Citrus Sinensis ID: 039665

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-----
Protein Sequence
MSSDPISTSGISVEEEQNMMPEDGVRCPELLTAVGDLHGGVTVDMKKPMDSKVFSSRLRASLSLWRQQGKRGVWIKLPIELANLVEPAVQEGFRYHHAEPDYLMLVYWIPETADVLPANASHRVGVGAFVMNNKRELLVVQENNGALKGTGVWKLPTGTIEEGEDICAAAVREVKEETGIDTEFVEVLAFRQSHRSFFRKSDLFFVCMLRPRNFHIQKQDSEIAAAQWMQAEDYAAQPYVLKHQMFNYICQICLTKSEKEYAGFSPMPLTTGSGK
Secondary Structure (PSIPRED)
ccccccccccccHHHHHccccccccccccccEEcccccccEEEEccccccHHHHHHHHHHHHHHHHHccccEEEEEccccccccHHHHHHcccccccccccEEEEEEEEcccccccccccccEEEEEEEEEEccccEEEEEEccccccccccEEccEEEccccccHHHHHHHHHHHHcccEEEEEEEEEEEEcccccccEEEEEEEEEEcccccccccccccccEEEEEEHHcccccccccccHHHHHHHHHHHHHccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
cccccccccccEcccccccccccccccccHccccccccccEEEEccccccHHHHHHHHHHHHHHHHHcccEEEEEEEcHHHHHHHHHHHHcccEEEcccccEEEEEEEcccccccccccccEEEEEEEEEEEcccEEEEEEEccccccccccEEcccccccccccHHHHHHHHHHHHccccHHHHHHHHHHHHcccccccccEEEEEEEccccccccccHHHHHHcccccHHHHHHcccccccHHHHHHHHHHHHHHcccccccccEEEEccccc
Coil and Loop (DISEMBL)
mssdpistsgisveeeqnmmpedgvrcpELLTAvgdlhggvtvdmkkpmdskvFSSRLRASLSLWRQqgkrgvwiKLPIELANlvepavqegfryhhaepdYLMLVYWIpetadvlpanashrvgvgAFVMNNKRELLVVQEnngalkgtgvwklptgtieeGEDICAAAVREVkeetgidtEFVEVLAFRQshrsffrksdlffvcmlrprnfhiqkQDSEIAAAQWMQAEdyaaqpyvlKHQMFNYICQICLtksekeyagfspmplttgsgk
Flexible Loop (DISEMBL)
mssdpistsgisveeeqnmMPEDGVRCPELLTAVGDLHGGVTVDMKKPMDSKVFSSRLRASLSLWRQQGKRGVWIKLPIELANLVEPAVQEGFRYHHAEPDYLMLVYWIPETADVLPANASHRVGVGAFVMNNKRELLVVQenngalkgtgvwklptgtiEEGEDICAAAVREVKeetgidteFVEVLAFRQSHRSFFRKSDLFFVCMLRPRNFHIQKQDSEIAAAQWMQAEDYAAQPYVLKHQMFNYICQICLTKSekeyagfspmplttgsgk
Low Complexity Region (SEG)
MSSDPISTSGISVEEEQNMMPEDGVRCPELLTAVGDLHGGVTVDMKKPMDSKVFssrlraslslwrQQGKRGVWIKLPIELANLVEPAVQEGFRYHHAEPDYLMLVYWIPETADVLPANASHRVGVGAFVMNNKRELLVVQENNGALKGTGVWKLPTGTIEEGEDICAAAVREVKEETGIDTEFVEVLAFRQSHRSFFRKSDLFFVCMLRPRNFHIQKQDSEIAAAQWMQAEDYAAQPYVLKHQMFNYICQICLTKSEKEYAGFSPMPLTTGSGK
Disordered region (IsUnstruct)
*************************RCPELLTAVGDLHGGVTVDM*******VFSSRLRASLSLWRQQGKRGVWIKLPIELANLVEPAVQEGFRYHHAEPDYLMLVYWIPETADVLPANASHRVGVGAFVMNNKRELLVVQENNGALKGTGVWKLPTGTIEEGEDICAAAVREVKEETGIDTEFVEVLAFRQSHRSFFRKSDLFFVCMLRPRNFHIQKQDSEIAAAQWMQAEDYAAQPYVLKHQMFNYICQICLTKS******************
Disordered Region (DISOPRED)
*************************RCPELLTAVGDLHGGVTVDMKKPMDSKVFSSRLRASLSLWRQQGKRGVWIKLPIELANLVEPAVQEGFRYHHAEPDYLMLVYWIPETADVLPANASHRVGVGAFVMNNKRELLVVQENNGALKGTGVWKLPTGTIEEGEDICAAAVREVKEETGIDTEFVEVLAFRQSHRSFFRKSDLFFVCMLRPRNFHIQKQDSEIAAAQWMQAEDYAAQPYVLKHQMFNYICQICLTKSEKEYAGFSPMPL******
Disordered Region (DISEMBL)
**********ISVEEEQNMMPEDGVRCPELLTAVGDLHGGVTVDMKKPMDSKVFSSRLRASLSLWRQQGKRGVWIKLPIELANLVEPAVQEGFRYHHAEPDYLMLVYWIPETADVLPANASHRVGVGAFVMNNKRELLVVQENNGALKGTGVWKLPTGTIEEGEDICAAAVREVKEETGIDTEFVEVLAFRQSHRSFFRKSDLFFVCMLRPRNFHIQKQDSEIAAAQWMQAEDYAAQPYVLKHQMFNYICQICLTKSEKEYAGFSPMPLTTGSGK
Disordered Region (DISPRO)
*****************************LLTAVGDLHGGVTVDMKKPMDSKVFSSRLRASLSLWRQQGKRGVWIKLPIELANLVEPAVQEGFRYHHAEPDYLMLVYWIPETADVLPANASHRVGVGAFVMNNKRELLVVQENNGALKGTGVWKLPTGTIEEGEDICAAAVREVKEETGIDTEFVEVLAFRQSHRSFFRKSDLFFVCMLRPRNFHIQKQDSEIAAAQWMQAEDYAAQPYVLKHQMFNYICQICLTKSEKEYAGFSPMPLT*****
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MSSDPISTSGISVEEEQNMMPEDGVRCPELLTAVGDLHGGVTVDMKKPMDSKVFSSRLRASLSLWRQQGKRGVWIKLPIELANLVEPAVQEGFRYHHAEPDYLMLVYWIPETADVLPANASHRVGVGAFVMNNKRELLVVQENNGALKGTGVWKLPTGTIEEGEDICAAAVREVKEETGIDTEFVEVLAFRQSHRSFFRKSDLFFVCMLRPRNFHIQKQDSEIAAAQWMQAEDYAAQPYVLKHQMFNYICQICLTKSEKEYAGFSPMPLTTGSGK
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	275	2.2.26 [Sep-21-2011]
Q6NPD7	277	Nudix hydrolase 10 OS=Ara	yes	no	0.865	0.859	0.621	6e-86
Q94B74	278	Nudix hydrolase 2 OS=Arab	no	no	0.930	0.920	0.546	2e-85
Q9SU14	282	Nudix hydrolase 7 OS=Arab	no	no	0.894	0.872	0.592	4e-83
Q9SJC4	283	Nudix hydrolase 6 OS=Arab	no	no	0.894	0.869	0.554	8e-75
Q9SJC6	302	Nudix hydrolase 5 OS=Arab	no	no	0.883	0.804	0.549	5e-74
Q8L7W2	369	Nudix hydrolase 8 OS=Arab	no	no	0.916	0.682	0.533	5e-70
P70563	313	Nucleoside diphosphate-li	yes	no	0.716	0.629	0.389	6e-36
Q8CH40	313	Nucleoside diphosphate-li	yes	no	0.749	0.658	0.382	1e-35
P53370	316	Nucleoside diphosphate-li	yes	no	0.716	0.623	0.399	3e-35
P13420	217	Nucleoside diphosphate-li	N/A	no	0.549	0.695	0.407	3e-26

>sp|Q6NPD7|NUD10_ARATH Nudix hydrolase 10 OS=Arabidopsis thaliana GN=NUDT10 PE=1 SV=1

 Score =  317 bits (812), Expect = 6e-86,   Method: Compositional matrix adjust.
 Identities = 151/243 (62%), Positives = 183/243 (75%), Gaps = 5/243 (2%)

Query: 29  ELLTAVGDLHGGVTVDMKKPMDSKVFSSRLRASLSLWRQQGKRGVWIKLPIELANLVEPA 88
           E+L  V D +GGV V+MK PMD+K F + LR S   WR QGK+GVW+ LP+   NLVEPA
Sbjct: 18  EVLPFVDDDYGGVIVEMKTPMDTKNFVAALRDSFEQWRLQGKKGVWLNLPLSHVNLVEPA 77

Query: 89  VQEGFRYHHAEPDYLMLVYWIPETADVLPANASHRVGVGAFVMNNKRELLVVQENNGALK 148
           V+EGFRYHHAEP YLMLVYWIPE    +P NASHRV VGA V+N+ +E     E  G+L 
Sbjct: 78  VKEGFRYHHAEPTYLMLVYWIPEAESTIPLNASHRVRVGAVVLNHNKE-----EKYGSLC 132

Query: 149 GTGVWKLPTGTIEEGEDICAAAVREVKEETGIDTEFVEVLAFRQSHRSFFRKSDLFFVCM 208
           G+G+WK+PTG ++EGE+I AAA+REVKEETGIDTEF+E+LAF Q+H SFF KSDLFFVC+
Sbjct: 133 GSGIWKIPTGVVDEGEEIFAAAIREVKEETGIDTEFLEILAFCQTHESFFAKSDLFFVCL 192

Query: 209 LRPRNFHIQKQDSEIAAAQWMQAEDYAAQPYVLKHQMFNYICQICLTKSEKEYAGFSPMP 268
           LRP +F IQKQD EI AAQWM+ ED A+QP   K+ +F  I  IC  K EK Y+GFS  P
Sbjct: 193 LRPTSFDIQKQDLEIEAAQWMRFEDSASQPITHKNDLFKDIHHICSMKMEKSYSGFSKKP 252

Query: 269 LTT 271
           +TT
Sbjct: 253 ITT 255

Probably mediates the hydrolysis of some nucleoside diphosphate derivatives. In vitro, it can use both NADH and ADP-ribose as substrates; however the relevance of such substrates in vivo is unclear.
Arabidopsis thaliana (taxid: 3702)
EC: 3EC: .EC: 6EC: .EC: 1EC: .EC: 2EC: 2

>sp|Q94B74|NUDT2_ARATH Nudix hydrolase 2 OS=Arabidopsis thaliana GN=NUDT2 PE=1 SV=1

 Score =  315 bits (808), Expect = 2e-85,   Method: Compositional matrix adjust.
 Identities = 146/267 (54%), Positives = 191/267 (71%), Gaps = 11/267 (4%)

Query: 1   MSSDPISTSGISVEEEQNMMPEDGVRCPELLTAVGDLHGGVTVDMKKPMDSKVFSSRLRA 60
           MS+   ST+ +S E+   ++P           +V D +GGV  +M  PMD  +FS+ LR+
Sbjct: 1   MSASSSSTNPMSREDATTLLP-----------SVQDKYGGVMTEMTHPMDPSLFSTLLRS 49

Query: 61  SLSLWRQQGKRGVWIKLPIELANLVEPAVQEGFRYHHAEPDYLMLVYWIPETADVLPANA 120
           SLS W  QGK+GVWIKLP +L  L E AV+EGF +HHAE DYLMLVYWIP+  D LPANA
Sbjct: 50  SLSTWTLQGKKGVWIKLPKQLIGLAETAVKEGFWFHHAEKDYLMLVYWIPKEDDTLPANA 109

Query: 121 SHRVGVGAFVMNNKRELLVVQENNGALKGTGVWKLPTGTIEEGEDICAAAVREVKEETGI 180
           SHRVG+GAFV+N+ +E+LVVQE  G  +G G+WK PTG + EGEDI   +VREVKEETG+
Sbjct: 110 SHRVGIGAFVINHNKEVLVVQEKTGRFQGQGIWKFPTGVVNEGEDIHDGSVREVKEETGV 169

Query: 181 DTEFVEVLAFRQSHRSFFRKSDLFFVCMLRPRNFHIQKQDSEIAAAQWMQAEDYAAQPYV 240
           DTEF ++LAFRQ+H++FF KSDLFFVCML+P +  I  Q+SEI AAQWM  E+Y  QP+V
Sbjct: 170 DTEFDQILAFRQTHKAFFGKSDLFFVCMLKPLSLEINAQESEIEAAQWMPWEEYINQPFV 229

Query: 241 LKHQMFNYICQICLTKSEKEYAGFSPM 267
             +++  Y+  IC  K+  +Y GF+P+
Sbjct: 230 QNYELLRYMTDICSAKTNGDYEGFTPL 256

Probably mediates the hydrolysis of some nucleoside diphosphate derivatives. In vitro, it can use both NADH and ADP-ribose as substrates; however the relevance of such substrates in vivo is unclear.

Arabidopsis thaliana (taxid: 3702)

EC: 3

EC: .

EC: 6

EC: .

EC: 1

EC: .

EC: 2

EC: 2

>sp|Q9SU14|NUDT7_ARATH Nudix hydrolase 7 OS=Arabidopsis thaliana GN=NUDT7 PE=1 SV=1

 Score =  307 bits (787), Expect = 4e-83,   Method: Compositional matrix adjust.
 Identities = 147/248 (59%), Positives = 185/248 (74%), Gaps = 2/248 (0%)

Query: 30  LLTAVGDLHGGVTVDMKKPMDSKVFSSRLRASLSLWRQQGKRGVWIKLPIELANLVEPAV 89
           LL    D + GVTV M +PMDS+VF+  LRASLS WR++GK+G+WIKLP+ LANLVE AV
Sbjct: 10  LLEGETDNYDGVTVTMVEPMDSEVFTESLRASLSHWREEGKKGIWIKLPLGLANLVEAAV 69

Query: 90  QEGFRYHHAEPDYLMLVYWIPETADVLPANASHRVGVGAFVMN-NKRELLVVQENNGALK 148
            EGFRYHHAEP+YLMLV WI ET D +PANASH VG GA V+N N +E+LVVQE +G  K
Sbjct: 70  SEGFRYHHAEPEYLMLVSWISETPDTIPANASHVVGAGALVINKNTKEVLVVQERSGFFK 129

Query: 149 GTGVWKLPTGTIEEGEDICAAAVREVKEETGIDTEFVEVLAFRQSHRSFF-RKSDLFFVC 207
              VWKLPTG I EGEDI     REV+EETGI  +FVEVLAFRQSH++   +K+D+FF+C
Sbjct: 130 DKNVWKLPTGVINEGEDIWTGVAREVEEETGIIADFVEVLAFRQSHKAILKKKTDMFFLC 189

Query: 208 MLRPRNFHIQKQDSEIAAAQWMQAEDYAAQPYVLKHQMFNYICQICLTKSEKEYAGFSPM 267
           +L PR++ I +Q SEI  A+WM  ++Y  QP+  K++MF ++  IC  K E+EY GF+ +
Sbjct: 190 VLSPRSYDITEQKSEILQAKWMPIQEYVDQPWNKKNEMFKFMANICQKKCEEEYLGFAIV 249

Query: 268 PLTTGSGK 275
           P TT SGK
Sbjct: 250 PTTTSSGK 257

Mediates the hydrolysis of some nucleoside diphosphate derivatives. Can use both NADH and ADP-ribose as substrates, but not 8-oxo-dGTP, cyclic ADP-ribose, GDP-manose, UDP-glucose, ATP, or GTP. Exerts negative control of EDS1 signaling.

Arabidopsis thaliana (taxid: 3702)

EC: 3

EC: .

EC: 6

EC: .

EC: 1

EC: .

EC: 2

EC: 2

>sp|Q9SJC4|NUDT6_ARATH Nudix hydrolase 6 OS=Arabidopsis thaliana GN=NUDT6 PE=1 SV=1

 Score =  280 bits (716), Expect = 8e-75,   Method: Compositional matrix adjust.
 Identities = 138/249 (55%), Positives = 177/249 (71%), Gaps = 3/249 (1%)

Query: 30  LLTAVGDLHGGVTVDMKKPMDSKVFSSRLRASLSLWRQQGKRGVWIKLPIELANLVEPAV 89
           LL  V D +GGV V++ +PM  + F  +LRASL  W  QG +G+W+KL   L NL+ PA 
Sbjct: 10  LLQGVPDNYGGVKVNLTEPMTIEDFVPKLRASLVYWSNQGTKGIWLKLADGLDNLIAPAK 69

Query: 90  QEGFRYHHAEPDYLMLVYWIPETADVLPANASHRVGVGAFVMNNK-RELLVVQENNGALK 148
            EGF  HHAE +Y ML  WI +    LPANASHR+GVGAFV+N K +E+LVVQE +G  K
Sbjct: 70  AEGFVCHHAEREYTMLTSWIADVPSTLPANASHRIGVGAFVLNKKTKEVLVVQEIDGHFK 129

Query: 149 GTGVWKLPTGTIEEGEDICAAAVREVKEETGIDTEFVEVLAFRQSHRSFFR-KSDLFFVC 207
           GTGVWKLPTG ++EGE+I   A+REV+EETGI T+FVEVLAFR+SH++F   K+D+FF+C
Sbjct: 130 GTGVWKLPTGVVKEGENIWEGALREVEEETGIKTKFVEVLAFRESHQAFLEIKTDIFFLC 189

Query: 208 MLRPRNFHIQKQDSEIAAAQWMQAEDYAAQPYVLKHQMFNYICQICLTK-SEKEYAGFSP 266
            L P  F I+KQDSEI AA+WM  E+Y  QP+  K ++F ++  ICL +  E EY GFS 
Sbjct: 190 ELEPTTFEIKKQDSEILAAKWMPIEEYVNQPWNQKKELFRFMANICLKRLQEMEYMGFSK 249

Query: 267 MPLTTGSGK 275
           +  TT SGK
Sbjct: 250 VLTTTSSGK 258

Probably mediates the hydrolysis of some nucleoside diphosphate derivatives. In vitro, it can use both NADH and ADP-ribose as substrates; however the relevance of such substrates in vivo is unclear.

Arabidopsis thaliana (taxid: 3702)

EC: 3

EC: .

EC: 6

EC: .

EC: 1

EC: .

EC: 2

EC: 2

>sp|Q9SJC6|NUDT5_ARATH Nudix hydrolase 5 OS=Arabidopsis thaliana GN=NUDT5 PE=2 SV=3

 Score =  277 bits (709), Expect = 5e-74,   Method: Compositional matrix adjust.
 Identities = 138/251 (54%), Positives = 176/251 (70%), Gaps = 8/251 (3%)

Query: 30  LLTAVGDLHGGVTVDMKK--PMDSKVFSSRLRASLSLWRQQGKRGVWIKLPIELANLVEP 87
           LL    D  GG  V++ +   M    F S+L  SL  W+ QGK+G+WIKLP EL++LV+ 
Sbjct: 29  LLDGEEDRFGGTVVNLMEVESMTIGDFDSKLDVSLKAWKDQGKKGIWIKLPSELSSLVDT 88

Query: 88  AVQEGFRYHHAEPDYLMLVYWIPETADVLPANASHRVGVGAFVMNNKRELLVVQENNGAL 147
           A+++GF YHHAE +Y+ML +W+PE    LP NASHR+G+GAFV+N   E+LVVQEN+G  
Sbjct: 89  AIKKGFTYHHAENEYVMLTFWLPEPPSTLPCNASHRIGIGAFVLNKNGEMLVVQENSGYF 148

Query: 148 KGTGVWKLPTGTIEEGEDICAAAVREVKEETGIDTEFVEVLAFRQSHRSFF-RKSDLFFV 206
           K   VWK+PTGTI+EGE I A AVREVKEET ID EFVEVL+F +SH++ + RK+D+FFV
Sbjct: 149 KDKNVWKVPTGTIKEGESIWAGAVREVKEETDIDAEFVEVLSFMESHQAVWQRKTDIFFV 208

Query: 207 CMLRPRNFHIQKQDSEIAAAQWMQAEDYAAQPYVLK--HQMFNYICQICLTKSEKEYAGF 264
           C L  R F IQKQDSEI AA+WM  E+Y  QPY  K  ++MF  I  ICL +S ++Y GF
Sbjct: 209 CELEARTFEIQKQDSEIHAAKWMPVEEYVNQPYHNKEGNEMFKLIANICLKRSREKYTGF 268

Query: 265 SPMPLTTGSGK 275
               LTT S K
Sbjct: 269 ---VLTTNSAK 276

Probably mediates the hydrolysis of some nucleoside diphosphate derivatives.

Arabidopsis thaliana (taxid: 3702)

EC: 3

EC: .

EC: 6

EC: .

EC: 1

EC: .

EC: -

>sp|Q8L7W2|NUDT8_ARATH Nudix hydrolase 8 OS=Arabidopsis thaliana GN=NUDT8 PE=2 SV=2

 Score =  264 bits (675), Expect = 5e-70,   Method: Compositional matrix adjust.
 Identities = 136/255 (53%), Positives = 171/255 (67%), Gaps = 3/255 (1%)

Query: 24  GVRCPELLTAVGDLHGGVTVDMKK-PMDSKVFSSRLRASLSLWRQQGKRGVWIKLPIELA 82
            V+   LL A  D +GGV VD  K P +   F+S LRASLS WR++GK+GVW+KLP+E +
Sbjct: 89  AVKERSLLDAYDDEYGGVIVDHGKLPSNPYAFASMLRASLSDWRRKGKKGVWLKLPVEQS 148

Query: 83  NLVEPAVQEGFRYHHAEPDYLMLVYWIPET-ADVLPANASHRVGVGAFVMNNKRELLVVQ 141
            LV  A++EGF YHHAE  Y+ML YWIPE    +LPANASH+VGVG FV+N  +E+LVVQ
Sbjct: 149 ELVPIAIKEGFEYHHAEKGYVMLTYWIPEEEPSMLPANASHQVGVGGFVLNQHKEVLVVQ 208

Query: 142 ENNGALKGTGVWKLPTGTIEEGEDICAAAVREVKEETGIDTEFVEVLAFRQSHRSFFRKS 201
           E   A   TG+WKLPTG I E E+I + AVREVKEETG+DTEF EV+AFR +H   F KS
Sbjct: 209 EKYCAPSITGLWKLPTGFINESEEIFSGAVREVKEETGVDTEFSEVIAFRHAHNVAFEKS 268

Query: 202 DLFFVCMLRPRNFHIQKQDSEIAAAQWMQAEDYAAQPYVLKHQMFNYICQICLTKSEKEY 261
           DLFF+CMLRP +  I     EI AA+WM   ++  QP +   +MF  + +IC  +    Y
Sbjct: 269 DLFFICMLRPLSDKIIIDALEIKAAKWMPLAEFVEQPMIRGDKMFKRVIEICEARLSHRY 328

Query: 262 AGFSPMPL-TTGSGK 275
            G SP  L +T  GK
Sbjct: 329 CGLSPHRLVSTFDGK 343

Probably mediates the hydrolysis of some nucleoside diphosphate derivatives.

Arabidopsis thaliana (taxid: 3702)

EC: 3

EC: .

EC: 6

EC: .

EC: 1

EC: .

EC: -

>sp|P70563|NUDT6_RAT Nucleoside diphosphate-linked moiety X motif 6 OS=Rattus norvegicus GN=Nudt6 PE=1 SV=1

 Score =  151 bits (381), Expect = 6e-36,   Method: Compositional matrix adjust.
 Identities = 81/208 (38%), Positives = 117/208 (56%), Gaps = 11/208 (5%)

Query: 36  DLHGGVTVDMKKP-----MDSKVFSSRLRASLSLWRQQGKRGVWIKLPIELANLVEPAVQ 90
           D  GG++V + +      +D+  F   L+A++  WR +G+   W+ +PI  ++ + PA  
Sbjct: 48  DRFGGISVHLSRHRTLHRLDAAAFRRLLQAAIQQWRAEGRIAAWLHIPILQSHFIAPAAS 107

Query: 91  EGFRYHHAEPDYLMLVYWIPETADVLPANASHRVGVGAFVMN-NKRELLVVQENNGALKG 149
            GF +HHAEP    L  W+ E    LP  A+H+VGV   V + + R++LVVQ+ N   K 
Sbjct: 108 LGFCFHHAEPHLSTLTLWLGEGPSRLPGYATHQVGVAGAVFDVSTRKVLVVQDRN---KL 164

Query: 150 TGVWKLPTGTIEEGEDICAAAVREVKEETGIDTEFVEVLAFRQSHRS--FFRKSDLFFVC 207
             +WK P G  E GEDI   AVREV EETG+ +EF  +L+ RQ HRS   F  SD++ +C
Sbjct: 165 KNMWKFPGGLSEPGEDIGDTAVREVFEETGVKSEFRSLLSIRQQHRSPGAFGMSDMYLIC 224

Query: 208 MLRPRNFHIQKQDSEIAAAQWMQAEDYA 235
            L+PR+F I     E    +WM  E  A
Sbjct: 225 RLQPRSFTINFCQQECLKCEWMDLESLA 252

May contribute to the regulation of cell proliferation.

Rattus norvegicus (taxid: 10116)

>sp|Q8CH40|NUDT6_MOUSE Nucleoside diphosphate-linked moiety X motif 6 OS=Mus musculus GN=Nudt6 PE=2 SV=1

 Score =  149 bits (377), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 83/217 (38%), Positives = 119/217 (54%), Gaps = 11/217 (5%)

Query: 27  CPELLTAVGDLHGGVTVDMKK-----PMDSKVFSSRLRASLSLWRQQGKRGVWIKLPIEL 81
           C   L    D  GGV+V + +      +D+  F   L+A++  WR  G+   W+ +PI  
Sbjct: 39  CGAELQGELDRFGGVSVHLSRHHTLHGLDAAAFRRLLQAAIQQWRSDGRIAAWLHIPILQ 98

Query: 82  ANLVEPAVQEGFRYHHAEPDYLMLVYWIPETADVLPANASHRVGVGAFVMN-NKRELLVV 140
           ++ + PA   GF +HHA+P    L  W+ E    LP  A+H+VGV   V + + R++LVV
Sbjct: 99  SHFIAPAASLGFCFHHAKPHSSTLTLWLGEGPSRLPGYATHQVGVAGAVFDVSTRKVLVV 158

Query: 141 QENNGALKGTGVWKLPTGTIEEGEDICAAAVREVKEETGIDTEFVEVLAFRQSHRS--FF 198
           Q+ N   K   +WK P G  E GEDI   AVREV EETG+ +EF  +L+ RQ HRS   F
Sbjct: 159 QDRN---KLKNMWKFPGGLSEPGEDIADTAVREVFEETGVKSEFRSLLSIRQQHRSPGAF 215

Query: 199 RKSDLFFVCMLRPRNFHIQKQDSEIAAAQWMQAEDYA 235
             SD++ VC L+PR+F I     E    +W+  E+ A
Sbjct: 216 GMSDMYLVCRLQPRSFTINFCQQECLKCEWIDLENLA 252

May contribute to the regulation of cell proliferation.

Mus musculus (taxid: 10090)

>sp|P53370|NUDT6_HUMAN Nucleoside diphosphate-linked moiety X motif 6 OS=Homo sapiens GN=NUDT6 PE=1 SV=2

 Score =  148 bits (374), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 83/208 (39%), Positives = 115/208 (55%), Gaps = 11/208 (5%)

Query: 36  DLHGGVTVDMKK-----PMDSKVFSSRLRASLSLWRQQGKRGVWIKLPIELANLVEPAVQ 90
           D  GG++V + +      +D+  F   L+A++  WR +G+  VW+ +PI  +  + PA  
Sbjct: 51  DRFGGISVRLARLDALDRLDAAAFQKGLQAAVQQWRSEGRTAVWLHIPILQSRFIAPAAS 110

Query: 91  EGFRYHHAEPDYLMLVYWIPETADVLPANASHRVGV-GAFVMNNKRELLVVQENNGALKG 149
            GF +HHAE D   L  W+ E    LP  ASH+VGV GA    + R++LVVQ+ N   K 
Sbjct: 111 LGFCFHHAESDSSTLTLWLREGPSRLPGYASHQVGVAGAVFDESTRKILVVQDRN---KL 167

Query: 150 TGVWKLPTGTIEEGEDICAAAVREVKEETGIDTEFVEVLAFRQSHRS--FFRKSDLFFVC 207
             +WK P G  E  EDI   AVREV EETGI +EF  VL+ RQ H +   F KSD++ +C
Sbjct: 168 KNMWKFPGGLSEPEEDIGDTAVREVFEETGIKSEFRSVLSIRQQHTNPGAFGKSDMYIIC 227

Query: 208 MLRPRNFHIQKQDSEIAAAQWMQAEDYA 235
            L+P +F I     E    +WM   D A
Sbjct: 228 RLKPYSFTINFCQEECLRCEWMDLNDLA 255

May contribute to the regulation of cell proliferation.

Homo sapiens (taxid: 9606)

>sp|P13420|NUDT6_XENLA Nucleoside diphosphate-linked moiety X motif 6 OS=Xenopus laevis GN=nudt6 PE=1 SV=1

 Score =  119 bits (297), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 64/157 (40%), Positives = 90/157 (57%), Gaps = 6/157 (3%)

Query: 82  ANLVEPAVQEGFRYHHAEPDYLMLVYWIPETADVLPANASHRVGV-GAFVMNNKRELLVV 140
           + L+  A  EGF +HHAE +   L  W+ +    LP  A+H+VGV GA +  +  ++LVV
Sbjct: 3   SRLISIAASEGFTFHHAERNESTLTLWLKDGPSKLPGYATHQVGVAGAVLDEDNGKVLVV 62

Query: 141 QENNGALKGTGVWKLPTGTIEEGEDICAAAVREVKEETGIDTEFVEVLAFRQSHR--SFF 198
           Q+ N   K    WK P G  ++GEDI A AVREV EETGI +EF  +L+ RQ H     F
Sbjct: 63  QDRN---KTVNAWKFPGGLSDQGEDIGATAVREVLEETGIHSEFKSLLSIRQQHNHPGAF 119

Query: 199 RKSDLFFVCMLRPRNFHIQKQDSEIAAAQWMQAEDYA 235
            KSDL+ +C L+P ++ I     E    +WM  ++ A
Sbjct: 120 GKSDLYIICRLKPLSYTINFCHQECLKCEWMDLQELA 156

May contribute to the regulation of cell proliferation.

Xenopus laevis (taxid: 8355)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	275
255587702	283	mutt domain protein, putative [Ricinus c	0.96	0.932	0.670	1e-103
296085037	355	unnamed protein product [Vitis vinifera]	0.934	0.723	0.673	1e-102
225447520	341	PREDICTED: nudix hydrolase 2-like [Vitis	0.934	0.753	0.673	1e-102
224131882	260	predicted protein [Populus trichocarpa]	0.894	0.946	0.699	1e-101
147839046	560	hypothetical protein VITISV_008535 [Viti	0.970	0.476	0.650	1e-101
359485843	284	PREDICTED: nudix hydrolase 2-like [Vitis	0.945	0.915	0.657	1e-100
296085038	294	unnamed protein product [Vitis vinifera]	0.945	0.884	0.657	1e-100
225447522	450	PREDICTED: nudix hydrolase 2-like [Vitis	0.970	0.593	0.650	1e-100
449453610	344	PREDICTED: nudix hydrolase 2-like [Cucum	0.941	0.752	0.660	2e-99
296085036	305	unnamed protein product [Vitis vinifera]	0.934	0.842	0.661	4e-99

>gi|255587702|ref|XP_002534364.1| mutt domain protein, putative [Ricinus communis] gi|223525430|gb|EEF28021.1| mutt domain protein, putative [Ricinus communis]

 Score =  381 bits (979), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 177/264 (67%), Positives = 211/264 (79%)

Query: 12  SVEEEQNMMPEDGVRCPELLTAVGDLHGGVTVDMKKPMDSKVFSSRLRASLSLWRQQGKR 71
           S+  E+ M+PE+ V   +LL AV DLHGGV V+MK+ MDS++F   LRAS+S WR QGK+
Sbjct: 6   SMSIEKQMVPENEVEQVKLLDAVEDLHGGVVVEMKENMDSEIFVPLLRASMSQWRHQGKK 65

Query: 72  GVWIKLPIELANLVEPAVQEGFRYHHAEPDYLMLVYWIPETADVLPANASHRVGVGAFVM 131
           G WIKLPI+L+ LV+P VQ GFRYHHAE DYLMLV W+P T D LP NASHRVG+GAF++
Sbjct: 66  GAWIKLPIQLSYLVDPVVQAGFRYHHAEADYLMLVKWLPSTPDTLPINASHRVGIGAFIV 125

Query: 132 NNKRELLVVQENNGALKGTGVWKLPTGTIEEGEDICAAAVREVKEETGIDTEFVEVLAFR 191
           NN RE+LVVQE +G  KGTGVWKLPTG + EGEDIC AAVREVKEETGID EFVEVLAFR
Sbjct: 126 NNNREMLVVQEKSGGFKGTGVWKLPTGVVNEGEDICKAAVREVKEETGIDAEFVEVLAFR 185

Query: 192 QSHRSFFRKSDLFFVCMLRPRNFHIQKQDSEIAAAQWMQAEDYAAQPYVLKHQMFNYICQ 251
           QSH+SFF KSDLFFVCMLRP +F+IQ Q+SEI AAQWM  E+Y  QPY  K+Q+F Y+ +
Sbjct: 186 QSHQSFFGKSDLFFVCMLRPLSFNIQVQESEIEAAQWMPIEEYVNQPYNQKYQLFKYVAE 245

Query: 252 ICLTKSEKEYAGFSPMPLTTGSGK 275
           IC  KSE++Y GFS + + T SGK
Sbjct: 246 ICKAKSERDYVGFSAVAVDTASGK 269

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|296085037|emb|CBI28452.3| unnamed protein product [Vitis vinifera]

 Score =  376 bits (966), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 173/257 (67%), Positives = 207/257 (80%)

Query: 19  MMPEDGVRCPELLTAVGDLHGGVTVDMKKPMDSKVFSSRLRASLSLWRQQGKRGVWIKLP 78
           ++ E+ V+  +LLT+  D +GGV V++K PMDS VF   LRAS+S WRQ+GK+GVWIKLP
Sbjct: 64  LVDENSVQQIQLLTSTDDAYGGVRVEIKNPMDSNVFGDLLRASISQWRQKGKKGVWIKLP 123

Query: 79  IELANLVEPAVQEGFRYHHAEPDYLMLVYWIPETADVLPANASHRVGVGAFVMNNKRELL 138
           IE ANL+E AV+EGFRYHHAEPDYLMLVYWIP+TA  LPANASHRVG+GAFV+N+KRE+L
Sbjct: 124 IEHANLIEAAVKEGFRYHHAEPDYLMLVYWIPKTAHTLPANASHRVGIGAFVINSKREVL 183

Query: 139 VVQENNGALKGTGVWKLPTGTIEEGEDICAAAVREVKEETGIDTEFVEVLAFRQSHRSFF 198
           VVQEN+G  K TGVWK PTG + EGEDIC AA+REV+EETGI TEFVE+LAFRQSHRSFF
Sbjct: 184 VVQENSGGFKDTGVWKFPTGVVNEGEDICTAAIREVEEETGIKTEFVEILAFRQSHRSFF 243

Query: 199 RKSDLFFVCMLRPRNFHIQKQDSEIAAAQWMQAEDYAAQPYVLKHQMFNYICQICLTKSE 258
            KSDLFFVCML+P +  IQKQ  EI AAQWM  E+YAAQP+V K+  F+ +  ICL K +
Sbjct: 244 TKSDLFFVCMLQPLSSEIQKQYEEIEAAQWMPVEEYAAQPFVKKNPQFDSVANICLAKID 303

Query: 259 KEYAGFSPMPLTTGSGK 275
            +Y G SP   T+ SGK
Sbjct: 304 VKYTGLSPFSATSSSGK 320

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225447520|ref|XP_002266987.1| PREDICTED: nudix hydrolase 2-like [Vitis vinifera]

 Score =  375 bits (964), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 173/257 (67%), Positives = 207/257 (80%)

Query: 19  MMPEDGVRCPELLTAVGDLHGGVTVDMKKPMDSKVFSSRLRASLSLWRQQGKRGVWIKLP 78
           ++ E+ V+  +LLT+  D +GGV V++K PMDS VF   LRAS+S WRQ+GK+GVWIKLP
Sbjct: 64  LVDENSVQQIQLLTSTDDAYGGVRVEIKNPMDSNVFGDLLRASISQWRQKGKKGVWIKLP 123

Query: 79  IELANLVEPAVQEGFRYHHAEPDYLMLVYWIPETADVLPANASHRVGVGAFVMNNKRELL 138
           IE ANL+E AV+EGFRYHHAEPDYLMLVYWIP+TA  LPANASHRVG+GAFV+N+KRE+L
Sbjct: 124 IEHANLIEAAVKEGFRYHHAEPDYLMLVYWIPKTAHTLPANASHRVGIGAFVINSKREVL 183

Query: 139 VVQENNGALKGTGVWKLPTGTIEEGEDICAAAVREVKEETGIDTEFVEVLAFRQSHRSFF 198
           VVQEN+G  K TGVWK PTG + EGEDIC AA+REV+EETGI TEFVE+LAFRQSHRSFF
Sbjct: 184 VVQENSGGFKDTGVWKFPTGVVNEGEDICTAAIREVEEETGIKTEFVEILAFRQSHRSFF 243

Query: 199 RKSDLFFVCMLRPRNFHIQKQDSEIAAAQWMQAEDYAAQPYVLKHQMFNYICQICLTKSE 258
            KSDLFFVCML+P +  IQKQ  EI AAQWM  E+YAAQP+V K+  F+ +  ICL K +
Sbjct: 244 TKSDLFFVCMLQPLSSEIQKQYEEIEAAQWMPVEEYAAQPFVKKNPQFDSVANICLAKID 303

Query: 259 KEYAGFSPMPLTTGSGK 275
            +Y G SP   T+ SGK
Sbjct: 304 VKYTGLSPFSATSSSGK 320

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224131882|ref|XP_002321202.1| predicted protein [Populus trichocarpa] gi|222861975|gb|EEE99517.1| predicted protein [Populus trichocarpa]

 Score =  374 bits (961), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 172/246 (69%), Positives = 204/246 (82%)

Query: 30  LLTAVGDLHGGVTVDMKKPMDSKVFSSRLRASLSLWRQQGKRGVWIKLPIELANLVEPAV 89
           LL AV DL+ G+ ++MK+P+DS  F   LRAS+  WRQQGK+GVWIKLPI L +LVEP V
Sbjct: 8   LLNAVEDLYEGIVIEMKEPVDSTEFIPSLRASIVKWRQQGKKGVWIKLPIGLVSLVEPIV 67

Query: 90  QEGFRYHHAEPDYLMLVYWIPETADVLPANASHRVGVGAFVMNNKRELLVVQENNGALKG 149
           QEGFRYHHAEPDYLMLVYWIP+T D LP NASHRVGVGAFV+N+  E+LVV+EN+G  KG
Sbjct: 68  QEGFRYHHAEPDYLMLVYWIPDTPDTLPENASHRVGVGAFVLNSNGEVLVVKENSGEFKG 127

Query: 150 TGVWKLPTGTIEEGEDICAAAVREVKEETGIDTEFVEVLAFRQSHRSFFRKSDLFFVCML 209
           TGVWKLPTG + EGEDI +A++REVKEETGIDTEF+EVLAFRQSHRSFF KSDLFF+CML
Sbjct: 128 TGVWKLPTGVVNEGEDIPSASIREVKEETGIDTEFMEVLAFRQSHRSFFSKSDLFFICML 187

Query: 210 RPRNFHIQKQDSEIAAAQWMQAEDYAAQPYVLKHQMFNYICQICLTKSEKEYAGFSPMPL 269
           RPR+F IQKQD E+ AAQWM  EDY  QPY  +HQ+F Y+ +IC TK++ +Y+GFS MP+
Sbjct: 188 RPRSFDIQKQDLELEAAQWMPIEDYVNQPYNKEHQLFKYVAEICKTKAKMDYSGFSAMPV 247

Query: 270 TTGSGK 275
              SGK
Sbjct: 248 GPDSGK 253

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147839046|emb|CAN77063.1| hypothetical protein VITISV_008535 [Vitis vinifera]

 Score =  374 bits (961), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 175/269 (65%), Positives = 215/269 (79%), Gaps = 2/269 (0%)

Query: 7   STSGISVEEEQNMMPEDGVRCPELLTAVGDLHGGVTVDMKKPMDSKVFSSRLRASLSLWR 66
           ST+ + V+E++  +PE+ V+  ELLT   D +GGV V++K  MDS VF   LRAS+S WR
Sbjct: 273 STTSMMVDEQR--LPENNVQQIELLTGTEDSYGGVRVEIKNRMDSSVFGDVLRASISQWR 330

Query: 67  QQGKRGVWIKLPIELANLVEPAVQEGFRYHHAEPDYLMLVYWIPETADVLPANASHRVGV 126
           Q+G +GVWIKLPI+ ANLVE A +EGF YHHAEPDYLMLV WIP+TA  LPANASHRVG+
Sbjct: 331 QKGTKGVWIKLPIQHANLVEAAAKEGFWYHHAEPDYLMLVLWIPKTAHTLPANASHRVGI 390

Query: 127 GAFVMNNKRELLVVQENNGALKGTGVWKLPTGTIEEGEDICAAAVREVKEETGIDTEFVE 186
           GAFV+N+KRE+LVVQEN+G  KGTGVWKLPTG + EGEDIC AA+REV+EETGI TEFVE
Sbjct: 391 GAFVINSKREVLVVQENSGRFKGTGVWKLPTGVVNEGEDICTAAIREVEEETGIKTEFVE 450

Query: 187 VLAFRQSHRSFFRKSDLFFVCMLRPRNFHIQKQDSEIAAAQWMQAEDYAAQPYVLKHQMF 246
           +LAFRQSH++FF KSDLFFVCML+P +  IQKQ+ E+ AAQWM  E+YAAQP+V K+ +F
Sbjct: 451 ILAFRQSHKAFFTKSDLFFVCMLQPLSTEIQKQEEELEAAQWMAMEEYAAQPFVKKNPLF 510

Query: 247 NYICQICLTKSEKEYAGFSPMPLTTGSGK 275
           + I  ICL K + +Y GFSP   T+ SGK
Sbjct: 511 DSIANICLAKKDMKYTGFSPFSATSSSGK 539

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359485843|ref|XP_002268284.2| PREDICTED: nudix hydrolase 2-like [Vitis vinifera]

 Score =  371 bits (952), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 171/260 (65%), Positives = 209/260 (80%)

Query: 16  EQNMMPEDGVRCPELLTAVGDLHGGVTVDMKKPMDSKVFSSRLRASLSLWRQQGKRGVWI 75
           ++  +PE+ V+  ELLT   D +GGV +++K  MDS VF   LRAS+S WRQ+G +GVWI
Sbjct: 4   DEQRLPENNVQQIELLTGTEDSYGGVRIEIKNRMDSNVFGDVLRASISQWRQKGTKGVWI 63

Query: 76  KLPIELANLVEPAVQEGFRYHHAEPDYLMLVYWIPETADVLPANASHRVGVGAFVMNNKR 135
           KLPI+ ANLVE AV+EGF YHHAEPDYLMLV WIP+TA  LPANASHRVG+GAFV+N+KR
Sbjct: 64  KLPIQHANLVEAAVKEGFWYHHAEPDYLMLVLWIPKTAHTLPANASHRVGIGAFVINSKR 123

Query: 136 ELLVVQENNGALKGTGVWKLPTGTIEEGEDICAAAVREVKEETGIDTEFVEVLAFRQSHR 195
           E+LVVQEN+G  KGTGVWKLPTG + EGEDIC AA+REV+EETGI TEFVE+LAFRQSH+
Sbjct: 124 EVLVVQENSGRFKGTGVWKLPTGVVNEGEDICTAAIREVEEETGIKTEFVEILAFRQSHK 183

Query: 196 SFFRKSDLFFVCMLRPRNFHIQKQDSEIAAAQWMQAEDYAAQPYVLKHQMFNYICQICLT 255
           +FF KSDLFFVCML+P +  IQKQ+ E+ AAQWM  E+YAAQP+V K+ +F+ I  ICL 
Sbjct: 184 AFFTKSDLFFVCMLQPLSTEIQKQEEELEAAQWMAMEEYAAQPFVKKNPLFDSIANICLA 243

Query: 256 KSEKEYAGFSPMPLTTGSGK 275
           K + +Y GFSP   T+ SGK
Sbjct: 244 KKDMKYTGFSPFSATSSSGK 263

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|296085038|emb|CBI28453.3| unnamed protein product [Vitis vinifera]

 Score =  371 bits (952), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 171/260 (65%), Positives = 209/260 (80%)

Query: 16  EQNMMPEDGVRCPELLTAVGDLHGGVTVDMKKPMDSKVFSSRLRASLSLWRQQGKRGVWI 75
           ++  +PE+ V+  ELLT   D +GGV +++K  MDS VF   LRAS+S WRQ+G +GVWI
Sbjct: 3   DEQRLPENNVQQIELLTGTEDSYGGVRIEIKNRMDSNVFGDVLRASISQWRQKGTKGVWI 62

Query: 76  KLPIELANLVEPAVQEGFRYHHAEPDYLMLVYWIPETADVLPANASHRVGVGAFVMNNKR 135
           KLPI+ ANLVE AV+EGF YHHAEPDYLMLV WIP+TA  LPANASHRVG+GAFV+N+KR
Sbjct: 63  KLPIQHANLVEAAVKEGFWYHHAEPDYLMLVLWIPKTAHTLPANASHRVGIGAFVINSKR 122

Query: 136 ELLVVQENNGALKGTGVWKLPTGTIEEGEDICAAAVREVKEETGIDTEFVEVLAFRQSHR 195
           E+LVVQEN+G  KGTGVWKLPTG + EGEDIC AA+REV+EETGI TEFVE+LAFRQSH+
Sbjct: 123 EVLVVQENSGRFKGTGVWKLPTGVVNEGEDICTAAIREVEEETGIKTEFVEILAFRQSHK 182

Query: 196 SFFRKSDLFFVCMLRPRNFHIQKQDSEIAAAQWMQAEDYAAQPYVLKHQMFNYICQICLT 255
           +FF KSDLFFVCML+P +  IQKQ+ E+ AAQWM  E+YAAQP+V K+ +F+ I  ICL 
Sbjct: 183 AFFTKSDLFFVCMLQPLSTEIQKQEEELEAAQWMAMEEYAAQPFVKKNPLFDSIANICLA 242

Query: 256 KSEKEYAGFSPMPLTTGSGK 275
           K + +Y GFSP   T+ SGK
Sbjct: 243 KKDMKYTGFSPFSATSSSGK 262

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225447522|ref|XP_002268326.1| PREDICTED: nudix hydrolase 2-like [Vitis vinifera]

 Score =  370 bits (949), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 175/269 (65%), Positives = 216/269 (80%), Gaps = 2/269 (0%)

Query: 7   STSGISVEEEQNMMPEDGVRCPELLTAVGDLHGGVTVDMKKPMDSKVFSSRLRASLSLWR 66
           STS + V+E+  M+PE+ V+  ELLT   D +GGV V++K  MDS VF   LRAS+  WR
Sbjct: 17  STSSMLVDEQ--MVPENSVQQIELLTTTDDDYGGVHVEIKNSMDSNVFGDLLRASILQWR 74

Query: 67  QQGKRGVWIKLPIELANLVEPAVQEGFRYHHAEPDYLMLVYWIPETADVLPANASHRVGV 126
           Q+G +GVWIKLPIE ANL+E AV+EGF YHHA+PDYLMLV+WIP+TA  LPANASHRVG+
Sbjct: 75  QKGTKGVWIKLPIEHANLIEAAVKEGFWYHHAQPDYLMLVHWIPKTAHTLPANASHRVGI 134

Query: 127 GAFVMNNKRELLVVQENNGALKGTGVWKLPTGTIEEGEDICAAAVREVKEETGIDTEFVE 186
           GAFV+N+KRE+LVVQEN+G  KGTGVWKLPTG + EGEDIC AA+REV+EETGI TEFVE
Sbjct: 135 GAFVVNSKREVLVVQENSGIFKGTGVWKLPTGVVNEGEDICTAAIREVEEETGIKTEFVE 194

Query: 187 VLAFRQSHRSFFRKSDLFFVCMLRPRNFHIQKQDSEIAAAQWMQAEDYAAQPYVLKHQMF 246
           VL+F QSH++FF KSDLFFVCMLRP +  IQKQD EI AAQWM  ++Y+AQP+V K  +F
Sbjct: 195 VLSFMQSHKAFFTKSDLFFVCMLRPLSSEIQKQDEEIEAAQWMPIDEYSAQPFVKKILLF 254

Query: 247 NYICQICLTKSEKEYAGFSPMPLTTGSGK 275
           + I  ICL K++ +Y GFSP+  T+ SG+
Sbjct: 255 DSIANICLAKNDMKYTGFSPLSSTSNSGE 283

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449453610|ref|XP_004144549.1| PREDICTED: nudix hydrolase 2-like [Cucumis sativus] gi|449521926|ref|XP_004167980.1| PREDICTED: nudix hydrolase 2-like [Cucumis sativus]

 Score =  368 bits (944), Expect = 2e-99,   Method: Compositional matrix adjust.
 Identities = 171/259 (66%), Positives = 204/259 (78%)

Query: 17  QNMMPEDGVRCPELLTAVGDLHGGVTVDMKKPMDSKVFSSRLRASLSLWRQQGKRGVWIK 76
           + + P   V+  ELL+ V D + GV V+MK PMDS  F S LRASLS W+QQGKRG+WIK
Sbjct: 76  EKVTPHANVQQLELLSGVHDRYDGVIVEMKDPMDSNEFGSLLRASLSQWKQQGKRGIWIK 135

Query: 77  LPIELANLVEPAVQEGFRYHHAEPDYLMLVYWIPETADVLPANASHRVGVGAFVMNNKRE 136
           LPIELANLVE  V+EGF +HHAEP+YLMLV WI ET + LPANASHRVG+GAFVMN+ RE
Sbjct: 136 LPIELANLVEVVVKEGFSFHHAEPNYLMLVRWISETTNNLPANASHRVGIGAFVMNSNRE 195

Query: 137 LLVVQENNGALKGTGVWKLPTGTIEEGEDICAAAVREVKEETGIDTEFVEVLAFRQSHRS 196
           +LVVQE +G  KGTGVWKLPTG + EGEDIC AA+REVKEETG+D EFVEVLAFRQSH +
Sbjct: 196 VLVVQEISGKFKGTGVWKLPTGVVNEGEDICDAAIREVKEETGVDAEFVEVLAFRQSHSA 255

Query: 197 FFRKSDLFFVCMLRPRNFHIQKQDSEIAAAQWMQAEDYAAQPYVLKHQMFNYICQICLTK 256
           FF KSDLFFVCMLRPR+F IQKQ SEI AA+WM  ++YA QP+V ++  F+Y+ ++CL K
Sbjct: 256 FFTKSDLFFVCMLRPRSFDIQKQASEIEAAKWMPIDEYADQPFVKENSGFDYVAKVCLAK 315

Query: 257 SEKEYAGFSPMPLTTGSGK 275
           +   Y G S MP  + SGK
Sbjct: 316 ANNSYNGLSAMPTYSASGK 334

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|296085036|emb|CBI28451.3| unnamed protein product [Vitis vinifera]

 Score =  366 bits (940), Expect = 4e-99,   Method: Compositional matrix adjust.
 Identities = 170/257 (66%), Positives = 208/257 (80%)

Query: 19  MMPEDGVRCPELLTAVGDLHGGVTVDMKKPMDSKVFSSRLRASLSLWRQQGKRGVWIKLP 78
           M+PE+ V+  ELLT   D +GGV V++K  MDS VF   LRAS+  WRQ+G +GVWIKLP
Sbjct: 1   MVPENSVQQIELLTTTDDDYGGVHVEIKNSMDSNVFGDLLRASILQWRQKGTKGVWIKLP 60

Query: 79  IELANLVEPAVQEGFRYHHAEPDYLMLVYWIPETADVLPANASHRVGVGAFVMNNKRELL 138
           IE ANL+E AV+EGF YHHA+PDYLMLV+WIP+TA  LPANASHRVG+GAFV+N+KRE+L
Sbjct: 61  IEHANLIEAAVKEGFWYHHAQPDYLMLVHWIPKTAHTLPANASHRVGIGAFVVNSKREVL 120

Query: 139 VVQENNGALKGTGVWKLPTGTIEEGEDICAAAVREVKEETGIDTEFVEVLAFRQSHRSFF 198
           VVQEN+G  KGTGVWKLPTG + EGEDIC AA+REV+EETGI TEFVEVL+F QSH++FF
Sbjct: 121 VVQENSGIFKGTGVWKLPTGVVNEGEDICTAAIREVEEETGIKTEFVEVLSFMQSHKAFF 180

Query: 199 RKSDLFFVCMLRPRNFHIQKQDSEIAAAQWMQAEDYAAQPYVLKHQMFNYICQICLTKSE 258
            KSDLFFVCMLRP +  IQKQD EI AAQWM  ++Y+AQP+V K  +F+ I  ICL K++
Sbjct: 181 TKSDLFFVCMLRPLSSEIQKQDEEIEAAQWMPIDEYSAQPFVKKILLFDSIANICLAKND 240

Query: 259 KEYAGFSPMPLTTGSGK 275
            +Y GFSP+  T+ SG+
Sbjct: 241 MKYTGFSPLSSTSNSGE 257

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	275
TAIR|locus:2168993	278	NUDT2 "nudix hydrolase homolog	0.865	0.856	0.563	5.9e-73
TAIR|locus:2058334	283	NUDT6 "nudix hydrolase homolog	0.894	0.869	0.530	2e-65
TAIR|locus:2058364	302	NUDT5 "nudix hydrolase homolog	0.883	0.804	0.525	4.1e-65
TAIR|locus:2171544	369	NUDT8 "nudix hydrolase homolog	0.963	0.718	0.477	3.1e-60
TAIR|locus:2058349	215	AT2G04440 "AT2G04440" [Arabido	0.494	0.632	0.463	1e-36
DICTYBASE|DDB_G0281219	376	DDB_G0281219 "Nucleoside dipho	0.654	0.478	0.374	4.1e-33
UNIPROTKB|F1RQN4	314	NUDT6 "Uncharacterized protein	0.709	0.621	0.394	4.7e-32
RGD|621356	313	Nudt6 "nudix (nucleoside dipho	0.716	0.629	0.375	3.3e-31
UNIPROTKB|E2RC30	316	NUDT6 "Uncharacterized protein	0.709	0.617	0.388	4.2e-31
UNIPROTKB|P53370	316	NUDT6 "Nucleoside diphosphate-	0.716	0.623	0.389	6.9e-31

TAIR|locus:2168993 NUDT2 "nudix hydrolase homolog 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 737 (264.5 bits), Expect = 5.9e-73, P = 5.9e-73
 Identities = 134/238 (56%), Positives = 171/238 (71%)

Query:    30 LLTAVGDLHGGVTVDMKKPMDSKVFXXXXXXXXXXXXQQGKRGVWIKLPIELANLVEPAV 89
             LL +V D +GGV  +M  PMD  +F             QGK+GVWIKLP +L  L E AV
Sbjct:    19 LLPSVQDKYGGVMTEMTHPMDPSLFSTLLRSSLSTWTLQGKKGVWIKLPKQLIGLAETAV 78

Query:    90 QEGFRYHHAEPDYLMLVYWIPETADVLPANASHRVGVGAFVMNNKRELLVVQENNGALKG 149
             +EGF +HHAE DYLMLVYWIP+  D LPANASHRVG+GAFV+N+ +E+LVVQE  G  +G
Sbjct:    79 KEGFWFHHAEKDYLMLVYWIPKEDDTLPANASHRVGIGAFVINHNKEVLVVQEKTGRFQG 138

Query:   150 TGVWKLPTGTIEEGEDICAAAVREVKEETGIDTEFVEVLAFRQSHRSFFRKSDLFFVCML 209
              G+WK PTG + EGEDI   +VREVKEETG+DTEF ++LAFRQ+H++FF KSDLFFVCML
Sbjct:   139 QGIWKFPTGVVNEGEDIHDGSVREVKEETGVDTEFDQILAFRQTHKAFFGKSDLFFVCML 198

Query:   210 RPRNFHIQKQDSEIAAAQWMQAEDYAAQPYVLKHQMFNYICQICLTKSEKEYAGFSPM 267
             +P +  I  Q+SEI AAQWM  E+Y  QP+V  +++  Y+  IC  K+  +Y GF+P+
Sbjct:   199 KPLSLEINAQESEIEAAQWMPWEEYINQPFVQNYELLRYMTDICSAKTNGDYEGFTPL 256

GO:0016787 "hydrolase activity" evidence=IEA;ISS

GO:0005829 "cytosol" evidence=RCA

GO:0047631 "ADP-ribose diphosphatase activity" evidence=IDA

GO:0051287 "NAD binding" evidence=IDA

GO:0006979 "response to oxidative stress" evidence=IMP

TAIR|locus:2058334 NUDT6 "nudix hydrolase homolog 6" [Arabidopsis thaliana (taxid:3702)]

 Score = 666 (239.5 bits), Expect = 2.0e-65, P = 2.0e-65
 Identities = 132/249 (53%), Positives = 170/249 (68%)

Query:    30 LLTAVGDLHGGVTVDMKKPMDSKVFXXXXXXXXXXXXQQGKRGVWIKLPIELANLVEPAV 89
             LL  V D +GGV V++ +PM  + F             QG +G+W+KL   L NL+ PA 
Sbjct:    10 LLQGVPDNYGGVKVNLTEPMTIEDFVPKLRASLVYWSNQGTKGIWLKLADGLDNLIAPAK 69

Query:    90 QEGFRYHHAEPDYLMLVYWIPETADVLPANASHRVGVGAFVMNNK-RELLVVQENNGALK 148
              EGF  HHAE +Y ML  WI +    LPANASHR+GVGAFV+N K +E+LVVQE +G  K
Sbjct:    70 AEGFVCHHAEREYTMLTSWIADVPSTLPANASHRIGVGAFVLNKKTKEVLVVQEIDGHFK 129

Query:   149 GTGVWKLPTGTIEEGEDICAAAVREVKEETGIDTEFVEVLAFRQSHRSFFR-KSDLFFVC 207
             GTGVWKLPTG ++EGE+I   A+REV+EETGI T+FVEVLAFR+SH++F   K+D+FF+C
Sbjct:   130 GTGVWKLPTGVVKEGENIWEGALREVEEETGIKTKFVEVLAFRESHQAFLEIKTDIFFLC 189

Query:   208 MLRPRNFHIQKQDSEIAAAQWMQAEDYAAQPYVLKHQMFNYICQICLTK-SEKEYAGFSP 266
              L P  F I+KQDSEI AA+WM  E+Y  QP+  K ++F ++  ICL +  E EY GFS 
Sbjct:   190 ELEPTTFEIKKQDSEILAAKWMPIEEYVNQPWNQKKELFRFMANICLKRLQEMEYMGFSK 249

Query:   267 MPLTTGSGK 275
             +  TT SGK
Sbjct:   250 VLTTTSSGK 258

GO:0016787 "hydrolase activity" evidence=IEA;ISS

GO:0005829 "cytosol" evidence=RCA

GO:0047631 "ADP-ribose diphosphatase activity" evidence=IDA

GO:0051287 "NAD binding" evidence=IDA

GO:0051707 "response to other organism" evidence=IEP

GO:0035529 "NADH pyrophosphatase activity" evidence=IDA

GO:0080151 "positive regulation of salicylic acid mediated signaling pathway" evidence=IEP

GO:0000165 "MAPK cascade" evidence=RCA

GO:0006612 "protein targeting to membrane" evidence=RCA

GO:0009595 "detection of biotic stimulus" evidence=RCA

GO:0009627 "systemic acquired resistance" evidence=RCA

GO:0009697 "salicylic acid biosynthetic process" evidence=RCA

GO:0009862 "systemic acquired resistance, salicylic acid mediated signaling pathway" evidence=RCA

GO:0009867 "jasmonic acid mediated signaling pathway" evidence=RCA

GO:0010200 "response to chitin" evidence=RCA

GO:0010310 "regulation of hydrogen peroxide metabolic process" evidence=RCA

GO:0010363 "regulation of plant-type hypersensitive response" evidence=RCA

GO:0031348 "negative regulation of defense response" evidence=RCA

GO:0034976 "response to endoplasmic reticulum stress" evidence=RCA

GO:0042742 "defense response to bacterium" evidence=RCA

GO:0043900 "regulation of multi-organism process" evidence=RCA

GO:0045088 "regulation of innate immune response" evidence=RCA

GO:0050832 "defense response to fungus" evidence=RCA

TAIR|locus:2058364 NUDT5 "nudix hydrolase homolog 5" [Arabidopsis thaliana (taxid:3702)]

 Score = 663 (238.4 bits), Expect = 4.1e-65, P = 4.1e-65
 Identities = 132/251 (52%), Positives = 169/251 (67%)

Query:    30 LLTAVGDLHGGVTVDMKKPMDSKV--FXXXXXXXXXXXXQQGKRGVWIKLPIELANLVEP 87
             LL    D  GG  V++ +     +  F             QGK+G+WIKLP EL++LV+ 
Sbjct:    29 LLDGEEDRFGGTVVNLMEVESMTIGDFDSKLDVSLKAWKDQGKKGIWIKLPSELSSLVDT 88

Query:    88 AVQEGFRYHHAEPDYLMLVYWIPETADVLPANASHRVGVGAFVMNNKRELLVVQENNGAL 147
             A+++GF YHHAE +Y+ML +W+PE    LP NASHR+G+GAFV+N   E+LVVQEN+G  
Sbjct:    89 AIKKGFTYHHAENEYVMLTFWLPEPPSTLPCNASHRIGIGAFVLNKNGEMLVVQENSGYF 148

Query:   148 KGTGVWKLPTGTIEEGEDICAAAVREVKEETGIDTEFVEVLAFRQSHRSFF-RKSDLFFV 206
             K   VWK+PTGTI+EGE I A AVREVKEET ID EFVEVL+F +SH++ + RK+D+FFV
Sbjct:   149 KDKNVWKVPTGTIKEGESIWAGAVREVKEETDIDAEFVEVLSFMESHQAVWQRKTDIFFV 208

Query:   207 CMLRPRNFHIQKQDSEIAAAQWMQAEDYAAQPYVLK--HQMFNYICQICLTKSEKEYAGF 264
             C L  R F IQKQDSEI AA+WM  E+Y  QPY  K  ++MF  I  ICL +S ++Y GF
Sbjct:   209 CELEARTFEIQKQDSEIHAAKWMPVEEYVNQPYHNKEGNEMFKLIANICLKRSREKYTGF 268

Query:   265 SPMPLTTGSGK 275
                 LTT S K
Sbjct:   269 V---LTTNSAK 276

GO:0016787 "hydrolase activity" evidence=IEA;ISS

GO:0005829 "cytosol" evidence=RCA

GO:0009627 "systemic acquired resistance" evidence=RCA

GO:0009697 "salicylic acid biosynthetic process" evidence=RCA

GO:0009863 "salicylic acid mediated signaling pathway" evidence=RCA

GO:0031348 "negative regulation of defense response" evidence=RCA

GO:0045087 "innate immune response" evidence=RCA

TAIR|locus:2171544 NUDT8 "nudix hydrolase homolog 8" [Arabidopsis thaliana (taxid:3702)]

 Score = 617 (222.3 bits), Expect = 3.1e-60, P = 3.1e-60
 Identities = 129/270 (47%), Positives = 168/270 (62%)

Query:     9 SGISVEEEQNMMPEDGVRCPELLTAVGDLHGGVTVDMKK-PMDSKVFXXXXXXXXXXXXQ 67
             +G++++    M     V+   LL A  D +GGV VD  K P +   F            +
Sbjct:    76 NGVNLKSRTLM--SSAVKERSLLDAYDDEYGGVIVDHGKLPSNPYAFASMLRASLSDWRR 133

Query:    68 QGKRGVWIKLPIELANLVEPAVQEGFRYHHAEPDYLMLVYWIPETA-DVLPANASHRVGV 126
             +GK+GVW+KLP+E + LV  A++EGF YHHAE  Y+ML YWIPE    +LPANASH+VGV
Sbjct:   134 KGKKGVWLKLPVEQSELVPIAIKEGFEYHHAEKGYVMLTYWIPEEEPSMLPANASHQVGV 193

Query:   127 GAFVMNNKRELLVVQENNGALKGTGVWKLPTGTIEEGEDICAAAVREVKEETGIDTEFVE 186
             G FV+N  +E+LVVQE   A   TG+WKLPTG I E E+I + AVREVKEETG+DTEF E
Sbjct:   194 GGFVLNQHKEVLVVQEKYCAPSITGLWKLPTGFINESEEIFSGAVREVKEETGVDTEFSE 253

Query:   187 VLAFRQSHRSFFRKSDLFFVCMLRPRNFHIQKQDSEIAAAQWMQAEDYAAQPYVLKHQMF 246
             V+AFR +H   F KSDLFF+CMLRP +  I     EI AA+WM   ++  QP +   +MF
Sbjct:   254 VIAFRHAHNVAFEKSDLFFICMLRPLSDKIIIDALEIKAAKWMPLAEFVEQPMIRGDKMF 313

Query:   247 NYICQICLTKSEKEYAGFSPMPL-TTGSGK 275
               + +IC  +    Y G SP  L +T  GK
Sbjct:   314 KRVIEICEARLSHRYCGLSPHRLVSTFDGK 343

GO:0016787 "hydrolase activity" evidence=IEA;ISS

GO:0005829 "cytosol" evidence=RCA

GO:0009611 "response to wounding" evidence=IEP

TAIR|locus:2058349 AT2G04440 "AT2G04440" [Arabidopsis thaliana (taxid:3702)]

 Score = 341 (125.1 bits), Expect = 1.0e-36, Sum P(2) = 1.0e-36
 Identities = 64/138 (46%), Positives = 92/138 (66%)

Query:    30 LLTAVGDLHGGVTVDMKK--PMDSKVFXXXXXXXXXXXXQQGKRGVWIKLPIELANLVEP 87
             LL    D +G V V++ +  PM+++ F             QGK+G+WIKLP EL++LV+ 
Sbjct:    10 LLIGKEDRYGRVEVNLMEVEPMNAEDFNAKLDVSFKAWKDQGKKGIWIKLPCELSSLVDI 69

Query:    88 AVQEGFRYHHAEPDYLMLVYWIPETADVLPANASHRVGVGAFVMNNKRELLVVQENNGAL 147
             A+++GF YHHAE +Y +L  WI +  + +PANASHR+G+GA V+N  RE+L VQE +G  
Sbjct:    70 AMKKGFTYHHAENEYAVLSSWISDLPNTIPANASHRIGIGALVLNKNREVLAVQEIDGVF 129

Query:   148 KGTGVWKLPTGTIEEGED 165
             K TG+WKLPTG I+E  +
Sbjct:   130 KDTGLWKLPTGVIQENRE 147

GO:0003824 "catalytic activity" evidence=ISS

GO:0005575 "cellular_component" evidence=ND

GO:0008152 "metabolic process" evidence=ISS

GO:0016787 "hydrolase activity" evidence=IEA

DICTYBASE|DDB_G0281219 DDB_G0281219 "Nucleoside diphosphate-linked moiety X motif 6" [Dictyostelium discoideum (taxid:44689)]

 Score = 361 (132.1 bits), Expect = 4.1e-33, P = 4.1e-33
 Identities = 70/187 (37%), Positives = 106/187 (56%)

Query:    70 KRGVWIKLPIELANLVEPAVQEGFRYHHAEPDYLMLVYWIP-ETADVLPANASHRVGVGA 128
             +RG+WI++P   + L+   V+ GF +HH + +Y+ML  W+P    + LP   SH +G G 
Sbjct:   158 RRGIWIEIPETNSILIPTLVENGFSFHHCQSNYIMLTKWLPIGEPNKLPHYTSHFIGCGG 217

Query:   129 FVMNNKRELLVVQENNGALKGTGVWKLPTGTIEEGEDICAAAVREVKEETGIDTEFVEVL 188
              V+N++ E+L++ E     K    WK+P G  + GEDIC  AVREV EETGI TEFV +L
Sbjct:   218 VVINDRNEILLITEKQRPDK----WKIPGGANDPGEDICETAVREVWEETGIRTEFVSIL 273

Query:   189 AFRQSHRSFFRKSDLFFVCMLRPRNFHIQKQDSEIAAAQWMQAEDYAA--QPYVLKHQMF 246
               RQ H   F + D++F+C L+P +  I    SEIA  +W   +++     P+ L+  + 
Sbjct:   274 GLRQLHNYAFNRGDIYFICALKPLSSEINSDPSEIAQCKWAPVKEFTEIETPFPLQKSVS 333

Query:   247 NYICQIC 253
                   C
Sbjct:   334 RLAYDYC 340

GO:0016787 "hydrolase activity" evidence=IEA

UNIPROTKB|F1RQN4 NUDT6 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 351 (128.6 bits), Expect = 4.7e-32, P = 4.7e-32
 Identities = 80/203 (39%), Positives = 110/203 (54%)

Query:    36 DLHGGVTV--DMKKPMDSKVFXXXXXXXXXXXXQQGKRGVWIKLPIELANLVEPAVQEGF 93
             D  GGV+V  D    +D+  F             +G+  VW+ +PI  +  + PA   GF
Sbjct:    52 DRFGGVSVKLDALDRLDTVAFQRALQAAIQKWRSEGRVAVWLHIPIFQSRFIAPAASLGF 111

Query:    94 RYHHAEPDYLMLVYWIPETADVLPANASHRVGV-GAFVMNNKRELLVVQENNGALKGTGV 152
              +HHAE D   L  W+ +    LP  A+H+VGV GA    N +++LVVQ+ N  LK   +
Sbjct:   112 CFHHAESDSSTLTLWLGKGPSRLPGYATHQVGVAGAVFDENTKKILVVQDRN-KLKN--M 168

Query:   153 WKLPTGTIEEGEDICAAAVREVKEETGIDTEFVEVLAFRQSHRS--FFRKSDLFFVCMLR 210
             WK P G  E GEDI   AVREV EETGI +EF+ +L+ RQ H +   F KSD++ +C L+
Sbjct:   169 WKFPGGLSEPGEDIGDTAVREVFEETGIKSEFMSLLSIRQQHTNPGAFGKSDMYIICRLK 228

Query:   211 PRNFHIQKQDSEIAAAQWMQAED 233
             PR+F I     E    +WM   D
Sbjct:   229 PRSFIINFCQHECLRCEWMDLSD 251

GO:0016787 "hydrolase activity" evidence=IEA

RGD|621356 Nudt6 "nudix (nucleoside diphosphate linked moiety X)-type motif 6" [Rattus norvegicus (taxid:10116)]

 Score = 343 (125.8 bits), Expect = 3.3e-31, P = 3.3e-31
 Identities = 78/208 (37%), Positives = 111/208 (53%)

Query:    36 DLHGGVTVDMKKP-----MDSKVFXXXXXXXXXXXXQQGKRGVWIKLPIELANLVEPAVQ 90
             D  GG++V + +      +D+  F             +G+   W+ +PI  ++ + PA  
Sbjct:    48 DRFGGISVHLSRHRTLHRLDAAAFRRLLQAAIQQWRAEGRIAAWLHIPILQSHFIAPAAS 107

Query:    91 EGFRYHHAEPDYLMLVYWIPETADVLPANASHRVGVGAFVMN-NKRELLVVQENNGALKG 149
              GF +HHAEP    L  W+ E    LP  A+H+VGV   V + + R++LVVQ+ N  LK 
Sbjct:   108 LGFCFHHAEPHLSTLTLWLGEGPSRLPGYATHQVGVAGAVFDVSTRKVLVVQDRN-KLKN 166

Query:   150 TGVWKLPTGTIEEGEDICAAAVREVKEETGIDTEFVEVLAFRQSHRS--FFRKSDLFFVC 207
               +WK P G  E GEDI   AVREV EETG+ +EF  +L+ RQ HRS   F  SD++ +C
Sbjct:   167 --MWKFPGGLSEPGEDIGDTAVREVFEETGVKSEFRSLLSIRQQHRSPGAFGMSDMYLIC 224

Query:   208 MLRPRNFHIQKQDSEIAAAQWMQAEDYA 235
              L+PR+F I     E    +WM  E  A
Sbjct:   225 RLQPRSFTINFCQQECLKCEWMDLESLA 252

GO:0005634 "nucleus" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA

GO:0016787 "hydrolase activity" evidence=IEA

UNIPROTKB|E2RC30 NUDT6 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 342 (125.4 bits), Expect = 4.2e-31, P = 4.2e-31
 Identities = 80/206 (38%), Positives = 109/206 (52%)

Query:    36 DLHGGVTVDMKK-----PMDSKVFXXXXXXXXXXXXQQGKRGVWIKLPIELANLVEPAVQ 90
             D  GGV+V + +      +D+  F             +G+  VW+ +PI  +  + PA  
Sbjct:    51 DRFGGVSVQLARLGALDRLDAASFRRGLQAAIQQWRSEGRIAVWLHIPILQSRFIAPAAS 110

Query:    91 EGFRYHHAEPDYLMLVYWIPETADVLPANASHRVGV-GAFVMNNKRELLVVQENNGALKG 149
              GF +HHAE D   L  W+ E    LP  A+H++GV GA    N R++LVVQ+ N  LK 
Sbjct:   111 LGFCFHHAESDSSTLTLWLGEGPSRLPGYATHQLGVAGAVFDENTRKILVVQDRN-KLKN 169

Query:   150 TGVWKLPTGTIEEGEDICAAAVREVKEETGIDTEFVEVLAFRQSHRS--FFRKSDLFFVC 207
               +WK P G  E GEDI   AVREV EETGI +EF  +L+ RQ H S   F KSD++ +C
Sbjct:   170 --MWKFPGGLSEPGEDIGDTAVREVFEETGIKSEFKSLLSIRQQHASPGAFGKSDMYIIC 227

Query:   208 MLRPRNFHIQKQDSEIAAAQWMQAED 233
              L+P +F I     E    +WM   D
Sbjct:   228 RLKPYSFTINFCQHECLRCEWMDLND 253

GO:0016787 "hydrolase activity" evidence=IEA

UNIPROTKB|P53370 NUDT6 "Nucleoside diphosphate-linked moiety X motif 6" [Homo sapiens (taxid:9606)]

 Score = 340 (124.7 bits), Expect = 6.9e-31, P = 6.9e-31
 Identities = 81/208 (38%), Positives = 108/208 (51%)

Query:    36 DLHGGVTV-----DMKKPMDSKVFXXXXXXXXXXXXQQGKRGVWIKLPIELANLVEPAVQ 90
             D  GG++V     D    +D+  F             +G+  VW+ +PI  +  + PA  
Sbjct:    51 DRFGGISVRLARLDALDRLDAAAFQKGLQAAVQQWRSEGRTAVWLHIPILQSRFIAPAAS 110

Query:    91 EGFRYHHAEPDYLMLVYWIPETADVLPANASHRVGV-GAFVMNNKRELLVVQENNGALKG 149
              GF +HHAE D   L  W+ E    LP  ASH+VGV GA    + R++LVVQ+ N  LK 
Sbjct:   111 LGFCFHHAESDSSTLTLWLREGPSRLPGYASHQVGVAGAVFDESTRKILVVQDRN-KLKN 169

Query:   150 TGVWKLPTGTIEEGEDICAAAVREVKEETGIDTEFVEVLAFRQSHRS--FFRKSDLFFVC 207
               +WK P G  E  EDI   AVREV EETGI +EF  VL+ RQ H +   F KSD++ +C
Sbjct:   170 --MWKFPGGLSEPEEDIGDTAVREVFEETGIKSEFRSVLSIRQQHTNPGAFGKSDMYIIC 227

Query:   208 MLRPRNFHIQKQDSEIAAAQWMQAEDYA 235
              L+P +F I     E    +WM   D A
Sbjct:   228 RLKPYSFTINFCQEECLRCEWMDLNDLA 255

GO:0016787 "hydrolase activity" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA

GO:0008083 "growth factor activity" evidence=TAS

GO:0008150 "biological_process" evidence=ND

GO:0005575 "cellular_component" evidence=ND

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q6NPD7	NUD10_ARATH	3, ., 6, ., 1, ., 2, 2	0.6213	0.8654	0.8592	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	3.6.1	0.963
3rd Layer	3.6.1.13	0.946
3rd Layer	3.6.1.22	0.946

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: gw1.XIV.3818.1 hypothetical protein (260 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	275
cd04670	127	cd04670, Nudix_Hydrolase_12, Members of the Nudix	4e-61
pfam00293	133	pfam00293, NUDIX, NUDIX domain	9e-23
cd02883	123	cd02883, Nudix_Hydrolase, Nudix hydrolase is a sup	6e-18
cd03675	134	cd03675, Nudix_Hydrolase_2, Contains a crystal str	2e-14
cd04671	123	cd04671, Nudix_Hydrolase_13, Members of the Nudix	4e-14
cd04678	129	cd04678, Nudix_Hydrolase_19, Members of the Nudix	2e-13
cd03671	147	cd03671, Ap4A_hydrolase_plant_like, Diadenosine te	1e-11
COG1051	145	COG1051, COG1051, ADP-ribose pyrophosphatase [Nucl	2e-11
cd04676	129	cd04676, Nudix_Hydrolase_17, Members of the Nudix	4e-11
cd04673	122	cd04673, Nudix_Hydrolase_15, Members of the Nudix	5e-11
cd04672	123	cd04672, Nudix_Hydrolase_14, Members of the Nudix	5e-11
cd03673	131	cd03673, Ap6A_hydrolase, Diadenosine hexaphosphate	6e-11
cd04680	120	cd04680, Nudix_Hydrolase_21, Members of the Nudix	9e-11
cd04699	129	cd04699, Nudix_Hydrolase_39, Members of the Nudix	2e-10
cd04677	132	cd04677, Nudix_Hydrolase_18, Members of the Nudix	2e-10
cd04684	128	cd04684, Nudix_Hydrolase_25, Contains a crystal st	4e-10
cd04700	142	cd04700, DR1025_like, DR1025 from Deinococcus radi	2e-09
cd04664	129	cd04664, Nudix_Hydrolase_7, Members of the Nudix h	3e-09
PRK00714	156	PRK00714, PRK00714, RNA pyrophosphohydrolase; Revi	5e-09
cd04681	130	cd04681, Nudix_Hydrolase_22, Members of the Nudix	6e-09
cd03425	124	cd03425, MutT_pyrophosphohydrolase, The MutT pyrop	7e-08
cd04679	125	cd04679, Nudix_Hydrolase_20, Members of the Nudix	9e-08
cd04690	118	cd04690, Nudix_Hydrolase_31, Members of the Nudix	1e-07
cd03428	130	cd03428, Ap4A_hydrolase_human_like, Diadenosine te	2e-07
COG0494	161	COG0494, MutT, NTP pyrophosphohydrolases including	4e-07
cd04683	120	cd04683, Nudix_Hydrolase_24, Members of the Nudix	4e-07
PRK09438	148	PRK09438, nudB, dihydroneopterin triphosphate pyro	5e-07
cd04687	128	cd04687, Nudix_Hydrolase_28, Members of the Nudix	5e-07
cd03424	137	cd03424, ADPRase_NUDT5, ADP-ribose pyrophosphatase	6e-07
cd03674	138	cd03674, Nudix_Hydrolase_1, Members of the Nudix h	9e-07
cd04665	118	cd04665, Nudix_Hydrolase_8, Members of the Nudix h	1e-06
cd04682	122	cd04682, Nudix_Hydrolase_23, Members of the Nudix	2e-06
cd04669	121	cd04669, Nudix_Hydrolase_11, Members of the Nudix	2e-06
PLN02325	144	PLN02325, PLN02325, nudix hydrolase	5e-06
cd03427	137	cd03427, MTH1, MutT homolog-1 (MTH1) is a member o	5e-06
cd04674	118	cd04674, Nudix_Hydrolase_16, Members of the Nudix	7e-06
cd04688	126	cd04688, Nudix_Hydrolase_29, Members of the Nudix	8e-06
cd03672	145	cd03672, Dcp2p, mRNA decapping enzyme 2 (Dcp2p), t	1e-05
cd04697	126	cd04697, Nudix_Hydrolase_38, Members of the Nudix	2e-05
cd04667	112	cd04667, Nudix_Hydrolase_10, Members of the Nudix	2e-05
COG2816	279	COG2816, NPY1, NTP pyrophosphohydrolases containin	4e-05
cd04696	125	cd04696, Nudix_Hydrolase_37, Members of the Nudix	5e-05
cd04662	126	cd04662, Nudix_Hydrolase_5, Members of the Nudix h	6e-05
PRK10776	129	PRK10776, PRK10776, nucleoside triphosphate pyroph	6e-05
cd03426	157	cd03426, CoAse, Coenzyme A pyrophosphatase (CoAse)	1e-04
cd04686	131	cd04686, Nudix_Hydrolase_27, Members of the Nudix	1e-04
PRK05379	340	PRK05379, PRK05379, bifunctional nicotinamide mono	1e-04
cd04663	126	cd04663, Nudix_Hydrolase_6, Members of the Nudix h	2e-04
cd04511	130	cd04511, Nudix_Hydrolase_4, Members of the Nudix h	2e-04
cd04685	133	cd04685, Nudix_Hydrolase_26, Members of the Nudix	3e-04
cd04693	127	cd04693, Nudix_Hydrolase_34, Members of the Nudix	4e-04
cd04695	131	cd04695, Nudix_Hydrolase_36, Members of the Nudix	5e-04
PRK08999	312	PRK08999, PRK08999, hypothetical protein; Provisio	9e-04
COG4119	161	COG4119, COG4119, Predicted NTP pyrophosphohydrola	0.001
cd04694	143	cd04694, Nudix_Hydrolase_35, Members of the Nudix	0.001
cd04692	144	cd04692, Nudix_Hydrolase_33, Members of the Nudix	0.002
cd03429	131	cd03429, NADH_pyrophosphatase, NADH pyrophosphatas	0.002

>gnl|CDD|240027 cd04670, Nudix_Hydrolase_12, Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

 Score =  189 bits (481), Expect = 4e-61
 Identities = 70/132 (53%), Positives = 85/132 (64%), Gaps = 5/132 (3%)

Query: 122 HRVGVGAFVMNNKRELLVVQENNGALKGTGVWKLPTGTIEEGEDICAAAVREVKEETGID 181
           H VGVG  V+N K E+LVVQE N   K    WKLP G ++ GEDI   AVREV EETGID
Sbjct: 1   HTVGVGGLVLNEKNEVLVVQERN---KTPNGWKLPGGLVDPGEDIFDGAVREVLEETGID 57

Query: 182 TEFVEVLAFRQSHRSFFRKSDLFFVCMLRPRNFHIQKQDSEIAAAQWMQAEDYAAQPYVL 241
           TEFV V+ FR +H   F KSDL+F+C L+P +F I    SEIAAA+WM  E+Y +QP   
Sbjct: 58  TEFVSVVGFRHAHPGAFGKSDLYFICRLKPLSFDINFDTSEIAAAKWMPLEEYISQPIT- 116

Query: 242 KHQMFNYICQIC 253
             ++   I  IC
Sbjct: 117 -SEVNRLILDIC 127

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate specificity are determined by the N-terminal extension or by residues in variable loop regions. Mechanistically, substrate hydrolysis occurs by a nucleophilic substitution reaction, with variation in the numbers and roles of divalent cations required. Length = 127

>gnl|CDD|215841 pfam00293, NUDIX, NUDIX domain

 Score = 90.6 bits (225), Expect = 9e-23
 Identities = 31/127 (24%), Positives = 57/127 (44%), Gaps = 3/127 (2%)

Query: 122 HRVGVGAFVMNNKRELLVVQENNGALKGTGVWKLPTGTIEEGEDICAAAVREVKEETGID 181
            R  VG  ++N   E+L+V+ +   +   G+W+LP G +E GE    AAVRE++EETG+ 
Sbjct: 1   RRRAVGVVLLNEDGEVLLVRRSRPPV-FPGLWELPGGKVEPGESPEEAAVRELEEETGLR 59

Query: 182 TEFVEVLA--FRQSHRSFFRKSDLFFVCMLRPRNFHIQKQDSEIAAAQWMQAEDYAAQPY 239
              + +L      +      +    F+  L       Q  + E++  +W+  E+      
Sbjct: 60  VLLLLLLGVLEYPAPGRDGGEHVHVFLAELLGGEPEPQPNEDEVSEVRWVPLEELLELLL 119

Query: 240 VLKHQMF 246
             + +  
Sbjct: 120 AGEIREV 126

Length = 133

>gnl|CDD|239217 cd02883, Nudix_Hydrolase, Nudix hydrolase is a superfamily of enzymes found in all three kingdoms of life, and it catalyzes the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

 Score = 77.5 bits (191), Expect = 6e-18
 Identities = 30/112 (26%), Positives = 54/112 (48%), Gaps = 6/112 (5%)

Query: 124 VGVGAFVMNNKRELLVVQENNGALKGTGVWKLPTGTIEEGEDICAAAVREVKEETGID-T 182
           V VGA +++    +L+V+  +      G+W+LP G +E GE +  AA+REV+EETG+D  
Sbjct: 1   VAVGAVILDEDGRVLLVRRADS---PGGLWELPGGGVEPGETLEEAAIREVREETGLDVD 57

Query: 183 EFVEVLAFRQSHRSFFRKSDLFFVCMLRPRNFHI-QKQDSEIAAAQWMQAED 233
               +  +         +  + FV + R            EI+  +W+  ++
Sbjct: 58  VLRLLGVYEVESP-DEGEHAVVFVFLARLVGGEPTLLPPDEISEVRWVTLDE 108

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+ for their activity. Members of this family are recognized by a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which forms a structural motif that functions as a metal binding and catalytic site. Substrates of nudix hydrolase include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance and "house-cleaning" enzymes. Substrate specificity is used to define child families within the superfamily. Differences in substrate specificity are determined by the N-terminal extension or by residues in variable loop regions. Mechanistically, substrate hydrolysis occurs by a nucleophilic substitution reaction, with variation in the numbers and roles of divalent cations required. This superfamily consists of at least nine families: IPP (isopentenyl diphosphate) isomerase, ADP ribose pyrophosphatase, mutT pyrophosphohydrolase, coenzyme-A pyrophosphatase, MTH1-7,8-dihydro-8-oxoguanine-triphosphatase, diadenosine tetraphosphate hydrolase, NADH pyrophosphatase, GDP-mannose hydrolase and the c-terminal portion of the mutY adenine glycosylase. Length = 123

>gnl|CDD|239647 cd03675, Nudix_Hydrolase_2, Contains a crystal structure of the Nudix hydrolase from Nitrosomonas europaea, which has an unknown function

 Score = 68.0 bits (167), Expect = 2e-14
 Identities = 44/131 (33%), Positives = 56/131 (42%), Gaps = 21/131 (16%)

Query: 124 VGVGAFVMNNKRELLVVQENNGALKGTGVWKLPTGTIEEGEDICAAAVREVKEETGIDTE 183
           V V A V  + R LLV +E +G L    V+  P G +E GE +  AAVRE  EETG   E
Sbjct: 1   VTVAAVVERDGRFLLVEEETDGGL----VFNQPAGHLEPGESLIEAAVRETLEETGWHVE 56

Query: 184 FVEVLAFRQSH-----RSFFRKSDLF-FVCMLRPRNFHIQKQDSEIAAAQWMQAEDYAAQ 237
              +L   Q        ++ R    F F   L       Q  DS I  A W+  E+  A 
Sbjct: 57  PTALLGIYQWTAPDSDTTYLR----FAFAAELLEHL-PDQPLDSGIVRAHWLTLEEILAL 111

Query: 238 ------PYVLK 242
                 P VL+
Sbjct: 112 AARLRSPLVLR 122

In general, members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity. They also contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which forms a structural motif that functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate specificity are determined by the N-terminal extension or by residues in variable loop regions. Mechanistically, substrate hydrolysis occurs by a nucleophilic substitution reaction, with variation in the numbers and roles of divalent cations required. Length = 134

>gnl|CDD|240028 cd04671, Nudix_Hydrolase_13, Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

 Score = 67.1 bits (164), Expect = 4e-14
 Identities = 39/106 (36%), Positives = 57/106 (53%), Gaps = 10/106 (9%)

Query: 126 VGAFVMNNKRELLVVQENNGALKGTGVWKLPTGTIEEGEDICAAAVREVKEETGIDTEFV 185
           V A ++NN+ E+L++QE   + +G   W LP G +E GE I  A  REVKEETG+D E  
Sbjct: 3   VAAVILNNQGEVLLIQEAKRSCRGK--WYLPAGRMEPGETIEEAVKREVKEETGLDCEPT 60

Query: 186 EVLAFRQSHRSFFRKSDLFFVCMLRPRNFHIQ---KQDSEIAAAQW 228
            +L+  +   S+FR     FV         ++   + DSE   A+W
Sbjct: 61  TLLSVEEQGGSWFR-----FVFTGNITGGDLKTEKEADSESLQARW 101

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate specificity are determined by the N-terminal extension or by residues in variable loop regions. Mechanistically, substrate hydrolysis occurs by a nucleophilic substitution reaction, with variation in the numbers and roles of divalent cations required. Length = 123

>gnl|CDD|240034 cd04678, Nudix_Hydrolase_19, Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

 Score = 65.0 bits (159), Expect = 2e-13
 Identities = 32/71 (45%), Positives = 40/71 (56%), Gaps = 8/71 (11%)

Query: 123 RVGVGAFVMNNKRELLVVQENNGALKGT---GVWKLPTGTIEEGEDICAAAVREVKEETG 179
           RVGVG FV+N K ++L+     G  KG+   G W LP G +E GE     A REV EETG
Sbjct: 2   RVGVGVFVLNPKGKVLL-----GKRKGSHGAGTWALPGGHLEFGESFEECAAREVLEETG 56

Query: 180 IDTEFVEVLAF 190
           +  E V+ L  
Sbjct: 57  LHIENVQFLTV 67

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate specificity are determined by the N-terminal extension or by residues in variable loop regions. Mechanistically, substrate hydrolysis occurs by a nucleophilic substitution reaction, with variation in the numbers and roles of divalent cations required. Length = 129

>gnl|CDD|239643 cd03671, Ap4A_hydrolase_plant_like, Diadenosine tetraphosphate (Ap4A) hydrolase is a member of the Nudix hydrolase superfamily

 Score = 61.1 bits (149), Expect = 1e-11
 Identities = 26/68 (38%), Positives = 41/68 (60%), Gaps = 4/68 (5%)

Query: 122 HRVGVGAFVMNNKRELLVVQENNGALKGTGVWKLPTGTIEEGEDICAAAVREVKEETGID 181
           +R  VG  + N   ++ V +     +   G W+ P G I+EGED   AA+RE++EETG+D
Sbjct: 2   YRPNVGVVLFNEDGKVFVGRR----IDTPGAWQFPQGGIDEGEDPEQAALRELEEETGLD 57

Query: 182 TEFVEVLA 189
            + VE++A
Sbjct: 58  PDSVEIIA 65

Members of this family are well represented in a variety of prokaryotic and eukaryotic organisms. Phylogenetic analysis reveals two distinct subgroups where plant enzymes fall into one group (represented by this subfamily) and fungi/animals/archaea enzymes fall into another. Bacterial enzymes are found in both subfamilies. Ap4A is a potential by-product of aminoacyl tRNA synthesis, and accumulation of Ap4A has been implicated in a range of biological events, such as DNA replication, cellular differentiation, heat shock, metabolic stress, and apoptosis. Ap4A hydrolase cleaves Ap4A asymmetrically into ATP and AMP. It is important in the invasive properties of bacteria and thus presents a potential target for the inhibition of such invasive bacteria. Besides the signature nudix motif (G[X5]E[X7]REUXEEXGU where U is Ile, Leu, or Val), Ap4A hydrolase is structurally similar to the other members of the nudix superfamily with some degree of variations. Several regions in the sequences are poorly defined and substrate and metal binding sites are only predicted based on kinetic studies. Length = 147

>gnl|CDD|223979 COG1051, COG1051, ADP-ribose pyrophosphatase [Nucleotide transport and metabolism]

 Score = 60.1 bits (146), Expect = 2e-11
 Identities = 30/73 (41%), Positives = 39/73 (53%), Gaps = 3/73 (4%)

Query: 123 RVGVGAFVMNNKRELLVVQENNGALKGTGVWKLPTGTIEEGEDICAAAVREVKEETGIDT 182
            V VGA ++ N R LLV + N       G W LP G +E GE +  AA RE+KEETG+  
Sbjct: 10  LVAVGALIVRNGRILLVRRANEPGA---GYWALPGGFVEIGETLEEAARRELKEETGLRV 66

Query: 183 EFVEVLAFRQSHR 195
             +E+LA      
Sbjct: 67  RVLELLAVFDDPG 79

Length = 145

>gnl|CDD|240032 cd04676, Nudix_Hydrolase_17, Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

 Score = 58.9 bits (143), Expect = 4e-11
 Identities = 24/61 (39%), Positives = 37/61 (60%), Gaps = 5/61 (8%)

Query: 123 RVGVGAFVMNNKRELLVVQENNGALKGTGVWKLPTGTIEEGEDICAAAVREVKEETGIDT 182
             GV A V +++  +L+++ ++      G+W LP G +E GE     AVREV+EETG+D 
Sbjct: 2   LPGVTAVVRDDEGRVLLIRRSD-----NGLWALPGGAVEPGESPADTAVREVREETGLDV 56

Query: 183 E 183
           E
Sbjct: 57  E 57

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate specificity are determined by the N-terminal extension or by residues in variable loop regions. Mechanistically, substrate hydrolysis occurs by a nucleophilic substitution reaction, with variation in the numbers and roles of divalent cations required. Length = 129

>gnl|CDD|240030 cd04673, Nudix_Hydrolase_15, Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

 Score = 58.4 bits (142), Expect = 5e-11
 Identities = 27/66 (40%), Positives = 36/66 (54%), Gaps = 3/66 (4%)

Query: 124 VGVGAFVMNNKRELLVVQENNGALKGTGVWKLPTGTIEEGEDICAAAVREVKEETGIDTE 183
           V VGA V    R LLV + N       G+W  P G +E GE +  AA+RE+ EETG++ E
Sbjct: 1   VAVGAVVFRGGRVLLVRRANP---PDAGLWSFPGGKVELGETLEQAALRELLEETGLEAE 57

Query: 184 FVEVLA 189
              +L 
Sbjct: 58  VGRLLT 63

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate specificity are determined by the N-terminal extension or by residues in variable loop regions. Mechanistically, substrate hydrolysis occurs by a nucleophilic substitution reaction, with variation in the numbers and roles of divalent cations required. Length = 122

>gnl|CDD|240029 cd04672, Nudix_Hydrolase_14, Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

 Score = 58.4 bits (142), Expect = 5e-11
 Identities = 30/110 (27%), Positives = 52/110 (47%), Gaps = 14/110 (12%)

Query: 124 VGVGAFVMNNKRELLVVQENNGALKGTGVWKLPTGTIEEGEDICAAAVREVKEETGIDTE 183
           V V A +  + + +L+V+E     K  G+W LP G  + G       V+EVKEETG+D +
Sbjct: 3   VDVRAAIFKDGK-ILLVRE-----KSDGLWSLPGGWADVGLSPAENVVKEVKEETGLDVK 56

Query: 184 FVEVLAFRQSHR-----SFFRKSDLFFVCMLRPRNFHIQKQDSEIAAAQW 228
             ++ A    ++       ++   LFF+C +    F   K + E +   +
Sbjct: 57  VRKLAAVDDRNKHHPPPQPYQVYKLFFLCEILGGEF---KPNIETSEVGF 103

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate specificity are determined by the N-terminal extension or by residues in variable loop regions. Mechanistically, substrate hydrolysis occurs by a nucleophilic substitution reaction, with variation in the numbers and roles of divalent cations required. Length = 123

>gnl|CDD|239645 cd03673, Ap6A_hydrolase, Diadenosine hexaphosphate (Ap6A) hydrolase is a member of the Nudix hydrolase superfamily

 Score = 58.4 bits (142), Expect = 6e-11
 Identities = 31/107 (28%), Positives = 47/107 (43%), Gaps = 16/107 (14%)

Query: 134 KRELLVVQENNGALKGTGVWKLPTGTIEEGEDICAAAVREVKEETGIDTEFVEVLA---- 189
             E+L++    G       W LP G +E GE    AAVREV+EETGI  E  + L     
Sbjct: 15  GIEVLLIHRPRG-----DDWSLPKGKLEPGETPPEAAVREVEEETGIRAEVGDPLGTIRY 69

Query: 190 -FRQSHRSFFRKSDLFFVCMLRPRN--FHIQKQDSEIAAAQWMQAED 233
            F  S +   +    +   ++R     F  Q  D E+   +W+  ++
Sbjct: 70  WFSSSGKRVHKTVHWW---LMRALGGEFTPQP-DEEVDEVRWLPPDE 112

Ap6A hydrolase specifically hydrolyzes diadenosine polyphosphates, but not ATP or diadenosine triphosphate, and it generates ATP as the product. Ap6A, the most preferred substrate, hydrolyzes to produce two ATP molecules, which is a novel hydrolysis mode for Ap6A. These results indicate that Ap6A hydrolase is a diadenosine polyphosphate hydrolase. It requires the presence of a divalent cation, such as Mn2+, Mg2+, Zn2+, and Co2+, for activity. Members of the Nudix superfamily are recognized by a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which forms a structural motif that functions as a metal binding and catalytic site. Length = 131

>gnl|CDD|240036 cd04680, Nudix_Hydrolase_21, Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

 Score = 57.7 bits (140), Expect = 9e-11
 Identities = 30/107 (28%), Positives = 43/107 (40%), Gaps = 10/107 (9%)

Query: 124 VGVGAFVMNNKRELLVVQENNGALKGTGVWKLPTGTIEEGEDICAAAVREVKEETGIDTE 183
           +G  A V +    +L+V+           W LP G +E GE    AA RE+ EE GI   
Sbjct: 1   LGARAVVTDADGRVLLVRHT-----YGPGWYLPGGGLERGETFAEAARRELLEELGIRLA 55

Query: 184 FVEVLAFRQSHRSFFRKSDLFFVCMLRPRNF--HIQKQDSEIAAAQW 228
            V  L     + S     D   V   R R     + +   EI+ A++
Sbjct: 56  VVAEL-LGVYYHSASGSWDHVIV--FRARADTQPVIRPSHEISEARF 99

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate specificity are determined by the N-terminal extension or by residues in variable loop regions. Mechanistically, substrate hydrolysis occurs by a nucleophilic substitution reaction, with variation in the numbers and roles of divalent cations required. Length = 120

>gnl|CDD|240054 cd04699, Nudix_Hydrolase_39, Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

 Score = 57.0 bits (138), Expect = 2e-10
 Identities = 31/114 (27%), Positives = 46/114 (40%), Gaps = 5/114 (4%)

Query: 124 VGVGAFVMNNKRELLVVQENNGALKGTGVWKLPTGTIEEGEDICAAAVREVKEETGIDTE 183
           V V A ++ +   +L+++ +       G W+LP G +EEGE    A  REV EETG+   
Sbjct: 2   VAVAALIVKDVGRILILKRSKDERTAPGKWELPGGKVEEGETFEEALKREVYEETGLTVT 61

Query: 184 FVEVLAFRQSHRSFFRKS--DLFFVCMLRPRNFHIQKQDSEIAAAQWMQAEDYA 235
                    +H      +   L FVC          K   E     W+  E+ A
Sbjct: 62  PFLRYPSTVTHEDSGVYNVIYLVFVC---EALSGAVKLSDEHEEYAWVTLEELA 112

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate specificity are determined by the N-terminal extension or by residues in variable loop regions. Mechanistically, substrate hydrolysis occurs by a nucleophilic substitution reaction, with variation in the numbers and roles of divalent cations required. Length = 129

>gnl|CDD|240033 cd04677, Nudix_Hydrolase_18, Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

 Score = 56.8 bits (138), Expect = 2e-10
 Identities = 32/112 (28%), Positives = 52/112 (46%), Gaps = 13/112 (11%)

Query: 124 VGVGAFVMNNKRELLVVQENNGALKGTGVWKLPTGTIEEGEDICAAAVREVKEETGIDTE 183
           VG G  ++N + E+L+ +        TG W LP G +E GE +   A RE+KEETG++ E
Sbjct: 8   VGAGVILLNEQGEVLLQKR-----SDTGDWGLPGGAMELGESLEETARRELKEETGLEVE 62

Query: 184 FVEVLAFRQSHRSFFRKS---DLFFVCMLRPR----NFHIQKQDSEIAAAQW 228
            +E+L    S + F+ K    D  ++  L          +     E    ++
Sbjct: 63  ELELLGV-YSGKEFYVKPNGDDEQYIVTLYYVTKVFGGKLVPDGDETLELKF 113

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate specificity are determined by the N-terminal extension or by residues in variable loop regions. Mechanistically, substrate hydrolysis occurs by a nucleophilic substitution reaction, with variation in the numbers and roles of divalent cations required. Length = 132

>gnl|CDD|240040 cd04684, Nudix_Hydrolase_25, Contains a crystal structure of the Nudix hydrolase from Enterococcus faecalis, which has an unknown function

 Score = 56.1 bits (136), Expect = 4e-10
 Identities = 28/76 (36%), Positives = 38/76 (50%), Gaps = 7/76 (9%)

Query: 124 VGVGAFVMNNKRELLVVQENNGALKGTGVWKLPTGTIEEGEDICAAAVREVKEETGIDTE 183
            G  A +  + + LL++Q+N G     G W LP G IE GE    A  REV EETG+   
Sbjct: 1   FGAYAVIPRDGK-LLLIQKNGGP--YEGRWDLPGGGIEPGESPEEALHREVLEETGLT-- 55

Query: 184 FVEVLA-FRQSHRSFF 198
            VE+      + R F+
Sbjct: 56  -VEIGRRLGSASRYFY 70

In general, members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity. They also contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which forms a structural motif that functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate specificity are determined by the N-terminal extension or by residues in variable loop regions. Mechanistically, substrate hydrolysis occurs by a nucleophilic substitution reaction, with variation in the numbers and roles of divalent cations required. Length = 128

>gnl|CDD|240055 cd04700, DR1025_like, DR1025 from Deinococcus radiodurans, a member of the Nudix hydrolase superfamily, show nucleoside triphosphatase and dinucleoside polyphosphate pyrophosphatase activities

 Score = 54.5 bits (131), Expect = 2e-09
 Identities = 27/62 (43%), Positives = 40/62 (64%), Gaps = 2/62 (3%)

Query: 127 GAFVMNNKRELLVVQENNGALKGTGVWKLPTGTIEEGEDICAAAVREVKEETGIDTEFVE 186
           GA ++N + ++L+VQE  G  KG  +W +P+G +E+GE    AAVRE  EETG+    V+
Sbjct: 17  GAVILNERNDVLLVQEKGGPKKG--LWHIPSGAVEDGEFPQDAAVREACEETGLRVRPVK 74

Query: 187 VL 188
            L
Sbjct: 75  FL 76

Like other enzymes belonging to this superfamily, it requires a divalent cation, in this case Mg2+, for its activity. It also contains a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. In general, substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate specificity are determined by the N-terminal extension or by residues in variable loop regions. Mechanistically, substrate hydrolysis occurs by a nucleophilic substitution reaction, with variation in the numbers and roles of divalent cations required. Length = 142

>gnl|CDD|240022 cd04664, Nudix_Hydrolase_7, Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

 Score = 53.5 bits (129), Expect = 3e-09
 Identities = 34/92 (36%), Positives = 46/92 (50%), Gaps = 6/92 (6%)

Query: 151 GVWKLPTGTIEEGEDICAAAVREVKEETGIDTEFVEVLAFRQSHRSFFRKSDLFFVCMLR 210
           G W+  TG IE+GE    AA REV EETG+D E + +L  R +  +F   +D   V    
Sbjct: 28  GFWQSVTGGIEDGESPAEAARREVAEETGLDPERLTLLD-RGASIAFVEFTDNGRVWTEH 86

Query: 211 PRNFHIQ-----KQDSEIAAAQWMQAEDYAAQ 237
           P  FH+        D E  A +W+  E+ AA 
Sbjct: 87  PFAFHLPSDAVVTLDWEHDAFEWVPPEEAAAL 118

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate specificity are determined by the N-terminal extension or by residues in variable loop regions. Mechanistically, substrate hydrolysis occurs by a nucleophilic substitution reaction, with variation in the numbers and roles of divalent cations required. Length = 129

>gnl|CDD|234820 PRK00714, PRK00714, RNA pyrophosphohydrolase; Reviewed

 Score = 53.6 bits (130), Expect = 5e-09
 Identities = 21/68 (30%), Positives = 33/68 (48%), Gaps = 4/68 (5%)

Query: 122 HRVGVGAFVMNNKRELLVVQENNGALKGTGVWKLPTGTIEEGEDICAAAVREVKEETGID 181
           +R  VG  ++N + ++   +           W+ P G I+ GE    A  RE+ EE G+ 
Sbjct: 7   YRPNVGIILLNRQGQVFWGRRIGQ----GHSWQFPQGGIDPGETPEQAMYRELYEEVGLR 62

Query: 182 TEFVEVLA 189
            E VE+LA
Sbjct: 63  PEDVEILA 70

Length = 156

>gnl|CDD|240037 cd04681, Nudix_Hydrolase_22, Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

 Score = 53.2 bits (128), Expect = 6e-09
 Identities = 37/115 (32%), Positives = 57/115 (49%), Gaps = 14/115 (12%)

Query: 126 VGAFVMNNKRELLVVQENNGALKGTGVWKLPTGTIEEGEDICAAAVREVKEETGIDTEFV 185
           VG  ++N   ELLVV+      KGT    LP G ++ GE    A +RE++EETG+    V
Sbjct: 4   VGVLILNEDGELLVVRRAREPGKGT--LDLPGGFVDPGESAEEALIREIREETGLK---V 58

Query: 186 EVLAFRQSHRSFFRKS-------DLFFVCMLRPRNFHIQKQDSEIAAAQWMQAED 233
             L++  S  + +          DLFFVC +   +  I K   ++A  +W+  +D
Sbjct: 59  TELSYLFSLPNTYPYGGMEYDTLDLFFVCQV--DDKPIVKAPDDVAELKWVVPQD 111

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate specificity are determined by the N-terminal extension or by residues in variable loop regions. Mechanistically, substrate hydrolysis occurs by a nucleophilic substitution reaction, with variation in the numbers and roles of divalent cations required. Length = 130

>gnl|CDD|239517 cd03425, MutT_pyrophosphohydrolase, The MutT pyrophosphohydrolase is a prototypical Nudix hydrolase that catalyzes the hydrolysis of nucleoside and deoxynucleoside triphosphates (NTPs and dNTPs) by substitution at a beta-phosphorus to yield a nucleotide monophosphate (NMP) and inorganic pyrophosphate (PPi)

 Score = 49.8 bits (120), Expect = 7e-08
 Identities = 25/64 (39%), Positives = 38/64 (59%), Gaps = 1/64 (1%)

Query: 126 VGAFVMNNKRELLVVQENNGALKGTGVWKLPTGTIEEGEDICAAAVREVKEETGIDTEFV 185
           V A ++++   +L+ Q   G   G G+W+ P G +E GE    A VRE++EE GI+ E  
Sbjct: 4   VAAIIIDDDGRILIAQRPAGKHLG-GLWEFPGGKVEPGETPEQALVRELREELGIEVEVG 62

Query: 186 EVLA 189
           E+LA
Sbjct: 63  ELLA 66

This enzyme requires two divalent cations for activity; one coordinates the phosphoryl groups of the NTP/dNTP substrate, and the other coordinates to the enzyme. It also contains the Nudix motif, a highly conserved 23-residue block (GX5EX7REUXEEXGU, where U = I, L or V), that functions as metal binding and catalytic site. MutT pyrophosphohydrolase is important in preventing errors in DNA replication by hydrolyzing mutagenic nucleotides such as 8-oxo-dGTP (a product of oxidative damage), which can mispair with template adenine during DNA replication, to guanine nucleotides. Length = 124

>gnl|CDD|240035 cd04679, Nudix_Hydrolase_20, Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

 Score = 49.4 bits (118), Expect = 9e-08
 Identities = 22/67 (32%), Positives = 36/67 (53%), Gaps = 2/67 (2%)

Query: 123 RVGVGAFVMNNKRELLVVQENNGALKGTGVWKLPTGTIEEGEDICAAAVREVKEETGIDT 182
           RVG GA ++ +  +LL+V+       G   W +P G ++  E +  A VRE++EETG+  
Sbjct: 2   RVGCGAAILRDDGKLLLVKRLRAPEAGH--WGIPGGKVDWMEAVEDAVVREIEEETGLSI 59

Query: 183 EFVEVLA 189
               +L 
Sbjct: 60  HSTRLLC 66

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate specificity are determined by the N-terminal extension or by residues in variable loop regions. Mechanistically, substrate hydrolysis occurs by a nucleophilic substitution reaction, with variation in the numbers and roles of divalent cations required. Length = 125

>gnl|CDD|240046 cd04690, Nudix_Hydrolase_31, Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

 Score = 48.8 bits (117), Expect = 1e-07
 Identities = 20/54 (37%), Positives = 31/54 (57%), Gaps = 5/54 (9%)

Query: 128 AFVMNNKRELLVVQENNGALKGTGVWKLPTGTIEEGEDICAAAVREVKEETGID 181
           A ++     +L+V++     +GT V+ LP G IE GE    A +RE+ EE G+D
Sbjct: 5   ALILVRDGRVLLVRK-----RGTDVFYLPGGKIEAGETPLQALIRELSEELGLD 53

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate specificity are determined by the N-terminal extension or by residues in variable loop regions. Mechanistically, substrate hydrolysis occurs by a nucleophilic substitution reaction, with variation in the numbers and roles of divalent cations required. Length = 118

>gnl|CDD|239520 cd03428, Ap4A_hydrolase_human_like, Diadenosine tetraphosphate (Ap4A) hydrolase is a member of the Nudix hydrolase superfamily

 Score = 48.8 bits (117), Expect = 2e-07
 Identities = 32/101 (31%), Positives = 53/101 (52%), Gaps = 12/101 (11%)

Query: 132 NNKRELLVVQENNGALKGTGVWKLPTGTIEEGEDICAAAVREVKEETGIDTEFVEVLA-F 190
           NN+ E L++Q + G       W  P G +E GED   AA+RE +EETGI  E + ++  F
Sbjct: 14  NNEIEYLLLQASYGH------WDFPKGHVEPGEDDLEAALRETEEETGITAEQLFIVLGF 67

Query: 191 RQSHRSFFR---KSDLFFVCMLRPRNFHIQKQDSEIAAAQW 228
           +++     R   K+  +F+  LRP +  ++  + E    +W
Sbjct: 68  KETLNYQVRGKLKTVTYFLAELRP-DVEVKLSE-EHQDYRW 106

Ap4A hydrolases are well represented in a variety of prokaryotic and eukaryotic organisms. Phylogenetic analysis reveals two distinct subgroups where plant enzymes fall into one subfamily and fungi/animals/archaea enzymes, represented by this subfamily, fall into another. Bacterial enzymes are found in both subfamilies. Ap4A is a potential by-product of aminoacyl tRNA synthesis, and accumulation of Ap4A has been implicated in a range of biological events, such as DNA replication, cellular differentiation, heat shock, metabolic stress, and apoptosis. Ap4A hydrolase cleaves Ap4A asymmetrically into ATP and AMP. It is important in the invasive properties of bacteria and thus presents a potential target for inhibition of such invasive bacteria. Besides the signature nudix motif (G[X5]E[X7]REUXEEXGU, where U is Ile, Leu, or Val) that functions as a metal binding and catalytic site, and a required divalent cation, Ap4A hydrolase is structurally similar to the other members of the nudix superfamily with some degree of variation. Several regions in the sequences are poorly defined and substrate and metal binding sites are only predicted based on kinetic studies. Length = 130

>gnl|CDD|223568 COG0494, MutT, NTP pyrophosphohydrolases including oxidative damage repair enzymes [DNA replication, recombination, and repair / General function prediction only]

 Score = 48.3 bits (114), Expect = 4e-07
 Identities = 28/127 (22%), Positives = 51/127 (40%), Gaps = 16/127 (12%)

Query: 122 HRVGVGAFVMNNKRELLVVQENNGALKGTGVWKLPTGTIEEGEDI-CAAAVREVKEETGI 180
                     +   E+L+ Q  +      G+W+LP G +E GE++   AA RE++EETG+
Sbjct: 11  DVAVAVLVGRDGPGEVLLAQRRDDG----GLWELPGGKVEPGEELPEEAAARELEEETGL 66

Query: 181 D-------TEFVEVLAFRQSHRSFFRKSDLFFVC-MLRPRNFHIQKQDS---EIAAAQWM 229
                          +         R+  +FFV  +       I+   +   E+   +W+
Sbjct: 67  RVKDERLELLGEFPPSPGDGSSVGGREHRVFFVAEVDDSLAVAIEGLSAPSEELEDLEWV 126

Query: 230 QAEDYAA 236
             ++ AA
Sbjct: 127 PLDELAA 133

Length = 161

>gnl|CDD|240039 cd04683, Nudix_Hydrolase_24, Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

 Score = 47.4 bits (113), Expect = 4e-07
 Identities = 22/62 (35%), Positives = 28/62 (45%), Gaps = 7/62 (11%)

Query: 151 GVWKLPTGTIEEGEDICAAAVREVKEETGI-----DTEFVEVLAFRQSHRSFFRKSDLFF 205
           G W LP G +E+GED   AAVRE +EE G+     D      +  R        +  LFF
Sbjct: 26  GQWALPAGHLEKGEDAVTAAVREAREEIGVTLDPEDLRLAHTMHRRTEDIE--SRIGLFF 83

Query: 206 VC 207
             
Sbjct: 84  TV 85

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate specificity are determined by the N-terminal extension or by residues in variable loop regions. Mechanistically, substrate hydrolysis occurs by a nucleophilic substitution reaction, with variation in the numbers and roles of divalent cations required. Length = 120

>gnl|CDD|236516 PRK09438, nudB, dihydroneopterin triphosphate pyrophosphatase; Provisional

 Score = 48.0 bits (115), Expect = 5e-07
 Identities = 22/46 (47%), Positives = 26/46 (56%), Gaps = 1/46 (2%)

Query: 151 GVWKLPTGTIEEGEDICAAAVREVKEETGIDTEFVEVLAFRQSHRS 196
             W+  TG++EEGE     A+REVKEETGID    E L      RS
Sbjct: 31  DFWQSVTGSLEEGETPAQTAIREVKEETGIDVL-AEQLTLIDCQRS 75

Length = 148

>gnl|CDD|240043 cd04687, Nudix_Hydrolase_28, Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

 Score = 47.4 bits (113), Expect = 5e-07
 Identities = 33/94 (35%), Positives = 44/94 (46%), Gaps = 14/94 (14%)

Query: 123 RVGVGAFVMNNKRELLVVQENNGALKGTGVW-KLPTGTIEEGEDICAAAVREVKEETGID 181
           R    A ++ N + LL+   ++G     GVW  LP G  E GE +  AA RE KEE GID
Sbjct: 1   RNSAKAVIIKNDKILLIKHHDDG-----GVWYILPGGGQEPGETLEDAAHRECKEEIGID 55

Query: 182 TEFVEVLAFRQ--SHRSF------FRKSDLFFVC 207
            E   +L  R+   H         F + +L F C
Sbjct: 56  VEIGPLLFVREYIGHNPTSELPGHFHQVELMFEC 89

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate specificity are determined by the N-terminal extension or by residues in variable loop regions. Mechanistically, substrate hydrolysis occurs by a nucleophilic substitution reaction, with variation in the numbers and roles of divalent cations required. Length = 128

>gnl|CDD|239516 cd03424, ADPRase_NUDT5, ADP-ribose pyrophosphatase (ADPRase) catalyzes the hydrolysis of ADP-ribose and a variety of additional ADP-sugar conjugates to AMP and ribose-5-phosphate

 Score = 47.5 bits (114), Expect = 6e-07
 Identities = 20/64 (31%), Positives = 36/64 (56%), Gaps = 1/64 (1%)

Query: 125 GVGAFVMNNKRELLVVQENNGALKGTGVWKLPTGTIEEGEDICAAAVREVKEETGIDTEF 184
            V     ++  ++++V++    + G  + +LP G I+ GED   AA RE++EETG +   
Sbjct: 4   AVAVLPYDDDGKVVLVRQYRPPVGGW-LLELPAGLIDPGEDPEEAARRELEEETGYEAGD 62

Query: 185 VEVL 188
           +E L
Sbjct: 63  LEKL 66

Like other members of the Nudix hydrolase superfamily, it requires a divalent cation, such as Mg2+, for its activity. It also contains a highly conserved 23-residue Nudix motif (GX5EX7REUXEEXGU, where U = I, L or V) which functions as a metal binding site/catalytic site. In addition to the Nudix motif, there are additional conserved amino acid residues, distal from the signature sequence, that correlate with substrate specificity. In humans, there are four distinct ADPRase activities, three putative cytosolic enzymes (ADPRase-I, -II, and -Mn) and a single mitochondrial enzyme (ADPRase-m). Human ADPRase-II is also referred to as NUDT5. It lacks the N-terminal target sequence unique to mitochondrial ADPRase. The different cytosolic types are distinguished by their specificities for substrate and specific requirement for metal ions. NUDT5 forms a homodimer. Length = 137

>gnl|CDD|239646 cd03674, Nudix_Hydrolase_1, Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

 Score = 47.0 bits (112), Expect = 9e-07
 Identities = 16/43 (37%), Positives = 24/43 (55%)

Query: 151 GVWKLPTGTIEEGEDICAAAVREVKEETGIDTEFVEVLAFRQS 193
           G W  P G I+  E +  AA+RE++EETGI+   +  L+    
Sbjct: 26  GSWLQPGGHIDPDESLLEAALRELREETGIELLGLRPLSVLVD 68

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity. They also contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, U=I, L or V), which forms a structural motif that functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate specificity are determined by the N-terminal extension or by residues in variable loop regions. Mechanistically, substrate hydrolysis occurs by a nucleophilic substitution reaction, with variation in the numbers and roles of divalent cations required. Length = 138

>gnl|CDD|240023 cd04665, Nudix_Hydrolase_8, Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

 Score = 46.2 bits (110), Expect = 1e-06
 Identities = 21/61 (34%), Positives = 32/61 (52%), Gaps = 6/61 (9%)

Query: 134 KRELLVVQENNGALKGTGVWKLPTGTIEEGEDICAAAVREVKEETGIDTEFVEVLAFRQS 193
              LL+V+  +   +G   W+ P G +E GE I  AA REV EETG +   + ++ + Q 
Sbjct: 10  DDGLLLVRHKD---RG---WEFPGGHVEPGETIEEAARREVWEETGAELGSLTLVGYYQV 63

Query: 194 H 194
            
Sbjct: 64  D 64

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate specificity are determined by the N-terminal extension or by residues in variable loop regions. Mechanistically, substrate hydrolysis occurs by a nucleophilic substitution reaction, with variation in the numbers and roles of divalent cations required. Length = 118

>gnl|CDD|240038 cd04682, Nudix_Hydrolase_23, Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

 Score = 45.8 bits (109), Expect = 2e-06
 Identities = 26/93 (27%), Positives = 37/93 (39%), Gaps = 1/93 (1%)

Query: 151 GVWKLPTGTIEEGEDICAAAVREVKEETGIDTEFVEVLAFRQSHRSFFRKSDLFFVCMLR 210
           G W LP G  E GE      +RE+ EE G+      +  FR    +    ++  FV  L 
Sbjct: 29  GHWDLPGGHREGGETPLECVLRELLEEIGLTLPESRIPWFRVYPSASPPGTEHVFVVPLT 88

Query: 211 PRNFHIQKQDSEIAAAQWMQAEDYAAQPYVLKH 243
            R   I   D E  A + M  E++ A    +  
Sbjct: 89  AREDAILFGD-EGQALRLMTVEEFLAHEDAIPQ 120

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate specificity are determined by the N-terminal extension or by residues in variable loop regions. Mechanistically, substrate hydrolysis occurs by a nucleophilic substitution reaction, with variation in the numbers and roles of divalent cations required. Length = 122

>gnl|CDD|240026 cd04669, Nudix_Hydrolase_11, Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

 Score = 45.5 bits (108), Expect = 2e-06
 Identities = 21/75 (28%), Positives = 34/75 (45%), Gaps = 6/75 (8%)

Query: 128 AFVMNNKRELLVVQENNGALKGTGVWKLPTGTIEEGEDICAAAVREVKEETGID---TEF 184
             ++N++ E+L+++       G   +  P G IEEGE    AA RE  EE G+D    E 
Sbjct: 5   IVIINDQGEILLIRRIKP---GKTYYVFPGGGIEEGETPEEAAKREALEELGLDVRVEEI 61

Query: 185 VEVLAFRQSHRSFFR 199
             ++        +F 
Sbjct: 62  FLIVNQNGRTEHYFL 76

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate specificity are determined by the N-terminal extension or by residues in variable loop regions. Mechanistically, substrate hydrolysis occurs by a nucleophilic substitution reaction, with variation in the numbers and roles of divalent cations required. Length = 121

>gnl|CDD|215184 PLN02325, PLN02325, nudix hydrolase

 Score = 45.2 bits (107), Expect = 5e-06
 Identities = 25/66 (37%), Positives = 36/66 (54%), Gaps = 3/66 (4%)

Query: 123 RVGVGAFVMNNKRELLVVQENNGALKGTGVWKLPTGTIEEGEDICAAAVREVKEETGIDT 182
           RV V  F++     LL  + ++    G   + LP G +E GE     A REVKEETG++ 
Sbjct: 9   RVAVVVFLLKGNSVLLGRRRSS---IGDSTFALPGGHLEFGESFEECAAREVKEETGLEI 65

Query: 183 EFVEVL 188
           E +E+L
Sbjct: 66  EKIELL 71

Length = 144

>gnl|CDD|239519 cd03427, MTH1, MutT homolog-1 (MTH1) is a member of the Nudix hydrolase superfamily

 Score = 44.9 bits (107), Expect = 5e-06
 Identities = 19/52 (36%), Positives = 29/52 (55%), Gaps = 3/52 (5%)

Query: 129 FVMNNKRELLVVQENNGALKGTGVWKLPTGTIEEGEDICAAAVREVKEETGI 180
           F+ +  + +L++    G   G G W  P G +E GE     A+RE+KEETG+
Sbjct: 7   FIKDPDK-VLLLNRKKG--PGWGGWNGPGGKVEPGETPEECAIRELKEETGL 55

MTH1, the mammalian counterpart of MutT, hydrolyzes oxidized purine nucleoside triphosphates, such as 8-oxo-dGTP and 2-hydroxy-ATP, to monophosphates, thereby preventing the incorporation of such oxygen radicals during replication. This is an important step in the repair mechanism in genomic and mitochondrial DNA. Like other members of the Nudix family, it requires a divalent cation, such as Mg2+ or Mn2+, for activity, and contain the Nudix motif, a highly conserved 23-residue block (GX5EX7REUXEEXGU, where U = I, L or V), that functions as a metal binding and catalytic site. MTH1 is predominantly localized in the cytoplasm and mitochondria. Structurally, this enzyme adopts a similar fold to MutT despite low sequence similarity outside the conserved nudix motif. The most distinctive structural difference between MutT and MTH1 is the presence of a beta-hairpin, which is absent in MutT. This results in a much deeper and narrower substrate binding pocket. Mechanistically, MTH1 contains dual specificity for nucleotides that contain 2-OH-adenine bases and those that contain 8-oxo-guanine bases. Length = 137

>gnl|CDD|240031 cd04674, Nudix_Hydrolase_16, Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

 Score = 44.0 bits (104), Expect = 7e-06
 Identities = 21/55 (38%), Positives = 28/55 (50%), Gaps = 2/55 (3%)

Query: 137 LLVVQENNGALKGTGVWKLPTGTIEEGEDICAAAVREVKEETGIDTEFVEVLAFR 191
           LLV++   G   G G   LP G IE GE    A  RE+ EETG+  +  ++  F 
Sbjct: 17  LLVIRR--GIEPGRGKLALPGGFIELGETWQDAVARELLEETGVAVDPADIRLFD 69

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate specificity are determined by the N-terminal extension or by residues in variable loop regions. Mechanistically, substrate hydrolysis occurs by a nucleophilic substitution reaction, with variation in the numbers and roles of divalent cations required. Length = 118

>gnl|CDD|240044 cd04688, Nudix_Hydrolase_29, Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

 Score = 44.2 bits (105), Expect = 8e-06
 Identities = 23/76 (30%), Positives = 36/76 (47%), Gaps = 9/76 (11%)

Query: 123 RVGVGAFVMNNKRELLVVQENNGALKGTGVWKLPTGTIEEGEDICAAAVREVKEETGIDT 182
           +V   A +++N +  L+VQ+N         ++ P G IE GE    A +RE KEE G+  
Sbjct: 1   KVRAAAIIIHNGK--LLVQKN----PDETFYRPPGGGIEFGESSEEALIREFKEELGLKI 54

Query: 183 EFVEVLAFRQSHRSFF 198
           E   +L       + F
Sbjct: 55  EITRLLGV---VENIF 67

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate specificity are determined by the N-terminal extension or by residues in variable loop regions. Mechanistically, substrate hydrolysis occurs by a nucleophilic substitution reaction, with variation in the numbers and roles of divalent cations required. Length = 126

>gnl|CDD|239644 cd03672, Dcp2p, mRNA decapping enzyme 2 (Dcp2p), the catalytic subunit, and Dcp1p are the two components of the decapping enzyme complex

 Score = 43.8 bits (104), Expect = 1e-05
 Identities = 21/56 (37%), Positives = 29/56 (51%), Gaps = 6/56 (10%)

Query: 127 GAFVMNNKRE-LLVVQENNGALKGTGVWKLPTGTIEEGEDICAAAVREVKEETGID 181
           GA ++N   + +L+V+      K    W  P G I + ED    A+REV EETG D
Sbjct: 5   GAIILNEDLDKVLLVKG----WKSKS-WSFPKGKINKDEDDHDCAIREVYEETGFD 55

Decapping is a key step in both general and nonsense-mediated 5'->3' mRNA-decay pathways. Dcp2p contains an all-alpha helical N-terminal domain and a C-terminal domain which has the Nudix fold. While decapping is not dependent on the N-terminus of Dcp2p, it does affect its efficiency. Dcp1p binds the N-terminal domain of Dcp2p stimulating the decapping activity of Dcp2p. Decapping permits the degradation of the transcript and is a site of numerous control inputs. It is responsible for nonsense-mediated decay as well as AU-rich element (ARE)-mediated decay. In addition, it may also play a role in the levels of mRNA. Enzymes belonging to the Nudix superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and are recognized by a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V). Length = 145

>gnl|CDD|240053 cd04697, Nudix_Hydrolase_38, Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

 Score = 42.8 bits (101), Expect = 2e-05
 Identities = 25/128 (19%), Positives = 45/128 (35%), Gaps = 9/128 (7%)

Query: 129 FVMNNKRELLVVQENNGALKGTGVWKLPTG-TIEEGEDICAAAVREVKEETGID-TEFVE 186
           FV N++ +L V +         G W +  G  ++ GE     A RE++EE GID  +   
Sbjct: 6   FVFNSEGKLCVHKRTLTKDWCPGYWDIAFGGVVQAGESYLQNAQRELEEELGIDGVQLTP 65

Query: 187 VLAFRQSHRSFFRKSDLFFVCMLRPRNFHIQKQDSEIAAAQWMQAEDYAAQPYVLKHQMF 246
           +  F            +F      P    ++ Q+ E+    W+   +        + +  
Sbjct: 66  LGLFYYDTDGNRVWGKVFSCVYDGP----LKLQEEEVEEITWLSINEILQF---KEGENI 118

Query: 247 NYICQICL 254
                  L
Sbjct: 119 TPDSLSAL 126

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate specificity are determined by the N-terminal extension or by residues in variable loop regions. Mechanistically, substrate hydrolysis occurs by a nucleophilic substitution reaction, with variation in the numbers and roles of divalent cations required. Length = 126

>gnl|CDD|240025 cd04667, Nudix_Hydrolase_10, Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

 Score = 42.3 bits (100), Expect = 2e-05
 Identities = 16/29 (55%), Positives = 19/29 (65%)

Query: 153 WKLPTGTIEEGEDICAAAVREVKEETGID 181
           W LP G IE GE    AA RE++EETG+ 
Sbjct: 23  WALPGGKIEPGETPLQAARRELQEETGLQ 51

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate specificity are determined by the N-terminal extension or by residues in variable loop regions. Mechanistically, substrate hydrolysis occurs by a nucleophilic substitution reaction, with variation in the numbers and roles of divalent cations required. Length = 112

>gnl|CDD|225373 COG2816, NPY1, NTP pyrophosphohydrolases containing a Zn-finger, probably nucleic-acid-binding [DNA replication, recombination, and repair]

 Score = 43.9 bits (104), Expect = 4e-05
 Identities = 23/83 (27%), Positives = 33/83 (39%), Gaps = 14/83 (16%)

Query: 151 GVWKLPTGTIEEGEDICAAAVREVKEETGIDTEFVEVLA-----FRQSHRSFFRKSDLFF 205
           G++ L  G +E GE +  A  REV EE GI  + V  +      F  S         L  
Sbjct: 168 GMYSLLAGFVEPGETLEQAVAREVFEEVGIKVKNVRYVGSQPWPFPHS---------LML 218

Query: 206 VCMLRPRNFHIQKQDSEIAAAQW 228
             M    +  I   + E+  A+W
Sbjct: 219 GFMAEYDSGEITPDEGELEDARW 241

Length = 279

>gnl|CDD|240052 cd04696, Nudix_Hydrolase_37, Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

 Score = 41.7 bits (98), Expect = 5e-05
 Identities = 21/70 (30%), Positives = 36/70 (51%), Gaps = 4/70 (5%)

Query: 124 VGVGAFVMNNKRELLVVQENNGALKGTGVWKLPTGTIEEGEDICAAAVREVKEETGIDTE 183
           V VGA +      +L+V+      K  G+W +P G +E GE +  A  RE +EETG+   
Sbjct: 3   VTVGALIYAPDGRILLVRTT----KWRGLWGVPGGKVEWGETLEEALKREFREETGLKLR 58

Query: 184 FVEVLAFRQS 193
            ++    +++
Sbjct: 59  DIKFAMVQEA 68

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate specificity are determined by the N-terminal extension or by residues in variable loop regions. Mechanistically, substrate hydrolysis occurs by a nucleophilic substitution reaction, with variation in the numbers and roles of divalent cations required. Length = 125

>gnl|CDD|240020 cd04662, Nudix_Hydrolase_5, Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

 Score = 41.3 bits (97), Expect = 6e-05
 Identities = 22/50 (44%), Positives = 29/50 (58%), Gaps = 2/50 (4%)

Query: 146 ALKGTGVWKLPTGTIEEGEDICAAAVREVKEETG--IDTEFVEVLAFRQS 193
           A K  G W +P G   EGED   AA RE  EETG  +D  F+++ + +QS
Sbjct: 28  ANKDLGAWSIPKGEYTEGEDPLLAAKREFSEETGFCVDGPFIDLGSLKQS 77

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate specificity are determined by the N-terminal extension or by residues in variable loop regions. Mechanistically, substrate hydrolysis occurs by a nucleophilic substitution reaction, with variation in the numbers and roles of divalent cations required. Length = 126

>gnl|CDD|182721 PRK10776, PRK10776, nucleoside triphosphate pyrophosphohydrolase; Provisional

 Score = 41.5 bits (98), Expect = 6e-05
 Identities = 23/76 (30%), Positives = 34/76 (44%), Gaps = 5/76 (6%)

Query: 123 RVGVGAFVMNNKRELLVVQENNGALKGTGVWKLPTGTIEEGEDICAAAVREVKEETGIDT 182
           ++ VG  + N   E+ + +    A    G W+ P G IE GE    A +RE++EE GI  
Sbjct: 5   QIAVG-IIRNPNNEIFITRRAADAHMA-GKWEFPGGKIEAGETPEQALIRELQEEVGITV 62

Query: 183 ---EFVEVLAFRQSHR 195
                 E L +    R
Sbjct: 63  QHATLFEKLEYEFPDR 78

Length = 129

>gnl|CDD|239518 cd03426, CoAse, Coenzyme A pyrophosphatase (CoAse), a member of the Nudix hydrolase superfamily, functions to catalyze the elimination of oxidized inactive CoA, which can inhibit CoA-utilizing enzymes

 Score = 41.4 bits (98), Expect = 1e-04
 Identities = 16/35 (45%), Positives = 22/35 (62%), Gaps = 1/35 (2%)

Query: 155 LPTGTIEEG-EDICAAAVREVKEETGIDTEFVEVL 188
            P G ++ G ED  A A+RE +EE G+  + VEVL
Sbjct: 36  FPGGKVDPGDEDPVATALREAEEEIGLPPDSVEVL 70

The need of CoAses mainly arises under conditions of oxidative stress. CoAse has a conserved Nudix fold and requires a single divalent cation for catalysis. In addition to a signature Nudix motif G[X5]E[X7]REUXEEXGU, where U is Ile, Leu, or Val, CoAse contains an additional motif upstream called the NuCoA motif (LLTXT(SA)X3RX3GX3FPGG) which is postulated to be involved in CoA recognition. CoA plays a central role in lipid metabolism. It is involved in the initial steps of fatty acid sythesis in the cytosol, in the oxidation of fatty acids and the citric acid cycle in the mitochondria, and in the oxidation of long-chain fatty acids in peroxisomes. CoA has the important role of activating fatty acids for further modification into key biological signalling molecules. Length = 157

>gnl|CDD|240042 cd04686, Nudix_Hydrolase_27, Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

 Score = 40.8 bits (96), Expect = 1e-04
 Identities = 17/63 (26%), Positives = 28/63 (44%), Gaps = 8/63 (12%)

Query: 153 WKLPTGTIEEGEDICAAAVREVKEETG-----IDTEFVEVLAFRQSH---RSFFRKSDLF 204
           +K P G +E+GED     +RE++EETG     +  +F      R         F     +
Sbjct: 24  YKFPGGGVEKGEDHIEGLIRELQEETGATNIRVIEKFGTYTERRPWRKPDADIFHMISYY 83

Query: 205 FVC 207
           ++C
Sbjct: 84  YLC 86

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate specificity are determined by the N-terminal extension or by residues in variable loop regions. Mechanistically, substrate hydrolysis occurs by a nucleophilic substitution reaction, with variation in the numbers and roles of divalent cations required. Length = 131

>gnl|CDD|235436 PRK05379, PRK05379, bifunctional nicotinamide mononucleotide adenylyltransferase/ADP-ribose pyrophosphatase; Provisional

 Score = 42.3 bits (100), Expect = 1e-04
 Identities = 23/59 (38%), Positives = 33/59 (55%), Gaps = 3/59 (5%)

Query: 123 RVGVGAFVMNNKRELLVVQENNGALKGTGVWKLPTGTIEEGEDICAAAVREVKEETGID 181
            V V A V+ +   LLV      A  G G+W LP G +E+ E +  A +RE++EETG+ 
Sbjct: 203 FVTVDAVVVQSGHVLLV---RRRAEPGKGLWALPGGFLEQDETLLDACLRELREETGLK 258

Length = 340

>gnl|CDD|240021 cd04663, Nudix_Hydrolase_6, Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

 Score = 40.2 bits (94), Expect = 2e-04
 Identities = 13/27 (48%), Positives = 21/27 (77%)

Query: 154 KLPTGTIEEGEDICAAAVREVKEETGI 180
           ++  GT+E GE   AAA+RE++EE+G+
Sbjct: 27  QIVKGTVEPGETPEAAALRELQEESGL 53

Enzymes belong to this superfamily requires a divalent cation, such as Mg2+ or Mn2+ for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, U=I, L or V) which functions as metal binding and catalytic site. Substrates of nudix hydrolase include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate specificity are determined by the N-terminal extension or by residues in variable loop regions. Mechanistically, substrate hydrolysis occurs by a nucleophilic substitution reaction, with variation in the numbers and roles of divalent cations required. Length = 126

>gnl|CDD|239948 cd04511, Nudix_Hydrolase_4, Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

 Score = 39.9 bits (94), Expect = 2e-04
 Identities = 21/80 (26%), Positives = 30/80 (37%), Gaps = 14/80 (17%)

Query: 151 GVWKLPTGTIEEGEDICAAAVREVKEETGIDTEFVEVLA------FRQSHRSFFRKSDLF 204
           G W LP G +E GE     A+RE  EE G   E   + A        Q +        +F
Sbjct: 38  GFWTLPAGFMENGETTEQGALRETWEEAGARVEIDGLYAVYSVPHISQVY--------MF 89

Query: 205 FVCMLRPRNFHIQKQDSEIA 224
           +   L   +F    +  E+ 
Sbjct: 90  YRARLLDLDFAPGPESLEVR 109

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, U=I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate specificity are determined by the N-terminal extension or by residues in variable loop regions. Mechanistically, substrate hydrolysis occurs by a nucleophilic substitution reaction, with variation in the numbers and roles of divalent cations required. Length = 130

>gnl|CDD|240041 cd04685, Nudix_Hydrolase_26, Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

 Score = 39.7 bits (93), Expect = 3e-04
 Identities = 17/44 (38%), Positives = 26/44 (59%)

Query: 137 LLVVQENNGALKGTGVWKLPTGTIEEGEDICAAAVREVKEETGI 180
           +L+++ ++    G   W  P G +E GE    AA RE++EETGI
Sbjct: 14  VLLLRGDDPDSPGPDWWFTPGGGVEPGESPEQAARRELREETGI 57

Enzymes belonging to this superfamily requires a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate specificity are determined by the N-terminal extension or by residues in variable loop regions. Mechanistically, substrate hydrolysis occurs by a nucleophilic substitution reaction, with variation in the numbers and roles of divalent cations required. Length = 133

>gnl|CDD|240049 cd04693, Nudix_Hydrolase_34, Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

 Score = 38.9 bits (91), Expect = 4e-04
 Identities = 28/111 (25%), Positives = 51/111 (45%), Gaps = 7/111 (6%)

Query: 126 VGAFVMNNKRELLVVQENNGALKGTGVWKLPTGTIEEGEDICAAAVREVKEETGIDTEFV 185
           V   + N+K ELL+ + +       G+W L  G   +  +   AA REVKEE G++ +F 
Sbjct: 3   VHVCIFNSKGELLLQKRSPNKDGWPGMWDLSVGGHVQAGETSTAAEREVKEELGLELDFS 62

Query: 186 EVLAFRQSHRSFFRKSDLFFVCMLRPRNFHIQK---QDSEIAAAQWMQAED 233
           E+         +F +++ F    L   +  I K   Q  E+   +++  ++
Sbjct: 63  ELRPL----FRYFFEAEGFDDYYLFYADVEIGKLILQKEEVDEVKFVSKDE 109

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate specificity are determined by the N-terminal extension or by residues in variable loop regions. Mechanistically, substrate hydrolysis occurs by a nucleophilic substitution reaction, with variation in the numbers and roles of divalent cations required. Length = 127

>gnl|CDD|240051 cd04695, Nudix_Hydrolase_36, Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

 Score = 39.0 bits (91), Expect = 5e-04
 Identities = 16/33 (48%), Positives = 19/33 (57%)

Query: 151 GVWKLPTGTIEEGEDICAAAVREVKEETGIDTE 183
           G W    G +E GE    AA+RE+KEETGI   
Sbjct: 27  GFWCHVAGGVEAGETAWQAALRELKEETGISLP 59

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate specificity are determined by the N-terminal extension or by residues in variable loop regions. Mechanistically, substrate hydrolysis occurs by a nucleophilic substitution reaction, with variation in the numbers and roles of divalent cations required. Length = 131

>gnl|CDD|236361 PRK08999, PRK08999, hypothetical protein; Provisional

 Score = 39.9 bits (94), Expect = 9e-04
 Identities = 14/31 (45%), Positives = 21/31 (67%)

Query: 151 GVWKLPTGTIEEGEDICAAAVREVKEETGID 181
           G+W+ P G +E GE +  A  RE++EE GI+
Sbjct: 32  GLWEFPGGKVEPGETVEQALARELQEELGIE 62

Length = 312

>gnl|CDD|226604 COG4119, COG4119, Predicted NTP pyrophosphohydrolase [DNA replication, recombination, and repair / General function prediction only]

 Score = 38.4 bits (89), Expect = 0.001
 Identities = 20/50 (40%), Positives = 26/50 (52%), Gaps = 2/50 (4%)

Query: 146 ALKGTGVWKLPTGTIEEGEDICAAAVREVKEETGI--DTEFVEVLAFRQS 193
           A K  G W +P G    GED   AA RE  EE GI  D   +++ + +QS
Sbjct: 31  AGKDDGAWSIPKGEYTGGEDPWLAARREFSEEIGICVDGPRIDLGSLKQS 80

Length = 161

>gnl|CDD|240050 cd04694, Nudix_Hydrolase_35, Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

 Score = 37.8 bits (88), Expect = 0.001
 Identities = 19/57 (33%), Positives = 33/57 (57%)

Query: 124 VGVGAFVMNNKRELLVVQENNGALKGTGVWKLPTGTIEEGEDICAAAVREVKEETGI 180
           VGV   + ++ ++LL+ +  +       VW  P G +E GE++  A +RE+ EETG+
Sbjct: 2   VGVAVLLQSSDQKLLLTRRASSLRIFPNVWVPPGGHVELGENLLEAGLRELNEETGL 58

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate specificity are determined by the N-terminal extension or by residues in variable loop regions. Mechanistically, substrate hydrolysis occurs by a nucleophilic substitution reaction, with variation in the numbers and roles of divalent cations required. Length = 143

>gnl|CDD|240048 cd04692, Nudix_Hydrolase_33, Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

 Score = 37.3 bits (87), Expect = 0.002
 Identities = 19/88 (21%), Positives = 36/88 (40%), Gaps = 11/88 (12%)

Query: 158 GTIEEGEDICAAAVREVKEETGID---TEFVEVLAFRQS--HRSFFRK---SDLFFVCML 209
           G I  GE      +RE++EE G+D    + + +  F+    H           ++   + 
Sbjct: 41  GHILAGETPLEDGIRELEEELGLDVSADDLIPLGTFKIEYDHIGKLIDREFHHVYLYELK 100

Query: 210 RPRN-FHIQKQDSEIAAAQWMQAEDYAA 236
            P   F +QK   E+A    +  +++A 
Sbjct: 101 VPLEEFTLQK--EEVAGVVLIPLDEFAE 126

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate specificity are determined by the N-terminal extension or by residues in variable loop regions. Mechanistically, substrate hydrolysis occurs by a nucleophilic substitution reaction, with variation in the numbers and roles of divalent cations required. Length = 144

>gnl|CDD|239521 cd03429, NADH_pyrophosphatase, NADH pyrophosphatase, a member of the Nudix hydrolase superfamily, catalyzes the cleavage of NADH into reduced nicotinamide mononucleotide (NMNH) and AMP

 Score = 37.1 bits (87), Expect = 0.002
 Identities = 22/84 (26%), Positives = 32/84 (38%), Gaps = 14/84 (16%)

Query: 158 GTIEEGEDICAAAVREVKEETGIDTEFVEVLA-----FRQSHRSFFRKSDLFFVCMLRPR 212
           G +E GE +  A  REVKEE GI  + +  +      F  S         L         
Sbjct: 32  GFVEPGESLEEAVRREVKEEVGIRVKNIRYVGSQPWPFPSS---------LMLGFTAEAD 82

Query: 213 NFHIQKQDSEIAAAQWMQAEDYAA 236
           +  I   D E+  A+W   ++  A
Sbjct: 83  SGEIVVDDDELEDARWFSRDEVRA 106

Like other members of the Nudix family, it requires a divalent cation, such as Mg2+ or Mn2+, for activity. Members of this family are also recognized by the Nudix motif, a highly conserved 23-residue block (GX5EX7REUXEEXGU, where U = I, L or V), that functions as a metal binding and catalytic site. A block of 8 conserved amino acids downstream of the nudix motif is thought to give NADH pyrophosphatase its specificity for NADH. NADH pyrophosphatase forms a dimer. Length = 131

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	275
KOG0648	295	consensus Predicted NUDIX hydrolase FGF-2 and rela	100.0
cd04670	127	Nudix_Hydrolase_12 Members of the Nudix hydrolase	99.9
PRK00714	156	RNA pyrophosphohydrolase; Reviewed	99.86
cd04679	125	Nudix_Hydrolase_20 Members of the Nudix hydrolase	99.86
cd03671	147	Ap4A_hydrolase_plant_like Diadenosine tetraphospha	99.86
cd03430	144	GDPMH GDP-mannose glycosyl hydrolase (AKA GDP-mann	99.86
cd03424	137	ADPRase_NUDT5 ADP-ribose pyrophosphatase (ADPRase)	99.85
PRK15434	159	GDP-mannose mannosyl hydrolase NudD; Provisional	99.85
PRK11762	185	nudE adenosine nucleotide hydrolase NudE; Provisio	99.85
PRK09438	148	nudB dihydroneopterin triphosphate pyrophosphatase	99.85
cd04680	120	Nudix_Hydrolase_21 Members of the Nudix hydrolase	99.84
cd04700	142	DR1025_like DR1025 from Deinococcus radiodurans, a	99.84
PF00293	134	NUDIX: NUDIX domain; InterPro: IPR000086 The gener	99.84
cd04678	129	Nudix_Hydrolase_19 Members of the Nudix hydrolase	99.84
cd03673	131	Ap6A_hydrolase Diadenosine hexaphosphate (Ap6A) hy	99.84
cd04682	122	Nudix_Hydrolase_23 Members of the Nudix hydrolase	99.84
cd04684	128	Nudix_Hydrolase_25 Contains a crystal structure of	99.83
cd04673	122	Nudix_Hydrolase_15 Members of the Nudix hydrolase	99.83
cd04669	121	Nudix_Hydrolase_11 Members of the Nudix hydrolase	99.83
PLN02325	144	nudix hydrolase	99.83
cd03675	134	Nudix_Hydrolase_2 Contains a crystal structure of	99.83
cd04696	125	Nudix_Hydrolase_37 Members of the Nudix hydrolase	99.83
cd03674	138	Nudix_Hydrolase_1 Members of the Nudix hydrolase s	99.83
cd03672	145	Dcp2p mRNA decapping enzyme 2 (Dcp2p), the catalyt	99.83
cd04683	120	Nudix_Hydrolase_24 Members of the Nudix hydrolase	99.82
cd04697	126	Nudix_Hydrolase_38 Members of the Nudix hydrolase	99.82
cd03426	157	CoAse Coenzyme A pyrophosphatase (CoAse), a member	99.82
cd04681	130	Nudix_Hydrolase_22 Members of the Nudix hydrolase	99.82
PRK15472	141	nucleoside triphosphatase NudI; Provisional	99.82
cd03427	137	MTH1 MutT homolog-1 (MTH1) is a member of the Nudi	99.82
PRK10729	202	nudF ADP-ribose pyrophosphatase NudF; Provisional	99.81
cd04691	117	Nudix_Hydrolase_32 Members of the Nudix hydrolase	99.81
cd04677	132	Nudix_Hydrolase_18 Members of the Nudix hydrolase	99.81
cd04687	128	Nudix_Hydrolase_28 Members of the Nudix hydrolase	99.81
cd04671	123	Nudix_Hydrolase_13 Members of the Nudix hydrolase	99.81
cd04699	129	Nudix_Hydrolase_39 Members of the Nudix hydrolase	99.81
PRK10546	135	pyrimidine (deoxy)nucleoside triphosphate pyrophos	99.81
cd03429	131	NADH_pyrophosphatase NADH pyrophosphatase, a membe	99.8
cd04676	129	Nudix_Hydrolase_17 Members of the Nudix hydrolase	99.8
cd04672	123	Nudix_Hydrolase_14 Members of the Nudix hydrolase	99.8
PRK15393	180	NUDIX hydrolase YfcD; Provisional	99.79
cd04693	127	Nudix_Hydrolase_34 Members of the Nudix hydrolase	99.79
PRK10776	129	nucleoside triphosphate pyrophosphohydrolase; Prov	99.79
PRK00241	256	nudC NADH pyrophosphatase; Reviewed	99.79
cd04690	118	Nudix_Hydrolase_31 Members of the Nudix hydrolase	99.79
cd04692	144	Nudix_Hydrolase_33 Members of the Nudix hydrolase	99.79
cd04688	126	Nudix_Hydrolase_29 Members of the Nudix hydrolase	99.79
cd04689	125	Nudix_Hydrolase_30 Members of the Nudix hydrolase	99.79
cd04664	129	Nudix_Hydrolase_7 Members of the Nudix hydrolase s	99.78
TIGR00052	185	nudix-type nucleoside diphosphatase, YffH/AdpP fam	99.78
cd04511	130	Nudix_Hydrolase_4 Members of the Nudix hydrolase s	99.78
cd03428	130	Ap4A_hydrolase_human_like Diadenosine tetraphospha	99.78
COG1051	145	ADP-ribose pyrophosphatase [Nucleotide transport a	99.78
cd04686	131	Nudix_Hydrolase_27 Members of the Nudix hydrolase	99.78
cd04694	143	Nudix_Hydrolase_35 Members of the Nudix hydrolase	99.77
TIGR00586	128	mutt mutator mutT protein. All proteins in this fa	99.77
cd03425	124	MutT_pyrophosphohydrolase The MutT pyrophosphohydr	99.77
cd04695	131	Nudix_Hydrolase_36 Members of the Nudix hydrolase	99.77
PRK03759	184	isopentenyl-diphosphate delta-isomerase; Provision	99.77
cd04666	122	Nudix_Hydrolase_9 Members of the Nudix hydrolase s	99.77
PRK15009	191	GDP-mannose pyrophosphatase NudK; Provisional	99.77
cd02885	165	IPP_Isomerase Isopentenyl diphosphate (IPP) isomer	99.76
cd04667	112	Nudix_Hydrolase_10 Members of the Nudix hydrolase	99.76
PRK10707	190	putative NUDIX hydrolase; Provisional	99.73
cd04685	133	Nudix_Hydrolase_26 Members of the Nudix hydrolase	99.72
TIGR02150	158	IPP_isom_1 isopentenyl-diphosphate delta-isomerase	99.72
PRK05379	340	bifunctional nicotinamide mononucleotide adenylylt	99.71
cd02883	123	Nudix_Hydrolase Nudix hydrolase is a superfamily o	99.71
PLN03143	291	nudix hydrolase; Provisional	99.68
cd04661	132	MRP_L46 Mitochondrial ribosomal protein L46 (MRP L	99.68
cd03676	180	Nudix_hydrolase_3 Members of the Nudix hydrolase s	99.67
TIGR02705	156	nudix_YtkD nucleoside triphosphatase YtkD. The fun	99.67
PRK08999	312	hypothetical protein; Provisional	99.65
cd04665	118	Nudix_Hydrolase_8 Members of the Nudix hydrolase s	99.63
cd04662	126	Nudix_Hydrolase_5 Members of the Nudix hydrolase s	99.63
cd04674	118	Nudix_Hydrolase_16 Members of the Nudix hydrolase	99.62
PLN02709	222	nudix hydrolase	99.59
COG2816	279	NPY1 NTP pyrophosphohydrolases containing a Zn-fin	99.59
PLN02552	247	isopentenyl-diphosphate delta-isomerase	99.58
cd04663	126	Nudix_Hydrolase_6 Members of the Nudix hydrolase s	99.54
KOG3084	345	consensus NADH pyrophosphatase I of the Nudix fami	99.51
PLN02791	770	Nudix hydrolase homolog	99.47
cd03670	186	ADPRase_NUDT9 ADP-ribose pyrophosphatase (ADPRase)	99.44
KOG2839	145	consensus Diadenosine and diphosphoinositol polyph	99.4
COG0494	161	MutT NTP pyrophosphohydrolases including oxidative	99.4
KOG3041	225	consensus Nucleoside diphosphate-sugar hydrolase o	99.32
cd03431	118	DNA_Glycosylase_C DNA glycosylase (MutY in bacteri	99.29
KOG3069	246	consensus Peroxisomal NUDIX hydrolase [Replication	99.11
COG1443	185	Idi Isopentenyldiphosphate isomerase [Lipid metabo	99.08
PF14815	114	NUDIX_4: NUDIX domain; PDB: 1VRL_A 1RRQ_A 3G0Q_A 3	98.99
PLN02839	372	nudix hydrolase	98.79
COG4119	161	Predicted NTP pyrophosphohydrolase [DNA replicatio	98.77
KOG0142	225	consensus Isopentenyl pyrophosphate:dimethylallyl	98.2
COG4112	203	Predicted phosphoesterase (MutT family) [General f	97.87
PRK10880	350	adenine DNA glycosylase; Provisional	97.69
KOG2937	348	consensus Decapping enzyme complex, predicted pyro	97.68
KOG4195	275	consensus Transient receptor potential-related cha	97.52
KOG4432	405	consensus Uncharacterized NUDIX family hydrolase [	97.4
KOG4432	405	consensus Uncharacterized NUDIX family hydrolase [	97.33
PRK13910	289	DNA glycosylase MutY; Provisional	96.31
PF13869	188	NUDIX_2: Nucleotide hydrolase; PDB: 3MDG_B 2J8Q_B	94.74
COG1194	342	MutY A/G-specific DNA glycosylase [DNA replication	94.7
KOG4313	306	consensus Thiamine pyrophosphokinase [Nucleotide t	94.38
KOG1689	221	consensus mRNA cleavage factor I subunit [RNA proc	94.31
KOG4548	263	consensus Mitochondrial ribosomal protein L17 [Tra	93.34
TIGR01084	275	mutY A/G-specific adenine glycosylase. This equiva	92.43

>KOG0648 consensus Predicted NUDIX hydrolase FGF-2 and related proteins [Signal transduction mechanisms]

Probab=100.00  E-value=3.2e-46  Score=324.01  Aligned_cols=259  Identities=55%  Similarity=0.889  Sum_probs=241.6

Q ss_pred             hhhhcCCCCCCCcCcccceeecccCCcEEEeCC-CCCChHHHHHHHHHHHHHHHHhCCeeEEEEccccccccchHHHhcC
Q 039665           14 EEEQNMMPEDGVRCPELLTAVGDLHGGVTVDMK-KPMDSKVFSSRLRASLSLWRQQGKRGVWIKLPIELANLVEPAVQEG   92 (275)
Q Consensus        14 ~~~~~~~~~~~~~~~~~~~~~~d~~~g~~v~~~-~~~~~~~f~~~l~~~l~~w~~~~~~~vW~~~~~~~~~l~~~~~~~g   92 (275)
                      +..+++.|.+..+++.++.+..|+||||.+++. .++|...|.+.|+.|+..|+.+|++++|++++...+++++++++.|
T Consensus         5 ~~k~~~~~~~~~~~~~~l~~~~D~~ggv~v~~~~~~~d~~~f~~~l~~Sl~~W~~~Gr~~iwl~l~~~~~~lV~~a~~~g   84 (295)
T KOG0648|consen    5 ALKAQPRMDSMSVGSSLLAGLSDRYGGVVVDIVPEPMDEKLFIEELRASLQKWYLQGRKGIWLKLPEELARLVEEAAKYG   84 (295)
T ss_pred             ccccccCCCccccchhhhcccccccCCEEeecccCCCCHHHHHHHHHHHHHHHHHccCcccceechHHHHhHHHHHHhcC
Confidence            334446777888889999999999999999995 6669999999999999999999999999999999999999999999


Q ss_pred             ceeccCCCCeeeEEeecCCCcCCCCCCCcceeEEEEEEEeCCceEEEEEEecCCCCCCCceeCcceeccCCCCHHHHHHH
Q 039665           93 FRYHHAEPDYLMLVYWIPETADVLPANASHRVGVGAFVMNNKRELLVVQENNGALKGTGVWKLPTGTIEEGEDICAAAVR  172 (275)
Q Consensus        93 f~~~~~~~~~~~l~~wl~~~~~~~p~~~~~~v~v~~vv~~~~~~vLLv~r~~~~~~~~~~w~lPgG~ve~gEs~~~aA~R  172 (275)
                      |.|||+..+|+||+.|+++.+.++|.++.|+++++++|+|.+++||+++...+.....|.|++|+|.|+++|++.++|+|
T Consensus        85 f~~hHae~~~~~l~~Wl~e~~~~lP~~Ash~vgvg~~V~n~~~eVlVv~e~d~~~~~~~~wK~ptG~v~~~e~i~~gavr  164 (295)
T KOG0648|consen   85 FDYHHAESLYVMLTSWLREAPSTLPANASHRVGVGAFVLNKKKEVLVVQEKDGAVKIRGGWKLPTGRVEEGEDIWHGAVR  164 (295)
T ss_pred             cEEecccccceeeeeeeccccccCCCchhhheeeeeeEecCCceeEEEEecccceeecccccccceEecccccchhhhhh
Confidence            99999999999999999999999999999999999999998899999998777777899999999999999999999999


Q ss_pred             HHHHHhCCCcceeEEEEEEeeeccccc--eEEEEEEEEEecCCccccCCccccceEEEEeHhhHhcCCCcccchHHHHHH
Q 039665          173 EVKEETGIDTEFVEVLAFRQSHRSFFR--KSDLFFVCMLRPRNFHIQKQDSEIAAAQWMQAEDYAAQPYVLKHQMFNYIC  250 (275)
Q Consensus       173 El~EEtGl~~~~~~~l~~~~~~~~~~~--~~~~~f~~~~~~~~~~~~~~~~E~~~~~Wv~~eel~~~~~~~~~~~~~~~~  250 (275)
                      |++||||++.++.+++.+++.|...+.  +.++||+|.+.+.+..++.+..|+..++||+++++...+..+...+++.+.
T Consensus       165 Evkeetgid~ef~eVla~r~~H~~~~~~~ksd~f~~c~L~p~s~~i~~~~~ei~~~~Wmp~~e~v~qp~~~~~~m~~~~~  244 (295)
T KOG0648|consen  165 EVKEETGIDTEFVEVLAFRRAHNATFGLIKSDMFFTCELRPRSLDITKCKREIEAAAWMPIEEYVSQPLVHPKGMFRLAA  244 (295)
T ss_pred             hhHHHhCcchhhhhHHHHHhhhcchhhcccccceeEEEeeccccccchhHHHHHHHhcccHHHhhcccccccchhhHHHh
Confidence            999999999999999999999888877  899999999999888999999999999999999999999988888999999


Q ss_pred             HHHHhhccCccCCCCCCCCCCC
Q 039665          251 QICLTKSEKEYAGFSPMPLTTG  272 (275)
Q Consensus       251 ~~~~~~~~~~~~g~~~~~~~~~  272 (275)
                      ..|+.++...|.||++..+++.
T Consensus       245 ~Ic~~~~~~~~~~~~~~~l~~~  266 (295)
T KOG0648|consen  245 GICLNRLEEFYLGLTAIVLTTT  266 (295)
T ss_pred             hhhHHHHhhhcCCccceecccc
Confidence            9999999999999997766554

>cd04670 Nudix_Hydrolase_12 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.90  E-value=3.5e-23  Score=162.98  Aligned_cols=126  Identities=54%  Similarity=0.883  Sum_probs=98.9

Q ss_pred             ceeEEEEEEEeCCceEEEEEEecCCCCCCCceeCcceeccCCCCHHHHHHHHHHHHhCCCcceeEEEEEEeeeccccceE
Q 039665          122 HRVGVGAFVMNNKRELLVVQENNGALKGTGVWKLPTGTIEEGEDICAAAVREVKEETGIDTEFVEVLAFRQSHRSFFRKS  201 (275)
Q Consensus       122 ~~v~v~~vv~~~~~~vLLv~r~~~~~~~~~~w~lPgG~ve~gEs~~~aA~REl~EEtGl~~~~~~~l~~~~~~~~~~~~~  201 (275)
                      |.++|+++|+|++++|||++++..   .++.|.+|||++++||++.+||+||++||||+.+.....++....+...+...
T Consensus         1 ~~~~~~~~v~~~~~~vLl~~r~~~---~~~~w~~PGG~ve~gEt~~~aa~RE~~EE~Gl~~~~~~~~~~~~~~~~~~~~~   77 (127)
T cd04670           1 HTVGVGGLVLNEKNEVLVVQERNK---TPNGWKLPGGLVDPGEDIFDGAVREVLEETGIDTEFVSVVGFRHAHPGAFGKS   77 (127)
T ss_pred             CeeEEEEEEEcCCCeEEEEEccCC---CCCcEECCCccCCCCCCHHHHHHHHHHHHHCCCcceeEEEEEEecCCCCcCce
Confidence            567899999998899999988743   47899999999999999999999999999999998888777655444445556


Q ss_pred             EEEEEEEEecCCccccCCccccceEEEEeHhhHhcCCCcccchHHHHHHHH
Q 039665          202 DLFFVCMLRPRNFHIQKQDSEIAAAQWMQAEDYAAQPYVLKHQMFNYICQI  252 (275)
Q Consensus       202 ~~~f~~~~~~~~~~~~~~~~E~~~~~Wv~~eel~~~~~~~~~~~~~~~~~~  252 (275)
                      .++|+|.+......+..+++|+.+++|++++++.+.++...  +.+.+++.
T Consensus        78 ~~~~~~~~~~~~~~~~~~~~E~~~~~w~~~~el~~~~~~~~--~~~~~~~~  126 (127)
T cd04670          78 DLYFICRLKPLSFDINFDTSEIAAAKWMPLEEYISQPITSE--VNRLILDI  126 (127)
T ss_pred             eEEEEEEEccCcCcCCCChhhhheeEEEcHHHHhcchhHHH--HHHHHHhh
Confidence            67777766544444555678889999999999988766544  44444443

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate

>PRK00714 RNA pyrophosphohydrolase; Reviewed

Probab=99.86  E-value=8.6e-21  Score=154.95  Aligned_cols=129  Identities=22%  Similarity=0.327  Sum_probs=98.2

Q ss_pred             cceeEEEEEEEeCCceEEEEEEecCCCCCCCceeCcceeccCCCCHHHHHHHHHHHHhCCCcceeEEEEEEee-------
Q 039665          121 SHRVGVGAFVMNNKRELLVVQENNGALKGTGVWKLPTGTIEEGEDICAAAVREVKEETGIDTEFVEVLAFRQS-------  193 (275)
Q Consensus       121 ~~~v~v~~vv~~~~~~vLLv~r~~~~~~~~~~w~lPgG~ve~gEs~~~aA~REl~EEtGl~~~~~~~l~~~~~-------  193 (275)
                      .++++|+++|+|.+++|||+||.+    .++.|++|||++++||++.+||.||++||||+.+....+++....       
T Consensus         6 ~~~~~v~~~i~~~~g~vLL~~r~~----~~~~w~~P~G~~~~gE~~~~aa~REl~EEtG~~~~~~~~~~~~~~~~~y~~~   81 (156)
T PRK00714          6 GYRPNVGIILLNRQGQVFWGRRIG----QGHSWQFPQGGIDPGETPEQAMYRELYEEVGLRPEDVEILAETRDWLRYDLP   81 (156)
T ss_pred             CCCCeEEEEEEecCCEEEEEEEcC----CCCeEECCcccCCCCcCHHHHHHHHHHHHhCCCccceEEEEEcCCeEEecCc
Confidence            356789999999999999999974    247899999999999999999999999999999987877765421       


Q ss_pred             -------eccccceEEEEEEEEEecCCccccC---CccccceEEEEeHhhHhcCCCcccchHHHHHHHHH
Q 039665          194 -------HRSFFRKSDLFFVCMLRPRNFHIQK---QDSEIAAAQWMQAEDYAAQPYVLKHQMFNYICQIC  253 (275)
Q Consensus       194 -------~~~~~~~~~~~f~~~~~~~~~~~~~---~~~E~~~~~Wv~~eel~~~~~~~~~~~~~~~~~~~  253 (275)
                             .....+...++|++........+.+   +++|+.+++|++++|+.++..+..+.+++.+.+.+
T Consensus        82 ~~~~~~~~~~~~~~~~~~fl~~~~~~~~~~~l~~~~~~E~~~~~W~~~del~~~~~~~~r~~~~~~~~~~  151 (156)
T PRK00714         82 KRLVRRSKGVYRGQKQKWFLLRLTGDDSEINLNTTSHPEFDAWRWVSYWYPLDQVVPFKRDVYRRVLKEF  151 (156)
T ss_pred             HHHhhccCCcccCcEEEEEEEEecCCCccccCCCCCCCCeeeeEeCCHHHHHHhchhhhHHHHHHHHHHH
Confidence                   1112234567888877544333333   34699999999999999987666555666665543

>cd04679 Nudix_Hydrolase_20 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.86  E-value=4.2e-21  Score=150.70  Aligned_cols=112  Identities=21%  Similarity=0.339  Sum_probs=87.5

Q ss_pred             eeEEEEEEEeCCceEEEEEEecCCCCCCCceeCcceeccCCCCHHHHHHHHHHHHhCCCcceeEEEEEEeeecc--ccce
Q 039665          123 RVGVGAFVMNNKRELLVVQENNGALKGTGVWKLPTGTIEEGEDICAAAVREVKEETGIDTEFVEVLAFRQSHRS--FFRK  200 (275)
Q Consensus       123 ~v~v~~vv~~~~~~vLLv~r~~~~~~~~~~w~lPgG~ve~gEs~~~aA~REl~EEtGl~~~~~~~l~~~~~~~~--~~~~  200 (275)
                      +++|+++|++.+++|||++|.+.+  .++.|.+|||++++||++.+||+||++||||+.+....+++.......  ....
T Consensus         2 ~~~~~~~i~~~~~~vLL~~r~~~~--~~~~w~lPgG~ve~gEt~~eaa~RE~~EEtGl~~~~~~~~~~~~~~~~~~~~~~   79 (125)
T cd04679           2 RVGCGAAILRDDGKLLLVKRLRAP--EAGHWGIPGGKVDWMEAVEDAVVREIEEETGLSIHSTRLLCVVDHIIEEPPQHW   79 (125)
T ss_pred             ceEEEEEEECCCCEEEEEEecCCC--CCCeEeCCeeeccCCCCHHHHHHHHHHHHHCCCcccceEEEEEeecccCCCCeE
Confidence            678999999988999999997543  468999999999999999999999999999999988888876654432  2234


Q ss_pred             EEEEEEEEEecCCccccCCccccceEEEEeHhhHhcC
Q 039665          201 SDLFFVCMLRPRNFHIQKQDSEIAAAQWMQAEDYAAQ  237 (275)
Q Consensus       201 ~~~~f~~~~~~~~~~~~~~~~E~~~~~Wv~~eel~~~  237 (275)
                      ..++|++...... ....+++|+.+++|++++++.+.
T Consensus        80 ~~~~f~~~~~~~~-~~~~~~~E~~~~~W~~~~~l~~~  115 (125)
T cd04679          80 VAPVYLAENFSGE-PRLMEPDKLLELGWFALDALPQP  115 (125)
T ss_pred             EEEEEEEeecCCc-cccCCCccccEEEEeCHHHCCch
Confidence            4556777554222 22234578999999999998764

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate

>cd03671 Ap4A_hydrolase_plant_like Diadenosine tetraphosphate (Ap4A) hydrolase is a member of the Nudix hydrolase superfamily

Probab=99.86  E-value=5.7e-21  Score=154.39  Aligned_cols=125  Identities=26%  Similarity=0.464  Sum_probs=94.3

Q ss_pred             ceeEEEEEEEeCCceEEEEEEecCCCCCCCceeCcceeccCCCCHHHHHHHHHHHHhCCCcceeEEEEEEe-----eecc
Q 039665          122 HRVGVGAFVMNNKRELLVVQENNGALKGTGVWKLPTGTIEEGEDICAAAVREVKEETGIDTEFVEVLAFRQ-----SHRS  196 (275)
Q Consensus       122 ~~v~v~~vv~~~~~~vLLv~r~~~~~~~~~~w~lPgG~ve~gEs~~~aA~REl~EEtGl~~~~~~~l~~~~-----~~~~  196 (275)
                      ++.+|+++++|.+++|||++|.+.+    +.|.+|||++++||++.+||+||++||||+++....+++...     ....
T Consensus         2 ~~~~v~~ii~~~~~~vLL~~r~~~~----~~W~~PgG~~e~gE~~~~aA~REv~EEtGl~~~~~~~l~~~~~~~~y~~~~   77 (147)
T cd03671           2 YRPNVGVVLFNEDGKVFVGRRIDTP----GAWQFPQGGIDEGEDPEQAALRELEEETGLDPDSVEIIAEIPDWLRYDLPP   77 (147)
T ss_pred             CCceEEEEEEeCCCEEEEEEEcCCC----CCEECCcCCCCCCcCHHHHHHHHHHHHHCCCcCceEEEEEcCCeeEeeChh
Confidence            4568999999988999999998533    799999999999999999999999999999988777776431     1110


Q ss_pred             ----------ccceEEEEEEEEEecCCccccCC---ccccceEEEEeHhhHhcCCCcccchHHHHHH
Q 039665          197 ----------FFRKSDLFFVCMLRPRNFHIQKQ---DSEIAAAQWMQAEDYAAQPYVLKHQMFNYIC  250 (275)
Q Consensus       197 ----------~~~~~~~~f~~~~~~~~~~~~~~---~~E~~~~~Wv~~eel~~~~~~~~~~~~~~~~  250 (275)
                                ..+...++|++.+......+..+   ++|+.+++|++++++.++..+....++..++
T Consensus        78 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~E~~~~~W~~~~el~~~~~~~~~~~~~~~~  144 (147)
T cd03671          78 ELKLKIWGGRYRGQEQKWFLFRFTGDDSEIDLNAPEHPEFDEWRWVPLEELPDLIVPFKRPVYEAVL  144 (147)
T ss_pred             hhhccccCCcCCCEEEEEEEEEecCCCccccCCCCCCCCEeeEEeCCHHHHHHhchhhhHHHHHHHH
Confidence                      11345677777766533343333   5699999999999999987765544444433

Members of this family are well represented in a variety of prokaryotic and eukaryotic organisms. Phylogenetic analysis reveals two distinct subgroups where plant enzymes fall into one group (represented by this subfamily) and fungi/animals/archaea enzymes fall into another. Bacterial enzymes are found in both subfamilies. Ap4A is a potential by-product of aminoacyl tRNA synthesis, and accumulation of Ap4A has been implicated in a range of biological events, such as DNA replication, cellular differentiation, heat shock, metabolic stress, and apoptosis. Ap4A hydrolase cleaves Ap4A asymmetrically into ATP and AMP. It is important in the invasive properties of bacteria and thus presents a potential target for the inhibition of such invasive bacteria. Besides the signature nudix motif (G[X5]E[X7]REUXEEXGU where U is Ile, Leu, or Val), Ap4A hydrolase is structurally

>cd03430 GDPMH GDP-mannose glycosyl hydrolase (AKA GDP-mannose mannosyl hydrolase (GDPMH)) is a member of the Nudix hydrolase superfamily

Probab=99.86  E-value=1.8e-20  Score=151.06  Aligned_cols=115  Identities=22%  Similarity=0.313  Sum_probs=88.0

Q ss_pred             cceeEEEEEEEeCCceEEEEEEecCCCCCCCceeCcceeccCCCCHHHHHHHHHHHHhCCCccee--EEEEEEeeecc--
Q 039665          121 SHRVGVGAFVMNNKRELLVVQENNGALKGTGVWKLPTGTIEEGEDICAAAVREVKEETGIDTEFV--EVLAFRQSHRS--  196 (275)
Q Consensus       121 ~~~v~v~~vv~~~~~~vLLv~r~~~~~~~~~~w~lPgG~ve~gEs~~~aA~REl~EEtGl~~~~~--~~l~~~~~~~~--  196 (275)
                      +++++|+++|+|.+++|||+||.+.+  .+|.|.||||+++.||++.+||+||++||||+.+...  ++++.......  
T Consensus        10 ~p~v~v~~vI~~~~g~vLl~~R~~~p--~~g~w~lPGG~ve~gEs~~~aa~RE~~EE~Gl~v~~~~~~~l~~~~~~~~~~   87 (144)
T cd03430          10 TPLVSIDLIVENEDGQYLLGKRTNRP--AQGYWFVPGGRIRKNETLTEAFERIAKDELGLEFLISDAELLGVFEHFYDDN   87 (144)
T ss_pred             CCeEEEEEEEEeCCCeEEEEEccCCC--CCCcEECCCceecCCCCHHHHHHHHHHHHHCCCcccccceEEEEEEEEeccc
Confidence            45788999999988999999998643  5789999999999999999999999999999998766  67766543211  


Q ss_pred             ----c--cceEEEEEEEEEecCCccccCCccccceEEEEeHhhHhcCCC
Q 039665          197 ----F--FRKSDLFFVCMLRPRNFHIQKQDSEIAAAQWMQAEDYAAQPY  239 (275)
Q Consensus       197 ----~--~~~~~~~f~~~~~~~~~~~~~~~~E~~~~~Wv~~eel~~~~~  239 (275)
                          .  .+....+|.|...  .......++|+.+++|++++++.++..
T Consensus        88 ~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~e~~~~~W~~~~el~~~~~  134 (144)
T cd03430          88 FFGDDFSTHYVVLGYVLKLS--SNELLLPDEQHSEYQWLTSDELLADDD  134 (144)
T ss_pred             cccCCCccEEEEEEEEEEEc--CCcccCCchhccEeEEecHHHHhcCCC
Confidence                1  1223445555443  233445678999999999999997643

This class of enzymes is unique from other members of the superfamily in two aspects. First, it contains a modified Nudix signature sequence. The slight changes to the conserved sequence motif, GX5EX7REUXEEXGU, where U = I, L or V), are believed to contribute to the removal of all magnesium binding sites but one, retaining only the metal site that coordinates the pyrophosphate of the substrate. Secondly, it is not a pyrophosphatase that substitutes at a phosphorus; instead, it hydrolyzes nucleotide sugars such as GDP-mannose to GDP and mannose, cleaving the phosphoglycosyl bond by substituting at a carbon position. GDP-mannose provides mannosyl components for cell wall synthesis and is required for the synthesis of other glycosyl donors (such as GDP-fucose and colitose) for the cell wall. The importance of GDP-sugar hydrolase activities is thus close

>cd03424 ADPRase_NUDT5 ADP-ribose pyrophosphatase (ADPRase) catalyzes the hydrolysis of ADP-ribose and a variety of additional ADP-sugar conjugates to AMP and ribose-5-phosphate

Probab=99.85  E-value=9.7e-21  Score=150.88  Aligned_cols=118  Identities=19%  Similarity=0.177  Sum_probs=92.5

Q ss_pred             eeEEEEEEEeCCceEEEEEEecCCCCCCCceeCcceeccCCCCHHHHHHHHHHHHhCCCcceeEEEEEEeeeccccceEE
Q 039665          123 RVGVGAFVMNNKRELLVVQENNGALKGTGVWKLPTGTIEEGEDICAAAVREVKEETGIDTEFVEVLAFRQSHRSFFRKSD  202 (275)
Q Consensus       123 ~v~v~~vv~~~~~~vLLv~r~~~~~~~~~~w~lPgG~ve~gEs~~~aA~REl~EEtGl~~~~~~~l~~~~~~~~~~~~~~  202 (275)
                      ..+|+++++++++++||+++++.+. .++.|++|||+++.||++.+||+||++||||+.+..+..++.............
T Consensus         2 ~~~v~v~~~~~~~~iLl~~~~~~~~-~~~~w~~PgG~ve~gEs~~~aa~RE~~EE~Gl~~~~~~~~~~~~~~~~~~~~~~   80 (137)
T cd03424           2 PDAVAVLPYDDDGKVVLVRQYRPPV-GGWLLELPAGLIDPGEDPEEAARRELEEETGYEAGDLEKLGSFYPSPGFSDERI   80 (137)
T ss_pred             CCEEEEEEEcCCCeEEEEEeeecCC-CCEEEEeCCccCCCCCCHHHHHHHHHHHHHCCCccceEEEeeEecCCcccCccE
Confidence            3578899999999999999876653 568999999999999999999999999999999987777766554433334455


Q ss_pred             EEEEEEEecCCccccCCccccceEEEEeHhhHhcCCCcc
Q 039665          203 LFFVCMLRPRNFHIQKQDSEIAAAQWMQAEDYAAQPYVL  241 (275)
Q Consensus       203 ~~f~~~~~~~~~~~~~~~~E~~~~~Wv~~eel~~~~~~~  241 (275)
                      ++|+|...........++.|+.+++|++++|+.++....
T Consensus        81 ~~~~~~~~~~~~~~~~~~~E~~~~~w~~~~el~~~~~~~  119 (137)
T cd03424          81 HLFLAEDLSPGEEGLLDEGEDIEVVLVPLDEALELLADG  119 (137)
T ss_pred             EEEEEEcccccccCCCCCCCeeEEEEecHHHHHHHHHcC
Confidence            677776544332245567889999999999999875543

Like other members of the Nudix hydrolase superfamily, it requires a divalent cation, such as Mg2+, for its activity. It also contains a highly conserved 23-residue Nudix motif (GX5EX7REUXEEXGU, where U = I, L or V) which functions as a metal binding site/catalytic site. In addition to the Nudix motif, there are additional conserved amino acid residues, distal from the signature sequence, that correlate with substrate specificity. In humans, there are four distinct ADPRase activities, three putative cytosolic enzymes (ADPRase-I, -II, and -Mn) and a single mitochondrial enzyme (ADPRase-m). Human ADPRase-II is also referred to as NUDT5. It lacks the N-terminal target sequence unique to mitochondrial ADPRase. The different cytosolic types are distinguished by their specificities for substrate and specific requirem

>PRK15434 GDP-mannose mannosyl hydrolase NudD; Provisional

Probab=99.85  E-value=3e-20  Score=151.87  Aligned_cols=114  Identities=19%  Similarity=0.267  Sum_probs=84.8

Q ss_pred             ceeEEEEEEEeCCceEEEEEEecCCCCCCCceeCcceeccCCCCHHHHHHHHHHHHhCCCcce--eEEEEEEeeeccc--
Q 039665          122 HRVGVGAFVMNNKRELLVVQENNGALKGTGVWKLPTGTIEEGEDICAAAVREVKEETGIDTEF--VEVLAFRQSHRSF--  197 (275)
Q Consensus       122 ~~v~v~~vv~~~~~~vLLv~r~~~~~~~~~~w~lPgG~ve~gEs~~~aA~REl~EEtGl~~~~--~~~l~~~~~~~~~--  197 (275)
                      ..++|.++|.+++++|||+||...+  .++.|+||||++++||++.+||+||++||||+.+..  ..+++.....+..  
T Consensus        16 ~~~~v~~vI~~~~g~VLL~kR~~~~--~~g~W~lPGG~VE~GEt~~~Aa~REl~EEtGl~v~~~~~~~~~~~~~~~~~~~   93 (159)
T PRK15434         16 PLISLDFIVENSRGEFLLGKRTNRP--AQGYWFVPGGRVQKDETLEAAFERLTMAELGLRLPITAGQFYGVWQHFYDDNF   93 (159)
T ss_pred             ceEEEEEEEECCCCEEEEEEccCCC--CCCcEECCceecCCCCCHHHHHHHHHHHHHCCccccccceEEEEEEeeccccc
Confidence            3568889999988999999997543  579999999999999999999999999999998743  3555543322211  


Q ss_pred             ----c--ceEEEEEEEEEecCCccccCCccccceEEEEeHhhHhcCCC
Q 039665          198 ----F--RKSDLFFVCMLRPRNFHIQKQDSEIAAAQWMQAEDYAAQPY  239 (275)
Q Consensus       198 ----~--~~~~~~f~~~~~~~~~~~~~~~~E~~~~~Wv~~eel~~~~~  239 (275)
                          +  ....++|.|..  ..+.+..+++|+.+++|++++++..+..
T Consensus        94 ~~~~~~~~~i~~~f~~~~--~~g~~~~~~~E~~~~~W~~~~el~~~~~  139 (159)
T PRK15434         94 SGTDFTTHYVVLGFRLRV--AEEDLLLPDEQHDDYRWLTPDALLASDN  139 (159)
T ss_pred             CCCccceEEEEEEEEEEe--cCCcccCChHHeeEEEEEeHHHhhhccc
Confidence                1  12334455544  3445555677999999999999987643

>PRK11762 nudE adenosine nucleotide hydrolase NudE; Provisional

Probab=99.85  E-value=1.4e-20  Score=157.90  Aligned_cols=154  Identities=17%  Similarity=0.110  Sum_probs=114.2

Q ss_pred             HHHHhCCeeE----EEEccccccccchHHHhcCceeccCCCCeeeEEeecCCCcCCCCCCCcceeEEEEEEEeCCceEEE
Q 039665           64 LWRQQGKRGV----WIKLPIELANLVEPAVQEGFRYHHAEPDYLMLVYWIPETADVLPANASHRVGVGAFVMNNKRELLV  139 (275)
Q Consensus        64 ~w~~~~~~~v----W~~~~~~~~~l~~~~~~~gf~~~~~~~~~~~l~~wl~~~~~~~p~~~~~~v~v~~vv~~~~~~vLL  139 (275)
                      .|+..+++.|    ||++......+...  .. ..|.+.       .         .+    +..+|++++++++++|||
T Consensus         7 ~~~~~~~~~v~~~~~~~v~~~~~~~~~G--~~-~~~~~v-------~---------~~----~~~~v~v~~~~~~~~vlL   63 (185)
T PRK11762          7 KPEILNRETVAKSRLFRVESVDLEFSNG--VE-RVYERM-------R---------PS----GRGAVMIVPILDDDTLLL   63 (185)
T ss_pred             CCEEeeEEEEEeCCEEEEEEEEEEcCCC--CE-EEEEEE-------e---------cC----CCCEEEEEEEeCCCEEEE
Confidence            6777777777    99999888776321  11 111111       0         01    123576777888889999


Q ss_pred             EEEecCCCCCCCceeCcceeccCCCCHHHHHHHHHHHHhCCCcceeEEEEEEeeeccccceEEEEEEEEEecCCccccCC
Q 039665          140 VQENNGALKGTGVWKLPTGTIEEGEDICAAAVREVKEETGIDTEFVEVLAFRQSHRSFFRKSDLFFVCMLRPRNFHIQKQ  219 (275)
Q Consensus       140 v~r~~~~~~~~~~w~lPgG~ve~gEs~~~aA~REl~EEtGl~~~~~~~l~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~  219 (275)
                      ++|++.+. +...|+||||.+|+||++.+||+||++||||+.+..+..++.+...++......++|+|...... ....+
T Consensus        64 vrq~r~~~-~~~~~elPaG~ve~gE~~~~aA~REl~EEtG~~~~~l~~l~~~~~~~~~~~~~~~~f~a~~~~~~-~~~~~  141 (185)
T PRK11762         64 IREYAAGT-ERYELGFPKGLIDPGETPLEAANRELKEEVGFGARQLTFLKELSLAPSYFSSKMNIVLAEDLYPE-RLEGD  141 (185)
T ss_pred             EEeecCCC-CCcEEEccceeCCCCCCHHHHHHHHHHHHHCCCCcceEEEEEEecCCCccCcEEEEEEEEccccc-cCCCC
Confidence            99987664 67889999999999999999999999999999999999999888777777777888888543222 22335


Q ss_pred             ccccceEEEEeHhhHhcCCCccc
Q 039665          220 DSEIAAAQWMQAEDYAAQPYVLK  242 (275)
Q Consensus       220 ~~E~~~~~Wv~~eel~~~~~~~~  242 (275)
                      +.|..++.|++++++.++.....
T Consensus       142 e~E~i~~~~~~~~e~~~~~~~g~  164 (185)
T PRK11762        142 EPEPLEVVRWPLADLDELLARPD  164 (185)
T ss_pred             CCceeEEEEEcHHHHHHHHHcCC
Confidence            66778899999999988755543

>PRK09438 nudB dihydroneopterin triphosphate pyrophosphatase; Provisional

Probab=99.85  E-value=1.3e-20  Score=152.43  Aligned_cols=125  Identities=27%  Similarity=0.375  Sum_probs=89.8

Q ss_pred             ceeEEEEEEEeCCceEEEEEEecCCCCCCCceeCcceeccCCCCHHHHHHHHHHHHhCCCc--ceeEEEEEEee------
Q 039665          122 HRVGVGAFVMNNKRELLVVQENNGALKGTGVWKLPTGTIEEGEDICAAAVREVKEETGIDT--EFVEVLAFRQS------  193 (275)
Q Consensus       122 ~~v~v~~vv~~~~~~vLLv~r~~~~~~~~~~w~lPgG~ve~gEs~~~aA~REl~EEtGl~~--~~~~~l~~~~~------  193 (275)
                      ++++|++++++.+++|||+||.+    .++.|++|||++|+||++.+||+||++||||+++  ....++.....      
T Consensus         6 ~~~~v~~vi~~~~~~vLl~~r~~----~~~~W~lPgG~ve~gEs~~~aa~REl~EEtGl~~~~~~~~~~~~~~~~~~~~~   81 (148)
T PRK09438          6 RPVSVLVVIYTPDLGVLMLQRAD----DPDFWQSVTGSLEEGETPAQTAIREVKEETGIDVLAEQLTLIDCQRSIEYEIF   81 (148)
T ss_pred             CceEEEEEEEeCCCeEEEEEecC----CCCcEeCCcccCCCCCCHHHHHHHHHHHHhCcCccccceeecccccccccccc
Confidence            56789999999899999998864    3578999999999999999999999999999998  44444321100      


Q ss_pred             -------eccccceEEEEEEEEEecCCccccCCccccceEEEEeHhhHhcCCCcccchHHHHHHHHHHhh
Q 039665          194 -------HRSFFRKSDLFFVCMLRPRNFHIQKQDSEIAAAQWMQAEDYAAQPYVLKHQMFNYICQICLTK  256 (275)
Q Consensus       194 -------~~~~~~~~~~~f~~~~~~~~~~~~~~~~E~~~~~Wv~~eel~~~~~~~~~~~~~~~~~~~~~~  256 (275)
                             .....+...++|+|....   ......+|+.++.|++++++.++.....   .+.+++.++..
T Consensus        82 ~~~~~~~~~~~~~~~~~~f~~~~~~---~~~~~~~E~~~~~W~~~~e~~~~~~~~~---~~~~l~~~~~~  145 (148)
T PRK09438         82 PHWRHRYAPGVTRNTEHWFCLALPH---ERPVVLTEHLAYQWLDAREAAALTKSWS---NAEAIEQLVIR  145 (148)
T ss_pred             hhhhhccccccCCceeEEEEEecCC---CCccccCcccceeeCCHHHHHHHhcChh---HHHHHHHHHHH
Confidence                   112234556778776432   1122345899999999999999866443   44555555443

>cd04680 Nudix_Hydrolase_21 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.84  E-value=2.1e-20  Score=145.24  Aligned_cols=109  Identities=25%  Similarity=0.337  Sum_probs=86.0

Q ss_pred             EEEEEEEeCCceEEEEEEecCCCCCCCceeCcceeccCCCCHHHHHHHHHHHHhCCCcc-eeEEEEEEeeeccccceEEE
Q 039665          125 GVGAFVMNNKRELLVVQENNGALKGTGVWKLPTGTIEEGEDICAAAVREVKEETGIDTE-FVEVLAFRQSHRSFFRKSDL  203 (275)
Q Consensus       125 ~v~~vv~~~~~~vLLv~r~~~~~~~~~~w~lPgG~ve~gEs~~~aA~REl~EEtGl~~~-~~~~l~~~~~~~~~~~~~~~  203 (275)
                      +|.+++++.++++||++|..     .+.|.+|||++++||++.+||+||++||||+.+. ....++.............+
T Consensus         2 ~~~~~i~~~~~~vLL~~r~~-----~~~w~~PgG~ve~gEt~~~aa~REl~EEtG~~~~~~~~~~~~~~~~~~~~~~~~~   76 (120)
T cd04680           2 GARAVVTDADGRVLLVRHTY-----GPGWYLPGGGLERGETFAEAARRELLEELGIRLAVVAELLGVYYHSASGSWDHVI   76 (120)
T ss_pred             ceEEEEECCCCeEEEEEECC-----CCcEeCCCCcCCCCCCHHHHHHHHHHHHHCCccccccceEEEEecCCCCCceEEE
Confidence            57788999889999999873     2389999999999999999999999999999998 88888776655544445556


Q ss_pred             EEEEEEecCCccccCCccccceEEEEeHhhHhcCCCc
Q 039665          204 FFVCMLRPRNFHIQKQDSEIAAAQWMQAEDYAAQPYV  240 (275)
Q Consensus       204 ~f~~~~~~~~~~~~~~~~E~~~~~Wv~~eel~~~~~~  240 (275)
                      +|.|...  ......+++|+.+++|++++++.+...+
T Consensus        77 ~f~~~~~--~~~~~~~~~E~~~~~w~~~~~l~~~~~~  111 (120)
T cd04680          77 VFRARAD--TQPVIRPSHEISEARFFPPDALPEPTTP  111 (120)
T ss_pred             EEEeccc--CCCccCCcccEEEEEEECHHHCcccCCh
Confidence            6666443  3332456789999999999999885443

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate

>cd04700 DR1025_like DR1025 from Deinococcus radiodurans, a member of the Nudix hydrolase superfamily, show nucleoside triphosphatase and dinucleoside polyphosphate pyrophosphatase activities

Probab=99.84  E-value=6.3e-20  Score=147.53  Aligned_cols=118  Identities=28%  Similarity=0.375  Sum_probs=89.5

Q ss_pred             cceeEEEEEEEeCCceEEEEEEecCCCCCCCceeCcceeccCCCCHHHHHHHHHHHHhCCCcceeEEEEEEeeeccc-cc
Q 039665          121 SHRVGVGAFVMNNKRELLVVQENNGALKGTGVWKLPTGTIEEGEDICAAAVREVKEETGIDTEFVEVLAFRQSHRSF-FR  199 (275)
Q Consensus       121 ~~~v~v~~vv~~~~~~vLLv~r~~~~~~~~~~w~lPgG~ve~gEs~~~aA~REl~EEtGl~~~~~~~l~~~~~~~~~-~~  199 (275)
                      ....+|+++|+|.++++||++++..+  .++.|+||||++++||++.+||+||++||||+++.....++.+...... ..
T Consensus        11 ~~~~av~~vv~~~~~~vLL~~r~~~~--~~~~w~lPgG~ve~gEt~~~aa~REl~EEtGl~~~~~~~~~~~~~~~~~~~~   88 (142)
T cd04700          11 VEARAAGAVILNERNDVLLVQEKGGP--KKGLWHIPSGAVEDGEFPQDAAVREACEETGLRVRPVKFLGTYLGRFDDGVL   88 (142)
T ss_pred             eeeeeEEEEEEeCCCcEEEEEEcCCC--CCCeEECCceecCCCCCHHHHHHHHHHHhhCceeeccEEEEEEEEEcCCCcE
Confidence            34568999999988899999986543  5789999999999999999999999999999999888877755432222 12


Q ss_pred             eEEEEEEEEEecCCccccCCccccceEEEEeHhhHhcCCCcc
Q 039665          200 KSDLFFVCMLRPRNFHIQKQDSEIAAAQWMQAEDYAAQPYVL  241 (275)
Q Consensus       200 ~~~~~f~~~~~~~~~~~~~~~~E~~~~~Wv~~eel~~~~~~~  241 (275)
                      ...++|++........+. ..+|+.+++|++++++.++....
T Consensus        89 ~~~~~f~~~~~~~~~~~~-~~~E~~~~~w~~~~el~~~~~~g  129 (142)
T cd04700          89 VLRHVWLAEPEGQTLAPK-FTDEIAEASFFSREDVAQLYAQG  129 (142)
T ss_pred             EEEEEEEEEecCCccccC-CCCCEEEEEEECHHHhhhccccc
Confidence            334677776543222222 34789999999999999886543

Like other enzymes belonging to this superfamily, it requires a divalent cation, in this case Mg2+, for its activity. It also contains a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. In general, substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is us

>PF00293 NUDIX: NUDIX domain; InterPro: IPR000086 The generic name 'NUDIX hydrolases' (NUcleoside DIphosphate linked to some other moiety X) has been coined for this domain family []

Probab=99.84  E-value=3.6e-20  Score=145.96  Aligned_cols=120  Identities=30%  Similarity=0.485  Sum_probs=94.7

Q ss_pred             eeEEEEEEEeCCceEEEEEEecCCCCCCCceeCcceeccCCCCHHHHHHHHHHHHhCCCcceeEEEEEEeeecccc---c
Q 039665          123 RVGVGAFVMNNKRELLVVQENNGALKGTGVWKLPTGTIEEGEDICAAAVREVKEETGIDTEFVEVLAFRQSHRSFF---R  199 (275)
Q Consensus       123 ~v~v~~vv~~~~~~vLLv~r~~~~~~~~~~w~lPgG~ve~gEs~~~aA~REl~EEtGl~~~~~~~l~~~~~~~~~~---~  199 (275)
                      +.+|++++++.+++|||++|.+.+...++.|.+|||++++||++.+||+||++||||+.+.....++.........   +
T Consensus         2 ~~~v~~ii~~~~~~vLl~~r~~~~~~~~~~~~~pgG~i~~~E~~~~aa~REl~EE~g~~~~~~~~~~~~~~~~~~~~~~~   81 (134)
T PF00293_consen    2 RRAVGVIIFNEDGKVLLIKRSRSPITFPGYWELPGGGIEPGESPEEAARRELKEETGLDVSPLELLGLFSYPSPSGDPEG   81 (134)
T ss_dssp             EEEEEEEEEETTTEEEEEEESTTSSSSTTEEESSEEEECTTSHHHHHHHHHHHHHHSEEEEEEEEEEEEEEEETTTESSE
T ss_pred             CCEEEEEEEeCCcEEEEEEecCCCCCCCCeEecceeeEEcCCchhhhHHhhhhhcccceecccccceeeeecccCCCccc
Confidence            5679999999988999999997654467999999999999999999999999999999987666666544433322   2


Q ss_pred             eEEEEEEEEEecCCccccCCccccceEEEEeHhhHhcCCCccc
Q 039665          200 KSDLFFVCMLRPRNFHIQKQDSEIAAAQWMQAEDYAAQPYVLK  242 (275)
Q Consensus       200 ~~~~~f~~~~~~~~~~~~~~~~E~~~~~Wv~~eel~~~~~~~~  242 (275)
                      ...++|++.+.........+..|..+++|++++++.++.....
T Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~e~~~~~W~~~~el~~~~~~~~  124 (134)
T PF00293_consen   82 EIVIFFIAELPSEQSEIQPQDEEISEVKWVPPDELLELLLNGR  124 (134)
T ss_dssp             EEEEEEEEEEEEEESECHTTTTTEEEEEEEEHHHHHHHHHTTH
T ss_pred             EEEEEEEEEEeCCccccCCCCccEEEEEEEEHHHhhhchhCcc
Confidence            5566677766554434445556999999999999999866554

The family can be divided into a number of subgroups, of which MutT anti- mutagenic activity represents only one type; most of the rest hydrolyse diverse nucleoside diphosphate derivatives (including ADP-ribose, GDP- mannose, TDP-glucose, NADH, UDP-sugars, dNTP and NTP).; GO: 0016787 hydrolase activity; PDB: 3FJY_A 3MGM_A 2XSQ_A 3COU_A 2O5F_A 1Q27_A 3F6A_A 3E57_B 3SON_B 2GT4_C ....

>cd04678 Nudix_Hydrolase_19 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.84  E-value=6.8e-20  Score=144.48  Aligned_cols=113  Identities=30%  Similarity=0.472  Sum_probs=88.6

Q ss_pred             eeEEEEEEEeCCceEEEEEEecCCCCCCCceeCcceeccCCCCHHHHHHHHHHHHhCCCcceeEEEEEEeeecc--ccce
Q 039665          123 RVGVGAFVMNNKRELLVVQENNGALKGTGVWKLPTGTIEEGEDICAAAVREVKEETGIDTEFVEVLAFRQSHRS--FFRK  200 (275)
Q Consensus       123 ~v~v~~vv~~~~~~vLLv~r~~~~~~~~~~w~lPgG~ve~gEs~~~aA~REl~EEtGl~~~~~~~l~~~~~~~~--~~~~  200 (275)
                      +++|+++++|.+++|||++|..++  .++.|.+|||++++||++.+||+||++||||+++.....++.......  ....
T Consensus         2 ~~~v~~ii~~~~~~iLl~~r~~~~--~~~~w~~PGG~ve~gEt~~~Aa~REl~EE~Gl~~~~~~~~~~~~~~~~~~~~~~   79 (129)
T cd04678           2 RVGVGVFVLNPKGKVLLGKRKGSH--GAGTWALPGGHLEFGESFEECAAREVLEETGLHIENVQFLTVTNDVFEEEGKHY   79 (129)
T ss_pred             ceEEEEEEECCCCeEEEEeccCCC--CCCeEECCcccccCCCCHHHHHHHHHHHHhCCcccceEEEEEEeEEeCCCCcEE
Confidence            578999999988999999998543  578999999999999999999999999999999988887776554322  2234


Q ss_pred             EEEEEEEEEecCCccccC-CccccceEEEEeHhhHhcC
Q 039665          201 SDLFFVCMLRPRNFHIQK-QDSEIAAAQWMQAEDYAAQ  237 (275)
Q Consensus       201 ~~~~f~~~~~~~~~~~~~-~~~E~~~~~Wv~~eel~~~  237 (275)
                      ..++|.|........... +.+|..+++|++++++..+
T Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~e~~~~~W~~~~~l~~~  117 (129)
T cd04678          80 VTIFVKAEVDDGEAEPNKMEPEKCEGWEWFDWEELPSV  117 (129)
T ss_pred             EEEEEEEEeCCCCcccCCCCCceeCceEEeCHHHCCCc
Confidence            556777766543322221 4567889999999999987

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate

>cd03673 Ap6A_hydrolase Diadenosine hexaphosphate (Ap6A) hydrolase is a member of the Nudix hydrolase superfamily

Probab=99.84  E-value=5.9e-20  Score=144.69  Aligned_cols=109  Identities=27%  Similarity=0.405  Sum_probs=84.4

Q ss_pred             eEEEEEEEeCC---ceEEEEEEecCCCCCCCceeCcceeccCCCCHHHHHHHHHHHHhCCCcceeEEEEEEeeecc----
Q 039665          124 VGVGAFVMNNK---RELLVVQENNGALKGTGVWKLPTGTIEEGEDICAAAVREVKEETGIDTEFVEVLAFRQSHRS----  196 (275)
Q Consensus       124 v~v~~vv~~~~---~~vLLv~r~~~~~~~~~~w~lPgG~ve~gEs~~~aA~REl~EEtGl~~~~~~~l~~~~~~~~----  196 (275)
                      .++++++++.+   ++|||+++++     .+.|.||||++++||++.+||.||++||||+.+.....++.......    
T Consensus         2 ~~a~~ii~~~~~~~~~vLl~~~~~-----~~~w~~PgG~v~~gEs~~~aa~REl~EEtGl~~~~~~~~~~~~~~~~~~~~   76 (131)
T cd03673           2 LAAGGVVFRGSDGGIEVLLIHRPR-----GDDWSLPKGKLEPGETPPEAAVREVEEETGIRAEVGDPLGTIRYWFSSSGK   76 (131)
T ss_pred             eeEEEEEEEccCCCeEEEEEEcCC-----CCcccCCCCccCCCCCHHHHHHHHHhhhhCCceEecceEEEEEEeccCCCC
Confidence            35788888865   8999999974     27899999999999999999999999999999988887776544333    


Q ss_pred             ccceEEEEEEEEEecCCccccC-CccccceEEEEeHhhHhcCCC
Q 039665          197 FFRKSDLFFVCMLRPRNFHIQK-QDSEIAAAQWMQAEDYAAQPY  239 (275)
Q Consensus       197 ~~~~~~~~f~~~~~~~~~~~~~-~~~E~~~~~Wv~~eel~~~~~  239 (275)
                      ......++|++....  ..... ++.|+.+++|++++++.++..
T Consensus        77 ~~~~~~~~~~~~~~~--~~~~~~~~~E~~~~~W~~~~el~~~~~  118 (131)
T cd03673          77 RVHKTVHWWLMRALG--GEFTPQPDEEVDEVRWLPPDEARDRLS  118 (131)
T ss_pred             CcceEEEEEEEEEcC--CCcccCCCCcEEEEEEcCHHHHHHHcC
Confidence            233555666665432  23332 567899999999999988654

Ap6A hydrolase specifically hydrolyzes diadenosine polyphosphates, but not ATP or diadenosine triphosphate, and it generates ATP as the product. Ap6A, the most preferred substrate, hydrolyzes to produce two ATP molecules, which is a novel hydrolysis mode for Ap6A. These results indicate that Ap6A hydrolase is a diadenosine polyphosphate hydrolase. It requires the presence of a divalent cation, such as Mn2+, Mg2+, Zn2+, and Co2+, for activity. Members of the Nudix superfamily are recognized by a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which forms a structural motif that functions as a metal binding and catalytic site.

>cd04682 Nudix_Hydrolase_23 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.84  E-value=4.8e-20  Score=144.20  Aligned_cols=112  Identities=23%  Similarity=0.291  Sum_probs=81.5

Q ss_pred             EEEEEeCCceEEEEEEecC-CCCCCCceeCcceeccCCCCHHHHHHHHHHHHhCCCcceeEEEEEEeeeccccceEEEEE
Q 039665          127 GAFVMNNKRELLVVQENNG-ALKGTGVWKLPTGTIEEGEDICAAAVREVKEETGIDTEFVEVLAFRQSHRSFFRKSDLFF  205 (275)
Q Consensus       127 ~~vv~~~~~~vLLv~r~~~-~~~~~~~w~lPgG~ve~gEs~~~aA~REl~EEtGl~~~~~~~l~~~~~~~~~~~~~~~~f  205 (275)
                      +++++.++++|||++|.+. ....+|.|.||||+++.||++.+||+||++||||++++...+...............++|
T Consensus         4 ~~~~~~~~g~vLl~~r~~~~~~~~~g~w~~PgG~ve~gE~~~~aa~RE~~EE~Gl~~~~~~~~~~~~~~~~~~~~~~~~f   83 (122)
T cd04682           4 ALALLIGDGRLLLQLRDDKPGIPYPGHWDLPGGHREGGETPLECVLRELLEEIGLTLPESRIPWFRVYPSASPPGTEHVF   83 (122)
T ss_pred             EEEEEEcCCEEEEEEccCCCCCCCCCcEeCCCccccCCCCHHHHHHHHHHHHhCCcccccccceeEecccCCCCceEEEE
Confidence            3344444599999999865 345689999999999999999999999999999999864333222222222334566777


Q ss_pred             EEEEecCCccccCCccccceEEEEeHhhHhcCCC
Q 039665          206 VCMLRPRNFHIQKQDSEIAAAQWMQAEDYAAQPY  239 (275)
Q Consensus       206 ~~~~~~~~~~~~~~~~E~~~~~Wv~~eel~~~~~  239 (275)
                      ++...... ....+.+|+.+++|++++|+.+...
T Consensus        84 ~~~~~~~~-~~~~~~~E~~~~~W~~~~el~~~~~  116 (122)
T cd04682          84 VVPLTARE-DAILFGDEGQALRLMTVEEFLAHED  116 (122)
T ss_pred             EEEEecCC-CccccCchhheeecccHHHHhhccc
Confidence            77665332 3445778999999999999987644

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate

>cd04684 Nudix_Hydrolase_25 Contains a crystal structure of the Nudix hydrolase from Enterococcus faecalis, which has an unknown function

Probab=99.83  E-value=9.3e-20  Score=142.97  Aligned_cols=114  Identities=26%  Similarity=0.362  Sum_probs=86.6

Q ss_pred             EEEEEEEeCCceEEEEEEecCCCCCCCceeCcceeccCCCCHHHHHHHHHHHHhCCCcceeEEEEEEeeeccc------c
Q 039665          125 GVGAFVMNNKRELLVVQENNGALKGTGVWKLPTGTIEEGEDICAAAVREVKEETGIDTEFVEVLAFRQSHRSF------F  198 (275)
Q Consensus       125 ~v~~vv~~~~~~vLLv~r~~~~~~~~~~w~lPgG~ve~gEs~~~aA~REl~EEtGl~~~~~~~l~~~~~~~~~------~  198 (275)
                      +|+++|+++ ++|||+++.+.+  .++.|.+|||++++||++.+||+||++||||+.+....+++........      .
T Consensus         2 ~~~~ii~~~-~~vLl~~~~~~~--~~~~w~lPgG~ve~gE~~~~aa~RE~~EEtGl~~~~~~~~~~~~~~~~~~~~~~~~   78 (128)
T cd04684           2 GAYAVIPRD-GKLLLIQKNGGP--YEGRWDLPGGGIEPGESPEEALHREVLEETGLTVEIGRRLGSASRYFYSPDGDYDA   78 (128)
T ss_pred             eeEEEEEeC-CEEEEEEccCCC--CCCeEECCCcccCCCCCHHHHHHHHHHHHhCcEeecceeeeEEEEEEECCCCCeec
Confidence            577888886 899999998654  5799999999999999999999999999999999888877765432211      2


Q ss_pred             ceEEEEEEEEEecCCccccCCccccceEEEEeHhhHhcCCCcc
Q 039665          199 RKSDLFFVCMLRPRNFHIQKQDSEIAAAQWMQAEDYAAQPYVL  241 (275)
Q Consensus       199 ~~~~~~f~~~~~~~~~~~~~~~~E~~~~~Wv~~eel~~~~~~~  241 (275)
                      ....++|.|.............+|..++.|++++++......+
T Consensus        79 ~~~~~~f~~~~~~~~~~~~~~~~e~~~~~W~~~~~l~~~~~~~  121 (128)
T cd04684          79 HHLCVFYDARVVGGALPVQEPGEDSHGAAWLPLDEAIERLLSP  121 (128)
T ss_pred             cEEEEEEEEEEecCccccCCCCCCceeeEEECHHHhhccCCCH
Confidence            3455677776543322113456788899999999998765543

In general, members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity. They also contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which forms a structural motif that functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability

>cd04673 Nudix_Hydrolase_15 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.83  E-value=1.3e-19  Score=141.09  Aligned_cols=113  Identities=28%  Similarity=0.463  Sum_probs=85.0

Q ss_pred             eEEEEEEEeCCceEEEEEEecCCCCCCCceeCcceeccCCCCHHHHHHHHHHHHhCCCcceeEEEEEEeeeccc------
Q 039665          124 VGVGAFVMNNKRELLVVQENNGALKGTGVWKLPTGTIEEGEDICAAAVREVKEETGIDTEFVEVLAFRQSHRSF------  197 (275)
Q Consensus       124 v~v~~vv~~~~~~vLLv~r~~~~~~~~~~w~lPgG~ve~gEs~~~aA~REl~EEtGl~~~~~~~l~~~~~~~~~------  197 (275)
                      ++|+++++++ +++||++|++..  +++.|.||||++++||++.+||+||++||||+++.....++........      
T Consensus         1 ~~v~~ii~~~-~~vLl~~r~~~~--~~~~w~~PgG~ie~gE~~~~aa~RE~~EEtGl~~~~~~~~~~~~~~~~~~~~~~~   77 (122)
T cd04673           1 VAVGAVVFRG-GRVLLVRRANPP--DAGLWSFPGGKVELGETLEQAALRELLEETGLEAEVGRLLTVVDVIERDAAGRVE   77 (122)
T ss_pred             CcEEEEEEEC-CEEEEEEEcCCC--CCCeEECCCcccCCCCCHHHHHHHHHHHhhCcEeeeceeEEEEEEeeccCCCccc
Confidence            3577888875 789999998643  5689999999999999999999999999999998877777765543321      


Q ss_pred             cceEEEEEEEEEecCCccccCCccccceEEEEeHhhHhcCCCccc
Q 039665          198 FRKSDLFFVCMLRPRNFHIQKQDSEIAAAQWMQAEDYAAQPYVLK  242 (275)
Q Consensus       198 ~~~~~~~f~~~~~~~~~~~~~~~~E~~~~~Wv~~eel~~~~~~~~  242 (275)
                      .....+.|+|...  .... .+++|+.+++|++++++.++++...
T Consensus        78 ~~~~~~~~~~~~~--~~~~-~~~~E~~~~~w~~~~el~~~~~~~~  119 (122)
T cd04673          78 FHYVLIDFLCRYL--GGEP-VAGDDALDARWVPLDELAALSLTES  119 (122)
T ss_pred             eEEEEEEEEEEeC--CCcc-cCCcccceeEEECHHHHhhCcCCcc
Confidence            1233344555432  3333 3457889999999999999877643

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate

>cd04669 Nudix_Hydrolase_11 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.83  E-value=1.8e-19  Score=140.88  Aligned_cols=109  Identities=22%  Similarity=0.417  Sum_probs=82.4

Q ss_pred             EEEEEEeCCceEEEEEEecCCCCCCCceeCcceeccCCCCHHHHHHHHHHHHhCCCcceeEEEEEEeeeccccceEEEEE
Q 039665          126 VGAFVMNNKRELLVVQENNGALKGTGVWKLPTGTIEEGEDICAAAVREVKEETGIDTEFVEVLAFRQSHRSFFRKSDLFF  205 (275)
Q Consensus       126 v~~vv~~~~~~vLLv~r~~~~~~~~~~w~lPgG~ve~gEs~~~aA~REl~EEtGl~~~~~~~l~~~~~~~~~~~~~~~~f  205 (275)
                      |++++++++++|||++|.+.   +.+.|+||||++++||++.+||+||++||||+++....+++....    .+...++|
T Consensus         3 ~~~ii~~~~~~vLL~~r~~~---~~~~w~lPGG~ve~gEs~~~a~~REl~EEtGl~~~~~~~~~~~~~----~~~~~~~f   75 (121)
T cd04669           3 ASIVIINDQGEILLIRRIKP---GKTYYVFPGGGIEEGETPEEAAKREALEELGLDVRVEEIFLIVNQ----NGRTEHYF   75 (121)
T ss_pred             eEEEEEeCCCEEEEEEEecC---CCCcEECCceeccCCCCHHHHHHHHHHHhhCeeEeeeeEEEEEee----CCcEEEEE
Confidence            66788887789999998753   357999999999999999999999999999999977776665543    23446788


Q ss_pred             EEEEecCCcccc-------CCccccceEEEEeHhhHhcCCCcc
Q 039665          206 VCMLRPRNFHIQ-------KQDSEIAAAQWMQAEDYAAQPYVL  241 (275)
Q Consensus       206 ~~~~~~~~~~~~-------~~~~E~~~~~Wv~~eel~~~~~~~  241 (275)
                      +|..........       .++.+..++.|++++++..+++.+
T Consensus        76 ~~~~~~g~~~~~~~~e~~~~~~~~~~~~~Wv~~~el~~l~~~p  118 (121)
T cd04669          76 LARVISGKLGLGVGEEFERQSDDNQYHPVWVDLDQLETIPLRP  118 (121)
T ss_pred             EEEEECCeecCCCchhhcccCCCCceEEEEEEHHHcccCCCCC
Confidence            886543211110       113456679999999999987654

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate

>PLN02325 nudix hydrolase

Probab=99.83  E-value=9.3e-20  Score=146.90  Aligned_cols=116  Identities=23%  Similarity=0.356  Sum_probs=86.0

Q ss_pred             CCcceeEEEEEEEeCCceEEEEEEecCCCCCCCceeCcceeccCCCCHHHHHHHHHHHHhCCCcceeEEEEEEeeecc--
Q 039665          119 NASHRVGVGAFVMNNKRELLVVQENNGALKGTGVWKLPTGTIEEGEDICAAAVREVKEETGIDTEFVEVLAFRQSHRS--  196 (275)
Q Consensus       119 ~~~~~v~v~~vv~~~~~~vLLv~r~~~~~~~~~~w~lPgG~ve~gEs~~~aA~REl~EEtGl~~~~~~~l~~~~~~~~--  196 (275)
                      +++.+++|+++++++ ++|||+||.+.+  +.+.|.+|||+++.||++.+||+||++||||+++....+++.......  
T Consensus         5 ~~~p~~~v~~vi~~~-~~vLL~rr~~~~--~~g~W~lPGG~ve~gEs~~~aa~REv~EEtGl~v~~~~~l~~~~~~~~~~   81 (144)
T PLN02325          5 EPIPRVAVVVFLLKG-NSVLLGRRRSSI--GDSTFALPGGHLEFGESFEECAAREVKEETGLEIEKIELLTVTNNVFLEE   81 (144)
T ss_pred             CCCCeEEEEEEEEcC-CEEEEEEecCCC--CCCeEECCceeCCCCCCHHHHHHHHHHHHHCCCCcceEEEEEecceeecC
Confidence            346688898888884 699999987543  468999999999999999999999999999999998888877543221  


Q ss_pred             --ccceEEEEEEEEEecCCc-cccCCccccceEEEEeHhhHhcC
Q 039665          197 --FFRKSDLFFVCMLRPRNF-HIQKQDSEIAAAQWMQAEDYAAQ  237 (275)
Q Consensus       197 --~~~~~~~~f~~~~~~~~~-~~~~~~~E~~~~~Wv~~eel~~~  237 (275)
                        ..+...++|.|....... ....+++|..+++|+++++|...
T Consensus        82 ~~~~~~i~~~f~~~~~~~~~~~~~~e~~e~~~~~W~~~d~Lp~~  125 (144)
T PLN02325         82 PKPSHYVTVFMRAVLADPSQVPQNLEPEKCYGWDWYEWDNLPEP  125 (144)
T ss_pred             CCCcEEEEEEEEEEECCCCCCCCcCCchhcCceEEEChHHCChh
Confidence              122344556665432221 22234456788999999998864

>cd03675 Nudix_Hydrolase_2 Contains a crystal structure of the Nudix hydrolase from Nitrosomonas europaea, which has an unknown function

Probab=99.83  E-value=3.1e-19  Score=141.63  Aligned_cols=127  Identities=29%  Similarity=0.321  Sum_probs=90.2

Q ss_pred             EEEEEEEeCCceEEEEEEecCCCCCCCceeCcceeccCCCCHHHHHHHHHHHHhCCCcceeEEEEEEeeeccc--cceEE
Q 039665          125 GVGAFVMNNKRELLVVQENNGALKGTGVWKLPTGTIEEGEDICAAAVREVKEETGIDTEFVEVLAFRQSHRSF--FRKSD  202 (275)
Q Consensus       125 ~v~~vv~~~~~~vLLv~r~~~~~~~~~~w~lPgG~ve~gEs~~~aA~REl~EEtGl~~~~~~~l~~~~~~~~~--~~~~~  202 (275)
                      +|++++.+ ++++||++|.+.   +++.|.+|||++++||++.+||.||++||||+++....+++........  .....
T Consensus         2 ~v~~ii~~-~~~vLlv~r~~~---~~~~w~~PgG~ve~gEs~~~aa~REl~EEtGl~~~~~~~~~~~~~~~~~~~~~~~~   77 (134)
T cd03675           2 TVAAVVER-DGRFLLVEEETD---GGLVFNQPAGHLEPGESLIEAAVRETLEETGWHVEPTALLGIYQWTAPDSDTTYLR   77 (134)
T ss_pred             eEEEEEEE-CCEEEEEEEccC---CCceEECCCccCCCCCCHHHHHHHHHHHHHCcccccceEEEEEEeecCCCCeeEEE
Confidence            46566555 679999999764   4689999999999999999999999999999999877777655433222  12233


Q ss_pred             EEEEEEEecCCccccCCccccceEEEEeHhhHhcCCCcccchHHHHHHHHHHhh
Q 039665          203 LFFVCMLRPRNFHIQKQDSEIAAAQWMQAEDYAAQPYVLKHQMFNYICQICLTK  256 (275)
Q Consensus       203 ~~f~~~~~~~~~~~~~~~~E~~~~~Wv~~eel~~~~~~~~~~~~~~~~~~~~~~  256 (275)
                      ++|++.+...... ...++|+.++.|++++++..+......+.+.+.+..++..
T Consensus        78 ~~f~~~~~~~~~~-~~~~~e~~~~~w~~~~el~~~~~~~~~~~~~~~i~~~l~~  130 (134)
T cd03675          78 FAFAAELLEHLPD-QPLDSGIVRAHWLTLEEILALAARLRSPLVLRCIEDYLAG  130 (134)
T ss_pred             EEEEEEECCCCCC-CCCCCCceeeEEEeHHHHHhhhhhhcCchHHHHHHHHHhc
Confidence            4566655432211 1245688999999999999986433334566666666644

In general, members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity. They also contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which forms a structural motif that functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability,

>cd04696 Nudix_Hydrolase_37 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.83  E-value=1.3e-19  Score=142.27  Aligned_cols=112  Identities=25%  Similarity=0.400  Sum_probs=82.7

Q ss_pred             eEEEEEEEeCCceEEEEEEecCCCCCCCceeCcceeccCCCCHHHHHHHHHHHHhCCCcceeEEEEEEeeecc--cc---
Q 039665          124 VGVGAFVMNNKRELLVVQENNGALKGTGVWKLPTGTIEEGEDICAAAVREVKEETGIDTEFVEVLAFRQSHRS--FF---  198 (275)
Q Consensus       124 v~v~~vv~~~~~~vLLv~r~~~~~~~~~~w~lPgG~ve~gEs~~~aA~REl~EEtGl~~~~~~~l~~~~~~~~--~~---  198 (275)
                      ++|+++|+|.+++|||+|+.+    .++.|.+|||++++||++.+||+||++||||+++....+++.....+.  ..   
T Consensus         3 ~~v~~~i~~~~~~iLL~r~~~----~~~~w~lPGG~ve~gEs~~~aa~REl~EEtGl~~~~~~~~~~~~~~~~~~~~~~~   78 (125)
T cd04696           3 VTVGALIYAPDGRILLVRTTK----WRGLWGVPGGKVEWGETLEEALKREFREETGLKLRDIKFAMVQEAIFSEEFHKPA   78 (125)
T ss_pred             cEEEEEEECCCCCEEEEEccC----CCCcEeCCceeccCCCCHHHHHHHHHHHHhCCcccccceEEEEEEeccCCCCCcc
Confidence            568889999889999998753    468999999999999999999999999999999887776654332221  11   


Q ss_pred             ceEEEEEEEEEecCCccccCCccccceEEEEeHhhHhcCCCccc
Q 039665          199 RKSDLFFVCMLRPRNFHIQKQDSEIAAAQWMQAEDYAAQPYVLK  242 (275)
Q Consensus       199 ~~~~~~f~~~~~~~~~~~~~~~~E~~~~~Wv~~eel~~~~~~~~  242 (275)
                      ....+.|.+...  ...+. .++|+.+++|++++++.++++...
T Consensus        79 ~~~~~~~~~~~~--~~~~~-~~~e~~~~~W~~~~el~~~~~~~~  119 (125)
T cd04696          79 HFVLFDFFARTD--GTEVT-PNEEIVEWEWVTPEEALDYPLNSF  119 (125)
T ss_pred             EEEEEEEEEEec--CCccc-CCcccceeEEECHHHHhcCCCCHH
Confidence            122233444432  22333 346889999999999999877554

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate

>cd03674 Nudix_Hydrolase_1 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.83  E-value=1.9e-19  Score=143.92  Aligned_cols=120  Identities=23%  Similarity=0.387  Sum_probs=84.0

Q ss_pred             eEEEEEEEeCC-ceEEEEEEecCCCCCCCceeCcceeccCCCCHHHHHHHHHHHHhCCCcceeEEEEE-----Eeeeccc
Q 039665          124 VGVGAFVMNNK-RELLVVQENNGALKGTGVWKLPTGTIEEGEDICAAAVREVKEETGIDTEFVEVLAF-----RQSHRSF  197 (275)
Q Consensus       124 v~v~~vv~~~~-~~vLLv~r~~~~~~~~~~w~lPgG~ve~gEs~~~aA~REl~EEtGl~~~~~~~l~~-----~~~~~~~  197 (275)
                      .+|+++++|++ ++|||++|++     .+.|.+|||++++||++.+||+||++||||+++..+...++     ....+..
T Consensus         3 ~~~~~~v~~~~~~~vLLv~r~~-----~~~w~lPgG~ve~gE~~~~aa~REl~EEtGl~~~~~~~~~~~~~~~~~~~~~~   77 (138)
T cd03674           3 FTASAFVVNPDRGKVLLTHHRK-----LGSWLQPGGHIDPDESLLEAALRELREETGIELLGLRPLSVLVDLDVHPIDGH   77 (138)
T ss_pred             EEEEEEEEeCCCCeEEEEEEcC-----CCcEECCceecCCCCCHHHHHHHHHHHHHCCCcccceeccccccceeEeecCC
Confidence            35788999977 8999999873     47899999999999999999999999999998776655431     1111111


Q ss_pred             -------cceEEEEEEEEEecCCcccc-CCccccceEEEEeHhhHhcCCCcccchHHHHHHHHH
Q 039665          198 -------FRKSDLFFVCMLRPRNFHIQ-KQDSEIAAAQWMQAEDYAAQPYVLKHQMFNYICQIC  253 (275)
Q Consensus       198 -------~~~~~~~f~~~~~~~~~~~~-~~~~E~~~~~Wv~~eel~~~~~~~~~~~~~~~~~~~  253 (275)
                             ......+|+|....  +... .+++|..+++|++++++..+++...   .+.+++.+
T Consensus        78 ~~~~~~~~~~~~~~y~~~~~~--~~~~~~~~~E~~~~~W~~~~el~~~~~~~~---~~~~i~~~  136 (138)
T cd03674          78 PKRGVPGHLHLDLRFLAVAPA--DDVAPPKSDESDAVRWFPLDELASLELPED---VRRLVEKA  136 (138)
T ss_pred             CCCCCCCcEEEEEEEEEEccC--ccccCCCCCcccccEEEcHHHhhhccCCHH---HHHHHHHH
Confidence                   11233456665432  2322 2567999999999999987765443   44444443

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity. They also contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, U=I, L or V), which forms a structural motif that functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamil

>cd03672 Dcp2p mRNA decapping enzyme 2 (Dcp2p), the catalytic subunit, and Dcp1p are the two components of the decapping enzyme complex

Probab=99.83  E-value=6.3e-20  Score=148.03  Aligned_cols=127  Identities=21%  Similarity=0.264  Sum_probs=85.0

Q ss_pred             EEEEEEEeCC-ceEEEEEEecCCCCCCCceeCcceeccCCCCHHHHHHHHHHHHhCCCcceeEEEEEEeeeccccceEEE
Q 039665          125 GVGAFVMNNK-RELLVVQENNGALKGTGVWKLPTGTIEEGEDICAAAVREVKEETGIDTEFVEVLAFRQSHRSFFRKSDL  203 (275)
Q Consensus       125 ~v~~vv~~~~-~~vLLv~r~~~~~~~~~~w~lPgG~ve~gEs~~~aA~REl~EEtGl~~~~~~~l~~~~~~~~~~~~~~~  203 (275)
                      .+++++++++ ++|||+|+++     .+.|+||||++++||++.+||+||++||||+.+........ +......+...+
T Consensus         3 ~~gaii~~~~~~~vLLvr~~~-----~~~W~lPGG~ve~gEs~~~AA~REl~EETGl~v~~~~~~~~-~~~~~~~~~~~~   76 (145)
T cd03672           3 VYGAIILNEDLDKVLLVKGWK-----SKSWSFPKGKINKDEDDHDCAIREVYEETGFDISKYIDKDD-YIELIIRGQNVK   76 (145)
T ss_pred             eeEEEEEeCCCCEEEEEEecC-----CCCEECCCccCCCCcCHHHHHHHHHHHhhCccceeccccce-eeecccCCcEEE
Confidence            4778888865 6999999873     24899999999999999999999999999998865322111 111222234445


Q ss_pred             EEEEEEecCCccccC-CccccceEEEEeHhhHhcCCCcc-------cchHHHHHHHHHHhhc
Q 039665          204 FFVCMLRPRNFHIQK-QDSEIAAAQWMQAEDYAAQPYVL-------KHQMFNYICQICLTKS  257 (275)
Q Consensus       204 ~f~~~~~~~~~~~~~-~~~E~~~~~Wv~~eel~~~~~~~-------~~~~~~~~~~~~~~~~  257 (275)
                      +|++........... +++|+.+++|++++++.++....       ...+++.++.-+..++
T Consensus        77 ~f~~~~~~~~~~~~~~~~~E~~~~~Wv~~~el~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  138 (145)
T cd03672          77 LYIVPGVPEDTPFEPKTRKEISKIEWFDIKDLPTKKNKKIPGLNSNKFFMVIPFIKPLKKWI  138 (145)
T ss_pred             EEEEecCCCCcccCcCChhhhheEEEeeHHHhhhhhhhccccccccceEEEhHHHHHHHHHH
Confidence            666643222222222 35789999999999999875543       2334555555544443

Decapping is a key step in both general and nonsense-mediated 5'-3' mRNA-decay pathways. Dcp2p contains an all-alpha helical N-terminal domain and a C-terminal domain which has the Nudix fold. While decapping is not dependent on the N-terminus of Dcp2p, it does affect its efficiency. Dcp1p binds the N-terminal domain of Dcp2p stimulating the decapping activity of Dcp2p. Decapping permits the degradation of the transcript and is a site of numerous control inputs. It is responsible for nonsense-mediated decay as well as AU-rich element (ARE)-mediated decay. In addition, it may also play a role in the levels of mRNA. Enzymes belonging to the Nudix superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and are recognized by a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V).

>cd04683 Nudix_Hydrolase_24 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.82  E-value=1.9e-19  Score=140.08  Aligned_cols=112  Identities=23%  Similarity=0.362  Sum_probs=81.9

Q ss_pred             EEEEEEEeCCceEEEEEEecCCCCCCCceeCcceeccCCCCHHHHHHHHHHHHhCCCcc--eeEEEEEEeeeccc-cceE
Q 039665          125 GVGAFVMNNKRELLVVQENNGALKGTGVWKLPTGTIEEGEDICAAAVREVKEETGIDTE--FVEVLAFRQSHRSF-FRKS  201 (275)
Q Consensus       125 ~v~~vv~~~~~~vLLv~r~~~~~~~~~~w~lPgG~ve~gEs~~~aA~REl~EEtGl~~~--~~~~l~~~~~~~~~-~~~~  201 (275)
                      +|.+++++ +++|||+||.+.+. .++.|.+|||++++||++.+||+||++||||+.+.  .+.+++........ ....
T Consensus         2 ~v~~vi~~-~~~vLL~~r~~~~~-~~~~w~lPgG~ve~gE~~~~aa~REl~EEtGl~v~~~~~~~~~~~~~~~~~~~~~~   79 (120)
T cd04683           2 AVYVLLRR-DDEVLLQRRANTGY-MDGQWALPAGHLEKGEDAVTAAVREAREEIGVTLDPEDLRLAHTMHRRTEDIESRI   79 (120)
T ss_pred             cEEEEEEE-CCEEEEEEccCCCC-CCCeEeCCccccCCCCCHHHHHHHHHHHHHCCccChhheEEEEEEEecCCCCceEE
Confidence            46677766 57999999986543 57999999999999999999999999999999986  55566655443332 2344


Q ss_pred             EEEEEEEEecCCccccCCccccceEEEEeHhhHhcCCC
Q 039665          202 DLFFVCMLRPRNFHIQKQDSEIAAAQWMQAEDYAAQPY  239 (275)
Q Consensus       202 ~~~f~~~~~~~~~~~~~~~~E~~~~~Wv~~eel~~~~~  239 (275)
                      .++|.|..... .....+++|+.+++|++++++.....
T Consensus        80 ~~~f~~~~~~~-~~~~~~~~e~~~~~W~~~~~l~~~~~  116 (120)
T cd04683          80 GLFFTVRRWSG-EPRNCEPDKCAELRWFPLDALPDDTV  116 (120)
T ss_pred             EEEEEEEeecC-ccccCCCCcEeeEEEEchHHCcchhc
Confidence            55666644321 12223457889999999999987543

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate

>cd04697 Nudix_Hydrolase_38 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.82  E-value=1.1e-19  Score=143.00  Aligned_cols=113  Identities=22%  Similarity=0.285  Sum_probs=88.3

Q ss_pred             EEEEEEEeCCceEEEEEEecCCCCCCCceeC-cceeccCCCCHHHHHHHHHHHHhCCCcceeEEEEEEeeeccccceEEE
Q 039665          125 GVGAFVMNNKRELLVVQENNGALKGTGVWKL-PTGTIEEGEDICAAAVREVKEETGIDTEFVEVLAFRQSHRSFFRKSDL  203 (275)
Q Consensus       125 ~v~~vv~~~~~~vLLv~r~~~~~~~~~~w~l-PgG~ve~gEs~~~aA~REl~EEtGl~~~~~~~l~~~~~~~~~~~~~~~  203 (275)
                      ++.++++|.+++|||++|...+...+|.|++ |||++++||++.+||+||++||||+.+..+..++.+...........+
T Consensus         2 ~~~v~i~~~~~~iLl~~R~~~~~~~~g~w~~~~GG~ve~gE~~~~aa~REl~EEtGl~~~~l~~~~~~~~~~~~~~~~~~   81 (126)
T cd04697           2 ATYIFVFNSEGKLCVHKRTLTKDWCPGYWDIAFGGVVQAGESYLQNAQRELEEELGIDGVQLTPLGLFYYDTDGNRVWGK   81 (126)
T ss_pred             eEEEEEEcCCCeEEEEECCCCCCCCCCcccCcCCcccCCCCCHHHHHHHHHHHHHCCCccccEEeeEEEecCCCceEEEE
Confidence            4678999999999999887665556899999 699999999999999999999999999877777665544333333445


Q ss_pred             EEEEEEecCCccccCCccccceEEEEeHhhHhcCCCc
Q 039665          204 FFVCMLRPRNFHIQKQDSEIAAAQWMQAEDYAAQPYV  240 (275)
Q Consensus       204 ~f~~~~~~~~~~~~~~~~E~~~~~Wv~~eel~~~~~~  240 (275)
                      +|.+...   .....+++|+.+++|++++++.++...
T Consensus        82 ~f~~~~~---~~~~~~~~E~~~~~w~~~~el~~~~~~  115 (126)
T cd04697          82 VFSCVYD---GPLKLQEEEVEEITWLSINEILQFKEG  115 (126)
T ss_pred             EEEEEEC---CCCCCCHhHhhheEEcCHHHHHHHhhc
Confidence            6666442   344556789999999999999987543

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate

>cd03426 CoAse Coenzyme A pyrophosphatase (CoAse), a member of the Nudix hydrolase superfamily, functions to catalyze the elimination of oxidized inactive CoA, which can inhibit CoA-utilizing enzymes

Probab=99.82  E-value=1.4e-19  Score=147.96  Aligned_cols=114  Identities=20%  Similarity=0.214  Sum_probs=89.2

Q ss_pred             EEEEEEEeCC--ceEEEEEEecCCCCCCCceeCcceeccCC-CCHHHHHHHHHHHHhCCCcceeEEEEEEeeeccccceE
Q 039665          125 GVGAFVMNNK--RELLVVQENNGALKGTGVWKLPTGTIEEG-EDICAAAVREVKEETGIDTEFVEVLAFRQSHRSFFRKS  201 (275)
Q Consensus       125 ~v~~vv~~~~--~~vLLv~r~~~~~~~~~~w~lPgG~ve~g-Es~~~aA~REl~EEtGl~~~~~~~l~~~~~~~~~~~~~  201 (275)
                      +|.+++.+.+  ++|||+||.......+|.|+||||++++| |++.+||+||++||||+++..+..++.........+..
T Consensus         4 av~v~l~~~~~~~~vLL~~R~~~~~~~~g~w~lPGG~ve~gdEs~~eaa~REl~EEtGl~~~~~~~l~~~~~~~~~~~~~   83 (157)
T cd03426           4 AVLVLLVEREGELRVLLTKRASHLRSHPGQVAFPGGKVDPGDEDPVATALREAEEEIGLPPDSVEVLGRLPPYYTRSGFV   83 (157)
T ss_pred             EEEEEEEeCCCceEEEEEEcccccccCCCcEECCCCCcCCCcCCHHHHHHHHHHHHhCCCccceEEEEECCCccccCCCE
Confidence            4556666644  68999999876544689999999999999 99999999999999999998888887765444433455


Q ss_pred             EEEEEEEEecCCccccCCccccceEEEEeHhhHhcCCC
Q 039665          202 DLFFVCMLRPRNFHIQKQDSEIAAAQWMQAEDYAAQPY  239 (275)
Q Consensus       202 ~~~f~~~~~~~~~~~~~~~~E~~~~~Wv~~eel~~~~~  239 (275)
                      .++|++..... ..+.++++|+.++.|++++++.+...
T Consensus        84 v~~~~~~~~~~-~~~~~~~~E~~~~~W~~~~el~~~~~  120 (157)
T cd03426          84 VTPVVGLVPPP-LPLVLNPDEVAEVFEVPLSFLLDPAN  120 (157)
T ss_pred             EEEEEEEECCC-CCCCCCHHHhheeEEEcHHHHhCcCC
Confidence            56677765432 34556778999999999999998744

The need of CoAses mainly arises under conditions of oxidative stress. CoAse has a conserved Nudix fold and requires a single divalent cation for catalysis. In addition to a signature Nudix motif G[X5]E[X7]REUXEEXGU, where U is Ile, Leu, or Val, CoAse contains an additional motif upstream called the NuCoA motif (LLTXT(SA)X3RX3GX3FPGG) which is postulated to be involved in CoA recognition. CoA plays a central role in lipid metabolism. It is involved in the initial steps of fatty acid sythesis in the cytosol, in the oxidation of fatty acids and the citric acid cycle in the mitochondria, and in the oxidation of long-chain fatty acids in peroxisomes. CoA has the important role of activating fatty acids for further modification into key biological signalling molecules.

>cd04681 Nudix_Hydrolase_22 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.82  E-value=1.8e-19  Score=142.25  Aligned_cols=107  Identities=32%  Similarity=0.587  Sum_probs=82.1

Q ss_pred             EEEEEEEeCCceEEEEEEecCCCCCCCceeCcceeccCCCCHHHHHHHHHHHHhCCCcceeEEEEEEeeeccc----cce
Q 039665          125 GVGAFVMNNKRELLVVQENNGALKGTGVWKLPTGTIEEGEDICAAAVREVKEETGIDTEFVEVLAFRQSHRSF----FRK  200 (275)
Q Consensus       125 ~v~~vv~~~~~~vLLv~r~~~~~~~~~~w~lPgG~ve~gEs~~~aA~REl~EEtGl~~~~~~~l~~~~~~~~~----~~~  200 (275)
                      +|++++++.+++|||++|.+.+  .++.|.+|||+++.||++.+||.||++||||+++..+..++........    ...
T Consensus         3 av~~~i~~~~~~vLL~~r~~~~--~~~~w~~PgG~ve~gEs~~~aa~RE~~EEtGl~~~~~~~~~~~~~~~~~~~~~~~~   80 (130)
T cd04681           3 AVGVLILNEDGELLVVRRAREP--GKGTLDLPGGFVDPGESAEEALIREIREETGLKVTELSYLFSLPNTYPYGGMEYDT   80 (130)
T ss_pred             eEEEEEEcCCCcEEEEEecCCC--CCCcEeCCceeecCCCCHHHHHHHHHHHHhCCcccceeEEEeecceeeeCCceeEE
Confidence            5778889988999999997654  4689999999999999999999999999999999888877654322211    112


Q ss_pred             EEEEEEEEEecCCccccCCccccceEEEEeHhhHh
Q 039665          201 SDLFFVCMLRPRNFHIQKQDSEIAAAQWMQAEDYA  235 (275)
Q Consensus       201 ~~~~f~~~~~~~~~~~~~~~~E~~~~~Wv~~eel~  235 (275)
                      ..++|+|.+..  .....+.+|+.+++|++++++.
T Consensus        81 ~~~~~~~~~~~--~~~~~~~~e~~~~~W~~~~el~  113 (130)
T cd04681          81 LDLFFVCQVDD--KPIVKAPDDVAELKWVVPQDIE  113 (130)
T ss_pred             EEEEEEEEeCC--CCCcCChHHhheeEEecHHHCC
Confidence            33466676542  2334456799999999999985

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate

>PRK15472 nucleoside triphosphatase NudI; Provisional

Probab=99.82  E-value=2.7e-19  Score=143.44  Aligned_cols=117  Identities=19%  Similarity=0.276  Sum_probs=78.4

Q ss_pred             EEEEEEeCCceEEEEEEecCCCCCCCceeCcceeccCCCCHHHHHHHHHHHHhCCCcceeEEEEEEe------eec--cc
Q 039665          126 VGAFVMNNKRELLVVQENNGALKGTGVWKLPTGTIEEGEDICAAAVREVKEETGIDTEFVEVLAFRQ------SHR--SF  197 (275)
Q Consensus       126 v~~vv~~~~~~vLLv~r~~~~~~~~~~w~lPgG~ve~gEs~~~aA~REl~EEtGl~~~~~~~l~~~~------~~~--~~  197 (275)
                      +.+.+++.+++|||+||...+...+|.|++|||++++||++.+||+||++||||+++....+.....      ..+  ..
T Consensus         6 ~~~~ii~~~~~vLl~~R~~~~~~~~g~W~lPgG~ve~gEs~~~aa~REl~EEtGl~~~~~~~~~~~~~~~~~~~~~~~~~   85 (141)
T PRK15472          6 IVCPLIQNDGAYLLCKMADDRGVFPGQWALSGGGVEPGERIEEALRREIREELGEQLLLTEITPWTFRDDIRTKTYADGR   85 (141)
T ss_pred             EEEEEEecCCEEEEEEecccCCCCCCceeCCcccCCCCCCHHHHHHHHHHHHHCCceeeeeeccccccccceeEEecCCC
Confidence            3344555578999999876554568999999999999999999999999999999875433221100      011  11


Q ss_pred             cceEEEEE-EEEEecCCccccCCccccceEEEEeHhhHhcCCCcccc
Q 039665          198 FRKSDLFF-VCMLRPRNFHIQKQDSEIAAAQWMQAEDYAAQPYVLKH  243 (275)
Q Consensus       198 ~~~~~~~f-~~~~~~~~~~~~~~~~E~~~~~Wv~~eel~~~~~~~~~  243 (275)
                      .....++| ++.+......+. .++|+.+++|++++|+.++++...+
T Consensus        86 ~~~~~~~~~~~~~~~~~~~~~-~~~E~~~~~w~~~~el~~l~~~~~~  131 (141)
T PRK15472         86 KEEIYMIYLIFDCVSANRDVK-INEEFQDYAWVKPEDLVHYDLNVAT  131 (141)
T ss_pred             ceeEEEEEEEEEeecCCCccc-CChhhheEEEccHHHhccccccHHH
Confidence            11222222 223333333433 3478999999999999999776553

>cd03427 MTH1 MutT homolog-1 (MTH1) is a member of the Nudix hydrolase superfamily

Probab=99.82  E-value=4.4e-19  Score=141.23  Aligned_cols=120  Identities=23%  Similarity=0.327  Sum_probs=86.8

Q ss_pred             EEEEEEeCCceEEEEEEecCCCCCCCceeCcceeccCCCCHHHHHHHHHHHHhCCCcceeEEEEEEeeeccc--cceEEE
Q 039665          126 VGAFVMNNKRELLVVQENNGALKGTGVWKLPTGTIEEGEDICAAAVREVKEETGIDTEFVEVLAFRQSHRSF--FRKSDL  203 (275)
Q Consensus       126 v~~vv~~~~~~vLLv~r~~~~~~~~~~w~lPgG~ve~gEs~~~aA~REl~EEtGl~~~~~~~l~~~~~~~~~--~~~~~~  203 (275)
                      +.+++.+ ++++||++|.+.+  ..+.|.+|||++++||++.+||+||++||||+.+....+++.+......  .....+
T Consensus         4 ~~~~i~~-~~~vLL~~r~~~~--~~~~w~~PgG~ve~gEs~~~aa~RE~~EEtGl~~~~~~~~~~~~~~~~~~~~~~~~~   80 (137)
T cd03427           4 TLCFIKD-PDKVLLLNRKKGP--GWGGWNGPGGKVEPGETPEECAIRELKEETGLTIDNLKLVGIIKFPFPGEEERYGVF   80 (137)
T ss_pred             EEEEEEE-CCEEEEEEecCCC--CCCeEeCCceeCCCCCCHHHHHHHHHHHhhCeEeecceEEEEEEEEcCCCCcEEEEE
Confidence            3355555 4899999998654  5789999999999999999999999999999999888888776654432  233444


Q ss_pred             EEEEEEecCCccccCCccccceEEEEeHhhHhcCCCcccchHHHHHHHHHH
Q 039665          204 FFVCMLRPRNFHIQKQDSEIAAAQWMQAEDYAAQPYVLKHQMFNYICQICL  254 (275)
Q Consensus       204 ~f~~~~~~~~~~~~~~~~E~~~~~Wv~~eel~~~~~~~~~~~~~~~~~~~~  254 (275)
                      +|+|..  ...... ...|..+++|++++++.++++...   .+.++..++
T Consensus        81 ~f~~~~--~~~~~~-~~~e~~~~~W~~~~el~~~~~~~~---~~~~l~~~~  125 (137)
T cd03427          81 VFLATE--FEGEPL-KESEEGILDWFDIDDLPLLPMWPG---DREWLPLML  125 (137)
T ss_pred             EEEECC--cccccC-CCCccccceEEcHhhcccccCCCC---cHHHHHHHh
Confidence            555532  233332 345667899999999998766554   334445544

MTH1, the mammalian counterpart of MutT, hydrolyzes oxidized purine nucleoside triphosphates, such as 8-oxo-dGTP and 2-hydroxy-ATP, to monophosphates, thereby preventing the incorporation of such oxygen radicals during replication. This is an important step in the repair mechanism in genomic and mitochondrial DNA. Like other members of the Nudix family, it requires a divalent cation, such as Mg2+ or Mn2+, for activity, and contain the Nudix motif, a highly conserved 23-residue block (GX5EX7REUXEEXGU, where U = I, L or V), that functions as a metal binding and catalytic site. MTH1 is predominantly localized in the cytoplasm and mitochondria. Structurally, this enzyme adopts a similar fold to MutT despite low sequence similarity outside the conserved nudix motif. The most distinctive structural difference between MutT and MTH1 is the presence of a beta-hairpin, which is absent in MutT. This results in a m

>PRK10729 nudF ADP-ribose pyrophosphatase NudF; Provisional

Probab=99.81  E-value=2e-19  Score=152.55  Aligned_cols=118  Identities=16%  Similarity=0.101  Sum_probs=96.1

Q ss_pred             EEEEEEEeC-CceEEEEEEecCCCC----CCCceeCcceeccCCCCHHHHHHHHHHHHhCCCcceeEEEEEEeeeccccc
Q 039665          125 GVGAFVMNN-KRELLVVQENNGALK----GTGVWKLPTGTIEEGEDICAAAVREVKEETGIDTEFVEVLAFRQSHRSFFR  199 (275)
Q Consensus       125 ~v~~vv~~~-~~~vLLv~r~~~~~~----~~~~w~lPgG~ve~gEs~~~aA~REl~EEtGl~~~~~~~l~~~~~~~~~~~  199 (275)
                      +|+++++++ +++|||++|+|.+..    .+..|++|+|.+|+||++.+||+|||.||||+.+..+..++.++..++..+
T Consensus        51 ~V~il~~~~~~~~vlLvrQyR~~~~~~~~~~~~lE~PAG~vd~gE~p~~aA~REL~EETGy~a~~~~~l~~~~~spg~~~  130 (202)
T PRK10729         51 AAVLLPFDPVRDEVVLIEQIRIAAYDTSETPWLLEMVAGMIEEGESVEDVARREAIEEAGLIVGRTKPVLSYLASPGGTS  130 (202)
T ss_pred             eEEEEEEECCCCEEEEEEeeecccccCCCCCeEEEccceEcCCCCCHHHHHHHHHHHHhCceeeEEEEEEEEEcCCCcCc
Confidence            577788886 479999999987642    236899999999999999999999999999999999999988888888888


Q ss_pred             eEEEEEEEEEecC---CccccCCccccceEEEEeHhhHhcCCCccc
Q 039665          200 KSDLFFVCMLRPR---NFHIQKQDSEIAAAQWMQAEDYAAQPYVLK  242 (275)
Q Consensus       200 ~~~~~f~~~~~~~---~~~~~~~~~E~~~~~Wv~~eel~~~~~~~~  242 (275)
                      ...++|++.....   ......+++|..++.|++++++.++.....
T Consensus       131 e~~~~fla~~~~~~~~~~~~~~de~E~i~v~~~~~~e~~~~~~~G~  176 (202)
T PRK10729        131 ERSSIMVGEVDATTASGIHGLADENEDIRVHVVSREQAYQWVEEGK  176 (202)
T ss_pred             eEEEEEEEEEcchhcccCCCCCCCCCceEEEEEcHHHHHHHHHcCC
Confidence            8999999975321   111234667888999999999998865543

>cd04691 Nudix_Hydrolase_32 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.81  E-value=3.5e-19  Score=138.45  Aligned_cols=107  Identities=25%  Similarity=0.319  Sum_probs=80.7

Q ss_pred             EEEEEEeCCceEEEEEEecCCCCCCCceeCcceeccCCCCHHHHHHHHHHHHhCCCcceeEEEEEEeeeccccceEEEEE
Q 039665          126 VGAFVMNNKRELLVVQENNGALKGTGVWKLPTGTIEEGEDICAAAVREVKEETGIDTEFVEVLAFRQSHRSFFRKSDLFF  205 (275)
Q Consensus       126 v~~vv~~~~~~vLLv~r~~~~~~~~~~w~lPgG~ve~gEs~~~aA~REl~EEtGl~~~~~~~l~~~~~~~~~~~~~~~~f  205 (275)
                      |+++++++ ++|||+||.+.+...++.|+||||++++||++.+||+||++||||+++.....++....... .....++|
T Consensus         3 v~~vi~~~-~~vLL~rR~~~~~~~~g~w~lPgG~ve~gE~~~~aa~REl~EEtGl~~~~~~~l~~~~~~~~-~~~~~~~~   80 (117)
T cd04691           3 VVGVLFSD-DKVLLERRSLTKNADPGKLNIPGGHIEAGESQEEALLREVQEELGVDPLSYTYLCSLYHPTS-ELQLLHYY   80 (117)
T ss_pred             EEEEEEEC-CEEEEEEeCCCCCCCCCeEECcceeecCCCCHHHHHHHHHHHHHCCCcccceEEEEEeccCC-CeEEEEEE
Confidence            45566664 89999999765434689999999999999999999999999999999766666665544333 33455666


Q ss_pred             EEEEecCCccccCCccccceEEEEeHhhHhcCC
Q 039665          206 VCMLRPRNFHIQKQDSEIAAAQWMQAEDYAAQP  238 (275)
Q Consensus       206 ~~~~~~~~~~~~~~~~E~~~~~Wv~~eel~~~~  238 (275)
                      ++...  .+.+  ..+|+.++.|++++++..+.
T Consensus        81 ~~~~~--~~~~--~~~E~~~~~W~~~~~l~~~~  109 (117)
T cd04691          81 VVTFW--QGEI--PAQEAAEVHWMTANDIVLAS  109 (117)
T ss_pred             EEEEe--cCCC--CcccccccEEcCHHHcchhh
Confidence            66443  2232  34789999999999998654

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate

>cd04677 Nudix_Hydrolase_18 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.81  E-value=2.9e-19  Score=141.20  Aligned_cols=112  Identities=26%  Similarity=0.418  Sum_probs=82.1

Q ss_pred             ceeEEEEEEEeCCceEEEEEEecCCCCCCCceeCcceeccCCCCHHHHHHHHHHHHhCCCcceeEEEEEEeee---c--c
Q 039665          122 HRVGVGAFVMNNKRELLVVQENNGALKGTGVWKLPTGTIEEGEDICAAAVREVKEETGIDTEFVEVLAFRQSH---R--S  196 (275)
Q Consensus       122 ~~v~v~~vv~~~~~~vLLv~r~~~~~~~~~~w~lPgG~ve~gEs~~~aA~REl~EEtGl~~~~~~~l~~~~~~---~--~  196 (275)
                      +.++|++++++.+++|||++|..     .+.|.||||++++||++.+||+||++||||+.+.....++.+...   .  .
T Consensus         6 ~~~~~~~~v~~~~~~vLL~~r~~-----~~~w~~PgG~v~~gEt~~~aa~REl~EE~Gi~~~~~~~~~~~~~~~~~~~~~   80 (132)
T cd04677           6 ILVGAGVILLNEQGEVLLQKRSD-----TGDWGLPGGAMELGESLEETARRELKEETGLEVEELELLGVYSGKEFYVKPN   80 (132)
T ss_pred             cccceEEEEEeCCCCEEEEEecC-----CCcEECCeeecCCCCCHHHHHHHHHHHHhCCeeeeeEEEEEecCCceeecCC
Confidence            45678888999889999998873     278999999999999999999999999999999888777644211   1  1


Q ss_pred             c--cceE-EEEEEEEEecCCccccCCccccceEEEEeHhhHhcCCCc
Q 039665          197 F--FRKS-DLFFVCMLRPRNFHIQKQDSEIAAAQWMQAEDYAAQPYV  240 (275)
Q Consensus       197 ~--~~~~-~~~f~~~~~~~~~~~~~~~~E~~~~~Wv~~eel~~~~~~  240 (275)
                      .  .... .++|++..  ....+..+.+|..+++|++++++.++...
T Consensus        81 ~~~~~~~~~~~~~~~~--~~~~~~~~~~e~~~~~W~~~~e~~~~~~~  125 (132)
T cd04677          81 GDDEQYIVTLYYVTKV--FGGKLVPDGDETLELKFFSLDELPELINP  125 (132)
T ss_pred             CCcEEEEEEEEEEEec--cCCcccCCCCceeeEEEEChhHCccchhH
Confidence            1  1112 23333322  22333456778999999999999887544

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate

>cd04687 Nudix_Hydrolase_28 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.81  E-value=8.3e-19  Score=138.22  Aligned_cols=114  Identities=26%  Similarity=0.473  Sum_probs=82.0

Q ss_pred             eEEEEEEEeCCceEEEEEEecCCCCCCCceeCcceeccCCCCHHHHHHHHHHHHhCCCcceeEEEEEEeeec--------
Q 039665          124 VGVGAFVMNNKRELLVVQENNGALKGTGVWKLPTGTIEEGEDICAAAVREVKEETGIDTEFVEVLAFRQSHR--------  195 (275)
Q Consensus       124 v~v~~vv~~~~~~vLLv~r~~~~~~~~~~w~lPgG~ve~gEs~~~aA~REl~EEtGl~~~~~~~l~~~~~~~--------  195 (275)
                      .+|+++|++ +++|||+++.+.   ..+.|.+|||++++||++.+||+||++||||+.+....++.......        
T Consensus         2 ~~a~~iv~~-~~~vLl~~r~~~---~~~~~~lPGG~ve~gEt~~~aa~RE~~EEtGl~v~~~~~~~~~~~~~~~~~~~~~   77 (128)
T cd04687           2 NSAKAVIIK-NDKILLIKHHDD---GGVWYILPGGGQEPGETLEDAAHRECKEEIGIDVEIGPLLFVREYIGHNPTSELP   77 (128)
T ss_pred             cEEEEEEEE-CCEEEEEEEEcC---CCCeEECCCcccCCCCCHHHHHHHHHHHHHCCccccCcEEEEEEEeccCccccCC
Confidence            467788887 579999998743   34789999999999999999999999999999987766655433221        


Q ss_pred             cccceEEEEEEEEEecCCc-cc-cCCccccceEEEEeHhhHhcCCCcc
Q 039665          196 SFFRKSDLFFVCMLRPRNF-HI-QKQDSEIAAAQWMQAEDYAAQPYVL  241 (275)
Q Consensus       196 ~~~~~~~~~f~~~~~~~~~-~~-~~~~~E~~~~~Wv~~eel~~~~~~~  241 (275)
                      ...+...++|+|....... .. ...+.+..+++|++++++.+++..+
T Consensus        78 ~~~~~i~~~f~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~l~~~~~~p  125 (128)
T cd04687          78 GHFHQVELMFECKIKSGTPAKTPSKPDPNQIGVEWLKLKELGDIPLYP  125 (128)
T ss_pred             CceeEEEEEEEEEECCCCcccccCCCCCCEEeeEEEcHHHhCcccccC
Confidence            1233455677776643221 11 1123455789999999999887654

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate

>cd04671 Nudix_Hydrolase_13 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.81  E-value=7.3e-19  Score=137.96  Aligned_cols=105  Identities=34%  Similarity=0.538  Sum_probs=80.5

Q ss_pred             EEEEEEeCCceEEEEEEecCCCCCCCceeCcceeccCCCCHHHHHHHHHHHHhCCCcceeEEEEEEeeeccccceEEEEE
Q 039665          126 VGAFVMNNKRELLVVQENNGALKGTGVWKLPTGTIEEGEDICAAAVREVKEETGIDTEFVEVLAFRQSHRSFFRKSDLFF  205 (275)
Q Consensus       126 v~~vv~~~~~~vLLv~r~~~~~~~~~~w~lPgG~ve~gEs~~~aA~REl~EEtGl~~~~~~~l~~~~~~~~~~~~~~~~f  205 (275)
                      |++++++.+++|||++|.+.+  .++.|.+|||+++.||++.+||+||++||||+++....+++.....   .....++|
T Consensus         3 ~~~vv~~~~~~vLl~~r~~~~--~~~~w~lPgG~ve~gEt~~~aa~REl~EEtG~~~~~~~~~~~~~~~---~~~~~~~f   77 (123)
T cd04671           3 VAAVILNNQGEVLLIQEAKRS--CRGKWYLPAGRMEPGETIEEAVKREVKEETGLDCEPTTLLSVEEQG---GSWFRFVF   77 (123)
T ss_pred             EEEEEEcCCCEEEEEEecCCC--CCCeEECceeecCCCCCHHHHHHHHHHHHHCCeeecceEEEEEccC---CeEEEEEE
Confidence            678888888999999998654  4789999999999999999999999999999999888877654321   23445667


Q ss_pred             EEEEecCCccc-cCCccccceEEEEeHhhHh
Q 039665          206 VCMLRPRNFHI-QKQDSEIAAAQWMQAEDYA  235 (275)
Q Consensus       206 ~~~~~~~~~~~-~~~~~E~~~~~Wv~~eel~  235 (275)
                      .|......... ..++.|+.+++|++++++.
T Consensus        78 ~a~~~~g~~~~~~~~~~e~~~~~W~~~~el~  108 (123)
T cd04671          78 TGNITGGDLKTEKEADSESLQARWYSNKDLP  108 (123)
T ss_pred             EEEEeCCeEccCCCCCcceEEEEEECHHHCC
Confidence            77554322111 1234577899999999993

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate

>cd04699 Nudix_Hydrolase_39 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.81  E-value=3.5e-19  Score=139.87  Aligned_cols=115  Identities=27%  Similarity=0.410  Sum_probs=83.2

Q ss_pred             eEEEEEEEeCCceEEEEEEecCCCCCCCceeCcceeccCCCCHHHHHHHHHHHHhCCCcceeEEEEEEeeeccc--cceE
Q 039665          124 VGVGAFVMNNKRELLVVQENNGALKGTGVWKLPTGTIEEGEDICAAAVREVKEETGIDTEFVEVLAFRQSHRSF--FRKS  201 (275)
Q Consensus       124 v~v~~vv~~~~~~vLLv~r~~~~~~~~~~w~lPgG~ve~gEs~~~aA~REl~EEtGl~~~~~~~l~~~~~~~~~--~~~~  201 (275)
                      ++|+++|+++++++||+||.+.+...++.|+||||++++||++.+||+||++||||+.+.....++....+...  ....
T Consensus         2 ~~v~~vv~~~~~~iLl~kr~~~~~~~~g~w~~PgG~ve~gEs~~~aa~RE~~EE~Gl~~~~~~~~~~~~~~~~~~~~~~~   81 (129)
T cd04699           2 VAVAALIVKDVGRILILKRSKDERTAPGKWELPGGKVEEGETFEEALKREVYEETGLTVTPFLRYPSTVTHEDSGVYNVI   81 (129)
T ss_pred             ceEEEEEECCCCcEEEEEecCCCCCCCCcCcCCccCccCCCCHHHHHHHHHHHhhCcEEEeeeeeeEEEEEcCCCEEEEE
Confidence            35777888877899999998766446899999999999999999999999999999998777665333333222  2233


Q ss_pred             EEEEEEEEecCCccccCCccccceEEEEeHhhHhcCCCcc
Q 039665          202 DLFFVCMLRPRNFHIQKQDSEIAAAQWMQAEDYAAQPYVL  241 (275)
Q Consensus       202 ~~~f~~~~~~~~~~~~~~~~E~~~~~Wv~~eel~~~~~~~  241 (275)
                      .++|.|...  .. ....++|..+++|++++++..+..+.
T Consensus        82 ~~~~~~~~~--~~-~~~~~~e~~~~~w~~~~el~~~~~~~  118 (129)
T cd04699          82 YLVFVCEAL--SG-AVKLSDEHEEYAWVTLEELAILKADI  118 (129)
T ss_pred             EEEEEeeec--CC-cccCChhheEEEEecHHHhhhhhccc
Confidence            344444322  21 22345688899999999987665553

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate

>PRK10546 pyrimidine (deoxy)nucleoside triphosphate pyrophosphohydrolase; Provisional

Probab=99.81  E-value=1.8e-18  Score=137.36  Aligned_cols=123  Identities=23%  Similarity=0.245  Sum_probs=87.8

Q ss_pred             EEEEEEeCCceEEEEEEecCCCCCCCceeCcceeccCCCCHHHHHHHHHHHHhCCCcceeEEEEEEeeeccccceEEEEE
Q 039665          126 VGAFVMNNKRELLVVQENNGALKGTGVWKLPTGTIEEGEDICAAAVREVKEETGIDTEFVEVLAFRQSHRSFFRKSDLFF  205 (275)
Q Consensus       126 v~~vv~~~~~~vLLv~r~~~~~~~~~~w~lPgG~ve~gEs~~~aA~REl~EEtGl~~~~~~~l~~~~~~~~~~~~~~~~f  205 (275)
                      +.+++++.+++|||+||.+.+. ++|.|+||||++++||++.+||+||++||||+.+....+++...+.........++|
T Consensus         6 ~~~~ii~~~~~vLL~~R~~~~~-~~g~w~~PgG~ve~gE~~~~a~~RE~~EE~Gl~~~~~~~~~~~~~~~~~~~~~~~~~   84 (135)
T PRK10546          6 VVAAIIERDGKILLAQRPAHSD-QAGLWEFAGGKVEPGESQPQALIRELREELGIEATVGEYVASHQREVSGRRIHLHAW   84 (135)
T ss_pred             EEEEEEecCCEEEEEEccCCCC-CCCcEECCcccCCCCCCHHHHHHHHHHHHHCCccccceeEEEEEEecCCcEEEEEEE
Confidence            3344456678999999976543 679999999999999999999999999999999877776765555444444344455


Q ss_pred             EEEEecCCccccCCccccceEEEEeHhhHhcCCCcccchHHHHHHHHHHhh
Q 039665          206 VCMLRPRNFHIQKQDSEIAAAQWMQAEDYAAQPYVLKHQMFNYICQICLTK  256 (275)
Q Consensus       206 ~~~~~~~~~~~~~~~~E~~~~~Wv~~eel~~~~~~~~~~~~~~~~~~~~~~  256 (275)
                      .+...  .+.+  ...|..+++|++++++..++++..   .+.+++.+++.
T Consensus        85 ~~~~~--~~~~--~~~e~~~~~W~~~~el~~~~~~~~---~~~~l~~~~~~  128 (135)
T PRK10546         85 HVPDF--HGEL--QAHEHQALVWCTPEEALRYPLAPA---DIPLLEAFMAL  128 (135)
T ss_pred             EEEEe--cCcc--cccccceeEEcCHHHcccCCCCcC---cHHHHHHHHHh
Confidence            55332  1222  234677899999999999887655   33445555444

>cd03429 NADH_pyrophosphatase NADH pyrophosphatase, a member of the Nudix hydrolase superfamily, catalyzes the cleavage of NADH into reduced nicotinamide mononucleotide (NMNH) and AMP

Probab=99.80  E-value=7.6e-19  Score=139.31  Aligned_cols=106  Identities=25%  Similarity=0.327  Sum_probs=82.8

Q ss_pred             EEEEEEEeCCceEEEEEEecCCCCCCCceeCcceeccCCCCHHHHHHHHHHHHhCCCcceeEEEEEEeeeccccceEEEE
Q 039665          125 GVGAFVMNNKRELLVVQENNGALKGTGVWKLPTGTIEEGEDICAAAVREVKEETGIDTEFVEVLAFRQSHRSFFRKSDLF  204 (275)
Q Consensus       125 ~v~~vv~~~~~~vLLv~r~~~~~~~~~~w~lPgG~ve~gEs~~~aA~REl~EEtGl~~~~~~~l~~~~~~~~~~~~~~~~  204 (275)
                      +|.+++.++++++||++|++.   ..+.|.+|||+++.||++.+||+||++||||+.+..+..++......  .....++
T Consensus         2 ~v~i~l~~~~~~vLL~~r~~~---~~~~w~lPgG~ie~gEt~~~aA~REl~EEtGl~~~~~~~l~~~~~~~--~~~~~~~   76 (131)
T cd03429           2 AVIVLVIDGGDRILLARQPRF---PPGMYSLLAGFVEPGESLEEAVRREVKEEVGIRVKNIRYVGSQPWPF--PSSLMLG   76 (131)
T ss_pred             eEEEEEEeCCCEEEEEEecCC---CCCcCcCCcccccCCCCHHHHHhhhhhhccCceeeeeEEEeecCCCC--CceEEEE
Confidence            355667777789999999753   26899999999999999999999999999999998888776543222  2344566


Q ss_pred             EEEEEecCCccccCCccccceEEEEeHhhHhcC
Q 039665          205 FVCMLRPRNFHIQKQDSEIAAAQWMQAEDYAAQ  237 (275)
Q Consensus       205 f~~~~~~~~~~~~~~~~E~~~~~Wv~~eel~~~  237 (275)
                      |+|....  .....+++|+.++.|++++++.++
T Consensus        77 f~~~~~~--~~~~~~~~E~~~~~w~~~~el~~~  107 (131)
T cd03429          77 FTAEADS--GEIVVDDDELEDARWFSRDEVRAA  107 (131)
T ss_pred             EEEEEcC--CcccCCchhhhccEeecHHHHhhc
Confidence            7776543  445556789999999999999874

Like other members of the Nudix family, it requires a divalent cation, such as Mg2+ or Mn2+, for activity. Members of this family are also recognized by the Nudix motif, a highly conserved 23-residue block (GX5EX7REUXEEXGU, where U = I, L or V), that functions as a metal binding and catalytic site. A block of 8 conserved amino acids downstream of the nudix motif is thought to give NADH pyrophosphatase its specificity for NADH. NADH pyrophosphatase forms a dimer.

>cd04676 Nudix_Hydrolase_17 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.80  E-value=8.6e-19  Score=137.29  Aligned_cols=113  Identities=27%  Similarity=0.469  Sum_probs=83.3

Q ss_pred             eeEEEEEEEeCCceEEEEEEecCCCCCCCceeCcceeccCCCCHHHHHHHHHHHHhCCCcceeEEEEEEeee---c--cc
Q 039665          123 RVGVGAFVMNNKRELLVVQENNGALKGTGVWKLPTGTIEEGEDICAAAVREVKEETGIDTEFVEVLAFRQSH---R--SF  197 (275)
Q Consensus       123 ~v~v~~vv~~~~~~vLLv~r~~~~~~~~~~w~lPgG~ve~gEs~~~aA~REl~EEtGl~~~~~~~l~~~~~~---~--~~  197 (275)
                      +.+|+++++|+++++||+||..     .+.|.||||+++.||++.+||+||++||||+.+....+++.....   .  ..
T Consensus         2 ~~~v~~ii~~~~~~vLl~~r~~-----~~~w~lPgG~v~~~E~~~~aa~REl~EE~Gl~~~~~~~~~~~~~~~~~~~~~~   76 (129)
T cd04676           2 LPGVTAVVRDDEGRVLLIRRSD-----NGLWALPGGAVEPGESPADTAVREVREETGLDVEVTGLVGIYTGPVHVVTYPN   76 (129)
T ss_pred             cceEEEEEECCCCeEEEEEecC-----CCcEECCeeccCCCCCHHHHHHHHHHHHhCceeEeeEEEEEeecccceeecCC
Confidence            3468888889889999999873     388999999999999999999999999999998777765432211   1  11


Q ss_pred             ---cceEEEEEEEEEecCCccccCCccccceEEEEeHhhHhcCCCccc
Q 039665          198 ---FRKSDLFFVCMLRPRNFHIQKQDSEIAAAQWMQAEDYAAQPYVLK  242 (275)
Q Consensus       198 ---~~~~~~~f~~~~~~~~~~~~~~~~E~~~~~Wv~~eel~~~~~~~~  242 (275)
                         .....++|++...  ......+..|..+++|++++++..+.++..
T Consensus        77 ~~~~~~~~~~~~~~~~--~~~~~~~~~e~~~~~w~~~~el~~~~~~~~  122 (129)
T cd04676          77 GDVRQYLDITFRCRVV--GGELRVGDDESLDVAWFDPDGLPPLLMHPS  122 (129)
T ss_pred             CCcEEEEEEEEEEEee--CCeecCCCCceeEEEEEChhhCccccCCHh
Confidence               1233445555443  223323567888999999999999877654

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate

>cd04672 Nudix_Hydrolase_14 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.80  E-value=1.1e-18  Score=136.60  Aligned_cols=111  Identities=25%  Similarity=0.473  Sum_probs=84.3

Q ss_pred             eeEEEEEEEeCCceEEEEEEecCCCCCCCceeCcceeccCCCCHHHHHHHHHHHHhCCCcceeEEEEEEeeeccc-----
Q 039665          123 RVGVGAFVMNNKRELLVVQENNGALKGTGVWKLPTGTIEEGEDICAAAVREVKEETGIDTEFVEVLAFRQSHRSF-----  197 (275)
Q Consensus       123 ~v~v~~vv~~~~~~vLLv~r~~~~~~~~~~w~lPgG~ve~gEs~~~aA~REl~EEtGl~~~~~~~l~~~~~~~~~-----  197 (275)
                      +++|+++|+++ +++||+++++     .+.|.+|||++++||++.+||+||++||||+.+....+++........     
T Consensus         2 ~~~v~~~i~~~-~~vLL~~~~~-----~~~w~~PGG~ve~gEs~~~aa~REl~EEtG~~~~~~~~~~~~~~~~~~~~~~~   75 (123)
T cd04672           2 KVDVRAAIFKD-GKILLVREKS-----DGLWSLPGGWADVGLSPAENVVKEVKEETGLDVKVRKLAAVDDRNKHHPPPQP   75 (123)
T ss_pred             cceEEEEEEEC-CEEEEEEEcC-----CCcEeCCccccCCCCCHHHHHHHHHHHHhCCeeeEeEEEEEeccccccCCCCc
Confidence            56788898986 7999999974     578999999999999999999999999999998777777765432211     


Q ss_pred             cceEEEEEEEEEecCCccccCCccccceEEEEeHhhHhcCCCccc
Q 039665          198 FRKSDLFFVCMLRPRNFHIQKQDSEIAAAQWMQAEDYAAQPYVLK  242 (275)
Q Consensus       198 ~~~~~~~f~~~~~~~~~~~~~~~~E~~~~~Wv~~eel~~~~~~~~  242 (275)
                      ......+|+|....  ..+... +|..+++|++++++.++..+..
T Consensus        76 ~~~~~~~f~~~~~~--~~~~~~-~E~~~~~W~~~~el~~l~~~~~  117 (123)
T cd04672          76 YQVYKLFFLCEILG--GEFKPN-IETSEVGFFALDDLPPLSEKRN  117 (123)
T ss_pred             eEEEEEEEEEEecC--CcccCC-CceeeeEEECHHHCcccccCCc
Confidence            12334566665542  233333 7889999999999998876543

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate

>PRK15393 NUDIX hydrolase YfcD; Provisional

Probab=99.79  E-value=1.7e-18  Score=144.58  Aligned_cols=111  Identities=21%  Similarity=0.237  Sum_probs=83.7

Q ss_pred             EEEEEEEeCCceEEEEEEecCCCCCCCce-eCcceeccCCCCHHHHHHHHHHHHhCCCcceeEEEEEEeeeccccceEEE
Q 039665          125 GVGAFVMNNKRELLVVQENNGALKGTGVW-KLPTGTIEEGEDICAAAVREVKEETGIDTEFVEVLAFRQSHRSFFRKSDL  203 (275)
Q Consensus       125 ~v~~vv~~~~~~vLLv~r~~~~~~~~~~w-~lPgG~ve~gEs~~~aA~REl~EEtGl~~~~~~~l~~~~~~~~~~~~~~~  203 (275)
                      ++.++|+|++++|||++|...+...+|.| .+|||++++||++.+||+|||+||||+.+..+..++.+...........+
T Consensus        39 ~~~v~v~~~~g~iLL~~R~~~~~~~pg~~~~~pGG~ve~GEs~~eAA~REL~EEtGl~~~~~~~~~~~~~~~~~~~~~~~  118 (180)
T PRK15393         39 ATYIVVHDGMGKILVQRRTETKDFLPGMLDATAGGVVQAGEQLLESARREAEEELGIAGVPFAEHGQFYFEDENCRVWGA  118 (180)
T ss_pred             EEEEEEECCCCeEEEEEeCCCCCCCCCcccccCCCcCCCCCCHHHHHHHHHHHHHCCCCccceeceeEEecCCCceEEEE
Confidence            46778889889999998875554456777 57999999999999999999999999987766666655443333333344


Q ss_pred             EEEEEEecCCccccCCccccceEEEEeHhhHhcCC
Q 039665          204 FFVCMLRPRNFHIQKQDSEIAAAQWMQAEDYAAQP  238 (275)
Q Consensus       204 ~f~~~~~~~~~~~~~~~~E~~~~~Wv~~eel~~~~  238 (275)
                      +|.+..   ......+++|+.+++|++++++.++.
T Consensus       119 ~f~~~~---~~~~~~~~~E~~~~~W~~~~el~~~~  150 (180)
T PRK15393        119 LFSCVS---HGPFALQEEEVSEVCWMTPEEITARC  150 (180)
T ss_pred             EEEEEe---CCCCCCChHHeeEEEECCHHHHhhhh
Confidence            555543   23455577899999999999999873

>cd04693 Nudix_Hydrolase_34 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.79  E-value=7.4e-19  Score=138.33  Aligned_cols=112  Identities=24%  Similarity=0.287  Sum_probs=79.9

Q ss_pred             EEEEEEEeCCceEEEEEEecCCCCCCCceeCc-ceeccCCCCHHHHHHHHHHHHhCCCcceeE--EEEEEeeeccccceE
Q 039665          125 GVGAFVMNNKRELLVVQENNGALKGTGVWKLP-TGTIEEGEDICAAAVREVKEETGIDTEFVE--VLAFRQSHRSFFRKS  201 (275)
Q Consensus       125 ~v~~vv~~~~~~vLLv~r~~~~~~~~~~w~lP-gG~ve~gEs~~~aA~REl~EEtGl~~~~~~--~l~~~~~~~~~~~~~  201 (275)
                      .|.+++++++++|||+||...+...+|.|++| ||++++||++ +||+||++||||+.+....  .++.+...... ...
T Consensus         2 ~v~v~~~~~~g~vLl~~R~~~~~~~pg~w~~p~GG~ve~gE~~-~aa~REl~EEtGl~~~~~~~~~~~~~~~~~~~-~~~   79 (127)
T cd04693           2 VVHVCIFNSKGELLLQKRSPNKDGWPGMWDLSVGGHVQAGETS-TAAEREVKEELGLELDFSELRPLFRYFFEAEG-FDD   79 (127)
T ss_pred             eEEEEEEeCCCeEEEEEccCCCCCCCCcccccCCCcCCCCCCH-HHHHHHHHHHhCCCcChhhcEEEEEEEeecCC-eEE
Confidence            36788899889999999886554567999998 8999999999 9999999999999976433  33333222211 112


Q ss_pred             EEEEEEEEecCCccccCCccccceEEEEeHhhHhcCCCc
Q 039665          202 DLFFVCMLRPRNFHIQKQDSEIAAAQWMQAEDYAAQPYV  240 (275)
Q Consensus       202 ~~~f~~~~~~~~~~~~~~~~E~~~~~Wv~~eel~~~~~~  240 (275)
                      .++|.+  .........+++|+.+++|++++++.++...
T Consensus        80 ~~~~~~--~~~~~~~~~~~~E~~~~~w~~~~el~~~~~~  116 (127)
T cd04693          80 YYLFYA--DVEIGKLILQKEEVDEVKFVSKDEIDGLIGH  116 (127)
T ss_pred             EEEEEe--cCcccccccCHHHhhhEEEeCHHHHHHHHhc
Confidence            222222  2223344556789999999999999887544

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate

>PRK10776 nucleoside triphosphate pyrophosphohydrolase; Provisional

Probab=99.79  E-value=4.4e-18  Score=133.45  Aligned_cols=112  Identities=20%  Similarity=0.293  Sum_probs=83.5

Q ss_pred             EEEEEEeCCceEEEEEEecCCCCCCCceeCcceeccCCCCHHHHHHHHHHHHhCCCcceeEEEEEEeeeccccceEEEEE
Q 039665          126 VGAFVMNNKRELLVVQENNGALKGTGVWKLPTGTIEEGEDICAAAVREVKEETGIDTEFVEVLAFRQSHRSFFRKSDLFF  205 (275)
Q Consensus       126 v~~vv~~~~~~vLLv~r~~~~~~~~~~w~lPgG~ve~gEs~~~aA~REl~EEtGl~~~~~~~l~~~~~~~~~~~~~~~~f  205 (275)
                      ++++|.+.++++||+||...+. .+|.|+||||++++||++.+||.||++||||+++.....++...+.+.......++|
T Consensus         7 ~~~ii~~~~~~vll~rR~~~~~-~~g~w~~PgG~~~~gE~~~~a~~Re~~EE~gl~~~~~~~~~~~~~~~~~~~~~~~~~   85 (129)
T PRK10776          7 AVGIIRNPNNEIFITRRAADAH-MAGKWEFPGGKIEAGETPEQALIRELQEEVGITVQHATLFEKLEYEFPDRHITLWFW   85 (129)
T ss_pred             EEEEEECCCCEEEEEEecCCCC-CCCeEECCceecCCCCCHHHHHHHHHHHHHCCceecceEEEEEEeeCCCcEEEEEEE
Confidence            4456677778999999976553 679999999999999999999999999999998776666665555454444444555


Q ss_pred             EEEEecCCccccCCccccceEEEEeHhhHhcCCCccc
Q 039665          206 VCMLRPRNFHIQKQDSEIAAAQWMQAEDYAAQPYVLK  242 (275)
Q Consensus       206 ~~~~~~~~~~~~~~~~E~~~~~Wv~~eel~~~~~~~~  242 (275)
                      .+...  ...  ....|..+++|++++++..++++..
T Consensus        86 ~~~~~--~~~--~~~~e~~~~~W~~~~~l~~~~~p~~  118 (129)
T PRK10776         86 LVESW--EGE--PWGKEGQPGRWVSQVALNADEFPPA  118 (129)
T ss_pred             EEEEE--CCc--cCCccCCccEEecHHHCccCCCCcc
Confidence            55432  111  1234677889999999999877755

>PRK00241 nudC NADH pyrophosphatase; Reviewed

Probab=99.79  E-value=2.3e-18  Score=151.05  Aligned_cols=125  Identities=21%  Similarity=0.213  Sum_probs=95.2

Q ss_pred             cceeEEEEEEEeCCceEEEEEEecCCCCCCCceeCcceeccCCCCHHHHHHHHHHHHhCCCcceeEEEEEEeeeccccce
Q 039665          121 SHRVGVGAFVMNNKRELLVVQENNGALKGTGVWKLPTGTIEEGEDICAAAVREVKEETGIDTEFVEVLAFRQSHRSFFRK  200 (275)
Q Consensus       121 ~~~v~v~~vv~~~~~~vLLv~r~~~~~~~~~~w~lPgG~ve~gEs~~~aA~REl~EEtGl~~~~~~~l~~~~~~~~~~~~  200 (275)
                      .+..+|.++|. ++++|||+++++.+   .+.|.+|||++|+||++++||+||++||||+++..+.+++.....+  .+.
T Consensus       130 ~~~paViv~V~-~~~~iLL~rr~~~~---~g~wslPgG~vE~GEs~eeAa~REv~EEtGl~v~~~~~~~s~~~~~--p~~  203 (256)
T PRK00241        130 RIAPCIIVAVR-RGDEILLARHPRHR---NGVYTVLAGFVEVGETLEQCVAREVMEESGIKVKNLRYVGSQPWPF--PHS  203 (256)
T ss_pred             CCCCEEEEEEE-eCCEEEEEEccCCC---CCcEeCcccCCCCCCCHHHHhhhhhhhccCceeeeeEEEEeEeecC--CCe
Confidence            44455655554 46899999987643   5899999999999999999999999999999998888887654322  234


Q ss_pred             EEEEEEEEEecCCccccCCccccceEEEEeHhhHhcCCCcccchHHHHHHHHHHh
Q 039665          201 SDLFFVCMLRPRNFHIQKQDSEIAAAQWMQAEDYAAQPYVLKHQMFNYICQICLT  255 (275)
Q Consensus       201 ~~~~f~~~~~~~~~~~~~~~~E~~~~~Wv~~eel~~~~~~~~~~~~~~~~~~~~~  255 (275)
                      ..+.|.+...  .+++..+++|+.+++|++++|+..++...  .+.+.+++..++
T Consensus       204 lm~~f~a~~~--~~~~~~~~~Ei~~a~W~~~del~~lp~~~--sia~~li~~~~~  254 (256)
T PRK00241        204 LMLGFHADYD--SGEIVFDPKEIADAQWFRYDELPLLPPSG--TIARRLIEDTVA  254 (256)
T ss_pred             EEEEEEEEec--CCcccCCcccEEEEEEECHHHCcccCCch--HHHHHHHHHHHH
Confidence            5667777654  34566677899999999999998875543  477777776654

>cd04690 Nudix_Hydrolase_31 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.79  E-value=2.1e-18  Score=133.74  Aligned_cols=106  Identities=27%  Similarity=0.422  Sum_probs=79.9

Q ss_pred             EEEEEEeCCceEEEEEEecCCCCCCCceeCcceeccCCCCHHHHHHHHHHHHhCCCcce--eEEEEEEeeeccc---cce
Q 039665          126 VGAFVMNNKRELLVVQENNGALKGTGVWKLPTGTIEEGEDICAAAVREVKEETGIDTEF--VEVLAFRQSHRSF---FRK  200 (275)
Q Consensus       126 v~~vv~~~~~~vLLv~r~~~~~~~~~~w~lPgG~ve~gEs~~~aA~REl~EEtGl~~~~--~~~l~~~~~~~~~---~~~  200 (275)
                      +++++++.++++||+|++     ..+.|.||||++++||++.+||+||++||||+.+..  +..++.+......   ...
T Consensus         3 ~~~~v~~~~~~vLl~~r~-----~~~~w~~PgG~ve~~Es~~~aa~REl~EEtGl~~~~~~~~~~~~~~~~~~~~~~~~~   77 (118)
T cd04690           3 AAALILVRDGRVLLVRKR-----GTDVFYLPGGKIEAGETPLQALIRELSEELGLDLDPDSLEYLGTFRAPAANEPGVDV   77 (118)
T ss_pred             EEEEEEecCCeEEEEEEC-----CCCcEECCCCccCCCCCHHHHHHHHHHHHHCCccChhheEEEEEEecccccCCCcEE
Confidence            567777878899999986     357899999999999999999999999999999877  7777665543221   223


Q ss_pred             EEEEEEEEEecCCccccCCccccceEEEEeHhhHhcCCCc
Q 039665          201 SDLFFVCMLRPRNFHIQKQDSEIAAAQWMQAEDYAAQPYV  240 (275)
Q Consensus       201 ~~~~f~~~~~~~~~~~~~~~~E~~~~~Wv~~eel~~~~~~  240 (275)
                      ..++|++....   .+. ...|+.+++|++++++....+.
T Consensus        78 ~~~~f~~~~~~---~~~-~~~e~~~~~W~~~~e~~~~~~~  113 (118)
T cd04690          78 RATVYVAELTG---EPV-PAAEIEEIRWVDYDDPADDRLA  113 (118)
T ss_pred             EEEEEEEcccC---CcC-CCchhhccEEecHHHccccccC
Confidence            45566664432   222 4568899999999998665543

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate

>cd04692 Nudix_Hydrolase_33 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.79  E-value=1.5e-18  Score=139.72  Aligned_cols=114  Identities=18%  Similarity=0.277  Sum_probs=85.3

Q ss_pred             EEEEEEEeCC---ceEEEEEEecCCCCCCCceeC-cceeccCCCCHHHHHHHHHHHHhCCCcc--eeEEEEEEeeecc--
Q 039665          125 GVGAFVMNNK---RELLVVQENNGALKGTGVWKL-PTGTIEEGEDICAAAVREVKEETGIDTE--FVEVLAFRQSHRS--  196 (275)
Q Consensus       125 ~v~~vv~~~~---~~vLLv~r~~~~~~~~~~w~l-PgG~ve~gEs~~~aA~REl~EEtGl~~~--~~~~l~~~~~~~~--  196 (275)
                      +|.++|+|.+   +++|+++|.......+|.|++ |||++++||++.+||+||++||||+.+.  .+..++.......  
T Consensus         4 ~v~~~v~~~~~~~~~vLl~~R~~~~~~~pg~W~~~~gG~ve~gEt~~~aa~REl~EEtGl~~~~~~l~~~~~~~~~~~~~   83 (144)
T cd04692           4 TFHCWIITKDEGKGYVLLQKRSANKKTYPGLWDISSAGHILAGETPLEDGIRELEEELGLDVSADDLIPLGTFKIEYDHI   83 (144)
T ss_pred             EEEEEEEEccCCCCEEEEEecCCCCCCCCCccccccCcccCCCCCHHHHHHHHHHHHhCCCCChHHeEEeeEEEEecccc
Confidence            3778899976   899999998655557899999 5999999999999999999999999864  4455555443322  


Q ss_pred             ---ccceEEEEEEEEEecCCccccCCccccceEEEEeHhhHhcCC
Q 039665          197 ---FFRKSDLFFVCMLRPRNFHIQKQDSEIAAAQWMQAEDYAAQP  238 (275)
Q Consensus       197 ---~~~~~~~~f~~~~~~~~~~~~~~~~E~~~~~Wv~~eel~~~~  238 (275)
                         ......++|++........+..+++|+.+++|++++++.++.
T Consensus        84 ~~~~~~~~~~~f~~~~~~~~~~~~~~~~E~~~~~W~~~~el~~~~  128 (144)
T cd04692          84 GKLIDREFHHVYLYELKVPLEEFTLQKEEVAGVVLIPLDEFAELL  128 (144)
T ss_pred             CCCccceEEEEEEEeccCChhhcCCChhHhheEEEECHHHHHHHH
Confidence               112345677776543223445567899999999999998764

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate

>cd04688 Nudix_Hydrolase_29 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.79  E-value=4.1e-18  Score=133.83  Aligned_cols=110  Identities=21%  Similarity=0.363  Sum_probs=81.8

Q ss_pred             EEEEEEeCCceEEEEEEecCCCCCCCceeCcceeccCCCCHHHHHHHHHHHHhCCCcceeEEEEEEeeecc----ccceE
Q 039665          126 VGAFVMNNKRELLVVQENNGALKGTGVWKLPTGTIEEGEDICAAAVREVKEETGIDTEFVEVLAFRQSHRS----FFRKS  201 (275)
Q Consensus       126 v~~vv~~~~~~vLLv~r~~~~~~~~~~w~lPgG~ve~gEs~~~aA~REl~EEtGl~~~~~~~l~~~~~~~~----~~~~~  201 (275)
                      |.++++++ ++|||+|+.+     .+.|.+|||++++||++.+||+||++||||+++.....++.......    ..+..
T Consensus         4 v~~vi~~~-~~vLl~~~~~-----~~~w~lPgG~ve~gEs~~~aa~RE~~EEtGl~~~~~~~~~~~~~~~~~~~~~~~~~   77 (126)
T cd04688           4 AAAIIIHN-GKLLVQKNPD-----ETFYRPPGGGIEFGESSEEALIREFKEELGLKIEITRLLGVVENIFTYNGKPGHEI   77 (126)
T ss_pred             EEEEEEEC-CEEEEEEeCC-----CCeEECCCccccCCCCHHHHHHHHHHHHhCCceecceeeEEEEEeeccCCcccEEE
Confidence            55666664 4999998763     57899999999999999999999999999999988888776543221    12345


Q ss_pred             EEEEEEEEecCCccc-----cCCccccceEEEEeHhhHhcCCCcc
Q 039665          202 DLFFVCMLRPRNFHI-----QKQDSEIAAAQWMQAEDYAAQPYVL  241 (275)
Q Consensus       202 ~~~f~~~~~~~~~~~-----~~~~~E~~~~~Wv~~eel~~~~~~~  241 (275)
                      .++|.|.........     ..++.|+.++.|++++++..++..+
T Consensus        78 ~~~f~~~~~~~~~~~~~~~~~~~~~e~~~~~W~~~~~l~~~~~~p  122 (126)
T cd04688          78 EFYYLVTLLDESLYQQDIEILEEEGEKIVFRWIPIDELKEIKLYP  122 (126)
T ss_pred             EEEEEEEeCCCcccccccceeccCCCEEEEEEeeHHHcccCccCC
Confidence            667777664332211     1245789999999999999876654

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate

>cd04689 Nudix_Hydrolase_30 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.79  E-value=3.2e-18  Score=134.25  Aligned_cols=108  Identities=19%  Similarity=0.226  Sum_probs=78.6

Q ss_pred             eEEEEEEEeCCceEEEEEEecCCCCCCCceeCcceeccCCCCHHHHHHHHHHHHhCCCcceeEEEEEEeeecc----ccc
Q 039665          124 VGVGAFVMNNKRELLVVQENNGALKGTGVWKLPTGTIEEGEDICAAAVREVKEETGIDTEFVEVLAFRQSHRS----FFR  199 (275)
Q Consensus       124 v~v~~vv~~~~~~vLLv~r~~~~~~~~~~w~lPgG~ve~gEs~~~aA~REl~EEtGl~~~~~~~l~~~~~~~~----~~~  199 (275)
                      +.|+++|++ ++++||+++.     ..+.|.+|||++++||++.+||+||++||||+++....+++.......    ...
T Consensus         2 ~~~~~vi~~-~~~vLlv~~~-----~~~~~~lPGG~ve~gEt~~~aa~REl~EEtGl~~~~~~~l~~~~~~~~~~~~~~~   75 (125)
T cd04689           2 LRARAIVRA-GNKVLLARVI-----GQPHYFLPGGHVEPGETAENALRRELQEELGVAVSDGRFLGAIENQWHEKGVRTH   75 (125)
T ss_pred             eEEEEEEEe-CCEEEEEEec-----CCCCEECCCCcCCCCCCHHHHHHHHHHHHhCceeeccEEEEEEeeeeccCCceEE
Confidence            357777776 6799999986     346899999999999999999999999999999988888876543221    122


Q ss_pred             eEEEEEEEEEecCCcc-ccCCccccceEEEEeHhhHhcC
Q 039665          200 KSDLFFVCMLRPRNFH-IQKQDSEIAAAQWMQAEDYAAQ  237 (275)
Q Consensus       200 ~~~~~f~~~~~~~~~~-~~~~~~E~~~~~Wv~~eel~~~  237 (275)
                      ...++|++........ ....++|+.+++|++++++...
T Consensus        76 ~~~~~f~~~~~~~~~~~~~~~~~e~~~~~W~~~~el~~~  114 (125)
T cd04689          76 EINHIFAVESSWLASDGPPQADEDHLSFSWVPVSDLSLY  114 (125)
T ss_pred             EEEEEEEEEcccccccCCccCccceEEEEEccHHHcccC
Confidence            3445666655422211 1234567899999999997643

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U=I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate sp

>cd04664 Nudix_Hydrolase_7 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.78  E-value=2.3e-18  Score=135.80  Aligned_cols=112  Identities=29%  Similarity=0.317  Sum_probs=84.9

Q ss_pred             EEEEEEEeC--CceEEEEEEecCCCCCCCceeCcceeccCCCCHHHHHHHHHHHHhCCCcceeEEEEEEee----eccc-
Q 039665          125 GVGAFVMNN--KRELLVVQENNGALKGTGVWKLPTGTIEEGEDICAAAVREVKEETGIDTEFVEVLAFRQS----HRSF-  197 (275)
Q Consensus       125 ~v~~vv~~~--~~~vLLv~r~~~~~~~~~~w~lPgG~ve~gEs~~~aA~REl~EEtGl~~~~~~~l~~~~~----~~~~-  197 (275)
                      .|.+++++.  +++|||+||.+.   .++.|.+|||+++.||++.+||+||++||||+.+.....+.....    .... 
T Consensus         3 ~~~v~~~~~~~~~~vLL~~r~~~---~~~~w~~PgG~ve~~Es~~~aa~RE~~EE~Gl~~~~~~~~~~~~~~~~~~~~~~   79 (129)
T cd04664           3 SVLVVPYRLTGEGRVLLLRRSDK---YAGFWQSVTGGIEDGESPAEAARREVAEETGLDPERLTLLDRGASIAFVEFTDN   79 (129)
T ss_pred             EEEEEEEEeCCCCEEEEEEeCCC---CCCcccccCcccCCCCCHHHHHHHHHHHHHCCChhheEEEeecccccccccCCC
Confidence            367888887  899999999864   578999999999999999999999999999999877776664432    1111 


Q ss_pred             -cceEEEEEEEEEecCCccccCCccccceEEEEeHhhHhcCCCcc
Q 039665          198 -FRKSDLFFVCMLRPRNFHIQKQDSEIAAAQWMQAEDYAAQPYVL  241 (275)
Q Consensus       198 -~~~~~~~f~~~~~~~~~~~~~~~~E~~~~~Wv~~eel~~~~~~~  241 (275)
                       .....++|+|.+....  ....++|+.+++|++++++.++....
T Consensus        80 ~~~~~~~~f~~~~~~~~--~~~~~~E~~~~~W~~~~e~~~~~~~~  122 (129)
T cd04664          80 GRVWTEHPFAFHLPSDA--VVTLDWEHDAFEWVPPEEAAALLLWE  122 (129)
T ss_pred             ceEEEEeEEEEEcCCCC--cccCCccccccEecCHHHHHHHHcCh
Confidence             2244567777654322  22355788999999999998876544

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate s

>TIGR00052 nudix-type nucleoside diphosphatase, YffH/AdpP family

Probab=99.78  E-value=1.7e-18  Score=145.02  Aligned_cols=119  Identities=16%  Similarity=0.068  Sum_probs=94.5

Q ss_pred             eEEEEEEEeC-CceEEEEEEecCCCC----CCCceeCcceeccCCCCHHHHHHHHHHHHhCCCcceeEEEEEEeeecccc
Q 039665          124 VGVGAFVMNN-KRELLVVQENNGALK----GTGVWKLPTGTIEEGEDICAAAVREVKEETGIDTEFVEVLAFRQSHRSFF  198 (275)
Q Consensus       124 v~v~~vv~~~-~~~vLLv~r~~~~~~----~~~~w~lPgG~ve~gEs~~~aA~REl~EEtGl~~~~~~~l~~~~~~~~~~  198 (275)
                      .+|++++++. +++|||++|+|.+..    .+..|+||||++|+||++++||+||++||||+.+..+..++.+...++..
T Consensus        45 ~~v~vl~~~~~~~~vlLvrq~R~~~~~~~~~~~~lelPaG~ve~gE~~~~aA~REl~EEtG~~~~~~~~~~~~~~~~g~~  124 (185)
T TIGR00052        45 NAAAVLLYDPKKDTVVLIEQFRIAAYVNGEEPWLLELSAGMVEKGESPEDVARREAIEEAGYQVKNLRKLLSFYSSPGGV  124 (185)
T ss_pred             CeEEEEEEECCCCEEEEEECceeeeeecCCcceEEEECcEecCCCCCHHHHHHHHccccccceecceEEEEEEEcCCCCC
Confidence            3577888874 579999999976531    46799999999999999999999999999999999999888877777777


Q ss_pred             ceEEEEEEEEEecCC--ccccCCccccceEEEEeHhhHhcCCCccc
Q 039665          199 RKSDLFFVCMLRPRN--FHIQKQDSEIAAAQWMQAEDYAAQPYVLK  242 (275)
Q Consensus       199 ~~~~~~f~~~~~~~~--~~~~~~~~E~~~~~Wv~~eel~~~~~~~~  242 (275)
                      +...++|++......  .....+++|..++.|++++++.++.....
T Consensus       125 ~~~~~~f~a~~~~~~~~~~~~~~~~E~ie~~~~~~~e~~~~~~~G~  170 (185)
T TIGR00052       125 TELIHLFIAEVDDNQAAGIGGGADEEEIEVLHLVFSQALQWIKEGK  170 (185)
T ss_pred             cEEEEEEEEEEchhhcCCCCCCCCccceEEEEeCHHHHHHHHHcCC
Confidence            788889999764321  11122456667899999999998865544

>cd04511 Nudix_Hydrolase_4 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.78  E-value=5.2e-18  Score=134.20  Aligned_cols=107  Identities=21%  Similarity=0.341  Sum_probs=82.7

Q ss_pred             cceeEEEEEEEeCCceEEEEEEecCCCCCCCceeCcceeccCCCCHHHHHHHHHHHHhCCCcceeEEEEEEeeeccccce
Q 039665          121 SHRVGVGAFVMNNKRELLVVQENNGALKGTGVWKLPTGTIEEGEDICAAAVREVKEETGIDTEFVEVLAFRQSHRSFFRK  200 (275)
Q Consensus       121 ~~~v~v~~vv~~~~~~vLLv~r~~~~~~~~~~w~lPgG~ve~gEs~~~aA~REl~EEtGl~~~~~~~l~~~~~~~~~~~~  200 (275)
                      ++++.|+++++++ ++|||++|.+.+  ..+.|++|||++++||++.+||+||++||||+++....+++.....  ....
T Consensus        11 ~~~~~v~~ii~~~-~~vLL~kr~~~~--~~g~w~lPgG~ve~gE~~~~a~~REl~EEtGl~~~~~~~~~~~~~~--~~~~   85 (130)
T cd04511          11 NPKIIVGCVPEWE-GKVLLCRRAIEP--RHGFWTLPAGFMENGETTEQGALRETWEEAGARVEIDGLYAVYSVP--HISQ   85 (130)
T ss_pred             CCcEEEEEEEecC-CEEEEEEecCCC--CCCeEECCcccccCCCCHHHHHHHHHHHHhCCEEEeeeEEEEEecC--CceE
Confidence            4566777777775 799999997644  5689999999999999999999999999999998776666655432  2345


Q ss_pred             EEEEEEEEEecCCccccCCccccceEEEEeHhhHh
Q 039665          201 SDLFFVCMLRPRNFHIQKQDSEIAAAQWMQAEDYA  235 (275)
Q Consensus       201 ~~~~f~~~~~~~~~~~~~~~~E~~~~~Wv~~eel~  235 (275)
                      ..++|+|....  ..+. ...|..+++|++++++.
T Consensus        86 ~~~~f~~~~~~--~~~~-~~~e~~~~~~~~~~~l~  117 (130)
T cd04511          86 VYMFYRARLLD--LDFA-PGPESLEVRLFTEEEIP  117 (130)
T ss_pred             EEEEEEEEEcC--Cccc-CCcchhceEEECHHHCC
Confidence            66778886643  2332 34678899999999996

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, U=I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate specifici

>cd03428 Ap4A_hydrolase_human_like Diadenosine tetraphosphate (Ap4A) hydrolase is a member of the Nudix hydrolase superfamily

Probab=99.78  E-value=2.1e-18  Score=135.92  Aligned_cols=118  Identities=26%  Similarity=0.397  Sum_probs=84.4

Q ss_pred             EEEEEEEeCCc---eEEEEEEecCCCCCCCceeCcceeccCCCCHHHHHHHHHHHHhCCCcceeEEEEEEe--eec--cc
Q 039665          125 GVGAFVMNNKR---ELLVVQENNGALKGTGVWKLPTGTIEEGEDICAAAVREVKEETGIDTEFVEVLAFRQ--SHR--SF  197 (275)
Q Consensus       125 ~v~~vv~~~~~---~vLLv~r~~~~~~~~~~w~lPgG~ve~gEs~~~aA~REl~EEtGl~~~~~~~l~~~~--~~~--~~  197 (275)
                      ++++++++.++   ++||+|++.      +.|.+|||++++||++.+||+||++||||+.+.....++.+.  ...  ..
T Consensus         4 ~~g~vi~~~~~~~~~vLl~~~~~------~~w~~PgG~ve~gEs~~~aa~REl~EEtGl~~~~~~~~~~~~~~~~~~~~~   77 (130)
T cd03428           4 SAGAIIYRRLNNEIEYLLLQASY------GHWDFPKGHVEPGEDDLEAALRETEEETGITAEQLFIVLGFKETLNYQVRG   77 (130)
T ss_pred             EEEEEEEEecCCCceEEEEEccC------CcCcCCcCCCCCCCCHHHHHHHHHHHHHCCChhhhhhhccceeEEEccccC
Confidence            57778877443   799998873      789999999999999999999999999999988777652221  111  12


Q ss_pred             cceEEEEEEEEEecCCccccCCccccceEEEEeHhhHhcCCCcccchHHHHHHHHH
Q 039665          198 FRKSDLFFVCMLRPRNFHIQKQDSEIAAAQWMQAEDYAAQPYVLKHQMFNYICQIC  253 (275)
Q Consensus       198 ~~~~~~~f~~~~~~~~~~~~~~~~E~~~~~Wv~~eel~~~~~~~~~~~~~~~~~~~  253 (275)
                      .....++|++.... ...+..+ +|+.++.|++++++.++.....   ++.+++.+
T Consensus        78 ~~~~~~~f~~~~~~-~~~~~~~-~E~~~~~W~~~~e~~~~~~~~~---~~~~~~~~  128 (130)
T cd03428          78 KLKTVTYFLAELRP-DVEVKLS-EEHQDYRWLPYEEALKLLTYED---LKAVLDKA  128 (130)
T ss_pred             cceEEEEEEEEeCC-CCccccc-cceeeEEeecHHHHHHHcCchh---HHHHHHHh
Confidence            34556777776652 2233334 7899999999999998765433   44444443

Ap4A hydrolases are well represented in a variety of prokaryotic and eukaryotic organisms. Phylogenetic analysis reveals two distinct subgroups where plant enzymes fall into one subfamily and fungi/animals/archaea enzymes, represented by this subfamily, fall into another. Bacterial enzymes are found in both subfamilies. Ap4A is a potential by-product of aminoacyl tRNA synthesis, and accumulation of Ap4A has been implicated in a range of biological events, such as DNA replication, cellular differentiation, heat shock, metabolic stress, and apoptosis. Ap4A hydrolase cleaves Ap4A asymmetrically into ATP and AMP. It is important in the invasive properties of bacteria and thus presents a potential target for inhibition of such invasive bacteria. Besides the signature nudix motif (G[X5]E[X7]REUXEEXGU, where U is Ile, Leu, or Val) that functions as a metal binding and

>COG1051 ADP-ribose pyrophosphatase [Nucleotide transport and metabolism]

Probab=99.78  E-value=3.5e-18  Score=137.77  Aligned_cols=116  Identities=29%  Similarity=0.517  Sum_probs=84.9

Q ss_pred             cceeEEEEEEEeCCceEEEEEEecCCCCCCCceeCcceeccCCCCHHHHHHHHHHHHhCCCcceeEEEEEEeeeccc-c-
Q 039665          121 SHRVGVGAFVMNNKRELLVVQENNGALKGTGVWKLPTGTIEEGEDICAAAVREVKEETGIDTEFVEVLAFRQSHRSF-F-  198 (275)
Q Consensus       121 ~~~v~v~~vv~~~~~~vLLv~r~~~~~~~~~~w~lPgG~ve~gEs~~~aA~REl~EEtGl~~~~~~~l~~~~~~~~~-~-  198 (275)
                      .+.++|++++...+ +|||+||...+  +.|.|.||||++|.||++.+||.||++||||+++..+++++++...... . 
T Consensus         8 ~p~~~v~~~i~~~~-~iLLvrR~~~p--~~g~WalPGG~ve~GEt~eeaa~REl~EETgL~~~~~~~~~v~~~~~rd~r~   84 (145)
T COG1051           8 TPLVAVGALIVRNG-RILLVRRANEP--GAGYWALPGGFVEIGETLEEAARRELKEETGLRVRVLELLAVFDDPGRDPRG   84 (145)
T ss_pred             CcceeeeEEEEeCC-EEEEEEecCCC--CCCcEeCCCccCCCCCCHHHHHHHHHHHHhCCcccceeEEEEecCCCCCCce
Confidence            45677888877754 99999999765  5689999999999999999999999999999999999999887765443 1 


Q ss_pred             ceEEEEEEEEEecCCccccCCccccceEEEEeHhhHhcCCCc
Q 039665          199 RKSDLFFVCMLRPRNFHIQKQDSEIAAAQWMQAEDYAAQPYV  240 (275)
Q Consensus       199 ~~~~~~f~~~~~~~~~~~~~~~~E~~~~~Wv~~eel~~~~~~  240 (275)
                      ....++|++. .........+..+...+.|++++++..+..+
T Consensus        85 ~~v~~~~~~~-~~~g~~~~~~~~d~~~~~~~~~~~l~~~~~~  125 (145)
T COG1051          85 HHVSFLFFAA-EPEGELLAGDGDDAAEVGWFPLDELPELPLP  125 (145)
T ss_pred             eEEEEEEEEE-ecCCCcccCChhhHhhcceecHhHccccccc
Confidence            1222222221 1112122223347788999999999986443

>cd04686 Nudix_Hydrolase_27 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.78  E-value=4.4e-18  Score=134.88  Aligned_cols=107  Identities=23%  Similarity=0.458  Sum_probs=77.5

Q ss_pred             EEEEEEEeCCceEEEEEEecCCCCCCCceeCcceeccCCCCHHHHHHHHHHHHhCCCc-ceeEEEEEEeeec-------c
Q 039665          125 GVGAFVMNNKRELLVVQENNGALKGTGVWKLPTGTIEEGEDICAAAVREVKEETGIDT-EFVEVLAFRQSHR-------S  196 (275)
Q Consensus       125 ~v~~vv~~~~~~vLLv~r~~~~~~~~~~w~lPgG~ve~gEs~~~aA~REl~EEtGl~~-~~~~~l~~~~~~~-------~  196 (275)
                      +|+++|++ +++|||+++++     .+.|.||||++++||++.+||+||++||||+.+ .....++.+....       .
T Consensus         2 ~~~~ii~~-~~~vLLv~~~~-----~~~w~lPgG~ve~gEt~~~aa~REl~EEtGl~~~~~~~~l~~~~~~~~~~~~~~~   75 (131)
T cd04686           2 AVRAIILQ-GDKILLLYTKR-----YGDYKFPGGGVEKGEDHIEGLIRELQEETGATNIRVIEKFGTYTERRPWRKPDAD   75 (131)
T ss_pred             cEEEEEEE-CCEEEEEEEcC-----CCcEECccccCCCCCCHHHHHHHHHHHHHCCcccccceEEEEEEeeccccCCCCc
Confidence            47788888 47999999874     357999999999999999999999999999987 4555665543211       1


Q ss_pred             ccceEEEEEEEEEecCCccccCCcccc---ceEEEEeHhhHhcC
Q 039665          197 FFRKSDLFFVCMLRPRNFHIQKQDSEI---AAAQWMQAEDYAAQ  237 (275)
Q Consensus       197 ~~~~~~~~f~~~~~~~~~~~~~~~~E~---~~~~Wv~~eel~~~  237 (275)
                      .++...++|+|.+..........+.|.   ..++|++++++.+-
T Consensus        76 ~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~W~~~~ea~~~  119 (131)
T cd04686          76 IFHMISYYYLCEVDAELGAQQLEDYEAELGMKPIWINIHEAIEH  119 (131)
T ss_pred             eeEEEEEEEEEEEcCCcCCcccchhhHhcCCCcEEecHHHHHHh
Confidence            123446788887764444444444343   46899999998764

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate

>cd04694 Nudix_Hydrolase_35 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.77  E-value=5e-18  Score=136.58  Aligned_cols=114  Identities=25%  Similarity=0.423  Sum_probs=82.2

Q ss_pred             eEEEEEEEeCCceEEEEEEecCCCCCCCceeCcceeccCCCCHHHHHHHHHHHHhCCCccee----EEEEEEeeecc---
Q 039665          124 VGVGAFVMNNKRELLVVQENNGALKGTGVWKLPTGTIEEGEDICAAAVREVKEETGIDTEFV----EVLAFRQSHRS---  196 (275)
Q Consensus       124 v~v~~vv~~~~~~vLLv~r~~~~~~~~~~w~lPgG~ve~gEs~~~aA~REl~EEtGl~~~~~----~~l~~~~~~~~---  196 (275)
                      ++|+++++|.+++|||+||...+...+|.|.+|||++++||++.+||+||++||||+.+...    .+++.....+.   
T Consensus         2 ~~v~viv~~~~~~vLl~rr~~~~~~~~g~w~~PgG~v~~~E~~~~aa~RE~~EE~gi~~~~~~~~~~~l~~~~~~~~~~~   81 (143)
T cd04694           2 VGVAVLLQSSDQKLLLTRRASSLRIFPNVWVPPGGHVELGENLLEAGLRELNEETGLTLDPIDKSWQVLGLWESVYPPLL   81 (143)
T ss_pred             cEEEEEEEcCCCEEEEEEECCCCCCCCCeEECcccccCCCCCHHHHHHHHHHHHHCCCccccccceeEEeeecccccccc
Confidence            35778889999999999998765457899999999999999999999999999999988753    55554432211   


Q ss_pred             ---c--cceEEEEEEEEEecC----CccccCCccccceEEEEeHhhHhcC
Q 039665          197 ---F--FRKSDLFFVCMLRPR----NFHIQKQDSEIAAAQWMQAEDYAAQ  237 (275)
Q Consensus       197 ---~--~~~~~~~f~~~~~~~----~~~~~~~~~E~~~~~Wv~~eel~~~  237 (275)
                         .  ......+|++.....    ...+.++++|+.+++|++++++.++
T Consensus        82 ~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~Ev~~~~Wv~~~~a~~~  131 (143)
T cd04694          82 SRGLPKRHHIVVYILVKSSETHQQLQARLQPDPNEVSAAAWLDKSLAKAV  131 (143)
T ss_pred             CCCcccceeEEEEEEEEeccccccccccccCChhhccceEeeCHHHHHHH
Confidence               1  122223333322211    1133456689999999999998875

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate

>TIGR00586 mutt mutator mutT protein

Probab=99.77  E-value=1.6e-17  Score=130.35  Aligned_cols=114  Identities=18%  Similarity=0.200  Sum_probs=86.7

Q ss_pred             EEEEEEEeCCceEEEEEEecCCCCCCCceeCcceeccCCCCHHHHHHHHHHHHhCCCcceeEEEEEEeeeccccceEEEE
Q 039665          125 GVGAFVMNNKRELLVVQENNGALKGTGVWKLPTGTIEEGEDICAAAVREVKEETGIDTEFVEVLAFRQSHRSFFRKSDLF  204 (275)
Q Consensus       125 ~v~~vv~~~~~~vLLv~r~~~~~~~~~~w~lPgG~ve~gEs~~~aA~REl~EEtGl~~~~~~~l~~~~~~~~~~~~~~~~  204 (275)
                      .+++++++.++++||++|...+. .+|.|+||||.+++||++.+||+||++||||+.+.....++...+.++......++
T Consensus         6 ~~~~ii~~~~~~vLl~~R~~~~~-~~g~w~~Pgg~ve~ge~~~~~~~RE~~EE~g~~~~~~~~~~~~~h~~~~~~~~~~~   84 (128)
T TIGR00586         6 IAVGIIRNENGEIIITRRADGHM-FAKLLEFPGGKEEGGETPEQAVVRELEEEIGIPQHFSEFEKLEYEFYPRHITLWFW   84 (128)
T ss_pred             EEEEEEECCCCEEEEEEEeCCCC-CCCeEECCCcccCCCCCHHHHHHHHHHHHHCCcceeeeEEEEEEEECCCcEEEEEE
Confidence            35566677778999999986654 67999999999999999999999999999999987776676666655554455556


Q ss_pred             EEEEEecCCccccCCccccceEEEEeHhhHhcCCCcccc
Q 039665          205 FVCMLRPRNFHIQKQDSEIAAAQWMQAEDYAAQPYVLKH  243 (275)
Q Consensus       205 f~~~~~~~~~~~~~~~~E~~~~~Wv~~eel~~~~~~~~~  243 (275)
                      |.|....  ...  ...+..++.|++++++.+++++...
T Consensus        85 ~~~~~~~--~~~--~~~~~~~~~W~~~~~l~~~~~p~~~  119 (128)
T TIGR00586        85 LLERWEG--GPP--GKEGQPEEWWVLVGLLADDFFPAAN  119 (128)
T ss_pred             EEEEEcC--CCc--CcccccccEEeCHHHCCccCCCCCC
Confidence            6554432  121  2345667899999999999887653

All proteins in this family for which functions are known are involved in repairing oxidative damage to dGTP (they are 8-oxo-dGTPases). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>cd03425 MutT_pyrophosphohydrolase The MutT pyrophosphohydrolase is a prototypical Nudix hydrolase that catalyzes the hydrolysis of nucleoside and deoxynucleoside triphosphates (NTPs and dNTPs) by substitution at a beta-phosphorus to yield a nucleotide monophosphate (NMP) and inorganic pyrophosphate (PPi)

Probab=99.77  E-value=1e-17  Score=130.00  Aligned_cols=113  Identities=27%  Similarity=0.404  Sum_probs=87.8

Q ss_pred             EEEEEEeCCceEEEEEEecCCCCCCCceeCcceeccCCCCHHHHHHHHHHHHhCCCcceeEEEEEEeeeccccceEEEEE
Q 039665          126 VGAFVMNNKRELLVVQENNGALKGTGVWKLPTGTIEEGEDICAAAVREVKEETGIDTEFVEVLAFRQSHRSFFRKSDLFF  205 (275)
Q Consensus       126 v~~vv~~~~~~vLLv~r~~~~~~~~~~w~lPgG~ve~gEs~~~aA~REl~EEtGl~~~~~~~l~~~~~~~~~~~~~~~~f  205 (275)
                      +.++++++++++||++|.+.+ ..+|.|.||||+++.+|++.++|.||++||||+.+.....++...+.........++|
T Consensus         4 ~~~~i~~~~~~~Ll~~r~~~~-~~~g~w~~p~G~~~~~e~~~~~a~Re~~EE~g~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (124)
T cd03425           4 VAAIIIDDDGRILIAQRPAGK-HLGGLWEFPGGKVEPGETPEQALVRELREELGIEVEVGELLATVEHDYPDKRVTLHVF   82 (124)
T ss_pred             EEEEEECCCCEEEEEEeCCCC-CCCCeEeCCCcccCCCCCHHHHHHHHHHHhhCcEEeccceEEEEEeeCCCCeEEEEEE
Confidence            445666777899999998666 4689999999999999999999999999999999887777776665555555555666


Q ss_pred             EEEEecCCccccCCccccceEEEEeHhhHhcCCCcccc
Q 039665          206 VCMLRPRNFHIQKQDSEIAAAQWMQAEDYAAQPYVLKH  243 (275)
Q Consensus       206 ~~~~~~~~~~~~~~~~E~~~~~Wv~~eel~~~~~~~~~  243 (275)
                      .+....  ...  ...|..++.|++++++..++++..+
T Consensus        83 ~~~~~~--~~~--~~~e~~~~~W~~~~el~~~~~~~~~  116 (124)
T cd03425          83 LVELWS--GEP--QLLEHQELRWVPPEELDDLDFPPAD  116 (124)
T ss_pred             EEeeeC--CCc--ccccCceEEEeeHHHcccCCCCccc
Confidence            664432  221  2457788999999999999887664

This enzyme requires two divalent cations for activity; one coordinates the phosphoryl groups of the NTP/dNTP substrate, and the other coordinates to the enzyme. It also contains the Nudix motif, a highly conserved 23-residue block (GX5EX7REUXEEXGU, where U = I, L or V), that functions as metal binding and catalytic site. MutT pyrophosphohydrolase is important in preventing errors in DNA replication by hydrolyzing mutagenic nucleotides such as 8-oxo-dGTP (a product of oxidative damage), which can mispair with template adenine during DNA replication, to guanine nucleotides.

>cd04695 Nudix_Hydrolase_36 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.77  E-value=4.9e-18  Score=134.49  Aligned_cols=108  Identities=20%  Similarity=0.242  Sum_probs=74.9

Q ss_pred             eCCceEEEEEEecCCCCCCCceeCcceeccCCCCHHHHHHHHHHHHhCCCcceeEEEE---EEeeeccccceEEEEEEEE
Q 039665          132 NNKRELLVVQENNGALKGTGVWKLPTGTIEEGEDICAAAVREVKEETGIDTEFVEVLA---FRQSHRSFFRKSDLFFVCM  208 (275)
Q Consensus       132 ~~~~~vLLv~r~~~~~~~~~~w~lPgG~ve~gEs~~~aA~REl~EEtGl~~~~~~~l~---~~~~~~~~~~~~~~~f~~~  208 (275)
                      +.+++|||++|...   .+|.|.+|||++++||++.+||+||++||||+++..+....   ..............+|++.
T Consensus        11 ~~~~~vLl~~r~~~---~~g~w~~PgG~ve~gEs~~~aa~RE~~EEtGl~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~   87 (131)
T cd04695          11 DKETKVLLLKRVKT---LGGFWCHVAGGVEAGETAWQAALRELKEETGISLPELYNADYLEQFYEANDNRILMAPVFVGF   87 (131)
T ss_pred             CCCCEEEEEEecCC---CCCcEECCcccccCCCCHHHHHHHHHHHHhCCCccccccccceeeEeecCCceEEEEEEEEEE
Confidence            46789999999854   46899999999999999999999999999999986543322   2222111111223345554


Q ss_pred             EecCCccccCCccccceEEEEeHhhHhcCCCcccch
Q 039665          209 LRPRNFHIQKQDSEIAAAQWMQAEDYAAQPYVLKHQ  244 (275)
Q Consensus       209 ~~~~~~~~~~~~~E~~~~~Wv~~eel~~~~~~~~~~  244 (275)
                      .... ... ..++|..+++|++++++.++......+
T Consensus        88 ~~~~-~~~-~~~~E~~~~~W~~~~e~~~~~~~~~~~  121 (131)
T cd04695          88 VPPH-QEV-VLNHEHTEYRWCSFAEALELAPFPGQR  121 (131)
T ss_pred             ecCC-Ccc-ccCchhcccEecCHHHHHHhcCChhHH
Confidence            4321 222 234789999999999999886654433

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate

>PRK03759 isopentenyl-diphosphate delta-isomerase; Provisional

Probab=99.77  E-value=4.9e-18  Score=142.38  Aligned_cols=116  Identities=19%  Similarity=0.303  Sum_probs=85.4

Q ss_pred             eEEEEEEEeCCceEEEEEEecCCCCCCCceeCc-ceeccCCCCHHHHHHHHHHHHhCCCcceeEE-EEEEee-e---ccc
Q 039665          124 VGVGAFVMNNKRELLVVQENNGALKGTGVWKLP-TGTIEEGEDICAAAVREVKEETGIDTEFVEV-LAFRQS-H---RSF  197 (275)
Q Consensus       124 v~v~~vv~~~~~~vLLv~r~~~~~~~~~~w~lP-gG~ve~gEs~~~aA~REl~EEtGl~~~~~~~-l~~~~~-~---~~~  197 (275)
                      .+|+++|++++++|||+||..+....+|.|.+| ||++++||++.+||+||++||||+++..... ++.+.. .   ...
T Consensus        35 ~av~v~i~~~~g~vLL~rR~~~~~~~PG~w~~~~gG~ve~GEt~~~aa~REl~EEtGl~~~~~~~~~~~~~~~~~~~~~~  114 (184)
T PRK03759         35 LAFSCYLFDADGRLLVTRRALSKKTWPGVWTNSCCGHPQPGESLEDAVIRRCREELGVEITDLELVLPDFRYRATDPNGI  114 (184)
T ss_pred             eEEEEEEEcCCCeEEEEEccCCCCCCCCcccccccCCCCCCCCHHHHHHHHHHHHhCCCccccccccceEEEEEecCCCc
Confidence            457788999999999999876555568899987 8999999999999999999999999864432 322211 1   111


Q ss_pred             -cceEEEEEEEEEecCCccccCCccccceEEEEeHhhHhcCCCccc
Q 039665          198 -FRKSDLFFVCMLRPRNFHIQKQDSEIAAAQWMQAEDYAAQPYVLK  242 (275)
Q Consensus       198 -~~~~~~~f~~~~~~~~~~~~~~~~E~~~~~Wv~~eel~~~~~~~~  242 (275)
                       .....++|++...   ..+.++++|+.+++|++++++.++.....
T Consensus       115 ~~~~~~~vf~~~~~---~~~~~~~~Ev~~~~W~~~~el~~~i~~~~  157 (184)
T PRK03759        115 VENEVCPVFAARVT---SALQPNPDEVMDYQWVDPADLLRAVDATP  157 (184)
T ss_pred             eeeEEEEEEEEEEC---CCCCCChhHeeeEEEECHHHHHHHHHhCC
Confidence             1234456777553   34556778999999999999988755443

>cd04666 Nudix_Hydrolase_9 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.77  E-value=9.8e-18  Score=131.35  Aligned_cols=107  Identities=23%  Similarity=0.272  Sum_probs=80.0

Q ss_pred             EEEEEEeCC---ceEEEEEEecCCCCCCCceeCcceeccCCCCHHHHHHHHHHHHhCCCccee-EEEEEEeeeccc----
Q 039665          126 VGAFVMNNK---RELLVVQENNGALKGTGVWKLPTGTIEEGEDICAAAVREVKEETGIDTEFV-EVLAFRQSHRSF----  197 (275)
Q Consensus       126 v~~vv~~~~---~~vLLv~r~~~~~~~~~~w~lPgG~ve~gEs~~~aA~REl~EEtGl~~~~~-~~l~~~~~~~~~----  197 (275)
                      +++|+++.+   ++|||+++.+     .+.|.||||+++.||++.+||+||++||||+.+... ..++.+......    
T Consensus         3 ~g~v~~~~~~~~~~vLLv~~~~-----~~~w~~PgG~ve~~E~~~~aa~RE~~EEtG~~~~~~~~~l~~~~~~~~~~~~~   77 (122)
T cd04666           3 AGAIPYRETGGEVEVLLVTSRR-----TGRWIVPKGGPEKDESPAEAAAREAWEEAGVRGKIGKRPLGRFEYRKRSKNRP   77 (122)
T ss_pred             EEEEEEEEcCCceEEEEEEecC-----CCeEECCCCCcCCCCCHHHHHHHHHHHHhCCcccccceEEEEEEeeecCCCCC
Confidence            566777643   6899999873     278999999999999999999999999999998777 778776654432    


Q ss_pred             cceEEEEEEEEEecCCccccCCccccceEEEEeHhhHhcCCC
Q 039665          198 FRKSDLFFVCMLRPRNFHIQKQDSEIAAAQWMQAEDYAAQPY  239 (275)
Q Consensus       198 ~~~~~~~f~~~~~~~~~~~~~~~~E~~~~~Wv~~eel~~~~~  239 (275)
                      .....++|.+......  ...+..|+.+++|++++++.++..
T Consensus        78 ~~~~~~~f~~~~~~~~--~~~~~~e~~~~~W~~~~ea~~~~~  117 (122)
T cd04666          78 PRCEVAVFPLEVTEEL--DEWPEMHQRKRKWFSPEEAALLVE  117 (122)
T ss_pred             ceEEEEEEEEEEeccc--cCCcccCceEEEEecHHHHHHhcC
Confidence            2345566666554322  222345678999999999987644

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate s

>PRK15009 GDP-mannose pyrophosphatase NudK; Provisional

Probab=99.77  E-value=8.4e-18  Score=141.39  Aligned_cols=118  Identities=13%  Similarity=0.040  Sum_probs=96.4

Q ss_pred             eEEEEEEEeC-CceEEEEEEecCCC-----CCCCceeCcceeccCCCCHHHHHHHHHHHHhCCCcceeEEEEEEeeeccc
Q 039665          124 VGVGAFVMNN-KRELLVVQENNGAL-----KGTGVWKLPTGTIEEGEDICAAAVREVKEETGIDTEFVEVLAFRQSHRSF  197 (275)
Q Consensus       124 v~v~~vv~~~-~~~vLLv~r~~~~~-----~~~~~w~lPgG~ve~gEs~~~aA~REl~EEtGl~~~~~~~l~~~~~~~~~  197 (275)
                      -+|++++++. +++|+|++|+|.+.     .++..|++|+|.+|+| ++++||+||++||||+.+..+..++.+...++.
T Consensus        46 ~~v~Vl~~~~~~~~vvLvrQyR~~v~~~~~~~~~~lElPAG~vd~~-~p~~aA~REL~EETGy~a~~~~~l~~~~~spG~  124 (191)
T PRK15009         46 NGATILLYNAKKKTVVLIRQFRVATWVNGNESGQLIETCAGLLDND-EPEVCIRKEAIEETGYEVGEVRKLFELYMSPGG  124 (191)
T ss_pred             CEEEEEEEECCCCEEEEEEcccccccccCCCCceEEEEeccccCCC-CHHHHHHHHHHHhhCCccceEEEeeEEEcCCcc
Confidence            3577788885 67999999998764     1567899999999976 699999999999999999999999988888888


Q ss_pred             cceEEEEEEEEEecC--CccccCCccccceEEEEeHhhHhcCCCccc
Q 039665          198 FRKSDLFFVCMLRPR--NFHIQKQDSEIAAAQWMQAEDYAAQPYVLK  242 (275)
Q Consensus       198 ~~~~~~~f~~~~~~~--~~~~~~~~~E~~~~~Wv~~eel~~~~~~~~  242 (275)
                      .+...++|++.....  ......+++|..++.|+|++|+.++.....
T Consensus       125 s~e~~~lf~a~~~~~~~~~~~~~de~E~iev~~~~~~e~~~~i~~G~  171 (191)
T PRK15009        125 VTELIHFFIAEYSDSQRANAGGGVEDEDIEVLELPFSQALEMIKTGE  171 (191)
T ss_pred             cCcEEEEEEEEECchhcccCCCCCCCceEEEEEEcHHHHHHHHHcCC
Confidence            889999999976321  122233567888999999999998866544

>cd02885 IPP_Isomerase Isopentenyl diphosphate (IPP) isomerase, a member of the Nudix hydrolase superfamily, is a key enzyme in the isoprenoid biosynthetic pathway

Probab=99.76  E-value=4.9e-18  Score=139.89  Aligned_cols=116  Identities=20%  Similarity=0.292  Sum_probs=86.1

Q ss_pred             eeEEEEEEEeCCceEEEEEEecCCCCCCCceeCc-ceeccCCCCHHHHHHHHHHHHhCCCcceeEEE-EEEeee--c-cc
Q 039665          123 RVGVGAFVMNNKRELLVVQENNGALKGTGVWKLP-TGTIEEGEDICAAAVREVKEETGIDTEFVEVL-AFRQSH--R-SF  197 (275)
Q Consensus       123 ~v~v~~vv~~~~~~vLLv~r~~~~~~~~~~w~lP-gG~ve~gEs~~~aA~REl~EEtGl~~~~~~~l-~~~~~~--~-~~  197 (275)
                      +.+|++++++++++|||+||.......+|.|.+| ||++++||++.+||+||++||||+.+....++ +.....  . ..
T Consensus        30 ~~~v~v~i~~~~~~iLl~kR~~~~~~~Pg~w~~~~gG~ie~GEt~~eaa~REl~EEtGl~~~~~~~~~~~~~~~~~~~~~  109 (165)
T cd02885          30 HRAFSVFLFNSKGRLLLQRRALSKYTFPGLWTNTCCSHPLPGEGVKDAAQRRLREELGITGDLLELVLPRFRYRAPDDGG  109 (165)
T ss_pred             eeEEEEEEEcCCCcEEEEeccCCCccCCCcccccccCCCCCCCCHHHHHHHHHHHHhCCCccchhhccceEEEEEEcCCC
Confidence            3457788999999999999987665678999997 89999999999999999999999998776664 322211  1 11


Q ss_pred             --cceEEEEEEEEEecCCccccCCccccceEEEEeHhhHhcCCCcc
Q 039665          198 --FRKSDLFFVCMLRPRNFHIQKQDSEIAAAQWMQAEDYAAQPYVL  241 (275)
Q Consensus       198 --~~~~~~~f~~~~~~~~~~~~~~~~E~~~~~Wv~~eel~~~~~~~  241 (275)
                        .....++|.+...   .....+.+|+.+++|++++++.++....
T Consensus       110 ~~~~~i~~~f~~~~~---~~~~~~~~Ev~~~~w~~~~el~~~~~~~  152 (165)
T cd02885         110 LVEHEIDHVFFARAD---VTLIPNPDEVSEYRWVSLEDLKELVAAA  152 (165)
T ss_pred             ceeeEEEEEEEEEeC---CCCCCCccceeEEEEECHHHHHHHHHhC
Confidence              1123355555432   2334467899999999999999875544

Isoprenoids comprise a large family of natural products including sterols, carotenoids, dolichols and prenylated proteins. These compounds are synthesized from two precursors: isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP). IPP isomerase catalyzes the interconversion of IPP and DMAPP by a stereoselective antarafacial transposition of hydrogen. The enzyme requires one Mn2+ or Mg2+ ion in its active site to fold into an active conformation and also contains the Nudix motif, a highly conserved 23-residue block (GX5EX7REUXEEXGU, where U = I, L or V), that functions as a metal binding and catalytic site. The metal binding site is present within the active site and plays structural and catalytical roles. IPP isomerase is well represented in several bacteria, archaebacteria and eukaryotes, including fungi, mamm

>cd04667 Nudix_Hydrolase_10 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.76  E-value=1.1e-17  Score=128.78  Aligned_cols=104  Identities=26%  Similarity=0.367  Sum_probs=78.2

Q ss_pred             EEEEEEeCCceEEEEEEecCCCCCCCceeCcceeccCCCCHHHHHHHHHHHHhCCCcceeEEEEEEeeeccccceEEEEE
Q 039665          126 VGAFVMNNKRELLVVQENNGALKGTGVWKLPTGTIEEGEDICAAAVREVKEETGIDTEFVEVLAFRQSHRSFFRKSDLFF  205 (275)
Q Consensus       126 v~~vv~~~~~~vLLv~r~~~~~~~~~~w~lPgG~ve~gEs~~~aA~REl~EEtGl~~~~~~~l~~~~~~~~~~~~~~~~f  205 (275)
                      +++|+ ..++++||++|.+      +.|.+|||++++||++.+||.||++||||+.+..+..++.+..    .....++|
T Consensus         3 a~~i~-~~~~~vLlv~r~~------~~w~~PgG~ve~gE~~~~aa~REl~EEtGl~~~~~~~~~~~~~----~~~~~~~f   71 (112)
T cd04667           3 ATVIC-RRGGRVLLVRKSG------SRWALPGGKIEPGETPLQAARRELQEETGLQGLDLLYLFHVDG----GSTRHHVF   71 (112)
T ss_pred             eEEEE-ecCCEEEEEEcCC------CcEeCCCCcCCCCCCHHHHHHHHHHHHhCCcccceEEEEEEeC----CCEEEEEE
Confidence            33444 4467999999862      7899999999999999999999999999999877776665432    12344667


Q ss_pred             EEEEecCCccccCCccccceEEEEeHhhHhcCCCccc
Q 039665          206 VCMLRPRNFHIQKQDSEIAAAQWMQAEDYAAQPYVLK  242 (275)
Q Consensus       206 ~~~~~~~~~~~~~~~~E~~~~~Wv~~eel~~~~~~~~  242 (275)
                      +|.+..  .....++.|+.+++|++++++.++..+..
T Consensus        72 ~~~~~~--~~~~~~~~e~~~~~W~~~~el~~~~~~~~  106 (112)
T cd04667          72 VASVPP--SAQPKPSNEIADCRWLSLDALGDLNASAA  106 (112)
T ss_pred             EEEcCC--cCCCCCchheeEEEEecHHHhhhcccchh
Confidence            765432  22233567889999999999999877654

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate

>PRK10707 putative NUDIX hydrolase; Provisional

Probab=99.73  E-value=8.2e-17  Score=135.34  Aligned_cols=116  Identities=22%  Similarity=0.196  Sum_probs=87.8

Q ss_pred             eeEEEEEEEe--CCceEEEEEEecCCCCCCCceeCcceeccCC-CCHHHHHHHHHHHHhCCCcceeEEEEEEeeeccccc
Q 039665          123 RVGVGAFVMN--NKRELLVVQENNGALKGTGVWKLPTGTIEEG-EDICAAAVREVKEETGIDTEFVEVLAFRQSHRSFFR  199 (275)
Q Consensus       123 ~v~v~~vv~~--~~~~vLLv~r~~~~~~~~~~w~lPgG~ve~g-Es~~~aA~REl~EEtGl~~~~~~~l~~~~~~~~~~~  199 (275)
                      +.+++++++.  .++.+||+||.+......|.|+||||++|++ |++.+||+||++||||+.+..+..++.........+
T Consensus        30 ~~aavvl~l~~~~~~~vLl~~R~~~~r~~~G~~~~PGG~~e~~de~~~~tA~REl~EEtGl~~~~~~~lg~l~~~~~~~~  109 (190)
T PRK10707         30 RQAAVLIPIVRRPQPTLLLTQRSIHLRKHAGQVAFPGGAVDPTDASLIATALREAQEEVAIPPSAVEVIGVLPPVDSSTG  109 (190)
T ss_pred             CCeEEEEEEEECCCCEEEEEEeCCcccCCCCcEEcCCcccCCCcccHHHHHHHHHHHHHCCCccceEEEEEeeeeeccCC
Confidence            3345555553  4568999987765544678999999999985 679999999999999999999999988775555555


Q ss_pred             eEEEEEEEEEecCCccccCCccccceEEEEeHhhHhcCCC
Q 039665          200 KSDLFFVCMLRPRNFHIQKQDSEIAAAQWMQAEDYAAQPY  239 (275)
Q Consensus       200 ~~~~~f~~~~~~~~~~~~~~~~E~~~~~Wv~~eel~~~~~  239 (275)
                      .....|++.+.... ....+++|..++.|+|++++.++..
T Consensus       110 ~~~~~~v~~~~~~~-~~~~d~~Ev~~v~~vpl~e~~~~~~  148 (190)
T PRK10707        110 YQVTPVVGIIPPDL-PYRANEDEVAAVFEMPLAEALHLGR  148 (190)
T ss_pred             cEEEEEEEEECCCC-CCCCChhhhheEEEEeHHHHhCccc
Confidence            55566666544322 4455778999999999999988753

>cd04685 Nudix_Hydrolase_26 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.72  E-value=7.6e-17  Score=128.17  Aligned_cols=113  Identities=22%  Similarity=0.310  Sum_probs=80.5

Q ss_pred             EEEEEEEeCCceEEEEEEecCCCCCCCceeCcceeccCCCCHHHHHHHHHHHHhCCCc-ceeEEEEEEe----eeccccc
Q 039665          125 GVGAFVMNNKRELLVVQENNGALKGTGVWKLPTGTIEEGEDICAAAVREVKEETGIDT-EFVEVLAFRQ----SHRSFFR  199 (275)
Q Consensus       125 ~v~~vv~~~~~~vLLv~r~~~~~~~~~~w~lPgG~ve~gEs~~~aA~REl~EEtGl~~-~~~~~l~~~~----~~~~~~~  199 (275)
                      ++.+++++.+++|||+++.+.....++.|.+|||++++||++.+||.||++||||+.+ .....+....    .......
T Consensus         2 ~~~~~i~~~~g~vLl~r~~~~~~~~~~~w~~PgG~ve~gE~~~~a~~Re~~EE~G~~~~~~~~~~~~~~~~f~~~~~~~~   81 (133)
T cd04685           2 AARVVLLDPDDRVLLLRGDDPDSPGPDWWFTPGGGVEPGESPEQAARRELREETGITVADLGPPVWRRDAAFTFLGVDGR   81 (133)
T ss_pred             eEEEEEEcCCCeEEEEEEeCCCCCCCCEEECCcCCCCCCCCHHHHHHHHHHHHHCCccccccceEEEEEEEEEecCccce
Confidence            4788999999999999987543235689999999999999999999999999999998 5444443222    1222233


Q ss_pred             eEEEEEEEEEecCCcc-cc--CC-ccccceEEEEeHhhHhcC
Q 039665          200 KSDLFFVCMLRPRNFH-IQ--KQ-DSEIAAAQWMQAEDYAAQ  237 (275)
Q Consensus       200 ~~~~~f~~~~~~~~~~-~~--~~-~~E~~~~~Wv~~eel~~~  237 (275)
                      ...++|+|........ ..  .. ..++..++|++++++.+.
T Consensus        82 ~~~~~f~~~~~~~~~~~~~~~~~E~~~~~~~~W~~~~el~~~  123 (133)
T cd04685          82 QEERFFLARTPRTEPSPAGWTALERRSILGWRWWTRAELAAT  123 (133)
T ss_pred             eeEEEEEEEcCCccccCCCCChhhhhhcccccCCCHHHHhhC
Confidence            4567888866432111 11  11 134568999999999886

Enzymes belonging to this superfamily requires a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate

>TIGR02150 IPP_isom_1 isopentenyl-diphosphate delta-isomerase, type 1

Probab=99.72  E-value=7.8e-17  Score=131.85  Aligned_cols=115  Identities=23%  Similarity=0.293  Sum_probs=83.5

Q ss_pred             cceeEEEEEEEeCCceEEEEEEecCCCCCCCceeCc-ceeccCCCCHHHHHHHHHHHHhCCCcceeE--EEEEEeeecc-
Q 039665          121 SHRVGVGAFVMNNKRELLVVQENNGALKGTGVWKLP-TGTIEEGEDICAAAVREVKEETGIDTEFVE--VLAFRQSHRS-  196 (275)
Q Consensus       121 ~~~v~v~~vv~~~~~~vLLv~r~~~~~~~~~~w~lP-gG~ve~gEs~~~aA~REl~EEtGl~~~~~~--~l~~~~~~~~-  196 (275)
                      .|+ +|+++|+|.+++|||+||.......+|.|++| ||+++.||  .+||+||++||||+.+....  .++.+..... 
T Consensus        26 ~h~-~v~v~v~~~~g~vLl~kR~~~k~~~PG~W~~~~gG~v~~GE--~eaa~REl~EE~Gl~~~~~~l~~~~~~~~~~~~  102 (158)
T TIGR02150        26 LHR-AFSVFLFNEEGQLLLQRRALSKITWPGVWTNSCCSHPLPGE--LEAAIRRLREELGIPADDVPLTVLPRFSYRARD  102 (158)
T ss_pred             eEE-EEEEEEEcCCCeEEEEeccCCCcCCCCCccccccCCCCccc--HHHHHHHHHHHHCCCccccceEEcceEEEEEec
Confidence            444 47788999999999999987665678999997 79999999  49999999999999987654  2332221111 


Q ss_pred             --ccceEEEEEEEEEecCCccccCCccccceEEEEeHhhHhcCCCcc
Q 039665          197 --FFRKSDLFFVCMLRPRNFHIQKQDSEIAAAQWMQAEDYAAQPYVL  241 (275)
Q Consensus       197 --~~~~~~~~f~~~~~~~~~~~~~~~~E~~~~~Wv~~eel~~~~~~~  241 (275)
                        ......++|.|...  . .+.++++|+.+++|++++|+.++....
T Consensus       103 ~~g~~~~~~~f~~~~~--~-~~~~~~~Ev~~~~W~~~~el~~~~~~~  146 (158)
T TIGR02150       103 AWGEHELCPVFFARAP--V-PLNPNPEEVAEYRWVSLEELKEILKAP  146 (158)
T ss_pred             CCCcEEEEEEEEEecC--C-cccCChhHeeeEEEeCHHHHHHHHhcC
Confidence              11234455655432  2 455567799999999999998875543

This model represents type 1 of two non-homologous families of the enzyme isopentenyl-diphosphate delta-isomerase (IPP isomerase). IPP is an essential building block for many compounds, including enzyme cofactors, sterols, and prenyl groups. This inzyme interconverts isopentenyl diphosphate and dimethylallyl diphosphate.

>PRK05379 bifunctional nicotinamide mononucleotide adenylyltransferase/ADP-ribose pyrophosphatase; Provisional

Probab=99.71  E-value=1.7e-16  Score=144.94  Aligned_cols=114  Identities=25%  Similarity=0.380  Sum_probs=80.9

Q ss_pred             cceeEEEEEEEeCCceEEEEEEecCCCCCCCceeCcceeccCCCCHHHHHHHHHHHHhCCCcceeEEEEEEe-----eec
Q 039665          121 SHRVGVGAFVMNNKRELLVVQENNGALKGTGVWKLPTGTIEEGEDICAAAVREVKEETGIDTEFVEVLAFRQ-----SHR  195 (275)
Q Consensus       121 ~~~v~v~~vv~~~~~~vLLv~r~~~~~~~~~~w~lPgG~ve~gEs~~~aA~REl~EEtGl~~~~~~~l~~~~-----~~~  195 (275)
                      ...++|.++|++ +++|||++|...+  ++|.|.+|||++++||++.+||+||++||||+++....+.+...     ..+
T Consensus       201 ~~~vtv~avv~~-~g~VLLvrR~~~p--~~g~W~lPGG~ve~gEt~~~Aa~REl~EETGl~v~~~~l~~~~~~~~~f~~p  277 (340)
T PRK05379        201 PTFVTVDAVVVQ-SGHVLLVRRRAEP--GKGLWALPGGFLEQDETLLDACLRELREETGLKLPEPVLRGSIRDQQVFDHP  277 (340)
T ss_pred             CcceEEEEEEEE-CCEEEEEEecCCC--CCCeEECCcccCCCCCCHHHHHHHHHHHHHCCcccccccceeeeeeEEEcCC
Confidence            345778777776 6799999998644  57999999999999999999999999999999876554433221     111


Q ss_pred             c---ccceEEEEEEEEEecCCccccCCccccceEEEEeHhhHhcC
Q 039665          196 S---FFRKSDLFFVCMLRPRNFHIQKQDSEIAAAQWMQAEDYAAQ  237 (275)
Q Consensus       196 ~---~~~~~~~~f~~~~~~~~~~~~~~~~E~~~~~Wv~~eel~~~  237 (275)
                      .   ......++|++.+...........+|..+++|++++++..+
T Consensus       278 ~r~~~~~~i~~~f~~~~~~~~~~~~~~~de~~~~~W~~~~el~~~  322 (340)
T PRK05379        278 GRSLRGRTITHAFLFEFPAGELPRVKGGDDADKARWVPLAELLAM  322 (340)
T ss_pred             CCCCCCcEEEEEEEEEecCCccCccCCCCceeeEEEEEHHHhhhh
Confidence            1   12244567777654322111124568899999999999875

>cd02883 Nudix_Hydrolase Nudix hydrolase is a superfamily of enzymes found in all three kingdoms of life, and it catalyzes the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.71  E-value=2.9e-16  Score=120.95  Aligned_cols=113  Identities=27%  Similarity=0.487  Sum_probs=83.8

Q ss_pred             EEEEEEEeCCceEEEEEEecCCCCCCCceeCcceeccCCCCHHHHHHHHHHHHhCCCcceeEEEEEEeeecc--ccceEE
Q 039665          125 GVGAFVMNNKRELLVVQENNGALKGTGVWKLPTGTIEEGEDICAAAVREVKEETGIDTEFVEVLAFRQSHRS--FFRKSD  202 (275)
Q Consensus       125 ~v~~vv~~~~~~vLLv~r~~~~~~~~~~w~lPgG~ve~gEs~~~aA~REl~EEtGl~~~~~~~l~~~~~~~~--~~~~~~  202 (275)
                      ++++++++.++++||++|.+.   .++.|.+|||+++.||++.++|+||++||+|+.+.....++.+.....  ......
T Consensus         2 ~~~~i~~~~~~~ill~kr~~~---~~~~~~~p~G~~~~~e~~~~~a~RE~~EE~Gl~~~~~~~~~~~~~~~~~~~~~~~~   78 (123)
T cd02883           2 AVGAVILDEDGRVLLVRRADS---PGGLWELPGGGVEPGETLEEAAIREVREETGLDVDVLRLLGVYEVESPDEGEHAVV   78 (123)
T ss_pred             ceEEEEECCCCCEEEEEEcCC---CCCeEeCCcccccCCCCHHHHHHHHHHHhhCccceeeeEEEEEEeeccCCCceEEE
Confidence            467888888789999999864   468999999999999999999999999999998875555554443333  234555


Q ss_pred             EEEEEEEecCCccccCCccccceEEEEeHhhHhcCCCcc
Q 039665          203 LFFVCMLRPRNFHIQKQDSEIAAAQWMQAEDYAAQPYVL  241 (275)
Q Consensus       203 ~~f~~~~~~~~~~~~~~~~E~~~~~Wv~~eel~~~~~~~  241 (275)
                      .+|.|........ ..++.|..+.+|++++++.++....
T Consensus        79 ~~~~~~~~~~~~~-~~~~~e~~~~~w~~~~~l~~~~~~~  116 (123)
T cd02883          79 FVFLARLVGGEPT-LLPPDEISEVRWVTLDELPALALSP  116 (123)
T ss_pred             EEEEEEeCCCCcC-CCCCCccceEEEEcHHHCccccccc
Confidence            5666654432221 2355778889999999999865443

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+ for their activity. Members of this family are recognized by a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which forms a structural motif that functions as a metal binding and catalytic site. Substrates of nudix hydrolase include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance and "house-cleaning" enzy

>PLN03143 nudix hydrolase; Provisional

Probab=99.68  E-value=1.5e-15  Score=134.61  Aligned_cols=113  Identities=19%  Similarity=0.220  Sum_probs=81.8

Q ss_pred             EEEEEEE-eCCce--EEEEEEecCCCCCCCceeCcceeccC-CCCHHHHHHHHHHHHhCCCcc--eeEEEE---------
Q 039665          125 GVGAFVM-NNKRE--LLVVQENNGALKGTGVWKLPTGTIEE-GEDICAAAVREVKEETGIDTE--FVEVLA---------  189 (275)
Q Consensus       125 ~v~~vv~-~~~~~--vLLv~r~~~~~~~~~~w~lPgG~ve~-gEs~~~aA~REl~EEtGl~~~--~~~~l~---------  189 (275)
                      +|+++++ +.+++  ++|++|+|.+. +...|+||||.+|+ +|++.+||+||++||||+.+.  .+..+.         
T Consensus       130 aVaVL~~l~~~ge~~VlLVrQ~R~pv-g~~~lE~PAG~lD~~~edp~~aA~REL~EETG~~~~a~~lv~L~~~~~~~~g~  208 (291)
T PLN03143        130 AVAVLILLESEGETYAVLTEQVRVPV-GKFVLELPAGMLDDDKGDFVGTAVREVEEETGIKLKLEDMVDLTAFLDPSTGC  208 (291)
T ss_pred             eEEEEEEEeCCCCEEEEEEEeEecCC-CcEEEEecccccCCCCCCHHHHHHHHHHHHHCCccccceEEEeeeccccCcCc
Confidence            4555554 54444  99999997654 66799999999997 489999999999999999864  343342         


Q ss_pred             EEeeeccccceEEEEEEEEEecCCc---------cccCCccccceEEEEeHhhHhcCC
Q 039665          190 FRQSHRSFFRKSDLFFVCMLRPRNF---------HIQKQDSEIAAAQWMQAEDYAAQP  238 (275)
Q Consensus       190 ~~~~~~~~~~~~~~~f~~~~~~~~~---------~~~~~~~E~~~~~Wv~~eel~~~~  238 (275)
                      .++..++..+...++|++.......         ....++.|..++.|++++++.++.
T Consensus       209 ~v~pspG~~dE~i~Lfla~~~v~~~~l~~l~~~~~~l~degE~Iev~~vpl~eiw~~~  266 (291)
T PLN03143        209 RMFPSPGGCDEEISLFLYRGHVDKETIRQLQGKETGLRDHGELIKVHVVPYRELWRMT  266 (291)
T ss_pred             eEEecCCccCCeEEEEEEccccchhhhcccccccCCCCCCCcEEEEEEEEHHHHHHHH
Confidence            4556666667777888875432211         112255688899999999998875

>cd04661 MRP_L46 Mitochondrial ribosomal protein L46 (MRP L46) is a component of the large subunit (39S) of the mammalian mitochondrial ribosome and a member of the Nudix hydrolase superfamily

Probab=99.68  E-value=3e-16  Score=124.57  Aligned_cols=98  Identities=21%  Similarity=0.328  Sum_probs=70.2

Q ss_pred             CceEEEEEEecCCCCCCCceeCcceeccCCCCHHHHHHHHHHHHhCCCcceeEEEEE-----Eeeec-------cccceE
Q 039665          134 KRELLVVQENNGALKGTGVWKLPTGTIEEGEDICAAAVREVKEETGIDTEFVEVLAF-----RQSHR-------SFFRKS  201 (275)
Q Consensus       134 ~~~vLLv~r~~~~~~~~~~w~lPgG~ve~gEs~~~aA~REl~EEtGl~~~~~~~l~~-----~~~~~-------~~~~~~  201 (275)
                      ++++||+|+..+   ..+.|.||||++++||++.+||+||++||||+.+.. .+++.     +....       ...+..
T Consensus        12 ~~~~Llvk~~~~---~~g~W~fPgG~ve~gEt~~eaa~REl~EEtGl~v~~-~~i~~~~~~~~~~~~~~~~~~~~~~~~~   87 (132)
T cd04661          12 DTLVLLVQQKVG---SQNHWILPQGKREEGETLRQTAERTLKELCGNNLKA-KFYGNAPVGFYKYKYPKAVRNEGIVGAK   87 (132)
T ss_pred             CcEEEEEEeecC---CCCeeECCcccccCCCCHHHHHHHHHHHhhCCCceE-EEEEecCcEEEEEecCcccccccCcccE
Confidence            568999998743   258999999999999999999999999999998764 23322     11111       112245


Q ss_pred             EEEEEEEEecCCccccCCccccceEEEEeHhhHhcCC
Q 039665          202 DLFFVCMLRPRNFHIQKQDSEIAAAQWMQAEDYAAQP  238 (275)
Q Consensus       202 ~~~f~~~~~~~~~~~~~~~~E~~~~~Wv~~eel~~~~  238 (275)
                      .++|.|...  ++.+. ...|+.+++|++++|+.++.
T Consensus        88 ~~~f~~~~~--~g~~~-~~~e~~~~~W~~~~el~~~l  121 (132)
T cd04661          88 VFFFKARYM--SGQFE-LSQNQVDFKWLAKEELQKYL  121 (132)
T ss_pred             EEEEEEEEe--cCccc-cCCCcceeEecCHHHHHhhc
Confidence            567777554  33333 24788999999999999864

MRPs are thought to be involved in the maintenance of the mitochondrial DNA. In general, members of the Nudix superfamily require a divalent cation, such as Mg2+ or Mn2+, for activity and contain the Nudix motif, a highly conserved 23-residue block (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. MRP L46 appears to contain a modified nudix motif.

>cd03676 Nudix_hydrolase_3 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.67  E-value=3.4e-16  Score=130.69  Aligned_cols=112  Identities=16%  Similarity=0.255  Sum_probs=81.8

Q ss_pred             EEEEeCC--ceEEEEEEecCCCCCCCce-eCcceeccCCCCHHHHHHHHHHHHhCCCcceeE---EEEEEeeec---c--
Q 039665          128 AFVMNNK--RELLVVQENNGALKGTGVW-KLPTGTIEEGEDICAAAVREVKEETGIDTEFVE---VLAFRQSHR---S--  196 (275)
Q Consensus       128 ~vv~~~~--~~vLLv~r~~~~~~~~~~w-~lPgG~ve~gEs~~~aA~REl~EEtGl~~~~~~---~l~~~~~~~---~--  196 (275)
                      +++.|.+  ++||+.||...+...+|.| .+|||++++||++.+||+||++||||+.+....   .++.+....   .  
T Consensus        39 ~~~~~~~~~~~l~lqrRs~~K~~~Pg~wd~~~~G~v~~gE~~~~aA~REl~EE~Gl~~~~~~~l~~~g~~~~~~~~~~~~  118 (180)
T cd03676          39 GYVRDEDGGLRIWIPRRSPTKATWPGMLDNLVAGGLGHGEGPEETLVKECDEEAGLPEDLVRQLKPVGVVSYLREGEAGG  118 (180)
T ss_pred             EEEEcCCCCeEEEEEeccCCCCCCCCceeeecccCCCCCCCHHHHHHHHHHHHhCCCHHHHhhceeccEEEEEEEcCCCc
Confidence            4566765  8999999998887789999 599999999999999999999999999987543   333222111   1  


Q ss_pred             ccceEEEEEEEEEecCCccccCCccccceEEEEeHhhHhcCCCc
Q 039665          197 FFRKSDLFFVCMLRPRNFHIQKQDSEIAAAQWMQAEDYAAQPYV  240 (275)
Q Consensus       197 ~~~~~~~~f~~~~~~~~~~~~~~~~E~~~~~Wv~~eel~~~~~~  240 (275)
                      ......++|.+.+. ....+.++++|+.++.|++++|+.++...
T Consensus       119 ~~~e~~~~f~~~~~-~~~~~~~~~~Ev~~~~~~~~~el~~~l~~  161 (180)
T cd03676         119 LQPEVEYVYDLELP-PDFIPAPQDGEVESFRLLTIDEVLRALKE  161 (180)
T ss_pred             EeeeEEEEEEEEcC-CCCeeCCCCCcEeEEEEECHHHHHHHHHc
Confidence            12244555655442 22234557789999999999999877443

Enzymes belong to this superfamily requires a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate spe

>TIGR02705 nudix_YtkD nucleoside triphosphatase YtkD

Probab=99.67  E-value=1.2e-15  Score=123.73  Aligned_cols=123  Identities=15%  Similarity=0.142  Sum_probs=90.5

Q ss_pred             eeEEEEEEEeCCceEEEEEEecCCCCCCCceeCcceeccCCCCHHHHHHHHHHHHhCCCcceeEEEEEEeeeccccceEE
Q 039665          123 RVGVGAFVMNNKRELLVVQENNGALKGTGVWKLPTGTIEEGEDICAAAVREVKEETGIDTEFVEVLAFRQSHRSFFRKSD  202 (275)
Q Consensus       123 ~v~v~~vv~~~~~~vLLv~r~~~~~~~~~~w~lPgG~ve~gEs~~~aA~REl~EEtGl~~~~~~~l~~~~~~~~~~~~~~  202 (275)
                      ...|.++++++ +++||+++++      ..|++|||++|+||++.+||+||++||||+.+..+..++.+...........
T Consensus        24 ~~~V~ii~~~~-~~~LL~~~~~------~~~elPgG~vE~gEt~~eaA~REl~EETG~~~~~~~~lg~~~~~~~~~~~~~   96 (156)
T TIGR02705        24 PNHVLVIPRYK-DQWLLTEHKR------RGLEFPGGKVEPGETSKEAAIREVMEETGAIVKELHYIGQYEVEGESTDFVK   96 (156)
T ss_pred             CCEEEEEEEEC-CEEEEEEEcC------CcEECCceecCCCCCHHHHHHHHHHHHhCcEeeeeEEEEEEEecCCCcEEEE
Confidence            34566666664 4899998873      3599999999999999999999999999999999999998877776666777


Q ss_pred             EEEEEEEecCCccccCCccccceEE-EEeHhhHhcCCCcccc-h--HHHHHHHHHHhhc
Q 039665          203 LFFVCMLRPRNFHIQKQDSEIAAAQ-WMQAEDYAAQPYVLKH-Q--MFNYICQICLTKS  257 (275)
Q Consensus       203 ~~f~~~~~~~~~~~~~~~~E~~~~~-Wv~~eel~~~~~~~~~-~--~~~~~~~~~~~~~  257 (275)
                      ++|+|.....  .   ..+|..+.. +++++++.++...... .  +-...+..|++.+
T Consensus        97 ~vf~A~~~~~--~---~~~e~~E~~~~~~~~~~~~~~~~g~~~s~~~~d~~~~~~~~~~  150 (156)
T TIGR02705        97 DVYFAEVSAL--E---SKDDYLETKGPVLLQEIPDIIKADPRFSFIMKDDVLLKCLERA  150 (156)
T ss_pred             EEEEEEEecc--c---cCCCceeeEeEEEHHHHHHHHhcCCcccEEEchHHHHHHHHHH
Confidence            8888876532  2   124545555 7999999887655431 1  3344555666654

The functional assignment to the proteins of this family is contentious. Reference challenges the findings of reference, both in interpretation and in enzyme assay results. This protein belongs to the nudix family and shares some sequence identity with E. coli MutT but appears not to be functionally interchangeable with it.

>PRK08999 hypothetical protein; Provisional

Probab=99.65  E-value=3.4e-15  Score=135.02  Aligned_cols=113  Identities=19%  Similarity=0.309  Sum_probs=85.8

Q ss_pred             EEEEEEeCCceEEEEEEecCCCCCCCceeCcceeccCCCCHHHHHHHHHHHHhCCCcceeEEEEEEeeeccccceEEEEE
Q 039665          126 VGAFVMNNKRELLVVQENNGALKGTGVWKLPTGTIEEGEDICAAAVREVKEETGIDTEFVEVLAFRQSHRSFFRKSDLFF  205 (275)
Q Consensus       126 v~~vv~~~~~~vLLv~r~~~~~~~~~~w~lPgG~ve~gEs~~~aA~REl~EEtGl~~~~~~~l~~~~~~~~~~~~~~~~f  205 (275)
                      +.+++++.+++|||+||...+. ++|.|+||||++++||++.+||.||++||||+.+.....+....+.+.......++|
T Consensus         8 ~~~vi~~~~~~vLL~kR~~~~~-~~g~w~~PgG~ve~gE~~~~aa~RE~~EE~Gl~~~~~~~l~~~~h~~~~~~~~i~~y   86 (312)
T PRK08999          8 AAGVIRDADGRILLARRPEGKH-QGGLWEFPGGKVEPGETVEQALARELQEELGIEVTAARPLITVRHDYPDKRVRLDVR   86 (312)
T ss_pred             EEEEEECCCCeEEEEEecCCCC-CCCeEECCccCCCCCCCHHHHHHHHHHHHhCCceecceeEEEEEEEcCCCeEEEEEE
Confidence            4456667778999999976553 689999999999999999999999999999999877666666665555545555566


Q ss_pred             EEEEecCCccccCCccccceEEEEeHhhHhcCCCcccc
Q 039665          206 VCMLRPRNFHIQKQDSEIAAAQWMQAEDYAAQPYVLKH  243 (275)
Q Consensus       206 ~~~~~~~~~~~~~~~~E~~~~~Wv~~eel~~~~~~~~~  243 (275)
                      .+...  ...  ....|..+++|++++++.+++++...
T Consensus        87 ~~~~~--~~~--~~~~e~~~~~Wv~~~el~~~~~~~~~  120 (312)
T PRK08999         87 RVTAW--QGE--PHGREGQPLAWVAPDELAVYPFPPAN  120 (312)
T ss_pred             EEEEe--cCc--ccCccCCccEEecHHHcccCCCCcch
Confidence            55432  112  23456778899999999998887653

>cd04665 Nudix_Hydrolase_8 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.63  E-value=6.4e-15  Score=114.60  Aligned_cols=100  Identities=24%  Similarity=0.275  Sum_probs=77.3

Q ss_pred             EEEEEEeCCceEEEEEEecCCCCCCCceeCcceeccCCCCHHHHHHHHHHHHhCCCcceeEEEEEEeeeccccceEEEEE
Q 039665          126 VGAFVMNNKRELLVVQENNGALKGTGVWKLPTGTIEEGEDICAAAVREVKEETGIDTEFVEVLAFRQSHRSFFRKSDLFF  205 (275)
Q Consensus       126 v~~vv~~~~~~vLLv~r~~~~~~~~~~w~lPgG~ve~gEs~~~aA~REl~EEtGl~~~~~~~l~~~~~~~~~~~~~~~~f  205 (275)
                      |.+++++ ++++||++++      .+.|++|||++++||++.+||+||++||||+.+..+..++.+...........++|
T Consensus         3 v~vi~~~-~~~vLl~~~~------~~~w~lPgG~ve~gE~~~~aa~REl~EE~G~~~~~~~~l~~~~~~~~~~~~~~~~y   75 (118)
T cd04665           3 VLVICFY-DDGLLLVRHK------DRGWEFPGGHVEPGETIEEAARREVWEETGAELGSLTLVGYYQVDLFESGFETLVY   75 (118)
T ss_pred             EEEEEEE-CCEEEEEEeC------CCEEECCccccCCCCCHHHHHHHHHHHHHCCccCceEEEEEEEecCCCCcEEEEEE
Confidence            5556666 4789999886      25799999999999999999999999999999998999987765554445566777


Q ss_pred             EEEEecCCccccCCccccceEEEEeHhhH
Q 039665          206 VCMLRPRNFHIQKQDSEIAAAQWMQAEDY  234 (275)
Q Consensus       206 ~~~~~~~~~~~~~~~~E~~~~~Wv~~eel  234 (275)
                      ++......  ......|+..+.|++.+..
T Consensus        76 ~a~~~~~~--~~~~~~E~~~~~~~~~~~~  102 (118)
T cd04665          76 PAVSAQLE--EKASYLETDGPVLFKNEPE  102 (118)
T ss_pred             EEEEEecc--cccccccccCcEEeccCCc
Confidence            77655322  2235688999999987654

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate s

>cd04662 Nudix_Hydrolase_5 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.63  E-value=8.5e-15  Score=114.44  Aligned_cols=105  Identities=24%  Similarity=0.307  Sum_probs=67.2

Q ss_pred             EEEEEEEe---CCceEEEEEEecCC--CCCCCceeCcceeccCCCCHHHHHHHHHHHHhCCCcceeEEEEEEeeeccccc
Q 039665          125 GVGAFVMN---NKRELLVVQENNGA--LKGTGVWKLPTGTIEEGEDICAAAVREVKEETGIDTEFVEVLAFRQSHRSFFR  199 (275)
Q Consensus       125 ~v~~vv~~---~~~~vLLv~r~~~~--~~~~~~w~lPgG~ve~gEs~~~aA~REl~EEtGl~~~~~~~l~~~~~~~~~~~  199 (275)
                      ++|+|+++   +..+|||++|....  ....+.|++|||+++.||++.+||+||++||||+.+. ..++..... ....+
T Consensus         2 ~~g~v~~~~~~~~~~vlL~~~~~~~~~~~~~~~W~lPgG~ie~~E~~~~aA~REl~EEtGl~~~-~~~~~l~~~-~~~~~   79 (126)
T cd04662           2 SAGILLYRFRDGRIEVLLVHPGGPFWANKDLGAWSIPKGEYTEGEDPLLAAKREFSEETGFCVD-GPFIDLGSL-KQSGG   79 (126)
T ss_pred             eEEEEEEEEcCCcEEEEEEEccCccccCCCCCEEECCcccCCCCcCHHHHHHHHHHHHhCCcce-eeEEeEEEE-ECCCC
Confidence            46677776   22469999874220  1246889999999999999999999999999999876 222222111 12223


Q ss_pred             eEEEEEEEEEec--------------CCccccCC-ccccceEEEEeH
Q 039665          200 KSDLFFVCMLRP--------------RNFHIQKQ-DSEIAAAQWMQA  231 (275)
Q Consensus       200 ~~~~~f~~~~~~--------------~~~~~~~~-~~E~~~~~Wv~~  231 (275)
                      ...++|++....              .+++.... .+|..+++|+++
T Consensus        80 ~~v~~fl~~~~~d~~~~~~~~f~~~~~~~~~~~~~~~e~~~~~w~~~  126 (126)
T cd04662          80 KVVHAWAVEADLDITDIKSNTFEMEWPKGSGKMRKFPEVDRAGWFDI  126 (126)
T ss_pred             eEEEEEEEEecCChhHeEEEEEEEEccCCCCccccCCccceeEeecC
Confidence            345555554321              12233333 578888999873

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate s

>cd04674 Nudix_Hydrolase_16 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.62  E-value=1.2e-14  Score=112.95  Aligned_cols=56  Identities=38%  Similarity=0.485  Sum_probs=44.1

Q ss_pred             EEEEEEeCCceEEEEEEecCCCCCCCceeCcceeccCCCCHHHHHHHHHHHHhCCCcce
Q 039665          126 VGAFVMNNKRELLVVQENNGALKGTGVWKLPTGTIEEGEDICAAAVREVKEETGIDTEF  184 (275)
Q Consensus       126 v~~vv~~~~~~vLLv~r~~~~~~~~~~w~lPgG~ve~gEs~~~aA~REl~EEtGl~~~~  184 (275)
                      +++++...+ .+||++|...+  ..+.|.||||++++||++.+||.||++||||+++..
T Consensus         7 av~vl~~~~-~~lL~~r~~~~--~~~~w~lPgG~ve~~E~~~~aa~REl~EE~g~~~~~   62 (118)
T cd04674           7 VVALLPVDD-GLLVIRRGIEP--GRGKLALPGGFIELGETWQDAVARELLEETGVAVDP   62 (118)
T ss_pred             EEEEEEECC-CEEEEEeecCC--CCCeEECCceecCCCCCHHHHHHHHHHHHHCCcccc
Confidence            334444444 47777776443  578999999999999999999999999999998763

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate

>PLN02709 nudix hydrolase

Probab=99.59  E-value=2e-14  Score=122.53  Aligned_cols=104  Identities=19%  Similarity=0.249  Sum_probs=83.6

Q ss_pred             ceEEEEEEecCCCCCCCceeCcceeccCC-CCHHHHHHHHHHHHhCCCcceeEEEEEEeeeccccceEEEEEEEEEec-C
Q 039665          135 RELLVVQENNGALKGTGVWKLPTGTIEEG-EDICAAAVREVKEETGIDTEFVEVLAFRQSHRSFFRKSDLFFVCMLRP-R  212 (275)
Q Consensus       135 ~~vLLv~r~~~~~~~~~~w~lPgG~ve~g-Es~~~aA~REl~EEtGl~~~~~~~l~~~~~~~~~~~~~~~~f~~~~~~-~  212 (275)
                      .+|||++|.......+|.|.||||++|++ +++.+||+||++||+|+.....++++.........+....-|++.+.. .
T Consensus        51 ~~vLl~~Rs~~l~~h~GqiafPGG~~e~~D~~~~~tAlRE~~EEiGl~~~~v~vlg~L~~~~t~sg~~V~P~V~~~~~~~  130 (222)
T PLN02709         51 LRVILTKRSSTLSSHPGEVALPGGKRDEEDKDDIATALREAREEIGLDPSLVTIISVLEPFVNKKGMSVAPVIGFLHDKK  130 (222)
T ss_pred             eEEEEEEcCCCCCCCCCCccCCCcccCCCCCCHHHHHHHHHHHHHCCCchheEEeeecCCeECCCCCEEEEEEEEecCCC
Confidence            47999999876545789999999999997 478999999999999999998999988776665556666667766643 1


Q ss_pred             CccccCCccccceEEEEeHhhHhcCC
Q 039665          213 NFHIQKQDSEIAAAQWMQAEDYAAQP  238 (275)
Q Consensus       213 ~~~~~~~~~E~~~~~Wv~~eel~~~~  238 (275)
                      .....++++|+.++.|+|+++|.+..
T Consensus       131 ~~~~~~np~EV~~vf~vPL~~ll~~~  156 (222)
T PLN02709        131 AFKPLPNPAEVEEIFDVPLEMFLKDK  156 (222)
T ss_pred             CccccCChhhhheeEEecHHHHhCCc
Confidence            23444678899999999999998754

>COG2816 NPY1 NTP pyrophosphohydrolases containing a Zn-finger, probably nucleic-acid-binding [DNA replication, recombination, and repair]

Probab=99.59  E-value=3.4e-15  Score=129.94  Aligned_cols=129  Identities=21%  Similarity=0.262  Sum_probs=96.0

Q ss_pred             CCCcceeEEEEEEEeCCceEEEEEEecCCCCCCCceeCcceeccCCCCHHHHHHHHHHHHhCCCcceeEEEEEEeeeccc
Q 039665          118 ANASHRVGVGAFVMNNKRELLVVQENNGALKGTGVWKLPTGTIEEGEDICAAAVREVKEETGIDTEFVEVLAFRQSHRSF  197 (275)
Q Consensus       118 ~~~~~~v~v~~vv~~~~~~vLLv~r~~~~~~~~~~w~lPgG~ve~gEs~~~aA~REl~EEtGl~~~~~~~l~~~~~~~~~  197 (275)
                      .+++.-.+|.++|.+.+ ++||.++.++.   +|.+.+-+|.||+|||+++|++||++||+|++++.+.+++...+.+..
T Consensus       139 ~fPR~dP~vIv~v~~~~-~ilLa~~~~h~---~g~yS~LAGFVE~GETlE~AV~REv~EE~Gi~V~~vrY~~SQPWPfP~  214 (279)
T COG2816         139 HFPRIDPCVIVAVIRGD-EILLARHPRHF---PGMYSLLAGFVEPGETLEQAVAREVFEEVGIKVKNVRYVGSQPWPFPH  214 (279)
T ss_pred             cCCCCCCeEEEEEecCC-ceeecCCCCCC---CcceeeeeecccCCccHHHHHHHHHHHhhCeEEeeeeEEeccCCCCch
Confidence            34455556666666654 48888887653   799999999999999999999999999999999999999877765543


Q ss_pred             cceEEEEEEEEEecCCccccCCccccceEEEEeHhh-HhcCCCc--ccchHHHHHHHHHH
Q 039665          198 FRKSDLFFVCMLRPRNFHIQKQDSEIAAAQWMQAED-YAAQPYV--LKHQMFNYICQICL  254 (275)
Q Consensus       198 ~~~~~~~f~~~~~~~~~~~~~~~~E~~~~~Wv~~ee-l~~~~~~--~~~~~~~~~~~~~~  254 (275)
                        ..++-|.+.+  .+++++.+..|+.+++|++.+| +..++-.  ..+.++...+..+-
T Consensus       215 --SLMigf~aey--~sgeI~~d~~Eleda~WFs~~evl~~L~~~~~~~~~li~~~~~~ia  270 (279)
T COG2816         215 --SLMLGFMAEY--DSGEITPDEGELEDARWFSRDEVLPALPPDGTIARRLIEPTLAAIA  270 (279)
T ss_pred             --hhhhhheeee--ccccccCCcchhhhccccCHhHHhhhcCCCCCcccccccchHHHHH
Confidence              4445566644  4567888899999999999999 5666542  33344444444333

>PLN02552 isopentenyl-diphosphate delta-isomerase

Probab=99.58  E-value=2.6e-14  Score=124.27  Aligned_cols=136  Identities=22%  Similarity=0.256  Sum_probs=90.5

Q ss_pred             CCCCcceeEEEEEEEeCCceEEEEEEecCCCCCCCceeCc-ceeccCCCC-----------------HHHHHHHHHHHHh
Q 039665          117 PANASHRVGVGAFVMNNKRELLVVQENNGALKGTGVWKLP-TGTIEEGED-----------------ICAAAVREVKEET  178 (275)
Q Consensus       117 p~~~~~~v~v~~vv~~~~~~vLLv~r~~~~~~~~~~w~lP-gG~ve~gEs-----------------~~~aA~REl~EEt  178 (275)
                      +.+..|+. +.++|+|.+|++||+||...+...+|.|+.. +|++..||+                 ..+||+|||+|||
T Consensus        51 ~~gl~Hra-~~v~i~n~~g~lLLQkRs~~K~~~Pg~Wd~s~~GHp~~ge~~~e~~~e~~~~~~~~~~~~eAA~REL~EEl  129 (247)
T PLN02552         51 PRGLLHRA-FSVFLFNSKYELLLQQRAATKVTFPLVWTNTCCSHPLYGQDPNEVDRESELIDGNVLGVKNAAQRKLLHEL  129 (247)
T ss_pred             CCCceEEE-EEEEEEcCCCeEEEEEecCCCCCCCcceecccCCccccccccccccccccccccchhhHHHHHHhHHHHHh
Confidence            34445664 7789999999999999998888889999776 455554422                 6789999999999


Q ss_pred             CCCcce-----eEEEEEEeeecccc-----------ceEEEEEEEEEecCCccccCCccccceEEEEeHhhHhcCCCcc-
Q 039665          179 GIDTEF-----VEVLAFRQSHRSFF-----------RKSDLFFVCMLRPRNFHIQKQDSEIAAAQWMQAEDYAAQPYVL-  241 (275)
Q Consensus       179 Gl~~~~-----~~~l~~~~~~~~~~-----------~~~~~~f~~~~~~~~~~~~~~~~E~~~~~Wv~~eel~~~~~~~-  241 (275)
                      ||.+..     +.+++.+.......           ...+++|+. ......++.++++|+.+++|++++|+.++.... 
T Consensus       130 GI~~~~~~~~~l~~~~~~~y~~~~~~~~~~~~~~~E~e~~~v~~~-~~~~~~~l~lq~eEV~~~~wvs~~el~~~~~~~~  208 (247)
T PLN02552        130 GIPAEDVPVDQFTFLTRLHYKAADDVTHGPDGKWGEHELDYLLFI-RPVRDVKVNPNPDEVADVKYVNREELKEMMRKES  208 (247)
T ss_pred             CCCccccccccceeeeEEEEecccccccccCCCccceEEEEEEEE-EecCCCcccCCHHHhheEEEEeHHHHHHHHhhcC
Confidence            998643     44454332222111           123333332 222234677888999999999999999874311 


Q ss_pred             ---cchHHHHHHHHHH
Q 039665          242 ---KHQMFNYICQICL  254 (275)
Q Consensus       242 ---~~~~~~~~~~~~~  254 (275)
                         -.+.++.+++.++
T Consensus       209 ~~~~tpw~~~~~~~~l  224 (247)
T PLN02552        209 GLKLSPWFRLIVDNFL  224 (247)
T ss_pred             CcccCHHHHHHHHHHH
Confidence               1335666665554

>cd04663 Nudix_Hydrolase_6 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.54  E-value=1e-13  Score=108.71  Aligned_cols=106  Identities=23%  Similarity=0.316  Sum_probs=62.6

Q ss_pred             EEEEEEeCCc--eEEEEEEecCCCCCCCceeCcceeccCCCCHHHHHHHHHHHHhCCCcceeE-EEEEEeeeccccceEE
Q 039665          126 VGAFVMNNKR--ELLVVQENNGALKGTGVWKLPTGTIEEGEDICAAAVREVKEETGIDTEFVE-VLAFRQSHRSFFRKSD  202 (275)
Q Consensus       126 v~~vv~~~~~--~vLLv~r~~~~~~~~~~w~lPgG~ve~gEs~~~aA~REl~EEtGl~~~~~~-~l~~~~~~~~~~~~~~  202 (275)
                      |.+++.+.++  +||+.+..     . +.|+||||.+++||++.+||+||++||||+.+.... .++.........+...
T Consensus         3 ~~~~~~~~~~~~~ll~~r~~-----~-~~~~lPgG~ve~~E~~~~aa~Rel~EEtGl~~~~~~~~~~~~~~~~~~~~~~~   76 (126)
T cd04663           3 CPAVLRRNGEVLELLVFEHP-----L-AGFQIVKGTVEPGETPEAAALRELQEESGLPSFLSDYILHVWERRFYQKRHFW   76 (126)
T ss_pred             EEEEEEeCCceEEEEEEEcC-----C-CcEECCCccCCCCCCHHHHHHHHHHHHHCCeeeeeeecceeeeCCEeeccEEE
Confidence            4456666544  56665543     1 459999999999999999999999999999872221 1222221111123344


Q ss_pred             EEEEEEEec---CCc--cccCCccccceEEEEeHhhHhcC
Q 039665          203 LFFVCMLRP---RNF--HIQKQDSEIAAAQWMQAEDYAAQ  237 (275)
Q Consensus       203 ~~f~~~~~~---~~~--~~~~~~~E~~~~~Wv~~eel~~~  237 (275)
                      +++++....   ...  ....++.+...+.|++++++...
T Consensus        77 ~l~~~~~~~~~~~~~~~~~~~~E~~~i~~~Wv~l~~~~~~  116 (126)
T cd04663          77 HLTLCEVDQDLPDSWVHFVQDDGGHEFRFFWVDLASCLDE  116 (126)
T ss_pred             EEEEEEecCCCcccccCcccCCCCceEEEEEEcccccccc
Confidence            445454421   111  11222334445669999998543

Enzymes belong to this superfamily requires a divalent cation, such as Mg2+ or Mn2+ for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, U=I, L or V) which functions as metal binding and catalytic site. Substrates of nudix hydrolase include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate specificity are

>KOG3084 consensus NADH pyrophosphatase I of the Nudix family of hydrolases [Replication, recombination and repair]

Probab=99.51  E-value=4.3e-15  Score=129.70  Aligned_cols=110  Identities=25%  Similarity=0.347  Sum_probs=79.1

Q ss_pred             ceeEEEEEEEeCCc-eEEEEEEecCCCCCCCceeCcceeccCCCCHHHHHHHHHHHHhCCCcceeEEEEEEeeeccccce
Q 039665          122 HRVGVGAFVMNNKR-ELLVVQENNGALKGTGVWKLPTGTIEEGEDICAAAVREVKEETGIDTEFVEVLAFRQSHRSFFRK  200 (275)
Q Consensus       122 ~~v~v~~vv~~~~~-~vLLv~r~~~~~~~~~~w~lPgG~ve~gEs~~~aA~REl~EEtGl~~~~~~~l~~~~~~~~~~~~  200 (275)
                      .-..|..++++.++ +.||.|+++ +  .+|+|..++|.+|+||++++||+||++||||++++.+.+.....+.  .+..
T Consensus       186 ~dPvVIm~li~~d~~~~LL~R~~r-~--~~gl~t~lAGFlEpGES~eeav~REtwEEtGi~V~~I~~~asQPWP--~~p~  260 (345)
T KOG3084|consen  186 TDPVVIMLLIDHDGKHALLGRQKR-Y--PPGLWTCLAGFLEPGESIEEAVRRETWEETGIEVEVISYVASQPWP--LMPQ  260 (345)
T ss_pred             CCCeEEEEEEcCCCCEeeeecccC-C--CCchhhhhhccCCccccHHHHHHHHHHHHhCceeeeEeeeecCCCC--CCch
Confidence            33456677788665 555555443 3  4689999999999999999999999999999999988876655443  1223


Q ss_pred             EEEEEEEEEecCCccccCCcc-ccceEEEEeHhhHhc
Q 039665          201 SDLFFVCMLRPRNFHIQKQDS-EIAAAQWMQAEDYAA  236 (275)
Q Consensus       201 ~~~~f~~~~~~~~~~~~~~~~-E~~~~~Wv~~eel~~  236 (275)
                      +.+++.+.+....+.++.+.+ |..+++|++.+|+.+
T Consensus       261 SLMIgc~ala~~~~~I~vd~dlEleDaqwF~r~ev~~  297 (345)
T KOG3084|consen  261 SLMIGCLALAKLNGKISVDKDLELEDAQWFDREEVKS  297 (345)
T ss_pred             HHHHHHHHHHhhCCccccCcchhhhhcccccHHHHHH
Confidence            323322222333367777776 999999999999864

>PLN02791 Nudix hydrolase homolog

Probab=99.47  E-value=3.8e-13  Score=132.57  Aligned_cols=116  Identities=23%  Similarity=0.338  Sum_probs=86.7

Q ss_pred             cceeEEEEEEEeC-CceEEEEEEecCCCCCCCceeC-cceeccCCCCHHHHHHHHHHHHhCCCcc--eeEEEEEEee---
Q 039665          121 SHRVGVGAFVMNN-KRELLVVQENNGALKGTGVWKL-PTGTIEEGEDICAAAVREVKEETGIDTE--FVEVLAFRQS---  193 (275)
Q Consensus       121 ~~~v~v~~vv~~~-~~~vLLv~r~~~~~~~~~~w~l-PgG~ve~gEs~~~aA~REl~EEtGl~~~--~~~~l~~~~~---  193 (275)
                      .|+ ++.++|+|. +++|||+||...+...+|.|++ |||+++.||+..+||+||++||+||.+.  .+..++.+..   
T Consensus        31 ~Hr-AvhVwIfn~~~gelLLQkRS~~K~~~PG~WDiS~gGHv~aGEs~~eAA~REL~EELGI~l~~~~l~~l~~~~~~~~  109 (770)
T PLN02791         31 YHR-AVHVWIYSESTQELLLQRRADCKDSWPGQWDISSAGHISAGDTSLLSAQRELEEELGIILPKDAFELLFVFLQECV  109 (770)
T ss_pred             ceE-EEEEEEEECCCCeEEEEEecCCCCCCCCcccCcCCCCCCCCCCHHHHHHHHHHHHhCCCCChhheeeeeeEEEEee
Confidence            455 477889995 6899999999888889999999 7999999999999999999999999853  3445554321   


Q ss_pred             -eccc--cceEEEEEEEEEecC--CccccCCccccceEEEEeHhhHhcC
Q 039665          194 -HRSF--FRKSDLFFVCMLRPR--NFHIQKQDSEIAAAQWMQAEDYAAQ  237 (275)
Q Consensus       194 -~~~~--~~~~~~~f~~~~~~~--~~~~~~~~~E~~~~~Wv~~eel~~~  237 (275)
                       ....  .+...++|++.....  ..++.++++|+.+++|++++|+.++
T Consensus       110 ~~~g~~~e~E~~~VYlv~~~~~~p~~~~~lq~eEV~~v~wvsl~El~~~  158 (770)
T PLN02791        110 INDGKFINNEYNDVYLVTTLDPIPLEAFTLQESEVSAVKYMSIEEYKSA  158 (770)
T ss_pred             ccCCCcceeeEEEEEEEEECCCCCcccCCCChhhhheeEEEcHHHHHHH
Confidence             1111  124456666643211  1246678899999999999999855

>cd03670 ADPRase_NUDT9 ADP-ribose pyrophosphatase (ADPRase) catalyzes the hydrolysis of ADP-ribose to AMP and ribose-5-P

Probab=99.44  E-value=1.9e-12  Score=108.02  Aligned_cols=52  Identities=25%  Similarity=0.464  Sum_probs=41.6

Q ss_pred             EEEEEEeCC---ceEEEEEEecCCCCCCCceeCcceeccCCCCHHHHHHHHHHHHhCCCc
Q 039665          126 VGAFVMNNK---RELLVVQENNGALKGTGVWKLPTGTIEEGEDICAAAVREVKEETGIDT  182 (275)
Q Consensus       126 v~~vv~~~~---~~vLLv~r~~~~~~~~~~w~lPgG~ve~gEs~~~aA~REl~EEtGl~~  182 (275)
                      .++++.+..   -+||+++|.     ..+.|.||||++++||++.+||+||++||||+.+
T Consensus        37 ~~~i~~~~~~~~l~vLl~~r~-----~~g~walPGG~v~~~E~~~~aa~Rel~EEt~l~l   91 (186)
T cd03670          37 DGSIHPKSGKPILQFVAIKRP-----DSGEWAIPGGMVDPGEKISATLKREFGEEALNSL   91 (186)
T ss_pred             CEEEEecCCCCeeEEEEEEeC-----CCCcCcCCeeeccCCCCHHHHHHHHHHHHHcccc
Confidence            344555532   368888886     3588999999999999999999999999997653

Like other members of the Nudix hydrolase superfamily of enzymes, it is thought to require a divalent cation, such as Mg2+, for its activity. It also contains a 23-residue Nudix motif (GX5EX7REUXEEXGU, where U = I, L or V) which functions as a metal binding site/catalytic site. In addition to the Nudix motif, there are additional conserved amino acid residues, distal from the signature sequence, that correlate with substrate specificity. In humans, there are four distinct ADPRase activities, three putative cytosolic (ADPRase-I, -II, and -Mn) and a single mitochondrial enzyme (ADPRase-m). ADPRase-m is also known as NUDT9. It can be distinugished from the cytosolic ADPRase by a N-terminal target sequence unique to mitochondrial ADPRase. NUDT9 functions as a monomer.

>KOG2839 consensus Diadenosine and diphosphoinositol polyphosphate phosphohydrolase [Signal transduction mechanisms]

Probab=99.40  E-value=1.2e-12  Score=102.63  Aligned_cols=128  Identities=21%  Similarity=0.300  Sum_probs=82.5

Q ss_pred             ceeEEEEEEEeCC-c--eEEEEEEecCCCCCCCceeCcceeccCCCCHHHHHHHHHHHHhCCCcceeEEEEEEeeeccc-
Q 039665          122 HRVGVGAFVMNNK-R--ELLVVQENNGALKGTGVWKLPTGTIEEGEDICAAAVREVKEETGIDTEFVEVLAFRQSHRSF-  197 (275)
Q Consensus       122 ~~v~v~~vv~~~~-~--~vLLv~r~~~~~~~~~~w~lPgG~ve~gEs~~~aA~REl~EEtGl~~~~~~~l~~~~~~~~~-  197 (275)
                      .+..+++|++..+ .  +|||+.-.++    +..|-+|+|++|++|+..+||+||++||.|+......+++.+...... 
T Consensus         8 ~r~vagCi~~r~~~~~ieVLlvsSs~~----~~~wi~PKGGwE~dE~~~eAA~REt~EEAGv~G~l~~~~~g~~~~~~~~   83 (145)
T KOG2839|consen    8 FRLVAGCICYRSDKEKIEVLLVSSSKK----PHRWIVPKGGWEPDESVEEAALRETWEEAGVKGKLGRLLGGFEDFLSKK   83 (145)
T ss_pred             cEEEEEeeeeeecCcceEEEEEecCCC----CCCccCCCCCCCCCCCHHHHHHHHHHHHhCceeeeeccccchhhccChh
Confidence            3455777787733 3  8999998753    467999999999999999999999999999998888855544422221 


Q ss_pred             -cce-EEEEEEEEEecCCccccCCccccceEEEEeHhhHhcCCCcccchHHHHHHHHHHhh
Q 039665          198 -FRK-SDLFFVCMLRPRNFHIQKQDSEIAAAQWMQAEDYAAQPYVLKHQMFNYICQICLTK  256 (275)
Q Consensus       198 -~~~-~~~~f~~~~~~~~~~~~~~~~E~~~~~Wv~~eel~~~~~~~~~~~~~~~~~~~~~~  256 (275)
                       .+. ..+.|.......-....-...|..+.+|+.++|..+...   +..++..+..+++.
T Consensus        84 ~~~~~k~~~~~l~v~e~le~wp~~~~~~r~r~W~~ledA~~~~~---~~~m~~al~e~~~~  141 (145)
T KOG2839|consen   84 HRTKPKGVMYVLAVTEELEDWPESEHEFREREWLKLEDAIELCQ---HKWMKAALEEFLQF  141 (145)
T ss_pred             hcccccceeehhhhhhhcccChhhhcccceeEEeeHHHHHHHHh---hHHHHHHHHHHHHH
Confidence             111 112222222111111111234688999999999887644   33455555554443

>COG0494 MutT NTP pyrophosphohydrolases including oxidative damage repair enzymes [DNA replication, recombination, and repair / General function prediction only]

Probab=99.40  E-value=6.6e-12  Score=99.17  Aligned_cols=112  Identities=28%  Similarity=0.468  Sum_probs=72.1

Q ss_pred             EEEEEEeCC-ceEEEEEEecCCCCCCCceeCcceeccCCCCHHH-HHHHHHHHHhCCCcc--eeEEEEEEeeeccccc--
Q 039665          126 VGAFVMNNK-RELLVVQENNGALKGTGVWKLPTGTIEEGEDICA-AAVREVKEETGIDTE--FVEVLAFRQSHRSFFR--  199 (275)
Q Consensus       126 v~~vv~~~~-~~vLLv~r~~~~~~~~~~w~lPgG~ve~gEs~~~-aA~REl~EEtGl~~~--~~~~l~~~~~~~~~~~--  199 (275)
                      +.+++.... +++|++++....    +.|.||||++++||++.+ ||+||++||||+.+.  ....++.+........  
T Consensus        14 ~~~~~~~~~~~~vl~~~~~~~~----~~~~~PgG~ve~~e~~~~~aa~RE~~EEtGl~~~~~~~~~~~~~~~~~~~~~~~   89 (161)
T COG0494          14 VAVLVGRDGPGEVLLAQRRDDG----GLWELPGGKVEPGEELPEEAAARELEEETGLRVKDERLELLGEFPPSPGDGSSV   89 (161)
T ss_pred             EEEEEecCCCCEEeEEEccccC----CceecCCcccCCCCchHHHHHHHHHHHHhCCeeeeecceeeeeccCcccCcccc
Confidence            334444433 788998887432    699999999999999888 999999999999988  5666665554443321  


Q ss_pred             --eE-EEEEEEEEecCC-ccccCC---ccccceEEEEeHhhHhcCCCcc
Q 039665          200 --KS-DLFFVCMLRPRN-FHIQKQ---DSEIAAAQWMQAEDYAAQPYVL  241 (275)
Q Consensus       200 --~~-~~~f~~~~~~~~-~~~~~~---~~E~~~~~Wv~~eel~~~~~~~  241 (275)
                        .. ..++.+...... ..+...   ..|...+.|++++++.......
T Consensus        90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~  138 (161)
T COG0494          90 GGREHRVFFVAEVDDSLAVAIEGLSAPSEELEDLEWVPLDELAALVLAE  138 (161)
T ss_pred             cceEEEEEEeeeccccccccccccCCCcchhhceeeeeHHHcccccccc
Confidence              11 122222211111 111111   2578899999999988875543

>KOG3041 consensus Nucleoside diphosphate-sugar hydrolase of the MutT (NUDIX) family [Replication, recombination and repair]

Probab=99.32  E-value=2.4e-11  Score=99.62  Aligned_cols=101  Identities=24%  Similarity=0.289  Sum_probs=70.8

Q ss_pred             CceEEEEEEecCCCCCCCceeCcceeccCCCCHHHHHHHHHHHHhCCCccee--EEEEEEeeeccccceEEEEEEEEEec
Q 039665          134 KRELLVVQENNGALKGTGVWKLPTGTIEEGEDICAAAVREVKEETGIDTEFV--EVLAFRQSHRSFFRKSDLFFVCMLRP  211 (275)
Q Consensus       134 ~~~vLLv~r~~~~~~~~~~w~lPgG~ve~gEs~~~aA~REl~EEtGl~~~~~--~~l~~~~~~~~~~~~~~~~f~~~~~~  211 (275)
                      .-.++|++|.|.+. ++-..+||+|.+|.||++..||+|||+||||+.-...  ....+..+  +..+......++.++.
T Consensus        87 ~~~ivL~kQfRpP~-Gk~ciElPAGLiD~ge~~~~aAiREl~EEtGy~gkv~~~s~~~f~DP--Gltn~~~~iv~v~idg  163 (225)
T KOG3041|consen   87 KPYIVLVKQFRPPT-GKICIELPAGLIDDGEDFEGAAIRELEEETGYKGKVDMVSPTVFLDP--GLTNCNLCIVVVDIDG  163 (225)
T ss_pred             cEEEEEEEeecCCC-CcEEEEcccccccCCCchHHHHHHHHHHHhCccceeeeccccEEcCC--CCCCCceEEEEEEecC
Confidence            34699999997764 8889999999999999999999999999999984333  23334444  3333333333333332


Q ss_pred             C---Cc--cccCCccccceEEEEeHhhHhcC
Q 039665          212 R---NF--HIQKQDSEIAAAQWMQAEDYAAQ  237 (275)
Q Consensus       212 ~---~~--~~~~~~~E~~~~~Wv~~eel~~~  237 (275)
                      .   ..  ...+++.|..++.-+++.+|.+.
T Consensus       164 ~~pEnqrp~q~ledgEfIev~~i~~~~L~~~  194 (225)
T KOG3041|consen  164 DVPENQRPVQQLEDGEFIEVFLIPLSELWRE  194 (225)
T ss_pred             CCccccCccccCCCCceEEEEEeeHHHHHHH
Confidence            1   11  22345679999999999988754

>cd03431 DNA_Glycosylase_C DNA glycosylase (MutY in bacteria and hMYH in humans) is responsible for repairing misread A*oxoG residues to C*G by removing the inappropriately paired adenine base from the DNA backbone

Probab=99.29  E-value=7.7e-11  Score=90.66  Aligned_cols=104  Identities=18%  Similarity=0.268  Sum_probs=76.7

Q ss_pred             EEEEeCCceEEEEEEecCCCCCCCceeCcceeccCCCCHHHHHHHHHHHHhCCCcceeEEEEEEeeeccccceEEEEEEE
Q 039665          128 AFVMNNKRELLVVQENNGALKGTGVWKLPTGTIEEGEDICAAAVREVKEETGIDTEFVEVLAFRQSHRSFFRKSDLFFVC  207 (275)
Q Consensus       128 ~vv~~~~~~vLLv~r~~~~~~~~~~w~lPgG~ve~gEs~~~aA~REl~EEtGl~~~~~~~l~~~~~~~~~~~~~~~~f~~  207 (275)
                      ++++..++++||.||...+. ++|+|+||+|.++.+|+..++..||+.||.++   ....++.+.+.++++.....+|.|
T Consensus         7 ~~ii~~~~~~ll~kR~~~gl-~~glwefP~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~H~fth~~~~~~~~~~   82 (118)
T cd03431           7 VVVIRNDGRVLLEKRPEKGL-LAGLWEFPSVEWEEEADGEEALLSALKKALRL---SLEPLGTVKHTFTHFRLTLHVYLA   82 (118)
T ss_pred             EEEEecCCeEEEEECCCCCC-CCcceeCCCccccCCcCHHHHHHHHHHHHhCc---ccccceeEEEecCCeEEEEEEEEE
Confidence            34445578999999976554 78999999999999999999999999998775   233355666767776666677776


Q ss_pred             EEecCCccccCCccccceEEEEeHhhHhcCCCccc
Q 039665          208 MLRPRNFHIQKQDSEIAAAQWMQAEDYAAQPYVLK  242 (275)
Q Consensus       208 ~~~~~~~~~~~~~~E~~~~~Wv~~eel~~~~~~~~  242 (275)
                      .....  .     .+..++.|++++++..++++..
T Consensus        83 ~~~~~--~-----~~~~~~~W~~~eel~~~~~p~~  110 (118)
T cd03431          83 RLEGD--L-----LAPDEGRWVPLEELDEYALPTV  110 (118)
T ss_pred             EEeCC--C-----cCccccEEccHHHHhhCCCCHH
Confidence            55321  1     2345679999999999877643

It belongs to the Nudix hydrolase superfamily and is important for the repair of various genotoxic lesions. Enzymes belonging to this superfamily requires a divalent cation, such as Mg2+ or Mn2+ for their activity. They are also recognized by a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V). However, DNA glycosylase does not seem to contain this signature motif. DNA glycosylase consists of 2 domains: the N-terminal domain contains the catalytic properties of the enzyme and the C-terminal domain affects substrate (oxoG) binding and enzymatic turnover. The C-terminal domain is highly similar to MutT, based on secondary structure and topology, despite low sequence identity. MutT sanitizes the nucleotide precursor pool by hydrolyzing oxo-dGTP to

>KOG3069 consensus Peroxisomal NUDIX hydrolase [Replication, recombination and repair]

Probab=99.11  E-value=3.4e-10  Score=95.61  Aligned_cols=116  Identities=20%  Similarity=0.216  Sum_probs=83.9

Q ss_pred             EEEEEEEeC-C--ceEEEEEEecCCCCCCCceeCcceeccCCC-CHHHHHHHHHHHHhCCCcceeEEEEEEeeeccccce
Q 039665          125 GVGAFVMNN-K--RELLVVQENNGALKGTGVWKLPTGTIEEGE-DICAAAVREVKEETGIDTEFVEVLAFRQSHRSFFRK  200 (275)
Q Consensus       125 ~v~~vv~~~-~--~~vLLv~r~~~~~~~~~~w~lPgG~ve~gE-s~~~aA~REl~EEtGl~~~~~~~l~~~~~~~~~~~~  200 (275)
                      +|.+.+++. +  -+|||.||.+.-...+|.-.||||..|+.+ +-..+|.||.+||.|++.+...+++.........+.
T Consensus        45 aVlI~L~~~~~~~l~vLltkRSr~LrshsGev~fPGG~~d~~D~s~~~tAlREt~EEIGl~~~~~~~~g~l~~~~~r~~~  124 (246)
T KOG3069|consen   45 AVLIPLVQVGSGELSVLLTKRSRTLRSHSGEVCFPGGRRDPHDKSDIQTALRETEEEIGLDPELVDVLGALPPFVLRSGW  124 (246)
T ss_pred             cEEEEEEEcCCCceEEEEEeccccccccCCceeCCCCcCCccccchHHHHHHHHHHHhCCCHHHhhhhhhccceeeccCc
Confidence            344444553 2  479999998877778899999999999864 677899999999999999888888766655444333


Q ss_pred             EEEEEEEEEecCC--ccccCCccccceEEEEeHhhHhcCCCc
Q 039665          201 SDLFFVCMLRPRN--FHIQKQDSEIAAAQWMQAEDYAAQPYV  240 (275)
Q Consensus       201 ~~~~f~~~~~~~~--~~~~~~~~E~~~~~Wv~~eel~~~~~~  240 (275)
                      ...-+++.+....  ....++..|...+.|+|++++..-...
T Consensus       125 ~v~p~v~~l~~~~~l~~~~ln~gEv~~~F~VPL~~ll~~~~~  166 (246)
T KOG3069|consen  125 SVFPVVGFLSDKKILPSLRLNSGEVESAFWVPLTDLLLPKHQ  166 (246)
T ss_pred             ccceeEEEEecccccccccCCchheeeeeeeeHHHHhhhhcc
Confidence            3333333332221  345667899999999999999865433

>COG1443 Idi Isopentenyldiphosphate isomerase [Lipid metabolism]

Probab=99.08  E-value=6.4e-10  Score=89.87  Aligned_cols=115  Identities=19%  Similarity=0.261  Sum_probs=86.1

Q ss_pred             EEEEEEEeCCceEEEEEEecCCCCCCCceeCc-ceeccCCCCHHHHHHHHHHHHhCCCccee---EEEEEEe---eeccc
Q 039665          125 GVGAFVMNNKRELLVVQENNGALKGTGVWKLP-TGTIEEGEDICAAAVREVKEETGIDTEFV---EVLAFRQ---SHRSF  197 (275)
Q Consensus       125 ~v~~vv~~~~~~vLLv~r~~~~~~~~~~w~lP-gG~ve~gEs~~~aA~REl~EEtGl~~~~~---~~l~~~~---~~~~~  197 (275)
                      +..++++|.+|++||.||...+..+++.|.-- .||--+||+..+||+|-+.+|+||+....   +++..+.   .....
T Consensus        35 AFS~~lFne~g~LLltrRA~~K~twP~vWTNSvCsHP~~~es~~~A~~rRl~~ELGie~~~~d~~~il~rf~YrA~~~~~  114 (185)
T COG1443          35 AFSSFLFNERGQLLLTRRALSKKTWPGVWTNSVCSHPLPGESNEDAARRRLAYELGIEPDQYDKLEILPRFRYRAADPDG  114 (185)
T ss_pred             hhheeEECCCCceeeehhhhhcccCcccccccccCCCcCCCchHHHHHHHHHHHhCCCCcccCccccccceEEeccCCCC
Confidence            46789999999999999988888899999775 68888999999999999999999998632   3332221   22222


Q ss_pred             cc--eEEEEEEEEEecCCccccCCccccceEEEEeHhhHhcCCCccc
Q 039665          198 FR--KSDLFFVCMLRPRNFHIQKQDSEIAAAQWMQAEDYAAQPYVLK  242 (275)
Q Consensus       198 ~~--~~~~~f~~~~~~~~~~~~~~~~E~~~~~Wv~~eel~~~~~~~~  242 (275)
                      ..  ..+.++.+++.  + .+.++++|..+++|++.+++.++.....
T Consensus       115 ~~E~Eic~V~~~~~~--~-~~~~npdEV~~~~wv~~e~l~~~~~~~~  158 (185)
T COG1443         115 IVENEICPVLAARLD--S-ALDPNPDEVMDYRWVSPEDLKEMVDATP  158 (185)
T ss_pred             cceeeeeeEEEEeec--C-CCCCChHHhhheeccCHHHHHHhhcCCc
Confidence            33  33344444443  3 5566789999999999999998865543

>PF14815 NUDIX_4: NUDIX domain; PDB: 1VRL_A 1RRQ_A 3G0Q_A 3FSQ_A 1RRS_A 3FSP_A

Probab=98.99  E-value=2.6e-09  Score=82.35  Aligned_cols=107  Identities=19%  Similarity=0.245  Sum_probs=70.6

Q ss_pred             EEEEeCCceEEEEEEecCCCCCCCceeCcceeccCCCCHHHHHHHHHHHHhCCCcceeEEEEEEeeeccccceEEEEEEE
Q 039665          128 AFVMNNKRELLVVQENNGALKGTGVWKLPTGTIEEGEDICAAAVREVKEETGIDTEFVEVLAFRQSHRSFFRKSDLFFVC  207 (275)
Q Consensus       128 ~vv~~~~~~vLLv~r~~~~~~~~~~w~lPgG~ve~gEs~~~aA~REl~EEtGl~~~~~~~l~~~~~~~~~~~~~~~~f~~  207 (275)
                      +++++.++++||.||...+. .+|+|+||.-..+. ++..+.+.+.+.+..|+.+.....++.+.+.++++.....+|.+
T Consensus         2 ~~i~~~~~~~Ll~kRp~~gl-l~GLwefP~~e~~~-~~~~~~l~~~~~~~~~~~~~~~~~~~~v~H~fSH~~~~~~~~~~   79 (114)
T PF14815_consen    2 LLIIRSQGRVLLEKRPEKGL-LAGLWEFPLIESDE-EDDEEELEEWLEEQLGLSIRSVEPLGTVKHVFSHRRWTIHVYEV   79 (114)
T ss_dssp             EEEEETTSEEEEEE--SSST-TTT-EE--EEE-SS-S-CHHHHHHHTCCSSS-EEEE-S-SEEEEEE-SSEEEEEEEEEE
T ss_pred             EEEEEeCCEEEEEECCCCCh-hhcCcccCEeCccC-CCCHHHHHHHHHHHcCCChhhheecCcEEEEccceEEEEEEEEE
Confidence            57888999999999987665 78999999988774 33355666667788898887777888888888888888888888


Q ss_pred             EEecCCccccCCccccceEEEEeHhhHhcCCCccc
Q 039665          208 MLRPRNFHIQKQDSEIAAAQWMQAEDYAAQPYVLK  242 (275)
Q Consensus       208 ~~~~~~~~~~~~~~E~~~~~Wv~~eel~~~~~~~~  242 (275)
                      .+......      +..+..|++++++.+++++..
T Consensus        80 ~~~~~~~~------~~~~~~W~~~~~l~~~~~p~~  108 (114)
T PF14815_consen   80 EVSADPPA------EPEEGQWVSLEELDQYPLPTP  108 (114)
T ss_dssp             EEE-SS----------TTEEEEEGGGGGGS---HH
T ss_pred             EecCCCCC------CCCCcEEEEHHHHhhCCCCHH
Confidence            76533211      456789999999999888654

>PLN02839 nudix hydrolase

Probab=98.79  E-value=3.9e-07  Score=82.76  Aligned_cols=173  Identities=17%  Similarity=0.199  Sum_probs=104.6

Q ss_pred             ChHHHHHHHHHHHHHHHHhCCeeEEEEccccccccchHHHhcCceeccCCCCeeeEEeecCCCcCCCCCCCcceeEEEEE
Q 039665           50 DSKVFSSRLRASLSLWRQQGKRGVWIKLPIELANLVEPAVQEGFRYHHAEPDYLMLVYWIPETADVLPANASHRVGVGAF  129 (275)
Q Consensus        50 ~~~~f~~~l~~~l~~w~~~~~~~vW~~~~~~~~~l~~~~~~~gf~~~~~~~~~~~l~~wl~~~~~~~p~~~~~~v~v~~v  129 (275)
                      ++++-.+.|..-+..|+.+|.-.=|   +.+   +.+..  .+|   . .+-++.+    .-....+-...+.-+.+.++
T Consensus       148 t~~~Rt~al~~v~~~lr~~g~~~gW---RnE---~y~V~--~~~---~-~~~l~~i----ERaA~~lfGi~tyGVHlNGy  211 (372)
T PLN02839        148 KPEDRTRAVADVIKILGDKGIIPGI---RNE---LYPVK--PSF---N-APVFFSL----ERAAAPYFGIKGYGVHMNGY  211 (372)
T ss_pred             CHHHHHHHHHHHHHHHHHcCCCCCc---ccC---ccccc--cCC---C-CcceEEE----eeccccccCceeEEEEEEEE
Confidence            5678888888888999988752223   211   11111  111   0 0111111    00011111122333444455


Q ss_pred             EEe-CCceEEEEEEecCCCCCCCceeC-cceeccCCCCHHHHHHHHHHHHhCCCcc---eeEEEEEEeeecc--ccceEE
Q 039665          130 VMN-NKRELLVVQENNGALKGTGVWKL-PTGTIEEGEDICAAAVREVKEETGIDTE---FVEVLAFRQSHRS--FFRKSD  202 (275)
Q Consensus       130 v~~-~~~~vLLv~r~~~~~~~~~~w~l-PgG~ve~gEs~~~aA~REl~EEtGl~~~---~~~~l~~~~~~~~--~~~~~~  202 (275)
                      +.. .+.++++.||...+...+|+|+- .+|++..||++.++++||.+||.||...   .....|.+.....  ..-...
T Consensus       212 v~~~g~~~lWV~RRS~tK~t~PGmLDn~VAGGi~aGesp~etliREa~EEAgLp~~l~~~~~~~G~VsY~~~~~~g~~~e  291 (372)
T PLN02839        212 VERDGQKFLWIGKRSLSKSTYPGMLDHLVAGGLPHGISCGENLVKECEEEAGISKAIADRAIAVGAVSYMDIDQYCFKRD  291 (372)
T ss_pred             EecCCCeEEEeeccCCCCCCCCChhhhccccCccCCCCHHHHHHHHHHHHcCCCHHHHhcceEeEEEEEEEEcCCccccC
Confidence            544 44679999999888889999965 5899999999999999999999999754   3344454433211  111334


Q ss_pred             EEEEEEEe-cCCccccCCccccceEEEEeHhhHhcCC
Q 039665          203 LFFVCMLR-PRNFHIQKQDSEIAAAQWMQAEDYAAQP  238 (275)
Q Consensus       203 ~~f~~~~~-~~~~~~~~~~~E~~~~~Wv~~eel~~~~  238 (275)
                      ..|++.+. +....+..++.|+.++.+++++|+.+..
T Consensus       292 vly~YDLeLP~df~P~~qDGEVe~F~Lm~v~EV~~~l  328 (372)
T PLN02839        292 VLFCYDLELPQDFVPKNQDGEVESFKLIPVAQVANVI  328 (372)
T ss_pred             EEEEeeeecCCccccCCCccceeEEEEecHHHHHHHH
Confidence            45555443 2223446678999999999999998543

>COG4119 Predicted NTP pyrophosphohydrolase [DNA replication, recombination, and repair / General function prediction only]

Probab=98.77  E-value=1e-07  Score=73.12  Aligned_cols=125  Identities=22%  Similarity=0.319  Sum_probs=79.1

Q ss_pred             EEEEEEEe-CCc--eEEEEEEecCCC---CCCCceeCcceeccCCCCHHHHHHHHHHHHhCCCcc-eeEEEEEEeeeccc
Q 039665          125 GVGAFVMN-NKR--ELLVVQENNGAL---KGTGVWKLPTGTIEEGEDICAAAVREVKEETGIDTE-FVEVLAFRQSHRSF  197 (275)
Q Consensus       125 ~v~~vv~~-~~~--~vLLv~r~~~~~---~~~~~w~lPgG~ve~gEs~~~aA~REl~EEtGl~~~-~~~~l~~~~~~~~~  197 (275)
                      +++++++. ..|  .|||+.-- +++   ...|.|.+|.|....||++..||+||..||+||.+. ....++....   .
T Consensus         5 SAGvLlYR~~aG~v~VLLvHPG-GPFWa~kD~GAWSIPKGey~~gEdp~~AArREf~EE~Gi~vdGP~~~lG~~kQ---~   80 (161)
T COG4119           5 SAGVLLYRARAGVVDVLLVHPG-GPFWAGKDDGAWSIPKGEYTGGEDPWLAARREFSEEIGICVDGPRIDLGSLKQ---S   80 (161)
T ss_pred             cceeEEEEecCCCEEEEEecCC-CCccccCCCCcccccccccCCCcCHHHHHHHHhhhhhceeecCchhhhhhhcc---C
Confidence            46777776 333  45555432 222   135789999999999999999999999999999773 2222332221   1


Q ss_pred             cceEEEEEE----------------EEEecCCccccCCccccceEEEEeHhhHhcCCCcccchHHHHHHHHHH
Q 039665          198 FRKSDLFFV----------------CMLRPRNFHIQKQDSEIAAAQWMQAEDYAAQPYVLKHQMFNYICQICL  254 (275)
Q Consensus       198 ~~~~~~~f~----------------~~~~~~~~~~~~~~~E~~~~~Wv~~eel~~~~~~~~~~~~~~~~~~~~  254 (275)
                      .++....|-                ..-.+.++..+ .-.|...+-|+++.|.........++++..+++...
T Consensus        81 GGKvVta~~veae~Dva~~rSntFe~eWPprSG~M~-~FPEVDRagWF~l~eAr~Kil~gQRpfldrL~a~~~  152 (161)
T COG4119          81 GGKVVTAFGVEAELDVADARSNTFELEWPPRSGKMR-KFPEVDRAGWFPLAEARTKILKGQRPFLDRLMAHAV  152 (161)
T ss_pred             CCcEEEEEeeeeeeehhhhhcceeeeecCCCCCccc-cCcccccccceecHHHHhHHhhccchHHHHHHHHhc
Confidence            122222222                22222333322 225788899999999988877777777777666543

>KOG0142 consensus Isopentenyl pyrophosphate:dimethylallyl pyrophosphate isomerase [Secondary metabolites biosynthesis, transport and catabolism]

Probab=98.20  E-value=4.3e-06  Score=69.24  Aligned_cols=131  Identities=21%  Similarity=0.349  Sum_probs=89.0

Q ss_pred             cceeEEEEEEEeCCceEEEEEEecCCCCCCCceeC-----c----ceecc-CCCCHHHHHHHHHHHHhCCCccee-----
Q 039665          121 SHRVGVGAFVMNNKRELLVVQENNGALKGTGVWKL-----P----TGTIE-EGEDICAAAVREVKEETGIDTEFV-----  185 (275)
Q Consensus       121 ~~~v~v~~vv~~~~~~vLLv~r~~~~~~~~~~w~l-----P----gG~ve-~gEs~~~aA~REl~EEtGl~~~~~-----  185 (275)
                      .|| +..++++|.++++||+||...+..+++.|.-     |    +...+ .+.....||+|-|.-|+||..+.+     
T Consensus        51 LHR-aFSVFlFns~~~lLlQqRS~~KitFP~~~TNtccSHPL~~~~el~~~d~lGVr~AAqRkL~~ELGIp~e~v~pee~  129 (225)
T KOG0142|consen   51 LHR-AFSVFLFNSKNELLLQQRSDEKITFPGLWTNTCCSHPLYNPGELEENDALGVRRAAQRKLKAELGIPLEEVPPEEF  129 (225)
T ss_pred             hhh-eeeEEEecCcchHHHhhhccccccccchhhhhhhcCcCCChhhhccCchHHHHHHHHHHHHHhhCCCccccCHHHc
Confidence            344 4678999999999999999888888888842     2    22111 123578899999999999986544     


Q ss_pred             EEEEEEee---eccccceEEEEEEEEEecCCccccCCccccceEEEEeHhhHhcCCCcccc---hHHHHHHHHH
Q 039665          186 EVLAFRQS---HRSFFRKSDLFFVCMLRPRNFHIQKQDSEIAAAQWMQAEDYAAQPYVLKH---QMFNYICQIC  253 (275)
Q Consensus       186 ~~l~~~~~---~~~~~~~~~~~f~~~~~~~~~~~~~~~~E~~~~~Wv~~eel~~~~~~~~~---~~~~~~~~~~  253 (275)
                      .+++.+++   ..+.++..-+-|+..+.. ...++++++|+.+++|++.+|+.++......   +.++.+.+.+
T Consensus       130 ~~ltrihYkA~sdg~wGEhEiDYiL~~~~-~~~~nPnpnEv~e~ryvs~eelkel~~~~~~~~TPWfkli~~~~  202 (225)
T KOG0142|consen  130 NFLTRIHYKAPSDGIWGEHEIDYILFLVK-DVTLNPNPNEVSEIRYVSREELKELVAKASAGFTPWFKLISENF  202 (225)
T ss_pred             ccceeeeeecCCCCCcccceeeEEEEEec-cCCCCCChhhhhHhheecHHHHHHHHhccccCCChHHHHHHHHH
Confidence            34544432   334466555555555443 3466777899999999999999887433222   4566655544

>COG4112 Predicted phosphoesterase (MutT family) [General function prediction only]

Probab=97.87  E-value=0.00019  Score=57.63  Aligned_cols=108  Identities=17%  Similarity=0.304  Sum_probs=71.9

Q ss_pred             EEEEeCCceEEEEEEecCCCC--CCCceeCc-ceeccCCC---CHHH----HHHHHHHHHhCCC---cceeEEEEEEeee
Q 039665          128 AFVMNNKRELLVVQENNGALK--GTGVWKLP-TGTIEEGE---DICA----AAVREVKEETGID---TEFVEVLAFRQSH  194 (275)
Q Consensus       128 ~vv~~~~~~vLLv~r~~~~~~--~~~~w~lP-gG~ve~gE---s~~~----aA~REl~EEtGl~---~~~~~~l~~~~~~  194 (275)
                      +++.+.+ +||+-.|-.++..  ..+.+.+- |||+..++   +..+    .+.|||.||.++.   ...+..+|.+...
T Consensus        66 vvi~~ed-evliyeRltgggE~RLHn~~SlG~GGHmn~~~GA~s~~evLk~n~~REleEEv~vseqd~q~~e~lGlINdd  144 (203)
T COG4112          66 VVIMDED-EVLIYERLTGGGEKRLHNLYSLGIGGHMNEGDGATSREEVLKGNLERELEEEVDVSEQDLQELEFLGLINDD  144 (203)
T ss_pred             EEEecCC-EEEEEEeccCcchhhhccccccccccccccCCCcccHHHHHccchHHHHHHHhCcCHHHhhhheeeeeecCC
Confidence            4556654 8999998754321  13556663 89998765   3322    2789999999998   5667888888766


Q ss_pred             ccccceEEEEEEEEEecCCccccCCccccceEEEEeHhhHhc
Q 039665          195 RSFFRKSDLFFVCMLRPRNFHIQKQDSEIAAAQWMQAEDYAA  236 (275)
Q Consensus       195 ~~~~~~~~~~f~~~~~~~~~~~~~~~~E~~~~~Wv~~eel~~  236 (275)
                      ....++.++-.+...+....+....+.+..+++|+.++++.+
T Consensus       145 ~neVgkVHiG~lf~~~~k~ndvevKEkd~~~~kwik~~ele~  186 (203)
T COG4112         145 TNEVGKVHIGALFLGRGKFNDVEVKEKDLFEWKWIKLEELEK  186 (203)
T ss_pred             CcccceEEEEEEEEeeccccceeeeecceeeeeeeeHHHHHH
Confidence            665555544333333333333444567788999999999988

>PRK10880 adenine DNA glycosylase; Provisional

Probab=97.69  E-value=0.00037  Score=63.99  Aligned_cols=104  Identities=13%  Similarity=0.111  Sum_probs=62.1

Q ss_pred             EEEEEEeCCceEEEEEEecCCCCCCCceeCcceeccCCCCHHHHHHHHHHHHhCCCcceeEEEEEEeeeccccceEEEEE
Q 039665          126 VGAFVMNNKRELLVVQENNGALKGTGVWKLPTGTIEEGEDICAAAVREVKEETGIDTEFVEVLAFRQSHRSFFRKSDLFF  205 (275)
Q Consensus       126 v~~vv~~~~~~vLLv~r~~~~~~~~~~w~lPgG~ve~gEs~~~aA~REl~EEtGl~~~~~~~l~~~~~~~~~~~~~~~~f  205 (275)
                      ..++++..++++||.||...+. ++|+|+||..  +. +    ...++..|+.|+.......++.+.+.++++....+.|
T Consensus       233 ~~~~~~~~~~~~~l~~r~~~gl-~~gl~~fP~~--~~-~----~~~~~~~~~~~~~~~~~~~~~~~~H~fTH~~~~~~~~  304 (350)
T PRK10880        233 GYFLLLQHGDEVWLEQRPPSGL-WGGLFCFPQF--AD-E----EELRQWLAQRGIAADNLTQLTAFRHTFSHFHLDIVPM  304 (350)
T ss_pred             EEEEEEEECCEEEEEECCccCh-hhccccCCCC--cc-h----hhHHHHHHhcCCchhhhcccCceEEEEeeEEEEEEEE
Confidence            3345555578899999986665 7899999963  21 1    1246666888876432223445555566555554455


Q ss_pred             EEEEecCCccccCCccccceEEEEeHhhHhcCCCccc
Q 039665          206 VCMLRPRNFHIQKQDSEIAAAQWMQAEDYAAQPYVLK  242 (275)
Q Consensus       206 ~~~~~~~~~~~~~~~~E~~~~~Wv~~eel~~~~~~~~  242 (275)
                      .+........   ..  ..+..|++++++..++++..
T Consensus       305 ~~~~~~~~~~---~~--~~~~~w~~~~~~~~~~~p~~  336 (350)
T PRK10880        305 WLPVSSFTGC---MD--EGNGLWYNLAQPPSVGLAAP  336 (350)
T ss_pred             EEEccccccc---cC--CcCCeEechHHhcccCCcHH
Confidence            4433211100   01  12346999999999988765

>KOG2937 consensus Decapping enzyme complex, predicted pyrophosphatase DCP2 [RNA processing and modification]

Probab=97.68  E-value=7.9e-06  Score=72.57  Aligned_cols=103  Identities=22%  Similarity=0.334  Sum_probs=67.8

Q ss_pred             EEEEEEEeCC-ceEEEEEEecCCCCCCCceeCcceeccCCCCHHHHHHHHHHHHhCCCcceeEE--EEEEeeeccccceE
Q 039665          125 GVGAFVMNNK-RELLVVQENNGALKGTGVWKLPTGTIEEGEDICAAAVREVKEETGIDTEFVEV--LAFRQSHRSFFRKS  201 (275)
Q Consensus       125 ~v~~vv~~~~-~~vLLv~r~~~~~~~~~~w~lPgG~ve~gEs~~~aA~REl~EEtGl~~~~~~~--l~~~~~~~~~~~~~  201 (275)
                      ..+++++|.. .++||++..     ....|.||-|++...|+-.+||+|||.||||.+......  .+ +..  ...+..
T Consensus        84 v~ga~ild~~~sr~llv~g~-----qa~sw~fprgK~~kdesd~~caiReV~eetgfD~skql~~~e~-Ie~--nI~dq~  155 (348)
T KOG2937|consen   84 VRGAIILDEKRSRCLLVKGW-----QASSWSFPRGKISKDESDSDCAIREVTEETGFDYSKQLQDNEG-IET--NIRDQL  155 (348)
T ss_pred             CchHhhhhhhhhhhheeece-----ecccccccCccccccchhhhcchhcccchhhcCHHHHhccccC-ccc--chhhce
Confidence            4667888843 689999887     345599999999999999999999999999998753311  11 111  122333


Q ss_pred             EEEEEEEEecCCccccC-CccccceEEEEeHhhHh
Q 039665          202 DLFFVCMLRPRNFHIQK-QDSEIAAAQWMQAEDYA  235 (275)
Q Consensus       202 ~~~f~~~~~~~~~~~~~-~~~E~~~~~Wv~~eel~  235 (275)
                      ...|+...........+ --.|+..+.|..++++.
T Consensus       156 ~~~fIi~gvs~d~~f~~~v~~eis~ihW~~l~~l~  190 (348)
T KOG2937|consen  156 VRLFIINGVSEDTNFNPRVRKEISKIHWHYLDHLV  190 (348)
T ss_pred             eeeeeeccceeeeecchhhhccccceeeeehhhhc
Confidence            33344311111111111 23688899999999993

>KOG4195 consensus Transient receptor potential-related channel 7 [Inorganic ion transport and metabolism]

Probab=97.52  E-value=9e-05  Score=62.32  Aligned_cols=39  Identities=33%  Similarity=0.660  Sum_probs=34.7

Q ss_pred             eEEEEEEecCCCCCCCceeCcceeccCCCCHHHHHHHHHHHHhC
Q 039665          136 ELLVVQENNGALKGTGVWKLPTGTIEEGEDICAAAVREVKEETG  179 (275)
Q Consensus       136 ~vLLv~r~~~~~~~~~~w~lPgG~ve~gEs~~~aA~REl~EEtG  179 (275)
                      +++.+||.     ..+.|.+|||.+|+||.+-.+.+||+.||.=
T Consensus       140 e~vavkr~-----d~~~WAiPGGmvdpGE~vs~tLkRef~eEa~  178 (275)
T KOG4195|consen  140 EFVAVKRP-----DNGEWAIPGGMVDPGEKVSATLKREFGEEAM  178 (275)
T ss_pred             EEEEEecC-----CCCcccCCCCcCCchhhhhHHHHHHHHHHHH
Confidence            57788887     5689999999999999999999999999963

>KOG4432 consensus Uncharacterized NUDIX family hydrolase [General function prediction only]

Probab=97.40  E-value=0.00063  Score=59.82  Aligned_cols=115  Identities=20%  Similarity=0.150  Sum_probs=79.3

Q ss_pred             EEEEEEEe-CCceEEEEEEecCCC--------------------------CCCCceeCcceeccCCCCHHHHHHHHHHHH
Q 039665          125 GVGAFVMN-NKRELLVVQENNGAL--------------------------KGTGVWKLPTGTIEEGEDICAAAVREVKEE  177 (275)
Q Consensus       125 ~v~~vv~~-~~~~vLLv~r~~~~~--------------------------~~~~~w~lPgG~ve~gEs~~~aA~REl~EE  177 (275)
                      +|.++++| ...+++|+|+.|...                          .-+-+.++.+|.++..-+..+-|.||..||
T Consensus       231 Svt~iL~n~srk~LVlvqqfRpaVy~G~~~~~~~g~~~~vDe~~~~e~~PaigvTlELcag~Vd~p~s~~e~a~~e~vee  310 (405)
T KOG4432|consen  231 SVTCILVNMSRKELVLVQQFRPAVYVGKNRFLKEGIGKPVDEIDFSESDPAIGVTLELCAGRVDDPFSDPEKAARESVEE  310 (405)
T ss_pred             ceEEEEEeccchheehhhhcCcceeecceeecccCCCCcccccccccCCccceeeeeeecccCCCCcccHHHHHHHHHHH
Confidence            57788888 566788888765321                          112356777888888788999999999999


Q ss_pred             hCCCcc--eeEEEEEEeeeccccceEEEEEEEEEecCC----ccccCCccccceEEEEeHhhHhcCCC
Q 039665          178 TGIDTE--FVEVLAFRQSHRSFFRKSDLFFVCMLRPRN----FHIQKQDSEIAAAQWMQAEDYAAQPY  239 (275)
Q Consensus       178 tGl~~~--~~~~l~~~~~~~~~~~~~~~~f~~~~~~~~----~~~~~~~~E~~~~~Wv~~eel~~~~~  239 (275)
                      +|+++.  .++.+..+....+..+.....|.|.++...    +--..+++|..++.-++++++..+..
T Consensus       311 cGYdlp~~~~k~va~y~sGVG~SG~~QTmfy~eVTdA~rsgpGgg~~ee~E~IEvv~lsle~a~~~~~  378 (405)
T KOG4432|consen  311 CGYDLPEDSFKLVAKYISGVGQSGDTQTMFYVEVTDARRSGPGGGEKEEDEDIEVVRLSLEDAPSLYR  378 (405)
T ss_pred             hCCCCCHHHHhhhheeecccCCcCCeeEEEEEEeehhhccCCCCCcccccceeeEEEechhhhhHHHh
Confidence            999874  345555555555555666666667554322    11223456888999999999988744

>KOG4432 consensus Uncharacterized NUDIX family hydrolase [General function prediction only]

Probab=97.33  E-value=0.0004  Score=61.01  Aligned_cols=87  Identities=15%  Similarity=0.167  Sum_probs=62.6

Q ss_pred             eEEEEEEEeCC-ceEEEEEEecCCC------------------------CCCCceeCcceeccCCCCHHHHHHHHHHHHh
Q 039665          124 VGVGAFVMNNK-RELLVVQENNGAL------------------------KGTGVWKLPTGTIEEGEDICAAAVREVKEET  178 (275)
Q Consensus       124 v~v~~vv~~~~-~~vLLv~r~~~~~------------------------~~~~~w~lPgG~ve~gEs~~~aA~REl~EEt  178 (275)
                      -+|.+++++.+ .++|++|+.|+..                        .-+.+.++.||.+|..-++.+-|..|+.||+
T Consensus        27 ~~v~ill~~r~~eq~l~vrqfr~ai~~~~~s~~~~~~~~~~~d~~~~~~e~g~tielc~g~idke~s~~eia~eev~eec  106 (405)
T KOG4432|consen   27 SSVSILLFHRDLEQFLLVRQFRPAIFTASNSPENHGKEFDKIDWSSYDSETGYTIELCAGLIDKELSPREIASEEVAEEC  106 (405)
T ss_pred             cceEEEEEccchhhhehhhhhchhheecccCCCCCCcccccccHhhCCCccceeeeeeccccccccCHHHHhHHHHHHHh
Confidence            35778888844 6799999876421                        1123568999999999999999999999999


Q ss_pred             CCCcceeEEEEEEeeeccc--cceEEEEEEEEEe
Q 039665          179 GIDTEFVEVLAFRQSHRSF--FRKSDLFFVCMLR  210 (275)
Q Consensus       179 Gl~~~~~~~l~~~~~~~~~--~~~~~~~f~~~~~  210 (275)
                      |+++....++..+....+.  .+...++|.|...
T Consensus       107 gy~v~~d~l~hv~~~~~g~~~s~sa~~l~y~ei~  140 (405)
T KOG4432|consen  107 GYRVDPDDLIHVITFVVGAHQSGSAQHLYYAEID  140 (405)
T ss_pred             CCcCChhHceEEEEEEeccccCccchheeeeecc
Confidence            9999776666544433322  3345677777654

>PRK13910 DNA glycosylase MutY; Provisional

Probab=96.31  E-value=0.038  Score=49.54  Aligned_cols=91  Identities=10%  Similarity=0.129  Sum_probs=53.7

Q ss_pred             EEEEeCCceEEEEEEecCCCCCCCceeCcceeccCCCCHHHHHHHHHHHHhCCCcceeEEEEEEeeeccccceEEEEEEE
Q 039665          128 AFVMNNKRELLVVQENNGALKGTGVWKLPTGTIEEGEDICAAAVREVKEETGIDTEFVEVLAFRQSHRSFFRKSDLFFVC  207 (275)
Q Consensus       128 ~vv~~~~~~vLLv~r~~~~~~~~~~w~lPgG~ve~gEs~~~aA~REl~EEtGl~~~~~~~l~~~~~~~~~~~~~~~~f~~  207 (275)
                      +++++ ++++||.||. .+ .+.|+|+||+.  +.              +.+....   .++.+.+.++++.....+|.+
T Consensus       191 ~~~~~-~~~~ll~kr~-~~-l~~gl~~fP~~--~~--------------~~~~~~~---~~~~~~H~fTH~~~~~~~~~~  248 (289)
T PRK13910        191 GVVIQ-NNQIALEKIE-QK-LYLGMHHFPNL--KE--------------NLEYKLP---FLGAIKHSHTKFKLNLNLYLA  248 (289)
T ss_pred             EEEEE-CCEEEEEECC-Cc-hhcccccCCCC--hh--------------hhccccc---ccCceEEEEEeEEEEEEEEEE
Confidence            34444 6789998874 44 57899999963  21              1111111   234555666665655566655


Q ss_pred             EEecCCccccCCccccceEEEEeHhhHhcCCCcccchHHHHHHHHH
Q 039665          208 MLRPRNFHIQKQDSEIAAAQWMQAEDYAAQPYVLKHQMFNYICQIC  253 (275)
Q Consensus       208 ~~~~~~~~~~~~~~E~~~~~Wv~~eel~~~~~~~~~~~~~~~~~~~  253 (275)
                      ....       .   .....|++++++.+++++..   ++++++.+
T Consensus       249 ~~~~-------~---~~~~~w~~~~~~~~~~~p~~---~~k~~~~l  281 (289)
T PRK13910        249 AIKD-------L---KNPIRFYSLKDLETLPISSM---TLKILNFL  281 (289)
T ss_pred             Eecc-------C---CccceEecHHHhhhcCCcHH---HHHHHHHH
Confidence            3321       0   12348999999999988754   44555443

>PF13869 NUDIX_2: Nucleotide hydrolase; PDB: 3MDG_B 2J8Q_B 3Q2S_A 3P5T_D 3BAP_A 2CL3_A 3P6Y_A 3Q2T_B 3BHO_A 3N9U_A

Probab=94.74  E-value=0.13  Score=43.00  Aligned_cols=41  Identities=27%  Similarity=0.454  Sum_probs=30.5

Q ss_pred             ceEEEEEEecCCCCCCCceeCcceeccCCCCHHHHHHHHHHHHhCCC
Q 039665          135 RELLVVQENNGALKGTGVWKLPTGTIEEGEDICAAAVREVKEETGID  181 (275)
Q Consensus       135 ~~vLLv~r~~~~~~~~~~w~lPgG~ve~gEs~~~aA~REl~EEtGl~  181 (275)
                      -.|||.|..      ...|.+|||.+.+||+..++..|.+.+-.|..
T Consensus        58 PHvLLLq~~------~~~fkLPGg~l~~gE~e~~gLkrkL~~~l~~~   98 (188)
T PF13869_consen   58 PHVLLLQIG------NTFFKLPGGRLRPGEDEIEGLKRKLTEKLSPE   98 (188)
T ss_dssp             EEEEEEEET------TTEEE-SEEE--TT--HHHHHHHHHHHHHB-S
T ss_pred             cEEEEEecc------CccccCCccEeCCCCChhHHHHHHHHHHcCCC
Confidence            469999864      34899999999999999999999999999986

...

>COG1194 MutY A/G-specific DNA glycosylase [DNA replication, recombination, and repair]

Probab=94.70  E-value=0.084  Score=48.05  Aligned_cols=98  Identities=17%  Similarity=0.212  Sum_probs=60.7

Q ss_pred             eeEEEEEEEeCCceEEEEEEecCCCCCCCceeCcceeccCCCCHHHHHHHHHHHHhCCCcceeEEEEEEeeeccccceEE
Q 039665          123 RVGVGAFVMNNKRELLVVQENNGALKGTGVWKLPTGTIEEGEDICAAAVREVKEETGIDTEFVEVLAFRQSHRSFFRKSD  202 (275)
Q Consensus       123 ~v~v~~vv~~~~~~vLLv~r~~~~~~~~~~w~lPgG~ve~gEs~~~aA~REl~EEtGl~~~~~~~l~~~~~~~~~~~~~~  202 (275)
                      +..++.++.+.+++++|.+|...+. ..|+|+||....+.  ..     .+..-+.|+..   +.++.+.+.++++....
T Consensus       235 ~~~~~~~~~~~~~~~~l~kr~~~gl-~~gl~~fP~~e~~~--~~-----~~~~~~~~~~~---~~~~~~~H~fth~~l~i  303 (342)
T COG1194         235 RRFAAFLILNRDGEVLLEKRPEKGL-LGGLWCFPQFEDEA--DL-----LDWLAADGLAA---EPLGAFRHTFTHFRLTI  303 (342)
T ss_pred             hheeeEEEEccCcchhhhhCcccCc-eecccccccccccc--hh-----hhHhhhccccc---ccccceeeeeeEEEEEE
Confidence            5567778888899999999987665 68999999976544  22     22233344443   33555555555544333


Q ss_pred             EEEEEEEecCCccccCCccccceEEEEeHhhHhcCCCccc
Q 039665          203 LFFVCMLRPRNFHIQKQDSEIAAAQWMQAEDYAAQPYVLK  242 (275)
Q Consensus       203 ~~f~~~~~~~~~~~~~~~~E~~~~~Wv~~eel~~~~~~~~  242 (275)
                      . +.+....         ... +..|++++++....++..
T Consensus       304 ~-~~a~~~~---------~~~-~~~w~~~~~~~~~~l~~p  332 (342)
T COG1194         304 E-LRASASL---------VLS-DGRWYNLSDLESIGLPAP  332 (342)
T ss_pred             E-EEeeccc---------CCC-CceeccccccccccccHH
Confidence            3 2221110         222 689999999998766543

>KOG4313 consensus Thiamine pyrophosphokinase [Nucleotide transport and metabolism]

Probab=94.38  E-value=0.24  Score=42.81  Aligned_cols=111  Identities=20%  Similarity=0.287  Sum_probs=70.1

Q ss_pred             EEEEEEEeCC---ceEEEEEEecCCCCCCCcee-CcceeccCCCCHHHHHHHHHHHHhCCCcceeEE---EEEEeee---
Q 039665          125 GVGAFVMNNK---RELLVVQENNGALKGTGVWK-LPTGTIEEGEDICAAAVREVKEETGIDTEFVEV---LAFRQSH---  194 (275)
Q Consensus       125 ~v~~vv~~~~---~~vLLv~r~~~~~~~~~~w~-lPgG~ve~gEs~~~aA~REl~EEtGl~~~~~~~---l~~~~~~---  194 (275)
                      .+.+.|.++.   -++.+.||++.+-.+++.|+ +-||++--|-.+.++|+.|..||..+.......   .|.....   
T Consensus       135 hingYV~~pk~~~l~iWvprRS~TKqTWP~~lDN~vaGGl~~g~gI~eT~iKE~~EEAnl~~~~~~Nlv~~G~VSy~~~e  214 (306)
T KOG4313|consen  135 HINGYVRHPKLGPLCIWVPRRSNTKQTWPGKLDNMVAGGLSVGFGIKETAIKEAAEEANLPSDLVKNLVSAGCVSYYKFE  214 (306)
T ss_pred             eeeeeecCCCcCceEEEecccCCccccCcchhhhhhccccccCchHHHHHHHHHHHhcCCchhhHhcceecceeEEEeee
Confidence            3444555533   25888888887777889886 468999999999999999999999998732221   1222111   


Q ss_pred             --ccccceEEEEEEEEEecCCccccCCccccceEEEEeHhhHhc
Q 039665          195 --RSFFRKSDLFFVCMLRPRNFHIQKQDSEIAAAQWMQAEDYAA  236 (275)
Q Consensus       195 --~~~~~~~~~~f~~~~~~~~~~~~~~~~E~~~~~Wv~~eel~~  236 (275)
                        ...+....++|-..+. ...-++..+.|...+..+++.+-.+
T Consensus       215 sr~~~~pe~qYVfDL~l~-~d~iP~~nDGEV~~F~Lltl~~~v~  257 (306)
T KOG4313|consen  215 SRQGLFPETQYVFDLELP-LDFIPQNNDGEVQAFELLTLKDCVE  257 (306)
T ss_pred             hhhccCccceEEEeccCc-hhhcCCCCCCceeeEeeecHHHHHH
Confidence              1222233333332221 1223344567888888888877654

>KOG1689 consensus mRNA cleavage factor I subunit [RNA processing and modification]

Probab=94.31  E-value=0.12  Score=42.02  Aligned_cols=46  Identities=26%  Similarity=0.491  Sum_probs=37.7

Q ss_pred             EEEEeCC--ceEEEEEEecCCCCCCCceeCcceeccCCCCHHHHHHHHHHHHhC
Q 039665          128 AFVMNNK--RELLVVQENNGALKGTGVWKLPTGTIEEGEDICAAAVREVKEETG  179 (275)
Q Consensus       128 ~vv~~~~--~~vLLv~r~~~~~~~~~~w~lPgG~ve~gEs~~~aA~REl~EEtG  179 (275)
                      ++++.+.  .+|||.|-.      ...+++|||.+++||+-.+...|-+-|-+|
T Consensus        75 vlivheH~lPHvLLLQig------~tf~KLPGG~L~pGE~e~~Gl~r~l~~~Lg  122 (221)
T KOG1689|consen   75 VLIVHEHNLPHVLLLQIG------NTFFKLPGGRLRPGEDEADGLKRLLTESLG  122 (221)
T ss_pred             eEEEeecCCCeEEEEeeC------CEEEecCCCccCCCcchhHHHHHHHHHHhc
Confidence            4444433  678888754      467999999999999999999999999999

>KOG4548 consensus Mitochondrial ribosomal protein L17 [Translation, ribosomal structure and biogenesis]

Probab=93.34  E-value=0.42  Score=41.46  Aligned_cols=98  Identities=17%  Similarity=0.263  Sum_probs=59.8

Q ss_pred             eEEEEEEecCCCCCCCceeCcceec-cCCCCHHHHHHHHHHHHhCCCcceeE----EEEEE--eeecc---cc--ceEEE
Q 039665          136 ELLVVQENNGALKGTGVWKLPTGTI-EEGEDICAAAVREVKEETGIDTEFVE----VLAFR--QSHRS---FF--RKSDL  203 (275)
Q Consensus       136 ~vLLv~r~~~~~~~~~~w~lPgG~v-e~gEs~~~aA~REl~EEtGl~~~~~~----~l~~~--~~~~~---~~--~~~~~  203 (275)
                      =+|||++.-+   ..+.|.||.+.. +.++++..+|.|+|.+-.|=....+-    .++..  .....   ..  +....
T Consensus       140 LyLLV~~k~g---~~s~w~fP~~~~s~~~~~lr~~ae~~Lk~~~ge~~~t~fvgnaP~g~~~~q~pr~~~~e~~~~sk~f  216 (263)
T KOG4548|consen  140 LYLLVKRKFG---KSSVWIFPNRQFSSSEKTLRGHAERDLKVLSGENKSTWFVGNAPFGHTPLQSPREMTTEEPVSSKVF  216 (263)
T ss_pred             EEEEEeeccC---ccceeeCCCcccCCccchHHHHHHHHHHHHhcchhhhheeccCccccccccCcccccccccccceeE
Confidence            4788885533   357999999999 99999999999999999886654332    12211  10000   01  12233


Q ss_pred             EEEEEEecCCccccCCccccceEEEEeHhhHhcCCC
Q 039665          204 FFVCMLRPRNFHIQKQDSEIAAAQWMQAEDYAAQPY  239 (275)
Q Consensus       204 ~f~~~~~~~~~~~~~~~~E~~~~~Wv~~eel~~~~~  239 (275)
                      +|-|.+...+..   +..-..++.|++-+|+.+...
T Consensus       217 f~k~~lv~~~~~---kn~n~edfvWvTkdel~e~l~  249 (263)
T KOG4548|consen  217 FFKASLVANSNQ---KNQNKEDFVWVTKDELGEKLP  249 (263)
T ss_pred             Eeeeeeccccch---hcccccceEEechHHHhhhcc
Confidence            444444433211   222334599999999988643

>TIGR01084 mutY A/G-specific adenine glycosylase

Probab=92.43  E-value=0.38  Score=42.84  Aligned_cols=32  Identities=22%  Similarity=0.211  Sum_probs=24.1

Q ss_pred             EEEEEEeCCceEEEEEEecCCCCCCCceeCcce
Q 039665          126 VGAFVMNNKRELLVVQENNGALKGTGVWKLPTG  158 (275)
Q Consensus       126 v~~vv~~~~~~vLLv~r~~~~~~~~~~w~lPgG  158 (275)
                      ..+++.+.++++|+.||...+. ..|+|+||+.
T Consensus       230 ~~~~~~~~~~~~~~~~r~~~~~-~~gl~~~p~~  261 (275)
T TIGR01084       230 YFLVLQNYDGEVLLEQRPEKGL-WGGLYCFPQF  261 (275)
T ss_pred             EEEEEEeCCCeEEEEeCCCCch-hhccccCCCC
Confidence            4344456678999999976654 6899999974

This equivalog model identifies mutY members of the pfam00730 superfamily (HhH-GPD: Helix-hairpin-helix and Gly/Pro rich loop followed by a conserved aspartate). The major members of the superfamily are nth and mutY.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	275
3h95_A	199	Crystal Structure Of The Nudix Domain Of Nudt6 Leng		9e-19
3gg6_A	156	Crystal Structure Of The Nudix Domain Of Human Nudt		2e-06
3fxt_A	113	Crystal Structure Of The N-Terminal Domain Of Human		2e-06
1sjy_A	159	Crystal Structure Of Nudix Hydrolase Dr1025 From De		2e-06
1f3y_A	165	Solution Structure Of The Nudix Enzyme Diadenosine		5e-06
3o8s_A	206	Crystal Structure Of An Adp-Ribose Pyrophosphatase		7e-06
1vc8_A	126	Crystal Structure Of A T.Thermophilus Hb8 Ap6a Hydr		9e-06
1vc9_A	126	Crystal Structure Of A T.thermophilus Hb8 Ap6a Hydr		2e-05
3r03_A	144	The Crystal Structure Of Nudix Hydrolase From Rhodo		3e-05
3dku_A	153	Crystal Structure Of Nudix Hydrolase Orf153, Ymfb,		6e-05
3grn_A	153	Crystal Structure Of Mutt Protein From Methanosarci		7e-04
1v8i_A	170	Crystal Structure Analysis Of The Adp-Ribose Pyroph		9e-04

>pdb|3H95|A Chain A, Crystal Structure Of The Nudix Domain Of Nudt6 Length = 199

Iteration: 1
 Score = 90.5 bits (223), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 54/127 (42%), Positives = 72/127 (56%), Gaps = 6/127 (4%)
Query: 112 TADVLPANASHRVGV-GAFVMNNKRELLVVQENNGALKGTGVWKLPTGTIEEGEDICAAA 170
           T ++   + SH+VGV GA    + R++LVVQ+ N   K   +WK P G  E  EDI   A
Sbjct: 15  TENLYFQSMSHQVGVAGAVFDESTRKILVVQDRN---KLKNMWKFPGGLSEPEEDIGDTA 71
Query: 171 VREVKEETGIDTEFVEVLAFRQSHRS--FFRKSDLFFVCMLRPRNFHIQKQDSEIAAAQW 228
           VREV EETGI +EF  VL+ RQ H +   F KSD++ +C L+P +F I     E    +W
Sbjct: 72  VREVFEETGIKSEFRSVLSIRQQHTNPGAFGKSDMYIICRLKPYSFTINFCQEECLRCEW 131
Query: 229 MQAEDYA 235
           M   D A
Sbjct: 132 MDLNDLA 138

>pdb|3GG6|A Chain A, Crystal Structure Of The Nudix Domain Of Human Nudt18 Length = 156

Iteration: 1
 Score = 49.7 bits (117), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 35/106 (33%), Positives = 54/106 (50%), Gaps = 10/106 (9%)
Query: 126 VGAFVMNNKRELLVVQENNGALKGTGVWKLPTGTIEEGEDICAAAVREVKEETGIDTEFV 185
           V A  ++ + E+L++QE     +G+  W LP G +E GE I  A  REVKEE G+  E  
Sbjct: 23  VLAVFLSEQDEVLLIQEAKRECRGS--WYLPAGRMEPGETIVEALQREVKEEAGLHCEPE 80
Query: 186 EVLAFRQSHRSFFRKSDLFFVCMLRPRNFHI---QKQDSEIAAAQW 228
            +L+  +   S+ R     FV + RP    +   ++ D+E   A W
Sbjct: 81  TLLSVEERGPSWVR-----FVFLARPTGGILKTSKEADAESLQAAW 121

>pdb|3FXT|A Chain A, Crystal Structure Of The N-Terminal Domain Of Human Nudt6 Length = 113

Iteration: 1
 Score = 49.7 bits (117), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 23/81 (28%), Positives = 37/81 (45%), Gaps = 5/81 (6%)
Query: 36  DLHGGVTVDMKK-----PMDSKVFXXXXXXXXXXXXQQGKRGVWIKLPIELANLVEPAVQ 90
           D  GG++V + +      +D+  F             +G+  VW+ +PI  +  + PA  
Sbjct: 30  DRFGGISVRLARLDALDRLDAAAFQKGLQAAVQQWRSEGRTAVWLHIPILQSRFIAPAAS 89
Query: 91  EGFRYHHAEPDYLMLVYWIPE 111
            GF +HHAE D   L  W+ E
Sbjct: 90  LGFCFHHAESDSSTLTLWLRE 110

>pdb|1SJY|A Chain A, Crystal Structure Of Nudix Hydrolase Dr1025 From Deinococcus Radiodurans Length = 159

Iteration: 1
 Score = 49.7 bits (117), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 43/149 (28%), Positives = 72/149 (48%), Gaps = 12/149 (8%)
Query: 127 GAFVMNNKRELLVVQENN--GALKGTGVWKLPTGTIEEGEDICAAAVREVKEETGIDTEF 184
           G  ++N + ++L+VQE    G  +  G+W +P+G +E+GE+   AAVRE  EETG+    
Sbjct: 17  GVVLLNERGDILLVQEKGIPGHPEKAGLWHIPSGAVEDGENPQDAAVREACEETGLRVRP 76
Query: 185 VEVLAFRQSHRSFFRKSDLF----FVCMLRPRNFHIQKQDSEIAAAQWMQAEDYAAQPYV 240
           V+ L    ++   F    L     ++    P          EIA A ++  ED+ AQ Y 
Sbjct: 77  VKFLG---AYLGRFPDGVLILRHVWLAEPEPGQTLAPAFTDEIAEASFVSREDF-AQLYA 132
Query: 241 LKHQMFNYICQICLTKSEKEYAGFSPMPL 269
              Q+  Y  ++    + +E  GF  +P+
Sbjct: 133 -AGQIRMYQTKLFYADALRE-KGFPALPV 159

>pdb|1F3Y|A Chain A, Solution Structure Of The Nudix Enzyme Diadenosine Tetraphosphate Hydrolase From Lupinus Angustifolius L. Length = 165

Iteration: 1
 Score = 48.1 bits (113), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 26/68 (38%), Positives = 40/68 (58%), Gaps = 6/68 (8%)
Query: 122 HRVGVGAFVMNNKRELLVVQENNGALKGTGVWKLPTGTIEEGEDICAAAVREVKEETGID 181
           +R  VG  +MNN +++         L     W++P G I+EGED   AA+RE++EETG+ 
Sbjct: 13  YRRNVGICLMNNDKKIFAASR----LDIPDAWQMPQGGIDEGEDPRNAAIRELREETGVT 68
Query: 182 TEFVEVLA 189
           +   EV+A
Sbjct: 69  S--AEVIA 74

>pdb|3O8S|A Chain A, Crystal Structure Of An Adp-Ribose Pyrophosphatase (Ssu98_1448) From Streptococcus Suis 89-1591 At 2.27 A Resolution Length = 206

Iteration: 1
 Score = 47.8 bits (112), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 38/131 (29%), Positives = 61/131 (46%), Gaps = 17/131 (12%)
Query: 136 ELLVVQENNGALKGTGVWKLPTGTIEEGEDICAAAVREVKEETGIDTEFVEVLAFRQSH- 194
           ++L+VQEN+G      +W LP G  +  + +    V+EVKEE G+D E   V+A    H 
Sbjct: 82  KILLVQENDG------LWSLPGGWCDVDQSVKDNVVKEVKEEAGLDVEAQRVVAILDKHK 135
Query: 195 ----RSFFRKSDLFFVCMLRPRNFHIQKQDSEIAAAQWMQAEDYAAQPYVLKHQMFNYIC 250
               +S  R + +F +C L    F   + +SE  A+ +   +D    P  L       + 
Sbjct: 136 NNPAKSAHRVTKVFILCRLLGGEF---QPNSETVASGFFSLDDLP--PLYLGKNTAEQLA 190
Query: 251 QICLTKSEKEY 261
            +CL  S  E+
Sbjct: 191 -LCLEASRSEH 200

>pdb|1VC8|A Chain A, Crystal Structure Of A T.Thermophilus Hb8 Ap6a Hydrolase Ndx1-Ap6a Complex Length = 126

Iteration: 1
 Score = 47.4 bits (111), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 26/62 (41%), Positives = 35/62 (56%), Gaps = 6/62 (9%)
Query: 124 VGVGAFVMNNKRELLVVQENNGALKGTGVWKLPTGTIEEGEDICAAAVREVKEETGIDTE 183
           +G G  V N KRE+L++++        G W  P G  E GE +  AAVREV EETG+  E
Sbjct: 3   LGAGGVVFNAKREVLLLRDR------MGFWVFPKGHPEPGESLEEAAVREVWEETGVRAE 56
Query: 184 FV 185
            +
Sbjct: 57  VL 58

>pdb|1VC9|A Chain A, Crystal Structure Of A T.thermophilus Hb8 Ap6a Hydrolase E50q Mutant- Mg2+-atp Complex Length = 126

Iteration: 1
 Score = 46.2 bits (108), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 25/62 (40%), Positives = 35/62 (56%), Gaps = 6/62 (9%)
Query: 124 VGVGAFVMNNKRELLVVQENNGALKGTGVWKLPTGTIEEGEDICAAAVREVKEETGIDTE 183
           +G G  V N KRE+L++++        G W  P G  E GE +  AAVREV E+TG+  E
Sbjct: 3   LGAGGVVFNAKREVLLLRDR------MGFWVFPKGHPEPGESLEEAAVREVWEQTGVRAE 56
Query: 184 FV 185
            +
Sbjct: 57  VL 58

>pdb|3R03|A Chain A, The Crystal Structure Of Nudix Hydrolase From Rhodospirillum Rubrum Length = 144

Iteration: 1
 Score = 45.4 bits (106), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 33/111 (29%), Positives = 49/111 (44%), Gaps = 8/111 (7%)
Query: 124 VGVGAFVMNNKRELLVVQENNGALKGTGVWKLPTGTIEEGEDICAAAVREVKEETGIDTE 183
           V   A +  + R LL  +    +L   G+W+ P G +E GE   AA VRE+ EE G+DT 
Sbjct: 10  VTAAALIDPDGRVLLAQRPPGKSL--AGLWEFPGGKLEPGETPEAALVRELAEELGVDTR 67
Query: 184 --FVEVLAFRQSHRSFFRKSDLFFVCMLRPRNFHIQKQDSEIAAAQWMQAE 232
              +  LAF       F      + C    R++  +    E     W++AE
Sbjct: 68  ASCLAPLAFASHSYDTFHLLXPLYAC----RSWRGRATAREGQTLAWVRAE 114

>pdb|3DKU|A Chain A, Crystal Structure Of Nudix Hydrolase Orf153, Ymfb, From Escherichia Coli K-1 Length = 153

Iteration: 1
 Score = 44.7 bits (104), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 31/109 (28%), Positives = 54/109 (49%), Gaps = 9/109 (8%)
Query: 128 AFVMNNKRELLVVQENNGALKGTGVWKLPTGTIEEGEDICAAAVREVKEETGIDTE---F 184
           A V++ + + LVV+E    + G  +W  P G +E  E +  AA RE+ EETGI  +   F
Sbjct: 9   ACVVHAEGKFLVVEET---INGKALWNQPAGHLEADETLVEAAARELWEETGISAQPQHF 65
Query: 185 VEVLAFRQSHRSFFRKSDLFFVCMLRPRNFHIQKQDSEIAAAQWMQAED 233
           + +  +    ++ F +   F   +   +    Q  DS+I   +W+ AE+
Sbjct: 66  IRMHQWIAPDKTPFLR---FLFAIELEQICPTQPHDSDIDCCRWVSAEE 111

>pdb|3GRN|A Chain A, Crystal Structure Of Mutt Protein From Methanosarcina Mazei Go1 Length = 153

Iteration: 1
 Score = 41.2 bits (95), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 20/57 (35%), Positives = 29/57 (50%)
Query: 124 VGVGAFVMNNKRELLVVQENNGALKGTGVWKLPTGTIEEGEDICAAAVREVKEETGI 180
           + V A + N K E L+++ +  +    G W LP G +   E +     REV EETGI
Sbjct: 9   ISVYALIRNEKGEFLLLRRSENSRTNAGKWDLPGGKVNPDESLKEGVAREVWEETGI 65

>pdb|1V8I|A Chain A, Crystal Structure Analysis Of The Adp-Ribose Pyrophosphatase Length = 170

Iteration: 1
 Score = 40.8 bits (94), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 31/112 (27%), Positives = 47/112 (41%), Gaps = 4/112 (3%)
Query: 122 HRVGVGAFVMNNKRELLVVQENNGALKGTGVWKLPTGTIEEGEDICAAAVREVKEETGID 181
           H+  V    +   R L V Q       G    ++P G IE GED   AA RE+ EETG+ 
Sbjct: 33  HKPAVAVIALREGRMLFVRQMRPAV--GLAPLEIPAGLIEPGEDPLEAARRELAEETGLS 90
Query: 182 TEFVEVLAFRQSHRSFFRKSDLFFVCMLRPRNFHIQKQDSEIAAAQWMQAED 233
            +   + ++  S      K+ +F    L+    H    + E     WM+ E+
Sbjct: 91  GDLTYLFSYFVSPGFTDEKTHVFLAENLKEVEAH--PDEDEAIEVVWMRPEE 140

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	275
3h95_A	199	Nucleoside diphosphate-linked moiety X motif 6; NU	4e-45
3fxt_A	113	Nucleoside diphosphate-linked moiety X motif 6; nu	8e-36
3shd_A	153	Phosphatase NUDJ; nudix fold, nudix motif, hydrola	8e-30
3gg6_A	156	Nudix motif 18, nucleoside diphosphate-linked moie	7e-26
2b0v_A	153	Nudix hydrolase; structural genomics, PSI, protein	2e-25
1sjy_A	159	MUTT/nudix family protein; nudix fold, alpha-beta-	4e-24
2a6t_A	271	SPAC19A8.12; alpha/beta/alpha, RNA binding protein	1e-21
1vcd_A	126	NDX1; nudix protein, diadenosine polyphosphate, AP	1e-18
3eds_A	153	MUTT/nudix family protein; MUT/nudix protein, prot	4e-18
1xsa_A	153	BIS(5'-nucleosyl)-tetraphosphatase; nudix enzyme,	6e-18
3id9_A	171	MUTT/nudix family protein; hydrolase, protein stru	1e-17
1rya_A	160	GDP-mannose mannosyl hydrolase; GDP-glucose, nudix	2e-17
2jvb_A	146	Protein PSU1, mRNA-decapping enzyme subunit 2; DCP	7e-17
4dyw_A	157	MUTT/nudix family protein; structural genomics, ni	4e-16
2azw_A	148	MUTT/nudix family protein; MUTT/nudix ,enterococcu	5e-16
3grn_A	153	MUTT related protein; structural genomics, hydrola	6e-16
2pqv_A	154	MUTT/nudix family protein; structu genomics, PSI-2	8e-16
3q1p_A	205	Phosphohydrolase (MUTT/nudix family protein); asym	9e-15
2pbt_A	134	AP4A hydrolase; nudix protein, diadenosine polypho	4e-14
3f13_A	163	Putative nudix hydrolase family member; structural	1e-13
1ktg_A	138	Diadenosine tetraphosphate hydrolase; nudix, AMP,	2e-13
1k2e_A	156	Nudix homolog; nudix/MUTT-like fold, mixed alpha/b	7e-13
3o8s_A	206	Nudix hydrolase, ADP-ribose pyrophosphatase; struc	1e-12
3q93_A	176	7,8-dihydro-8-oxoguanine triphosphatase; structura	2e-12
3oga_A	165	Nucleoside triphosphatase NUDI; salmonella enteric	8e-12
3fjy_A	364	Probable MUTT1 protein; dimer, protein structure i	8e-12
3i9x_A	187	MUTT/nudix family protein; structural genomics, hy	8e-12
2b06_A	155	MUTT/nudix family protein; structural genomics, P	9e-12
2fvv_A	194	Diphosphoinositol polyphosphate phosphohydrolase 1	1e-11
2qjo_A	341	Bifunctional NMN adenylyltransferase/nudix hydrol;	1e-11
3cng_A	189	Nudix hydrolase; structural genomics, APC7497, PSI	3e-11
3exq_A	161	Nudix family hydrolase; protein structure initiati	4e-11
2kdv_A	164	RNA pyrophosphohydrolase; nudix family, magnesium,	4e-11
3son_A	149	Hypothetical nudix hydrolase; structural genomics,	7e-11
3f6a_A	159	Hydrolase, nudix family; protein structure initiat	4e-10
3fcm_A	197	Hydrolase, nudix family; protein structure initiat	9e-10
2qjt_B	352	Nicotinamide-nucleotide adenylyltransferase; two i	3e-09
2rrk_A	140	ORF135, CTP pyrophosphohydrolase; NMR {Escherichia	3e-09
3fk9_A	188	Mutator MUTT protein; structural genomics, hydrola	3e-09
3ees_A	153	Probable pyrophosphohydrolase; nudix, RNA pyrophos	5e-09
1f3y_A	165	Diadenosine 5',5'''-P1,P4-tetraphosphate hydrolase	6e-09
3hhj_A	158	Mutator MUTT protein; niaid, ssgcid, decode, UW, S	8e-09
2o1c_A	150	DATP pyrophosphohydrolase; nudix NTP hydrolase NTP	1e-08
1mut_A	129	MUTT, nucleoside triphosphate pyrophosphohydrolase	2e-08
2fml_A	273	MUTT/nudix family protein; structural genomics, PS	2e-08
1q27_A	171	Putative nudix hydrolase DR0079; radiation resista	4e-08
2yyh_A	139	MUTT domain, 8-OXO-DGTPase domain; nudix family pr	5e-08
3r03_A	144	Nudix hydrolase; structural genomics, PSI2, protei	6e-08
3gwy_A	140	Putative CTP pyrophosphohydrolase; structural geno	2e-07
1nqz_A	194	COA pyrophosphatase (MUTT/nudix family protein); D	3e-07
3gz5_A	240	MUTT/nudix family protein; DNA binding protein, nu	3e-07
2fkb_A	180	Putative nudix hydrolase YFCD; putative protein, M	7e-07
1vhz_A	198	ADP compounds hydrolase NUDE; structural genomics;	2e-06
2dsc_A	212	ADP-sugar pyrophosphatase; nudix domain, ADPR, ADP	4e-06
1v8y_A	170	ADP-ribose pyrophosphatase; nudix motif, loop-heli	4e-06
3dup_A	300	MUTT/nudix family protein; nudix superfamily hydro	6e-06
2w4e_A	145	MUTT/nudix family protein; ADP-ribose pyrophosphat	1e-05
2fb1_A	226	Conserved hypothetical protein; structural genomic	2e-05
2yvp_A	182	NDX2, MUTT/nudix family protein; nudix protein, AD	2e-05
1hzt_A	190	Isopentenyl diphosphate delta-isomerase; dimethyla	3e-05
1mk1_A	207	ADPR pyrophosphatase; nudix hydrolase, adprase, ad	1e-04
1q33_A	292	Pyrophosphatase, ADP-ribose pyrophosphatase; nudix	3e-04
1vk6_A	269	NADH pyrophosphatase; 1790429, structural genomics	6e-04

>3h95_A Nucleoside diphosphate-linked moiety X motif 6; NUDT6, nudix, hydrolase, GFG, GFG-1, FGF2AS, structural GENO structural genomics consortium, SGC; HET: FLC; 1.70A {Homo sapiens} Length = 199

 Score =  150 bits (379), Expect = 4e-45
 Identities = 55/149 (36%), Positives = 75/149 (50%), Gaps = 13/149 (8%)

Query: 95  YHHAEPDYLMLVYWIPETADVLPANASHRVGVGAFVMNNK-RELLVVQENNGALKGTGVW 153
           +HH+    L        T ++   + SH+VGV   V +   R++LVVQ+ N       +W
Sbjct: 5   HHHSSGVDL-------GTENLYFQSMSHQVGVAGAVFDESTRKILVVQDRNK---LKNMW 54

Query: 154 KLPTGTIEEGEDICAAAVREVKEETGIDTEFVEVLAFRQSHRSF--FRKSDLFFVCMLRP 211
           K P G  E  EDI   AVREV EETGI +EF  VL+ RQ H +   F KSD++ +C L+P
Sbjct: 55  KFPGGLSEPEEDIGDTAVREVFEETGIKSEFRSVLSIRQQHTNPGAFGKSDMYIICRLKP 114

Query: 212 RNFHIQKQDSEIAAAQWMQAEDYAAQPYV 240
            +F I     E    +WM   D A     
Sbjct: 115 YSFTINFCQEECLRCEWMDLNDLAKTENT 143

>3fxt_A Nucleoside diphosphate-linked moiety X motif 6; nudix, NUDT6, GFG, FGF2AS, antisense basic fibroblast growth FGF-2 regulation, hydrolase; 2.30A {Homo sapiens} Length = 113

 Score =  123 bits (309), Expect = 8e-36
 Identities = 29/100 (29%), Positives = 49/100 (49%), Gaps = 5/100 (5%)

Query: 18  NMMPEDGVRCPELLTAVGDLHGGVTVDMKK-----PMDSKVFSSRLRASLSLWRQQGKRG 72
           ++  E+       L    D  GG++V + +      +D+  F   L+A++  WR +G+  
Sbjct: 12  DLGTENLYFQSMDLQGELDRFGGISVRLARLDALDRLDAAAFQKGLQAAVQQWRSEGRTA 71

Query: 73  VWIKLPIELANLVEPAVQEGFRYHHAEPDYLMLVYWIPET 112
           VW+ +PI  +  + PA   GF +HHAE D   L  W+ E 
Sbjct: 72  VWLHIPILQSRFIAPAASLGFCFHHAESDSSTLTLWLREG 111

>3shd_A Phosphatase NUDJ; nudix fold, nudix motif, hydrolase, (D)NDP/(D)NTP binding, dephosphorylation; 2.50A {Escherichia coli} PDB: 3dku_A Length = 153

 Score =  109 bits (273), Expect = 8e-30
 Identities = 31/116 (26%), Positives = 45/116 (38%), Gaps = 4/116 (3%)

Query: 123 RVGVGAFVMNNKRELLVVQENNGALKGTGVWKLPTGTIEEGEDICAAAVREVKEETGIDT 182
            V V   V    +  LVV+E      G  +W  P G +E  E +  AA RE+ EETGI  
Sbjct: 5   HVTVACVVHAEGK-FLVVEETI---NGKALWNQPAGHLEADETLVEAAARELWEETGISA 60

Query: 183 EFVEVLAFRQSHRSFFRKSDLFFVCMLRPRNFHIQKQDSEIAAAQWMQAEDYAAQP 238
           +    +   Q           F   +   +    Q  DS+I   +W+ AE+     
Sbjct: 61  QPQHFIRMHQWIAPDKTPFLRFLFAIELEQICPTQPHDSDIDCCRWVSAEEILQAS 116

>3gg6_A Nudix motif 18, nucleoside diphosphate-linked moiety X motif 18; NUDT18, NXR1, nucleotide hydrolase, hydrolase, structural genomics; 2.10A {Homo sapiens} Length = 156

 Score = 98.7 bits (246), Expect = 7e-26
 Identities = 36/125 (28%), Positives = 52/125 (41%), Gaps = 8/125 (6%)

Query: 110 PETADVLPANASHRVGVGAFVMNNKRELLVVQENNGALKGTGVWKLPTGTIEEGEDICAA 169
           P     L  N  +   V A  ++ + E+L++QE        G W LP G +E GE I  A
Sbjct: 9   PPAPVRLRKNVCY--VVLAVFLSEQDEVLLIQEAKRE--CRGSWYLPAGRMEPGETIVEA 64

Query: 170 AVREVKEETGIDTEFVEVLAFRQSHRSFFRKSDLFFVCMLRPRNFHIQKQ-DSEIAAAQW 228
             REVKEE G+  E   +L+  +   S+ R     F+           K+ D+E   A W
Sbjct: 65  LQREVKEEAGLHCEPETLLSVEERGPSWVR---FVFLARPTGGILKTSKEADAESLQAAW 121

Query: 229 MQAED 233
                
Sbjct: 122 YPRTS 126

>2b0v_A Nudix hydrolase; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG, U function; 1.55A {Nitrosomonas europaea} SCOP: d.113.1.1 Length = 153

 Score = 97.6 bits (243), Expect = 2e-25
 Identities = 30/124 (24%), Positives = 48/124 (38%), Gaps = 4/124 (3%)

Query: 123 RVGVGAFVMNNKRELLVVQENNGALKGTGVWKLPTGTIEEGEDICAAAVREVKEETGIDT 182
            V V A +  + + LLV +   G          P G +E GE I  A  REV EETG   
Sbjct: 8   NVTVAAVIEQDDKYLLVEEIPRG---TAIKLNQPAGHLEPGESIIQACSREVLEETGHSF 64

Query: 183 EFVEVLAFRQSHRSFFRKSDLFFVCMLRPRNFHI-QKQDSEIAAAQWMQAEDYAAQPYVL 241
               +        +    + L F    +  +F   +K D+ I  A W   ++  A+  + 
Sbjct: 65  LPEVLTGIYHWTCASNGTTYLRFTFSGQVVSFDPDRKLDTGIVRAAWFSIDEIRAKQAMH 124

Query: 242 KHQM 245
           +  +
Sbjct: 125 RTPL 128

>1sjy_A MUTT/nudix family protein; nudix fold, alpha-beta-alpha sandwich, structural genomics, BSGC structure funded by NIH; 1.39A {Deinococcus radiodurans} SCOP: d.113.1.1 PDB: 1soi_A 1su2_A* 1sz3_A* Length = 159

 Score = 94.5 bits (235), Expect = 4e-24
 Identities = 35/123 (28%), Positives = 57/123 (46%), Gaps = 9/123 (7%)

Query: 122 HRVGVGAFVMNNKRELLVVQENN--GALKGTGVWKLPTGTIEEGEDICAAAVREVKEETG 179
                G  ++N + ++L+VQE    G  +  G+W +P+G +E+GE+   AAVRE  EETG
Sbjct: 12  ELRAAGVVLLNERGDILLVQEKGIPGHPEKAGLWHIPSGAVEDGENPQDAAVREACEETG 71

Query: 180 IDTEFVEVLAFRQSHRSFFRKSDLF----FVCMLRPRNFHIQKQDSEIAAAQWMQAEDYA 235
           +    V+ L    ++   F    L     ++    P          EIA A ++  ED+A
Sbjct: 72  LRVRPVKFLG---AYLGRFPDGVLILRHVWLAEPEPGQTLAPAFTDEIAEASFVSREDFA 128

Query: 236 AQP 238
              
Sbjct: 129 QLY 131

>2a6t_A SPAC19A8.12; alpha/beta/alpha, RNA binding protein,hydrolase; 2.50A {Schizosaccharomyces pombe} SCOP: a.242.1.1 d.113.1.7 PDB: 2qkm_B* Length = 271

 Score = 90.1 bits (223), Expect = 1e-21
 Identities = 27/166 (16%), Positives = 59/166 (35%), Gaps = 25/166 (15%)

Query: 126 VGAFVMN-NKRELLVVQENNGALKGTGVWKLPTGTIEEGEDICAAAVREVKEETGIDTEF 184
            GA +++ + ++ ++V+      K +  W  P G I++ E     A+REV EETG D   
Sbjct: 104 RGAIMLDMSMQQCVLVKGW----KASSGWGFPKGKIDKDESDVDCAIREVYEETGFDCS- 158

Query: 185 VEVLAFRQSHRSFFRKSDLFFVCMLRPRNFHIQ-KQDSEIAAAQWMQAED---------- 233
             +        +   ++   ++      +   + +   EI+  +W    D          
Sbjct: 159 SRINPNEFIDMTIRGQNVRLYIIPGISLDTRFESRTRKEISKIEWHNLMDLPTFKKNKPQ 218

Query: 234 ------YAAQPYVLKHQMFNYICQICLTKSEKEYAGFSPMPLTTGS 273
                 Y   P++    +  +I +  +  +  +    S       S
Sbjct: 219 TMKNKFYMVIPFL--APLKKWIKKRNIANNTTKEKNISVDVDADAS 262

>1vcd_A NDX1; nudix protein, diadenosine polyphosphate, AP6A, thermus THER HB8, hydrolase, riken structural genomics/proteomics initia RSGI; 1.70A {Thermus thermophilus} SCOP: d.113.1.1 PDB: 1vc8_A 1vc9_A* Length = 126

 Score = 78.9 bits (195), Expect = 1e-18
 Identities = 34/113 (30%), Positives = 50/113 (44%), Gaps = 15/113 (13%)

Query: 124 VGVGAFVMNNKRELLVVQENNGALKGTGVWKLPTGTIEEGEDICAAAVREVKEETGIDTE 183
           +G G  V N KRE+L++++  G       W  P G  E GE +  AAVREV EETG+  E
Sbjct: 3   LGAGGVVFNAKREVLLLRDRMG------FWVFPKGHPEPGESLEEAAVREVWEETGVRAE 56

Query: 184 FVEVLA-FRQSHRSFFRKSDLFFVCM--LRPRNFHIQKQDSEIAAAQWMQAED 233
            +  L   R  +     +   +F+      PR       +  +  A W   E+
Sbjct: 57  VLLPLYPTRYVNPKGVEREVHWFLMRGEGAPR------LEEGMTGAGWFSPEE 103

>1xsa_A BIS(5'-nucleosyl)-tetraphosphatase; nudix enzyme, human AP4A hydrolase, alpha-beta; NMR {Homo sapiens} SCOP: d.113.1.1 PDB: 1xsb_A 1xsc_A* Length = 153

 Score = 77.9 bits (192), Expect = 6e-18
 Identities = 30/115 (26%), Positives = 54/115 (46%), Gaps = 9/115 (7%)

Query: 123 RVGVGAFVMNNKRELLVVQENNGALKGTGVWKLPTGTIEEGEDICAAAVREVKEETGIDT 182
           R  +   V NN  E L++Q    A  G   W  P G +E GED    A+R  +EE GI+ 
Sbjct: 17  RRCLIPKVDNNAIEFLLLQ----ASDGIHHWTPPKGHVEPGEDDLETALRATQEEAGIEA 72

Query: 183 EFVEVLA-FRQSHRSFFR---KSDLFFVCMLRPRNFHIQKQDSEIAAAQWMQAED 233
             + ++  F++      R   K+ ++++  ++  +  I+    E  A +W+  E+
Sbjct: 73  GQLTIIEGFKRELNYVARNKPKTVIYWLAEVKDYDVEIR-LSHEHQAYRWLGLEE 126

>3id9_A MUTT/nudix family protein; hydrolase, protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.55A {Bacillus thuringiensis str} Length = 171

 Score = 77.1 bits (190), Expect = 1e-17
 Identities = 24/112 (21%), Positives = 46/112 (41%), Gaps = 7/112 (6%)

Query: 122 HRVGVGAFVMNNKRELLVVQENNGALKGTGVWKLPTGTIEEGEDICAAAVREVKEETGID 181
            +V V   ++ +++ LLV Q+          W LP G +E GE +  A +RE++EETG++
Sbjct: 22  MQVRVTGILIEDEKVLLVKQKVAN-----RDWSLPGGRVENGETLEEAMIREMREETGLE 76

Query: 182 TEFVEVLAFRQSHRSFFRKSDLFFVCMLRPRNFHIQKQDSEIAAAQWMQAED 233
            +  ++L       +      + F+         I    +E         + 
Sbjct: 77  VKIKKLLYVCDKPDASPSLLHITFLL--ERIEGEITLPSNEFDHNPIHDVQM 126

>1rya_A GDP-mannose mannosyl hydrolase; GDP-glucose, nudix, nudix Mg-complex; HET: GDP; 1.30A {Escherichia coli} SCOP: d.113.1.5 PDB: 2gt2_A 2gt4_A* 2i8t_A* 2i8u_A* Length = 160

 Score = 76.9 bits (189), Expect = 2e-17
 Identities = 25/146 (17%), Positives = 53/146 (36%), Gaps = 14/146 (9%)

Query: 108 WIPETADVLPANASHRVGVGAFVMNNKRELLVVQENNGALKGTGVWKLPTGTIEEGEDIC 167
           ++ +        ++  V +   V N++ E L+ +  N   +G   W +P G +++ E + 
Sbjct: 3   FLRQEDFATVVRSTPLVSLDFIVENSRGEFLLGKRTNRPAQGY--WFVPGGRVQKDETLE 60

Query: 168 AAAVREVKEETGIDTEFVE---VLAFRQSHRSFFRKSD-------LFFVCMLRPRNFHIQ 217
           AA  R    E G+            ++  +   F  +D       L F    R     + 
Sbjct: 61  AAFERLTMAELGLRLPITAGQFYGVWQHFYDDNFSGTDFTTHYVVLGFRF--RVSEEELL 118

Query: 218 KQDSEIAAAQWMQAEDYAAQPYVLKH 243
             D +    +W+ ++   A   V  +
Sbjct: 119 LPDEQHDDYRWLTSDALLASDNVHAN 144

>2jvb_A Protein PSU1, mRNA-decapping enzyme subunit 2; DCP2, mRNA decay, cytoplasm, hydrolase, manganese, metal-binding, mRNA processing; NMR {Saccharomyces cerevisiae} Length = 146

 Score = 74.5 bits (183), Expect = 7e-17
 Identities = 26/110 (23%), Positives = 43/110 (39%), Gaps = 8/110 (7%)

Query: 126 VGAFVMNNKR-ELLVVQENNGALKGTGVWKLPTGTIEEGEDICAAAVREVKEETGIDTEF 184
            GA + N    ++L+VQ           W  P G I + E+     +REVKEE G D   
Sbjct: 7   RGAAIFNENLSKILLVQGTES-----DSWSFPRGKISKDENDIDCCIREVKEEIGFDLTD 61

Query: 185 VEVLAFRQSHRSFFRKSDLFFVCMLRPRNFHIQ-KQDSEIAAAQWMQAED 233
                 +   R+   K+   F+       F+ + +  +EI   +W   + 
Sbjct: 62  YIDD-NQFIERNIQGKNYKIFLISGVSEVFNFKPQVRNEIDKIEWFDFKK 110

>4dyw_A MUTT/nudix family protein; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.50A {Burkholderia pseudomallei} Length = 157

 Score = 72.8 bits (179), Expect = 4e-16
 Identities = 27/117 (23%), Positives = 46/117 (39%), Gaps = 12/117 (10%)

Query: 123 RVGVGAFVMNNKRELLVVQENNGALKGTGVWKLPTGTIEEGEDICAAAVREVKEETGIDT 182
           RVG GA ++ + R +L+++         G W LP G ++  E +  A  RE++EE GI  
Sbjct: 29  RVGCGAAIVRDGR-ILLIKRKRA--PEAGCWGLPGGKVDWLEPVERAVCREIEEELGIAL 85

Query: 183 EFVEVLAFRQSHRSFFRKS--DLFFVCML---RPRNFHIQKQDSEIAAAQWMQAEDY 234
           E   +L       +   +      ++       PR      +     A  W   +D 
Sbjct: 86  ERATLLCVVDHIDAANGEHWVAPVYLAHAFSGEPRV----VEPDRHEALGWFALDDL 138

>2azw_A MUTT/nudix family protein; MUTT/nudix ,enterococcus faecalis, structural genomics, PSI, structure initiative; HET: 1PE; 1.90A {Enterococcus faecalis} SCOP: d.113.1.1 Length = 148

 Score = 72.5 bits (178), Expect = 5e-16
 Identities = 27/119 (22%), Positives = 41/119 (34%), Gaps = 16/119 (13%)

Query: 122 HRVGVGAFVMNNKRELLVVQENNGALKGTGVWKLPTGTIEEGEDICAAAVREVKEETGID 181
            R      V   +   +V+ +        G + LP G IE  E    A  REV EE GI 
Sbjct: 17  TRYAAYIIVSKPENNTMVLVQ-----APNGAYFLPGGEIEGTETKEEAIHREVLEELGIS 71

Query: 182 TEFVEVLA-----FRQSHR-SFFRKSDLFFVCMLRPRNFH-IQKQDSEIAAAQWMQAED 233
            E    L      F  +HR + +     F+V       +  + +         W+  E+
Sbjct: 72  VEIGCYLGEADEYFYSNHRQTAYYNPGYFYVA----NTWRQLSEPLERTNTLHWVAPEE 126

>3grn_A MUTT related protein; structural genomics, hydrolase, PSI-2, protein structure INI NEW YORK SGX research center for structural genomics; 1.70A {Methanosarcina mazei} Length = 153

 Score = 72.4 bits (178), Expect = 6e-16
 Identities = 25/112 (22%), Positives = 42/112 (37%), Gaps = 3/112 (2%)

Query: 122 HRVGVGAFVMNNKRELLVVQENNGALKGTGVWKLPTGTIEEGEDICAAAVREVKEETGID 181
           + + V A + N K E L+++ +  +    G W LP G +   E +     REV EETGI 
Sbjct: 7   YIISVYALIRNEKGEFLLLRRSENSRTNAGKWDLPGGKVNPDESLKEGVAREVWEETGIT 66

Query: 182 TEFVEVLAFRQSHRSFFRKSDLFFVCMLRPRNFHIQKQDSEIAAAQWMQAED 233
               ++        +  +   + F          + K   E     W+  E 
Sbjct: 67  MVPGDIAGQVNFELTEKKVIAIVFDG--GYVVADV-KLSYEHIEYSWVSLEK 115

>2pqv_A MUTT/nudix family protein; structu genomics, PSI-2, protein structure initiative, midwest CENT structural genomics, MCSG; 1.63A {Streptococcus pneumoniae} Length = 154

 Score = 72.0 bits (177), Expect = 8e-16
 Identities = 26/142 (18%), Positives = 54/142 (38%), Gaps = 15/142 (10%)

Query: 118 ANASHRVGVGAFVMNNKRELLVVQENNGALKGTGVWKLPTGTIEEGEDICAAAVREVKEE 177
            N    V   A ++ N + L+         K  G +    G I+  E    A VREVKEE
Sbjct: 14  DNTVFGVRATALIVQNHKLLVT--------KDKGKYYTIGGAIQVNESTEDAVVREVKEE 65

Query: 178 TGIDTEFVEVLAFRQSHRSF----FRKSDLFFVCMLRPRNFHIQKQDSEIAAAQWM---Q 230
            G+  +  ++    ++        +   +  ++  L        ++D +    +W+   +
Sbjct: 66  LGVKAQAGQLAFVVENRFEVDGVSYHNIEFHYLVDLLEDAPLTMQEDEKRQPCEWIDLDK 125

Query: 231 AEDYAAQPYVLKHQMFNYICQI 252
            ++    P  LK  + ++  Q+
Sbjct: 126 LQNIQLVPVFLKTALPDWEGQL 147

>3q1p_A Phosphohydrolase (MUTT/nudix family protein); asymmetric dimer, RNA exonuclease, CDP-CHO pyrophosphatase; 1.80A {Bacillus cereus} PDB: 3q4i_A Length = 205

 Score = 70.1 bits (172), Expect = 9e-15
 Identities = 25/111 (22%), Positives = 44/111 (39%), Gaps = 14/111 (12%)

Query: 123 RVGVGAFVMNNKRELLVVQENNGALKGTGVWKLPTGTIEEGEDICAAAVREVKEETGIDT 182
           +V + A V  N++ L V ++++G       W LP G  + G      A +EV EETG + 
Sbjct: 68  KVDIRAVVFQNEKLLFVKEKSDG------KWALPGGWADVGYTPTEVAAKEVFEETGYEV 121

Query: 183 EFVEVLAFRQSHRSFFRKS-----DLFFVCMLRPRNFHIQKQDSEIAAAQW 228
           +  ++LA     +     S      +F  C +            E    ++
Sbjct: 122 DHFKLLAIFDKEKHQPSPSATHVYKIFIGCEIIGGEKKT---SIETEEVEF 169

>3f13_A Putative nudix hydrolase family member; structural genomics, PSI-2, protein structure initiative; 1.70A {Chromobacterium violaceum} Length = 163

 Score = 66.4 bits (162), Expect = 1e-13
 Identities = 21/112 (18%), Positives = 40/112 (35%), Gaps = 15/112 (13%)

Query: 122 HRVGVGAFVMNNKRELLVVQENNGALKGTGVWKLPTGTIEEGEDICAAAVREVKEETGID 181
                 A +      L+            G + LP G    GE    A +RE++EETG+ 
Sbjct: 15  LARRATAIIEMPDGVLVTASRG-------GRYNLPGGKANRGELRSQALIREIREETGLR 67

Query: 182 TEFVEVLAFRQSHRSFFRKSDLFFVCMLRPRNFHIQKQDSEIAAAQWMQAED 233
              +  L    +  +  +     ++C+ + +     K  +EI     + + D
Sbjct: 68  INSMLYLFDHITPFNAHK----VYLCIAQGQP----KPQNEIERIALVSSPD 111

>1ktg_A Diadenosine tetraphosphate hydrolase; nudix, AMP, magnesium cluster; HET: AMP; 1.80A {Caenorhabditis elegans} SCOP: d.113.1.1 PDB: 1kt9_A* Length = 138

 Score = 64.9 bits (159), Expect = 2e-13
 Identities = 25/106 (23%), Positives = 41/106 (38%), Gaps = 10/106 (9%)

Query: 132 NNKRELLVVQENNGALKGTGVWKLPTGTIEEGEDICAAAVREVKEETGIDTEFVEVLAFR 191
             K E L++Q +         W  P G ++ GED   AA+RE KEE  I  E + +    
Sbjct: 15  AGKIEFLLLQASYPP----HHWTPPKGHVDPGEDEWQAAIRETKEEANITKEQLTIHEDC 70

Query: 192 QSHRSFFRKSDL----FFVCMLRPRNFHIQKQDSEIAAAQWMQAED 233
                +  K       +++  L   +    +   E    +W + ED
Sbjct: 71  HETLFYEAKGKPKSVKYWLAKLNNPD--DVQLSHEHQNWKWCELED 114

>1k2e_A Nudix homolog; nudix/MUTT-like fold, mixed alpha/beta, dimer, putative NUDI hydrolase, structural genomics, unknown function; 1.80A {Pyrobaculum aerophilum} SCOP: d.113.1.1 PDB: 1jrk_A 1k26_A Length = 156

 Score = 64.1 bits (156), Expect = 7e-13
 Identities = 23/120 (19%), Positives = 44/120 (36%), Gaps = 16/120 (13%)

Query: 124 VGVGAFVMNNKRELLVVQENNGALKGTGVWKLPTGTIEEGEDICAAAVREVKEETGIDTE 183
           +     ++ N + LLV +      K  GV+  P G +E  E    A  RE +EETGI  E
Sbjct: 2   IVTSGVLVENGKVLLV-KH-----KRLGVYIYPGGHVEHNETPIEAVKREFEEETGIVVE 55

Query: 184 FVEVLAFRQSHRSFFRKSDLFFVCMLRPRN----------FHIQKQDSEIAAAQWMQAED 233
            +          +  R   L  +  +              + +++   ++   +W+   +
Sbjct: 56  PIGFTYGIIDENAVERPMPLVILEEVVKYPEETHIHFDLIYLVKRVGGDLKNGEWIDVRE 115

>3o8s_A Nudix hydrolase, ADP-ribose pyrophosphatase; structural genomics, joint center for structural genomics, J protein structure initiative; 2.27A {Streptococcus suis} Length = 206

 Score = 64.4 bits (157), Expect = 1e-12
 Identities = 29/111 (26%), Positives = 49/111 (44%), Gaps = 15/111 (13%)

Query: 123 RVGVGAFVMNNKRELLVVQENNGALKGTGVWKLPTGTIEEGEDICAAAVREVKEETGIDT 182
           ++   A +    + LLV + +       G+W LP G  +  + +    V+EVKEE G+D 
Sbjct: 70  KLDTRAAIFQEDKILLVQEND-------GLWSLPGGWCDVDQSVKDNVVKEVKEEAGLDV 122

Query: 183 EFVEVLA-----FRQSHRSFFRKSDLFFVCMLRPRNFHIQKQDSEIAAAQW 228
           E   V+A          +S  R + +F +C L    F     +SE  A+ +
Sbjct: 123 EAQRVVAILDKHKNNPAKSAHRVTKVFILCRLLGGEFQP---NSETVASGF 170

>3q93_A 7,8-dihydro-8-oxoguanine triphosphatase; structural genomics, structural genomics consortium, SGC, NU MUTT-like, hydrolase, magnesium binding; 1.80A {Homo sapiens} PDB: 1iry_A 3zr0_A* 3zr1_A Length = 176

 Score = 63.2 bits (154), Expect = 2e-12
 Identities = 29/147 (19%), Positives = 53/147 (36%), Gaps = 21/147 (14%)

Query: 117 PANASHRVGVGAFVMNNKRELLVVQENNGALKGTGVWKLPTGTIEEGEDICAAAVREVKE 176
               + R+     V+  +R +L+  +  G   G G W    G ++EGE I   A RE++E
Sbjct: 19  SHMGASRLYTLVLVLQPQR-VLLGMKKRG--FGAGRWNGFGGKVQEGETIEDGARRELQE 75

Query: 177 ETGIDTE---FVEVLAFRQSHRSFFRKSDLFFVCMLRPRNFHIQKQDSEIAAAQW----- 228
           E+G+  +    V  + F            +F        +      +S+     W     
Sbjct: 76  ESGLTVDALHKVGQIVFEFVGEPELMDVHVFCT-----DSIQGTPVESDEMRPCWFQLDQ 130

Query: 229 -----MQAEDYAAQPYVLKHQMFNYIC 250
                M  +D    P +L+ + F+   
Sbjct: 131 IPFKDMWPDDSYWFPLLLQKKKFHGYF 157

>3oga_A Nucleoside triphosphatase NUDI; salmonella enterica subsp. enterica serovar typhimurium STR. unknown function; HET: PO4; 1.75A {Salmonella enterica subsp} PDB: 3n77_A Length = 165

 Score = 61.4 bits (149), Expect = 8e-12
 Identities = 18/82 (21%), Positives = 33/82 (40%)

Query: 109 IPETADVLPANASHRVGVGAFVMNNKRELLVVQENNGALKGTGVWKLPTGTIEEGEDICA 168
           +        +NA  +  +   ++ N    L+ +  +      G W L  G +E GE I  
Sbjct: 13  LGTENLYFQSNAMRQRTIVCPLIQNDGCYLLCKMADNRGVFPGQWALSGGGVEPGERIEE 72

Query: 169 AAVREVKEETGIDTEFVEVLAF 190
           A  RE++EE G      ++  +
Sbjct: 73  ALRREIREELGEQLILSDITPW 94

>3fjy_A Probable MUTT1 protein; dimer, protein structure initiative II), NYSGXRC, 11181H, structural genomics; 2.15A {Bifidobacterium adolescentis atcc 1570ORGANISM_TAXID} Length = 364

 Score = 63.7 bits (154), Expect = 8e-12
 Identities = 19/84 (22%), Positives = 31/84 (36%), Gaps = 5/84 (5%)

Query: 106 VYWIPETADVLPANASHRVGVGAFVMNNKRELLVVQENNGALKGTGVWKLPTGTIEEGED 165
           + W  +    +  + +      A    +  E+ +V            W  P G +E+ E 
Sbjct: 9   IVWRWKAGSDIANDPAIASSKSAQEQLDSIEVCIVHRPKY-----DDWSWPKGKLEQNET 63

Query: 166 ICAAAVREVKEETGIDTEFVEVLA 189
              AAVRE+ EETG   +    L 
Sbjct: 64  HRHAAVREIGEETGSPVKLGPYLC 87

>3i9x_A MUTT/nudix family protein; structural genomics, hydrolase, PSI-2, protein structure INI NEW YORK SGX research center for structural genomics; 2.20A {Listeria innocua} Length = 187

 Score = 61.7 bits (150), Expect = 8e-12
 Identities = 21/121 (17%), Positives = 38/121 (31%), Gaps = 7/121 (5%)

Query: 125 GVGAFVMNNKRELLVVQ-----ENNGALKGTGVWKLPTGTIEEGEDICAAAVREVKEETG 179
            V          +L+++              G W +P G ++E E    AA RE++EET 
Sbjct: 36  TVKELNGKPTLHILLIKRSLTNAEGKPNMEGGKWAVPGGFVDENESAEQAAERELEEETS 95

Query: 180 IDTEFVEVL-AFRQSHRS-FFRKSDLFFVCMLRPRNFHIQKQDSEIAAAQWMQAEDYAAQ 237
           +    +     F +  R          F  ++ P     +    + A        +    
Sbjct: 96  LTDIPLIPFGVFDKPGRDPRGWIISRAFYAIVPPEALEKRAAGDDAAEIGLFPMTEALEL 155

Query: 238 P 238
           P
Sbjct: 156 P 156

>2b06_A MUTT/nudix family protein; structural genomics, P protein structure initiative, midwest center for structural genomics, MCSG; 1.40A {Streptococcus pneumoniae} SCOP: d.113.1.1 Length = 155

 Score = 60.9 bits (148), Expect = 9e-12
 Identities = 19/111 (17%), Positives = 38/111 (34%), Gaps = 3/111 (2%)

Query: 123 RVGVGAFVMNNKRELLVVQENNGALKGTGVWKLPTGTIEEGEDICAAAVREVKEETGIDT 182
            +     + + + + +V+Q           +  P G +E  E    + +RE+ EETG+  
Sbjct: 8   ILTNICLIEDLETQRVVMQYRAPENNRWSGYAFPGGHVENDEAFAESVIREIYEETGLT- 66

Query: 183 EFVEVLAFRQSHRSFFRKSDLFFVCMLRPRNFHIQKQDSEIAAAQWMQAED 233
             ++                 + V   +   F    Q SE     W+Q + 
Sbjct: 67  --IQNPQLVGIKNWPLDTGGRYIVICYKATEFSGTLQSSEEGEVSWVQKDQ 115

>2fvv_A Diphosphoinositol polyphosphate phosphohydrolase 1; nudix, inositol polyphosphate metabolism, structural genomics, structural genomics consortium; HET: IHP; 1.25A {Homo sapiens} SCOP: d.113.1.1 PDB: 2q9p_A* 2duk_A 3mcf_A* Length = 194

 Score = 61.6 bits (149), Expect = 1e-11
 Identities = 23/117 (19%), Positives = 45/117 (38%), Gaps = 6/117 (5%)

Query: 117 PANASHRVGVGAFVMNNKRELLVVQENNGALKGTGVWKLPTGTIEEGEDICAAAVREVKE 176
                 R     F   ++ E+L+V  +    +    W +P G +E  E+   AAVREV E
Sbjct: 36  GDGYKKRAACLCFRSESEEEVLLVSSS----RHPDRWIVPGGGMEPEEEPSVAAVREVCE 91

Query: 177 ETGIDTEFVEVLAFRQSHRSFFRKSDLFFVCMLRPRNFHIQKQDSEIAAAQWMQAED 233
           E G+      ++   ++     +     +V ++       +   +     +W + ED
Sbjct: 92  EAGVKGTLGRLVGIFENQER--KHRTYVYVLIVTEVLEDWEDSVNIGRKREWFKIED 146

>2qjo_A Bifunctional NMN adenylyltransferase/nudix hydrol; two individual domains, hydrolase; HET: APR NAD; 2.60A {Synechocystis SP} Length = 341

 Score = 63.1 bits (153), Expect = 1e-11
 Identities = 30/176 (17%), Positives = 51/176 (28%), Gaps = 14/176 (7%)

Query: 78  PIELANLVEPAVQEGFRYHHAEPDY----LMLVYWIPETADVLPANASHRVGVGAFVMNN 133
             +  + V PA+ +  +       Y        +          A  +        V+  
Sbjct: 153 EGDYLDKVPPAIADYLQTFQKSERYIALCDEYQFLQAYKQAWATAPYAPTFITTDAVVVQ 212

Query: 134 KRELLVVQENNGALKGTGVWKLPTGTIEEGEDICAAAVREVKEETGIDTEFVEVLAFRQS 193
              +L+V+       G     LP G I++ E +    +RE+KEET +      +      
Sbjct: 213 AGHVLMVRRQAKPGLGL--IALPGGFIKQNETLVEGMLRELKEETRLKVPLPVLRGSIVD 270

Query: 194 HRSF--------FRKSDLFFVCMLRPRNFHIQKQDSEIAAAQWMQAEDYAAQPYVL 241
              F         R     +   L        K   +   A WM   D  AQ   +
Sbjct: 271 SHVFDAPGRSLRGRTITHAYFIQLPGGELPAVKGGDDAQKAWWMSLADLYAQEEQI 326

>3cng_A Nudix hydrolase; structural genomics, APC7497, PSI-2, protei structure initiative; 2.00A {Nitrosomonas europaea atcc 19718} Length = 189

 Score = 60.1 bits (146), Expect = 3e-11
 Identities = 26/112 (23%), Positives = 35/112 (31%), Gaps = 12/112 (10%)

Query: 124 VGVGAFVMNNKRELLVVQENNGALKGTGVWKLPTGTIEEGEDICAAAVREVKEETGIDTE 183
           V VG       + LL            G W LP G +E  E +   A RE  EE     E
Sbjct: 41  VIVGCIPEWENKVLLC---KRAIAPYRGKWTLPAGFMENNETLVQGAARETLEEANARVE 97

Query: 184 FVEVLAFRQSHRSFFRKS--DLFFVCMLRPRNFHIQKQDSEIAAAQWMQAED 233
             E+ A      S    S   + F   L   +F       E    +    ++
Sbjct: 98  IRELYA----VYSLPHISQVYMLFRAKLLDLDFFP---GIESLEVRLFGEQE 142

>3exq_A Nudix family hydrolase; protein structure initiative II(PSI II), NYSGXRC, 11180K, structural genomics; 2.00A {Lactobacillus brevis atcc 367} Length = 161

 Score = 59.3 bits (144), Expect = 4e-11
 Identities = 24/110 (21%), Positives = 35/110 (31%), Gaps = 4/110 (3%)

Query: 124 VGVGAFVMNNKRELLVVQENNGALKGTGVWKLPTGTIEEGEDICAAAVREVKEETGIDTE 183
           V +        + +LV  + N           P G +E GE    AA+REV EETG+   
Sbjct: 12  VTMVMVTDPETQRVLVEDKVNV--PWKAGHSFPGGHVEVGEPCATAAIREVFEETGLRLS 69

Query: 184 FVEVLAFRQSHRSFFRKSDLFFVCMLRPRNFHIQKQDSEIAAAQWMQAED 233
            V              +       + R  NF    + S      W+    
Sbjct: 70  GVTFCGT--CEWFDDDRQHRKLGLLYRASNFTGTLKASAEGQLSWLPITA 117

>2kdv_A RNA pyrophosphohydrolase; nudix family, magnesium, manganese, zinc; NMR {Escherichia coli} PDB: 2kdw_A Length = 164

 Score = 59.1 bits (144), Expect = 4e-11
 Identities = 20/67 (29%), Positives = 30/67 (44%), Gaps = 5/67 (7%)

Query: 123 RVGVGAFVMNNKRELLVVQENNGALKGTGVWKLPTGTIEEGEDICAAAVREVKEETGIDT 182
           R  VG  + N + +++          G   W+ P G I  GE    A  RE+ EE G+  
Sbjct: 8   RPNVGIVICNRQGQVMW-----ARRFGQHSWQFPQGGINPGESAEQAMYRELFEEVGLSR 62

Query: 183 EFVEVLA 189
           + V +LA
Sbjct: 63  KDVRILA 69

>3son_A Hypothetical nudix hydrolase; structural genomics, joint center for structural GENO JCSG, protein structure initiative, PSI-biology; HET: MSE; 1.71A {Listeria monocytogenes} Length = 149

 Score = 58.0 bits (140), Expect = 7e-11
 Identities = 23/121 (19%), Positives = 39/121 (32%), Gaps = 15/121 (12%)

Query: 122 HRVGVGAF-VMNNKRELLVVQENNGALKGTGVWKLPTGTIEEGEDICAAAVREVKEETGI 180
            +V V  F       +  V+   +       VW+   G  E+ E I   A RE  EE  +
Sbjct: 6   FQVLVIPFIKTEANYQFGVLHRTDA-----DVWQFVAGGGEDEEAISETAKRESIEELNL 60

Query: 181 DTEFVEVLA--------FRQSHRSFFRKSDLFFVCMLRPRNFHIQKQDSEIAAAQWMQAE 232
           D +              F  S    +   +  F   L   ++ +     E +  +W+  E
Sbjct: 61  DVDVKMYSLDSHASIPNFHFSFNKPYVVPEYCFAIDLTSCSYQV-TLSLEHSELRWVSYE 119

Query: 233 D 233
            
Sbjct: 120 S 120

>3f6a_A Hydrolase, nudix family; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.02A {Clostridium perfringens atcc 13124} Length = 159

 Score = 56.2 bits (135), Expect = 4e-10
 Identities = 24/139 (17%), Positives = 39/139 (28%), Gaps = 25/139 (17%)

Query: 119 NASHRVGVGAFVMNNKRELLVVQENNGALKGTGVWKLPTGTIEEGEDICAAAVREVKEET 178
           + +    V  F++   + LL +       K         G IE  E    A +RE KEE 
Sbjct: 2   SLNRHFTVSVFIVCKDKVLLHLH------KKAKKMLPLGGHIEVNELPEEACIREAKEEA 55

Query: 179 GIDTEFVEVLAFRQSHRSFFRKSDL------FFVCMLRPRNFHI-------------QKQ 219
           G++      +              L        +  + P + HI               +
Sbjct: 56  GLNVTLYNPIDINLKKSCDLSGEKLLINPIHTILGDVSPNHSHIDFVYYATTTSFETSPE 115

Query: 220 DSEIAAAQWMQAEDYAAQP 238
             E    +W   ED     
Sbjct: 116 IGESKILKWYSKEDLKNAH 134

>3fcm_A Hydrolase, nudix family; protein structure initiative II(PSI II), NYSGXRC, 11180J, structural genomics; 2.20A {Clostridium perfringens atcc 13124} Length = 197

 Score = 56.2 bits (135), Expect = 9e-10
 Identities = 26/166 (15%), Positives = 61/166 (36%), Gaps = 22/166 (13%)

Query: 94  RYHHAEPDYLMLVYWIPETADVL-PANASHRVGVGAFVMNNKR-ELLVVQENNGALKGTG 151
                E D  + +  + +  D+L   N    +   AF +N +R + L++           
Sbjct: 15  FNEQEERDKELFLRCLNDFHDILTRDNTIAHLTSSAFAVNKERNKFLMIHH-----NIYN 69

Query: 152 VWKLPTGTIEEGEDICAAAVREVKEETGI-----------DTEFVEVLAFRQSHRSFFRK 200
            W    G  +  +D    A++E+KEETG+             + + V    +  +     
Sbjct: 70  SWAWTGGHSDNEKDQLKVAIKELKEETGVKNPTPLLDKAFALDVLTVNGHIKRGKYVSSH 129

Query: 201 SDLFFVCMLR-PRNFHIQKQDSEIAAAQWM---QAEDYAAQPYVLK 242
             L    ++    +  +  ++ E +   W+   +   Y ++P+++ 
Sbjct: 130 LHLNLTYLIECSEDETLMLKEDENSGVMWIPFNEISKYCSEPHMIP 175

>2qjt_B Nicotinamide-nucleotide adenylyltransferase; two individual domains, hydrolase; HET: AMP; 2.30A {Francisella tularensis} PDB: 2r5w_B Length = 352

 Score = 56.2 bits (135), Expect = 3e-09
 Identities = 26/166 (15%), Positives = 50/166 (30%), Gaps = 12/166 (7%)

Query: 74  WIKLPIELANLVEPAVQEGFRYHHAEPDYLMLVYWIPETADVLPANASHRVGVGAF-VMN 132
              +      L        F       D +    ++ E   +          V    ++ 
Sbjct: 157 KQYMCSNDPKLGTYNFLTKFMDTQVYQDLVAENNYVIEYKRLWLKAPFKPNFVTVDALVI 216

Query: 133 NKRELLVVQENNGALKGTGVWKLPTGTIEEGEDICAAAVREVKEETGIDTEFVEVLAFRQ 192
               +L+VQ      K    W LP G +E  E I  A +RE+ EET I+    ++   ++
Sbjct: 217 VNDHILMVQRKAHPGKDL--WALPGGFLECDETIAQAIIRELFEETNINLTHEQLAIAKR 274

Query: 193 SHRSF---------FRKSDLFFVCMLRPRNFHIQKQDSEIAAAQWM 229
             + F            S +      +  +        +    +W+
Sbjct: 275 CEKVFDYPDRSVRGRTISHVGLFVFDQWPSLPEINAADDAKDVKWI 320

>2rrk_A ORF135, CTP pyrophosphohydrolase; NMR {Escherichia coli} Length = 140

 Score = 53.4 bits (129), Expect = 3e-09
 Identities = 22/92 (23%), Positives = 39/92 (42%), Gaps = 3/92 (3%)

Query: 117 PANASHRVGVGAFVMNNKRELLVVQENNGALKGTGVWKLPTGTIEEGEDICAAAVREVKE 176
           P  +   + V A ++    ++L+ Q    + +  G+W+   G +E  E    A VRE++E
Sbjct: 2   PLGSMKMIEVVAAIIERDGKILLAQRPAQSDQA-GLWEFAGGKVEPDESQRQALVRELRE 60

Query: 177 ETGIDTEFVEVLAFRQSHRSFFRKSDL-FFVC 207
           E GI+    E +A         R   L  +  
Sbjct: 61  ELGIEATVGEYVASH-QREVSGRIIHLHAWHV 91

>3fk9_A Mutator MUTT protein; structural genomics, hydrolase, PSI-2, protein structure initiative; 2.50A {Bacillus halodurans} Length = 188

 Score = 54.3 bits (131), Expect = 3e-09
 Identities = 25/113 (22%), Positives = 40/113 (35%), Gaps = 14/113 (12%)

Query: 126 VGAFVMNNKRELLVVQENNGALKGTGVWKLPTGTIEEGEDICAAAVREVKEETGIDTEFV 185
               V+++ + LL+ Q+        G W  P G +E GE I     RE  EETGI  +  
Sbjct: 7   TNCIVVDHDQVLLL-QKPR-----RGWWVAPGGKMEAGESILETVKREYWEETGITVKNP 60

Query: 186 EVLA-----FRQSHRSFFRKSDLFFVCMLRPRNFHIQKQDSEIAAAQWMQAED 233
           E+            +         F          + KQ  E    +W + ++
Sbjct: 61  ELKGIFSMVIFDEGKIVSEWMLFTFKA--TEHEGEMLKQSPE-GKLEWKKKDE 110

>3ees_A Probable pyrophosphohydrolase; nudix, RNA pyrophosphohydrolase; 1.90A {Bdellovibrio bacteriovorus} PDB: 3eeu_A 3ef5_A* 3ffu_A* Length = 153

 Score = 53.0 bits (128), Expect = 5e-09
 Identities = 23/74 (31%), Positives = 31/74 (41%), Gaps = 1/74 (1%)

Query: 117 PANASHRVGVGAFVMNNKRELLVVQENNGALKGTGVWKLPTGTIEEGEDICAAAVREVKE 176
                H + V A  +    ++LV Q         G W+ P G IE GE    A  RE+ E
Sbjct: 15  KIRKGHWIPVVAGFLRKDGKILVGQRPENNSLA-GQWEFPGGKIENGETPEEALARELNE 73

Query: 177 ETGIDTEFVEVLAF 190
           E GI+ E  E+   
Sbjct: 74  ELGIEAEVGELKLA 87

>1f3y_A Diadenosine 5',5'''-P1,P4-tetraphosphate hydrolase; enzyme,mixed 4-stranded beta sheet, 2-stranded antiparallel sheet; NMR {Lupinus angustifolius} SCOP: d.113.1.1 PDB: 1jkn_A* Length = 165

 Score = 53.0 bits (128), Expect = 6e-09
 Identities = 25/67 (37%), Positives = 39/67 (58%), Gaps = 6/67 (8%)

Query: 123 RVGVGAFVMNNKRELLVVQENNGALKGTGVWKLPTGTIEEGEDICAAAVREVKEETGIDT 182
           R  VG  +MNN +++      +        W++P G I+EGED   AA+RE++EETG+ +
Sbjct: 14  RRNVGICLMNNDKKIFAASRLDIP----DAWQMPQGGIDEGEDPRNAAIRELREETGVTS 69

Query: 183 EFVEVLA 189
              EV+A
Sbjct: 70  --AEVIA 74

>3hhj_A Mutator MUTT protein; niaid, ssgcid, decode, UW, SBRI, infectious diseases, hydrol structural genomics; 2.10A {Bartonella henselae} Length = 158

 Score = 52.8 bits (127), Expect = 8e-09
 Identities = 22/100 (22%), Positives = 44/100 (44%), Gaps = 3/100 (3%)

Query: 110 PETADVLPANASHRVGVGAFVMNNKRELLVVQENNGALKGTGVWKLPTGTIEEGEDICAA 169
            +    +P  +S  + V   +++    +L+ Q   G     G+W+ P G +E+GE   A+
Sbjct: 16  TQGPGSMPIKSSLLIVVACALLDQDNRVLLTQRPEGKSLA-GLWEFPGGKVEQGETPEAS 74

Query: 170 AVREVKEETGIDTEFVEVLAFRQ-SHRSFFRKSDL-FFVC 207
            +RE++EE G+  +   +      SH        +  + C
Sbjct: 75  LIRELEEELGVHVQADNLFPLTFASHGYETFHLLMPLYFC 114

>2o1c_A DATP pyrophosphohydrolase; nudix NTP hydrolase NTP pyrophosphohydrolase MUTT dihydroneo triphosphate pyrophosphohydrolase folate biosynthesis; 1.80A {Escherichia coli} PDB: 2o5w_A Length = 150

 Score = 52.2 bits (125), Expect = 1e-08
 Identities = 18/65 (27%), Positives = 31/65 (47%), Gaps = 3/65 (4%)

Query: 124 VGVGAFVMNNKRELLVVQENNGALKGTGVWKLPTGTIEEGEDICAAAVREVKEETGIDTE 183
           V +   +     + +++ +          W+  TG++EEGE    AA+REVKEE  ID  
Sbjct: 10  VSILVVIYAQDTKRVLMLQ---RRDDPDFWQSVTGSVEEGETAPQAAMREVKEEVTIDVV 66

Query: 184 FVEVL 188
             ++ 
Sbjct: 67  AEQLT 71

>1mut_A MUTT, nucleoside triphosphate pyrophosphohydrolase; DNA repair; NMR {Escherichia coli} SCOP: d.113.1.1 PDB: 1ppx_A* 1pun_A* 1puq_A* 1pus_A* 1tum_A* 3a6s_A* 3a6t_A* 3a6u_A* 3a6v_A* Length = 129

 Score = 50.6 bits (122), Expect = 2e-08
 Identities = 19/68 (27%), Positives = 30/68 (44%), Gaps = 2/68 (2%)

Query: 123 RVGVGAFVMNNKRELLVVQENNGALKGTGVWKLPTGTIEEGEDICAAAVREVKEETGIDT 182
           ++ VG  + N   E+ + +    A       + P G IE GE    A VRE++EE GI  
Sbjct: 5   QIAVGI-IRNENNEIFITRRAADAHMA-NKLEFPGGKIEMGETPEQAVVRELQEEVGITP 62

Query: 183 EFVEVLAF 190
           +   +   
Sbjct: 63  QHFSLFEK 70

>2fml_A MUTT/nudix family protein; structural genomics, PSI, protein structure initiative, midwest center structural genomics, MCSG; 2.26A {Enterococcus faecalis} SCOP: a.4.5.68 d.113.1.6 Length = 273

 Score = 52.7 bits (126), Expect = 2e-08
 Identities = 21/137 (15%), Positives = 46/137 (33%), Gaps = 9/137 (6%)

Query: 132 NNKRELLVVQENNGALKGTGVWKLPTGTIEEGEDICAAAVREVKEETGIDTE---FVEVL 188
            ++ ++L++Q      + +  W LP G +   E    + +RE KEETG+        ++ 
Sbjct: 53  ADQLKVLLIQRKGHPFRNS--WALPGGFVNRNESTEDSVLRETKEETGVVISQENIEQLH 110

Query: 189 AFRQSHRS-FFRKSDLFFVCMLRPRNFHIQKQDSEIAAAQWMQAEDYAAQPYVLKHQMFN 247
           +F +  R        + ++  +            E     W   E +     +    +  
Sbjct: 111 SFSRPDRDPRGWVVTVSYLAFIGEEPLIAGDDAKE---VHWFNLERHGQHITLSHEDVEI 167

Query: 248 YICQICLTKSEKEYAGF 264
            +         K+   F
Sbjct: 168 TLDLKTAASLGKDTLAF 184

>1q27_A Putative nudix hydrolase DR0079; radiation resistance; NMR {Deinococcus radiodurans} SCOP: d.113.1.2 PDB: 2o5f_A Length = 171

 Score = 50.8 bits (122), Expect = 4e-08
 Identities = 23/116 (19%), Positives = 44/116 (37%), Gaps = 3/116 (2%)

Query: 122 HRVGVGAFVMNNKRELLVVQENNGALKGTGVWKLPTGT-IEEGEDICAAAVREVKEETGI 180
            RV V AF+ N++ +L + + +           +  G  ++ GE    A  RE +EE  +
Sbjct: 34  VRV-VNAFLRNSQGQLWIPRRSPSKSLFPNALDVSVGGAVQSGETYEEAFRREAREELNV 92

Query: 181 DTEFVEVLAFRQSHRSFFRKSDLFFVCMLRPRNFHIQKQDSEIAAAQWMQAEDYAA 236
           + + +               S    V  LR  +       ++I+  +W+  E   A
Sbjct: 93  EIDALSWRPLASFSPFQTTLSSFMCVYELR-SDATPIFNPNDISGGEWLTPEHLLA 147

>2yyh_A MUTT domain, 8-OXO-DGTPase domain; nudix family protein, structural genomics, NPPSFA, national on protein structural and functional analyses; 1.80A {Aquifex aeolicus} Length = 139

 Score = 50.0 bits (120), Expect = 5e-08
 Identities = 18/85 (21%), Positives = 36/85 (42%), Gaps = 6/85 (7%)

Query: 151 GVWKLPTGTIEEGEDICAAAVREVKEETGIDTEFVEVLA-FRQSHRS-FFRKSDLFFVCM 208
               LP G +E GE +  AA RE++EETG++    +++  +    R        + ++  
Sbjct: 37  VGLALPGGFVEVGERVEEAAAREMREETGLEVRLHKLMGVYSDPERDPRAHVVSVVWIGD 96

Query: 209 LRPRNFHIQKQDSEIAAAQWMQAED 233
            +       K  S+    +  + E+
Sbjct: 97  AQGE----PKAGSDAKKVKVYRLEE 117

>3r03_A Nudix hydrolase; structural genomics, PSI2, protein structure INIT NEW YORK SGX research center for structural genomics, nysgx; HET: ADP; 2.49A {Rhodospirillum rubrum} Length = 144

 Score = 50.0 bits (120), Expect = 6e-08
 Identities = 21/58 (36%), Positives = 31/58 (53%), Gaps = 1/58 (1%)

Query: 126 VGAFVMNNKRELLVVQENNGALKGTGVWKLPTGTIEEGEDICAAAVREVKEETGIDTE 183
             A +++    +L+ Q   G     G+W+ P G +E GE   AA VRE+ EE G+DT 
Sbjct: 11  TAAALIDPDGRVLLAQRPPGKSLA-GLWEFPGGKLEPGETPEAALVRELAEELGVDTR 67

>3gwy_A Putative CTP pyrophosphohydrolase; structural genomics, PSI-2, protein structure INI NEW YORK SGX research center for structural genomics; 2.00A {Bacteroides fragilis} Length = 140

 Score = 48.0 bits (115), Expect = 2e-07
 Identities = 21/69 (30%), Positives = 29/69 (42%), Gaps = 1/69 (1%)

Query: 123 RVGVGAFVMNNKRELLVVQENNGALKGT-GVWKLPTGTIEEGEDICAAAVREVKEETGID 181
            + V A V+    + L VQ        T   ++ P G +EEGE +  A  RE+ EE    
Sbjct: 5   SIEVVAAVIRLGEKYLCVQRGQTKFSYTSFRYEFPGGKVEEGESLQEALQREIMEEMDYV 64

Query: 182 TEFVEVLAF 190
            E  E L  
Sbjct: 65  IEVGEKLLT 73

>1nqz_A COA pyrophosphatase (MUTT/nudix family protein); D.radiodurans, hydrolase; 1.70A {Deinococcus radiodurans} SCOP: d.113.1.1 PDB: 1nqy_A Length = 194

 Score = 48.5 bits (116), Expect = 3e-07
 Identities = 17/74 (22%), Positives = 29/74 (39%), Gaps = 8/74 (10%)

Query: 155 LPTGTIEEGEDICAAAVREVKEETGIDTEFVEVLAFRQSHRSFFRKSDLF----FVCMLR 210
            P G+++ GE    AA+RE +EE  +D   V +L       +       F     +  + 
Sbjct: 68  FPGGSLDAGETPTQAALREAQEEVALDPAAVTLLGELDDVFTPVG----FHVTPVLGRIA 123

Query: 211 PRNFHIQKQDSEIA 224
           P      +   E+A
Sbjct: 124 PEALDTLRVTPEVA 137

>3gz5_A MUTT/nudix family protein; DNA binding protein, nudix domain, WHTH domain; 2.20A {Shewanella oneidensis} PDB: 3gz6_A* 3gz8_A* Length = 240

 Score = 49.3 bits (117), Expect = 3e-07
 Identities = 25/140 (17%), Positives = 51/140 (36%), Gaps = 5/140 (3%)

Query: 132 NNKRELLVVQENNGALKGTGVWKLPTGTIEE--GEDICAAAVREVKEETGIDTEFVEVLA 189
           + + ++L+VQ +N    G   W LP G I+E   E +    +R++ E+T +   ++E L 
Sbjct: 34  DQQLKVLLVQRSNHPFLGL--WGLPGGFIDETCDESLEQTVLRKLAEKTAVVPPYIEQLC 91

Query: 190 FRQSHRSFFRKSDLFFVCMLRPRNFHIQKQDSEIAAAQWMQAEDYAAQPYVL-KHQMFNY 248
              ++    R   +             Q Q + ++  +W    D    P      Q+   
Sbjct: 92  TVGNNSRDARGWSVTVCYTALMSYQACQIQIASVSDVKWWPLADVLQMPLAFDHLQLIEQ 151

Query: 249 ICQICLTKSEKEYAGFSPMP 268
             +    K+         + 
Sbjct: 152 ARERLTQKALYSLVPGFALS 171

>2fkb_A Putative nudix hydrolase YFCD; putative protein, MAD, structural genomics, escherichia coli putative nudix hydrolase, PSI; HET: MSE; 2.00A {Escherichia coli K12} SCOP: d.113.1.2 Length = 180

 Score = 47.4 bits (113), Expect = 7e-07
 Identities = 27/128 (21%), Positives = 47/128 (36%), Gaps = 7/128 (5%)

Query: 113 ADVLPANASHRVGVGAFVMNNKRELLVVQENNGALKGTGVWKLPTGT-IEEGEDICAAAV 171
             +      HR      V +   ++LV +         G+     G  ++  E +  +A 
Sbjct: 28  EQMRAQCLRHRA-TYIVVHDGMGKILVQRRTETKDFLPGMLDATAGGVVQADEQLLESAR 86

Query: 172 REVKEETGI-DTEFVEVLAFRQSHRSFFRKSDLFFVCMLRPRNFHIQKQDSEIAAAQWMQ 230
           RE +EE GI    F E   F    ++      LF      P  F +Q+   E++   W+ 
Sbjct: 87  REAEEELGIAGVPFAEHGQFYFEDKNCRVWGALFSCVSHGP--FALQE--DEVSEVCWLT 142

Query: 231 AEDYAAQP 238
            E+  A+ 
Sbjct: 143 PEEITARC 150

>1vhz_A ADP compounds hydrolase NUDE; structural genomics; HET: APR; 2.32A {Escherichia coli} SCOP: d.113.1.1 PDB: 1vhg_A* Length = 198

 Score = 46.5 bits (111), Expect = 2e-06
 Identities = 17/69 (24%), Positives = 29/69 (42%), Gaps = 2/69 (2%)

Query: 121 SHRVGVGAFVMNNKRELLVVQENNGALKGTGVWKLPTGTIEEGEDICAAAVREVKEETGI 180
           ++R  V    + +   +L+ +   G    +       G I+ GE +  AA RE+KEE G 
Sbjct: 47  TNREAVMIVPIVDDHLILIREYAVGT--ESYELGFSKGLIDPGESVYEAANRELKEEVGF 104

Query: 181 DTEFVEVLA 189
               +  L 
Sbjct: 105 GANDLTFLK 113

>2dsc_A ADP-sugar pyrophosphatase; nudix domain, ADPR, ADP-ribose pyrophosphatase, NUDT5, hydrolase; HET: APR; 2.00A {Homo sapiens} PDB: 2dsd_A* 3bm4_A* 2dsb_A 3aca_A* 3ac9_A* 3l85_A* Length = 212

 Score = 45.5 bits (108), Expect = 4e-06
 Identities = 19/67 (28%), Positives = 33/67 (49%), Gaps = 3/67 (4%)

Query: 124 VGVGAFVMNN--KRELLVVQENNGALKGTGVWKLPTGTIEEGEDICAAAVREVKEETGID 181
           V V   +        +++V++    + G    + P G I++GE   AAA+RE++EETG  
Sbjct: 64  VAVIPVLQRTLHYECIVLVKQFRPPMGGY-CIEFPAGLIDDGETPEAAALRELEEETGYK 122

Query: 182 TEFVEVL 188
            +  E  
Sbjct: 123 GDIAECS 129

>1v8y_A ADP-ribose pyrophosphatase; nudix motif, loop-helix-loop, MUTT family, riken structural genomics/proteomics initiative, RSGI; HET: APR; 1.65A {Thermus thermophilus} SCOP: d.113.1.1 PDB: 1v8v_A* 1v8n_A 1v8l_A* 1v8m_A* 1v8i_A 1v8r_A* 1v8s_A* 1v8t_A* 1v8w_A 1v8u_A Length = 170

 Score = 44.9 bits (107), Expect = 4e-06
 Identities = 22/72 (30%), Positives = 33/72 (45%), Gaps = 2/72 (2%)

Query: 122 HRVGVGAFVMNNKRELLVVQENNGALKGTGVWKLPTGTIEEGEDICAAAVREVKEETGID 181
           H+  V    +   R L V Q       G    ++P G IE GED   AA RE+ E+TG+ 
Sbjct: 33  HKPAVAVIALREGRMLFVRQMRPAV--GLAPLEIPAGLIEPGEDPLEAARRELAEQTGLS 90

Query: 182 TEFVEVLAFRQS 193
            +   + ++  S
Sbjct: 91  GDLTYLFSYFVS 102

>3dup_A MUTT/nudix family protein; nudix superfamily hydrolase, hydrolase 3 family, structural protein structure initiative, PSI; HET: MSE; 1.80A {Rhodospirillum rubrum atcc 11170} Length = 300

 Score = 45.8 bits (108), Expect = 6e-06
 Identities = 15/94 (15%), Positives = 24/94 (25%), Gaps = 7/94 (7%)

Query: 151 GVW-KLPTGTIEEGEDICAAAVREVKEETGIDTEFVEVLAFRQSHRSFFR-----KSDLF 204
           G    +  G       +    ++E  EE  +            +           K D  
Sbjct: 149 GKLDNMVAGGQPADLSLRQNLIKECAEEADLPEALARQAIPVGAITYCMESPAGIKPDTL 208

Query: 205 FVCMLR-PRNFHIQKQDSEIAAAQWMQAEDYAAQ 237
           F+  L  P +F     D E+A      A      
Sbjct: 209 FLYDLALPEDFRPHNTDGEMADFMLWPAAKVVEA 242

>2w4e_A MUTT/nudix family protein; ADP-ribose pyrophosphatase, hydrolase; 2.00A {Deinococcus radiodurans} Length = 145

 Score = 43.7 bits (104), Expect = 1e-05
 Identities = 18/68 (26%), Positives = 33/68 (48%), Gaps = 1/68 (1%)

Query: 122 HRVGVGAFVMNNKRELLVVQENNGALKGTGVWKLPTGTIEEGEDICAAAVREVKEETGID 181
               V    +  + E +++++    L+ T + ++  G +E+GED+ AAA RE+ EE G  
Sbjct: 4   GPRAVFILPVTAQGEAVLIRQFRYPLRAT-ITEIVAGGVEKGEDLGAAAARELLEEVGGA 62

Query: 182 TEFVEVLA 189
                 L 
Sbjct: 63  ASEWVPLP 70

>2fb1_A Conserved hypothetical protein; structural genomics, PSI, protein STRU initiative, midwest center for structural genomics, MCSG; 2.50A {Bacteroides thetaiotaomicron} SCOP: a.4.5.68 d.113.1.6 Length = 226

 Score = 43.9 bits (103), Expect = 2e-05
 Identities = 17/75 (22%), Positives = 36/75 (48%), Gaps = 5/75 (6%)

Query: 117 PANASHRVGVGAFVM---NNKRELLVVQENNGALKGTGVWKLPTGTIEEGEDICAAAVRE 173
            +N +  +G+   +      +  LL+++ N     G   W L  G +++ E +  AA R 
Sbjct: 7   SSNPTFYLGIDCIIFGFNEGEISLLLLKRNFEPAMGE--WSLMGGFVQKDESVDDAAKRV 64

Query: 174 VKEETGIDTEFVEVL 188
           + E TG++  ++E +
Sbjct: 65  LAELTGLENVYMEQV 79

>2yvp_A NDX2, MUTT/nudix family protein; nudix protein, ADP-ribose, FAD, hydrol structural genomics, NPPSFA; HET: RBY; 1.66A {Thermus thermophilus} PDB: 2yvn_A 2yvm_A* 2yvo_A* Length = 182

 Score = 43.4 bits (103), Expect = 2e-05
 Identities = 15/37 (40%), Positives = 23/37 (62%)

Query: 153 WKLPTGTIEEGEDICAAAVREVKEETGIDTEFVEVLA 189
            ++P G ++EGE   AAA RE++EE G + E +  L 
Sbjct: 70  LEVPAGKVDEGETPEAAARRELREEVGAEAETLIPLP 106

>1hzt_A Isopentenyl diphosphate delta-isomerase; dimethylallyl, isoprenoids; 1.45A {Escherichia coli} SCOP: d.113.1.2 PDB: 1hx3_A 1r67_A 1x84_A* 1x83_A* 1ppv_A* 1nfz_A* 1nfs_A* 1ppw_A* 1pvf_A 2veh_A* 2vej_A 2vnp_A* 2vnq_A 2g74_A 2g73_A* 2b2k_A 1i9a_A 1q54_A* 1ow2_A* 3hyq_A* Length = 190

 Score = 42.8 bits (101), Expect = 3e-05
 Identities = 25/123 (20%), Positives = 41/123 (33%), Gaps = 13/123 (10%)

Query: 122 HRVGVGAFVMNNKRELLVVQENNGALKGTGVWKLPT-GTIEEGEDICAAAVREVKEETGI 180
           H     +++ N K +LLV +         GVW     G  + GE    A +R  + E G+
Sbjct: 32  HLA-FSSWLFNAKGQLLVTRRALSKKAWPGVWTNSVCGHPQLGESNEDAVIRRCRYELGV 90

Query: 181 DTEFVEVLAFRQSHRSFFRK-------SDLFFVCMLRPRNFHIQKQDSEIAAAQWMQAED 233
           +    E +     +R+             +F           +Q  D E+   QW    D
Sbjct: 91  EITPPESIYPDFRYRATDPSGIVENEVCPVFAARTTSA----LQINDDEVMDYQWCDLAD 146

Query: 234 YAA 236
              
Sbjct: 147 VLH 149

>1mk1_A ADPR pyrophosphatase; nudix hydrolase, adprase, adenosine DI ribose, RV1700, hydrolase; HET: APR; 2.00A {Mycobacterium tuberculosis} SCOP: d.113.1.1 PDB: 1mp2_A 1mqe_A* 1mqw_A* 1mr2_A* Length = 207

 Score = 41.1 bits (97), Expect = 1e-04
 Identities = 18/69 (26%), Positives = 31/69 (44%), Gaps = 2/69 (2%)

Query: 122 HRVGVGAFVMNNKRELLVVQENNGALKGTGVWKLPTGTIE-EGEDICAAAVREVKEETGI 180
           H   V    M++   + +V +         +W+LP G ++  GE     A RE++EE G+
Sbjct: 42  HFGAVAIVAMDDNGNIPMVYQYRHTYGRR-LWELPAGLLDVAGEPPHLTAARELREEVGL 100

Query: 181 DTEFVEVLA 189
                +VL 
Sbjct: 101 QASTWQVLV 109

>1q33_A Pyrophosphatase, ADP-ribose pyrophosphatase; nudix fold, hydrolase; HET: BGC; 1.81A {Homo sapiens} SCOP: d.113.1.1 PDB: 1qvj_A* Length = 292

 Score = 40.6 bits (94), Expect = 3e-04
 Identities = 18/86 (20%), Positives = 30/86 (34%), Gaps = 9/86 (10%)

Query: 132 NNKRELLVVQENNGALKGTGVWKLPTGTIEEGEDICAAAVREVKEETGIDTE--FVEVLA 189
            +  + + ++  +      G W +P G ++ GE I A   RE  EE     +    E   
Sbjct: 136 KHILQFVAIKRKD-----CGEWAIPGGMVDPGEKISATLKREFGEEALNSLQKTSAEKRE 190

Query: 190 FRQSHRSFFRKSDLFFVCMLR--PRN 213
             +     F +  L         PRN
Sbjct: 191 IEEKLHKLFSQDHLVIYKGYVDDPRN 216

>1vk6_A NADH pyrophosphatase; 1790429, structural genomics, JCSG, PS protein structure initiative, joint center for structural G hydrolase; HET: MSE; 2.20A {Escherichia coli} SCOP: d.113.1.4 d.113.1.4 g.41.14.1 PDB: 2gb5_A Length = 269

 Score = 39.7 bits (93), Expect = 6e-04
 Identities = 23/86 (26%), Positives = 33/86 (38%), Gaps = 14/86 (16%)

Query: 158 GTIEEGEDICAAAVREVKEETGIDTEFVEVLA-----FRQSHRSFFRKSDLFFVCMLRPR 212
           G +E GE +  A  REV EE+GI  + +  +      F QS         L    M    
Sbjct: 171 GFVEVGETLEQAVAREVMEESGIKVKNLRYVTSQPWPFPQS---------LMTAFMAEYD 221

Query: 213 NFHIQKQDSEIAAAQWMQAEDYAAQP 238
           +  I     E+  A W + +D    P
Sbjct: 222 SGDIVIDPKELLEANWYRYDDLPLLP 247

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	275
3fxt_A	113	Nucleoside diphosphate-linked moiety X motif 6; nu	99.95
3grn_A	153	MUTT related protein; structural genomics, hydrola	99.88
3i7u_A	134	AP4A hydrolase; nudix protein, diadenosine polypho	99.88
2w4e_A	145	MUTT/nudix family protein; ADP-ribose pyrophosphat	99.87
3gwy_A	140	Putative CTP pyrophosphohydrolase; structural geno	99.87
3h95_A	199	Nucleoside diphosphate-linked moiety X motif 6; NU	99.87
1vcd_A	126	NDX1; nudix protein, diadenosine polyphosphate, AP	99.87
3hhj_A	158	Mutator MUTT protein; niaid, ssgcid, decode, UW, S	99.87
1v8y_A	170	ADP-ribose pyrophosphatase; nudix motif, loop-heli	99.86
3ees_A	153	Probable pyrophosphohydrolase; nudix, RNA pyrophos	99.86
4dyw_A	157	MUTT/nudix family protein; structural genomics, ni	99.86
3r03_A	144	Nudix hydrolase; structural genomics, PSI2, protei	99.86
3gg6_A	156	Nudix motif 18, nucleoside diphosphate-linked moie	99.86
2rrk_A	140	ORF135, CTP pyrophosphohydrolase; NMR {Escherichia	99.85
1rya_A	160	GDP-mannose mannosyl hydrolase; GDP-glucose, nudix	99.85
2fkb_A	180	Putative nudix hydrolase YFCD; putative protein, M	99.85
3u53_A	155	BIS(5'-nucleosyl)-tetraphosphatase [asymmetrical];	99.85
2pbt_A	134	AP4A hydrolase; nudix protein, diadenosine polypho	99.85
1ktg_A	138	Diadenosine tetraphosphate hydrolase; nudix, AMP,	99.85
3exq_A	161	Nudix family hydrolase; protein structure initiati	99.85
3id9_A	171	MUTT/nudix family protein; hydrolase, protein stru	99.85
1f3y_A	165	Diadenosine 5',5'''-P1,P4-tetraphosphate hydrolase	99.85
2yvp_A	182	NDX2, MUTT/nudix family protein; nudix protein, AD	99.85
1mk1_A	207	ADPR pyrophosphatase; nudix hydrolase, adprase, ad	99.85
2b0v_A	153	Nudix hydrolase; structural genomics, PSI, protein	99.84
2fb1_A	226	Conserved hypothetical protein; structural genomic	99.84
3oga_A	165	Nucleoside triphosphatase NUDI; salmonella enteric	99.84
1vhz_A	198	ADP compounds hydrolase NUDE; structural genomics;	99.84
2kdv_A	164	RNA pyrophosphohydrolase; nudix family, magnesium,	99.84
1sjy_A	159	MUTT/nudix family protein; nudix fold, alpha-beta-	99.84
3son_A	149	Hypothetical nudix hydrolase; structural genomics,	99.84
2yyh_A	139	MUTT domain, 8-OXO-DGTPase domain; nudix family pr	99.83
3eds_A	153	MUTT/nudix family protein; MUT/nudix protein, prot	99.83
3q1p_A	205	Phosphohydrolase (MUTT/nudix family protein); asym	99.83
3shd_A	153	Phosphatase NUDJ; nudix fold, nudix motif, hydrola	99.83
1nqz_A	194	COA pyrophosphatase (MUTT/nudix family protein); D	99.83
3i9x_A	187	MUTT/nudix family protein; structural genomics, hy	99.83
1g0s_A	209	Hypothetical 23.7 kDa protein in ICC-TOLC intergen	99.83
3cng_A	189	Nudix hydrolase; structural genomics, APC7497, PSI	99.83
3f6a_A	159	Hydrolase, nudix family; protein structure initiat	99.83
2o1c_A	150	DATP pyrophosphohydrolase; nudix NTP hydrolase NTP	99.82
3q93_A	176	7,8-dihydro-8-oxoguanine triphosphatase; structura	99.82
2dsc_A	212	ADP-sugar pyrophosphatase; nudix domain, ADPR, ADP	99.81
1vk6_A	269	NADH pyrophosphatase; 1790429, structural genomics	99.81
3fcm_A	197	Hydrolase, nudix family; protein structure initiat	99.81
3gz5_A	240	MUTT/nudix family protein; DNA binding protein, nu	99.81
1q27_A	171	Putative nudix hydrolase DR0079; radiation resista	99.81
2azw_A	148	MUTT/nudix family protein; MUTT/nudix ,enterococcu	99.81
2pqv_A	154	MUTT/nudix family protein; structu genomics, PSI-2	99.81
3o8s_A	206	Nudix hydrolase, ADP-ribose pyrophosphatase; struc	99.81
3q91_A	218	Uridine diphosphate glucose pyrophosphatase; struc	99.81
1x51_A	155	A/G-specific adenine DNA glycosylase; nudix domain	99.8
1mut_A	129	MUTT, nucleoside triphosphate pyrophosphohydrolase	99.8
3o6z_A	191	GDP-mannose pyrophosphatase NUDK; nudix, hydrolase	99.8
2a6t_A	271	SPAC19A8.12; alpha/beta/alpha, RNA binding protein	99.8
2b06_A	155	MUTT/nudix family protein; structural genomics, P	99.8
2jvb_A	146	Protein PSU1, mRNA-decapping enzyme subunit 2; DCP	99.8
1hzt_A	190	Isopentenyl diphosphate delta-isomerase; dimethyla	99.79
2fvv_A	194	Diphosphoinositol polyphosphate phosphohydrolase 1	99.79
3fk9_A	188	Mutator MUTT protein; structural genomics, hydrola	99.79
1k2e_A	156	Nudix homolog; nudix/MUTT-like fold, mixed alpha/b	99.79
3f13_A	163	Putative nudix hydrolase family member; structural	99.77
3e57_A	211	Uncharacterized protein TM1382; structural genomic	99.75
2fml_A	273	MUTT/nudix family protein; structural genomics, PS	99.74
2qjo_A	341	Bifunctional NMN adenylyltransferase/nudix hydrol;	99.74
2qjt_B	352	Nicotinamide-nucleotide adenylyltransferase; two i	99.74
3fsp_A	369	A/G-specific adenine glycosylase; protein-DNA comp	99.72
3fjy_A	364	Probable MUTT1 protein; dimer, protein structure i	99.71
2dho_A	235	Isopentenyl-diphosphate delta-isomerase 1; alpha/b	99.7
2pny_A	246	Isopentenyl-diphosphate delta-isomerase 2; caroten	99.69
1u20_A	212	U8 snoRNA-binding protein X29; modified nudix hydr	99.62
3dup_A	300	MUTT/nudix family protein; nudix superfamily hydro	99.53
1q33_A	292	Pyrophosphatase, ADP-ribose pyrophosphatase; nudix	99.53
3qsj_A	232	Nudix hydrolase; structural genomics, PSI-biology,	99.47
2xsq_A	217	U8 snoRNA-decapping enzyme; hydrolase, mRNA decapp	99.42
3rh7_A	321	Hypothetical oxidoreductase; FMN-binding split bar	99.39
3kvh_A	214	Protein syndesmos; NUDT16-like, NUDT16L1, nudix, R	99.07
3bho_A	208	Cleavage and polyadenylation specificity factor su	99.02

>3fxt_A Nucleoside diphosphate-linked moiety X motif 6; nudix, NUDT6, GFG, FGF2AS, antisense basic fibroblast growth FGF-2 regulation, hydrolase; 2.30A {Homo sapiens}

Probab=99.95  E-value=9.1e-28  Score=181.06  Aligned_cols=97  Identities=30%  Similarity=0.585  Sum_probs=81.8

Q ss_pred             hcCCCCCCCcCcccceeecccCCcEEEeCC-----CCCChHHHHHHHHHHHHHHHHhCCeeEEEEccccccccchHHHhc
Q 039665           17 QNMMPEDGVRCPELLTAVGDLHGGVTVDMK-----KPMDSKVFSSRLRASLSLWRQQGKRGVWIKLPIELANLVEPAVQE   91 (275)
Q Consensus        17 ~~~~~~~~~~~~~~~~~~~d~~~g~~v~~~-----~~~~~~~f~~~l~~~l~~w~~~~~~~vW~~~~~~~~~l~~~~~~~   91 (275)
                      .+.-.|+.++++.+|+|+.||||||+|++.     .+.|+++|...|+.||.+||.+|+++|||+||+.++++++++++.
T Consensus        11 ~~~~~~~~~~~~~~l~g~~DrygGV~Vd~~~l~~~~~~d~~~F~~~L~~SL~~Wr~~gk~~IWlklpi~~s~lIp~a~~~   90 (113)
T 3fxt_A           11 VDLGTENLYFQSMDLQGELDRFGGISVRLARLDALDRLDAAAFQKGLQAAVQQWRSEGRTAVWLHIPILQSRFIAPAASL   90 (113)
T ss_dssp             ----------CCCCCCCEECTTSCEEEEHHHHTTTSCBCHHHHHHHHHHHHHHHHHTTCCEEEEEEEGGGGGGHHHHHHT
T ss_pred             ccccccccccccccccCCccCcCCEEEeCCccCCcCcCCHHHHHHHHHHHHHHHHHcCCeeEEEEcCHHHhhhHHHHHHc
Confidence            345568889999999999999999999974     344999999999999999999999999999999999999999999


Q ss_pred             CceeccCCCCeeeEEeecCCCc
Q 039665           92 GFRYHHAEPDYLMLVYWIPETA  113 (275)
Q Consensus        92 gf~~~~~~~~~~~l~~wl~~~~  113 (275)
                      ||.||||++||+||++|||+.+
T Consensus        91 GF~fHHAe~dylmL~~WLpe~p  112 (113)
T 3fxt_A           91 GFCFHHAESDSSTLTLWLREGP  112 (113)
T ss_dssp             TCEEEEEEBTEEEEEEECCC--
T ss_pred             CceeecCCCCeEEEEEecCcCC
Confidence            9999999999999999999875

>3grn_A MUTT related protein; structural genomics, hydrolase, PSI-2, protein structure INI NEW YORK SGX research center for structural genomics; 1.70A {Methanosarcina mazei}

Probab=99.88  E-value=1.6e-21  Score=156.63  Aligned_cols=131  Identities=19%  Similarity=0.237  Sum_probs=103.0

Q ss_pred             ceeEEEEEEEeCCceEEEEEEecCCCCCCCceeCcceeccCCCCHHHHHHHHHHHHhCCCcceeEEEEEEeeeccccceE
Q 039665          122 HRVGVGAFVMNNKRELLVVQENNGALKGTGVWKLPTGTIEEGEDICAAAVREVKEETGIDTEFVEVLAFRQSHRSFFRKS  201 (275)
Q Consensus       122 ~~v~v~~vv~~~~~~vLLv~r~~~~~~~~~~w~lPgG~ve~gEs~~~aA~REl~EEtGl~~~~~~~l~~~~~~~~~~~~~  201 (275)
                      ..++|++++++.+++|||++|.+.....++.|.||||++++||++.+||+||++||||+.+....+++............
T Consensus         7 ~~~~v~~vi~~~~~~vLL~~r~~~~~~~~g~w~~PgG~ve~gE~~~~aa~REl~EE~Gl~~~~~~~~~~~~~~~~~~~~~   86 (153)
T 3grn_A            7 YIISVYALIRNEKGEFLLLRRSENSRTNAGKWDLPGGKVNPDESLKEGVAREVWEETGITMVPGDIAGQVNFELTEKKVI   86 (153)
T ss_dssp             EEEEEEEEEECTTCCEEEEEECTTCSSSTTCEECSEEECCTTCCHHHHHHHHHHHHHCCCCCCCSEEEEEEEECSSCEEE
T ss_pred             eEEEEEEEEEcCCCcEEEEEEcCCCCCCCCeEECceeecCCCCCHHHHHHhhhhhhhCcEeecceEEEEEEEecCCceEE
Confidence            46778889999889999999987534478999999999999999999999999999999999888888877666655555


Q ss_pred             EEEEEEEEecCCccccCCccccceEEEEeHhhHhcCC-CcccchHHHHHHHHHHhhcc
Q 039665          202 DLFFVCMLRPRNFHIQKQDSEIAAAQWMQAEDYAAQP-YVLKHQMFNYICQICLTKSE  258 (275)
Q Consensus       202 ~~~f~~~~~~~~~~~~~~~~E~~~~~Wv~~eel~~~~-~~~~~~~~~~~~~~~~~~~~  258 (275)
                      .++|.|...  .+.+.. ..|..+++|++++++.+++ ++.   .++.+++.+.+...
T Consensus        87 ~~~~~~~~~--~~~~~~-~~e~~~~~W~~~~el~~~~~~~~---~~~~~l~~l~~~~~  138 (153)
T 3grn_A           87 AIVFDGGYV--VADVKL-SYEHIEYSWVSLEKILGMETLPA---YFRDFFERFDRENK  138 (153)
T ss_dssp             EEEEEEEEC--CCCCCC-CTTEEEEEEECHHHHTTCSSSCH---HHHHHHHHHHHHHT
T ss_pred             EEEEEEEec--CCcEec-CCCcceEEEEEHHHhhhcccchH---HHHHHHHHHhcccc
Confidence            666666543  233332 4788899999999999987 544   45666666665443

>3i7u_A AP4A hydrolase; nudix protein, diadenosine polyphosphate, S genomics, NPPSFA, national project on protein structural AN functional analyses; HET: PGE PG4; 1.80A {Aquifex aeolicus} PDB: 3i7v_A*

Probab=99.88  E-value=5.1e-22  Score=156.85  Aligned_cols=121  Identities=21%  Similarity=0.328  Sum_probs=88.1

Q ss_pred             ceeEEEEEEEeCCceEEEEEEecCCCCCCCceeCcceeccCCCCHHHHHHHHHHHHhCCCcceeEEEEEEeeeccccc--
Q 039665          122 HRVGVGAFVMNNKRELLVVQENNGALKGTGVWKLPTGTIEEGEDICAAAVREVKEETGIDTEFVEVLAFRQSHRSFFR--  199 (275)
Q Consensus       122 ~~v~v~~vv~~~~~~vLLv~r~~~~~~~~~~w~lPgG~ve~gEs~~~aA~REl~EEtGl~~~~~~~l~~~~~~~~~~~--  199 (275)
                      ..+++++||++ +++|||++|.      .|.|.||||++|+|||+.+||+||++||||+.+....+++.....+...+  
T Consensus         3 ~~~aag~vv~~-~~~vLL~~r~------~g~W~~PgG~ve~gEt~~~aa~RE~~EEtGl~~~~~~~l~~~~~~~~~~~~~   75 (134)
T 3i7u_A            3 KEFSAGGVLFK-DGEVLLIKTP------SNVWSFPKGNIEPGEKPEETAVREVWEETGVKGEILDYIGEIHYWYTLKGER   75 (134)
T ss_dssp             EEEEEEEEEEE-TTEEEEEECT------TSCEECCEEECCTTCCHHHHHHHHHHHHHSEEEEEEEEEEEEEEEEEETTEE
T ss_pred             cEEEEEEEEEE-CCEEEEEEeC------CCcEECCeeEecCCCCHHHHHHHHHHHhcCceEEEeeeeeeeeEEecCCCce
Confidence            34678888887 5799999875      36799999999999999999999999999999988888876544333222  


Q ss_pred             --eEEEEEEEEEecCCccccCCccccceEEEEeHhhHhcCCCcccchHHHHHHHHHHh
Q 039665          200 --KSDLFFVCMLRPRNFHIQKQDSEIAAAQWMQAEDYAAQPYVLKHQMFNYICQICLT  255 (275)
Q Consensus       200 --~~~~~f~~~~~~~~~~~~~~~~E~~~~~Wv~~eel~~~~~~~~~~~~~~~~~~~~~  255 (275)
                        ...++|+|....  +.+. .++|+.+++|++++|+.++.....   .+.+++.++.
T Consensus        76 ~~~~~~~f~~~~~~--~~~~-~~~E~~~~~W~~~~e~~~~l~~~~---~r~il~~a~~  127 (134)
T 3i7u_A           76 IFKTVKYYLMKYKE--GEPR-PSWEVKDAKFFPIKEAKKLLKYKG---DKEIFEKALK  127 (134)
T ss_dssp             EEEEEEEEEEEEEE--ECCC-CCTTSSEEEEEEHHHHHHHBCSHH---HHHHHHHHHH
T ss_pred             EEEEEEEEEEEEcC--CcCc-CChhheEEEEEEHHHHhhhcCChH---HHHHHHHHHH
Confidence              334567775543  3333 346899999999999988754332   3344444443

>2w4e_A MUTT/nudix family protein; ADP-ribose pyrophosphatase, hydrolase; 2.00A {Deinococcus radiodurans}

Probab=99.87  E-value=3.1e-22  Score=159.82  Aligned_cols=117  Identities=18%  Similarity=0.075  Sum_probs=85.4

Q ss_pred             ceeEEEEEEEeCCceEEEEEEecCCCCCCCceeCcceeccCCCCHHHHHHHHHHHHhCCCcceeEEEEEEeeeccccceE
Q 039665          122 HRVGVGAFVMNNKRELLVVQENNGALKGTGVWKLPTGTIEEGEDICAAAVREVKEETGIDTEFVEVLAFRQSHRSFFRKS  201 (275)
Q Consensus       122 ~~v~v~~vv~~~~~~vLLv~r~~~~~~~~~~w~lPgG~ve~gEs~~~aA~REl~EEtGl~~~~~~~l~~~~~~~~~~~~~  201 (275)
                      +..+|++++++.++++||+++++.+. +++.|+||||++|+||++.+||+||++||||+.+..+..++.+..........
T Consensus         4 ~~~~v~vi~~~~~~~vLLv~~~r~~~-~~~~w~~PgG~ve~gEt~~~aa~REl~EEtGl~~~~~~~l~~~~~~~~~~~~~   82 (145)
T 2w4e_A            4 GPRAVFILPVTAQGEAVLIRQFRYPL-RATITEIVAGGVEKGEDLGAAAARELLEEVGGAASEWVPLPGFYPQPSISGVV   82 (145)
T ss_dssp             CCEEEEEEEEETTSEEEEEEEEETTT-TEEEEECEEEECCTTCCHHHHHHHHHHHHHCEECSEEEECCCBBSCTTTCCCE
T ss_pred             eCCEEEEEEEcCCCEEEEEEEEecCC-CCCEEEeCCccCCCCCCHHHHHHHHHHHhhCCccCeEEEEecCcCCCCccCce
Confidence            34578889999899999998876542 45699999999999999999999999999999998877776554444444455


Q ss_pred             EEEEEEEEecCCccccCCccccceEEEEeHhhHhcCCCc
Q 039665          202 DLFFVCMLRPRNFHIQKQDSEIAAAQWMQAEDYAAQPYV  240 (275)
Q Consensus       202 ~~~f~~~~~~~~~~~~~~~~E~~~~~Wv~~eel~~~~~~  240 (275)
                      .++|++.... ......+++|+.+++|++++++.++...
T Consensus        83 ~~~f~~~~~~-~~~~~~~~~E~~~~~w~~~~el~~~~~~  120 (145)
T 2w4e_A           83 FYPLLALGVT-LGAAQLEDTETIERVVLPLAEVYRMLEA  120 (145)
T ss_dssp             EEEEEEEEEE-EC--------CEEEEEEEHHHHHHHHHH
T ss_pred             EEEEEEEecc-cCCCCCCCCCeEEEEEEeHHHHHHHHHc
Confidence            6777775322 1234456788999999999999887443

>3gwy_A Putative CTP pyrophosphohydrolase; structural genomics, PSI-2, protein structure INI NEW YORK SGX research center for structural genomics; 2.00A {Bacteroides fragilis} SCOP: d.113.1.0

Probab=99.87  E-value=4.7e-21  Score=151.63  Aligned_cols=125  Identities=23%  Similarity=0.211  Sum_probs=93.8

Q ss_pred             eeEEEEEEEeCCceEEEEEEecCCCC-CCCceeCcceeccCCCCHHHHHHHHHHHHhCCCcceeEEEEEEeeeccccceE
Q 039665          123 RVGVGAFVMNNKRELLVVQENNGALK-GTGVWKLPTGTIEEGEDICAAAVREVKEETGIDTEFVEVLAFRQSHRSFFRKS  201 (275)
Q Consensus       123 ~v~v~~vv~~~~~~vLLv~r~~~~~~-~~~~w~lPgG~ve~gEs~~~aA~REl~EEtGl~~~~~~~l~~~~~~~~~~~~~  201 (275)
                      ...|++++.+ +++|||+||.+.+.. .+|.|.||||++++||++.+||+||++||||+.+.....++.+..........
T Consensus         6 ~~~v~~vi~~-~~~vLL~~r~~~~~~~~~g~w~lPgG~ve~gE~~~~aa~REl~EE~Gl~~~~~~~~~~~~~~~~~~~~~   84 (140)
T 3gwy_A            6 IEVVAAVIRL-GEKYLCVQRGQTKFSYTSFRYEFPGGKVEEGESLQEALQREIMEEMDYVIEVGEKLLTVHHTYPDFEIT   84 (140)
T ss_dssp             EEEEEEEEEE-TTEEEEEEC---------CCEECSEEECCTTCCHHHHHHHHHHHHHCCCEEEEEEEEEEECCCSSCCEE
T ss_pred             EEEEEEEEEe-CCEEEEEEecCCCCCCCCCeEECCCccCCCCCCHHHHHHHHHHHhhCcEEEeceEEEEEEEEeCCceEE
Confidence            3456667777 789999999865421 57899999999999999999999999999999999999998877666666667


Q ss_pred             EEEEEEEEecCCccccCCccccceEEEEeHhhHhcCCCcccchHHHHHHHHHHh
Q 039665          202 DLFFVCMLRPRNFHIQKQDSEIAAAQWMQAEDYAAQPYVLKHQMFNYICQICLT  255 (275)
Q Consensus       202 ~~~f~~~~~~~~~~~~~~~~E~~~~~Wv~~eel~~~~~~~~~~~~~~~~~~~~~  255 (275)
                      .++|.|....  ..  +...|..+++|++++++.++++...   .+.+++.+.+
T Consensus        85 ~~~f~~~~~~--~~--~~~~E~~~~~W~~~~el~~~~~~~~---~~~il~~~~~  131 (140)
T 3gwy_A           85 MHAFLCHPVG--QR--YVLKEHIAAQWLSTREMAILDWAEA---DKPIVRKISE  131 (140)
T ss_dssp             EEEEEEEECC--SC--CCCCSSCEEEEECHHHHTTSCBCGG---GHHHHHHHHC
T ss_pred             EEEEEEEecC--Cc--ccccccceeEeccHHHHhhCCCCcc---cHHHHHHHHh
Confidence            7778776543  22  2356889999999999999988765   3455555443

>3h95_A Nucleoside diphosphate-linked moiety X motif 6; NUDT6, nudix, hydrolase, GFG, GFG-1, FGF2AS, structural GENO structural genomics consortium, SGC; HET: FLC; 1.70A {Homo sapiens}

Probab=99.87  E-value=2.8e-21  Score=162.40  Aligned_cols=137  Identities=38%  Similarity=0.623  Sum_probs=96.7

Q ss_pred             CCCCCCCcceeEEEEEEEeC-CceEEEEEEecCCCCCCCceeCcceeccCCCCHHHHHHHHHHHHhCCCcceeEEEEEEe
Q 039665          114 DVLPANASHRVGVGAFVMNN-KRELLVVQENNGALKGTGVWKLPTGTIEEGEDICAAAVREVKEETGIDTEFVEVLAFRQ  192 (275)
Q Consensus       114 ~~~p~~~~~~v~v~~vv~~~-~~~vLLv~r~~~~~~~~~~w~lPgG~ve~gEs~~~aA~REl~EEtGl~~~~~~~l~~~~  192 (275)
                      +.++.+.+++++|++++++. +++|||+|++..   .++.|.||||++++||++.+||+||++||||+.+....++++..
T Consensus        17 ~~~~~~~~~~v~v~~~v~~~~~~~vLL~~r~~~---~~g~w~lPGG~ve~gEs~~~aA~REl~EEtGl~~~~~~l~~~~~   93 (199)
T 3h95_A           17 NLYFQSMSHQVGVAGAVFDESTRKILVVQDRNK---LKNMWKFPGGLSEPEEDIGDTAVREVFEETGIKSEFRSVLSIRQ   93 (199)
T ss_dssp             ---------CCEEEEEEEETTTTEEEEEEESSS---STTSBBCCEEECCTTCCHHHHHHHHHHHHHCCCEEEEEEEEEEE
T ss_pred             ccccccCcccceEEEEEEeCCCCEEEEEEEcCC---CCCCEECCccccCCCCCHHHHHHHHHHHHhCCccccceEEEEEe
Confidence            34455668889999999985 589999998642   46899999999999999999999999999999998888877543


Q ss_pred             ee--ccccceEEEEEEEEEecCCccccCCccccceEEEEeHhhHhcCCCcccchHHHHHHHHHHh
Q 039665          193 SH--RSFFRKSDLFFVCMLRPRNFHIQKQDSEIAAAQWMQAEDYAAQPYVLKHQMFNYICQICLT  255 (275)
Q Consensus       193 ~~--~~~~~~~~~~f~~~~~~~~~~~~~~~~E~~~~~Wv~~eel~~~~~~~~~~~~~~~~~~~~~  255 (275)
                      ..  ........++|+|.+......+.++++|+.+++|++++++.++...  .++...++..++.
T Consensus        94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~~~W~~~~el~~~~~~--~~~~~~~~~~~~~  156 (199)
T 3h95_A           94 QHTNPGAFGKSDMYIICRLKPYSFTINFCQEECLRCEWMDLNDLAKTENT--TPITSRVARLLLY  156 (199)
T ss_dssp             CC---------CEEEEEEEEESCCCCCCCTTTEEEEEEEEHHHHHHCSSB--CHHHHHHHHHHHH
T ss_pred             eecCCCCceeEEEEEEEEEcCCCcccCCCccceeeeEEEeHHHHhhhhhc--ChHHHHHHHHHHh
Confidence            22  2223445567777776655566667889999999999999988643  3355555555544

>1vcd_A NDX1; nudix protein, diadenosine polyphosphate, AP6A, thermus THER HB8, hydrolase, riken structural genomics/proteomics initia RSGI; 1.70A {Thermus thermophilus} SCOP: d.113.1.1 PDB: 1vc8_A 1vc9_A*

Probab=99.87  E-value=4.5e-21  Score=148.58  Aligned_cols=121  Identities=27%  Similarity=0.409  Sum_probs=94.1

Q ss_pred             eEEEEEEEeCCceEEEEEEecCCCCCCCceeCcceeccCCCCHHHHHHHHHHHHhCCCcceeEEEEEEeeeccccceEEE
Q 039665          124 VGVGAFVMNNKRELLVVQENNGALKGTGVWKLPTGTIEEGEDICAAAVREVKEETGIDTEFVEVLAFRQSHRSFFRKSDL  203 (275)
Q Consensus       124 v~v~~vv~~~~~~vLLv~r~~~~~~~~~~w~lPgG~ve~gEs~~~aA~REl~EEtGl~~~~~~~l~~~~~~~~~~~~~~~  203 (275)
                      +++++++++.+++|||+||.+      |.|.||||++++||++.+||+||++||||+.+.....++.............+
T Consensus         3 ~~~~~vi~~~~~~vLl~~r~~------g~w~~PgG~ve~gE~~~~aa~RE~~EE~Gl~~~~~~~~~~~~~~~~~~~~~~~   76 (126)
T 1vcd_A            3 LGAGGVVFNAKREVLLLRDRM------GFWVFPKGHPEPGESLEEAAVREVWEETGVRAEVLLPLYPTRYVNPKGVEREV   76 (126)
T ss_dssp             EEEEEEEECTTSCEEEEECTT------SCEECCEECCCTTCCHHHHHHHHHHHHHCCEEEEEEEEEEEEEECTTSCEEEE
T ss_pred             eEEEEEEEcCCCEEEEEEECC------CCccCCcCcCCCCCCHHHHHHHHHHHhhCcEeeeccEEeEEEEecCCceEEEE
Confidence            578899999889999999863      68999999999999999999999999999999988888877655544455566


Q ss_pred             EEEEEEecCCccccCCccccceEEEEeHhhHhcCCCcccchHHHHHHHHHHhh
Q 039665          204 FFVCMLRPRNFHIQKQDSEIAAAQWMQAEDYAAQPYVLKHQMFNYICQICLTK  256 (275)
Q Consensus       204 ~f~~~~~~~~~~~~~~~~E~~~~~Wv~~eel~~~~~~~~~~~~~~~~~~~~~~  256 (275)
                      +|+|......   ..++.|+.+++|++++++.++.....   .+.+++.+++.
T Consensus        77 ~~~~~~~~~~---~~~~~e~~~~~w~~~~el~~~~~~~~---~~~~l~~~~~~  123 (126)
T 1vcd_A           77 HWFLMRGEGA---PRLEEGMTGAGWFSPEEARALLAFPE---DLGLLEVALER  123 (126)
T ss_dssp             EEEEEEEESC---CCCCTTCCEEEEECHHHHHHHBCSHH---HHHHHHHHHHH
T ss_pred             EEEEEEcCCC---CCCCcceeeeEEcCHHHHHHhhcChh---HHHHHHHHHHh
Confidence            7777554322   23567889999999999998755433   44555555543

>3hhj_A Mutator MUTT protein; niaid, ssgcid, decode, UW, SBRI, infectious diseases, hydrol structural genomics; 2.10A {Bartonella henselae}

Probab=99.87  E-value=2.3e-21  Score=156.57  Aligned_cols=136  Identities=21%  Similarity=0.354  Sum_probs=95.3

Q ss_pred             CcCCCCCCCcceeEEEEEEEeCCceEEEEEEecCCCCCCCceeCcceeccCCCCHHHHHHHHHHHHhCCCcceeEE--EE
Q 039665          112 TADVLPANASHRVGVGAFVMNNKRELLVVQENNGALKGTGVWKLPTGTIEEGEDICAAAVREVKEETGIDTEFVEV--LA  189 (275)
Q Consensus       112 ~~~~~p~~~~~~v~v~~vv~~~~~~vLLv~r~~~~~~~~~~w~lPgG~ve~gEs~~~aA~REl~EEtGl~~~~~~~--l~  189 (275)
                      ++.+++........+++++++.+++|||++|...+. ++|.|.||||++++||++.+||+||++||||+.+....+  ++
T Consensus        18 gP~~~~~~~~~~~~~~~~i~~~~~~vLL~~r~~~~~-~~g~w~~PgG~ve~gE~~~~aa~RE~~EEtGl~~~~~~~~~~~   96 (158)
T 3hhj_A           18 GPGSMPIKSSLLIVVACALLDQDNRVLLTQRPEGKS-LAGLWEFPGGKVEQGETPEASLIRELEEELGVHVQADNLFPLT   96 (158)
T ss_dssp             ---------CEEEEEEEEEBCTTSEEEEEECCCTTS-CCCCCBCCEEECCTTCCHHHHHHHHHHHHHCCBCCGGGCEEEE
T ss_pred             CCccCCCCCceEEEEEEEEEeCCCEEEEEEeCCCCC-CCCEEECCceeecCCCCHHHHHHHHHHHHhCcEeecceEEEEE
Confidence            333444444555667778888889999999986544 689999999999999999999999999999999877644  55


Q ss_pred             EEeeeccccceEEEEEEEEEecCCccccCCccccceEEEEeHhhHhcCCCcccchHHHHHHHHHHh
Q 039665          190 FRQSHRSFFRKSDLFFVCMLRPRNFHIQKQDSEIAAAQWMQAEDYAAQPYVLKHQMFNYICQICLT  255 (275)
Q Consensus       190 ~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~E~~~~~Wv~~eel~~~~~~~~~~~~~~~~~~~~~  255 (275)
                      .............++|.|...  ..  .....|..+++|++++++.++++...   .+.+++.+.+
T Consensus        97 ~~~~~~~~~~~~~~~~~~~~~--~~--~~~~~e~~~~~W~~~~el~~~~~~~~---~~~il~~~~~  155 (158)
T 3hhj_A           97 FASHGYETFHLLMPLYFCSHY--KG--VAQGREGQNLKWIFINDLDKYPMPEA---DKPLVQVLKN  155 (158)
T ss_dssp             EEEEECSSCEEEEEEEEESCC--BS--CCCCTTSCEEEEEEGGGGGGSCCCTT---THHHHHHHHH
T ss_pred             EEeeccCCcEEEEEEEEEEEC--CC--ccCCccccceEEEcHHHHhhCCCCcc---hHHHHHHHHH
Confidence            454555554555556666332  22  23467888999999999999988665   3455555444

>1v8y_A ADP-ribose pyrophosphatase; nudix motif, loop-helix-loop, MUTT family, riken structural genomics/proteomics initiative, RSGI; HET: APR; 1.65A {Thermus thermophilus} SCOP: d.113.1.1 PDB: 1v8v_A* 1v8n_A 1v8l_A* 1v8m_A* 1v8i_A 1v8r_A* 1v8s_A* 1v8t_A* 1v8w_A 1v8u_A

Probab=99.86  E-value=2e-21  Score=159.08  Aligned_cols=115  Identities=23%  Similarity=0.337  Sum_probs=86.6

Q ss_pred             ceeEEEEEEEeCCceEEEEEEecCCCCCCCceeCcceeccCCCCHHHHHHHHHHHHhCCCcceeEEEEEEeeeccccceE
Q 039665          122 HRVGVGAFVMNNKRELLVVQENNGALKGTGVWKLPTGTIEEGEDICAAAVREVKEETGIDTEFVEVLAFRQSHRSFFRKS  201 (275)
Q Consensus       122 ~~v~v~~vv~~~~~~vLLv~r~~~~~~~~~~w~lPgG~ve~gEs~~~aA~REl~EEtGl~~~~~~~l~~~~~~~~~~~~~  201 (275)
                      ++.+|++++++ ++++||++|++.+ .+++.|+||||++|+||++.+||+||++||||+ +..+..++.+..........
T Consensus        33 ~~~~v~vii~~-~~~vLL~~~~r~~-~~~~~w~lPgG~ve~gEs~~~aa~REl~EEtGl-~~~~~~l~~~~~~~~~~~~~  109 (170)
T 1v8y_A           33 HKPAVAVIALR-EGRMLFVRQMRPA-VGLAPLEIPAGLIEPGEDPLEAARRELAEQTGL-SGDLTYLFSYFVSPGFTDEK  109 (170)
T ss_dssp             ECCEEEEEEEE-TTEEEEEECCBTT-TTBCCBBCSEEECCTTCCHHHHHHHHHHHHHSE-EEEEEEEEEEESCTTTBCCE
T ss_pred             cCCeEEEEEEE-CCEEEEEEEEeCC-CCCCEEECCccccCCCCCHHHHHHHHHHHHHCC-CcCceeeEEEecCCCccccE
Confidence            34568888899 8999999987655 367899999999999999999999999999999 88888888776555555566


Q ss_pred             EEEEEEEEecCCccccCCccccceEEEEeHhhHhcCCCc
Q 039665          202 DLFFVCMLRPRNFHIQKQDSEIAAAQWMQAEDYAAQPYV  240 (275)
Q Consensus       202 ~~~f~~~~~~~~~~~~~~~~E~~~~~Wv~~eel~~~~~~  240 (275)
                      .++|+|..... .....+++|..++.|++++++.++...
T Consensus       110 ~~~f~~~~~~~-~~~~~~~~E~~~~~W~~~~el~~~~~~  147 (170)
T 1v8y_A          110 THVFLAENLKE-VEAHPDEDEAIEVVWMRPEEALERHQR  147 (170)
T ss_dssp             EEEEEEEEEEE-CC--------CEEEEECHHHHHHHHHT
T ss_pred             EEEEEEEeccc-cCCCCCCCceEEEEEEEHHHHHHHHHC
Confidence            77788765322 233446788999999999999887543

>3ees_A Probable pyrophosphohydrolase; nudix, RNA pyrophosphohydrolase; 1.90A {Bdellovibrio bacteriovorus} PDB: 3eeu_A 3ef5_A* 3ffu_A*

Probab=99.86  E-value=3.6e-21  Score=153.81  Aligned_cols=129  Identities=21%  Similarity=0.238  Sum_probs=98.6

Q ss_pred             eeEEEEEEEeCCceEEEEEEecCCCCCCCceeCcceeccCCCCHHHHHHHHHHHHhCCCcceeEEEEEEeeeccccceEE
Q 039665          123 RVGVGAFVMNNKRELLVVQENNGALKGTGVWKLPTGTIEEGEDICAAAVREVKEETGIDTEFVEVLAFRQSHRSFFRKSD  202 (275)
Q Consensus       123 ~v~v~~vv~~~~~~vLLv~r~~~~~~~~~~w~lPgG~ve~gEs~~~aA~REl~EEtGl~~~~~~~l~~~~~~~~~~~~~~  202 (275)
                      .+.+++++++.+++|||++|...+ .++|.|.||||++++||++.+||+||++||||+.+....+++...+.+.......
T Consensus        21 ~~~~~~~i~~~~~~vLl~~r~~~~-~~~g~w~~PgG~ve~gE~~~~aa~RE~~EE~Gl~~~~~~~~~~~~~~~~~~~~~~   99 (153)
T 3ees_A           21 WIPVVAGFLRKDGKILVGQRPENN-SLAGQWEFPGGKIENGETPEEALARELNEELGIEAEVGELKLACTHSYGDVGILI   99 (153)
T ss_dssp             EEEEEEEEEEETTEEEEEECCTTS-TTTTCEECSEEECCTTCCHHHHHHHHHHHHHSCEEECCCEEEEEEEEETTEEEEE
T ss_pred             eEEEEEEEEEECCEEEEEEeCCCC-CCCCeEECCceeeCCCCCHHHHHHHHHHHHHCCccccCceEEEEEEecCCCeEEE
Confidence            344556666777999999998654 3679999999999999999999999999999999988888887666666555555


Q ss_pred             EEEEEEEecCCccccCCccccceEEEEeHhhHhcCCCcccchHHHHHHHHHHhhccC
Q 039665          203 LFFVCMLRPRNFHIQKQDSEIAAAQWMQAEDYAAQPYVLKHQMFNYICQICLTKSEK  259 (275)
Q Consensus       203 ~~f~~~~~~~~~~~~~~~~E~~~~~Wv~~eel~~~~~~~~~~~~~~~~~~~~~~~~~  259 (275)
                      ++|.|.....  .  .+..|..++.|++++++.++++...   .+.+++.+.+.++.
T Consensus       100 ~~~~~~~~~~--~--~~~~e~~~~~W~~~~el~~~~~~~~---~~~~l~~~~~~~~~  149 (153)
T 3ees_A          100 LFYEILYWKG--E--PRAKHHMMLEWIHPEELKHRNIPEA---NRKILHKIYKALGL  149 (153)
T ss_dssp             EEEEECEEES--C--CCCSSSSEEEEECGGGGGGSCCCHH---HHTTHHHHHHHTTC
T ss_pred             EEEEEEECCC--C--cCCCccceEEEecHHHhhhCCCCcc---hHHHHHHHHHhhcc
Confidence            6666644322  2  3567888999999999999877644   45556666555543

>4dyw_A MUTT/nudix family protein; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.50A {Burkholderia pseudomallei}

Probab=99.86  E-value=3e-21  Score=156.08  Aligned_cols=122  Identities=20%  Similarity=0.311  Sum_probs=90.2

Q ss_pred             CcCCCCCCCcceeEEEEEEEeCCceEEEEEEecCCCCCCCceeCcceeccCCCCHHHHHHHHHHHHhCCCcceeEEEEEE
Q 039665          112 TADVLPANASHRVGVGAFVMNNKRELLVVQENNGALKGTGVWKLPTGTIEEGEDICAAAVREVKEETGIDTEFVEVLAFR  191 (275)
Q Consensus       112 ~~~~~p~~~~~~v~v~~vv~~~~~~vLLv~r~~~~~~~~~~w~lPgG~ve~gEs~~~aA~REl~EEtGl~~~~~~~l~~~  191 (275)
                      .+..++....++++|+++|++ +++|||++|.+.+  ..+.|.||||++++||++.+||+||++||||+.+....+++.+
T Consensus        18 ~p~~m~~~~~~~~~v~~vi~~-~~~vLL~~r~~~~--~~~~w~lPgG~ve~gEs~~~aa~REl~EEtGl~~~~~~~~~~~   94 (157)
T 4dyw_A           18 GPGSMQHTEQPRVGCGAAIVR-DGRILLIKRKRAP--EAGCWGLPGGKVDWLEPVERAVCREIEEELGIALERATLLCVV   94 (157)
T ss_dssp             --------CCCEEEEEEEEEE-TTEEEEEEECSSS--STTCEECCEEECCTTCCHHHHHHHHHHHHHSCEEESCEEEEEE
T ss_pred             CCCCCCCCCCceeEEEEEEEE-CCEEEEEEecCCC--CCCEEECCcccCCCCCCHHHHHHHHHHHHHCcccccCcEEEEE
Confidence            334444455678889999998 7899999998654  6799999999999999999999999999999999988888877


Q ss_pred             eeecc--ccceEEEEEEEEEecCCccccCCccccceEEEEeHhhHhcC
Q 039665          192 QSHRS--FFRKSDLFFVCMLRPRNFHIQKQDSEIAAAQWMQAEDYAAQ  237 (275)
Q Consensus       192 ~~~~~--~~~~~~~~f~~~~~~~~~~~~~~~~E~~~~~Wv~~eel~~~  237 (275)
                      .....  ......++|+|...... ....+++|+.+++|++++++.+.
T Consensus        95 ~~~~~~~~~~~~~~~f~~~~~~~~-~~~~~~~E~~~~~W~~~~el~~~  141 (157)
T 4dyw_A           95 DHIDAANGEHWVAPVYLAHAFSGE-PRVVEPDRHEALGWFALDDLPQP  141 (157)
T ss_dssp             EEEETTTTEEEEEEEEEESEEESC-CCCSCTTTEEEEEEEETTSCCSS
T ss_pred             EeeccCCCcEEEEEEEEEEEcCCC-cccCCCCcEeEEEEECHHHcccc
Confidence            66553  22344456666443222 11234578999999999999884

>3r03_A Nudix hydrolase; structural genomics, PSI2, protein structure INIT NEW YORK SGX research center for structural genomics, nysgx; HET: ADP; 2.49A {Rhodospirillum rubrum} SCOP: d.113.1.0

Probab=99.86  E-value=7.2e-21  Score=150.77  Aligned_cols=128  Identities=26%  Similarity=0.316  Sum_probs=94.9

Q ss_pred             eeEEEEEEEeCCceEEEEEEecCCCCCCCceeCcceeccCCCCHHHHHHHHHHHHhCCCcceeE--EEEEEeeeccccce
Q 039665          123 RVGVGAFVMNNKRELLVVQENNGALKGTGVWKLPTGTIEEGEDICAAAVREVKEETGIDTEFVE--VLAFRQSHRSFFRK  200 (275)
Q Consensus       123 ~v~v~~vv~~~~~~vLLv~r~~~~~~~~~~w~lPgG~ve~gEs~~~aA~REl~EEtGl~~~~~~--~l~~~~~~~~~~~~  200 (275)
                      ...+++++++.+++|||++|...+. ++|.|.||||++++||++.+||+||++||||+.+....  .+....+.......
T Consensus         8 ~~~~~~vi~~~~~~vLl~~r~~~~~-~~g~w~lPgG~ve~gE~~~~aa~RE~~EE~Gl~~~~~~~~~~~~~~~~~~~~~~   86 (144)
T 3r03_A            8 LLVTAAALIDPDGRVLLAQRPPGKS-LAGLWEFPGGKLEPGETPEAALVRELAEELGVDTRASCLAPLAFASHSYDTFHL   86 (144)
T ss_dssp             EEEEEEEEBCTTSCEEEEECCTTSS-STTCEECSEEECCTTCCHHHHHHHHHHHHHCCBCCGGGCEEEEEEEEECSSSEE
T ss_pred             eEEEEEEEEcCCCEEEEEEeCCCCC-CCCcEECCCcEecCCCCHHHHHHHHHHHHhCceeeccceEEEEeeeccCCCeEE
Confidence            3456677788889999999986554 67999999999999999999999999999999987763  34444455555455


Q ss_pred             EEEEEEEEEecCCccccCCccccceEEEEeHhhHhcCCCcccchHHHHHHHHHHhhcc
Q 039665          201 SDLFFVCMLRPRNFHIQKQDSEIAAAQWMQAEDYAAQPYVLKHQMFNYICQICLTKSE  258 (275)
Q Consensus       201 ~~~~f~~~~~~~~~~~~~~~~E~~~~~Wv~~eel~~~~~~~~~~~~~~~~~~~~~~~~  258 (275)
                      ..++|.|...  ..  .....|..+++|++++++.+++++..   .+.+++.+.+...
T Consensus        87 ~~~~~~~~~~--~~--~~~~~e~~~~~W~~~~el~~~~~~~~---~~~~l~~~~~~~~  137 (144)
T 3r03_A           87 LMPLYACRSW--RG--RATAREGQTLAWVRAERLREYPMPPA---DLPLIPILQDWLE  137 (144)
T ss_dssp             EEEEEEECCC--BS--CCCCCSSCEEEEECGGGGGGSCCCTT---TTTHHHHHHHHC-
T ss_pred             EEEEEEEEec--CC--ccCCCCcceEEEEeHHHhccCCCCcc---hHHHHHHHhCccc
Confidence            5566666432  22  23467888999999999999988765   3455555555443

>3gg6_A Nudix motif 18, nucleoside diphosphate-linked moiety X motif 18; NUDT18, NXR1, nucleotide hydrolase, hydrolase, structural genomics; 2.10A {Homo sapiens}

Probab=99.86  E-value=6.1e-21  Score=153.58  Aligned_cols=129  Identities=23%  Similarity=0.328  Sum_probs=97.2

Q ss_pred             ceeEEEEEEEeCCceEEEEEEecCCCCCCCceeCcceeccCCCCHHHHHHHHHHHHhCCCcceeEEEEEEeeeccccceE
Q 039665          122 HRVGVGAFVMNNKRELLVVQENNGALKGTGVWKLPTGTIEEGEDICAAAVREVKEETGIDTEFVEVLAFRQSHRSFFRKS  201 (275)
Q Consensus       122 ~~v~v~~vv~~~~~~vLLv~r~~~~~~~~~~w~lPgG~ve~gEs~~~aA~REl~EEtGl~~~~~~~l~~~~~~~~~~~~~  201 (275)
                      ....|++++++.+++|||++|.+.+  +.+.|.||||++++||++.+||+||++||||+.+....+++.+...   .+..
T Consensus        19 ~~~~v~~~i~~~~~~vLl~~r~~~~--~~~~w~~PgG~ve~gE~~~~aa~REl~EEtGl~~~~~~~~~~~~~~---~~~~   93 (156)
T 3gg6_A           19 VCYVVLAVFLSEQDEVLLIQEAKRE--CRGSWYLPAGRMEPGETIVEALQREVKEEAGLHCEPETLLSVEERG---PSWV   93 (156)
T ss_dssp             CEEEEEEECBCTTSEEEEEECCCTT--STTCEECSEEECCTTCCHHHHHHHHHHHHHCEEEEEEEEEEEEESS---TTEE
T ss_pred             eEEEEEEEEEeCCCEEEEEEecCCC--CCCEEECCeeeccCCCCHHHHHHHHHHHhhCceeEeeeEEEEEcCC---CCEE
Confidence            3445777888889999999998644  5789999999999999999999999999999999988888876543   3345


Q ss_pred             EEEEEEEEecCCccc-cCCccccceEEEEeHhhHhcCCCcccchHHHHHHHHHHhhcc
Q 039665          202 DLFFVCMLRPRNFHI-QKQDSEIAAAQWMQAEDYAAQPYVLKHQMFNYICQICLTKSE  258 (275)
Q Consensus       202 ~~~f~~~~~~~~~~~-~~~~~E~~~~~Wv~~eel~~~~~~~~~~~~~~~~~~~~~~~~  258 (275)
                      .++|+|......... ..+++|+.+++|++++++.++.....   +..++..+..++.
T Consensus        94 ~~~f~~~~~~~~~~~~~~~~~E~~~~~W~~~~el~~~~~~~~---~~~~l~~~~~~~~  148 (156)
T 3gg6_A           94 RFVFLARPTGGILKTSKEADAESLQAAWYPRTSLPTPLRAHD---ILHLVELAAQYRQ  148 (156)
T ss_dssp             EEEEEEEEEEECCCCGGGCSSSCSEEEEEETTSCCSSBSCTH---HHHHHHHHHHHHH
T ss_pred             EEEEEEEeeCCeeccCCCCCcceeeeEEEcHHHCcccccchh---HHHHHHHHHHHhh
Confidence            677777654322221 23557899999999999988765443   4455555554443

>2rrk_A ORF135, CTP pyrophosphohydrolase; NMR {Escherichia coli}

Probab=99.85  E-value=1.4e-20  Score=148.23  Aligned_cols=122  Identities=22%  Similarity=0.200  Sum_probs=91.1

Q ss_pred             EEEEEEeCCceEEEEEEecCCCCCCCceeCcceeccCCCCHHHHHHHHHHHHhCCCcceeEEEEEEeeeccccceEEEEE
Q 039665          126 VGAFVMNNKRELLVVQENNGALKGTGVWKLPTGTIEEGEDICAAAVREVKEETGIDTEFVEVLAFRQSHRSFFRKSDLFF  205 (275)
Q Consensus       126 v~~vv~~~~~~vLLv~r~~~~~~~~~~w~lPgG~ve~gEs~~~aA~REl~EEtGl~~~~~~~l~~~~~~~~~~~~~~~~f  205 (275)
                      ++++|++.+++|||++|...+. ++|.|+||||++++||++.+||+||++||||+.+.....++...+.........++|
T Consensus        11 ~~~~ii~~~~~vLl~~r~~~~~-~~g~w~lPgG~ve~gE~~~~aa~RE~~EE~Gl~~~~~~~~~~~~~~~~~~~~~~~~~   89 (140)
T 2rrk_A           11 VVAAIIERDGKILLAQRPAQSD-QAGLWEFAGGKVEPDESQRQALVRELREELGIEATVGEYVASHQREVSGRIIHLHAW   89 (140)
T ss_dssp             EEEEEEEETTEEEEEECCSSCS-CCCCEECCEEECCTTSCHHHHHHHHHHHHSCEEEECCEEEEEEEEEETTEEEEEEEE
T ss_pred             EEEEEEEcCCEEEEEEcCCCCC-CCCEEECCceecCCCCCHHHHHHHHHHHHHCCeeecccEEEEEEEecCCcEEEEEEE
Confidence            3334446678999999975543 679999999999999999999999999999999988888887765555544555666


Q ss_pred             EEEEecCCccccCCccccceEEEEeHhhHhcCCCcccchHHHHHHHHHHh
Q 039665          206 VCMLRPRNFHIQKQDSEIAAAQWMQAEDYAAQPYVLKHQMFNYICQICLT  255 (275)
Q Consensus       206 ~~~~~~~~~~~~~~~~E~~~~~Wv~~eel~~~~~~~~~~~~~~~~~~~~~  255 (275)
                      .|....  ..  .+..|+.++.|++++++.++++...   .+.+++.+++
T Consensus        90 ~~~~~~--~~--~~~~e~~~~~W~~~~el~~~~~~~~---~~~~l~~~~~  132 (140)
T 2rrk_A           90 HVPDFH--GT--LQAHEHQALVWCSPEEALQYPLAPA---DIPLLEAFMA  132 (140)
T ss_dssp             EESEEE--EC--CCCSSCSCEEEECHHHHTTSCCCTT---HHHHHHHHHH
T ss_pred             EEEeeC--CC--cCCCccceeEEeCHHHHhhCCCChh---HHHHHHHHHH
Confidence            664332  22  2456788999999999999887654   3344444444

>1rya_A GDP-mannose mannosyl hydrolase; GDP-glucose, nudix, nudix Mg-complex; HET: GDP; 1.30A {Escherichia coli} SCOP: d.113.1.5 PDB: 2gt2_A 2gt4_A* 2i8t_A* 2i8u_A*

Probab=99.85  E-value=3.1e-21  Score=155.58  Aligned_cols=116  Identities=20%  Similarity=0.236  Sum_probs=89.3

Q ss_pred             ceeEEEEEEEeCCceEEEEEEecCCCCCCCceeCcceeccCCCCHHHHHHHHHHHHhCCCc--ceeEEEEEEeeecccc-
Q 039665          122 HRVGVGAFVMNNKRELLVVQENNGALKGTGVWKLPTGTIEEGEDICAAAVREVKEETGIDT--EFVEVLAFRQSHRSFF-  198 (275)
Q Consensus       122 ~~v~v~~vv~~~~~~vLLv~r~~~~~~~~~~w~lPgG~ve~gEs~~~aA~REl~EEtGl~~--~~~~~l~~~~~~~~~~-  198 (275)
                      ++++|++++++.+++|||++|.+.+  .++.|.||||++++||++.+||+||++||||+.+  ....+++.....+... 
T Consensus        17 ~~~~v~~vi~~~~~~vLl~~r~~~~--~~g~w~~PgG~ve~gE~~~~aa~REl~EEtGl~~~~~~~~~~~~~~~~~~~~~   94 (160)
T 1rya_A           17 PLVSLDFIVENSRGEFLLGKRTNRP--AQGYWFVPGGRVQKDETLEAAFERLTMAELGLRLPITAGQFYGVWQHFYDDNF   94 (160)
T ss_dssp             CEEEEEEEEECTTSCEEEEEECSSS--STTSEECCEEECCTTCCHHHHHHHHHHHHHSSCCCGGGSEEEEEEEEEESSBT
T ss_pred             cEEEEEEEEEcCCCEEEEEeccCCC--CCCEEECCccccCCCCCHHHHHHHHHHHHHCCCCCcccceEEEEEeEEEcccc
Confidence            4578889999988999999998643  4789999999999999999999999999999995  4667777665433321 


Q ss_pred             -------ceEEEEEEEEEecCCccccCCccccceEEEEeHhhHhcCCCcc
Q 039665          199 -------RKSDLFFVCMLRPRNFHIQKQDSEIAAAQWMQAEDYAAQPYVL  241 (275)
Q Consensus       199 -------~~~~~~f~~~~~~~~~~~~~~~~E~~~~~Wv~~eel~~~~~~~  241 (275)
                             ....++|.|...  ...+..++.|+.+++|++++++.+++...
T Consensus        95 ~~~~~~~~~~~~~f~~~~~--~~~~~~~~~e~~~~~W~~~~el~~~~~~~  142 (160)
T 1rya_A           95 SGTDFTTHYVVLGFRFRVS--EEELLLPDEQHDDYRWLTSDALLASDNVH  142 (160)
T ss_dssp             TBSSSCEEEEEEEEEEECC--GGGCCCCSSSEEEEEEECHHHHHHCTTBC
T ss_pred             cCCCcCcEEEEEEEEEEcC--ccccccCCCccceEEEecHHHHhhccccC
Confidence                   234455655443  33445567789999999999999876543

>2fkb_A Putative nudix hydrolase YFCD; putative protein, MAD, structural genomics, escherichia coli putative nudix hydrolase, PSI; HET: MSE; 2.00A {Escherichia coli K12} SCOP: d.113.1.2

Probab=99.85  E-value=3.2e-20  Score=152.98  Aligned_cols=131  Identities=16%  Similarity=0.163  Sum_probs=98.0

Q ss_pred             eEEEEEEEeCCceEEEEEEecCCCCCCCceeC-cceeccCCCCHHHHHHHHHHHHhCCCcceeEEEEEEeeeccccceEE
Q 039665          124 VGVGAFVMNNKRELLVVQENNGALKGTGVWKL-PTGTIEEGEDICAAAVREVKEETGIDTEFVEVLAFRQSHRSFFRKSD  202 (275)
Q Consensus       124 v~v~~vv~~~~~~vLLv~r~~~~~~~~~~w~l-PgG~ve~gEs~~~aA~REl~EEtGl~~~~~~~l~~~~~~~~~~~~~~  202 (275)
                      .++++++++.+++|||++|.......+|.|+| |||++++||++.+||+||++||||+.+..+..++.+...........
T Consensus        38 ~~~~v~i~~~~~~vLl~~R~~~~~~~~g~w~l~pGG~ve~gE~~~~aa~REl~EEtGl~~~~~~~l~~~~~~~~~~~~~~  117 (180)
T 2fkb_A           38 RATYIVVHDGMGKILVQRRTETKDFLPGMLDATAGGVVQADEQLLESARREAEEELGIAGVPFAEHGQFYFEDKNCRVWG  117 (180)
T ss_dssp             EEEEEEEECSSSCEEEEEECSSCSSSTTCEESSBCCBCBTTCCHHHHHHHHHHHHHCCBSCCCEEEEEEEEEETTEEEEE
T ss_pred             eEEEEEEECCCCEEEEEECCCCCccCCCcEEeecCCCCCCCCCHHHHHHHHHHHHHCCCccceEEEEEEEecCCCceEEE
Confidence            36778888888999999887554445789999 99999999999999999999999999888888877665555444555


Q ss_pred             EEEEEEEecCCccccCCccccceEEEEeHhhHhcCCCcccchHHHHHHHHHHhhcc
Q 039665          203 LFFVCMLRPRNFHIQKQDSEIAAAQWMQAEDYAAQPYVLKHQMFNYICQICLTKSE  258 (275)
Q Consensus       203 ~~f~~~~~~~~~~~~~~~~E~~~~~Wv~~eel~~~~~~~~~~~~~~~~~~~~~~~~  258 (275)
                      ++|+|.   ....+..++.|+.++.|++++++.++.... .+....++..++....
T Consensus       118 ~~f~~~---~~~~~~~~~~E~~~~~W~~~~el~~~~~~~-~~~~~~~l~~~~~~~~  169 (180)
T 2fkb_A          118 ALFSCV---SHGPFALQEDEVSEVCWLTPEEITARCDEF-TPDSLKALALWMKRNA  169 (180)
T ss_dssp             EEEEEE---CCCCCCCCTTTEEEEEEECHHHHHTTGGGB-CHHHHHHHHHHHHHC-
T ss_pred             EEEEEe---cCCCcCCChhHhheEEEecHHHHHHHHHHh-CCcHHHHHHHHHHhhc
Confidence            667665   234455567899999999999999983211 1234555655555543

>3u53_A BIS(5'-nucleosyl)-tetraphosphatase [asymmetrical]; hydrolase; 2.71A {Homo sapiens} PDB: 1xsa_A 1xsb_A 1xsc_A*

Probab=99.85  E-value=9.8e-21  Score=152.65  Aligned_cols=110  Identities=25%  Similarity=0.447  Sum_probs=82.3

Q ss_pred             EEEEEEE---------eCCceEEEEEEecCCCCCCCceeCcceeccCCCCHHHHHHHHHHHHhCCCcceeEEEEEEeee-
Q 039665          125 GVGAFVM---------NNKRELLVVQENNGALKGTGVWKLPTGTIEEGEDICAAAVREVKEETGIDTEFVEVLAFRQSH-  194 (275)
Q Consensus       125 ~v~~vv~---------~~~~~vLLv~r~~~~~~~~~~w~lPgG~ve~gEs~~~aA~REl~EEtGl~~~~~~~l~~~~~~-  194 (275)
                      ++|++|+         |++.++||+|+.+    +++.|.||||++|+||++.+||+||++||||+.+.....++.+... 
T Consensus         5 a~G~iifr~~~~~~~~n~~~e~LL~~r~~----~~~~W~lPgG~ve~gEt~~~aa~REl~EEtGl~~~~~~~~~~~~~~~   80 (155)
T 3u53_A            5 ACGLIIFRRCLIPKVDNNAIEFLLLQASD----GIHHWTPPKGHVEPGEDDLETALRETQEEAGIEAGQLTIIEGFKREL   80 (155)
T ss_dssp             EEEEEEEEECCCSSSSSCSEEEEEEEESS----SSCCEECSEEECCSSCCHHHHHHHHHHHHHCCCGGGEEEEEEEEEEE
T ss_pred             EeEEEEEccccccceeCCCcEEEEEEecC----CCCCEECCeeeccCCCCHHHHHHHHHHHHHCCccccceeeeeEeeee
Confidence            4677777         4567899999974    4578999999999999999999999999999999888777543322 


Q ss_pred             ---ccccceEEEEEEEEEecCCccccCCccccceEEEEeHhhHhcCCC
Q 039665          195 ---RSFFRKSDLFFVCMLRPRNFHIQKQDSEIAAAQWMQAEDYAAQPY  239 (275)
Q Consensus       195 ---~~~~~~~~~~f~~~~~~~~~~~~~~~~E~~~~~Wv~~eel~~~~~  239 (275)
                         .........+|++........+. .++|+.+++|++++|+.++..
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~E~~~~~W~~~~ea~~~~~  127 (155)
T 3u53_A           81 NYVARNKPKTVIYWLAEVKDYDVEIR-LSHEHQAYRWLGLEEACQLAQ  127 (155)
T ss_dssp             EEEETTEEEEEEEEEEEESCTTCCCC-CCTTEEEEEEECHHHHHHHHC
T ss_pred             ecCCCcceeEEEEEEEEEeccCCccC-CCcceeEEEEeEHHHHHHHcC
Confidence               12223444566666554444433 456899999999999987644

>1ktg_A Diadenosine tetraphosphate hydrolase; nudix, AMP, magnesium cluster; HET: AMP; 1.80A {Caenorhabditis elegans} SCOP: d.113.1.1 PDB: 1kt9_A*

Probab=99.85  E-value=1.5e-20  Score=147.93  Aligned_cols=126  Identities=21%  Similarity=0.240  Sum_probs=90.2

Q ss_pred             eeEEEEEEEeC---CceEEEEEEecCCCCCCCceeCcceeccCCCCHHHHHHHHHHHHhCCCcceeEEE----EEEeeec
Q 039665          123 RVGVGAFVMNN---KRELLVVQENNGALKGTGVWKLPTGTIEEGEDICAAAVREVKEETGIDTEFVEVL----AFRQSHR  195 (275)
Q Consensus       123 ~v~v~~vv~~~---~~~vLLv~r~~~~~~~~~~w~lPgG~ve~gEs~~~aA~REl~EEtGl~~~~~~~l----~~~~~~~  195 (275)
                      ..++++++++.   +++|||+||+.    +++.|.||||++++||++.+||+||++||||+.+....++    +......
T Consensus         3 ~~~~~~vi~~~~~~~~~vLl~~r~~----~~~~w~~PgG~ve~gE~~~~aa~RE~~EEtGl~~~~~~~~~~~~~~~~~~~   78 (138)
T 1ktg_A            3 VKAAGLVIYRKLAGKIEFLLLQASY----PPHHWTPPKGHVDPGEDEWQAAIRETKEEANITKEQLTIHEDCHETLFYEA   78 (138)
T ss_dssp             EEEEEEEEEEEETTEEEEEEEEESS----TTCCEESSEEECCTTCCHHHHHHHHHHHHHCCCGGGEEEEEEEEEEEEEEE
T ss_pred             eEEEEEEEEEecCCCcEEEEEEccC----CCCcEeCCccccCCCCCHHHHHHHHHHHHHCCCccceEEeccccceEEEEe
Confidence            34677888874   46899999862    4579999999999999999999999999999976655554    2332323


Q ss_pred             cccceEEEEEEEEEecCCccccCCccccceEEEEeHhhHhcCCCcccchHHHHHHHHHHhhc
Q 039665          196 SFFRKSDLFFVCMLRPRNFHIQKQDSEIAAAQWMQAEDYAAQPYVLKHQMFNYICQICLTKS  257 (275)
Q Consensus       196 ~~~~~~~~~f~~~~~~~~~~~~~~~~E~~~~~Wv~~eel~~~~~~~~~~~~~~~~~~~~~~~  257 (275)
                      .......++|+|.....  ....+++|+.+++|++++++.++.....   .+.+++.+.+++
T Consensus        79 ~~~~~~~~~f~~~~~~~--~~~~~~~e~~~~~W~~~~el~~~~~~~~---~~~~l~~~~~~l  135 (138)
T 1ktg_A           79 KGKPKSVKYWLAKLNNP--DDVQLSHEHQNWKWCELEDAIKIADYAE---MGSLLRKFSAFL  135 (138)
T ss_dssp             TTEEEEEEEEEEEECSC--CCCCCCTTEEEEEEECHHHHHHHHCCHH---HHHHHHHHHHHH
T ss_pred             CCCceEEEEEEEEecCC--cccCCCchhcEeEeccHHHHHHhhccch---HHHHHHHHHHHh
Confidence            33345667777766432  2234567899999999999998765443   444555555443

>3exq_A Nudix family hydrolase; protein structure initiative II(PSI II), NYSGXRC, 11180K, structural genomics; 2.00A {Lactobacillus brevis atcc 367}

Probab=99.85  E-value=1.6e-20  Score=152.35  Aligned_cols=128  Identities=18%  Similarity=0.143  Sum_probs=95.7

Q ss_pred             cceeEEEEEEEeCC-ceEEEEEEecCCCCCCCceeCcceeccCCCCHHHHHHHHHHHHhCCCcceeEEEEEEeeeccccc
Q 039665          121 SHRVGVGAFVMNNK-RELLVVQENNGALKGTGVWKLPTGTIEEGEDICAAAVREVKEETGIDTEFVEVLAFRQSHRSFFR  199 (275)
Q Consensus       121 ~~~v~v~~vv~~~~-~~vLLv~r~~~~~~~~~~w~lPgG~ve~gEs~~~aA~REl~EEtGl~~~~~~~l~~~~~~~~~~~  199 (275)
                      ..++++.+++++++ ++|||++|.+..  +.|.|+||||++++||++.+||+||++||||+.+....+++.........+
T Consensus         8 ~~~~~v~~vi~~~~~~~vLL~~r~~~~--~~g~w~lPgG~ve~gEs~~~aa~REl~EEtGl~~~~~~~~~~~~~~~~~~~   85 (161)
T 3exq_A            8 PVELVTMVMVTDPETQRVLVEDKVNVP--WKAGHSFPGGHVEVGEPCATAAIREVFEETGLRLSGVTFCGTCEWFDDDRQ   85 (161)
T ss_dssp             CEEEEEEEEEBCTTTCCEEEECCCCCT--TTCSBBCCCCBCCTTSCHHHHHHHHHHHHHCCEESCCEEEEEEEEECSSCS
T ss_pred             CceEEEEEEEEeCCCCEEEEEEccCCC--CCCCEEccceecCCCCCHHHHHHHHHHHhhCcEecCCcEEEEEecccCCCC
Confidence            34566777888866 799999987433  567899999999999999999999999999999999999888776653333


Q ss_pred             eEEEEEEEEEecCCccccCCccccceEEEEeHhhHhcCCCcccchHHHHHHHHHHh
Q 039665          200 KSDLFFVCMLRPRNFHIQKQDSEIAAAQWMQAEDYAAQPYVLKHQMFNYICQICLT  255 (275)
Q Consensus       200 ~~~~~f~~~~~~~~~~~~~~~~E~~~~~Wv~~eel~~~~~~~~~~~~~~~~~~~~~  255 (275)
                      .....+++.+......  +...|..+++|++++++.++++...   ++.+++.+++
T Consensus        86 ~~~~~~~~~~~~~~~~--~~~~e~~~~~W~~~~el~~~~~~~~---~~~~l~~~~~  136 (161)
T 3exq_A           86 HRKLGLLYRASNFTGT--LKASAEGQLSWLPITALTRENSAAS---LPEFLQVFTG  136 (161)
T ss_dssp             SEEEEEEEEECCEESC--CCGGGTTTEEEECGGGCCTTTBCTT---HHHHHHHHTT
T ss_pred             eEEEEEEEEEeccCCc--cCCCccceEEEeeHHHhhhCccChH---HHHHHHHHhh
Confidence            3333333333322223  3456778899999999999877654   5667777666

>3id9_A MUTT/nudix family protein; hydrolase, protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.55A {Bacillus thuringiensis str}

Probab=99.85  E-value=2.1e-20  Score=152.81  Aligned_cols=135  Identities=19%  Similarity=0.319  Sum_probs=96.6

Q ss_pred             ceeEEEEEEEeCCceEEEEEEecCCCCCCCceeCcceeccCCCCHHHHHHHHHHHHhCCCcceeEEEEEEeeeccccceE
Q 039665          122 HRVGVGAFVMNNKRELLVVQENNGALKGTGVWKLPTGTIEEGEDICAAAVREVKEETGIDTEFVEVLAFRQSHRSFFRKS  201 (275)
Q Consensus       122 ~~v~v~~vv~~~~~~vLLv~r~~~~~~~~~~w~lPgG~ve~gEs~~~aA~REl~EEtGl~~~~~~~l~~~~~~~~~~~~~  201 (275)
                      .++.|++++++ +++|||++|.+    .++.|+||||++++||++.+||+||++||||+.+....+++............
T Consensus        22 ~~~~v~~ii~~-~~~vLL~~r~~----~~~~w~~PgG~ve~gEs~~~aa~REl~EEtGl~~~~~~~~~~~~~~~~~~~~~   96 (171)
T 3id9_A           22 MQVRVTGILIE-DEKVLLVKQKV----ANRDWSLPGGRVENGETLEEAMIREMREETGLEVKIKKLLYVCDKPDASPSLL   96 (171)
T ss_dssp             CEEEEEEEEEE-TTEEEEEECSS----TTCCEECCEEECCTTCCHHHHHHHHHHHHHCCCEEEEEEEEEEEETTSSSCEE
T ss_pred             eEEEEEEEEEE-CCEEEEEEEEC----CCCeEECCCccCCCCCCHHHHHHHHHHHHHCCccccceEEEEEcccCCCCcEE
Confidence            45667777777 58999999985    36899999999999999999999999999999998888888776655555555


Q ss_pred             EEEEEEEEecCCcc---ccCCccccceEEEEeHhhHhcCCCcccchHHHHHHHHHHhhccCccCCCC
Q 039665          202 DLFFVCMLRPRNFH---IQKQDSEIAAAQWMQAEDYAAQPYVLKHQMFNYICQICLTKSEKEYAGFS  265 (275)
Q Consensus       202 ~~~f~~~~~~~~~~---~~~~~~E~~~~~Wv~~eel~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~  265 (275)
                      .++|.+........   ...+++|+.+++|++++++.++.+...   +..+++..+.. ...+.|+.
T Consensus        97 ~~~~~~~~~~~~~~~~~~~~~~~E~~~~~w~~~~el~~~~~~~~---~~~~l~~~~~~-~~~~~~l~  159 (171)
T 3id9_A           97 HITFLLERIEGEITLPSNEFDHNPIHDVQMVPINELSYYGFSET---FINLISGGLAN-AGSYQGLK  159 (171)
T ss_dssp             EEEEEEEEC-------------CCCCCEEEEETGGGGGGTCCTT---CSHHHHHGGGG-TTCBCCC-
T ss_pred             EEEEEEEEcCCcccCCccCCCcCeeeeEEEEeHHHHhhCCCCHH---HHHHHHHhhcc-ccceeccc
Confidence            66676654322211   123567899999999999999887655   33445555543 34455554

>1f3y_A Diadenosine 5',5'''-P1,P4-tetraphosphate hydrolase; enzyme,mixed 4-stranded beta sheet, 2-stranded antiparallel sheet; NMR {Lupinus angustifolius} SCOP: d.113.1.1 PDB: 1jkn_A*

Probab=99.85  E-value=8e-21  Score=153.65  Aligned_cols=130  Identities=22%  Similarity=0.394  Sum_probs=93.2

Q ss_pred             ceeEEEEEEEeCCceEEEEEEecCCCCCCCceeCcceeccCCCCHHHHHHHHHHHHhCCCcceeEEEEE--Eeeecc---
Q 039665          122 HRVGVGAFVMNNKRELLVVQENNGALKGTGVWKLPTGTIEEGEDICAAAVREVKEETGIDTEFVEVLAF--RQSHRS---  196 (275)
Q Consensus       122 ~~v~v~~vv~~~~~~vLLv~r~~~~~~~~~~w~lPgG~ve~gEs~~~aA~REl~EEtGl~~~~~~~l~~--~~~~~~---  196 (275)
                      .+.+|++++++.+++|||++|.+    .++.|.||||++++||++.+||+||++||||+.+..+.....  ....+.   
T Consensus        13 ~~~~v~~~i~~~~~~vLl~~r~~----~~g~w~~PgG~ve~gE~~~~aa~RE~~EEtGl~~~~~~~~~~~~~~~~~~~~~   88 (165)
T 1f3y_A           13 YRRNVGICLMNNDKKIFAASRLD----IPDAWQMPQGGIDEGEDPRNAAIRELREETGVTSAEVIAEVPYWLTYDFPPKV   88 (165)
T ss_dssp             CCCEEEEEEECTTSCEEEEEETT----EEEEEECCEEECCTTCCHHHHHHHHHHHHHCCCSEEEEEECSSCCBCCCCHHH
T ss_pred             eeeeEEEEEECCCCcEEEEecCC----CCCcEECCeeccCCCCCHHHHHHHHHHHhhCCChhhhhcccccceeeecCccc
Confidence            45678889999889999999873    348999999999999999999999999999998753322210  111110   


Q ss_pred             -----------ccceEEEEEEEEEecCCccccC-----CccccceEEEEeHhhHhcCCCcccchHHHHHHHHHHh
Q 039665          197 -----------FFRKSDLFFVCMLRPRNFHIQK-----QDSEIAAAQWMQAEDYAAQPYVLKHQMFNYICQICLT  255 (275)
Q Consensus       197 -----------~~~~~~~~f~~~~~~~~~~~~~-----~~~E~~~~~Wv~~eel~~~~~~~~~~~~~~~~~~~~~  255 (275)
                                 ..+...++|++........+..     +++|+.+++|++++++.++..+.....++.+++.+..
T Consensus        89 ~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~E~~~~~W~~~~el~~~~~~~~~~~~~~~~~~l~~  163 (165)
T 1f3y_A           89 REKLNIQWGSDWKGQAQKWFLFKFTGQDQEINLLGDGSEKPEFGEWSWVTPEQLIDLTVEFKKPVYKEVLSVFAP  163 (165)
T ss_dssp             HHHHGGGSCSSCCSCBEEEEEEEECSCGGGCCCCCCSSSCCSEEEEEEECHHHHHHHBCGGGHHHHHHHHHHHGG
T ss_pred             cccccccccccccCceEEEEEEEecCCcccccccCCCCCCChhheeEEecHHHHHHHhhhhhHHHHHHHHHHhhh
Confidence                       0123567888877654434433     3678999999999999998766555566666655443

>2yvp_A NDX2, MUTT/nudix family protein; nudix protein, ADP-ribose, FAD, hydrol structural genomics, NPPSFA; HET: RBY; 1.66A {Thermus thermophilus} PDB: 2yvn_A 2yvm_A* 2yvo_A*

Probab=99.85  E-value=1.1e-21  Score=162.20  Aligned_cols=119  Identities=19%  Similarity=0.167  Sum_probs=93.5

Q ss_pred             ceeEEEEEEEeCCceEEEEEEecCCCCCCCceeCcceeccCCCCHHHHHHHHHHHHhCCCcceeEEEEEEeeeccccceE
Q 039665          122 HRVGVGAFVMNNKRELLVVQENNGALKGTGVWKLPTGTIEEGEDICAAAVREVKEETGIDTEFVEVLAFRQSHRSFFRKS  201 (275)
Q Consensus       122 ~~v~v~~vv~~~~~~vLLv~r~~~~~~~~~~w~lPgG~ve~gEs~~~aA~REl~EEtGl~~~~~~~l~~~~~~~~~~~~~  201 (275)
                      +..+|++++++.+++|||++|.+.+ .+++.|+||||++++||++.+||+||++||||+.+..+..++.+..........
T Consensus        40 ~~~~v~v~i~~~~~~vLL~~r~~~~-~~~~~w~~PgG~ve~gEs~~~aa~REl~EEtGl~~~~~~~l~~~~~~~~~~~~~  118 (182)
T 2yvp_A           40 PVAASFVLPVTERGTALLVRQYRHP-TGKFLLEVPAGKVDEGETPEAAARRELREEVGAEAETLIPLPSFHPQPSFTAVV  118 (182)
T ss_dssp             SCEEEEEEEBCTTSEEEEEEEEEGG-GTEEEEECCEEECCTTCCHHHHHHHHHHHHHCEECSCEEECCCBCSCTTTBCCE
T ss_pred             cCCEEEEEEEcCCCEEEEEEeccCC-CCCcEEEeccccCCCCcCHHHHHHHHHHHHhCCCcccEEEEEEEeCCCCccccE
Confidence            3457888888888999999998654 357899999999999999999999999999999998888887665555544566


Q ss_pred             EEEEEEEEecCCccccCCccccceEEEEeHhhHhcCCCcc
Q 039665          202 DLFFVCMLRPRNFHIQKQDSEIAAAQWMQAEDYAAQPYVL  241 (275)
Q Consensus       202 ~~~f~~~~~~~~~~~~~~~~E~~~~~Wv~~eel~~~~~~~  241 (275)
                      .++|+|........+..++.|+.++.|++++++.++....
T Consensus       119 ~~~f~~~~~~~~~~~~~~~~E~~~~~W~~~~el~~~~~~~  158 (182)
T 2yvp_A          119 FHPFLALKARVVTPPTLEEGELLESLELPLTEVYALLAKG  158 (182)
T ss_dssp             EEEEEECSCEECSCCCCCTTCCEEEEEEEHHHHHHHHHTT
T ss_pred             EEEEEEeccccCCCCCCCCCceEEEEEEEHHHHHHHHHcC
Confidence            6777775322123344567899999999999998875443

>1mk1_A ADPR pyrophosphatase; nudix hydrolase, adprase, adenosine DI ribose, RV1700, hydrolase; HET: APR; 2.00A {Mycobacterium tuberculosis} SCOP: d.113.1.1 PDB: 1mp2_A 1mqe_A* 1mqw_A* 1mr2_A*

Probab=99.85  E-value=2.2e-21  Score=164.16  Aligned_cols=153  Identities=16%  Similarity=0.229  Sum_probs=103.4

Q ss_pred             HHHHHhCCeeE----EEEccccccccchHHHhcCceeccCCCCeeeEEeecCCCcCCCCCCCcceeEEEEEEEeCCceEE
Q 039665           63 SLWRQQGKRGV----WIKLPIELANLVEPAVQEGFRYHHAEPDYLMLVYWIPETADVLPANASHRVGVGAFVMNNKRELL  138 (275)
Q Consensus        63 ~~w~~~~~~~v----W~~~~~~~~~l~~~~~~~gf~~~~~~~~~~~l~~wl~~~~~~~p~~~~~~v~v~~vv~~~~~~vL  138 (275)
                      ..|+..+++.+    |+++....+.+  +.... .     ..+++                 .+..+|++++++.+++||
T Consensus         4 ~~~~~~~~~~~~~~~~~~~~~~~~~~--p~G~~-~-----~~~~~-----------------~~~~av~v~i~~~~~~vL   58 (207)
T 1mk1_A            4 HDFETISSETLHTGAIFALRRDQVRM--PGGGI-V-----TREVV-----------------EHFGAVAIVAMDDNGNIP   58 (207)
T ss_dssp             --CCEEEEEEEEECSSEEEEEEEEC-------C-E-----EEEEE-----------------EECCEEEEEECCTTSEEE
T ss_pred             CCcEEEeEEEEEeCCEEEEEEEEEEC--CCCCE-E-----EEEEE-----------------eCCCEEEEEEEcCCCEEE
Confidence            46777777776    89998888877  32111 1     11111                 123468888888889999


Q ss_pred             EEEEecCCCCCCCceeCcceecc-CCCCHHHHHHHHHHHHhCCCcceeEEEEEEeeeccccceEEEEEEEEEecCCccc-
Q 039665          139 VVQENNGALKGTGVWKLPTGTIE-EGEDICAAAVREVKEETGIDTEFVEVLAFRQSHRSFFRKSDLFFVCMLRPRNFHI-  216 (275)
Q Consensus       139 Lv~r~~~~~~~~~~w~lPgG~ve-~gEs~~~aA~REl~EEtGl~~~~~~~l~~~~~~~~~~~~~~~~f~~~~~~~~~~~-  216 (275)
                      |++|++.+ .+++.|+||||+++ +||++.+||+||++||||+.+..+..++.++..........++|+|......... 
T Consensus        59 Lvrr~r~~-~~~~~w~lPgG~ve~~gEs~~~aa~REl~EEtGl~~~~~~~l~~~~~~~~~~~~~~~~f~~~~~~~~~~~~  137 (207)
T 1mk1_A           59 MVYQYRHT-YGRRLWELPAGLLDVAGEPPHLTAARELREEVGLQASTWQVLVDLDTAPGFSDESVRVYLATGLREVGRPE  137 (207)
T ss_dssp             EEEEEETT-TTEEEEECCEEECCSTTCCHHHHHHHHHHHHHCEEEEEEEEEEEECSCTTTBCCCEEEEEEEEEEECCC--
T ss_pred             EEEeecCC-CCCcEEEeCCccccCCCCCHHHHHHHHHHHHHCCcccccEEEEEEEcCCCccccEEEEEEEEccccCCCCC
Confidence            99998765 36789999999999 9999999999999999999999888887665444443445677777543322111 


Q ss_pred             cCCccccceEEEEeHhhHhcCCCcc
Q 039665          217 QKQDSEIAAAQWMQAEDYAAQPYVL  241 (275)
Q Consensus       217 ~~~~~E~~~~~Wv~~eel~~~~~~~  241 (275)
                      ..+++|+.++.|++++++.++....
T Consensus       138 ~~~~~E~~~~~Wv~~~el~~~~~~~  162 (207)
T 1mk1_A          138 AHHEEADMTMGWYPIAEAARRVLRG  162 (207)
T ss_dssp             --------CEEEEEHHHHHHHHHTT
T ss_pred             CCCCCceEEEEEEEHHHHHHHHHcC
Confidence            2456789999999999999875543

>2b0v_A Nudix hydrolase; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG, U function; 1.55A {Nitrosomonas europaea} SCOP: d.113.1.1

Probab=99.84  E-value=5.1e-20  Score=147.30  Aligned_cols=130  Identities=21%  Similarity=0.192  Sum_probs=93.1

Q ss_pred             eeEEEEEEEeCCceEEEEEEecCCCCCCCceeCcceeccCCCCHHHHHHHHHHHHhCCCcceeEEEEEEeeeccc--cce
Q 039665          123 RVGVGAFVMNNKRELLVVQENNGALKGTGVWKLPTGTIEEGEDICAAAVREVKEETGIDTEFVEVLAFRQSHRSF--FRK  200 (275)
Q Consensus       123 ~v~v~~vv~~~~~~vLLv~r~~~~~~~~~~w~lPgG~ve~gEs~~~aA~REl~EEtGl~~~~~~~l~~~~~~~~~--~~~  200 (275)
                      +++|++++. .+++|||++|.+.+.  ++.|.||||++++||++.+||+||++||||+.+....+++........  ...
T Consensus         8 ~~~v~~ii~-~~~~vLl~~r~~~~~--~~~w~lPgG~ve~gE~~~~aa~RE~~EEtGl~~~~~~~~~~~~~~~~~~~~~~   84 (153)
T 2b0v_A            8 NVTVAAVIE-QDDKYLLVEEIPRGT--AIKLNQPAGHLEPGESIIQACSREVLEETGHSFLPEVLTGIYHWTCASNGTTY   84 (153)
T ss_dssp             EEEEEEECE-ETTEEEEEEECSSSS--CCEEECSEEECCTTSCHHHHHHHHHHHHHSEEEEEEEEEEEEEEEETTTTEEE
T ss_pred             CEEEEEEEe-eCCEEEEEEEcCCCC--CCeEECCCcCcCCCCCHHHHHHHHHHHhhCcEeccceEEEEEEEeCCCCCcEE
Confidence            455655554 578999999986542  789999999999999999999999999999999988888876433322  123


Q ss_pred             EEEEEEEEEecCCccccCCccccceEEEEeHhhHhcCCCcccchHHHHHHHHHHhh
Q 039665          201 SDLFFVCMLRPRNFHIQKQDSEIAAAQWMQAEDYAAQPYVLKHQMFNYICQICLTK  256 (275)
Q Consensus       201 ~~~~f~~~~~~~~~~~~~~~~E~~~~~Wv~~eel~~~~~~~~~~~~~~~~~~~~~~  256 (275)
                      ..++|.|...... ....++.|+.+++|++++++.++......+.++.++..+++.
T Consensus        85 ~~~~f~~~~~~~~-~~~~~~~e~~~~~W~~~~el~~~~~~~~~~~~~~~l~~~~~~  139 (153)
T 2b0v_A           85 LRFTFSGQVVSFD-PDRKLDTGIVRAAWFSIDEIRAKQAMHRTPLVMQCIEDYHAG  139 (153)
T ss_dssp             EEEEEEEEEEEEC-TTSCCCTTEEEEEEEEHHHHHHTGGGBSSTHHHHHHHHHHTT
T ss_pred             EEEEEEEEeCCCC-CCCCCCCCeeeEEEecHHHHhhhhcccCcHHHHHHHHHHHhC
Confidence            3445666544222 113356788999999999999973233344666777666643

>2fb1_A Conserved hypothetical protein; structural genomics, PSI, protein STRU initiative, midwest center for structural genomics, MCSG; 2.50A {Bacteroides thetaiotaomicron} SCOP: a.4.5.68 d.113.1.6

Probab=99.84  E-value=9.3e-21  Score=162.60  Aligned_cols=137  Identities=17%  Similarity=0.291  Sum_probs=100.7

Q ss_pred             CCCCCcceeEEEEEEE---eCCceEEEEEEecCCCCCCCceeCcceeccCCCCHHHHHHHHHHHHhCCCcceeEEEEEEe
Q 039665          116 LPANASHRVGVGAFVM---NNKRELLVVQENNGALKGTGVWKLPTGTIEEGEDICAAAVREVKEETGIDTEFVEVLAFRQ  192 (275)
Q Consensus       116 ~p~~~~~~v~v~~vv~---~~~~~vLLv~r~~~~~~~~~~w~lPgG~ve~gEs~~~aA~REl~EEtGl~~~~~~~l~~~~  192 (275)
                      ++.+..+.++|+++|+   +++++|||++|.+.+  ..|.|.||||++++||++.+||+||++||||+.+..++.++.+.
T Consensus         6 ~~~~~~p~v~v~~vi~~~~~~~~~vLLv~r~~~~--~~g~w~lPGG~ve~gEs~~~Aa~REl~EEtGl~~~~~~~l~~~~   83 (226)
T 2fb1_A            6 YSSNPTFYLGIDCIIFGFNEGEISLLLLKRNFEP--AMGEWSLMGGFVQKDESVDDAAKRVLAELTGLENVYMEQVGAFG   83 (226)
T ss_dssp             TTTSCCEEEEEEEEEEEEETTEEEEEEEECSSSS--STTCEECEEEECCTTSCHHHHHHHHHHHHHCCCSCEEEEEEEEC
T ss_pred             cccCCCCeEEEEEEEEEEeCCCCEEEEEECcCCC--CCCCEECCeeccCCCCCHHHHHHHHHHHHHCCCCCceEEEEEeC
Confidence            4455577888998888   456899999998643  56899999999999999999999999999999999888888775


Q ss_pred             eeccc--cceEEEEEEEEEecCCccccCCccccceEEEEeHhhHhcCCCcccchHHHHHHHHHHhhc
Q 039665          193 SHRSF--FRKSDLFFVCMLRPRNFHIQKQDSEIAAAQWMQAEDYAAQPYVLKHQMFNYICQICLTKS  257 (275)
Q Consensus       193 ~~~~~--~~~~~~~f~~~~~~~~~~~~~~~~E~~~~~Wv~~eel~~~~~~~~~~~~~~~~~~~~~~~  257 (275)
                      .....  .....++|+|....  .....+++|+.++.|++++++.++.+.+ ..++...+..+.+++
T Consensus        84 ~~~r~~~~~~v~~~y~a~~~~--~~~~~~~~e~~~~~W~~~~el~~l~~dh-~~il~~a~~rlr~~~  147 (226)
T 2fb1_A           84 AIDRDPGERVVSIAYYALINI--NEYDRELVQKHNAYWVNINELPALIFDH-PEMVDKAREMMKQKA  147 (226)
T ss_dssp             CTTSSSSSCEEEEEEEEECCT--TSSCHHHHHHTTEEEEETTSCCCBSTTH-HHHHHHHHHHHHHHH
T ss_pred             CCCcCCCceEEEEEEEEEecC--cccccCCccccceEEEEHHHhhhccCCH-HHHHHHHHHHHHhhc
Confidence            43322  12334456665432  2222345788999999999999887764 245555555554443

>3oga_A Nucleoside triphosphatase NUDI; salmonella enterica subsp. enterica serovar typhimurium STR. unknown function; HET: PO4; 1.75A {Salmonella enterica subsp} PDB: 3n77_A

Probab=99.84  E-value=4.7e-20  Score=149.86  Aligned_cols=118  Identities=19%  Similarity=0.243  Sum_probs=79.2

Q ss_pred             eEEEEEEEeCCceEEEEEEecCCCCCCCceeCcceeccCCCCHHHHHHHHHHHHhCCCcceeEEEEEEe------eeccc
Q 039665          124 VGVGAFVMNNKRELLVVQENNGALKGTGVWKLPTGTIEEGEDICAAAVREVKEETGIDTEFVEVLAFRQ------SHRSF  197 (275)
Q Consensus       124 v~v~~vv~~~~~~vLLv~r~~~~~~~~~~w~lPgG~ve~gEs~~~aA~REl~EEtGl~~~~~~~l~~~~------~~~~~  197 (275)
                      ..+.+++++.+++|||++|.......++.|+||||++++||++.+||+||++||||+.+....+++...      ..+..
T Consensus        28 ~~~~~~ii~~~~~vLL~~r~~~~~~~~g~w~lPgG~ve~gE~~~~aa~REl~EEtGl~~~~~~~~~~~~~~~~~~~~~~~  107 (165)
T 3oga_A           28 RTIVCPLIQNDGCYLLCKMADNRGVFPGQWALSGGGVEPGERIEEALRREIREELGEQLILSDITPWTFRDDIRIKTYAD  107 (165)
T ss_dssp             EEEEEEEEEETTEEEEEEECC------CCEECCCEECCTTCCHHHHHHHHHHHHHCSSCCEEEEEEEEEEEEEEEEEC--
T ss_pred             EEEEEEEEeCCCEEEEEEecCCCCCCCCeEECCccccCCCCCHHHHHHHHHHHHhCCCccccceeeeeeecceeeEecCC
Confidence            345555666678999999875543467999999999999999999999999999999998777665321      12222


Q ss_pred             cc---eEEEEEEEEEecCCccccCCccccceEEEEeHhhHhcCCCccc
Q 039665          198 FR---KSDLFFVCMLRPRNFHIQKQDSEIAAAQWMQAEDYAAQPYVLK  242 (275)
Q Consensus       198 ~~---~~~~~f~~~~~~~~~~~~~~~~E~~~~~Wv~~eel~~~~~~~~  242 (275)
                      ..   ...+++++.+......+. .++|+.+++|++++++.++++...
T Consensus       108 ~~~~~~~~~~~~~~~~~~~~~~~-~~~E~~~~~W~~~~el~~~~~~~~  154 (165)
T 3oga_A          108 GRQEEIYMIYLIFDCVSANRDIC-INDEFQDYAWVKPEELALYDLNVA  154 (165)
T ss_dssp             CCEEEEEEEEEEEEEEESCCCCC-CCTTEEEEEEECGGGGGGSCBCHH
T ss_pred             CCceeEEEEEEEEEeeccCCCcc-CCchheeeEEccHHHHhhCCCCHH
Confidence            11   112222333333333333 347889999999999999887654

>1vhz_A ADP compounds hydrolase NUDE; structural genomics; HET: APR; 2.32A {Escherichia coli} SCOP: d.113.1.1 PDB: 1vhg_A*

Probab=99.84  E-value=2.1e-20  Score=157.16  Aligned_cols=115  Identities=17%  Similarity=0.126  Sum_probs=92.6

Q ss_pred             eEEEEEEEeCCceEEEEEEecCCCCCCCceeCcceeccCCCCHHHHHHHHHHHHhCCCcceeEEEEEEeeeccccceEEE
Q 039665          124 VGVGAFVMNNKRELLVVQENNGALKGTGVWKLPTGTIEEGEDICAAAVREVKEETGIDTEFVEVLAFRQSHRSFFRKSDL  203 (275)
Q Consensus       124 v~v~~vv~~~~~~vLLv~r~~~~~~~~~~w~lPgG~ve~gEs~~~aA~REl~EEtGl~~~~~~~l~~~~~~~~~~~~~~~  203 (275)
                      .+|++++++++ +|||++|++.+. .++.|+||||++|+||++.+||+||++||||+.+..+..++.+...+.......+
T Consensus        50 ~av~vl~~~~~-~vLLvrq~r~~~-~~~~welPgG~ve~gEs~~~aA~REl~EEtGl~~~~~~~l~~~~~~~~~~~~~~~  127 (198)
T 1vhz_A           50 EAVMIVPIVDD-HLILIREYAVGT-ESYELGFSKGLIDPGESVYEAANRELKEEVGFGANDLTFLKKLSMAPSYFSSKMN  127 (198)
T ss_dssp             CEEEEEEEETT-EEEEEEEEETTT-TEEEEECEEEECCTTCCHHHHHHHHHHHHHSEEEEEEEEEEEEECCTTTCCCEEE
T ss_pred             CEEEEEEEECC-EEEEEEcccCCC-CCcEEEeCcccCCCCcCHHHHHHHHHHHHHCCCcCceEEEEEEeCCCCccCcEEE
Confidence            45777778876 999999986543 5789999999999999999999999999999999989988887766665566677


Q ss_pred             EEEEEEecCCccccCCccccceEEEEeHhhHhcCCCcc
Q 039665          204 FFVCMLRPRNFHIQKQDSEIAAAQWMQAEDYAAQPYVL  241 (275)
Q Consensus       204 ~f~~~~~~~~~~~~~~~~E~~~~~Wv~~eel~~~~~~~  241 (275)
                      +|+|..... .....++.|..++.|++++++.++....
T Consensus       128 ~f~a~~~~~-~~~~~~~~E~~~~~w~~~~el~~~~~~~  164 (198)
T 1vhz_A          128 IVVAQDLYP-ESLEGDEPEPLPQVRWPLAHMMDLLEDP  164 (198)
T ss_dssp             EEEEEEEEE-CCCCCCCSSCCCEEEEEGGGGGGGGGCT
T ss_pred             EEEEEeCCc-ccCCCCCCceEEEEEEEHHHHHHHHHcC
Confidence            888864322 2334567888999999999999886544

>2kdv_A RNA pyrophosphohydrolase; nudix family, magnesium, manganese, zinc; NMR {Escherichia coli} PDB: 2kdw_A

Probab=99.84  E-value=6.1e-20  Score=149.68  Aligned_cols=132  Identities=20%  Similarity=0.312  Sum_probs=99.2

Q ss_pred             cceeEEEEEEEeCCceEEEEEEecCCCCCCCceeCcceeccCCCCHHHHHHHHHHHHhCCCcceeEEEEEEee-----ec
Q 039665          121 SHRVGVGAFVMNNKRELLVVQENNGALKGTGVWKLPTGTIEEGEDICAAAVREVKEETGIDTEFVEVLAFRQS-----HR  195 (275)
Q Consensus       121 ~~~v~v~~vv~~~~~~vLLv~r~~~~~~~~~~w~lPgG~ve~gEs~~~aA~REl~EEtGl~~~~~~~l~~~~~-----~~  195 (275)
                      ..+.+|++++++.+++|||++|..     .+.|.||||++++||++.+||+||++||||+.+....+++....     .+
T Consensus         6 ~~~~~v~~~i~~~~~~vLl~~r~~-----~~~w~~p~G~~e~gE~~~~aa~RE~~EE~G~~~~~~~~~~~~~~~~~~~~~   80 (164)
T 2kdv_A            6 GYRPNVGIVICNRQGQVMWARRFG-----QHSWQFPQGGINPGESAEQAMYRELFEEVGLSRKDVRILASTRNWLRYKLP   80 (164)
T ss_dssp             SEEEEEEEEEECTTSEEEEEEETT-----CCCEECCEEECCTTCCHHHHHHHHHHHHHCCCGGGEEEEEECSSCEEEECC
T ss_pred             CCCcEEEEEEEccCCEEEEEEEcC-----CCeEECCeeecCCCCCHHHHHHHHHHHHHCCCccceEEEEEecceeEEecC
Confidence            346678889999889999998872     57899999999999999999999999999999998888876532     11


Q ss_pred             c----------ccceEEEEEEEEEecCCccccCC---ccccceEEEEeHhhHhcCCCcccchHHHHHHHHHHhhc
Q 039665          196 S----------FFRKSDLFFVCMLRPRNFHIQKQ---DSEIAAAQWMQAEDYAAQPYVLKHQMFNYICQICLTKS  257 (275)
Q Consensus       196 ~----------~~~~~~~~f~~~~~~~~~~~~~~---~~E~~~~~Wv~~eel~~~~~~~~~~~~~~~~~~~~~~~  257 (275)
                      .          ..+...++|+|.+......+.++   ..|+.+++|++++++.+........+++.++..+...+
T Consensus        81 ~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~l~~~~~~E~~~~~W~~~~e~~~~l~~~~~~~~~~~l~~l~~~l  155 (164)
T 2kdv_A           81 KRLVRWDTKPVCIGQKQKWFLLQLVSGDAEINMQTSSTPEFDGWRWVSYWYPVRQVVSFKRDVYRRVMKEFASVV  155 (164)
T ss_dssp             TTTCCTTSSSCCCEEEEEEEEEEESSCGGGCCSCSSSSCSEEEEEEEETTTGGGGSCHHHHHHHHHHHHHHHHHH
T ss_pred             cceeeeccCcccccceeEEEEEEecCCccccccCCCCCchhceEEEecHHHhhhhhhhhhHHHHHHHHHHHHHHH
Confidence            1          11235678888765444344443   35899999999999877655444567777777666544

>1sjy_A MUTT/nudix family protein; nudix fold, alpha-beta-alpha sandwich, structural genomics, BSGC structure funded by NIH; 1.39A {Deinococcus radiodurans} SCOP: d.113.1.1 PDB: 1soi_A 1su2_A* 1sz3_A*

Probab=99.84  E-value=3.2e-20  Score=149.46  Aligned_cols=119  Identities=27%  Similarity=0.374  Sum_probs=92.5

Q ss_pred             cceeEEEEEEEeCCceEEEEEEecC--CCCCCCceeCcceeccCCCCHHHHHHHHHHHHhCCCcceeEEEEEEeeeccc-
Q 039665          121 SHRVGVGAFVMNNKRELLVVQENNG--ALKGTGVWKLPTGTIEEGEDICAAAVREVKEETGIDTEFVEVLAFRQSHRSF-  197 (275)
Q Consensus       121 ~~~v~v~~vv~~~~~~vLLv~r~~~--~~~~~~~w~lPgG~ve~gEs~~~aA~REl~EEtGl~~~~~~~l~~~~~~~~~-  197 (275)
                      ....++++++++.+++|||++|.+.  ....++.|+||||++++||++.+||+||++||||+.+....+++........ 
T Consensus        11 ~~~~~~~~vi~~~~~~vLl~~r~~~~~~~~~~~~w~~PgG~ve~gE~~~~aa~RE~~EEtGl~~~~~~~l~~~~~~~~~~   90 (159)
T 1sjy_A           11 VELRAAGVVLLNERGDILLVQEKGIPGHPEKAGLWHIPSGAVEDGENPQDAAVREACEETGLRVRPVKFLGAYLGRFPDG   90 (159)
T ss_dssp             CCEEEEEEEEBCTTCCEEEEEESCC----CCCCCEECSEEECCTTSCHHHHHHHHHHHHHSCCEEEEEEEEEEEEECTTS
T ss_pred             eEEEeEEEEEEeCCCCEEEEEecccCcCCCCCCeEECCccccCCCCCHHHHHHHHHHHHHCccceeeEEEEEEecccCCC
Confidence            3456788888888899999999852  2235689999999999999999999999999999999988888877654333 


Q ss_pred             cceEEEEEEEEEecCCcc-ccC-CccccceEEEEeHhhHhcCCCcc
Q 039665          198 FRKSDLFFVCMLRPRNFH-IQK-QDSEIAAAQWMQAEDYAAQPYVL  241 (275)
Q Consensus       198 ~~~~~~~f~~~~~~~~~~-~~~-~~~E~~~~~Wv~~eel~~~~~~~  241 (275)
                      .....++|.|....  .. +.. +++|+.++.|++++++.++....
T Consensus        91 ~~~~~~~f~~~~~~--~~~~~~~~~~E~~~~~W~~~~el~~~~~~~  134 (159)
T 1sjy_A           91 VLILRHVWLAEPEP--GQTLAPAFTDEIAEASFVSREDFAQLYAAG  134 (159)
T ss_dssp             CEEEEEEEEEEECS--SCCCCCCCCSSEEEEEEECHHHHHHHHHTT
T ss_pred             ceEEEEEEEEEccC--CCccccCCCCceeEEEEecHHHHHHhhhcc
Confidence            34556677776532  23 444 67789999999999999875544

>3son_A Hypothetical nudix hydrolase; structural genomics, joint center for structural GENO JCSG, protein structure initiative, PSI-biology; HET: MSE; 1.71A {Listeria monocytogenes}

Probab=99.84  E-value=2.7e-20  Score=148.63  Aligned_cols=125  Identities=16%  Similarity=0.182  Sum_probs=86.4

Q ss_pred             eEEEEEEE---eCCceEEEEEEecCCCCCCCceeCcceeccCCCCHHHHHHHHHHHHhCCCccee--EEEEEEee---e-
Q 039665          124 VGVGAFVM---NNKRELLVVQENNGALKGTGVWKLPTGTIEEGEDICAAAVREVKEETGIDTEFV--EVLAFRQS---H-  194 (275)
Q Consensus       124 v~v~~vv~---~~~~~vLLv~r~~~~~~~~~~w~lPgG~ve~gEs~~~aA~REl~EEtGl~~~~~--~~l~~~~~---~-  194 (275)
                      .+|.++++   +++++|||++|.+     .+.|.||||++++||++.+||+||++||||+.+...  .+......   . 
T Consensus         6 ~~v~vvi~~~~~~~~~vLl~~r~~-----~g~w~~PgG~ve~gE~~~~aa~REl~EEtGl~~~~~~~~~~~~~~~~~~~~   80 (149)
T 3son_A            6 FQVLVIPFIKTEANYQFGVLHRTD-----ADVWQFVAGGGEDEEAISETAKRESIEELNLDVDVKMYSLDSHASIPNFHF   80 (149)
T ss_dssp             CEEEEEEEEECSSSEEEEEEEESS-----SSCEECEEEECCTTCCHHHHHHHHHHHHHTCCSCCCEEEEEEEEEEEGGGT
T ss_pred             eEEEEEEEEecCCCeEEEEEEEcC-----CCCEeCCccccCCCCCHHHHHHHHHHHHhCCCcccceEEEEeeecccceee
Confidence            45656665   4668999999984     389999999999999999999999999999998764  22222111   1 


Q ss_pred             --ccccceEEEEEEEEEecCCccccCCccccceEEEEeHhhHhcCCCcccchHHHHHHHHHHhhc
Q 039665          195 --RSFFRKSDLFFVCMLRPRNFHIQKQDSEIAAAQWMQAEDYAAQPYVLKHQMFNYICQICLTKS  257 (275)
Q Consensus       195 --~~~~~~~~~~f~~~~~~~~~~~~~~~~E~~~~~Wv~~eel~~~~~~~~~~~~~~~~~~~~~~~  257 (275)
                        ........++|+|......+.+.. ++|+.+++|++++++.++.....   .+.++..+.+.+
T Consensus        81 ~~~~~~~~~~~~f~~~~~~~~~~~~~-~~E~~~~~W~~~~el~~~~~~~~---~~~~l~~~~~~l  141 (149)
T 3son_A           81 SFNKPYVVPEYCFAIDLTSCSYQVTL-SLEHSELRWVSYESAIQLLEWDS---NKTALYELNERL  141 (149)
T ss_dssp             CSSSCSEEEEEEEEEECTTTGGGCCC-CTTEEEEEEECHHHHHHHCCCHH---HHHHHHHHHHHH
T ss_pred             ccCCceEeEEEEEEEEcCCCCCcccC-CCceeeEEEeCHHHHHHHhcCHH---HHHHHHHHHHHH
Confidence              111234456677765433445544 58899999999999998876543   344455444444

>2yyh_A MUTT domain, 8-OXO-DGTPase domain; nudix family protein, structural genomics, NPPSFA, national on protein structural and functional analyses; 1.80A {Aquifex aeolicus}

Probab=99.83  E-value=7.8e-20  Score=144.29  Aligned_cols=113  Identities=14%  Similarity=0.207  Sum_probs=86.9

Q ss_pred             CcceeEEEEEEEe--CCce--EEEEEEecCCCCCCCceeCcceeccCCCCHHHHHHHHHHHHhCCCcceeEEEEEEeeec
Q 039665          120 ASHRVGVGAFVMN--NKRE--LLVVQENNGALKGTGVWKLPTGTIEEGEDICAAAVREVKEETGIDTEFVEVLAFRQSHR  195 (275)
Q Consensus       120 ~~~~v~v~~vv~~--~~~~--vLLv~r~~~~~~~~~~w~lPgG~ve~gEs~~~aA~REl~EEtGl~~~~~~~l~~~~~~~  195 (275)
                      ..+.++|+++|++  .+++  |||++|.+.+    +.|+||||++++||++.+||+||++||||+.+....+++.+....
T Consensus         6 ~~p~~~v~~vi~~~~~~~~~~vLl~~r~~~~----~~w~~PgG~ve~gE~~~~aa~RE~~EEtGl~~~~~~~~~~~~~~~   81 (139)
T 2yyh_A            6 KTPLLATDVIIRLWDGENFKGIVLIERKYPP----VGLALPGGFVEVGERVEEAAAREMREETGLEVRLHKLMGVYSDPE   81 (139)
T ss_dssp             CCCEEEEEEEEEEEETTEEEEEEEEEECSSS----CSEECCEEECCTTCCHHHHHHHHHHHHHCCCCEEEEEEEEECCTT
T ss_pred             cCCeEEEEEEEEEEcCCCcEEEEEEEecCCC----CcEECccccCCCCCCHHHHHHHHHHHHHCCCcccceEEEEECCCC
Confidence            3456778888887  6788  9999997532    349999999999999999999999999999998888887665432


Q ss_pred             cc--cceEEEEEEEEEecCCccccCCccccceEEEEeHhhHh--cCCCc
Q 039665          196 SF--FRKSDLFFVCMLRPRNFHIQKQDSEIAAAQWMQAEDYA--AQPYV  240 (275)
Q Consensus       196 ~~--~~~~~~~f~~~~~~~~~~~~~~~~E~~~~~Wv~~eel~--~~~~~  240 (275)
                      ..  .....++|+|...   +.+. .++|+.+++|++++++.  .+.++
T Consensus        82 ~~~~~~~~~~~f~~~~~---~~~~-~~~e~~~~~W~~~~el~~~~l~~~  126 (139)
T 2yyh_A           82 RDPRAHVVSVVWIGDAQ---GEPK-AGSDAKKVKVYRLEEIPLDKLVFD  126 (139)
T ss_dssp             SCTTSCEEEEEEEEEEE---SCCC-CCTTEEEEEEECTTSCCGGGBCTT
T ss_pred             cCCCceEEEEEEEEecC---CccC-CCCCcceEEEEEHHHCCHhhcCCC
Confidence            21  3345667777662   2232 46788999999999999  66654

>3q1p_A Phosphohydrolase (MUTT/nudix family protein); asymmetric dimer, RNA exonuclease, CDP-CHO pyrophosphatase; 1.80A {Bacillus cereus} PDB: 3q4i_A

Probab=99.83  E-value=5.4e-20  Score=155.40  Aligned_cols=127  Identities=20%  Similarity=0.307  Sum_probs=94.9

Q ss_pred             CcceeEEEEEEEeCCceEEEEEEecCCCCCCCceeCcceeccCCCCHHHHHHHHHHHHhCCCcceeEEEEEEeeec----
Q 039665          120 ASHRVGVGAFVMNNKRELLVVQENNGALKGTGVWKLPTGTIEEGEDICAAAVREVKEETGIDTEFVEVLAFRQSHR----  195 (275)
Q Consensus       120 ~~~~v~v~~vv~~~~~~vLLv~r~~~~~~~~~~w~lPgG~ve~gEs~~~aA~REl~EEtGl~~~~~~~l~~~~~~~----  195 (275)
                      .+++++|+++|++ +++|||++|.     ..|.|.||||++|+||++.+||+||++||||+.+....+++......    
T Consensus        65 ~~~~~~v~~vv~~-~~~vLLv~r~-----~~g~w~lPgG~ve~gEs~~~aa~REl~EEtGl~v~~~~~l~~~~~~~~~~~  138 (205)
T 3q1p_A           65 QTPKVDIRAVVFQ-NEKLLFVKEK-----SDGKWALPGGWADVGYTPTEVAAKEVFEETGYEVDHFKLLAIFDKEKHQPS  138 (205)
T ss_dssp             CCCEEEEEEEEEE-TTEEEEEEC--------CCEECSEEECCTTCCHHHHHHHHHHHHHSEEEEEEEEEEEEEHHHHSCC
T ss_pred             CCCcceEEEEEEE-CCEEEEEEEc-----CCCcEECCcCccCCCCCHHHHHHHHHHHHHCCccccceEEEEEeccccCCC
Confidence            3557788888988 6899999987     35799999999999999999999999999999999888888776432    


Q ss_pred             -cccceEEEEEEEEEecCCccccCCccccceEEEEeHhhHhcCCCcccchHHHHHHHHHHhhcc
Q 039665          196 -SFFRKSDLFFVCMLRPRNFHIQKQDSEIAAAQWMQAEDYAAQPYVLKHQMFNYICQICLTKSE  258 (275)
Q Consensus       196 -~~~~~~~~~f~~~~~~~~~~~~~~~~E~~~~~Wv~~eel~~~~~~~~~~~~~~~~~~~~~~~~  258 (275)
                       ...+...++|.|....  +.+.. +.|..+++|++++++.++.....   .+..+..+++.+.
T Consensus       139 ~~~~~~~~~~~~~~~~~--~~~~~-~~E~~~~~w~~~~el~~l~~~~~---~~~~i~~~~~~~~  196 (205)
T 3q1p_A          139 PSATHVYKIFIGCEIIG--GEKKT-SIETEEVEFFGENELPNLSIARN---TEDQIKEMFAYMK  196 (205)
T ss_dssp             CCSSCEEEEEEEEEEEE--ECCCC-CTTSCCEEEECTTSCCCBCTTTC---CHHHHHHHHHHHH
T ss_pred             CCCceEEEEEEEEEecC--CccCC-CCcceEEEEEeHHHhhhcCCCcc---HHHHHHHHHHHHh
Confidence             2234556777776643  23333 37899999999999998876554   3344555555443

>3shd_A Phosphatase NUDJ; nudix fold, nudix motif, hydrolase, (D)NDP/(D)NTP binding, dephosphorylation; 2.50A {Escherichia coli} PDB: 3dku_A

Probab=99.83  E-value=2.2e-19  Score=143.83  Aligned_cols=130  Identities=25%  Similarity=0.365  Sum_probs=94.3

Q ss_pred             ceeEEEEEEEeCCceEEEEEEecCCCCCCCceeCcceeccCCCCHHHHHHHHHHHHhCCCcceeEEEEEEeeecc-ccce
Q 039665          122 HRVGVGAFVMNNKRELLVVQENNGALKGTGVWKLPTGTIEEGEDICAAAVREVKEETGIDTEFVEVLAFRQSHRS-FFRK  200 (275)
Q Consensus       122 ~~v~v~~vv~~~~~~vLLv~r~~~~~~~~~~w~lPgG~ve~gEs~~~aA~REl~EEtGl~~~~~~~l~~~~~~~~-~~~~  200 (275)
                      ++++|++++.+ +++|||++|..   .+.+.|.||||++++||++.+||+||++||||+.+....+++....... ....
T Consensus         4 p~~~v~~ii~~-~~~vLl~~r~~---~~~~~w~~PgG~ve~gEs~~~aa~REl~EEtGl~~~~~~~~~~~~~~~~~~~~~   79 (153)
T 3shd_A            4 PHVTVACVVHA-EGKFLVVEETI---NGKALWNQPAGHLEADETLVEAAARELWEETGISAQPQHFIRMHQWIAPDKTPF   79 (153)
T ss_dssp             CEEEEEEEEEE-TTEEEEEEEEE---TTEEEEECSEEECCTTCCHHHHHHHHHHHHHCCCCCCCEEEEEEEECCTTSCCE
T ss_pred             CceEEEEEEEe-CCEEEEEEecC---CCCCCEECCeEEeCCCCCHHHHHHHHHHHHHCcccccCcEEEEEEEecCCCceE
Confidence            35556555554 78999999973   2568999999999999999999999999999999998888887644333 3334


Q ss_pred             EEEEEEEEEecCCccccCCccccceEEEEeHhhHhcCCCcccchHHHHHHHHHHhhc
Q 039665          201 SDLFFVCMLRPRNFHIQKQDSEIAAAQWMQAEDYAAQPYVLKHQMFNYICQICLTKS  257 (275)
Q Consensus       201 ~~~~f~~~~~~~~~~~~~~~~E~~~~~Wv~~eel~~~~~~~~~~~~~~~~~~~~~~~  257 (275)
                      ..++|+|...... ....++.|+.+++|++++++...+.. ..+.+...+..+++..
T Consensus        80 ~~~~f~~~~~~~~-~~~~~~~E~~~~~W~~~~el~~~~~~-~~~~~~~~l~~~~~~~  134 (153)
T 3shd_A           80 LRFLFAIELEQIC-PTQPHDSDIDCCRWVSAEEILQASNL-RSPLVAESIRCYQSGQ  134 (153)
T ss_dssp             EEEEEEEECSSCC-CCCCCSTTCCEEEEECHHHHHTCSCB-SSTHHHHHHHHHHHTC
T ss_pred             EEEEEEEEccccC-cCCCCcccceeeEEecHHHhhccccc-cCchHHHHHHHHHhCC
Confidence            5567777554322 24456789999999999999433222 2335666676666543

>1nqz_A COA pyrophosphatase (MUTT/nudix family protein); D.radiodurans, hydrolase; 1.70A {Deinococcus radiodurans} SCOP: d.113.1.1 PDB: 1nqy_A

Probab=99.83  E-value=4.3e-20  Score=154.25  Aligned_cols=117  Identities=17%  Similarity=0.161  Sum_probs=90.2

Q ss_pred             cceeEEEEEEEeCCc--eEEEEEEecCCCCCCCceeCcceeccCCCCHHHHHHHHHHHHhCCCcceeEEEEEEeeecccc
Q 039665          121 SHRVGVGAFVMNNKR--ELLVVQENNGALKGTGVWKLPTGTIEEGEDICAAAVREVKEETGIDTEFVEVLAFRQSHRSFF  198 (275)
Q Consensus       121 ~~~v~v~~vv~~~~~--~vLLv~r~~~~~~~~~~w~lPgG~ve~gEs~~~aA~REl~EEtGl~~~~~~~l~~~~~~~~~~  198 (275)
                      ..+.++++++++.++  +|||++|.+.....++.|.||||++++||++.+||+||++||||+++.....++.........
T Consensus        32 ~~~~~~~~v~i~~~~~~~vLL~~r~~~~~~~~g~w~lPgG~ve~gEs~~~aa~REl~EEtGl~~~~~~~l~~~~~~~~~~  111 (194)
T 1nqz_A           32 HYRRAAVLVALTREADPRVLLTVRSSELPTHKGQIAFPGGSLDAGETPTQAALREAQEEVALDPAAVTLLGELDDVFTPV  111 (194)
T ss_dssp             -CEEEEEEEEEESSSSCBBCEEEEC------CCCEECSEEECCTTCCHHHHHHHHHHHHHCCCGGGCEEEEECCCEEETT
T ss_pred             CCceEEEEEEEecCCCeEEEEEEecCCCCCCCCeEECCcccCCCCCCHHHHHHHHHHHHHCCCccceEEEEEccCccCCC
Confidence            455667777778777  899999976433367899999999999999999999999999999999999998877665555


Q ss_pred             ceEEEEEEEEEecCCcc-ccCCccccceEEEEeHhhH-hcCC
Q 039665          199 RKSDLFFVCMLRPRNFH-IQKQDSEIAAAQWMQAEDY-AAQP  238 (275)
Q Consensus       199 ~~~~~~f~~~~~~~~~~-~~~~~~E~~~~~Wv~~eel-~~~~  238 (275)
                      +...++|+|..... .. ...+++|+.++.|++++++ .+..
T Consensus       112 ~~~~~~f~~~~~~~-~~~~~~~~~E~~~~~W~~~~el~~~~~  152 (194)
T 1nqz_A          112 GFHVTPVLGRIAPE-ALDTLRVTPEVAQIITPTLAELRAVPL  152 (194)
T ss_dssp             TEEEEEEEEEECGG-GGGGCCCCTTEEEEECCBHHHHHHSCC
T ss_pred             CeEEEEEEEEecCC-ccccCCCccceeEEEEEEHHHhccCCC
Confidence            66677888866422 22 4456789999999999999 7653

>3i9x_A MUTT/nudix family protein; structural genomics, hydrolase, PSI-2, protein structure INI NEW YORK SGX research center for structural genomics; 2.20A {Listeria innocua}

Probab=99.83  E-value=2.7e-20  Score=154.79  Aligned_cols=131  Identities=15%  Similarity=0.180  Sum_probs=89.8

Q ss_pred             eEEEEEEEe---C----CceEEEEEEec-----CCCCCCCceeCcceeccCCCCHHHHHHHHHHHHhCCCcceeEEEEEE
Q 039665          124 VGVGAFVMN---N----KRELLVVQENN-----GALKGTGVWKLPTGTIEEGEDICAAAVREVKEETGIDTEFVEVLAFR  191 (275)
Q Consensus       124 v~v~~vv~~---~----~~~vLLv~r~~-----~~~~~~~~w~lPgG~ve~gEs~~~aA~REl~EEtGl~~~~~~~l~~~  191 (275)
                      ++|+++|+.   .    +++|||++|.+     .....++.|.||||++++||++.+||+||++||||+.+....+++.+
T Consensus        28 ~~v~~vv~~~~~~~~~~~~~vLL~~r~~~~~~g~~~~~~g~w~lPGG~ve~gEs~~~aa~REl~EEtGl~~~~~~~l~~~  107 (187)
T 3i9x_A           28 YTSDMILTTVKELNGKPTLHILLIKRSLTNAEGKPNMEGGKWAVPGGFVDENESAEQAAERELEEETSLTDIPLIPFGVF  107 (187)
T ss_dssp             EEEEEEEEEEEEETTEEEEEEEEEECCSBCTTSSBCTTTTCEECSEEECCTTSCHHHHHHHHHHHHHCCCSCCCEEEEEE
T ss_pred             ceEEEEEEEEcCCCCCCCCEEEEEEEccccccccCCCCCCEEECCceeCCCCCCHHHHHHHHHHHHHCCCCcceEEEEEE
Confidence            566666654   2    46899999953     11236799999999999999999999999999999999999999876


Q ss_pred             eeecccc--ceEEEEEEEEEecCCccccCCccccceEEEEeHhhHhcCCCcccchHHHHHHHHHHhhc
Q 039665          192 QSHRSFF--RKSDLFFVCMLRPRNFHIQKQDSEIAAAQWMQAEDYAAQPYVLKHQMFNYICQICLTKS  257 (275)
Q Consensus       192 ~~~~~~~--~~~~~~f~~~~~~~~~~~~~~~~E~~~~~Wv~~eel~~~~~~~~~~~~~~~~~~~~~~~  257 (275)
                      .......  .....+|++.............+|+.+++|++++++..+.+....   +.++..+++++
T Consensus       108 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~~~W~~~~el~~~~l~~~~---~~il~~a~~~l  172 (187)
T 3i9x_A          108 DKPGRDPRGWIISRAFYAIVPPEALEKRAAGDDAAEIGLFPMTEALELPLAFDH---LDMLKKAFSAI  172 (187)
T ss_dssp             CCTTSSTTSSEEEEEEEEECCHHHHHHHHHSTTTTTEEEEEHHHHTTSCBSTTH---HHHHHHHHHHH
T ss_pred             cCCccCCCCCEEEEEEEEEEcCcccCCcCCCCceeEEEEEeHHHcccCCCCccH---HHHHHHHHHHH
Confidence            5433221  123345555433221111234578889999999999987665543   34444444443

>1g0s_A Hypothetical 23.7 kDa protein in ICC-TOLC intergenic region; nudix fold, hydrolase; 1.90A {Escherichia coli} SCOP: d.113.1.1 PDB: 1g9q_A* 1ga7_A 1khz_A* 1viq_A

Probab=99.83  E-value=3.8e-20  Score=156.89  Aligned_cols=118  Identities=15%  Similarity=0.078  Sum_probs=90.2

Q ss_pred             eeEEEEEEEe-CCceEEEEEEecCCCC----CCCceeCcceeccCCCCHHHHHHHHHHHHhCCCcceeEEEEEEeeeccc
Q 039665          123 RVGVGAFVMN-NKRELLVVQENNGALK----GTGVWKLPTGTIEEGEDICAAAVREVKEETGIDTEFVEVLAFRQSHRSF  197 (275)
Q Consensus       123 ~v~v~~vv~~-~~~~vLLv~r~~~~~~----~~~~w~lPgG~ve~gEs~~~aA~REl~EEtGl~~~~~~~l~~~~~~~~~  197 (275)
                      ..+|++++++ .+++|||++|++.+..    +++.|+||||++|+||++.+||+||++||||+.+..+..++.+...++.
T Consensus        57 ~~av~vl~~~~~~~~vLLvrq~R~~~~~~~~~~~~welPgG~ve~gE~~~~aA~REl~EEtGl~~~~~~~l~~~~~~~g~  136 (209)
T 1g0s_A           57 GHAAVLLPFDPVRDEVVLIEQIRIAAYDTSETPWLLEMVAGMIEEGESVEDVARREAIEEAGLIVKRTKPVLSFLASPGG  136 (209)
T ss_dssp             CCEEEEEEEETTTTEEEEEEEECGGGGGGSSCSEEEECEEEECCTTCCHHHHHHHHHHHHHCCCCCCEEEEEEEESCTTT
T ss_pred             CCEEEEEEEECCCCEEEEEEeecccCCCCCCCCeEEEeCcccCCCCcCHHHHHHHHHHHHcCcccCcEEEeEEEecCCCc
Confidence            3468888898 5789999998865432    2578999999999999999999999999999999989888877666665


Q ss_pred             cceEEEEEEEEEecC--Cc-cccCCccccceEEEEeHhhHhcCCCc
Q 039665          198 FRKSDLFFVCMLRPR--NF-HIQKQDSEIAAAQWMQAEDYAAQPYV  240 (275)
Q Consensus       198 ~~~~~~~f~~~~~~~--~~-~~~~~~~E~~~~~Wv~~eel~~~~~~  240 (275)
                      .+...++|+|.....  .. ....+++|..++.|++++++.++...
T Consensus       137 ~~~~~~~f~a~~~~~~~~~~~~~~~e~E~~~~~w~~~~el~~~i~~  182 (209)
T 1g0s_A          137 TSERSSIMVGEVDATTASGIHGLADENEDIRVHVVSREQAYQWVEE  182 (209)
T ss_dssp             BCCEEEEEEEECCGGGCC--------CCSCEEEEEEHHHHHHHHHT
T ss_pred             cCcEEEEEEEEEccccccCCCCCCCCCcEEEEEEEEHHHHHHHHHc
Confidence            566778888865321  11 12346678899999999999887444

>3cng_A Nudix hydrolase; structural genomics, APC7497, PSI-2, protei structure initiative; 2.00A {Nitrosomonas europaea atcc 19718}

Probab=99.83  E-value=1.2e-19  Score=151.21  Aligned_cols=113  Identities=19%  Similarity=0.298  Sum_probs=87.4

Q ss_pred             cceeEEEEEEEeCCceEEEEEEecCCCCCCCceeCcceeccCCCCHHHHHHHHHHHHhCCCcceeEEEEEEeeeccccce
Q 039665          121 SHRVGVGAFVMNNKRELLVVQENNGALKGTGVWKLPTGTIEEGEDICAAAVREVKEETGIDTEFVEVLAFRQSHRSFFRK  200 (275)
Q Consensus       121 ~~~v~v~~vv~~~~~~vLLv~r~~~~~~~~~~w~lPgG~ve~gEs~~~aA~REl~EEtGl~~~~~~~l~~~~~~~~~~~~  200 (275)
                      .++++|++++++ +++|||++|.+.+  ..+.|+||||++++||++.+||+||++||||+.+....++++...  .....
T Consensus        38 ~~~~~v~~ii~~-~~~vLL~~r~~~~--~~g~w~lPgG~ve~gEs~~~aa~REl~EEtGl~~~~~~~~~~~~~--~~~~~  112 (189)
T 3cng_A           38 NPKVIVGCIPEW-ENKVLLCKRAIAP--YRGKWTLPAGFMENNETLVQGAARETLEEANARVEIRELYAVYSL--PHISQ  112 (189)
T ss_dssp             CCEEEEEEEEEE-TTEEEEEEESSSS--STTCEECSEEECCTTCCHHHHHHHHHHHHHCCCEEEEEEEEEEEE--GGGTE
T ss_pred             CCceEEEEEEEe-CCEEEEEEccCCC--CCCeEECceeeccCCCCHHHHHHHHHHHHHCCccccceeEEEEec--CCCcE
Confidence            456678888888 7899999998654  368999999999999999999999999999999987777766433  22356


Q ss_pred             EEEEEEEEEecCCccccCCccccceEEEEeHhhHh--cCCCcc
Q 039665          201 SDLFFVCMLRPRNFHIQKQDSEIAAAQWMQAEDYA--AQPYVL  241 (275)
Q Consensus       201 ~~~~f~~~~~~~~~~~~~~~~E~~~~~Wv~~eel~--~~~~~~  241 (275)
                      ..++|++....  ..+. .++|+.+++|++++++.  .+.++.
T Consensus       113 ~~~~f~~~~~~--~~~~-~~~E~~~~~W~~~~el~~~~l~~~~  152 (189)
T 3cng_A          113 VYMLFRAKLLD--LDFF-PGIESLEVRLFGEQEIPWNDIAFRV  152 (189)
T ss_dssp             EEEEEEEEECC--SCCC-CCTTEEEEEEECTTTCCGGGBSCHH
T ss_pred             EEEEEEEEeCC--CccC-CCccceeEEEECHHHcCcccccChH
Confidence            66777776543  2332 36788999999999998  454443

>3f6a_A Hydrolase, nudix family; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.02A {Clostridium perfringens atcc 13124}

Probab=99.83  E-value=1e-19  Score=147.03  Aligned_cols=124  Identities=18%  Similarity=0.233  Sum_probs=89.4

Q ss_pred             eeEEEEEEEeCCceEEEEEEecCCCCCCCceeCcceeccCCCCHHHHHHHHHHHHhCCCcceeEEEEEEee---------
Q 039665          123 RVGVGAFVMNNKRELLVVQENNGALKGTGVWKLPTGTIEEGEDICAAAVREVKEETGIDTEFVEVLAFRQS---------  193 (275)
Q Consensus       123 ~v~v~~vv~~~~~~vLLv~r~~~~~~~~~~w~lPgG~ve~gEs~~~aA~REl~EEtGl~~~~~~~l~~~~~---------  193 (275)
                      .++|+++|++ +++|||++|++     .+.|.||||++++||++.+||+||++||||+.+.....++....         
T Consensus         6 ~~~v~~vi~~-~~~vLL~~r~~-----~g~w~lPgG~ve~gEs~~~aa~REl~EEtGl~~~~~~~~~~~~~~~~~~~~~~   79 (159)
T 3f6a_A            6 HFTVSVFIVC-KDKVLLHLHKK-----AKKMLPLGGHIEVNELPEEACIREAKEEAGLNVTLYNPIDINLKKSCDLSGEK   79 (159)
T ss_dssp             CEEEEEEEEE-TTEEEEEECSS-----SCCEECEEEECCTTCCHHHHHHHHHHHHHCCCCEECCCCCHHHHHHHHHTTCE
T ss_pred             eEEEEEEEEE-CCEEEEEEcCC-----CCeEECCccCccCCCCHHHHHHHHHHHHhCCCceecccccccccccccccccc
Confidence            4567788888 68999999873     57899999999999999999999999999999887766642100         


Q ss_pred             ------------eccccceEEEEEEEEEecCCccccCCccccceEEEEeHhhHhcCCCcccchHHHHHHHHHHhh
Q 039665          194 ------------HRSFFRKSDLFFVCMLRPRNFHIQKQDSEIAAAQWMQAEDYAAQPYVLKHQMFNYICQICLTK  256 (275)
Q Consensus       194 ------------~~~~~~~~~~~f~~~~~~~~~~~~~~~~E~~~~~Wv~~eel~~~~~~~~~~~~~~~~~~~~~~  256 (275)
                                  .........++|+|...  .+.+..+++|..+++|++++++.++++...  .+..+.+.+...
T Consensus        80 ~~~~p~~~~~~~~~~~~~~~~~~f~~~~~--~~~~~~~~~E~~~~~W~~~~el~~~~~~~~--~~~~l~~~~~~~  150 (159)
T 3f6a_A           80 LLINPIHTILGDVSPNHSHIDFVYYATTT--SFETSPEIGESKILKWYSKEDLKNAHNIQE--NILVMATEALDL  150 (159)
T ss_dssp             EECCCSEEEEECSSSSSCEEEEEEEEECS--CSCCCCCTTSCCCEEEECSSSSTTCSSSCH--HHHHHHHHHHHH
T ss_pred             cccCccccccccCCCCceEEEEEEEEEeC--CCCcCCCCCcccceEEeeHHHHhhCcCCCh--hHHHHHHHHHHH
Confidence                        00111233356666443  344555678999999999999999875433  355555555544

>2o1c_A DATP pyrophosphohydrolase; nudix NTP hydrolase NTP pyrophosphohydrolase MUTT dihydroneo triphosphate pyrophosphohydrolase folate biosynthesis; 1.80A {Escherichia coli} PDB: 2o5w_A

Probab=99.82  E-value=1.5e-19  Score=143.67  Aligned_cols=124  Identities=23%  Similarity=0.321  Sum_probs=89.6

Q ss_pred             eeEEEEEEEeCC-ceEEEEEEecCCCCCCCceeCcceeccCCCCHHHHHHHHHHHHhCCCccee--EEEEEEeee-----
Q 039665          123 RVGVGAFVMNNK-RELLVVQENNGALKGTGVWKLPTGTIEEGEDICAAAVREVKEETGIDTEFV--EVLAFRQSH-----  194 (275)
Q Consensus       123 ~v~v~~vv~~~~-~~vLLv~r~~~~~~~~~~w~lPgG~ve~gEs~~~aA~REl~EEtGl~~~~~--~~l~~~~~~-----  194 (275)
                      .++|++++++.+ +++||++|...    +|.|.||||++++||++.+||+||++||||+.+...  .+++.....     
T Consensus         9 ~~~v~~~i~~~~~~~vLl~~r~~~----~g~w~~PgG~ve~gE~~~~aa~RE~~EEtGl~~~~~~~~~~~~~~~~~~~~~   84 (150)
T 2o1c_A            9 PVSILVVIYAQDTKRVLMLQRRDD----PDFWQSVTGSVEEGETAPQAAMREVKEEVTIDVVAEQLTLIDCQRTVEFEIF   84 (150)
T ss_dssp             SEEEEEEEEETTTCEEEEEECSSS----TTCEESEEEECCTTCCHHHHHHHHHHHHHCCCHHHHTCCEEEEEEEEEEECC
T ss_pred             ceEEEEEEEeCCCCEEEEEEecCC----CCceECCccccCCCCCHHHHHHHHHHHHhCCCccccceeEEeeeceeeeeee
Confidence            467888999864 89999998742    579999999999999999999999999999998763  455433211     


Q ss_pred             ------c--cccceEEEEEEEEEecCCccccCCccccceEEEEeHhhHhcCCCcccchHHHHHHHHHHhh
Q 039665          195 ------R--SFFRKSDLFFVCMLRPRNFHIQKQDSEIAAAQWMQAEDYAAQPYVLKHQMFNYICQICLTK  256 (275)
Q Consensus       195 ------~--~~~~~~~~~f~~~~~~~~~~~~~~~~E~~~~~Wv~~eel~~~~~~~~~~~~~~~~~~~~~~  256 (275)
                            +  .......++|.|.....  .. ....|+.+++|++++++.++.+...   .+.+++.++++
T Consensus        85 ~~~~~~~~~~~~~~~~~~f~~~~~~~--~~-~~~~E~~~~~W~~~~el~~~~~~~~---~~~~l~~~~~~  148 (150)
T 2o1c_A           85 SHLRHRYAPGVTRNTESWFCLALPHE--RQ-IVFTEHLAYKWLDAPAAAALTKSWS---NRQAIEQFVIN  148 (150)
T ss_dssp             GGGGGGBCTTCCEEEEEEEEEEESSC--CC-CCCSSSSCEEEEEHHHHHHHCSCHH---HHHHHHHHTTC
T ss_pred             cccccccCCCCcceEEEEEEEEcCCC--CC-cChhHhhccEeecHHHHHhhhcCHH---HHHHHHHHHHh
Confidence                  0  11234556777765422  21 2347889999999999999876543   55666665544

>3q93_A 7,8-dihydro-8-oxoguanine triphosphatase; structural genomics, structural genomics consortium, SGC, NU MUTT-like, hydrolase, magnesium binding; 1.80A {Homo sapiens} PDB: 1iry_A 3zr0_A* 3zr1_A

Probab=99.82  E-value=1.9e-19  Score=148.41  Aligned_cols=126  Identities=19%  Similarity=0.211  Sum_probs=92.1

Q ss_pred             cceeEEEEEEEeCCceEEEEEEecCCCCCCCceeCcceeccCCCCHHHHHHHHHHHHhCCCcceeEEEEEEeeeccccc-
Q 039665          121 SHRVGVGAFVMNNKRELLVVQENNGALKGTGVWKLPTGTIEEGEDICAAAVREVKEETGIDTEFVEVLAFRQSHRSFFR-  199 (275)
Q Consensus       121 ~~~v~v~~vv~~~~~~vLLv~r~~~~~~~~~~w~lPgG~ve~gEs~~~aA~REl~EEtGl~~~~~~~l~~~~~~~~~~~-  199 (275)
                      .+++++ +++++.+++|||++|.+..  +.+.|.||||++++||++.+||+||++||||+.+.....++.......... 
T Consensus        23 ~~~~~~-~~vi~~~~~vLL~~r~~~~--~~g~W~lPgG~ve~gEs~~~aa~REl~EEtGl~~~~~~~l~~~~~~~~~~~~   99 (176)
T 3q93_A           23 ASRLYT-LVLVLQPQRVLLGMKKRGF--GAGRWNGFGGKVQEGETIEDGARRELQEESGLTVDALHKVGQIVFEFVGEPE   99 (176)
T ss_dssp             CEEEEE-EEEEECSSEEEEEEECSST--TTTSEECEEEECCTTSCHHHHHHHHHHHHHSCEESCCEEEEEEEEEETTCSC
T ss_pred             CCcEEE-EEEEEeCCEEEEEEEcCCC--CCCeEECceecCCCCCCHHHHHHHHHHHHHCCcceeeEEEEEEEEEcCCCCc
Confidence            455544 4556668899999987543  679999999999999999999999999999999998999888765554322 


Q ss_pred             -eEEEEEEEEEecCCccccCCccccceEEEEeHhhHhcCCCcccchHHHHHHHHHHhh
Q 039665          200 -KSDLFFVCMLRPRNFHIQKQDSEIAAAQWMQAEDYAAQPYVLKHQMFNYICQICLTK  256 (275)
Q Consensus       200 -~~~~~f~~~~~~~~~~~~~~~~E~~~~~Wv~~eel~~~~~~~~~~~~~~~~~~~~~~  256 (275)
                       ...++|+|...  .+.+  ...|..+++|++++++..+++...   .+.++..+++.
T Consensus       100 ~~~~~~f~~~~~--~~~~--~~~e~~~~~W~~~~el~~~~~~~~---~~~~l~~~~~~  150 (176)
T 3q93_A          100 LMDVHVFCTDSI--QGTP--VESDEMRPCWFQLDQIPFKDMWPD---DSYWFPLLLQK  150 (176)
T ss_dssp             EEEEEEEEESCE--ESCC--CCCSSEEEEEEETTCCCGGGBCTT---HHHHHHHHHTT
T ss_pred             EEEEEEEEEECC--CCCc--CCCcceeeEEeeHHHccccccCcc---hHHHHHHHHcC
Confidence             23455555322  2222  345667889999999998876655   35566666554

>2dsc_A ADP-sugar pyrophosphatase; nudix domain, ADPR, ADP-ribose pyrophosphatase, NUDT5, hydrolase; HET: APR; 2.00A {Homo sapiens} PDB: 2dsd_A* 3bm4_A* 2dsb_A 3aca_A* 3ac9_A* 3l85_A*

Probab=99.81  E-value=5.1e-20  Score=156.30  Aligned_cols=104  Identities=19%  Similarity=0.232  Sum_probs=81.8

Q ss_pred             ceEEEEEEecCCCCCCCceeCcceeccCCCCHHHHHHHHHHHHhCCCcceeEEEEEEeeeccccceEEEEEEEEEecCCc
Q 039665          135 RELLVVQENNGALKGTGVWKLPTGTIEEGEDICAAAVREVKEETGIDTEFVEVLAFRQSHRSFFRKSDLFFVCMLRPRNF  214 (275)
Q Consensus       135 ~~vLLv~r~~~~~~~~~~w~lPgG~ve~gEs~~~aA~REl~EEtGl~~~~~~~l~~~~~~~~~~~~~~~~f~~~~~~~~~  214 (275)
                      ++|||++|++.+. .++.|+||||++|+||++.+||+||++||||+.+....+++.....+...+...++|++.+.....
T Consensus        77 ~~vlLv~q~R~~~-~~~~welPgG~ve~gEs~~~aA~REl~EEtGl~~~~~~~l~~~~~~~~~~~~~~~~~~a~~~~~~~  155 (212)
T 2dsc_A           77 ECIVLVKQFRPPM-GGYCIEFPAGLIDDGETPEAAALRELEEETGYKGDIAECSPAVCMDPGLSNCTIHIVTVTINGDDA  155 (212)
T ss_dssp             CEEEEEEEEEGGG-TEEEEECCEEECCTTCCHHHHHHHHHHHHHCCCCEEEEECCCEESCTTTBCCEEEEEEEEEETTSG
T ss_pred             cEEEEEEeecCCC-CCcEEECCccccCCCCCHHHHHHHHHHHHhCCCccceEEeccEEcCCCccCceEEEEEEEEeCccc
Confidence            5899999876542 467899999999999999999999999999999988877765555555555667778776543221


Q ss_pred             -----cccCCccccceEEEEeHhhHhcCCC
Q 039665          215 -----HIQKQDSEIAAAQWMQAEDYAAQPY  239 (275)
Q Consensus       215 -----~~~~~~~E~~~~~Wv~~eel~~~~~  239 (275)
                           ....+++|..++.|++++++.++..
T Consensus       156 ~~~~~~~~~~~~E~~~~~w~~~~el~~~~~  185 (212)
T 2dsc_A          156 ENARPKPKPGDGEFVEVISLPKNDLLQRLD  185 (212)
T ss_dssp             GGSSCCCCCCTTCCCEEEEEEGGGHHHHHH
T ss_pred             cccCCCCCCCCCceEEEEEEEHHHHHHHHH
Confidence                 3345678999999999999988654

>1vk6_A NADH pyrophosphatase; 1790429, structural genomics, JCSG, PS protein structure initiative, joint center for structural G hydrolase; HET: MSE; 2.20A {Escherichia coli} SCOP: d.113.1.4 d.113.1.4 g.41.14.1 PDB: 2gb5_A

Probab=99.81  E-value=3.6e-19  Score=156.33  Aligned_cols=130  Identities=18%  Similarity=0.216  Sum_probs=98.9

Q ss_pred             cceeEEEEEEEeCCceEEEEEEecCCCCCCCceeCcceeccCCCCHHHHHHHHHHHHhCCCcceeEEEEEEeeeccccce
Q 039665          121 SHRVGVGAFVMNNKRELLVVQENNGALKGTGVWKLPTGTIEEGEDICAAAVREVKEETGIDTEFVEVLAFRQSHRSFFRK  200 (275)
Q Consensus       121 ~~~v~v~~vv~~~~~~vLLv~r~~~~~~~~~~w~lPgG~ve~gEs~~~aA~REl~EEtGl~~~~~~~l~~~~~~~~~~~~  200 (275)
                      +..++|.+ +++.+++|||+||.+.+   .|.|.||||++|+||++++||+||++||||+++..+.+++.....+.  +.
T Consensus       138 ~~~~~viv-~v~~~~~vLL~rr~~~~---~g~w~lPgG~vE~GEt~eeAa~REv~EEtGl~v~~~~~~~~~~~~~~--~~  211 (269)
T 1vk6_A          138 QIAPCIIV-AIRRDDSILLAQHTRHR---NGVHTVLAGFVEVGETLEQAVAREVMEESGIKVKNLRYVTSQPWPFP--QS  211 (269)
T ss_dssp             CCEEEEEE-EEEETTEEEEEEETTTC---SSCCBCEEEECCTTCCHHHHHHHHHHHHHCCEEEEEEEEEEEEEETT--EE
T ss_pred             CCCcEEEE-EEEeCCEEEEEEecCCC---CCcEECCcCcCCCCCCHHHHHHHHHHHHhCceeeeEEEEEEEecCCC--CE
Confidence            34444544 44456899999998643   58999999999999999999999999999999998888887654433  34


Q ss_pred             EEEEEEEEEecCCccccCCccccceEEEEeHhhHhcCCCcccchHHHHHHHHHHhhccCc
Q 039665          201 SDLFFVCMLRPRNFHIQKQDSEIAAAQWMQAEDYAAQPYVLKHQMFNYICQICLTKSEKE  260 (275)
Q Consensus       201 ~~~~f~~~~~~~~~~~~~~~~E~~~~~Wv~~eel~~~~~~~~~~~~~~~~~~~~~~~~~~  260 (275)
                      ..++|++....  .++..+++|+.+++|++++|+..++...  .+.+.+++.+++.+++.
T Consensus       212 ~~~~f~a~~~~--~~~~~~~~E~~~~~W~~~~el~~l~~~~--si~~~li~~~l~~~r~~  267 (269)
T 1vk6_A          212 LMTAFMAEYDS--GDIVIDPKELLEANWYRYDDLPLLPPPG--TVARRLIEDTVAMCRAE  267 (269)
T ss_dssp             EEEEEEEEEEE--CCCCCCTTTEEEEEEEETTSCCSCCCTT--SHHHHHHHHHHHHHHHC
T ss_pred             EEEEEEEEECC--CCcCCCCcceEEEEEEEHHHhhhcccCc--HHHHHHHHHHHHHHHhh
Confidence            56677776543  3455667899999999999999886644  36777777777666543

>3fcm_A Hydrolase, nudix family; protein structure initiative II(PSI II), NYSGXRC, 11180J, structural genomics; 2.20A {Clostridium perfringens atcc 13124}

Probab=99.81  E-value=4.4e-19  Score=148.67  Aligned_cols=131  Identities=17%  Similarity=0.252  Sum_probs=83.2

Q ss_pred             eeEEEEEEEeCCc-eEEEEEEecCCCCCCCceeCcceeccCCCCHHHHHHHHHHHHhCCC-ccee----EEEEEEeeecc
Q 039665          123 RVGVGAFVMNNKR-ELLVVQENNGALKGTGVWKLPTGTIEEGEDICAAAVREVKEETGID-TEFV----EVLAFRQSHRS  196 (275)
Q Consensus       123 ~v~v~~vv~~~~~-~vLLv~r~~~~~~~~~~w~lPgG~ve~gEs~~~aA~REl~EEtGl~-~~~~----~~l~~~~~~~~  196 (275)
                      .++++++|++.++ +|||++++     ..+.|.||||++|+||++.+||+||++||||+. +...    ..+........
T Consensus        45 h~~~~~vv~~~~~~~vLL~~r~-----~~g~w~lPgG~ve~gEs~~eaa~REl~EEtGl~~~~~~~~~~~~~~~~~~~~~  119 (197)
T 3fcm_A           45 HLTSSAFAVNKERNKFLMIHHN-----IYNSWAWTGGHSDNEKDQLKVAIKELKEETGVKNPTPLLDKAFALDVLTVNGH  119 (197)
T ss_dssp             EEEEEEEEECTTSCEEEEEEET-----TTTEEECEEEECTTCCBHHHHHHHHHHHHHCCSSCEESCSSCSEEEEEEECCE
T ss_pred             cEEEEEEEEECCCCEEEEEEec-----CCCCEECCccccCCCCCHHHHHHHHHHHHHCCCcccccCCCceEEEEeeecCc
Confidence            4567788888765 99999987     357999999999999999999999999999998 4421    11221111100


Q ss_pred             --------ccceEEEEEEEEEecCCccccCCccccceEEEEeHhhHhcCCCcccchHHHHHHHHHHhhccCccC
Q 039665          197 --------FFRKSDLFFVCMLRPRNFHIQKQDSEIAAAQWMQAEDYAAQPYVLKHQMFNYICQICLTKSEKEYA  262 (275)
Q Consensus       197 --------~~~~~~~~f~~~~~~~~~~~~~~~~E~~~~~Wv~~eel~~~~~~~~~~~~~~~~~~~~~~~~~~~~  262 (275)
                              ......++|++.... ...+..+++|+.+++|++++++.++.....   +..+++.+++++++.+.
T Consensus       120 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~E~~~~~W~~~~el~~~~~~~~---~~~il~~~~~~l~~~~~  189 (197)
T 3fcm_A          120 IKRGKYVSSHLHLNLTYLIECSE-DETLMLKEDENSGVMWIPFNEISKYCSEPH---MIPIYEKLINKLKTQSK  189 (197)
T ss_dssp             EETTEEECCEEEEEEEEEEECCT-TSCCCCCC----CEEEEEGGGHHHHCCCGG---GHHHHHHHHHHHHC---
T ss_pred             cccCcccCCceeEEEEEEEEeCC-CcccCCCcccccceEEccHHHHHhhcCCHH---HHHHHHHHHHHHHhccc
Confidence                    001122445554332 234455678999999999999998866544   33466666666655443

>3gz5_A MUTT/nudix family protein; DNA binding protein, nudix domain, WHTH domain; 2.20A {Shewanella oneidensis} PDB: 3gz6_A* 3gz8_A*

Probab=99.81  E-value=1.3e-19  Score=156.81  Aligned_cols=134  Identities=20%  Similarity=0.331  Sum_probs=95.2

Q ss_pred             cceeEEEEEEE---eCCceEEEEEEecCCCCCCCceeCcceeccC--CCCHHHHHHHHHHHHhCCCcceeEEEEEEeeec
Q 039665          121 SHRVGVGAFVM---NNKRELLVVQENNGALKGTGVWKLPTGTIEE--GEDICAAAVREVKEETGIDTEFVEVLAFRQSHR  195 (275)
Q Consensus       121 ~~~v~v~~vv~---~~~~~vLLv~r~~~~~~~~~~w~lPgG~ve~--gEs~~~aA~REl~EEtGl~~~~~~~l~~~~~~~  195 (275)
                      .+.++|+++|+   +++++|||++|.+.+  ..|.|.||||++++  ||++.+||+||++||||+.+..++.++.+....
T Consensus        20 ~p~v~v~~vi~~~~~~~~~vLLv~R~~~~--~~g~W~lPGG~ve~~~gEs~~~AA~REl~EEtGl~~~~~~~l~~~~~~~   97 (240)
T 3gz5_A           20 AQLLTVDAVLFTYHDQQLKVLLVQRSNHP--FLGLWGLPGGFIDETCDESLEQTVLRKLAEKTAVVPPYIEQLCTVGNNS   97 (240)
T ss_dssp             -CEEEEEEEEEEEETTEEEEEEEECCSSS--STTCEECSEEECCTTTCSBHHHHHHHHHHHHHSSCCSEEEEEEEEEESS
T ss_pred             CCccEEEEEEEEEeCCCcEEEEEECcCCC--CCCCEECCccccCCCCCcCHHHHHHHHHHHHHCCCCCceeeEEEeCCCc
Confidence            45677888887   345699999998543  57899999999999  999999999999999999999888888776543


Q ss_pred             cc--cceEEEEEEEEEecCCccccCCccccceEEEEeHhhHhcCCCcccc-hHHHHHHHHHHhhcc
Q 039665          196 SF--FRKSDLFFVCMLRPRNFHIQKQDSEIAAAQWMQAEDYAAQPYVLKH-QMFNYICQICLTKSE  258 (275)
Q Consensus       196 ~~--~~~~~~~f~~~~~~~~~~~~~~~~E~~~~~Wv~~eel~~~~~~~~~-~~~~~~~~~~~~~~~  258 (275)
                      ..  .....++|+|.+..  .......+|+.++.|++++++...++...+ .++...++.+.+++.
T Consensus        98 r~~~~~~~~~~y~a~~~~--~~~~~~~~e~~~~~W~~~~el~~~~l~~dh~~il~~a~~rlr~kl~  161 (240)
T 3gz5_A           98 RDARGWSVTVCYTALMSY--QACQIQIASVSDVKWWPLADVLQMPLAFDHLQLIEQARERLTQKAL  161 (240)
T ss_dssp             SSTTSCEEEEEEEEECCH--HHHHHHHTTCTTEEEEEHHHHTTSCCSTTHHHHHHHHHHHHHHHHH
T ss_pred             cCCCceEEEEEEEEEecc--cccCCCCCcccceEEecHHHcccCCcchhHHHHHHHHHHHHHHhcc
Confidence            22  22344556664432  222224578889999999999865554443 255555555544443

>1q27_A Putative nudix hydrolase DR0079; radiation resistance; NMR {Deinococcus radiodurans} SCOP: d.113.1.2 PDB: 2o5f_A

Probab=99.81  E-value=2.1e-19  Score=146.82  Aligned_cols=112  Identities=17%  Similarity=0.202  Sum_probs=84.8

Q ss_pred             eeEEEEEEEeCCceEEEEEEecCCCCCCCcee-CcceeccCCCCHHHHHHHHHHHHhCCCccee--EEEEEEeeeccccc
Q 039665          123 RVGVGAFVMNNKRELLVVQENNGALKGTGVWK-LPTGTIEEGEDICAAAVREVKEETGIDTEFV--EVLAFRQSHRSFFR  199 (275)
Q Consensus       123 ~v~v~~vv~~~~~~vLLv~r~~~~~~~~~~w~-lPgG~ve~gEs~~~aA~REl~EEtGl~~~~~--~~l~~~~~~~~~~~  199 (275)
                      ..++++++++.+++|||++|...+..++|.|+ ||||++++||++.+||+||++||||+.+...  ..++.+..+.....
T Consensus        34 ~~~v~v~i~~~~~~vLl~~r~~~~~~~~g~w~~~PgG~ve~gEs~~~aa~REl~EEtGl~~~~~~l~~~~~~~~~~~~~~  113 (171)
T 1q27_A           34 VRVVNAFLRNSQGQLWIPRRSPSKSLFPNALDVSVGGAVQSGETYEEAFRREAREELNVEIDALSWRPLASFSPFQTTLS  113 (171)
T ss_dssp             CEEEEEEEEETTTEEEECCSCCSSSCCCCSCCCSEEEECSSSSCHHHHHHHHHHHHHSCTTSSSCEEEEEEECSSSSCCS
T ss_pred             ceEEEEEEECCCCeEEEEEecCCCCCCCCccccccCccccCCCCHHHHHHHHHHHHHCCcccccceEEEEEEeccCCCCc
Confidence            44677888998899999998655444579999 9999999999999999999999999998774  45554441222222


Q ss_pred             eEEEEEEEEEecCCccccCCccccceEEEEeHhhHhcC
Q 039665          200 KSDLFFVCMLRPRNFHIQKQDSEIAAAQWMQAEDYAAQ  237 (275)
Q Consensus       200 ~~~~~f~~~~~~~~~~~~~~~~E~~~~~Wv~~eel~~~  237 (275)
                      ...++|.|..   ...+..++.|+.+++|++++++.++
T Consensus       114 ~~~~~f~~~~---~~~~~~~~~E~~~~~W~~~~el~~~  148 (171)
T 1q27_A          114 SFMCVYELRS---DATPIFNPNDISGGEWLTPEHLLAR  148 (171)
T ss_dssp             SEEEEEEEEC---CCCCCSCTTTCSCCEEECHHHHHHH
T ss_pred             cEEEEEEEEE---CCccccCchhhheEEEecHHHHHHH
Confidence            3556666654   3445556788999999999999854

>2azw_A MUTT/nudix family protein; MUTT/nudix ,enterococcus faecalis, structural genomics, PSI, structure initiative; HET: 1PE; 1.90A {Enterococcus faecalis} SCOP: d.113.1.1

Probab=99.81  E-value=3.3e-19  Score=141.68  Aligned_cols=122  Identities=21%  Similarity=0.234  Sum_probs=87.7

Q ss_pred             cceeEEEEEEEeC-CceEEEEEEecCCCCCCCceeCcceeccCCCCHHHHHHHHHHHHhCCCcceeEEEEEEeee-c--c
Q 039665          121 SHRVGVGAFVMNN-KRELLVVQENNGALKGTGVWKLPTGTIEEGEDICAAAVREVKEETGIDTEFVEVLAFRQSH-R--S  196 (275)
Q Consensus       121 ~~~v~v~~vv~~~-~~~vLLv~r~~~~~~~~~~w~lPgG~ve~gEs~~~aA~REl~EEtGl~~~~~~~l~~~~~~-~--~  196 (275)
                      ..+.+++++|+++ +++|||++|.      .+.|.||||++++||++.+||+||++||||+.+.....++..... .  .
T Consensus        16 ~~~~~~~~vi~~~~~~~vLl~~r~------~g~w~~PgG~ve~gE~~~~aa~RE~~EEtGl~~~~~~~~~~~~~~~~~~~   89 (148)
T 2azw_A           16 QTRYAAYIIVSKPENNTMVLVQAP------NGAYFLPGGEIEGTETKEEAIHREVLEELGISVEIGCYLGEADEYFYSNH   89 (148)
T ss_dssp             EECCEEEEECEEGGGTEEEEEECT------TSCEECSEEECCTTCCHHHHHHHHHHHHHSEEEEEEEEEEEEEEEEEETT
T ss_pred             eeeeEEEEEEECCCCCeEEEEEcC------CCCEeCCCcccCCCCCHHHHHHHHHHHHhCCeeEeeeEEEEEEEEEcCCC
Confidence            4456788888886 7899999963      278999999999999999999999999999999888887764311 1  1


Q ss_pred             ---ccceEEEEEEEEEecCCccccCCccccceEEEEeHhhHhcCCCcccchHHHHHHHHHH
Q 039665          197 ---FFRKSDLFFVCMLRPRNFHIQKQDSEIAAAQWMQAEDYAAQPYVLKHQMFNYICQICL  254 (275)
Q Consensus       197 ---~~~~~~~~f~~~~~~~~~~~~~~~~E~~~~~Wv~~eel~~~~~~~~~~~~~~~~~~~~  254 (275)
                         ......++|.|.....  .. ...+|..+++|++++++.++.....   .+.+++.++
T Consensus        90 ~~~~~~~~~~~~~~~~~~~--~~-~~~~e~~~~~W~~~~el~~~~~~~~---~~~~l~~~~  144 (148)
T 2azw_A           90 RQTAYYNPGYFYVANTWRQ--LS-EPLERTNTLHWVAPEEAVRLLKRGS---HRWAVEKWL  144 (148)
T ss_dssp             TTEEEEEEEEEEEEEEEEE--CS-SCC-CCSEEEEECHHHHHHHBSCHH---HHHHHHHHH
T ss_pred             CCcceEEEEEEEEEEcCcC--Cc-CCCCceeeEEEeeHHHHHhhhcchh---HHHHHHHHH
Confidence               1223455666654322  22 2346778999999999998766443   445555544

>2pqv_A MUTT/nudix family protein; structu genomics, PSI-2, protein structure initiative, midwest CENT structural genomics, MCSG; 1.63A {Streptococcus pneumoniae}

Probab=99.81  E-value=1.6e-19  Score=144.99  Aligned_cols=119  Identities=18%  Similarity=0.268  Sum_probs=85.8

Q ss_pred             eeEEEEEEEeCCceEEEEEEecCCCCCCCceeCcceeccCCCCHHHHHHHHHHHHhCCCcceeEEEEEEeeeccccc---
Q 039665          123 RVGVGAFVMNNKRELLVVQENNGALKGTGVWKLPTGTIEEGEDICAAAVREVKEETGIDTEFVEVLAFRQSHRSFFR---  199 (275)
Q Consensus       123 ~v~v~~vv~~~~~~vLLv~r~~~~~~~~~~w~lPgG~ve~gEs~~~aA~REl~EEtGl~~~~~~~l~~~~~~~~~~~---  199 (275)
                      +++++++|++ +++|||++|       ++.|.||||++++||++.+||+||++||||+.+....+++.........+   
T Consensus        19 ~~~~~~ii~~-~~~vLl~~r-------~~~w~lPgG~ve~gE~~~~aa~REl~EEtGl~~~~~~~~~~~~~~~~~~~~~~   90 (154)
T 2pqv_A           19 GVRATALIVQ-NHKLLVTKD-------KGKYYTIGGAIQVNESTEDAVVREVKEELGVKAQAGQLAFVVENRFEVDGVSY   90 (154)
T ss_dssp             EEEEEECCEE-TTEEEEEEE-------TTEEECEEEECBTTCCHHHHHHHHHHHHHCCCEEEEEEEEEEEEEEEETTEEE
T ss_pred             eEEEEEEEEE-CCEEEEEec-------CCeEECcccCcCCCCCHHHHHHHHHHHHhCCeeeeceEEEEEeeeecCCCCcc
Confidence            4567777777 689999998       36899999999999999999999999999999988887776543332222   


Q ss_pred             -eEEEEEEEEEecCCccccCCccccceEEEEeHhhHhcCCCcccchHHHHHHH
Q 039665          200 -KSDLFFVCMLRPRNFHIQKQDSEIAAAQWMQAEDYAAQPYVLKHQMFNYICQ  251 (275)
Q Consensus       200 -~~~~~f~~~~~~~~~~~~~~~~E~~~~~Wv~~eel~~~~~~~~~~~~~~~~~  251 (275)
                       ...++|+|...........+++|..+++|++++++.++++...  ..+.++.
T Consensus        91 ~~~~~~f~~~~~~~~~~~~~~~~e~~~~~W~~~~el~~~~~~~~--~~~~~l~  141 (154)
T 2pqv_A           91 HNIEFHYLVDLLEDAPLTMQEDEKRQPCEWIDLDKLQNIQLVPV--FLKTALP  141 (154)
T ss_dssp             EEEEEEEEEEESSCCCSEEEETTEEEEEEEEEGGGGGGSCEEST--THHHHTT
T ss_pred             eEEEEEEEEEecCCCCcccCCCCceeeEEEeEHHHHhhcCcCcH--HHHHHhh
Confidence             2334666655332211112356788999999999999876554  3444443

>3o8s_A Nudix hydrolase, ADP-ribose pyrophosphatase; structural genomics, joint center for structural genomics, J protein structure initiative; 2.27A {Streptococcus suis}

Probab=99.81  E-value=2.4e-19  Score=151.56  Aligned_cols=128  Identities=27%  Similarity=0.450  Sum_probs=95.0

Q ss_pred             CCcceeEEEEEEEeCCceEEEEEEecCCCCCCCceeCcceeccCCCCHHHHHHHHHHHHhCCCcceeEEEEEEeeecc--
Q 039665          119 NASHRVGVGAFVMNNKRELLVVQENNGALKGTGVWKLPTGTIEEGEDICAAAVREVKEETGIDTEFVEVLAFRQSHRS--  196 (275)
Q Consensus       119 ~~~~~v~v~~vv~~~~~~vLLv~r~~~~~~~~~~w~lPgG~ve~gEs~~~aA~REl~EEtGl~~~~~~~l~~~~~~~~--  196 (275)
                      +.+++++|+++|+++ ++|||++|.      .+.|.||||++++||++.+||+||++||||+.+....+++.......  
T Consensus        66 y~~~~~~v~~vv~~~-~~vLLvrr~------~g~w~lPgG~ve~gEs~~~aa~REl~EEtGl~~~~~~~l~~~~~~~~~~  138 (206)
T 3o8s_A           66 YQTPKLDTRAAIFQE-DKILLVQEN------DGLWSLPGGWCDVDQSVKDNVVKEVKEEAGLDVEAQRVVAILDKHKNNP  138 (206)
T ss_dssp             --CCEEEEEEEEEET-TEEEEEECT------TSCEECSEEECCTTSCHHHHHHHHHHHHHCEEEEEEEEEEEEEHHHHCC
T ss_pred             CCCCCccEEEEEEEC-CEEEEEEec------CCeEECCeeccCCCCCHHHHHHHHHHHHHCCcceeeeEEEEEeccccCC
Confidence            345677888888884 899999976      47899999999999999999999999999999998888887652211  


Q ss_pred             ---ccceEEEEEEEEEecCCccccCCccccceEEEEeHhhHhcCCCcccchHHHHHHHHHHhhccC
Q 039665          197 ---FFRKSDLFFVCMLRPRNFHIQKQDSEIAAAQWMQAEDYAAQPYVLKHQMFNYICQICLTKSEK  259 (275)
Q Consensus       197 ---~~~~~~~~f~~~~~~~~~~~~~~~~E~~~~~Wv~~eel~~~~~~~~~~~~~~~~~~~~~~~~~  259 (275)
                         ......++|.|....  +.+.. +.|..+++|++++++.++.....   ++..+..+++.++.
T Consensus       139 ~~~~~~~~~~~~~~~~~~--~~~~~-~~E~~~~~w~~~~el~~l~~~~~---~~~~l~~~~~~~~~  198 (206)
T 3o8s_A          139 AKSAHRVTKVFILCRLLG--GEFQP-NSETVASGFFSLDDLPPLYLGKN---TAEQLALCLEASRS  198 (206)
T ss_dssp             -----CEEEEEEEEEEEE--ECCCC-CSSCSEEEEECTTSCCCBCTTTC---CHHHHHHHHHHHHC
T ss_pred             CCCCceEEEEEEEEEecC--CeecC-CCCceEEEEEeHHHhhhccCCCc---hHHHHHHHHHHHHC
Confidence               233455677776543  23332 37899999999999999877554   44555555555443

>3q91_A Uridine diphosphate glucose pyrophosphatase; structural genomics, structural genomics consortium, SGC, NU MUTT-like, hydrolase, magnesium binding; 2.70A {Homo sapiens}

Probab=99.81  E-value=8.3e-20  Score=155.78  Aligned_cols=118  Identities=17%  Similarity=0.141  Sum_probs=87.6

Q ss_pred             ceeEEEEEEEe-CCceEEEEEEecCCCC------------------------------CCCceeCcceeccC-CCCHHHH
Q 039665          122 HRVGVGAFVMN-NKRELLVVQENNGALK------------------------------GTGVWKLPTGTIEE-GEDICAA  169 (275)
Q Consensus       122 ~~v~v~~vv~~-~~~~vLLv~r~~~~~~------------------------------~~~~w~lPgG~ve~-gEs~~~a  169 (275)
                      +..+|++++++ .++++||++|+|.+..                              .++.|+||||++|+ ||++.+|
T Consensus        35 ~~~aV~vl~~~~~~~~vlLvrQ~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~welPgG~ve~~gEs~~ea  114 (218)
T 3q91_A           35 THDSVTVLLFNSSRRSLVLVKQFRPAVYAGEVERRFPGSLAAVDQDGPRELQPALPGSAGVTVELCAGLVDQPGLSLEEV  114 (218)
T ss_dssp             CCCEEEEEEEEGGGTEEEEEEEECHHHHHHHTC-------------------------CCEEEECEEEECCSSSCCHHHH
T ss_pred             cCCeEEEEEEECCCCEEEEEEccccccccccccccccccccccccccccccccccccCCCeEEECCcceeCCCCCCHHHH
Confidence            34578889998 4689999999864321                              15799999999999 9999999


Q ss_pred             HHHHHHHHhCCCc--ceeEEEEEEeeeccccceEEEEEEEEEecC----CccccCCccccceEEEEeHhhHhcCCC
Q 039665          170 AVREVKEETGIDT--EFVEVLAFRQSHRSFFRKSDLFFVCMLRPR----NFHIQKQDSEIAAAQWMQAEDYAAQPY  239 (275)
Q Consensus       170 A~REl~EEtGl~~--~~~~~l~~~~~~~~~~~~~~~~f~~~~~~~----~~~~~~~~~E~~~~~Wv~~eel~~~~~  239 (275)
                      |+||++||||+.+  ..+..++.+.......+...++|+|.....    .+....+++|..++.|++++++.++..
T Consensus       115 A~REl~EEtGl~~~~~~l~~l~~~~~~~g~~~~~~~~f~a~~~~~~~~~~~~~~~d~~E~~ev~wv~l~el~~~i~  190 (218)
T 3q91_A          115 ACKEAWEECGYHLAPSDLRRVATYWSGVGLTGSRQTMFYTEVTDAQRSGPGGGLVEEGELIEVVHLPLEGAQAFAD  190 (218)
T ss_dssp             HHHHHHHHHCBCCCGGGCEEEEEEEEC---CCEEEEEEEEEECGGGBCC---------CCEEEEEEEGGGHHHHHH
T ss_pred             HHHHHHHHhCCccccCceEEEEEEecCCCccceEEEEEEEEECCcccccCCCCCCCCCcEEEEEEEEHHHHHHHHH
Confidence            9999999999998  788888877766666677778888876432    123445678999999999999988643

>1x51_A A/G-specific adenine DNA glycosylase; nudix domain, DNA repair, alpha-3 isoform, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.113.1.3

Probab=99.80  E-value=4.1e-19  Score=142.87  Aligned_cols=127  Identities=15%  Similarity=0.247  Sum_probs=92.7

Q ss_pred             ceeEEEEEEEeC---CceEEEEEEecCCCCCCCceeCcceeccCCCCHH-HHHHHHHHHHhC-CCcceeEEEEEEeeecc
Q 039665          122 HRVGVGAFVMNN---KRELLVVQENNGALKGTGVWKLPTGTIEEGEDIC-AAAVREVKEETG-IDTEFVEVLAFRQSHRS  196 (275)
Q Consensus       122 ~~v~v~~vv~~~---~~~vLLv~r~~~~~~~~~~w~lPgG~ve~gEs~~-~aA~REl~EEtG-l~~~~~~~l~~~~~~~~  196 (275)
                      ++..+.++|.+.   +++|||+||...+ .++|.|+||||.+++||++. +||+||++|||| +.+.....++.+.+.+.
T Consensus        18 ~~~~~~~vi~~~~~~~~~vLl~~R~~~~-~~~g~w~~PgG~~e~gE~~~~~a~~REl~EE~g~l~~~~~~~l~~~~~~~~   96 (155)
T 1x51_A           18 EESSATCVLEQPGALGAQILLVQRPNSG-LLAGLWEFPSVTWEPSEQLQRKALLQELQRWAGPLPATHLRHLGEVVHTFS   96 (155)
T ss_dssp             EEEEEEEEEEEECSSSEEEEEEECCCCS-TTCSCEECCEEECCSSHHHHHHHHHHHHHHHSCCCCSTTCEECCCBCCBCS
T ss_pred             eEEEEEEEEEecCCCCCEEEEEECCCCC-CCCceecCCccccCCCCCHHHHHHHHHHHHHhCCcceeeeeecceEEEecC
Confidence            455565666664   5899999987554 36799999999999999996 999999999999 88877777765555555


Q ss_pred             ccceEEEEEEEEEecCCccccCCccccceEEEEeHhhHhcCCCcccchHHHHHHHHHHhh
Q 039665          197 FFRKSDLFFVCMLRPRNFHIQKQDSEIAAAQWMQAEDYAAQPYVLKHQMFNYICQICLTK  256 (275)
Q Consensus       197 ~~~~~~~~f~~~~~~~~~~~~~~~~E~~~~~Wv~~eel~~~~~~~~~~~~~~~~~~~~~~  256 (275)
                      .+....++|.|...  ...+  ...|..++.|++++++.+++++..   ++.+++.+.+.
T Consensus        97 ~~~~~~~~~~~~~~--~~~~--~~~e~~~~~W~~~~el~~~~~~~~---~~~~l~~~~~~  149 (155)
T 1x51_A           97 HIKLTYQVYGLALE--GQTP--VTTVPPGARWLTQEEFHTAAVSTA---MKKVFRVYQGQ  149 (155)
T ss_dssp             SCEEEEEEEEEECS--SCCC--CCCCCTTEEEEEHHHHHHSCCCHH---HHHHHHHHHHT
T ss_pred             CccEEEEEEEEEEc--CCCC--CCCCCCccEEccHHHhhhcCCCHH---HHHHHHHHHhc
Confidence            54455566766543  2222  335667899999999999877543   55666666553

>1mut_A MUTT, nucleoside triphosphate pyrophosphohydrolase; DNA repair; NMR {Escherichia coli} SCOP: d.113.1.1 PDB: 1ppx_A* 1pun_A* 1puq_A* 1pus_A* 1tum_A* 3a6s_A* 3a6t_A* 3a6u_A* 3a6v_A*

Probab=99.80  E-value=2.5e-20  Score=144.70  Aligned_cols=110  Identities=20%  Similarity=0.259  Sum_probs=85.2

Q ss_pred             EEEEeCCceEEEEEEecCCCCCCCceeCcceeccCCCCHHHHHHHHHHHHhCCCcceeEEEEEEeeeccccceEEEEEEE
Q 039665          128 AFVMNNKRELLVVQENNGALKGTGVWKLPTGTIEEGEDICAAAVREVKEETGIDTEFVEVLAFRQSHRSFFRKSDLFFVC  207 (275)
Q Consensus       128 ~vv~~~~~~vLLv~r~~~~~~~~~~w~lPgG~ve~gEs~~~aA~REl~EEtGl~~~~~~~l~~~~~~~~~~~~~~~~f~~  207 (275)
                      +++++.+++|||+||.+.+ .++|.|+||||++++||++.+||+||++||||+.+.....++...+.........++|.|
T Consensus         9 ~ii~~~~~~vLl~~r~~~~-~~~g~w~~PgG~~e~gE~~~~aa~RE~~EE~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~   87 (129)
T 1mut_A            9 GIIRNENNEIFITRRAADA-HMANKLEFPGGKIEMGETPEQAVVRELQEEVGITPQHFSLFEKLEYEFPDRHITLWFWLV   87 (129)
T ss_dssp             EECEETTTEEEEEECSSCC-SSSCCEECCCCCSSSCSSTTHHHHHHHHTTTCCSSCEECCCCCCBCCCSSCEEECCCEEE
T ss_pred             EEEEecCCEEEEEEeCCCC-CCCCeEECCccCcCCCCCHHHHHHHHHHHHhCCccccceEEEEEEEecCCceEEEEEEEE
Confidence            4566888999999998654 367999999999999999999999999999999988777766555444443334456666


Q ss_pred             EEecCCccccCCccccceEEEEeHhhHhcCCCccc
Q 039665          208 MLRPRNFHIQKQDSEIAAAQWMQAEDYAAQPYVLK  242 (275)
Q Consensus       208 ~~~~~~~~~~~~~~E~~~~~Wv~~eel~~~~~~~~  242 (275)
                      ....  ..  +...|..++.|++++++.+++++..
T Consensus        88 ~~~~--~~--~~~~e~~~~~W~~~~el~~~~~~~~  118 (129)
T 1mut_A           88 ERWE--GE--PWGKEGQPGEWMSLVGLNADDFPPA  118 (129)
T ss_dssp             EECS--SC--CCCCSSCCCEEEESSSCCTTTSCTT
T ss_pred             EccC--Cc--cCCcccceeEEeCHHHcccccCCch
Confidence            5432  22  2456788999999999999887755

>3o6z_A GDP-mannose pyrophosphatase NUDK; nudix, hydrolase, biofilm; 2.05A {Escherichia coli} SCOP: d.113.1.1 PDB: 3o52_A* 1viu_A 3o69_A 3o61_A

Probab=99.80  E-value=1.7e-19  Score=150.69  Aligned_cols=115  Identities=13%  Similarity=0.070  Sum_probs=88.5

Q ss_pred             eEEEEEEEeC-CceEEEEEEecCCC----C-CCCceeCcceeccCCCCHHHHHHHHHHHHhCCCcceeEEEEEEeeeccc
Q 039665          124 VGVGAFVMNN-KRELLVVQENNGAL----K-GTGVWKLPTGTIEEGEDICAAAVREVKEETGIDTEFVEVLAFRQSHRSF  197 (275)
Q Consensus       124 v~v~~vv~~~-~~~vLLv~r~~~~~----~-~~~~w~lPgG~ve~gEs~~~aA~REl~EEtGl~~~~~~~l~~~~~~~~~  197 (275)
                      .+|++++++. ++++||+++++.+.    . +++.|+||||++| ||++.+||+||++||||+.+..+..++.+...+..
T Consensus        46 ~av~v~~~~~~~~~vlLv~~~r~~~~~~~~~~~~~w~lPgG~ve-gE~~~~aa~REl~EEtG~~~~~~~~l~~~~~~~~~  124 (191)
T 3o6z_A           46 NGATILLYNTKKKTVVLIRQFRVATWVNGNESGQLIESCAGLLD-NDEPEVCIRKEAIEETGYEVGEVRKLFELYMSPGG  124 (191)
T ss_dssp             CEEEEEEEETTTTEEEEEEEECHHHHTTTCTTCEEEECEEEECC-SSCHHHHHHHHHHHHC-CCCSCEEEEEEEESCTTT
T ss_pred             CEEEEEEEECCCCEEEEEEcCCccccccCCCCCeEEEecceEeC-CCCHHHHHHHHHHHHhCCccCcEEEEEEEEeCCCc
Confidence            4677888884 68999999986321    0 4678999999999 99999999999999999999989999887777766


Q ss_pred             cceEEEEEEEEEecCCc---cccCCccccceEEEEeHhhHhcCCCc
Q 039665          198 FRKSDLFFVCMLRPRNF---HIQKQDSEIAAAQWMQAEDYAAQPYV  240 (275)
Q Consensus       198 ~~~~~~~f~~~~~~~~~---~~~~~~~E~~~~~Wv~~eel~~~~~~  240 (275)
                      .+...++|++.......   ... .++|+.++.|++++++.++...
T Consensus       125 ~~~~~~~f~~~~~~~~~~~~~~~-~~~E~~~~~w~~~~el~~~~~~  169 (191)
T 3o6z_A          125 VTELIHFFIAEYSDNQRANAGGG-VEDEAIEVLELPFSQALEMIKT  169 (191)
T ss_dssp             BCCEEEEEEEECCTTCC---------CCSSEEEEEEHHHHHHHHHH
T ss_pred             cCcEEEEEEEEEcccccccCCCC-CCCcEEEEEEEEHHHHHHHHHc
Confidence            67777888886543211   112 2678999999999999987543

>2a6t_A SPAC19A8.12; alpha/beta/alpha, RNA binding protein,hydrolase; 2.50A {Schizosaccharomyces pombe} SCOP: a.242.1.1 d.113.1.7 PDB: 2qkm_B*

Probab=99.80  E-value=1.2e-20  Score=166.22  Aligned_cols=195  Identities=15%  Similarity=0.207  Sum_probs=114.4

Q ss_pred             cccceeecccCCcEEEeCCCCC--ChHHHHHHHHHHHHHHHHhCC-eeEEEEccccccccchHHHhcCc---eeccCCCC
Q 039665           28 PELLTAVGDLHGGVTVDMKKPM--DSKVFSSRLRASLSLWRQQGK-RGVWIKLPIELANLVEPAVQEGF---RYHHAEPD  101 (275)
Q Consensus        28 ~~~~~~~~d~~~g~~v~~~~~~--~~~~f~~~l~~~l~~w~~~~~-~~vW~~~~~~~~~l~~~~~~~gf---~~~~~~~~  101 (275)
                      .++...-.|-+...+++++...  +.+...-.+..  .+|--.+. +..+-++        |.....+|   .|||+.  
T Consensus        11 ~~~~~~l~dl~~rfi~n~p~~~~~~~~~~~f~ie~--a~wfy~d~~~~~~~~~--------p~~~~~~f~~~~f~~~~--   78 (271)
T 2a6t_A           11 ATFSQVLDDLSARFILNLPAEEQSSVERLCFQIEQ--AHWFYEDFIRAQNDQL--------PSLGLRVFSAKLFAHCP--   78 (271)
T ss_dssp             CCTHHHHHHHHHHHTTTSCGGGTTCHHHHHHHHHH--HHHHHHHTHHHHCSSS--------CCCCHHHHHHHHHTTCH--
T ss_pred             CCHHHHHHHHHHHHhhcCCHHHhccHHHHHHHHHH--HHHHHHHhhhhcccCC--------CcccHHHHHHHHhhhhh--
Confidence            3455556677777777765322  44433333333  35664432 1111111        22234556   788885  


Q ss_pred             eeeEEeecCCCcCCCCC---CCcceeEEEEEEEeC-CceEEEEEEecCCCCCCCceeCcceeccCCCCHHHHHHHHHHHH
Q 039665          102 YLMLVYWIPETADVLPA---NASHRVGVGAFVMNN-KRELLVVQENNGALKGTGVWKLPTGTIEEGEDICAAAVREVKEE  177 (275)
Q Consensus       102 ~~~l~~wl~~~~~~~p~---~~~~~v~v~~vv~~~-~~~vLLv~r~~~~~~~~~~w~lPgG~ve~gEs~~~aA~REl~EE  177 (275)
                        ++..|.+.....++.   +.++...+++++++. +++|||++|.+    .++.|+||||++|+||++.+||+||++||
T Consensus        79 --~l~~~~~~~~~~~~~~~~~~~~v~~v~avv~~~~~~~vLLv~r~~----~~g~W~lPgG~ve~gEs~~eAA~REl~EE  152 (271)
T 2a6t_A           79 --LLWKWSKVHEEAFDDFLRYKTRIPVRGAIMLDMSMQQCVLVKGWK----ASSGWGFPKGKIDKDESDVDCAIREVYEE  152 (271)
T ss_dssp             --HHHHC---CCHHHHHHHHHSCCCCEEEEEEBCSSSSEEEEEEESS----TTCCCBCSEEECCTTCCHHHHHHHHHHHH
T ss_pred             --hhhcccccchhHHHHHHhcCCCCCeEEEEEEECCCCEEEEEEEeC----CCCeEECCcccCCCCcCHHHHHHHHHHHH
Confidence              667777743322221   112234567888885 48999999975    34789999999999999999999999999


Q ss_pred             hCCCcceeEEEEEEeeeccccceEEEEEEEEEecCCccccC-CccccceEEEEeHhhHhcCCCcc
Q 039665          178 TGIDTEFVEVLAFRQSHRSFFRKSDLFFVCMLRPRNFHIQK-QDSEIAAAQWMQAEDYAAQPYVL  241 (275)
Q Consensus       178 tGl~~~~~~~l~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~-~~~E~~~~~Wv~~eel~~~~~~~  241 (275)
                      ||+++..+..+..+ ......+...++|++........... +++|+.+++|++++++.++....
T Consensus       153 tGl~~~~l~~~~~~-~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~E~~~~~W~~~~el~~~~~~~  216 (271)
T 2a6t_A          153 TGFDCSSRINPNEF-IDMTIRGQNVRLYIIPGISLDTRFESRTRKEISKIEWHNLMDLPTFKKNK  216 (271)
T ss_dssp             HCCCCTTTCCTTCE-EEEEETTEEEEEEEECCCCTTCCCC------EEEEEEEEGGGSTTCC---
T ss_pred             hCCCceeeeeeeee-ccCCcCCceEEEEEEEEecCcccCCCCCccceeEEEEEEHHHHHHHHhcC
Confidence            99998764322211 11122234556677755433332232 56799999999999999876543

>2b06_A MUTT/nudix family protein; structural genomics, P protein structure initiative, midwest center for structural genomics, MCSG; 1.40A {Streptococcus pneumoniae} SCOP: d.113.1.1

Probab=99.80  E-value=8.4e-19  Score=140.74  Aligned_cols=125  Identities=14%  Similarity=0.189  Sum_probs=88.3

Q ss_pred             ceeEEEEEEEeCCce----EEEEEEecCCCCCCCceeCcceeccCCCCHHHHHHHHHHHHhCCCcceeEEEEEEeeecc-
Q 039665          122 HRVGVGAFVMNNKRE----LLVVQENNGALKGTGVWKLPTGTIEEGEDICAAAVREVKEETGIDTEFVEVLAFRQSHRS-  196 (275)
Q Consensus       122 ~~v~v~~vv~~~~~~----vLLv~r~~~~~~~~~~w~lPgG~ve~gEs~~~aA~REl~EEtGl~~~~~~~l~~~~~~~~-  196 (275)
                      .+.+++++|.+ +++    |||++|...+  +++ |.||||++++||++.+||+||++||||+.+....+++....... 
T Consensus         7 ~~~~~~~ii~~-~~~~~~~vLl~~r~~~~--~~g-w~lPgG~ve~gE~~~~aa~RE~~EEtGl~~~~~~~~~~~~~~~~~   82 (155)
T 2b06_A            7 TILTNICLIED-LETQRVVMQYRAPENNR--WSG-YAFPGGHVENDEAFAESVIREIYEETGLTIQNPQLVGIKNWPLDT   82 (155)
T ss_dssp             EEEEEEEEEEE-TTTTEEEEEEEC-------CCE-EECCCCBCCTTSCHHHHHHHHHHHHHSEEEESCEEEEEEEEECTT
T ss_pred             cEEEEEEEEEE-CCCCeEEEEEEECCCCC--CCC-EeccceecCCCCCHHHHHHHHHHHHhCccccCCcEEEEEeeccCC
Confidence            45667777777 455    8888876543  456 99999999999999999999999999999998888887665543 


Q ss_pred             ccceEEEEEEEEEecCCccccCCccccceEEEEeHhhHhcCCCcccchHHHHHHHHHHhhc
Q 039665          197 FFRKSDLFFVCMLRPRNFHIQKQDSEIAAAQWMQAEDYAAQPYVLKHQMFNYICQICLTKS  257 (275)
Q Consensus       197 ~~~~~~~~f~~~~~~~~~~~~~~~~E~~~~~Wv~~eel~~~~~~~~~~~~~~~~~~~~~~~  257 (275)
                      ......++|.|...  ...  +...|..+++|++++++.++++...   .+.+++.+++..
T Consensus        83 ~~~~~~~~~~~~~~--~~~--~~~~e~~~~~W~~~~el~~~~~~~~---~~~~l~~~~~~~  136 (155)
T 2b06_A           83 GGRYIVICYKATEF--SGT--LQSSEEGEVSWVQKDQIPNLNLAYD---MLPLMEMMEAPD  136 (155)
T ss_dssp             SCEEEEEEEEECEE--EEC--CCCBTTBEEEEEEGGGGGGSCBCTT---HHHHHHHHHCTT
T ss_pred             CceEEEEEEEEEec--CCC--CCCCcceeeEEeeHHHhhhCCCChh---HHHHHHHHhCCC
Confidence            22344455555332  222  2346788999999999999887654   556666666543

>2jvb_A Protein PSU1, mRNA-decapping enzyme subunit 2; DCP2, mRNA decay, cytoplasm, hydrolase, manganese, metal-binding, mRNA processing; NMR {Saccharomyces cerevisiae}

Probab=99.80  E-value=1.3e-19  Score=144.11  Aligned_cols=126  Identities=21%  Similarity=0.285  Sum_probs=83.1

Q ss_pred             EEEEEEEeCC-ceEEEEEEecCCCCCCCceeCcceeccCCCCHHHHHHHHHHHHhCCCcceeEEEEEEeeeccccceEEE
Q 039665          125 GVGAFVMNNK-RELLVVQENNGALKGTGVWKLPTGTIEEGEDICAAAVREVKEETGIDTEFVEVLAFRQSHRSFFRKSDL  203 (275)
Q Consensus       125 ~v~~vv~~~~-~~vLLv~r~~~~~~~~~~w~lPgG~ve~gEs~~~aA~REl~EEtGl~~~~~~~l~~~~~~~~~~~~~~~  203 (275)
                      .++++|++.+ ++|||+++.     ..+.|.||||++++||++.+||+||++||||+.+..+..+..+.... ..+...+
T Consensus         6 ~~~~~i~~~~~~~vLl~~r~-----~~g~w~~PgG~ve~gEs~~~aa~RE~~EEtGl~~~~~~~~~~~~~~~-~~~~~~~   79 (146)
T 2jvb_A            6 VRGAAIFNENLSKILLVQGT-----ESDSWSFPRGKISKDENDIDCCIREVKEEIGFDLTDYIDDNQFIERN-IQGKNYK   79 (146)
T ss_dssp             CEEEEEBCTTSSEEEEECCS-----SSSCCBCCEECCCSSSCHHHHHHHHHHHHTSCCCSSSSCSSCEEEEE-ETTEEEE
T ss_pred             EEEEEEEeCCCCEEEEEEEc-----CCCcEECCcccCCCCCCHHHHHHHHHHHHHCCCchHhcccccccccc-cCCceEE
Confidence            3667788865 899999876     35899999999999999999999999999999887542222111111 1223344


Q ss_pred             EEEEEEecCCccccC-CccccceEEEEeHhhHhcCCCcccch--HHHHHHHHHHhh
Q 039665          204 FFVCMLRPRNFHIQK-QDSEIAAAQWMQAEDYAAQPYVLKHQ--MFNYICQICLTK  256 (275)
Q Consensus       204 ~f~~~~~~~~~~~~~-~~~E~~~~~Wv~~eel~~~~~~~~~~--~~~~~~~~~~~~  256 (275)
                      +|++........... +++|+.++.|++++++.++.......  ++..++..+..+
T Consensus        80 ~~~~~~~~~~~~~~~~~~~E~~~~~W~~~~el~~~~~~~~~~~~l~~~~~~~l~~~  135 (146)
T 2jvb_A           80 IFLISGVSEVFNFKPQVRNEIDKIEWFDFKKISKTMYKSNIKYYLINSMMRPLSMW  135 (146)
T ss_dssp             EEEECCCCSSSCCCCCCSSSCCCEEEEEHHHHHTGGGCSSCCCHHHHHHHHHHHHH
T ss_pred             EEEEEeccccccCCcCCcchhheeEEeEHHHHHhhhcccchhhhhHHHHHHHHHHH
Confidence            555432222222222 36789999999999999976654332  333444444333

>1hzt_A Isopentenyl diphosphate delta-isomerase; dimethylallyl, isoprenoids; 1.45A {Escherichia coli} SCOP: d.113.1.2 PDB: 1hx3_A 1r67_A 1x84_A* 1x83_A* 1ppv_A* 1nfz_A* 1nfs_A* 1ppw_A* 1pvf_A 2veh_A* 2vej_A 2vnp_A* 2vnq_A 2g74_A 2g73_A* 2b2k_A 1i9a_A 1q54_A* 1ow2_A* 3hyq_A*

Probab=99.79  E-value=1.6e-19  Score=150.41  Aligned_cols=130  Identities=17%  Similarity=0.161  Sum_probs=93.6

Q ss_pred             EEEEEEEeCCceEEEEEEecCCCCCCCceeC-cceeccCCCCHHHHHHHHHHHHhCCCccee-EEEEEEeeec--c-c--
Q 039665          125 GVGAFVMNNKRELLVVQENNGALKGTGVWKL-PTGTIEEGEDICAAAVREVKEETGIDTEFV-EVLAFRQSHR--S-F--  197 (275)
Q Consensus       125 ~v~~vv~~~~~~vLLv~r~~~~~~~~~~w~l-PgG~ve~gEs~~~aA~REl~EEtGl~~~~~-~~l~~~~~~~--~-~--  197 (275)
                      +|++++++.+++|||++|.......+|.|.| |||++++||++.+||+||++||||+.+..+ ..++.+....  . .  
T Consensus        34 ~v~~~i~~~~g~vLl~~R~~~~~~~~g~w~~~PgG~ve~gEt~~~aa~REl~EEtGl~~~~~~~~~~~~~~~~~~~~~~~  113 (190)
T 1hzt_A           34 AFSSWLFNAKGQLLVTRRALSKKAWPGVWTNSVCGHPQLGESNEDAVIRRCRYELGVEITPPESIYPDFRYRATDPSGIV  113 (190)
T ss_dssp             CEEEEEECTTCCEEEEEECTTCSSSTTCEEESEEECCCTTCCHHHHHHHHHHHHHCCCBSCCEEEETTCEEEEECTTSCE
T ss_pred             EEEEEEEcCCCEEEEEEeCCCCCCCCCcccCcccccCCCCCCHHHHHHHHHHHHHCCCchhhheeeeeEEEEeeCCCCCc
Confidence            5778889888999999987554446799999 999999999999999999999999999877 6665332211  1 1  


Q ss_pred             cceEEEEEEEEEecCCccccCCccccceEEEEeHhhHhcCCCccc---chHHHHHHHHHHhhc
Q 039665          198 FRKSDLFFVCMLRPRNFHIQKQDSEIAAAQWMQAEDYAAQPYVLK---HQMFNYICQICLTKS  257 (275)
Q Consensus       198 ~~~~~~~f~~~~~~~~~~~~~~~~E~~~~~Wv~~eel~~~~~~~~---~~~~~~~~~~~~~~~  257 (275)
                      .....++|+|...   ..+..+++|+.+++|++++++.++.....   .+.++.+++.+++..
T Consensus       114 ~~~~~~~f~~~~~---~~~~~~~~E~~~~~W~~~~el~~~~~~~~~~~~p~~~~~~~~~~~~~  173 (190)
T 1hzt_A          114 ENEVCPVFAARTT---SALQINDDEVMDYQWCDLADVLHGIDATPWAFSPWMVMQATNREARK  173 (190)
T ss_dssp             EEEECCEEEEEBC---SCCCCCTTTEEEEEEECHHHHHHHHHHCGGGBCHHHHHHHHSHHHHH
T ss_pred             ceEEEEEEEEecC---CCCcCCccceeeEEEecHHHHHHHHHcChhhcCchHHHHHHHHHHHH
Confidence            1233456666542   34455678999999999999988633222   234556666555544

>2fvv_A Diphosphoinositol polyphosphate phosphohydrolase 1; nudix, inositol polyphosphate metabolism, structural genomics, structural genomics consortium; HET: IHP; 1.25A {Homo sapiens} SCOP: d.113.1.1 PDB: 2q9p_A* 2duk_A 3mcf_A*

Probab=99.79  E-value=4.3e-19  Score=148.76  Aligned_cols=111  Identities=19%  Similarity=0.315  Sum_probs=80.7

Q ss_pred             eeEEEEEEE--eCCceEEEEEEecCCCCCCCceeCcceeccCCCCHHHHHHHHHHHHhCCCcceeEEEEEEeeeccccce
Q 039665          123 RVGVGAFVM--NNKRELLVVQENNGALKGTGVWKLPTGTIEEGEDICAAAVREVKEETGIDTEFVEVLAFRQSHRSFFRK  200 (275)
Q Consensus       123 ~v~v~~vv~--~~~~~vLLv~r~~~~~~~~~~w~lPgG~ve~gEs~~~aA~REl~EEtGl~~~~~~~l~~~~~~~~~~~~  200 (275)
                      +..++++++  +.+++|||++|.+    .++.|.||||++|+||++.+||+||++||||+++....+++.+....  ...
T Consensus        40 ~~~~~~vi~~~~~~~~vLLv~r~~----~~g~W~lPgG~ve~gEt~~eaa~REl~EEtGl~~~~~~~l~~~~~~~--~~~  113 (194)
T 2fvv_A           40 KKRAACLCFRSESEEEVLLVSSSR----HPDRWIVPGGGMEPEEEPSVAAVREVCEEAGVKGTLGRLVGIFENQE--RKH  113 (194)
T ss_dssp             EEEEEEEEESSTTCCEEEEEECSS----CTTSEECSEEECCTTCCHHHHHHHHHHHHHCEEEEEEEEEEEEEETT--TTE
T ss_pred             cccEEEEEEEECCCCEEEEEEEeC----CCCcEECCCCcCCCCcCHHHHHHHHHHHHhCCccccceEEEEEEcCC--Cce
Confidence            445666666  3568999999875    34799999999999999999999999999999999888888776432  234


Q ss_pred             EEEEEEEEEecCCccccCCccccceEEEEeHhhHhcCCC
Q 039665          201 SDLFFVCMLRPRNFHIQKQDSEIAAAQWMQAEDYAAQPY  239 (275)
Q Consensus       201 ~~~~f~~~~~~~~~~~~~~~~E~~~~~Wv~~eel~~~~~  239 (275)
                      ..++|+|.+...........++..+++|++++++.++..
T Consensus       114 ~~~~f~~~~~~~~~~~~~~~e~~~~~~W~~~~el~~~l~  152 (194)
T 2fvv_A          114 RTYVYVLIVTEVLEDWEDSVNIGRKREWFKIEDAIKVLQ  152 (194)
T ss_dssp             EEEEEEEEEEEECSSCHHHHHHCCCEEEEEHHHHHHHHT
T ss_pred             EEEEEEEEEccccCCCCCcccccceEEEEEHHHHHHHHh
Confidence            556777754321111111122446899999999987643

>3fk9_A Mutator MUTT protein; structural genomics, hydrolase, PSI-2, protein structure initiative; 2.50A {Bacillus halodurans}

Probab=99.79  E-value=1.8e-18  Score=144.11  Aligned_cols=121  Identities=21%  Similarity=0.277  Sum_probs=87.1

Q ss_pred             EEEEEEEeCCceEEEEEEecCCCCCCCceeCcceeccCCCCHHHHHHHHHHHHhCCCcceeEEEEEEeeeccccce----
Q 039665          125 GVGAFVMNNKRELLVVQENNGALKGTGVWKLPTGTIEEGEDICAAAVREVKEETGIDTEFVEVLAFRQSHRSFFRK----  200 (275)
Q Consensus       125 ~v~~vv~~~~~~vLLv~r~~~~~~~~~~w~lPgG~ve~gEs~~~aA~REl~EEtGl~~~~~~~l~~~~~~~~~~~~----  200 (275)
                      .+++++.+ +++|||++|.     ..|.|.||||++++||++.+||+||++||||+.+....+++.+.........    
T Consensus         6 v~~~vi~~-~~~vLL~~r~-----~~g~W~lPGG~ve~gEs~~~aa~REl~EEtGl~~~~~~~~~~~~~~~~~~~~~~~~   79 (188)
T 3fk9_A            6 VTNCIVVD-HDQVLLLQKP-----RRGWWVAPGGKMEAGESILETVKREYWEETGITVKNPELKGIFSMVIFDEGKIVSE   79 (188)
T ss_dssp             EEEEEEEE-TTEEEEEECT-----TTCCEECCEEECCTTCCHHHHHHHHHHHHHSCEESSCEEEEEEEEEEEETTEEEEE
T ss_pred             EEEEEEEE-CCEEEEEEeC-----CCCeEECCeecccCCCCHHHHHHHHHHHHHCCCCCCceEEEEEEEEecCCCcceEE
Confidence            34555555 6899999985     3689999999999999999999999999999999988888776655433221    


Q ss_pred             -EEEEEEEEEecCCccccCCccccceEEEEeHhhHhcCCCcccchHHHHHHHHHHhhc
Q 039665          201 -SDLFFVCMLRPRNFHIQKQDSEIAAAQWMQAEDYAAQPYVLKHQMFNYICQICLTKS  257 (275)
Q Consensus       201 -~~~~f~~~~~~~~~~~~~~~~E~~~~~Wv~~eel~~~~~~~~~~~~~~~~~~~~~~~  257 (275)
                       ..++|.|  ....+.+. ...|..+++|++++++.++++...   .+.++..+++..
T Consensus        80 ~~~~~f~a--~~~~~~~~-~~~e~~~~~W~~~~el~~~~l~~~---~~~~l~~~l~~~  131 (188)
T 3fk9_A           80 WMLFTFKA--TEHEGEML-KQSPEGKLEWKKKDEVLELPMAAG---DKWIFKHVLHSD  131 (188)
T ss_dssp             EEEEEEEE--SCEESCCC-SEETTEEEEEEEGGGGGGSCCCHH---HHHHHHHHTTCC
T ss_pred             EEEEEEEE--ECCCCCCc-CCCCCEeEEEEEHHHhhhCCCCHH---HHHHHHHHHcCC
Confidence             3344444  32223322 234556899999999999877654   456666666553

>1k2e_A Nudix homolog; nudix/MUTT-like fold, mixed alpha/beta, dimer, putative NUDI hydrolase, structural genomics, unknown function; 1.80A {Pyrobaculum aerophilum} SCOP: d.113.1.1 PDB: 1jrk_A 1k26_A

Probab=99.79  E-value=4.6e-19  Score=142.93  Aligned_cols=104  Identities=19%  Similarity=0.288  Sum_probs=74.9

Q ss_pred             eEEEEEEEeCCceEEEEEEecCCCCCCCceeCcceeccCCCCHHHHHHHHHHHHhCCCcceeEEEEEEee----------
Q 039665          124 VGVGAFVMNNKRELLVVQENNGALKGTGVWKLPTGTIEEGEDICAAAVREVKEETGIDTEFVEVLAFRQS----------  193 (275)
Q Consensus       124 v~v~~vv~~~~~~vLLv~r~~~~~~~~~~w~lPgG~ve~gEs~~~aA~REl~EEtGl~~~~~~~l~~~~~----------  193 (275)
                      +.++++|++ +++|||++|.+     .|.|.||||++++||++.+||+||++||||+++.....++....          
T Consensus         2 ~~~~~vi~~-~~~vLL~~r~~-----~g~W~lPgG~ve~gEs~~~aa~REl~EEtGl~~~~~~~~~~~~~~~~~~~~~~~   75 (156)
T 1k2e_A            2 IVTSGVLVE-NGKVLLVKHKR-----LGVYIYPGGHVEHNETPIEAVKREFEEETGIVVEPIGFTYGIIDENAVERPMPL   75 (156)
T ss_dssp             EEEEEECEE-TTEEEEEECTT-----TCSEECSEEECCTTCCHHHHHHHHHHHHHSEEEEECCCCCCCBSSSEEECCCCS
T ss_pred             eEEEEEEEE-CCEEEEEEEcC-----CCcEECCeeecCCCCCHHHHHHHHHHHHHCCcceeccceeeecccccccccccc
Confidence            357788888 88999999863     57899999999999999999999999999999876655331110          


Q ss_pred             -------eccc-c-ceEEEEEEEEEecCCccccCCccccceEEEEeHhhHhcCCCccc
Q 039665          194 -------HRSF-F-RKSDLFFVCMLRPRNFHIQKQDSEIAAAQWMQAEDYAAQPYVLK  242 (275)
Q Consensus       194 -------~~~~-~-~~~~~~f~~~~~~~~~~~~~~~~E~~~~~Wv~~eel~~~~~~~~  242 (275)
                             .... . .....+|+|..         ...|..+++|++++++.++++...
T Consensus        76 ~~~~~~~~~~~~~~~~~~~~f~~~~---------~~~e~~~~~W~~~~el~~~~~~~~  124 (156)
T 1k2e_A           76 VILEEVVKYPEETHIHFDLIYLVKR---------VGGDLKNGEWIDVREIDRIETFPN  124 (156)
T ss_dssp             EEEEEEEECSSCEEEEEEEEEEEEE---------EEECCCSCEEEEGGGGGGSCBSTT
T ss_pred             eeeeeeecCCCCceEEEEEEEEEEe---------cCCcEeeeEEeCHHHHhcCCCChH
Confidence                   0111 0 11223455532         234678899999999998876544

>3f13_A Putative nudix hydrolase family member; structural genomics, PSI-2, protein structure initiative; 1.70A {Chromobacterium violaceum}

Probab=99.77  E-value=4.3e-18  Score=138.74  Aligned_cols=115  Identities=18%  Similarity=0.228  Sum_probs=79.6

Q ss_pred             eEEEEEEEeCCceEEEEEEecCCCCCCCceeCcceeccCCCCHHHHHHHHHHHHhCCCcceeEEEEEEeeeccccceEEE
Q 039665          124 VGVGAFVMNNKRELLVVQENNGALKGTGVWKLPTGTIEEGEDICAAAVREVKEETGIDTEFVEVLAFRQSHRSFFRKSDL  203 (275)
Q Consensus       124 v~v~~vv~~~~~~vLLv~r~~~~~~~~~~w~lPgG~ve~gEs~~~aA~REl~EEtGl~~~~~~~l~~~~~~~~~~~~~~~  203 (275)
                      +.+++++++.++++||++|+      .|.|.||||++++||++.+||+||++||||+.+.....++.+....    ...+
T Consensus        16 ~~~~~~ii~~~~~vLL~~r~------~g~w~lPgG~ve~gEs~~~aa~REl~EEtGl~~~~~~~l~~~~~~~----~~~~   85 (163)
T 3f13_A           16 ARRATAIIEMPDGVLVTASR------GGRYNLPGGKANRGELRSQALIREIREETGLRINSMLYLFDHITPF----NAHK   85 (163)
T ss_dssp             EEEEEEECEETTEEEEEECC---------BBCSEEECCTTCCHHHHHHHHHHHHHCCCCCEEEEEEEEECSS----EEEE
T ss_pred             eEEEEEEEEeCCEEEEEEEC------CCeEECCceeCCCCCCHHHHHHHHHHHHHCcccceeEEEEEEecCC----eEEE
Confidence            44555666667889999875      3789999999999999999999999999999998888876543322    5556


Q ss_pred             EEEEEEecCCccccCCccccceEEEEeHhhHhcCCCcccchHHHHHHHHHHhh
Q 039665          204 FFVCMLRPRNFHIQKQDSEIAAAQWMQAEDYAAQPYVLKHQMFNYICQICLTK  256 (275)
Q Consensus       204 ~f~~~~~~~~~~~~~~~~E~~~~~Wv~~eel~~~~~~~~~~~~~~~~~~~~~~  256 (275)
                      +|+|..   .+.+... +|+.+++|++ .+...+.+...   .+.+++.+++.
T Consensus        86 ~f~~~~---~~~~~~~-~E~~~~~W~~-~~~~~~~l~~~---~~~il~~~~~~  130 (163)
T 3f13_A           86 VYLCIA---QGQPKPQ-NEIERIALVS-SPDTDMDLFVE---GRAILRRYARL  130 (163)
T ss_dssp             EEEEEC----CCCCCC-TTCCEEEEES-STTCSSCBCHH---HHHHHHHHHHH
T ss_pred             EEEEEE---CCcCccC-CCceEEEEEC-cccccCCCCHH---HHHHHHHHHHh
Confidence            777753   3344433 4889999999 44444444433   44455555443

>3e57_A Uncharacterized protein TM1382; structural genomics, nudix hydrolase, PSI-2, protein structure initiative; 1.89A {Thermotoga maritima}

Probab=99.75  E-value=1.5e-18  Score=146.72  Aligned_cols=108  Identities=16%  Similarity=0.241  Sum_probs=75.0

Q ss_pred             EEEEEEeCCceEEEEEEecCCC--CCCCceeC-cceeccCCCC--H----HHHHHHHHHHHhCCCcceeEEEEEEeeecc
Q 039665          126 VGAFVMNNKRELLVVQENNGAL--KGTGVWKL-PTGTIEEGED--I----CAAAVREVKEETGIDTEFVEVLAFRQSHRS  196 (275)
Q Consensus       126 v~~vv~~~~~~vLLv~r~~~~~--~~~~~w~l-PgG~ve~gEs--~----~~aA~REl~EEtGl~~~~~~~l~~~~~~~~  196 (275)
                      +..+|++.+++|||++|...+.  ...+.|.+ |||++|+||+  +    .+||+||++||||+++....+++.+.....
T Consensus        70 i~~~II~~~grvLl~~R~~~~~e~~~~g~w~~gPGGhVE~GEs~~p~EtleeAa~REl~EEtGl~v~~~~~ig~~~~~~~  149 (211)
T 3e57_A           70 IPYVVIMDGDRVLITKRTTKQSEKRLHNLYSLGIGGHVREGDGATPREAFLKGLEREVNEEVDVSLRELEFLGLINSSTT  149 (211)
T ss_dssp             EEEEEEEETTEEEEEEC------------CBSSEECCCBGGGCSSHHHHHHHHHHHHHHHHEEEEEEEEEEEEEEECCSS
T ss_pred             EEEEEEEECCEEEEEEECCCCCcccccCCcccccceEEeCCCCCCchhhHHHHHHHHHHHHhCCeeeccEEEEEEeccCC
Confidence            4445555588999999975431  13478999 9999999998  4    999999999999999988888888765322


Q ss_pred             ccc--eEEEEEEEEEecCCccccCCccccceEEEEeHhhHhcC
Q 039665          197 FFR--KSDLFFVCMLRPRNFHIQKQDSEIAAAQWMQAEDYAAQ  237 (275)
Q Consensus       197 ~~~--~~~~~f~~~~~~~~~~~~~~~~E~~~~~Wv~~eel~~~  237 (275)
                      ..+  ....+|.|...  .+  .+.+.|..+++|++++++.++
T Consensus       150 ~~~~~~l~~~f~~~~~--~g--~~~~~E~~~~~W~~~~eL~~~  188 (211)
T 3e57_A          150 EVSRVHLGALFLGRGK--FF--SVKEKDLFEWELIKLEELEKF  188 (211)
T ss_dssp             HHHHTEEEEEEEEEEE--EE--EESCTTTCEEEEEEHHHHHHH
T ss_pred             CCCeEEEEEEEEEEeC--Cc--eeCCCCeEEEEEEEHHHHHHh
Confidence            212  23345777543  22  335667889999999999987

>2fml_A MUTT/nudix family protein; structural genomics, PSI, protein structure initiative, midwest center structural genomics, MCSG; 2.26A {Enterococcus faecalis} SCOP: a.4.5.68 d.113.1.6

Probab=99.74  E-value=5e-17  Score=143.14  Aligned_cols=113  Identities=18%  Similarity=0.276  Sum_probs=81.5

Q ss_pred             CCCCcceeEEEEEEEe--C---CceEEEEEEecCCCCCCCceeCcceeccCCCCHHHHHHHHHHHHhCCCcc--eeEEEE
Q 039665          117 PANASHRVGVGAFVMN--N---KRELLVVQENNGALKGTGVWKLPTGTIEEGEDICAAAVREVKEETGIDTE--FVEVLA  189 (275)
Q Consensus       117 p~~~~~~v~v~~vv~~--~---~~~vLLv~r~~~~~~~~~~w~lPgG~ve~gEs~~~aA~REl~EEtGl~~~--~~~~l~  189 (275)
                      +.+..+.++|+++|+.  +   +++|||++|.+.+  ..|.|.||||++++||++.+||+||++||||+.+.  .+..++
T Consensus        33 ~~~~~p~v~v~~vv~~~~~~~~~~~VLLv~R~~~p--~~g~W~lPGG~ve~gEs~~~AA~REl~EEtGl~v~~~~l~~l~  110 (273)
T 2fml_A           33 PEYEKPSLTVDMVLLCYNKEADQLKVLLIQRKGHP--FRNSWALPGGFVNRNESTEDSVLRETKEETGVVISQENIEQLH  110 (273)
T ss_dssp             CCCCCCEEEEEEEEEEEETTTTEEEEEEEEECSSS--STTCEECCEEECCTTSCHHHHHHHHHHHHHCCCCCGGGEEEEE
T ss_pred             ccCCCCceEEEEEEEEEcCCCCCcEEEEEEccCCC--CCCcEECCccCCCCCcCHHHHHHHHHHHHHCCCCCcCcEEEEE
Confidence            3455667788888876  2   3489999998654  46899999999999999999999999999997654  455555


Q ss_pred             EEeeeccc--cceEEEEEEEEEecCCccccCCccccceEEEEeHhhH
Q 039665          190 FRQSHRSF--FRKSDLFFVCMLRPRNFHIQKQDSEIAAAQWMQAEDY  234 (275)
Q Consensus       190 ~~~~~~~~--~~~~~~~f~~~~~~~~~~~~~~~~E~~~~~Wv~~eel  234 (275)
                      .+......  .....++|+|.+...  . ....+|..++.|++++++
T Consensus       111 ~~~~~~r~~~~~~~~~~y~a~~~~~--~-~~~~~E~~~~~W~~~~e~  154 (273)
T 2fml_A          111 SFSRPDRDPRGWVVTVSYLAFIGEE--P-LIAGDDAKEVHWFNLERH  154 (273)
T ss_dssp             EECCTTSSTTSSEEEEEEEEECCCC--C-CCCCTTEEEEEEEEEEEE
T ss_pred             EEcCCCCCCCceEEEEEEEEEeCCC--C-CCCCcceeeEEEEEhhHh
Confidence            54432221  124556677755422  2 335678899999999974

>2qjo_A Bifunctional NMN adenylyltransferase/nudix hydrol; two individual domains, hydrolase; HET: APR NAD; 2.60A {Synechocystis SP}

Probab=99.74  E-value=2.6e-17  Score=148.58  Aligned_cols=129  Identities=22%  Similarity=0.260  Sum_probs=83.7

Q ss_pred             CcceeEEEEEEEeCCceEEEEEEecCCCCCCCceeCcceeccCCCCHHHHHHHHHHHHhCCCcceeEEEE------EEee
Q 039665          120 ASHRVGVGAFVMNNKRELLVVQENNGALKGTGVWKLPTGTIEEGEDICAAAVREVKEETGIDTEFVEVLA------FRQS  193 (275)
Q Consensus       120 ~~~~v~v~~vv~~~~~~vLLv~r~~~~~~~~~~w~lPgG~ve~gEs~~~aA~REl~EEtGl~~~~~~~l~------~~~~  193 (275)
                      +...++|+++|++ +++|||++|.+.+  ++|.|.||||++|+||++.+||+||++||||+++....+++      .+..
T Consensus       200 ~~~~~~v~~vi~~-~~~vLL~~r~~~~--~~g~w~lPgG~ve~gE~~~~aa~REl~EEtGl~~~~~~~~~~~~~~~~~~~  276 (341)
T 2qjo_A          200 APTFITTDAVVVQ-AGHVLMVRRQAKP--GLGLIALPGGFIKQNETLVEGMLRELKEETRLKVPLPVLRGSIVDSHVFDA  276 (341)
T ss_dssp             CCCEEEEEEEEEE-TTEEEEEECCSSS--STTCEECSEEECCTTSCHHHHHHHHHHHHHCCSSCHHHHHHTEEEEEEECC
T ss_pred             CCCceEEEEEEEe-CCEEEEEEecCCC--CCCeEECCCCcCCCCCCHHHHHHHHHhhhhCCccccccccccccceEEEeC
Confidence            3456778888875 6899999997643  47899999999999999999999999999999987544321      2211


Q ss_pred             ecc--ccceEEEEEEEEEecCCccccCCccccceEEEEeHhhHhcC--CCcccchHHHHHHHHHH
Q 039665          194 HRS--FFRKSDLFFVCMLRPRNFHIQKQDSEIAAAQWMQAEDYAAQ--PYVLKHQMFNYICQICL  254 (275)
Q Consensus       194 ~~~--~~~~~~~~f~~~~~~~~~~~~~~~~E~~~~~Wv~~eel~~~--~~~~~~~~~~~~~~~~~  254 (275)
                      ...  ......++|+|.+.........+++|+.+++|++++++.++  ++...   .+.+++.++
T Consensus       277 ~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~e~~~~~W~~~~el~~~~~~~~~~---~~~il~~~~  338 (341)
T 2qjo_A          277 PGRSLRGRTITHAYFIQLPGGELPAVKGGDDAQKAWWMSLADLYAQEEQIYED---HFQIIQHFV  338 (341)
T ss_dssp             TTSCTTSCEEEEEEEEECCSSSCCCCC------CEEEEEHHHHHHTGGGBCTT---HHHHHHHHC
T ss_pred             CCCCCCCcEEEEEEEEEecCCCcCccCCCCceeeEEEeeHHHHhhhhhhhchH---HHHHHHHHH
Confidence            111  11234567777654322111235678999999999999987  34333   334444444

>2qjt_B Nicotinamide-nucleotide adenylyltransferase; two individual domains, hydrolase; HET: AMP; 2.30A {Francisella tularensis} PDB: 2r5w_B

Probab=99.74  E-value=4.7e-17  Score=147.73  Aligned_cols=133  Identities=20%  Similarity=0.250  Sum_probs=90.7

Q ss_pred             CCcceeEEEEEEEeCCceEEEEEEecCCCCCCCceeCcceeccCCCCHHHHHHHHHHHHhCCCcceeEE----EEEEee-
Q 039665          119 NASHRVGVGAFVMNNKRELLVVQENNGALKGTGVWKLPTGTIEEGEDICAAAVREVKEETGIDTEFVEV----LAFRQS-  193 (275)
Q Consensus       119 ~~~~~v~v~~vv~~~~~~vLLv~r~~~~~~~~~~w~lPgG~ve~gEs~~~aA~REl~EEtGl~~~~~~~----l~~~~~-  193 (275)
                      ++...++|+++|++ +++|||++|.+.+  +++.|+||||++|+||++.+||+||++||||+++....+    ...... 
T Consensus       204 ~~~~~~~v~~vv~~-~~~vLL~~r~~~~--~~g~w~lPgG~ve~gEt~~~aa~REl~EEtGl~v~~~~~~~~~~~~~~~~  280 (352)
T 2qjt_B          204 FKPNFVTVDALVIV-NDHILMVQRKAHP--GKDLWALPGGFLECDETIAQAIIRELFEETNINLTHEQLAIAKRCEKVFD  280 (352)
T ss_dssp             SCCEEEEEEEEEEE-TTEEEEEEESSSS--STTCEECSEEECCTTSCHHHHHHHHHHHHHCCSCCHHHHHHHEEEEEEEC
T ss_pred             CCCCceEEEEEEEE-CCEEEEEEEcCCC--CCCeEECCCCcCCCCCCHHHHHHHHHHHhhCCCcccchhcceeeeeEEec
Confidence            33556778888875 6899999998643  468999999999999999999999999999999874322    121111 


Q ss_pred             eccc---cceEEEEEEEEEecCCcccc-CCccccceEEEEeH-hhHhcC--CCcccchHHHHHHHHHHhhc
Q 039665          194 HRSF---FRKSDLFFVCMLRPRNFHIQ-KQDSEIAAAQWMQA-EDYAAQ--PYVLKHQMFNYICQICLTKS  257 (275)
Q Consensus       194 ~~~~---~~~~~~~f~~~~~~~~~~~~-~~~~E~~~~~Wv~~-eel~~~--~~~~~~~~~~~~~~~~~~~~  257 (275)
                      .+..   .....++|++.+......+. .+++|+.+++|+++ +++.++  .+...   .+.+++.+++.+
T Consensus       281 ~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~E~~~~~W~~~~~el~~~~~~~~~~---~~~il~~~~~~l  348 (352)
T 2qjt_B          281 YPDRSVRGRTISHVGLFVFDQWPSLPEINAADDAKDVKWISLGSNIKNICDRMLED---HYQIITILLEEC  348 (352)
T ss_dssp             CTTSCTTSEEEEEEEEEEECSCSSCCCCCCCTTEEEEEEEESSHHHHHTTTSBSTT---HHHHHHHHHHHT
T ss_pred             CCCCCCCccEEEEEEEEEEeCCCCCCccCCCccceEEEEecHHHHHHhhhhhhChh---HHHHHHHHHHHh
Confidence            1111   11245667776543221122 24678999999999 999987  33332   445666666555

>3fsp_A A/G-specific adenine glycosylase; protein-DNA complex, DNA glycosylase, transition state analog, DNA repair; HET: NRI; 2.20A {Geobacillus stearothermophilus} PDB: 3fsq_A* 1rrs_A* 1vrl_A* 1rrq_A* 3g0q_A*

Probab=99.72  E-value=4.1e-17  Score=149.59  Aligned_cols=124  Identities=12%  Similarity=0.121  Sum_probs=97.6

Q ss_pred             ceeEEEEEEEeCCceEEEEEEecCCCCCCCceeCcceeccCCCCHHHHHHHHHHHHhCCCcceeEEEEEEeeeccccceE
Q 039665          122 HRVGVGAFVMNNKRELLVVQENNGALKGTGVWKLPTGTIEEGEDICAAAVREVKEETGIDTEFVEVLAFRQSHRSFFRKS  201 (275)
Q Consensus       122 ~~v~v~~vv~~~~~~vLLv~r~~~~~~~~~~w~lPgG~ve~gEs~~~aA~REl~EEtGl~~~~~~~l~~~~~~~~~~~~~  201 (275)
                      .+..++++|.|.+++|||+||...+. ++|.|+||||++|+| ++.+|++||++||||+.+.....++.+.+.+.++...
T Consensus       239 ~~~~~~~vi~~~~g~vLL~rR~~~g~-~~GlWefPGG~ve~g-t~~~al~REl~EE~Gl~v~~~~~l~~~~h~~~h~~~~  316 (369)
T 3fsp_A          239 QVPLAVAVLADDEGRVLIRKRDSTGL-LANLWEFPSCETDGA-DGKEKLEQMVGEQYGLQVELTEPIVSFEHAFSHLVWQ  316 (369)
T ss_dssp             EEEEEEEEEECSSSEEEEEECCSSST-TTTCEECCEEECSSS-CTHHHHHHHHTTSSSCCEEECCCCCEEEEECSSEEEE
T ss_pred             eEEEEEEEEEeCCCEEEEEECCCCCC-cCCcccCCCcccCCC-CcHHHHHHHHHHHhCCceeeecccccEEEEcceEEEE
Confidence            34456667777889999999986543 689999999999999 9999999999999999998888777777777766666


Q ss_pred             EEEEEEEEecCCccccCCccccceEEEEeHhhHhcCCCcccchHHHHHHHHHHhhc
Q 039665          202 DLFFVCMLRPRNFHIQKQDSEIAAAQWMQAEDYAAQPYVLKHQMFNYICQICLTKS  257 (275)
Q Consensus       202 ~~~f~~~~~~~~~~~~~~~~E~~~~~Wv~~eel~~~~~~~~~~~~~~~~~~~~~~~  257 (275)
                      .++|.+.....       ..|..+++|++++++.+++++..   .+.+++.+.+.+
T Consensus       317 ~~~~~~~~~~~-------~~e~~~~~Wv~~~el~~~~l~~~---~~~il~~l~~~~  362 (369)
T 3fsp_A          317 LTVFPGRLVHG-------GPVEEPYRLAPEDELKAYAFPVS---HQRVWREYKEWA  362 (369)
T ss_dssp             EEEEEEEECCS-------SCCCTTEEEEEGGGGGGSCCCHH---HHHHHHHHHHHT
T ss_pred             EEEEEEEEcCC-------CCCccccEEeeHHHhhhCCCCHH---HHHHHHHHHHHh
Confidence            67777755321       35678899999999999887654   556666666554

>3fjy_A Probable MUTT1 protein; dimer, protein structure initiative II), NYSGXRC, 11181H, structural genomics; 2.15A {Bifidobacterium adolescentis atcc 1570ORGANISM_TAXID}

Probab=99.71  E-value=1.1e-16  Score=146.28  Aligned_cols=105  Identities=22%  Similarity=0.242  Sum_probs=76.9

Q ss_pred             CCceEEEEEEecCCCCCCCceeCcceeccCCCCHHHHHHHHHHHHhCCCcceeEEEEEEeeeccc-------------cc
Q 039665          133 NKRELLVVQENNGALKGTGVWKLPTGTIEEGEDICAAAVREVKEETGIDTEFVEVLAFRQSHRSF-------------FR  199 (275)
Q Consensus       133 ~~~~vLLv~r~~~~~~~~~~w~lPgG~ve~gEs~~~aA~REl~EEtGl~~~~~~~l~~~~~~~~~-------------~~  199 (275)
                      ++.+|||++|.     ..+.|.||||++|+||++.+||+||++||||+.+....+++.....+..             ..
T Consensus        36 ~~~~vLLv~r~-----~~g~W~lPgG~ve~gEs~~~AA~REl~EEtGl~~~~~~~l~~~~~~~~~~g~~~~~~~~~~~~~  110 (364)
T 3fjy_A           36 DSIEVCIVHRP-----KYDDWSWPKGKLEQNETHRHAAVREIGEETGSPVKLGPYLCEVEYPLSEEGKKTRHSHDCTADT  110 (364)
T ss_dssp             TTEEEEEEEET-----TTTEEECCEEECCTTCCHHHHHHHHHHHHHSCCEEEEEEEEEEC--------------------
T ss_pred             CceEEEEEEcC-----CCCCEECCcCCCCCCCCHHHHHHHHHHHHhCCeeeeccccceEEEeccCCCcccccccccccCc
Confidence            34589999986     3489999999999999999999999999999999888888765543332             13


Q ss_pred             eEEEEEEEEEecCC----------ccccCCccccceEEEEeHhhHhcCCCccc
Q 039665          200 KSDLFFVCMLRPRN----------FHIQKQDSEIAAAQWMQAEDYAAQPYVLK  242 (275)
Q Consensus       200 ~~~~~f~~~~~~~~----------~~~~~~~~E~~~~~Wv~~eel~~~~~~~~  242 (275)
                      ...++|++......          .....+++|+.+++|++++++.++.....
T Consensus       111 ~~~~~f~~~~~~~~~~~~l~~~~~~~~~~~~~E~~~~~W~~~~e~~~~~~~~~  163 (364)
T 3fjy_A          111 KHTLYWMAQPISADDAEHLLDAFGPVHRADVGEINDIVWVSVREARKILSHST  163 (364)
T ss_dssp             -CEEEEEEEECCHHHHHTTHHHHCCCCCCCTTTCCEEEEEEHHHHHHHCSCHH
T ss_pred             eEEEEEEEEecCCccccccccccCccccCCccceeeeecCcHHHHHHHhcchh
Confidence            55667777654321          11234568999999999999998765443

>2dho_A Isopentenyl-diphosphate delta-isomerase 1; alpha/beta protein; 1.60A {Homo sapiens} PDB: 2i6k_A* 2icj_A 2ick_A*

Probab=99.70  E-value=1.8e-16  Score=136.65  Aligned_cols=111  Identities=19%  Similarity=0.253  Sum_probs=83.7

Q ss_pred             eEEEEEEEeCCceEEEEEEecCCCCCCCceeCc-ceeccCC------CC---HHHHHHHHHHHHhCCCcc-----eeEEE
Q 039665          124 VGVGAFVMNNKRELLVVQENNGALKGTGVWKLP-TGTIEEG------ED---ICAAAVREVKEETGIDTE-----FVEVL  188 (275)
Q Consensus       124 v~v~~vv~~~~~~vLLv~r~~~~~~~~~~w~lP-gG~ve~g------Es---~~~aA~REl~EEtGl~~~-----~~~~l  188 (275)
                      .++.++++|.+++|||+||...+...+|.|++| ||++++|      |+   +.+||+||++||||+.+.     .+..+
T Consensus        60 ~av~v~v~~~~g~lLLq~R~~~k~~~pg~W~~p~gG~v~~Ge~E~~~E~~~~~~~Aa~REl~EElGi~~~~v~~~~l~~l  139 (235)
T 2dho_A           60 RAFSVFLFNTENKLLLQQRSDAKITFPGCFTNTCCSHPLSNPAELEESDALGVRRAAQRRLKAELGIPLEEVPPEEINYL  139 (235)
T ss_dssp             EEEEEEEECTTCCEEEEEECTTCSSSTTCEESSEEECCBSSHHHHCCGGGHHHHHHHHHHHHHHHCCCGGGSCGGGSEEE
T ss_pred             EEEEEEEEcCCCEEEEEEecCcCCCCCCcEEeccCceecCCCcccccccchhHHHHHHHHHHHHHCCCccccChhhcEEE
Confidence            357788899889999999877665678999999 5999999      88   599999999999999875     24666


Q ss_pred             EEEeeecc-cc----ceEEEEEEEEEecCCccccCCccccceEEEEeHhhHhcC
Q 039665          189 AFRQSHRS-FF----RKSDLFFVCMLRPRNFHIQKQDSEIAAAQWMQAEDYAAQ  237 (275)
Q Consensus       189 ~~~~~~~~-~~----~~~~~~f~~~~~~~~~~~~~~~~E~~~~~Wv~~eel~~~  237 (275)
                      +.+..... ..    ....++|++..   ...+.++++|+.+++|++++++.++
T Consensus       140 ~~~~y~~~~~~~~~~~e~~~vf~~~~---~~~~~~~~~Ev~~~~wv~~~el~~~  190 (235)
T 2dho_A          140 TRIHYKAQSDGIWGEHEIDYILLVRM---NVTLNPDPNEIKSYCYVSKEELKEL  190 (235)
T ss_dssp             EEEEEEEECSSSBEEEEEEEEEEEEC---CCCCCCCTTTEEEEEEECHHHHHHH
T ss_pred             EEEEEeccCCCccceeEEEEEEEEEE---CCCCcCChHHEEEEEEEcHHHHHHH
Confidence            65442221 11    12345666653   2455667889999999999999875

>2pny_A Isopentenyl-diphosphate delta-isomerase 2; carotenoid biosynthesis, cholesterol biosynthesis, isomerase isoprene biosynthesis, lipid synthesis; HET: GOL; 1.81A {Homo sapiens}

Probab=99.69  E-value=1.8e-16  Score=137.41  Aligned_cols=110  Identities=16%  Similarity=0.207  Sum_probs=83.2

Q ss_pred             EEEEEEEeCCceEEEEEEecCCCCCCCceeCcc-eeccCC------CCH---HHHHHHHHHHHhCCCcc-----eeEEEE
Q 039665          125 GVGAFVMNNKRELLVVQENNGALKGTGVWKLPT-GTIEEG------EDI---CAAAVREVKEETGIDTE-----FVEVLA  189 (275)
Q Consensus       125 ~v~~vv~~~~~~vLLv~r~~~~~~~~~~w~lPg-G~ve~g------Es~---~~aA~REl~EEtGl~~~-----~~~~l~  189 (275)
                      ++.++++|.+++|||+||...+...+|.|++|+ |++++|      |++   .+||+||++||||+.+.     .+..++
T Consensus        72 av~v~v~~~~g~lLLqrRs~~K~~~pG~W~~p~gG~v~~G~~E~~~Et~~~~~eAA~REl~EElGi~~~~v~~~~l~~l~  151 (246)
T 2pny_A           72 AFSVVLFNTKNRILIQQRSDTKVTFPGYFTDSCSSHPLYNPAELEEKDAIGVRRAAQRRLQAELGIPGEQISPEDIVFMT  151 (246)
T ss_dssp             EEEEEEECTTCCEEEEEECTTCSSSTTCBCCSEEECCBSSHHHHCCGGGHHHHHHHHHHHHHHHCCCTTTCCGGGSEEEE
T ss_pred             EEEEEEEeCCCEEEEEEecCCCCCCCCceEeccCceeccCCcccccccchhHHHHHHHHHHHHHCCCccccCccccEEEE
Confidence            577888998899999999876666789999995 999999      887   99999999999999865     245666


Q ss_pred             EEeeec-cc--c--ceEEEEEEEEEecCCccccCCccccceEEEEeHhhHhcC
Q 039665          190 FRQSHR-SF--F--RKSDLFFVCMLRPRNFHIQKQDSEIAAAQWMQAEDYAAQ  237 (275)
Q Consensus       190 ~~~~~~-~~--~--~~~~~~f~~~~~~~~~~~~~~~~E~~~~~Wv~~eel~~~  237 (275)
                      .+.... ..  .  +...++|++..   ..++.++++|+.+++|++++++.++
T Consensus       152 ~~~y~~~~~~~~~~~e~~~vf~~~~---~~~~~~~~~Ev~~~~wv~~eel~~~  201 (246)
T 2pny_A          152 IYHHKAKSDRIWGEHEICYLLLVRK---NVTLNPDPSETKSILYLSQEELWEL  201 (246)
T ss_dssp             EEEEEEESSSSBEEEEEEEEEEEEC---CCCCCCCTTTEEEEEEECHHHHHHH
T ss_pred             EEEEEecCCCceeeeEEEEEEEEEE---CCCCCCChHHeeEEEEEeHHHHHHH
Confidence            543222 11  1  12345565543   2455667889999999999999875

>1u20_A U8 snoRNA-binding protein X29; modified nudix hydrolase fold, hydrolase; 2.10A {Xenopus laevis} SCOP: d.113.1.1 PDB: 2a8t_A* 2a8q_A* 2a8p_A* 2a8r_A* 2a8s_A*

Probab=99.62  E-value=3.4e-16  Score=132.77  Aligned_cols=105  Identities=15%  Similarity=0.163  Sum_probs=76.8

Q ss_pred             EEEEEEeCCceEEEEEEecCCCCCCCceeCcceeccCCC-CHHHHHHHHHHHHhCCCcceeE-----EEEEEeeeccccc
Q 039665          126 VGAFVMNNKRELLVVQENNGALKGTGVWKLPTGTIEEGE-DICAAAVREVKEETGIDTEFVE-----VLAFRQSHRSFFR  199 (275)
Q Consensus       126 v~~vv~~~~~~vLLv~r~~~~~~~~~~w~lPgG~ve~gE-s~~~aA~REl~EEtGl~~~~~~-----~l~~~~~~~~~~~  199 (275)
                      +.+++++.+++|||++|.      ++.|+||||++|+|| ++.+||+||++||||+.+....     .++.....+. ..
T Consensus        47 vv~~i~~~~~~vLl~~r~------~g~w~~PGG~ve~gE~t~~~aa~REl~EEtGl~~~~~~l~~~~~~~~~~~~~~-~~  119 (212)
T 1u20_A           47 KLFDRVPIRRVLLMMMRF------DGRLGFPGGFVDTRDISLEEGLKRELEEELGPALATVEVTEDDYRSSQVREHP-QK  119 (212)
T ss_dssp             EETTTEECCEEEEEEEET------TSCEECSEEEECTTTSCHHHHHHHHHHHHHCGGGGGCCCCGGGEEEEEEECTT-SC
T ss_pred             EEEEEEecCCEEEEEEeC------CCeEECCCcccCCCCCCHHHHHHHHHHHHHCCCccccceeeeeEEEeccccCC-Cc
Confidence            445556778899998873      578999999999999 9999999999999999987553     4554444333 45


Q ss_pred             eEEEEEEEEEecCCc--------cccCCccccceEEEEeHhhHhcC
Q 039665          200 KSDLFFVCMLRPRNF--------HIQKQDSEIAAAQWMQAEDYAAQ  237 (275)
Q Consensus       200 ~~~~~f~~~~~~~~~--------~~~~~~~E~~~~~Wv~~eel~~~  237 (275)
                      ...++|+|.......        ....++.|..++.|+|++++.+.
T Consensus       120 ~~~~~f~~~~~~~~~~~~e~~~~~~~~~~~Ev~~~~wvpl~el~~~  165 (212)
T 1u20_A          120 CVTHFYIKELKLEEIERIEAEAVNAKDHGLEVMGLIRVPLYTLRDR  165 (212)
T ss_dssp             EEEEEEEEECCHHHHHHHHHHHTTSTTBTTTEEEEEECCCSBCTTS
T ss_pred             EEEEEEEEEecCCCcccccccccccccCCcceEEEEEEEHHHhhhh
Confidence            667788876532110        01123567889999999999764

>3dup_A MUTT/nudix family protein; nudix superfamily hydrolase, hydrolase 3 family, structural protein structure initiative, PSI; HET: MSE; 1.80A {Rhodospirillum rubrum atcc 11170}

Probab=99.53  E-value=6.7e-14  Score=124.17  Aligned_cols=115  Identities=12%  Similarity=0.098  Sum_probs=83.3

Q ss_pred             eEEEEEEEeCCc---eEEEEEEecCCCCCCCce-eCcceeccCCCCHHHHHHHHHHHHhCCCcce---eEEEEEEeee--
Q 039665          124 VGVGAFVMNNKR---ELLVVQENNGALKGTGVW-KLPTGTIEEGEDICAAAVREVKEETGIDTEF---VEVLAFRQSH--  194 (275)
Q Consensus       124 v~v~~vv~~~~~---~vLLv~r~~~~~~~~~~w-~lPgG~ve~gEs~~~aA~REl~EEtGl~~~~---~~~l~~~~~~--  194 (275)
                      .+|-+.+++.++   ++||.||...+..++|.| .+++|++++||++.+||+||+.||+|+.+..   +..++.+...  
T Consensus       119 ~~vh~~~~~~~~~~~~lll~rRs~~K~~~PG~wd~svaG~i~~GEs~~eaA~REl~EElGI~~~~~~~l~~~g~i~y~~~  198 (300)
T 3dup_A          119 YGVHLNGYVGAGADLHLWIGRRSPDKSVAPGKLDNMVAGGQPADLSLRQNLIKECAEEADLPEALARQAIPVGAITYCME  198 (300)
T ss_dssp             EEEEEEEEESCGGGCEEEEEEECTTCSSSTTCEEESEEEECCTTSCHHHHHHHHHHHHHCCCHHHHTTCEEEEEEEEEEE
T ss_pred             EEEEEEEEEecCCeeEEEEEeCCCcccCCCCccccccccCCCCCCCHHHHHHHHHHHHhCCChhhhhhccccceEEEEEe
Confidence            356777787666   999999998888899999 5999999999999999999999999998753   2333332211  


Q ss_pred             -c-cccceEEEEEEEEEecCCccccCCccccceEEEEeHhhHhcCCC
Q 039665          195 -R-SFFRKSDLFFVCMLRPRNFHIQKQDSEIAAAQWMQAEDYAAQPY  239 (275)
Q Consensus       195 -~-~~~~~~~~~f~~~~~~~~~~~~~~~~E~~~~~Wv~~eel~~~~~  239 (275)
                       . +......++|.+.+. ....+.++++|+.+++|++++|+.++..
T Consensus       199 ~~~G~~~E~~~vy~~~l~-~~~~p~~~~~EV~~~~~v~~~El~~~l~  244 (300)
T 3dup_A          199 SPAGIKPDTLFLYDLALP-EDFRPHNTDGEMADFMLWPAAKVVEAVR  244 (300)
T ss_dssp             ETTEEEEEEEEEEEEECC-TTCCCCCTTSSEEEEEEEEHHHHHHHHH
T ss_pred             cCCCeEEEEEEEEEEEec-CCCcCCCCchHhheEEEECHHHHHHHHh
Confidence             1 111223344444333 2334466889999999999999987643

>1q33_A Pyrophosphatase, ADP-ribose pyrophosphatase; nudix fold, hydrolase; HET: BGC; 1.81A {Homo sapiens} SCOP: d.113.1.1 PDB: 1qvj_A*

Probab=99.53  E-value=1.5e-13  Score=121.91  Aligned_cols=114  Identities=13%  Similarity=0.221  Sum_probs=70.0

Q ss_pred             eEEEEEEecCCCCCCCceeCcceeccCCCCHHHHHHHHHHHHhCCCc------------ceeEEE---E--EEeee---c
Q 039665          136 ELLVVQENNGALKGTGVWKLPTGTIEEGEDICAAAVREVKEETGIDT------------EFVEVL---A--FRQSH---R  195 (275)
Q Consensus       136 ~vLLv~r~~~~~~~~~~w~lPgG~ve~gEs~~~aA~REl~EEtGl~~------------~~~~~l---~--~~~~~---~  195 (275)
                      +|||++|..     .+.|.||||++++||++.+||+||++||||+.+            ....++   +  .+...   +
T Consensus       140 ~vLl~~r~~-----~g~W~lPGG~Ve~GEs~~eAA~REl~EETGl~~~~~~~~~~~l~~~l~~l~~~~g~~vy~~~~~dp  214 (292)
T 1q33_A          140 QFVAIKRKD-----CGEWAIPGGMVDPGEKISATLKREFGEEALNSLQKTSAEKREIEEKLHKLFSQDHLVIYKGYVDDP  214 (292)
T ss_dssp             EEEEEECTT-----TCSEECCCEECCTTCCHHHHHHHHHHHHHSCGGGSCSSHHHHHHHHHHHHTTTSEEEEEEEECCCT
T ss_pred             EEEEEEecC-----CCcEeCCCcccCCCCCHHHHHHHHHHHHhCCccccccccchhhHHHHHHHhhcccceeecccccCC
Confidence            699998873     478999999999999999999999999999983            111111   1  11111   1


Q ss_pred             ccc---ceEEEEEEEEEecCC---ccccCCccccceEEEEeHhhHhcCCCcccchHHHHHHHHHHhhccC
Q 039665          196 SFF---RKSDLFFVCMLRPRN---FHIQKQDSEIAAAQWMQAEDYAAQPYVLKHQMFNYICQICLTKSEK  259 (275)
Q Consensus       196 ~~~---~~~~~~f~~~~~~~~---~~~~~~~~E~~~~~Wv~~eel~~~~~~~~~~~~~~~~~~~~~~~~~  259 (275)
                      ...   .....+|++......   .......+|+.+++|++++++..+...     .+.+++.+++.++.
T Consensus       215 r~~d~~~~~~~~f~~~~~~g~~~~~~~~~~~~E~~~~~W~~~del~~L~~~-----h~~il~~~~~~~~a  279 (292)
T 1q33_A          215 RNTDNAWMETEAVNYHDETGEIMDNLMLEAGDDAGKVKWVDINDKLKLYAS-----HSQFIKLVAEKRDA  279 (292)
T ss_dssp             TCCSSEEEEEEEEEEEESSSTTTTTCCCCCCTTCSEEEEEECCTTCCCSTT-----HHHHHHHHHHHHTC
T ss_pred             CCCcccEEEEEEEEEEeCCCccccccccCCCCccceEEEEEcccCcccCHh-----HHHHHHHHHHHhcC
Confidence            111   112334444432111   111234678999999999999876332     23445555554443

>3qsj_A Nudix hydrolase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MSE; 1.70A {Alicyclobacillus acidocaldarius subsp}

Probab=99.47  E-value=4.9e-13  Score=114.70  Aligned_cols=113  Identities=21%  Similarity=0.275  Sum_probs=76.5

Q ss_pred             ceeEEEEEEEeC--Cc--eEEEEEEecCCCCCCCceeCcceeccCCCC--------------------HHHHHHHHHHHH
Q 039665          122 HRVGVGAFVMNN--KR--ELLVVQENNGALKGTGVWKLPTGTIEEGED--------------------ICAAAVREVKEE  177 (275)
Q Consensus       122 ~~v~v~~vv~~~--~~--~vLLv~r~~~~~~~~~~w~lPgG~ve~gEs--------------------~~~aA~REl~EE  177 (275)
                      .+.++.+|++++  ++  +|||+||.......+|.|.||||++|++|+                    +..||+||++||
T Consensus         7 ~r~aA~lill~~~~~g~~~vLl~~R~~~~~~~~g~~~fPGG~vd~~d~~~~~~~~g~~~~~~~~~~~a~~~aAiRE~~EE   86 (232)
T 3qsj_A            7 IRKAATLVVIRDGANKDIEVLVVRRAKTMRFLPGFVAFPGGAADPSDAEMAKRAFGRPVCAEDDDDPALAVTALRETAEE   86 (232)
T ss_dssp             EEEEEEEEEEEECGGGCEEEEEEEECTTCSSSTTCEECSEEECCHHHHHHHHTCBSCCBTCCSTTHHHHHHHHHHHHHHH
T ss_pred             CcceEEEEEEEcCCCCCeEEEEEEccCCCCCCCCcEECCceeEecCCCCchhhhcccccccccchhhHHHHHHHHHHHHH
Confidence            355666666663  23  899999987655468999999999999987                    589999999999


Q ss_pred             hCCCcceeE------------------------------------------EEEEEeeeccccc-eEEEEEEEEEecCCc
Q 039665          178 TGIDTEFVE------------------------------------------VLAFRQSHRSFFR-KSDLFFVCMLRPRNF  214 (275)
Q Consensus       178 tGl~~~~~~------------------------------------------~l~~~~~~~~~~~-~~~~~f~~~~~~~~~  214 (275)
                      ||+.+....                                          ..+.......... ....||++.+. ...
T Consensus        87 ~Gl~l~~~~~~~~~~~~~~~~~~r~~l~~~~~~f~~~~~~~~l~~~~~~L~~~arWiTP~~~~rRfdT~FFla~lp-q~~  165 (232)
T 3qsj_A           87 IGWLLAVRDGEGTKMDTPLAPDEQADLCKGGDALSAWLSARGLAFDLGLLRRIGRFVTPPTQPVRFDTRFFLCVGQ-HLG  165 (232)
T ss_dssp             HSCCCSEECTTCCBCCSCCCHHHHHHHTTCTTHHHHHHHTTTCEEBGGGCEEEEEEECCTTSSSEEEEEEEEEECS-SCC
T ss_pred             hCceeccccccCcccChhhHHHHHHHHHcCchhHHHHHHHCCCccChhhceeeEEEcCCcCCceeEEEEEEEEECC-CCC
Confidence            999753211                                          1111111111112 34466666554 221


Q ss_pred             cccCCccccceEEEEeHhhHh
Q 039665          215 HIQKQDSEIAAAQWMQAEDYA  235 (275)
Q Consensus       215 ~~~~~~~E~~~~~Wv~~eel~  235 (275)
                      ....+..|+.++.|++++|+.
T Consensus       166 ~v~~d~~E~~~~~W~~p~eal  186 (232)
T 3qsj_A          166 EPRLHGAELDAALWTPARDML  186 (232)
T ss_dssp             CCCCCSSSEEEEEEEEHHHHH
T ss_pred             CCCCCCCceEEEEEEcHHHHH
Confidence            124577899999999999995

>2xsq_A U8 snoRNA-decapping enzyme; hydrolase, mRNA decapping, mRNA turnover, structural genomic consortium, SGC; HET: IMP; 1.72A {Homo sapiens} PDB: 3cou_A 3mgm_A

Probab=99.42  E-value=1.2e-13  Score=117.55  Aligned_cols=94  Identities=19%  Similarity=0.239  Sum_probs=64.5

Q ss_pred             eEEEEEEecCCCCCCCceeCcceeccCCC-CHHHHHHHHHHHHhCCCcce--eEEEEEEeeecc-ccceEEEEEEEEEec
Q 039665          136 ELLVVQENNGALKGTGVWKLPTGTIEEGE-DICAAAVREVKEETGIDTEF--VEVLAFRQSHRS-FFRKSDLFFVCMLRP  211 (275)
Q Consensus       136 ~vLLv~r~~~~~~~~~~w~lPgG~ve~gE-s~~~aA~REl~EEtGl~~~~--~~~l~~~~~~~~-~~~~~~~~f~~~~~~  211 (275)
                      ++||+.|.      ++.|+||||++|+|| ++.+||+||++||||+.+..  +..+..+..... ......++|+|.+..
T Consensus        66 ~~ll~~r~------~g~w~lPGG~ve~gE~t~~eaa~REl~EEtGl~~~~~~l~~l~~~~~~~~~~~~~~~~~f~~~l~~  139 (217)
T 2xsq_A           66 AILMQMRF------DGRLGFPGGFVDTQDRSLEDGLNRELREELGEAAAAFRVERTDYRSSHVGSGPRVVAHFYAKRLTL  139 (217)
T ss_dssp             EEEEEEET------TSCEECSEEECCTTCSSHHHHHHHHHHHHHCGGGGGCCCCGGGEEEEEECSSSSEEEEEEEEECCH
T ss_pred             cEEEEEcc------CCeEECCceecCCCCCCHHHHHHHHHHHHHCCCCccceeEEEEEEeecCCCCCeEEEEEEEEEecc
Confidence            56665554      478999999999999 99999999999999999873  222222222222 224566777776542


Q ss_pred             CCc--------cccCCccccceEEEEeHhhHh
Q 039665          212 RNF--------HIQKQDSEIAAAQWMQAEDYA  235 (275)
Q Consensus       212 ~~~--------~~~~~~~E~~~~~Wv~~eel~  235 (275)
                      ...        .....+.|..++.|+|++++.
T Consensus       140 ~~~~~~e~~~~~~~~~~~E~~~v~~vPl~~l~  171 (217)
T 2xsq_A          140 EELLAVEAGATRAKDHGLEVLGLVRVPLYTLR  171 (217)
T ss_dssp             HHHHHHHHHGGGSTTBTTTEEEEEECCCSBCT
T ss_pred             ccceecccccccccccCCceeeEEEEEHHHhh
Confidence            211        012235688999999999987

>3rh7_A Hypothetical oxidoreductase; FMN-binding split barrel, nudix, structural genomics, joint for structural genomics, JCSG; HET: FMN; 3.00A {Sinorhizobium meliloti}

Probab=99.39  E-value=2.9e-12  Score=114.88  Aligned_cols=116  Identities=12%  Similarity=0.206  Sum_probs=83.9

Q ss_pred             ceeEEEEEEEeCCceEEEEEEecCCCCCCCceeCcceeccCCCCHHHHHHHHHHHHh-CCCcceeEEEEEEeeeccccce
Q 039665          122 HRVGVGAFVMNNKRELLVVQENNGALKGTGVWKLPTGTIEEGEDICAAAVREVKEET-GIDTEFVEVLAFRQSHRSFFRK  200 (275)
Q Consensus       122 ~~v~v~~vv~~~~~~vLLv~r~~~~~~~~~~w~lPgG~ve~gEs~~~aA~REl~EEt-Gl~~~~~~~l~~~~~~~~~~~~  200 (275)
                      +++.|++++.+ +|+|||+  .     ..| |.||||.++.+++  ++|+||++||| |++++...+++.+....  .+.
T Consensus       182 p~~~vgaii~~-~g~vLL~--~-----~~G-W~LPG~~~~~~~~--~~a~RE~~EEttGl~v~~~~L~~v~~~~~--~~~  248 (321)
T 3rh7_A          182 GEIRLGAVLEQ-QGAVFLA--G-----NET-LSLPNCTVEGGDP--ARTLAAYLEQLTGLNVTIGFLYSVYEDKS--DGR  248 (321)
T ss_dssp             SCEEEEEEEES-SSCEEEB--C-----SSE-EBCCEEEESSSCH--HHHHHHHHHHHHSSCEEEEEEEEEEECTT--TCC
T ss_pred             CcceEEEEEEE-CCEEEEe--e-----CCC-ccCCcccCCCChh--HHHHHHHHHHhcCCEEeeceEEEEEEcCC--Cce
Confidence            45667666665 6899999  2     247 9999886655444  59999999997 99999988888876543  234


Q ss_pred             EEEEEEEEEecCCccccCCccccceEEEEeHhhHhcCCCcccchHHHHHHHHHHhhccCcc
Q 039665          201 SDLFFVCMLRPRNFHIQKQDSEIAAAQWMQAEDYAAQPYVLKHQMFNYICQICLTKSEKEY  261 (275)
Q Consensus       201 ~~~~f~~~~~~~~~~~~~~~~E~~~~~Wv~~eel~~~~~~~~~~~~~~~~~~~~~~~~~~~  261 (275)
                      ...+|.|.+..  +.       ..+++|+++++++.+.+.  .+-.+.+++.+++..+...
T Consensus       249 ~~i~f~~~~~~--g~-------~~e~~~f~~~elp~~~~~--~~~~~~~L~~y~~e~~~g~  298 (321)
T 3rh7_A          249 QNIVYHALASD--GA-------PRQGRFLRPAELAAAKFS--SSATADIINRFVLESSIGN  298 (321)
T ss_dssp             EEEEEEEEECS--SC-------CSSSEEECHHHHTTCEES--SHHHHHHHHHHHHTTSCSS
T ss_pred             EEEEEEEEeCC--CC-------eeeeEEECHHHCCCcccC--CHHHHHHHHHHHHHhhcCC
Confidence            56788886642  22       277899999999987543  2357778888877665543

>3kvh_A Protein syndesmos; NUDT16-like, NUDT16L1, nudix, RNA regulation, RNA structural genomics consortium, SGC, RNA degradation, RNA B protein; 1.70A {Homo sapiens}

Probab=99.07  E-value=2.1e-10  Score=94.08  Aligned_cols=92  Identities=11%  Similarity=0.116  Sum_probs=59.6

Q ss_pred             EEEEEEecCCCCCCCceeCcceeccCCC-CHHHHHHHHHHHHhCC-CcceeEEEEEEeeeccccceEEEEEEEEEecCCc
Q 039665          137 LLVVQENNGALKGTGVWKLPTGTIEEGE-DICAAAVREVKEETGI-DTEFVEVLAFRQSHRSFFRKSDLFFVCMLRPRNF  214 (275)
Q Consensus       137 vLLv~r~~~~~~~~~~w~lPgG~ve~gE-s~~~aA~REl~EEtGl-~~~~~~~l~~~~~~~~~~~~~~~~f~~~~~~~~~  214 (275)
                      |||+.|.      .|.|+||||+||+|| ++++|+.||+.||+|+ .+....++......+. .....++|.|.+.....
T Consensus        46 iLmQ~R~------~G~weFPGGkVe~gE~t~e~aL~REl~EElg~~~V~~~~y~~s~~~~yp-~~V~LHfY~crl~~Ge~  118 (214)
T 3kvh_A           46 VLMQMRF------DGLLGFPGGFVDRRFWSLEDGLNRVLGLGLGCLRLTEADYLSSHLTEGP-HRVVAHLYARQLTLEQL  118 (214)
T ss_dssp             EEEEEET------TSCEECSEEEECTTTCCHHHHHHHSCCSCC---CCCGGGEEEEEEC-----CEEEEEEEEECCHHHH
T ss_pred             EEEeeee------CCEEeCCCccCCCCCCCHHHHHHHHHHHhhCCeeeeeeeeEEEEeccCC-CEEEEEEEEEEeeCCcc
Confidence            5555554      589999999999999 9999999999999997 5666666655444333 35667888886542210


Q ss_pred             ------cccCC--ccccceEEEEeHhhHh
Q 039665          215 ------HIQKQ--DSEIAAAQWMQAEDYA  235 (275)
Q Consensus       215 ------~~~~~--~~E~~~~~Wv~~eel~  235 (275)
                            .....  ..|.....-+|+=.+.
T Consensus       119 ~~lE~~A~~A~d~G~EvlGlvRVPlytl~  147 (214)
T 3kvh_A          119 HAVEISAVHSRDHGLEVLGLVRVPLYTQK  147 (214)
T ss_dssp             HHHHHHHHTSTTBTTTEEEEEEECCCBCT
T ss_pred             chhhhcccCCcccCceecceEEeeeEEec
Confidence                  01111  2466777778775554

>3bho_A Cleavage and polyadenylation specificity factor subunit 5; CPSF5, RNA processing, cleavage factor, diadenosine tetraphosphate, mRNA processing; HET: B4P; 1.80A {Homo sapiens} PDB: 3bap_A 3mdg_A 3mdi_A 2cl3_A 3n9u_A 3q2s_A 3q2t_A 2j8q_A 3p5t_A 3p6y_A

Probab=99.02  E-value=2.6e-09  Score=88.62  Aligned_cols=104  Identities=17%  Similarity=0.170  Sum_probs=65.5

Q ss_pred             eEEEEEE-EeCCc--eEEEEEEecCCCCCCCceeCcceeccCCCCHHHHHHHHHHHHhC------CCcceeEEEEEEeee
Q 039665          124 VGVGAFV-MNNKR--ELLVVQENNGALKGTGVWKLPTGTIEEGEDICAAAVREVKEETG------IDTEFVEVLAFRQSH  194 (275)
Q Consensus       124 v~v~~vv-~~~~~--~vLLv~r~~~~~~~~~~w~lPgG~ve~gEs~~~aA~REl~EEtG------l~~~~~~~l~~~~~~  194 (275)
                      .+|.+++ .++.+  +|||+|+.      .+.|.||||.+++||+..+|++||+.||+|      ...+..+.+|.....
T Consensus        59 ~sV~avil~~~~~~phVLLlq~~------~~~f~LPGGkle~gE~~~eaL~REL~EELg~~~~~~~~~eIge~lg~wwRp  132 (208)
T 3bho_A           59 RTVEGVLIVHEHRLPHVLLLQLG------TTFFKLPGGELNPGEDEVEGLKRLMTEILGRQDGVLQDWVIDDCIGNWWRP  132 (208)
T ss_dssp             EEEEEEEEEEETTEEEEEEEEEE------TTEEECSEEECCTTCCHHHHHHHHHHHHHCCCC-----CEEEEEEEEEEEC
T ss_pred             eEEEEEEEEcCCCCcEEEEEEcC------CCcEECCCcccCCCCCHHHHHHHHHHHHhCCCcCCCccEEEhheEEEEecC
Confidence            3444444 44343  79999975      258999999999999999999999999999      455556777764322


Q ss_pred             cc-------------ccceEEEEEEEEEecCCccccCCccccceEEEEeHhhHhc
Q 039665          195 RS-------------FFRKSDLFFVCMLRPRNFHIQKQDSEIAAAQWMQAEDYAA  236 (275)
Q Consensus       195 ~~-------------~~~~~~~~f~~~~~~~~~~~~~~~~E~~~~~Wv~~eel~~  236 (275)
                      ..             .-.....+|++.+.+.. .+...  ...++.-+|+=||-+
T Consensus       133 ~fet~~YPYlP~Hit~pKE~~kly~V~Lp~~~-~f~vP--kn~kL~AvPLfely~  184 (208)
T 3bho_A          133 NFEPPQYPYIPAHITKPKEHKKLFLVQLQEKA-LFAVP--KNYKLVAAPLFELYD  184 (208)
T ss_dssp             SSSSCCBSSCCTTCCSCSEEEEEEEEECCSSE-EEEEE--TTCEEEEEEHHHHTT
T ss_pred             CCCCcCCCCCCcccCchhhheeeeeEecCccc-eEecC--CCCeEEeecHHhhhc
Confidence            11             11244456666554322 11111  124456677777654

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	275
d1sjya_	158	d.113.1.1 (A:) Hypothetical protein DR1025 {Deinoc	1e-17
d2b0va1	146	d.113.1.1 (A:4-149) Hypothetical protein NE0184 {N	5e-16
d2a6ta2	151	d.113.1.7 (A:95-245) mRNA decapping enzyme Dcp2p c	1e-15
d1irya_	156	d.113.1.1 (A:) 7,8-dihydro-8-oxoguanine triphospha	1e-15
d1vcda1	126	d.113.1.1 (A:1-126) AP6A hydrolase Ndx1 {Thermus t	2e-15
d1ryaa_	160	d.113.1.5 (A:) GDP-mannose mannosyl hydrolase NudD	1e-13
d2azwa1	147	d.113.1.1 (A:2-148) Hypothetical protein EF1141 {E	2e-13
d2fvva1	135	d.113.1.1 (A:8-142) Diphosphoinositol polyphosphat	4e-13
d1xsba_	153	d.113.1.1 (A:) Diadenosine tetraphosphate hydrolas	1e-12
d1vk6a2	131	d.113.1.4 (A:126-256) NADH pyrophosphatase {Escher	1e-10
d1k2ea_	152	d.113.1.1 (A:) Hypothetical protein PAE3301 {Archa	2e-10
d2b06a1	155	d.113.1.1 (A:1-155) Hypothetical protein SP1235 (s	3e-10
d1hzta_	153	d.113.1.2 (A:) Isopentenyl diphosphate isomerase {	2e-09
d1jkna_	165	d.113.1.1 (A:) Diadenosine tetraphosphate hydrolas	9e-09
d2fb1a2	147	d.113.1.6 (A:3-149) Hypothetical protein BT0354, N	1e-08
d2o5fa1	162	d.113.1.2 (A:7-168) Hypothetical protein DR0079 {D	1e-08
d1nqza_	187	d.113.1.1 (A:) Coenzyme A pyrophosphatase {Deinoco	2e-08
d2fmla2	202	d.113.1.6 (A:3-204) Hypothetical protein EF2700, N	6e-08
d1v8ya_	158	d.113.1.1 (A:) ADP-ribose pyrophosphatase {Thermus	7e-08
d1puna_	129	d.113.1.1 (A:) Nucleoside triphosphate pyrophospho	4e-07
d2fkba1	161	d.113.1.2 (A:8-168) Hypothetical protein YfcD {Esc	4e-07
d1u20a1	196	d.113.1.1 (A:14-209) U8 snorna-binding protein x29	5e-07
d1q33a_	292	d.113.1.1 (A:) NUDT9 (mitochondrial ADP-ribose pyr	1e-06
d1vhza_	186	d.113.1.1 (A:) ADP compounds hydrolase NudE {Esche	1e-05
d1ktga_	137	d.113.1.1 (A:) Diadenosine tetraphosphate hydrolas	1e-05

>d1sjya_ d.113.1.1 (A:) Hypothetical protein DR1025 {Deinococcus radiodurans [TaxId: 1299]} Length = 158

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutT-like
domain: Hypothetical protein DR1025
species: Deinococcus radiodurans [TaxId: 1299]

 Score = 75.6 bits (185), Expect = 1e-17
 Identities = 32/115 (27%), Positives = 52/115 (45%), Gaps = 3/115 (2%)

Query: 122 HRVGVGAFVMNNKRELLVVQENN--GALKGTGVWKLPTGTIEEGEDICAAAVREVKEETG 179
                G  ++N + ++L+VQE    G  +  G+W +P+G +E+GE+   AAVRE  EETG
Sbjct: 11  ELRAAGVVLLNERGDILLVQEKGIPGHPEKAGLWHIPSGAVEDGENPQDAAVREACEETG 70

Query: 180 IDTEFVEVLA-FRQSHRSFFRKSDLFFVCMLRPRNFHIQKQDSEIAAAQWMQAED 233
           +    V+ L  +              ++    P          EIA A ++  ED
Sbjct: 71  LRVRPVKFLGAYLGRFPDGVLILRHVWLAEPEPGQTLAPAFTDEIAEASFVSRED 125

>d2b0va1 d.113.1.1 (A:4-149) Hypothetical protein NE0184 {Nitrosomonas europaea [TaxId: 915]} Length = 146

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutT-like
domain: Hypothetical protein NE0184
species: Nitrosomonas europaea [TaxId: 915]

 Score = 71.0 bits (173), Expect = 5e-16
 Identities = 30/124 (24%), Positives = 47/124 (37%), Gaps = 4/124 (3%)

Query: 123 RVGVGAFVMNNKRELLVVQENNGALKGTGVWKLPTGTIEEGEDICAAAVREVKEETGIDT 182
            V V A +  + + LLV +   G          P G +E GE I  A  REV EETG   
Sbjct: 3   NVTVAAVIEQDDKYLLVEEIPRG---TAIKLNQPAGHLEPGESIIQACSREVLEETGHSF 59

Query: 183 EFVEVLAFRQSHRSFFRKSDLFFVCMLRPRNFHIQ-KQDSEIAAAQWMQAEDYAAQPYVL 241
               +        +    + L F    +  +F    K D+ I  A W   ++  A+  + 
Sbjct: 60  LPEVLTGIYHWTCASNGTTYLRFTFSGQVVSFDPDRKLDTGIVRAAWFSIDEIRAKQAMH 119

Query: 242 KHQM 245
           +  +
Sbjct: 120 RTPL 123

>d2a6ta2 d.113.1.7 (A:95-245) mRNA decapping enzyme Dcp2p catalytic domain {Schizosaccharomyces pombe [TaxId: 4896]} Length = 151

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: mRNA decapping enzyme-like
domain: mRNA decapping enzyme Dcp2p catalytic domain
species: Schizosaccharomyces pombe [TaxId: 4896]

 Score = 70.2 bits (171), Expect = 1e-15
 Identities = 25/113 (22%), Positives = 44/113 (38%), Gaps = 6/113 (5%)

Query: 123 RVGV-GAFVMNNKRE-LLVVQENNGALKGTGVWKLPTGTIEEGEDICAAAVREVKEETGI 180
           R+ V GA +++   +  ++V+      K +  W  P G I++ E     A+REV EETG 
Sbjct: 1   RIPVRGAIMLDMSMQQCVLVKGW----KASSGWGFPKGKIDKDESDVDCAIREVYEETGF 56

Query: 181 DTEFVEVLAFRQSHRSFFRKSDLFFVCMLRPRNFHIQKQDSEIAAAQWMQAED 233
           D                 +   L+ +  +        +   EI+  +W    D
Sbjct: 57  DCSSRINPNEFIDMTIRGQNVRLYIIPGISLDTRFESRTRKEISKIEWHNLMD 109

>d1irya_ d.113.1.1 (A:) 7,8-dihydro-8-oxoguanine triphosphatase Hmth1 {Human (Homo sapiens) [TaxId: 9606]} Length = 156

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutT-like
domain: 7,8-dihydro-8-oxoguanine triphosphatase Hmth1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 70.5 bits (172), Expect = 1e-15
 Identities = 30/137 (21%), Positives = 56/137 (40%), Gaps = 15/137 (10%)

Query: 120 ASHRVGVGAFVMNNKRELLVVQENNGALKGTGVWKLPTGTIEEGEDICAAAVREVKEETG 179
            + R+     V+  +R LL +++      G G W    G ++EGE I   A RE++EE+G
Sbjct: 2   GASRLYTLVLVLQPQRVLLGMKKRG---FGAGRWNGFGGKVQEGETIEDGARRELQEESG 58

Query: 180 IDTEFVEVLAFRQSHRSFFRKSDLFFVCMLRPRNFHIQKQDSEIAAAQW----------M 229
           +  + +  +   Q    F  + +L  V +    +      +S+     W          M
Sbjct: 59  LTVDALHKVG--QIVFEFVGEPELMDVHVFCTDSIQGTPVESDEMRPCWFQLDQIPFKDM 116

Query: 230 QAEDYAAQPYVLKHQMF 246
             +D    P +L+ + F
Sbjct: 117 WPDDSYWFPLLLQKKKF 133

>d1vcda1 d.113.1.1 (A:1-126) AP6A hydrolase Ndx1 {Thermus thermophilus [TaxId: 274]} Length = 126

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutT-like
domain: AP6A hydrolase Ndx1
species: Thermus thermophilus [TaxId: 274]

 Score = 69.3 bits (169), Expect = 2e-15
 Identities = 32/111 (28%), Positives = 50/111 (45%), Gaps = 9/111 (8%)

Query: 123 RVGVGAFVMNNKRELLVVQENNGALKGTGVWKLPTGTIEEGEDICAAAVREVKEETGIDT 182
            +G G  V N KRE+L++++  G       W  P G  E GE +  AAVREV EETG+  
Sbjct: 2   ELGAGGVVFNAKREVLLLRDRMGF------WVFPKGHPEPGESLEEAAVREVWEETGVRA 55

Query: 183 EFVEVLAFRQSHRSFFRKSDLFFVCMLRPRNFHIQKQDSEIAAAQWMQAED 233
           E +  L   +       + ++ +  M   R     + +  +  A W   E+
Sbjct: 56  EVLLPLYPTRYVNPKGVEREVHWFLM---RGEGAPRLEEGMTGAGWFSPEE 103

>d1ryaa_ d.113.1.5 (A:) GDP-mannose mannosyl hydrolase NudD {Escherichia coli [TaxId: 562]} Length = 160

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: GDP-mannose mannosyl hydrolase NudD
domain: GDP-mannose mannosyl hydrolase NudD
species: Escherichia coli [TaxId: 562]

 Score = 65.3 bits (158), Expect = 1e-13
 Identities = 22/129 (17%), Positives = 43/129 (33%), Gaps = 10/129 (7%)

Query: 123 RVGVGAFVMNNKRELLVVQENNGALKGTGVWKLPTGTIEEGEDICAAAVREVKEETGIDT 182
            V +   V N++ E L+ +  N      G W +P G +++ E + AA  R    E G+  
Sbjct: 18  LVSLDFIVENSRGEFLLGKRTNR--PAQGYWFVPGGRVQKDETLEAAFERLTMAELGLRL 75

Query: 183 EFVEVLAFRQSHRSF--------FRKSDLFFVCMLRPRNFHIQKQDSEIAAAQWMQAEDY 234
                  +      +        F    +      R     +   D +    +W+ ++  
Sbjct: 76  PITAGQFYGVWQHFYDDNFSGTDFTTHYVVLGFRFRVSEEELLLPDEQHDDYRWLTSDAL 135

Query: 235 AAQPYVLKH 243
            A   V  +
Sbjct: 136 LASDNVHAN 144

>d2azwa1 d.113.1.1 (A:2-148) Hypothetical protein EF1141 {Enterococcus faecalis [TaxId: 1351]} Length = 147

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutT-like
domain: Hypothetical protein EF1141
species: Enterococcus faecalis [TaxId: 1351]

 Score = 63.7 bits (154), Expect = 2e-13
 Identities = 22/115 (19%), Positives = 36/115 (31%), Gaps = 8/115 (6%)

Query: 122 HRVGVGAFVMNNKRELLVVQENNGALKGTGVWKLPTGTIEEGEDICAAAVREVKEETGID 181
            R      V   +   +V+ +        G + LP G IE  E    A  REV EE GI 
Sbjct: 16  TRYAAYIIVSKPENNTMVLVQ-----APNGAYFLPGGEIEGTETKEEAIHREVLEELGIS 70

Query: 182 TEFVEVLAFRQSHRSFFRKSDLFFVCM---LRPRNFHIQKQDSEIAAAQWMQAED 233
            E    L     +     +   ++      +      + +         W+  E+
Sbjct: 71  VEIGCYLGEADEYFYSNHRQTAYYNPGYFYVANTWRQLSEPLERTNTLHWVAPEE 125

>d2fvva1 d.113.1.1 (A:8-142) Diphosphoinositol polyphosphate phosphohydrolase {Human (Homo sapiens) [TaxId: 9606]} Length = 135

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutT-like
domain: Diphosphoinositol polyphosphate phosphohydrolase
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 62.8 bits (152), Expect = 4e-13
 Identities = 24/112 (21%), Positives = 45/112 (40%), Gaps = 6/112 (5%)

Query: 122 HRVGVGAFVMNNKRELLVVQENNGALKGTGVWKLPTGTIEEGEDICAAAVREVKEETGID 181
            R     F   ++ E+L+V  +    +    W +P G +E  E+   AAVREV EE G+ 
Sbjct: 12  KRAACLCFRSESEEEVLLVSSS----RHPDRWIVPGGGMEPEEEPSVAAVREVCEEAGVK 67

Query: 182 TEFVEVLAFRQSHRSFFRKSDLFFVCMLRPRNFHIQKQDSEIAAAQWMQAED 233
                ++   ++     R     +V ++       +   +     +W + ED
Sbjct: 68  GTLGRLVGIFENQERKHRT--YVYVLIVTEVLEDWEDSVNIGRKREWFKIED 117

>d1xsba_ d.113.1.1 (A:) Diadenosine tetraphosphate hydrolase (Ap4A hydrolase) {Human (Homo sapiens) [TaxId: 9606]} Length = 153

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutT-like
domain: Diadenosine tetraphosphate hydrolase (Ap4A hydrolase)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 61.8 bits (149), Expect = 1e-12
 Identities = 27/115 (23%), Positives = 54/115 (46%), Gaps = 9/115 (7%)

Query: 123 RVGVGAFVMNNKRELLVVQENNGALKGTGVWKLPTGTIEEGEDICAAAVREVKEETGIDT 182
           R  +   V NN  E L++Q ++G       W  P G +E GED    A+R  +EE GI+ 
Sbjct: 17  RRCLIPKVDNNAIEFLLLQASDG----IHHWTPPKGHVEPGEDDLETALRATQEEAGIEA 72

Query: 183 EFVEVLAFRQSHRSFF----RKSDLFFVCMLRPRNFHIQKQDSEIAAAQWMQAED 233
             + ++   +   ++      K+ ++++  ++  +  I+    E  A +W+  E+
Sbjct: 73  GQLTIIEGFKRELNYVARNKPKTVIYWLAEVKDYDVEIR-LSHEHQAYRWLGLEE 126

>d1vk6a2 d.113.1.4 (A:126-256) NADH pyrophosphatase {Escherichia coli [TaxId: 562]} Length = 131

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: NADH pyrophosphatase
domain: NADH pyrophosphatase
species: Escherichia coli [TaxId: 562]

 Score = 55.9 bits (134), Expect = 1e-10
 Identities = 24/113 (21%), Positives = 40/113 (35%), Gaps = 8/113 (7%)

Query: 126 VGAFVMNNKRELLVVQENNGALKGTGVWKLPTGTIEEGEDICAAAVREVKEETGIDTEFV 185
           +   +  +   LL            GV  +  G +E GE +  A  REV EE+GI  + +
Sbjct: 6   IIVAIRRDDSILLAQHTR----HRNGVHTVLAGFVEVGETLEQAVAREVMEESGIKVKNL 61

Query: 186 EVLAFRQSHRSFFRKSDLFFVCMLRPRNFHIQKQDSEIAAAQWMQAEDYAAQP 238
             +      + +     L    M    +  I     E+  A W + +D    P
Sbjct: 62  RYVT----SQPWPFPQSLMTAFMAEYDSGDIVIDPKELLEANWYRYDDLPLLP 110

>d1k2ea_ d.113.1.1 (A:) Hypothetical protein PAE3301 {Archaeon Pyrobaculum aerophilum [TaxId: 13773]} Length = 152

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutT-like
domain: Hypothetical protein PAE3301
species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]

 Score = 56.0 bits (134), Expect = 2e-10
 Identities = 23/123 (18%), Positives = 45/123 (36%), Gaps = 15/123 (12%)

Query: 126 VGAFVMNNKRELLVVQENNGALKGTGVWKLPTGTIEEGEDICAAAVREVKEETGIDTEFV 185
           V + V+    ++L+V+      K  GV+  P G +E  E    A  RE +EETGI  E +
Sbjct: 3   VTSGVLVENGKVLLVKH-----KRLGVYIYPGGHVEHNETPIEAVKREFEEETGIVVEPI 57

Query: 186 EVLAFRQSHRSFFRKSDLFFVCMLRPRN----------FHIQKQDSEIAAAQWMQAEDYA 235
                     +  R   L  +  +              + +++   ++   +W+   +  
Sbjct: 58  GFTYGIIDENAVERPMPLVILEEVVKYPEETHIHFDLIYLVKRVGGDLKNGEWIDVREID 117

Query: 236 AQP 238
              
Sbjct: 118 RIE 120

>d2b06a1 d.113.1.1 (A:1-155) Hypothetical protein SP1235 (spr1115) {Streptococcus pneumoniae [TaxId: 1313]} Length = 155

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutT-like
domain: Hypothetical protein SP1235 (spr1115)
species: Streptococcus pneumoniae [TaxId: 1313]

 Score = 55.5 bits (133), Expect = 3e-10
 Identities = 19/106 (17%), Positives = 37/106 (34%), Gaps = 3/106 (2%)

Query: 128 AFVMNNKRELLVVQENNGALKGTGVWKLPTGTIEEGEDICAAAVREVKEETGIDTEFVEV 187
             + + + + +V+Q           +  P G +E  E    + +RE+ EETG+    ++ 
Sbjct: 13  CLIEDLETQRVVMQYRAPENNRWSGYAFPGGHVENDEAFAESVIREIYEETGLT---IQN 69

Query: 188 LAFRQSHRSFFRKSDLFFVCMLRPRNFHIQKQDSEIAAAQWMQAED 233
                           + V   +   F    Q SE     W+Q + 
Sbjct: 70  PQLVGIKNWPLDTGGRYIVICYKATEFSGTLQSSEEGEVSWVQKDQ 115

>d1hzta_ d.113.1.2 (A:) Isopentenyl diphosphate isomerase {Escherichia coli [TaxId: 562]} Length = 153

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: IPP isomerase-like
domain: Isopentenyl diphosphate isomerase
species: Escherichia coli [TaxId: 562]

 Score = 52.9 bits (126), Expect = 2e-09
 Identities = 21/119 (17%), Positives = 37/119 (31%), Gaps = 5/119 (4%)

Query: 122 HRVGVGAFVMNNKRELLVVQENNG-ALKGTGVWKLPTGTIEEGEDICAAAVREVKEETGI 180
           H     +++ N K +LLV +                 G  + GE    A +R  + E G+
Sbjct: 2   HLA-FSSWLFNAKGQLLVTRRALSKKAWPGVWTNSVCGHPQLGESNEDAVIRRCRYELGV 60

Query: 181 DTEFVEVLAFRQSHRSFF---RKSDLFFVCMLRPRNFHIQKQDSEIAAAQWMQAEDYAA 236
           +    E +     +R+        +             +Q  D E+   QW    D   
Sbjct: 61  EITPPESIYPDFRYRATDPSGIVENEVCPVFAARTTSALQINDDEVMDYQWCDLADVLH 119

>d1jkna_ d.113.1.1 (A:) Diadenosine tetraphosphate hydrolase (Ap4A hydrolase) {Narrow-leaved blue lupine (Lupinus angustifolius) [TaxId: 3871]} Length = 165

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutT-like
domain: Diadenosine tetraphosphate hydrolase (Ap4A hydrolase)
species: Narrow-leaved blue lupine (Lupinus angustifolius) [TaxId: 3871]

 Score = 51.3 bits (122), Expect = 9e-09
 Identities = 29/133 (21%), Positives = 52/133 (39%), Gaps = 25/133 (18%)

Query: 122 HRVGVGAFVMNNKRELLVVQENNGALKGTGVWKLPTGTIEEGEDICAAAVREVKEETGID 181
           +R  VG  +MNN +++      +        W++P G I+EGED   AA+RE++EETG+ 
Sbjct: 13  YRRNVGICLMNNDKKIFAASRLDI----PDAWQMPQGGIDEGEDPRNAAIRELREETGVT 68

Query: 182 TEF----------------VEVLAFRQSHRSFFRKSDLFFVCMLRPRNFHIQ-----KQD 220
           +                  V      Q    +  ++  +F+     ++  I       + 
Sbjct: 69  SAEVIAEVPYWLTYDFPPKVREKLNIQWGSDWKGQAQKWFLFKFTGQDQEINLLGDGSEK 128

Query: 221 SEIAAAQWMQAED 233
            E     W+  E 
Sbjct: 129 PEFGEWSWVTPEQ 141

>d2fb1a2 d.113.1.6 (A:3-149) Hypothetical protein BT0354, N-terminal domain {Bacteroides thetaiotaomicron [TaxId: 818]} Length = 147

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: BT0354 N-terminal domain-like
domain: Hypothetical protein BT0354, N-terminal domain
species: Bacteroides thetaiotaomicron [TaxId: 818]

 Score = 51.0 bits (121), Expect = 1e-08
 Identities = 19/123 (15%), Positives = 47/123 (38%), Gaps = 5/123 (4%)

Query: 114 DVLPANASHRVGVGAFVM---NNKRELLVVQENNGALKGTGVWKLPTGTIEEGEDICAAA 170
           +   +N +  +G+   +      +  LL+++ N     G   W L  G +++ E +  AA
Sbjct: 1   NYYSSNPTFYLGIDCIIFGFNEGEISLLLLKRNFEPAMGE--WSLMGGFVQKDESVDDAA 58

Query: 171 VREVKEETGIDTEFVEVLAFRQSHRSFFRKSDLFFVCMLRPRNFHIQKQDSEIAAAQWMQ 230
            R + E TG++  ++E +    +      +  +              ++  +   A W+ 
Sbjct: 59  KRVLAELTGLENVYMEQVGAFGAIDRDPGERVVSIAYYALININEYDRELVQKHNAYWVN 118

Query: 231 AED 233
             +
Sbjct: 119 INE 121

>d2o5fa1 d.113.1.2 (A:7-168) Hypothetical protein DR0079 {Deinococcus radiodurans str. R1 (Deinococcus radiodurans R1) [TaxId: 243230]} Length = 162

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: IPP isomerase-like
domain: Hypothetical protein DR0079
species: Deinococcus radiodurans str. R1 (Deinococcus radiodurans R1) [TaxId: 243230]

 Score = 51.0 bits (121), Expect = 1e-08
 Identities = 24/116 (20%), Positives = 47/116 (40%), Gaps = 3/116 (2%)

Query: 122 HRVGVGAFVMNNKRELLVVQEN-NGALKGTGVWKLPTGTIEEGEDICAAAVREVKEETGI 180
            RV V AF+ N++ +L + + + + +L    +     G ++ GE    A  RE +EE  +
Sbjct: 28  VRV-VNAFLRNSQGQLWIPRRSPSKSLFPNALDVSVGGAVQSGETYEEAFRREAREELNV 86

Query: 181 DTEFVEVLAFRQSHRSFFRKSDLFFVCMLRPRNFHIQKQDSEIAAAQWMQAEDYAA 236
           + + +               S    V  LR  +       ++I+  +W+  E   A
Sbjct: 87  EIDALSWRPLASFSPFQTTLSSFMCVYELRS-DATPIFNPNDISGGEWLTPEHLLA 141

>d1nqza_ d.113.1.1 (A:) Coenzyme A pyrophosphatase {Deinococcus radiodurans [TaxId: 1299]} Length = 187

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutT-like
domain: Coenzyme A pyrophosphatase
species: Deinococcus radiodurans [TaxId: 1299]

 Score = 51.0 bits (121), Expect = 2e-08
 Identities = 27/144 (18%), Positives = 47/144 (32%), Gaps = 2/144 (1%)

Query: 105 LVYWIP-ETADVLPANASHRVGVG-AFVMNNKRELLVVQENNGALKGTGVWKLPTGTIEE 162
              W+   T   L      R  V  A        +L+   ++      G    P G+++ 
Sbjct: 13  WALWLSGRTRTALELPHYRRAAVLVALTREADPRVLLTVRSSELPTHKGQIAFPGGSLDA 72

Query: 163 GEDICAAAVREVKEETGIDTEFVEVLAFRQSHRSFFRKSDLFFVCMLRPRNFHIQKQDSE 222
           GE    AA+RE +EE  +D   V +L       +         +  + P      +   E
Sbjct: 73  GETPTQAALREAQEEVALDPAAVTLLGELDDVFTPVGFHVTPVLGRIAPEALDTLRVTPE 132

Query: 223 IAAAQWMQAEDYAAQPYVLKHQMF 246
           +A        +  A P V + +  
Sbjct: 133 VAQIITPTLAELRAVPLVRERRTL 156

>d2fmla2 d.113.1.6 (A:3-204) Hypothetical protein EF2700, N-terminal domain {Enterococcus faecalis [TaxId: 1351]} Length = 202

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: BT0354 N-terminal domain-like
domain: Hypothetical protein EF2700, N-terminal domain
species: Enterococcus faecalis [TaxId: 1351]

 Score = 49.8 bits (118), Expect = 6e-08
 Identities = 25/147 (17%), Positives = 47/147 (31%), Gaps = 9/147 (6%)

Query: 91  EGFRYHHAEPDYLMLVYWIPETADVLPANASHRVGVGAFVMN---NKRELLVVQENNGAL 147
             +    +  ++L   Y   E  +      S  V +     N   ++ ++L++Q      
Sbjct: 10  NYYERQASLAEFLT-WYHQQELPE--YEKPSLTVDMVLLCYNKEADQLKVLLIQRKGHPF 66

Query: 148 KGTGVWKLPTGTIEEGEDICAAAVREVKEETGIDTEFVEVLAFR-QSHRSFFRKSDLFFV 206
           + +  W LP G +   E    + +RE KEETG+      +      S      +  +  V
Sbjct: 67  RNS--WALPGGFVNRNESTEDSVLRETKEETGVVISQENIEQLHSFSRPDRDPRGWVVTV 124

Query: 207 CMLRPRNFHIQKQDSEIAAAQWMQAED 233
             L            +     W   E 
Sbjct: 125 SYLAFIGEEPLIAGDDAKEVHWFNLER 151

>d1v8ya_ d.113.1.1 (A:) ADP-ribose pyrophosphatase {Thermus thermophilus [TaxId: 274]} Length = 158

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutT-like
domain: ADP-ribose pyrophosphatase
species: Thermus thermophilus [TaxId: 274]

 Score = 48.6 bits (115), Expect = 7e-08
 Identities = 29/112 (25%), Positives = 46/112 (41%), Gaps = 4/112 (3%)

Query: 122 HRVGVGAFVMNNKRELLVVQENNGALKGTGVWKLPTGTIEEGEDICAAAVREVKEETGID 181
           H+  V    +   R L V Q       G    ++P G IE GED   AA RE+ E+TG+ 
Sbjct: 23  HKPAVAVIALREGRMLFVRQMRPAV--GLAPLEIPAGLIEPGEDPLEAARRELAEQTGLS 80

Query: 182 TEFVEVLAFRQSHRSFFRKSDLFFVCMLRPRNFHIQKQDSEIAAAQWMQAED 233
            +   + ++  S      K+ +F    L+         + E     WM+ E+
Sbjct: 81  GDLTYLFSYFVSPGFTDEKTHVFLAENLKE--VEAHPDEDEAIEVVWMRPEE 130

>d1puna_ d.113.1.1 (A:) Nucleoside triphosphate pyrophosphorylase (MutT) {Escherichia coli [TaxId: 562]} Length = 129

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutT-like
domain: Nucleoside triphosphate pyrophosphorylase (MutT)
species: Escherichia coli [TaxId: 562]

 Score = 46.1 bits (108), Expect = 4e-07
 Identities = 24/116 (20%), Positives = 42/116 (36%), Gaps = 6/116 (5%)

Query: 123 RVGVGAFVMNNKRELLVVQENNGALKGTGVWKLPTGTIEEGEDICAAAVREVKEETGIDT 182
           ++ VG  + N   E+ + +    A       + P G IE GE    A VRE++EE GI  
Sbjct: 5   QIAVGI-IRNENNEIFITRRAADAHMA-NKLEFPGGKIEMGETPEQAVVRELQEEVGITP 62

Query: 183 EFVEVLAFRQSHRSFFRKSDLFFVCMLRPRNFHIQKQDSEIAAAQWMQAEDYAAQP 238
           +   +    +        +  F++       +  +    E    +WM      A  
Sbjct: 63  QHFSLFEKLEYEFPDRHITLWFWLV----ERWEGEPWGKEGQPGEWMSLVGLNADD 114

>d2fkba1 d.113.1.2 (A:8-168) Hypothetical protein YfcD {Escherichia coli [TaxId: 562]} Length = 161

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: IPP isomerase-like
domain: Hypothetical protein YfcD
species: Escherichia coli [TaxId: 562]

 Score = 46.7 bits (110), Expect = 4e-07
 Identities = 23/118 (19%), Positives = 40/118 (33%), Gaps = 5/118 (4%)

Query: 122 HRVGVGAFVMNNKRELLVVQENNGALKGTGVWKLP-TGTIEEGEDICAAAVREVKEETGI 180
           HR      V +   ++LV +         G+      G ++  E +  +A RE +EE GI
Sbjct: 30  HR-ATYIVVHDGMGKILVQRRTETKDFLPGMLDATAGGVVQADEQLLESARREAEEELGI 88

Query: 181 DTEFVEVLAFRQSHRSFFRKSDLFFVCMLRPRNFHIQKQDSEIAAAQWMQAEDYAAQP 238
                             R     F C+          Q+ E++   W+  E+  A+ 
Sbjct: 89  AGVPFAEHGQFYFEDKNCRVWGALFSCVSHGP---FALQEDEVSEVCWLTPEEITARC 143

>d1u20a1 d.113.1.1 (A:14-209) U8 snorna-binding protein x29 {African clawed frog (Xenopus laevis) [TaxId: 8355]} Length = 196

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutT-like
domain: U8 snorna-binding protein x29
species: African clawed frog (Xenopus laevis) [TaxId: 8355]

 Score = 47.0 bits (111), Expect = 5e-07
 Identities = 14/104 (13%), Positives = 31/104 (29%), Gaps = 13/104 (12%)

Query: 151 GVWKLPTGTIEEGED-ICAAAVREVKEETGIDTEFVEVLAF------------RQSHRSF 197
           G    P G ++  +  +     RE++EE G     VEV               +     +
Sbjct: 53  GRLGFPGGFVDTRDISLEEGLKRELEEELGPALATVEVTEDDYRSSQVREHPQKCVTHFY 112

Query: 198 FRKSDLFFVCMLRPRNFHIQKQDSEIAAAQWMQAEDYAAQPYVL 241
            ++  L  +  +     + +    E+     +       +   L
Sbjct: 113 IKELKLEEIERIEAEAVNAKDHGLEVMGLIRVPLYTLRDRVGGL 156

>d1q33a_ d.113.1.1 (A:) NUDT9 (mitochondrial ADP-ribose pyrophosphatase) {Human (Homo sapiens) [TaxId: 9606]} Length = 292

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutT-like
domain: NUDT9 (mitochondrial ADP-ribose pyrophosphatase)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.2 bits (109), Expect = 1e-06
 Identities = 13/60 (21%), Positives = 22/60 (36%), Gaps = 5/60 (8%)

Query: 136 ELLVVQENNGALKGTGVWKLPTGTIEEGEDICAAAVREVKEETGIDTEFVEVLAFRQSHR 195
           + + ++      K  G W +P G ++ GE I A   RE  EE     +           +
Sbjct: 140 QFVAIKR-----KDCGEWAIPGGMVDPGEKISATLKREFGEEALNSLQKTSAEKREIEEK 194

>d1vhza_ d.113.1.1 (A:) ADP compounds hydrolase NudE {Escherichia coli [TaxId: 562]} Length = 186

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutT-like
domain: ADP compounds hydrolase NudE
species: Escherichia coli [TaxId: 562]

 Score = 42.8 bits (100), Expect = 1e-05
 Identities = 20/113 (17%), Positives = 38/113 (33%), Gaps = 3/113 (2%)

Query: 121 SHRVGVGAFVMNNKRELLVVQENNGALKGTGVWKLPTGTIEEGEDICAAAVREVKEETGI 180
           ++R  V    + +   +L+ +   G    +       G I+ GE +  AA RE+KEE G 
Sbjct: 46  TNREAVMIVPIVDDHLILIREYAVGT--ESYELGFSKGLIDPGESVYEAANRELKEEVGF 103

Query: 181 DTEFVEVLAFRQSHRSFFRKSDLFFVCMLRPRNFHIQKQDSEIAAAQWMQAED 233
               +     + S    +  S +  V         ++  + E           
Sbjct: 104 GANDLT-FLKKLSMAPSYFSSKMNIVVAQDLYPESLEGDEPEPLPQVRWPLAH 155

>d1ktga_ d.113.1.1 (A:) Diadenosine tetraphosphate hydrolase (Ap4A hydrolase) {Caenorhabditis elegans [TaxId: 6239]} Length = 137

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutT-like
domain: Diadenosine tetraphosphate hydrolase (Ap4A hydrolase)
species: Caenorhabditis elegans [TaxId: 6239]

 Score = 41.8 bits (97), Expect = 1e-05
 Identities = 27/113 (23%), Positives = 41/113 (36%), Gaps = 9/113 (7%)

Query: 126 VGAFVM---NNKRELLVVQENNGALKGTGVWKLPTGTIEEGEDICAAAVREVKEETGIDT 182
            G  +      K E L++Q +         W  P G ++ GED   AA+RE KEE  I  
Sbjct: 5   AGLVIYRKLAGKIEFLLLQASYP----PHHWTPPKGHVDPGEDEWQAAIRETKEEANITK 60

Query: 183 EFVEVLAFRQSHRSFFRKSDLFFVCM--LRPRNFHIQKQDSEIAAAQWMQAED 233
           E + +         +  K     V     +  N    +   E    +W + ED
Sbjct: 61  EQLTIHEDCHETLFYEAKGKPKSVKYWLAKLNNPDDVQLSHEHQNWKWCELED 113

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	275
d2b0va1	146	Hypothetical protein NE0184 {Nitrosomonas europaea	99.89
d1vk6a2	131	NADH pyrophosphatase {Escherichia coli [TaxId: 562	99.89
d1vcda1	126	AP6A hydrolase Ndx1 {Thermus thermophilus [TaxId:	99.89
d1jkna_	165	Diadenosine tetraphosphate hydrolase (Ap4A hydrola	99.89
d1sjya_	158	Hypothetical protein DR1025 {Deinococcus radiodura	99.88
d1mqea_	202	ADP-ribose pyrophosphatase {Mycobacterium tubercul	99.88
d2fb1a2	147	Hypothetical protein BT0354, N-terminal domain {Ba	99.88
d1vhza_	186	ADP compounds hydrolase NudE {Escherichia coli [Ta	99.86
d1puna_	129	Nucleoside triphosphate pyrophosphorylase (MutT) {	99.86
d2fkba1	161	Hypothetical protein YfcD {Escherichia coli [TaxId	99.85
d1irya_	156	7,8-dihydro-8-oxoguanine triphosphatase Hmth1 {Hum	99.85
d1ryaa_	160	GDP-mannose mannosyl hydrolase NudD {Escherichia c	99.85
d1hzta_	153	Isopentenyl diphosphate isomerase {Escherichia col	99.84
d1v8ya_	158	ADP-ribose pyrophosphatase {Thermus thermophilus [	99.84
d2a6ta2	151	mRNA decapping enzyme Dcp2p catalytic domain {Schi	99.84
d2b06a1	155	Hypothetical protein SP1235 (spr1115) {Streptococc	99.83
d2o5fa1	162	Hypothetical protein DR0079 {Deinococcus radiodura	99.82
d2fvva1	135	Diphosphoinositol polyphosphate phosphohydrolase {	99.82
d1ktga_	137	Diadenosine tetraphosphate hydrolase (Ap4A hydrola	99.82
d1nqza_	187	Coenzyme A pyrophosphatase {Deinococcus radioduran	99.81
d1k2ea_	152	Hypothetical protein PAE3301 {Archaeon Pyrobaculum	99.81
d2azwa1	147	Hypothetical protein EF1141 {Enterococcus faecalis	99.8
d2fmla2	202	Hypothetical protein EF2700, N-terminal domain {En	99.8
d1xsba_	153	Diadenosine tetraphosphate hydrolase (Ap4A hydrola	99.79
d1g0sa_	209	ADP-ribose pyrophosphatase {Escherichia coli [TaxI	99.78
d1rrqa2	127	Adenine glycosylase MutY, C-terminal domain {Bacil	99.74
d1viua_	189	ADP-ribose pyrophosphatase homologue YffH {Escheri	99.73
d1x51a1	142	A/G-specific adenine DNA glycosylase {Human (Homo	99.52
d1q33a_	292	NUDT9 (mitochondrial ADP-ribose pyrophosphatase) {	99.49
d1u20a1	196	U8 snorna-binding protein x29 {African clawed frog	99.38

>d2b0va1 d.113.1.1 (A:4-149) Hypothetical protein NE0184 {Nitrosomonas europaea [TaxId: 915]}

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutT-like
domain: Hypothetical protein NE0184
species: Nitrosomonas europaea [TaxId: 915]

Probab=99.89  E-value=8.2e-23  Score=161.27  Aligned_cols=130  Identities=21%  Similarity=0.196  Sum_probs=97.6

Q ss_pred             eeEEEEEEEeCCceEEEEEEecCCCCCCCceeCcceeccCCCCHHHHHHHHHHHHhCCCcceeEEEEEEeeeccccceE-
Q 039665          123 RVGVGAFVMNNKRELLVVQENNGALKGTGVWKLPTGTIEEGEDICAAAVREVKEETGIDTEFVEVLAFRQSHRSFFRKS-  201 (275)
Q Consensus       123 ~v~v~~vv~~~~~~vLLv~r~~~~~~~~~~w~lPgG~ve~gEs~~~aA~REl~EEtGl~~~~~~~l~~~~~~~~~~~~~-  201 (275)
                      .++|+++|.+ ++++||++|.+.+  ..+.|.||||+++.|||+.+||+||++||||+++.....++.........+.. 
T Consensus         3 ~v~va~ii~~-~~k~Llv~r~~~~--~~~~w~~PgG~ve~gEt~~~aa~RE~~EEtGl~~~~~~~~~~~~~~~~~~~~~~   79 (146)
T d2b0va1           3 NVTVAAVIEQ-DDKYLLVEEIPRG--TAIKLNQPAGHLEPGESIIQACSREVLEETGHSFLPEVLTGIYHWTCASNGTTY   79 (146)
T ss_dssp             EEEEEEECEE-TTEEEEEEECSSS--SCCEEECSEEECCTTSCHHHHHHHHHHHHHSEEEEEEEEEEEEEEEETTTTEEE
T ss_pred             eEEEEEEEEe-CCEEEEEEEecCC--CCCEEECCeeeECCCCCHHHHHHHHHHHhheeecccceEEEEEEEecCCCCeEE
Confidence            4567666555 6899999998765  46899999999999999999999999999999999888888776665544433 


Q ss_pred             -EEEEEEEEecCCccccCCccccceEEEEeHhhHhcCCCcccchHHHHHHHHHHhh
Q 039665          202 -DLFFVCMLRPRNFHIQKQDSEIAAAQWMQAEDYAAQPYVLKHQMFNYICQICLTK  256 (275)
Q Consensus       202 -~~~f~~~~~~~~~~~~~~~~E~~~~~Wv~~eel~~~~~~~~~~~~~~~~~~~~~~  256 (275)
                       .++|++....... ....+.|+.+++|++++|+.+++.....+.+..++..+++.
T Consensus        80 ~~~~~~~~~~~~~~-~~~~~~E~~~~~W~~~~el~~~~~~~~~~~v~~~l~~y~~~  134 (146)
T d2b0va1          80 LRFTFSGQVVSFDP-DRKLDTGIVRAAWFSIDEIRAKQAMHRTPLVMQCIEDYHAG  134 (146)
T ss_dssp             EEEEEEEEEEEECT-TSCCCTTEEEEEEEEHHHHHHTGGGBSSTHHHHHHHHHHTT
T ss_pred             EEEEEEEEeecCCC-CCCCCcceeEEEEeeHHHHhhCccccCCHHHHHHHHHHHhC
Confidence             3344444332222 23356789999999999999887665556677777766653

>d1vk6a2 d.113.1.4 (A:126-256) NADH pyrophosphatase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: NADH pyrophosphatase
domain: NADH pyrophosphatase
species: Escherichia coli [TaxId: 562]

Probab=99.89  E-value=8.1e-23  Score=159.08  Aligned_cols=125  Identities=18%  Similarity=0.206  Sum_probs=96.2

Q ss_pred             EEEEEEEeCCceEEEEEEecCCCCCCCceeCcceeccCCCCHHHHHHHHHHHHhCCCcceeEEEEEEeeeccccceEEEE
Q 039665          125 GVGAFVMNNKRELLVVQENNGALKGTGVWKLPTGTIEEGEDICAAAVREVKEETGIDTEFVEVLAFRQSHRSFFRKSDLF  204 (275)
Q Consensus       125 ~v~~vv~~~~~~vLLv~r~~~~~~~~~~w~lPgG~ve~gEs~~~aA~REl~EEtGl~~~~~~~l~~~~~~~~~~~~~~~~  204 (275)
                      +|.+++.+ ++++||++|++.   .+|.|.||||++|+|||+.+||+||++||||+.+.....++......  .+...++
T Consensus         5 aViv~i~~-~~~vLL~~~~~~---~~g~w~lpGG~ve~GEt~~~aa~REl~EEtG~~~~~~~~~~~~~~~~--~~~~~~~   78 (131)
T d1vk6a2           5 CIIVAIRR-DDSILLAQHTRH---RNGVHTVLAGFVEVGETLEQAVAREVMEESGIKVKNLRYVTSQPWPF--PQSLMTA   78 (131)
T ss_dssp             EEEEEEEE-TTEEEEEEETTT---CSSCCBCEEEECCTTCCHHHHHHHHHHHHHCCEEEEEEEEEEEEEET--TEEEEEE
T ss_pred             EEEEEEEe-CCEEEEEEeccC---CCCCEecccCCCcCCCcHHHHHHHHHHHHhCCcccceeEEEEeccCc--CceEEEE
Confidence            45455555 679999988753   35799999999999999999999999999999998888887655433  3456677


Q ss_pred             EEEEEecCCccccCCccccceEEEEeHhhHhcCCCcccchHHHHHHHHHHhhccC
Q 039665          205 FVCMLRPRNFHIQKQDSEIAAAQWMQAEDYAAQPYVLKHQMFNYICQICLTKSEK  259 (275)
Q Consensus       205 f~~~~~~~~~~~~~~~~E~~~~~Wv~~eel~~~~~~~~~~~~~~~~~~~~~~~~~  259 (275)
                      |+|...  .+++..++.|+.+++|++++|+..++....  +.+.+++.+++..+.
T Consensus        79 f~~~~~--~~~~~~~~~E~~~~~W~~~~el~~l~~~~~--i~r~li~~~l~~~r~  129 (131)
T d1vk6a2          79 FMAEYD--SGDIVIDPKELLEANWYRYDDLPLLPPPGT--VARRLIEDTVAMCRA  129 (131)
T ss_dssp             EEEEEE--ECCCCCCTTTEEEEEEEETTSCCSCCCTTS--HHHHHHHHHHHHHHH
T ss_pred             EEEEEc--CCcccCCCccEEEEEEEcHHHHhhCCCChH--HHHHHHHHHHHHHHh
Confidence            777654  345666788999999999999998876543  566667766665543

>d1vcda1 d.113.1.1 (A:1-126) AP6A hydrolase Ndx1 {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutT-like
domain: AP6A hydrolase Ndx1
species: Thermus thermophilus [TaxId: 274]

Probab=99.89  E-value=1.6e-22  Score=156.27  Aligned_cols=122  Identities=27%  Similarity=0.378  Sum_probs=92.1

Q ss_pred             eeEEEEEEEeCCceEEEEEEecCCCCCCCceeCcceeccCCCCHHHHHHHHHHHHhCCCcceeEEEEEEeeecccc-ceE
Q 039665          123 RVGVGAFVMNNKRELLVVQENNGALKGTGVWKLPTGTIEEGEDICAAAVREVKEETGIDTEFVEVLAFRQSHRSFF-RKS  201 (275)
Q Consensus       123 ~v~v~~vv~~~~~~vLLv~r~~~~~~~~~~w~lPgG~ve~gEs~~~aA~REl~EEtGl~~~~~~~l~~~~~~~~~~-~~~  201 (275)
                      +++|+++|+|.+++|||++++      .|.|.||||++++|||+.+||+||++||||++++....++......... ...
T Consensus         2 ~v~agavv~~~~~~vLl~~~~------~g~w~~PgG~ve~gEt~~~aa~RE~~EEtGi~~~~~~~~~~~~~~~~~~~~~~   75 (126)
T d1vcda1           2 ELGAGGVVFNAKREVLLLRDR------MGFWVFPKGHPEPGESLEEAAVREVWEETGVRAEVLLPLYPTRYVNPKGVERE   75 (126)
T ss_dssp             EEEEEEEEECTTSCEEEEECT------TSCEECCEECCCTTCCHHHHHHHHHHHHHCCEEEEEEEEEEEEEECTTSCEEE
T ss_pred             EEEEEEEEEECCCEEEEEEcC------CCCEECCccccCCCCCHHHHHHHHHHHHcCCeeEEEEEEeeeeeccCCCeEEE
Confidence            478999999999999999865      3689999999999999999999999999999998888887655444332 344


Q ss_pred             EEEEEEEEecCCccccCCccccceEEEEeHhhHhcCCCcccchHHHHHHHHHHhhc
Q 039665          202 DLFFVCMLRPRNFHIQKQDSEIAAAQWMQAEDYAAQPYVLKHQMFNYICQICLTKS  257 (275)
Q Consensus       202 ~~~f~~~~~~~~~~~~~~~~E~~~~~Wv~~eel~~~~~~~~~~~~~~~~~~~~~~~  257 (275)
                      .++|++....   ... .++|+.+++|++++++.++...+   ..+.+++.+++++
T Consensus        76 ~~~~~~~~~~---~~~-~~~e~~~~~W~~~~e~~~~~~~~---~~~~il~~~~~~l  124 (126)
T d1vcda1          76 VHWFLMRGEG---APR-LEEGMTGAGWFSPEEARALLAFP---EDLGLLEVALERL  124 (126)
T ss_dssp             EEEEEEEEES---CCC-CCTTCCEEEEECHHHHHHHBCSH---HHHHHHHHHHHHS
T ss_pred             EEEEEEEEcC---CCC-CCccceEEEEEEHHHHhhccCCh---HHHHHHHHHHHhC
Confidence            5566665432   222 35688899999999998865432   2455666666554

>d1jkna_ d.113.1.1 (A:) Diadenosine tetraphosphate hydrolase (Ap4A hydrolase) {Narrow-leaved blue lupine (Lupinus angustifolius) [TaxId: 3871]}

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutT-like
domain: Diadenosine tetraphosphate hydrolase (Ap4A hydrolase)
species: Narrow-leaved blue lupine (Lupinus angustifolius) [TaxId: 3871]

Probab=99.89  E-value=7.9e-23  Score=165.24  Aligned_cols=128  Identities=23%  Similarity=0.400  Sum_probs=92.9

Q ss_pred             ceeEEEEEEEeCCceEEEEEEecCCCCCCCceeCcceeccCCCCHHHHHHHHHHHHhCCCcceeEEEEEEee--------
Q 039665          122 HRVGVGAFVMNNKRELLVVQENNGALKGTGVWKLPTGTIEEGEDICAAAVREVKEETGIDTEFVEVLAFRQS--------  193 (275)
Q Consensus       122 ~~v~v~~vv~~~~~~vLLv~r~~~~~~~~~~w~lPgG~ve~gEs~~~aA~REl~EEtGl~~~~~~~l~~~~~--------  193 (275)
                      +|.+|+++|+|++++|||+||..    .+|.|.||||+||.||++.+||+||++||||+++...........        
T Consensus        13 yR~~Vg~vI~n~~~~vLL~kR~~----~~g~W~~PgG~ve~gEt~~~Aa~REl~EEtGl~~~~~~~~~~~~~~~~~~~~~   88 (165)
T d1jkna_          13 YRRNVGICLMNNDKKIFAASRLD----IPDAWQMPQGGIDEGEDPRNAAIRELREETGVTSAEVIAEVPYWLTYDFPPKV   88 (165)
T ss_dssp             EEEEEEEEEECTTSCEEEEEESS----STTCEECCEECCCTTCCHHHHHHHHHHHHTCCCSEEEEEECSSCEEEECCHHH
T ss_pred             ccccEEEEEEeCCCEEEEEEEcC----CCCcccCccceEcCCCChhHHHHHHHHHhhcccccccccccccccccccccee
Confidence            57899999999999999999974    358899999999999999999999999999999876544321100        


Q ss_pred             --------eccccceEEEEEEEEEecCCccccC-----CccccceEEEEeHhhHhcCCCcccchHHHHHHHHH
Q 039665          194 --------HRSFFRKSDLFFVCMLRPRNFHIQK-----QDSEIAAAQWMQAEDYAAQPYVLKHQMFNYICQIC  253 (275)
Q Consensus       194 --------~~~~~~~~~~~f~~~~~~~~~~~~~-----~~~E~~~~~Wv~~eel~~~~~~~~~~~~~~~~~~~  253 (275)
                              .........++|++.+......+.+     ...|+.+++|++++++.++..+..+.+++.+++.+
T Consensus        89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~E~~~~~W~~~~el~~~i~~fk~~v~~~~l~~f  161 (165)
T d1jkna_          89 REKLNIQWGSDWKGQAQKWFLFKFTGQDQEINLLGDGSEKPEFGEWSWVTPEQLIDLTVEFKKPVYKEVLSVF  161 (165)
T ss_dssp             HHHHHHHTCCCCSEEEECCEEEEECSCTTTCCSSCSSSSCCCEEEEEEECTTHHHHHSCGGGHHHHHHHHHHT
T ss_pred             eceeeeeecCCccceeeEEEEEEEeCCCceeecCCCCCCCCeeEEeEECCHHHHHHhcchhhHHHHHHHHHHH
Confidence                    0111223445566655544333332     23488999999999999876665555666666554

>d1sjya_ d.113.1.1 (A:) Hypothetical protein DR1025 {Deinococcus radiodurans [TaxId: 1299]}

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutT-like
domain: Hypothetical protein DR1025
species: Deinococcus radiodurans [TaxId: 1299]

Probab=99.88  E-value=4.7e-22  Score=158.95  Aligned_cols=120  Identities=27%  Similarity=0.360  Sum_probs=91.0

Q ss_pred             ceeEEEEEEEeCCceEEEEEEecCCC--CCCCceeCcceeccCCCCHHHHHHHHHHHHhCCCcceeEEEEEEeeeccc-c
Q 039665          122 HRVGVGAFVMNNKRELLVVQENNGAL--KGTGVWKLPTGTIEEGEDICAAAVREVKEETGIDTEFVEVLAFRQSHRSF-F  198 (275)
Q Consensus       122 ~~v~v~~vv~~~~~~vLLv~r~~~~~--~~~~~w~lPgG~ve~gEs~~~aA~REl~EEtGl~~~~~~~l~~~~~~~~~-~  198 (275)
                      +..+++++++|.+++|||++|+..+.  ...|.|+||||++++||++.+||+||++||||+.+....+++........ .
T Consensus        11 ~~~a~~~vi~~~~g~iLl~~r~~~~~~~~~~g~W~~PgG~ve~gE~~~~aa~RE~~EEtGl~~~~~~~i~~~~~~~~~~~   90 (158)
T d1sjya_          11 ELRAAGVVLLNERGDILLVQEKGIPGHPEKAGLWHIPSGAVEDGENPQDAAVREACEETGLRVRPVKFLGAYLGRFPDGV   90 (158)
T ss_dssp             CEEEEEEEEBCTTCCEEEEEESCC----CCCCCEECSEEECCTTSCHHHHHHHHHHHHHSCCEEEEEEEEEEEEECTTSC
T ss_pred             ceeEEEEEEEeCCCEEEEEEEecCCCCCCCCCcEECCceecCCCCCHHHHHHHHHHHHhCccceeeEEEEEEEEECCCCC
Confidence            34468888899899999999975432  24688999999999999999999999999999999999988876544332 3


Q ss_pred             ceEEEEEEEEEecCCccccCCccccceEEEEeHhhHhcCCCcc
Q 039665          199 RKSDLFFVCMLRPRNFHIQKQDSEIAAAQWMQAEDYAAQPYVL  241 (275)
Q Consensus       199 ~~~~~~f~~~~~~~~~~~~~~~~E~~~~~Wv~~eel~~~~~~~  241 (275)
                      ....++|++...........+++|+.+++|++++|+.++....
T Consensus        91 ~~~~~~~~~~~~~~~~~~~~~~~E~~~~~w~~~~el~~l~~~~  133 (158)
T d1sjya_          91 LILRHVWLAEPEPGQTLAPAFTDEIAEASFVSREDFAQLYAAG  133 (158)
T ss_dssp             EEEEEEEEEEECSSCCCCCCCCSSEEEEEEECHHHHHHHHHTT
T ss_pred             EEEEEEEEEEEcCCcccCCCCCcceEEEEEEEHHHHhhhhhCC
Confidence            3445566665554433333445799999999999998864443

>d1mqea_ d.113.1.1 (A:) ADP-ribose pyrophosphatase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutT-like
domain: ADP-ribose pyrophosphatase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.88  E-value=4.6e-23  Score=171.87  Aligned_cols=150  Identities=17%  Similarity=0.257  Sum_probs=108.7

Q ss_pred             HHHhCCeeE----EEEccccccccchHHHhcCceeccCCCCeeeEEeecCCCcCCCCCCCcceeEEEEEEEeCCceEEEE
Q 039665           65 WRQQGKRGV----WIKLPIELANLVEPAVQEGFRYHHAEPDYLMLVYWIPETADVLPANASHRVGVGAFVMNNKRELLVV  140 (275)
Q Consensus        65 w~~~~~~~v----W~~~~~~~~~l~~~~~~~gf~~~~~~~~~~~l~~wl~~~~~~~p~~~~~~v~v~~vv~~~~~~vLLv  140 (275)
                      |+..+++.|    ||++..+.+.+  |.... ..|     +++                 .+..+|++++++++++|||+
T Consensus         1 ~~~l~s~~v~~~~~~~v~~d~v~~--pdG~~-~~~-----~~v-----------------~~~~~V~vl~~~~~~~ilLv   55 (202)
T d1mqea_           1 FETISSETLHTGAIFALRRDQVRM--PGGGI-VTR-----EVV-----------------EHFGAVAIVAMDDNGNIPMV   55 (202)
T ss_dssp             CCEEEEEEEEECSSEEEEEEEEC-------C-EEE-----EEE-----------------EECCEEEEEECCTTSEEEEE
T ss_pred             CeEccEEEEEECCEEEEEEEEEEC--CCCCE-EEE-----EEE-----------------EcCCeEEEEEECCCCEEEEE
Confidence            455566666    99999999988  32111 111     222                 12346878888999999999


Q ss_pred             EEecCCCCCCCceeCcceecc-CCCCHHHHHHHHHHHHhCCCcceeEEEEEEeeeccccceEEEEEEEEEecCCccccC-
Q 039665          141 QENNGALKGTGVWKLPTGTIE-EGEDICAAAVREVKEETGIDTEFVEVLAFRQSHRSFFRKSDLFFVCMLRPRNFHIQK-  218 (275)
Q Consensus       141 ~r~~~~~~~~~~w~lPgG~ve-~gEs~~~aA~REl~EEtGl~~~~~~~l~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~-  218 (275)
                      +|++.+. +...|+||+|++| +||++.+||+||++||||+.+..+..++.++...+......++|++........... 
T Consensus        56 rq~R~~~-~~~~welPaG~ie~~gE~~~~aA~REl~EETG~~~~~~~~l~~~~~~~g~~~~~~~~fla~~~~~~~~~~~~  134 (202)
T d1mqea_          56 YQYRHTY-GRRLWELPAGLLDVAGEPPHLTAARELREEVGLQASTWQVLVDLDTAPGFSDESVRVYLATGLREVGRPEAH  134 (202)
T ss_dssp             EEEETTT-TEEEEECCEEECCSTTCCHHHHHHHHHHHHHCEEEEEEEEEEEECSCTTTBCCCEEEEEEEEEEECCC----
T ss_pred             Eeccccc-CceEEeccccccccCCCCHHHHHHHHHhhccccccccceEeeeeeccCccCCcEEEEEEEEeccccCCCCCC
Confidence            9987654 5668999999999 799999999999999999999999999998888888788888888865443333332 


Q ss_pred             CccccceEEEEeHhhHhcCCCc
Q 039665          219 QDSEIAAAQWMQAEDYAAQPYV  240 (275)
Q Consensus       219 ~~~E~~~~~Wv~~eel~~~~~~  240 (275)
                      +++|..++.|++++|+.++...
T Consensus       135 ~eee~i~v~w~~~~e~~~~i~~  156 (202)
T d1mqea_         135 HEEADMTMGWYPIAEAARRVLR  156 (202)
T ss_dssp             ------CEEEEEHHHHHHHHTT
T ss_pred             CccceEEEEEEEHHHHHHHHHc
Confidence            3445668999999999987654

>d2fb1a2 d.113.1.6 (A:3-149) Hypothetical protein BT0354, N-terminal domain {Bacteroides thetaiotaomicron [TaxId: 818]}

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: BT0354 N-terminal domain-like
domain: Hypothetical protein BT0354, N-terminal domain
species: Bacteroides thetaiotaomicron [TaxId: 818]

Probab=99.88  E-value=1.5e-22  Score=160.61  Aligned_cols=131  Identities=17%  Similarity=0.300  Sum_probs=94.9

Q ss_pred             CCcceeEEEEEEEe--C-CceEEEEEEecCCCCCCCceeCcceeccCCCCHHHHHHHHHHHHhCCCcceeEEEEEEeeec
Q 039665          119 NASHRVGVGAFVMN--N-KRELLVVQENNGALKGTGVWKLPTGTIEEGEDICAAAVREVKEETGIDTEFVEVLAFRQSHR  195 (275)
Q Consensus       119 ~~~~~v~v~~vv~~--~-~~~vLLv~r~~~~~~~~~~w~lPgG~ve~gEs~~~aA~REl~EEtGl~~~~~~~l~~~~~~~  195 (275)
                      +++..++|.++|+.  + +.+|||++|.+.+  ..|.|.||||++++||++.+||+||++||||+++.....++.+....
T Consensus         6 ~p~~~v~Vd~Vi~~~~~~~~~vLLv~R~~~p--~~g~W~lPGG~ie~~Es~~~aa~REl~EEtGl~~~~~~~~~~~~~~~   83 (147)
T d2fb1a2           6 NPTFYLGIDCIIFGFNEGEISLLLLKRNFEP--AMGEWSLMGGFVQKDESVDDAAKRVLAELTGLENVYMEQVGAFGAID   83 (147)
T ss_dssp             SCCEEEEEEEEEEEEETTEEEEEEEECSSSS--STTCEECEEEECCTTSCHHHHHHHHHHHHHCCCSCEEEEEEEECCTT
T ss_pred             CCCcceEEEEEEEEEeCCcCEEEEEEccCCC--CCCcEeCcEeeecCCCCHHHHHHHHHHHHhCCcccceeeeeEecCCc
Confidence            44677888888863  3 3479999987654  56899999999999999999999999999999999999888765444


Q ss_pred             ccc--ceEEEEEEEEEecCCccccCCccccceEEEEeHhhHhcCCCcccchHHHHHHHHHH
Q 039665          196 SFF--RKSDLFFVCMLRPRNFHIQKQDSEIAAAQWMQAEDYAAQPYVLKHQMFNYICQICL  254 (275)
Q Consensus       196 ~~~--~~~~~~f~~~~~~~~~~~~~~~~E~~~~~Wv~~eel~~~~~~~~~~~~~~~~~~~~  254 (275)
                      ...  ....++|+|.....  ......+|..+++|+++++++++.+.+. .++...++.+.
T Consensus        84 ~~~~~~~v~~~~~~~~~~~--~~~~~~~e~~~~~W~~~~~lp~lafDH~-~ii~~a~~~lr  141 (147)
T d2fb1a2          84 RDPGERVVSIAYYALININ--EYDRELVQKHNAYWVNINELPALIFDHP-EMVDKAREMMK  141 (147)
T ss_dssp             SSSSSCEEEEEEEEECCTT--SSCHHHHHHTTEEEEETTSCCCBSTTHH-HHHHHHHHHHH
T ss_pred             ccCCCceEEEEEEEEecCC--cccCCCcchhheEEecHHhchhcccCHH-HHHHHHHHHHH
Confidence            322  23345566655432  2233456788999999999998887542 24444444443

>d1vhza_ d.113.1.1 (A:) ADP compounds hydrolase NudE {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutT-like
domain: ADP compounds hydrolase NudE
species: Escherichia coli [TaxId: 562]

Probab=99.86  E-value=6.1e-23  Score=169.15  Aligned_cols=115  Identities=17%  Similarity=0.119  Sum_probs=92.9

Q ss_pred             eEEEEEEEeCCceEEEEEEecCCCCCCCceeCcceeccCCCCHHHHHHHHHHHHhCCCcceeEEEEEEeeeccccceEEE
Q 039665          124 VGVGAFVMNNKRELLVVQENNGALKGTGVWKLPTGTIEEGEDICAAAVREVKEETGIDTEFVEVLAFRQSHRSFFRKSDL  203 (275)
Q Consensus       124 v~v~~vv~~~~~~vLLv~r~~~~~~~~~~w~lPgG~ve~gEs~~~aA~REl~EEtGl~~~~~~~l~~~~~~~~~~~~~~~  203 (275)
                      .+|.++... ++++||++++|.+. +...|+||||++|+||++.+||+||++||||+.+..+..++.++..++..+...+
T Consensus        49 ~~v~vi~~~-~~~vlLvrq~R~~~-~~~~~elP~G~ie~gE~p~~aA~REl~EEtG~~~~~~~~l~~~~~~~g~~~~~~~  126 (186)
T d1vhza_          49 EAVMIVPIV-DDHLILIREYAVGT-ESYELGFSKGLIDPGESVYEAANRELKEEVGFGANDLTFLKKLSMAPSYFSSKMN  126 (186)
T ss_dssp             CEEEEEEEE-TTEEEEEEEEETTT-TEEEEECEEEECCTTCCHHHHHHHHHHHHHSEEEEEEEEEEEEECCTTTCCCEEE
T ss_pred             cEEEEEEcc-CCEEEEEEeeecCC-CceEeecccccCCCCcCHHHHHHHHHHHHhccccccceecceeeccccccceEEE
Confidence            345444444 67899999987664 6778999999999999999999999999999999999999988888777777777


Q ss_pred             EEEEEEecCCccccCCccccceEEEEeHhhHhcCCCcc
Q 039665          204 FFVCMLRPRNFHIQKQDSEIAAAQWMQAEDYAAQPYVL  241 (275)
Q Consensus       204 ~f~~~~~~~~~~~~~~~~E~~~~~Wv~~eel~~~~~~~  241 (275)
                      +|++..... .....++.|..++.|++++|+.++....
T Consensus       127 ~~~a~~~~~-~~~~~de~E~~~~~~~~~~e~~~~i~~g  163 (186)
T d1vhza_         127 IVVAQDLYP-ESLEGDEPEPLPQVRWPLAHMMDLLEDP  163 (186)
T ss_dssp             EEEEEEEEE-CCCCCCCSSCCCEEEEEGGGGGGGGGCT
T ss_pred             EEEEEeccc-ccCCCCCCcEEEEEEEeHHHHHHHHHcC
Confidence            787754322 2344577889999999999999886544

>d1puna_ d.113.1.1 (A:) Nucleoside triphosphate pyrophosphorylase (MutT) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutT-like
domain: Nucleoside triphosphate pyrophosphorylase (MutT)
species: Escherichia coli [TaxId: 562]

Probab=99.86  E-value=2.1e-22  Score=155.91  Aligned_cols=114  Identities=20%  Similarity=0.269  Sum_probs=89.6

Q ss_pred             eEEEEEEEeCCceEEEEEEecCCCCCCCceeCcceeccCCCCHHHHHHHHHHHHhCCCcceeEEEEEEeeeccccceEEE
Q 039665          124 VGVGAFVMNNKRELLVVQENNGALKGTGVWKLPTGTIEEGEDICAAAVREVKEETGIDTEFVEVLAFRQSHRSFFRKSDL  203 (275)
Q Consensus       124 v~v~~vv~~~~~~vLLv~r~~~~~~~~~~w~lPgG~ve~gEs~~~aA~REl~EEtGl~~~~~~~l~~~~~~~~~~~~~~~  203 (275)
                      ++| +++++.+++|||+||...+. .+|.|+||||++|+||++.+||+||++||||+.+....+++...+.+.......+
T Consensus         6 vav-~ii~~~~~~vLl~~R~~~~~-~~g~W~~PgG~ve~gEs~~~a~~RE~~EE~gl~~~~~~~~~~~~~~~~~~~~~~~   83 (129)
T d1puna_           6 IAV-GIIRNENNEIFITRRAADAH-MANKLEFPGGKIEMGETPEQAVVRELQEEVGITPQHFSLFEKLEYEFPDRHITLW   83 (129)
T ss_dssp             EEE-EECBCTTSCEEEBCCCSSCS-CTTCCBCSCCSCTTTSCTTHHHHHHHHHTTCSCCCCCCCSEEEEEECSSEEEEEE
T ss_pred             EEE-EEEEECCCEEEEEEecCCCC-CCCcEECCcceecCCCchhHHHHHHHHHHhCCccccceeeeEEeecccccceeEE
Confidence            444 56677889999999876543 6799999999999999999999999999999999888888777766665555555


Q ss_pred             EEEEEEecCCccccCCccccceEEEEeHhhHhcCCCcccc
Q 039665          204 FFVCMLRPRNFHIQKQDSEIAAAQWMQAEDYAAQPYVLKH  243 (275)
Q Consensus       204 ~f~~~~~~~~~~~~~~~~E~~~~~Wv~~eel~~~~~~~~~  243 (275)
                      +|.|.  ...+++  ...|+.+++|++++++..++++..+
T Consensus        84 ~~~~~--~~~~~~--~~~E~~~~~W~~~~el~~~~~~~~~  119 (129)
T d1puna_          84 FWLVE--RWEGEP--WGKEGQPGEWMSLVGLNADDFPPAN  119 (129)
T ss_dssp             EEECC--CCSSCC--CTTSSSCCEEECGGGCCTTTSCGGG
T ss_pred             EEEEe--eccCcC--CCCccceEEEEEHHHcccCCCCcch
Confidence            66553  223333  4567889999999999998887654

>d2fkba1 d.113.1.2 (A:8-168) Hypothetical protein YfcD {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: IPP isomerase-like
domain: Hypothetical protein YfcD
species: Escherichia coli [TaxId: 562]

Probab=99.85  E-value=1.4e-20  Score=151.19  Aligned_cols=126  Identities=17%  Similarity=0.160  Sum_probs=95.1

Q ss_pred             EEEEEEEeCCceEEEEEEecCCCCCCCceeCc-ceeccCCCCHHHHHHHHHHHHhCCCcceeEEEEEEeeeccccceEEE
Q 039665          125 GVGAFVMNNKRELLVVQENNGALKGTGVWKLP-TGTIEEGEDICAAAVREVKEETGIDTEFVEVLAFRQSHRSFFRKSDL  203 (275)
Q Consensus       125 ~v~~vv~~~~~~vLLv~r~~~~~~~~~~w~lP-gG~ve~gEs~~~aA~REl~EEtGl~~~~~~~l~~~~~~~~~~~~~~~  203 (275)
                      +|.++++|.+|+|||+||.......+|.|++| ||++++||++.+||+||++||||+....+..++.+...........+
T Consensus        32 ~v~v~v~~~~g~vLl~rR~~~~~~~pg~w~~~~GG~ie~gEs~~~aa~REl~EE~Gi~~~~~~~~~~~~~~~~~~~~~~~  111 (161)
T d2fkba1          32 ATYIVVHDGMGKILVQRRTETKDFLPGMLDATAGGVVQADEQLLESARREAEEELGIAGVPFAEHGQFYFEDKNCRVWGA  111 (161)
T ss_dssp             EEEEEEECSSSCEEEEEECSSCSSSTTCEESSBCCBCBTTCCHHHHHHHHHHHHHCCBSCCCEEEEEEEEEETTEEEEEE
T ss_pred             EEEEEEEeCCCCEEEEEecCccccccccccccccccccccCcHHHHHHHHHHHHhCCccceeEEEEEEEeecCCcEEEEE
Confidence            67888999999999999976666678999887 89999999999999999999999998888777766544444334444


Q ss_pred             EEEEEEecCCccccCCccccceEEEEeHhhHhcCCCcccchHHHHHHHHHH
Q 039665          204 FFVCMLRPRNFHIQKQDSEIAAAQWMQAEDYAAQPYVLKHQMFNYICQICL  254 (275)
Q Consensus       204 ~f~~~~~~~~~~~~~~~~E~~~~~Wv~~eel~~~~~~~~~~~~~~~~~~~~  254 (275)
                      +|.+..   ..++.++++|+.+++|++++|+.+++.... +.....+..++
T Consensus       112 ~~~~~~---~~~~~~~~~Ev~~~~w~~~~el~~~~~~~~-P~~~~al~~~~  158 (161)
T d2fkba1         112 LFSCVS---HGPFALQEDEVSEVCWLTPEEITARCDEFT-PDSLKALALWM  158 (161)
T ss_dssp             EEEEEC---CCCCCCCTTTEEEEEEECHHHHHTTGGGBC-HHHHHHHHHHH
T ss_pred             EEEEEE---CCCCcCChhHeeEEEEEeHHHHhhhhhccC-CcHHHHHHHHH
Confidence            554432   345667888999999999999998754322 22334444444

>d1irya_ d.113.1.1 (A:) 7,8-dihydro-8-oxoguanine triphosphatase Hmth1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutT-like
domain: 7,8-dihydro-8-oxoguanine triphosphatase Hmth1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.85  E-value=7.1e-21  Score=152.19  Aligned_cols=118  Identities=19%  Similarity=0.206  Sum_probs=85.5

Q ss_pred             ceeEEEEEEEeCCceEEEEEEecCCCCCCCceeCcceeccCCCCHHHHHHHHHHHHhCCCcceeEEEEEEeeeccccceE
Q 039665          122 HRVGVGAFVMNNKRELLVVQENNGALKGTGVWKLPTGTIEEGEDICAAAVREVKEETGIDTEFVEVLAFRQSHRSFFRKS  201 (275)
Q Consensus       122 ~~v~v~~vv~~~~~~vLLv~r~~~~~~~~~~w~lPgG~ve~gEs~~~aA~REl~EEtGl~~~~~~~l~~~~~~~~~~~~~  201 (275)
                      +++.+.++|. .+++|||++|.+++  +.|.|.+|||++++||++.+||+||++||||+++.....++............
T Consensus         4 ~r~~~~v~i~-~~~~vLL~~r~~~~--~~g~W~lPGG~ve~gEt~~~aa~RE~~EEtGl~~~~~~~~~~~~~~~~~~~~~   80 (156)
T d1irya_           4 SRLYTLVLVL-QPQRVLLGMKKRGF--GAGRWNGFGGKVQEGETIEDGARRELQEESGLTVDALHKVGQIVFEFVGEPEL   80 (156)
T ss_dssp             CEEEEEECEE-CSSEEEEEEESSSS--SBTCEECBCCBCCTTCCHHHHHHHHHHHHHSCCBSCCCEEEEEEEEETTCSCE
T ss_pred             cEEEEEEEEE-ECCEEEEEEecCCC--CCCEEECcEeEecCCCCHHHHHHHHHHHHHCCcccceEEEEEEEEEcCCCCEE
Confidence            4665655444 57899999998654  57899999999999999999999999999999998888887665544443333


Q ss_pred             EEEEEEEEecCCccccCCccccceEEEEeHhhHhcCCCcccch
Q 039665          202 DLFFVCMLRPRNFHIQKQDSEIAAAQWMQAEDYAAQPYVLKHQ  244 (275)
Q Consensus       202 ~~~f~~~~~~~~~~~~~~~~E~~~~~Wv~~eel~~~~~~~~~~  244 (275)
                      ..++++......+.  +.+.|..+++|++++++..+++...++
T Consensus        81 ~~~~~~~~~~~~~~--~~~~ee~~~~W~~~~~l~~~~~~~~d~  121 (156)
T d1irya_          81 MDVHVFCTDSIQGT--PVESDEMRPCWFQLDQIPFKDMWPDDS  121 (156)
T ss_dssp             EEEEEECCCCBCSC--CCCCSSEEEEEEETTCCCSTTTCSSHH
T ss_pred             EEEEEEEEEeecCc--ccCCchhheEEeEHHHCCcCCCCccHH
Confidence            33444433322333  234445678999999999987765543

>d1ryaa_ d.113.1.5 (A:) GDP-mannose mannosyl hydrolase NudD {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: GDP-mannose mannosyl hydrolase NudD
domain: GDP-mannose mannosyl hydrolase NudD
species: Escherichia coli [TaxId: 562]

Probab=99.85  E-value=1.1e-20  Score=151.28  Aligned_cols=117  Identities=20%  Similarity=0.281  Sum_probs=84.8

Q ss_pred             eeEEEEEEEeCCceEEEEEEecCCCCCCCceeCcceeccCCCCHHHHHHHHHHHHhCCCcce--eEEEEEEeeecc----
Q 039665          123 RVGVGAFVMNNKRELLVVQENNGALKGTGVWKLPTGTIEEGEDICAAAVREVKEETGIDTEF--VEVLAFRQSHRS----  196 (275)
Q Consensus       123 ~v~v~~vv~~~~~~vLLv~r~~~~~~~~~~w~lPgG~ve~gEs~~~aA~REl~EEtGl~~~~--~~~l~~~~~~~~----  196 (275)
                      .++|+++|.|.+++|||++|.+.+  ++|.|.+|||++++||++.+||+||++||||+.+..  ...++.......    
T Consensus        18 ~~~v~~vi~~~~~~vLL~kR~~~~--~~g~W~lPGG~ve~gEt~~~aa~REl~EEtGl~~~~~~~~~~~~~~~~~~~~~~   95 (160)
T d1ryaa_          18 LVSLDFIVENSRGEFLLGKRTNRP--AQGYWFVPGGRVQKDETLEAAFERLTMAELGLRLPITAGQFYGVWQHFYDDNFS   95 (160)
T ss_dssp             EEEEEEEEECTTSCEEEEEECSSS--STTSEECCEEECCTTCCHHHHHHHHHHHHHSSCCCGGGSEEEEEEEEEESSBTT
T ss_pred             EEEEEEEEEeCCCeEEEEEeCCCC--CCCcEecccccccCCCcHHHHHHHHHHHHhCceEeeeeeeEEEEEEEecccccc
Confidence            578888999998999999998654  678999999999999999999999999999998754  344443332211    


Q ss_pred             --ccceEEEEEEEEEecCCccccCCccccceEEEEeHhhHhcCCCcc
Q 039665          197 --FFRKSDLFFVCMLRPRNFHIQKQDSEIAAAQWMQAEDYAAQPYVL  241 (275)
Q Consensus       197 --~~~~~~~~f~~~~~~~~~~~~~~~~E~~~~~Wv~~eel~~~~~~~  241 (275)
                        ........+.+.+..........++|+.+++|++++|+..++..+
T Consensus        96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~e~~W~~~~el~~~~~~~  142 (160)
T d1ryaa_          96 GTDFTTHYVVLGFRFRVSEEELLLPDEQHDDYRWLTSDALLASDNVH  142 (160)
T ss_dssp             BSSSCEEEEEEEEEEECCGGGCCCCSSSEEEEEEECHHHHHHCTTBC
T ss_pred             CCCcceEEEEEEEEEEecCCCccCCCcceEEEEEEEHHHhhcCcccc
Confidence              111222223333343344455567899999999999998875543

>d1hzta_ d.113.1.2 (A:) Isopentenyl diphosphate isomerase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: IPP isomerase-like
domain: Isopentenyl diphosphate isomerase
species: Escherichia coli [TaxId: 562]

Probab=99.84  E-value=4.6e-21  Score=152.98  Aligned_cols=110  Identities=22%  Similarity=0.306  Sum_probs=83.0

Q ss_pred             EEEEEEEeCCceEEEEEEecCCCCCCCceeC-cceeccCCCCHHHHHHHHHHHHhCCCcceeEEEEEE--e-eeccc-cc
Q 039665          125 GVGAFVMNNKRELLVVQENNGALKGTGVWKL-PTGTIEEGEDICAAAVREVKEETGIDTEFVEVLAFR--Q-SHRSF-FR  199 (275)
Q Consensus       125 ~v~~vv~~~~~~vLLv~r~~~~~~~~~~w~l-PgG~ve~gEs~~~aA~REl~EEtGl~~~~~~~l~~~--~-~~~~~-~~  199 (275)
                      +++++|+|++|++||+||...+...+|.|.+ |||++++|||+.+||+||++||||+++.....+...  + ..... ..
T Consensus         4 a~~v~i~n~~g~vLl~kRs~~k~~~pg~w~~~pgG~ve~gEt~~eaa~RE~~EE~Gi~~~~~~~~~~~~~y~~~~~~~~~   83 (153)
T d1hzta_           4 AFSSWLFNAKGQLLVTRRALSKKAWPGVWTNSVCGHPQLGESNEDAVIRRCRYELGVEITPPESIYPDFRYRATDPSGIV   83 (153)
T ss_dssp             CEEEEEECTTCCEEEEEECTTCSSSTTCEEESEEECCCTTCCHHHHHHHHHHHHHCCCBSCCEEEETTCEEEEECTTSCE
T ss_pred             EEEEEEEECCCEEEEEEeCCCCCCCCCceecccCceeecCCcHHHHHHHHHHHHcCceeecccceecccccccccccccc
Confidence            5788999999999999997666667899987 999999999999999999999999998877665421  1 11111 11


Q ss_pred             eEE--EEEEEEEecCCccccCCccccceEEEEeHhhHhcC
Q 039665          200 KSD--LFFVCMLRPRNFHIQKQDSEIAAAQWMQAEDYAAQ  237 (275)
Q Consensus       200 ~~~--~~f~~~~~~~~~~~~~~~~E~~~~~Wv~~eel~~~  237 (275)
                      ...  ++|.+  . ....+.++++|+.+++|++++|+.+.
T Consensus        84 ~~~~~~~~~~--~-~~~~~~~~~~Ev~~~~W~~~~el~~~  120 (153)
T d1hzta_          84 ENEVCPVFAA--R-TTSALQINDDEVMDYQWCDLADVLHG  120 (153)
T ss_dssp             EEEECCEEEE--E-BCSCCCCCTTTEEEEEEECHHHHHHH
T ss_pred             ceeEEEEEEE--e-eCCCccCChhheeEEEEeeHHHHHHH
Confidence            111  22332  2 24566777889999999999999775

>d1v8ya_ d.113.1.1 (A:) ADP-ribose pyrophosphatase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutT-like
domain: ADP-ribose pyrophosphatase
species: Thermus thermophilus [TaxId: 274]

Probab=99.84  E-value=3.9e-21  Score=154.19  Aligned_cols=114  Identities=23%  Similarity=0.350  Sum_probs=84.1

Q ss_pred             eeEEEEEEEeCCceEEEEEEecCCCCCCCceeCcceeccCCCCHHHHHHHHHHHHhCCCcceeEEEEEEeeeccccceEE
Q 039665          123 RVGVGAFVMNNKRELLVVQENNGALKGTGVWKLPTGTIEEGEDICAAAVREVKEETGIDTEFVEVLAFRQSHRSFFRKSD  202 (275)
Q Consensus       123 ~v~v~~vv~~~~~~vLLv~r~~~~~~~~~~w~lPgG~ve~gEs~~~aA~REl~EEtGl~~~~~~~l~~~~~~~~~~~~~~  202 (275)
                      ..+|++++++ ++++||++|+|.+. +...|+||||++|+||++.+||+||++||||+.++ +..++.+...++..+...
T Consensus        24 ~~aV~vl~~~-~~~vlLv~q~R~~~-~~~~~elP~G~ve~gE~~~~aA~REl~EEtG~~~~-~~~l~~~~~~~g~~~~~~  100 (158)
T d1v8ya_          24 KPAVAVIALR-EGRMLFVRQMRPAV-GLAPLEIPAGLIEPGEDPLEAARRELAEQTGLSGD-LTYLFSYFVSPGFTDEKT  100 (158)
T ss_dssp             CCEEEEEEEE-TTEEEEEECCBTTT-TBCCBBCSEEECCTTCCHHHHHHHHHHHHHSEEEE-EEEEEEEESCTTTBCCEE
T ss_pred             CCEEEEEEEE-CCEEEEEEeeecCC-CCceEecchhhccccCCHHHHHHHHHHhhcCCcce-eeeecceecCCCcceEEE
Confidence            3467777777 67999999987654 67899999999999999999999999999999875 455565666666666777


Q ss_pred             EEEEEEEecCCccccCCccccceEEEEeHhhHhcCCCc
Q 039665          203 LFFVCMLRPRNFHIQKQDSEIAAAQWMQAEDYAAQPYV  240 (275)
Q Consensus       203 ~~f~~~~~~~~~~~~~~~~E~~~~~Wv~~eel~~~~~~  240 (275)
                      ++|++..... .....+++|..++.|++++|+.++...
T Consensus       101 ~~f~a~~~~~-~~~~~d~~E~~ev~w~~~~e~~~~i~~  137 (158)
T d1v8ya_         101 HVFLAENLKE-VEAHPDEDEAIEVVWMRPEEALERHQR  137 (158)
T ss_dssp             EEEEEEEEEE-CC--------CEEEEECHHHHHHHHHT
T ss_pred             EEEEEccccc-cccCCCCCeeEEEEEEEHHHHHHHHHC
Confidence            8888754322 234556778899999999999987443

>d2a6ta2 d.113.1.7 (A:95-245) mRNA decapping enzyme Dcp2p catalytic domain {Schizosaccharomyces pombe [TaxId: 4896]}

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: mRNA decapping enzyme-like
domain: mRNA decapping enzyme Dcp2p catalytic domain
species: Schizosaccharomyces pombe [TaxId: 4896]

Probab=99.84  E-value=2.2e-21  Score=154.24  Aligned_cols=110  Identities=19%  Similarity=0.247  Sum_probs=73.0

Q ss_pred             EEEEEEEeCC-ceEEEEEEecCCCCCCCceeCcceeccCCCCHHHHHHHHHHHHhCCCcceeEEEEEEeeeccccceEEE
Q 039665          125 GVGAFVMNNK-RELLVVQENNGALKGTGVWKLPTGTIEEGEDICAAAVREVKEETGIDTEFVEVLAFRQSHRSFFRKSDL  203 (275)
Q Consensus       125 ~v~~vv~~~~-~~vLLv~r~~~~~~~~~~w~lPgG~ve~gEs~~~aA~REl~EEtGl~~~~~~~l~~~~~~~~~~~~~~~  203 (275)
                      .+||+++|.+ ++|||+|+++    ..+.|.||||+++.||++.+||+||++||||+++............... ....+
T Consensus         4 v~Gaii~~~~~~kvLLvk~~~----~~~~W~lPgG~ie~gEs~~~aa~RE~~EEtGi~~~~~~~~~~~~~~~~~-~~~~~   78 (151)
T d2a6ta2           4 VRGAIMLDMSMQQCVLVKGWK----ASSGWGFPKGKIDKDESDVDCAIREVYEETGFDCSSRINPNEFIDMTIR-GQNVR   78 (151)
T ss_dssp             EEEEEEBCSSSSEEEEEEESS----TTCCCBCSEEECCTTCCHHHHHHHHHHHHHCCCCTTTCCTTCEEEEEET-TEEEE
T ss_pred             EEEEEEEECCCCEEEEEEEeC----CCCCEECCcccccCCCCHHHHHHHHHHHHhCCCceeeeecceEEeeccc-CceEE
Confidence            3688889865 7899999864    4578999999999999999999999999999988654333222222112 22233


Q ss_pred             EEEEEEecCCccc-cCCccccceEEEEeHhhHhcCCC
Q 039665          204 FFVCMLRPRNFHI-QKQDSEIAAAQWMQAEDYAAQPY  239 (275)
Q Consensus       204 ~f~~~~~~~~~~~-~~~~~E~~~~~Wv~~eel~~~~~  239 (275)
                      +|++......... ..+.+|+.+++|++++++..+..
T Consensus        79 ~~~~~~~~~~~~~~~~~~~Ei~~~~W~~~~el~~~~~  115 (151)
T d2a6ta2          79 LYIIPGISLDTRFESRTRKEISKIEWHNLMDLPTFKK  115 (151)
T ss_dssp             EEEECCCCTTCCCC------EEEEEEEEGGGSTTCC-
T ss_pred             EEEEEEeccCCcccccCCCccceEEEEEHHHhhhhhh
Confidence            4444333222222 23457999999999999987643

>d2b06a1 d.113.1.1 (A:1-155) Hypothetical protein SP1235 (spr1115) {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutT-like
domain: Hypothetical protein SP1235 (spr1115)
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=99.83  E-value=7.2e-20  Score=146.00  Aligned_cols=124  Identities=12%  Similarity=0.166  Sum_probs=85.3

Q ss_pred             eEEEEEEEe-CCceEEEEEEecCCCCCCCceeCcceeccCCCCHHHHHHHHHHHHhCCCcceeEEEEEEeeeccccc-eE
Q 039665          124 VGVGAFVMN-NKRELLVVQENNGALKGTGVWKLPTGTIEEGEDICAAAVREVKEETGIDTEFVEVLAFRQSHRSFFR-KS  201 (275)
Q Consensus       124 v~v~~vv~~-~~~~vLLv~r~~~~~~~~~~w~lPgG~ve~gEs~~~aA~REl~EEtGl~~~~~~~l~~~~~~~~~~~-~~  201 (275)
                      +...++|++ +++++||++|..... ..+.|.||||++++|||+.+||+||++||||+.+....+++.......... ..
T Consensus         9 ~~~~~~i~~~~~~~lLl~~R~~~~~-~~~~w~~PGG~ve~gEs~~~aa~RE~~EEtGl~v~~~~~~~~~~~~~~~~~~~~   87 (155)
T d2b06a1           9 LTNICLIEDLETQRVVMQYRAPENN-RWSGYAFPGGHVENDEAFAESVIREIYEETGLTIQNPQLVGIKNWPLDTGGRYI   87 (155)
T ss_dssp             EEEEEEEEETTTTEEEEEEEC------CCEEECCCCBCCTTSCHHHHHHHHHHHHHSEEEESCEEEEEEEEECTTSCEEE
T ss_pred             EEEEEEEEECCCCEEEEEEECCCCC-CCCcEECceeEEcCCCCHHHHHHHHHHHhcCeeEeeeEEEEEEEeecCCCCeEE
Confidence            334455666 567899888875443 346799999999999999999999999999999998888887665543322 23


Q ss_pred             EEEEEEEEecCCccccCCccccceEEEEeHhhHhcCCCcccchHHHHHHHHHHh
Q 039665          202 DLFFVCMLRPRNFHIQKQDSEIAAAQWMQAEDYAAQPYVLKHQMFNYICQICLT  255 (275)
Q Consensus       202 ~~~f~~~~~~~~~~~~~~~~E~~~~~Wv~~eel~~~~~~~~~~~~~~~~~~~~~  255 (275)
                      .++|.|  ....+.  +...|..+++|++++++.++++...   ...+++.+..
T Consensus        88 ~~~~~~--~~~~~~--~~~~e~~~~~W~~~~el~~l~~~~~---~~~~~~~~~~  134 (155)
T d2b06a1          88 VICYKA--TEFSGT--LQSSEEGEVSWVQKDQIPNLNLAYD---MLPLMEMMEA  134 (155)
T ss_dssp             EEEEEE--CEEEEC--CCCBTTBEEEEEEGGGGGGSCBCTT---HHHHHHHHHC
T ss_pred             EEEEEE--EecCCc--cCCCchheEEEEEHHHhccCCCCch---hHHHHHHHhC
Confidence            334444  222233  3456788999999999999877655   3334444443

>d2o5fa1 d.113.1.2 (A:7-168) Hypothetical protein DR0079 {Deinococcus radiodurans str. R1 (Deinococcus radiodurans R1) [TaxId: 243230]}

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: IPP isomerase-like
domain: Hypothetical protein DR0079
species: Deinococcus radiodurans str. R1 (Deinococcus radiodurans R1) [TaxId: 243230]

Probab=99.82  E-value=3e-20  Score=149.43  Aligned_cols=111  Identities=16%  Similarity=0.203  Sum_probs=82.6

Q ss_pred             EEEEEEEeCCceEEEEEEecCCCCCCCceeCc-ceeccCCCCHHHHHHHHHHHHhCCCcceeEEEEEEeeeccccc--eE
Q 039665          125 GVGAFVMNNKRELLVVQENNGALKGTGVWKLP-TGTIEEGEDICAAAVREVKEETGIDTEFVEVLAFRQSHRSFFR--KS  201 (275)
Q Consensus       125 ~v~~vv~~~~~~vLLv~r~~~~~~~~~~w~lP-gG~ve~gEs~~~aA~REl~EEtGl~~~~~~~l~~~~~~~~~~~--~~  201 (275)
                      +|+++|+|++|++||.+|.......+|.|.+| ||++++||++.+||+||++||||+++.....+...........  ..
T Consensus        30 ~v~~~v~~~~g~~Ll~rR~~~k~~~pg~w~~~~GG~ve~gEs~~eaa~REl~EE~Gl~~~~~~~~~~~~~~~~~~~~~~~  109 (162)
T d2o5fa1          30 VVNAFLRNSQGQLWIPRRSPSKSLFPNALDVSVGGAVQSGETYEEAFRREAREELNVEIDALSWRPLASFSPFQTTLSSF  109 (162)
T ss_dssp             EEEEEEECTTSCEEEEEC-------CCSBCCSEEEECBTTCCHHHHHHHHHHHHHCCCGGGSEEEEEEEECTTTSSCSSE
T ss_pred             EEEEEEEcCCCCEEEEEeccCccccccccccccCCcccCCCChhhhhhhhhhheeCcceeeEEEEEEEEeccccccceEE
Confidence            58889999999999998876555678999887 9999999999999999999999999988777665554433333  33


Q ss_pred             EEEEEEEEecCCccccCCccccceEEEEeHhhHhcCC
Q 039665          202 DLFFVCMLRPRNFHIQKQDSEIAAAQWMQAEDYAAQP  238 (275)
Q Consensus       202 ~~~f~~~~~~~~~~~~~~~~E~~~~~Wv~~eel~~~~  238 (275)
                      ..+|.+  .. ...+.++++|+.+++|++++|+.++.
T Consensus       110 ~~~~~~--~~-~~~~~~~~~Ev~~~~W~~~eel~~~~  143 (162)
T d2o5fa1         110 MCVYEL--RS-DATPIFNPNDISGGEWLTPEHLLARI  143 (162)
T ss_dssp             EEEEEE--EC-SSCCCCCTTTCSEEEEECHHHHHHHH
T ss_pred             EEEEEE--ec-CCCccCChhHeeEEEEeeHHHHHHHH
Confidence            334443  32 34566778899999999999998763

>d2fvva1 d.113.1.1 (A:8-142) Diphosphoinositol polyphosphate phosphohydrolase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutT-like
domain: Diphosphoinositol polyphosphate phosphohydrolase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.82  E-value=3.3e-20  Score=144.48  Aligned_cols=112  Identities=20%  Similarity=0.311  Sum_probs=79.8

Q ss_pred             eeEEEEEEEe--CCceEEEEEEecCCCCCCCceeCcceeccCCCCHHHHHHHHHHHHhCCCcceeEEEEEEeeeccccce
Q 039665          123 RVGVGAFVMN--NKRELLVVQENNGALKGTGVWKLPTGTIEEGEDICAAAVREVKEETGIDTEFVEVLAFRQSHRSFFRK  200 (275)
Q Consensus       123 ~v~v~~vv~~--~~~~vLLv~r~~~~~~~~~~w~lPgG~ve~gEs~~~aA~REl~EEtGl~~~~~~~l~~~~~~~~~~~~  200 (275)
                      +..+++++++  .++.+||+++++    .++.|.||||++++|||+.+||+||++||||+.+....+++...........
T Consensus        11 r~~a~~vv~~~~~~~~~lL~~~~~----~~~~W~~PgG~ve~gEs~~~aa~RE~~EEtGl~~~~~~~~~~~~~~~~~~~~   86 (135)
T d2fvva1          11 KKRAACLCFRSESEEEVLLVSSSR----HPDRWIVPGGGMEPEEEPSVAAVREVCEEAGVKGTLGRLVGIFENQERKHRT   86 (135)
T ss_dssp             EEEEEEEEESSTTCCEEEEEECSS----CTTSEECSEEECCTTCCHHHHHHHHHHHHHCEEEEEEEEEEEEEETTTTEEE
T ss_pred             ceEEEEEEEEecCCCEEEEEEEeC----CCCcEECCccccCCCCCHHHHHHHHHHHHhCCcceeeEEEEEEeeccCCccE
Confidence            3446677776  445677777764    4588999999999999999999999999999999888888766554443222


Q ss_pred             EEEEEEEEEecCCccccCCccccceEEEEeHhhHhcCCCc
Q 039665          201 SDLFFVCMLRPRNFHIQKQDSEIAAAQWMQAEDYAAQPYV  240 (275)
Q Consensus       201 ~~~~f~~~~~~~~~~~~~~~~E~~~~~Wv~~eel~~~~~~  240 (275)
                        ++|.+.............+|+.+++|++++|+.++...
T Consensus        87 --~~~~~~~~~~~~~~~~~~~e~~~~~W~~~~e~~~~l~~  124 (135)
T d2fvva1          87 --YVYVLIVTEVLEDWEDSVNIGRKREWFKIEDAIKVLQY  124 (135)
T ss_dssp             --EEEEEEEEEECSSCHHHHHHCCCEEEEEHHHHHHHHTT
T ss_pred             --EEEEEEEEeecCCCCCCCCceeEEEEEEHHHHHHHHhc
Confidence              22333222222223334567889999999999987543

>d1ktga_ d.113.1.1 (A:) Diadenosine tetraphosphate hydrolase (Ap4A hydrolase) {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutT-like
domain: Diadenosine tetraphosphate hydrolase (Ap4A hydrolase)
species: Caenorhabditis elegans [TaxId: 6239]

Probab=99.82  E-value=9.9e-20  Score=141.54  Aligned_cols=125  Identities=22%  Similarity=0.270  Sum_probs=84.4

Q ss_pred             EEEEEEEe---CCceEEEEEEecCCCCCCCceeCcceeccCCCCHHHHHHHHHHHHhCCCcceeEEEEEEeeec---cc-
Q 039665          125 GVGAFVMN---NKRELLVVQENNGALKGTGVWKLPTGTIEEGEDICAAAVREVKEETGIDTEFVEVLAFRQSHR---SF-  197 (275)
Q Consensus       125 ~v~~vv~~---~~~~vLLv~r~~~~~~~~~~w~lPgG~ve~gEs~~~aA~REl~EEtGl~~~~~~~l~~~~~~~---~~-  197 (275)
                      +++++|++   ++.++||++|.+    .+|.|.+|||++|+||++.+||+||++||||+++.....+.......   .. 
T Consensus         4 aag~vv~~~~~~~~~~Ll~~r~~----~~g~W~~PgG~ie~gE~~~~aa~RE~~EEtGl~~~~~~~~~~~~~~~~~~~~~   79 (137)
T d1ktga_           4 AAGLVIYRKLAGKIEFLLLQASY----PPHHWTPPKGHVDPGEDEWQAAIRETKEEANITKEQLTIHEDCHETLFYEAKG   79 (137)
T ss_dssp             EEEEEEEEEETTEEEEEEEEESS----TTCCEESSEEECCTTCCHHHHHHHHHHHHHCCCGGGEEEEEEEEEEEEEEETT
T ss_pred             EEEEEEEEEcCCCEEEEEEEEcC----CCCcEeCcccccccCCCHHHHHHHHHHHHhCCcceeeeeeeeeeeeeecCCCc
Confidence            46667765   234789998874    35899999999999999999999999999999998777664332221   11 


Q ss_pred             cceEEEEEEEEEecCCccccCCccccceEEEEeHhhHhcCCCcccchHHHHHHHHHHhhcc
Q 039665          198 FRKSDLFFVCMLRPRNFHIQKQDSEIAAAQWMQAEDYAAQPYVLKHQMFNYICQICLTKSE  258 (275)
Q Consensus       198 ~~~~~~~f~~~~~~~~~~~~~~~~E~~~~~Wv~~eel~~~~~~~~~~~~~~~~~~~~~~~~  258 (275)
                      ......+|++.... ...+. ...|+.+++|++++++.++...   ...+.+++.+.++++
T Consensus        80 ~~~~~~~~~~~~~~-~~~~~-~~~E~~~~~W~~~~e~~~~~~~---~~~~~~l~~~~~~L~  135 (137)
T d1ktga_          80 KPKSVKYWLAKLNN-PDDVQ-LSHEHQNWKWCELEDAIKIADY---AEMGSLLRKFSAFLA  135 (137)
T ss_dssp             EEEEEEEEEEEECS-CCCCC-CCTTEEEEEEECHHHHHHHHCC---HHHHHHHHHHHHHHH
T ss_pred             ceEEEEEEEEEecC-CCCcC-CCcceEEEEEEEHHHHHHhcCC---HHHHHHHHHHHHHhc
Confidence            12233344443332 22333 3468999999999999876432   234556666665553

>d1nqza_ d.113.1.1 (A:) Coenzyme A pyrophosphatase {Deinococcus radiodurans [TaxId: 1299]}

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutT-like
domain: Coenzyme A pyrophosphatase
species: Deinococcus radiodurans [TaxId: 1299]

Probab=99.81  E-value=5.5e-20  Score=151.31  Aligned_cols=118  Identities=19%  Similarity=0.215  Sum_probs=89.7

Q ss_pred             eeEEEEEEEe-CCceEEEEEEecCCCCCCCceeCcceeccCCCCHHHHHHHHHHHHhCCCcceeEEEEEEeeeccccceE
Q 039665          123 RVGVGAFVMN-NKRELLVVQENNGALKGTGVWKLPTGTIEEGEDICAAAVREVKEETGIDTEFVEVLAFRQSHRSFFRKS  201 (275)
Q Consensus       123 ~v~v~~vv~~-~~~~vLLv~r~~~~~~~~~~w~lPgG~ve~gEs~~~aA~REl~EEtGl~~~~~~~l~~~~~~~~~~~~~  201 (275)
                      +-+|.+++++ .+.+|||++|..+....+|.|.||||++|+||++.+||+||++||||+..+.+++++.........+..
T Consensus        32 ~aaVlv~~~~~~~~~vll~kR~~~l~~h~G~~~fPGG~~e~~E~~~~aAlRE~~EE~Gl~~~~~~~lg~l~~~~~~~~~~  111 (187)
T d1nqza_          32 RAAVLVALTREADPRVLLTVRSSELPTHKGQIAFPGGSLDAGETPTQAALREAQEEVALDPAAVTLLGELDDVFTPVGFH  111 (187)
T ss_dssp             EEEEEEEEESSSSCBBCEEEEC------CCCEECSEEECCTTCCHHHHHHHHHHHHHCCCGGGCEEEEECCCEEETTTEE
T ss_pred             ccEEEEEEEECCCCEEEEEEcCCCCCCCCCeEeCCccccccCCchhHHHHHHHHHhhccccceeEEeecccceeeccccE
Confidence            3344444443 456799999987644468999999999999999999999999999999999999999877666666666


Q ss_pred             EEEEEEEEecCCccccCCccccceEEEEeHhhHhcCCCc
Q 039665          202 DLFFVCMLRPRNFHIQKQDSEIAAAQWMQAEDYAAQPYV  240 (275)
Q Consensus       202 ~~~f~~~~~~~~~~~~~~~~E~~~~~Wv~~eel~~~~~~  240 (275)
                      .+.|++.+.........++.|+.++.|++++++...+..
T Consensus       112 V~p~v~~l~~~~~~~~~~~~EV~~v~~vpl~~L~~~~~~  150 (187)
T d1nqza_         112 VTPVLGRIAPEALDTLRVTPEVAQIITPTLAELRAVPLV  150 (187)
T ss_dssp             EEEEEEEECGGGGGGCCCCTTEEEEECCBHHHHHHSCCE
T ss_pred             EEEEEEEECCccccccccCCcceEEEeccHHHHhcCccc
Confidence            666777776554444456789999999999999886543

>d1k2ea_ d.113.1.1 (A:) Hypothetical protein PAE3301 {Archaeon Pyrobaculum aerophilum [TaxId: 13773]}

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutT-like
domain: Hypothetical protein PAE3301
species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]

Probab=99.81  E-value=2e-20  Score=147.88  Aligned_cols=111  Identities=19%  Similarity=0.271  Sum_probs=73.4

Q ss_pred             EEEEEEEeCCceEEEEEEecCCCCCCCceeCcceeccCCCCHHHHHHHHHHHHhCCCcceeEEEEEEeeeccc---cceE
Q 039665          125 GVGAFVMNNKRELLVVQENNGALKGTGVWKLPTGTIEEGEDICAAAVREVKEETGIDTEFVEVLAFRQSHRSF---FRKS  201 (275)
Q Consensus       125 ~v~~vv~~~~~~vLLv~r~~~~~~~~~~w~lPgG~ve~gEs~~~aA~REl~EEtGl~~~~~~~l~~~~~~~~~---~~~~  201 (275)
                      .++++|++ +++|||++|.     ..|.|.||||++|+||++.+||+||++||||+++.....+.........   ....
T Consensus         3 ~a~~vi~~-d~kvLl~~r~-----~~~~w~lPgG~ie~gE~~~~aa~RE~~EEtGl~~~~~~~~~~~~~~~~~~~~~~~~   76 (152)
T d1k2ea_           3 VTSGVLVE-NGKVLLVKHK-----RLGVYIYPGGHVEHNETPIEAVKREFEEETGIVVEPIGFTYGIIDENAVERPMPLV   76 (152)
T ss_dssp             EEEEECEE-TTEEEEEECT-----TTCSEECSEEECCTTCCHHHHHHHHHHHHHSEEEEECCCCCCCBSSSEEECCCCSE
T ss_pred             EEEEEEEE-CCEEEEEEEc-----CCCeEECCeeEEeCCccHHHHHHHHHHHHHCCceeeeEEEEEEeccccccCcceEE
Confidence            35566666 5799999986     4578999999999999999999999999999998766544322221111   1111


Q ss_pred             EEEEEEEEecCCc--------cccCCccccceEEEEeHhhHhcCCCccc
Q 039665          202 DLFFVCMLRPRNF--------HIQKQDSEIAAAQWMQAEDYAAQPYVLK  242 (275)
Q Consensus       202 ~~~f~~~~~~~~~--------~~~~~~~E~~~~~Wv~~eel~~~~~~~~  242 (275)
                      ...+.+.. ....        ....+.+|+.+++|++++++.++.....
T Consensus        77 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~E~~~~~W~~~~el~~~~~~~~  124 (152)
T d1k2ea_          77 ILEEVVKY-PEETHIHFDLIYLVKRVGGDLKNGEWIDVREIDRIETFPN  124 (152)
T ss_dssp             EEEEEEEC-SSCEEEEEEEEEEEEEEEECCCSCEEEEGGGGGGSCBSTT
T ss_pred             EEEEEEec-CCCceEEEEEeEeeecCCCCcceEEEeEHHHHhhCCCCHH
Confidence            11111110 0000        1123467889999999999999876543

>d2azwa1 d.113.1.1 (A:2-148) Hypothetical protein EF1141 {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutT-like
domain: Hypothetical protein EF1141
species: Enterococcus faecalis [TaxId: 1351]

Probab=99.80  E-value=2.5e-19  Score=141.11  Aligned_cols=125  Identities=20%  Similarity=0.200  Sum_probs=84.9

Q ss_pred             cceeEEEEEEEeCCceEEEEEEecCCCCCCCceeCcceeccCCCCHHHHHHHHHHHHhCCCcceeEEEEEEeeeccc--c
Q 039665          121 SHRVGVGAFVMNNKRELLVVQENNGALKGTGVWKLPTGTIEEGEDICAAAVREVKEETGIDTEFVEVLAFRQSHRSF--F  198 (275)
Q Consensus       121 ~~~v~v~~vv~~~~~~vLLv~r~~~~~~~~~~w~lPgG~ve~gEs~~~aA~REl~EEtGl~~~~~~~l~~~~~~~~~--~  198 (275)
                      ..+.+++++|++.++++||+.+.     ..+.|.||||++|+||++.+||+||++||||+++.....++........  .
T Consensus        15 ~~r~~~~~vi~~~~~~~lll~~~-----~~~~w~lPgG~ie~gEs~~~aa~RE~~EEtGl~~~~~~~~~~~~~~~~~~~~   89 (147)
T d2azwa1          15 QTRYAAYIIVSKPENNTMVLVQA-----PNGAYFLPGGEIEGTETKEEAIHREVLEELGISVEIGCYLGEADEYFYSNHR   89 (147)
T ss_dssp             EECCEEEEECEEGGGTEEEEEEC-----TTSCEECSEEECCTTCCHHHHHHHHHHHHHSEEEEEEEEEEEEEEEEEETTT
T ss_pred             CCCCeEEEEEEECCCCEEEEEEc-----CCCeEECcEeEeCCCCCHHHHHHHHHHhhhceeeeeeeEEEEEEEEeeeccC
Confidence            34678889999977666666554     2468999999999999999999999999999999888777665433221  1


Q ss_pred             ----ceEEEEEEEEEecCCccccCCccccceEEEEeHhhHhcCCCcccchHHHHHHHHHHhh
Q 039665          199 ----RKSDLFFVCMLRPRNFHIQKQDSEIAAAQWMQAEDYAAQPYVLKHQMFNYICQICLTK  256 (275)
Q Consensus       199 ----~~~~~~f~~~~~~~~~~~~~~~~E~~~~~Wv~~eel~~~~~~~~~~~~~~~~~~~~~~  256 (275)
                          ....++|.+...  . ......+|+.+++|++++++.++....   ..+.+++.+++.
T Consensus        90 ~~~~~~~~~~~~~~~~--~-~~~~~~~e~~~~~W~~~~e~~~~l~~~---~~r~~l~~~la~  145 (147)
T d2azwa1          90 QTAYYNPGYFYVANTW--R-QLSEPLERTNTLHWVAPEEAVRLLKRG---SHRWAVEKWLAA  145 (147)
T ss_dssp             TEEEEEEEEEEEEEEE--E-ECSSCC-CCSEEEEECHHHHHHHBSCH---HHHHHHHHHHHC
T ss_pred             CceEEEEEEEEEEEec--c-ccCCCCccceEEEEEEHHHHHHHcCCh---hHHHHHHHHHhc
Confidence                122234444322  1 222345688899999999998765433   244555555543

>d2fmla2 d.113.1.6 (A:3-204) Hypothetical protein EF2700, N-terminal domain {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: BT0354 N-terminal domain-like
domain: Hypothetical protein EF2700, N-terminal domain
species: Enterococcus faecalis [TaxId: 1351]

Probab=99.80  E-value=3.6e-19  Score=148.10  Aligned_cols=118  Identities=17%  Similarity=0.275  Sum_probs=82.5

Q ss_pred             CCCCCCCcceeEEEEEEEe--CC---ceEEEEEEecCCCCCCCceeCcceeccCCCCHHHHHHHHHHHHhCCCcceeEE-
Q 039665          114 DVLPANASHRVGVGAFVMN--NK---RELLVVQENNGALKGTGVWKLPTGTIEEGEDICAAAVREVKEETGIDTEFVEV-  187 (275)
Q Consensus       114 ~~~p~~~~~~v~v~~vv~~--~~---~~vLLv~r~~~~~~~~~~w~lPgG~ve~gEs~~~aA~REl~EEtGl~~~~~~~-  187 (275)
                      +.++.++++.++|.++|+.  .+   .+|||+||.+.+  +.|.|.||||++++||++.+||+||++||||+.+....+ 
T Consensus        28 ~~~~~y~~P~v~vd~vi~~~~~~~~~l~VLLv~R~~~p--~~g~W~lPGG~ve~gEs~~eaa~REl~EEtGl~~~~~~l~  105 (202)
T d2fmla2          28 QELPEYEKPSLTVDMVLLCYNKEADQLKVLLIQRKGHP--FRNSWALPGGFVNRNESTEDSVLRETKEETGVVISQENIE  105 (202)
T ss_dssp             SCCCCCCCCEEEEEEEEEEEETTTTEEEEEEEEECSSS--STTCEECCEEECCTTSCHHHHHHHHHHHHHCCCCCGGGEE
T ss_pred             ccCCCCCCCccEEEEEEEEEecCCCeeEEEEEEecCCC--CCCcEECCEEeecCCCCHHHHhhhhhHhhcCeeeecceee
Confidence            3456666778888777764  32   279999998654  568999999999999999999999999999998765433 


Q ss_pred             -EEEEeeecc-ccc-eEEEEEEEEEecCCccccCCccccceEEEEeHhhHhc
Q 039665          188 -LAFRQSHRS-FFR-KSDLFFVCMLRPRNFHIQKQDSEIAAAQWMQAEDYAA  236 (275)
Q Consensus       188 -l~~~~~~~~-~~~-~~~~~f~~~~~~~~~~~~~~~~E~~~~~Wv~~eel~~  236 (275)
                       +..+..... ..+ ...++|++...  . ......+|+.+++|++++++..
T Consensus       106 ~~~~~~~~~r~~~~~~i~~~~~~~~~--~-~~~~~~~e~~~~~Wf~ld~l~~  154 (202)
T d2fmla2         106 QLHSFSRPDRDPRGWVVTVSYLAFIG--E-EPLIAGDDAKEVHWFNLERHGQ  154 (202)
T ss_dssp             EEEEECCTTSSTTSSEEEEEEEEECC--C-CCCCCCTTEEEEEEEEEEEETT
T ss_pred             eeeecccCCccccceEEEEEEEEEeC--C-CCcCCCcceeeEEEEeHHHCcc
Confidence             433322211 112 33345555332  2 2223567899999999999865

>d1xsba_ d.113.1.1 (A:) Diadenosine tetraphosphate hydrolase (Ap4A hydrolase) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutT-like
domain: Diadenosine tetraphosphate hydrolase (Ap4A hydrolase)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.79  E-value=9.4e-19  Score=138.87  Aligned_cols=128  Identities=21%  Similarity=0.310  Sum_probs=91.4

Q ss_pred             eEEEEEEE---------eCCceEEEEEEecCCCCCCCceeCcceeccCCCCHHHHHHHHHHHHhCCCcceeEEEEEE---
Q 039665          124 VGVGAFVM---------NNKRELLVVQENNGALKGTGVWKLPTGTIEEGEDICAAAVREVKEETGIDTEFVEVLAFR---  191 (275)
Q Consensus       124 v~v~~vv~---------~~~~~vLLv~r~~~~~~~~~~w~lPgG~ve~gEs~~~aA~REl~EEtGl~~~~~~~l~~~---  191 (275)
                      .++|++++         +++.++||+|+..    +.+.|.+|||++++||++.+||+||++||||+.+.....+..+   
T Consensus         9 ~~~g~i~f~~~~~~~~~~~~~~~LL~~~~~----~~~~W~lPgG~ie~gEt~~~aa~REl~EEtG~~~~~~~~~~~~~~~   84 (153)
T d1xsba_           9 RACGLIIFRRCLIPKVDNNAIEFLLLQASD----GIHHWTPPKGHVEPGEDDLETALRATQEEAGIEAGQLTIIEGFKRE   84 (153)
T ss_dssp             EEEEEEEEEECSSCSSSSTTEEEEEEEESS----TTCCEECCEEECCSSSCHHHHHHHHHHHTTSCCTTTEEECSSCCEE
T ss_pred             heeEEEEEeccccccccCCCCEEEEEEecC----CCCcEECCeeecCCCCCHHHHHHHHHHHHhCCccceeeeeccceee
Confidence            45788887         4678999999875    3467999999999999999999999999999998877665422   


Q ss_pred             -eeeccccceEEEEEEEEEecCCccccCCccccceEEEEeHhhHhcCCCcccchHHHHHHHHHHhhccC
Q 039665          192 -QSHRSFFRKSDLFFVCMLRPRNFHIQKQDSEIAAAQWMQAEDYAAQPYVLKHQMFNYICQICLTKSEK  259 (275)
Q Consensus       192 -~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~E~~~~~Wv~~eel~~~~~~~~~~~~~~~~~~~~~~~~~  259 (275)
                       ............+|++........+. .++|+.+++|++++|+.++....   ..+.++..+.+++.+
T Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~E~~~~~W~~~~e~~~~~~~~---~~~~iL~~~~~~L~~  149 (153)
T d1xsba_          85 LNYVARNKPKTVIYWLAEVKDYDVEIR-LSHEHQAYRWLGLEEACQLAQFK---EMKAALQEGHQFLCS  149 (153)
T ss_dssp             EEEESSSCEEEEEEEEEEESCTTCCCC-CCTTEEEEEEECHHHHHHHTCSH---HHHHHHHHHHHHHTT
T ss_pred             ecccccCceeEEEEEEEEEeecccccC-CCcceeEEEEEEHHHHHHhcCCH---HHHHHHHHHHHHHhc
Confidence             11122222344555555554444443 35789999999999999876533   356666666666543

>d1g0sa_ d.113.1.1 (A:) ADP-ribose pyrophosphatase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutT-like
domain: ADP-ribose pyrophosphatase
species: Escherichia coli [TaxId: 562]

Probab=99.78  E-value=5.9e-19  Score=147.38  Aligned_cols=117  Identities=15%  Similarity=0.071  Sum_probs=92.3

Q ss_pred             eEEEEEEEeC-CceEEEEEEecCCCC----CCCceeCcceeccCCCCHHHHHHHHHHHHhCCCcceeEEEEEEeeecccc
Q 039665          124 VGVGAFVMNN-KRELLVVQENNGALK----GTGVWKLPTGTIEEGEDICAAAVREVKEETGIDTEFVEVLAFRQSHRSFF  198 (275)
Q Consensus       124 v~v~~vv~~~-~~~vLLv~r~~~~~~----~~~~w~lPgG~ve~gEs~~~aA~REl~EEtGl~~~~~~~l~~~~~~~~~~  198 (275)
                      -+|+++++++ +++++|++|+|.+..    ....|++|+|.+|+||++++||+|||+||||+.+..+..++.++..++..
T Consensus        58 ~~v~vl~~~~~~~~vlLvrQ~R~~~~~~~~~~~~lElPAG~id~gE~p~~aA~REL~EEtG~~~~~l~~l~~~~~spg~~  137 (209)
T d1g0sa_          58 HAAVLLPFDPVRDEVVLIEQIRIAAYDTSETPWLLEMVAGMIEEGESVEDVARREAIEEAGLIVKRTKPVLSFLASPGGT  137 (209)
T ss_dssp             CEEEEEEEETTTTEEEEEEEECGGGGGGSSCSEEEECEEEECCTTCCHHHHHHHHHHHHHCCCCCCEEEEEEEESCTTTB
T ss_pred             CEEEEEEEEecCCeEEEEEEEeccccccCCCceEEeeceeecCCCcCHHHHHHHHHHhhhcccccceeeccccccCCccc
Confidence            4677888875 478999999875531    23479999999999999999999999999999999999999998888888


Q ss_pred             ceEEEEEEEEEecCCc-c--ccCCccccceEEEEeHhhHhcCCCc
Q 039665          199 RKSDLFFVCMLRPRNF-H--IQKQDSEIAAAQWMQAEDYAAQPYV  240 (275)
Q Consensus       199 ~~~~~~f~~~~~~~~~-~--~~~~~~E~~~~~Wv~~eel~~~~~~  240 (275)
                      +...++|+|....... .  ...+++|..++.|++++|+.++...
T Consensus       138 ~e~~~~f~a~~~~~~~~~~~~~~de~E~iev~~v~~~e~~~~i~~  182 (209)
T d1g0sa_         138 SERSSIMVGEVDATTASGIHGLADENEDIRVHVVSREQAYQWVEE  182 (209)
T ss_dssp             CCEEEEEEEECCGGGCC--------CCSCEEEEEEHHHHHHHHHT
T ss_pred             CCceEEEEEEEecccccCCCCCCCCCceeEEEEEeHHHHHHHHHc
Confidence            8889999997543221 1  1235567789999999999887544

>d1rrqa2 d.113.1.3 (A:234-360) Adenine glycosylase MutY, C-terminal domain {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutY C-terminal domain-like
domain: Adenine glycosylase MutY, C-terminal domain
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=99.74  E-value=4.8e-18  Score=130.96  Aligned_cols=118  Identities=12%  Similarity=0.161  Sum_probs=87.9

Q ss_pred             EEEEEEeCCceEEEEEEecCCCCCCCceeCcceeccCCCCHHHHHHHHHHHHhCCCcceeEEEEEEeeeccccceEEEEE
Q 039665          126 VGAFVMNNKRELLVVQENNGALKGTGVWKLPTGTIEEGEDICAAAVREVKEETGIDTEFVEVLAFRQSHRSFFRKSDLFF  205 (275)
Q Consensus       126 v~~vv~~~~~~vLLv~r~~~~~~~~~~w~lPgG~ve~gEs~~~aA~REl~EEtGl~~~~~~~l~~~~~~~~~~~~~~~~f  205 (275)
                      ++++|+|++|++||.||...+. .+|+|+||||.++.+|+ .+++.||++||+|+++.....++.+.+.++++.....+|
T Consensus         7 ~~~vi~~~~g~iLl~kR~~~~~-~~GlWefP~g~~e~~~~-~e~l~rel~ee~gi~v~~~~~l~~~~H~fsh~~~~~~~~   84 (127)
T d1rrqa2           7 AVAVLADDEGRVLIRKRDSTGL-LANLWEFPSCETDGADG-KEKLEQMVGEQYGLQVELTEPIVSFEHAFSHLVWQLTVF   84 (127)
T ss_dssp             EEEEEEESSSEEEEEECCSSST-TTTCEECCEEECTTTCC-HHHHHHTTC----CEEEECSCCEEEEEECSSEEEEEEEE
T ss_pred             EEEEEEECCCEEEEEECCCCCC-CCCceecccccccCCCC-HHHHHHHhhhhcceEEEeccccccceEecCCeEEEEEEE
Confidence            4456678899999999876554 68999999999997777 789999999999999988888888888888777767777


Q ss_pred             EEEEecCCccccCCccccceEEEEeHhhHhcCCCcccchHHHHHHHHHHh
Q 039665          206 VCMLRPRNFHIQKQDSEIAAAQWMQAEDYAAQPYVLKHQMFNYICQICLT  255 (275)
Q Consensus       206 ~~~~~~~~~~~~~~~~E~~~~~Wv~~eel~~~~~~~~~~~~~~~~~~~~~  255 (275)
                      .|.....       ..+..+++|++++++.+++++..   .+++++.+.+
T Consensus        85 ~~~~~~~-------~~~~~~~~Wv~~~el~~~~~p~~---~~Ki~~~~~~  124 (127)
T d1rrqa2          85 PGRLVHG-------GPVEEPYRLAPEDELKAYAFPVS---HQRVWREYKE  124 (127)
T ss_dssp             EEEEECC-------SCCCTTEEEEEGGGGGGSCCCHH---HHHHHHHHHH
T ss_pred             EEEECCC-------CccccceEEeeHHHHhHCCCChH---HHHHHHHHHH
Confidence            7755422       12335689999999999998654   4455555443

>d1viua_ d.113.1.1 (A:) ADP-ribose pyrophosphatase homologue YffH {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutT-like
domain: ADP-ribose pyrophosphatase homologue YffH
species: Escherichia coli [TaxId: 562]

Probab=99.73  E-value=1.1e-17  Score=137.55  Aligned_cols=116  Identities=13%  Similarity=0.061  Sum_probs=89.1

Q ss_pred             eEEEEEEEe-CCceEEEEEEecCCC-----CCCCceeCcceeccCCCCHHHHHHHHHHHHhCCCcceeEEEEEEeeeccc
Q 039665          124 VGVGAFVMN-NKRELLVVQENNGAL-----KGTGVWKLPTGTIEEGEDICAAAVREVKEETGIDTEFVEVLAFRQSHRSF  197 (275)
Q Consensus       124 v~v~~vv~~-~~~~vLLv~r~~~~~-----~~~~~w~lPgG~ve~gEs~~~aA~REl~EEtGl~~~~~~~l~~~~~~~~~  197 (275)
                      -+|++++++ .+++|+|++|+|.+.     .....|++|||.+| ||++.+||+||++||||+.+..+..++.++..++.
T Consensus        44 ~aV~Vl~~~~~~~~vllvrQ~R~~v~~~~~~~~~~~e~paG~~d-~e~p~~aA~REL~EEtG~~~~~~~~lg~~~~spG~  122 (189)
T d1viua_          44 NGATILLYNTKKKTVVLIRQFRVATWVNGNESGQLIESCAGLLD-NDEPEVCIRKEAIEETGYEVGEVRKLFELYMSPGG  122 (189)
T ss_dssp             CEEEEEEEETTTTEEEEEEEECHHHHTTTCSSCEEEECEEEECT-TSCHHHHHHHHHHHHHSCCCCCCEEEEEEESCTTT
T ss_pred             CEEEEEEEEcCCCEEEEEEeeccceeeccCCCcceecCcEEecC-CCCHHHHHHHHHHHhhCCcceEEEEcceeecCccc
Confidence            368888888 568999999987432     13457899999998 66789999999999999999999999998888888


Q ss_pred             cceEEEEEEEEEecCC--ccccCCccccceEEEEeHhhHhcCCCc
Q 039665          198 FRKSDLFFVCMLRPRN--FHIQKQDSEIAAAQWMQAEDYAAQPYV  240 (275)
Q Consensus       198 ~~~~~~~f~~~~~~~~--~~~~~~~~E~~~~~Wv~~eel~~~~~~  240 (275)
                      .+...++|+|......  .....+++|..++.|++++|+.++...
T Consensus       123 ~~e~~~~f~a~~~~~~~~~~~~~~e~E~i~v~~~~~~e~~~~i~~  167 (189)
T d1viua_         123 VTELIHFFIAEYSDNQRANAGGGVEDEDIEVLELPFSQALEMIKT  167 (189)
T ss_dssp             BCCEEEEEEEECCTTCC---------CCEEEEEEEHHHHHHHHHH
T ss_pred             cCceEEEEEEEECCcccccCCCCCCCccEEEEEEEHHHHHHHHHc
Confidence            8888899998654322  122235678889999999999987544

>d1x51a1 d.113.1.3 (A:8-149) A/G-specific adenine DNA glycosylase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutY C-terminal domain-like
domain: A/G-specific adenine DNA glycosylase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.52  E-value=7.3e-14  Score=108.83  Aligned_cols=125  Identities=14%  Similarity=0.216  Sum_probs=90.2

Q ss_pred             ceeEEEEEEEe---CCceEEEEEEecCCCCCCCceeCcceeccCCCCHHHHHHHHHHHHhC--CCcceeEEEEEEeeecc
Q 039665          122 HRVGVGAFVMN---NKRELLVVQENNGALKGTGVWKLPTGTIEEGEDICAAAVREVKEETG--IDTEFVEVLAFRQSHRS  196 (275)
Q Consensus       122 ~~v~v~~vv~~---~~~~vLLv~r~~~~~~~~~~w~lPgG~ve~gEs~~~aA~REl~EEtG--l~~~~~~~l~~~~~~~~  196 (275)
                      .+..+.+++.+   .+++|||.||...+. .+|+|+||+|.++.||+..++|.||..+|.+  +.+.....++.+.+.++
T Consensus        11 ~~~~~~~vv~~~~~~~~~iLl~kR~~~g~-l~GlWefP~~~~~~~e~~~~~~~~~~~~e~~~~~~~~~~~~~~~v~H~fs   89 (142)
T d1x51a1          11 EESSATCVLEQPGALGAQILLVQRPNSGL-LAGLWEFPSVTWEPSEQLQRKALLQELQRWAGPLPATHLRHLGEVVHTFS   89 (142)
T ss_dssp             EEEEEEEEEEEECSSSEEEEEEECCCCST-TCSCEECCEEECCSSHHHHHHHHHHHHHHHSCCCCSTTCEECCCBCCBCS
T ss_pred             EEEEEEEEEEecCCCCCEEEEEECCCCCC-CCcceeeeEeeccCCcchhHHHHHHHHHHhccCcceeeeeeeccceeccC
Confidence            34445555555   368999999976654 6899999999999999999888877666655  34555667777777777


Q ss_pred             ccceEEEEEEEEEecCCccccCCccccceEEEEeHhhHhcCCCcccchHHHHHHHHHH
Q 039665          197 FFRKSDLFFVCMLRPRNFHIQKQDSEIAAAQWMQAEDYAAQPYVLKHQMFNYICQICL  254 (275)
Q Consensus       197 ~~~~~~~~f~~~~~~~~~~~~~~~~E~~~~~Wv~~eel~~~~~~~~~~~~~~~~~~~~  254 (275)
                      ++....++|.|.+.  ...+  ...+..+++|++++++.+++++..   ++++++.+.
T Consensus        90 H~~~~~~v~~~~~~--~~~~--~~~~~~~~~W~~~~el~~~~lp~~---~~Kil~~~~  140 (142)
T d1x51a1          90 HIKLTYQVYGLALE--GQTP--VTTVPPGARWLTQEEFHTAAVSTA---MKKVFRVYQ  140 (142)
T ss_dssp             SCEEEEEEEEEECS--SCCC--CCCCCTTEEEEEHHHHHHSCCCHH---HHHHHHHHH
T ss_pred             CcceEEEEEEEEEe--CCCc--ccccCccCEEeeHHHccccCCCHH---HHHHHHHHh
Confidence            77777777777554  2222  235667899999999999987654   556665543

>d1q33a_ d.113.1.1 (A:) NUDT9 (mitochondrial ADP-ribose pyrophosphatase) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutT-like
domain: NUDT9 (mitochondrial ADP-ribose pyrophosphatase)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.49  E-value=1.3e-13  Score=120.07  Aligned_cols=113  Identities=14%  Similarity=0.227  Sum_probs=71.6

Q ss_pred             eEEEEEEecCCCCCCCceeCcceeccCCCCHHHHHHHHHHHHhCCCcceeE---------------------EEEEEeee
Q 039665          136 ELLVVQENNGALKGTGVWKLPTGTIEEGEDICAAAVREVKEETGIDTEFVE---------------------VLAFRQSH  194 (275)
Q Consensus       136 ~vLLv~r~~~~~~~~~~w~lPgG~ve~gEs~~~aA~REl~EEtGl~~~~~~---------------------~l~~~~~~  194 (275)
                      +|||++|+     ..+.|.||||++|+||++.+||+||+.||||+.+....                     ..+.....
T Consensus       140 qvLlIkR~-----d~g~WaLPGG~Vd~GEs~~~Aa~REl~EETGl~~~~~~~~~~~~~~~l~~l~~~~~~~~y~gyvddp  214 (292)
T d1q33a_         140 QFVAIKRK-----DCGEWAIPGGMVDPGEKISATLKREFGEEALNSLQKTSAEKREIEEKLHKLFSQDHLVIYKGYVDDP  214 (292)
T ss_dssp             EEEEEECT-----TTCSEECCCEECCTTCCHHHHHHHHHHHHHSCGGGSCSSHHHHHHHHHHHHTTTSEEEEEEEECCCT
T ss_pred             EEEEEEec-----CCCcEeCCcccCCCCCCHHHHHHHHHHHHhCcccccccccccccccceeeecccccccccccccccc
Confidence            58999987     45789999999999999999999999999999875421                     11222111


Q ss_pred             ccccc--eEEEEEEEEEecCC--cccc-CCccccceEEEEeHhhHhcCCCcccchHHHHHHHHHHhhcc
Q 039665          195 RSFFR--KSDLFFVCMLRPRN--FHIQ-KQDSEIAAAQWMQAEDYAAQPYVLKHQMFNYICQICLTKSE  258 (275)
Q Consensus       195 ~~~~~--~~~~~f~~~~~~~~--~~~~-~~~~E~~~~~Wv~~eel~~~~~~~~~~~~~~~~~~~~~~~~  258 (275)
                      ....+  ....+|.+......  .... ...+|..+++|++++++..+...+     ..+++.+.++++
T Consensus       215 rntd~aw~etva~~~h~~~~~~~~~~~l~~~dEa~~v~W~~vde~~~L~~~H-----~~il~~aa~~~~  278 (292)
T d1q33a_         215 RNTDNAWMETEAVNYHDETGEIMDNLMLEAGDDAGKVKWVDINDKLKLYASH-----SQFIKLVAEKRD  278 (292)
T ss_dssp             TCCSSEEEEEEEEEEEESSSTTTTTCCCCCCTTCSEEEEEECCTTCCCSTTH-----HHHHHHHHHHHT
T ss_pred             CCCCCCEEEEEEEEEEEcccccccccccCCCCchheEEEEEhhccccchhhH-----HHHHHHHHHHHh
Confidence            11111  12234444433222  1111 235789999999999998874433     244444444443

>d1u20a1 d.113.1.1 (A:14-209) U8 snorna-binding protein x29 {African clawed frog (Xenopus laevis) [TaxId: 8355]}

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutT-like
domain: U8 snorna-binding protein x29
species: African clawed frog (Xenopus laevis) [TaxId: 8355]

Probab=99.38  E-value=7.1e-13  Score=108.63  Aligned_cols=98  Identities=19%  Similarity=0.267  Sum_probs=63.7

Q ss_pred             CceEEEEEEecCCCCCCCceeCcceeccCCCC-HHHHHHHHHHHHhCCCcceeEEEE--EEeee--ccccceEEEEEEEE
Q 039665          134 KRELLVVQENNGALKGTGVWKLPTGTIEEGED-ICAAAVREVKEETGIDTEFVEVLA--FRQSH--RSFFRKSDLFFVCM  208 (275)
Q Consensus       134 ~~~vLLv~r~~~~~~~~~~w~lPgG~ve~gEs-~~~aA~REl~EEtGl~~~~~~~l~--~~~~~--~~~~~~~~~~f~~~  208 (275)
                      +..|||++|.      .|.|.||||++|+||+ +++||.||++||||+.+....++.  ....+  ........++|++.
T Consensus        42 ~~~vl~~~r~------~g~~~~pgg~~~~~e~~~~~~~~re~~ee~g~~~~~~~l~~~~~~~~~~~~~~~~~v~~fy~~~  115 (196)
T d1u20a1          42 RRVLLMMMRF------DGRLGFPGGFVDTRDISLEEGLKRELEEELGPALATVEVTEDDYRSSQVREHPQKCVTHFYIKE  115 (196)
T ss_dssp             CEEEEEEEET------TSCEECSEEEECTTTSCHHHHHHHHHHHHHCGGGGGCCCCGGGEEEEEEECTTSCEEEEEEEEE
T ss_pred             CcEEEEEEec------CCcEECCccccCCCCCcHHHHHHHHHHHHhCccceeEEEEeeEEEEeccCCCCCEEEEEEEEEE
Confidence            3456676653      4789999999999996 678999999999999987665432  11111  12222344556554


Q ss_pred             EecCC--------ccccCCccccceEEEEeHhhHhcC
Q 039665          209 LRPRN--------FHIQKQDSEIAAAQWMQAEDYAAQ  237 (275)
Q Consensus       209 ~~~~~--------~~~~~~~~E~~~~~Wv~~eel~~~  237 (275)
                      +....        ........|+.++.|+|+.++.+.
T Consensus       116 ~~~~~l~~~e~~~~~a~~~~~E~~~~~wVPl~~L~d~  152 (196)
T d1u20a1         116 LKLEEIERIEAEAVNAKDHGLEVMGLIRVPLYTLRDR  152 (196)
T ss_dssp             CCHHHHHHHHHHHTTSTTBTTTEEEEEECCCSBCTTS
T ss_pred             cchHHhhhhhhcccccCcCCccccceeEEeHHHhccc
Confidence            42111        111223468889999999987653