Citrus Sinensis ID: 039661

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------
LCTSGLPSDVTIEVGEMSFHLHKFPLLSRSGLLEKLIEEFCSGDRSVCVLKLDGIPGGAKSFELVIKFCYGVKIELTALNAVGLRCAAEYLHMTDDYGEGNLITQTEAFLNDVFSDWADAIKALETCQQVLPYAQDLHVVSRCIDSLAMKACADPNLFNWPASECNNTQKISIWNGISTATKPKSTGDDWWFGDVSSLSFPLYKLFIFALESRSMKPEKIAASLMCYANRYIPLMNRQSSFSSGTNYANPGASISSLSEAEQRALLEEIVDLLPNKREVTSTHLLLKLLRAAMVLHASPSCKENLEKRVGAQLDQASLVDLLIPNMGYIDTLYDIDCVQRILDHFMSVNLHSSHCIIEEGQPLSGSGSLTPMTMVATLMDGYLAEVAPDVNLKPLKFETLASVIPDYARPNDDGIYHAIDIYLKAHPWMTDCEKEQLCRLMDCQKLSLDACSHAAQNERLPLRVIVQVLFFEQLRLRTSISSWFFVDNVESSRNPSGNLGLPKIDGSRQMVPVQDRVKGDGGMKERVSELEKEYFSMKEALQKIVMTKKSWKTFAKRLVSKQKSQLCNPKESKRCSLKEQAFSGNGKQNHNNAEVVH
ccccccccEEEEEEccEEEEccHHHHHcccHHHHHHHHHccccccccEEEEcccccccHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHccHHHHHHHHHHHHHccccccHHcHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHcccccccccccccccccccccccccHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHcccccccccccccccccccEEHHHHHHHHHHHHHcccccccccccccccccccccccHHHHHHHHcHHHHHHHcccccccHHHHHHHHHHccccccccccHHHHHHHHHHHHcccccHHHHHHcccccccccccHHHHHHHHHcccccHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHcccccccccccccccccccccccccccccccccccccc
cccccccccEEEEEccEEEEEccccccccHHHHHHHHHcccccccccEEEEEccccccHHHHHHHHHHHccEEEEEcHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccHHHHHHHccHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHcccccccccccccccccccccccccccHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcHHHccccccccccccccHHHHHHHHHHHHHHHccccccccccccccccccccHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHcccHcccccccHHHHHHHHHHHcccccHHHHHHHHHHHcHHHccHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHcccccccccccccccccccccccccccccccccccEEcc
lctsglpsdvtievgemsfhlhkfpllsrsGLLEKLIEEFCSGDRSVCVLkldgipggakSFELVIKFCYGVKIELTALNAVGLRCAAEYLHmtddygegnlitQTEAFLNDVFSDWADAIKALETCQQVlpyaqdlhVVSRCIDSLamkacadpnlfnwpasecnntqkisiwngistatkpkstgddwwfgdvsslsfplYKLFIFALESRSMKPEKIAASLMCYANryiplmnrqssfssgtnyanpgasissLSEAEQRALLEEIVDLLPNKREVTSTHLLLKLLRAAMVLhaspsckeNLEKRVGAQLDQASLVdllipnmgyidtlydIDCVQRILDHFMSVnlhsshciieegqplsgsgsltpMTMVATLMDGYlaevapdvnlkplkfetlasvipdyarpnddgiYHAIDIYLkahpwmtdcEKEQLCRLMDCQKLSLDACSHaaqnerlpLRVIVQVLFFEQLRLRTSISSWFFVdnvessrnpsgnlglpkidgsrqmvpvqdrvkgdggmKERVSELEKEYFSMKEALQKIVMTKKSWKTFAKRLVSKQksqlcnpkeskrcslkeqafsgngkqnhnnaevvh
lctsglpsdVTIEVGEMSFHLHKFPLLSRSGLLEKLIEEFCSGDRSVCVLKLDGIPGGAKSFELVIKFCYGVKIELTALNAVGLRCAAEYLHMTDDYGEGNLITQTEAFLNDVFSDWADAIKALETCQQVLPYAQDLHVVSRCIDSLAMKACADPNLFNWPASECNNTQKISIWNGISTATKPKSTGDDWWFGDVSSLSFPLYKLFIFALESRSMKPEKIAASLMCYANRYIPLMNRQSSFSSGTNYANPGASISSLSEAEQRALLEEIVDLLPNKREVTSTHLLLKLLRAAMVLHASPSCKENLEKRVGAQLDQASLVDLLIPNMGYIDTLYDIDCVQRILDHFMSVNLHSSHCIIEEGQPLSGSGSLTPMTMVATLMDGYLAEVAPDVNLKPLKFETLASVIPDYARPNDDGIYHAIDIYLKAHPWMTDCEKEQLCRLMDCQKLSLDACSHAAQNERLPLRVIVQVLFFEQLRLRTSISSWFFVDNVEssrnpsgnlglpkidgsrqmvpvqdrvkgdggmKERVSELEKEYFSMKEALQKIVMTKKSWKTFAKRLvskqksqlcnpkeskrcslkeqafsgngkqnhnnaevvh
LCTSGLPSDVTIEVGEMSFHLHKFPLLSRSGLLEKLIEEFCSGDRSVCVLKLDGIPGGAKSFELVIKFCYGVKIELTALNAVGLRCAAEYLHMTDDYGEGNLITQTEAFLNDVFSDWADAIKALETCQQVLPYAQDLHVVSRCIDSLAMKACADPNLFNWPASECNNTQKISIWNGISTATKPKSTGDDWWFGDVSSLSFPLYKLFIFALESRSMKPEKIAASLMCYANRYIPLMNRQSSFSSGTNYANPGASISSLSEAEQRALLEEIVDLLPNKREVTSTHlllkllRAAMVLHASPSCKENLEKRVGAQLDQASLVDLLIPNMGYIDTLYDIDCVQRILDHFMSVNLHSSHCIIEEGQPLSGSGSLTPMTMVATLMDGYLAEVAPDVNLKPLKFETLASVIPDYARPNDDGIYHAIDIYLKAHPWMTDCEKEQLCRLMDCQKLSLDACSHAAQNERLPLRVIVQVLFFEQLRLRTSISSWFFVDNVESSRNPSGNLGLPKIDGSRQMVPVQDRVKGDGGMKERVSELEKEYFSMKEALQKIVMTKKSWKTFAKRLVSKQKSQLCNPKESKRCSLKEQAFSGNGKQNHNNAEVVH
*********VTIEVGEMSFHLHKFPLLSRSGLLEKLIEEFCSGDRSVCVLKLDGIPGGAKSFELVIKFCYGVKIELTALNAVGLRCAAEYLHMTDDYGEGNLITQTEAFLNDVFSDWADAIKALETCQQVLPYAQDLHVVSRCIDSLAMKACADPNLFNWPASECNNTQKISIWNGISTATKPKSTGDDWWFGDVSSLSFPLYKLFIFALESRSMKPEKIAASLMCYANRYIPLM*****************************LLEEIVDLLPNKREVTSTHLLLKLLRAAMVLHASPSCKENLEKRVGAQLDQASLVDLLIPNMGYIDTLYDIDCVQRILDHFMSVNLHSSHCIIEEGQPL***GSLTPMTMVATLMDGYLAEVAPDVNLKPLKFETLASVIPDYARPNDDGIYHAIDIYLKAHPWMTDCEKEQLCRLMDCQKLSLDACSHAAQNERLPLRVIVQVLFFEQLRLRTSISSWFFVDNV*********************************************F*MKEALQKIVMTKKSWKTFAKRL***************************************
LCTSGLPSDVTIEVGEMSFHLHKFPLLSRSGLLEKLI************LKLDGIPGGAKSFELVIKFCYGVKIELTALNAVGLRCAAEYLHMTDDYGEGNLITQTEAFLNDVFSDWADAIKALETCQQVLPYAQDLHVVSRCIDSLAMKACAD*************************************FGDVSSLSFPLYKLFIFALESRSMKPEKIAASLMCYANRYIPLMN***********************AEQRALLEEIVDLLPNKREVTSTHLLLKLLRAAMVLHASPSCKENLEKRVGAQLDQASLVDLLIPNMGYIDTLYDIDCVQRILDHFM****************************VATLMDGYLAEVAPDVNLKPLKFETLASVIPDYARPNDDGIYHAIDIYLKAHPWMTDCEKEQLCRLMDCQKLSLDACSHAAQNERLPLRVIVQVLFFEQL***************************************************************************************************************************
LCTSGLPSDVTIEVGEMSFHLHKFPLLSRSGLLEKLIEEFCSGDRSVCVLKLDGIPGGAKSFELVIKFCYGVKIELTALNAVGLRCAAEYLHMTDDYGEGNLITQTEAFLNDVFSDWADAIKALETCQQVLPYAQDLHVVSRCIDSLAMKACADPNLFNWPASECNNTQKISIWNGISTATKPKSTGDDWWFGDVSSLSFPLYKLFIFALESRSMKPEKIAASLMCYANRYIPLMNRQSSFSSGTNYANPGASISSLSEAEQRALLEEIVDLLPNKREVTSTHLLLKLLRAAMVLHASPSCKENLEKRVGAQLDQASLVDLLIPNMGYIDTLYDIDCVQRILDHFMSVNLHSSHCIIEEGQPLSGSGSLTPMTMVATLMDGYLAEVAPDVNLKPLKFETLASVIPDYARPNDDGIYHAIDIYLKAHPWMTDCEKEQLCRLMDCQKLSLDACSHAAQNERLPLRVIVQVLFFEQLRLRTSISSWFFVDNVESSRNPSGNLGLPKIDGSRQMVPVQDRVKGDGGMKERVSELEKEYFSMKEALQKIVMTKKSWKTFAKR*****************CSLKEQAFSGNGKQNHNNAEVVH
*C*SGLPSDVTIEVGEMSFHLHKFPLLSRSGLLEKLIEEFCSGDRSVCVLKLDGIPGGAKSFELVIKFCYGVKIELTALNAVGLRCAAEYLHMTDDYGEGNLITQTEAFLNDVFSDWADAIKALETCQQVLPYAQDLHVVSRCIDSLAMKACADPNLFNWPA**********************STGDDWWFGDVSSLSFPLYKLFIFALESRSMKPEKIAASLMCYANRYIPLM***********************EAEQRALLEEIVDLLPNKREVTSTHLLLKLLRAAMVLHASPSCKENLEKRVGAQLDQASLVDLLIPNMGYIDTLYDIDCVQRILDHFMSVNL******************LTPMTMVATLMDGYLAEVAPDVNLKPLKFETLASVIPDYARPNDDGIYHAIDIYLKAHPWMTDCEKEQLCRLMDCQKLSLDACSHAAQNERLPLRVIVQVLFFEQLRLRTSISSWF***********************************DGGMKERVSELEKEYFSMKEALQKIVMTKKSWKTF***LVS*************************************
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LCTSGLPSDVTIEVGEMSFHLHKFPLLSRSGLLEKLIEEFCSGDRSVCVLKLDGIPGGAKSFELVIKFCYGVKIELTALNAVGLRCAAEYLHMTDDYGEGNLITQTEAFLNDVFSDWADAIKALETCQQVLPYAQDLHVVSRCIDSLAMKACADPNLFNWPASECNNTQKISIWNGISTATKPKSTGDDWWFGDVSSLSFPLYKLFIFALESRSMKPEKIAASLMCYANRYIPLMNRQSSFSSGTNYANPGASISSLSEAEQRALLEEIVDLLPNKREVTSTHLLLKLLRAAMVLHASPSCKENLEKRVGAQLDQASLVDLLIPNMGYIDTLYDIDCVQRILDHFMSVNLHSSHCIIEEGQPLSGSGSLTPMTMVATLMDGYLAEVAPDVNLKPLKFETLASVIPDYARPNDDGIYHAIDIYLKAHPWMTDCEKEQLCRLMDCQKLSLDACSHAAQNERLPLRVIVQVLFFEQLRLRTSISSWFFVDNVESSRNPSGNLGLPKIDGSRQMVPVQDRVKGDGGMKERVSELEKEYFSMKEALQKIVMTKKSWKTFAKRLVSKQKSQLCNPKESKRCSLKEQAFSGNGKQNHNNAEVVH
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query597 2.2.26 [Sep-21-2011]
Q9LYW0592 BTB/POZ domain-containing yes no 0.921 0.929 0.608 0.0
Q9FNB3591 Putative BTB/POZ domain-c no no 0.904 0.913 0.559 1e-165
Q9S9Q9665 BTB/POZ domain-containing no no 0.991 0.890 0.483 1e-161
Q9FYC8651 BTB/POZ domain-containing no no 0.912 0.837 0.422 1e-125
Q94A73668 BTB/POZ domain-containing no no 0.932 0.833 0.383 1e-118
Q8LPQ3569 BTB/POZ domain-containing no no 0.902 0.947 0.392 1e-108
Q5KS50762 Coleoptile phototropism p no no 0.788 0.618 0.374 9e-99
Q9FKB6614 BTB/POZ domain-containing no no 0.860 0.837 0.391 3e-98
Q66GP0604 BTB/POZ domain-containing no no 0.765 0.756 0.392 2e-95
O80970634 BTB/POZ domain-containing no no 0.768 0.723 0.383 1e-89
>sp|Q9LYW0|Y5325_ARATH BTB/POZ domain-containing protein At5g03250 OS=Arabidopsis thaliana GN=At5g03250 PE=2 SV=1 Back     alignment and function desciption
 Score =  708 bits (1827), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 357/587 (60%), Positives = 440/587 (74%), Gaps = 37/587 (6%)

Query: 1   LCTSGLPSDVTIEVGEMSFHLHKFPLLSRSGLLEKLIEEFCSGDRSVCVLKLDGIPGGAK 60
           LCT+GL SDVTIEVG+M FHLHKFPLLSRSGLLE+LIEE  + D S CVL LD IPGG K
Sbjct: 21  LCTTGLVSDVTIEVGDMKFHLHKFPLLSRSGLLERLIEESSTDDGSGCVLSLDEIPGGGK 80

Query: 61  SFELVIKFCYGVKIELTALNAVGLRCAAEYLHMTDDYGEGNLITQTEAFLNDVFSDWADA 120
           +FELV KFCYGVKIELTA N V LRCAAEYL MTD+YGEGNL+  TE FLN+VF +W D+
Sbjct: 81  TFELVTKFCYGVKIELTAFNVVSLRCAAEYLEMTDNYGEGNLVGMTETFLNEVFGNWTDS 140

Query: 121 IKALETCQQVLPYAQDLHVVSRCIDSLAMKACADPNLFNWP------ASECNNTQKIS-I 173
           IKAL+TC++V+ YA+DLH++SRC+DSLA+KACADP+LFNWP      A+   NT+  S +
Sbjct: 141 IKALQTCEEVIDYAEDLHIISRCVDSLAVKACADPSLFNWPVGGGKNATSGQNTEDESHL 200

Query: 174 WNGISTATKP-KSTGDDWWFGDVSSLSFPLYKLFIFALESRSMKPEKIAASLMCYANRYI 232
           WNGIS + K  + TG+DWWF D S LS PL+K  I A+E+R MK E IA ++M Y  +++
Sbjct: 201 WNGISASGKMLQHTGEDWWFDDASFLSLPLFKRLITAIEARGMKLENIAMAVMYYTRKHV 260

Query: 233 PLMNRQSSFSSGT-NYANPGASISSLSEAEQRALLEEIVDLLPNKREVTSTHLLLKLLRA 291
           PLMNRQ +         NP       SE +Q+  LEEIV LLP+K+ V  T  LL+LL+ 
Sbjct: 261 PLMNRQVNMDEQVIETPNP-------SEEDQKTCLEEIVGLLPSKKGVNPTKFLLRLLQT 313

Query: 292 AMVLHASPSCKENLEKRVGAQLDQASLVDLLIPNMGYIDTLYDIDCVQRILDHFMS---- 347
           AMVLHAS S +ENLE+R+G QLDQA+LVDLLIPNMGY +TLYD++CV R+++ F+S    
Sbjct: 314 AMVLHASQSSRENLERRIGNQLDQAALVDLLIPNMGYSETLYDVECVLRMIEQFVSSTEQ 373

Query: 348 VNLHSSHCIIEEGQPLS-GSGSLTPMTMVATLMDGYLAEVAPDVNLKPLKFETLASVIPD 406
             +  S CIIEEG  +  G+  LTP T+VATL+DGYLAEVAPDVNLK  KFE +A+ IPD
Sbjct: 374 AGIVPSPCIIEEGHLVKDGADLLTPTTLVATLVDGYLAEVAPDVNLKLAKFEAIAAAIPD 433

Query: 407 YARPNDDGIYHAIDIYLKAHPWMTDCEKEQLCRLMDCQKLSLDACSHAAQNERLPLRVIV 466
           YARP DDG+YHAID+YLKAHPW+TD E+E +CRLM+CQKLSL+A +HAAQNERLPLRVIV
Sbjct: 434 YARPLDDGVYHAIDVYLKAHPWITDSEREHICRLMNCQKLSLEASTHAAQNERLPLRVIV 493

Query: 467 QVLFFEQLRLRTSISSWFFV-DNVESSRNPSG-NLGLPKIDGSRQMVPVQDRVKGDGGMK 524
           QVLFFEQLRLRTS+S WFFV +N+++  N  G N GL K  G                ++
Sbjct: 494 QVLFFEQLRLRTSVSGWFFVSENLDNPDNQHGANGGLLKPRGE--------------NVR 539

Query: 525 ERVSELEKEYFSMKEALQKIVMTKKSWKTFAKRLVSKQKSQLCNPKE 571
           ERVSELEKE  +MK+ L K+V TK+SWK F ++L  K+KS+ C PK+
Sbjct: 540 ERVSELEKECMNMKQELHKLVRTKRSWKNFTRKLNFKKKSECCKPKD 586
May act as a substrate-specific adapter of an E3 ubiquitin-protein ligase complex (CUL3-RBX1-BTB) which mediates the ubiquitination and subsequent proteasomal degradation of target proteins.
Arabidopsis thaliana (taxid: 3702)
>sp|Q9FNB3|Y5360_ARATH Putative BTB/POZ domain-containing protein At5g13600 OS=Arabidopsis thaliana GN=At5g13600 PE=3 SV=1 Back     alignment and function description
>sp|Q9S9Q9|Y1044_ARATH BTB/POZ domain-containing protein At1g30440 OS=Arabidopsis thaliana GN=At1g30440 PE=1 SV=2 Back     alignment and function description
>sp|Q9FYC8|Y3482_ARATH BTB/POZ domain-containing protein At3g44820 OS=Arabidopsis thaliana GN=At3g44820 PE=2 SV=2 Back     alignment and function description
>sp|Q94A73|Y5656_ARATH BTB/POZ domain-containing protein At5g66560 OS=Arabidopsis thaliana GN=At5g66560 PE=2 SV=2 Back     alignment and function description
>sp|Q8LPQ3|Y3084_ARATH BTB/POZ domain-containing protein At3g50840 OS=Arabidopsis thaliana GN=At3g50840 PE=2 SV=2 Back     alignment and function description
>sp|Q5KS50|NPH3_ORYSJ Coleoptile phototropism protein 1 OS=Oryza sativa subsp. japonica GN=CPT1 PE=2 SV=1 Back     alignment and function description
>sp|Q9FKB6|Y5880_ARATH BTB/POZ domain-containing protein At5g48800 OS=Arabidopsis thaliana GN=At5g48800 PE=1 SV=1 Back     alignment and function description
>sp|Q66GP0|Y5738_ARATH BTB/POZ domain-containing protein At5g67385 OS=Arabidopsis thaliana GN=At5g67385 PE=2 SV=2 Back     alignment and function description
>sp|O80970|NPY2_ARATH BTB/POZ domain-containing protein NPY2 OS=Arabidopsis thaliana GN=NPY2 PE=2 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query597
225439994624 PREDICTED: BTB/POZ domain-containing pro 0.993 0.950 0.662 0.0
255556994622 protein binding protein, putative [Ricin 0.994 0.954 0.662 0.0
224138706577 predicted protein [Populus trichocarpa] 0.914 0.946 0.682 0.0
449440107621 PREDICTED: BTB/POZ domain-containing pro 0.979 0.942 0.641 0.0
449513629621 PREDICTED: LOW QUALITY PROTEIN: BTB/POZ 0.979 0.942 0.641 0.0
225449030619 PREDICTED: BTB/POZ domain-containing pro 0.986 0.951 0.613 0.0
356546520618 PREDICTED: BTB/POZ domain-containing pro 0.964 0.932 0.635 0.0
255587120630 protein binding protein, putative [Ricin 0.993 0.941 0.611 0.0
357447197607 BTB/POZ domain-containing protein [Medic 0.938 0.922 0.647 0.0
297741606550 unnamed protein product [Vitis vinifera] 0.871 0.945 0.602 0.0
>gi|225439994|ref|XP_002276233.1| PREDICTED: BTB/POZ domain-containing protein At5g03250 [Vitis vinifera] Back     alignment and taxonomy information
 Score =  824 bits (2128), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 400/604 (66%), Positives = 480/604 (79%), Gaps = 11/604 (1%)

Query: 1   LCTSGLPSDVTIEVGEMSFHLHKFPLLSRSGLLEKLIEEFCSGDRSVCVLKLDGIPGGAK 60
            CT+GLPSDV +E+GEMSF+LHKFPLLSRSGLLEKLIE   + D S CVL+L  +PGGAK
Sbjct: 21  FCTTGLPSDVAVEIGEMSFNLHKFPLLSRSGLLEKLIENCSNEDGSHCVLQLHELPGGAK 80

Query: 61  SFELVIKFCYGVKIELTALNAVGLRCAAEYLHMTDDYGEGNLITQTEAFLNDVFSDWADA 120
           +FELV KFCYGVKIELT+LN V LRCAAEYL M ++YGEGNLI QTE FLN+VFS+W D+
Sbjct: 81  AFELVTKFCYGVKIELTSLNIVSLRCAAEYLQMNENYGEGNLIAQTEGFLNEVFSNWVDS 140

Query: 121 IKALETCQQVLPYAQDLHVVSRCIDSLAMKACADPNLFNWPASECNNTQK---ISIWNGI 177
           IKAL TC+ VLPYA+DLH+VSRCIDSLAMKACADP LF WP S C N Q    + +WNGI
Sbjct: 141 IKALGTCE-VLPYAEDLHIVSRCIDSLAMKACADPTLFGWPVSGCTNVQSPAGVVLWNGI 199

Query: 178 STATKPKSTGDDWWFGDVSSLSFPLYKLFIFALESRSMKPEKIAASLMCYANRYIPLMNR 237
           ST  KP+S  +DWW+GDVS LS P YK  + A+E R MKPE++A SL+ YA RY+PLMNR
Sbjct: 200 STVNKPQSVREDWWYGDVSFLSLPFYKRMMQAVELRGMKPERVAGSLIFYAKRYLPLMNR 259

Query: 238 QSSFSSGTNYANPGASISSLSEAEQRALLEEIVDLLPNKREVTSTHLLLKLLRAAMVLHA 297
           QSSF   TN+ NPG +I + SEA+QRALLE+IVDLLPN++ VTST  LL+LLR AM+LH 
Sbjct: 260 QSSFKD-TNHVNPGTTIPTPSEADQRALLEDIVDLLPNQKGVTSTKFLLRLLRTAMILHT 318

Query: 298 SPSCKENLEKRVGAQLDQASLVDLLIPNMGY-IDTLYDIDCVQRILDHFMSVN----LHS 352
           S  C+ENLE+RVGAQLDQA L DLLIPNMGY ++TLYDIDCVQRILDHFMSV       +
Sbjct: 319 SSLCRENLERRVGAQLDQAVLEDLLIPNMGYSVETLYDIDCVQRILDHFMSVENTAVATA 378

Query: 353 SHCIIEEGQPLSGSGSLTPMTMVATLMDGYLAEVAPDVNLKPLKFETLASVIPDYARPND 412
           S CI+EEG+ + G   LTP+ +VA L+DGYLAEVAPDVNLK  KF++LA+ +PDYARP +
Sbjct: 379 SPCIVEEGKLMDGPDFLTPVMLVANLVDGYLAEVAPDVNLKLPKFQSLAAAVPDYARPVN 438

Query: 413 DGIYHAIDIYLKAHPWMTDCEKEQLCRLMDCQKLSLDACSHAAQNERLPLRVIVQVLFFE 472
           D IYHAID+YLKAHPW+ D E+EQ+CRLM+CQKLSL+A +HAAQNERLPLRVIVQVLFFE
Sbjct: 439 DSIYHAIDLYLKAHPWLIDSEREQICRLMNCQKLSLEASTHAAQNERLPLRVIVQVLFFE 498

Query: 473 QLRLRTSISSWFFV-DNVESSRNPSGNLGLPKIDGSRQMVPVQDRVKGDGGMKERVSELE 531
           QLRLRT++S WFFV DN+ +S++P+ NLG+PK DGS Q+ P QD   G   M+ERV ELE
Sbjct: 499 QLRLRTTVSGWFFVSDNLANSQDPNDNLGIPKTDGSHQVDPEQDHGAGVDDMRERVLELE 558

Query: 532 KEYFSMKEALQKIVMTKKSWKTFAKRLVSKQKSQLCNPKESKRCSLKEQAFSGNGKQNHN 591
           KE  SMK+ +QK+V  K+SW    K LV +QKSQ CN K+S+ C +K    S NG QNH 
Sbjct: 559 KECLSMKQEIQKLVKMKRSWNIIPKMLVFRQKSQRCNSKKSRPCDVKTPLSSSNGHQNHE 618

Query: 592 NAEV 595
           + E+
Sbjct: 619 HGEL 622

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|255556994|ref|XP_002519530.1| protein binding protein, putative [Ricinus communis] gi|223541393|gb|EEF42944.1| protein binding protein, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|224138706|ref|XP_002322881.1| predicted protein [Populus trichocarpa] gi|222867511|gb|EEF04642.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|449440107|ref|XP_004137826.1| PREDICTED: BTB/POZ domain-containing protein At5g03250-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|449513629|ref|XP_004164379.1| PREDICTED: LOW QUALITY PROTEIN: BTB/POZ domain-containing protein At5g03250-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|225449030|ref|XP_002274032.1| PREDICTED: BTB/POZ domain-containing protein At5g03250 [Vitis vinifera] Back     alignment and taxonomy information
>gi|356546520|ref|XP_003541674.1| PREDICTED: BTB/POZ domain-containing protein At5g03250-like [Glycine max] Back     alignment and taxonomy information
>gi|255587120|ref|XP_002534145.1| protein binding protein, putative [Ricinus communis] gi|223525791|gb|EEF28238.1| protein binding protein, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|357447197|ref|XP_003593874.1| BTB/POZ domain-containing protein [Medicago truncatula] gi|355482922|gb|AES64125.1| BTB/POZ domain-containing protein [Medicago truncatula] Back     alignment and taxonomy information
>gi|297741606|emb|CBI32738.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query597
TAIR|locus:2143558592 AT5G03250 [Arabidopsis thalian 0.921 0.929 0.603 7.8e-181
TAIR|locus:2173204591 AT5G13600 [Arabidopsis thalian 0.904 0.913 0.554 3.1e-147
TAIR|locus:2028160665 AT1G30440 [Arabidopsis thalian 0.938 0.842 0.509 8.1e-147
TAIR|locus:2082132651 AT3G44820 [Arabidopsis thalian 0.927 0.850 0.408 1.2e-113
TAIR|locus:2154920668 AT5G66560 [Arabidopsis thalian 0.701 0.627 0.440 1.9e-112
TAIR|locus:2173418 746 NPH3 "NON-PHOTOTROPIC HYPOCOTY 0.256 0.205 0.532 2.3e-92
TAIR|locus:2156524614 AT5G48800 [Arabidopsis thalian 0.525 0.511 0.404 2.7e-92
TAIR|locus:2007564634 AT1G03010 [Arabidopsis thalian 0.901 0.848 0.366 1.7e-82
TAIR|locus:2200286631 AT1G67900 [Arabidopsis thalian 0.557 0.527 0.346 2.5e-81
TAIR|locus:2046961634 NPY2 "NAKED PINS IN YUC MUTANT 0.932 0.878 0.345 1.1e-80
TAIR|locus:2143558 AT5G03250 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1755 (622.8 bits), Expect = 7.8e-181, P = 7.8e-181
 Identities = 354/587 (60%), Positives = 438/587 (74%)

Query:     1 LCTSGLPSDVTIEVGEMSFHLHKFPLLSRSGLLEKLIEEFCSGDRSVCVLKLDGIPGGAK 60
             LCT+GL SDVTIEVG+M FHLHKFPLLSRSGLLE+LIEE  + D S CVL LD IPGG K
Sbjct:    21 LCTTGLVSDVTIEVGDMKFHLHKFPLLSRSGLLERLIEESSTDDGSGCVLSLDEIPGGGK 80

Query:    61 SFELVIKFCYGVKIELTALNAVGLRCAAEYLHMTDDYGEGNLITQTEAFLNDVFSDWADA 120
             +FELV KFCYGVKIELTA N V LRCAAEYL MTD+YGEGNL+  TE FLN+VF +W D+
Sbjct:    81 TFELVTKFCYGVKIELTAFNVVSLRCAAEYLEMTDNYGEGNLVGMTETFLNEVFGNWTDS 140

Query:   121 IKALETCQQVLPYAQDLHVVSRCIDSLAMKACADPNLFNWP------ASECNNTQKIS-I 173
             IKAL+TC++V+ YA+DLH++SRC+DSLA+KACADP+LFNWP      A+   NT+  S +
Sbjct:   141 IKALQTCEEVIDYAEDLHIISRCVDSLAVKACADPSLFNWPVGGGKNATSGQNTEDESHL 200

Query:   174 WNGISTATKP-KSTGDDWWFGDVSSLSFPLYKLFIFALESRSMKPEKIAASLMCYANRYI 232
             WNGIS + K  + TG+DWWF D S LS PL+K  I A+E+R MK E IA ++M Y  +++
Sbjct:   201 WNGISASGKMLQHTGEDWWFDDASFLSLPLFKRLITAIEARGMKLENIAMAVMYYTRKHV 260

Query:   233 PLMNRQSSFSSGT-NYANPGASISSLSEAEQRALLEEIVDLLPNKREVTSTHXXXXXXRA 291
             PLMNRQ +         NP       SE +Q+  LEEIV LLP+K+ V  T       + 
Sbjct:   261 PLMNRQVNMDEQVIETPNP-------SEEDQKTCLEEIVGLLPSKKGVNPTKFLLRLLQT 313

Query:   292 AMVLHASPSCKENLEKRVGAQLDQASLVDLLIPNMGYIDTLYDIDCVQRILDHFMS---- 347
             AMVLHAS S +ENLE+R+G QLDQA+LVDLLIPNMGY +TLYD++CV R+++ F+S    
Sbjct:   314 AMVLHASQSSRENLERRIGNQLDQAALVDLLIPNMGYSETLYDVECVLRMIEQFVSSTEQ 373

Query:   348 VNLHSSHCIIEEGQPLS-GSGSLTPMTMVATLMDGYLAEVAPDVNLKPLKFETLASVIPD 406
               +  S CIIEEG  +  G+  LTP T+VATL+DGYLAEVAPDVNLK  KFE +A+ IPD
Sbjct:   374 AGIVPSPCIIEEGHLVKDGADLLTPTTLVATLVDGYLAEVAPDVNLKLAKFEAIAAAIPD 433

Query:   407 YARPNDDGIYHAIDIYLKAHPWMTDCEKEQLCRLMDCQKLSLDACSHAAQNERLPLRVIV 466
             YARP DDG+YHAID+YLKAHPW+TD E+E +CRLM+CQKLSL+A +HAAQNERLPLRVIV
Sbjct:   434 YARPLDDGVYHAIDVYLKAHPWITDSEREHICRLMNCQKLSLEASTHAAQNERLPLRVIV 493

Query:   467 QVLFFEQLRLRTSISSWFFV-DNVESSRNPSG-NLGLPKIDGSRQMVPVQDRVKGDGGMK 524
             QVLFFEQLRLRTS+S WFFV +N+++  N  G N GL K        P     +G+  ++
Sbjct:   494 QVLFFEQLRLRTSVSGWFFVSENLDNPDNQHGANGGLLK--------P-----RGEN-VR 539

Query:   525 ERVSELEKEYFSMKEALQKIVMTKKSWKTFAKRLVSKQKSQLCNPKE 571
             ERVSELEKE  +MK+ L K+V TK+SWK F ++L  K+KS+ C PK+
Sbjct:   540 ERVSELEKECMNMKQELHKLVRTKRSWKNFTRKLNFKKKSECCKPKD 586
GO:0004871 "signal transducer activity" evidence=IEA;ISS
GO:0005886 "plasma membrane" evidence=ISM
GO:0009416 "response to light stimulus" evidence=IEA;ISS
TAIR|locus:2173204 AT5G13600 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2028160 AT1G30440 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2082132 AT3G44820 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2154920 AT5G66560 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2173418 NPH3 "NON-PHOTOTROPIC HYPOCOTYL 3" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2156524 AT5G48800 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2007564 AT1G03010 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2200286 AT1G67900 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2046961 NPY2 "NAKED PINS IN YUC MUTANTS 2" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q9LYW0Y5325_ARATHNo assigned EC number0.60810.92120.9290yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
GSVIVG00023199001
SubName- Full=Chromosome chr8 scaffold_29, whole genome shotgun sequence; (624 aa)
(Vitis vinifera)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query597
pfam03000249 pfam03000, NPH3, NPH3 family 1e-116
pfam00651101 pfam00651, BTB, BTB/POZ domain 4e-09
smart0022597 smart00225, BTB, Broad-Complex, Tramtrack and Bric 2e-08
>gnl|CDD|217312 pfam03000, NPH3, NPH3 family Back     alignment and domain information 
 Score =  344 bits (886), Expect = e-116
 Identities = 135/264 (51%), Positives = 176/264 (66%), Gaps = 17/264 (6%)

Query: 189 DWWFGDVSSLSFPLYKLFIFALESRSMKPEKIAASLMCYANRYIPLMNRQSSFSSGTNYA 248
           DWWF D+S LS  L+K  I A++SR +KPE I  +LM YA +++P ++R           
Sbjct: 2   DWWFEDLSELSIDLFKRVITAMKSRGVKPEVIGEALMHYAKKWLPGLSR----------- 50

Query: 249 NPGASISSLSEAEQRALLEEIVDLLPNKREVTSTHLLLKLLRAAMVLHASPSCKENLEKR 308
               S    SE EQRALLE IV LLP+++   S   L KLLRAA++L AS SC+E LE+R
Sbjct: 51  --SGSSEEDSEEEQRALLETIVSLLPSEKGSVSCSFLFKLLRAAIILGASESCREELERR 108

Query: 309 VGAQLDQASLVDLLIPNMGYI-DTLYDIDCVQRILDHFMSVNLHSSHCIIEEGQPLSGSG 367
           +G QLDQA+L DLLIP+     +TLYD+D VQRIL+ F+S    ++    +E      S 
Sbjct: 109 IGLQLDQATLDDLLIPSGYSGEETLYDVDLVQRILEVFLS-RDAATQSSDDEDSE--ASP 165

Query: 368 SLTPMTMVATLMDGYLAEVAPDVNLKPLKFETLASVIPDYARPNDDGIYHAIDIYLKAHP 427
           S + +  VA L+DGYLAE+APD NLK  KF  LA  +PD ARP+ DG+Y AIDIYLKAHP
Sbjct: 166 SSSSLLKVAKLVDGYLAEIAPDPNLKLSKFIALAEAVPDSARPSHDGLYRAIDIYLKAHP 225

Query: 428 WMTDCEKEQLCRLMDCQKLSLDAC 451
            +++ EK++LCRLMDCQKLS +AC
Sbjct: 226 NLSESEKKRLCRLMDCQKLSQEAC 249

Phototropism of Arabidopsis thaliana seedlings in response to a blue light source is initiated by nonphototropic hypocotyl 1 (NPH1), a light-activated serine-threonine protein kinase. Mutations in NPH3 disrupt early signaling occurring downstream of the NPH1 photoreceptor. The NPH3 gene encodes a NPH1-interacting protein. NPH3 is a member of a large protein family, apparently specific to higher plants, and may function as an adapter or scaffold protein to bring together the enzymatic components of a NPH1-activated phosphorelay. Length = 249
>gnl|CDD|216043 pfam00651, BTB, BTB/POZ domain Back     alignment and domain information
>gnl|CDD|197585 smart00225, BTB, Broad-Complex, Tramtrack and Bric a brac Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 597
PF03000258 NPH3: NPH3 family; InterPro: IPR004249 The RPT2 pr 100.0
KOG4441571 consensus Proteins containing BTB/POZ and Kelch do 99.92
PHA02713557 hypothetical protein; Provisional 99.91
PHA02790480 Kelch-like protein; Provisional 99.88
PHA03098534 kelch-like protein; Provisional 99.87
PF00651111 BTB: BTB/POZ domain; InterPro: IPR013069 The BTB ( 99.66
smart0022590 BTB Broad-Complex, Tramtrack and Bric a brac. Doma 99.58
KOG2075521 consensus Topoisomerase TOP1-interacting protein B 99.25
KOG4350620 consensus Uncharacterized conserved protein, conta 99.02
KOG4591280 consensus Uncharacterized conserved protein, conta 98.68
KOG4682488 consensus Uncharacterized conserved protein, conta 98.4
KOG07831267 consensus Uncharacterized conserved protein, conta 98.19
KOG0783 1267 consensus Uncharacterized conserved protein, conta 98.16
PF11822317 DUF3342: Domain of unknown function (DUF3342); Int 97.79
smart00512104 Skp1 Found in Skp1 protein family. Family of Skp1 97.19
PF0221494 BTB_2: BTB/POZ domain; InterPro: IPR003131 Potassi 96.68
KOG2716230 consensus Polymerase delta-interacting protein PDI 96.16
KOG3473112 consensus RNA polymerase II transcription elongati 95.32
PF0393162 Skp1_POZ: Skp1 family, tetramerisation domain; Int 94.89
KOG2838401 consensus Uncharacterized conserved protein, conta 93.17
KOG1724162 consensus SCF ubiquitin ligase, Skp1 component [Po 92.96
KOG2838401 consensus Uncharacterized conserved protein, conta 89.59
KOG0511516 consensus Ankyrin repeat protein [General function 86.3
>PF03000 NPH3: NPH3 family; InterPro: IPR004249 The RPT2 protein is a signal transducer of the phototropic response in Arabidopsis thaliana Back     alignment and domain information 
Probab=100.00  E-value=3.7e-89  Score=692.76  Aligned_cols=257  Identities=53%  Similarity=0.839  Sum_probs=227.1

Q ss_pred             CCccccccccCChHHHHHHHHHHHhCCCChHHHHHHHHHHHHhhccccccCCCCCCCCCCCCCCCCCCchhHHHHHHHHH
Q 039661          188 DDWWFGDVSSLSFPLYKLFIFALESRSMKPEKIAASLMCYANRYIPLMNRQSSFSSGTNYANPGASISSLSEAEQRALLE  267 (597)
Q Consensus       188 ~dWW~EDl~~L~l~lf~rvI~am~~~g~~~e~I~~aL~~Ya~k~lp~l~r~~~~~~~~~~~~~~~~~~~~~~~~qr~lLE  267 (597)
                      +||||||++.|++++|+|||.+|+++|+++++|+++|++||+||+|++++.....      ............+||.+||
T Consensus         1 ~dWW~eDl~~L~id~f~rvi~a~~~~~~~~~~I~~~l~~Ya~k~l~~~~~~~~~~------~~~~~~~~~~~~~~r~llE   74 (258)
T PF03000_consen    1 KDWWFEDLSELSIDLFKRVISAMKSKGMKPEVIGEALMHYAKKWLPGLSRSSSGS------SSSAESSTSSENEQRELLE   74 (258)
T ss_pred             CCccHHHHHhCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCcccccccc------cccccccchhHHHHHHHHH
Confidence            4899999999999999999999999999999999999999999999985542111      1122334567889999999


Q ss_pred             HHHHhcCCCCCcccHHHHHHHHHHHHhhCCChHHHHHHHHHHHhhhccccccccccccCCCC-CccchHHHHHHHHHHHH
Q 039661          268 EIVDLLPNKREVTSTHLLLKLLRAAMVLHASPSCKENLEKRVGAQLDQASLVDLLIPNMGYI-DTLYDIDCVQRILDHFM  346 (597)
Q Consensus       268 ~Iv~lLp~~~~~vs~~fLf~LLR~a~~l~as~~cr~~LE~rIg~qLd~AtldDLLiPs~~~~-~tlyDvd~V~ril~~Fl  346 (597)
                      +||+|||.+++++||+|||+|||+|+++++|.+||.+||+|||+|||||||||||||+.+.. +|+||||+|+|||++||
T Consensus        75 tiV~lLP~e~~svsc~FL~~LLr~A~~l~as~~cr~~Le~rIg~qLd~AtldDLLIP~~~~~~~t~yDVd~V~riv~~Fl  154 (258)
T PF03000_consen   75 TIVSLLPPEKGSVSCSFLFRLLRAAIMLGASSACRNELERRIGSQLDQATLDDLLIPSSPSGEDTLYDVDLVQRIVEHFL  154 (258)
T ss_pred             HHHHhCCCCCCcccHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHhhhccHHHhcccCCCCcccchhhHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999993333 69999999999999999


Q ss_pred             hcccCCCcccccCCCCCCCCCCChhHHHHHHHHHhhhhhhcCCCCCChhhHHHHHHhcCCCCCCCCchhHHHHHHHHHhC
Q 039661          347 SVNLHSSHCIIEEGQPLSGSGSLTPMTMVATLMDGYLAEVAPDVNLKPLKFETLASVIPDYARPNDDGIYHAIDIYLKAH  426 (597)
Q Consensus       347 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~VakLvD~YLaEiA~D~nL~~~kF~~Lae~lP~~aR~~~DgLYrAIDiYLKaH  426 (597)
                      .+++........+ ....+.++.+++.+||||||+||+|||+|+||+|+||++|||++|++||++|||||||||||||+|
T Consensus       155 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~VakLvD~YLaEiA~D~~L~~~kF~~Lae~lP~~aR~~hD~LYrAID~YLk~H  233 (258)
T PF03000_consen  155 SQEEEAGEEEESE-SESGSSPSSSSLVKVAKLVDGYLAEIAPDPNLKPSKFVALAEALPDSARPSHDGLYRAIDIYLKAH  233 (258)
T ss_pred             hcccccccccccc-cccccCCChHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHCCHhhhhccchHHHHHHHHHHHc
Confidence            9865321111110 001144678899999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCHHHHhhhhcccccCCCCHHHh
Q 039661          427 PWMTDCEKEQLCRLMDCQKLSLDAC  451 (597)
Q Consensus       427 p~lse~Er~~lC~~mdcqKLS~EAc  451 (597)
                      |+||++||++||++|||||||+|||
T Consensus       234 p~ls~~Er~~lC~~ldc~KLS~EAC  258 (258)
T PF03000_consen  234 PGLSEEERKRLCRLLDCQKLSPEAC  258 (258)
T ss_pred             ccCCHHHHHHHHhhCCcccCCcccC
Confidence            9999999999999999999999999

The RPT2 gene is light inducible; encodes a novel protein with putative phosphorylation sites, a nuclear localization signal, a BTB/POZ domain (IPR000210 from INTERPRO), and a coiled-coil domain. RPT2 belongs to a large gene family that includes the recently isolated NPH3 gene []. The NPH3 protein is a NPH1 photoreceptor-interacting protein that is essential for phototropism. Phototropism of A. thaliana seedlings in response to a blue light source is initiated by nonphototropic hypocotyl 1 (NPH1), a light-activated serine-threonine protein kinase []. NPH3 is a member of a large protein family, apparently specific to higher plants, and may function as an adapter or scaffold protein to bring together the enzymatic components of a NPH1-activated phosphorelay []. Many of the proteins in this group also contain the BTB/POZ domain (IPR000210 from INTERPRO) at the N-terminal.; GO: 0004871 signal transducer activity, 0009416 response to light stimulus
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only] Back     alignment and domain information
>PHA02713 hypothetical protein; Provisional Back     alignment and domain information
>PHA02790 Kelch-like protein; Provisional Back     alignment and domain information
>PHA03098 kelch-like protein; Provisional Back     alignment and domain information
>PF00651 BTB: BTB/POZ domain; InterPro: IPR013069 The BTB (for BR-C, ttk and bab) [] or POZ (for Pox virus and Zinc finger) [] domain is present near the N terminus of a fraction of zinc finger (IPR007087 from INTERPRO) proteins and in proteins that contain the IPR006652 from INTERPRO motif such as Kelch and a family of pox virus proteins Back     alignment and domain information
>smart00225 BTB Broad-Complex, Tramtrack and Bric a brac Back     alignment and domain information
>KOG2075 consensus Topoisomerase TOP1-interacting protein BTBD1 [Function unknown] Back     alignment and domain information
>KOG4350 consensus Uncharacterized conserved protein, contains BTB/POZ domain [General function prediction only] Back     alignment and domain information
>KOG4591 consensus Uncharacterized conserved protein, contains BTB/POZ domain [General function prediction only] Back     alignment and domain information
>KOG4682 consensus Uncharacterized conserved protein, contains BTB/POZ domain [General function prediction only] Back     alignment and domain information
>KOG0783 consensus Uncharacterized conserved protein, contains ankyrin and BTB/POZ domains [Function unknown] Back     alignment and domain information
>KOG0783 consensus Uncharacterized conserved protein, contains ankyrin and BTB/POZ domains [Function unknown] Back     alignment and domain information
>PF11822 DUF3342: Domain of unknown function (DUF3342); InterPro: IPR021777 This family of proteins are functionally uncharacterised Back     alignment and domain information
>smart00512 Skp1 Found in Skp1 protein family Back     alignment and domain information
>PF02214 BTB_2: BTB/POZ domain; InterPro: IPR003131 Potassium channels are the most diverse group of the ion channel family [, ] Back     alignment and domain information
>KOG2716 consensus Polymerase delta-interacting protein PDIP1 and related proteins, contain BTB/POZ domain [Inorganic ion transport and metabolism] Back     alignment and domain information
>KOG3473 consensus RNA polymerase II transcription elongation factor Elongin/SIII, subunit elongin C [Transcription] Back     alignment and domain information
>PF03931 Skp1_POZ: Skp1 family, tetramerisation domain; InterPro: IPR016073 SKP1 (together with SKP2) was identified as an essential component of the cyclin A-CDK2 S phase kinase complex [] Back     alignment and domain information
>KOG2838 consensus Uncharacterized conserved protein, contains BTB/POZ domain [General function prediction only] Back     alignment and domain information
>KOG1724 consensus SCF ubiquitin ligase, Skp1 component [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG2838 consensus Uncharacterized conserved protein, contains BTB/POZ domain [General function prediction only] Back     alignment and domain information
>KOG0511 consensus Ankyrin repeat protein [General function prediction only] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query597
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 5e-11
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 3e-10
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 6e-10
2vpk_A116 Myoneurin; transcription regulation, transcription 2e-10
2q81_A119 MIZ-1 protein; BTB/POZ domain, transcription; HET: 4e-09
3ga1_A129 Nucleus accumbens-associated protein 1; BTB/POZ do 5e-09
3b84_A119 Zinc finger and BTB domain-containing protein 48; 8e-09
1buo_A121 POZ domain, protein (promyelocytic leukemia zinc f 1e-08
3ohu_A125 Transcription regulator protein BACH2; BTB/POZ dom 2e-08
2yy9_A135 Zinc finger and BTB domain-containing protein 48; 3e-08
2if5_A120 Zinc finger and BTB domain-containing protein 7A; 4e-08
1r29_A127 B-cell lymphoma 6 protein; BTB domain, transcripti 6e-08
3fkc_A116 Transcriptional regulator kaiso; zinc finger and B 1e-07
2ihc_A124 Transcription regulator protein BACH1; BRIC-A-BRAC 3e-07
2z8h_A138 Transcription regulator protein BACH1; BTB, POZ, d 5e-07
3m5b_A119 Zinc finger and BTB domain-containing protein 32; 2e-06
2ppi_A144 Gigaxonin; BTB domain, protein degradation, struct 7e-05
4eoz_A145 Speckle-type POZ protein; E3 ubiquitin ligase, nuc 7e-04
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
 Score = 64.9 bits (157), Expect = 5e-11
 Identities = 89/586 (15%), Positives = 179/586 (30%), Gaps = 171/586 (29%)

Query: 7   PSDVTIEVGEMSFHLH----KFP--LLSRSGLLEKLIEEFCSGDRSVCVLKLDGIPGGAK 60
           PS +T    E    L+     F    +SR     KL +      R    + +DG+ G  K
Sbjct: 105 PSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLE-LRPAKNVLIDGVLGSGK 163

Query: 61  SFELVIKFCYGVKIELTALNAVGLRCAAEYLHMTDDYGEGNLITQTEAFLNDVFSDWA-- 118
           ++ + +  C   K++      +       +L++ +      ++   +  L  +  +W   
Sbjct: 164 TW-VALDVCLSYKVQCKMDFKI------FWLNLKNCNSPETVLEMLQKLLYQIDPNWTSR 216

Query: 119 ------------DAIKALETCQQVLPYAQDLHVVSRCIDSLAMKACADPNLFNWPASECN 166
                            L    +  PY   L V+    ++ A  A      FN     C 
Sbjct: 217 SDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNA------FNL---SCK 267

Query: 167 ---NTQKISIWNGISTATKPKSTGDD--WWFGDVSSLSFPLYKLFIFALESRSMK-PEK- 219
               T+   + + +S AT    + D            S     L +  L+ R    P + 
Sbjct: 268 ILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKS-----LLLKYLDCRPQDLPREV 322

Query: 220 ----------IAASLMCYANR-----YIPLMNRQSSFSSGTNYANPGASISSLSEAEQRA 264
                     IA S+           ++      +   S         S++ L  AE R 
Sbjct: 323 LTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIES---------SLNVLEPAEYRK 373

Query: 265 LLEEIVDLLPNKREVTSTHLLLKLLRAAMVLHASPSCKENLEKRVGAQLDQASLVDLLIP 324
           + + +  + P    + +   LL L+   +         ++    V  +L + SLV+    
Sbjct: 374 MFDRLS-VFPPSAHIPTI--LLSLIWFDV--------IKSDVMVVVNKLHKYSLVEKQPK 422

Query: 325 NMGYIDTLYDIDCVQRI-LDHFMSVNLHSSHCIIEEGQPLSGSGSLTPMTMVATLMDGYL 383
                 ++  I    ++ L++     LH                         +++D Y 
Sbjct: 423 ESTI--SIPSIYLELKVKLEN--EYALH------------------------RSIVDHY- 453

Query: 384 AEVAPDVNLKPLKFETLASVIPDYARPNDDG-IYHAIDIYLKAHPWMTDCEKEQLCRLMD 442
                  N+ P  F++      D   P  D   Y     ++  H  + + E  +   L  
Sbjct: 454 -------NI-PKTFDS-----DDLIPPYLDQYFYS----HIGHH--LKNIEHPERMTLF- 493

Query: 443 CQKLSLDACSHAAQNERLPLRVIVQVLFFEQLRLRTSISSWFFVDNVESSRNPSGNLGLP 502
            + + LD             R      F EQ ++R   ++W       ++     N  L 
Sbjct: 494 -RMVFLD------------FR------FLEQ-KIRHDSTAW-------NASGSILNT-LQ 525

Query: 503 KIDGSRQMVPVQDRVKGDGGMKERVSELEKEYFSMKEALQKIVMTK 548
           ++   +  +        D   +  V+ +    F  K   + ++ +K
Sbjct: 526 QLKFYKPYI-----CDNDPKYERLVNAILD--FLPKIE-ENLICSK 563
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>2vpk_A Myoneurin; transcription regulation, transcription, metal-binding, alternative splicing, zinc, nucleus, BTB domain, zinc-finger, DNA-binding; 2.00A {Homo sapiens} Length = 116 Back     alignment and structure
>2q81_A MIZ-1 protein; BTB/POZ domain, transcription; HET: PG4; 2.10A {Homo sapiens} PDB: 3m52_A Length = 119 Back     alignment and structure
>3ga1_A Nucleus accumbens-associated protein 1; BTB/POZ domain, phosphoprotein, repressor, transcri transcription regulation; 2.10A {Homo sapiens} Length = 129 Back     alignment and structure
>3b84_A Zinc finger and BTB domain-containing protein 48; krueppel related zinc finger protein 3, HKR3, ZBTB48, Z finger, oncogene; 1.74A {Homo sapiens} Length = 119 Back     alignment and structure
>1buo_A POZ domain, protein (promyelocytic leukemia zinc finger prote; protein-protein interaction domain, transcriptional represso finger protein; 1.90A {Homo sapiens} SCOP: d.42.1.1 PDB: 1cs3_A Length = 121 Back     alignment and structure
>3ohu_A Transcription regulator protein BACH2; BTB/POZ domain; 2.10A {Homo sapiens} PDB: 3ohv_A Length = 125 Back     alignment and structure
>2yy9_A Zinc finger and BTB domain-containing protein 48; mouse, HKR3, structural genomics, NPPSFA; 2.60A {Mus musculus} Length = 135 Back     alignment and structure
>2if5_A Zinc finger and BTB domain-containing protein 7A; POZ domain, POK, proto oncogene, transcription F transcription; 2.00A {Homo sapiens} PDB: 2nn2_A Length = 120 Back     alignment and structure
>1r29_A B-cell lymphoma 6 protein; BTB domain, transcriptional repression, transcription; 1.30A {Homo sapiens} SCOP: d.42.1.1 PDB: 1r28_A 1r2b_A 3bim_A 3lbz_A* 3e4u_A Length = 127 Back     alignment and structure
>3fkc_A Transcriptional regulator kaiso; zinc finger and BTB domain containing 33, kaiso transcriptio ZNF-kaiso, ZNF348,wugsc:H_DJ525N14.1; 1.70A {Homo sapiens} PDB: 3m4t_A 3m8v_A Length = 116 Back     alignment and structure
>2ihc_A Transcription regulator protein BACH1; BRIC-A-BRAC domain,transcription factor, protein-PROT interaction; 2.44A {Homo sapiens} Length = 124 Back     alignment and structure
>2z8h_A Transcription regulator protein BACH1; BTB, POZ, disulfide bond, activator, DNA-binding, nucleus, phosphorylation, repressor; 2.50A {Mus musculus} Length = 138 Back     alignment and structure
>3m5b_A Zinc finger and BTB domain-containing protein 32; POZ domain, BTB/POZ domain, ZBTB32, zinc finger domain-containing protein 32; 2.00A {Homo sapiens} Length = 119 Back     alignment and structure
>2ppi_A Gigaxonin; BTB domain, protein degradation, structural genomics, struct genomics consortium, SGC, structural protein; 2.40A {Homo sapiens} Length = 144 Back     alignment and structure
>4eoz_A Speckle-type POZ protein; E3 ubiquitin ligase, nucleus, protein binding; 2.40A {Homo sapiens} Length = 145 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query597
3hve_A256 Gigaxonin; ubiquitin, cytoplasm, cytoskeleton, dis 99.92
3i3n_A279 Kelch-like protein 11; structural genomics, BTB, K 99.91
2vkp_A109 BTB/POZ domain-containing protein 6; protein-bindi 99.84
3htm_A172 Speckle-type POZ protein; BTB, SPOP, ubiquitin, li 99.84
2if5_A120 Zinc finger and BTB domain-containing protein 7A; 99.83
4eoz_A145 Speckle-type POZ protein; E3 ubiquitin ligase, nuc 99.82
1r29_A127 B-cell lymphoma 6 protein; BTB domain, transcripti 99.82
3b84_A119 Zinc finger and BTB domain-containing protein 48; 99.82
2ppi_A144 Gigaxonin; BTB domain, protein degradation, struct 99.81
2z8h_A138 Transcription regulator protein BACH1; BTB, POZ, d 99.81
2vpk_A116 Myoneurin; transcription regulation, transcription 99.81
1buo_A121 POZ domain, protein (promyelocytic leukemia zinc f 99.81
3ohu_A125 Transcription regulator protein BACH2; BTB/POZ dom 99.8
3ga1_A129 Nucleus accumbens-associated protein 1; BTB/POZ do 99.8
2q81_A119 MIZ-1 protein; BTB/POZ domain, transcription; HET: 99.8
2yy9_A135 Zinc finger and BTB domain-containing protein 48; 99.8
2ihc_A124 Transcription regulator protein BACH1; BRIC-A-BRAC 99.8
3m5b_A119 Zinc finger and BTB domain-containing protein 32; 99.77
3hqi_A312 Speckle-type POZ protein; SPOP, ubiquitin, puckere 99.76
3fkc_A116 Transcriptional regulator kaiso; zinc finger and B 99.72
2ast_A159 S-phase kinase-associated protein 1A; SCF-substrat 99.37
4ajy_C97 Transcription elongation factor B polypeptide 1; E 99.2
1fs1_B141 SKP1, cyclin A/CDK2-associated P45; F-BOX, LRR, le 99.02
2p1m_A160 SKP1-like protein 1A; F-BOX, leucine rich repeat, 98.85
1hv2_A99 Elongin C, ELC1; protein-peptide complex, signalin 98.33
2fnj_C96 Transcription elongation factor B polypeptide 1; b 98.29
3v7d_A169 Suppressor of kinetochore protein 1; WD 40 domain, 98.28
1vcb_B112 Protein (elongin C); tumor suppressor, cancer, ubi 97.68
3drz_A107 BTB/POZ domain-containing protein KCTD5; potassium 97.42
3drx_A202 BTB/POZ domain-containing protein KCTD5; golgi, gr 95.3
3kvt_A115 Potassium channel protein SHAW; tetramerization do 94.5
1s1g_A124 Potassium voltage-gated channel subfamily D membe; 92.83
1t1d_A100 Protein (potassium channel KV1.1); potassium chann 92.52
2nz0_B140 Potassium voltage-gated channel subfamily D membe; 90.86
1nn7_A105 Potassium channel KV4.2; teteramerization domain, 90.61
2eqx_A105 Kelch repeat and BTB domain-containing protein 4; 84.79
>3hve_A Gigaxonin; ubiquitin, cytoplasm, cytoskeleton, disease mutation, kelch repeat, neurodegeneration, phosphoprotein, polymorphism, UBL conjugation; 2.80A {Homo sapiens} PDB: 3hve_B Back     alignment and structure
Probab=99.92  E-value=1.6e-26  Score=231.44  Aligned_cols=226  Identities=14%  Similarity=0.121  Sum_probs=162.2

Q ss_pred             CCCCCCCeeEEEEECCEEEEeehhhhhccCHHHHHHHhccCCC-CCccceEEecCCCCCHHHHHHHHHHHhCCCcccchh
Q 039661            1 LCTSGLPSDVTIEVGEMSFHLHKFPLLSRSGLLEKLIEEFCSG-DRSVCVLKLDGIPGGAKSFELVIKFCYGVKIELTAL   79 (597)
Q Consensus         1 ~~~~g~~~DV~I~Vg~~~F~lHK~vLas~S~yfr~lf~~~~~e-~~~~~~i~L~d~pGgae~felv~~FcYg~~i~it~~   79 (597)
                      ++.+|.+|||+|.|||+.|++||.+|+++|+||++||++++.+ ++...+|.|++++  +++|+.+++|+|||++.++.+
T Consensus        25 l~~~~~~~Dv~l~v~~~~f~~Hr~vLaa~S~yF~~mf~~~~~~~e~~~~~i~l~~v~--~~~f~~ll~~~Yt~~~~i~~~  102 (256)
T 3hve_A           25 FREESRFCDAHLVLDGEEIPVQKNILAAASPYIRTKLNYNPPKDDGSTYKIELEGIS--VMVMREILDYIFSGQIRLNED  102 (256)
T ss_dssp             CCC--CCCCEEEEETTEEEEECHHHHHTTCHHHHHTC-----------CEEECSSCC--HHHHHHHHHHHHHSCCCCC-C
T ss_pred             HHhcCCCcceEEEECCEEEechHHHHHHcCHHHHHHhCCCCCcccCCCCeEEeCCCC--HHHHHHHHhhccCCCCcccHh
Confidence            3568999999999999999999999999999999999986541 1345789999995  799999999999999999999


Q ss_pred             hHhHHHHhhcccccCccCCCCcHHHHHHHHHHH-hhhchhHHHHHHhhhhhHHHHhhhhc---hhhhHHHHHHHHHcCCC
Q 039661           80 NAVGLRCAAEYLHMTDDYGEGNLITQTEAFLND-VFSDWADAIKALETCQQVLPYAQDLH---VVSRCIDSLAMKACADP  155 (597)
Q Consensus        80 NV~~L~cAA~~LqMte~~~~~NL~~~ce~FL~~-vl~sw~dsi~~L~sC~~Llp~Ae~l~---iv~RCidsLA~kac~d~  155 (597)
                      ||..|+.||.+|||++      |.+.|+.||.+ +.         ..||..++.+|+.++   +.+.|.+-|+....   
T Consensus       103 ~v~~ll~~A~~l~i~~------l~~~c~~~L~~~l~---------~~n~~~i~~~A~~~~~~~L~~~~~~~i~~~f~---  164 (256)
T 3hve_A          103 TIQDVVQAADLLLLTD------LKTLCCEFLEGCIA---------AENCIGIRDFALHYCLHHVHYLATEYLETHFR---  164 (256)
T ss_dssp             CHHHHHHHHHHHTCHH------HHHHHHHHHHHTCC---------SSTTHHHHHHHHHTTCHHHHHHHHHHHHHHHH---
T ss_pred             HHHHHHHHHHHHChHH------HHHHHHHHHHhhCC---------HhhHHHHHHHHHHcCcHHHHHHHHHHHHHHHH---
Confidence            9999999999999998      99999999999 63         458888999999887   44555555544321   


Q ss_pred             CCCcCCCcCCCCccccccccCcccCCCCCCCCCCccccccccCChHHHHHHHHHHHhCCCChHHHHHHHHHHHHhhcccc
Q 039661          156 NLFNWPASECNNTQKISIWNGISTATKPKSTGDDWWFGDVSSLSFPLYKLFIFALESRSMKPEKIAASLMCYANRYIPLM  235 (597)
Q Consensus       156 ~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~dWW~EDl~~L~l~lf~rvI~am~~~g~~~e~I~~aL~~Ya~k~lp~l  235 (597)
                       .+                               +-.+++..|+.+.+..+|+.......+++.|..+++.|++...+. 
T Consensus       165 -~v-------------------------------~~~~~f~~L~~~~l~~lL~~d~L~v~~E~~v~~av~~W~~~~~~~-  211 (256)
T 3hve_A          165 -DV-------------------------------SSTEEFLELSPQKLKEVISLEKLNVGNERYVFEAVIRWIAHDTEI-  211 (256)
T ss_dssp             -HH-------------------------------TTCHHHHSSCHHHHHHHHHCC-------CTTHHHHTTTCCC--CC-
T ss_pred             -HH-------------------------------hCCcchhcCCHHHHHHHHccCCCCCCCHHHHHHHHHHHHHcCHHH-
Confidence             00                               003688999999999999988877777889999999887432211 


Q ss_pred             ccCCCCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHHHHhhCCC-hHHHHHHHH
Q 039661          236 NRQSSFSSGTNYANPGASISSLSEAEQRALLEEIVDLLPNKREVTSTHLLLKLLRAAMVLHAS-PSCKENLEK  307 (597)
Q Consensus       236 ~r~~~~~~~~~~~~~~~~~~~~~~~~qr~lLE~Iv~lLp~~~~~vs~~fLf~LLR~a~~l~as-~~cr~~LE~  307 (597)
                       |.                     ..-..|++.|..      +.+|..+|...+...-.+..+ +.||.-|++
T Consensus       212 -R~---------------------~~~~~ll~~VRf------~~l~~~~l~~~v~~~~l~~~~~~~c~~ll~~  256 (256)
T 3hve_A          212 -RK---------------------VHMKDVMSALWV------SGLDSSYLREQMLNEPLVREIVKECSNIPLS  256 (256)
T ss_dssp             -ST---------------------TTHHHHHHHHHH------HTTCC-CHHHHHHTSTTHHHHHCC-------
T ss_pred             -HH---------------------HHHHHHHHhCCC------CCCCHHHHHHHHhcChHHHhhHHHHHHHhhC
Confidence             11                     123569999987      557777899998888888887 689988875
>3i3n_A Kelch-like protein 11; structural genomics, BTB, KLHL11A, SGC, structural genomics consortium, kelch repeat, secreted, protein binding; 2.60A {Homo sapiens} PDB: 4ap2_A* 4apf_A Back     alignment and structure
>2vkp_A BTB/POZ domain-containing protein 6; protein-binding; 1.9A {Homo sapiens} Back     alignment and structure
>3htm_A Speckle-type POZ protein; BTB, SPOP, ubiquitin, ligase, nucleus, UBL conjugation pathway, protein binding; 2.50A {Homo sapiens} Back     alignment and structure
>2if5_A Zinc finger and BTB domain-containing protein 7A; POZ domain, POK, proto oncogene, transcription F transcription; 2.00A {Homo sapiens} PDB: 2nn2_A Back     alignment and structure
>4eoz_A Speckle-type POZ protein; E3 ubiquitin ligase, nucleus, protein binding; 2.40A {Homo sapiens} Back     alignment and structure
>1r29_A B-cell lymphoma 6 protein; BTB domain, transcriptional repression, transcription; 1.30A {Homo sapiens} SCOP: d.42.1.1 PDB: 1r28_A 1r2b_A 3bim_A 3lbz_A* 3e4u_A Back     alignment and structure
>3b84_A Zinc finger and BTB domain-containing protein 48; krueppel related zinc finger protein 3, HKR3, ZBTB48, Z finger, oncogene; 1.74A {Homo sapiens} Back     alignment and structure
>2ppi_A Gigaxonin; BTB domain, protein degradation, structural genomics, struct genomics consortium, SGC, structural protein; 2.40A {Homo sapiens} Back     alignment and structure
>2z8h_A Transcription regulator protein BACH1; BTB, POZ, disulfide bond, activator, DNA-binding, nucleus, phosphorylation, repressor; 2.50A {Mus musculus} Back     alignment and structure
>2vpk_A Myoneurin; transcription regulation, transcription, metal-binding, alternative splicing, zinc, nucleus, BTB domain, zinc-finger, DNA-binding; 2.00A {Homo sapiens} Back     alignment and structure
>1buo_A POZ domain, protein (promyelocytic leukemia zinc finger prote; protein-protein interaction domain, transcriptional represso finger protein; 1.90A {Homo sapiens} SCOP: d.42.1.1 PDB: 1cs3_A Back     alignment and structure
>3ohu_A Transcription regulator protein BACH2; BTB/POZ domain; 2.10A {Homo sapiens} SCOP: d.42.1.0 PDB: 3ohv_A Back     alignment and structure
>3ga1_A Nucleus accumbens-associated protein 1; BTB/POZ domain, phosphoprotein, repressor, transcri transcription regulation; 2.10A {Homo sapiens} Back     alignment and structure
>2q81_A MIZ-1 protein; BTB/POZ domain, transcription; HET: PG4; 2.10A {Homo sapiens} PDB: 3m52_A Back     alignment and structure
>2yy9_A Zinc finger and BTB domain-containing protein 48; mouse, HKR3, structural genomics, NPPSFA; 2.60A {Mus musculus} Back     alignment and structure
>2ihc_A Transcription regulator protein BACH1; BRIC-A-BRAC domain,transcription factor, protein-PROT interaction; 2.44A {Homo sapiens} Back     alignment and structure
>3m5b_A Zinc finger and BTB domain-containing protein 32; POZ domain, BTB/POZ domain, ZBTB32, zinc finger domain-containing protein 32; 2.00A {Homo sapiens} SCOP: d.42.1.0 Back     alignment and structure
>3hqi_A Speckle-type POZ protein; SPOP, ubiquitin, puckered, nucleus, UBL conjugation pathway, protein binding, ligase; 2.62A {Homo sapiens} PDB: 3hu6_A Back     alignment and structure
>3fkc_A Transcriptional regulator kaiso; zinc finger and BTB domain containing 33, kaiso transcriptio ZNF-kaiso, ZNF348,wugsc:H_DJ525N14.1; 1.70A {Homo sapiens} PDB: 3m4t_A 3m8v_A Back     alignment and structure
>4ajy_C Transcription elongation factor B polypeptide 1; E3 ubiquitin ligase, transcription factor, hypoxic signaling transcription; 1.73A {Homo sapiens} PDB: 2izv_C 3dcg_B 3zrc_B* 3zrf_B 3ztc_B* 3ztd_B* 3zun_B* 2c9w_C 4awj_B* 4b95_B* 4b9k_B* 2fnj_C 1lqb_B 1lm8_C 2jz3_C 2xai_B 4b9k_E* Back     alignment and structure
>1fs1_B SKP1, cyclin A/CDK2-associated P45; F-BOX, LRR, leucine-rich repeat, SCF, ubiquitin, ubiquitin protein ligase; 1.80A {Homo sapiens} SCOP: a.157.1.1 d.42.1.1 PDB: 1fs2_B 1ldk_D Back     alignment and structure
>2p1m_A SKP1-like protein 1A; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_A* 2p1o_A* 2p1p_A* 2p1q_A* 3c6n_A* 3c6o_A* 3c6p_A* 3ogk_A* 3ogl_A* 3ogm_A* Back     alignment and structure
>1hv2_A Elongin C, ELC1; protein-peptide complex, signaling protein; NMR {Saccharomyces cerevisiae} SCOP: d.42.1.1 Back     alignment and structure
>2fnj_C Transcription elongation factor B polypeptide 1; beta-sandwich, lectin-like, SPRY, protein transport/signaling protein complex; 1.80A {Mus musculus} SCOP: d.42.1.1 PDB: 1lqb_B 1lm8_C 2jz3_C 2xai_B 2c9w_C 2izv_C 3dcg_B 3zrc_B* 3zrf_B Back     alignment and structure
>3v7d_A Suppressor of kinetochore protein 1; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_A* 3mks_A* Back     alignment and structure
>1vcb_B Protein (elongin C); tumor suppressor, cancer, ubiquitin, beta sandwich, transcription, transcriptional elongation; 2.70A {Homo sapiens} SCOP: d.42.1.1 Back     alignment and structure
>3drz_A BTB/POZ domain-containing protein KCTD5; potassium channel domain T1, pentamer, unkno function; 1.90A {Homo sapiens} Back     alignment and structure
>3drx_A BTB/POZ domain-containing protein KCTD5; golgi, grAsp55, potassium channel domain T1, pentameric assembly, HOST-virus interaction, nucleus; 3.11A {Homo sapiens} PDB: 3dry_A Back     alignment and structure
>3kvt_A Potassium channel protein SHAW; tetramerization domain, molecular recogni zinc-binding; 2.00A {Aplysia californica} SCOP: d.42.1.2 Back     alignment and structure
>1s1g_A Potassium voltage-gated channel subfamily D membe; K+ channels, tetramerization domain, T1 domain, transport PR; 2.60A {Homo sapiens} SCOP: d.42.1.2 Back     alignment and structure
>1t1d_A Protein (potassium channel KV1.1); potassium channels, tetramerization domain, aplysia KV1.1, proton transport, membrane protein; 1.51A {Aplysia californica} SCOP: d.42.1.2 PDB: 1eod_A 1eof_A 1eoe_A 1a68_A 1qdv_A 1exb_E* 1qdw_A 1dsx_A Back     alignment and structure
>2nz0_B Potassium voltage-gated channel subfamily D membe; KV4.3, kchip1, membrane protein; 3.20A {Homo sapiens} PDB: 2i2r_A Back     alignment and structure
>1nn7_A Potassium channel KV4.2; teteramerization domain, voltage gated potassium channel SHAL, membrane protein; 2.10A {Rattus norvegicus} SCOP: d.42.1.2 Back     alignment and structure
>2eqx_A Kelch repeat and BTB domain-containing protein 4; BACK domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 597
d1r29a_122 d.42.1.1 (A:) B-cell lymphoma 6 (Bcl6) protein BTB 5e-09
d1buoa_121 d.42.1.1 (A:) Promyelocytic leukaemia zinc finger 2e-08
>d1r29a_ d.42.1.1 (A:) B-cell lymphoma 6 (Bcl6) protein BTB domain {Human (Homo sapiens) [TaxId: 9606]} Length = 122 Back     information, alignment and structure

class: Alpha and beta proteins (a+b)
fold: POZ domain
superfamily: POZ domain
family: BTB/POZ domain
domain: B-cell lymphoma 6 (Bcl6) protein BTB domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 52.4 bits (125), Expect = 5e-09
 Identities = 25/95 (26%), Positives = 41/95 (43%), Gaps = 3/95 (3%)

Query: 1   LCTSGLPSDVTIEVGEMSFHLHKFPLLSRSGLLEKLIEEFCSGDRSVCVLKLDGIPGGAK 60
           L +  + +DV I V    F  HK  L++ SGL   +  +    + SV  L    I    +
Sbjct: 19  LRSRDILTDVVIVVSREQFRAHKTVLMACSGLFYSIFTDQLKRNLSVINL-DPEIN--PE 75

Query: 61  SFELVIKFCYGVKIELTALNAVGLRCAAEYLHMTD 95
            F +++ F Y  ++ L   N + +   A YL M  
Sbjct: 76  GFNILLDFMYTSRLNLREGNIMAVMATAMYLQMEH 110
>d1buoa_ d.42.1.1 (A:) Promyelocytic leukaemia zinc finger (PLZF) protein BTB domain {Human (Homo sapiens) [TaxId: 9606]} Length = 121 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query597
d1r29a_122 B-cell lymphoma 6 (Bcl6) protein BTB domain {Human 99.84
d1buoa_121 Promyelocytic leukaemia zinc finger (PLZF) protein 99.83
d1hv2a_99 Elongin C {Baker's yeast (Saccharomyces cerevisiae 97.61
d2c9wc196 Elongin C {Human (Homo sapiens) [TaxId: 9606]} 97.38
d3kvta_103 akv3.1 voltage-gated potassium channel {California 96.32
d1nn7a_105 Potassium channel kv4.2 {Rat (Rattus norvegicus) [ 96.11
d1t1da_100 Shaker potassium channel {California sea hare (Apl 94.97
d1fs1b261 Cyclin A/CDK2-associated p45, Skp1 {Human (Homo sa 93.79
d1nexa272 Centromere DNA-binding protein complex Cbf3 subuni 90.88
>d1r29a_ d.42.1.1 (A:) B-cell lymphoma 6 (Bcl6) protein BTB domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: POZ domain
superfamily: POZ domain
family: BTB/POZ domain
domain: B-cell lymphoma 6 (Bcl6) protein BTB domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.84  E-value=1.5e-21  Score=173.83  Aligned_cols=101  Identities=22%  Similarity=0.377  Sum_probs=91.5

Q ss_pred             CCCCCeeEEEEECCEEEEeehhhhhccCHHHHHHHhccCCCCCccceEEecCCCCCHHHHHHHHHHHhCCCcccchhhHh
Q 039661            3 TSGLPSDVTIEVGEMSFHLHKFPLLSRSGLLEKLIEEFCSGDRSVCVLKLDGIPGGAKSFELVIKFCYGVKIELTALNAV   82 (597)
Q Consensus         3 ~~g~~~DV~I~Vg~~~F~lHK~vLas~S~yfr~lf~~~~~e~~~~~~i~L~d~pGgae~felv~~FcYg~~i~it~~NV~   82 (597)
                      ..|.+|||+|.|+|++|++||.+|+++|+||++||.+...+ +....+.+++++  |++|+.+++|+|||++.++.+||.
T Consensus        21 ~~~~~~Dv~l~v~~~~~~~Hk~vLa~~S~~F~~~f~~~~~e-~~~~~~~~~~v~--~~~f~~ll~~~Ytg~~~i~~~~v~   97 (122)
T d1r29a_          21 SRDILTDVVIVVSREQFRAHKTVLMACSGLFYSIFTDQLKR-NLSVINLDPEIN--PEGFNILLDFMYTSRLNLREGNIM   97 (122)
T ss_dssp             HTTCSCCEEEEETTEEEEECHHHHHHHCHHHHHHHTSTTTT-TCSEEECCTTSC--HHHHHHHHHHHHHSCCCCCTTTHH
T ss_pred             hcCCCeEEEEEECCEEEEEehHHhhhCCHHHHHHhccchhh-hcceeeeecccC--HHHHHHHHhhhcCCeecCchhhHH
Confidence            56899999999999999999999999999999999987765 334456667884  799999999999999999999999


Q ss_pred             HHHHhhcccccCccCCCCcHHHHHHHHHHH
Q 039661           83 GLRCAAEYLHMTDDYGEGNLITQTEAFLND  112 (597)
Q Consensus        83 ~L~cAA~~LqMte~~~~~NL~~~ce~FL~~  112 (597)
                      .++.||++|||++      |++.|++||+.
T Consensus        98 ~ll~~A~~l~i~~------L~~~C~~~L~~  121 (122)
T d1r29a_          98 AVMATAMYLQMEH------VVDTCRKFIKA  121 (122)
T ss_dssp             HHHHHHHHTTCHH------HHHHHHHHHHT
T ss_pred             HHHHHHHHHCcHH------HHHHHHHHHHh
Confidence            9999999999998      99999999973
>d1buoa_ d.42.1.1 (A:) Promyelocytic leukaemia zinc finger (PLZF) protein BTB domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1hv2a_ d.42.1.1 (A:) Elongin C {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d2c9wc1 d.42.1.1 (C:17-112) Elongin C {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d3kvta_ d.42.1.2 (A:) akv3.1 voltage-gated potassium channel {California sea hare (Aplysia californica) [TaxId: 6500]} Back     information, alignment and structure
>d1nn7a_ d.42.1.2 (A:) Potassium channel kv4.2 {Rat (Rattus norvegicus) [TaxId: 10116]} Back     information, alignment and structure
>d1t1da_ d.42.1.2 (A:) Shaker potassium channel {California sea hare (Aplysia californica) [TaxId: 6500]} Back     information, alignment and structure
>d1fs1b2 d.42.1.1 (B:2-68) Cyclin A/CDK2-associated p45, Skp1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1nexa2 d.42.1.1 (A:4-103) Centromere DNA-binding protein complex Cbf3 subunit D, CBF3D {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure