~~~~~~~IWvl~d~~~~~W~k~~~i~~~~~~~~~~~~~~~~~~~~g~I~~~~~~~-~~~~~~~y~~~  228 (230)
T TIGR01640       150 INYKGKLAVLKQKKDTNNFDLWVLNDAGKQEWSKLFTVPIPPLPDLVDDNFLSGFTDKGEIVLCCEDE-NPFYIFYYNVG  228 (230)
T ss_pred             EEECCEEEEEEecCCCCcEEEEEECCCCCCceeEEEEEcCcchhhhhhheeEeEEeeCCEEEEEeCCC-CceEEEEEecc
Confidence            9999999999843 235699999997  557999999984  2222   3588899999999987620 12339999998


Q ss_pred             CC
Q 039648          229 TK  230 (254)
Q Consensus       229 t~  230 (254)
                      ++
T Consensus       229 ~~  230 (230)
T TIGR01640       229 EN  230 (230)
T ss_pred             CC
Confidence            75

This model describes a large family of plant domains, with several hundred members in Arabidopsis thaliana. Most examples are found C-terminal to an F-box (pfam00646), a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes. Some members have two copies of this domain.

>PF07734 FBA_1: F-box associated; InterPro: IPR006527 This domain occurs in a diverse superfamily of genes in plants

Probab=99.73  E-value=4e-16  Score=122.39  Aligned_cols=138  Identities=19%  Similarity=0.333  Sum_probs=98.2

Q ss_pred             eEEEE-EEEEEEEecCCCc-eEEEEEECCCcce-eEecCCCCCC---ceeEEEEe-CCeEEEEec-CCCCEEEEEEECC-
Q 039648          111 DRYFK-VCYWLVIADTRDL-KVILSFHMDNEVF-EEIKIPPHVN---YYSSISLY-EDSLSIVIP-DAEQCFEIWVMND-  181 (254)
Q Consensus       111 ~v~~~-~lyWl~~~~~~~~-~~IvsfD~~~e~~-~~i~~P~~~~---~~~~l~~~-~g~L~~~~~-~~~~~~~IW~l~~-  181 (254)
                      +|++| ++||++....... ..|++||+++|+| +.+++|....   ....|... +|+||++.. .....++||+|++ 
T Consensus         1 gV~vnG~~hW~~~~~~~~~~~~IlsFDl~~E~F~~~~~lP~~~~~~~~~~~L~~v~~~~L~~~~~~~~~~~~~IWvm~~~   80 (164)
T PF07734_consen    1 GVFVNGALHWLAYDENNDEKDFILSFDLSTEKFGRSLPLPFCNDDDDDSVSLSVVRGDCLCVLYQCDETSKIEIWVMKKY   80 (164)
T ss_pred             CEEECCEEEeeEEecCCCCceEEEEEeccccccCCEECCCCccCccCCEEEEEEecCCEEEEEEeccCCccEEEEEEeee
Confidence            68999 9999998765432 3899999999999 8899998764   45677544 789999973 4455799999995 


Q ss_pred             ---CcceEEEEEecCCCc--ce-----eeEEEEeCCeEEEEeCccccC---CEEEEEECCCCcEEEEEEcC---c-eEEE
Q 039648          182 ---NKCWAKHLTLGPFFN--FR-----INFGFWKNDAFFIESNSRIYG---GCLFLHEHRTKEIKNLQVTN---P-QFVV  244 (254)
Q Consensus       182 ---~~~W~~~~~i~~~~~--~~-----~~~~~~~~g~i~l~~~~~~~~---~~~~~yd~~t~~~~~~~~~~---~-~~~~  244 (254)
                         .++|+|.++|+....  ..     ..+-+.+++++++........   ..+.+|+ +++.++.+++..   . ..+.
T Consensus        81 ~~~~~SWtK~~~i~~~~~~~~~~~~~~~~~~i~~~~~vlv~~~~~~~~~~~~~i~i~g-~~~~~~~~~~~~~~~~~~~~~  159 (164)
T PF07734_consen   81 GYGKESWTKLFTIDLPPLPSLFFHFRNPSFFIDEEKKVLVCCDKETQREEKNKIYIVG-EDGKFIEVDIEDKSSCWPSIC  159 (164)
T ss_pred             ccCcceEEEEEEEecCCCCCcccccccceEEEeCCCeEEEEEcCCCCccceeEEEEEc-CCCEEEEcccccCCCCCCCEE
Confidence               579999999984321  11     122334556666665421111   4577888 778888887732   1 5678


Q ss_pred             Eeeec
Q 039648          245 IYKES  249 (254)
Q Consensus       245 ~y~eS  249 (254)
                      .|+||
T Consensus       160 ~YvpS  164 (164)
T PF07734_consen  160 NYVPS  164 (164)
T ss_pred             EECCC
Confidence            99987

Most examples are found C-terminal to an F-box (IPR001810 from INTERPRO), a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes []. Some members have two copies of this domain.

>PF08268 FBA_3: F-box associated domain; InterPro: IPR013187 This domain occurs in a diverse superfamily of genes in plants

Probab=99.71  E-value=3.5e-16  Score=117.85  Aligned_cols=102  Identities=25%  Similarity=0.432  Sum_probs=81.6

Q ss_pred             eEEEE-EEEEEEEecCCCceEEEEEECCCcceeEecCCCCC--C-ceeEEEEeCCeEEEEecCC---CCEEEEEEECC--
Q 039648          111 DRYFK-VCYWLVIADTRDLKVILSFHMDNEVFEEIKIPPHV--N-YYSSISLYEDSLSIVIPDA---EQCFEIWVMND--  181 (254)
Q Consensus       111 ~v~~~-~lyWl~~~~~~~~~~IvsfD~~~e~~~~i~~P~~~--~-~~~~l~~~~g~L~~~~~~~---~~~~~IW~l~~--  181 (254)
                      |+++| ++||++.........|+|||+++|+|+.+++|...  . ....|.+++|+||++....   ...++||+|+|  
T Consensus         1 gicinGvly~~a~~~~~~~~~IvsFDv~~E~f~~i~~P~~~~~~~~~~~L~~~~G~L~~v~~~~~~~~~~~~iWvLeD~~   80 (129)
T PF08268_consen    1 GICINGVLYWLAWSEDSDNNVIVSFDVRSEKFRFIKLPEDPYSSDCSSTLIEYKGKLALVSYNDQGEPDSIDIWVLEDYE   80 (129)
T ss_pred             CEEECcEEEeEEEECCCCCcEEEEEEcCCceEEEEEeeeeeccccCccEEEEeCCeEEEEEecCCCCcceEEEEEeeccc
Confidence            68999 99999988444567999999999999999999221  1 6789999999999998432   24699999999  


Q ss_pred             CcceEEEEEecCCC-------cceeeEEEEeCCeEEEE
Q 039648          182 NKCWAKHLTLGPFF-------NFRINFGFWKNDAFFIE  212 (254)
Q Consensus       182 ~~~W~~~~~i~~~~-------~~~~~~~~~~~g~i~l~  212 (254)
                      +++|++.+.+-+..       ....++++.++|+|++.
T Consensus        81 k~~Wsk~~~~lp~~~~~~~~~~~~~~~g~~~~Geiv~~  118 (129)
T PF08268_consen   81 KQEWSKKHIVLPPSWQHFVHDCDFSFVGVTDTGEIVFA  118 (129)
T ss_pred             cceEEEEEEECChHHhcccCCcEEEEEEEcCCCEEEEE
Confidence            78999987754431       13567788889998887

Most examples are found C-terminal to an F-box (IPR001810 from INTERPRO), a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes []. Some members have two copies of this domain.

>PHA02713 hypothetical protein; Provisional

Probab=98.71  E-value=2.7e-06  Score=79.17  Aligned_cols=192  Identities=10%  Similarity=0.058  Sum_probs=119.8

Q ss_pred             cEEEEcCcccccccCCCCCCCCCCCCCCCCcceEEEEeeCCCCCeEEEEEeeeeccccccCCCcCeEEEEEccCCceeec
Q 039648           26 RLTIWNPATREFRNLPNYKYCNSSNRLIPPSTFICLESDPINNDFKLLFVHNLWNEKRKRYGKVPNVQVYGFRTNSWREV  105 (254)
Q Consensus        26 ~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~g~g~d~~~~~yKVv~~~~~~~~~~~~~~~~~~~~Vys~~~~~Wr~~  105 (254)
                      .+..+||.+++|..+|+.+..+        .......++     =||..++..  +   +......+|+|+..++.|+.+
T Consensus       321 ~v~~Yd~~~n~W~~~~~m~~~R--------~~~~~~~~~-----g~IYviGG~--~---~~~~~~sve~Ydp~~~~W~~~  382 (557)
T PHA02713        321 KVYKINIENKIHVELPPMIKNR--------CRFSLAVID-----DTIYAIGGQ--N---GTNVERTIECYTMGDDKWKML  382 (557)
T ss_pred             eEEEEECCCCeEeeCCCCcchh--------hceeEEEEC-----CEEEEECCc--C---CCCCCceEEEEECCCCeEEEC
Confidence            4688999999999999876531        111111222     256665432  1   112344799999999999998


Q ss_pred             cccC------ceEEEE-EEEEEEEecCC-------------------CceEEEEEECCCcceeEec-CCCCCCceeEEEE
Q 039648          106 HGHQ------LDRYFK-VCYWLVIADTR-------------------DLKVILSFHMDNEVFEEIK-IPPHVNYYSSISL  158 (254)
Q Consensus       106 ~~~p------~~v~~~-~lyWl~~~~~~-------------------~~~~IvsfD~~~e~~~~i~-~P~~~~~~~~l~~  158 (254)
                      ..+|      ..+.++ .+|=+......                   ....+.+||+++++|+.++ +|... ....++.
T Consensus       383 ~~mp~~r~~~~~~~~~g~IYviGG~~~~~~~~~~~~~~~~~~~~~~~~~~~ve~YDP~td~W~~v~~m~~~r-~~~~~~~  461 (557)
T PHA02713        383 PDMPIALSSYGMCVLDQYIYIIGGRTEHIDYTSVHHMNSIDMEEDTHSSNKVIRYDTVNNIWETLPNFWTGT-IRPGVVS  461 (557)
T ss_pred             CCCCcccccccEEEECCEEEEEeCCCcccccccccccccccccccccccceEEEECCCCCeEeecCCCCccc-ccCcEEE
Confidence            8774      345667 99877532210                   1246899999999999873 33322 4566889


Q ss_pred             eCCeEEEEecCC-CCE-E-EEEEECC-C-cceEEEEEecCCCcceeeEEEEeCCeEEEEeCccccCCEEEEEECCCCcEE
Q 039648          159 YEDSLSIVIPDA-EQC-F-EIWVMND-N-KCWAKHLTLGPFFNFRINFGFWKNDAFFIESNSRIYGGCLFLHEHRTKEIK  233 (254)
Q Consensus       159 ~~g~L~~~~~~~-~~~-~-~IW~l~~-~-~~W~~~~~i~~~~~~~~~~~~~~~g~i~l~~~~~~~~~~~~~yd~~t~~~~  233 (254)
                      ++|+|.++++.. ... . .+-..+. . .+|+....|+... ...-+. .-+|.|++.-+.. ....+-.||++|++|.
T Consensus       462 ~~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~~~~~m~~~r-~~~~~~-~~~~~iyv~Gg~~-~~~~~e~yd~~~~~W~  538 (557)
T PHA02713        462 HKDDIYVVCDIKDEKNVKTCIFRYNTNTYNGWELITTTESRL-SALHTI-LHDNTIMMLHCYE-SYMLQDTFNVYTYEWN  538 (557)
T ss_pred             ECCEEEEEeCCCCCCccceeEEEecCCCCCCeeEccccCccc-ccceeE-EECCEEEEEeeec-ceeehhhcCccccccc
Confidence            999999998421 111 1 2455554 4 5899987766432 111111 2266777765421 0125779999999999


Q ss_pred             EEEEcC
Q 039648          234 NLQVTN  239 (254)
Q Consensus       234 ~~~~~~  239 (254)
                      .+.-+.
T Consensus       539 ~~~~~~  544 (557)
T PHA02713        539 HICHQH  544 (557)
T ss_pred             chhhhc
Confidence            774443

>PHA03098 kelch-like protein; Provisional

Probab=98.60  E-value=6e-06  Score=76.60  Aligned_cols=190  Identities=10%  Similarity=0.157  Sum_probs=116.5

Q ss_pred             cEEEEcCcccccccCCCCCCCCCCCCCCCCcceEEEEeeCCCCCeEEEEEeeeeccccccCCCcCeEEEEEccCCceeec
Q 039648           26 RLTIWNPATREFRNLPNYKYCNSSNRLIPPSTFICLESDPINNDFKLLFVHNLWNEKRKRYGKVPNVQVYGFRTNSWREV  105 (254)
Q Consensus        26 ~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~g~g~d~~~~~yKVv~~~~~~~~~~~~~~~~~~~~Vys~~~~~Wr~~  105 (254)
                      +++.+||.|++|..+|+.+..  +.    ....+  ..+     =+|..++...     +......+++|+..+++|+..
T Consensus       312 ~v~~yd~~~~~W~~~~~~~~~--R~----~~~~~--~~~-----~~lyv~GG~~-----~~~~~~~v~~yd~~~~~W~~~  373 (534)
T PHA03098        312 SVVSYDTKTKSWNKVPELIYP--RK----NPGVT--VFN-----NRIYVIGGIY-----NSISLNTVESWKPGESKWREE  373 (534)
T ss_pred             cEEEEeCCCCeeeECCCCCcc--cc----cceEE--EEC-----CEEEEEeCCC-----CCEecceEEEEcCCCCceeeC
Confidence            478999999999999986542  11    11111  112     1355554321     012345689999999999998


Q ss_pred             cccC------ceEEEE-EEEEEEEecCC--CceEEEEEECCCcceeEec-CCCCCCceeEEEEeCCeEEEEecCC-CC--
Q 039648          106 HGHQ------LDRYFK-VCYWLVIADTR--DLKVILSFHMDNEVFEEIK-IPPHVNYYSSISLYEDSLSIVIPDA-EQ--  172 (254)
Q Consensus       106 ~~~p------~~v~~~-~lyWl~~~~~~--~~~~IvsfD~~~e~~~~i~-~P~~~~~~~~l~~~~g~L~~~~~~~-~~--  172 (254)
                      ..+|      ..+.++ .+|=+......  ....+..||+.+++|+.++ +|... .....+..+|+|.++++.. ..  
T Consensus       374 ~~lp~~r~~~~~~~~~~~iYv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r-~~~~~~~~~~~iyv~GG~~~~~~~  452 (534)
T PHA03098        374 PPLIFPRYNPCVVNVNNLIYVIGGISKNDELLKTVECFSLNTNKWSKGSPLPISH-YGGCAIYHDGKIYVIGGISYIDNI  452 (534)
T ss_pred             CCcCcCCccceEEEECCEEEEECCcCCCCcccceEEEEeCCCCeeeecCCCCccc-cCceEEEECCEEEEECCccCCCCC
Confidence            7663      345566 88876542211  1257899999999999874 44332 3345677899999888421 11  


Q ss_pred             --EEEEEEECC-CcceEEEEEecCCCcceeeEEEEeCCeEEEEeCcc--ccCCEEEEEECCCCcEEEEE
Q 039648          173 --CFEIWVMND-NKCWAKHLTLGPFFNFRINFGFWKNDAFFIESNSR--IYGGCLFLHEHRTKEIKNLQ  236 (254)
Q Consensus       173 --~~~IW~l~~-~~~W~~~~~i~~~~~~~~~~~~~~~g~i~l~~~~~--~~~~~~~~yd~~t~~~~~~~  236 (254)
                        .-.+|..+. ...|+++-.++... ....++.. ++.|++..+..  .....+..||+++++|+.+.
T Consensus       453 ~~~~~v~~yd~~~~~W~~~~~~~~~r-~~~~~~~~-~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~  519 (534)
T PHA03098        453 KVYNIVESYNPVTNKWTELSSLNFPR-INASLCIF-NNKIYVVGGDKYEYYINEIEVYDDKTNTWTLFC  519 (534)
T ss_pred             cccceEEEecCCCCceeeCCCCCccc-ccceEEEE-CCEEEEEcCCcCCcccceeEEEeCCCCEEEecC
Confidence              123777776 78999875444222 11112222 66676654311  00246899999999998774

>PHA02713 hypothetical protein; Provisional

Probab=98.52  E-value=2e-05  Score=73.40  Aligned_cols=189  Identities=10%  Similarity=0.100  Sum_probs=115.8

Q ss_pred             EEEEcCcccccccCCCCCCCCCCCCCCCCcceEEEEeeCCCCCeEEEEEeeeeccccccCCCcCeEEEEEccCCceeecc
Q 039648           27 LTIWNPATREFRNLPNYKYCNSSNRLIPPSTFICLESDPINNDFKLLFVHNLWNEKRKRYGKVPNVQVYGFRTNSWREVH  106 (254)
Q Consensus        27 ~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~g~g~d~~~~~yKVv~~~~~~~~~~~~~~~~~~~~Vys~~~~~Wr~~~  106 (254)
                      ...+||.|++|..+++.|...       ..... ..++     =+|..++.....    ......++.|+..++.|+.+.
T Consensus       274 v~~yd~~~~~W~~l~~mp~~r-------~~~~~-a~l~-----~~IYviGG~~~~----~~~~~~v~~Yd~~~n~W~~~~  336 (557)
T PHA02713        274 ILVYNINTMEYSVISTIPNHI-------INYAS-AIVD-----NEIIIAGGYNFN----NPSLNKVYKINIENKIHVELP  336 (557)
T ss_pred             EEEEeCCCCeEEECCCCCccc-------cceEE-EEEC-----CEEEEEcCCCCC----CCccceEEEEECCCCeEeeCC
Confidence            578899999999998776531       01111 1111     255555431100    122457899999999999988


Q ss_pred             ccC------ceEEEE-EEEEEEEecCC-CceEEEEEECCCcceeEe-cCCCCCCceeEEEEeCCeEEEEecCCCC-----
Q 039648          107 GHQ------LDRYFK-VCYWLVIADTR-DLKVILSFHMDNEVFEEI-KIPPHVNYYSSISLYEDSLSIVIPDAEQ-----  172 (254)
Q Consensus       107 ~~p------~~v~~~-~lyWl~~~~~~-~~~~IvsfD~~~e~~~~i-~~P~~~~~~~~l~~~~g~L~~~~~~~~~-----  172 (254)
                      .+|      ..+.++ .+|=+...... ....+-+||+.+++|..+ ++|... .....+.++|+|.++++....     
T Consensus       337 ~m~~~R~~~~~~~~~g~IYviGG~~~~~~~~sve~Ydp~~~~W~~~~~mp~~r-~~~~~~~~~g~IYviGG~~~~~~~~~  415 (557)
T PHA02713        337 PMIKNRCRFSLAVIDDTIYAIGGQNGTNVERTIECYTMGDDKWKMLPDMPIAL-SSYGMCVLDQYIYIIGGRTEHIDYTS  415 (557)
T ss_pred             CCcchhhceeEEEECCEEEEECCcCCCCCCceEEEEECCCCeEEECCCCCccc-ccccEEEECCEEEEEeCCCccccccc
Confidence            774      345677 99988654321 134689999999999987 344433 345567889999999842110     


Q ss_pred             ---------------EEEEEEECC-CcceEEEEEecCCCcceeeEEEEeCCeEEEEeCccc---cCCEEEEEECCC-CcE
Q 039648          173 ---------------CFEIWVMND-NKCWAKHLTLGPFFNFRINFGFWKNDAFFIESNSRI---YGGCLFLHEHRT-KEI  232 (254)
Q Consensus       173 ---------------~~~IW~l~~-~~~W~~~~~i~~~~~~~~~~~~~~~g~i~l~~~~~~---~~~~~~~yd~~t-~~~  232 (254)
                                     .-.+...+. ...|+.+..|+... ....+. .-+|.|++..+...   ....+-.||+++ ++|
T Consensus       416 ~~~~~~~~~~~~~~~~~~ve~YDP~td~W~~v~~m~~~r-~~~~~~-~~~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~W  493 (557)
T PHA02713        416 VHHMNSIDMEEDTHSSNKVIRYDTVNNIWETLPNFWTGT-IRPGVV-SHKDDIYVVCDIKDEKNVKTCIFRYNTNTYNGW  493 (557)
T ss_pred             ccccccccccccccccceEEEECCCCCeEeecCCCCccc-ccCcEE-EECCEEEEEeCCCCCCccceeEEEecCCCCCCe
Confidence                           123555554 67899876654332 111122 33567766643100   012467999999 899


Q ss_pred             EEE
Q 039648          233 KNL  235 (254)
Q Consensus       233 ~~~  235 (254)
                      +.+
T Consensus       494 ~~~  496 (557)
T PHA02713        494 ELI  496 (557)
T ss_pred             eEc
Confidence            876

>PLN02153 epithiospecifier protein

Probab=98.44  E-value=5.5e-05  Score=66.20  Aligned_cols=196  Identities=10%  Similarity=0.048  Sum_probs=111.6

Q ss_pred             cEEEEcCcccccccCCCCCCCCCCCCCCCCcceEEEEeeCCCCCeEEEEEeeeeccccccCCCcCeEEEEEccCCceeec
Q 039648           26 RLTIWNPATREFRNLPNYKYCNSSNRLIPPSTFICLESDPINNDFKLLFVHNLWNEKRKRYGKVPNVQVYGFRTNSWREV  105 (254)
Q Consensus        26 ~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~g~g~d~~~~~yKVv~~~~~~~~~~~~~~~~~~~~Vys~~~~~Wr~~  105 (254)
                      +++++||.+++|..+|+.... |+   ..........++     =||+.+.....     ......+++|+.+++.|+.+
T Consensus        51 ~~~~yd~~~~~W~~~~~~~~~-p~---~~~~~~~~~~~~-----~~iyv~GG~~~-----~~~~~~v~~yd~~t~~W~~~  116 (341)
T PLN02153         51 DLYVFDFNTHTWSIAPANGDV-PR---ISCLGVRMVAVG-----TKLYIFGGRDE-----KREFSDFYSYDTVKNEWTFL  116 (341)
T ss_pred             cEEEEECCCCEEEEcCccCCC-CC---CccCceEEEEEC-----CEEEEECCCCC-----CCccCcEEEEECCCCEEEEe
Confidence            579999999999998865321 11   000011111111     25666543211     12234689999999999987


Q ss_pred             ccc-----C------ceEEEE-EEEEEEEecCC-------CceEEEEEECCCcceeEecCCCC---CCceeEEEEeCCeE
Q 039648          106 HGH-----Q------LDRYFK-VCYWLVIADTR-------DLKVILSFHMDNEVFEEIKIPPH---VNYYSSISLYEDSL  163 (254)
Q Consensus       106 ~~~-----p------~~v~~~-~lyWl~~~~~~-------~~~~IvsfD~~~e~~~~i~~P~~---~~~~~~l~~~~g~L  163 (254)
                      ..+     |      ..+..+ .+|=+......       .-..+.+||+++.+|..++.+..   ......++..+|+|
T Consensus       117 ~~~~~~~~p~~R~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~v~~yd~~~~~W~~l~~~~~~~~~r~~~~~~~~~~~i  196 (341)
T PLN02153        117 TKLDEEGGPEARTFHSMASDENHVYVFGGVSKGGLMKTPERFRTIEAYNIADGKWVQLPDPGENFEKRGGAGFAVVQGKI  196 (341)
T ss_pred             ccCCCCCCCCCceeeEEEEECCEEEEECCccCCCccCCCcccceEEEEECCCCeEeeCCCCCCCCCCCCcceEEEECCeE
Confidence            643     2      334555 77765432210       01358899999999998864321   11334567889999


Q ss_pred             EEEecCC----------CCEEEEEEECC-CcceEEEEEecCCC--cceeeEEEEeCCeEEEEeCccc-----------cC
Q 039648          164 SIVIPDA----------EQCFEIWVMND-NKCWAKHLTLGPFF--NFRINFGFWKNDAFFIESNSRI-----------YG  219 (254)
Q Consensus       164 ~~~~~~~----------~~~~~IW~l~~-~~~W~~~~~i~~~~--~~~~~~~~~~~g~i~l~~~~~~-----------~~  219 (254)
                      .++....          ...-++++++- ..+|+++-.....+  ....... .-++.|++.-....           ..
T Consensus       197 yv~GG~~~~~~~gG~~~~~~~~v~~yd~~~~~W~~~~~~g~~P~~r~~~~~~-~~~~~iyv~GG~~~~~~~~~~~~~~~~  275 (341)
T PLN02153        197 WVVYGFATSILPGGKSDYESNAVQFFDPASGKWTEVETTGAKPSARSVFAHA-VVGKYIIIFGGEVWPDLKGHLGPGTLS  275 (341)
T ss_pred             EEEeccccccccCCccceecCceEEEEcCCCcEEeccccCCCCCCcceeeeE-EECCEEEEECcccCCcccccccccccc
Confidence            9886311          01124666665 68899986543211  1111112 22455655543100           01


Q ss_pred             CEEEEEECCCCcEEEEE
Q 039648          220 GCLFLHEHRTKEIKNLQ  236 (254)
Q Consensus       220 ~~~~~yd~~t~~~~~~~  236 (254)
                      ..+..||+++++|+.+.
T Consensus       276 n~v~~~d~~~~~W~~~~  292 (341)
T PLN02153        276 NEGYALDTETLVWEKLG  292 (341)
T ss_pred             ccEEEEEcCccEEEecc
Confidence            26899999999999875

>PLN02193 nitrile-specifier protein

Probab=98.41  E-value=0.00012  Score=67.00  Aligned_cols=197  Identities=11%  Similarity=0.053  Sum_probs=115.2

Q ss_pred             cEEEEcCcccccccCCCCCCCCCCCCCCCCcceEEEEeeCCCCCeEEEEEeeeeccccccCCCcCeEEEEEccCCceeec
Q 039648           26 RLTIWNPATREFRNLPNYKYCNSSNRLIPPSTFICLESDPINNDFKLLFVHNLWNEKRKRYGKVPNVQVYGFRTNSWREV  105 (254)
Q Consensus        26 ~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~g~g~d~~~~~yKVv~~~~~~~~~~~~~~~~~~~~Vys~~~~~Wr~~  105 (254)
                      +++++||.|++|..+|..... |.   ..........++     =|+..+.....     ......+++|+..++.|+.+
T Consensus       194 ~v~~yD~~~~~W~~~~~~g~~-P~---~~~~~~~~v~~~-----~~lYvfGG~~~-----~~~~ndv~~yD~~t~~W~~l  259 (470)
T PLN02193        194 HLYVFDLETRTWSISPATGDV-PH---LSCLGVRMVSIG-----STLYVFGGRDA-----SRQYNGFYSFDTTTNEWKLL  259 (470)
T ss_pred             cEEEEECCCCEEEeCCCCCCC-CC---CcccceEEEEEC-----CEEEEECCCCC-----CCCCccEEEEECCCCEEEEc
Confidence            479999999999988753211 11   000111111222     14444432111     12234689999999999998


Q ss_pred             ccc---C------ceEEEE-EEEEEEEecC-CCceEEEEEECCCcceeEecCCCCCC---ceeEEEEeCCeEEEEec-CC
Q 039648          106 HGH---Q------LDRYFK-VCYWLVIADT-RDLKVILSFHMDNEVFEEIKIPPHVN---YYSSISLYEDSLSIVIP-DA  170 (254)
Q Consensus       106 ~~~---p------~~v~~~-~lyWl~~~~~-~~~~~IvsfD~~~e~~~~i~~P~~~~---~~~~l~~~~g~L~~~~~-~~  170 (254)
                      ..+   |      ..+..+ .+|-+..... .....+.+||+.+.+|..++.|....   ....++..+|+|.++.. ..
T Consensus       260 ~~~~~~P~~R~~h~~~~~~~~iYv~GG~~~~~~~~~~~~yd~~t~~W~~~~~~~~~~~~R~~~~~~~~~gkiyviGG~~g  339 (470)
T PLN02193        260 TPVEEGPTPRSFHSMAADEENVYVFGGVSATARLKTLDSYNIVDKKWFHCSTPGDSFSIRGGAGLEVVQGKVWVVYGFNG  339 (470)
T ss_pred             CcCCCCCCCccceEEEEECCEEEEECCCCCCCCcceEEEEECCCCEEEeCCCCCCCCCCCCCcEEEEECCcEEEEECCCC
Confidence            654   3      234455 7776643221 11246889999999999886543221   34566778999998874 22


Q ss_pred             CCEEEEEEECC-CcceEEEEEecCCC--cceeeEEEEeCCeEEEEeCccc-----------cCCEEEEEECCCCcEEEEE
Q 039648          171 EQCFEIWVMND-NKCWAKHLTLGPFF--NFRINFGFWKNDAFFIESNSRI-----------YGGCLFLHEHRTKEIKNLQ  236 (254)
Q Consensus       171 ~~~~~IW~l~~-~~~W~~~~~i~~~~--~~~~~~~~~~~g~i~l~~~~~~-----------~~~~~~~yd~~t~~~~~~~  236 (254)
                      ...-++|+++- ..+|+++..+...+  ...... +.-++.|++.-....           ....+..||+.|++|+.+.
T Consensus       340 ~~~~dv~~yD~~t~~W~~~~~~g~~P~~R~~~~~-~~~~~~iyv~GG~~~~~~~~~~~~~~~~ndv~~~D~~t~~W~~~~  418 (470)
T PLN02193        340 CEVDDVHYYDPVQDKWTQVETFGVRPSERSVFAS-AAVGKHIVIFGGEIAMDPLAHVGPGQLTDGTFALDTETLQWERLD  418 (470)
T ss_pred             CccCceEEEECCCCEEEEeccCCCCCCCcceeEE-EEECCEEEEECCccCCccccccCccceeccEEEEEcCcCEEEEcc
Confidence            22356788776 68899986653221  111122 223456665543110           0124899999999999885


Q ss_pred             E
Q 039648          237 V  237 (254)
Q Consensus       237 ~  237 (254)
                      .
T Consensus       419 ~  419 (470)
T PLN02193        419 K  419 (470)
T ss_pred             c
Confidence            3

>PHA02790 Kelch-like protein; Provisional

Probab=98.36  E-value=8.5e-05  Score=68.08  Aligned_cols=180  Identities=11%  Similarity=0.021  Sum_probs=111.8

Q ss_pred             EEEEcCcccccccCCCCCCCCCCCCCCCCcceEEEEeeCCCCCeEEEEEeeeeccccccCCCcCeEEEEEccCCceeecc
Q 039648           27 LTIWNPATREFRNLPNYKYCNSSNRLIPPSTFICLESDPINNDFKLLFVHNLWNEKRKRYGKVPNVQVYGFRTNSWREVH  106 (254)
Q Consensus        27 ~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~g~g~d~~~~~yKVv~~~~~~~~~~~~~~~~~~~~Vys~~~~~Wr~~~  106 (254)
                      ...+||.+++|..+|+.+..+      ....  +...|     =+|..++..  +      ....++.|+..+++|..+.
T Consensus       289 v~~Ydp~~~~W~~~~~m~~~r------~~~~--~v~~~-----~~iYviGG~--~------~~~sve~ydp~~n~W~~~~  347 (480)
T PHA02790        289 AIAVNYISNNWIPIPPMNSPR------LYAS--GVPAN-----NKLYVVGGL--P------NPTSVERWFHGDAAWVNMP  347 (480)
T ss_pred             EEEEECCCCEEEECCCCCchh------hcce--EEEEC-----CEEEEECCc--C------CCCceEEEECCCCeEEECC
Confidence            567899999999999876531      1111  11122     255555431  1      1245799999999999988


Q ss_pred             ccC------ceEEEE-EEEEEEEecCCCceEEEEEECCCcceeEecCCCCCCceeEEEEeCCeEEEEecCCCCEEEEEEE
Q 039648          107 GHQ------LDRYFK-VCYWLVIADTRDLKVILSFHMDNEVFEEIKIPPHVNYYSSISLYEDSLSIVIPDAEQCFEIWVM  179 (254)
Q Consensus       107 ~~p------~~v~~~-~lyWl~~~~~~~~~~IvsfD~~~e~~~~i~~P~~~~~~~~l~~~~g~L~~~~~~~~~~~~IW~l  179 (254)
                      .+|      ..+.++ .+|=+..... ....+.+||.++++|+.++.++........+.++|+|.++++.    .+++-.
T Consensus       348 ~l~~~r~~~~~~~~~g~IYviGG~~~-~~~~ve~ydp~~~~W~~~~~m~~~r~~~~~~~~~~~IYv~GG~----~e~ydp  422 (480)
T PHA02790        348 SLLKPRCNPAVASINNVIYVIGGHSE-TDTTTEYLLPNHDQWQFGPSTYYPHYKSCALVFGRRLFLVGRN----AEFYCE  422 (480)
T ss_pred             CCCCCCcccEEEEECCEEEEecCcCC-CCccEEEEeCCCCEEEeCCCCCCccccceEEEECCEEEEECCc----eEEecC
Confidence            774      355667 9997754322 2246788999999999874333222345667899999998842    233322


Q ss_pred             CCCcceEEEEEecCCCcceeeEEEEeCCeEEEEeCcc--ccCCEEEEEECCCCcEEEE
Q 039648          180 NDNKCWAKHLTLGPFFNFRINFGFWKNDAFFIESNSR--IYGGCLFLHEHRTKEIKNL  235 (254)
Q Consensus       180 ~~~~~W~~~~~i~~~~~~~~~~~~~~~g~i~l~~~~~--~~~~~~~~yd~~t~~~~~~  235 (254)
                      + ...|+....++... ....+. .-+|.|++.-+..  ..-..+-.||+++++|...
T Consensus       423 ~-~~~W~~~~~m~~~r-~~~~~~-v~~~~IYviGG~~~~~~~~~ve~Yd~~~~~W~~~  477 (480)
T PHA02790        423 S-SNTWTLIDDPIYPR-DNPELI-IVDNKLLLIGGFYRGSYIDTIEVYNNRTYSWNIW  477 (480)
T ss_pred             C-CCcEeEcCCCCCCc-cccEEE-EECCEEEEECCcCCCcccceEEEEECCCCeEEec
Confidence            3 58899876554322 111122 2366676664311  0014578999999999865

>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]

Probab=98.28  E-value=6.9e-05  Score=69.92  Aligned_cols=189  Identities=11%  Similarity=0.075  Sum_probs=120.1

Q ss_pred             cEEEEcCcccccccCCCCCCCCCCCCCCCCcceEEEEeeCCCCCeEEEEEeeeeccccccCCCcCeEEEEEccCCceeec
Q 039648           26 RLTIWNPATREFRNLPNYKYCNSSNRLIPPSTFICLESDPINNDFKLLFVHNLWNEKRKRYGKVPNVQVYGFRTNSWREV  105 (254)
Q Consensus        26 ~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~g~g~d~~~~~yKVv~~~~~~~~~~~~~~~~~~~~Vys~~~~~Wr~~  105 (254)
                      ....+||.|.+|..+|+....+         ..+|.+.    -..+|..+....     +...-..+|.|+-.++.|..+
T Consensus       350 ~ve~YD~~~~~W~~~a~M~~~R---------~~~~v~~----l~g~iYavGG~d-----g~~~l~svE~YDp~~~~W~~v  411 (571)
T KOG4441|consen  350 SVERYDPRTNQWTPVAPMNTKR---------SDFGVAV----LDGKLYAVGGFD-----GEKSLNSVECYDPVTNKWTPV  411 (571)
T ss_pred             eEEEecCCCCceeccCCccCcc---------ccceeEE----ECCEEEEEeccc-----cccccccEEEecCCCCccccc
Confidence            4688999999999999886642         1122211    124555554321     123455899999999999999


Q ss_pred             cccC------ceEEEE-EEEEEEEecCCC--ceEEEEEECCCcceeEe-cCCCCCCceeEEEEeCCeEEEEecC-CCCEE
Q 039648          106 HGHQ------LDRYFK-VCYWLVIADTRD--LKVILSFHMDNEVFEEI-KIPPHVNYYSSISLYEDSLSIVIPD-AEQCF  174 (254)
Q Consensus       106 ~~~p------~~v~~~-~lyWl~~~~~~~--~~~IvsfD~~~e~~~~i-~~P~~~~~~~~l~~~~g~L~~~~~~-~~~~~  174 (254)
                      ..++      ..+.++ .+|=+...+...  -..+-+||..+++|+.+ +++... ....++.++|.|.++++. ....+
T Consensus       412 a~m~~~r~~~gv~~~~g~iYi~GG~~~~~~~l~sve~YDP~t~~W~~~~~M~~~R-~~~g~a~~~~~iYvvGG~~~~~~~  490 (571)
T KOG4441|consen  412 APMLTRRSGHGVAVLGGKLYIIGGGDGSSNCLNSVECYDPETNTWTLIAPMNTRR-SGFGVAVLNGKIYVVGGFDGTSAL  490 (571)
T ss_pred             CCCCcceeeeEEEEECCEEEEEcCcCCCccccceEEEEcCCCCceeecCCccccc-ccceEEEECCEEEEECCccCCCcc
Confidence            8772      344666 888776543322  36899999999999987 344333 556789999999999942 21111


Q ss_pred             -EEEEECC-CcceEEEEEecCCCcceeeEEE-EeCCeEEEEeCcc--ccCCEEEEEECCCCcEEEEE
Q 039648          175 -EIWVMND-NKCWAKHLTLGPFFNFRINFGF-WKNDAFFIESNSR--IYGGCLFLHEHRTKEIKNLQ  236 (254)
Q Consensus       175 -~IW~l~~-~~~W~~~~~i~~~~~~~~~~~~-~~~g~i~l~~~~~--~~~~~~~~yd~~t~~~~~~~  236 (254)
                       .|=..+. ...|+.+..|....   ...++ .-++.+++.-+..  ..-..+-.||+++++|+...
T Consensus       491 ~~VE~ydp~~~~W~~v~~m~~~r---s~~g~~~~~~~ly~vGG~~~~~~l~~ve~ydp~~d~W~~~~  554 (571)
T KOG4441|consen  491 SSVERYDPETNQWTMVAPMTSPR---SAVGVVVLGGKLYAVGGFDGNNNLNTVECYDPETDTWTEVT  554 (571)
T ss_pred             ceEEEEcCCCCceeEcccCcccc---ccccEEEECCEEEEEecccCccccceeEEcCCCCCceeeCC
Confidence             1333333 68899985555332   11222 2245555543311  12356889999999999763

>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein

Probab=98.26  E-value=0.00031  Score=60.93  Aligned_cols=103  Identities=9%  Similarity=0.044  Sum_probs=69.0

Q ss_pred             cCeEEEEEccCCce----eeccccC------ceEEEE-EEEEEEEecC-CCceEEEEEECCCcceeEec-CCCCCCceeE
Q 039648           89 VPNVQVYGFRTNSW----REVHGHQ------LDRYFK-VCYWLVIADT-RDLKVILSFHMDNEVFEEIK-IPPHVNYYSS  155 (254)
Q Consensus        89 ~~~~~Vys~~~~~W----r~~~~~p------~~v~~~-~lyWl~~~~~-~~~~~IvsfD~~~e~~~~i~-~P~~~~~~~~  155 (254)
                      ...++.|+..++.|    +.+..+|      ..+.++ .+|=+..... .....+.+||+++++|+.++ +|........
T Consensus        87 ~~~v~~~d~~~~~w~~~~~~~~~lp~~~~~~~~~~~~~~iYv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~~r~~~~  166 (323)
T TIGR03548        87 FSSVYRITLDESKEELICETIGNLPFTFENGSACYKDGTLYVGGGNRNGKPSNKSYLFNLETQEWFELPDFPGEPRVQPV  166 (323)
T ss_pred             ceeEEEEEEcCCceeeeeeEcCCCCcCccCceEEEECCEEEEEeCcCCCccCceEEEEcCCCCCeeECCCCCCCCCCcce
Confidence            34688899998887    5665553      345667 8887754321 12357899999999999984 5642223445


Q ss_pred             EEEeCCeEEEEecCC-CCEEEEEEECC-CcceEEEEEe
Q 039648          156 ISLYEDSLSIVIPDA-EQCFEIWVMND-NKCWAKHLTL  191 (254)
Q Consensus       156 l~~~~g~L~~~~~~~-~~~~~IW~l~~-~~~W~~~~~i  191 (254)
                      .+..+++|.++.... ....++|+.+- ..+|+++..+
T Consensus       167 ~~~~~~~iYv~GG~~~~~~~~~~~yd~~~~~W~~~~~~  204 (323)
T TIGR03548       167 CVKLQNELYVFGGGSNIAYTDGYKYSPKKNQWQKVADP  204 (323)
T ss_pred             EEEECCEEEEEcCCCCccccceEEEecCCCeeEECCCC
Confidence            578899999998422 22346777775 6789987654

Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.

>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]

Probab=98.13  E-value=0.00033  Score=65.43  Aligned_cols=189  Identities=13%  Similarity=0.121  Sum_probs=121.2

Q ss_pred             EEEEcCcccccccCCCCCCCCCCCCCCCCcceEEEEeeCCCCCeEEEEEeeeeccccccCCCcCeEEEEEccCCceeecc
Q 039648           27 LTIWNPATREFRNLPNYKYCNSSNRLIPPSTFICLESDPINNDFKLLFVHNLWNEKRKRYGKVPNVQVYGFRTNSWREVH  106 (254)
Q Consensus        27 ~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~g~g~d~~~~~yKVv~~~~~~~~~~~~~~~~~~~~Vys~~~~~Wr~~~  106 (254)
                      ....||.+++|..+.+.+..+.         ..|.+.-.    =+|..++....    +......+++|+..++.|..+.
T Consensus       303 ve~yd~~~~~w~~~a~m~~~r~---------~~~~~~~~----~~lYv~GG~~~----~~~~l~~ve~YD~~~~~W~~~a  365 (571)
T KOG4441|consen  303 VECYDPKTNEWSSLAPMPSPRC---------RVGVAVLN----GKLYVVGGYDS----GSDRLSSVERYDPRTNQWTPVA  365 (571)
T ss_pred             eEEecCCcCcEeecCCCCcccc---------cccEEEEC----CEEEEEccccC----CCcccceEEEecCCCCceeccC
Confidence            4688999999999988875421         12222211    15555543210    1245568999999999999988


Q ss_pred             ccC------ceEEEE-EEEEEEEecC-CCceEEEEEECCCcceeEec-CCCCCCceeEEEEeCCeEEEEec-CCCC----
Q 039648          107 GHQ------LDRYFK-VCYWLVIADT-RDLKVILSFHMDNEVFEEIK-IPPHVNYYSSISLYEDSLSIVIP-DAEQ----  172 (254)
Q Consensus       107 ~~p------~~v~~~-~lyWl~~~~~-~~~~~IvsfD~~~e~~~~i~-~P~~~~~~~~l~~~~g~L~~~~~-~~~~----  172 (254)
                      .++      .-+.++ .+|=+...+. ..-..|-.+|.++++|.... ++... .....++++|+|+++++ ....    
T Consensus       366 ~M~~~R~~~~v~~l~g~iYavGG~dg~~~l~svE~YDp~~~~W~~va~m~~~r-~~~gv~~~~g~iYi~GG~~~~~~~l~  444 (571)
T KOG4441|consen  366 PMNTKRSDFGVAVLDGKLYAVGGFDGEKSLNSVECYDPVTNKWTPVAPMLTRR-SGHGVAVLGGKLYIIGGGDGSSNCLN  444 (571)
T ss_pred             CccCccccceeEEECCEEEEEeccccccccccEEEecCCCCcccccCCCCcce-eeeEEEEECCEEEEEcCcCCCccccc
Confidence            772      344666 8888765442 22357999999999999884 54422 56778999999999994 2122    


Q ss_pred             EEEEEEECCCcceEEEEEecCCCcceeeEEEEeCCeEEEEeCcc--ccCCEEEEEECCCCcEEEEE
Q 039648          173 CFEIWVMNDNKCWAKHLTLGPFFNFRINFGFWKNDAFFIESNSR--IYGGCLFLHEHRTKEIKNLQ  236 (254)
Q Consensus       173 ~~~IW~l~~~~~W~~~~~i~~~~~~~~~~~~~~~g~i~l~~~~~--~~~~~~~~yd~~t~~~~~~~  236 (254)
                      .++..--. ..+|+.+..|...... ..+++. +|.|+...+..  ..-..+-.||+++++|..+.
T Consensus       445 sve~YDP~-t~~W~~~~~M~~~R~~-~g~a~~-~~~iYvvGG~~~~~~~~~VE~ydp~~~~W~~v~  507 (571)
T KOG4441|consen  445 SVECYDPE-TNTWTLIAPMNTRRSG-FGVAVL-NGKIYVVGGFDGTSALSSVERYDPETNQWTMVA  507 (571)
T ss_pred             eEEEEcCC-CCceeecCCccccccc-ceEEEE-CCEEEEECCccCCCccceEEEEcCCCCceeEcc
Confidence            22222222 6899998777654421 123333 45566554421  01234788999999999884

>PHA03098 kelch-like protein; Provisional

Probab=97.91  E-value=0.001  Score=61.70  Aligned_cols=150  Identities=14%  Similarity=0.253  Sum_probs=94.5

Q ss_pred             cEEEEcCcccccccCCCCCCCCCCCCCCCCcceEEEEeeCCCCCeEEEEEeeeeccccccCCCcCeEEEEEccCCceeec
Q 039648           26 RLTIWNPATREFRNLPNYKYCNSSNRLIPPSTFICLESDPINNDFKLLFVHNLWNEKRKRYGKVPNVQVYGFRTNSWREV  105 (254)
Q Consensus        26 ~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~g~g~d~~~~~yKVv~~~~~~~~~~~~~~~~~~~~Vys~~~~~Wr~~  105 (254)
                      .+.++||.|++|..+|+.+..+       .... +..++     =+|..++.....    ......+++|+..+++|+.+
T Consensus       359 ~v~~yd~~~~~W~~~~~lp~~r-------~~~~-~~~~~-----~~iYv~GG~~~~----~~~~~~v~~yd~~t~~W~~~  421 (534)
T PHA03098        359 TVESWKPGESKWREEPPLIFPR-------YNPC-VVNVN-----NLIYVIGGISKN----DELLKTVECFSLNTNKWSKG  421 (534)
T ss_pred             eEEEEcCCCCceeeCCCcCcCC-------ccce-EEEEC-----CEEEEECCcCCC----CcccceEEEEeCCCCeeeec
Confidence            4688999999999998776531       0111 11222     145555431111    12245789999999999998


Q ss_pred             cccC------ceEEEE-EEEEEEEecCCC----ceEEEEEECCCcceeEec-CCCCCCceeEEEEeCCeEEEEecCC--C
Q 039648          106 HGHQ------LDRYFK-VCYWLVIADTRD----LKVILSFHMDNEVFEEIK-IPPHVNYYSSISLYEDSLSIVIPDA--E  171 (254)
Q Consensus       106 ~~~p------~~v~~~-~lyWl~~~~~~~----~~~IvsfD~~~e~~~~i~-~P~~~~~~~~l~~~~g~L~~~~~~~--~  171 (254)
                      ..+|      ..+..+ .+|=+.......    ...+.+||+++++|+.++ +|... ....+...+|+|.++++..  .
T Consensus       422 ~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~r-~~~~~~~~~~~iyv~GG~~~~~  500 (534)
T PHA03098        422 SPLPISHYGGCAIYHDGKIYVIGGISYIDNIKVYNIVESYNPVTNKWTELSSLNFPR-INASLCIFNNKIYVVGGDKYEY  500 (534)
T ss_pred             CCCCccccCceEEEECCEEEEECCccCCCCCcccceEEEecCCCCceeeCCCCCccc-ccceEEEECCEEEEEcCCcCCc
Confidence            7664      345667 888665322111    135899999999999884 33222 3445677899999988421  1


Q ss_pred             CEEEEEEECC-CcceEEEEEecC
Q 039648          172 QCFEIWVMND-NKCWAKHLTLGP  193 (254)
Q Consensus       172 ~~~~IW~l~~-~~~W~~~~~i~~  193 (254)
                      ..-.||+.+- ...|+.....|+
T Consensus       501 ~~~~v~~yd~~~~~W~~~~~~p~  523 (534)
T PHA03098        501 YINEIEVYDDKTNTWTLFCKFPK  523 (534)
T ss_pred             ccceeEEEeCCCCEEEecCCCcc
Confidence            1235777765 688998876554

>TIGR03547 muta_rot_YjhT mutatrotase, YjhT family

Probab=97.82  E-value=0.0088  Score=52.35  Aligned_cols=198  Identities=12%  Similarity=0.111  Sum_probs=112.0

Q ss_pred             cEEEEc--CcccccccCCCCCCCCCCCCCCCCcceEEEEeeCCCCCeEEEEEeeeecccccc-CCCcCeEEEEEccCCce
Q 039648           26 RLTIWN--PATREFRNLPNYKYCNSSNRLIPPSTFICLESDPINNDFKLLFVHNLWNEKRKR-YGKVPNVQVYGFRTNSW  102 (254)
Q Consensus        26 ~~~V~N--P~T~~~~~LP~~~~~~~~~~~~~~~~~~g~g~d~~~~~yKVv~~~~~~~~~~~~-~~~~~~~~Vys~~~~~W  102 (254)
                      ++++.+  |.+++|..+|+.+.. ++    . .. .....|     =||..+.......... ......++.|+..+++|
T Consensus        30 ~~~~~d~~~~~~~W~~l~~~p~~-~R----~-~~-~~~~~~-----~~iYv~GG~~~~~~~~~~~~~~~v~~Yd~~~~~W   97 (346)
T TIGR03547        30 SWYKLDLKKPSKGWQKIADFPGG-PR----N-QA-VAAAID-----GKLYVFGGIGKANSEGSPQVFDDVYRYDPKKNSW   97 (346)
T ss_pred             eeEEEECCCCCCCceECCCCCCC-Cc----c-cc-eEEEEC-----CEEEEEeCCCCCCCCCcceecccEEEEECCCCEE
Confidence            457777  477889999987632 11    0 11 111122     2566554321100000 01234689999999999


Q ss_pred             eecccc-C-----c-eE-EEE-EEEEEEEecCC-----------------------------------CceEEEEEECCC
Q 039648          103 REVHGH-Q-----L-DR-YFK-VCYWLVIADTR-----------------------------------DLKVILSFHMDN  138 (254)
Q Consensus       103 r~~~~~-p-----~-~v-~~~-~lyWl~~~~~~-----------------------------------~~~~IvsfD~~~  138 (254)
                      +.+..+ |     . .+ .++ .+|=+......                                   ....+.+||+.+
T Consensus        98 ~~~~~~~p~~~~~~~~~~~~~g~IYviGG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~YDp~t  177 (346)
T TIGR03547        98 QKLDTRSPVGLLGASGFSLHNGQAYFTGGVNKNIFDGYFADLSAADKDSEPKDKLIAAYFSQPPEDYFWNKNVLSYDPST  177 (346)
T ss_pred             ecCCCCCCCcccceeEEEEeCCEEEEEcCcChHHHHHHHhhHhhcCccchhhhhhHHHHhCCChhHcCccceEEEEECCC
Confidence            998643 3     1 22 457 89876432110                                   014699999999


Q ss_pred             cceeEe-cCCCCCCceeEEEEeCCeEEEEecC---CCCEEEEEEEC--C-CcceEEEEEecCCCc-----ceeeEEEEeC
Q 039648          139 EVFEEI-KIPPHVNYYSSISLYEDSLSIVIPD---AEQCFEIWVMN--D-NKCWAKHLTLGPFFN-----FRINFGFWKN  206 (254)
Q Consensus       139 e~~~~i-~~P~~~~~~~~l~~~~g~L~~~~~~---~~~~~~IW~l~--~-~~~W~~~~~i~~~~~-----~~~~~~~~~~  206 (254)
                      ++|+.+ ++|........++..+|+|.++...   .....++|..+  . ...|+++..|+....     ......+.-+
T Consensus       178 ~~W~~~~~~p~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~y~~~~~~~~W~~~~~m~~~r~~~~~~~~~~~a~~~~  257 (346)
T TIGR03547       178 NQWRNLGENPFLGTAGSAIVHKGNKLLLINGEIKPGLRTAEVKQYLFTGGKLEWNKLPPLPPPKSSSQEGLAGAFAGISN  257 (346)
T ss_pred             CceeECccCCCCcCCCceEEEECCEEEEEeeeeCCCccchheEEEEecCCCceeeecCCCCCCCCCccccccEEeeeEEC
Confidence            999998 4453221345677889999999842   12334566544  2 568998877653210     1111122346


Q ss_pred             CeEEEEeCccc--------------c-----CCEEEEEECCCCcEEEE
Q 039648          207 DAFFIESNSRI--------------Y-----GGCLFLHEHRTKEIKNL  235 (254)
Q Consensus       207 g~i~l~~~~~~--------------~-----~~~~~~yd~~t~~~~~~  235 (254)
                      |.|++.-....              .     -..+-.||+++++|+.+
T Consensus       258 ~~Iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~e~yd~~~~~W~~~  305 (346)
T TIGR03547       258 GVLLVAGGANFPGAQENYKNGKLYAHEGLIKAWSSEVYALDNGKWSKV  305 (346)
T ss_pred             CEEEEeecCCCCCchhhhhcCCccccCCCCceeEeeEEEecCCccccc
Confidence            67766543100              0     01466999999999876

Members of this protein family contain multiple copies of the beta-propeller-forming Kelch repeat. All are full-length homologs to YjhT of Escherichia coli, which has been identified as a mutarotase for sialic acid. This protein improves bacterial ability to obtain host sialic acid, and thus serves as a virulence factor. Some bacteria carry what appears to be a cyclically permuted homolog of this protein.

>PRK14131 N-acetylneuraminic acid mutarotase; Provisional

Probab=97.67  E-value=0.011  Score=52.59  Aligned_cols=215  Identities=11%  Similarity=0.079  Sum_probs=117.7

Q ss_pred             EeccCceEEEEEc-CCccEEEEcCc--ccccccCCCCCCCCCCCCCCCCcceEEEEeeCCCCCeEEEEEeeeecccccc-
Q 039648           10 VGYHDGLFCIMQS-STNRLTIWNPA--TREFRNLPNYKYCNSSNRLIPPSTFICLESDPINNDFKLLFVHNLWNEKRKR-   85 (254)
Q Consensus        10 ~~scnGLlcl~~~-~~~~~~V~NP~--T~~~~~LP~~~~~~~~~~~~~~~~~~g~g~d~~~~~yKVv~~~~~~~~~~~~-   85 (254)
                      ....++-|.+... ....+++.++.  +++|..+|+.+.. ++    .....+  ..+     =+|..+.......... 
T Consensus        34 ~~~~~~~iyv~gG~~~~~~~~~d~~~~~~~W~~l~~~p~~-~r----~~~~~v--~~~-----~~IYV~GG~~~~~~~~~  101 (376)
T PRK14131         34 GAIDNNTVYVGLGSAGTSWYKLDLNAPSKGWTKIAAFPGG-PR----EQAVAA--FID-----GKLYVFGGIGKTNSEGS  101 (376)
T ss_pred             EEEECCEEEEEeCCCCCeEEEEECCCCCCCeEECCcCCCC-Cc----ccceEE--EEC-----CEEEEEcCCCCCCCCCc
Confidence            3455666554332 22335777765  5789999876432 11    001111  111     1445543311000000 


Q ss_pred             CCCcCeEEEEEccCCceeecccc-C------ceEE-EE-EEEEEEEecCC------------------------------
Q 039648           86 YGKVPNVQVYGFRTNSWREVHGH-Q------LDRY-FK-VCYWLVIADTR------------------------------  126 (254)
Q Consensus        86 ~~~~~~~~Vys~~~~~Wr~~~~~-p------~~v~-~~-~lyWl~~~~~~------------------------------  126 (254)
                      ......+++|+..++.|+.+... |      ..+. .+ .||=+......                              
T Consensus       102 ~~~~~~v~~YD~~~n~W~~~~~~~p~~~~~~~~~~~~~~~IYv~GG~~~~~~~~~~~d~~~~~~~~~~~~~i~~~~~~~~  181 (376)
T PRK14131        102 PQVFDDVYKYDPKTNSWQKLDTRSPVGLAGHVAVSLHNGKAYITGGVNKNIFDGYFEDLAAAGKDKTPKDKINDAYFDKK  181 (376)
T ss_pred             eeEcccEEEEeCCCCEEEeCCCCCCCcccceEEEEeeCCEEEEECCCCHHHHHHHHhhhhhcccchhhhhhhHHHHhcCC
Confidence            01134689999999999998753 3      1233 56 88877542110                              


Q ss_pred             -----CceEEEEEECCCcceeEec-CCCCCCceeEEEEeCCeEEEEecC---CCCEEEEEEEC--C-CcceEEEEEecCC
Q 039648          127 -----DLKVILSFHMDNEVFEEIK-IPPHVNYYSSISLYEDSLSIVIPD---AEQCFEIWVMN--D-NKCWAKHLTLGPF  194 (254)
Q Consensus       127 -----~~~~IvsfD~~~e~~~~i~-~P~~~~~~~~l~~~~g~L~~~~~~---~~~~~~IW~l~--~-~~~W~~~~~i~~~  194 (254)
                           ....+..||+.+++|+.+. +|........++..+++|.++...   .....++|..+  . ...|+++..|+..
T Consensus       182 ~~~~~~~~~v~~YD~~t~~W~~~~~~p~~~~~~~a~v~~~~~iYv~GG~~~~~~~~~~~~~~~~~~~~~~W~~~~~~p~~  261 (376)
T PRK14131        182 PEDYFFNKEVLSYDPSTNQWKNAGESPFLGTAGSAVVIKGNKLWLINGEIKPGLRTDAVKQGKFTGNNLKWQKLPDLPPA  261 (376)
T ss_pred             hhhcCcCceEEEEECCCCeeeECCcCCCCCCCcceEEEECCEEEEEeeeECCCcCChhheEEEecCCCcceeecCCCCCC
Confidence                 0246999999999999874 553221334567789999999842   23455677543  2 5789998877542


Q ss_pred             Cc------ceeeEEEEeCCeEEEEeCccccC-------------------CEEEEEECCCCcEEEEE
Q 039648          195 FN------FRINFGFWKNDAFFIESNSRIYG-------------------GCLFLHEHRTKEIKNLQ  236 (254)
Q Consensus       195 ~~------~~~~~~~~~~g~i~l~~~~~~~~-------------------~~~~~yd~~t~~~~~~~  236 (254)
                      ..      ........-++.|++.-......                   ..+-.||+++++|+.+.
T Consensus       262 ~~~~~~~~~~~~~a~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~e~yd~~~~~W~~~~  328 (376)
T PRK14131        262 PGGSSQEGVAGAFAGYSNGVLLVAGGANFPGARENYQNGKLYAHEGLKKSWSDEIYALVNGKWQKVG  328 (376)
T ss_pred             CcCCcCCccceEeceeECCEEEEeeccCCCCChhhhhcCCcccccCCcceeehheEEecCCcccccC
Confidence            21      11111223456666554310000                   12457999999998663

>PLN02153 epithiospecifier protein

Probab=97.65  E-value=0.015  Score=50.91  Aligned_cols=146  Identities=10%  Similarity=0.137  Sum_probs=87.9

Q ss_pred             CeEEEEEccCCceeecccc---C-------ceEEEE-EEEEEEEecCC-CceEEEEEECCCcceeEec-C-----CCCCC
Q 039648           90 PNVQVYGFRTNSWREVHGH---Q-------LDRYFK-VCYWLVIADTR-DLKVILSFHMDNEVFEEIK-I-----PPHVN  151 (254)
Q Consensus        90 ~~~~Vys~~~~~Wr~~~~~---p-------~~v~~~-~lyWl~~~~~~-~~~~IvsfD~~~e~~~~i~-~-----P~~~~  151 (254)
                      ..+++|+..++.|+.+...   |       ..+.++ .||=+...... ....+.+||+++.+|+.++ +     |... 
T Consensus        50 ~~~~~yd~~~~~W~~~~~~~~~p~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~~~~~~p~~R-  128 (341)
T PLN02153         50 KDLYVFDFNTHTWSIAPANGDVPRISCLGVRMVAVGTKLYIFGGRDEKREFSDFYSYDTVKNEWTFLTKLDEEGGPEAR-  128 (341)
T ss_pred             CcEEEEECCCCEEEEcCccCCCCCCccCceEEEEECCEEEEECCCCCCCccCcEEEEECCCCEEEEeccCCCCCCCCCc-
Confidence            4688999999999987643   2       124556 88766432211 1246889999999999874 2     2222 


Q ss_pred             ceeEEEEeCCeEEEEecCCC--------CEEEEEEECC-CcceEEEEEecCC--CcceeeEEEEeCCeEEEEeCcc----
Q 039648          152 YYSSISLYEDSLSIVIPDAE--------QCFEIWVMND-NKCWAKHLTLGPF--FNFRINFGFWKNDAFFIESNSR----  216 (254)
Q Consensus       152 ~~~~l~~~~g~L~~~~~~~~--------~~~~IW~l~~-~~~W~~~~~i~~~--~~~~~~~~~~~~g~i~l~~~~~----  216 (254)
                      .....+..+++|.++.....        ..-++|+++- ..+|+++-.+...  ......+.+. ++.|++.-...    
T Consensus       129 ~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~v~~yd~~~~~W~~l~~~~~~~~~r~~~~~~~~-~~~iyv~GG~~~~~~  207 (341)
T PLN02153        129 TFHSMASDENHVYVFGGVSKGGLMKTPERFRTIEAYNIADGKWVQLPDPGENFEKRGGAGFAVV-QGKIWVVYGFATSIL  207 (341)
T ss_pred             eeeEEEEECCEEEEECCccCCCccCCCcccceEEEEECCCCeEeeCCCCCCCCCCCCcceEEEE-CCeEEEEeccccccc
Confidence            34566788999988874211        1125677665 6789986543211  1011122222 45555532100    


Q ss_pred             ------ccCCEEEEEECCCCcEEEEEE
Q 039648          217 ------IYGGCLFLHEHRTKEIKNLQV  237 (254)
Q Consensus       217 ------~~~~~~~~yd~~t~~~~~~~~  237 (254)
                            .....+..||+++++|..+..
T Consensus       208 ~gG~~~~~~~~v~~yd~~~~~W~~~~~  234 (341)
T PLN02153        208 PGGKSDYESNAVQFFDPASGKWTEVET  234 (341)
T ss_pred             cCCccceecCceEEEEcCCCcEEeccc
Confidence                  002458899999999998864

>PHA02790 Kelch-like protein; Provisional

Probab=97.63  E-value=0.0024  Score=58.58  Aligned_cols=136  Identities=6%  Similarity=0.022  Sum_probs=91.5

Q ss_pred             cCeEEEEEccCCceeeccccC------ceEEEE-EEEEEEEecCCCceEEEEEECCCcceeEe-cCCCCCCceeEEEEeC
Q 039648           89 VPNVQVYGFRTNSWREVHGHQ------LDRYFK-VCYWLVIADTRDLKVILSFHMDNEVFEEI-KIPPHVNYYSSISLYE  160 (254)
Q Consensus        89 ~~~~~Vys~~~~~Wr~~~~~p------~~v~~~-~lyWl~~~~~~~~~~IvsfD~~~e~~~~i-~~P~~~~~~~~l~~~~  160 (254)
                      ...++.|+..+++|..+..+|      ..+.++ .+|=+...+.  ...+-.+|..+++|..+ ++|... .....+.++
T Consensus       286 ~~~v~~Ydp~~~~W~~~~~m~~~r~~~~~v~~~~~iYviGG~~~--~~sve~ydp~~n~W~~~~~l~~~r-~~~~~~~~~  362 (480)
T PHA02790        286 HNNAIAVNYISNNWIPIPPMNSPRLYASGVPANNKLYVVGGLPN--PTSVERWFHGDAAWVNMPSLLKPR-CNPAVASIN  362 (480)
T ss_pred             CCeEEEEECCCCEEEECCCCCchhhcceEEEECCEEEEECCcCC--CCceEEEECCCCeEEECCCCCCCC-cccEEEEEC
Confidence            456888999999999998773      456778 9998765432  24578999999999887 344333 445678999


Q ss_pred             CeEEEEecC--CCCEEEEEEECCCcceEEEEEecCCCcceeeEEEEeCCeEEEEeCccccCCEEEEEECCCCcEEEEE
Q 039648          161 DSLSIVIPD--AEQCFEIWVMNDNKCWAKHLTLGPFFNFRINFGFWKNDAFFIESNSRIYGGCLFLHEHRTKEIKNLQ  236 (254)
Q Consensus       161 g~L~~~~~~--~~~~~~IW~l~~~~~W~~~~~i~~~~~~~~~~~~~~~g~i~l~~~~~~~~~~~~~yd~~t~~~~~~~  236 (254)
                      |+|.++++.  ....++.+-.+ ...|+....++...  .....+.-+|.|++.-+      ..-.||+++++|+.+.
T Consensus       363 g~IYviGG~~~~~~~ve~ydp~-~~~W~~~~~m~~~r--~~~~~~~~~~~IYv~GG------~~e~ydp~~~~W~~~~  431 (480)
T PHA02790        363 NVIYVIGGHSETDTTTEYLLPN-HDQWQFGPSTYYPH--YKSCALVFGRRLFLVGR------NAEFYCESSNTWTLID  431 (480)
T ss_pred             CEEEEecCcCCCCccEEEEeCC-CCEEEeCCCCCCcc--ccceEEEECCEEEEECC------ceEEecCCCCcEeEcC
Confidence            999999842  22345555433 58899865444221  11222234666766543      3678999999999763

>PLN02193 nitrile-specifier protein

Probab=97.50  E-value=0.0058  Score=55.95  Aligned_cols=150  Identities=6%  Similarity=0.090  Sum_probs=93.0

Q ss_pred             cEEEEcCcccccccCCCCCCC-CCCCCCCCCcceEEEEeeCCCCCeEEEEEeeeeccccccCCCcCeEEEEEccCCceee
Q 039648           26 RLTIWNPATREFRNLPNYKYC-NSSNRLIPPSTFICLESDPINNDFKLLFVHNLWNEKRKRYGKVPNVQVYGFRTNSWRE  104 (254)
Q Consensus        26 ~~~V~NP~T~~~~~LP~~~~~-~~~~~~~~~~~~~g~g~d~~~~~yKVv~~~~~~~~~~~~~~~~~~~~Vys~~~~~Wr~  104 (254)
                      +++++||.|.+|..+++.... .++     ..+.+ ..++     =|++.+.....     ......+++|+..++.|+.
T Consensus       245 dv~~yD~~t~~W~~l~~~~~~P~~R-----~~h~~-~~~~-----~~iYv~GG~~~-----~~~~~~~~~yd~~t~~W~~  308 (470)
T PLN02193        245 GFYSFDTTTNEWKLLTPVEEGPTPR-----SFHSM-AADE-----ENVYVFGGVSA-----TARLKTLDSYNIVDKKWFH  308 (470)
T ss_pred             cEEEEECCCCEEEEcCcCCCCCCCc-----cceEE-EEEC-----CEEEEECCCCC-----CCCcceEEEEECCCCEEEe
Confidence            579999999999999765321 111     11111 1111     24555543211     1223468899999999998


Q ss_pred             cccc---C------ceEEEE-EEEEEEEecCCCceEEEEEECCCcceeEecC----CCCCCceeEEEEeCCeEEEEecCC
Q 039648          105 VHGH---Q------LDRYFK-VCYWLVIADTRDLKVILSFHMDNEVFEEIKI----PPHVNYYSSISLYEDSLSIVIPDA  170 (254)
Q Consensus       105 ~~~~---p------~~v~~~-~lyWl~~~~~~~~~~IvsfD~~~e~~~~i~~----P~~~~~~~~l~~~~g~L~~~~~~~  170 (254)
                      +..+   |      ..+.++ .+|-+..........+..||+++++|+.++.    |... .....+..+++|.++....
T Consensus       309 ~~~~~~~~~~R~~~~~~~~~gkiyviGG~~g~~~~dv~~yD~~t~~W~~~~~~g~~P~~R-~~~~~~~~~~~iyv~GG~~  387 (470)
T PLN02193        309 CSTPGDSFSIRGGAGLEVVQGKVWVVYGFNGCEVDDVHYYDPVQDKWTQVETFGVRPSER-SVFASAAVGKHIVIFGGEI  387 (470)
T ss_pred             CCCCCCCCCCCCCcEEEEECCcEEEEECCCCCccCceEEEECCCCEEEEeccCCCCCCCc-ceeEEEEECCEEEEECCcc
Confidence            7653   1      234566 8876653221123569999999999998842    3222 3455678899999888421


Q ss_pred             C---------CE--EEEEEECC-CcceEEEEEec
Q 039648          171 E---------QC--FEIWVMND-NKCWAKHLTLG  192 (254)
Q Consensus       171 ~---------~~--~~IW~l~~-~~~W~~~~~i~  192 (254)
                      .         ..  -++|.++- ...|+++..++
T Consensus       388 ~~~~~~~~~~~~~~ndv~~~D~~t~~W~~~~~~~  421 (470)
T PLN02193        388 AMDPLAHVGPGQLTDGTFALDTETLQWERLDKFG  421 (470)
T ss_pred             CCccccccCccceeccEEEEEcCcCEEEEcccCC
Confidence            1         11  26999987 77899876554

>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein

Probab=97.33  E-value=0.019  Score=49.81  Aligned_cols=134  Identities=8%  Similarity=0.067  Sum_probs=83.1

Q ss_pred             ceeeccccC------ceEEEE-EEEEEEEecC-CCceEEEEEECCCcce----eEe-cCCCCCCceeEEEEeCCeEEEEe
Q 039648          101 SWREVHGHQ------LDRYFK-VCYWLVIADT-RDLKVILSFHMDNEVF----EEI-KIPPHVNYYSSISLYEDSLSIVI  167 (254)
Q Consensus       101 ~Wr~~~~~p------~~v~~~-~lyWl~~~~~-~~~~~IvsfD~~~e~~----~~i-~~P~~~~~~~~l~~~~g~L~~~~  167 (254)
                      .|+.+..+|      ..+.++ .+|-+..... .....+..||+.+++|    ..+ ++|... .....+..+|+|.++.
T Consensus        52 ~W~~~~~lp~~r~~~~~~~~~~~lyviGG~~~~~~~~~v~~~d~~~~~w~~~~~~~~~lp~~~-~~~~~~~~~~~iYv~G  130 (323)
T TIGR03548        52 KWVKDGQLPYEAAYGASVSVENGIYYIGGSNSSERFSSVYRITLDESKEELICETIGNLPFTF-ENGSACYKDGTLYVGG  130 (323)
T ss_pred             eEEEcccCCccccceEEEEECCEEEEEcCCCCCCCceeEEEEEEcCCceeeeeeEcCCCCcCc-cCceEEEECCEEEEEe
Confidence            699887664      456778 9998864322 1235788999999987    333 333322 3456678899999998


Q ss_pred             cC--CCCEEEEEEECC-CcceEEEEEecCCCcceeeEEEEeCCeEEEEeCcc-ccCCEEEEEECCCCcEEEEE
Q 039648          168 PD--AEQCFEIWVMND-NKCWAKHLTLGPFFNFRINFGFWKNDAFFIESNSR-IYGGCLFLHEHRTKEIKNLQ  236 (254)
Q Consensus       168 ~~--~~~~~~IW~l~~-~~~W~~~~~i~~~~~~~~~~~~~~~g~i~l~~~~~-~~~~~~~~yd~~t~~~~~~~  236 (254)
                      ..  ....-++|+++- ..+|+++..++... -.....+..++.|++.-... .....+..||+++++|+.+.
T Consensus       131 G~~~~~~~~~v~~yd~~~~~W~~~~~~p~~~-r~~~~~~~~~~~iYv~GG~~~~~~~~~~~yd~~~~~W~~~~  202 (323)
T TIGR03548       131 GNRNGKPSNKSYLFNLETQEWFELPDFPGEP-RVQPVCVKLQNELYVFGGGSNIAYTDGYKYSPKKNQWQKVA  202 (323)
T ss_pred             CcCCCccCceEEEEcCCCCCeeECCCCCCCC-CCcceEEEECCEEEEEcCCCCccccceEEEecCCCeeEECC
Confidence            42  122346788776 67899876554221 11222233456676664311 00124679999999999875

Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.

>TIGR03547 muta_rot_YjhT mutatrotase, YjhT family

Probab=96.62  E-value=0.16  Score=44.40  Aligned_cols=126  Identities=15%  Similarity=0.216  Sum_probs=76.3

Q ss_pred             cEEEEcCcccccccCCCCCCCCCCCCCCCCcceEEEEeeCCCCCeEEEEEeeeeccccccCCCcCeEEEEEc--cCCcee
Q 039648           26 RLTIWNPATREFRNLPNYKYCNSSNRLIPPSTFICLESDPINNDFKLLFVHNLWNEKRKRYGKVPNVQVYGF--RTNSWR  103 (254)
Q Consensus        26 ~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~g~g~d~~~~~yKVv~~~~~~~~~~~~~~~~~~~~Vys~--~~~~Wr  103 (254)
                      .+.++||.|.+|..+++.+.. ++      .......++     =||..+......    ......+++|+.  +++.|.
T Consensus       169 ~v~~YDp~t~~W~~~~~~p~~-~r------~~~~~~~~~-----~~iyv~GG~~~~----~~~~~~~~~y~~~~~~~~W~  232 (346)
T TIGR03547       169 NVLSYDPSTNQWRNLGENPFL-GT------AGSAIVHKG-----NKLLLINGEIKP----GLRTAEVKQYLFTGGKLEWN  232 (346)
T ss_pred             eEEEEECCCCceeECccCCCC-cC------CCceEEEEC-----CEEEEEeeeeCC----CccchheEEEEecCCCceee
Confidence            468999999999999876532 11      111111222     256665432111    112234556665  567999


Q ss_pred             eccccC--c-----------eEEEE-EEEEEEEecCC------------------CceEEEEEECCCcceeEe-cCCCCC
Q 039648          104 EVHGHQ--L-----------DRYFK-VCYWLVIADTR------------------DLKVILSFHMDNEVFEEI-KIPPHV  150 (254)
Q Consensus       104 ~~~~~p--~-----------~v~~~-~lyWl~~~~~~------------------~~~~IvsfD~~~e~~~~i-~~P~~~  150 (254)
                      .+..+|  .           .+.++ .||-+......                  ....+-.||.++++|+.+ ++|...
T Consensus       233 ~~~~m~~~r~~~~~~~~~~~a~~~~~~Iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~e~yd~~~~~W~~~~~lp~~~  312 (346)
T TIGR03547       233 KLPPLPPPKSSSQEGLAGAFAGISNGVLLVAGGANFPGAQENYKNGKLYAHEGLIKAWSSEVYALDNGKWSKVGKLPQGL  312 (346)
T ss_pred             ecCCCCCCCCCccccccEEeeeEECCEEEEeecCCCCCchhhhhcCCccccCCCCceeEeeEEEecCCcccccCCCCCCc
Confidence            887663  1           24567 89877543210                  012577899999999887 555543


Q ss_pred             CceeEEEEeCCeEEEEec
Q 039648          151 NYYSSISLYEDSLSIVIP  168 (254)
Q Consensus       151 ~~~~~l~~~~g~L~~~~~  168 (254)
                       .....+.++|+|.++..
T Consensus       313 -~~~~~~~~~~~iyv~GG  329 (346)
T TIGR03547       313 -AYGVSVSWNNGVLLIGG  329 (346)
T ss_pred             -eeeEEEEcCCEEEEEec
Confidence             34556788999999994

Members of this protein family contain multiple copies of the beta-propeller-forming Kelch repeat. All are full-length homologs to YjhT of Escherichia coli, which has been identified as a mutarotase for sialic acid. This protein improves bacterial ability to obtain host sialic acid, and thus serves as a virulence factor. Some bacteria carry what appears to be a cyclically permuted homolog of this protein.

>KOG1230 consensus Protein containing repeated kelch motifs [General function prediction only]

Probab=96.60  E-value=0.16  Score=44.95  Aligned_cols=202  Identities=11%  Similarity=0.157  Sum_probs=108.7

Q ss_pred             cEEEEcCcccccccCCCCCCCCCCCCCCCCcceEEEEeeCCCCCeEEEEEee-eeccccccC--CCcCeEEEEEccCCce
Q 039648           26 RLTIWNPATREFRNLPNYKYCNSSNRLIPPSTFICLESDPINNDFKLLFVHN-LWNEKRKRY--GKVPNVQVYGFRTNSW  102 (254)
Q Consensus        26 ~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~g~g~d~~~~~yKVv~~~~-~~~~~~~~~--~~~~~~~Vys~~~~~W  102 (254)
                      ++|.+|--+.+|+++-.+....|+    . .  +..+..|+.    ++.++. .+.+ |...  .+-...-+|++.++.|
T Consensus        99 dLy~Yn~k~~eWkk~~spn~P~pR----s-s--hq~va~~s~----~l~~fGGEfaS-Pnq~qF~HYkD~W~fd~~trkw  166 (521)
T KOG1230|consen   99 DLYSYNTKKNEWKKVVSPNAPPPR----S-S--HQAVAVPSN----ILWLFGGEFAS-PNQEQFHHYKDLWLFDLKTRKW  166 (521)
T ss_pred             eeeEEeccccceeEeccCCCcCCC----c-c--ceeEEeccC----eEEEeccccCC-cchhhhhhhhheeeeeeccchh
Confidence            579999999999998443332222    1 1  122222332    233321 1111 1111  1123467899999999


Q ss_pred             eecccc--C------ceEEEE-EEEEEEEecCCC-----ceEEEEEECCCcceeEecCCCCCC---ceeEEEEe-CCeEE
Q 039648          103 REVHGH--Q------LDRYFK-VCYWLVIADTRD-----LKVILSFHMDNEVFEEIKIPPHVN---YYSSISLY-EDSLS  164 (254)
Q Consensus       103 r~~~~~--p------~~v~~~-~lyWl~~~~~~~-----~~~IvsfD~~~e~~~~i~~P~~~~---~~~~l~~~-~g~L~  164 (254)
                      ..+...  |      +-|... .|--....+...     -.-+.+||+++=+|+.+..+....   ..+.+... +|.+.
T Consensus       167 eql~~~g~PS~RSGHRMvawK~~lilFGGFhd~nr~y~YyNDvy~FdLdtykW~Klepsga~PtpRSGcq~~vtpqg~i~  246 (521)
T KOG1230|consen  167 EQLEFGGGPSPRSGHRMVAWKRQLILFGGFHDSNRDYIYYNDVYAFDLDTYKWSKLEPSGAGPTPRSGCQFSVTPQGGIV  246 (521)
T ss_pred             eeeccCCCCCCCccceeEEeeeeEEEEcceecCCCceEEeeeeEEEeccceeeeeccCCCCCCCCCCcceEEecCCCcEE
Confidence            998766  3      223222 221111111111     136899999999999996544211   33455555 88888


Q ss_pred             EEec-----------CCCCEEEEEEECC------CcceEEEEEec--CCCcceeeEEEEeCCe-EEEEeCcc--------
Q 039648          165 IVIP-----------DAEQCFEIWVMND------NKCWAKHLTLG--PFFNFRINFGFWKNDA-FFIESNSR--------  216 (254)
Q Consensus       165 ~~~~-----------~~~~~~~IW~l~~------~~~W~~~~~i~--~~~~~~~~~~~~~~g~-i~l~~~~~--------  216 (254)
                      +.+.           .....-++|.|+.      +=.|+++....  |.+....-+++++++. +++---..        
T Consensus       247 vyGGYsK~~~kK~~dKG~~hsDmf~L~p~~~~~dKw~W~kvkp~g~kPspRsgfsv~va~n~kal~FGGV~D~eeeeEsl  326 (521)
T KOG1230|consen  247 VYGGYSKQRVKKDVDKGTRHSDMFLLKPEDGREDKWVWTKVKPSGVKPSPRSGFSVAVAKNHKALFFGGVCDLEEEEESL  326 (521)
T ss_pred             EEcchhHhhhhhhhhcCceeeeeeeecCCcCCCcceeEeeccCCCCCCCCCCceeEEEecCCceEEecceecccccchhh
Confidence            7773           1234568999996      23566665544  2222333345555443 22211000        


Q ss_pred             --ccCCEEEEEECCCCcEEEEEEcC
Q 039648          217 --IYGGCLFLHEHRTKEIKNLQVTN  239 (254)
Q Consensus       217 --~~~~~~~~yd~~t~~~~~~~~~~  239 (254)
                        .....|+.||+..++|...++++
T Consensus       327 ~g~F~NDLy~fdlt~nrW~~~qlq~  351 (521)
T KOG1230|consen  327 SGEFFNDLYFFDLTRNRWSEGQLQG  351 (521)
T ss_pred             hhhhhhhhhheecccchhhHhhhcc
Confidence              00245899999999998777765

>KOG4693 consensus Uncharacterized conserved protein, contains kelch repeat [General function prediction only]

Probab=96.59  E-value=0.079  Score=44.22  Aligned_cols=207  Identities=12%  Similarity=0.139  Sum_probs=111.8

Q ss_pred             ccEEEEcCcccccccCCCC--CCCCCCCCCCCCcceEEEEeeCCCCCeEEEEEeee---eccccccCCCcCeEEEEEccC
Q 039648           25 NRLTIWNPATREFRNLPNY--KYCNSSNRLIPPSTFICLESDPINNDFKLLFVHNL---WNEKRKRYGKVPNVQVYGFRT   99 (254)
Q Consensus        25 ~~~~V~NP~T~~~~~LP~~--~~~~~~~~~~~~~~~~g~g~d~~~~~yKVv~~~~~---~~~~~~~~~~~~~~~Vys~~~   99 (254)
                      .+..|.|-.+-+|.++|+.  ....+.-+....+..+|         +.||.+...   ++...++........-|+-++
T Consensus        44 iDVH~lNa~~~RWtk~pp~~~ka~i~~~yp~VPyqRYG---------HtvV~y~d~~yvWGGRND~egaCN~Ly~fDp~t  114 (392)
T KOG4693|consen   44 IDVHVLNAENYRWTKMPPGITKATIESPYPAVPYQRYG---------HTVVEYQDKAYVWGGRNDDEGACNLLYEFDPET  114 (392)
T ss_pred             ceeEEeeccceeEEecCcccccccccCCCCccchhhcC---------ceEEEEcceEEEEcCccCcccccceeeeecccc
Confidence            4579999999999999983  22111100011122222         233333221   111111123344566788899


Q ss_pred             Cceeecccc---C------ceEEEE-EEEEEEEecCCC---ceEEEEEECCCcceeEecC---CCCCCceeEEEEeCCeE
Q 039648          100 NSWREVHGH---Q------LDRYFK-VCYWLVIADTRD---LKVILSFHMDNEVFEEIKI---PPHVNYYSSISLYEDSL  163 (254)
Q Consensus       100 ~~Wr~~~~~---p------~~v~~~-~lyWl~~~~~~~---~~~IvsfD~~~e~~~~i~~---P~~~~~~~~l~~~~g~L  163 (254)
                      +.|+.....   |      +...++ .+|=...-....   ..-+-+||+++-+|+.+.-   |+....+..-..+++.+
T Consensus       115 ~~W~~p~v~G~vPgaRDGHsAcV~gn~MyiFGGye~~a~~FS~d~h~ld~~TmtWr~~~Tkg~PprwRDFH~a~~~~~~M  194 (392)
T KOG4693|consen  115 NVWKKPEVEGFVPGARDGHSACVWGNQMYIFGGYEEDAQRFSQDTHVLDFATMTWREMHTKGDPPRWRDFHTASVIDGMM  194 (392)
T ss_pred             ccccccceeeecCCccCCceeeEECcEEEEecChHHHHHhhhccceeEeccceeeeehhccCCCchhhhhhhhhhccceE
Confidence            999875433   3      445556 777554221111   1368889999999999843   43322334445667777


Q ss_pred             EEEecC-----------CCCEEEEEEECC-CcceEEEEEecCCCcceeeE-EEEeCCeEEEEeCc---c-ccCCEEEEEE
Q 039648          164 SIVIPD-----------AEQCFEIWVMND-NKCWAKHLTLGPFFNFRINF-GFWKNDAFFIESNS---R-IYGGCLFLHE  226 (254)
Q Consensus       164 ~~~~~~-----------~~~~~~IW~l~~-~~~W~~~~~i~~~~~~~~~~-~~~~~g~i~l~~~~---~-~~~~~~~~yd  226 (254)
                      .+....           +.-.-.|-.|+- .+.|.....-+..+.-.+-- .+.-+|++++--.-   . +.-..+..||
T Consensus       195 YiFGGR~D~~gpfHs~~e~Yc~~i~~ld~~T~aW~r~p~~~~~P~GRRSHS~fvYng~~Y~FGGYng~ln~HfndLy~Fd  274 (392)
T KOG4693|consen  195 YIFGGRSDESGPFHSIHEQYCDTIMALDLATGAWTRTPENTMKPGGRRSHSTFVYNGKMYMFGGYNGTLNVHFNDLYCFD  274 (392)
T ss_pred             EEeccccccCCCccchhhhhcceeEEEeccccccccCCCCCcCCCcccccceEEEcceEEEecccchhhhhhhcceeecc
Confidence            777631           111234555554 67888763222112111111 12235665543220   0 1234689999


Q ss_pred             CCCCcEEEEEEcCc
Q 039648          227 HRTKEIKNLQVTNP  240 (254)
Q Consensus       227 ~~t~~~~~~~~~~~  240 (254)
                      ++|..|+.+..+|.
T Consensus       275 P~t~~W~~I~~~Gk  288 (392)
T KOG4693|consen  275 PKTSMWSVISVRGK  288 (392)
T ss_pred             cccchheeeeccCC
Confidence            99999999988875

>PRK14131 N-acetylneuraminic acid mutarotase; Provisional

Probab=96.55  E-value=0.14  Score=45.41  Aligned_cols=144  Identities=10%  Similarity=0.137  Sum_probs=82.9

Q ss_pred             cEEEEcCcccccccCCCCCCCCCCCCCCCCcceEEEEeeCCCCCeEEEEEeeeeccccccCCCcCeEEE--EEccCCcee
Q 039648           26 RLTIWNPATREFRNLPNYKYCNSSNRLIPPSTFICLESDPINNDFKLLFVHNLWNEKRKRYGKVPNVQV--YGFRTNSWR  103 (254)
Q Consensus        26 ~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~g~g~d~~~~~yKVv~~~~~~~~~~~~~~~~~~~~V--ys~~~~~Wr  103 (254)
                      ++.++||.|.+|..+++.|... +      ........+     -||..+......    ......+.+  |+.+++.|.
T Consensus       190 ~v~~YD~~t~~W~~~~~~p~~~-~------~~~a~v~~~-----~~iYv~GG~~~~----~~~~~~~~~~~~~~~~~~W~  253 (376)
T PRK14131        190 EVLSYDPSTNQWKNAGESPFLG-T------AGSAVVIKG-----NKLWLINGEIKP----GLRTDAVKQGKFTGNNLKWQ  253 (376)
T ss_pred             eEEEEECCCCeeeECCcCCCCC-C------CcceEEEEC-----CEEEEEeeeECC----CcCChhheEEEecCCCccee
Confidence            4799999999999998765421 1      111111222     366666542111    111222333  455678999


Q ss_pred             eccccC--c------------eEEEE-EEEEEEEecCCC------------------ceEEEEEECCCcceeEe-cCCCC
Q 039648          104 EVHGHQ--L------------DRYFK-VCYWLVIADTRD------------------LKVILSFHMDNEVFEEI-KIPPH  149 (254)
Q Consensus       104 ~~~~~p--~------------~v~~~-~lyWl~~~~~~~------------------~~~IvsfD~~~e~~~~i-~~P~~  149 (254)
                      .+..+|  +            .+.++ .||-+.......                  ...+-.||+++.+|+.+ ++|..
T Consensus       254 ~~~~~p~~~~~~~~~~~~~~~a~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~e~yd~~~~~W~~~~~lp~~  333 (376)
T PRK14131        254 KLPDLPPAPGGSSQEGVAGAFAGYSNGVLLVAGGANFPGARENYQNGKLYAHEGLKKSWSDEIYALVNGKWQKVGELPQG  333 (376)
T ss_pred             ecCCCCCCCcCCcCCccceEeceeECCEEEEeeccCCCCChhhhhcCCcccccCCcceeehheEEecCCcccccCcCCCC
Confidence            887663  1            24567 888665322100                  01345799999999877 45544


Q ss_pred             CCceeEEEEeCCeEEEEecC---CCCEEEEEEECC-CcceE
Q 039648          150 VNYYSSISLYEDSLSIVIPD---AEQCFEIWVMND-NKCWA  186 (254)
Q Consensus       150 ~~~~~~l~~~~g~L~~~~~~---~~~~~~IW~l~~-~~~W~  186 (254)
                      . .....+.++|+|.++...   ....-+|+.++. ++.|+
T Consensus       334 r-~~~~av~~~~~iyv~GG~~~~~~~~~~v~~~~~~~~~~~  373 (376)
T PRK14131        334 L-AYGVSVSWNNGVLLIGGETAGGKAVSDVTLLSWDGKKLT  373 (376)
T ss_pred             c-cceEEEEeCCEEEEEcCCCCCCcEeeeEEEEEEcCCEEE
Confidence            3 334567889999999942   234456777664 34443

>KOG0379 consensus Kelch repeat-containing proteins [General function prediction only]

Probab=95.06  E-value=2.6  Score=38.81  Aligned_cols=152  Identities=13%  Similarity=0.167  Sum_probs=93.7

Q ss_pred             cEEEEcCcccccccCCCCCCCCCCCCCCCCcceEEEEeeCCCCCeEEEEEeeeeccccccCCCcCeEEEEEccCCceeec
Q 039648           26 RLTIWNPATREFRNLPNYKYCNSSNRLIPPSTFICLESDPINNDFKLLFVHNLWNEKRKRYGKVPNVQVYGFRTNSWREV  105 (254)
Q Consensus        26 ~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~g~g~d~~~~~yKVv~~~~~~~~~~~~~~~~~~~~Vys~~~~~Wr~~  105 (254)
                      ++...|+.|++|..+.+.....+.    ...+ ...+++     =||+.+......    ......+.||+.++..|.++
T Consensus       140 ~l~~~d~~t~~W~~l~~~~~~P~~----r~~H-s~~~~g-----~~l~vfGG~~~~----~~~~ndl~i~d~~~~~W~~~  205 (482)
T KOG0379|consen  140 ELHSLDLSTRTWSLLSPTGDPPPP----RAGH-SATVVG-----TKLVVFGGIGGT----GDSLNDLHIYDLETSTWSEL  205 (482)
T ss_pred             heEeccCCCCcEEEecCcCCCCCC----cccc-eEEEEC-----CEEEEECCccCc----ccceeeeeeeccccccceec
Confidence            689999999999998664432111    1111 122222     134444321111    12466899999999999998


Q ss_pred             ccc---C-----ceEEEE-EEEEEEEecC-CC--ceEEEEEECCCcceeEec----CCCCCCceeEEEEeCCeEEEEecC
Q 039648          106 HGH---Q-----LDRYFK-VCYWLVIADT-RD--LKVILSFHMDNEVFEEIK----IPPHVNYYSSISLYEDSLSIVIPD  169 (254)
Q Consensus       106 ~~~---p-----~~v~~~-~lyWl~~~~~-~~--~~~IvsfD~~~e~~~~i~----~P~~~~~~~~l~~~~g~L~~~~~~  169 (254)
                      ...   |     ..+.+- .-+|+..... ..  -.-+..||+.+.+|..++    .|... ....++..+..+.++...
T Consensus       206 ~~~g~~P~pR~gH~~~~~~~~~~v~gG~~~~~~~l~D~~~ldl~~~~W~~~~~~g~~p~~R-~~h~~~~~~~~~~l~gG~  284 (482)
T KOG0379|consen  206 DTQGEAPSPRYGHAMVVVGNKLLVFGGGDDGDVYLNDVHILDLSTWEWKLLPTGGDLPSPR-SGHSLTVSGDHLLLFGGG  284 (482)
T ss_pred             ccCCCCCCCCCCceEEEECCeEEEEeccccCCceecceEeeecccceeeeccccCCCCCCc-ceeeeEEECCEEEEEcCC
Confidence            766   2     223333 5555544332 11  257899999999888442    22222 456667778888888842


Q ss_pred             CC----CEEEEEEECC-CcceEEEEEec
Q 039648          170 AE----QCFEIWVMND-NKCWAKHLTLG  192 (254)
Q Consensus       170 ~~----~~~~IW~l~~-~~~W~~~~~i~  192 (254)
                      ..    .--+.|.|+. ...|++.....
T Consensus       285 ~~~~~~~l~~~~~l~~~~~~w~~~~~~~  312 (482)
T KOG0379|consen  285 TDPKQEPLGDLYGLDLETLVWSKVESVG  312 (482)
T ss_pred             cccccccccccccccccccceeeeeccc
Confidence            22    4678899887 78999988777

>KOG0379 consensus Kelch repeat-containing proteins [General function prediction only]

Probab=95.05  E-value=2.2  Score=39.34  Aligned_cols=148  Identities=13%  Similarity=0.172  Sum_probs=94.9

Q ss_pred             eEEEEEccCCceeecccc---C------ceEEEE-EEEEEEEecC--CCceEEEEEECCCcceeEecC----CCCCCcee
Q 039648           91 NVQVYGFRTNSWREVHGH---Q------LDRYFK-VCYWLVIADT--RDLKVILSFHMDNEVFEEIKI----PPHVNYYS  154 (254)
Q Consensus        91 ~~~Vys~~~~~Wr~~~~~---p------~~v~~~-~lyWl~~~~~--~~~~~IvsfD~~~e~~~~i~~----P~~~~~~~  154 (254)
                      .+.++++.+..|......   |      ..+.++ .||-......  .....+-+||+.+.+|..+..    |+.. ...
T Consensus        89 dl~~~d~~~~~w~~~~~~g~~p~~r~g~~~~~~~~~l~lfGG~~~~~~~~~~l~~~d~~t~~W~~l~~~~~~P~~r-~~H  167 (482)
T KOG0379|consen   89 DLYVLDLESQLWTKPAATGDEPSPRYGHSLSAVGDKLYLFGGTDKKYRNLNELHSLDLSTRTWSLLSPTGDPPPPR-AGH  167 (482)
T ss_pred             eeEEeecCCcccccccccCCCCCcccceeEEEECCeEEEEccccCCCCChhheEeccCCCCcEEEecCcCCCCCCc-ccc
Confidence            477777777778765444   2      456777 7877654432  123579999999999998843    2222 556


Q ss_pred             EEEEeCCeEEEEec---CCCCEEEEEEECC-CcceEEEEEecCCCc--ceeeEEEEeCCeEEEEeCcc---ccCCEEEEE
Q 039648          155 SISLYEDSLSIVIP---DAEQCFEIWVMND-NKCWAKHLTLGPFFN--FRINFGFWKNDAFFIESNSR---IYGGCLFLH  225 (254)
Q Consensus       155 ~l~~~~g~L~~~~~---~~~~~~~IW~l~~-~~~W~~~~~i~~~~~--~~~~~~~~~~g~i~l~~~~~---~~~~~~~~y  225 (254)
                      .++..+.+|.+.+.   .....-++|+++- ...|.+....++.+.  ..+.+.+. ++.+++..+..   ..-.-+..+
T Consensus       168 s~~~~g~~l~vfGG~~~~~~~~ndl~i~d~~~~~W~~~~~~g~~P~pR~gH~~~~~-~~~~~v~gG~~~~~~~l~D~~~l  246 (482)
T KOG0379|consen  168 SATVVGTKLVVFGGIGGTGDSLNDLHIYDLETSTWSELDTQGEAPSPRYGHAMVVV-GNKLLVFGGGDDGDVYLNDVHIL  246 (482)
T ss_pred             eEEEECCEEEEECCccCcccceeeeeeeccccccceecccCCCCCCCCCCceEEEE-CCeEEEEeccccCCceecceEee
Confidence            77888888888883   2225678999986 667999988775432  22333333 34444443321   112348999


Q ss_pred             ECCCCcEEEEEEcCc
Q 039648          226 EHRTKEIKNLQVTNP  240 (254)
Q Consensus       226 d~~t~~~~~~~~~~~  240 (254)
                      |+.+.+|+.+...+.
T Consensus       247 dl~~~~W~~~~~~g~  261 (482)
T KOG0379|consen  247 DLSTWEWKLLPTGGD  261 (482)
T ss_pred             ecccceeeeccccCC
Confidence            999999986655543

>PLN03215 ascorbic acid mannose pathway regulator 1; Provisional

Probab=94.23  E-value=3.7  Score=36.38  Aligned_cols=126  Identities=13%  Similarity=0.075  Sum_probs=73.9

Q ss_pred             CCceeeccccC----ceEEEE-EEEEEEEecCCCceEEEEEECCCcceeEecC--C---C-CC-CceeEEEEeCCeEEEE
Q 039648           99 TNSWREVHGHQ----LDRYFK-VCYWLVIADTRDLKVILSFHMDNEVFEEIKI--P---P-HV-NYYSSISLYEDSLSIV  166 (254)
Q Consensus        99 ~~~Wr~~~~~p----~~v~~~-~lyWl~~~~~~~~~~IvsfD~~~e~~~~i~~--P---~-~~-~~~~~l~~~~g~L~~~  166 (254)
                      .++|..++...    .-|+.+ .+|=+...     ..+.++|.+-+. +++..  .   . .. .....|++.+|.|.+|
T Consensus       189 ~~~Wt~l~~~~~~~~DIi~~kGkfYAvD~~-----G~l~~i~~~l~i-~~v~~~i~~~~~~g~~~~~~yLVEs~GdLLmV  262 (373)
T PLN03215        189 GNVLKALKQMGYHFSDIIVHKGQTYALDSI-----GIVYWINSDLEF-SRFGTSLDENITDGCWTGDRRFVECCGELYIV  262 (373)
T ss_pred             CCeeeEccCCCceeeEEEEECCEEEEEcCC-----CeEEEEecCCce-eeecceecccccCCcccCceeEEEECCEEEEE
Confidence            47888886542    345666 77765322     246666643221 12211  1   0 11 1346799999999999


Q ss_pred             ec---C-------------CCCEEEEEEECC-CcceEEEEEecCCCcc---eeeEEE-------EeCCeEEEEeCccccC
Q 039648          167 IP---D-------------AEQCFEIWVMND-NKCWAKHLTLGPFFNF---RINFGF-------WKNDAFFIESNSRIYG  219 (254)
Q Consensus       167 ~~---~-------------~~~~~~IW~l~~-~~~W~~~~~i~~~~~~---~~~~~~-------~~~g~i~l~~~~~~~~  219 (254)
                      ..   .             ....++|++++. ..+|+++.+++..-.+   ...+++       .+.+.|++..     +
T Consensus       263 ~R~~~~~~~~~~~~~~~~~~t~~f~VfklD~~~~~WveV~sLgd~aLFlG~~~s~sv~a~e~pG~k~NcIYFtd-----d  337 (373)
T PLN03215        263 ERLPKESTWKRKADGFEYSRTVGFKVYKFDDELAKWMEVKTLGDNAFVMATDTCFSVLAHEFYGCLPNSIYFTE-----D  337 (373)
T ss_pred             EEEccCcccccccccccccceeEEEEEEEcCCCCcEEEecccCCeEEEEECCccEEEecCCCCCccCCEEEEEC-----C
Confidence            83   1             124689999987 7899999888632101   111222       1234566665     4


Q ss_pred             CEEEEEECCCCcEEEE
Q 039648          220 GCLFLHEHRTKEIKNL  235 (254)
Q Consensus       220 ~~~~~yd~~t~~~~~~  235 (254)
                      ....+||++.++..-+
T Consensus       338 ~~~~v~~~~dg~~~~~  353 (373)
T PLN03215        338 TMPKVFKLDNGNGSSI  353 (373)
T ss_pred             CcceEEECCCCCccce
Confidence            5678999999986554

>PF07762 DUF1618: Protein of unknown function (DUF1618); InterPro: IPR011676 The proteins of this entry are mainly hypothetical proteins expressed by Oryza sativa

Probab=93.38  E-value=0.76  Score=34.19  Aligned_cols=65  Identities=17%  Similarity=0.339  Sum_probs=50.3

Q ss_pred             eEEEEEECCCc--ceeEecCCCCCC-------------ceeEEEEeCCeEEEEe---c------CCCCEEEEEEECC---
Q 039648          129 KVILSFHMDNE--VFEEIKIPPHVN-------------YYSSISLYEDSLSIVI---P------DAEQCFEIWVMND---  181 (254)
Q Consensus       129 ~~IvsfD~~~e--~~~~i~~P~~~~-------------~~~~l~~~~g~L~~~~---~------~~~~~~~IW~l~~---  181 (254)
                      .+|+..|+-.+  .++.++||....             ....++..+|+|-++.   .      ...-.+.+|.|+.   
T Consensus         6 ~GIL~CD~~~~~p~l~~vpLP~~~~~~~~~~~~~~~~~~~R~v~v~~G~ikfV~i~~~~~~~~~~~~~~vt~Wtl~~~~~   85 (131)
T PF07762_consen    6 RGILFCDVFDDSPVLRFVPLPPPCPPNRRDDRPRGSPESYRDVGVSGGKIKFVEIDGYEDDGPPSGGWTVTTWTLKDPEG   85 (131)
T ss_pred             CCEEEEECCCCCccEEEEeCCCccccCcccccccCCchhCceEEecCCCEEEEEEecccCCCcccCCcEEEEEEeccCCC
Confidence            36899998766  788899998653             2357888999998887   1      1355799999997   


Q ss_pred             -CcceEEEEEecC
Q 039648          182 -NKCWAKHLTLGP  193 (254)
Q Consensus       182 -~~~W~~~~~i~~  193 (254)
                       ...|.+.+++..
T Consensus        86 ~~~~W~~d~~v~~   98 (131)
T PF07762_consen   86 SSWEWKKDCEVDL   98 (131)
T ss_pred             CCCCEEEeEEEEh
Confidence             568999998874

>KOG1230 consensus Protein containing repeated kelch motifs [General function prediction only]

Probab=92.23  E-value=2.8  Score=37.37  Aligned_cols=100  Identities=13%  Similarity=0.262  Sum_probs=70.4

Q ss_pred             eEEEEEccCCceeecccc--C------ceEEEE-EEEEEEEecCC--------CceEEEEEECCCcceeEecCCCCCC--
Q 039648           91 NVQVYGFRTNSWREVHGH--Q------LDRYFK-VCYWLVIADTR--------DLKVILSFHMDNEVFEEIKIPPHVN--  151 (254)
Q Consensus        91 ~~~Vys~~~~~Wr~~~~~--p------~~v~~~-~lyWl~~~~~~--------~~~~IvsfD~~~e~~~~i~~P~~~~--  151 (254)
                      ....|+.+.+.|+.+.++  |      ..|.+. ..-|+-.....        +-.-+..||+.+.+|.++.++..+.  
T Consensus        99 dLy~Yn~k~~eWkk~~spn~P~pRsshq~va~~s~~l~~fGGEfaSPnq~qF~HYkD~W~fd~~trkweql~~~g~PS~R  178 (521)
T KOG1230|consen   99 DLYSYNTKKNEWKKVVSPNAPPPRSSHQAVAVPSNILWLFGGEFASPNQEQFHHYKDLWLFDLKTRKWEQLEFGGGPSPR  178 (521)
T ss_pred             eeeEEeccccceeEeccCCCcCCCccceeEEeccCeEEEeccccCCcchhhhhhhhheeeeeeccchheeeccCCCCCCC
Confidence            456788899999998877  2      345555 66666543321        1246889999999999999887655  


Q ss_pred             ceeEEEEeCCeEEEEec--CCCC----EEEEEEECC-CcceEEEEE
Q 039648          152 YYSSISLYEDSLSIVIP--DAEQ----CFEIWVMND-NKCWAKHLT  190 (254)
Q Consensus       152 ~~~~l~~~~g~L~~~~~--~~~~----~~~IW~l~~-~~~W~~~~~  190 (254)
                      ...+++..+..|.+.+.  ....    -=++|+.+- .-.|+++-.
T Consensus       179 SGHRMvawK~~lilFGGFhd~nr~y~YyNDvy~FdLdtykW~Klep  224 (521)
T KOG1230|consen  179 SGHRMVAWKRQLILFGGFHDSNRDYIYYNDVYAFDLDTYKWSKLEP  224 (521)
T ss_pred             ccceeEEeeeeEEEEcceecCCCceEEeeeeEEEeccceeeeeccC
Confidence            55788899999998883  1111    236788775 678999754

>KOG4693 consensus Uncharacterized conserved protein, contains kelch repeat [General function prediction only]

Probab=91.87  E-value=2.9  Score=35.17  Aligned_cols=149  Identities=13%  Similarity=0.122  Sum_probs=89.7

Q ss_pred             CCCcCeEEEEEccCCceeecccc-------------C------ceE-EEE-EEEEEEEecCCCc-eEEEEEECCCcceeE
Q 039648           86 YGKVPNVQVYGFRTNSWREVHGH-------------Q------LDR-YFK-VCYWLVIADTRDL-KVILSFHMDNEVFEE  143 (254)
Q Consensus        86 ~~~~~~~~Vys~~~~~Wr~~~~~-------------p------~~v-~~~-~lyWl~~~~~~~~-~~IvsfD~~~e~~~~  143 (254)
                      ....+.++|+...+-.|..+...             |      .-| |-+ +.-|-..++.+.. ..+.+||.++..|..
T Consensus        40 ~~~piDVH~lNa~~~RWtk~pp~~~ka~i~~~yp~VPyqRYGHtvV~y~d~~yvWGGRND~egaCN~Ly~fDp~t~~W~~  119 (392)
T KOG4693|consen   40 AKDPIDVHVLNAENYRWTKMPPGITKATIESPYPAVPYQRYGHTVVEYQDKAYVWGGRNDDEGACNLLYEFDPETNVWKK  119 (392)
T ss_pred             cCCcceeEEeeccceeEEecCcccccccccCCCCccchhhcCceEEEEcceEEEEcCccCcccccceeeeeccccccccc
Confidence            45567899999999899876542             2      233 334 6667665554433 478899999999986


Q ss_pred             ecC----CCCCCceeEEEEeCCeEEEEecC----CCCEEEEEEECC-CcceEEEEEecCCC---c------ceeeEEEEe
Q 039648          144 IKI----PPHVNYYSSISLYEDSLSIVIPD----AEQCFEIWVMND-NKCWAKHLTLGPFF---N------FRINFGFWK  205 (254)
Q Consensus       144 i~~----P~~~~~~~~l~~~~g~L~~~~~~----~~~~~~IW~l~~-~~~W~~~~~i~~~~---~------~~~~~~~~~  205 (254)
                      -+.    |... ....-.+.+..+.+....    +.-.-++-+|+- ...|..+++-...+   .      +...+.++.
T Consensus       120 p~v~G~vPgaR-DGHsAcV~gn~MyiFGGye~~a~~FS~d~h~ld~~TmtWr~~~Tkg~PprwRDFH~a~~~~~~MYiFG  198 (392)
T KOG4693|consen  120 PEVEGFVPGAR-DGHSACVWGNQMYIFGGYEEDAQRFSQDTHVLDFATMTWREMHTKGDPPRWRDFHTASVIDGMMYIFG  198 (392)
T ss_pred             cceeeecCCcc-CCceeeEECcEEEEecChHHHHHhhhccceeEeccceeeeehhccCCCchhhhhhhhhhccceEEEec
Confidence            543    4333 334556777887777731    222456777776 67899988775321   1      122222221


Q ss_pred             --CCe-EEEEeCccccCCEEEEEECCCCcEEEE
Q 039648          206 --NDA-FFIESNSRIYGGCLFLHEHRTKEIKNL  235 (254)
Q Consensus       206 --~g~-i~l~~~~~~~~~~~~~yd~~t~~~~~~  235 (254)
                        .++ -.+-+.....+..+.+.|++|+.|.+-
T Consensus       199 GR~D~~gpfHs~~e~Yc~~i~~ld~~T~aW~r~  231 (392)
T KOG4693|consen  199 GRSDESGPFHSIHEQYCDTIMALDLATGAWTRT  231 (392)
T ss_pred             cccccCCCccchhhhhcceeEEEeccccccccC
Confidence              111 112111112356899999999999865

>COG4257 Vgb Streptogramin lyase [Defense mechanisms]

Probab=91.30  E-value=8.3  Score=32.75  Aligned_cols=209  Identities=12%  Similarity=0.064  Sum_probs=112.9

Q ss_pred             cCceEEEEEcCCccEEEEcCcccccccCCCCCCCCCCCCC-----CCC--cceEEE-EeeCCCCCeEEEEEeeeeccccc
Q 039648           13 HDGLFCIMQSSTNRLTIWNPATREFRNLPNYKYCNSSNRL-----IPP--STFICL-ESDPINNDFKLLFVHNLWNEKRK   84 (254)
Q Consensus        13 cnGLlcl~~~~~~~~~V~NP~T~~~~~LP~~~~~~~~~~~-----~~~--~~~~g~-g~d~~~~~yKVv~~~~~~~~~~~   84 (254)
                      -+|-+-+....+--+==.||.|++....|......|++-.     ..+  ....++ -+|+++.+++=+.+....     
T Consensus        71 pdG~VWft~qg~gaiGhLdP~tGev~~ypLg~Ga~Phgiv~gpdg~~Witd~~~aI~R~dpkt~evt~f~lp~~~-----  145 (353)
T COG4257          71 PDGAVWFTAQGTGAIGHLDPATGEVETYPLGSGASPHGIVVGPDGSAWITDTGLAIGRLDPKTLEVTRFPLPLEH-----  145 (353)
T ss_pred             CCCceEEecCccccceecCCCCCceEEEecCCCCCCceEEECCCCCeeEecCcceeEEecCcccceEEeeccccc-----
Confidence            3555554443211123349999999999987655554210     000  111122 246666555555443211     


Q ss_pred             cCCCcCeEEEEEccCCceee--------ccc-------c--C-----ceEEEE---EEEEEEEecCCCceEEEEEECCCc
Q 039648           85 RYGKVPNVQVYGFRTNSWRE--------VHG-------H--Q-----LDRYFK---VCYWLVIADTRDLKVILSFHMDNE  139 (254)
Q Consensus        85 ~~~~~~~~~Vys~~~~~Wr~--------~~~-------~--p-----~~v~~~---~lyWl~~~~~~~~~~IvsfD~~~e  139 (254)
                       ....+..-||+=..+-|=.        ++.       .  |     .+|+++   .+++-...+    ..|...|..+.
T Consensus       146 -a~~nlet~vfD~~G~lWFt~q~G~yGrLdPa~~~i~vfpaPqG~gpyGi~atpdGsvwyaslag----naiaridp~~~  220 (353)
T COG4257         146 -ADANLETAVFDPWGNLWFTGQIGAYGRLDPARNVISVFPAPQGGGPYGICATPDGSVWYASLAG----NAIARIDPFAG  220 (353)
T ss_pred             -CCCcccceeeCCCccEEEeeccccceecCcccCceeeeccCCCCCCcceEECCCCcEEEEeccc----cceEEcccccC
Confidence             2234455677766666722        110       0  2     577777   665543322    37999999999


Q ss_pred             ceeEecCCCCCC--ceeEEEEeCCeEEEEecCCCCEEEEEEECC-CcceEEEEEecCCCcceeeEEEEeCCeEEEEeCcc
Q 039648          140 VFEEIKIPPHVN--YYSSISLYEDSLSIVIPDAEQCFEIWVMND-NKCWAKHLTLGPFFNFRINFGFWKNDAFFIESNSR  216 (254)
Q Consensus       140 ~~~~i~~P~~~~--~~~~l~~~~g~L~~~~~~~~~~~~IW~l~~-~~~W~~~~~i~~~~~~~~~~~~~~~g~i~l~~~~~  216 (254)
                      .-++++.|+...  .+..-....|++-...   ...-.+-..+. ..+|.. |.++-...-..-+.+...|.+.+.... 
T Consensus       221 ~aev~p~P~~~~~gsRriwsdpig~~witt---wg~g~l~rfdPs~~sW~e-ypLPgs~arpys~rVD~~grVW~sea~-  295 (353)
T COG4257         221 HAEVVPQPNALKAGSRRIWSDPIGRAWITT---WGTGSLHRFDPSVTSWIE-YPLPGSKARPYSMRVDRHGRVWLSEAD-  295 (353)
T ss_pred             CcceecCCCcccccccccccCccCcEEEec---cCCceeeEeCccccccee-eeCCCCCCCcceeeeccCCcEEeeccc-
Confidence            888999998743  1211123344443332   11112223332 455766 555533212233455667777775442 


Q ss_pred             ccCCEEEEEECCCCcEEEEEEc
Q 039648          217 IYGGCLFLHEHRTKEIKNLQVT  238 (254)
Q Consensus       217 ~~~~~~~~yd~~t~~~~~~~~~  238 (254)
                        .+.+..+|++|.++..+.+.
T Consensus       296 --agai~rfdpeta~ftv~p~p  315 (353)
T COG4257         296 --AGAIGRFDPETARFTVLPIP  315 (353)
T ss_pred             --cCceeecCcccceEEEecCC
Confidence              57799999999999988665

>COG4257 Vgb Streptogramin lyase [Defense mechanisms]

Probab=87.42  E-value=13  Score=31.61  Aligned_cols=118  Identities=18%  Similarity=0.202  Sum_probs=73.9

Q ss_pred             EEeccCceEEEEEcCCccEEEEcCcccccccCCCCCCCCCCCCCCCCcceEEEEeeCCCCCeEEEEEeeeeccccccCCC
Q 039648            9 FVGYHDGLFCIMQSSTNRLTIWNPATREFRNLPNYKYCNSSNRLIPPSTFICLESDPINNDFKLLFVHNLWNEKRKRYGK   88 (254)
Q Consensus         9 i~~scnGLlcl~~~~~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~g~g~d~~~~~yKVv~~~~~~~~~~~~~~~   88 (254)
                      |...-||=+-...-.+.-+..-||.+..-..+|.+..... +       .=+..-|+...    +++..         -.
T Consensus       194 i~atpdGsvwyaslagnaiaridp~~~~aev~p~P~~~~~-g-------sRriwsdpig~----~witt---------wg  252 (353)
T COG4257         194 ICATPDGSVWYASLAGNAIARIDPFAGHAEVVPQPNALKA-G-------SRRIWSDPIGR----AWITT---------WG  252 (353)
T ss_pred             eEECCCCcEEEEeccccceEEcccccCCcceecCCCcccc-c-------ccccccCccCc----EEEec---------cC
Confidence            4455566665554433336788999998888887755211 1       11222233221    22221         11


Q ss_pred             cCeEEEEEccCCceeecccc---C--ceEEEE--EEEEEEEecCCCceEEEEEECCCcceeEecCCCCC
Q 039648           89 VPNVQVYGFRTNSWREVHGH---Q--LDRYFK--VCYWLVIADTRDLKVILSFHMDNEVFEEIKIPPHV  150 (254)
Q Consensus        89 ~~~~~Vys~~~~~Wr~~~~~---p--~~v~~~--~lyWl~~~~~~~~~~IvsfD~~~e~~~~i~~P~~~  150 (254)
                      .-.+.-|+=...+|++-..+   +  ..++++  -.-|+...+.   ..|..||.++++|+++++|..-
T Consensus       253 ~g~l~rfdPs~~sW~eypLPgs~arpys~rVD~~grVW~sea~a---gai~rfdpeta~ftv~p~pr~n  318 (353)
T COG4257         253 TGSLHRFDPSVTSWIEYPLPGSKARPYSMRVDRHGRVWLSEADA---GAIGRFDPETARFTVLPIPRPN  318 (353)
T ss_pred             CceeeEeCcccccceeeeCCCCCCCcceeeeccCCcEEeecccc---CceeecCcccceEEEecCCCCC
Confidence            23456666677788876554   3  788998  8889865543   3799999999999999988653

>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=85.93  E-value=25  Score=31.35  Aligned_cols=144  Identities=11%  Similarity=0.099  Sum_probs=79.2

Q ss_pred             CeEEEEEccCC-----ceeecccc-C---ceE-EEE-EEEEEEEecCCCceEEEEEECCCcc---eeEecCCCCCC-cee
Q 039648           90 PNVQVYGFRTN-----SWREVHGH-Q---LDR-YFK-VCYWLVIADTRDLKVILSFHMDNEV---FEEIKIPPHVN-YYS  154 (254)
Q Consensus        90 ~~~~Vys~~~~-----~Wr~~~~~-p---~~v-~~~-~lyWl~~~~~~~~~~IvsfD~~~e~---~~~i~~P~~~~-~~~  154 (254)
                      ..+.+.++.++     .|+.+... +   ..+ +.+ .+|.++. .......|++.|+++-.   |..+-+|.... ...
T Consensus       252 s~v~~~d~~~~~~~~~~~~~l~~~~~~~~~~v~~~~~~~yi~Tn-~~a~~~~l~~~~l~~~~~~~~~~~l~~~~~~~~l~  330 (414)
T PF02897_consen  252 SEVYLLDLDDGGSPDAKPKLLSPREDGVEYYVDHHGDRLYILTN-DDAPNGRLVAVDLADPSPAEWWTVLIPEDEDVSLE  330 (414)
T ss_dssp             EEEEEEECCCTTTSS-SEEEEEESSSS-EEEEEEETTEEEEEE--TT-TT-EEEEEETTSTSGGGEEEEEE--SSSEEEE
T ss_pred             CeEEEEeccccCCCcCCcEEEeCCCCceEEEEEccCCEEEEeeC-CCCCCcEEEEecccccccccceeEEcCCCCceeEE
Confidence            45555666553     67776543 2   223 234 6776665 33345799999999765   55433333322 345


Q ss_pred             EEEEeCCeEEEEec-CCCCEEEEEEECCCcceEEEEEecCCCcceeeEEE-EeCCeEEEEeCccccCCEEEEEECCCCcE
Q 039648          155 SISLYEDSLSIVIP-DAEQCFEIWVMNDNKCWAKHLTLGPFFNFRINFGF-WKNDAFFIESNSRIYGGCLFLHEHRTKEI  232 (254)
Q Consensus       155 ~l~~~~g~L~~~~~-~~~~~~~IW~l~~~~~W~~~~~i~~~~~~~~~~~~-~~~g~i~l~~~~~~~~~~~~~yd~~t~~~  232 (254)
                      .+...++.|.+... .....+.|+-++  ..|.....-.+..+....+.. .+.+++++....+.....++.||+++++.
T Consensus       331 ~~~~~~~~Lvl~~~~~~~~~l~v~~~~--~~~~~~~~~~p~~g~v~~~~~~~~~~~~~~~~ss~~~P~~~y~~d~~t~~~  408 (414)
T PF02897_consen  331 DVSLFKDYLVLSYRENGSSRLRVYDLD--DGKESREIPLPEAGSVSGVSGDFDSDELRFSYSSFTTPPTVYRYDLATGEL  408 (414)
T ss_dssp             EEEEETTEEEEEEEETTEEEEEEEETT---TEEEEEEESSSSSEEEEEES-TT-SEEEEEEEETTEEEEEEEEETTTTCE
T ss_pred             EEEEECCEEEEEEEECCccEEEEEECC--CCcEEeeecCCcceEEeccCCCCCCCEEEEEEeCCCCCCEEEEEECCCCCE
Confidence            55667889887773 334556666555  134433222222211111111 23556777766555577899999999999


Q ss_pred             EEEE
Q 039648          233 KNLQ  236 (254)
Q Consensus       233 ~~~~  236 (254)
                      +.+.
T Consensus       409 ~~~k  412 (414)
T PF02897_consen  409 TLLK  412 (414)
T ss_dssp             EEEE
T ss_pred             EEEE
Confidence            8774

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....

>KOG0289 consensus mRNA splicing factor [General function prediction only]

Probab=85.49  E-value=26  Score=31.60  Aligned_cols=118  Identities=14%  Similarity=0.274  Sum_probs=70.7

Q ss_pred             cCeEEEEEccCCceeecccc-----C-ceEEEE-EEEEEEEecCCCceEEEEEECCC-cceeEecCCCCCC-ceeEEEEe
Q 039648           89 VPNVQVYGFRTNSWREVHGH-----Q-LDRYFK-VCYWLVIADTRDLKVILSFHMDN-EVFEEIKIPPHVN-YYSSISLY  159 (254)
Q Consensus        89 ~~~~~Vys~~~~~Wr~~~~~-----p-~~v~~~-~lyWl~~~~~~~~~~IvsfD~~~-e~~~~i~~P~~~~-~~~~l~~~  159 (254)
                      ...+.||++.+..  .+..+     | ..+-+. .=||++....  ...|..+|+.. +-|..+++|+... ....+...
T Consensus       368 d~~vkiwdlks~~--~~a~Fpght~~vk~i~FsENGY~Lat~ad--d~~V~lwDLRKl~n~kt~~l~~~~~v~s~~fD~S  443 (506)
T KOG0289|consen  368 DGVVKIWDLKSQT--NVAKFPGHTGPVKAISFSENGYWLATAAD--DGSVKLWDLRKLKNFKTIQLDEKKEVNSLSFDQS  443 (506)
T ss_pred             CceEEEEEcCCcc--ccccCCCCCCceeEEEeccCceEEEEEec--CCeEEEEEehhhcccceeeccccccceeEEEcCC
Confidence            3456777777654  33322     3 677777 9999986532  23599999985 4788888888643 22333333


Q ss_pred             CCeEEEEecCCCCEEEEEEECC-CcceEEEEEecCCCcceeeEEEEeCCeEEEEeC
Q 039648          160 EDSLSIVIPDAEQCFEIWVMND-NKCWAKHLTLGPFFNFRINFGFWKNDAFFIESN  214 (254)
Q Consensus       160 ~g~L~~~~~~~~~~~~IW~l~~-~~~W~~~~~i~~~~~~~~~~~~~~~g~i~l~~~  214 (254)
                      +-.|.+.    ...+.|...++ ..+|++.-......+...-+.+.+....+...+
T Consensus       444 Gt~L~~~----g~~l~Vy~~~k~~k~W~~~~~~~~~sg~st~v~Fg~~aq~l~s~s  495 (506)
T KOG0289|consen  444 GTYLGIA----GSDLQVYICKKKTKSWTEIKELADHSGLSTGVRFGEHAQYLASTS  495 (506)
T ss_pred             CCeEEee----cceeEEEEEecccccceeeehhhhcccccceeeecccceEEeecc
Confidence            3333333    46788888887 789999876654332333333444444444433

>PF13964 Kelch_6: Kelch motif

Probab=85.40  E-value=2.2  Score=25.65  Aligned_cols=21  Identities=24%  Similarity=0.510  Sum_probs=18.2

Q ss_pred             ccEEEEcCcccccccCCCCCC
Q 039648           25 NRLTIWNPATREFRNLPNYKY   45 (254)
Q Consensus        25 ~~~~V~NP~T~~~~~LP~~~~   45 (254)
                      .++.++||.|++|..||+.+.
T Consensus        28 ~~v~~yd~~t~~W~~~~~mp~   48 (50)
T PF13964_consen   28 NDVERYDPETNTWEQLPPMPT   48 (50)
T ss_pred             ccEEEEcCCCCcEEECCCCCC
Confidence            457999999999999998764

>PF13418 Kelch_4: Galactose oxidase, central domain; PDB: 2UVK_B

Probab=82.25  E-value=1.7  Score=26.02  Aligned_cols=19  Identities=26%  Similarity=0.448  Sum_probs=13.9

Q ss_pred             cEEEEcCcccccccCCCCC
Q 039648           26 RLTIWNPATREFRNLPNYK   44 (254)
Q Consensus        26 ~~~V~NP~T~~~~~LP~~~   44 (254)
                      +++++|+.|++|.+||++|
T Consensus        30 d~~~~d~~~~~W~~~~~~P   48 (49)
T PF13418_consen   30 DLWIFDIETNTWTRLPSMP   48 (49)
T ss_dssp             -EEEEETTTTEEEE--SS-
T ss_pred             CEEEEECCCCEEEECCCCC
Confidence            5799999999999997765

>KOG2055 consensus WD40 repeat protein [General function prediction only]

Probab=81.75  E-value=20  Score=32.43  Aligned_cols=97  Identities=13%  Similarity=0.191  Sum_probs=61.7

Q ss_pred             ceEEEEEECCCcceeEecCCCCCC--ce--eEEEEeCCeEEEEecCCCCEEEEEEECCCcceEEEEEecCCCcceeeEEE
Q 039648          128 LKVILSFHMDNEVFEEIKIPPHVN--YY--SSISLYEDSLSIVIPDAEQCFEIWVMNDNKCWAKHLTLGPFFNFRINFGF  203 (254)
Q Consensus       128 ~~~IvsfD~~~e~~~~i~~P~~~~--~~--~~l~~~~g~L~~~~~~~~~~~~IW~l~~~~~W~~~~~i~~~~~~~~~~~~  203 (254)
                      +.++.++|+++.++..+..|....  ..  ..+...+..|++.+.  ...|.+-.++ ...|..-+.|+   +...-+.+
T Consensus       279 rky~ysyDle~ak~~k~~~~~g~e~~~~e~FeVShd~~fia~~G~--~G~I~lLhak-T~eli~s~Kie---G~v~~~~f  352 (514)
T KOG2055|consen  279 RKYLYSYDLETAKVTKLKPPYGVEEKSMERFEVSHDSNFIAIAGN--NGHIHLLHAK-TKELITSFKIE---GVVSDFTF  352 (514)
T ss_pred             ceEEEEeeccccccccccCCCCcccchhheeEecCCCCeEEEccc--CceEEeehhh-hhhhhheeeec---cEEeeEEE
Confidence            358999999999999998777554  22  222333444444442  3334433333 35666666654   24456677


Q ss_pred             EeCCeEEEEeCccccCCEEEEEECCCCcEE
Q 039648          204 WKNDAFFIESNSRIYGGCLFLHEHRTKEIK  233 (254)
Q Consensus       204 ~~~g~i~l~~~~~~~~~~~~~yd~~t~~~~  233 (254)
                      ..+++.++.++.   .+++..+|++++...
T Consensus       353 sSdsk~l~~~~~---~GeV~v~nl~~~~~~  379 (514)
T KOG2055|consen  353 SSDSKELLASGG---TGEVYVWNLRQNSCL  379 (514)
T ss_pred             ecCCcEEEEEcC---CceEEEEecCCcceE
Confidence            778887776653   679999999988543

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	254
3ii7_A	306	Kelch-like protein 7; protein-binding, kelch-repea	99.06
2vpj_A	301	Kelch-like protein 12; adaptor protein, WNT signal	99.02
2xn4_A	302	Kelch-like protein 2; structural protein, cytoskel	99.02
1zgk_A	308	Kelch-like ECH-associated protein 1; beta-propelle	99.0
4asc_A	315	Kelch repeat and BTB domain-containing protein 5;	98.99
2woz_A	318	Kelch repeat and BTB domain-containing protein 10;	98.95
2vpj_A	301	Kelch-like protein 12; adaptor protein, WNT signal	98.78
3ii7_A	306	Kelch-like protein 7; protein-binding, kelch-repea	98.74
2xn4_A	302	Kelch-like protein 2; structural protein, cytoskel	98.74
4asc_A	315	Kelch repeat and BTB domain-containing protein 5;	98.71
1zgk_A	308	Kelch-like ECH-associated protein 1; beta-propelle	98.7
2uvk_A	357	YJHT; unknown function, hypothetical protein, sial	98.68
2woz_A	318	Kelch repeat and BTB domain-containing protein 10;	98.51
2zwa_A	695	Leucine carboxyl methyltransferase 2; HET: SAH CIT	98.32
2uvk_A	357	YJHT; unknown function, hypothetical protein, sial	98.19
1k3i_A	656	Galactose oxidase precursor; blade beta propeller,	97.56
2zwa_A	695	Leucine carboxyl methyltransferase 2; HET: SAH CIT	97.32
1k3i_A	656	Galactose oxidase precursor; blade beta propeller,	96.3
3jrp_A	379	Fusion protein of protein transport protein SEC13	84.46
3jro_A	753	Fusion protein of protein transport protein SEC13	84.09
4gga_A	420	P55CDC, cell division cycle protein 20 homolog; ce	83.76
3mbr_X	243	Glutamine cyclotransferase; beta-propeller; 1.44A	81.1
4e54_B	435	DNA damage-binding protein 2; beta barrel, double	80.93

>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}

Probab=99.06  E-value=6.2e-08  Score=81.54  Aligned_cols=207  Identities=10%  Similarity=-0.006  Sum_probs=129.2

Q ss_pred             EeccCceEEEEEcC----CccEEEEcCcccccccCCCCCCCCCCCCCCCCcceEEEEeeCCCCCeEEEEEeeeecccccc
Q 039648           10 VGYHDGLFCIMQSS----TNRLTIWNPATREFRNLPNYKYCNSSNRLIPPSTFICLESDPINNDFKLLFVHNLWNEKRKR   85 (254)
Q Consensus        10 ~~scnGLlcl~~~~----~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~g~g~d~~~~~yKVv~~~~~~~~~~~~   85 (254)
                      ....+|.|.+....    ..++.++||.|++|..+|+.+..+       ..+ ....++     =||+.+.... .   +
T Consensus        51 ~~~~~~~lyv~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~~r-------~~~-~~~~~~-----~~iyv~GG~~-~---~  113 (306)
T 3ii7_A           51 CVFWDNVVYILGGSQLFPIKRMDCYNVVKDSWYSKLGPPTPR-------DSL-AACAAE-----GKIYTSGGSE-V---G  113 (306)
T ss_dssp             EEEETTEEEEECCBSSSBCCEEEEEETTTTEEEEEECCSSCC-------BSC-EEEEET-----TEEEEECCBB-T---T
T ss_pred             EEEECCEEEEEeCCCCCCcceEEEEeCCCCeEEECCCCCccc-------cce-eEEEEC-----CEEEEECCCC-C---C
Confidence            33456665544321    235799999999999998766431       111 121222     2566654321 0   1


Q ss_pred             CCCcCeEEEEEccCCceeeccccC------ceEEEE-EEEEEEEecCC-C----ceEEEEEECCCcceeEec-CCCCCCc
Q 039648           86 YGKVPNVQVYGFRTNSWREVHGHQ------LDRYFK-VCYWLVIADTR-D----LKVILSFHMDNEVFEEIK-IPPHVNY  152 (254)
Q Consensus        86 ~~~~~~~~Vys~~~~~Wr~~~~~p------~~v~~~-~lyWl~~~~~~-~----~~~IvsfD~~~e~~~~i~-~P~~~~~  152 (254)
                      ......+++|+..+++|+.+..+|      ..+.++ .+|-+...... .    ...+..||+++++|+.++ +|... .
T Consensus       114 ~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r-~  192 (306)
T 3ii7_A          114 NSALYLFECYDTRTESWHTKPSMLTQRCSHGMVEANGLIYVCGGSLGNNVSGRVLNSCEVYDPATETWTELCPMIEAR-K  192 (306)
T ss_dssp             BSCCCCEEEEETTTTEEEEECCCSSCCBSCEEEEETTEEEEECCEESCTTTCEECCCEEEEETTTTEEEEECCCSSCC-B
T ss_pred             CcEeeeEEEEeCCCCceEeCCCCcCCcceeEEEEECCEEEEECCCCCCCCcccccceEEEeCCCCCeEEECCCccchh-h
Confidence            234567999999999999987774      345667 88877543211 1    356899999999999984 44333 4


Q ss_pred             eeEEEEeCCeEEEEecC--CCCEEEEEEECC-CcceEEEEEecCCCcceeeEEEEeCCeEEEEeCcc--ccCCEEEEEEC
Q 039648          153 YSSISLYEDSLSIVIPD--AEQCFEIWVMND-NKCWAKHLTLGPFFNFRINFGFWKNDAFFIESNSR--IYGGCLFLHEH  227 (254)
Q Consensus       153 ~~~l~~~~g~L~~~~~~--~~~~~~IW~l~~-~~~W~~~~~i~~~~~~~~~~~~~~~g~i~l~~~~~--~~~~~~~~yd~  227 (254)
                      ....+..+++|.++...  ....-++|+++- ...|+++-.++... ...-.. .-++.|++.-...  .....+..||+
T Consensus       193 ~~~~~~~~~~i~v~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r-~~~~~~-~~~~~i~v~GG~~~~~~~~~~~~yd~  270 (306)
T 3ii7_A          193 NHGLVFVKDKIFAVGGQNGLGGLDNVEYYDIKLNEWKMVSPMPWKG-VTVKCA-AVGSIVYVLAGFQGVGRLGHILEYNT  270 (306)
T ss_dssp             SCEEEEETTEEEEECCEETTEEBCCEEEEETTTTEEEECCCCSCCB-SCCEEE-EETTEEEEEECBCSSSBCCEEEEEET
T ss_pred             cceEEEECCEEEEEeCCCCCCCCceEEEeeCCCCcEEECCCCCCCc-cceeEE-EECCEEEEEeCcCCCeeeeeEEEEcC
Confidence            56677889999999842  112235777775 67899875554322 111222 2266776664310  01357899999


Q ss_pred             CCCcEEEEE
Q 039648          228 RTKEIKNLQ  236 (254)
Q Consensus       228 ~t~~~~~~~  236 (254)
                      ++++|+.+.
T Consensus       271 ~~~~W~~~~  279 (306)
T 3ii7_A          271 ETDKWVANS  279 (306)
T ss_dssp             TTTEEEEEE
T ss_pred             CCCeEEeCC
Confidence            999999874

>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}

Probab=99.02  E-value=1.6e-07  Score=78.70  Aligned_cols=206  Identities=7%  Similarity=-0.007  Sum_probs=127.3

Q ss_pred             EeccCceEEEEEc-C----CccEEEEcCcccc---cccCCCCCCCCCCCCCCCCcceEEEEeeCCCCCeEEEEEeeeecc
Q 039648           10 VGYHDGLFCIMQS-S----TNRLTIWNPATRE---FRNLPNYKYCNSSNRLIPPSTFICLESDPINNDFKLLFVHNLWNE   81 (254)
Q Consensus        10 ~~scnGLlcl~~~-~----~~~~~V~NP~T~~---~~~LP~~~~~~~~~~~~~~~~~~g~g~d~~~~~yKVv~~~~~~~~   81 (254)
                      ....+|-+.+... .    ...++++||.|++   |..+|+.+..+       ..+... .++     =|++.+..... 
T Consensus        58 ~~~~~~~l~v~GG~~~~~~~~~~~~~d~~~~~~~~W~~~~~~p~~r-------~~~~~~-~~~-----~~lyv~GG~~~-  123 (301)
T 2vpj_A           58 SVSLHDRIYVIGGYDGRSRLSSVECLDYTADEDGVWYSVAPMNVRR-------GLAGAT-TLG-----DMIYVSGGFDG-  123 (301)
T ss_dssp             EEEETTEEEEECCBCSSCBCCCEEEEETTCCTTCCCEEECCCSSCC-------BSCEEE-EET-----TEEEEECCBCS-
T ss_pred             EEEECCEEEEEcCCCCCccCceEEEEECCCCCCCeeEECCCCCCCc-------cceeEE-EEC-----CEEEEEcccCC-
Confidence            3345665554332 1    2357999999999   99998766531       111111 222     25666643211 


Q ss_pred             ccccCCCcCeEEEEEccCCceeeccccC------ceEEEE-EEEEEEEecCC-CceEEEEEECCCcceeEec-CCCCCCc
Q 039648           82 KRKRYGKVPNVQVYGFRTNSWREVHGHQ------LDRYFK-VCYWLVIADTR-DLKVILSFHMDNEVFEEIK-IPPHVNY  152 (254)
Q Consensus        82 ~~~~~~~~~~~~Vys~~~~~Wr~~~~~p------~~v~~~-~lyWl~~~~~~-~~~~IvsfD~~~e~~~~i~-~P~~~~~  152 (254)
                          ......+++|+..+++|+.+..+|      ..+.++ .+|-+...... ....+..||+++++|+.++ +|... .
T Consensus       124 ----~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r-~  198 (301)
T 2vpj_A          124 ----SRRHTSMERYDPNIDQWSMLGDMQTAREGAGLVVASGVIYCLGGYDGLNILNSVEKYDPHTGHWTNVTPMATKR-S  198 (301)
T ss_dssp             ----SCBCCEEEEEETTTTEEEEEEECSSCCBSCEEEEETTEEEEECCBCSSCBCCCEEEEETTTTEEEEECCCSSCC-B
T ss_pred             ----CcccceEEEEcCCCCeEEECCCCCCCcccceEEEECCEEEEECCCCCCcccceEEEEeCCCCcEEeCCCCCccc-c
Confidence                122457899999999999987663      345567 88876533211 1356899999999999984 44333 4


Q ss_pred             eeEEEEeCCeEEEEecCC--CCEEEEEEECC-CcceEEEEEecCCCcceeeEEEEeCCeEEEEeCccc--cCCEEEEEEC
Q 039648          153 YSSISLYEDSLSIVIPDA--EQCFEIWVMND-NKCWAKHLTLGPFFNFRINFGFWKNDAFFIESNSRI--YGGCLFLHEH  227 (254)
Q Consensus       153 ~~~l~~~~g~L~~~~~~~--~~~~~IW~l~~-~~~W~~~~~i~~~~~~~~~~~~~~~g~i~l~~~~~~--~~~~~~~yd~  227 (254)
                      ....+..+++|.++....  ...-++|+++- ..+|+++-.++... ...-.. .-++.|++.-....  ....+..||+
T Consensus       199 ~~~~~~~~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r-~~~~~~-~~~~~i~v~GG~~~~~~~~~v~~yd~  276 (301)
T 2vpj_A          199 GAGVALLNDHIYVVGGFDGTAHLSSVEAYNIRTDSWTTVTSMTTPR-CYVGAT-VLRGRLYAIAGYDGNSLLSSIECYDP  276 (301)
T ss_dssp             SCEEEEETTEEEEECCBCSSSBCCCEEEEETTTTEEEEECCCSSCC-BSCEEE-EETTEEEEECCBCSSSBEEEEEEEET
T ss_pred             cceEEEECCEEEEEeCCCCCcccceEEEEeCCCCcEEECCCCCCcc-cceeEE-EECCEEEEEcCcCCCcccccEEEEcC
Confidence            456778899999998421  11345677665 68899886554332 111222 23667766643110  0146899999


Q ss_pred             CCCcEEEEE
Q 039648          228 RTKEIKNLQ  236 (254)
Q Consensus       228 ~t~~~~~~~  236 (254)
                      ++++|+.+.
T Consensus       277 ~~~~W~~~~  285 (301)
T 2vpj_A          277 IIDSWEVVT  285 (301)
T ss_dssp             TTTEEEEEE
T ss_pred             CCCeEEEcC
Confidence            999999873

>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}

Probab=99.02  E-value=1.1e-07  Score=79.75  Aligned_cols=205  Identities=11%  Similarity=0.105  Sum_probs=127.1

Q ss_pred             eccCceEEEEEc-C----CccEEEEcCcccccccCCCCCCCCCCCCCCCCcceEEEEeeCCCCCeEEEEEeeeecccccc
Q 039648           11 GYHDGLFCIMQS-S----TNRLTIWNPATREFRNLPNYKYCNSSNRLIPPSTFICLESDPINNDFKLLFVHNLWNEKRKR   85 (254)
Q Consensus        11 ~scnGLlcl~~~-~----~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~g~g~d~~~~~yKVv~~~~~~~~~~~~   85 (254)
                      ...+|-|.+... .    ..++.++||.|++|..+|+.+..+       ..+... .++     =+++.+.....     
T Consensus        58 ~~~~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r-------~~~~~~-~~~-----~~iyv~GG~~~-----  119 (302)
T 2xn4_A           58 VYMAGLVFAVGGFNGSLRVRTVDSYDPVKDQWTSVANMRDRR-------STLGAA-VLN-----GLLYAVGGFDG-----  119 (302)
T ss_dssp             EEETTEEEEESCBCSSSBCCCEEEEETTTTEEEEECCCSSCC-------BSCEEE-EET-----TEEEEEEEECS-----
T ss_pred             EEECCEEEEEeCcCCCccccceEEECCCCCceeeCCCCCccc-------cceEEE-EEC-----CEEEEEcCCCC-----
Confidence            344666555432 1    134799999999999999765531       111111 122     15555543211     


Q ss_pred             CCCcCeEEEEEccCCceeeccccC------ceEEEE-EEEEEEEecCCC---ceEEEEEECCCcceeEec-CCCCCCcee
Q 039648           86 YGKVPNVQVYGFRTNSWREVHGHQ------LDRYFK-VCYWLVIADTRD---LKVILSFHMDNEVFEEIK-IPPHVNYYS  154 (254)
Q Consensus        86 ~~~~~~~~Vys~~~~~Wr~~~~~p------~~v~~~-~lyWl~~~~~~~---~~~IvsfD~~~e~~~~i~-~P~~~~~~~  154 (254)
                      ......+++|+..++.|+.+..+|      ..+.++ .+|-+.......   ...+..||+++++|+.++ +|... ...
T Consensus       120 ~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r-~~~  198 (302)
T 2xn4_A          120 STGLSSVEAYNIKSNEWFHVAPMNTRRSSVGVGVVGGLLYAVGGYDVASRQCLSTVECYNATTNEWTYIAEMSTRR-SGA  198 (302)
T ss_dssp             SCEEEEEEEEETTTTEEEEECCCSSCCBSCEEEEETTEEEEECCEETTTTEECCCEEEEETTTTEEEEECCCSSCC-BSC
T ss_pred             CccCceEEEEeCCCCeEeecCCCCCcccCceEEEECCEEEEEeCCCCCCCccccEEEEEeCCCCcEEECCCCcccc-ccc
Confidence            122347899999999999997764      345667 888775332211   246899999999999983 44333 445


Q ss_pred             EEEEeCCeEEEEecCC--CCEEEEEEECC-CcceEEEEEecCCCcceeeEEEEeCCeEEEEeCcc--ccCCEEEEEECCC
Q 039648          155 SISLYEDSLSIVIPDA--EQCFEIWVMND-NKCWAKHLTLGPFFNFRINFGFWKNDAFFIESNSR--IYGGCLFLHEHRT  229 (254)
Q Consensus       155 ~l~~~~g~L~~~~~~~--~~~~~IW~l~~-~~~W~~~~~i~~~~~~~~~~~~~~~g~i~l~~~~~--~~~~~~~~yd~~t  229 (254)
                      ..+..+++|.++....  ...-++|+++- ...|+++..++... ....+ +.-++.|++.-...  .....+..||+++
T Consensus       199 ~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~r-~~~~~-~~~~~~i~v~GG~~~~~~~~~v~~yd~~~  276 (302)
T 2xn4_A          199 GVGVLNNLLYAVGGHDGPLVRKSVEVYDPTTNAWRQVADMNMCR-RNAGV-CAVNGLLYVVGGDDGSCNLASVEYYNPTT  276 (302)
T ss_dssp             EEEEETTEEEEECCBSSSSBCCCEEEEETTTTEEEEECCCSSCC-BSCEE-EEETTEEEEECCBCSSSBCCCEEEEETTT
T ss_pred             cEEEECCEEEEECCCCCCcccceEEEEeCCCCCEeeCCCCCCcc-ccCeE-EEECCEEEEECCcCCCcccccEEEEcCCC
Confidence            6778899999998421  12335777776 68899976555332 11112 22366777664321  0124589999999


Q ss_pred             CcEEEEE
Q 039648          230 KEIKNLQ  236 (254)
Q Consensus       230 ~~~~~~~  236 (254)
                      ++|+.+.
T Consensus       277 ~~W~~~~  283 (302)
T 2xn4_A          277 DKWTVVS  283 (302)
T ss_dssp             TEEEECS
T ss_pred             CeEEECC
Confidence            9999874

>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A

Probab=99.00  E-value=2.2e-07  Score=78.45  Aligned_cols=191  Identities=9%  Similarity=0.028  Sum_probs=121.2

Q ss_pred             cEEEEcCcccccccCCCCCCCCCCCCCCCCcceEEEEeeCCCCCeEEEEEeeeeccccccCCCcCeEEEEEccCCceeec
Q 039648           26 RLTIWNPATREFRNLPNYKYCNSSNRLIPPSTFICLESDPINNDFKLLFVHNLWNEKRKRYGKVPNVQVYGFRTNSWREV  105 (254)
Q Consensus        26 ~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~g~g~d~~~~~yKVv~~~~~~~~~~~~~~~~~~~~Vys~~~~~Wr~~  105 (254)
                      ++.++||.|++|..+|+.+..+       ..... ..++     =||+.+.....     ......+++|+..+++|+.+
T Consensus        91 ~~~~~d~~~~~W~~~~~~p~~r-------~~~~~-~~~~-----~~iyv~GG~~~-----~~~~~~~~~yd~~~~~W~~~  152 (308)
T 1zgk_A           91 ALDCYNPMTNQWSPCAPMSVPR-------NRIGV-GVID-----GHIYAVGGSHG-----CIHHNSVERYEPERDEWHLV  152 (308)
T ss_dssp             CEEEEETTTTEEEECCCCSSCC-------BTCEE-EEET-----TEEEEECCEET-----TEECCCEEEEETTTTEEEEC
T ss_pred             eEEEECCCCCeEeECCCCCcCc-------cccEE-EEEC-----CEEEEEcCCCC-----CcccccEEEECCCCCeEeEC
Confidence            4799999999999998766531       11111 1222     15666643211     12235789999999999998


Q ss_pred             cccC------ceEEEE-EEEEEEEecCC-CceEEEEEECCCcceeEec-CCCCCCceeEEEEeCCeEEEEecC--CCCEE
Q 039648          106 HGHQ------LDRYFK-VCYWLVIADTR-DLKVILSFHMDNEVFEEIK-IPPHVNYYSSISLYEDSLSIVIPD--AEQCF  174 (254)
Q Consensus       106 ~~~p------~~v~~~-~lyWl~~~~~~-~~~~IvsfD~~~e~~~~i~-~P~~~~~~~~l~~~~g~L~~~~~~--~~~~~  174 (254)
                      ..+|      ..+.++ .+|-+...... ....+..||+++++|+.++ +|... .....+..+++|.++...  ....-
T Consensus       153 ~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r-~~~~~~~~~~~iyv~GG~~~~~~~~  231 (308)
T 1zgk_A          153 APMLTRRIGVGVAVLNRLLYAVGGFDGTNRLNSAECYYPERNEWRMITAMNTIR-SGAGVCVLHNCIYAAGGYDGQDQLN  231 (308)
T ss_dssp             CCCSSCCBSCEEEEETTEEEEECCBCSSCBCCCEEEEETTTTEEEECCCCSSCC-BSCEEEEETTEEEEECCBCSSSBCC
T ss_pred             CCCCccccceEEEEECCEEEEEeCCCCCCcCceEEEEeCCCCeEeeCCCCCCcc-ccceEEEECCEEEEEeCCCCCCccc
Confidence            7764      345667 88876533211 1356999999999999884 34332 445667789999999842  12245


Q ss_pred             EEEEECC-CcceEEEEEecCCCcceeeEEEEeCCeEEEEeCcc--ccCCEEEEEECCCCcEEEEEE
Q 039648          175 EIWVMND-NKCWAKHLTLGPFFNFRINFGFWKNDAFFIESNSR--IYGGCLFLHEHRTKEIKNLQV  237 (254)
Q Consensus       175 ~IW~l~~-~~~W~~~~~i~~~~~~~~~~~~~~~g~i~l~~~~~--~~~~~~~~yd~~t~~~~~~~~  237 (254)
                      ++|+++- ...|+++..++... ...-.. .-++.|++.-...  .....+..||+++++|+.+.-
T Consensus       232 ~v~~yd~~~~~W~~~~~~p~~r-~~~~~~-~~~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~~~~~  295 (308)
T 1zgk_A          232 SVERYDVETETWTFVAPMKHRR-SALGIT-VHQGRIYVLGGYDGHTFLDSVECYDPDTDTWSEVTR  295 (308)
T ss_dssp             CEEEEETTTTEEEECCCCSSCC-BSCEEE-EETTEEEEECCBCSSCBCCEEEEEETTTTEEEEEEE
T ss_pred             eEEEEeCCCCcEEECCCCCCCc-cceEEE-EECCEEEEEcCcCCCcccceEEEEcCCCCEEeecCC
Confidence            6777775 68999876554322 111122 2366776664311  113578999999999998743

>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}

Probab=98.99  E-value=1e-07  Score=80.64  Aligned_cols=191  Identities=8%  Similarity=0.000  Sum_probs=121.0

Q ss_pred             EEEEcCcccccccCCCCCCCCCCCCCCCCcceEEEEeeCCCCCeEEEEEeeeeccccccCCCcCeEEEEEccCCceeecc
Q 039648           27 LTIWNPATREFRNLPNYKYCNSSNRLIPPSTFICLESDPINNDFKLLFVHNLWNEKRKRYGKVPNVQVYGFRTNSWREVH  106 (254)
Q Consensus        27 ~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~g~g~d~~~~~yKVv~~~~~~~~~~~~~~~~~~~~Vys~~~~~Wr~~~  106 (254)
                      ++++||.|++|..+|+.|..+       ..+.. ..++     =||+.+......  .+......+++|+..+++|+.+.
T Consensus        69 ~~~~d~~~~~W~~~~~~p~~r-------~~~~~-~~~~-----~~lyv~GG~~~~--~~~~~~~~~~~~d~~~~~W~~~~  133 (315)
T 4asc_A           69 FLQFDHLDSEWLGMPPLPSPR-------CLFGL-GEAL-----NSIYVVGGREIK--DGERCLDSVMCYDRLSFKWGESD  133 (315)
T ss_dssp             EEEEETTTTEEEECCCBSSCE-------ESCEE-EEET-----TEEEEECCEESS--TTCCBCCCEEEEETTTTEEEECC
T ss_pred             eEEecCCCCeEEECCCCCcch-------hceeE-EEEC-----CEEEEEeCCcCC--CCCcccceEEEECCCCCcEeECC
Confidence            789999999999998876431       11111 1121     256666442110  11234557899999999999998


Q ss_pred             ccC------ceEEEE-EEEEEEEecC--CCceEEEEEECCCcceeEec-CCCCCCceeEEEEeCCeEEEEec-C-CCCEE
Q 039648          107 GHQ------LDRYFK-VCYWLVIADT--RDLKVILSFHMDNEVFEEIK-IPPHVNYYSSISLYEDSLSIVIP-D-AEQCF  174 (254)
Q Consensus       107 ~~p------~~v~~~-~lyWl~~~~~--~~~~~IvsfD~~~e~~~~i~-~P~~~~~~~~l~~~~g~L~~~~~-~-~~~~~  174 (254)
                      .+|      ..+.++ .+|-+.....  .....+..||+++++|+.++ +|... .....+..+++|.++.. . ....-
T Consensus       134 ~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r-~~~~~~~~~~~iyv~GG~~~~~~~~  212 (315)
T 4asc_A          134 PLPYVVYGHTVLSHMDLVYVIGGKGSDRKCLNKMCVYDPKKFEWKELAPMQTAR-SLFGATVHDGRIIVAAGVTDTGLTS  212 (315)
T ss_dssp             CCSSCCBSCEEEEETTEEEEECCBCTTSCBCCCEEEEETTTTEEEECCCCSSCC-BSCEEEEETTEEEEEEEECSSSEEE
T ss_pred             CCCCcccceeEEEECCEEEEEeCCCCCCcccceEEEEeCCCCeEEECCCCCCch-hceEEEEECCEEEEEeccCCCCccc
Confidence            764      345667 8887754311  11357999999999999884 44333 44567788999999984 2 22344


Q ss_pred             EEEEECC-CcceEEEEEecCCCcceeeEEEEeCCeEEEEeCcc-----------ccCCEEEEEECCCCcEEEE
Q 039648          175 EIWVMND-NKCWAKHLTLGPFFNFRINFGFWKNDAFFIESNSR-----------IYGGCLFLHEHRTKEIKNL  235 (254)
Q Consensus       175 ~IW~l~~-~~~W~~~~~i~~~~~~~~~~~~~~~g~i~l~~~~~-----------~~~~~~~~yd~~t~~~~~~  235 (254)
                      ++|+++- ...|+++-.++... ....+. .-++.|++.-...           .....+..||+++++|+.+
T Consensus       213 ~~~~yd~~~~~W~~~~~~p~~r-~~~~~~-~~~~~l~v~GG~~~~~~~~~~~~~~~~~~v~~yd~~~~~W~~~  283 (315)
T 4asc_A          213 SAEVYSITDNKWAPFEAFPQER-SSLSLV-SLVGTLYAIGGFATLETESGELVPTELNDIWRYNEEEKKWEGV  283 (315)
T ss_dssp             EEEEEETTTTEEEEECCCSSCC-BSCEEE-EETTEEEEEEEEEEEECTTSCEEEEEEEEEEEEETTTTEEEEE
T ss_pred             eEEEEECCCCeEEECCCCCCcc-cceeEE-EECCEEEEECCccccCcCCccccccccCcEEEecCCCChhhhh
Confidence            7888876 68999986554322 111222 2255665543210           0013578999999999988

>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}

Probab=98.95  E-value=1.6e-07  Score=79.53  Aligned_cols=190  Identities=11%  Similarity=0.054  Sum_probs=120.5

Q ss_pred             EEEEcCcccccccCCCCCCCCCCCCCCCCcceEEEEeeCCCCCeEEEEEeeeeccccccCCCcCeEEEEEccCCceeecc
Q 039648           27 LTIWNPATREFRNLPNYKYCNSSNRLIPPSTFICLESDPINNDFKLLFVHNLWNEKRKRYGKVPNVQVYGFRTNSWREVH  106 (254)
Q Consensus        27 ~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~g~g~d~~~~~yKVv~~~~~~~~~~~~~~~~~~~~Vys~~~~~Wr~~~  106 (254)
                      ++++||.|++|..+|+.|..+       ..+... .++     =||+.+......   +......+++|+..+++|+.+.
T Consensus        80 ~~~~d~~~~~W~~~~~~p~~r-------~~~~~~-~~~-----~~iyv~GG~~~~---~~~~~~~~~~yd~~~~~W~~~~  143 (318)
T 2woz_A           80 FFQLDNVSSEWVGLPPLPSAR-------CLFGLG-EVD-----DKIYVVAGKDLQ---TEASLDSVLCYDPVAAKWSEVK  143 (318)
T ss_dssp             EEEEETTTTEEEECSCBSSCB-------CSCEEE-EET-----TEEEEEEEEBTT---TCCEEEEEEEEETTTTEEEEEC
T ss_pred             EEEEeCCCCcEEECCCCCccc-------cccceE-EEC-----CEEEEEcCccCC---CCcccceEEEEeCCCCCEeECC
Confidence            789999999999998766531       111111 122     256665442110   1123457899999999999987


Q ss_pred             ccC------ceEEEE-EEEEEEEecC--CCceEEEEEECCCcceeEec-CCCCCCceeEEEEeCCeEEEEecC--CCCEE
Q 039648          107 GHQ------LDRYFK-VCYWLVIADT--RDLKVILSFHMDNEVFEEIK-IPPHVNYYSSISLYEDSLSIVIPD--AEQCF  174 (254)
Q Consensus       107 ~~p------~~v~~~-~lyWl~~~~~--~~~~~IvsfD~~~e~~~~i~-~P~~~~~~~~l~~~~g~L~~~~~~--~~~~~  174 (254)
                      .+|      ..+..+ .+|-+.....  .....+..||+++++|+.++ +|... .....+..+|+|.++...  ....-
T Consensus       144 ~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r-~~~~~~~~~~~iyv~GG~~~~~~~~  222 (318)
T 2woz_A          144 NLPIKVYGHNVISHNGMIYCLGGKTDDKKCTNRVFIYNPKKGDWKDLAPMKTPR-SMFGVAIHKGKIVIAGGVTEDGLSA  222 (318)
T ss_dssp             CCSSCEESCEEEEETTEEEEECCEESSSCBCCCEEEEETTTTEEEEECCCSSCC-BSCEEEEETTEEEEEEEEETTEEEE
T ss_pred             CCCCcccccEEEEECCEEEEEcCCCCCCCccceEEEEcCCCCEEEECCCCCCCc-ccceEEEECCEEEEEcCcCCCCccc
Confidence            664      345666 8887754321  11346999999999999984 44332 445667889999999842  22235


Q ss_pred             EEEEECC-CcceEEEEEecCCCcceeeEEEEeCCeEEEEeCcc-----------ccCCEEEEEECCCCcEEEE
Q 039648          175 EIWVMND-NKCWAKHLTLGPFFNFRINFGFWKNDAFFIESNSR-----------IYGGCLFLHEHRTKEIKNL  235 (254)
Q Consensus       175 ~IW~l~~-~~~W~~~~~i~~~~~~~~~~~~~~~g~i~l~~~~~-----------~~~~~~~~yd~~t~~~~~~  235 (254)
                      ++|+++- ...|+++..++... ....+. ..++.|++.-...           .....+..||+++++|+.+
T Consensus       223 ~~~~yd~~~~~W~~~~~~p~~r-~~~~~~-~~~~~i~v~GG~~~~~~~~~~~~~~~~~~v~~yd~~~~~W~~~  293 (318)
T 2woz_A          223 SVEAFDLKTNKWEVMTEFPQER-SSISLV-SLAGSLYAIGGFAMIQLESKEFAPTEVNDIWKYEDDKKEWAGM  293 (318)
T ss_dssp             EEEEEETTTCCEEECCCCSSCC-BSCEEE-EETTEEEEECCBCCBC----CCBCCBCCCEEEEETTTTEEEEE
T ss_pred             eEEEEECCCCeEEECCCCCCcc-cceEEE-EECCEEEEECCeeccCCCCceeccceeeeEEEEeCCCCEehhh
Confidence            6888776 68899976555332 112222 2356666653310           0124689999999999988

>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}

Probab=98.78  E-value=1.7e-06  Score=72.47  Aligned_cols=191  Identities=8%  Similarity=0.038  Sum_probs=120.6

Q ss_pred             ccEEEEcCcccccccCCCCCCCCCCCCCCCCcceEEEEeeCCCCCeEEEEEeeeeccccccCCCcCeEEEEEccCCc---
Q 039648           25 NRLTIWNPATREFRNLPNYKYCNSSNRLIPPSTFICLESDPINNDFKLLFVHNLWNEKRKRYGKVPNVQVYGFRTNS---  101 (254)
Q Consensus        25 ~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~g~g~d~~~~~yKVv~~~~~~~~~~~~~~~~~~~~Vys~~~~~---  101 (254)
                      .+++++||.|++|..+|..|..  +     ..+. ...++     =+|+.+....     +......+++|+..++.   
T Consensus        31 ~~~~~~d~~~~~W~~~~~~p~~--r-----~~~~-~~~~~-----~~l~v~GG~~-----~~~~~~~~~~~d~~~~~~~~   92 (301)
T 2vpj_A           31 DVVEKYDPKTQEWSFLPSITRK--R-----RYVA-SVSLH-----DRIYVIGGYD-----GRSRLSSVECLDYTADEDGV   92 (301)
T ss_dssp             CCEEEEETTTTEEEECCCCSSC--C-----BSCE-EEEET-----TEEEEECCBC-----SSCBCCCEEEEETTCCTTCC
T ss_pred             eEEEEEcCCCCeEEeCCCCChh--h-----cccc-EEEEC-----CEEEEEcCCC-----CCccCceEEEEECCCCCCCe
Confidence            3579999999999999876542  1     1111 11222     1566554321     12234578999999999   


Q ss_pred             eeeccccC------ceEEEE-EEEEEEEecCC-CceEEEEEECCCcceeEe-cCCCCCCceeEEEEeCCeEEEEecC--C
Q 039648          102 WREVHGHQ------LDRYFK-VCYWLVIADTR-DLKVILSFHMDNEVFEEI-KIPPHVNYYSSISLYEDSLSIVIPD--A  170 (254)
Q Consensus       102 Wr~~~~~p------~~v~~~-~lyWl~~~~~~-~~~~IvsfD~~~e~~~~i-~~P~~~~~~~~l~~~~g~L~~~~~~--~  170 (254)
                      |+.+..+|      ..+.++ .+|-+...... ....+..||+.+.+|+.+ ++|... .....+..+|+|.++...  .
T Consensus        93 W~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r-~~~~~~~~~~~iyv~GG~~~~  171 (301)
T 2vpj_A           93 WYSVAPMNVRRGLAGATTLGDMIYVSGGFDGSRRHTSMERYDPNIDQWSMLGDMQTAR-EGAGLVVASGVIYCLGGYDGL  171 (301)
T ss_dssp             CEEECCCSSCCBSCEEEEETTEEEEECCBCSSCBCCEEEEEETTTTEEEEEEECSSCC-BSCEEEEETTEEEEECCBCSS
T ss_pred             eEECCCCCCCccceeEEEECCEEEEEcccCCCcccceEEEEcCCCCeEEECCCCCCCc-ccceEEEECCEEEEECCCCCC
Confidence            99997763      345667 88876533221 135799999999999988 344333 445667789999998842  1


Q ss_pred             CCEEEEEEECC-CcceEEEEEecCCCcceeeEEEEeCCeEEEEeCcc--ccCCEEEEEECCCCcEEEEE
Q 039648          171 EQCFEIWVMND-NKCWAKHLTLGPFFNFRINFGFWKNDAFFIESNSR--IYGGCLFLHEHRTKEIKNLQ  236 (254)
Q Consensus       171 ~~~~~IW~l~~-~~~W~~~~~i~~~~~~~~~~~~~~~g~i~l~~~~~--~~~~~~~~yd~~t~~~~~~~  236 (254)
                      ...-++|+++- ...|+++-.++... . ..-.+.-++.|++.-...  .....+..||+++++|+.+.
T Consensus       172 ~~~~~~~~~d~~~~~W~~~~~~p~~r-~-~~~~~~~~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~~~~  238 (301)
T 2vpj_A          172 NILNSVEKYDPHTGHWTNVTPMATKR-S-GAGVALLNDHIYVVGGFDGTAHLSSVEAYNIRTDSWTTVT  238 (301)
T ss_dssp             CBCCCEEEEETTTTEEEEECCCSSCC-B-SCEEEEETTEEEEECCBCSSSBCCCEEEEETTTTEEEEEC
T ss_pred             cccceEEEEeCCCCcEEeCCCCCccc-c-cceEEEECCEEEEEeCCCCCcccceEEEEeCCCCcEEECC
Confidence            22345777775 68999985554322 1 112222366776664321  01246899999999999874

>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}

Probab=98.74  E-value=1.5e-06  Score=73.00  Aligned_cols=190  Identities=8%  Similarity=0.018  Sum_probs=120.1

Q ss_pred             ccEEEEcCcccccccCCCCCCCCCCCCCCCCcceEEEEeeCCCCCeEEEEEeeeeccccccCCCcCeEEEEEccCCceee
Q 039648           25 NRLTIWNPATREFRNLPNYKYCNSSNRLIPPSTFICLESDPINNDFKLLFVHNLWNEKRKRYGKVPNVQVYGFRTNSWRE  104 (254)
Q Consensus        25 ~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~g~g~d~~~~~yKVv~~~~~~~~~~~~~~~~~~~~Vys~~~~~Wr~  104 (254)
                      .++.++||.|++|..+++.|..+       ..+... .++.     +|+.+....      ......+++|+..+++|+.
T Consensus        24 ~~~~~~d~~~~~W~~~~~~p~~r-------~~~~~~-~~~~-----~lyv~GG~~------~~~~~~~~~~d~~~~~W~~   84 (306)
T 3ii7_A           24 QSCRYFNPKDYSWTDIRCPFEKR-------RDAACV-FWDN-----VVYILGGSQ------LFPIKRMDCYNVVKDSWYS   84 (306)
T ss_dssp             TSEEEEETTTTEEEECCCCSCCC-------BSCEEE-EETT-----EEEEECCBS------SSBCCEEEEEETTTTEEEE
T ss_pred             ceEEEecCCCCCEecCCCCCccc-------ceeEEE-EECC-----EEEEEeCCC------CCCcceEEEEeCCCCeEEE
Confidence            35799999999999998766531       112222 2221     455554321      1234578999999999999


Q ss_pred             ccccC------ceEEEE-EEEEEEEec-C-CCceEEEEEECCCcceeEe-cCCCCCCceeEEEEeCCeEEEEec--CCCC
Q 039648          105 VHGHQ------LDRYFK-VCYWLVIAD-T-RDLKVILSFHMDNEVFEEI-KIPPHVNYYSSISLYEDSLSIVIP--DAEQ  172 (254)
Q Consensus       105 ~~~~p------~~v~~~-~lyWl~~~~-~-~~~~~IvsfD~~~e~~~~i-~~P~~~~~~~~l~~~~g~L~~~~~--~~~~  172 (254)
                      +..+|      ..+.++ .+|-+.... . .....+..||+.+.+|+.+ ++|... .....+..+|+|.++..  ....
T Consensus        85 ~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r-~~~~~~~~~~~iyv~GG~~~~~~  163 (306)
T 3ii7_A           85 KLGPPTPRDSLAACAAEGKIYTSGGSEVGNSALYLFECYDTRTESWHTKPSMLTQR-CSHGMVEANGLIYVCGGSLGNNV  163 (306)
T ss_dssp             EECCSSCCBSCEEEEETTEEEEECCBBTTBSCCCCEEEEETTTTEEEEECCCSSCC-BSCEEEEETTEEEEECCEESCTT
T ss_pred             CCCCCccccceeEEEECCEEEEECCCCCCCcEeeeEEEEeCCCCceEeCCCCcCCc-ceeEEEEECCEEEEECCCCCCCC
Confidence            87764      345667 888765432 1 1235789999999999998 344333 44566778999999883  1111


Q ss_pred             ----EEEEEEECC-CcceEEEEEecCCCcceeeEEEEeCCeEEEEeCcc--ccCCEEEEEECCCCcEEEEE
Q 039648          173 ----CFEIWVMND-NKCWAKHLTLGPFFNFRINFGFWKNDAFFIESNSR--IYGGCLFLHEHRTKEIKNLQ  236 (254)
Q Consensus       173 ----~~~IW~l~~-~~~W~~~~~i~~~~~~~~~~~~~~~g~i~l~~~~~--~~~~~~~~yd~~t~~~~~~~  236 (254)
                          .-++|+++- ...|+++-.++... ...-. +.-++.|++.-...  .....+..||+++++|+.+.
T Consensus       164 ~~~~~~~~~~yd~~~~~W~~~~~~p~~r-~~~~~-~~~~~~i~v~GG~~~~~~~~~~~~yd~~~~~W~~~~  232 (306)
T 3ii7_A          164 SGRVLNSCEVYDPATETWTELCPMIEAR-KNHGL-VFVKDKIFAVGGQNGLGGLDNVEYYDIKLNEWKMVS  232 (306)
T ss_dssp             TCEECCCEEEEETTTTEEEEECCCSSCC-BSCEE-EEETTEEEEECCEETTEEBCCEEEEETTTTEEEECC
T ss_pred             cccccceEEEeCCCCCeEEECCCccchh-hcceE-EEECCEEEEEeCCCCCCCCceEEEeeCCCCcEEECC
Confidence                445777765 68999886554322 11122 22366666653310  01246899999999999873

>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}

Probab=98.74  E-value=2.3e-06  Score=71.69  Aligned_cols=190  Identities=8%  Similarity=0.050  Sum_probs=120.1

Q ss_pred             cEEEEcCcccccccCCCCCCCCCCCCCCCCcceEEEEeeCCCCCeEEEEEeeeeccccccCCCcCeEEEEEccCCceeec
Q 039648           26 RLTIWNPATREFRNLPNYKYCNSSNRLIPPSTFICLESDPINNDFKLLFVHNLWNEKRKRYGKVPNVQVYGFRTNSWREV  105 (254)
Q Consensus        26 ~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~g~g~d~~~~~yKVv~~~~~~~~~~~~~~~~~~~~Vys~~~~~Wr~~  105 (254)
                      .+.++||.+++|..+++.|..+       ..+.. ..++     =+|+.+.....     ......+++|+..+++|+.+
T Consensus        31 ~~~~~d~~~~~W~~~~~~p~~r-------~~~~~-~~~~-----~~lyv~GG~~~-----~~~~~~~~~~d~~~~~W~~~   92 (302)
T 2xn4_A           31 SVECYDFKEERWHQVAELPSRR-------CRAGM-VYMA-----GLVFAVGGFNG-----SLRVRTVDSYDPVKDQWTSV   92 (302)
T ss_dssp             CEEEEETTTTEEEEECCCSSCC-------BSCEE-EEET-----TEEEEESCBCS-----SSBCCCEEEEETTTTEEEEE
T ss_pred             cEEEEcCcCCcEeEcccCCccc-------ccceE-EEEC-----CEEEEEeCcCC-----CccccceEEECCCCCceeeC
Confidence            4699999999999998765431       11111 1121     24555543211     12345789999999999999


Q ss_pred             cccC------ceEEEE-EEEEEEEecCC-CceEEEEEECCCcceeEec-CCCCCCceeEEEEeCCeEEEEecC--CC--C
Q 039648          106 HGHQ------LDRYFK-VCYWLVIADTR-DLKVILSFHMDNEVFEEIK-IPPHVNYYSSISLYEDSLSIVIPD--AE--Q  172 (254)
Q Consensus       106 ~~~p------~~v~~~-~lyWl~~~~~~-~~~~IvsfD~~~e~~~~i~-~P~~~~~~~~l~~~~g~L~~~~~~--~~--~  172 (254)
                      ..+|      ..+.++ .+|-+...... ....+..||+.+++|+.++ +|... .....+..+|+|.++...  ..  .
T Consensus        93 ~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r-~~~~~~~~~~~iyv~GG~~~~~~~~  171 (302)
T 2xn4_A           93 ANMRDRRSTLGAAVLNGLLYAVGGFDGSTGLSSVEAYNIKSNEWFHVAPMNTRR-SSVGVGVVGGLLYAVGGYDVASRQC  171 (302)
T ss_dssp             CCCSSCCBSCEEEEETTEEEEEEEECSSCEEEEEEEEETTTTEEEEECCCSSCC-BSCEEEEETTEEEEECCEETTTTEE
T ss_pred             CCCCccccceEEEEECCEEEEEcCCCCCccCceEEEEeCCCCeEeecCCCCCcc-cCceEEEECCEEEEEeCCCCCCCcc
Confidence            8774      345667 88877654322 1257899999999999984 34332 445667789999999841  11  1


Q ss_pred             EEEEEEECC-CcceEEEEEecCCCcceeeEEEEeCCeEEEEeCcc--ccCCEEEEEECCCCcEEEEE
Q 039648          173 CFEIWVMND-NKCWAKHLTLGPFFNFRINFGFWKNDAFFIESNSR--IYGGCLFLHEHRTKEIKNLQ  236 (254)
Q Consensus       173 ~~~IW~l~~-~~~W~~~~~i~~~~~~~~~~~~~~~g~i~l~~~~~--~~~~~~~~yd~~t~~~~~~~  236 (254)
                      .-++|+++- ...|+++-.++... ..... +.-++.|++.-...  .....+..||+++++|+.+.
T Consensus       172 ~~~~~~yd~~~~~W~~~~~~p~~r-~~~~~-~~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~  236 (302)
T 2xn4_A          172 LSTVECYNATTNEWTYIAEMSTRR-SGAGV-GVLNNLLYAVGGHDGPLVRKSVEVYDPTTNAWRQVA  236 (302)
T ss_dssp             CCCEEEEETTTTEEEEECCCSSCC-BSCEE-EEETTEEEEECCBSSSSBCCCEEEEETTTTEEEEEC
T ss_pred             ccEEEEEeCCCCcEEECCCCcccc-ccccE-EEECCEEEEECCCCCCcccceEEEEeCCCCCEeeCC
Confidence            235777775 68999986554322 11222 22366776664311  01246999999999999874

>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}

Probab=98.71  E-value=2e-06  Score=72.56  Aligned_cols=196  Identities=9%  Similarity=0.044  Sum_probs=116.5

Q ss_pred             cEEEEcCcccccccCCCCCCCCCCCCCCCCcceEEEEeeCCCCCeEEEEEeeeeccc-cccCCCcCeEEEEEccCCceee
Q 039648           26 RLTIWNPATREFRNLPNYKYCNSSNRLIPPSTFICLESDPINNDFKLLFVHNLWNEK-RKRYGKVPNVQVYGFRTNSWRE  104 (254)
Q Consensus        26 ~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~g~g~d~~~~~yKVv~~~~~~~~~-~~~~~~~~~~~Vys~~~~~Wr~  104 (254)
                      .+.++||.|++|.. ++.+...++       ...+...  . + =+|+.+....... .........+++|+..+++|+.
T Consensus        14 ~~~~yd~~~~~W~~-~~~~~p~~r-------~~~~~~~--~-~-~~iyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~   81 (315)
T 4asc_A           14 GAVAYDPAANECYC-ASLSSQVPK-------NHVSLVT--K-E-NQVFVAGGLFYNEDNKEDPMSAYFLQFDHLDSEWLG   81 (315)
T ss_dssp             EEEEEETTTTEEEE-EECCCCSCS-------SEEEEEC--T-T-CCEEEEEEEEECSSCSSSCEEEEEEEEETTTTEEEE
T ss_pred             ceEEECCCCCeEec-CCCCCCCCc-------cceEEEE--E-C-CEEEEEcCcccCCCCCccccccceEEecCCCCeEEE
Confidence            46999999999986 333221121       1122221  1 1 1344444321110 0001122348899999999999


Q ss_pred             ccccC------ceEEEE-EEEEEEEec----CCCceEEEEEECCCcceeEe-cCCCCCCceeEEEEeCCeEEEEecC---
Q 039648          105 VHGHQ------LDRYFK-VCYWLVIAD----TRDLKVILSFHMDNEVFEEI-KIPPHVNYYSSISLYEDSLSIVIPD---  169 (254)
Q Consensus       105 ~~~~p------~~v~~~-~lyWl~~~~----~~~~~~IvsfD~~~e~~~~i-~~P~~~~~~~~l~~~~g~L~~~~~~---  169 (254)
                      +..+|      ..+.++ .+|-+....    ......+..||+.+.+|+.+ ++|... .....+..+++|.++...   
T Consensus        82 ~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r-~~~~~~~~~~~iyv~GG~~~~  160 (315)
T 4asc_A           82 MPPLPSPRCLFGLGEALNSIYVVGGREIKDGERCLDSVMCYDRLSFKWGESDPLPYVV-YGHTVLSHMDLVYVIGGKGSD  160 (315)
T ss_dssp             CCCBSSCEESCEEEEETTEEEEECCEESSTTCCBCCCEEEEETTTTEEEECCCCSSCC-BSCEEEEETTEEEEECCBCTT
T ss_pred             CCCCCcchhceeEEEECCEEEEEeCCcCCCCCcccceEEEECCCCCcEeECCCCCCcc-cceeEEEECCEEEEEeCCCCC
Confidence            87774      345667 888775432    11235789999999999988 444433 445667799999999842   


Q ss_pred             CCCEEEEEEECC-CcceEEEEEecCCCcceeeEEEEeCCeEEEEeCcc--ccCCEEEEEECCCCcEEEEE
Q 039648          170 AEQCFEIWVMND-NKCWAKHLTLGPFFNFRINFGFWKNDAFFIESNSR--IYGGCLFLHEHRTKEIKNLQ  236 (254)
Q Consensus       170 ~~~~~~IW~l~~-~~~W~~~~~i~~~~~~~~~~~~~~~g~i~l~~~~~--~~~~~~~~yd~~t~~~~~~~  236 (254)
                      ....-++|+++- ..+|+++-.++... ...-. +.-++.|++.-...  .....+..||+++++|+.+.
T Consensus       161 ~~~~~~~~~yd~~~~~W~~~~~~p~~r-~~~~~-~~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~  228 (315)
T 4asc_A          161 RKCLNKMCVYDPKKFEWKELAPMQTAR-SLFGA-TVHDGRIIVAAGVTDTGLTSSAEVYSITDNKWAPFE  228 (315)
T ss_dssp             SCBCCCEEEEETTTTEEEECCCCSSCC-BSCEE-EEETTEEEEEEEECSSSEEEEEEEEETTTTEEEEEC
T ss_pred             CcccceEEEEeCCCCeEEECCCCCCch-hceEE-EEECCEEEEEeccCCCCccceEEEEECCCCeEEECC
Confidence            122346777776 68899876554322 11112 22366666654310  00236899999999999884

>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A

Probab=98.70  E-value=9.8e-07  Score=74.38  Aligned_cols=194  Identities=9%  Similarity=0.013  Sum_probs=119.3

Q ss_pred             cEEEEcCcccccccCCCCCCCCCCCCCCCCcceEEEEeeCCCCCeEEEEEeeeeccccccCCCcCeEEEEEccCCceeec
Q 039648           26 RLTIWNPATREFRNLPNYKYCNSSNRLIPPSTFICLESDPINNDFKLLFVHNLWNEKRKRYGKVPNVQVYGFRTNSWREV  105 (254)
Q Consensus        26 ~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~g~g~d~~~~~yKVv~~~~~~~~~~~~~~~~~~~~Vys~~~~~Wr~~  105 (254)
                      .+.++||.|++|..+++.|..+       ...... .++     =+|+.+...... .........+++|+..++.|+.+
T Consensus        40 ~~~~~d~~~~~W~~~~~~p~~r-------~~~~~~-~~~-----~~lyv~GG~~~~-~~~~~~~~~~~~~d~~~~~W~~~  105 (308)
T 1zgk_A           40 YLEAYNPSNGTWLRLADLQVPR-------SGLAGC-VVG-----GLLYAVGGRNNS-PDGNTDSSALDCYNPMTNQWSPC  105 (308)
T ss_dssp             CEEEEETTTTEEEECCCCSSCC-------BSCEEE-EET-----TEEEEECCEEEE-TTEEEECCCEEEEETTTTEEEEC
T ss_pred             eEEEEcCCCCeEeECCCCCccc-------ccceEE-EEC-----CEEEEECCCcCC-CCCCeecceEEEECCCCCeEeEC
Confidence            4799999999999998765531       111111 111     245555432100 00012235789999999999999


Q ss_pred             cccC------ceEEEE-EEEEEEEecCC-CceEEEEEECCCcceeEe-cCCCCCCceeEEEEeCCeEEEEecC--CCCEE
Q 039648          106 HGHQ------LDRYFK-VCYWLVIADTR-DLKVILSFHMDNEVFEEI-KIPPHVNYYSSISLYEDSLSIVIPD--AEQCF  174 (254)
Q Consensus       106 ~~~p------~~v~~~-~lyWl~~~~~~-~~~~IvsfD~~~e~~~~i-~~P~~~~~~~~l~~~~g~L~~~~~~--~~~~~  174 (254)
                      ..+|      ..+.++ .+|-+...... ....+..||+.+++|+.+ ++|... .....+..+++|.++...  ....-
T Consensus       106 ~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r-~~~~~~~~~~~iyv~GG~~~~~~~~  184 (308)
T 1zgk_A          106 APMSVPRNRIGVGVIDGHIYAVGGSHGCIHHNSVERYEPERDEWHLVAPMLTRR-IGVGVAVLNRLLYAVGGFDGTNRLN  184 (308)
T ss_dssp             CCCSSCCBTCEEEEETTEEEEECCEETTEECCCEEEEETTTTEEEECCCCSSCC-BSCEEEEETTEEEEECCBCSSCBCC
T ss_pred             CCCCcCccccEEEEECCEEEEEcCCCCCcccccEEEECCCCCeEeECCCCCccc-cceEEEEECCEEEEEeCCCCCCcCc
Confidence            8763      345667 88877432211 124689999999999988 444433 345567779999999842  12234


Q ss_pred             EEEEECC-CcceEEEEEecCCCcceeeEEEEeCCeEEEEeCcc--ccCCEEEEEECCCCcEEEEE
Q 039648          175 EIWVMND-NKCWAKHLTLGPFFNFRINFGFWKNDAFFIESNSR--IYGGCLFLHEHRTKEIKNLQ  236 (254)
Q Consensus       175 ~IW~l~~-~~~W~~~~~i~~~~~~~~~~~~~~~g~i~l~~~~~--~~~~~~~~yd~~t~~~~~~~  236 (254)
                      ++|+++- ...|+++-.++... ...-.. .-++.|++.-...  .....+..||+++++|+.+.
T Consensus       185 ~~~~yd~~~~~W~~~~~~p~~r-~~~~~~-~~~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~  247 (308)
T 1zgk_A          185 SAECYYPERNEWRMITAMNTIR-SGAGVC-VLHNCIYAAGGYDGQDQLNSVERYDVETETWTFVA  247 (308)
T ss_dssp             CEEEEETTTTEEEECCCCSSCC-BSCEEE-EETTEEEEECCBCSSSBCCCEEEEETTTTEEEECC
T ss_pred             eEEEEeCCCCeEeeCCCCCCcc-ccceEE-EECCEEEEEeCCCCCCccceEEEEeCCCCcEEECC
Confidence            5677665 68999876554322 111222 2366777664311  01256999999999999774

>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}

Probab=98.68  E-value=2e-06  Score=73.86  Aligned_cols=216  Identities=12%  Similarity=0.080  Sum_probs=122.6

Q ss_pred             EeccCceEEEEEc-CCccEEEEcCcc--cccccCCCCCCCCCCCCCCCCcceEEEEeeCCCCCeEEEEEeeeeccccccC
Q 039648           10 VGYHDGLFCIMQS-STNRLTIWNPAT--REFRNLPNYKYCNSSNRLIPPSTFICLESDPINNDFKLLFVHNLWNEKRKRY   86 (254)
Q Consensus        10 ~~scnGLlcl~~~-~~~~~~V~NP~T--~~~~~LP~~~~~~~~~~~~~~~~~~g~g~d~~~~~yKVv~~~~~~~~~~~~~   86 (254)
                      ....+|-|.+... .+.+++++||.+  ++|..+|+.|.. ++     ..+. ...++.     ||+.+...........
T Consensus        15 ~~~~~~~iyv~GG~~~~~~~~~d~~~~~~~W~~~~~~p~~-~R-----~~~~-~~~~~~-----~lyv~GG~~~~~~~~~   82 (357)
T 2uvk_A           15 GAIDNDTVYIGLGSAGTAWYKLDTQAKDKKWTALAAFPGG-PR-----DQAT-SAFIDG-----NLYVFGGIGKNSEGLT   82 (357)
T ss_dssp             EEEETTEEEEECGGGTTCEEEEETTSSSCCEEECCCCTTC-CC-----BSCE-EEEETT-----EEEEECCEEECTTSCE
T ss_pred             EEEECCEEEEEeCcCCCeEEEEccccCCCCeeECCCCCCC-cC-----ccce-EEEECC-----EEEEEcCCCCCCCccc
Confidence            3344776655442 234579999984  999999886621 11     1111 122221     5666644211000001


Q ss_pred             CCcCeEEEEEccCCceeecccc-C------ceEEEE-EEEEEEEecCC--------------------------------
Q 039648           87 GKVPNVQVYGFRTNSWREVHGH-Q------LDRYFK-VCYWLVIADTR--------------------------------  126 (254)
Q Consensus        87 ~~~~~~~Vys~~~~~Wr~~~~~-p------~~v~~~-~lyWl~~~~~~--------------------------------  126 (254)
                      .....+++|+..+++|+.+..+ |      ..+..+ .+|-+......                                
T Consensus        83 ~~~~~v~~yd~~~~~W~~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  162 (357)
T 2uvk_A           83 QVFNDVHKYNPKTNSWVKLMSHAPMGMAGHVTFVHNGKAYVTGGVNQNIFNGYFEDLNEAGKDSTAIDKINAHYFDKKAE  162 (357)
T ss_dssp             EECCCEEEEETTTTEEEECSCCCSSCCSSEEEEEETTEEEEEECCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHSSCGG
T ss_pred             eeeccEEEEeCCCCcEEECCCCCCcccccceEEEECCEEEEEeCcCCCcCcccccchhhcCCcccchhhhhhhhcccccc
Confidence            2345789999999999998765 2      235566 88877532210                                


Q ss_pred             ---CceEEEEEECCCcceeEe-cCCCCCCceeEEEEeCCeEEEEecC---CCCEEEEEEEC---CCcceEEEEEecCCCc
Q 039648          127 ---DLKVILSFHMDNEVFEEI-KIPPHVNYYSSISLYEDSLSIVIPD---AEQCFEIWVMN---DNKCWAKHLTLGPFFN  196 (254)
Q Consensus       127 ---~~~~IvsfD~~~e~~~~i-~~P~~~~~~~~l~~~~g~L~~~~~~---~~~~~~IW~l~---~~~~W~~~~~i~~~~~  196 (254)
                         ....+..||+++.+|+.+ ++|........++..+++|.++...   ....-++|.++   +...|+++..++....
T Consensus       163 ~~~~~~~v~~yd~~~~~W~~~~~~p~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~~d~d~~~~~W~~~~~~~~~~~  242 (357)
T 2uvk_A          163 DYFFNKFLLSFDPSTQQWSYAGESPWYGTAGAAVVNKGDKTWLINGEAKPGLRTDAVFELDFTGNNLKWNKLAPVSSPDG  242 (357)
T ss_dssp             GGCCCCEEEEEETTTTEEEEEEECSSCCCBSCEEEEETTEEEEECCEEETTEECCCEEEEECC---CEEEECCCSSTTTC
T ss_pred             ccCCcccEEEEeCCCCcEEECCCCCCCCcccccEEEECCEEEEEeeecCCCcccCceEEEEecCCCCcEEecCCCCCCcc
Confidence               124799999999999988 4453321236678889999998841   11234567664   2678998766542221


Q ss_pred             ceeeEEEEeCCeEEEEeCcccc-------------------CCEEEEEECCCCcEEEEEE
Q 039648          197 FRINFGFWKNDAFFIESNSRIY-------------------GGCLFLHEHRTKEIKNLQV  237 (254)
Q Consensus       197 ~~~~~~~~~~g~i~l~~~~~~~-------------------~~~~~~yd~~t~~~~~~~~  237 (254)
                      ......+..++.|++.-.....                   -..+..||+++++|+.+.-
T Consensus       243 ~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~g~~~~~~~~~~~~~~~~yd~~~~~W~~~~~  302 (357)
T 2uvk_A          243 VAGGFAGISNDSLIFAGGAGFKGSRENYQNGKNYAHEGLKKSYSTDIHLWHNGKWDKSGE  302 (357)
T ss_dssp             CBSCEEEEETTEEEEECCEECTTHHHHHHTTCSSTTTTCCCEECCEEEECC---CEEEEE
T ss_pred             cccceEEEECCEEEEEcCccccCCcccccccceeccccccceeeEEEEecCCCceeeCCC
Confidence            1122223346677665431000                   0247899999999998843

>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}

Probab=98.51  E-value=2e-05  Score=66.46  Aligned_cols=206  Identities=9%  Similarity=0.081  Sum_probs=119.6

Q ss_pred             CceEEEEEcCCccEEEEcCcccccccCCCCCCCCCCCCCCCCcceEEEEeeCCCCCeEEEEEeeeeccccc-cCCCcCeE
Q 039648           14 DGLFCIMQSSTNRLTIWNPATREFRNLPNYKYCNSSNRLIPPSTFICLESDPINNDFKLLFVHNLWNEKRK-RYGKVPNV   92 (254)
Q Consensus        14 nGLlcl~~~~~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~g~g~d~~~~~yKVv~~~~~~~~~~~-~~~~~~~~   92 (254)
                      ++.+.+....  ...++||.|++|...|.+ ...++       ...+...  .  +=+|+.+.....+... .......+
T Consensus        15 ~~~i~~~GG~--~~~~yd~~~~~W~~~~~~-~~~~r-------~~~~~~~--~--~~~lyv~GG~~~~~~~~~~~~~~~~   80 (318)
T 2woz_A           15 KDLILLVNDT--AAVAYDPMENECYLTALA-EQIPR-------NHSSIVT--Q--QNQVYVVGGLYVDEENKDQPLQSYF   80 (318)
T ss_dssp             EEEEEEECSS--EEEEEETTTTEEEEEEEC-TTSCS-------SEEEEEC--S--SSCEEEEESSCC-------CCCBEE
T ss_pred             cchhhhcccc--ceEEECCCCCceecccCC-ccCCc-------cceEEEE--E--CCEEEEECCcccCccccCCCccccE
Confidence            4555544443  358999999999984422 21121       1122221  1  1234444331000000 01122348


Q ss_pred             EEEEccCCceeeccccC------ceEEEE-EEEEEEEecC---CCceEEEEEECCCcceeEe-cCCCCCCceeEEEEeCC
Q 039648           93 QVYGFRTNSWREVHGHQ------LDRYFK-VCYWLVIADT---RDLKVILSFHMDNEVFEEI-KIPPHVNYYSSISLYED  161 (254)
Q Consensus        93 ~Vys~~~~~Wr~~~~~p------~~v~~~-~lyWl~~~~~---~~~~~IvsfD~~~e~~~~i-~~P~~~~~~~~l~~~~g  161 (254)
                      ++|+..+++|+.+..+|      ..+.++ .+|-+.....   .....+..||+.+.+|+.+ ++|... .....+..+|
T Consensus        81 ~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r-~~~~~~~~~~  159 (318)
T 2woz_A           81 FQLDNVSSEWVGLPPLPSARCLFGLGEVDDKIYVVAGKDLQTEASLDSVLCYDPVAAKWSEVKNLPIKV-YGHNVISHNG  159 (318)
T ss_dssp             EEEETTTTEEEECSCBSSCBCSCEEEEETTEEEEEEEEBTTTCCEEEEEEEEETTTTEEEEECCCSSCE-ESCEEEEETT
T ss_pred             EEEeCCCCcEEECCCCCccccccceEEECCEEEEEcCccCCCCcccceEEEEeCCCCCEeECCCCCCcc-cccEEEEECC
Confidence            89999999999987764      345567 8888765431   1135799999999999998 444433 3445667899


Q ss_pred             eEEEEecC---CCCEEEEEEECC-CcceEEEEEecCCCcceeeEEEEeCCeEEEEeCccc--cCCEEEEEECCCCcEEEE
Q 039648          162 SLSIVIPD---AEQCFEIWVMND-NKCWAKHLTLGPFFNFRINFGFWKNDAFFIESNSRI--YGGCLFLHEHRTKEIKNL  235 (254)
Q Consensus       162 ~L~~~~~~---~~~~~~IW~l~~-~~~W~~~~~i~~~~~~~~~~~~~~~g~i~l~~~~~~--~~~~~~~yd~~t~~~~~~  235 (254)
                      +|.++...   ....-++|+++- ..+|+++-.++... ...... ..++.|++.-....  ....+..||+++++|+.+
T Consensus       160 ~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r-~~~~~~-~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~  237 (318)
T 2woz_A          160 MIYCLGGKTDDKKCTNRVFIYNPKKGDWKDLAPMKTPR-SMFGVA-IHKGKIVIAGGVTEDGLSASVEAFDLKTNKWEVM  237 (318)
T ss_dssp             EEEEECCEESSSCBCCCEEEEETTTTEEEEECCCSSCC-BSCEEE-EETTEEEEEEEEETTEEEEEEEEEETTTCCEEEC
T ss_pred             EEEEEcCCCCCCCccceEEEEcCCCCEEEECCCCCCCc-ccceEE-EECCEEEEEcCcCCCCccceEEEEECCCCeEEEC
Confidence            99998841   122345777776 68899986554322 111222 23566666543100  024578999999999987


Q ss_pred             E
Q 039648          236 Q  236 (254)
Q Consensus       236 ~  236 (254)
                      .
T Consensus       238 ~  238 (318)
T 2woz_A          238 T  238 (318)
T ss_dssp             C
T ss_pred             C
Confidence            4

>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*

Probab=98.32  E-value=1.2e-05  Score=75.54  Aligned_cols=198  Identities=8%  Similarity=0.060  Sum_probs=114.7

Q ss_pred             cEEEEcCcccccccCC-CCCCC-CCCCCCCCCcceEEEEeeCCCCCeEEEEEeeeeccccccCCCcCeEEEEEccCCcee
Q 039648           26 RLTIWNPATREFRNLP-NYKYC-NSSNRLIPPSTFICLESDPINNDFKLLFVHNLWNEKRKRYGKVPNVQVYGFRTNSWR  103 (254)
Q Consensus        26 ~~~V~NP~T~~~~~LP-~~~~~-~~~~~~~~~~~~~g~g~d~~~~~yKVv~~~~~~~~~~~~~~~~~~~~Vys~~~~~Wr  103 (254)
                      ++.++||.|++|..++ +.+.. .|..   ...+. ...+ .. + =+|+.+......    ......+++|+..++.|+
T Consensus       413 ~v~~yd~~~~~W~~~~~~~p~~~~p~~---R~~hs-~~~~-~~-~-~~lyv~GG~~~~----~~~~~dv~~yd~~t~~W~  481 (695)
T 2zwa_A          413 EILQLSIHYDKIDMKNIEVSSSEVPVA---RMCHT-FTTI-SR-N-NQLLLIGGRKAP----HQGLSDNWIFDMKTREWS  481 (695)
T ss_dssp             CEEEEEECSSCEEEEECCCCCSCCCCC---CBSCE-EEEE-TT-T-TEEEEECCBSST----TCBCCCCEEEETTTTEEE
T ss_pred             cEEEEECCCCeEEEeccCCCCCCCCcc---ccceE-EEEE-cc-C-CEEEEEcCCCCC----CCccccEEEEeCCCCcEE
Confidence            4799999999999998 52211 1110   11111 1122 10 1 246665432110    112346899999999999


Q ss_pred             eccccC------ceEEE-E-EEEEEEEecCCCceEEEEEECCCcceeEec----CCCCCCceeEEEEeC---CeEEEEec
Q 039648          104 EVHGHQ------LDRYF-K-VCYWLVIADTRDLKVILSFHMDNEVFEEIK----IPPHVNYYSSISLYE---DSLSIVIP  168 (254)
Q Consensus       104 ~~~~~p------~~v~~-~-~lyWl~~~~~~~~~~IvsfD~~~e~~~~i~----~P~~~~~~~~l~~~~---g~L~~~~~  168 (254)
                      .+..+|      ..+.+ + .+|-+...... . .+..||+++++|+.++    +|... .....+.++   |+|.++++
T Consensus       482 ~~~~~p~~R~~h~~~~~~~~~iyv~GG~~~~-~-~v~~yd~~t~~W~~~~~~g~~p~~r-~~~~a~v~~~~~~~iyv~GG  558 (695)
T 2zwa_A          482 MIKSLSHTRFRHSACSLPDGNVLILGGVTEG-P-AMLLYNVTEEIFKDVTPKDEFFQNS-LVSAGLEFDPVSKQGIILGG  558 (695)
T ss_dssp             ECCCCSBCCBSCEEEECTTSCEEEECCBCSS-C-SEEEEETTTTEEEECCCSSGGGGSC-CBSCEEEEETTTTEEEEECC
T ss_pred             ECCCCCCCcccceEEEEcCCEEEEECCCCCC-C-CEEEEECCCCceEEccCCCCCCCcc-cceeEEEEeCCCCEEEEECC
Confidence            998774      34444 6 78766433221 1 6999999999999986    34333 222323334   88999984


Q ss_pred             C--C--CCEEEEEEECC-Ccc------eEEEEEecCCCcceeeEEEEeCCeEEEEeCcc-----ccCCEEEEEECCCCcE
Q 039648          169 D--A--EQCFEIWVMND-NKC------WAKHLTLGPFFNFRINFGFWKNDAFFIESNSR-----IYGGCLFLHEHRTKEI  232 (254)
Q Consensus       169 ~--~--~~~~~IW~l~~-~~~------W~~~~~i~~~~~~~~~~~~~~~g~i~l~~~~~-----~~~~~~~~yd~~t~~~  232 (254)
                      .  .  ...-++|+++- ...      |+++..+++......-..+.+++.|++.-+..     .....+..||+++++|
T Consensus       559 ~~~~~~~~~~~v~~yd~~~~~w~~~~~W~~~~~~p~~~R~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~t~~W  638 (695)
T 2zwa_A          559 GFMDQTTVSDKAIIFKYDAENATEPITVIKKLQHPLFQRYGSQIKYITPRKLLIVGGTSPSGLFDRTNSIISLDPLSETL  638 (695)
T ss_dssp             BCTTSSCBCCEEEEEEECTTCSSCCEEEEEEEECGGGCCBSCEEEEEETTEEEEECCBCSSCCCCTTTSEEEEETTTTEE
T ss_pred             cCCCCCeeeCcEEEEEccCCccccceEEEEcCCCCCCCcccceEEEeCCCEEEEECCccCCCCCCCCCeEEEEECCCCeE
Confidence            2  1  12234555553 344      88887754332223334445547777664311     0135699999999999


Q ss_pred             EEEEE
Q 039648          233 KNLQV  237 (254)
Q Consensus       233 ~~~~~  237 (254)
                      +.+.+
T Consensus       639 ~~~~~  643 (695)
T 2zwa_A          639 TSIPI  643 (695)
T ss_dssp             EECCC
T ss_pred             EEeec
Confidence            96654

>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}

Probab=98.19  E-value=0.00069  Score=57.76  Aligned_cols=145  Identities=9%  Similarity=0.030  Sum_probs=86.1

Q ss_pred             cCeEEEEEccCCceeeccccC-------ceEEEE-EEEEEEEecCC--CceEEEEEEC--CCcceeEec-CCCCCC-cee
Q 039648           89 VPNVQVYGFRTNSWREVHGHQ-------LDRYFK-VCYWLVIADTR--DLKVILSFHM--DNEVFEEIK-IPPHVN-YYS  154 (254)
Q Consensus        89 ~~~~~Vys~~~~~Wr~~~~~p-------~~v~~~-~lyWl~~~~~~--~~~~IvsfD~--~~e~~~~i~-~P~~~~-~~~  154 (254)
                      ...+++|+..++.|+.+..+|       ..+.++ .+|-+......  ....+..||+  ++.+|+.++ +|.... ...
T Consensus       167 ~~~v~~yd~~~~~W~~~~~~p~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~~d~d~~~~~W~~~~~~~~~~~~~~~  246 (357)
T 2uvk_A          167 NKFLLSFDPSTQQWSYAGESPWYGTAGAAVVNKGDKTWLINGEAKPGLRTDAVFELDFTGNNLKWNKLAPVSSPDGVAGG  246 (357)
T ss_dssp             CCEEEEEETTTTEEEEEEECSSCCCBSCEEEEETTEEEEECCEEETTEECCCEEEEECC---CEEEECCCSSTTTCCBSC
T ss_pred             cccEEEEeCCCCcEEECCCCCCCCcccccEEEECCEEEEEeeecCCCcccCceEEEEecCCCCcEEecCCCCCCcccccc
Confidence            358999999999999987663       234556 88877432111  1235777887  888999873 333221 334


Q ss_pred             EEEEeCCeEEEEecCC-------------------CCEEEEEEECC-CcceEEEEEecCCCcceeeEEEEeCCeEEEEeC
Q 039648          155 SISLYEDSLSIVIPDA-------------------EQCFEIWVMND-NKCWAKHLTLGPFFNFRINFGFWKNDAFFIESN  214 (254)
Q Consensus       155 ~l~~~~g~L~~~~~~~-------------------~~~~~IW~l~~-~~~W~~~~~i~~~~~~~~~~~~~~~g~i~l~~~  214 (254)
                      ..+..+++|.++....                   ....++|+++- ..+|+++-.++.....  ...+.-++.|++.-.
T Consensus       247 ~~~~~~~~iyv~GG~~~~~~~~~~~~g~~~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~--~~~~~~~~~i~v~GG  324 (357)
T 2uvk_A          247 FAGISNDSLIFAGGAGFKGSRENYQNGKNYAHEGLKKSYSTDIHLWHNGKWDKSGELSQGRAY--GVSLPWNNSLLIIGG  324 (357)
T ss_dssp             EEEEETTEEEEECCEECTTHHHHHHTTCSSTTTTCCCEECCEEEECC---CEEEEECSSCCBS--SEEEEETTEEEEEEE
T ss_pred             eEEEECCEEEEEcCccccCCcccccccceeccccccceeeEEEEecCCCceeeCCCCCCCccc--ceeEEeCCEEEEEee
Confidence            5788899999988411                   11245677665 6899998776643311  122334667666543


Q ss_pred             cccc---CCEEEEEECCCCcEEEE
Q 039648          215 SRIY---GGCLFLHEHRTKEIKNL  235 (254)
Q Consensus       215 ~~~~---~~~~~~yd~~t~~~~~~  235 (254)
                      ....   -..+..++++++++...
T Consensus       325 ~~~~~~~~~~v~~l~~~~~~~~~~  348 (357)
T 2uvk_A          325 ETAGGKAVTDSVLITVKDNKVTVQ  348 (357)
T ss_dssp             ECGGGCEEEEEEEEEC-CCSCEEE
T ss_pred             eCCCCCEeeeEEEEEEcCcEeEee
Confidence            1100   13577899999988765

>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A

Probab=97.56  E-value=0.0046  Score=57.45  Aligned_cols=191  Identities=7%  Similarity=-0.060  Sum_probs=105.2

Q ss_pred             cEEEEcCcccccccCCCCCCCCCCCCCCCCcceEEEEeeCCCCCeEEEEEeeeeccccccCCCcCeEEEEEccCCceeec
Q 039648           26 RLTIWNPATREFRNLPNYKYCNSSNRLIPPSTFICLESDPINNDFKLLFVHNLWNEKRKRYGKVPNVQVYGFRTNSWREV  105 (254)
Q Consensus        26 ~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~g~g~d~~~~~yKVv~~~~~~~~~~~~~~~~~~~~Vys~~~~~Wr~~  105 (254)
                      .+.++||.|++|..++..+....       ....+..+..   +=||+.+...         ....+++|+..++.|+.+
T Consensus       220 ~~~~yd~~t~~w~~~~~~~~~~~-------~~~~~~~~~~---~g~lyv~GG~---------~~~~v~~yd~~t~~W~~~  280 (656)
T 1k3i_A          220 LTSSWDPSTGIVSDRTVTVTKHD-------MFCPGISMDG---NGQIVVTGGN---------DAKKTSLYDSSSDSWIPG  280 (656)
T ss_dssp             EEEEECTTTCCBCCCEEEECSCC-------CSSCEEEECT---TSCEEEECSS---------STTCEEEEEGGGTEEEEC
T ss_pred             EEEEEeCCCCcEEeCcccCCCCC-------CccccccCCC---CCCEEEeCCC---------CCCceEEecCcCCceeEC
Confidence            47899999999999986544211       1111222111   1134444321         112678888888888887


Q ss_pred             cccC------ceEEE-E-EEEEEEEecC--CCceEEEEEECCCcceeEec------CCCCCC-------c----------
Q 039648          106 HGHQ------LDRYF-K-VCYWLVIADT--RDLKVILSFHMDNEVFEEIK------IPPHVN-------Y----------  152 (254)
Q Consensus       106 ~~~p------~~v~~-~-~lyWl~~~~~--~~~~~IvsfD~~~e~~~~i~------~P~~~~-------~----------  152 (254)
                      ..+|      ..+.+ + .+|-+.....  .....+..||+++++|+.++      +|....       .          
T Consensus       281 ~~~~~~R~~~s~~~~~dg~iyv~GG~~~~~~~~~~~e~yd~~t~~W~~~~~~~~~p~~~~~~~~~~~~~~~iyv~Gg~~g  360 (656)
T 1k3i_A          281 PDMQVARGYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSSKTWTSLPNAKVNPMLTADKQGLYRSDNHAWLFGWKKG  360 (656)
T ss_dssp             CCCSSCCSSCEEEECTTSCEEEECCCCCSSSCCCCEEEEETTTTEEEEETTSCSGGGCCCCTTGGGTTTCSCCEEECGGG
T ss_pred             CCCCccccccceEEecCCeEEEEeCcccCCcccccceEeCCCCCcceeCCCccccccccccccceeecCCceEEEECCCC
Confidence            7663      23455 6 7776543111  11245777888888888762      222100       0          


Q ss_pred             --------------------------------------eeEEEE----eCCeEEEEecCC--------CCEEEEEEECC-
Q 039648          153 --------------------------------------YSSISL----YEDSLSIVIPDA--------EQCFEIWVMND-  181 (254)
Q Consensus       153 --------------------------------------~~~l~~----~~g~L~~~~~~~--------~~~~~IW~l~~-  181 (254)
                                                            ...-+.    .+|+|.++....        .....|++.+. 
T Consensus       361 ~~~~~~~~~~v~~yd~~~~~w~~~~~~~~~~~~~~~~~~~~~av~~~~~~~~i~v~GG~~~~~~~~~~~~~~~v~~yd~~  440 (656)
T 1k3i_A          361 SVFQAGPSTAMNWYYTSGSGDVKSAGKRQSNRGVAPDAMCGNAVMYDAVKGKILTFGGSPDYQDSDATTNAHIITLGEPG  440 (656)
T ss_dssp             CEEECCSSSEEEEEECSTTCEEEEEEECEETTEECCCCBTCEEEEEETTTTEEEEECCBSSSSSSBCCCCEEEEECCSTT
T ss_pred             cEEEecCccceeeeecCCcceeecCCccccccccCCCCCCCceEeccCCCCeEEEEeCCCCCCCCCcCCcceEEEcCCCC
Confidence                                                  001112    378888877311        12225666654 


Q ss_pred             CcceEEEE--EecCCCcceeeEEEEeCCeEEEEeCcc--------ccCCEEEEEECCCCcEEEEE
Q 039648          182 NKCWAKHL--TLGPFFNFRINFGFWKNDAFFIESNSR--------IYGGCLFLHEHRTKEIKNLQ  236 (254)
Q Consensus       182 ~~~W~~~~--~i~~~~~~~~~~~~~~~g~i~l~~~~~--------~~~~~~~~yd~~t~~~~~~~  236 (254)
                      ...|++..  .++... ...-..+..+|.|++.-...        .....+..||+++++|+.+.
T Consensus       441 ~~~W~~~~~~~mp~~R-~~~~~~~l~~g~i~v~GG~~~~~~~~~~~~~~~v~~ydp~t~~W~~~~  504 (656)
T 1k3i_A          441 TSPNTVFASNGLYFAR-TFHTSVVLPDGSTFITGGQRRGIPFEDSTPVFTPEIYVPEQDTFYKQN  504 (656)
T ss_dssp             SCCEEEECTTCCSSCC-BSCEEEECTTSCEEEECCBSBCCTTCCCSBCCCCEEEEGGGTEEEECC
T ss_pred             CCCeeEEccCCCCCCc-ccCCeEECCCCCEEEECCcccCcCcCCCCcccceEEEcCCCCceeecC
Confidence            67898875  444322 22223344477777765411        00245899999999998764

>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*

Probab=97.32  E-value=0.0028  Score=59.53  Aligned_cols=146  Identities=8%  Similarity=-0.040  Sum_probs=94.1

Q ss_pred             cCeEEEEEccCCceeecc-c-----cC------ceEEE--E-EEEEEEEecCCC--ceEEEEEECCCcceeEe-cCCCCC
Q 039648           89 VPNVQVYGFRTNSWREVH-G-----HQ------LDRYF--K-VCYWLVIADTRD--LKVILSFHMDNEVFEEI-KIPPHV  150 (254)
Q Consensus        89 ~~~~~Vys~~~~~Wr~~~-~-----~p------~~v~~--~-~lyWl~~~~~~~--~~~IvsfD~~~e~~~~i-~~P~~~  150 (254)
                      ...+++|+..+++|+.+. .     +|      ..+.+  + .+|-+.......  ...+..||+.+.+|+.+ ++|...
T Consensus       411 ~~~v~~yd~~~~~W~~~~~~~p~~~~p~~R~~hs~~~~~~~~~lyv~GG~~~~~~~~~dv~~yd~~t~~W~~~~~~p~~R  490 (695)
T 2zwa_A          411 VNEILQLSIHYDKIDMKNIEVSSSEVPVARMCHTFTTISRNNQLLLIGGRKAPHQGLSDNWIFDMKTREWSMIKSLSHTR  490 (695)
T ss_dssp             CCCEEEEEECSSCEEEEECCCCCSCCCCCCBSCEEEEETTTTEEEEECCBSSTTCBCCCCEEEETTTTEEEECCCCSBCC
T ss_pred             cCcEEEEECCCCeEEEeccCCCCCCCCccccceEEEEEccCCEEEEEcCCCCCCCccccEEEEeCCCCcEEECCCCCCCc
Confidence            346899999999999987 3     22      45677  8 888765432211  24688999999999988 344333


Q ss_pred             CceeEEEEe-CCeEEEEecCCCCEEEEEEECC-CcceEEEEEe---cCCCcceee-EEEEeC-CeEEEEeCcc----ccC
Q 039648          151 NYYSSISLY-EDSLSIVIPDAEQCFEIWVMND-NKCWAKHLTL---GPFFNFRIN-FGFWKN-DAFFIESNSR----IYG  219 (254)
Q Consensus       151 ~~~~~l~~~-~g~L~~~~~~~~~~~~IW~l~~-~~~W~~~~~i---~~~~~~~~~-~~~~~~-g~i~l~~~~~----~~~  219 (254)
                       .....+.+ +|+|.++++..... ++|+++- ...|+++-..   +... ..+- +.+..+ +.|++.-+..    ...
T Consensus       491 -~~h~~~~~~~~~iyv~GG~~~~~-~v~~yd~~t~~W~~~~~~g~~p~~r-~~~~a~v~~~~~~~iyv~GG~~~~~~~~~  567 (695)
T 2zwa_A          491 -FRHSACSLPDGNVLILGGVTEGP-AMLLYNVTEEIFKDVTPKDEFFQNS-LVSAGLEFDPVSKQGIILGGGFMDQTTVS  567 (695)
T ss_dssp             -BSCEEEECTTSCEEEECCBCSSC-SEEEEETTTTEEEECCCSSGGGGSC-CBSCEEEEETTTTEEEEECCBCTTSSCBC
T ss_pred             -ccceEEEEcCCEEEEECCCCCCC-CEEEEECCCCceEEccCCCCCCCcc-cceeEEEEeCCCCEEEEECCcCCCCCeee
Confidence             44555664 99999998532333 8888876 7889987652   2211 1122 222333 5676664320    013


Q ss_pred             CEEEEEECCCCc------EEEEEE
Q 039648          220 GCLFLHEHRTKE------IKNLQV  237 (254)
Q Consensus       220 ~~~~~yd~~t~~------~~~~~~  237 (254)
                      ..+..||+++++      |+.+.-
T Consensus       568 ~~v~~yd~~~~~w~~~~~W~~~~~  591 (695)
T 2zwa_A          568 DKAIIFKYDAENATEPITVIKKLQ  591 (695)
T ss_dssp             CEEEEEEECTTCSSCCEEEEEEEE
T ss_pred             CcEEEEEccCCccccceEEEEcCC
Confidence            568999999999      777744

>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A

Probab=96.30  E-value=0.024  Score=52.53  Aligned_cols=144  Identities=7%  Similarity=0.056  Sum_probs=87.7

Q ss_pred             cCeEEEEEcc--------CCceeeccccC----ceEEE--E-EEEEEEEecCC-------CceEEEEEECCCcceeEec-
Q 039648           89 VPNVQVYGFR--------TNSWREVHGHQ----LDRYF--K-VCYWLVIADTR-------DLKVILSFHMDNEVFEEIK-  145 (254)
Q Consensus        89 ~~~~~Vys~~--------~~~Wr~~~~~p----~~v~~--~-~lyWl~~~~~~-------~~~~IvsfD~~~e~~~~i~-  145 (254)
                      ..+++||...        ++.|+.+..+|    ....+  + .+|-+......       ....+..||+.+.+|+.++ 
T Consensus       157 i~E~~v~~~~~~~~~dp~~~~W~~~~~~P~~~~~~av~~~~g~l~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~  236 (656)
T 1k3i_A          157 IAEINVFQASSYTAPQPGLGRWGPTIDLPIVPAAAAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTV  236 (656)
T ss_dssp             ESEEEEEECSCCCCCCTTSCEEEEEEECSSCCSEEEEETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEE
T ss_pred             EEEEEEeeccccccCCCCCCeeeeeccCCCCceeEEEEecCCEEEEEecccccccccCCCCeEEEEEEeCCCCcEEeCcc
Confidence            3466677654        57899876665    33445  7 78877643211       1246899999999998763 


Q ss_pred             CCCCCC-ceeEEE-EeCCeEEEEecCCCCEEEEEEECC-CcceEEEEEecCCCcceeeEEEEeCCeEEEEeCcc---ccC
Q 039648          146 IPPHVN-YYSSIS-LYEDSLSIVIPDAEQCFEIWVMND-NKCWAKHLTLGPFFNFRINFGFWKNDAFFIESNSR---IYG  219 (254)
Q Consensus       146 ~P~~~~-~~~~l~-~~~g~L~~~~~~~~~~~~IW~l~~-~~~W~~~~~i~~~~~~~~~~~~~~~g~i~l~~~~~---~~~  219 (254)
                      +|.... .....+ ..+|+|.++......  ++|+++- ...|++.-.++..+ ...-..+..+|.|++.-...   ...
T Consensus       237 ~~~~~~~~~~~~~~~~~g~lyv~GG~~~~--~v~~yd~~t~~W~~~~~~~~~R-~~~s~~~~~dg~iyv~GG~~~~~~~~  313 (656)
T 1k3i_A          237 TVTKHDMFCPGISMDGNGQIVVTGGNDAK--KTSLYDSSSDSWIPGPDMQVAR-GYQSSATMSDGRVFTIGGSWSGGVFE  313 (656)
T ss_dssp             EECSCCCSSCEEEECTTSCEEEECSSSTT--CEEEEEGGGTEEEECCCCSSCC-SSCEEEECTTSCEEEECCCCCSSSCC
T ss_pred             cCCCCCCccccccCCCCCCEEEeCCCCCC--ceEEecCcCCceeECCCCCccc-cccceEEecCCeEEEEeCcccCCccc
Confidence            333222 222333 358999999853344  4566554 57899875544322 11223334477777765411   012


Q ss_pred             CEEEEEECCCCcEEEE
Q 039648          220 GCLFLHEHRTKEIKNL  235 (254)
Q Consensus       220 ~~~~~yd~~t~~~~~~  235 (254)
                      ..+..||+++++|+.+
T Consensus       314 ~~~e~yd~~t~~W~~~  329 (656)
T 1k3i_A          314 KNGEVYSPSSKTWTSL  329 (656)
T ss_dssp             CCEEEEETTTTEEEEE
T ss_pred             ccceEeCCCCCcceeC
Confidence            4688999999999986

>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}

Probab=84.46  E-value=15  Score=29.86  Aligned_cols=134  Identities=13%  Similarity=0.163  Sum_probs=71.0

Q ss_pred             eEEEEEccCCceeeccccC------ceEEEE-E--EEEEEEecCCCceEEEEEECCCcce-eEecCCCCCCceeEEEEe-
Q 039648           91 NVQVYGFRTNSWREVHGHQ------LDRYFK-V--CYWLVIADTRDLKVILSFHMDNEVF-EEIKIPPHVNYYSSISLY-  159 (254)
Q Consensus        91 ~~~Vys~~~~~Wr~~~~~p------~~v~~~-~--lyWl~~~~~~~~~~IvsfD~~~e~~-~~i~~P~~~~~~~~l~~~-  159 (254)
                      .+.|++..++.|..+....      ..+.++ .  -..+.....  ...|..+|+.+..- ..+.+......-..+.-. 
T Consensus        80 ~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~--d~~i~v~d~~~~~~~~~~~~~~~~~~v~~~~~~~  157 (379)
T 3jrp_A           80 KVLIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASS--DGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAP  157 (379)
T ss_dssp             CEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEET--TSEEEEEECCTTSCCCEEEEECCTTCEEEEEECC
T ss_pred             EEEEEEcCCCceeEeeeecCCCcceEEEEeCCCCCCCEEEEecC--CCcEEEEecCCCCceeeEEecCCCCceEEEEEcC
Confidence            6788998888776654331      222222 2  112222211  23678888876622 212111111111222222 


Q ss_pred             -------------CCeEEEEecCCCCEEEEEEECC-CcceEEEEEecCCCcceeeEEEEeC---CeEEEEeCccccCCEE
Q 039648          160 -------------EDSLSIVIPDAEQCFEIWVMND-NKCWAKHLTLGPFFNFRINFGFWKN---DAFFIESNSRIYGGCL  222 (254)
Q Consensus       160 -------------~g~L~~~~~~~~~~~~IW~l~~-~~~W~~~~~i~~~~~~~~~~~~~~~---g~i~l~~~~~~~~~~~  222 (254)
                                   ++.+.++.. ....+.||-++. ...|.....+..-.....-+.+..+   +.+++....   ++.+
T Consensus       158 ~~~~~~~~~~~~~~~~~l~~~~-~dg~i~i~d~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~---dg~i  233 (379)
T 3jrp_A          158 ATIEEDGEHNGTKESRKFVTGG-ADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQ---DRTC  233 (379)
T ss_dssp             CC----------CTTCEEEEEE-TTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEET---TSCE
T ss_pred             ccccccccccCCCCCCEEEEEe-CCCeEEEEEecCCCcceeeEEEEecccCcEeEEEECCCCCCCCeEEEEeC---CCEE
Confidence                         355555553 367899999986 5667776666532222233445556   666665542   6788


Q ss_pred             EEEECCCC
Q 039648          223 FLHEHRTK  230 (254)
Q Consensus       223 ~~yd~~t~  230 (254)
                      .+||++++
T Consensus       234 ~iwd~~~~  241 (379)
T 3jrp_A          234 IIWTQDNE  241 (379)
T ss_dssp             EEEEESST
T ss_pred             EEEeCCCC
Confidence            89998876

>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}

Probab=84.09  E-value=27  Score=32.45  Aligned_cols=180  Identities=11%  Similarity=0.095  Sum_probs=88.8

Q ss_pred             cEEEEcCcccccccCCCCCCCCCCCCCCCCcceEEEEeeCCCCCeEEEEEeeeeccccccCCCcCeEEEEEccCCceeec
Q 039648           26 RLTIWNPATREFRNLPNYKYCNSSNRLIPPSTFICLESDPINNDFKLLFVHNLWNEKRKRYGKVPNVQVYGFRTNSWREV  105 (254)
Q Consensus        26 ~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~g~g~d~~~~~yKVv~~~~~~~~~~~~~~~~~~~~Vys~~~~~Wr~~  105 (254)
                      .+.|||..++....+......        .....++.+.+..+.-.++....           .-.+.|++..++.|..+
T Consensus        32 ~I~vwd~~~~~~~~~~~l~~h--------~~~V~~l~~s~~~~~~~l~s~s~-----------Dg~I~vwd~~~~~~~~~   92 (753)
T 3jro_A           32 TIKIFEVEGETHKLIDTLTGH--------EGPVWRVDWAHPKFGTILASCSY-----------DGKVLIWKEENGRWSQI   92 (753)
T ss_dssp             EEEEEEEETTEEEEEEEECCC--------SSCEEEEEECCTTSCSEEEEEET-----------TSCEEEEEEETTEEEEE
T ss_pred             cEEEEecCCCCCccceeccCC--------cCceEEEEecCCCCCCEEEEEeC-----------CCeEEEEECCCCccccc
Confidence            479999874333322211111        12345666665532233333221           23678888888877655


Q ss_pred             cccC------ceEEEE-E--EEEEEEecCCCceEEEEEECCCccee-EecCCCCCCceeEEEEe--------------CC
Q 039648          106 HGHQ------LDRYFK-V--CYWLVIADTRDLKVILSFHMDNEVFE-EIKIPPHVNYYSSISLY--------------ED  161 (254)
Q Consensus       106 ~~~p------~~v~~~-~--lyWl~~~~~~~~~~IvsfD~~~e~~~-~i~~P~~~~~~~~l~~~--------------~g  161 (254)
                      ....      ..+.++ .  =..+....  ....|..+|+.+..-. ...+.........+.-.              +|
T Consensus        93 ~~~~~h~~~V~~v~~sp~~~~~~l~sgs--~dg~I~vwdl~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~~~~~~~~~d~  170 (753)
T 3jro_A           93 AVHAVHSASVNSVQWAPHEYGPLLLVAS--SDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKES  170 (753)
T ss_dssp             EEECCCSSCEEEEEECCGGGCSEEEEEE--TTSEEEEEECCSSSCCCCEEEECCSSCEEEEEECCCC---------CGGG
T ss_pred             ccccCCCCCeEEEEECCCCCCCEEEEEe--CCCcEEEEEeecCCCcceeEeecCCCceEEEEecCcccccccccccCCCC
Confidence            4331      222222 2  11222221  1236788888766211 11111111111222222              24


Q ss_pred             eEEEEecCCCCEEEEEEECC-CcceEEEEEecCCCcceeeEEEEeC---CeEEEEeCccccCCEEEEEECCCC
Q 039648          162 SLSIVIPDAEQCFEIWVMND-NKCWAKHLTLGPFFNFRINFGFWKN---DAFFIESNSRIYGGCLFLHEHRTK  230 (254)
Q Consensus       162 ~L~~~~~~~~~~~~IW~l~~-~~~W~~~~~i~~~~~~~~~~~~~~~---g~i~l~~~~~~~~~~~~~yd~~t~  230 (254)
                      .+.+++. ....+.||-++. ...+.....+..-.....-+.+..+   +..++....   ++.+.+||++++
T Consensus       171 ~~l~sgs-~dg~I~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~~~l~s~s~---Dg~I~iwd~~~~  239 (753)
T 3jro_A          171 RKFVTGG-ADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQ---DRTCIIWTQDNE  239 (753)
T ss_dssp             CCEEEEE-TTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEES---SSCEEEEEESSS
T ss_pred             CEEEEEE-CCCeEEEEeccCCcccceeeeeecCCCCcEEEEEeccCCCCCCEEEEEec---CCEEEEecCCCC
Confidence            4444442 367899999987 5566666665432212233444555   676666552   678899998875

>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A

Probab=83.76  E-value=19  Score=30.43  Aligned_cols=193  Identities=6%  Similarity=0.080  Sum_probs=89.7

Q ss_pred             ccCceEEEEEcCCccEEEEcCcccccccCCCCCCCCCCCCCCCCcceEEEEeeCCCCCeEEEEEeeeeccccccCCCcCe
Q 039648           12 YHDGLFCIMQSSTNRLTIWNPATREFRNLPNYKYCNSSNRLIPPSTFICLESDPINNDFKLLFVHNLWNEKRKRYGKVPN   91 (254)
Q Consensus        12 scnGLlcl~~~~~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~g~g~d~~~~~yKVv~~~~~~~~~~~~~~~~~~   91 (254)
                      |.+++|....+.  .++|||..|++...+-.....        ......+.|.|.. .|-++  ..          ..-.
T Consensus       114 S~~n~lAvgld~--tV~lWd~~tg~~~~~~~~~~~--------~~~V~sv~fspdg-~~las--gs----------~Dg~  170 (420)
T 4gga_A          114 SSGNVLAVALDN--SVYLWSASSGDILQLLQMEQP--------GEYISSVAWIKEG-NYLAV--GT----------SSAE  170 (420)
T ss_dssp             CTTSEEEEEETT--EEEEEETTTCCEEEEEECCST--------TCCEEEEEECTTS-SEEEE--EE----------TTSC
T ss_pred             CCCCEEEEEeCC--EEEEEECCCCCEEEEEEecCC--------CCcEEEEEECCCC-CEEEE--EE----------CCCe
Confidence            567777665544  369999999987765332111        1234556666643 33222  11          1236


Q ss_pred             EEEEEccCCce-eeccccC---ceEEEE-EEEEEEEecCCCceEEEEEECCCcceeEecCCCCCCceeEEEE-eCCeEEE
Q 039648           92 VQVYGFRTNSW-REVHGHQ---LDRYFK-VCYWLVIADTRDLKVILSFHMDNEVFEEIKIPPHVNYYSSISL-YEDSLSI  165 (254)
Q Consensus        92 ~~Vys~~~~~W-r~~~~~p---~~v~~~-~lyWl~~~~~~~~~~IvsfD~~~e~~~~i~~P~~~~~~~~l~~-~~g~L~~  165 (254)
                      +.|++..++.- +......   ..+..+ .+  +.....  ...+..+|..........+.........+.. -.|...+
T Consensus       171 v~iWd~~~~~~~~~~~~h~~~v~~~s~~~~~--l~sgs~--d~~i~~~d~~~~~~~~~~~~~h~~~~~~~~~~~~g~~l~  246 (420)
T 4gga_A          171 VQLWDVQQQKRLRNMTSHSARVGSLSWNSYI--LSSGSR--SGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDGRHLA  246 (420)
T ss_dssp             EEEEETTTTEEEEEECCCSSCEEEEEEETTE--EEEEET--TSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSSEEE
T ss_pred             EEEEEcCCCcEEEEEeCCCCceEEEeeCCCE--EEEEeC--CCceeEeeecccceeeEEecccccceeeeeecCCCCeee
Confidence            78888877542 2222111   233333 22  222211  1356677766554332222221111122222 2444443


Q ss_pred             EecCCCCEEEEEEECC-CcceEEEEEecCCCcceeeEEEEe-CCeEEEE-eCccccCCEEEEEECCCCcEEE
Q 039648          166 VIPDAEQCFEIWVMND-NKCWAKHLTLGPFFNFRINFGFWK-NDAFFIE-SNSRIYGGCLFLHEHRTKEIKN  234 (254)
Q Consensus       166 ~~~~~~~~~~IW~l~~-~~~W~~~~~i~~~~~~~~~~~~~~-~g~i~l~-~~~~~~~~~~~~yd~~t~~~~~  234 (254)
                      .. .....+.||-+.. ...+..+............+.+.. ++.++.. ...  .++.+.+||+++++...
T Consensus       247 s~-~~D~~v~i~~~~~~~~~~~~~~~~~~~~~~V~~~~~~p~~~~~la~~~gs--~D~~I~iwd~~t~~~~~  315 (420)
T 4gga_A          247 SG-GNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGT--SDRHIRIWNVCSGACLS  315 (420)
T ss_dssp             EE-ETTSCEEEEESSCCSSCSCCSEEECCCSSCEEEEEECTTCTTEEEEEECT--TTCEEEEEETTTTEEEE
T ss_pred             ee-eccccceEEeeccccccceeeeeecccCCceeeeeeCCCcccEEEEEeec--CCCEEEEEeCCccccce
Confidence            33 2367889998876 222222222221111112223332 2334333 221  25678888888876543

>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}

Probab=81.10  E-value=19  Score=28.73  Aligned_cols=98  Identities=10%  Similarity=0.159  Sum_probs=64.4

Q ss_pred             ceEEEEEECCCcce-eEecCCCCCCceeEEEEeCCeEEEEecCCCCEEEEEEECCCcceEEEEEecCCCcceeeEEEEeC
Q 039648          128 LKVILSFHMDNEVF-EEIKIPPHVNYYSSISLYEDSLSIVIPDAEQCFEIWVMNDNKCWAKHLTLGPFFNFRINFGFWKN  206 (254)
Q Consensus       128 ~~~IvsfD~~~e~~-~~i~~P~~~~~~~~l~~~~g~L~~~~~~~~~~~~IW~l~~~~~W~~~~~i~~~~~~~~~~~~~~~  206 (254)
                      ...|..+|+++.+- +.+++|... ....+...+++|.++.- ...  .+|+.+- ..-.++.+++...   .+.++..+
T Consensus        42 ~S~v~~vD~~tgkv~~~~~l~~~~-fgeGi~~~~~~ly~ltw-~~~--~v~v~D~-~tl~~~~ti~~~~---~Gwglt~d  113 (243)
T 3mbr_X           42 RSSVRKVDLETGRILQRAEVPPPY-FGAGIVAWRDRLIQLTW-RNH--EGFVYDL-ATLTPRARFRYPG---EGWALTSD  113 (243)
T ss_dssp             SCEEEEEETTTCCEEEEEECCTTC-CEEEEEEETTEEEEEES-SSS--EEEEEET-TTTEEEEEEECSS---CCCEEEEC
T ss_pred             CceEEEEECCCCCEEEEEeCCCCc-ceeEEEEeCCEEEEEEe-eCC--EEEEEEC-CcCcEEEEEeCCC---CceEEeeC
Confidence            35799999998755 667888754 34567778999998872 133  5566664 3445566666432   34566555


Q ss_pred             Ce-EEEEeCccccCCEEEEEECCCCcE-EEEEE
Q 039648          207 DA-FFIESNSRIYGGCLFLHEHRTKEI-KNLQV  237 (254)
Q Consensus       207 g~-i~l~~~~~~~~~~~~~yd~~t~~~-~~~~~  237 (254)
                      +. +++...    +..+..+|++|.+. +.+.+
T Consensus       114 g~~L~vSdg----s~~l~~iDp~t~~~~~~I~V  142 (243)
T 3mbr_X          114 DSHLYMSDG----TAVIRKLDPDTLQQVGSIKV  142 (243)
T ss_dssp             SSCEEEECS----SSEEEEECTTTCCEEEEEEC
T ss_pred             CCEEEEECC----CCeEEEEeCCCCeEEEEEEE
Confidence            55 666654    78899999998654 44554

>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*

Probab=80.93  E-value=25  Score=29.86  Aligned_cols=189  Identities=10%  Similarity=0.101  Sum_probs=85.5

Q ss_pred             Cc-eEEEEEcCCccEEEEcCcccccccCCCCCCCCCCCCCCCCcceEEEEeeCCCCCeEEEEEeeeeccccccCCCcCeE
Q 039648           14 DG-LFCIMQSSTNRLTIWNPATREFRNLPNYKYCNSSNRLIPPSTFICLESDPINNDFKLLFVHNLWNEKRKRYGKVPNV   92 (254)
Q Consensus        14 nG-Llcl~~~~~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~g~g~d~~~~~yKVv~~~~~~~~~~~~~~~~~~~   92 (254)
                      ++ +|+.....+ .+.|||..+++...+-.....        .....++.|.|..+.+ ++...           ..-.+
T Consensus       131 ~~~~lasGs~dg-~i~lWd~~~~~~~~~~~~~gH--------~~~V~~l~f~p~~~~~-l~s~s-----------~D~~v  189 (435)
T 4e54_B          131 HPSTVAVGSKGG-DIMLWNFGIKDKPTFIKGIGA--------GGSITGLKFNPLNTNQ-FYASS-----------MEGTT  189 (435)
T ss_dssp             CTTCEEEEETTS-CEEEECSSCCSCCEEECCCSS--------SCCCCEEEECSSCTTE-EEEEC-----------SSSCE
T ss_pred             CCCEEEEEeCCC-EEEEEECCCCCceeEEEccCC--------CCCEEEEEEeCCCCCE-EEEEe-----------CCCEE
Confidence            44 343333333 479999998875433221111        1123455666654443 22221           12256


Q ss_pred             EEEEccCCceeecccc---C---ceEEEE-EEEEEEEecCCCceEEEEEECCCcceeEecCCCCCCceeEEEEe-CC-eE
Q 039648           93 QVYGFRTNSWREVHGH---Q---LDRYFK-VCYWLVIADTRDLKVILSFHMDNEVFEEIKIPPHVNYYSSISLY-ED-SL  163 (254)
Q Consensus        93 ~Vys~~~~~Wr~~~~~---p---~~v~~~-~lyWl~~~~~~~~~~IvsfD~~~e~~~~i~~P~~~~~~~~l~~~-~g-~L  163 (254)
                      .|++++++.-+.....   .   ..+.++ .-..+.....  ...|..+|++.+....+..-..  .-..+.-. .+ .+
T Consensus       190 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~--dg~i~~wd~~~~~~~~~~~h~~--~v~~v~~~p~~~~~  265 (435)
T 4e54_B          190 RLQDFKGNILRVFASSDTINIWFCSLDVSASSRMVVTGDN--VGNVILLNMDGKELWNLRMHKK--KVTHVALNPCCDWF  265 (435)
T ss_dssp             EEEETTSCEEEEEECCSSCSCCCCCEEEETTTTEEEEECS--SSBEEEEESSSCBCCCSBCCSS--CEEEEEECTTCSSE
T ss_pred             EEeeccCCceeEEeccCCCCccEEEEEECCCCCEEEEEeC--CCcEeeeccCcceeEEEecccc--eEEeeeecCCCceE
Confidence            7788777654443222   1   233333 1112222221  1257778887664443322111  11222222 23 34


Q ss_pred             EEEecCCCCEEEEEEECC-CcceEEEEEecCCCcceeeEEEEeCCeEEEEeCccccCCEEEEEECCCCcE
Q 039648          164 SIVIPDAEQCFEIWVMND-NKCWAKHLTLGPFFNFRINFGFWKNDAFFIESNSRIYGGCLFLHEHRTKEI  232 (254)
Q Consensus       164 ~~~~~~~~~~~~IW~l~~-~~~W~~~~~i~~~~~~~~~~~~~~~g~i~l~~~~~~~~~~~~~yd~~t~~~  232 (254)
                      .+.+ .....+.||-++. ...=.......... -..-+.+..+|..++....   ++.+.+||.++...
T Consensus       266 ~~s~-s~d~~v~iwd~~~~~~~~~~~~~~~h~~-~v~~~~~spdg~~l~s~~~---D~~i~iwd~~~~~~  330 (435)
T 4e54_B          266 LATA-SVDQTVKIWDLRQVRGKASFLYSLPHRH-PVNAACFSPDGARLLTTDQ---KSEIRVYSASQWDC  330 (435)
T ss_dssp             EEEE-ETTSBCCEEETTTCCSSSCCSBCCBCSS-CEEECCBCTTSSEEEEEES---SSCEEEEESSSSSS
T ss_pred             EEEe-cCcceeeEEecccccccceEEEeeeccc-cccceeECCCCCeeEEEcC---CCEEEEEECCCCcc
Confidence            4333 3467889998876 11000000001101 1112233456766655442   67888999887643

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	254
d1zgka1	288	Kelch-like ECH-associated protein 1, KEAP1 {Human	98.12
d1zgka1	288	Kelch-like ECH-associated protein 1, KEAP1 {Human	98.11
d1k3ia3	387	Galactose oxidase, central domain {Fungi (Fusarium	96.63
d1k3ia3	387	Galactose oxidase, central domain {Fungi (Fusarium	96.11
d1qfma1	430	Prolyl oligopeptidase, N-terminal domain {Pig (Sus	84.74

>d1zgka1 b.68.11.1 (A:322-609) Kelch-like ECH-associated protein 1, KEAP1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Kelch motif
family: Kelch motif
domain: Kelch-like ECH-associated protein 1, KEAP1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.12  E-value=6.6e-05  Score=59.82  Aligned_cols=195  Identities=9%  Similarity=-0.007  Sum_probs=114.5

Q ss_pred             cEEEEcCcccccccCCCCCCCCCCCCCCCCcceEEEEeeCCCCCeEEEEEeeeeccccccCCCcCeEEEEEccCCceeec
Q 039648           26 RLTIWNPATREFRNLPNYKYCNSSNRLIPPSTFICLESDPINNDFKLLFVHNLWNEKRKRYGKVPNVQVYGFRTNSWREV  105 (254)
Q Consensus        26 ~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~g~g~d~~~~~yKVv~~~~~~~~~~~~~~~~~~~~Vys~~~~~Wr~~  105 (254)
                      .+.++||.|++|.++|+.|..+       ..+... .++     =|++.+...... .........+++|+..++.|+.+
T Consensus        20 ~~~~yd~~t~~W~~~~~~p~~R-------~~~~~~-~~~-----~~iyv~GG~~~~-~~~~~~~~~~~~yd~~~~~w~~~   85 (288)
T d1zgka1          20 YLEAYNPSNGTWLRLADLQVPR-------SGLAGC-VVG-----GLLYAVGGRNNS-PDGNTDSSALDCYNPMTNQWSPC   85 (288)
T ss_dssp             CEEEEETTTTEEEECCCCSSCC-------BSCEEE-EET-----TEEEEECCEEEE-TTEEEECCCEEEEETTTTEEEEC
T ss_pred             eEEEEECCCCeEEECCCCCCcc-------ceeEEE-EEC-----CEEEEEeCcccC-CCCccccchhhhccccccccccc
Confidence            4689999999999998776531       111111 121     256666442111 01112345789999999999999


Q ss_pred             cccC------ceEEEE-EEEEEEEecC-CCceEEEEEECCCcceeEecCCCCCCceeEEEEeCCeEEEEec--CCCCEEE
Q 039648          106 HGHQ------LDRYFK-VCYWLVIADT-RDLKVILSFHMDNEVFEEIKIPPHVNYYSSISLYEDSLSIVIP--DAEQCFE  175 (254)
Q Consensus       106 ~~~p------~~v~~~-~lyWl~~~~~-~~~~~IvsfD~~~e~~~~i~~P~~~~~~~~l~~~~g~L~~~~~--~~~~~~~  175 (254)
                      ..+|      ..+.++ .+|.+..... ........+|..+++|...+.+............++.+.++..  .....-+
T Consensus        86 ~~~p~~r~~~~~~~~~~~i~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~GG~~~~~~~~~  165 (288)
T d1zgka1          86 APMSVPRNRIGVGVIDGHIYAVGGSHGCIHHNSVERYEPERDEWHLVAPMLTRRIGVGVAVLNRLLYAVGGFDGTNRLNS  165 (288)
T ss_dssp             CCCSSCCBTCEEEEETTEEEEECCEETTEECCCEEEEETTTTEEEECCCCSSCCBSCEEEEETTEEEEECCBCSSCBCCC
T ss_pred             ccccceecceeccccceeeEEecceecccccceeeeeccccCccccccccccccccceeeeeeecceEecCcccccccce
Confidence            8774      345667 8887643321 1124577899999999887544332244556778888888873  2222334


Q ss_pred             EEEECC-CcceEEEEEecCCCcceeeEEEEeCCeEEEEeCcc--ccCCEEEEEECCCCcEEEEE
Q 039648          176 IWVMND-NKCWAKHLTLGPFFNFRINFGFWKNDAFFIESNSR--IYGGCLFLHEHRTKEIKNLQ  236 (254)
Q Consensus       176 IW~l~~-~~~W~~~~~i~~~~~~~~~~~~~~~g~i~l~~~~~--~~~~~~~~yd~~t~~~~~~~  236 (254)
                      ++.++. ...|......+...  ...-....++.|++.-...  ........||..+++|..+.
T Consensus       166 ~~~~d~~~~~~~~~~~~~~~~--~~~~~~~~~~~i~i~GG~~~~~~~~~~~~~~~~~~~~~~~~  227 (288)
T d1zgka1         166 AECYYPERNEWRMITAMNTIR--SGAGVCVLHNCIYAAGGYDGQDQLNSVERYDVETETWTFVA  227 (288)
T ss_dssp             EEEEETTTTEEEECCCCSSCC--BSCEEEEETTEEEEECCBCSSSBCCCEEEEETTTTEEEECC
T ss_pred             EEEeecccccccccccccccc--ccccccceeeeEEEecCccccccccceeeeeecceeeeccc
Confidence            555554 56777653332211  1222223355555543211  11346789999999999874

>d1zgka1 b.68.11.1 (A:322-609) Kelch-like ECH-associated protein 1, KEAP1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Kelch motif
family: Kelch motif
domain: Kelch-like ECH-associated protein 1, KEAP1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.11  E-value=0.00027  Score=56.07  Aligned_cols=193  Identities=9%  Similarity=0.035  Sum_probs=115.5

Q ss_pred             ccEEEEcCcccccccCCCCCCCCCCCCCCCCcceEEEEeeCCCCCeEEEEEeeeeccccccCCCcCeEEEEEccCCceee
Q 039648           25 NRLTIWNPATREFRNLPNYKYCNSSNRLIPPSTFICLESDPINNDFKLLFVHNLWNEKRKRYGKVPNVQVYGFRTNSWRE  104 (254)
Q Consensus        25 ~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~g~g~d~~~~~yKVv~~~~~~~~~~~~~~~~~~~~Vys~~~~~Wr~  104 (254)
                      .++.++||.|.+|..+|+.+..+       ..+ ....++     =|++.+.....     ......+++|+..++.|..
T Consensus        70 ~~~~~yd~~~~~w~~~~~~p~~r-------~~~-~~~~~~-----~~i~~~gg~~~-----~~~~~~~~~~~~~~~~~~~  131 (288)
T d1zgka1          70 SALDCYNPMTNQWSPCAPMSVPR-------NRI-GVGVID-----GHIYAVGGSHG-----CIHHNSVERYEPERDEWHL  131 (288)
T ss_dssp             CCEEEEETTTTEEEECCCCSSCC-------BTC-EEEEET-----TEEEEECCEET-----TEECCCEEEEETTTTEEEE
T ss_pred             chhhhccccccccccccccccee-------cce-eccccc-----eeeEEecceec-----ccccceeeeeccccCcccc
Confidence            35799999999999999876431       111 112222     24555443211     2234567899999999998


Q ss_pred             ccccC------ceEEEE-EEEEEEEecC-CCceEEEEEECCCcceeEecCCCCCCceeEEEEeCCeEEEEec--CCCCEE
Q 039648          105 VHGHQ------LDRYFK-VCYWLVIADT-RDLKVILSFHMDNEVFEEIKIPPHVNYYSSISLYEDSLSIVIP--DAEQCF  174 (254)
Q Consensus       105 ~~~~p------~~v~~~-~lyWl~~~~~-~~~~~IvsfD~~~e~~~~i~~P~~~~~~~~l~~~~g~L~~~~~--~~~~~~  174 (254)
                      ....+      ..+..+ .+|-+..... .....+..||+.+++|...+.+............++.|.+...  .....-
T Consensus       132 ~~~~~~~r~~~~~~~~~~~~~~~GG~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~GG~~~~~~~~  211 (288)
T d1zgka1         132 VAPMLTRRIGVGVAVLNRLLYAVGGFDGTNRLNSAECYYPERNEWRMITAMNTIRSGAGVCVLHNCIYAAGGYDGQDQLN  211 (288)
T ss_dssp             CCCCSSCCBSCEEEEETTEEEEECCBCSSCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEETTEEEEECCBCSSSBCC
T ss_pred             ccccccccccceeeeeeecceEecCcccccccceEEEeeccccccccccccccccccccccceeeeEEEecCcccccccc
Confidence            77663      234444 6654432211 1234688999999999988654433244566788899888873  223334


Q ss_pred             EEEEECC-CcceEEEEEecCCCcceeeEEEEeCCeEEEEeCc--cccCCEEEEEECCCCcEEEEEE
Q 039648          175 EIWVMND-NKCWAKHLTLGPFFNFRINFGFWKNDAFFIESNS--RIYGGCLFLHEHRTKEIKNLQV  237 (254)
Q Consensus       175 ~IW~l~~-~~~W~~~~~i~~~~~~~~~~~~~~~g~i~l~~~~--~~~~~~~~~yd~~t~~~~~~~~  237 (254)
                      ..|..+. ...|+.+..++... ...-+. .-+++|++.-..  ......+..||+++++|+.+..
T Consensus       212 ~~~~~~~~~~~~~~~~~~p~~r-~~~~~~-~~~~~l~v~GG~~~~~~~~~v~~yd~~~~~W~~~~~  275 (288)
T d1zgka1         212 SVERYDVETETWTFVAPMKHRR-SALGIT-VHQGRIYVLGGYDGHTFLDSVECYDPDTDTWSEVTR  275 (288)
T ss_dssp             CEEEEETTTTEEEECCCCSSCC-BSCEEE-EETTEEEEECCBCSSCBCCEEEEEETTTTEEEEEEE
T ss_pred             ceeeeeecceeeecccCccCcc-cceEEE-EECCEEEEEecCCCCeecceEEEEECCCCEEEECCC
Confidence            5566554 57787754333222 212222 336777775321  0113458999999999999854

>d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Galactose oxidase, central domain
family: Galactose oxidase, central domain
domain: Galactose oxidase, central domain
species: Fungi (Fusarium sp.) [TaxId: 29916]

Probab=96.63  E-value=0.0068  Score=49.62  Aligned_cols=204  Identities=7%  Similarity=0.043  Sum_probs=106.0

Q ss_pred             cCceEEEEEc-CCccEEEEcCcccccccCCCCCCCCCCCCCCCCcceEEEEeeCCCCCeEEEEEeeeeccccccCCCcCe
Q 039648           13 HDGLFCIMQS-STNRLTIWNPATREFRNLPNYKYCNSSNRLIPPSTFICLESDPINNDFKLLFVHNLWNEKRKRYGKVPN   91 (254)
Q Consensus        13 cnGLlcl~~~-~~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~g~g~d~~~~~yKVv~~~~~~~~~~~~~~~~~~   91 (254)
                      .+|.+.+... ......++||.|++|..+|..+..+       ..+....-.|   +  ||+.+.....    .......
T Consensus        85 ~~g~i~v~Gg~~~~~~~~yd~~~~~w~~~~~~~~~r-------~~~~~~~~~d---G--~v~v~GG~~~----~~~~~~~  148 (387)
T d1k3ia3          85 GNGQIVVTGGNDAKKTSLYDSSSDSWIPGPDMQVAR-------GYQSSATMSD---G--RVFTIGGSWS----GGVFEKN  148 (387)
T ss_dssp             TTSCEEEECSSSTTCEEEEEGGGTEEEECCCCSSCC-------SSCEEEECTT---S--CEEEECCCCC----SSSCCCC
T ss_pred             cCCcEEEeecCCCcceeEecCccCcccccccccccc-------cccceeeecC---C--ceeeeccccc----cccccce
Confidence            4676655442 2234689999999999999876532       1222222112   1  3555433211    1234457


Q ss_pred             EEEEEccCCceeeccccC---------ce---------EEE--E-EEEEEEEecCCCceEEEEEECCCcceeEec-CCCC
Q 039648           92 VQVYGFRTNSWREVHGHQ---------LD---------RYF--K-VCYWLVIADTRDLKVILSFHMDNEVFEEIK-IPPH  149 (254)
Q Consensus        92 ~~Vys~~~~~Wr~~~~~p---------~~---------v~~--~-~lyWl~~~~~~~~~~IvsfD~~~e~~~~i~-~P~~  149 (254)
                      +++|+..+++|..+...+         ..         ++.  + .++...    .....+..+|..+..|.... .|..
T Consensus       149 v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~g----~~~~~~~~~~~~~~~~~~~~~~~~~  224 (387)
T d1k3ia3         149 GEVYSPSSKTWTSLPNAKVNPMLTADKQGLYRSDNHAWLFGWKKGSVFQAG----PSTAMNWYYTSGSGDVKSAGKRQSN  224 (387)
T ss_dssp             EEEEETTTTEEEEETTSCSGGGCCCCTTGGGTTTCSCCEEECGGGCEEECC----SSSEEEEEECSTTCEEEEEEECEET
T ss_pred             eeeecCCCCceeecCCCcccccccccccceeeccceeEEEEeCCCCEEEec----CcCCcEEecCcccCcEeeccccccC
Confidence            899999999999876541         01         111  1 222211    12246777888888887652 2211


Q ss_pred             CC-------c-eeEEEEeCCeEEEEecC-------CCCEEEEEEECC-CcceEEEEEecCCC--cceeeEEEEeCCeEEE
Q 039648          150 VN-------Y-YSSISLYEDSLSIVIPD-------AEQCFEIWVMND-NKCWAKHLTLGPFF--NFRINFGFWKNDAFFI  211 (254)
Q Consensus       150 ~~-------~-~~~l~~~~g~L~~~~~~-------~~~~~~IW~l~~-~~~W~~~~~i~~~~--~~~~~~~~~~~g~i~l  211 (254)
                      ..       . ...+...+|++.++...       ......+..+.. ...|.....+..+.  .......+..+|+|++
T Consensus       225 ~~~~~~~~~~~~~~~~~~~g~v~v~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~~dg~i~v  304 (387)
T d1k3ia3         225 RGVAPDAMCGNAVMYDAVKGKILTFGGSPDYQDSDATTNAHIITLGEPGTSPNTVFASNGLYFARTFHTSVVLPDGSTFI  304 (387)
T ss_dssp             TEECCCCBTCEEEEEETTTTEEEEECCBSSSSSSBCCCCEEEEECCSTTSCCEEEECTTCCSSCCBSCEEEECTTSCEEE
T ss_pred             cccCcccccccEEEeeccCCceEEEEeccCCCCCcccceeecccccccccCCCceeeccccccccccceeeeccCCeEEE
Confidence            11       1 12233347888777731       122344444444 22332222333222  1223334445777776


Q ss_pred             EeCcc--------ccCCEEEEEECCCCcEEEEE
Q 039648          212 ESNSR--------IYGGCLFLHEHRTKEIKNLQ  236 (254)
Q Consensus       212 ~~~~~--------~~~~~~~~yd~~t~~~~~~~  236 (254)
                      .-...        .....+-.||+++++|+.+.
T Consensus       305 ~GG~~~~~~~~~~~~~~~ve~Ydp~~~~W~~~~  337 (387)
T d1k3ia3         305 TGGQRRGIPFEDSTPVFTPEIYVPEQDTFYKQN  337 (387)
T ss_dssp             ECCBSBCCTTCCCSBCCCCEEEEGGGTEEEECC
T ss_pred             ECCcccCccCCCCcEeceEEEEECCCCeEEECC
Confidence            53310        00123568999999999773

>d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Galactose oxidase, central domain
family: Galactose oxidase, central domain
domain: Galactose oxidase, central domain
species: Fungi (Fusarium sp.) [TaxId: 29916]

Probab=96.11  E-value=0.021  Score=46.46  Aligned_cols=186  Identities=10%  Similarity=0.047  Sum_probs=102.6

Q ss_pred             cCcccccccCCCCCCCCCCCCCCCCcceEEEEeeCCCCCeEEEEEeeeeccccc-cCCCcCeEEEEEccCCceeecccc-
Q 039648           31 NPATREFRNLPNYKYCNSSNRLIPPSTFICLESDPINNDFKLLFVHNLWNEKRK-RYGKVPNVQVYGFRTNSWREVHGH-  108 (254)
Q Consensus        31 NP~T~~~~~LP~~~~~~~~~~~~~~~~~~g~g~d~~~~~yKVv~~~~~~~~~~~-~~~~~~~~~Vys~~~~~Wr~~~~~-  108 (254)
                      .|++++|..+++.|...        .+.   +..+..+  ||+.+......... .......+++|+..+++|+....+ 
T Consensus         5 ~p~~g~W~~~~~~p~~~--------~~~---a~~~~~g--kv~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~   71 (387)
T d1k3ia3           5 QPGLGRWGPTIDLPIVP--------AAA---AIEPTSG--RVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTV   71 (387)
T ss_dssp             CTTSCEEEEEEECSSCC--------SEE---EEETTTT--EEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEE
T ss_pred             CCCCCccCCcCCCCccc--------cEE---EEEeeCC--EEEEEEeecCcccCCCCCceeEEEEEECCCCcEeecCCCC
Confidence            58899998776654421        111   2223333  67776542111100 112233578999999999886544 


Q ss_pred             -C-----ce-EEE-E-EEEEEEEecCCCceEEEEEECCCcceeEecCCCCCCceeEEEEe-CCeEEEEecC-----CCCE
Q 039648          109 -Q-----LD-RYF-K-VCYWLVIADTRDLKVILSFHMDNEVFEEIKIPPHVNYYSSISLY-EDSLSIVIPD-----AEQC  173 (254)
Q Consensus       109 -p-----~~-v~~-~-~lyWl~~~~~~~~~~IvsfD~~~e~~~~i~~P~~~~~~~~l~~~-~g~L~~~~~~-----~~~~  173 (254)
                       +     .+ +.+ + .++.....+   ...+-.||..+++|..++..+........+.+ +|++.++...     ....
T Consensus        72 ~~~~~~~~~~~~~~~g~i~v~Gg~~---~~~~~~yd~~~~~w~~~~~~~~~r~~~~~~~~~dG~v~v~GG~~~~~~~~~~  148 (387)
T d1k3ia3          72 TKHDMFCPGISMDGNGQIVVTGGND---AKKTSLYDSSSDSWIPGPDMQVARGYQSSATMSDGRVFTIGGSWSGGVFEKN  148 (387)
T ss_dssp             CSCCCSSCEEEECTTSCEEEECSSS---TTCEEEEEGGGTEEEECCCCSSCCSSCEEEECTTSCEEEECCCCCSSSCCCC
T ss_pred             CCcccceeEEEEecCCcEEEeecCC---CcceeEecCccCcccccccccccccccceeeecCCceeeeccccccccccce
Confidence             2     12 222 3 666654222   23577899999999987432222123344444 7898888731     1234


Q ss_pred             EEEEEECCCcceEEEEEecCCCc-------c----eeeEE-EEeCCeEEEEeCccccCCEEEEEECCCCcEEEEE
Q 039648          174 FEIWVMNDNKCWAKHLTLGPFFN-------F----RINFG-FWKNDAFFIESNSRIYGGCLFLHEHRTKEIKNLQ  236 (254)
Q Consensus       174 ~~IW~l~~~~~W~~~~~i~~~~~-------~----~~~~~-~~~~g~i~l~~~~~~~~~~~~~yd~~t~~~~~~~  236 (254)
                      +++|-.. ..+|+.+-.+.....       .    ..+.. ...+|+++.....   ......||..+..|+...
T Consensus       149 v~~yd~~-~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~g~~---~~~~~~~~~~~~~~~~~~  219 (387)
T d1k3ia3         149 GEVYSPS-SKTWTSLPNAKVNPMLTADKQGLYRSDNHAWLFGWKKGSVFQAGPS---TAMNWYYTSGSGDVKSAG  219 (387)
T ss_dssp             EEEEETT-TTEEEEETTSCSGGGCCCCTTGGGTTTCSCCEEECGGGCEEECCSS---SEEEEEECSTTCEEEEEE
T ss_pred             eeeecCC-CCceeecCCCcccccccccccceeeccceeEEEEeCCCCEEEecCc---CCcEEecCcccCcEeecc
Confidence            5555544 588987644331110       0    12222 2346666655442   456788999999887664

>d1qfma1 b.69.7.1 (A:1-430) Prolyl oligopeptidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Peptidase/esterase 'gauge' domain
family: Prolyl oligopeptidase, N-terminal domain
domain: Prolyl oligopeptidase, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=84.74  E-value=8.5  Score=31.08  Aligned_cols=114  Identities=8%  Similarity=0.094  Sum_probs=61.5

Q ss_pred             EEEEEEEecCCCceEEEEEECCC---cceeEecCCCCCCce-eEEEEeCCeEEEEe-cCCCCEEEEEEECCCcceEEEEE
Q 039648          116 VCYWLVIADTRDLKVILSFHMDN---EVFEEIKIPPHVNYY-SSISLYEDSLSIVI-PDAEQCFEIWVMNDNKCWAKHLT  190 (254)
Q Consensus       116 ~lyWl~~~~~~~~~~IvsfD~~~---e~~~~i~~P~~~~~~-~~l~~~~g~L~~~~-~~~~~~~~IW~l~~~~~W~~~~~  190 (254)
                      .+|.+ .+.......|++.|+++   ..|+.+-.|...... ..+...++.|.+.. ......+.|+.++. +.|..+. 
T Consensus       299 ~~~~~-Tn~~a~~~~L~~~~~~~~~~~~w~~vi~~~~~~~~~~~~~~~~~~lvl~~~~~~~~~l~v~~~~~-~~~~~~~-  375 (430)
T d1qfma1         299 VFTFK-TNRHSPNYRLINIDFTDPEESKWKVLVPEHEKDVLEWVACVRSNFLVLCYLHDVKNTLQLHDLAT-GALLKIF-  375 (430)
T ss_dssp             EEEEE-ECTTCTTCEEEEEETTBCCGGGCEEEECCCSSCEEEEEEEETTTEEEEEEEETTEEEEEEEETTT-CCEEEEE-
T ss_pred             eeecc-cCcccccceeEEecCCCCccccceEEecccCcceeeeEEEEECCEEEEEEEcCCEeEEEEEECCC-CcEEEec-
Confidence            34433 33333457899999885   346654322222122 23334467777665 33445566666654 6676652 


Q ss_pred             ecCCCcceeeEEE-EeCCeEEEEeCccccCCEEEEEECCCCcEE
Q 039648          191 LGPFFNFRINFGF-WKNDAFFIESNSRIYGGCLFLHEHRTKEIK  233 (254)
Q Consensus       191 i~~~~~~~~~~~~-~~~g~i~l~~~~~~~~~~~~~yd~~t~~~~  233 (254)
                       ++.......+.. ..++++++....+.....++.||++|++++
T Consensus       376 -~~~~~sv~~~~~~~~~~~~~~~~ss~~tP~~~y~~Dl~t~~~~  418 (430)
T d1qfma1         376 -PLEVGSVVGYSGQKKDTEIFYQFTSFLSPGIIYHCDLTKEELE  418 (430)
T ss_dssp             -CCCSSEEEEEECCTTCSEEEEEEECSSCCCEEEEEETTSSSCC
T ss_pred             -CCCCceEeeccCCCCCCEEEEEEcCCCCCCeEEEEECCCCCcc
Confidence             221111122221 234467776554445788999999998653