Citrus Sinensis ID: 039652

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-----
MRLYDPNREALEALRGSNIEVTLGLPNDDLRRIASNQAEANTWVQNNVRNFANNVKFKYIAVGNDAKPGDNFAQYLVPAMRNIQSAVNGAGLGNQIKVSTAIETGALGESFPPSRGSFKQDYRPILDPLIRFLNENRSPLLVNLYPYFAIADNRQISLDYALFRKPAGVAGHRDIGERVADGWWGRALTNVDNARTYNNNLIQHVKRRSPKKPGRPIETYIFAMFDENGKKGPETERHWGLFAPNRQPRYQINFN
cccccccHHHHHHHHccccEEEEEcccccHHHHHHcHHHHHHHHHHHcccccccccEEEEEEccccccccccHHHHHHHHHHHHHHHHHcccccccEEEccccccccccccccccccccccccHHHHHHHHHHHHccccccccccccccccccccccccEEEEEccccccccccccEEEEccccccccccHHHHHHHHHHHHHccccccccccccccEEEEEEEccccccccccccccEEcccccccEEEEcccc
EEEccccHHHHHHccccccEEEEEccHHHHHHHHHcHHHHHHHHHHHccccccccEEEEEEEEEcccHHcHHHHHHHHHHHHHHHHHHHcccccccEEEEEEEHHHEEccccHHHcEEcccHHHHHHHHHHHHHHHcccEEEEccHHHHHHccccccccEEEEcccccccccccHHHHHcccccccccccHHHHHHHHHHHHHHHcccccccEcccccEEEEccEccccccccHHHHccccEcccccEccccccc
MRLYDPNREALEALRGsnievtlglpnddlRRIASNQAEANTWVQNNVRNFANNVKFKYIavgndakpgdnfaQYLVPAMRNIQSAvngaglgnqIKVSTAietgalgesfppsrgsfkqdyrpiLDPLIRFlnenrspllvnlypyfaiadnrqISLDYAlfrkpagvaghrdigervadgwwgraltnvdnarTYNNNLIQHvkrrspkkpgrpiETYIFAMFdengkkgpeterhwglfapnrqpryqinfn
MRLYDPNREALEalrgsnievtlglPNDDLRRIASNQAEANTWVQNNVRNFANNVKFKYIAVGNDAKPGDNFAQYLVPAMRNIQSAVNGAGLGNQIKVSTAIETGAlgesfppsrgsfkQDYRPILDPLIRFLNENRSPLLVNLYPYFAIADNRQISLDYALFRKPAGVAGHRDIGERVADGWWGRALtnvdnartynnnliqhvkrrspkkpgrpIETYIFAMFDENGKKGPETERhwglfapnrqpryqinfn
MRLYDPNREALEALRGSNIEVTLGLPNDDLRRIASNQAEANTWVQNNVRNFANNVKFKYIAVGNDAKPGDNFAQYLVPAMRNIQSAVNGAGLGNQIKVSTAIETGALGESFPPSRGSFKQDYRPILDPLIRFLNENRSPLLVNLYPYFAIADNRQISLDYALFRKPAGVAGHRDIGERVADGWWGRALTNVDNARTYNNNLIQHVKRRSPKKPGRPIETYIFAMFDENGKKGPETERHWGLFAPNRQPRYQINFN
******************IEVTLGLPNDDLRRIASNQAEANTWVQNNVRNFANNVKFKYIAVGNDAKPGDNFAQYLVPAMRNIQSAVNGAGLGNQIKVSTAIETGAL**********FKQDYRPILDPLIRFLNENRSPLLVNLYPYFAIADNRQISLDYALFRKPAGVAGHRDIGERVADGWWGRALTNVDNARTYNNNLIQHV***********IETYIFAMFD************WGLF*************
MRLYDPNREALEALRGSNIEVTLGLPNDDLRRIASNQAEANTWVQNNVRNFANNVKFKYIAVGNDAKPGDNFAQYLVPAMRNIQSAVNGAGLGNQIKVSTAIETGALGESFPPSRGSFKQDYRPILDPLIRFLNENRSPLLVNLYPYFAIADNRQISLDYALFRKPAGVAGHRDIGERVADGWWGRALTNVDNARTYNNNLIQHVKRRSPKKPGRPIETYIFAMFDENGKKGPETERHWGLFAPNRQPRYQINFN
MRLYDPNREALEALRGSNIEVTLGLPNDDLRRIASNQAEANTWVQNNVRNFANNVKFKYIAVGNDAKPGDNFAQYLVPAMRNIQSAVNGAGLGNQIKVSTAIETGALGESFPPSRGSFKQDYRPILDPLIRFLNENRSPLLVNLYPYFAIADNRQISLDYALFRKPAGVAGHRDIGERVADGWWGRALTNVDNARTYNNNLIQHVKRRSPKKPGRPIETYIFAMFDENGKKGPETERHWGLFAPNRQPRYQINFN
MRLYDPNREALEALRGSNIEVTLGLPNDDLRRIASNQAEANTWVQNNVRNFANNVKFKYIAVGNDAKPGDNFAQYLVPAMRNIQSAVNGAGLGNQIKVSTAIETGALGESFPPSRGSFKQDYRPILDPLIRFLNENRSPLLVNLYPYFAIADNRQISLDYALFRKPAGVAGHRDIGERVADGWWGRALTNVDNARTYNNNLIQHVKRRSPKKPGRPIETYIFAMFDENGKKGPETERHWGLFAPNRQPRYQINFN
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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iiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MRLYDPNREALEALRGSNIEVTLGLPNDDLRRIASNQAEANTWVQNNVRNFANNVKFKYIAVGNDAKPGDNFAQYLVPAMRNIQSAVNGAGLGNQIKVSTAIETGALGESFPPSRGSFKQDYRPILDPLIRFLNENRSPLLVNLYPYFAIADNRQISLDYALFRKPAGVAGHRDIGERVADGWWGRALTNVDNARTYNNNLIQHVKRRSPKKPGRPIETYIFAMFDENGKKGPETERHWGLFAPNRQPRYQINFN
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query255 2.2.26 [Sep-21-2011]
P52408350 Glucan endo-1,3-beta-gluc N/A no 0.992 0.722 0.598 1e-89
Q03773347 Glucan endo-1,3-beta-gluc no no 0.996 0.731 0.552 6e-83
P36401339 Glucan endo-1,3-beta-gluc N/A no 0.992 0.746 0.547 5e-80
P07979370 Lichenase OS=Nicotiana pl N/A no 0.992 0.683 0.513 3e-71
A7PQW3344 Glucan endo-1,3-beta-gluc no no 0.996 0.738 0.498 2e-70
P52407374 Glucan endo-1,3-beta-gluc N/A no 0.992 0.676 0.5 1e-69
P15797371 Glucan endo-1,3-beta-gluc N/A no 0.988 0.679 0.503 2e-69
P23431365 Glucan endo-1,3-beta-gluc N/A no 0.988 0.690 0.5 3e-69
P27666370 Glucan endo-1,3-beta-gluc N/A no 0.988 0.681 0.5 6e-69
P23546370 Glucan endo-1,3-beta-gluc N/A no 0.988 0.681 0.5 1e-68
>sp|P52408|E13B_PRUPE Glucan endo-1,3-beta-glucosidase, basic isoform OS=Prunus persica GN=GNS1 PE=3 SV=1 Back     alignment and function desciption
 Score =  329 bits (843), Expect = 1e-89,   Method: Compositional matrix adjust.
 Identities = 170/284 (59%), Positives = 212/284 (74%), Gaps = 31/284 (10%)

Query: 1   MRLYDPNREALEALRGSNIEVTLGLPNDDLRRIASNQAEANTWVQNNVRNFANNVKFKYI 60
           MRLYDPN  ALEALRGSNI++ LG+PN++L+ IA +QA AN WVQNNVRN+AN VKFKYI
Sbjct: 69  MRLYDPNPAALEALRGSNIKLLLGVPNENLQYIALSQANANAWVQNNVRNYAN-VKFKYI 127

Query: 61  AVGNDAKPGDNFAQYLVPAMRNIQSAVNGAGLGNQIKVSTAIETGALGESFPPSRGSFKQ 120
           AVGN+ KP D+FAQ+LVPAMRNIQ A++ AGL  +IKVSTAI+TG LGE+FPPS GSFK 
Sbjct: 128 AVGNEVKPSDSFAQFLVPAMRNIQEAISLAGLAKKIKVSTAIDTGVLGETFPPSIGSFKS 187

Query: 121 DYRPILDPLIRFLNENRSPLLVNLYPYFAIADNRQ-ISLDYALFRKPAGVA-----GHRD 174
           +Y  +L P+IRFL  ++SPLLVNLYPYFA + N Q I LDYALF  P+ V      G+R+
Sbjct: 188 EYNALLYPIIRFLVSHQSPLLVNLYPYFAYSGNTQDIRLDYALFTAPSVVVQDGNFGYRN 247

Query: 175 IGERVADGWW-------GRAL----------------TNVDNARTYNNNLIQHVKRRSPK 211
           + + + DG +       G +L                T +DNART+ +NLIQHVK  +P+
Sbjct: 248 LFDAMLDGVYAALEKAGGGSLKVVISETGWPSAAGTATTIDNARTFISNLIQHVKEGTPR 307

Query: 212 KPGRPIETYIFAMFDENGKKGPETERHWGLFAPNRQPRYQINFN 255
           +PGRPIETYIFAMFDEN +K PE E+HWGLF+P +QP+YQI+FN
Sbjct: 308 RPGRPIETYIFAMFDEN-RKTPELEKHWGLFSPTKQPKYQISFN 350
Is thought to be an important plant defense-related product against fungal pathogens.
Prunus persica (taxid: 3760)
EC: 3EC: .EC: 2EC: .EC: 1EC: .EC: 3EC: 9
>sp|Q03773|E13A_SOYBN Glucan endo-1,3-beta-glucosidase OS=Glycine max PE=1 SV=1 Back     alignment and function description
>sp|P36401|E13H_TOBAC Glucan endo-1,3-beta-glucosidase, acidic isoform PR-Q' OS=Nicotiana tabacum PE=1 SV=1 Back     alignment and function description
>sp|P07979|GUB_NICPL Lichenase OS=Nicotiana plumbaginifolia GN=GN1 PE=2 SV=3 Back     alignment and function description
>sp|A7PQW3|E13B_VITVI Glucan endo-1,3-beta-glucosidase OS=Vitis vinifera GN=VIT_06s0061g00120 PE=1 SV=2 Back     alignment and function description
>sp|P52407|E13B_HEVBR Glucan endo-1,3-beta-glucosidase, basic vacuolar isoform OS=Hevea brasiliensis GN=HGN1 PE=1 SV=2 Back     alignment and function description
>sp|P15797|E13B_TOBAC Glucan endo-1,3-beta-glucosidase, basic vacuolar isoform OS=Nicotiana tabacum PE=1 SV=2 Back     alignment and function description
>sp|P23431|E13B_NICPL Glucan endo-1,3-beta-glucosidase, basic vacuolar isoform OS=Nicotiana plumbaginifolia GN=GN2 PE=3 SV=1 Back     alignment and function description
>sp|P27666|E13F_TOBAC Glucan endo-1,3-beta-glucosidase, basic vacuolar isoform GLB OS=Nicotiana tabacum PE=2 SV=1 Back     alignment and function description
>sp|P23546|E13E_TOBAC Glucan endo-1,3-beta-glucosidase, basic vacuolar isoform GGIB50 OS=Nicotiana tabacum PE=1 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query255
2274915336 beta-1,3-glucanase [Citrus sinensis] 1.0 0.758 0.8 1e-122
147667132337 beta-1,3-glucanase [Citrus unshiu] 0.996 0.753 0.693 1e-102
63333659336 beta-1,3-glucanase class III [Citrus cle 0.980 0.744 0.679 2e-99
261942365341 glucanase [Litchi chinensis] 0.984 0.736 0.629 5e-92
313600351346 beta-1,3-glucanase [Malus hupehensis] 0.992 0.731 0.616 5e-91
256372804346 beta-1,3-glucanase [Malus hupehensis] 0.992 0.731 0.609 5e-90
16903142350 beta-1,3-glucanase [Prunus persica] 0.992 0.722 0.598 6e-88
1706548350 RecName: Full=Glucan endo-1,3-beta-gluco 0.992 0.722 0.598 8e-88
123243472353 beta-1,3-glucanase 1 [Prunus avium] 0.992 0.716 0.591 7e-87
16903144343 beta-1,3-glucanase [Prunus persica] 0.984 0.731 0.588 4e-86
>gi|2274915|emb|CAA03908.1| beta-1,3-glucanase [Citrus sinensis] Back     alignment and taxonomy information
 Score =  442 bits (1136), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 228/285 (80%), Positives = 235/285 (82%), Gaps = 30/285 (10%)

Query: 1   MRLYDPNREALEALRGSNIEVTLGLPNDDLRRIASNQAEANTWVQNNVRNFANNVKFKYI 60
           MRLYDPNREALEALRGSNIEV LGLPNDDLRRIASNQAEANTWVQNNVRNFANNVKFKYI
Sbjct: 52  MRLYDPNREALEALRGSNIEVMLGLPNDDLRRIASNQAEANTWVQNNVRNFANNVKFKYI 111

Query: 61  AVGNDAKPGDNFAQYLVPAMRNIQSAVNGAGLGNQIKVSTAIETGALGESFPPSRGSFKQ 120
           AVGN+AKPGDNFAQYLVPAMRNIQ+A+N AGLGNQIKVSTAIETGALGESFPPSRGSFKQ
Sbjct: 112 AVGNEAKPGDNFAQYLVPAMRNIQNAINRAGLGNQIKVSTAIETGALGESFPPSRGSFKQ 171

Query: 121 DYRPILDPLIRFLNENRSPLLVNLYPYFAIADNRQISLDYALFRKPAGVA-----GHRDI 175
           DYRPILDPLIRFLNENRSPLLVNLYPYFAIA NRQISLDYALFR    V       +R +
Sbjct: 172 DYRPILDPLIRFLNENRSPLLVNLYPYFAIAGNRQISLDYALFRSQQTVVSDGSLSYRSL 231

Query: 176 GERVAD---------------------GW----WGRALTNVDNARTYNNNLIQHVKRRSP 210
            + + D                     GW       ALTNVDNARTYNNNLIQHVKR SP
Sbjct: 232 FDAILDAVYAALEKTGGGSLDIVISESGWPTAGGDGALTNVDNARTYNNNLIQHVKRGSP 291

Query: 211 KKPGRPIETYIFAMFDENGKKGPETERHWGLFAPNRQPRYQINFN 255
           KKPGRPIETYIFAMFDENGK GPE ERHWGLFAP RQPRYQINFN
Sbjct: 292 KKPGRPIETYIFAMFDENGKTGPEIERHWGLFAPTRQPRYQINFN 336

Source: Citrus sinensis

Species: Citrus sinensis

Genus: Citrus

Family: Rutaceae

Order: Sapindales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|147667132|gb|ABQ45848.1| beta-1,3-glucanase [Citrus unshiu] Back     alignment and taxonomy information
>gi|63333659|gb|AAY40462.1| beta-1,3-glucanase class III [Citrus clementina x Citrus reticulata] Back     alignment and taxonomy information
>gi|261942365|gb|ACY06774.1| glucanase [Litchi chinensis] Back     alignment and taxonomy information
>gi|313600351|gb|ADR71671.1| beta-1,3-glucanase [Malus hupehensis] Back     alignment and taxonomy information
>gi|256372804|gb|ACU78080.1| beta-1,3-glucanase [Malus hupehensis] Back     alignment and taxonomy information
>gi|16903142|gb|AAL30425.1|AF435088_1 beta-1,3-glucanase [Prunus persica] Back     alignment and taxonomy information
>gi|1706548|sp|P52408.1|E13B_PRUPE RecName: Full=Glucan endo-1,3-beta-glucosidase, basic isoform; AltName: Full=(1->3)-beta-glucan endohydrolase; Short=(1->3)-beta-glucanase; AltName: Full=Beta-1,3-endoglucanase; AltName: Full=PpGns1; Flags: Precursor gi|1222556|gb|AAA92013.1| beta-1,3-glucanase [Prunus persica] Back     alignment and taxonomy information
>gi|123243472|gb|ABM74067.1| beta-1,3-glucanase 1 [Prunus avium] Back     alignment and taxonomy information
>gi|16903144|gb|AAL30426.1|AF435089_1 beta-1,3-glucanase [Prunus persica] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query255
TAIR|locus:2082568340 BG1 ""beta-1,3-glucanase 1"" [ 0.662 0.497 0.582 2.9e-74
TAIR|locus:2082518341 BG3 ""beta-1,3-glucanase 3"" [ 0.639 0.478 0.564 1.2e-73
TAIR|locus:2082543339 BGL2 ""beta-1,3-glucanase 2"" 0.623 0.469 0.524 9.8e-66
TAIR|locus:2130329344 AT4G16260 [Arabidopsis thalian 0.701 0.520 0.491 4.2e-61
TAIR|locus:2164991 506 AT5G56590 [Arabidopsis thalian 0.662 0.333 0.401 3.3e-51
TAIR|locus:2161710 465 AT5G55180 [Arabidopsis thalian 0.658 0.361 0.426 9.7e-46
TAIR|locus:2118339 534 AT4G29360 [Arabidopsis thalian 0.662 0.316 0.380 9.5e-44
TAIR|locus:2065403 501 AT2G01630 [Arabidopsis thalian 0.643 0.327 0.403 6.8e-42
TAIR|locus:2098585 460 AT3G07320 [Arabidopsis thalian 0.635 0.352 0.389 7.2e-42
TAIR|locus:2116327 455 AT4G26830 [Arabidopsis thalian 0.658 0.369 0.388 3.2e-41
TAIR|locus:2082568 BG1 ""beta-1,3-glucanase 1"" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 520 (188.1 bits), Expect = 2.9e-74, Sum P(2) = 2.9e-74
 Identities = 99/170 (58%), Positives = 130/170 (76%)

Query:     1 MRLYDPNREALEALRGSNIEVTLGLPNDDLRRIASNQAEANTWVQNNVRNFANNVKFKYI 60
             +RLY P+ + L ALRGSNIEVTLGLPN  L+ +AS+Q++AN WVQ  V N+AN V+F+YI
Sbjct:    56 VRLYSPDHDVLAALRGSNIEVTLGLPNSYLQSVASSQSQANAWVQTYVMNYANGVRFRYI 115

Query:    61 AVGNDAKPGDNFAQYLVPAMRNIQSAVNGAGLGNQIKVSTAIETGALGESFPPSRGSFKQ 120
             +VGN+ K  D++AQ+LVPAM NI  AV  AGLG +IKVST+++ G L ES+PPS+GSF+ 
Sbjct:   116 SVGNEVKISDSYAQFLVPAMENIDRAVLAAGLGGRIKVSTSVDMGVLRESYPPSKGSFRG 175

Query:   121 DYRPILDPLIRFLNENRSPLLVNLYPYFAIADN-RQISLDYALFRKPAGV 169
             D   +++P+IRFL    SPLL+NLY YF+ A N  QI LDYALF  P+G+
Sbjct:   176 DVMVVMEPIIRFLVSKNSPLLLNLYTYFSYAGNVGQIRLDYALFTAPSGI 225
GO:0003824 "catalytic activity" evidence=IEA
GO:0004553 "hydrolase activity, hydrolyzing O-glycosyl compounds" evidence=IEA;ISS
GO:0005576 "extracellular region" evidence=ISM
GO:0005975 "carbohydrate metabolic process" evidence=IEA
GO:0043169 "cation binding" evidence=IEA
TAIR|locus:2082518 BG3 ""beta-1,3-glucanase 3"" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2082543 BGL2 ""beta-1,3-glucanase 2"" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2130329 AT4G16260 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2164991 AT5G56590 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2161710 AT5G55180 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2118339 AT4G29360 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2065403 AT2G01630 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2098585 AT3G07320 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2116327 AT4G26830 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer3.2.1.390.914
3rd Layer3.2.10.921

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
GSVIVG00025346001
SubName- Full=Chromosome chr8 scaffold_34, whole genome shotgun sequence; (345 aa)
(Vitis vinifera)
Predicted Functional Partners:
CHIT3
RecName- Full=Acidic endochitinase; EC=3.2.1.14; Flags- Precursor;; Defense against chitin cont [...] (297 aa)
      • 0.480

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query255
pfam00332310 pfam00332, Glyco_hydro_17, Glycosyl hydrolases fam 1e-109
>gnl|CDD|215863 pfam00332, Glyco_hydro_17, Glycosyl hydrolases family 17 Back     alignment and domain information 
 Score =  318 bits (816), Expect = e-109
 Identities = 141/282 (50%), Positives = 185/282 (65%), Gaps = 29/282 (10%)

Query: 1   MRLYDPNREALEALRGSNIEVTLGLPNDDLRRIASNQAEANTWVQNNVRNFANNVKFKYI 60
           MR+YDP+ +AL+ALRGS I V LG+PNDDL  +A +Q+ A +WVQ+NVR +A  VK +YI
Sbjct: 30  MRIYDPDTKALKALRGSGINVILGVPNDDLAELAGSQSNAASWVQDNVRPYAPKVKIRYI 89

Query: 61  AVGNDAKPGDNFAQYLVPAMRNIQSAVNGAGLGNQIKVSTAIETGALGESFPPSRGSFKQ 120
           AVGN+  PG     +LVPAMRNI++A+  AGLGN+IKVST++    LG SFPPS GSF+ 
Sbjct: 90  AVGNEVSPGTT-QSFLVPAMRNIRNALTAAGLGNKIKVSTSVRFDILGNSFPPSYGSFRV 148

Query: 121 DYRPILDPLIRFLNENRSPLLVNLYPYFAIADN-RQISLDYALFRKPAGV---------- 169
           + R  +DP+I FL    +PLL N+YPYFA ++N R ISL+YALF+    V          
Sbjct: 149 ETRSFMDPIIVFLAGTNAPLLANVYPYFAYSNNPRDISLNYALFQPGTTVVDGGLGYQNL 208

Query: 170 --------------AGHRDIGERVADGWW---GRALTNVDNARTYNNNLIQHVKRRSPKK 212
                         AG   +   V++  W   G     ++NARTYN NLI HVK+ +PK+
Sbjct: 209 FDAMVDAVYAALEKAGGPSVEVVVSESGWPSDGGFAATIENARTYNQNLINHVKKGTPKR 268

Query: 213 PGRPIETYIFAMFDENGKKGPETERHWGLFAPNRQPRYQINF 254
           PG  IETY+FAMFDEN K G   E+H+GLF PN+QP+Y I+F
Sbjct: 269 PGWAIETYVFAMFDENQKPGESVEKHFGLFYPNKQPKYPIDF 310

Length = 310

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 255
PF00332310 Glyco_hydro_17: Glycosyl hydrolases family 17; Int 100.0
COG5309305 Exo-beta-1,3-glucanase [Carbohydrate transport and 100.0
PF03198314 Glyco_hydro_72: Glucanosyltransferase; InterPro: I 97.39
PF07745332 Glyco_hydro_53: Glycosyl hydrolase family 53; Inte 95.66
PRK10150604 beta-D-glucuronidase; Provisional 80.87
>PF00332 Glyco_hydro_17: Glycosyl hydrolases family 17; InterPro: IPR000490 O-Glycosyl hydrolases 3 Back     alignment and domain information 
Probab=100.00  E-value=7.2e-78  Score=552.75  Aligned_cols=252  Identities=49%  Similarity=0.910  Sum_probs=207.1

Q ss_pred             CccccCCHHHHHHHhCCCCeEEEEcCcccHHHhhhCHHHHHHHHHhhcccCCCCceEEEEEeccccCCCCCchhhHHHHH
Q 039652            1 MRLYDPNREALEALRGSNIEVTLGLPNDDLRRIASNQAEANTWVQNNVRNFANNVKFKYIAVGNDAKPGDNFAQYLVPAM   80 (255)
Q Consensus         1 vrlyd~d~~vl~A~~~t~i~v~vgv~n~~l~~la~~~~~A~~Wv~~nv~~~~~~~~I~~I~VGNEvl~~~~~~~~Lv~am   80 (255)
                      |||||+|+++|+||++|||+|+|+|+|++|+++++++..|..||++||.+|+|+++|++|+||||++...+ ...|||||
T Consensus        30 vri~d~~~~iL~a~a~S~i~v~v~vpN~~l~~la~~~~~A~~Wv~~nv~~~~~~~~i~~i~VGnEv~~~~~-~~~lvpAm  108 (310)
T PF00332_consen   30 VRIYDADPSILRAFAGSGIEVMVGVPNEDLASLASSQSAAGSWVRTNVLPYLPAVNIRYIAVGNEVLTGTD-NAYLVPAM  108 (310)
T ss_dssp             EEESS--HHHHHHHTTS--EEEEEE-GGGHHHHHHHHHHHHHHHHHHTCTCTTTSEEEEEEEEES-TCCSG-GGGHHHHH
T ss_pred             EEeecCcHHHHHHHhcCCceeeeccChHHHHHhccCHHHHhhhhhhcccccCcccceeeeecccccccCcc-ceeeccHH
Confidence            79999999999999999999999999999999999999999999999999999999999999999998653 23899999


Q ss_pred             HHHHHHHHhCCCCCceEEecccccCcccccCCCCccccccCchhhhHHHHHHHhhcCCcceeccccccccccC-cccccc
Q 039652           81 RNIQSAVNGAGLGNQIKVSTAIETGALGESFPPSRGSFKQDYRPILDPLIRFLNENRSPLLVNLYPYFAIADN-RQISLD  159 (255)
Q Consensus        81 ~nv~~aL~~~gL~~~IkVsT~~s~~~l~~s~pPS~g~F~~~~~~~~~~~l~fL~~~~sp~~vNiyPyf~~~~~-~~~~l~  159 (255)
                      +|+|++|.+.||+++|||+|+|++++|..+||||+|.|++++.++|+++++||.+|+||||+|+||||+|..+ ..++|+
T Consensus       109 ~ni~~aL~~~~L~~~IkVst~~~~~vl~~s~PPS~g~F~~~~~~~~~~~l~fL~~t~spf~vN~yPyfa~~~~~~~~~l~  188 (310)
T PF00332_consen  109 QNIHNALTAAGLSDQIKVSTPHSMDVLSNSFPPSAGVFRSDIASVMDPLLKFLDGTNSPFMVNVYPYFAYQNNPQNISLD  188 (310)
T ss_dssp             HHHHHHHHHTT-TTTSEEEEEEEGGGEEE-SSGGG-EESHHHHHHHHHHHHHHHHHT--EEEE--HHHHHHHSTTTS-HH
T ss_pred             HHHHHHHHhcCcCCcceeccccccccccccCCCccCcccccchhhhhHHHHHhhccCCCceeccchhhhccCCcccCCcc
Confidence            9999999999999999999999999999999999999999999999999999999999999999999999999 899999


Q ss_pred             cccccCCCccccCCCCC----------------C-------c--e-eeccC--CCCCCCHHHHHHHHHHHHhccccCCCC
Q 039652          160 YALFRKPAGVAGHRDIG----------------E-------R--V-ADGWW--GRALTNVDNARTYNNNLIQHVKRRSPK  211 (255)
Q Consensus       160 yalf~~~~~~~~~~~~~----------------~-------k--v-EtGWP--G~~~as~~na~~y~~~li~~~~~GTp~  211 (255)
                      ||+|++++..+ |+++.                +       +  | |||||  |+.+|+++||++|++|+++|+.+|||+
T Consensus       189 yAlf~~~~~~~-D~~~~y~nlfDa~~da~~~a~~~~g~~~~~vvv~ETGWPs~G~~~a~~~nA~~~~~nl~~~~~~gt~~  267 (310)
T PF00332_consen  189 YALFQPNSGVV-DGGLAYTNLFDAMVDAVYAAMEKLGFPNVPVVVGETGWPSAGDPGATPENAQAYNQNLIKHVLKGTPL  267 (310)
T ss_dssp             HHTT-SSS-SE-ETTEEESSHHHHHHHHHHHHHHTTT-TT--EEEEEE---SSSSTTCSHHHHHHHHHHHHHHCCGBBSS
T ss_pred             ccccccccccc-ccchhhhHHHHHHHHHHHHHHHHhCCCCceeEEeccccccCCCCCCCcchhHHHHHHHHHHHhCCCcc
Confidence            99999876665 55432                1       1  7 99999  778999999999999999999999999


Q ss_pred             CCCCCceEEEEeeecCCCCCCCCCCceeeeecCCCCceeeecc
Q 039652          212 KPGRPIETYIFAMFDENGKKGPETERHWGLFAPNRQPRYQINF  254 (255)
Q Consensus       212 rp~~~i~~yiF~lfdE~~K~g~~~E~~wGlf~~d~~~ky~~~~  254 (255)
                      ||+..+++||||||||+||+++.+|||||||++||++||+|+|
T Consensus       268 ~~~~~~~~y~F~~FdE~~K~~~~~E~~wGlf~~d~~~ky~~~f  310 (310)
T PF00332_consen  268 RPGNGIDVYIFEAFDENWKPGPEVERHWGLFYPDGTPKYDLDF  310 (310)
T ss_dssp             SBSS---EEES-SB--TTSSSSGGGGG--SB-TTSSBSS----
T ss_pred             cCCCCCeEEEEEEecCcCCCCCcccceeeeECCCCCeecCCCC
Confidence            9999999999999999999998899999999999999999986

2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 17 GH17 from CAZY comprises enzymes with several known activities; endo-1,3-beta-glucosidase (3.2.1.39 from EC); lichenase (3.2.1.73 from EC); exo-1,3-glucanase (3.2.1.58 from EC). Currently these enzymes have only been found in plants and in fungi. ; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1AQ0_B 1GHR_A 1GHS_B 2CYG_A 3UR8_A 3UR7_B 3EM5_C 3F55_D.
>COG5309 Exo-beta-1,3-glucanase [Carbohydrate transport and metabolism] Back     alignment and domain information
>PF03198 Glyco_hydro_72: Glucanosyltransferase; InterPro: IPR004886 This family is a group of yeast glycolipid proteins anchored to the membrane Back     alignment and domain information
>PF07745 Glyco_hydro_53: Glycosyl hydrolase family 53; InterPro: IPR011683 O-Glycosyl hydrolases 3 Back     alignment and domain information
>PRK10150 beta-D-glucuronidase; Provisional Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query255
3em5_A316 Crystal Structure Of A Native Endo Beta-1,3-Glucana 2e-71
2cyg_A312 Crystal Structure At 1.45- Resolution Of The Major 1e-65
3ur7_A323 Higher-density Crystal Structure Of Potato Endo-1,3 4e-62
4gzi_A323 Active-site Mutant Of Potato Endo-1,3-beta-glucanas 5e-62
1aq0_A306 Barley 1,3-1,4-Beta-Glucanase In Monoclinic Space G 1e-46
1ghs_A306 The Three-Dimensional Structures Of Two Plant Beta- 1e-43
>pdb|3EM5|A Chain A, Crystal Structure Of A Native Endo Beta-1,3-Glucanase (Hev B 2), A Major Allergen From Hevea Brasiliensis Length = 316 Back     alignment and structure 
Iteration: 1

 Score =  265 bits (677), Expect = 2e-71,   Method: Compositional matrix adjust.
 Identities = 144/288 (50%), Positives = 189/288 (65%), Gaps = 35/288 (12%)
Query: 1   MRLYDPNREALEALRGSNIEVTLGLPNDDLRRIASNQAEANTWVQNNVRNFANNVKFKYI 60
           MR+YDPN+  LEALRGSNIE+ LG+PN DL+ + +N + A +WVQ NVR F ++V+F+YI
Sbjct: 31  MRIYDPNQAVLEALRGSNIELILGVPNSDLQSL-TNPSNAKSWVQKNVRGFWSSVRFRYI 89
Query: 61  AVGNDAKPGDN----FAQYLVPAMRNIQSAVNGAGLGNQIKVSTAIETGALGESFPPSRG 116
           AVGN+  P +      AQ+++PAMRNI  A+  AGL +QIKVSTAI+   +G S+PPS G
Sbjct: 90  AVGNEISPVNRGTAWLAQFVLPAMRNIHDAIRSAGLQDQIKVSTAIDLTLVGNSYPPSAG 149
Query: 117 SFKQDYRPILDPLIRFLNENRSPLLVNLYPYFAIADN-RQISLDYALFRKPAGVA----- 170
           +F+ D R  L+P+IRFL+  RSPLL N+YPYF  A N R ISL YALF  P+ V      
Sbjct: 150 AFRDDVRSYLNPIIRFLSSIRSPLLANIYPYFTYAGNPRDISLPYALFTSPSVVVWDGQR 209
Query: 171 GHRDIGERVAD---------------------GW--WGRALTNVDNARTYNNNLIQHVKR 207
           G++++ +   D                     GW   G      DN RTY +NLIQHVKR
Sbjct: 210 GYKNLFDATLDALYSALERASGGSLEVVVSESGWPSAGAFAATFDNGRTYLSNLIQHVKR 269
Query: 208 RSPKKPGRPIETYIFAMFDENGKKGPETERHWGLFAPNRQPRYQINFN 255
            +PK+P R IETY+FAMFDEN KK PE E+H+GLF PN+  +Y +NF+
Sbjct: 270 GTPKRPKRAIETYLFAMFDEN-KKQPEVEKHFGLFFPNKWQKYNLNFS 316
>pdb|2CYG|A Chain A, Crystal Structure At 1.45- Resolution Of The Major Allergen Endo-Beta-1,3-Glucanase Of Banana As A Molecular Basis For The Latex-Fruit Syndrome Length = 312 Back     alignment and structure
>pdb|3UR7|A Chain A, Higher-density Crystal Structure Of Potato Endo-1,3-beta-glucanase Length = 323 Back     alignment and structure
>pdb|4GZI|A Chain A, Active-site Mutant Of Potato Endo-1,3-beta-glucanase In Complex With Laminaratriose Length = 323 Back     alignment and structure
>pdb|1AQ0|A Chain A, Barley 1,3-1,4-Beta-Glucanase In Monoclinic Space Group Length = 306 Back     alignment and structure
>pdb|1GHS|A Chain A, The Three-Dimensional Structures Of Two Plant Beta-Glucan Endohydrolases With Distinct Substrate Specificities Length = 306 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query255
2cyg_A312 Beta-1, 3-glucananse; endo-beta-1,3-glucanase, (be 7e-82
1ghs_A306 1,3-beta-glucanase; hydrolase; 2.30A {Hordeum vulg 3e-78
3em5_A316 Beta-1,3-glucanase; glycoprotein, rossmann fold, ( 2e-75
1aq0_A306 1,3-1,4-beta-glucanase; hydrolase, glycosidase, gl 2e-74
3ur8_A323 Glucan endo-1,3-beta-D-glucosidase; glucoside hydr 5e-74
>2cyg_A Beta-1, 3-glucananse; endo-beta-1,3-glucanase, (beta-alpha)8-TIM-barrel, B-cell epitopes, allergen, banana, hydrolase; 1.45A {Musa acuminata} SCOP: c.1.8.3 Length = 312 Back     alignment and structure
 Score =  247 bits (631), Expect = 7e-82
 Identities = 132/284 (46%), Positives = 181/284 (63%), Gaps = 31/284 (10%)

Query: 1   MRLYDPNREALEALRGSNIEVTLGLPNDDLRRIASNQAEANTWVQNNVRNFANNVKFKYI 60
           MRLYDPN+ AL+ALR SNI+V L +P  D++ +ASN + A  W++ NV  +  +V F+YI
Sbjct: 30  MRLYDPNQAALQALRNSNIQVLLDVPRSDVQSLASNPSAAGDWIRRNVVAYWPSVSFRYI 89

Query: 61  AVGNDAKPGDNFAQYLVPAMRNIQSAVNGAGLGNQIKVSTAIETGALGESFPPSRGSFKQ 120
           AVGN+  PG + AQY++PAMRNI +A++ AGL NQIKVSTA++TG LG S+PPS G+F  
Sbjct: 90  AVGNELIPGSDLAQYILPAMRNIYNALSSAGLQNQIKVSTAVDTGVLGTSYPPSAGAFSS 149

Query: 121 DYRPILDPLIRFLNENRSPLLVNLYPYFA-IADNRQISLDYALFRKPAGV---------- 169
             +  L P+++FL  N +PLLVN+YPYF+   +  QISL YALF     V          
Sbjct: 150 AAQAYLSPIVQFLASNGAPLLVNVYPYFSYTGNPGQISLPYALFTASGVVVQDGRFSYQN 209

Query: 170 ---------------AGHRDIGERVAD-GWW---GRALTNVDNARTYNNNLIQHVKRRSP 210
                           G  ++   V++ GW    G A  +  NA+TYN NLI+HV   +P
Sbjct: 210 LFDAIVDAVFAALERVGGANVAVVVSESGWPSAGGGAEASTSNAQTYNQNLIRHVGGGTP 269

Query: 211 KKPGRPIETYIFAMFDENGKKGPETERHWGLFAPNRQPRYQINF 254
           ++PG+ IE YIF MF+EN K G   E+++GLF PN+QP YQI+F
Sbjct: 270 RRPGKEIEAYIFEMFNENQKAGG-IEQNFGLFYPNKQPVYQISF 312
>1ghs_A 1,3-beta-glucanase; hydrolase; 2.30A {Hordeum vulgare} SCOP: c.1.8.3 Length = 306 Back     alignment and structure
>3em5_A Beta-1,3-glucanase; glycoprotein, rossmann fold, (beta-alpha)8-TIM-barrel, glyco hydrolase, allergen; HET: NAG FUC MAN; 2.50A {Hevea brasiliensis} PDB: 3f55_A* Length = 316 Back     alignment and structure
>1aq0_A 1,3-1,4-beta-glucanase; hydrolase, glycosidase, glycoprotein, glycosylated protein; HET: NAG; 2.00A {Hordeum vulgare} SCOP: c.1.8.3 PDB: 1ghr_A Length = 306 Back     alignment and structure
>3ur8_A Glucan endo-1,3-beta-D-glucosidase; glucoside hydrolase, GH17 family, pathogenesis-related class protein (PR-2), TIM barrel; 1.26A {Solanum tuberosum} PDB: 3ur7_A Length = 323 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query255
3em5_A316 Beta-1,3-glucanase; glycoprotein, rossmann fold, ( 100.0
3ur8_A323 Glucan endo-1,3-beta-D-glucosidase; glucoside hydr 100.0
2cyg_A312 Beta-1, 3-glucananse; endo-beta-1,3-glucanase, (be 100.0
1aq0_A306 1,3-1,4-beta-glucanase; hydrolase, glycosidase, gl 100.0
1ghs_A306 1,3-beta-glucanase; hydrolase; 2.30A {Hordeum vulg 100.0
2w61_A 555 GAS2P, glycolipid-anchored surface protein 2; glyc 99.76
1fob_A334 Beta-1,4-galactanase; B/A barrel, glycosyl hydrola 98.6
1hjs_A332 Beta-1,4-galactanase; 4-galactanases, family 53 gl 98.55
1ur4_A399 Galactanase; hydrolase, beta-1, glycoside hydrolas 97.93
4ekj_A 500 Beta-xylosidase; TIM-barrel fold, hemicellulase, h 96.13
3civ_A343 Endo-beta-1,4-mannanase; TIM barrel, hydrolase; 1. 96.09
1w91_A 503 Beta-xylosidase; MAD, seMet, tetramer, hydrolase; 94.12
3lpf_A605 Beta-glucuronidase; alpha/beta barrel, sugar-bindi 92.18
3hn3_A613 Beta-G1, beta-glucuronidase; lysosomal enzyme, aci 91.86
1uhv_A 500 Beta-xylosidase; family 39 glycoside hydrolase, xy 90.26
3cmg_A 667 Putative beta-galactosidase; structural genomics, 85.94
3pzt_A327 Endoglucanase; alpha/beta barrel, glycosyl hydrola 82.95
7a3h_A303 Endoglucanase; hydrolase, cellulose degradation, g 81.15
1bqc_A302 Protein (beta-mannanase); glycosyl hydrolase, fami 80.96
>3em5_A Beta-1,3-glucanase; glycoprotein, rossmann fold, (beta-alpha)8-TIM-barrel, glyco hydrolase, allergen; HET: NAG FUC MAN; 2.50A {Hevea brasiliensis} SCOP: c.1.8.3 PDB: 3f55_A* Back     alignment and structure
Probab=100.00  E-value=2.3e-85  Score=601.21  Aligned_cols=253  Identities=57%  Similarity=0.978  Sum_probs=239.9

Q ss_pred             CccccCCHHHHHHHhCCCCeEEEEcCcccHHHhhhCHHHHHHHHHhhcccCCCCceEEEEEeccccCCCCC-c---hhhH
Q 039652            1 MRLYDPNREALEALRGSNIEVTLGLPNDDLRRIASNQAEANTWVQNNVRNFANNVKFKYIAVGNDAKPGDN-F---AQYL   76 (255)
Q Consensus         1 vrlyd~d~~vl~A~~~t~i~v~vgv~n~~l~~la~~~~~A~~Wv~~nv~~~~~~~~I~~I~VGNEvl~~~~-~---~~~L   76 (255)
                      |||||+||++|+||++|||+|+|||||+++++++ ++++|.+||++||.+|+|.++|++|+||||++.+++ .   ++.|
T Consensus        31 VRlYdaD~~vL~Al~~sgi~v~vGV~n~~l~~la-~~~~A~~WV~~nV~~y~p~~~I~~IaVGNEvl~~~~~t~~~~~~L  109 (316)
T 3em5_A           31 MRIYDPNQAVLEALRGSNIELILGVPNSDLQSLT-NPSNAKSWVQKNVRGFWSSVRFRYIAVGNEISPVNRGTAWLAQFV  109 (316)
T ss_dssp             EECSSCCHHHHHHHTTCCCEEEEEECGGGHHHHT-SHHHHHHHHHHHTGGGTTTSCEEEEEEEESCCTTCTTTGGGHHHH
T ss_pred             EEEecCCHHHHHHhhcCCceEEEecccchhhhcc-CHHHHHHHHHHhhhhcCCCceEEEEEEecccccCCCccccCHHHH
Confidence            7999999999999999999999999999999999 999999999999999999999999999999998765 3   8999


Q ss_pred             HHHHHHHHHHHHhCCCCCceEEecccccCcccccCCCCccccccCchhhhHHHHHHHhhcCCcceeccccccccccC-cc
Q 039652           77 VPAMRNIQSAVNGAGLGNQIKVSTAIETGALGESFPPSRGSFKQDYRPILDPLIRFLNENRSPLLVNLYPYFAIADN-RQ  155 (255)
Q Consensus        77 v~am~nv~~aL~~~gL~~~IkVsT~~s~~~l~~s~pPS~g~F~~~~~~~~~~~l~fL~~~~sp~~vNiyPyf~~~~~-~~  155 (255)
                      +|||+|||++|+++||+++|||||+|++++|.+|||||+|+|++++.++|+|||+||++++||||||+||||+|..+ .+
T Consensus       110 vpAm~nv~~AL~~aGL~~~IkVsT~~s~~vl~~s~pPS~g~F~~~~~~~~~pil~fL~~~~sp~~vN~YPyf~~~~~~~~  189 (316)
T 3em5_A          110 LPAMRNIHDAIRSAGLQDQIKVSTAIDLTLVGNSYPPSAGAFRDDVRSYLNPIIRFLSSIRSPLLANIYPYFTYAGNPRD  189 (316)
T ss_dssp             HHHHHHHHHHHHHTTCTTTSEEEEEECTTSEEECSSGGGCEECGGGHHHHHHHHHHHHHTTCCEEEECCHHHHHHHCTTT
T ss_pred             HHHHHHHHHHHHHCCCCCceEEEecccccccccCCCCCCceechhHHHHHHHHHHHHHhcCCeeEeecchhhhccCCCCC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999988 89


Q ss_pred             cccccccccCCCccccCCCCC----------------------Cc---e-eeccC--CCCCCCHHHHHHHHHHHHhcccc
Q 039652          156 ISLDYALFRKPAGVAGHRDIG----------------------ER---V-ADGWW--GRALTNVDNARTYNNNLIQHVKR  207 (255)
Q Consensus       156 ~~l~yalf~~~~~~~~~~~~~----------------------~k---v-EtGWP--G~~~as~~na~~y~~~li~~~~~  207 (255)
                      |+|+||||++.+.+++|+++.                      .+   | |||||  |+..||++||++|+++++||+++
T Consensus       190 i~l~yAlf~~~~~~~~~~~~~Y~nlfDa~~Da~~~Al~~~g~~~~~v~V~EtGWPs~G~~~as~~na~~y~~~li~~~~~  269 (316)
T 3em5_A          190 ISLPYALFTSPSVVVWDGQRGYKNLFDATLDALYSALERASGGSLEVVVSESGWPSAGAFAATFDNGRTYLSNLIQHVKR  269 (316)
T ss_dssp             SCHHHHTTCCSSCSEEETTEEECSHHHHHHHHHHHHHHHTTCTTCCEEEEEECCCSSSSTTCCHHHHHHHHHHHHHHTTS
T ss_pred             cCchhhcccCCCcccCCCCccHHHHHHHHHHHHHHHHHHcCCCCCceEeccccCCCCCCCCCCHHHHHHHHHHHHHhccC
Confidence            999999999876666676543                      12   7 99999  77899999999999999999988


Q ss_pred             CCCCCCCCCceEEEEeeecCCCCCCCCCCceeeeecCCCCceeeeccC
Q 039652          208 RSPKKPGRPIETYIFAMFDENGKKGPETERHWGLFAPNRQPRYQINFN  255 (255)
Q Consensus       208 GTp~rp~~~i~~yiF~lfdE~~K~g~~~E~~wGlf~~d~~~ky~~~~~  255 (255)
                      |||+||+..+++||||||||+||+ ++.|||||||++|++|||+|+|+
T Consensus       270 GTP~rp~~~~~~y~F~lfDe~~K~-~~~E~~~Glf~~d~~~ky~l~~~  316 (316)
T 3em5_A          270 GTPKRPKRAIETYLFAMFDENKKQ-PEVEKHFGLFFPNKWQKYNLNFS  316 (316)
T ss_dssp             CCSSSCSSCCCEEESCSBCCTTCS-SGGGGCCCSBCTTSCBSSCCCCC
T ss_pred             CCCCCCCCCceEEEEEeecCCCCC-CCCCceeeEECCCCCEeecCCCC
Confidence            999999988999999999999999 68999999999999999999985
>3ur8_A Glucan endo-1,3-beta-D-glucosidase; glucoside hydrolase, GH17 family, pathogenesis-related class protein (PR-2), TIM barrel; 1.26A {Solanum tuberosum} PDB: 3ur7_A Back     alignment and structure
>2cyg_A Beta-1, 3-glucananse; endo-beta-1,3-glucanase, (beta-alpha)8-TIM-barrel, B-cell epitopes, allergen, banana, hydrolase; 1.45A {Musa acuminata} SCOP: c.1.8.3 Back     alignment and structure
>1aq0_A 1,3-1,4-beta-glucanase; hydrolase, glycosidase, glycoprotein, glycosylated protein; HET: NAG; 2.00A {Hordeum vulgare} SCOP: c.1.8.3 PDB: 1ghr_A Back     alignment and structure
>1ghs_A 1,3-beta-glucanase; hydrolase; 2.30A {Hordeum vulgare} SCOP: c.1.8.3 Back     alignment and structure
>2w61_A GAS2P, glycolipid-anchored surface protein 2; glycoprotein, cell membrane, fungal cell WALL, transglycosyl glucan, membrane, GPI-anchor; 1.62A {Saccharomyces cerevisiae} PDB: 2w62_A* 2w63_A* Back     alignment and structure
>1fob_A Beta-1,4-galactanase; B/A barrel, glycosyl hydrolase, family 53, CLAN GH-A; 1.80A {Aspergillus aculeatus} SCOP: c.1.8.3 PDB: 1fhl_A Back     alignment and structure
>1hjs_A Beta-1,4-galactanase; 4-galactanases, family 53 glycoside hydrolase, thermostability, PH optimum, CLAN GH-A, thermophIle, alkalophIle; HET: NAG EPE; 1.87A {Thielavia heterothallica} SCOP: c.1.8.3 PDB: 1hju_A* 1hjq_A* Back     alignment and structure
>1ur4_A Galactanase; hydrolase, beta-1, glycoside hydrolase, substrate specificity, pectin, GH-A, family 53, plant cell WALL degradation; HET: B2G PGE; 2.2A {Bacillus licheniformis} SCOP: c.1.8.3 PDB: 1r8l_A* 1ur0_A* 2ccr_A* 2j74_A* 2gft_A* Back     alignment and structure
>4ekj_A Beta-xylosidase; TIM-barrel fold, hemicellulase, hydrolase; 2.50A {Caulobacter vibrioides} Back     alignment and structure
>3civ_A Endo-beta-1,4-mannanase; TIM barrel, hydrolase; 1.90A {Alicyclobacillus acidocaldarius} Back     alignment and structure
>1w91_A Beta-xylosidase; MAD, seMet, tetramer, hydrolase; 2.2A {Geobacillus stearothermophilus} SCOP: b.71.1.2 c.1.8.3 PDB: 2bs9_A 2bfg_A* Back     alignment and structure
>3lpf_A Beta-glucuronidase; alpha/beta barrel, sugar-binding domain, beta-sandwich domai glycosyl hydrolase, glycosida hydrolase; HET: Z77; 2.26A {Escherichia coli} PDB: 3k46_A* 3k4d_A* 3lpg_A* 3k4a_A Back     alignment and structure
>3hn3_A Beta-G1, beta-glucuronidase; lysosomal enzyme, acid hydrolase, glycosidase, disease mutat glycoprotein, hydrolase, lysosome, mucopolysaccharidosis; HET: NDG NAG BMA MAN GUP; 1.70A {Homo sapiens} PDB: 1bhg_A* Back     alignment and structure
>1uhv_A Beta-xylosidase; family 39 glycoside hydrolase, xylan, xylose, covalent glycosyl-enzyme intermediate; 2.10A {Thermoanaerobacterium saccharolyticum} SCOP: b.71.1.2 c.1.8.3 PDB: 1px8_A Back     alignment and structure
>3cmg_A Putative beta-galactosidase; structural genomics, PSI-2, Pro structure initiative, NEW YORK SGX research center for STRU genomics, nysgxrc; 1.90A {Bacteroides fragilis} Back     alignment and structure
>3pzt_A Endoglucanase; alpha/beta barrel, glycosyl hydrolase, cellulose binding, HY; 1.97A {Bacillus subtilis subsp} PDB: 3pzu_A 3pzv_A Back     alignment and structure
>7a3h_A Endoglucanase; hydrolase, cellulose degradation, glycoside H family 5, michaelis complex, SKEW-BOAT, distortion; 0.95A {Bacillus agaradhaerens} SCOP: c.1.8.3 PDB: 1h2j_A* 1hf6_A* 1ocq_A* 1w3k_A* 1h11_A* 4a3h_A* 5a3h_A* 6a3h_A* 1w3l_A 8a3h_A* 2v38_A* 1qhz_A 1qi0_A* 1e5j_A* 1qi2_A* 1h5v_A* 1a3h_A 2a3h_A* 3a3h_A* 1lf1_A Back     alignment and structure
>1bqc_A Protein (beta-mannanase); glycosyl hydrolase, family 5, thermomonospora fusca; 1.50A {Thermobifida fusca} SCOP: c.1.8.3 PDB: 2man_A* 3man_A* Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 255
d2cyga1312 c.1.8.3 (A:29-340) Plant beta-glucanases {Banana ( 2e-88
d1ghsa_306 c.1.8.3 (A:) Plant beta-glucanases {Barley (Hordeu 2e-79
d1aq0a_306 c.1.8.3 (A:) Plant beta-glucanases {Barley (Hordeu 4e-78
>d2cyga1 c.1.8.3 (A:29-340) Plant beta-glucanases {Banana (Musa acuminata), 1,3-beta-glucanase [TaxId: 4641]} Length = 312 Back     information, alignment and structure

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: (Trans)glycosidases
family: beta-glycanases
domain: Plant beta-glucanases
species: Banana (Musa acuminata), 1,3-beta-glucanase [TaxId: 4641]

 Score =  262 bits (671), Expect = 2e-88
 Identities = 132/284 (46%), Positives = 181/284 (63%), Gaps = 31/284 (10%)

Query: 1   MRLYDPNREALEALRGSNIEVTLGLPNDDLRRIASNQAEANTWVQNNVRNFANNVKFKYI 60
           MRLYDPN+ AL+ALR SNI+V L +P  D++ +ASN + A  W++ NV  +  +V F+YI
Sbjct: 30  MRLYDPNQAALQALRNSNIQVLLDVPRSDVQSLASNPSAAGDWIRRNVVAYWPSVSFRYI 89

Query: 61  AVGNDAKPGDNFAQYLVPAMRNIQSAVNGAGLGNQIKVSTAIETGALGESFPPSRGSFKQ 120
           AVGN+  PG + AQY++PAMRNI +A++ AGL NQIKVSTA++TG LG S+PPS G+F  
Sbjct: 90  AVGNELIPGSDLAQYILPAMRNIYNALSSAGLQNQIKVSTAVDTGVLGTSYPPSAGAFSS 149

Query: 121 DYRPILDPLIRFLNENRSPLLVNLYPYFA-IADNRQISLDYALFRKPAGV---------- 169
             +  L P+++FL  N +PLLVN+YPYF+   +  QISL YALF     V          
Sbjct: 150 AAQAYLSPIVQFLASNGAPLLVNVYPYFSYTGNPGQISLPYALFTASGVVVQDGRFSYQN 209

Query: 170 ---------------AGHRDIGERVAD-GWW---GRALTNVDNARTYNNNLIQHVKRRSP 210
                           G  ++   V++ GW    G A  +  NA+TYN NLI+HV   +P
Sbjct: 210 LFDAIVDAVFAALERVGGANVAVVVSESGWPSAGGGAEASTSNAQTYNQNLIRHVGGGTP 269

Query: 211 KKPGRPIETYIFAMFDENGKKGPETERHWGLFAPNRQPRYQINF 254
           ++PG+ IE YIF MF+EN K G   E+++GLF PN+QP YQI+F
Sbjct: 270 RRPGKEIEAYIFEMFNENQKAGG-IEQNFGLFYPNKQPVYQISF 312
>d1ghsa_ c.1.8.3 (A:) Plant beta-glucanases {Barley (Hordeum vulgare), 1,3-beta-glucanase [TaxId: 4513]} Length = 306 Back     information, alignment and structure
>d1aq0a_ c.1.8.3 (A:) Plant beta-glucanases {Barley (Hordeum vulgare), 1,3-1,4-beta-glucanase [TaxId: 4513]} Length = 306 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query255
d2cyga1312 Plant beta-glucanases {Banana (Musa acuminata), 1, 100.0
d1ghsa_306 Plant beta-glucanases {Barley (Hordeum vulgare), 1 100.0
d1aq0a_306 Plant beta-glucanases {Barley (Hordeum vulgare), 1 100.0
d1hjsa_332 Beta-1,4-galactanase {Thielavia heterothallica, ak 97.64
d1uhva2346 Beta-D-xylosidase, catalytic domain {Thermoanaerob 97.55
d1foba_334 Beta-1,4-galactanase {Fungus (Aspergillus aculeatu 97.21
d1xyza_320 Xylanase {Clostridium thermocellum, XynZ [TaxId: 1 95.2
d1bhga3304 beta-Glucuronidase, domain 3 {Human (Homo sapiens) 95.1
d1ur4a_387 Beta-1,4-galactanase {Bacillus licheniformis [TaxI 93.92
d1vbua1324 Xylanase {Thermotoga maritima [TaxId: 2336]} 93.57
d1bqca_302 Beta-mannanase {Thermomonospora fusca [TaxId: 2021 91.85
d1wkya2297 Beta-mannanase {Bacillus sp. JAMB-602 [TaxId: 2449 91.63
d1fh9a_312 Xylanase A, catalytic core {Cellulomonas fimi [Tax 89.04
>d2cyga1 c.1.8.3 (A:29-340) Plant beta-glucanases {Banana (Musa acuminata), 1,3-beta-glucanase [TaxId: 4641]} Back     information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: (Trans)glycosidases
family: beta-glycanases
domain: Plant beta-glucanases
species: Banana (Musa acuminata), 1,3-beta-glucanase [TaxId: 4641]

Probab=100.00  E-value=7.4e-74  Score=523.15  Aligned_cols=253  Identities=52%  Similarity=0.912  Sum_probs=237.2

Q ss_pred             CccccCCHHHHHHHhCCCCeEEEEcCcccHHHhhhCHHHHHHHHHhhcccCCCCceEEEEEeccccCCCCCchhhHHHHH
Q 039652            1 MRLYDPNREALEALRGSNIEVTLGLPNDDLRRIASNQAEANTWVQNNVRNFANNVKFKYIAVGNDAKPGDNFAQYLVPAM   80 (255)
Q Consensus         1 vrlyd~d~~vl~A~~~t~i~v~vgv~n~~l~~la~~~~~A~~Wv~~nv~~~~~~~~I~~I~VGNEvl~~~~~~~~Lv~am   80 (255)
                      |||||+||++|+||+++||+|||||||+++++++++++.|.+||+++|++|+|.++|++|+||||++.+++....+||+|
T Consensus        30 IRlY~~d~~vL~A~~~tgi~v~lGv~n~~l~~~~~~~~~a~~wv~~~v~~~~~~~~I~~IaVGNE~l~~~~~~~~~lpa~  109 (312)
T d2cyga1          30 MRLYDPNQAALQALRNSNIQVLLDVPRSDVQSLASNPSAAGDWIRRNVVAYWPSVSFRYIAVGNELIPGSDLAQYILPAM  109 (312)
T ss_dssp             EEESSCCHHHHHHHTTSCCEEEEEECHHHHHHHHHCTTHHHHHHHHHTGGGTTTSEEEEEEEEESCTTTSTTGGGHHHHH
T ss_pred             EEEeCCCHHHHHHHHhcCCEEEEeeccchhhhccCCHHHHHHHHHHHHhccCCCceEEEEEecCEEeeCCcCchhhcccH
Confidence            79999999999999999999999999999999999999999999999999999999999999999998766678899999


Q ss_pred             HHHHHHHHhCCCCCceEEecccccCcccccCCCCccccccCchhhhHHHHHHHhhcCCcceeccccccccccC-cccccc
Q 039652           81 RNIQSAVNGAGLGNQIKVSTAIETGALGESFPPSRGSFKQDYRPILDPLIRFLNENRSPLLVNLYPYFAIADN-RQISLD  159 (255)
Q Consensus        81 ~nv~~aL~~~gL~~~IkVsT~~s~~~l~~s~pPS~g~F~~~~~~~~~~~l~fL~~~~sp~~vNiyPyf~~~~~-~~~~l~  159 (255)
                      +|+|++|+++|+.+.||++|+++++++..|+|||+|.|++++.++|+++++||+.++||||+|+||||++..+ ..++|+
T Consensus       110 ~~~~~aL~~~g~~~~i~~t~~~~~~~~~~s~p~sa~~~~~~~~~~l~~~~~fl~~~~~~~~~n~ypy~~~~~~~~~~~l~  189 (312)
T d2cyga1         110 RNIYNALSSAGLQNQIKVSTAVDTGVLGTSYPPSAGAFSSAAQAYLSPIVQFLASNGAPLLVNVYPYFSYTGNPGQISLP  189 (312)
T ss_dssp             HHHHHHHHHTTCTTTSEEEEEEEGGGBSCCSSGGGCCBCHHHHHHHHHHHHHHHHHTCCEEEECCHHHHHHHSTTTSCHH
T ss_pred             HHHHHHHHHCCCCCCceeeeeeeeeccccCCCCccccccchhHHHHHHHHHHHHhcCCeeeEeccchhhhccCcccccch
Confidence            9999999999999999999999999999999999999999999999999999999999999999999999988 889999


Q ss_pred             cccccCCCccccCCCCC----------------------Cc---e-eeccC--CC-CCCCHHHHHHHHHHHHhccccCCC
Q 039652          160 YALFRKPAGVAGHRDIG----------------------ER---V-ADGWW--GR-ALTNVDNARTYNNNLIQHVKRRSP  210 (255)
Q Consensus       160 yalf~~~~~~~~~~~~~----------------------~k---v-EtGWP--G~-~~as~~na~~y~~~li~~~~~GTp  210 (255)
                      |++|+..+..+.+++..                      +|   | |||||  |+ ..|+++||++|+++|+||+++|||
T Consensus       190 ~a~f~~~~~~~~~~~~~y~n~~d~~~d~~~~a~~~~g~~~~~ivI~EtGWPs~G~~~~as~~na~~y~~~l~~~~~~gtp  269 (312)
T d2cyga1         190 YALFTASGVVVQDGRFSYQNLFDAIVDAVFAALERVGGANVAVVVSESGWPSAGGGAEASTSNAQTYNQNLIRHVGGGTP  269 (312)
T ss_dssp             HHHTCCCSCSEEETTEEECSHHHHHHHHHHHHHHTTTCTTCCEEEEEECCCSSSSSTTSSHHHHHHHHHHHHHHGGGCCS
T ss_pred             hhhccCCCccccccHHHHHHHHHHHHHHHHHHHHHhCCCCCceEEecCCcccCCCCCCCCHHHHHHHHHHHHHHHhcCCC
Confidence            99999875554444321                      23   7 99999  54 579999999999999999999999


Q ss_pred             CCCCCCceEEEEeeecCCCCCCCCCCceeeeecCCCCceeeecc
Q 039652          211 KKPGRPIETYIFAMFDENGKKGPETERHWGLFAPNRQPRYQINF  254 (255)
Q Consensus       211 ~rp~~~i~~yiF~lfdE~~K~g~~~E~~wGlf~~d~~~ky~~~~  254 (255)
                      +||+..+++||||||||+||+| ++|||||||++||++||+|+|
T Consensus       270 ~~~~~~i~~f~FeaFDE~wK~G-~~E~~wGlf~~d~~~ky~l~f  312 (312)
T d2cyga1         270 RRPGKEIEAYIFEMFNENQKAG-GIEQNFGLFYPNKQPVYQISF  312 (312)
T ss_dssp             SSCSSCCCEEESCSBCCTTSCS-SGGGCCCSBCTTSCBSSCCCC
T ss_pred             CCCCCCccEEEEeEeCCCCCCC-CccCccccCCCCCCEecCCCC
Confidence            9999999999999999999986 689999999999999999987
>d1ghsa_ c.1.8.3 (A:) Plant beta-glucanases {Barley (Hordeum vulgare), 1,3-beta-glucanase [TaxId: 4513]} Back     information, alignment and structure
>d1aq0a_ c.1.8.3 (A:) Plant beta-glucanases {Barley (Hordeum vulgare), 1,3-1,4-beta-glucanase [TaxId: 4513]} Back     information, alignment and structure
>d1hjsa_ c.1.8.3 (A:) Beta-1,4-galactanase {Thielavia heterothallica, aka Myceliophthora thermophila [TaxId: 78579]} Back     information, alignment and structure
>d1uhva2 c.1.8.3 (A:14-359) Beta-D-xylosidase, catalytic domain {Thermoanaerobacterium saccharolyticum [TaxId: 28896]} Back     information, alignment and structure
>d1foba_ c.1.8.3 (A:) Beta-1,4-galactanase {Fungus (Aspergillus aculeatus) [TaxId: 5053]} Back     information, alignment and structure
>d1xyza_ c.1.8.3 (A:) Xylanase {Clostridium thermocellum, XynZ [TaxId: 1515]} Back     information, alignment and structure
>d1bhga3 c.1.8.3 (A:329-632) beta-Glucuronidase, domain 3 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1ur4a_ c.1.8.3 (A:) Beta-1,4-galactanase {Bacillus licheniformis [TaxId: 1402]} Back     information, alignment and structure
>d1vbua1 c.1.8.3 (A:517-840) Xylanase {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d1bqca_ c.1.8.3 (A:) Beta-mannanase {Thermomonospora fusca [TaxId: 2021]} Back     information, alignment and structure
>d1wkya2 c.1.8.3 (A:34-330) Beta-mannanase {Bacillus sp. JAMB-602 [TaxId: 244966]} Back     information, alignment and structure
>d1fh9a_ c.1.8.3 (A:) Xylanase A, catalytic core {Cellulomonas fimi [TaxId: 1708]} Back     information, alignment and structure