Citrus Sinensis ID: 039667

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------
Protein Sequence
MADNLIGPRRYSCYRCRNLVSCHEDIVSKGFQASSGRAFLFSHAANIVEGPKEDQHLLTGLHTVADVYCADCGELLGWTYKRAFEESQKYKEGKIVLEKFKIAKDNW
Secondary Structure (PSIPRED)
cccccccccEEEcccccccccccccEEEEcEEcccccEEEEEcccccccccccccccccccEEEEEEEcccccccccEEEccccccccccccccEEEEEcccccccc
Secondary Structure Prediction (SSPRO)
ccccccccEEEEcHHcccHHccHHHHHHHHcccccccEEEEccEEEEEcccHHHHEHHccccEEEEEEEHccccEEEEEEHEHcHcccccccccEEEEHHHHHHccc
Coil and Loop (DISEMBL)
madnligprryscyrcrnlvscHEDIVSkgfqassgraflfshaanivegpkedqhlltglhtvadvYCADCGELLGWTYKRAFEESQKYKEGKIVLEKFKIAKDNW
Flexible Loop (DISEMBL)
madnligprrySCYRCRNLVSCHEDIVSKGFQASSGRAFLFSHAANIVEGPKEDQHLLTGLHTVADVYCADCGELLGWTYKRAFeesqkykegkivlekfkiakdnw
Low Complexity Region (SEG)
MADNLIGPRRYSCYRCRNLVSCHEDIVSKGFQASSGRAFLFSHAANIVEGPKEDQHLLTGLHTVADVYCADCGELLGWTYKRAFEESQKYKEGKIVLEKFKIAKDNW
Disordered region (IsUnstruct)
*****IGPRRYSCYRCRNLVSCHEDIVSKGFQASSGRAFLFSHAANIVEGPKEDQHLLTGLHTVADVYCADCGELLGWTYKRAFEESQKYKEGKIVLEKFKI*****
Disordered Region (DISOPRED)
MADNLIGPRRYSCYRCRNLVSCHEDIVSKGFQASSGRAFLFSHAANIVEGPKEDQHLLTGLHTVADVYCADCGELLGWTYKRAFEESQKYKEGKIVLEKFKIAKDNW
Disordered Region (DISEMBL)
MADNLIGPRRYSCYRCRNLVSCHEDIVSKGFQASSGRAFLFSHAANIVEGPKEDQHLLTGLHTVADVYCADCGELLGWTYKRAFEESQKYKEGKIVLEKFKIAKDNW
Disordered Region (DISPRO)
****LIGPRRYSCYRCRNLVSCHEDIVSKGFQASSGRAFLFSHAANIVEGPKEDQHLLTGLHTVADVYCADCGELLGWTYKRAFEESQKYKEGKIVLEKFKIAKDNW
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MADNLIGPRRYSCYRCRNLVSCHEDIVSKGFQASSGRAFLFSHAANIVEGPKEDQHLLTGLHTVADVYCADCGELLGWTYKRAFEESQKYKEGKIVLEKFKIAKDNW
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	107	2.2.26 [Sep-21-2011]
Q9T096	106	Protein yippee-like At4g2	yes	no	0.953	0.962	0.686	3e-37
Q6NWI4	119	Protein yippee-like 3 OS=	yes	no	0.915	0.823	0.551	6e-27
Q65Z54	119	Protein yippee-like 3 OS=	N/A	no	0.915	0.823	0.551	9e-27
P61237	119	Protein yippee-like 3 OS=	yes	no	0.915	0.823	0.540	3e-26
P61236	119	Protein yippee-like 3 OS=	no	no	0.915	0.823	0.540	3e-26
Q65Z57	119	Protein yippee-like 3 OS=	N/A	no	0.915	0.823	0.540	3e-26
A6QPH8	119	Protein yippee-like 3 OS=	yes	no	0.915	0.823	0.540	3e-26
O60688	119	Protein yippee-like 1 OS=	no	no	0.915	0.823	0.530	6e-26
Q9DG42	119	Protein yippee-like 1 OS=	N/A	no	0.915	0.823	0.530	6e-26
Q65Z59	119	Protein yippee-like 1 OS=	N/A	no	0.915	0.823	0.530	6e-26

>sp|Q9T096|YIPL6_ARATH Protein yippee-like At4g27745 OS=Arabidopsis thaliana GN=At4g27745 PE=3 SV=2

 Score =  153 bits (387), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 70/102 (68%), Positives = 81/102 (79%)

Query: 6   IGPRRYSCYRCRNLVSCHEDIVSKGFQASSGRAFLFSHAANIVEGPKEDQHLLTGLHTVA 65
           IGPR YSC  CRN V  H+DI+SK FQ  +GRAFLFSHA NIV GPKED++LLTGLHTVA
Sbjct: 5   IGPRLYSCCNCRNHVGLHDDIISKAFQGRTGRAFLFSHAMNIVVGPKEDRNLLTGLHTVA 64

Query: 66  DVYCADCGELLGWTYKRAFEESQKYKEGKIVLEKFKIAKDNW 107
           D+ C DC E LGW Y+RA+E SQKYKEGK + EK KI K++W
Sbjct: 65  DISCVDCNEPLGWKYERAYETSQKYKEGKFIFEKAKIVKEDW 106

Arabidopsis thaliana (taxid: 3702)

>sp|Q6NWI4|YPEL3_DANRE Protein yippee-like 3 OS=Danio rerio GN=ypel3 PE=3 SV=1

 Score =  119 bits (297), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 54/98 (55%), Positives = 71/98 (72%)

Query: 9   RRYSCYRCRNLVSCHEDIVSKGFQASSGRAFLFSHAANIVEGPKEDQHLLTGLHTVADVY 68
           RRYSC  CR  ++ H+D++SK FQ S GRA+LF+   N+  GP E++ LLTGLH VAD+Y
Sbjct: 19  RRYSCVHCRAHLANHDDLISKSFQGSQGRAYLFNSVVNVGCGPAEERLLLTGLHAVADIY 78

Query: 69  CADCGELLGWTYKRAFEESQKYKEGKIVLEKFKIAKDN 106
           C +C   LGW Y++AFE SQKYKEGK ++E   + KDN
Sbjct: 79  CENCHTTLGWKYEQAFELSQKYKEGKFIIELSHMIKDN 116

May be involved in proliferation and apoptosis in myeloid precursor cells.

Danio rerio (taxid: 7955)

>sp|Q65Z54|YPEL3_ORYLA Protein yippee-like 3 OS=Oryzias latipes GN=ypel3 PE=3 SV=1

 Score =  118 bits (296), Expect = 9e-27,   Method: Compositional matrix adjust.
 Identities = 54/98 (55%), Positives = 71/98 (72%)

Query: 9   RRYSCYRCRNLVSCHEDIVSKGFQASSGRAFLFSHAANIVEGPKEDQHLLTGLHTVADVY 68
           RRYSC  CR  ++ H+D++SK FQ S GRA+LF+   N+  GP E++ LLTGLH VAD+Y
Sbjct: 19  RRYSCVHCRAHLANHDDLISKSFQGSQGRAYLFNSVVNVGCGPAEERLLLTGLHAVADIY 78

Query: 69  CADCGELLGWTYKRAFEESQKYKEGKIVLEKFKIAKDN 106
           C +C   LGW Y++AFE SQKYKEGK ++E   + KDN
Sbjct: 79  CENCHTTLGWKYEQAFELSQKYKEGKYIIELSHMIKDN 116

May be involved in proliferation and apoptosis in myeloid precursor cells.

Oryzias latipes (taxid: 8090)

>sp|P61237|YPEL3_MOUSE Protein yippee-like 3 OS=Mus musculus GN=Ypel3 PE=1 SV=1

 Score =  117 bits (292), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 53/98 (54%), Positives = 71/98 (72%)

Query: 9   RRYSCYRCRNLVSCHEDIVSKGFQASSGRAFLFSHAANIVEGPKEDQHLLTGLHTVADVY 68
           RRYSC  CR  ++ H+D++SK FQ S GRA+LF+   N+  GP E++ LLTGLH VAD++
Sbjct: 19  RRYSCAHCRAHLANHDDLISKSFQGSQGRAYLFNSVVNVGCGPAEERVLLTGLHAVADIH 78

Query: 69  CADCGELLGWTYKRAFEESQKYKEGKIVLEKFKIAKDN 106
           C +C   LGW Y++AFE SQKYKEGK ++E   + KDN
Sbjct: 79  CENCKTTLGWKYEQAFESSQKYKEGKYIIELNHMIKDN 116

Involved in proliferation and apoptosis in myeloid precursor cells.

Mus musculus (taxid: 10090)

>sp|P61236|YPEL3_HUMAN Protein yippee-like 3 OS=Homo sapiens GN=YPEL3 PE=2 SV=1

 Score =  117 bits (292), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 53/98 (54%), Positives = 71/98 (72%)

Query: 9   RRYSCYRCRNLVSCHEDIVSKGFQASSGRAFLFSHAANIVEGPKEDQHLLTGLHTVADVY 68
           RRYSC  CR  ++ H+D++SK FQ S GRA+LF+   N+  GP E++ LLTGLH VAD++
Sbjct: 19  RRYSCAHCRAHLANHDDLISKSFQGSQGRAYLFNSVVNVGCGPAEERVLLTGLHAVADIH 78

Query: 69  CADCGELLGWTYKRAFEESQKYKEGKIVLEKFKIAKDN 106
           C +C   LGW Y++AFE SQKYKEGK ++E   + KDN
Sbjct: 79  CENCKTTLGWKYEQAFESSQKYKEGKYIIELNHMIKDN 116

Involved in proliferation and apoptosis in myeloid precursor cells.

Homo sapiens (taxid: 9606)

>sp|Q65Z57|YPEL3_CHLAE Protein yippee-like 3 OS=Chlorocebus aethiops GN=YPEL3 PE=3 SV=1

 Score =  117 bits (292), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 53/98 (54%), Positives = 71/98 (72%)

Query: 9   RRYSCYRCRNLVSCHEDIVSKGFQASSGRAFLFSHAANIVEGPKEDQHLLTGLHTVADVY 68
           RRYSC  CR  ++ H+D++SK FQ S GRA+LF+   N+  GP E++ LLTGLH VAD++
Sbjct: 19  RRYSCAHCRAHLANHDDLISKSFQGSQGRAYLFNSVVNVGCGPAEERVLLTGLHAVADIH 78

Query: 69  CADCGELLGWTYKRAFEESQKYKEGKIVLEKFKIAKDN 106
           C +C   LGW Y++AFE SQKYKEGK ++E   + KDN
Sbjct: 79  CENCKTTLGWKYEQAFESSQKYKEGKYIIELNHMIKDN 116

Chlorocebus aethiops (taxid: 9534)

>sp|A6QPH8|YPEL3_BOVIN Protein yippee-like 3 OS=Bos taurus GN=YPEL3 PE=3 SV=2

 Score =  117 bits (292), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 53/98 (54%), Positives = 71/98 (72%)

Query: 9   RRYSCYRCRNLVSCHEDIVSKGFQASSGRAFLFSHAANIVEGPKEDQHLLTGLHTVADVY 68
           RRYSC  CR  ++ H+D++SK FQ S GRA+LF+   N+  GP E++ LLTGLH VAD++
Sbjct: 19  RRYSCAHCRAHLANHDDLISKSFQGSQGRAYLFNSVVNVGCGPAEERVLLTGLHAVADIH 78

Query: 69  CADCGELLGWTYKRAFEESQKYKEGKIVLEKFKIAKDN 106
           C +C   LGW Y++AFE SQKYKEGK ++E   + KDN
Sbjct: 79  CENCKTTLGWKYEQAFESSQKYKEGKYIIELNHMIKDN 116

Involved in proliferation and apoptosis in myeloid precursor cells.

Bos taurus (taxid: 9913)

>sp|O60688|YPEL1_HUMAN Protein yippee-like 1 OS=Homo sapiens GN=YPEL1 PE=2 SV=1

 Score =  115 bits (289), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 52/98 (53%), Positives = 69/98 (70%)

Query: 9   RRYSCYRCRNLVSCHEDIVSKGFQASSGRAFLFSHAANIVEGPKEDQHLLTGLHTVADVY 68
           R YSC  CR  ++ H++++SK FQ S GRA+LF+   N+  GP E++ LLTGLH VAD+Y
Sbjct: 19  RTYSCIHCRAHLANHDELISKSFQGSQGRAYLFNSVVNVGCGPAEERVLLTGLHAVADIY 78

Query: 69  CADCGELLGWTYKRAFEESQKYKEGKIVLEKFKIAKDN 106
           C +C   LGW Y+ AFE SQKYKEGK ++E   + KDN
Sbjct: 79  CENCKTTLGWKYEHAFESSQKYKEGKFIIELAHMIKDN 116

May play a role in epithelioid conversion of fibroblasts.

Homo sapiens (taxid: 9606)

>sp|Q9DG42|YPEL1_COTJA Protein yippee-like 1 OS=Coturnix coturnix japonica GN=YPEL1 PE=3 SV=1

 Score =  115 bits (289), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 52/98 (53%), Positives = 69/98 (70%)

Query: 9   RRYSCYRCRNLVSCHEDIVSKGFQASSGRAFLFSHAANIVEGPKEDQHLLTGLHTVADVY 68
           R YSC  CR  ++ H++++SK FQ S GRA+LF+   N+  GP E++ LLTGLH VAD+Y
Sbjct: 19  RTYSCIHCRAHLANHDELISKSFQGSQGRAYLFNSVVNVGCGPAEERVLLTGLHAVADIY 78

Query: 69  CADCGELLGWTYKRAFEESQKYKEGKIVLEKFKIAKDN 106
           C +C   LGW Y+ AFE SQKYKEGK ++E   + KDN
Sbjct: 79  CENCKTTLGWKYEHAFESSQKYKEGKFIIELAHMIKDN 116

Coturnix coturnix japonica (taxid: 93934)

>sp|Q65Z59|YPEL1_CHLAE Protein yippee-like 1 OS=Chlorocebus aethiops GN=YPEL1 PE=3 SV=1

 Score =  115 bits (289), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 52/98 (53%), Positives = 69/98 (70%)

Query: 9   RRYSCYRCRNLVSCHEDIVSKGFQASSGRAFLFSHAANIVEGPKEDQHLLTGLHTVADVY 68
           R YSC  CR  ++ H++++SK FQ S GRA+LF+   N+  GP E++ LLTGLH VAD+Y
Sbjct: 19  RTYSCIHCRAHLANHDELISKSFQGSQGRAYLFNSVVNVGCGPAEERVLLTGLHAVADIY 78

Query: 69  CADCGELLGWTYKRAFEESQKYKEGKIVLEKFKIAKDN 106
           C +C   LGW Y+ AFE SQKYKEGK ++E   + KDN
Sbjct: 79  CENCKTTLGWKYEHAFESSQKYKEGKFIIELAHMIKDN 116

May play a role in epithelioid conversion of fibroblasts.

Chlorocebus aethiops (taxid: 9534)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	107
224127979	107	predicted protein [Populus trichocarpa]	1.0	1.0	0.719	4e-42
255564613	105	fad NAD binding oxidoreductases, putativ	0.971	0.990	0.759	7e-42
351721698	106	uncharacterized protein LOC100527552 [Gl	0.962	0.971	0.747	8e-40
388509814	106	unknown [Lotus japonicus]	0.962	0.971	0.737	2e-39
351727751	106	uncharacterized protein LOC100306443 [Gl	0.962	0.971	0.737	2e-39
255549194	106	fad NAD binding oxidoreductases, putativ	0.990	1.0	0.728	3e-39
388501512	106	unknown [Lotus japonicus]	0.962	0.971	0.718	1e-38
356535282	106	PREDICTED: protein yippee-like At4g27745	0.981	0.990	0.685	4e-38
224132694	106	predicted protein [Populus trichocarpa]	0.962	0.971	0.708	8e-38
449456411	106	PREDICTED: protein yippee-like At4g27745	0.962	0.971	0.699	1e-37

>gi|224127979|ref|XP_002320211.1| predicted protein [Populus trichocarpa] gi|222860984|gb|EEE98526.1| predicted protein [Populus trichocarpa]

 Score =  175 bits (443), Expect = 4e-42,   Method: Compositional matrix adjust.
 Identities = 77/107 (71%), Positives = 94/107 (87%)

Query: 1   MADNLIGPRRYSCYRCRNLVSCHEDIVSKGFQASSGRAFLFSHAANIVEGPKEDQHLLTG 60
           MA+  +GPR Y C++CRNLVSCH+DIVSK F+A++GRA LFSHA NI+ GPKED+ L+TG
Sbjct: 1   MAEGAVGPRLYCCFKCRNLVSCHDDIVSKTFRANNGRAILFSHAMNIILGPKEDRRLITG 60

Query: 61  LHTVADVYCADCGELLGWTYKRAFEESQKYKEGKIVLEKFKIAKDNW 107
           +HT+ADVYC+DCGELLGW Y +A+EESQKYKEGKIVLE FKI K+NW
Sbjct: 61  VHTIADVYCSDCGELLGWKYWKAYEESQKYKEGKIVLENFKIVKENW 107

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255564613|ref|XP_002523301.1| fad NAD binding oxidoreductases, putative [Ricinus communis] gi|223537389|gb|EEF39017.1| fad NAD binding oxidoreductases, putative [Ricinus communis]

 Score =  174 bits (441), Expect = 7e-42,   Method: Compositional matrix adjust.
 Identities = 79/104 (75%), Positives = 93/104 (89%)

Query: 3   DNLIGPRRYSCYRCRNLVSCHEDIVSKGFQASSGRAFLFSHAANIVEGPKEDQHLLTGLH 62
           ++ IG R YSCYRCRNLVS H+DI+SKGFQAS+GRAFLFSHA NI+ G KED+ L+TGLH
Sbjct: 2   EDAIGARLYSCYRCRNLVSRHDDIISKGFQASNGRAFLFSHAMNIILGRKEDRQLITGLH 61

Query: 63  TVADVYCADCGELLGWTYKRAFEESQKYKEGKIVLEKFKIAKDN 106
           TVAD+YC+DCGELLGW Y+RA+EESQKYKEGK V+EKFKI K+N
Sbjct: 62  TVADIYCSDCGELLGWKYERAYEESQKYKEGKFVIEKFKIVKEN 105

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|351721698|ref|NP_001237730.1| uncharacterized protein LOC100527552 [Glycine max] gi|255632600|gb|ACU16650.1| unknown [Glycine max]

 Score =  167 bits (423), Expect = 8e-40,   Method: Compositional matrix adjust.
 Identities = 77/103 (74%), Positives = 86/103 (83%)

Query: 5   LIGPRRYSCYRCRNLVSCHEDIVSKGFQASSGRAFLFSHAANIVEGPKEDQHLLTGLHTV 64
           LIGPR YSC  CRN VS H+DI+SK F   +GRAFLFSHA NIV GPKED+HLLTGLHTV
Sbjct: 4   LIGPRLYSCSNCRNHVSLHDDIISKAFHGRNGRAFLFSHAMNIVAGPKEDRHLLTGLHTV 63

Query: 65  ADVYCADCGELLGWTYKRAFEESQKYKEGKIVLEKFKIAKDNW 107
           ADVYC DC E+LGW Y+RA+E SQKYKEGK +LEK KIAK+NW
Sbjct: 64  ADVYCGDCREVLGWKYERAYEASQKYKEGKFILEKSKIAKENW 106

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388509814|gb|AFK42973.1| unknown [Lotus japonicus]

 Score =  166 bits (420), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 76/103 (73%), Positives = 86/103 (83%)

Query: 5   LIGPRRYSCYRCRNLVSCHEDIVSKGFQASSGRAFLFSHAANIVEGPKEDQHLLTGLHTV 64
           LIGPR YSC  CRN VS H+DI+SK FQ  +GRAFLFSHA N+V GPKED+HLLTGLHTV
Sbjct: 4   LIGPRLYSCCNCRNHVSLHDDIISKAFQGKNGRAFLFSHAMNVVTGPKEDRHLLTGLHTV 63

Query: 65  ADVYCADCGELLGWTYKRAFEESQKYKEGKIVLEKFKIAKDNW 107
           ADVYC DC E+LGW Y+RA+E SQKYKEGK +LEK KI K+NW
Sbjct: 64  ADVYCGDCREVLGWKYERAYEASQKYKEGKFILEKSKIVKENW 106

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|351727751|ref|NP_001235124.1| uncharacterized protein LOC100306443 [Glycine max] gi|356509220|ref|XP_003523349.1| PREDICTED: protein yippee-like At4g27745-like [Glycine max] gi|255628561|gb|ACU14625.1| unknown [Glycine max]

 Score =  166 bits (419), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 76/103 (73%), Positives = 85/103 (82%)

Query: 5   LIGPRRYSCYRCRNLVSCHEDIVSKGFQASSGRAFLFSHAANIVEGPKEDQHLLTGLHTV 64
           LIGPR YSC  CRN VS H+DI+SK F   +GRAFLFSHA NIV GPKED+HLLTGLHTV
Sbjct: 4   LIGPRLYSCSNCRNHVSLHDDIISKAFHGRNGRAFLFSHAMNIVTGPKEDRHLLTGLHTV 63

Query: 65  ADVYCADCGELLGWTYKRAFEESQKYKEGKIVLEKFKIAKDNW 107
           ADVYC DC E+LGW Y+RA+E SQKYKEGK +LEK KI K+NW
Sbjct: 64  ADVYCGDCREVLGWKYERAYEASQKYKEGKFILEKSKIVKENW 106

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255549194|ref|XP_002515651.1| fad NAD binding oxidoreductases, putative [Ricinus communis] gi|223545194|gb|EEF46703.1| fad NAD binding oxidoreductases, putative [Ricinus communis]

 Score =  165 bits (418), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 78/107 (72%), Positives = 89/107 (83%), Gaps = 1/107 (0%)

Query: 1   MADNLIGPRRYSCYRCRNLVSCHEDIVSKGFQASSGRAFLFSHAANIVEGPKEDQHLLTG 60
           MAD L+GPR YSC  CRN VS H+DI+SK FQ   GRAFLFSHA NIV GPKED+HL+TG
Sbjct: 1   MAD-LVGPRLYSCCNCRNHVSLHDDIISKAFQGRHGRAFLFSHAMNIVVGPKEDRHLMTG 59

Query: 61  LHTVADVYCADCGELLGWTYKRAFEESQKYKEGKIVLEKFKIAKDNW 107
           LHTVADV+CADC E+LGW Y+RA+E SQKYKEGK +LEK KI K+NW
Sbjct: 60  LHTVADVHCADCCEVLGWKYERAYEASQKYKEGKFILEKSKIVKENW 106

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388501512|gb|AFK38822.1| unknown [Lotus japonicus]

 Score =  163 bits (413), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 74/103 (71%), Positives = 85/103 (82%)

Query: 5   LIGPRRYSCYRCRNLVSCHEDIVSKGFQASSGRAFLFSHAANIVEGPKEDQHLLTGLHTV 64
           +IGPR YSC  CRN VS H+DI+SK FQ  +GRAFLFSHA N+V GPKED+HLLTGLHTV
Sbjct: 4   VIGPRLYSCCNCRNHVSLHDDIISKAFQGKNGRAFLFSHAMNVVTGPKEDRHLLTGLHTV 63

Query: 65  ADVYCADCGELLGWTYKRAFEESQKYKEGKIVLEKFKIAKDNW 107
            DVYC DC E+LGW Y+RA+E SQKYKEGK +LEK KI K+NW
Sbjct: 64  VDVYCGDCREVLGWKYERAYEASQKYKEGKFILEKSKIVKENW 106

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356535282|ref|XP_003536177.1| PREDICTED: protein yippee-like At4g27745-like [Glycine max]

 Score =  161 bits (408), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 72/105 (68%), Positives = 87/105 (82%)

Query: 3   DNLIGPRRYSCYRCRNLVSCHEDIVSKGFQASSGRAFLFSHAANIVEGPKEDQHLLTGLH 62
           + +IGPR Y C  CRN V+ H+D++SK FQ  SGRAFLFSHA N+  GPKED+ L+TGLH
Sbjct: 2   EEVIGPRLYCCSNCRNHVALHDDVISKAFQGKSGRAFLFSHAMNVTVGPKEDRELMTGLH 61

Query: 63  TVADVYCADCGELLGWTYKRAFEESQKYKEGKIVLEKFKIAKDNW 107
           TVADVYC+DC E+LGW Y+RA+EESQKYKEGK VLEK KIA++NW
Sbjct: 62  TVADVYCSDCHEVLGWKYERAYEESQKYKEGKYVLEKAKIARENW 106

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224132694|ref|XP_002321386.1| predicted protein [Populus trichocarpa] gi|222868382|gb|EEF05513.1| predicted protein [Populus trichocarpa]

 Score =  160 bits (405), Expect = 8e-38,   Method: Compositional matrix adjust.
 Identities = 73/103 (70%), Positives = 83/103 (80%)

Query: 5   LIGPRRYSCYRCRNLVSCHEDIVSKGFQASSGRAFLFSHAANIVEGPKEDQHLLTGLHTV 64
            +GPR YSC  CRN VS H+DI+SK FQ   GRAFLFSHA NIV GPKED+HLLTGLHTV
Sbjct: 4   FVGPRLYSCCNCRNHVSLHDDIISKAFQGRHGRAFLFSHAMNIVVGPKEDRHLLTGLHTV 63

Query: 65  ADVYCADCGELLGWTYKRAFEESQKYKEGKIVLEKFKIAKDNW 107
           AD+ CADC E+LGW Y+RA+E SQKYKEGK + EK KI K+NW
Sbjct: 64  ADISCADCREVLGWKYERAYEASQKYKEGKYIFEKLKIVKENW 106

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449456411|ref|XP_004145943.1| PREDICTED: protein yippee-like At4g27745-like [Cucumis sativus] gi|449497379|ref|XP_004160385.1| PREDICTED: protein yippee-like At4g27745-like [Cucumis sativus]

 Score =  159 bits (403), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 72/103 (69%), Positives = 84/103 (81%)

Query: 5   LIGPRRYSCYRCRNLVSCHEDIVSKGFQASSGRAFLFSHAANIVEGPKEDQHLLTGLHTV 64
           L+GPR YSC  CRN V+ H+DI+SK FQ   GRAFLFSHA NI  GPKED+HL+TGLHTV
Sbjct: 4   LLGPRLYSCCNCRNHVAFHDDIISKAFQGRHGRAFLFSHAMNITVGPKEDRHLMTGLHTV 63

Query: 65  ADVYCADCGELLGWTYKRAFEESQKYKEGKIVLEKFKIAKDNW 107
           ADV+C DC E+LGW Y+RA+E SQKYKEGK +LEK KI +DNW
Sbjct: 64  ADVHCVDCREVLGWKYERAYEASQKYKEGKFILEKSKIVRDNW 106

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	107
TAIR|locus:1009023354	106	AT4G27745 "AT4G27745" [Arabido	0.953	0.962	0.686	2.1e-36
ZFIN|ZDB-GENE-030516-4	119	ypel3 "yippee-like 3" [Danio r	0.925	0.831	0.55	3.5e-27
UNIPROTKB|A6QPH8	119	YPEL3 "Protein yippee-like 3"	0.925	0.831	0.54	1.2e-26
UNIPROTKB|P61236	119	YPEL3 "Protein yippee-like 3"	0.925	0.831	0.54	1.2e-26
MGI|MGI:1913340	119	Ypel3 "yippee-like 3 (Drosophi	0.925	0.831	0.54	1.2e-26
UNIPROTKB|A6QLE8	119	YPEL1 "YPEL1 protein" [Bos tau	0.925	0.831	0.53	2.5e-26
UNIPROTKB|E2RE07	119	YPEL1 "Uncharacterized protein	0.925	0.831	0.53	2.5e-26
UNIPROTKB|O60688	119	YPEL1 "Protein yippee-like 1"	0.925	0.831	0.53	2.5e-26
UNIPROTKB|F1RL01	119	YPEL1 "Uncharacterized protein	0.925	0.831	0.53	2.5e-26
MGI|MGI:1913303	118	Ypel1 "yippee-like 1 (Drosophi	0.925	0.838	0.53	2.5e-26

TAIR|locus:1009023354 AT4G27745 "AT4G27745" [Arabidopsis thaliana (taxid:3702)]

 Score = 392 (143.0 bits), Expect = 2.1e-36, P = 2.1e-36
 Identities = 70/102 (68%), Positives = 81/102 (79%)

Query:     6 IGPRRYSCYRCRNLVSCHEDIVSKGFQASSGRAFLFSHAANIVEGPKEDQHLLTGLHTVA 65
             IGPR YSC  CRN V  H+DI+SK FQ  +GRAFLFSHA NIV GPKED++LLTGLHTVA
Sbjct:     5 IGPRLYSCCNCRNHVGLHDDIISKAFQGRTGRAFLFSHAMNIVVGPKEDRNLLTGLHTVA 64

Query:    66 DVYCADCGELLGWTYKRAFEESQKYKEGKIVLEKFKIAKDNW 107
             D+ C DC E LGW Y+RA+E SQKYKEGK + EK KI K++W
Sbjct:    65 DISCVDCNEPLGWKYERAYETSQKYKEGKFIFEKAKIVKEDW 106

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

ZFIN|ZDB-GENE-030516-4 ypel3 "yippee-like 3" [Danio rerio (taxid:7955)]

 Score = 305 (112.4 bits), Expect = 3.5e-27, P = 3.5e-27
 Identities = 55/100 (55%), Positives = 72/100 (72%)

Query:     9 RRYSCYRCRNLVSCHEDIVSKGFQASSGRAFLFSHAANIVEGPKEDQHLLTGLHTVADVY 68
             RRYSC  CR  ++ H+D++SK FQ S GRA+LF+   N+  GP E++ LLTGLH VAD+Y
Sbjct:    19 RRYSCVHCRAHLANHDDLISKSFQGSQGRAYLFNSVVNVGCGPAEERLLLTGLHAVADIY 78

Query:    69 CADCGELLGWTYKRAFEESQKYKEGKIVLEKFKIAKDN-W 107
             C +C   LGW Y++AFE SQKYKEGK ++E   + KDN W
Sbjct:    79 CENCHTTLGWKYEQAFELSQKYKEGKFIIELSHMIKDNGW 118

GO:0007420 "brain development" evidence=IMP

GO:0005634 "nucleus" evidence=IEA

GO:0006915 "apoptotic process" evidence=IEA

GO:0005730 "nucleolus" evidence=IEA

UNIPROTKB|A6QPH8 YPEL3 "Protein yippee-like 3" [Bos taurus (taxid:9913)]

 Score = 300 (110.7 bits), Expect = 1.2e-26, P = 1.2e-26
 Identities = 54/100 (54%), Positives = 72/100 (72%)

Query:     9 RRYSCYRCRNLVSCHEDIVSKGFQASSGRAFLFSHAANIVEGPKEDQHLLTGLHTVADVY 68
             RRYSC  CR  ++ H+D++SK FQ S GRA+LF+   N+  GP E++ LLTGLH VAD++
Sbjct:    19 RRYSCAHCRAHLANHDDLISKSFQGSQGRAYLFNSVVNVGCGPAEERVLLTGLHAVADIH 78

Query:    69 CADCGELLGWTYKRAFEESQKYKEGKIVLEKFKIAKDN-W 107
             C +C   LGW Y++AFE SQKYKEGK ++E   + KDN W
Sbjct:    79 CENCKTTLGWKYEQAFESSQKYKEGKYIIELNHMIKDNGW 118

GO:0005730 "nucleolus" evidence=IEA

UNIPROTKB|P61236 YPEL3 "Protein yippee-like 3" [Homo sapiens (taxid:9606)]

 Score = 300 (110.7 bits), Expect = 1.2e-26, P = 1.2e-26
 Identities = 54/100 (54%), Positives = 72/100 (72%)

Query:     9 RRYSCYRCRNLVSCHEDIVSKGFQASSGRAFLFSHAANIVEGPKEDQHLLTGLHTVADVY 68
             RRYSC  CR  ++ H+D++SK FQ S GRA+LF+   N+  GP E++ LLTGLH VAD++
Sbjct:    19 RRYSCAHCRAHLANHDDLISKSFQGSQGRAYLFNSVVNVGCGPAEERVLLTGLHAVADIH 78

Query:    69 CADCGELLGWTYKRAFEESQKYKEGKIVLEKFKIAKDN-W 107
             C +C   LGW Y++AFE SQKYKEGK ++E   + KDN W
Sbjct:    79 CENCKTTLGWKYEQAFESSQKYKEGKYIIELNHMIKDNGW 118

GO:0005730 "nucleolus" evidence=IEA

MGI|MGI:1913340 Ypel3 "yippee-like 3 (Drosophila)" [Mus musculus (taxid:10090)]

 Score = 300 (110.7 bits), Expect = 1.2e-26, P = 1.2e-26
 Identities = 54/100 (54%), Positives = 72/100 (72%)

Query:     9 RRYSCYRCRNLVSCHEDIVSKGFQASSGRAFLFSHAANIVEGPKEDQHLLTGLHTVADVY 68
             RRYSC  CR  ++ H+D++SK FQ S GRA+LF+   N+  GP E++ LLTGLH VAD++
Sbjct:    19 RRYSCAHCRAHLANHDDLISKSFQGSQGRAYLFNSVVNVGCGPAEERVLLTGLHAVADIH 78

Query:    69 CADCGELLGWTYKRAFEESQKYKEGKIVLEKFKIAKDN-W 107
             C +C   LGW Y++AFE SQKYKEGK ++E   + KDN W
Sbjct:    79 CENCKTTLGWKYEQAFESSQKYKEGKYIIELNHMIKDNGW 118

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0005634 "nucleus" evidence=IEA

GO:0006915 "apoptotic process" evidence=IEA

GO:0008150 "biological_process" evidence=ND

UNIPROTKB|A6QLE8 YPEL1 "YPEL1 protein" [Bos taurus (taxid:9913)]

 Score = 297 (109.6 bits), Expect = 2.5e-26, P = 2.5e-26
 Identities = 53/100 (53%), Positives = 70/100 (70%)

Query:     9 RRYSCYRCRNLVSCHEDIVSKGFQASSGRAFLFSHAANIVEGPKEDQHLLTGLHTVADVY 68
             R YSC  CR  ++ H++++SK FQ S GRA+LF+   N+  GP E++ LLTGLH VAD+Y
Sbjct:    19 RTYSCVHCRAHLANHDELISKSFQGSQGRAYLFNSVVNVGCGPAEERVLLTGLHAVADIY 78

Query:    69 CADCGELLGWTYKRAFEESQKYKEGKIVLEKFKIAKDN-W 107
             C +C   LGW Y+ AFE SQKYKEGK ++E   + KDN W
Sbjct:    79 CENCKTTLGWKYEHAFESSQKYKEGKFIIELAHMIKDNGW 118

GO:0051898 "negative regulation of protein kinase B signaling cascade" evidence=IEA

GO:0031641 "regulation of myelination" evidence=IEA

UNIPROTKB|E2RE07 YPEL1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 297 (109.6 bits), Expect = 2.5e-26, P = 2.5e-26
 Identities = 53/100 (53%), Positives = 70/100 (70%)

Query:     9 RRYSCYRCRNLVSCHEDIVSKGFQASSGRAFLFSHAANIVEGPKEDQHLLTGLHTVADVY 68
             R YSC  CR  ++ H++++SK FQ S GRA+LF+   N+  GP E++ LLTGLH VAD+Y
Sbjct:    19 RTYSCVHCRAHLANHDELISKSFQGSQGRAYLFNSVVNVGCGPAEERVLLTGLHAVADIY 78

Query:    69 CADCGELLGWTYKRAFEESQKYKEGKIVLEKFKIAKDN-W 107
             C +C   LGW Y+ AFE SQKYKEGK ++E   + KDN W
Sbjct:    79 CENCKTTLGWKYEHAFESSQKYKEGKFIIELAHMIKDNGW 118

GO:0051898 "negative regulation of protein kinase B signaling cascade" evidence=IEA

GO:0031641 "regulation of myelination" evidence=IEA

UNIPROTKB|O60688 YPEL1 "Protein yippee-like 1" [Homo sapiens (taxid:9606)]

 Score = 297 (109.6 bits), Expect = 2.5e-26, P = 2.5e-26
 Identities = 53/100 (53%), Positives = 70/100 (70%)

Query:     9 RRYSCYRCRNLVSCHEDIVSKGFQASSGRAFLFSHAANIVEGPKEDQHLLTGLHTVADVY 68
             R YSC  CR  ++ H++++SK FQ S GRA+LF+   N+  GP E++ LLTGLH VAD+Y
Sbjct:    19 RTYSCIHCRAHLANHDELISKSFQGSQGRAYLFNSVVNVGCGPAEERVLLTGLHAVADIY 78

Query:    69 CADCGELLGWTYKRAFEESQKYKEGKIVLEKFKIAKDN-W 107
             C +C   LGW Y+ AFE SQKYKEGK ++E   + KDN W
Sbjct:    79 CENCKTTLGWKYEHAFESSQKYKEGKFIIELAHMIKDNGW 118

GO:0031641 "regulation of myelination" evidence=IEA

GO:0051898 "negative regulation of protein kinase B signaling cascade" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

UNIPROTKB|F1RL01 YPEL1 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 297 (109.6 bits), Expect = 2.5e-26, P = 2.5e-26
 Identities = 53/100 (53%), Positives = 70/100 (70%)

Query:     9 RRYSCYRCRNLVSCHEDIVSKGFQASSGRAFLFSHAANIVEGPKEDQHLLTGLHTVADVY 68
             R YSC  CR  ++ H++++SK FQ S GRA+LF+   N+  GP E++ LLTGLH VAD+Y
Sbjct:    19 RTYSCVHCRAHLANHDELISKSFQGSQGRAYLFNSVVNVGCGPAEERVLLTGLHAVADIY 78

Query:    69 CADCGELLGWTYKRAFEESQKYKEGKIVLEKFKIAKDN-W 107
             C +C   LGW Y+ AFE SQKYKEGK ++E   + KDN W
Sbjct:    79 CENCKTTLGWKYEHAFESSQKYKEGKFIIELAHMIKDNGW 118

GO:0051898 "negative regulation of protein kinase B signaling cascade" evidence=IEA

GO:0031641 "regulation of myelination" evidence=IEA

MGI|MGI:1913303 Ypel1 "yippee-like 1 (Drosophila)" [Mus musculus (taxid:10090)]

 Score = 297 (109.6 bits), Expect = 2.5e-26, P = 2.5e-26
 Identities = 53/100 (53%), Positives = 70/100 (70%)

Query:     9 RRYSCYRCRNLVSCHEDIVSKGFQASSGRAFLFSHAANIVEGPKEDQHLLTGLHTVADVY 68
             R YSC  CR  ++ H++++SK FQ S GRA+LF+   N+  GP E++ LLTGLH VAD+Y
Sbjct:    19 RTYSCIHCRAHLANHDELISKSFQGSQGRAYLFNSVVNVGCGPAEERVLLTGLHAVADIY 78

Query:    69 CADCGELLGWTYKRAFEESQKYKEGKIVLEKFKIAKDN-W 107
             C +C   LGW Y+ AFE SQKYKEGK ++E   + KDN W
Sbjct:    79 CENCKTTLGWKYEHAFESSQKYKEGKFIIELAHMIKDNGW 118

GO:0005515 "protein binding" evidence=IPI

GO:0005575 "cellular_component" evidence=ND

GO:0005634 "nucleus" evidence=IEA

GO:0031641 "regulation of myelination" evidence=IMP

GO:0051898 "negative regulation of protein kinase B signaling cascade" evidence=IMP

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q65Z59	YPEL1_CHLAE	No assigned EC number	0.5306	0.9158	0.8235	N/A	no
Q65Z58	YPEL2_CHLAE	No assigned EC number	0.5306	0.9158	0.8235	N/A	no
Q65Z54	YPEL3_ORYLA	No assigned EC number	0.5510	0.9158	0.8235	N/A	no
Q65Z57	YPEL3_CHLAE	No assigned EC number	0.5408	0.9158	0.8235	N/A	no
P61237	YPEL3_MOUSE	No assigned EC number	0.5408	0.9158	0.8235	yes	no
Q9U3G6	YPL1_CAEEL	No assigned EC number	0.52	0.9345	0.7299	yes	no
Q9T096	YIPL6_ARATH	No assigned EC number	0.6862	0.9532	0.9622	yes	no
Q6NWI4	YPEL3_DANRE	No assigned EC number	0.5510	0.9158	0.8235	yes	no
A6QPH8	YPEL3_BOVIN	No assigned EC number	0.5408	0.9158	0.8235	yes	no
Q9W2X7	YPL1_DROME	No assigned EC number	0.4897	0.9158	0.8596	yes	no
Q9DG42	YPEL1_COTJA	No assigned EC number	0.5306	0.9158	0.8235	N/A	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: fgenesh4_pm.C_LG_XIV000206 hypothetical protein (107 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	107
pfam03226	109	pfam03226, Yippee, Yippee putative zinc-binding pr	3e-49

>gnl|CDD|217436 pfam03226, Yippee, Yippee putative zinc-binding protein

 Score =  151 bits (384), Expect = 3e-49
 Identities = 54/101 (53%), Positives = 69/101 (68%)

Query: 5   LIGPRRYSCYRCRNLVSCHEDIVSKGFQASSGRAFLFSHAANIVEGPKEDQHLLTGLHTV 64
           L G R YSC  C+  ++ H DI+SK F    GRA+LF+   N+VEG  ED+ +LTGLHTV
Sbjct: 9   LTGGRIYSCKHCKTHLALHSDIISKSFTGRHGRAYLFNRVVNVVEGEPEDRQMLTGLHTV 68

Query: 65  ADVYCADCGELLGWTYKRAFEESQKYKEGKIVLEKFKIAKD 105
            D++C  CG  LGW Y+ A+EESQKYKEGK +LE+  I K 
Sbjct: 69  RDIFCVGCGTTLGWKYEFAYEESQKYKEGKFILERALITKI 109

Length = 109

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	107
KOG3399	122	consensus Predicted Yippee-type zinc-binding prote	100.0
PF03226	96	Yippee-Mis18: Yippee zinc-binding/DNA-binding /Mis	100.0
PF11648	123	RIG-I_C-RD: C-terminal domain of RIG-I; InterPro:	95.8
PF01641	124	SelR: SelR domain; InterPro: IPR002579 Peptide met	94.94
TIGR00357	134	methionine-R-sulfoxide reductase. This model descr	94.91
PRK00222	142	methionine sulfoxide reductase B; Provisional	94.25
PRK05508	119	methionine sulfoxide reductase B; Provisional	92.9
PRK05550	283	bifunctional methionine sulfoxide reductase B/A pr	91.24
PRK14018	521	trifunctional thioredoxin/methionine sulfoxide red	90.55
COG0229	140	Conserved domain frequently associated with peptid	87.81
PF14976	150	FAM72: FAM72 protein	84.39
KOG0856	146	consensus Predicted pilin-like transcription facto	80.37

>KOG3399 consensus Predicted Yippee-type zinc-binding protein [General function prediction only]

Probab=100.00  E-value=2e-51  Score=293.94  Aligned_cols=104  Identities=48%  Similarity=0.942  Sum_probs=99.6

Q ss_pred             ecCC-CCeEEeccCCCCCCCCCCeeeeceeCCCceEEEeecccccccCCccceeeceecEEEeeeecccCCCceeeeEEe
Q 039667            4 NLIG-PRRYSCYRCRNLVSCHEDIVSKGFQASSGRAFLFSHAANIVEGPKEDQHLLTGLHTVADVYCADCGELLGWTYKR   82 (107)
Q Consensus         4 ~l~g-~~~y~C~~C~thLa~~~~liSk~f~G~~G~AyLf~~v~Nv~~g~~e~r~m~TG~h~V~DI~C~~C~~~lGWkY~~   82 (107)
                      +|++ ++.|+|++|+|||++++|||||+|+|++|+||||++|+||+.|+.|+|.|+||+|+|+||+|+.|++.|||||+.
T Consensus         8 ~l~~~~~~y~C~~C~thla~~~dliSksf~gr~G~AyLf~~vvNv~~ge~e~R~mlTG~h~V~di~C~~C~~~~GWkYe~   87 (122)
T KOG3399|consen    8 MLEANHRLYSCAHCKTHLARHDDLISKSFRGRTGRAYLFNRVVNVIIGETEQRVMLTGLHTVADIFCVLCGTGLGWKYEH   87 (122)
T ss_pred             HhccCCceEeccCCcccccchhhccccccccCCCcchhhhhhhhheechHHHHHHHHhHHhhcchhhhhcCCCcceeeee
Confidence            4454 479999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ecccccccccccEEEEeccccccC-C
Q 039667           83 AFEESQKYKEGKIVLEKFKIAKDN-W  107 (107)
Q Consensus        83 A~e~sqkYKEGkfIlE~~~i~~~~-w  107 (107)
                      |||+||||||||||||+++|.+.+ |
T Consensus        88 a~e~sQkyKEGk~ilE~~~i~~~~g~  113 (122)
T KOG3399|consen   88 AYEKSQKYKEGKFILELAEIFKPEGW  113 (122)
T ss_pred             ccCchhhhcCcchHHHHHHhcCCCCc
Confidence            999999999999999999999976 5

>PF03226 Yippee-Mis18: Yippee zinc-binding/DNA-binding /Mis18, centromere assembly; InterPro: IPR004910 This entry represents the Yippee-like (YPEL) family of putative zinc-binding proteins which is highly conserved among eukaryotes

Probab=100.00  E-value=4.2e-34  Score=193.47  Aligned_cols=89  Identities=44%  Similarity=0.921  Sum_probs=85.3

Q ss_pred             eEEeccCCCCCCCCCCeeeeceeCCCceEEEeecccccccCCccceeeceec----EEEeeeecccCCCceeeeEEeecc
Q 039667           10 RYSCYRCRNLVSCHEDIVSKGFQASSGRAFLFSHAANIVEGPKEDQHLLTGL----HTVADVYCADCGELLGWTYKRAFE   85 (107)
Q Consensus        10 ~y~C~~C~thLa~~~~liSk~f~G~~G~AyLf~~v~Nv~~g~~e~r~m~TG~----h~V~DI~C~~C~~~lGWkY~~A~e   85 (107)
                      +|.|++|++||+++++|+|  |+|+.|+||||+   ||..+++++|.|+||.    |+|+||+|++|++.|||||+.|++
T Consensus         2 vf~C~~C~t~l~ds~~lvs--~~g~~~~a~l~~---~v~~~~~~~~~~~t~~~~~~~~~~~l~C~~C~~~lGwkY~~a~~   76 (96)
T PF03226_consen    2 VFQCKNCKTILADSNELVS--FHGREGKAYLFN---NVSNGVPVDRELMTGETGGDHTVRDLFCSGCNTILGWKYESAPE   76 (96)
T ss_pred             EEECCCCCCCcCCHHHhee--cCCCCccEEEEe---eeeecccccceEEEeeCCCCEEEEEeEcccCChhHCcEEEEcCH
Confidence            7999999999999999999  999999999998   7788888999999999    999999999999999999999999


Q ss_pred             cccccccccEEEEeccccc
Q 039667           86 ESQKYKEGKIVLEKFKIAK  104 (107)
Q Consensus        86 ~sqkYKEGkfIlE~~~i~~  104 (107)
                      + |+||||+||||++.|..
T Consensus        77 ~-~~~k~g~file~~~i~~   94 (96)
T PF03226_consen   77 E-QKYKEGKFILEKASISS   94 (96)
T ss_pred             h-HhhhCCEEEEEhhHEEE
Confidence            9 99999999999998864

The first protein in this family to be characterised, the Yippee protein from Drosophila, was identified by yeast interaction trap screen as a protein that physically interacts with moth hemolin []. It was subsequently found to be a member of a highly conserved family of proteins found in diverse eukaryotes including plants, animals and fungi []. Mammals contain five members of this family, YPEL1 to YPEL5, while other organisms tend to contain only two or three members. The mammalian proteins all appear to localise in the nucleus. YPEL1-4 are located in an unknown structure located on or close to the mitotic apparatus in the mitotic phase, whereas in the interphase they are located in the nuclei and nucleoli. In contrast, YPEL5 is localised to the centrosome and nucleus during interphase and at the mitotic spindle during mitosis, suggesting a function distinct from that of YPEL1-4. The localisation of the YPEL proteins suggests a novel, thopugh still unknown, function involved in cell division.

>PF11648 RIG-I_C-RD: C-terminal domain of RIG-I; InterPro: IPR021673 This family of proteins represents the regulatory domain RD of RIG-I, a protein which initiates a signalling cascade that provides essential antiviral protection for the host

Probab=95.80  E-value=0.0056  Score=43.62  Aligned_cols=88  Identities=19%  Similarity=0.268  Sum_probs=57.7

Q ss_pred             eEEeccCCCCCCCCCCeeee--ceeCCCceEEEeecccccccCCccceeeceecEEEeeeecccCCCceeeeEEeecccc
Q 039667           10 RYSCYRCRNLVSCHEDIVSK--GFQASSGRAFLFSHAANIVEGPKEDQHLLTGLHTVADVYCADCGELLGWTYKRAFEES   87 (107)
Q Consensus        10 ~y~C~~C~thLa~~~~liSk--~f~G~~G~AyLf~~v~Nv~~g~~e~r~m~TG~h~V~DI~C~~C~~~lGWkY~~A~e~s   87 (107)
                      .+.|++|.+.++..+||-.-  +-+=--.+.  |...+.+...|.+.....-+.+....|+|..|+..+|-.+..---+=
T Consensus         4 ~llC~kC~~~~C~~~DIr~ie~~hhv~v~p~--F~~~~~~~~~~~~~~~~~~d~~~~~~I~C~~C~~~wG~~m~yk~~~L   81 (123)
T PF11648_consen    4 KLLCRKCKKFACSGSDIRKIENSHHVVVDPE--FWERYIVRPHPKPLQKSFGDWEPNGKIHCKNCGQDWGIMMKYKGVEL   81 (123)
T ss_dssp             EEEETTTTCEEEEGGGEEEETTTEEEE-SHH--HHCTEEEEECSSCTSEEESSSEEEEEEEETSTSBEEEEEEEETTEEE
T ss_pred             EEECCCCCceeEchhheEEecCCcEEEcCcc--ceeeEEeccCCccccceecceEeCCEEEcCCCChHhhhheEECCccc
Confidence            48899999999999998664  111111233  33566666666654444558889999999999999998775533223


Q ss_pred             cccccccEEEEe
Q 039667           88 QKYKEGKIVLEK   99 (107)
Q Consensus        88 qkYKEGkfIlE~   99 (107)
                      =-.|.-.|+++.
T Consensus        82 P~L~iksfvv~~   93 (123)
T PF11648_consen   82 PCLKIKSFVVEL   93 (123)
T ss_dssp             EEE-GGGEEEEE
T ss_pred             cEEEeeeeeeee
Confidence            344555666443

The RD domain binds viral RNA, activating the RIG-I ATPase by RNA-dependent dimerisation. The structure of RD contains a zinc-binding domain and is thought to confer ligand specificity []. ; GO: 0016817 hydrolase activity, acting on acid anhydrides; PDB: 2RQB_A 3GA3_A 2W4R_D 3EQT_A 2RQA_A 2RMJ_A 3NCU_A 2QFD_C 2QFB_D 3TMI_A ....

>PF01641 SelR: SelR domain; InterPro: IPR002579 Peptide methionine sulphoxide reductase (Msr) reverses the inactivation of many proteins due to the oxidation of critical methionine residues by reducing methionine sulphoxide, Met(O), to methionine []

Probab=94.94  E-value=0.017  Score=41.77  Aligned_cols=73  Identities=21%  Similarity=0.407  Sum_probs=45.9

Q ss_pred             CCCeEEeccCCCCCCCCCCeeeeceeCCCceEEEeecccccccCCccceeeceecEEEeeeecccCCCceeeeEEeeccc
Q 039667            7 GPRRYSCYRCRNLVSCHEDIVSKGFQASSGRAFLFSHAANIVEGPKEDQHLLTGLHTVADVYCADCGELLGWTYKRAFEE   86 (107)
Q Consensus         7 g~~~y~C~~C~thLa~~~~liSk~f~G~~G~AyLf~~v~Nv~~g~~e~r~m~TG~h~V~DI~C~~C~~~lGWkY~~A~e~   86 (107)
                      ..-+|.|+.|+++|=+++    ..|....|=.-.+..+..-.+...+|..  -|+.. ..|.|..|+..||=-......+
T Consensus        34 ~~G~Y~C~~Cg~pLF~S~----~Kf~Sg~GWPSF~~~i~~~~v~~~~D~s--~g~~R-~Ev~C~~Cg~HLGHVF~DGp~~  106 (124)
T PF01641_consen   34 EEGIYVCAVCGTPLFSSD----TKFDSGCGWPSFWQPIPGDAVKEREDFS--HGMVR-TEVRCARCGSHLGHVFDDGPPP  106 (124)
T ss_dssp             SSEEEEETTTS-EEEEGG----GEETSSSSSSEESSCSSTTSEEEEEEEC--TSSEE-EEEEETTTCCEEEEEESTSSTT
T ss_pred             CCEEEEcCCCCCccccCc----ccccCCcCCccccCcCChHHEEEecccc--CCceE-EEEEecCCCCccccEeCCCCCC
Confidence            345899999999997665    3566666655545544432233333332  24544 4899999999999777655543

It is present in most living organisms, and the cognate structural gene belongs to the so-called minimum gene set [, ]. The domains: MsrA and MsrB, reduce different epimeric forms of methionine sulphoxide. This group represents MsrB, the crystal structure of which has been determined to 1.8A []. The overall structure shows no resemblance to the structures of MsrA (IPR002569 from INTERPRO) from other organisms; though the active sites show approximate mirror symmetry. In each case, conserved amino acid motifs mediate the stereo-specific recognition and reduction of the substrate. Unlike the MsrA domain, the MsrB domain activates the cysteine or selenocysteine nucleophile through a unique Cys-Arg-Asp/Glu catalytic triad. The collapse of the reaction intermediate most likely results in the formation of a sulphenic or selenenic acid moiety. Regeneration of the active site occurs through a series of thiol-disulphide exchange steps involving another active site Cys residue and thioredoxin. In a number of pathogenic bacteria, including Neisseria gonorrhoeae, the MsrA and MsrB domains are fused; the MsrA being N-terminal to MsrB. This arrangement is reversed in Treponema pallidum. In N. gonorrhoeae and Neisseria meningitidis, a thioredoxin domain is fused to the N terminus. This may function to reduce the active sites of the downstream MsrA and MsrB domains. ; GO: 0008113 peptide-methionine-(S)-S-oxide reductase activity, 0055114 oxidation-reduction process; PDB: 1L1D_A 3E0O_D 2KZN_A 3HCG_B 3HCH_A 2L1U_A 3MAO_A 2K8D_A 3HCJ_A 3HCI_A ....

>TIGR00357 methionine-R-sulfoxide reductase

Probab=94.91  E-value=0.027  Score=41.25  Aligned_cols=67  Identities=19%  Similarity=0.439  Sum_probs=43.8

Q ss_pred             CCeEEeccCCCCCCCCCCeeeeceeCCCceEEEeecc-cccccCCccceeeceecEEEeeeecccCCCceeeeEEe
Q 039667            8 PRRYSCYRCRNLVSCHEDIVSKGFQASSGRAFLFSHA-ANIVEGPKEDQHLLTGLHTVADVYCADCGELLGWTYKR   82 (107)
Q Consensus         8 ~~~y~C~~C~thLa~~~~liSk~f~G~~G~AyLf~~v-~Nv~~g~~e~r~m~TG~h~V~DI~C~~C~~~lGWkY~~   82 (107)
                      +-+|.|+.|+++|=.+++    .|....|=.-.+..+ -|. +...+|+.  -|+.. ..|.|..|+..||=-...
T Consensus        38 ~G~Y~C~~Cg~pLF~S~~----KfdSg~GWPSF~~~i~~~~-V~~~~D~s--~gm~R-tEv~C~~Cg~HLGHVF~D  105 (134)
T TIGR00357        38 EGIYVDITCGEPLFSSED----KFDSGCGWPSFYKPISEEV-VAYERDES--HGMIR-TEVRCRNCDAHLGHVFDD  105 (134)
T ss_pred             CeEEEccCCCCccccccc----hhcCCCCCcCcCcccCCCc-eEEeecCC--CCcEE-EEEEecCCCCccCcccCC
Confidence            457999999999987764    466666655545554 232 22333332  25544 589999999999965543

This model describes a domain found in PilB, a protein important for pilin expression, N-terminal to a domain coextensive to with the known peptide methionine sulfoxide reductase (MsrA), a protein repair enzyme, of E. coli. Among the early completed genomes, this module is found if and only if MsrA is also found, whether N-terminal to MsrA (as for Helicobacter pylori), C-terminal (as for Treponema pallidum), or in a separate polypeptide. Although the function of this region is not clear, an auxiliary function to MsrA is suggested.

>PRK00222 methionine sulfoxide reductase B; Provisional

Probab=94.25  E-value=0.047  Score=40.41  Aligned_cols=69  Identities=19%  Similarity=0.373  Sum_probs=44.7

Q ss_pred             CCCeEEeccCCCCCCCCCCeeeeceeCCCceEEEeecccccccCCccceeeceecEEEeeeecccCCCceeeeEEe
Q 039667            7 GPRRYSCYRCRNLVSCHEDIVSKGFQASSGRAFLFSHAANIVEGPKEDQHLLTGLHTVADVYCADCGELLGWTYKR   82 (107)
Q Consensus         7 g~~~y~C~~C~thLa~~~~liSk~f~G~~G~AyLf~~v~Nv~~g~~e~r~m~TG~h~V~DI~C~~C~~~lGWkY~~   82 (107)
                      .+-+|.|+.|+++|=+++    ..|....|=.-.+..+-.-.+...+|+  .-|+.. ..|.|..|+..||=-...
T Consensus        40 ~~G~Y~C~~Cg~pLF~S~----~Kf~Sg~GWPSF~~~i~~~~V~~~~D~--s~gm~R-tEv~C~~Cg~HLGHVF~D  108 (142)
T PRK00222         40 EKGIYVCIVCGEPLFSSD----TKFDSGCGWPSFTKPIDEEAIRELRDT--SHGMVR-TEVRCANCDSHLGHVFPD  108 (142)
T ss_pred             CCeEEEecCCCchhcCCc----ccccCCCCCcCcCcccCCCceEEeecc--CCCceE-EEEEeCCCCCccCcccCC
Confidence            345899999999998774    357666776655555532222223332  223332 579999999999976654

>PRK05508 methionine sulfoxide reductase B; Provisional

Probab=92.90  E-value=0.14  Score=36.99  Aligned_cols=65  Identities=23%  Similarity=0.481  Sum_probs=43.7

Q ss_pred             CCCeEEeccCCCCCCCCCCeeeeceeCCCceEEEeecccccccCCccceeeceecEEEeeeecccCCCceeeeEE
Q 039667            7 GPRRYSCYRCRNLVSCHEDIVSKGFQASSGRAFLFSHAANIVEGPKEDQHLLTGLHTVADVYCADCGELLGWTYK   81 (107)
Q Consensus         7 g~~~y~C~~C~thLa~~~~liSk~f~G~~G~AyLf~~v~Nv~~g~~e~r~m~TG~h~V~DI~C~~C~~~lGWkY~   81 (107)
                      .+-+|.|+.|+++|=++++    .|....|=.-.+..+-|. +...+|..   | + =..|.|..|+..||=-..
T Consensus        30 ~~G~Y~C~~Cg~pLF~S~~----KfdSg~GWPSF~~~i~~~-v~~~~D~~---~-~-RtEv~C~~C~~HLGHVF~   94 (119)
T PRK05508         30 EKGTYVCKQCGAPLYRSED----KFKSGCGWPSFDDEIKGA-VKRIPDAD---G-R-RTEIVCANCGGHLGHVFE   94 (119)
T ss_pred             CCeEEEecCCCCccccccc----cccCCCCCcccCcccccc-eEEEecCC---C-c-EEEEEeCCCCCccCcccC
Confidence            3458999999999987764    566666655555555432 23334433   2 2 367999999999996543

>PRK05550 bifunctional methionine sulfoxide reductase B/A protein; Provisional

Probab=91.24  E-value=0.16  Score=41.22  Aligned_cols=64  Identities=27%  Similarity=0.520  Sum_probs=43.2

Q ss_pred             CCeEEeccCCCCCCCCCCeeeeceeCCCceEEEeecccccccCCccceeeceecEEEeeeecccCCCceeeeEE
Q 039667            8 PRRYSCYRCRNLVSCHEDIVSKGFQASSGRAFLFSHAANIVEGPKEDQHLLTGLHTVADVYCADCGELLGWTYK   81 (107)
Q Consensus         8 ~~~y~C~~C~thLa~~~~liSk~f~G~~G~AyLf~~v~Nv~~g~~e~r~m~TG~h~V~DI~C~~C~~~lGWkY~   81 (107)
                      +-+|.|+.|+++|=++++    .|....|=.-.+..+.|... ..++..   |+  =..|.|..|++.||--..
T Consensus        34 ~G~y~c~~c~~~LF~s~~----Kf~sg~GWPsF~~~~~~~~~-~~~d~~---~~--R~Ev~c~~c~~HLGHvF~   97 (283)
T PRK05550         34 KGVYLCRRCGAPLFRSED----KFNSGCGWPSFDDEIPGAVK-RLPDAD---GR--RTEIVCANCGAHLGHVFE   97 (283)
T ss_pred             CcEEEcCCCCchhcCChh----hccCCCCCcCcCcccCCccE-EEEcCC---Cc--eEEEEecCCCCccCcccC
Confidence            458999999999988654    56666665554666544322 222222   33  478999999999996654

>PRK14018 trifunctional thioredoxin/methionine sulfoxide reductase A/B protein; Provisional

Probab=90.55  E-value=0.29  Score=42.60  Aligned_cols=70  Identities=11%  Similarity=0.140  Sum_probs=46.1

Q ss_pred             CCCeEEeccCCCCCCCCCCeeeeceeCCCceEEEeecccccccCCccceeeceecEEEeeeecccCCCceeeeEEee
Q 039667            7 GPRRYSCYRCRNLVSCHEDIVSKGFQASSGRAFLFSHAANIVEGPKEDQHLLTGLHTVADVYCADCGELLGWTYKRA   83 (107)
Q Consensus         7 g~~~y~C~~C~thLa~~~~liSk~f~G~~G~AyLf~~v~Nv~~g~~e~r~m~TG~h~V~DI~C~~C~~~lGWkY~~A   83 (107)
                      .+-+|.|+.|+++|=+++    ..|....|=.-.+..+-+-.+...+|.+  -|++. ..|.|..|+..||--....
T Consensus       415 ~~G~y~c~~c~~pLf~s~----~Kf~sg~GWPsF~~~i~~~~v~~~~d~s--~g~~R-~Ev~c~~c~~HLGHvf~dg  484 (521)
T PRK14018        415 KPGIYVDVVSGEPLFSSA----DKYDSGCGWPSFTRPIDAKVVTEHDDFS--YNMRR-TEVRSRAADSHLGHVFPDG  484 (521)
T ss_pred             CCEEEEecCCCCccccCc----ccccCCCCCcccCcccCcCceEEeeccC--CCceE-EEEEECCCCCcCCcccCCC
Confidence            345899999999998875    4566666665555554332233333332  24544 3899999999999766543

>COG0229 Conserved domain frequently associated with peptide methionine sulfoxide reductase [Posttranslational modification, protein turnover, chaperones]

Probab=87.81  E-value=0.8  Score=33.96  Aligned_cols=66  Identities=26%  Similarity=0.453  Sum_probs=44.6

Q ss_pred             CCeEEeccCCCCCCCCCCeeeeceeCCCceEEEeecccccccCCccceeeceecEEEeeeecccCCCceeeeE
Q 039667            8 PRRYSCYRCRNLVSCHEDIVSKGFQASSGRAFLFSHAANIVEGPKEDQHLLTGLHTVADVYCADCGELLGWTY   80 (107)
Q Consensus         8 ~~~y~C~~C~thLa~~~~liSk~f~G~~G~AyLf~~v~Nv~~g~~e~r~m~TG~h~V~DI~C~~C~~~lGWkY   80 (107)
                      +-+|.|+.|..+|=.+++    .|....|=--.+.-+..-.+...+|+  .-|++.+ .|.|..|++.||=-.
T Consensus        40 ~GiY~c~~cg~pLF~S~~----KfdSgcGWPSF~~pi~~~~I~~~~D~--S~gM~Rt-EVrc~~c~sHLGHVF  105 (140)
T COG0229          40 KGIYVCIVCGEPLFSSED----KFDSGCGWPSFTKPISPDAITYKEDR--SHGMVRT-EVRCANCDSHLGHVF  105 (140)
T ss_pred             CceEEeecCCCccccccc----cccCCCCCccccccCCcccceEeecc--CCCcEEE-EEEecCCCCcccccc
Confidence            458999999999987764    46555555444555544444444444  3456554 799999999999433

>PF14976 FAM72: FAM72 protein

Probab=84.39  E-value=2.1  Score=32.13  Aligned_cols=62  Identities=21%  Similarity=0.433  Sum_probs=38.4

Q ss_pred             eEEeccCCCCCCCCCCeeeeceeCCCceEEEeeccccccc----CCccceeeceec--------EEEeeeecccCCCcee
Q 039667           10 RYSCYRCRNLVSCHEDIVSKGFQASSGRAFLFSHAANIVE----GPKEDQHLLTGL--------HTVADVYCADCGELLG   77 (107)
Q Consensus        10 ~y~C~~C~thLa~~~~liSk~f~G~~G~AyLf~~v~Nv~~----g~~e~r~m~TG~--------h~V~DI~C~~C~~~lG   77 (107)
                      +..|+.|++-|+...           =||.|..+ .|+..    -||....-.+|.        =.++|+-|..|+..||
T Consensus        15 ~L~C~~C~~~l~~Rg-----------MkAvLLad-t~ieLySTD~~P~~~v~~vg~~y~t~~C~C~~~d~aC~~CGn~vG   82 (150)
T PF14976_consen   15 ILCCKFCDQVLCNRG-----------MKAVLLAD-TNIELYSTDIPPTNCVDFVGSCYFTRTCKCKIQDIACLGCGNIVG   82 (150)
T ss_pred             EEECCCCCchhccch-----------hhheeecC-CccEEEecCCCCcccccccccceecccCceEeeeeeeecCCCeee
Confidence            367999998887543           23444443 33321    122222223333        3899999999999999


Q ss_pred             eeEEee
Q 039667           78 WTYKRA   83 (107)
Q Consensus        78 WkY~~A   83 (107)
                      +.....
T Consensus        83 YhV~~P   88 (150)
T PF14976_consen   83 YHVVVP   88 (150)
T ss_pred             eEEEEE
Confidence            887654

>KOG0856 consensus Predicted pilin-like transcription factor [Posttranslational modification, protein turnover, chaperones]

Probab=80.37  E-value=1.8  Score=32.34  Aligned_cols=66  Identities=24%  Similarity=0.436  Sum_probs=39.9

Q ss_pred             CCeEEeccCCCCCCCCCCeeeeceeCCCceEEEeecccccccCCccceee-ceecEEEeeeecccCCCceeeeEE
Q 039667            8 PRRYSCYRCRNLVSCHEDIVSKGFQASSGRAFLFSHAANIVEGPKEDQHL-LTGLHTVADVYCADCGELLGWTYK   81 (107)
Q Consensus         8 ~~~y~C~~C~thLa~~~~liSk~f~G~~G~AyLf~~v~Nv~~g~~e~r~m-~TG~h~V~DI~C~~C~~~lGWkY~   81 (107)
                      +-+|.|..|.++|=.++    .-|.-..|=--.|+.+-   .|..-.+.. .-|.+ =.+|.|..|+..||--.+
T Consensus        52 ~GvY~C~~C~~pLykS~----tKfdsgcGWPAF~e~i~---~gaI~r~~d~s~~~~-R~Ev~Ca~C~~HLGHVF~  118 (146)
T KOG0856|consen   52 EGVYVCAGCGTPLYKST----TKFDSGCGWPAFFEAIG---PGAITRTPDNSRGGR-RTEVSCATCGGHLGHVFK  118 (146)
T ss_pred             CceEEEeecCCcccccc----ccccCCCCCchhhhccC---CCceeeccccCCCCc-ceEEEEeecCCceeeeec
Confidence            45899999999997764    35666666444444431   121111111 11222 358999999999996554

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	107
3eqt_A	145	ATP-dependent RNA helicase DHX58; innate immunity,	95.07
3ga3_A	133	Interferon-induced helicase C domain-containing pr	95.04
3lrr_A	121	Probable ATP-dependent RNA helicase DDX58; innate	94.04
2qfd_A	145	Probable ATP-dependent RNA helicase DDX58; zinc fi	93.25
3e0o_A	144	Peptide methionine sulfoxide reductase MSRB; oxido	93.2
4a2v_A	131	RIG-I, retinoic acid inducible protein I; hydrolas	92.86
3hcg_A	146	Peptide methionine sulfoxide reductase MSRA/MSRB;	92.48
2kv1_A	124	Methionine-R-sulfoxide reductase B1; MSRB1, SELR,	92.33
2kao_A	124	Methionine-R-sulfoxide reductase B1; mouse reduced	91.93
3cxk_A	164	Methionine-R-sulfoxide reductase; structural genom	91.66
2k8d_A	151	Peptide methionine sulfoxide reductase MSRB; therm	90.74
3mao_A	105	Methionine-R-sulfoxide reductase B1; oxidoreductas	90.27
3hcj_A	154	MSRB, peptide methionine sulfoxide reductase; meth	88.6
3e0m_A	313	Peptide methionine sulfoxide reductase MSRA/MSRB 1	88.18
2l1u_A	143	MSRB2, methionine-R-sulfoxide reductase B2, mitoch	83.8

>3eqt_A ATP-dependent RNA helicase DHX58; innate immunity, RIG-I-like helicases, viral RNA detection, LGP2/dsRNA complex, ATP-binding, coiled coil; 2.00A {Homo sapiens} PDB: 2w4r_A 2rqa_A

Probab=95.07  E-value=0.011  Score=42.81  Aligned_cols=93  Identities=17%  Similarity=0.255  Sum_probs=54.9

Q ss_pred             CCCeEEeccCCCCCCCCCCeeee--ceeCCCceEEEeecccccccCCccceeeceecEEEeeeecccCCCceeeeEEeec
Q 039667            7 GPRRYSCYRCRNLVSCHEDIVSK--GFQASSGRAFLFSHAANIVEGPKEDQHLLTGLHTVADVYCADCGELLGWTYKRAF   84 (107)
Q Consensus         7 g~~~y~C~~C~thLa~~~~liSk--~f~G~~G~AyLf~~v~Nv~~g~~e~r~m~TG~h~V~DI~C~~C~~~lGWkY~~A~   84 (107)
                      ..-.+.|++|.+.++..+||-.-  +-+=.-+++|  ...+.+..+|..-.....+...-..|.|.+|+..+|-....--
T Consensus        10 s~vkllCrkC~~~~C~g~DIr~ie~~HhVnv~p~F--~~~y~~~~~~~~~~k~f~d~~~~g~I~C~~Cgq~WG~~m~yk~   87 (145)
T 3eqt_A           10 EHVQLLCINCMVAVGHGSDLRKVEGTHHVNVNPNF--SNYYNVSRDPVVINKVFKDWKPGGVISCRNCGEVWGLQMIYKS   87 (145)
T ss_dssp             GGCEEEETTTCCEEEEGGGEEEETTTEEEECCGGG--GGGEEEEEEECCCSSCCSSEEEEEEEEETTTCCEEEEEEEETT
T ss_pred             hheEEECCCCCeeEEeccceEEeccceEEeeChhh--eeeEEeccCCCCCCcccccccCCcEEEchhhChhhHhhEEecc
Confidence            34469999999999999997433  1111111111  2233332222211111344566788999999999997765543


Q ss_pred             ccccccccccEEEEecc
Q 039667           85 EESQKYKEGKIVLEKFK  101 (107)
Q Consensus        85 e~sqkYKEGkfIlE~~~  101 (107)
                      -+==-.|.-.|++|-..
T Consensus        88 ~~LP~LkIksFVve~~~  104 (145)
T 3eqt_A           88 VKLPVLKVRSMLLETPQ  104 (145)
T ss_dssp             EEEEEECGGGEEEEETT
T ss_pred             ccCceEeEEEEEEEcCC
Confidence            33445677788887643

>3ga3_A Interferon-induced helicase C domain-containing protein 1, MDA5; innate immune receptor, RNA biniding, RLR, alternative splicing, antiviral defense; 1.45A {Homo sapiens} PDB: 2rqb_A

Probab=95.04  E-value=0.026  Score=40.27  Aligned_cols=87  Identities=16%  Similarity=0.205  Sum_probs=54.5

Q ss_pred             eEEeccCCCCCCCCCCeeee--ceeCCCceEEEeecccccccCCccceeeceecEEEeeeecccCCCceeeeEEeecccc
Q 039667           10 RYSCYRCRNLVSCHEDIVSK--GFQASSGRAFLFSHAANIVEGPKEDQHLLTGLHTVADVYCADCGELLGWTYKRAFEES   87 (107)
Q Consensus        10 ~y~C~~C~thLa~~~~liSk--~f~G~~G~AyLf~~v~Nv~~g~~e~r~m~TG~h~V~DI~C~~C~~~lGWkY~~A~e~s   87 (107)
                      .+.|++|.+.+++.+||-.-  +-.=.-+++|  ...+.+..-+...+. ..+...-..|.|. |+..+|-....---+=
T Consensus        12 kllCrkC~~~~C~g~DIR~ie~~HhVnv~p~F--~~~y~~~~~~~~~k~-f~d~~~~g~I~C~-Cgq~WG~~m~yk~~~L   87 (133)
T 3ga3_A           12 TFLCKNCSVLACSGEDIHVIEKMHHVNMTPEF--KELYIVRENKALQKK-CADYQINGEIICK-CGQAWGTMMVHKGLDL   87 (133)
T ss_dssp             EEEETTTCCEEEEGGGCEEETTTEEECCCTGG--GGSEEEECCTTTCEE-CSSCEEEEEEEET-TSCEEEEEEEETTEEE
T ss_pred             EEEccCCCeeEEeccceEEeccceEEeeChhh--eeeEEecCCCCccch-hccccCCceEEEe-cCChhhhhEEeccccC
Confidence            58999999999999997432  2221122222  233444422222233 4667788899999 9999997765443334


Q ss_pred             cccccccEEEEec
Q 039667           88 QKYKEGKIVLEKF  100 (107)
Q Consensus        88 qkYKEGkfIlE~~  100 (107)
                      =-.|.-.|++|-.
T Consensus        88 P~LkIksFVve~~  100 (133)
T 3ga3_A           88 PCLKIRNFVVVFK  100 (133)
T ss_dssp             EEECGGGEEEEET
T ss_pred             ceEEEEEEEEEcC
Confidence            4567777877763

>3lrr_A Probable ATP-dependent RNA helicase DDX58; innate immunity, viral RNA, RIG-I like receptors, antiviral ATP-binding, helicase, hydrolase; HET: ATP; 2.15A {Homo sapiens} PDB: 3lrn_A* 3og8_A 2rmj_A 3ncu_A*

Probab=94.04  E-value=0.026  Score=39.54  Aligned_cols=89  Identities=21%  Similarity=0.374  Sum_probs=55.4

Q ss_pred             CCCeEEeccCCCCCCCCCCeee--eceeCCCceEEEeecccccccCCccceeeceecEEEeeeecc--cCCCceeeeEEe
Q 039667            7 GPRRYSCYRCRNLVSCHEDIVS--KGFQASSGRAFLFSHAANIVEGPKEDQHLLTGLHTVADVYCA--DCGELLGWTYKR   82 (107)
Q Consensus         7 g~~~y~C~~C~thLa~~~~liS--k~f~G~~G~AyLf~~v~Nv~~g~~e~r~m~TG~h~V~DI~C~--~C~~~lGWkY~~   82 (107)
                      |...+.|++|.+.+++.+||-.  .+-+=.-+++|  ...+.+...+. .+. .-+.+.-..|.|.  +|++.+|-....
T Consensus         2 ~~~~llC~kC~~~~C~g~DIr~ie~~HhVnv~p~F--~~~y~~~~~~~-~k~-f~d~~~~g~I~C~~~~Cg~~WG~~m~y   77 (121)
T 3lrr_A            2 ENKKLLCRKCKALACYTADVRVIEESHYTVLGDAF--KECFVSRPHPK-PKQ-FSSFEKRAKIFCARQNCSHDWGIHVKY   77 (121)
T ss_dssp             CCEEEEETTTCCEEEEGGGEEEETTTEEEECSHHH--HTTEEEEECSS-CCE-ETTEEEEEEEEECSTTTCCEEEEEEEE
T ss_pred             CCEEEECCCCCeEEEeccceEEeecceEEeeChhh--eeeEEecCCCC-Cch-hhcccCCcEEEeCccccChhhhheEEe
Confidence            5667999999999999999733  22111112221  22233322222 222 2356778889999  999999977655


Q ss_pred             ecccccccccccEEEEe
Q 039667           83 AFEESQKYKEGKIVLEK   99 (107)
Q Consensus        83 A~e~sqkYKEGkfIlE~   99 (107)
                      ---+==-.|.-.|++|-
T Consensus        78 k~~~LP~LkI~sfvve~   94 (121)
T 3lrr_A           78 KTFEIPVIKIESFVVED   94 (121)
T ss_dssp             TTEEEEEECGGGEEEEE
T ss_pred             ccccCceEEEEEEEEEe
Confidence            43334456777888876

>2qfd_A Probable ATP-dependent RNA helicase DDX58; zinc finger, alternative splicing, antiviral defense, ATP- binding, hydrolase, immune response; 2.70A {Homo sapiens} PDB: 2qfb_A

Probab=93.25  E-value=0.11  Score=37.49  Aligned_cols=81  Identities=22%  Similarity=0.420  Sum_probs=53.3

Q ss_pred             CCCeEEeccCCCCCCCCCCe----------eeeceeCCCceEEEeecccccccCCccceeeceecEEEeeeecc--cCCC
Q 039667            7 GPRRYSCYRCRNLVSCHEDI----------VSKGFQASSGRAFLFSHAANIVEGPKEDQHLLTGLHTVADVYCA--DCGE   74 (107)
Q Consensus         7 g~~~y~C~~C~thLa~~~~l----------iSk~f~G~~G~AyLf~~v~Nv~~g~~e~r~m~TG~h~V~DI~C~--~C~~   74 (107)
                      +.-.+.|++|.+.+++.+||          +.+.|.          ..+.+..-+...+  .-+...-..|+|.  +|+.
T Consensus        24 ~~v~llCrkC~~~~C~g~DIrvie~~HhV~v~p~F~----------~~y~v~~~~~~k~--f~d~~~~g~I~C~~~~Cg~   91 (145)
T 2qfd_A           24 ENKKLLCRKCKALACYTADVRVIEECHYTVLGDAFK----------ECFVSRPHPKPKQ--FSSFEKRAKIFCARQNCSH   91 (145)
T ss_dssp             CCCEEEETTTCCEEEEGGGEEEETTTEEEECSTTGG----------GTEEEEECSSCCC--CSSEEEEEEEEECSTTTCC
T ss_pred             cceEEEccCCCeeEEcccceeEecCCcEEecCcCce----------eeEEEcCCcccch--hhceeCCceEEeCCcccCc
Confidence            34459999999999999998          334443          2222221111111  4445677899999  9999


Q ss_pred             ceeeeEEeecccccccccccEEEEe
Q 039667           75 LLGWTYKRAFEESQKYKEGKIVLEK   99 (107)
Q Consensus        75 ~lGWkY~~A~e~sqkYKEGkfIlE~   99 (107)
                      .+|-.-..---+-=-.|.-.|+||.
T Consensus        92 ~WG~~m~yk~~~lP~LkIksFVv~~  116 (145)
T 2qfd_A           92 DWGIHVKYKTFEIPVIKIESFVVED  116 (145)
T ss_dssp             EEEEEEEETTEEEEEECGGGEEEEC
T ss_pred             chhceEEEccccCceEEEEEEEEEe
Confidence            9997665433334456778888885

>3e0o_A Peptide methionine sulfoxide reductase MSRB; oxidoreductase; 2.60A {Bacillus subtilis} SCOP: b.88.1.3 PDB: 1xm0_A 2kzn_A

Probab=93.20  E-value=0.031  Score=40.45  Aligned_cols=67  Identities=15%  Similarity=0.170  Sum_probs=43.2

Q ss_pred             CCeEEeccCCCCCCCCCCeeeeceeCCCceEEEeecccccccCCccceeeceecEEEeeeecccCCCceeeeEEe
Q 039667            8 PRRYSCYRCRNLVSCHEDIVSKGFQASSGRAFLFSHAANIVEGPKEDQHLLTGLHTVADVYCADCGELLGWTYKR   82 (107)
Q Consensus         8 ~~~y~C~~C~thLa~~~~liSk~f~G~~G~AyLf~~v~Nv~~g~~e~r~m~TG~h~V~DI~C~~C~~~lGWkY~~   82 (107)
                      +-+|.|+.|.++|=++++    .|....|=--.+..+-+ .+...+|++  -|+.. ..|.|..|+..||=-...
T Consensus        40 ~G~Y~C~~Cg~pLF~S~~----KfdSg~GWPSF~~pi~~-~v~~~~D~s--~gm~R-tEV~C~~Cg~HLGHVF~D  106 (144)
T 3e0o_A           40 EGLYVDIVSGKPLFTSKD----KFDSQCGWPSFTKPIEE-EVEEKLDTS--HGMIR-TEVRSRTADSHLGHVFND  106 (144)
T ss_dssp             SEEEEETTTCCEEEETTT----BCCCTTSSCEESCCSTT-TEEEEEECC--TTSCE-EEEEETTTCCEEEEEESC
T ss_pred             CEEEEeCCCCcccccCcc----cccCCCCCcccCchhcc-ceEEeecCC--CCceE-EEEEcCCCCCccCCccCC
Confidence            457999999999877653    46655665444444444 333334432  24433 479999999999966643

>4a2v_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 1.44A {Anas platyrhynchos} PDB: 4a2x_A

Probab=92.86  E-value=0.062  Score=38.17  Aligned_cols=89  Identities=21%  Similarity=0.368  Sum_probs=51.9

Q ss_pred             CCCeEEeccCCCCCCCCCCeee--eceeCCCceEEEeecccccccCCccceeeceecEEEeeeecc--cCCCceeeeEEe
Q 039667            7 GPRRYSCYRCRNLVSCHEDIVS--KGFQASSGRAFLFSHAANIVEGPKEDQHLLTGLHTVADVYCA--DCGELLGWTYKR   82 (107)
Q Consensus         7 g~~~y~C~~C~thLa~~~~liS--k~f~G~~G~AyLf~~v~Nv~~g~~e~r~m~TG~h~V~DI~C~--~C~~~lGWkY~~   82 (107)
                      |...+.|++|.+.+++.+||-.  .+-+=.-+++|  ...+.+..-+. .+. .-+.+.-..|.|.  +|++.+|-....
T Consensus         4 ~~~kllCrkC~~~vC~g~DIr~ie~~HhVnv~p~F--~~~y~~~~~~~-~k~-f~d~~~~g~I~C~~~~Cg~~WG~~m~y   79 (131)
T 4a2v_A            4 GQKNLLCGKCKAYACSTDDIRIIKDSHHIVLGEAF--KERYTTKPHKK-PMQ-FDGFEKKSKMYCRNNNCQHDWGITVKY   79 (131)
T ss_dssp             -CCEEEETTTCCEEEEGGGEEEETTTEEEECSSGG--GGGEEEEECCC-CCC-TTSEEEEEEEEESCTTTCCEEEEEEEE
T ss_pred             cceEEEccCCCeeEEeccceEEeecceEEeeChhh--eeeEEecCCCC-Cch-hhcccCCcEEEeCccccChhhhhhEee
Confidence            4567999999999999999733  22111111111  12222222221 121 2355678889999  999998876543


Q ss_pred             eccc-ccccccccEEEEe
Q 039667           83 AFEE-SQKYKEGKIVLEK   99 (107)
Q Consensus        83 A~e~-sqkYKEGkfIlE~   99 (107)
                      ---+ ==-.|.-.|++|-
T Consensus        80 k~~~~LP~LkIksFVve~   97 (131)
T 4a2v_A           80 LTFDNLPVIKIKSFVMES   97 (131)
T ss_dssp             TTEEEEEEECGGGEEECC
T ss_pred             cCcccCceEeEEEEEEEe
Confidence            2222 2246777788775

>3hcg_A Peptide methionine sulfoxide reductase MSRA/MSRB; PILB, methionine sulfoxide reductase B, reduced form, disulfide bond; 1.82A {Neisseria meningitidis serogroup A} SCOP: b.88.1.3 PDB: 3hch_A* 1l1d_A

Probab=92.48  E-value=0.057  Score=39.11  Aligned_cols=68  Identities=10%  Similarity=0.125  Sum_probs=42.7

Q ss_pred             CCeEEeccCCCCCCCCCCeeeeceeCCCceEEEeecccccccCCccceeeceecEEEeeeecccCCCceeeeEEe
Q 039667            8 PRRYSCYRCRNLVSCHEDIVSKGFQASSGRAFLFSHAANIVEGPKEDQHLLTGLHTVADVYCADCGELLGWTYKR   82 (107)
Q Consensus         8 ~~~y~C~~C~thLa~~~~liSk~f~G~~G~AyLf~~v~Nv~~g~~e~r~m~TG~h~V~DI~C~~C~~~lGWkY~~   82 (107)
                      +-+|.|+.|.++|=+++    ..|....|=.-.+..+-.-.+...+|++  -|+.. ..|.|..|+..||=-...
T Consensus        41 ~G~Y~C~~Cg~pLF~S~----~KFdSg~GWPSF~~pi~~~~v~~~~D~s--~gm~R-tEV~C~~Cg~HLGHVF~D  108 (146)
T 3hcg_A           41 PGIYVDVVSGEPLFSSA----DKYDSGCGWPSFTRPIDAKSVTEHDDFS--YNMRR-TEVRSHAADSHLGHVFPD  108 (146)
T ss_dssp             SEEEEETTTCCEEEEGG----GEECCSSSSCEESSCSSGGGEEEEEEEE--TTEEE-EEEEETTTCCEEEEEESC
T ss_pred             CEEEEecCCCcccccCc----ccccCCCCChhhccccCCCceEEeecCC--CCcEE-EEEEeCCCCCccCceeCC
Confidence            45899999999987665    3566666654445444221122233433  24433 478999999999966644

>2kv1_A Methionine-R-sulfoxide reductase B1; MSRB1, SELR, metal-binding, nucleus, oxidoreductase, seleniu; NMR {Mus musculus}

Probab=92.33  E-value=0.078  Score=37.46  Aligned_cols=65  Identities=18%  Similarity=0.317  Sum_probs=38.3

Q ss_pred             CCeEEeccCCCCCCCCCCeeeeceeCCCceEEEeecccccccCCccceeeceecEEEeeeecccCCCceeeeE
Q 039667            8 PRRYSCYRCRNLVSCHEDIVSKGFQASSGRAFLFSHAANIVEGPKEDQHLLTGLHTVADVYCADCGELLGWTY   80 (107)
Q Consensus         8 ~~~y~C~~C~thLa~~~~liSk~f~G~~G~AyLf~~v~Nv~~g~~e~r~m~TG~h~V~DI~C~~C~~~lGWkY   80 (107)
                      +-+|.|+.|.++|=++++=    |....|=.-.+..+-.-.+-..+++   .|.. ...|.|+.|+..||=-.
T Consensus        18 ~G~Y~C~~Cg~pLF~S~~K----fdSg~GWPSF~~~i~~~~v~~~~d~---~~~~-r~Ev~C~~Cg~HLGHVF   82 (124)
T 2kv1_A           18 PGVYVCAKCSYELFSSHSK----YAHSSPWPAFTETIHPDSVTKCPEK---NRPE-ALKVSCGKCGNGLGHEF   82 (124)
T ss_dssp             CEEEEETTTCCBCCCTTSC----CCCCSSSCCBSCCCCCSSCEEEECS---SSTT-CEEEECTTTTCCCEEEC
T ss_pred             CEEEEecCCCCcccccCCc----ccCCCCCceeecccccceEEEEecc---CCce-EEEEEEecCCCccCCcc
Confidence            3589999999999887653    5555554333333321111111222   1221 35799999999999544

>3cxk_A Methionine-R-sulfoxide reductase; structural genomics, MSRB, oxidoreductase, MIC labcard, PSI-2, protein structure initiative; 1.70A {Burkholderia pseudomallei strain} PDB: 3cez_A

Probab=91.66  E-value=0.053  Score=39.95  Aligned_cols=67  Identities=22%  Similarity=0.444  Sum_probs=42.5

Q ss_pred             CCeEEeccCCCCCCCCCCeeeeceeCCCceEEEeecccccccCCccceeeceecEEEeeeecccCCCceeeeEE
Q 039667            8 PRRYSCYRCRNLVSCHEDIVSKGFQASSGRAFLFSHAANIVEGPKEDQHLLTGLHTVADVYCADCGELLGWTYK   81 (107)
Q Consensus         8 ~~~y~C~~C~thLa~~~~liSk~f~G~~G~AyLf~~v~Nv~~g~~e~r~m~TG~h~V~DI~C~~C~~~lGWkY~   81 (107)
                      .-+|.|+.|.++|=.+++    .|....|=.-.+..+-+-.+...+|+.  -|+. -..|.|..|+..||=-..
T Consensus        71 ~GiY~C~~Cg~pLF~S~~----KFdSGcGWPSF~~pi~~~~V~~~~D~s--~gm~-RtEV~C~~Cg~HLGHVF~  137 (164)
T 3cxk_A           71 AGIYHCVVCGTALFESGA----KYHSGCGWPSYFKPIDGEVIDEKMDYT--HGMT-RVEVRCNQCGAHLGHVFE  137 (164)
T ss_dssp             SEEEEETTTCCEEEEGGG----BCCCCSSSCEESSCSSTTSEEEEEECG--GGCC-EEEEEETTTCCEEEEEES
T ss_pred             CeEEEccCCCccccCCch----hccCCCCCcccCcccCCCceEEeECCC--CCcE-EEEEEeCCCCCccCcccC
Confidence            348999999999877653    466556655445444322222333332  2443 447999999999996554

>2k8d_A Peptide methionine sulfoxide reductase MSRB; thermophilic, Zn binding, metal-binding, oxidoreductase; NMR {Methanothermobacter thermautotrophicusorganism_taxid}

Probab=90.74  E-value=0.049  Score=39.67  Aligned_cols=68  Identities=22%  Similarity=0.447  Sum_probs=43.1

Q ss_pred             CCeEEeccCCCCCCCCCCeeeeceeCCCceEEEeecccccccCCccceeeceecEEEeeeecccCCCceeeeEEe
Q 039667            8 PRRYSCYRCRNLVSCHEDIVSKGFQASSGRAFLFSHAANIVEGPKEDQHLLTGLHTVADVYCADCGELLGWTYKR   82 (107)
Q Consensus         8 ~~~y~C~~C~thLa~~~~liSk~f~G~~G~AyLf~~v~Nv~~g~~e~r~m~TG~h~V~DI~C~~C~~~lGWkY~~   82 (107)
                      .-+|.|+.|.++|=++++    .|....|=.-.+..+-.-.+...+|+.  -|+.. ..|.|..|+..||--...
T Consensus        59 ~G~Y~C~~Cg~pLF~S~~----KFdSg~GWPSF~~pi~~~~V~~~~D~s--~gm~R-tEV~C~~Cg~HLGHVF~D  126 (151)
T 2k8d_A           59 DGIYRCICCGTDLFDSET----KFDSGTGWPSFYDVVSEHNIKLREDRS--LGMVR-CEVLCARCDAHLGHVFDD  126 (151)
T ss_dssp             CSEEEETTTTEEEEEGGG----SCCSTTCCSEESCCSCTTSEECCCCBT--TSSCE-EEEEETTEEEEEEEEEEC
T ss_pred             CEEEEecCCCCcccCCcc----cccCCCCCcccCcccCCCceEEeeCCC--CCceE-EEEEeCCCCCcCCcccCC
Confidence            458999999999876653    576666654445544321222333332  24433 479999999999966654

>3mao_A Methionine-R-sulfoxide reductase B1; oxidoreductase, structural genomics consortium, SGC, cytoplasm, metal-binding, nucleus, selenocysteine, zinc; HET: MLI; 1.42A {Homo sapiens}

Probab=90.27  E-value=0.092  Score=36.09  Aligned_cols=65  Identities=18%  Similarity=0.355  Sum_probs=39.2

Q ss_pred             CCeEEeccCCCCCCCCCCeeeeceeCCCceEEEeecccccccCCccceeeceecEEEeeeecccCCCceeeeE
Q 039667            8 PRRYSCYRCRNLVSCHEDIVSKGFQASSGRAFLFSHAANIVEGPKEDQHLLTGLHTVADVYCADCGELLGWTY   80 (107)
Q Consensus         8 ~~~y~C~~C~thLa~~~~liSk~f~G~~G~AyLf~~v~Nv~~g~~e~r~m~TG~h~V~DI~C~~C~~~lGWkY   80 (107)
                      +-+|.|+.|.++|=.+++    .|....|=.-.+..+-.-.+...++.   .++ .-..|.|..|+..||--.
T Consensus        11 ~G~Y~C~~Cg~pLF~S~~----KFdSg~GWPSF~~pi~~~~v~~~~D~---~~~-~RtEV~C~~C~~HLGHVF   75 (105)
T 3mao_A           11 PGVYVCAKCGYELFSSRS----KYAHSSPWPAFTETIHADSVAKRPEH---NRS-EALKVSCGKCGNGLGHEF   75 (105)
T ss_dssp             SEEEEETTTCCEEEEGGG----EECCSSSSCEESCCSSTTSEEEEECT---TST-TEEEEEETTTCCEEEEEE
T ss_pred             CEEEEcCCCCCccccCCc----ccCCCCCChhhccccCCCceEEEecC---CCC-CEEEEEeCCCCCccCccc
Confidence            447999999999866653    46655565444444321111111121   121 236899999999999665

>3hcj_A MSRB, peptide methionine sulfoxide reductase; methionine sulfoxide reductase B, oxidized form, oxidoreductase; 1.66A {Xanthomonas campestris PV} PDB: 3hci_A*

Probab=88.60  E-value=0.051  Score=39.69  Aligned_cols=68  Identities=19%  Similarity=0.383  Sum_probs=39.4

Q ss_pred             CCeEEeccCCCCCCCCCCeeeeceeCCCceEEEeecccccccCCccceeeceecEEEeeeecccCCCceeeeEEe
Q 039667            8 PRRYSCYRCRNLVSCHEDIVSKGFQASSGRAFLFSHAANIVEGPKEDQHLLTGLHTVADVYCADCGELLGWTYKR   82 (107)
Q Consensus         8 ~~~y~C~~C~thLa~~~~liSk~f~G~~G~AyLf~~v~Nv~~g~~e~r~m~TG~h~V~DI~C~~C~~~lGWkY~~   82 (107)
                      .-+|.|+.|.++|=.+++    .|....|=--.+..+-.-.+...+|.+  -|+.. ..|.|..|+..||=-...
T Consensus        48 ~G~Y~C~~Cg~pLF~S~~----KFdSg~GWPSF~~pi~~~~v~~~~D~s--~gm~R-tEV~C~~Cg~HLGHVF~D  115 (154)
T 3hcj_A           48 DGVYTCRLCGLPLFRSNA----KFDSGTGWPSFFAPYDPAHVREIRDTS--YGMIR-TEIVCARCDSHLGHVFPD  115 (154)
T ss_dssp             SEEEEETTTCCEEEEECT----TCCCCTTSSTTEEESCGGGEEEECCTT--TTTSC-EEEEETTTCCEEEEEESC
T ss_pred             CEEEEccCCCCccccCcc----cccCCCCCcccccccCccceEEeecCC--CCceE-EEEEeCCCCCccCCccCC
Confidence            358999999999976653    455555543333333211111122221  13322 579999999999966543

>3e0m_A Peptide methionine sulfoxide reductase MSRA/MSRB 1; fusion, msrab, linker, hinge, cell membrane, membrane, multifunctional enzyme, oxidoreductase; 2.40A {Streptococcus pneumoniae}

Probab=88.18  E-value=0.15  Score=40.88  Aligned_cols=68  Identities=12%  Similarity=0.099  Sum_probs=42.1

Q ss_pred             CCeEEeccCCCCCCCCCCeeeeceeCCCceEEEeecccccccCCccceeeceecEEEeeeecccCCCceeeeEEe
Q 039667            8 PRRYSCYRCRNLVSCHEDIVSKGFQASSGRAFLFSHAANIVEGPKEDQHLLTGLHTVADVYCADCGELLGWTYKR   82 (107)
Q Consensus         8 ~~~y~C~~C~thLa~~~~liSk~f~G~~G~AyLf~~v~Nv~~g~~e~r~m~TG~h~V~DI~C~~C~~~lGWkY~~   82 (107)
                      +-+|.|+.|.++|=+++    ..|....|=--.+..+-.-.+...+|+++  |+.. ..|.|..|+..||=-...
T Consensus       207 ~G~Y~c~~cg~pLF~S~----~KfdSg~GWPSF~~~i~~~~v~~~~D~s~--gm~R-tEv~c~~c~~HLGHVF~D  274 (313)
T 3e0m_A          207 EGIYVDITTGEPLFFAK----DKFASGCGWPSFSRPLSKELIHYYKDLSH--GMER-IEVRSRSGSAHLGHVFTD  274 (313)
T ss_dssp             SEEEEETTTCCEEEEGG----GBCCCCSSSCEESSCSSGGGEEEEEECCT--TCCE-EEEEESSSCCEEEEEESC
T ss_pred             CeEEEecCCCccccCCC----ccccCCCCCcccCcccCCCceEEeecCCC--CcEE-EEEECCCCCCccCcccCC
Confidence            45899999999986664    35666666544444442211222233321  4432 589999999999966543

>2l1u_A MSRB2, methionine-R-sulfoxide reductase B2, mitochondria; methionine sulfoxide reductase, oxidoreductase; NMR {Mus musculus}

Probab=83.80  E-value=0.25  Score=35.62  Aligned_cols=67  Identities=18%  Similarity=0.305  Sum_probs=39.3

Q ss_pred             CCeEEeccCCCCCCCCCCeeeeceeCCCceEEEeeccccc--------ccCCccceeeceecEEEeeeecccCCCceeee
Q 039667            8 PRRYSCYRCRNLVSCHEDIVSKGFQASSGRAFLFSHAANI--------VEGPKEDQHLLTGLHTVADVYCADCGELLGWT   79 (107)
Q Consensus         8 ~~~y~C~~C~thLa~~~~liSk~f~G~~G~AyLf~~v~Nv--------~~g~~e~r~m~TG~h~V~DI~C~~C~~~lGWk   79 (107)
                      +-+|.|+.|.++|=++++    .|....|=.-.+..+ ++        .+...+|+  .-|+.. ..|.|..|+..||=-
T Consensus        35 ~G~Y~C~~Cg~pLF~S~~----KFdSg~GWPSF~~pi-~~~~~~~~~~~V~~~~D~--s~gm~R-tEV~C~~Cg~HLGHV  106 (143)
T 2l1u_A           35 TGMYHCVCCDSPLFSSEK----KYCSGTGWPSFSEAY-GSKGSDESHTGILRRLDT--SLGCPR-MEVVCKQCEAHLGHV  106 (143)
T ss_dssp             CEEEEESSSSCEEEEGGG----BCTTTTCCSBBSSCC-SCCTTHHHHTCEEEEEEC--TTSSCE-EEEEESSSCCCCEEE
T ss_pred             CeEEEeCCCCCeeecCcc----cccCCCCChhhchhh-ccccccCCCCceEEeecc--cCCceE-EEEEECCCCCcCCcc
Confidence            457999999999876654    465445543333333 11        11112222  123332 479999999999966


Q ss_pred             EEe
Q 039667           80 YKR   82 (107)
Q Consensus        80 Y~~   82 (107)
                      +..
T Consensus       107 F~D  109 (143)
T 2l1u_A          107 FPD  109 (143)
T ss_dssp             ECC
T ss_pred             cCC
Confidence            643

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	107
d1l1da_	144	C-terminal MsrB domain of peptide methionine sulfo	89.92
d1xm0a1	143	Peptide methionine sulfoxide reductase MsrB {Bacil	89.26

>d1l1da_ b.88.1.3 (A:) C-terminal MsrB domain of peptide methionine sulfoxide reductase PilB {Neisseria gonorrhoeae [TaxId: 485]}

class: All beta proteins
fold: Mss4-like
superfamily: Mss4-like
family: SelR domain
domain: C-terminal MsrB domain of peptide methionine sulfoxide reductase PilB
species: Neisseria gonorrhoeae [TaxId: 485]

Probab=89.92  E-value=0.052  Score=37.33  Aligned_cols=69  Identities=12%  Similarity=0.145  Sum_probs=41.7

Q ss_pred             CCeEEeccCCCCCCCCCCeeeeceeCCCceEEEeecccccccCCccceeeceecEEEeeeecccCCCceeeeEEee
Q 039667            8 PRRYSCYRCRNLVSCHEDIVSKGFQASSGRAFLFSHAANIVEGPKEDQHLLTGLHTVADVYCADCGELLGWTYKRA   83 (107)
Q Consensus         8 ~~~y~C~~C~thLa~~~~liSk~f~G~~G~AyLf~~v~Nv~~g~~e~r~m~TG~h~V~DI~C~~C~~~lGWkY~~A   83 (107)
                      .-+|.|+.|.++|=.+++    .|....|=.-.++.+-+-.+....+..  -|+-. ..|.|..|+..||=-....
T Consensus        40 ~G~Y~C~~Cg~pLF~S~~----KfdSg~GWPSF~~~i~~~~v~~~~d~s--~gm~R-~Ev~C~~Cg~HLGHVF~DG  108 (144)
T d1l1da_          40 PGIYVDVVSGEPLFSSAD----KYDSGCGWPSFTRPIDAKSVTEHDDFS--FNMRR-TEVRSRAADSHLGHVFPDG  108 (144)
T ss_dssp             SEEEEETTTCCEEEEGGG----EECCSSSSCEESSCSSTTSEEEEEECC--TTSCE-EEEEETTTCCEEEEEESCS
T ss_pred             cCceEeccccceeeehhh----cccCCccceeeccccccccccceeccc--ccccc-eeeEecCCCCccCcccCCC
Confidence            448999999999976554    365555544334444332222222211  13322 3899999999999666543

>d1xm0a1 b.88.1.3 (A:1-143) Peptide methionine sulfoxide reductase MsrB {Bacillus subtilis [TaxId: 1423]}

class: All beta proteins
fold: Mss4-like
superfamily: Mss4-like
family: SelR domain
domain: Peptide methionine sulfoxide reductase MsrB
species: Bacillus subtilis [TaxId: 1423]

Probab=89.26  E-value=0.057  Score=37.14  Aligned_cols=66  Identities=18%  Similarity=0.218  Sum_probs=39.2

Q ss_pred             CCeEEeccCCCCCCCCCCeeeeceeCCCceEEEeecccccccCCccceeeceecEEEeeeecccCCCceeeeEE
Q 039667            8 PRRYSCYRCRNLVSCHEDIVSKGFQASSGRAFLFSHAANIVEGPKEDQHLLTGLHTVADVYCADCGELLGWTYK   81 (107)
Q Consensus         8 ~~~y~C~~C~thLa~~~~liSk~f~G~~G~AyLf~~v~Nv~~g~~e~r~m~TG~h~V~DI~C~~C~~~lGWkY~   81 (107)
                      .-+|.|+.|+++|=++++    .|.-..|=.-.+..+-+-+. ..+|..  -|+ .=..|.|..|+..||=-..
T Consensus        39 ~G~Y~C~~C~~pLF~S~~----KfdSg~GWPSF~~~i~~~v~-~~~D~s--~gm-~R~Ev~C~~Cg~HLGHVF~  104 (143)
T d1xm0a1          39 EGLYVDIVSGKPLFTSKD----KFDSQCGWPSFTKPIEEEVE-EKLDTS--HGM-IRTEVRSRTADSHLGHVFN  104 (143)
T ss_dssp             SEEEEESSTTCEEEETTT----CCCCCSSSCCEEESCCCSEE-EECCCC--TTC-CCCEEEESSCTTCCCEEEE
T ss_pred             CceEEeccccchhhhhhh----hhccCCccceeecccccceE-EEecCC--CCc-cccceEecCCCCccCccCC
Confidence            347999999999977765    35555554333444333221 112211  111 1257899999999996554