Citrus Sinensis ID: 039689

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730-------740-------750-------760---
Protein Sequence
MHWECYQKMTVCVCSLNMHQSLKEVGQKIAMKCKGLPLAAKTLGGLLRGKDDPKDWENVLKTEVWDLADDKCDIIPALRVSYHFLPPQLKQCFAYCSLFPKDHEFQKEQIILLWAAEGFLHQENSKRKMEDLGREFVEELHSRSLFHQSTYDASRFVMHDLINDLTRWAAGETCFRMEDTPEGERRQNVLQRLLNLPRLRVFSLRGYNIFELPKAIENLKHLRFLDLSTTKIEILRESINTLYNLHTLLLEDCRRLKKLCKDMGNLTKLHHLNNSNVGSLEEMLMLKSLVHLQGTLEISRLENVKGVGDASEVQLNSKVNLKALYLQWGVRDAVEPKTETQVIDMLKPHQKLELTITGYGGTKFPIWLGDSLFSKLMLLKFDNCGTCTSLPSVGQLPFLKDPVISGMGRVKIVGSEFYGSSCSVSFPSLETLFFVDICSKLQGTLPERLLLLEKLNIFRCEQLLVTLQCLPALRELEIDGCKGVVLSSPTDLSSLKLVHSRDMAKEVFEQGLPKLERLEIQHVREQTYLWRSETRLPQDIRSLNRLQISRCPQLISLLRTVKIEDCNALESLPEAWMHNSNSSLESLKIRSCNSLVSFPDFALPSQLRTVTIKGCDALESLPEAWMQNSSTSLESLAIDSCDSLTYIARIQLPPSLKRLIIFRCDNLRFNSLRKLKISGGCPDLVSSPRFPASLTELKISDMPSLERLSSIGENLTSLKFLDLDNCPKLKYFSKQGLPKSLLRLIIDECPLIEKRCRKDKGKY
Secondary Structure (PSIPRED)
ccHHHHHHHHcccccccccHHHHHHHHHHHHHccccHHHHHHHHHHccccccHHHHHHHHHHcccccccccccccHHHHccccccccccccccccccccccccEEcHHHHHHHHHHccccccccccccHHHHHHHHHHHHHHcccccccccccccEEEccHHHHHHHHHHHccEEEEEccccccEEEEEEcHHcccccccEEEEcccccccccccccccccccEEEccccccccccccHHccccccEEcccccccccccHHcccccccccEEEcccccccccccccccccccccEEEEEcccccccccccccccccccccccEEEEEEccccccccccHHHHHHccccccccEEEEEcccccccccccccccccccEEEEEcccccccccccccccccccccEEccccccEEEcccccccccccccccccEEEccccccccccccccccccccEEEEcccccccccccccccccEEEEcccccEEEcccccccccEEEcccccHHHHHccccccccEEEEcccccccccccccccccccccccccEEEcccccccccccEEEEEcccccccccHHHHccccccccEEEEEccccccccccccccccccEEEEEcccccccccHHccccccccccEEEEEccccccccccccccccccEEEEEccccccccccccEEEccccccccccccccccccEEEEEcccccccccccccccccccEEEEEccccccccccccccccccEEEEEccHHHHHHcccccccc
Secondary Structure Prediction (SSPRO)
cHHHHHHHHccccccccccccHHHHHHHHHHHHcccHHHHHHHHHHHHccccHHHHHHHHHcHHHccccccccccHHHHEcHcccccHHHHHHHEHEcccccccccHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHHHHcccccccccEEHHHHHHHHHHHHHcccEEEcccccccccccHHHHHcccccccEEEEEEcccccccccccccccccEEEEccccccccccccccccccHcEEEEcccccHHccccHccccccccEEEEcccccccccHHHccccccccEEEEccccccccHHHHHHHcccccccccEEEEEEccccccccccHHHHHHHccccccEEEEEEcccccccccccccccccccEEEEEcccccccccccccccccccEEEEccccccEEccHHHcccccccccccccEEEEcccHcHHHcccccccccccEEEEcccccHHccccccccccEEEEccccccccccccHHHHccccccccccccccccccccccEEEEEcccccccccHHccccccccccccEEEccccccHHHHHHHEEccccccHccccHHHHccccccccEEEEcccccccccccccccccccEEEEcccccHccccHHccccccccccEEEEcccccccccccccccccccEEEEEcccccccccccEEEEccccccccccccccccccEEEEcccccHHHccccccccccccEEEEcccccccccccccccccccEEEEcccHHHHHHHHcccccc
Coil and Loop (DISEMBL)
MHWECYQKMTVCVCSLNMHQSLKEVGQKIAMKCKGLPLAAKTlggllrgkddpkdwENVLKTEVWdladdkcdiipalrvsyhflppqlkQCFAYcslfpkdheFQKEQIILLWAAEGFLHQENSKRKMEDLGREFVEELHsrslfhqstydaSRFVMHDLINDLTRwaagetcfrmedtpegeRRQNVLQRLLnlprlrvfslrgynifELPKAIENLKHLRFLDLSTTKIEILRESINTLYNLHTLLLEDCRRLKKLCKdmgnltklhhlnnsnvgSLEEMLMLKSLVHLQGtleisrlenvkgvgdasevqLNSKVNLKALYLQwgvrdavepktetqvidmlkphqkleltitgyggtkfpiwlGDSLFSKLMLlkfdncgtctslpsvgqlpflkdpvisgmgrvkivgsefygsscsvsfpsletLFFVDICSKLQGTLPERLLLLEKLNIFRCEQLLVTLQCLPAlreleidgckgvvlssptdlsslklvhSRDMAKEVFEQGLPKLERLEIQHVREQTYlwrsetrlpqdirslnrlqisrcPQLISLLRTVkiedcnaleslpeawmhnsnssleslkirscnslvsfpdfalpsqlrtvTIKGCdaleslpeawmqnsstSLESLAIDSCDSLTYIARiqlppslkrliifrcdnlrfnSLRKLKisggcpdlvssprfpasltelkisdmpslERLSSIgenltslkfldldncpklkyfskqglpkSLLRLIIDECPLIEKRCRKDKGKY
Flexible Loop (DISEMBL)
MHWECYQKMTVCVCSLNMHQSLKEVGQKIAMKCKGLPLAAKTLGgllrgkddpkdWENVLKTEVWDLADDKCDIIPALRVSYHFLPPQLKQCFAYCSLFPKDHEFQKEQIILLWAAEGFLHQENSKRKMEDLGREFVEELHSRSLFHQSTYDASRFVMHDLINDLTRWAAGETCFRmedtpegerrQNVLQRllnlprlrvfSLRGYNIFELPKAIENLKHLRFLDLSTTKIEILRESINTLYNLHTLLLEDCRRLKKLCKDMgnltklhhlnnsNVGSLEEMLMLKSLVHLQGTLEISRLENVKGVGDASEVQLNSKVNLKALYLQWGVRDAVEPKTEtqvidmlkphQKLELTITGYGGTKFPIWLGDSLFSKLMLLKFDNCGTCTSLPSVGQLPFLKDPVISGMGRVKIVGSEFYGSSCSVSFPSLETLFFVDICSKLQGTLPERLLLLEKLNIFRCEQLLVTLQCLPALRELEIDGCKGVVLSSPTDLSSLKLVHSRDMAKEVFEqglpklerleIQHVReqtylwrsetrlpqdirslnrlqisrcPQLISLLRTVKIEDCNALESLPEAWMHNSNSSLESLKIRSCNSLVSFPDFALPSQLRTVTIKGCDALESLPEAWMQNSSTSLESLAIDSCDSLTYIARIqlppslkrlIIFRCDNLRFNSLRKLKIsggcpdlvssprFPASLTELKISDMPSLERLSSIGENLTSLKFLDLDNCPKLKyfskqglpksllrliidecpliekrcrkdkgky
Low Complexity Region (SEG)
MHWECYQKMTVCVCSLNMHQSLKEVGQKIAMKCKGLPLAAKTLGGLLRGKDDPKDWENVLKTEVWDLADDKCDIIPALRVSYHFLPPQLKQCFAYCSLFPKDHEFQKEQIILLWAAEGFLHQENSKRKMEDLGREFVEELHSRSLFHQSTYDASRFVMHDLINDLTRWAAGETCFRMEDTPEGErrqnvlqrllnlprlrvFSLRGYNIFELPKAIENLKHLRFLDLSTTKIEILRESINTLYNLHTLLLEDCRRLKKLCKDMGNLTKLHHLNNSNVGSLEEMLMLKSLVHLQGTLEISRLENVKGVGDASEVQLNSKVNLKALYLQWGVRDAVEPKTETQVIDMLKPHQKLELTITGYGGTKFPIWLGDSLFSKLMLLKFDNCGTCTSLPSVGQLPFLKDPVISGMGRVKIVGSEFYGSSCSVSFPSLETLFFVDICSKlqgtlperlllleklNIFRCEQLLVTLQCLPALRELEIDGCKGVVLSSPTDLSSLKLVHSRDMAKEVFEQGLPKLERLEIQHVREQTYLWRSETRLPQDIRSLNRLQISRCPQLISLLRTVKIEDCNALESLPEAWMHNSNSSLESLKIRSCNSLVSFPDFALPSQLRTVTIKGCDALESLPEAWMQNSSTSLESLAIDSCDSLTYIARIQLPPSLKRLIIFRCDNLRFNSLRKLKISGGCPDLVSSPRFPASLTELKISDMPSLERLSSIGENLTSLKFLDLDNCPKLKYFSKQGLPKSLLRLIIDECPLIEKRCRKDKGKY
Disordered region (IsUnstruct)
**WECYQKMTVCVCSLNMHQSLKEVGQKIAMKCKGLPLAAKTLGGLLRGKDDPKDWENVLKTEVWDLADDKCDIIPALRVSYHFLPPQLKQCFAYCSLFPKDHEFQKEQIILLWAAEGFLHQ************EFVEELHSRSLFHQSTYDASRFVMHDLINDLTRWAAGETCFRME********QNVLQRLLNLPRLRVFSLRGYNIFELPKAIENLKHLRFLDLSTTKIEILRESINTLYNLHTLLLEDCRRLKKLCKDMGNLTKLHHLNNSNVGSLEEMLMLKSLVHLQGTLEISRLENVKGVGDASEVQLNSKVNLKALYLQWGVRDAVEPKTETQVIDMLKPHQKLELTITGYGGTKFPIWLGDSLFSKLMLLKFDNCGTCTSLPSVGQLPFLKDPVISGMGRVKIVGSEFYGSSCSVSFPSLETLFFVDICSKLQGTLPERLLLLEKLNIFRCEQLLVTLQCLPALRELEIDGCKGVVLSSPTDLSSLKLVHSRDMAKEVFEQGLPKLERLEIQHVREQTYLWRSETRLPQDIRSLNRLQISRCPQLISLLRTVKIEDCNALESLPEAWMHNS***LESLKIRSCNSLVSFPDFALPSQLRTVTIKGCDALESLPEAWMQNSSTSLESLAIDSCDSLTYIARIQLPPSLKRLIIFRCDNLRFNSLRKLKISGGCPDLVS***********************SIGENLTSLKFLDLDNCPKLKYFSKQGLPKSLLRLIIDECPLIEK*********
Disordered Region (DISOPRED)
MHWECYQKMTVCVCSLNMHQSLKEVGQKIAMKCKGLPLAAKTLGGLLRGKDDPKDWENVLKTEVWDLADDKCDIIPALRVSYHFLPPQLKQCFAYCSLFPKDHEFQKEQIILLWAAEGFLHQENSKRKMEDLGREFVEELHSRSLFHQSTYDASRFVMHDLINDLTRWAAGETCFRMEDTPEGERRQNVLQRLLNLPRLRVFSLRGYNIFELPKAIENLKHLRFLDLSTTKIEILRESINTLYNLHTLLLEDCRRLKKLCKDMGNLTKLHHLNNSNVGSLEEMLMLKSLVHLQGTLEISRLENVKGVGDASEVQLNSKVNLKALYLQWGV*************DMLKPHQKLELTITGYGGTKFPIWLGDSLFSKLMLLKFDNCGTCTSLPSVGQLPFLKDPVISGMGRVKIVGSEFYGSSCSVSFPSLETLFFVDICSKLQGTLPERLLLLEKLNIFRCEQLLVTLQCLPALRELEIDGCKGVVLSSPTDLSSLKLVHSRDMAKEVFEQGLPKLERLEIQHVREQTYLWRSETRLPQDIRSLNRLQISRCPQLISLLRTVKIEDCNALESLPEAWMHNSNSSLESLKIRSCNSLVSFPDFALPSQLRTVTIKGCDALESLPE*****SSTSLESLAIDSCDSLTYIARIQLPPSLKRLIIFRCDNLRFNSLRKLKISGGCPDLVSSPRFPASLTELKISDMPSLERLSSIGENLTSLKFLDLDNCPKLKYFSKQGLPKSLLRLIIDECPLIEKRCRK*****
Disordered Region (DISEMBL)
MHWECYQKMTVCVCSLNMHQSLKEVGQKIAMKCKGLPLAAKTLGGLLRGKDDPKDWENVLKTEVWDLADDKCDIIPALRVSYHFLPPQLKQCFAYCSLFPKDHEFQKEQIILLWAAEGFLHQENSKRKMEDLGREFVEELHSRSLFHQSTYDASRFVMHDLINDLTRWAAGETCFRMEDTPEGERRQNVLQRLLNLPRLRVFSLRGYNIFELPKAIENLKHLRFLDLSTTKIEILRESINTLYNLHTLLLEDCRRLKKLCKDMGNLTKLHHLNNSNVGSLEEMLMLKSLVHLQGTLEISRLENVKGVGDASEVQLNSKVNLKALYLQWGVRDAVEPKTETQVIDMLKPHQKLELTITGYGGTKFPIWLGDSLFSKLMLLKFDNCGTCTSLPSVGQLPFLKDPVISGMGRVKIVGSEFYGSSCSVSFPSLETLFFVDICSKLQGTLPERLLLLEKLNIFRCEQLLVTLQCLPALRELEIDGCKGVVLSSPTDLSSLKLVHSRDMAKEVFEQGLPKLERLEIQHVREQTYLWRSETRLPQDIRSLNRLQISRCPQLISLLRTVKIEDCNALESLPEAWMHNSNSSLESLKIRSCNSLVSFPDFALPSQLRTVTIKGCDALESLPEAWMQNSSTSLESLAIDSCDSLTYIARIQLPPSLKRLIIFRCDNLRFNSLRKLKISGGCPDLVSSPRFPASLTELKISDMPSLERLSSIGENLTSLKFLDLDNCPKLKYFSKQGLPKSLLRLIIDECPLIEKRCRKDKGKY
Disordered Region (DISPRO)
MHWECYQKMTVCVCSLNMHQSLKEVGQKIAMKCKGLPLAAKTLGGLLRGKDDPKDWENVLKTEVWDLADDKCDIIPALRVSYHFLPPQLKQCFAYCSLFPKDHEFQKEQIILLWAAEGFLHQENSKRKMEDLGREFVEELHSRSLFHQSTYDASRFVMHDLINDLTRWAAGETCFRMEDTPEGERRQNVLQRLLNLPRLRVFSLRGYNIFELPKAIENLKHLRFLDLSTTKIEILRESINTLYNLHTLLLEDCRRLKKLCKDMGNLTKLHHLNNSNVGSLEEMLMLKSLVHLQGTLEISRLENVKGVGDASEVQLNSKVNLKALYLQWGVRDAVEPKTETQVIDMLKPHQKLELTITGYGGTKFPIWLGDSLFSKLMLLKFDNCGTCTSLPSVGQLPFLKDPVISGMGRVKIVGSEFYGSSCSVSFPSLETLFFVDICSKLQGTLPERLLLLEKLNIFRCEQLLVTLQCLPALRELEIDGCKGVVLSSPTDLSSLKLVHSRDMAKEVFEQGLPKLERLEIQHVREQTYLWRSETRLPQDIRSLNRLQISRCPQLISLLRTVKIEDCNALESLPEAWMHNSNSSLESLKIRSCNSLVSFPDFALPSQLRTVTIKGCDALESLPEAWMQNSSTSLESLAIDSCDSLTYIARIQLPPSLKRLIIFRCDNLRFNSLRKLKISGGCPDLVSSPRFPASLTELKISDMPSLERLSSIGENLTSLKFLDLDNCPKLKYFSKQGLPKSLLRLIIDECPLIEKRCRKD****
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
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TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MHWECYQKMTVCVCSLNMHQSLKEVGQKIAMKCKGLPLAAKTLGGLLRGKDDPKDWENVLKTEVWDLADDKCDIIPALRVSYHFLPPQLKQCFAYCSLFPKDHEFQKEQIILLWAAEGFLHQENSKRKMEDLGREFVEELHSRSLFHQSTYDASRFVMHDLINDLTRWAAGETCFRMEDTPEGERRQNVLQRLLNLPRLRVFSLRGYNIFELPKAIENLKHLRFLDLSTTKIEILRESINTLYNLHTLLLEDCRRLKKLCKDMGNLTKLHHLNNSNVGSLEEMLMLKSLVHLQGTLEISRLENVKGVGDASEVQLNSKVNLKALYLQWGVRDAVEPKTETQVIDMLKPHQKLELTITGYGGTKFPIWLGDSLFSKLMLLKFDNCGTCTSLPSVGQLPFLKDPVISGMGRVKIVGSEFYGSSCSVSFPSLETLFFVDICSKLQGTLPERLLLLEKLNIFRCEQLLVTLQCLPALRELEIDGCKGVVLSSPTDLSSLKLVHSRDMAKEVFEQGLPKLERLEIQHVREQTYLWRSETRLPQDIRSLNRLQISRCPQLISLLRTVKIEDCNALESLPEAWMHNSNSSLESLKIRSCNSLVSFPDFALPSQLRTVTIKGCDALESLPEAWMQNSSTSLESLAIDSCDSLTYIARIQLPPSLKRLIIFRCDNLRFNSLRKLKISGGCPDLVSSPRFPASLTELKISDMPSLERLSSIGENLTSLKFLDLDNCPKLKYFSKQGLPKSLLRLIIDECPLIEKRCRKDKGKY
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	763	2.2.26 [Sep-21-2011]
Q9LRR4	1054	Putative disease resistan	yes	no	0.715	0.518	0.335	2e-85
Q9LRR5	1424	Putative disease resistan	no	no	0.617	0.330	0.354	1e-76
Q7XA39	988	Putative disease resistan	N/A	no	0.752	0.580	0.323	4e-70
Q7XA42	979	Putative disease resistan	N/A	no	0.719	0.560	0.312	8e-69
Q7XA40	992	Putative disease resistan	N/A	no	0.752	0.578	0.316	1e-65
Q7XBQ9	970	Disease resistance protei	N/A	no	0.732	0.576	0.314	1e-60
Q9STE5	847	Putative disease resistan	no	no	0.374	0.337	0.284	3e-23
O81825	919	Probable disease resistan	no	no	0.326	0.270	0.294	1e-22
Q8L3R3	885	Disease resistance protei	no	no	0.321	0.276	0.276	1e-21
P60838	894	Probable disease resistan	no	no	0.293	0.250	0.300	3e-21

>sp|Q9LRR4|R13L1_ARATH Putative disease resistance RPP13-like protein 1 OS=Arabidopsis thaliana GN=RPPL1 PE=3 SV=1

 Score =  317 bits (812), Expect = 2e-85,   Method: Compositional matrix adjust.
 Identities = 228/679 (33%), Positives = 337/679 (49%), Gaps = 133/679 (19%)

Query: 3   WECYQKMTVCVCSLNMHQSLKEVGQKIAMKCKGLPLAAKTLGGLLRGKDDPKDWENVLKT 62
           W  + K         +++ + ++ ++I  KC+GLPLA KTLGG+LR +    +WE VL +
Sbjct: 340 WSLFMKTVFGNQEPCLNREIGDLAERIVHKCRGLPLAVKTLGGVLRFEGKVIEWERVLSS 399

Query: 63  EVWDLADDKCDIIPALRVSYHFLPPQLKQCFAYCSLFPKDHEFQKEQIILLWAAEGFLHQ 122
            +WDL  DK +++P LRVSY++LP  LK+CFAYCS+FPK H F+K++++LLW AEGFL Q
Sbjct: 400 RIWDLPADKSNLLPVLRVSYYYLPAHLKRCFAYCSIFPKGHAFEKDKVVLLWMAEGFLQQ 459

Query: 123 ENSKRKMEDLGREFVEELHSRSLFHQSTYDASRFVMHDLINDLTRWAAGETCFRMED--- 179
             S + +E+LG E+  EL SRSL  ++    +R++MHD IN+L ++A+GE   + ED   
Sbjct: 460 TRSSKNLEELGNEYFSELESRSLLQKT---KTRYIMHDFINELAQFASGEFSSKFEDGCK 516

Query: 180 --TPEGERR-----------------------------------------QNVLQRLL-N 195
               E  R                                          Q V ++LL  
Sbjct: 517 LQVSERTRYLSYLRDNYAEPMEFEALREVKFLRTFLPLSLTNSSRSCCLDQMVSEKLLPT 576

Query: 196 LPRLRVFSLRGYNIFEL-PKAIENLKHLRFLDLSTTKIEILRESINTLYNLHTLLLEDCR 254
           L RLRV SL  Y I  L P   +N+ H RFLDLS T++E L +S+  +YNL TLLL  C 
Sbjct: 577 LTRLRVLSLSHYKIARLPPDFFKNISHARFLDLSRTELEKLPKSLCYMYNLQTLLLSYCS 636

Query: 255 RLKKLCKDMGNLTKLHHLN---------NSNVGSLEEMLMLKS----------------L 289
            LK+L  D+ NL  L +L+             G L+ +  L +                L
Sbjct: 637 SLKELPTDISNLINLRYLDLIGTKLRQMPRRFGRLKSLQTLTTFFVSASDGSRISELGGL 696

Query: 290 VHLQGTLEISRLENVKGVGDASEVQLNSKVNLKALYLQW-----GVRDAVEP---KTETQ 341
             L G L+I  L+ V  V DA+E  LNSK +L+ +   W        +   P   + E +
Sbjct: 697 HDLHGKLKIVELQRVVDVADAAEANLNSKKHLREIDFVWRTGSSSSENNTNPHRTQNEAE 756

Query: 342 VIDMLKPHQKLE-LTITGYGGTKFPIWLGDSLFSKLMLLKFDNCGTCTSLPSVGQLPFLK 400
           V + L+PH+ +E L I  Y G +FP WL D  FS+++ ++   C  CTSLPS+GQLP LK
Sbjct: 757 VFEKLRPHRHIEKLAIERYKGRRFPDWLSDPSFSRIVCIRLRECQYCTSLPSLGQLPCLK 816

Query: 401 DPVISGMGRVKIVGSEFYGSSCSVS------FPSLETLFFVDICS-----KLQGTLPERL 449
           +  ISGM  ++ +G +FY S   +       F SLETL F ++        ++ T  +  
Sbjct: 817 ELHISGMVGLQSIGRKFYFSDQQLRDQDQQPFRSLETLRFDNLPDWQEWLDVRVTRGDLF 876

Query: 450 LLLEKLNIFRCEQLLVTLQC-LPALRELEIDGCKGVVLSSPTDLSSLKLVHSRDMAKEVF 508
             L+KL I RC +L  TL   LP+L  L I  C G++                D   +  
Sbjct: 877 PSLKKLFILRCPELTGTLPTFLPSLISLHIYKC-GLL----------------DFQPDHH 919

Query: 509 EQGLPKLERLEIQHVREQTYLWRSETRLP-QDIRSLNRLQISRCPQLISL---------- 557
           E     L+ L I+   +      +  + P     +L++L++ +C  L SL          
Sbjct: 920 EYSYRNLQTLSIKSSCD------TLVKFPLNHFANLDKLEVDQCTSLYSLELSNEHLRGP 973

Query: 558 --LRTVKIEDCNALESLPE 574
             LR ++I DC  L+ LP+
Sbjct: 974 NALRNLRINDCQNLQLLPK 992

Potential disease resistance protein.
Arabidopsis thaliana (taxid: 3702)

>sp|Q9LRR5|DRL21_ARATH Putative disease resistance protein At3g14460 OS=Arabidopsis thaliana GN=At3g14460 PE=3 SV=1

 Score =  288 bits (737), Expect = 1e-76,   Method: Compositional matrix adjust.
 Identities = 203/573 (35%), Positives = 285/573 (49%), Gaps = 102/573 (17%)

Query: 3   WECYQKMTVCVCSL-NMHQSLKEVGQKIAMKCKGLPLAAKTLGGLLRGKDDPKDWENVLK 61
           WE   +      S+ +++Q L+ +G++IA +CKGLPLAA+ +   LR K +P DW  V K
Sbjct: 335 WELISRFAFGNISVGSINQELEGIGKRIAEQCKGLPLAARAIASHLRSKPNPDDWYAVSK 394

Query: 62  TEVWDLADDKCDIIPALRVSYHFLPPQLKQCFAYCSLFPKDHEFQKEQIILLWAAEGFLH 121
               + +     I+P L++SY  LPPQLK+CFA CS+FPK H F +E+++LLW A   L+
Sbjct: 395 ----NFSSYTNSILPVLKLSYDSLPPQLKRCFALCSIFPKGHVFDREELVLLWMAIDLLY 450

Query: 122 QENSKRKMEDLGREFVEELHSRSLFHQSTYDASRFVMHDLINDLTRWAAGETCFRMED-- 179
           Q  S R++ED+G +++ +L ++S F +     + FVMHDL+NDL +  +G+ CFR+ED  
Sbjct: 451 QPRSSRRLEDIGNDYLGDLVAQSFFQRLDITMTSFVMHDLMNDLAKAVSGDFCFRLEDDN 510

Query: 180 ---TPEGERR-----------------------------------------QNVLQRLLN 195
               P   R                                          + VL  LLN
Sbjct: 511 IPEIPSTTRHFSFSRSQCDASVAFRSICGAEFLRTILPFNSPTSLESLQLTEKVLNPLLN 570

Query: 196 -LPRLRVFSLRGYNIFELPKAIENLKHLRFLDLSTTKIEILRESINTLYNLHTLLLEDCR 254
            L  LR+ SL  Y I  LPK+++ LK LR+LDLS+TKI+ L E + TL NL TLLL +CR
Sbjct: 571 ALSGLRILSLSHYQITNLPKSLKGLKLLRYLDLSSTKIKELPEFVCTLCNLQTLLLSNCR 630

Query: 255 RLKKLCKDMGNLTK-----------------------LHHLNNSNVGSLEEMLM--LKSL 289
            L  L K +  L                         L  L+N  +G L    +  LK L
Sbjct: 631 DLTSLPKSIAELINLRLLDLVGTPLVEMPPGIKKLRSLQKLSNFVIGRLSGAGLHELKEL 690

Query: 290 VHLQGTLEISRLENVKGVGDASEVQLNSKVNLKALYLQWGVR-DAVEPKT-------ETQ 341
            HL+GTL IS L+NV    +A +  L  K  L  L L+W V+     P +       + +
Sbjct: 691 SHLRGTLRISELQNVAFASEAKDAGLKRKPFLDGLILKWTVKGSGFVPGSFNALACDQKE 750

Query: 342 VIDMLKPHQKLE-LTITGYGGTKFPIWLGDSLFSKLMLLKFDNCGTCTSLPSVGQLPFLK 400
           V+ ML+PH  L+   I  Y G  FP WLGDS F  +  +   +C  C SLP VGQLP LK
Sbjct: 751 VLRMLEPHPHLKTFCIESYQGGAFPKWLGDSSFFGITSVTLSSCNLCISLPPVGQLPSLK 810

Query: 401 DPVISGMGRVKIVGSEFY---GSSCSVSFPSLETLFFVD-------ICSKLQ-GTLPERL 449
              I     ++ VG +F+    +S  V F SL+ L F         IC +L+ G  P   
Sbjct: 811 YLSIEKFNILQKVGLDFFFGENNSRGVPFQSLQILKFYGMPRWDEWICPELEDGIFP--- 867

Query: 450 LLLEKLNIFRCEQLLVTL-QCLPALRELEIDGC 481
             L+KL I RC  L     + LP+  E+ I  C
Sbjct: 868 -CLQKLIIQRCPSLRKKFPEGLPSSTEVTISDC 899

Potential disease resistance protein.

Arabidopsis thaliana (taxid: 3702)

>sp|Q7XA39|RGA4_SOLBU Putative disease resistance protein RGA4 OS=Solanum bulbocastanum GN=RGA4 PE=2 SV=1

 Score =  266 bits (680), Expect = 4e-70,   Method: Compositional matrix adjust.
 Identities = 212/655 (32%), Positives = 329/655 (50%), Gaps = 81/655 (12%)

Query: 21  SLKEVGQKIAMKCKGLPLAAKTLGGLLRGKDDPKDWENVLKTEVWDLADDKCDIIPALRV 80
           +L  +G++I  KC G+PLAAKTLGGLLR K +  +WE+V   E+W L  D+  I+PALR+
Sbjct: 336 NLVAIGKEIVKKCGGVPLAAKTLGGLLRFKREESEWEHVRDNEIWSLPQDESSILPALRL 395

Query: 81  SYHFLPPQLKQCFAYCSLFPKDHEFQKEQIILLWAAEGFLHQENSKRKMEDLGREFVEEL 140
           SYH LP  L+QCFAYC++FPKD +  KE +I LW A GFL  + +  ++ED+G E   EL
Sbjct: 396 SYHHLPLDLRQCFAYCAVFPKDTKMIKENLITLWMAHGFLLSKGN-LELEDVGNEVWNEL 454

Query: 141 HSRSLFH--QSTYDASRFVMHDLINDLTR--WAAGETCFRMEDTPEGERRQNVL------ 190
           + RS F   ++    + F +HDLI+DL    ++A  +C  + +    + +  V       
Sbjct: 455 YLRSFFQEIEAKSGNTYFKIHDLIHDLATSLFSASASCGNIREINVKDYKHTVSIGFAAV 514

Query: 191 ------QRLLNLPRLRVFSLRGYNIFELPKAIENLKHLRFLDLSTTKIEILRESINTLYN 244
                   L     LRV +L    + +LP +I +L HLR+LDLS      L E +  L N
Sbjct: 515 VSSYSPSLLKKFVSLRVLNLSYSKLEQLPSSIGDLLHLRYLDLSCNNFRSLPERLCKLQN 574

Query: 245 LHTLLLEDCRRLKKLCKDMGNLTKLHHLNNSN-----------------------VGSLE 281
           L TL + +C  L  L K    L+ L HL                           VGS +
Sbjct: 575 LQTLDVHNCYSLNCLPKQTSKLSSLRHLVVDGCPLTSTPPRIGLLTCLKTLGFFIVGSKK 634

Query: 282 --EMLMLKSLVHLQGTLEISRLENVKGVGDASEVQLNSKVNLKALYLQWGVRDAVEPK-- 337
             ++  LK+L +L G++ I+ LE VK   DA E  L++K NL++L + W   D   P   
Sbjct: 635 GYQLGELKNL-NLCGSISITHLERVKNDTDA-EANLSAKANLQSLSMSW---DNDGPNRY 689

Query: 338 --TETQVIDMLKPHQKLE-LTITGYGGTKFPIWLGDSLFSKLMLLKFDNCGTCTSLPSVG 394
              E +V++ LKPH  L+ L I  +GG +FP W+  S+  K++ ++  +C  C  LP  G
Sbjct: 690 ESKEVKVLEALKPHPNLKYLEIIAFGGFRFPSWINHSVLEKVISVRIKSCKNCLCLPPFG 749

Query: 395 QLPFLKD-PVISGMGRVKIVGSEFYGSSCSV--SFPSLETL---FFVDICSKLQGTLPER 448
           +LP L++  + +G   V+ V  +   S  S   SFPSL+ L   FF  +   ++    E+
Sbjct: 750 ELPCLENLELQNGSAEVEYVEEDDVHSRFSTRRSFPSLKKLRIWFFRSLKGLMKEEGEEK 809

Query: 449 LLLLEKLNIFRCEQLLVTLQCLPALRELEIDGCKGV-VLSSPTDLSSLK--LVHSRDMAK 505
             +LE++ I  C   L     L ++++LE+ G      LSS ++LS+L    + +   A 
Sbjct: 810 FPMLEEMAILYCP--LFVFPTLSSVKKLEVHGNTNTRGLSSISNLSTLTSLRIGANYRAT 867

Query: 506 EVFEQGLPKLERLEIQHVREQTYLWRSETRLPQDIRSLNRLQISRCPQLISLLRTVKIED 565
            + E+    L  LE        + +++   LP  + SLN             L+ ++IE 
Sbjct: 868 SLPEEMFTSLTNLEFLSF----FDFKNLKDLPTSLTSLNA------------LKRLQIES 911

Query: 566 CNALESLPEAWMHNSNSSLESLKIRSCNSLVSFPD-FALPSQLRTVTIKGCDALE 619
           C++LES PE  +    +SL  L ++ C  L   P+     + L  + + GC  +E
Sbjct: 912 CDSLESFPEQGLEGL-TSLTQLFVKYCKMLKCLPEGLQHLTALTNLGVSGCPEVE 965

Disease resistance protein. Resistance proteins guard the plant against pathogens that contain an appropriate avirulence protein via a direct or indirect interaction with this avirulence protein. That triggers a defense system which restricts the pathogen growth.

Solanum bulbocastanum (taxid: 147425)

>sp|Q7XA42|RGA1_SOLBU Putative disease resistance protein RGA1 OS=Solanum bulbocastanum GN=RGA1 PE=2 SV=2

 Score =  262 bits (669), Expect = 8e-69,   Method: Compositional matrix adjust.
 Identities = 200/639 (31%), Positives = 324/639 (50%), Gaps = 90/639 (14%)

Query: 18  MHQSLKEVGQKIAMKCKGLPLAAKTLGGLLRGKDDPKDWENVLKTEVWDLADDKCDIIPA 77
           ++ +L  +G++I  KC G+PLAAKTLGG+LR K + ++WE+V  + +W+L  D+  I+PA
Sbjct: 331 INPNLMAIGKEIVKKCGGVPLAAKTLGGILRFKREEREWEHVRDSPIWNLPQDESSILPA 390

Query: 78  LRVSYHFLPPQLKQCFAYCSLFPKDHEFQKEQIILLWAAEGFLHQENSKRKMEDLGREFV 137
           LR+SYH LP  L+QCF YC++FPKD +  KE +I  W A GFL  + +  ++ED+G E  
Sbjct: 391 LRLSYHHLPLDLRQCFVYCAVFPKDTKMAKENLIAFWMAHGFLLSKGN-LELEDVGNEVW 449

Query: 138 EELHSRSLFHQSTYDASR--FVMHDLINDLTRWAAGETCFRMEDTPEGERRQN------- 188
            EL+ RS F +   ++ +  F MHDLI+DL       + F    +    R  N       
Sbjct: 450 NELYLRSFFQEIEVESGKTYFKMHDLIHDL-----ATSLFSANTSSSNIREINANYDGYM 504

Query: 189 ---------------VLQRLLNLPRLRVFSLRGYNIFELPKAIENLKHLRFLDLSTT-KI 232
                          +LQ+ ++   LRV +LR  N+ +LP +I +L HLR+LDLS   +I
Sbjct: 505 MSIGFAEVVSSYSPSLLQKFVS---LRVLNLRNSNLNQLPSSIGDLVHLRYLDLSGNFRI 561

Query: 233 EILRESINTLYNLHTLLLEDCRRLKKLCKDMGNLTKLHHL------NNSNVGSLEEMLML 286
             L + +  L NL TL L  C  L  L K    L  L +L        S    +  +  L
Sbjct: 562 RNLPKRLCKLQNLQTLDLHYCDSLSCLPKQTSKLGSLRNLLLDGCSLTSTPPRIGLLTCL 621

Query: 287 KSL------------------VHLQGTLEISRLENVKGVGDASEVQLNSKVNLKALYLQW 328
           KSL                  ++L G++ I++L+ VK   DA E  L++K NL +L L W
Sbjct: 622 KSLSCFVIGKRKGHQLGELKNLNLYGSISITKLDRVKKDTDAKEANLSAKANLHSLCLSW 681

Query: 329 GVRDAVEPKTETQVIDMLKPHQKLE-LTITGYGGTKFPIWLGDSLFSKLMLLKFDNCGTC 387
            +    + + +++V++ LKPH  L+ L I G+GG + P W+  S+   ++ ++   C  C
Sbjct: 682 DLDG--KHRYDSEVLEALKPHSNLKYLEINGFGGIRLPDWMNQSVLKNVVSIRIRGCENC 739

Query: 388 TSLPSVGQLPFLKD-PVISGMGRVKIVGSEFYGSSCSVSFPSLETLFFVDICSKLQGTLP 446
           + LP  G+LP L+   + +G   V+ V    +       FPSL  L   D  S L+G L 
Sbjct: 740 SCLPPFGELPCLESLELHTGSADVEYVEDNVHPG----RFPSLRKLVIWDF-SNLKGLLK 794

Query: 447 ----ERLLLLEKLNIFRCEQLLVTLQCLPALRELEIDGCKGVVLSSPTDLSSLKLVHSRD 502
               ++  +LE++  + C   ++    L +++ L++      VL S   +S+L+ + S D
Sbjct: 795 MEGEKQFPVLEEMTFYWCPMFVIP--TLSSVKTLKVIVTDATVLRS---ISNLRALTSLD 849

Query: 503 MAKEVFEQGLPKLERLEIQHVRE-QTYLWRSETRLPQDIRSLNRLQISRCPQLISLLRTV 561
           ++  V    LP+     + +++  +   +R+   LP  + SLN             L+++
Sbjct: 850 ISDNVEATSLPEEMFKSLANLKYLKISFFRNLKELPTSLASLNA------------LKSL 897

Query: 562 KIEDCNALESLPEAWMHNSNSSLESLKIRSCNSLVSFPD 600
           K E C+ALESLPE  +    +SL  L + +C  L   P+
Sbjct: 898 KFEFCDALESLPEEGVKGL-TSLTELSVSNCMMLKCLPE 935

Disease resistance protein. Resistance proteins guard the plant against pathogens that contain an appropriate avirulence protein via a direct or indirect interaction with this avirulence protein. That triggers a defense system which restricts the pathogen growth.

Solanum bulbocastanum (taxid: 147425)

>sp|Q7XA40|RGA3_SOLBU Putative disease resistance protein RGA3 OS=Solanum bulbocastanum GN=RGA3 PE=2 SV=2

 Score =  251 bits (642), Expect = 1e-65,   Method: Compositional matrix adjust.
 Identities = 213/672 (31%), Positives = 326/672 (48%), Gaps = 98/672 (14%)

Query: 3   WECYQKMTVCVCSLNMHQS-----LKEVGQKIAMKCKGLPLAAKTLGGLLRGKDDPKDWE 57
           W  +++   C      HQ+     L E+G++I  KC G+PLAAKTLGGLLR K +  +WE
Sbjct: 317 WLLFKQRAFC------HQTETSPKLMEIGKEIVKKCGGVPLAAKTLGGLLRFKREESEWE 370

Query: 58  NVLKTEVWDLADDKCDIIPALRVSYHFLPPQLKQCFAYCSLFPKDHEFQKEQIILLWAAE 117
           +V  +E+W+L  D+  ++PALR+SYH LP  L+QCFAYC++FPKD + +KE +I LW A 
Sbjct: 371 HVRDSEIWNLPQDENSVLPALRLSYHHLPLDLRQCFAYCAVFPKDTKIEKEYLIALWMAH 430

Query: 118 GFLHQENSKRKMEDLGREFVEELHSRSLFHQSTYDASR--FVMHDLINDL----TRWAAG 171
            FL  + +  ++ED+G E   EL+ RS F +    + +  F MHDLI+DL       +A 
Sbjct: 431 SFLLSKGN-MELEDVGNEVWNELYLRSFFQEIEVKSGKTYFKMHDLIHDLATSMFSASAS 489

Query: 172 ETCFRMEDTPEGERRQNVLQRLLNL--------------------PRLRVFSLRGYNIFE 211
               R  +  + E    ++    ++                      LRV +L      +
Sbjct: 490 SRSIRQINVKDDEDMMFIVTNYKDMMSIGFSEVVSSYSPSLFKRFVSLRVLNLSNSEFEQ 549

Query: 212 LPKAIENLKHLRFLDLSTTKIEILRESINTLYNLHTLLLEDCRRL-------KKLCK--- 261
           LP ++ +L HLR+LDLS  KI  L + +  L NL TL L +C+ L        KLC    
Sbjct: 550 LPSSVGDLVHLRYLDLSGNKICSLPKRLCKLQNLQTLDLYNCQSLSCLPKQTSKLCSLRN 609

Query: 262 -------------DMGNLTKLHHLNNSNVGSLE--EMLMLKSLVHLQGTLEISRLENVKG 306
                         +G LT L  L    VG  +  ++  L++L +L+G + I+ LE VK 
Sbjct: 610 LVLDHCPLTSMPPRIGLLTCLKTLGYFVVGERKGYQLGELRNL-NLRGAISITHLERVKN 668

Query: 307 VGDASEVQLNSKVNLKALYLQWGVRDAVEPKTETQVIDMLKPHQKLE-LTITGYGGTKFP 365
             +A E  L++K NL +L + W   +  E + E +V++ LKPH  L+ L I  + G   P
Sbjct: 669 DMEAKEANLSAKANLHSLSMSWDRPNRYESE-EVKVLEALKPHPNLKYLEIIDFCGFCLP 727

Query: 366 IWLGDSLFSKLMLLKFDNCGTCTSLPSVGQLPFLKDPVISGMGRVKIVGSEFYGSSCSVS 425
            W+  S+   ++ +    C  C+ LP  G+LP L+   +   G V++   E  G      
Sbjct: 728 DWMNHSVLKNVVSILISGCENCSCLPPFGELPCLESLELQD-GSVEVEYVEDSGFLTRRR 786

Query: 426 FPSLETLFFVDICS-----KLQGTLPERLLLLEKLNIFRCEQLLVTLQCLPALRELEIDG 480
           FPSL  L     C+     +++G   E+  +LE++ I  C   +     L ++++LEI G
Sbjct: 787 FPSLRKLHIGGFCNLKGLQRMKGA--EQFPVLEEMKISDCP--MFVFPTLSSVKKLEIWG 842

Query: 481 -CKGVVLSSPTDLSSLK--LVHSRDMAKEVFEQGLPKLERLEIQHVREQTYLWRSETRLP 537
                 LSS ++LS+L    + S      + E+    LE L    +        +   LP
Sbjct: 843 EADAGGLSSISNLSTLTSLKIFSNHTVTSLLEEMFKNLENL----IYLSVSFLENLKELP 898

Query: 538 QDIRSLNRLQ---ISRCPQLISL----------LRTVKIEDCNALESLPEAWMHNSNSSL 584
             + SLN L+   I  C  L SL          L  + +E CN L+ LPE   H   ++L
Sbjct: 899 TSLASLNNLKCLDIRYCYALESLPEEGLEGLSSLTELFVEHCNMLKCLPEGLQH--LTTL 956

Query: 585 ESLKIRSCNSLV 596
            SLKIR C  L+
Sbjct: 957 TSLKIRGCPQLI 968

Disease resistance protein. Resistance proteins guard the plant against pathogens that contain an appropriate avirulence protein via a direct or indirect interaction with this avirulence protein. That triggers a defense system which restricts the pathogen growth.

Solanum bulbocastanum (taxid: 147425)

>sp|Q7XBQ9|RGA2_SOLBU Disease resistance protein RGA2 OS=Solanum bulbocastanum GN=RGA2 PE=1 SV=1

 Score =  234 bits (598), Expect = 1e-60,   Method: Compositional matrix adjust.
 Identities = 206/656 (31%), Positives = 308/656 (46%), Gaps = 97/656 (14%)

Query: 18  MHQSLKEVGQKIAMKCKGLPLAAKTLGGLLRGKDDPKDWENVLKTEVWDLADDKCDIIPA 77
           ++ +L  +G++I  K  G+PLAAKTLGG+L  K + + WE+V  + +W+L  D+  I+PA
Sbjct: 332 INPNLVAIGKEIVKKSGGVPLAAKTLGGILCFKREERAWEHVRDSPIWNLPQDESSILPA 391

Query: 78  LRVSYHFLPPQLKQCFAYCSLFPKDHEFQKEQIILLWAAEGFLHQENSKRKMEDLGREFV 137
           LR+SYH LP  LKQCFAYC++FPKD + +KE++I LW A GFL  + +  ++ED+G E  
Sbjct: 392 LRLSYHQLPLDLKQCFAYCAVFPKDAKMEKEKLISLWMAHGFLLSKGN-MELEDVGDEVW 450

Query: 138 EELHSRSLFHQSTYDASR--FVMHDLINDLTRWAAGETCFRMEDTPEGERRQN------- 188
           +EL+ RS F +      +  F MHDLI+DL       + F    +    R  N       
Sbjct: 451 KELYLRSFFQEIEVKDGKTYFKMHDLIHDL-----ATSLFSANTSSSNIREINKHSYTHM 505

Query: 189 ------------VLQRLLNLPRLRVFSLRGYNIFELPKAIENLKHLRFLDLSTTKIEILR 236
                        L  L     LRV +L      +LP +I +L HLR+L+L  + +  L 
Sbjct: 506 MSIGFAEVVFFYTLPPLEKFISLRVLNLGDSTFNKLPSSIGDLVHLRYLNLYGSGMRSLP 565

Query: 237 ESINTLYNLHTLLLEDCRRLKKLCKDMGNLTKLHH--LNNSN--------VGSLEEMLML 286
           + +  L NL TL L+ C +L  L K+   L  L +  L+ S         +GSL  +  L
Sbjct: 566 KQLCKLQNLQTLDLQYCTKLCCLPKETSKLGSLRNLLLDGSQSLTCMPPRIGSLTCLKTL 625

Query: 287 KSLV---------------HLQGTLEISRLENVKGVGDASEVQLNSKVNLKALYLQW-GV 330
              V               +L G+++IS LE VK   DA E  L++K NL +L + W   
Sbjct: 626 GQFVVGRKKGYQLGELGNLNLYGSIKISHLERVKNDKDAKEANLSAKGNLHSLSMSWNNF 685

Query: 331 RDAVEPKTETQVIDMLKPHQKL-ELTITGYGGTKFPIWLGDSLFSKLMLLKFDNCGTCTS 389
              +    E +V++ LKPH  L  L I G+ G   P W+  S+   ++ +   N   C+ 
Sbjct: 686 GPHIYESEEVKVLEALKPHSNLTSLKIYGFRGIHLPEWMNHSVLKNIVSILISNFRNCSC 745

Query: 390 LPSVGQLPFLKDPVIS-GMGRVKIVG----SEFYGSSCSVSFPSLETLFFVDICSKLQGT 444
           LP  G LP L+   +  G   V+ V         G    + FPSL  L   D  S L+G 
Sbjct: 746 LPPFGDLPCLESLELHWGSADVEYVEEVDIDVHSGFPTRIRFPSLRKLDIWDFGS-LKGL 804

Query: 445 LPERLLLLEKLNIFRCEQLLVTLQCLPALRELEIDGCKGVVLSSP-TDLSSLKLVHSRDM 503
           L +                    +  P L E+ I  C  + LSS    L+SL++ +++ +
Sbjct: 805 LKKE-----------------GEEQFPVLEEMIIHECPFLTLSSNLRALTSLRICYNK-V 846

Query: 504 AKEVFEQGLPKLERLEIQHVREQTYLWRSETRLPQDIRSLNRLQISRCPQLISLLRTVKI 563
           A    E+    L  L+   +     L      LP  + SLN             L+++KI
Sbjct: 847 ATSFPEEMFKNLANLKYLTISRCNNL----KELPTSLASLNA------------LKSLKI 890

Query: 564 EDCNALESLPEAWMHNSNSSLESLKIRSCNSLVSFPD-FALPSQLRTVTIKGCDAL 618
           + C ALESLPE  +    SSL  L +  CN L   P+     + L ++ I+GC  L
Sbjct: 891 QLCCALESLPEEGLEGL-SSLTELFVEHCNMLKCLPEGLQHLTTLTSLKIRGCPQL 945

Disease resistance protein. Resistance proteins guard the plant against pathogens that contain an appropriate avirulence protein via a direct or indirect interaction with this avirulence protein. That triggers a defense system which restricts the pathogen growth. Confers a broad resistance to all known races of P.infestans.

Solanum bulbocastanum (taxid: 147425)

>sp|Q9STE5|R13L2_ARATH Putative disease resistance RPP13-like protein 2 OS=Arabidopsis thaliana GN=RPP13L2 PE=3 SV=1

 Score =  111 bits (277), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 98/345 (28%), Positives = 153/345 (44%), Gaps = 59/345 (17%)

Query: 3   WECYQKMTVCVCSLNMHQSLKEVGQKIAMKCKGLPLAAKTLGGLLRGKDDPKDWENVLKT 62
           W  ++K       L + Q L+++G+++  KC GLP     L GL+  K  P +W +V  +
Sbjct: 328 WNLFEKKAFRYI-LKVDQELQKIGKEMVQKCGGLPRTTVVLAGLMSRKK-PNEWNDVWSS 385

Query: 63  EVWDLADDKCDIIPALRVSYHFLPPQLKQCFAYCSLFPKDHEFQKEQIILLWAAEGFLHQ 122
               + DD   +     +S+  +  +LK CF Y S+FP+D+E   E++I L  AEGF+ Q
Sbjct: 386 --LRVKDDNIHVSSLFDLSFKDMGHELKLCFLYLSVFPEDYEVDVEKLIQLLVAEGFI-Q 442

Query: 123 ENSKRKMEDLGREFVEELHSRSLFHQSTYDASR---FVMHDLINDLTRWAAGETCFR--- 176
           E+ +  MED+ R ++E+L   SL         +   F +HDL+ + T   + E  F    
Sbjct: 443 EDEEMTMEDVARYYIEDLVYISLVEVVKRKKGKLMSFRIHDLVREFTIKKSKELNFVNVY 502

Query: 177 -----------------MEDTPEGERRQNVLQR------------------LLNLPRLRV 201
                            M+D    +RR N   R                   L L  LRV
Sbjct: 503 DEQHSSTTSRREVVHHLMDDNYLCDRRVNTQMRSFLFFGKRRNDITYVETITLKLKLLRV 562

Query: 202 FSL-------RGYNIFELPKAIENLKHLRFLDLSTTKIEILRESINTLYNLHTLLLEDCR 254
            +L       +GY+ + LP  I  L HLR+L ++ T +  L + I+ L  L T  L+   
Sbjct: 563 LNLGGLHFICQGYSPWSLPDVIGGLVHLRYLGIADTVVNNLPDFISNLRFLQT--LDASG 620

Query: 255 RLKKLCKDMGNLTKLHHLNNSNVGSLEEMLMLKSLVHLQGTLEIS 299
              +   D+ NLT L HL    +G     L++   V+LQ    IS
Sbjct: 621 NSFERMTDLSNLTSLRHLTGRFIGE----LLIGDAVNLQTLRSIS 661

Potential disease resistance protein.

Arabidopsis thaliana (taxid: 3702)

>sp|O81825|DRL28_ARATH Probable disease resistance protein At4g27220 OS=Arabidopsis thaliana GN=At4g27220 PE=2 SV=1

 Score =  108 bits (270), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 83/282 (29%), Positives = 139/282 (49%), Gaps = 33/282 (11%)

Query: 21  SLKEVGQKIAMKCKGLPLAAKTLGGLLRGKDDPKDWE---NVLKTEVWDLADDKCDIIPA 77
           ++K + + ++ +C GLPLA  T+G  LRGK   + W+   N+LK     + D +  I   
Sbjct: 293 NVKPIAKDVSHECCGLPLAIITIGRTLRGKPQVEVWKHTLNLLKRSAPSI-DTEEKIFGT 351

Query: 78  LRVSYHFLPPQLKQCFAYCSLFPKDHEFQKEQIILLWAAEGFLHQENSKRKMEDLGREFV 137
           L++SY FL   +K CF +C+LFP+D+  +  ++I+ W AEG L  ++    M + G   V
Sbjct: 352 LKLSYDFLQDNMKSCFLFCALFPEDYSIKVSELIMYWVAEGLLDGQHHYEDMMNEGVTLV 411

Query: 138 EELHSRSLFHQSTYDASRFV-MHDLINDLTRW---AAGETCFRMEDTPEG---------- 183
           E L    L      D+   V MHD++ D   W   + GE    +     G          
Sbjct: 412 ERLKDSCLLEDG--DSCDTVKMHDVVRDFAIWFMSSQGEGFHSLVMAGRGLIEFPQDKFV 469

Query: 184 ---ERRQNVLQRLLNLP-------RLRVFSLRG-YNIFELPKA-IENLKHLRFLDLSTTK 231
              +R   +  +L  LP          V  L+G  ++ E+P   ++   +LR LDLS  +
Sbjct: 470 SSVQRVSLMANKLERLPNNVIEGVETLVLLLQGNSHVKEVPNGFLQAFPNLRILDLSGVR 529

Query: 232 IEILRESINTLYNLHTLLLEDCRRLKKLCKDMGNLTKLHHLN 273
           I  L +S + L++L +L+L +C++L+ L   + +L KL  L+
Sbjct: 530 IRTLPDSFSNLHSLRSLVLRNCKKLRNL-PSLESLVKLQFLD 570

Probable disease resistance protein.

Arabidopsis thaliana (taxid: 3702)

>sp|Q8L3R3|RFL1_ARATH Disease resistance protein RFL1 OS=Arabidopsis thaliana GN=RFL1 PE=3 SV=2

 Score =  105 bits (263), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 82/297 (27%), Positives = 134/297 (45%), Gaps = 52/297 (17%)

Query: 15  SLNMHQSLKEVGQKIAMKCKGLPLAAKTLGGLLRGKDDPKDWENVLK--TEVWDLADDKC 72
           +L  H  + ++ +K++ KC GLPLA   +G  +  K   ++W +  +  T   D +  + 
Sbjct: 330 TLGSHPDIPQLARKVSEKCCGLPLALNVIGETMSFKRTIQEWRHATEVLTSATDFSGMED 389

Query: 73  DIIPALRVSYHFLPPQ-LKQCFAYCSLFPKDHEFQKEQIILLWAAEGFLHQENSKRKMED 131
           +I+P L+ SY  L  +  K CF YCSLFP+D E +KE +I  W  EGF+ ++  + K  +
Sbjct: 390 EILPILKYSYDSLNGEDAKSCFLYCSLFPEDFEIRKEMLIEYWICEGFIKEKQGREKAFN 449

Query: 132 LGREFVEELHSRSLFHQSTYDASRFVMHDLINDLTRWAAG------ETC-----FRMEDT 180
            G + +  L   SL  +   D     MHD++ ++  W         E C       +++ 
Sbjct: 450 QGYDILGTLVRSSLLLEGAKDKDVVSMHDMVREMALWIFSDLGKHKERCIVQAGIGLDEL 509

Query: 181 PEGERRQ---------NVLQRLLN----------------------------LPRLRVFS 203
           PE E  +         N  +++L                             +P L V  
Sbjct: 510 PEVENWRAVKRMSLMNNNFEKILGSPECVELITLFLQNNYKLVDISMEFFRCMPSLAVLD 569

Query: 204 L-RGYNIFELPKAIENLKHLRFLDLSTTKIEILRESINTLYNLHTLLLEDCRRLKKL 259
           L   +++ ELP+ I  L  L++LDLS T IE L   ++ L  L  L LE  RRL+ +
Sbjct: 570 LSENHSLSELPEEISELVSLQYLDLSGTYIERLPHGLHELRKLVHLKLERTRRLESI 626

Disease resistance (R) protein.

Arabidopsis thaliana (taxid: 3702)

>sp|P60838|DRL1_ARATH Probable disease resistance protein At1g12280 OS=Arabidopsis thaliana GN=At1g12280 PE=3 SV=1

 Score =  104 bits (259), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 76/253 (30%), Positives = 123/253 (48%), Gaps = 29/253 (11%)

Query: 3   WECYQKMTVCVCSLNMHQSLKEVGQKIAMKCKGLPLAAKTLGGLLRGKDDPKDWEN---V 59
           WE +Q M V   +L  H  + E+ +K+A KC GLPLA   +G  +  K   ++W N   V
Sbjct: 319 WELFQ-MKVGENTLKGHPDIPELARKVAGKCCGLPLALNVIGETMACKRMVQEWRNAIDV 377

Query: 60  LKTEVWDLADDKCDIIPALRVSYHFL-PPQLKQCFAYCSLFPKDHEFQKEQIILLWAAEG 118
           L +   +    +  I+P L+ SY  L   Q+K CF YCSLFP+D+  +KE++I  W  EG
Sbjct: 378 LSSYAAEFPGME-QILPILKYSYDNLNKEQVKPCFLYCSLFPEDYRMEKERLIDYWICEG 436

Query: 119 FLHQENSKRKMEDLGREFVEELHSRSLFHQSTYDASRFVMHDLINDLTRWAAGETCFRME 178
           F+ +  S+ +    G E +  L    L  +   +  +  MHD++ ++  W A +      
Sbjct: 437 FIDENESRERALSQGYEIIGILVRACLLLEEAINKEQVKMHDVVREMALWIASDL----- 491

Query: 179 DTPEGERRQNVLQRLLNLPRLRVFSLRGYNIFELPKAIENLKHLRFLDLSTTKIEILRES 238
               GE ++  + ++            G  + E+PK ++N   +R + L   +IEIL  S
Sbjct: 492 ----GEHKERCIVQV------------GVGLREVPK-VKNWSSVRRMSLMENEIEILSGS 534

Query: 239 INTLYNLHTLLLE 251
              L  L TL L+
Sbjct: 535 PECL-ELTTLFLQ 546

Probable disease resistance protein.

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	763
359487065	1424	PREDICTED: putative disease resistance p	0.971	0.520	0.376	1e-132
359495896	1548	PREDICTED: putative disease resistance p	0.981	0.483	0.373	1e-130
400131587	1388	FB_MR5 [Malus x robusta]	0.904	0.497	0.374	1e-127
224059590	1381	cc-nbs-lrr resistance protein [Populus t	0.960	0.530	0.367	1e-127
147852435	1398	hypothetical protein VITISV_023432 [Viti	0.982	0.536	0.341	1e-126
147819724	1481	hypothetical protein VITISV_007111 [Viti	0.930	0.479	0.359	1e-125
225450019	1394	PREDICTED: putative disease resistance p	0.930	0.509	0.359	1e-124
147860511	1406	hypothetical protein VITISV_014536 [Viti	0.950	0.515	0.339	1e-123
359495083	1280	PREDICTED: putative disease resistance p	0.980	0.584	0.352	1e-123
284026888	1424	CC-NBS-LRR protein [Quercus suber]	0.904	0.484	0.370	1e-123

>gi|359487065|ref|XP_002270668.2| PREDICTED: putative disease resistance protein At3g14460-like [Vitis vinifera]

 Score =  477 bits (1228), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 337/894 (37%), Positives = 446/894 (49%), Gaps = 153/894 (17%)

Query: 3    WECYQKMTVCVCSLNMHQSLKEVGQKIAMKCKGLPLAAKTLGGLLRGKDDPKDWENVLKT 62
            WE ++K      + N H  L  +G++I  KC GLPLAAK LGGLLR +     W  +L +
Sbjct: 347  WELFKKHAFENRNTNEHPDLALIGREIVKKCGGLPLAAKALGGLLRHEHREDKWNIILAS 406

Query: 63   EVWDLADDKCDIIPALRVSYHFLPPQLKQCFAYCSLFPKDHEFQKEQIILLWAAEGFLHQ 122
            ++W+L  DKC I+PALR+SY+ LP  LK+CFAYC+LFP+D+EF+KE++ILLW AEG + Q
Sbjct: 407  KIWNLPGDKCGILPALRLSYNHLPSHLKRCFAYCALFPQDYEFKKEELILLWMAEGLIQQ 466

Query: 123  ENSKRKMEDLGREFVEELHSRSLFHQSTYDASRFVMHDLINDLTRWAAGETCFRMED--- 179
             N   KMEDLG ++  EL SRS F  S  + SRFVMHDLINDL +  AG+TC  ++D   
Sbjct: 467  SNEDEKMEDLGDDYFCELLSRSFFQSSNSNKSRFVMHDLINDLAKSIAGDTCLHLDDGLW 526

Query: 180  ------TPEGER-------------------RQNVLQRLLNLP----------------- 197
                   PE  R                   ++  L   + LP                 
Sbjct: 527  NDLQRSVPESTRHSSFIRHDYDIFKKFERFDKKECLHTFIALPIDEPHSFISNKVLEELI 586

Query: 198  ----RLRVFSLRGYNIFELPKAIENLKHLRFLDLSTTKIEILRESINTLYNLHTLLLEDC 253
                 LRV SL  Y I E+P +   LKHLR+LDLS T I+ L +SI  L+ L TL L  C
Sbjct: 587  PRLGHLRVLSLAHYMISEIPDSFGKLKHLRYLDLSYTSIKWLPDSIGNLFYLQTLKLSCC 646

Query: 254  RRLKKLCKDMGNLTKLHHLNNSNVGSLEEM-----------------------LMLKSLV 290
              L +L   +GNL  L HL+ +    L+EM                       L +K L 
Sbjct: 647  EELIRLPISIGNLINLRHLDVAGAIRLQEMPVQIGKLKDLRILSNFIVDKNNGLTIKELT 706

Query: 291  ---HLQGTLEISRLENVKGVGDASEVQLNSKVNLKALYLQWG--VRDAVEPKTETQVIDM 345
               HL+  L IS+LENV  + DA +  L  K NL++L +QW   +  +   + +  V+D 
Sbjct: 707  GMSHLRRQLCISKLENVVNIQDARDADLKLKRNLESLIMQWSSELDGSGNERNQMDVLDS 766

Query: 346  LKPHQKL-ELTITGYGGTKFPIWLGDSLFSKLMLLKFDNCGTCTSLPSVGQLPFLKDPVI 404
            L+P   L +L I  YGG +FP W+GD+LFSK++ L   +C  CTSLP +GQLP LK   I
Sbjct: 767  LQPCLNLNKLCIQLYGGPEFPRWIGDALFSKMVDLSLIDCRKCTSLPCLGQLPSLKQLRI 826

Query: 405  SGMGRVKIVGSEFYGS---SCSVSFPSLETLFF--------------------------- 434
             GM  VK VG+EFYG    S    FPSLE+L F                           
Sbjct: 827  QGMVGVKKVGAEFYGETRVSAGKFFPSLESLHFNSMSEWEHWEDWSSSTESLFPCLHELT 886

Query: 435  VDICSKLQGTLPERLLLLEKLNIFRCEQLLVTLQCLPALRELEIDGCKGVVLSSPTDLSS 494
            ++ C KL   LP  L  L +L++  C +L   L  LP L+EL +      VLSS  DL+S
Sbjct: 887  IEDCPKLIMKLPTYLPSLTELSVHFCPKLESPLSRLPLLKELHVGEFNEAVLSSGNDLTS 946

Query: 495  L-KLVHSRDMA----KEVFEQGLPKLERLEIQHVREQTYLWR----SETRLPQDIRSLNR 545
            L KL  SR        E F Q L  L  LE+    E  YLW     SE  L  +IR    
Sbjct: 947  LTKLTISRISGLIKLHEGFMQFLQGLRVLEVWECEELEYLWEDGFGSENSLSLEIRD--- 1003

Query: 546  LQISRCPQLISL---LRTVKIEDCNALESLPEAWMHNSNSSLESLKIRSCNSLVSFPDFA 602
                 C QL+SL   L+++ I  C  LE LP  W   S + LE L IR C  L SFPD  
Sbjct: 1004 -----CDQLVSLGCNLQSLAISGCAKLERLPNGW--QSLTCLEELTIRDCPKLASFPDVG 1056

Query: 603  LPSQLRTVTIKGCDALESLPEAWM---------QNSSTSLESLAIDSCDSLTYIARIQLP 653
             P +LR++T+  C  ++SLP+  M          N+S  LESL I+ C SL    + QLP
Sbjct: 1057 FPPKLRSLTVGNCKGIKSLPDGMMLKMRNDTTDSNNSCVLESLEIEQCPSLICFPKGQLP 1116

Query: 654  PSLKRLIIFRCDNLRFNSLRKLKISG-------GCPDLVSSPR--FPASLTELKISDMPS 704
             +LK L I  C+NL+      + +          C  L+  P+   PA+L  L ISD   
Sbjct: 1117 TTLKSLRILACENLKSLPEEMMGMCALEDFLIVRCHSLIGLPKGGLPATLKRLTISDCRR 1176

Query: 705  LERLSS-----IGENLTSLKFLDLDNCPKLKYFSKQGLPKSLLRLIIDECPLIE 753
            LE L          N  +LK L++  CP L  F +   P +L RL I+ C  +E
Sbjct: 1177 LESLPEGIMHHHSTNAAALKELEISVCPSLTSFPRGKFPSTLERLHIENCEHLE 1230

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359495896|ref|XP_003635111.1| PREDICTED: putative disease resistance protein At3g14460-like [Vitis vinifera]

 Score =  471 bits (1212), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 334/894 (37%), Positives = 476/894 (53%), Gaps = 145/894 (16%)

Query: 3    WECYQKMTVCVCSLNMHQSLKEVGQKIAMKCKGLPLAAKTLGGLLRGKDDPKDWENVLKT 62
            W  + K      +++ H +L+ +  +I  KC GLPLAAK LGGLLR K     WE+VL +
Sbjct: 354  WNVFVKHAFENKNIDEHPNLRLLDTRIIEKCSGLPLAAKVLGGLLRSKPQ-NQWEHVLSS 412

Query: 63   EVWDLADDKCDIIPALRVSYHFLPPQLKQCFAYCSLFPKDHEFQKEQIILLWAAEGFLHQ 122
            ++W+    +  +IP LR+SY  LP  LK+CFAYC+LFP+D++F+++++ILLW AEG +H+
Sbjct: 413  KMWN----RSGVIPVLRLSYQHLPSHLKRCFAYCALFPRDYKFEQKELILLWMAEGLIHE 468

Query: 123  -ENSKRKMEDLGREFVEELHSRSLFHQSTYDASRFVMHDLINDLTRWAAGETCFRMED-- 179
             E  K +MEDLG ++ +EL SR  F  S+   S+F+MHDLINDL +  A E CF +E+  
Sbjct: 469  AEEEKCQMEDLGADYFDELLSRCFFQPSSNSKSQFIMHDLINDLAQDVATEICFNLENIH 528

Query: 180  -TPEGERRQNVLQ---------RLLNLP-------------------------------- 197
             T E  R  + ++          +LN P                                
Sbjct: 529  KTSEMTRHLSFIRSEYDVFKKFEVLNKPEQLRTFVALPVTVNNKMKCYLSTKVLHGLLPK 588

Query: 198  --RLRVFSLRGYNIFELPKAIENLKHLRFLDLSTTKIEILRESINTLYNLHTLLLEDCRR 255
              +LRV SL GY I ELP +I +LKHLR+L+LS TK++ L E++++LYNL +L+L +C  
Sbjct: 589  LIQLRVLSLSGYEINELPNSIGDLKHLRYLNLSHTKLKWLPEAVSSLYNLQSLILCNCME 648

Query: 256  LKKLCKDMGNLTKLHHLNNSNVGSLEEM--------------------------LMLKSL 289
            L KL   + NLT   HL+ S    LEEM                            LK+L
Sbjct: 649  LIKLPICIMNLTNFRHLDISGSTMLEEMPPQVGSLVNLQTLSMFFLSKDNGSRIKELKNL 708

Query: 290  VHLQGTLEISRLENVKGVGDASEVQLNSKVNLKALYLQWGVRDAVEPKTETQVIDMLK-- 347
            ++L+G L I  LENV    DA  V L    N++ L + W   D+   + E+ VI++LK  
Sbjct: 709  LNLRGELAIIGLENVSDPRDAMYVNLKEIPNIEDLIMVWS-EDSGNSRNESTVIEVLKWL 767

Query: 348  -PHQKL-ELTITGYGGTKFPIWLGDSLFSKLMLLKFDNCGTCTSLPSVGQLPFLKDPVIS 405
             PHQ L +L I  YGG+KFP W+GD  FSK++ L+  +C  CTSLP++G LPFLKD VI 
Sbjct: 768  QPHQSLKKLEIAFYGGSKFPHWIGDPSFSKMVCLELTDCKNCTSLPALGGLPFLKDLVIE 827

Query: 406  GMGRVKIVGSEFYGSSCSVSFPSLETLFFVDICSKLQGTLPERLLLLEKLNIFRCEQLL- 464
            GM +VK +G  FYG + +  F SLE L F ++ ++    L +RL++LE L I  C++L  
Sbjct: 828  GMNQVKSIGDGFYGDTAN-PFQSLEYLRFENM-AEWNNWLAQRLMVLEDLGINECDELAC 885

Query: 465  -----VTLQCLPALRELEIDGCKGVV----LSSPTDLSSLKLVHSRDMAKEVFEQGLPKL 515
                   L+ L  LR L I+GC GVV       P +L  L++    ++ K      L  L
Sbjct: 886  LRKPGFGLENLGGLRRLWINGCDGVVSLEEQGLPCNLQYLEVKGCSNLEK--LPNALYTL 943

Query: 516  ERLEIQHVREQTYLWR-SETRLPQDIR----------------------SLNRLQISRCP 552
              L    +     L    ET LP  +R                      +L R++I  CP
Sbjct: 944  ASLAYTIIHNCPKLVSFPETGLPPMLRDLSVRNCEGLETLPDGMMINSCALERVEIRDCP 1003

Query: 553  QLISL--------LRTVKIEDCNALESLPEAWMHNSNSSLESLKIRSCNSLVSFPDFALP 604
             LI          L+ + IE+C  LESLPE   +N+   LE L +  C SL S P    P
Sbjct: 1004 SLIGFPKRELPVTLKMLIIENCEKLESLPEGIDNNNTCRLEKLHVCGCPSLKSIPRGYFP 1063

Query: 605  SQLRTVTIKGCDALESLPEAWMQNSSTSLESLAIDSCDSLTYIARIQLPPSLKRLIIFRC 664
            S L T++I GC  L+S+P   +QN  TSL+ L I +C  +       L P+LK L I  C
Sbjct: 1064 STLETLSIWGCLQLQSIPGNMLQN-LTSLQFLHICNCPDVVSSPEAFLNPNLKALSITDC 1122

Query: 665  DNLRF----------NSLRKLKISGGCPDLVSSPR----FPASLTELKISDMPSLERLSS 710
            +N+R+           SL +L I G  PDL+S        P SLT L + ++ +L+ ++S
Sbjct: 1123 ENMRWPLSGWGLRTLTSLDELGIHGPFPDLLSFSGSHLLLPTSLTYLGLVNLHNLKSVTS 1182

Query: 711  IG-ENLTSLKFLDLDNCPKLKYF-SKQGLPKSLLRLIIDECPLIEKRCRKDKGK 762
            +G  +L SLK L+  +CPKL+ F  K+GLP +L RL+I ECP+++KRC K KG 
Sbjct: 1183 MGLRSLMSLKSLEFYSCPKLRSFVPKEGLPPTLARLVIWECPILKKRCLKGKGN 1236

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|400131587|emb|CCH50986.1| FB_MR5 [Malus x robusta]

 Score =  462 bits (1188), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 329/879 (37%), Positives = 453/879 (51%), Gaps = 189/879 (21%)

Query: 27   QKIAMKCKGLPLAAKTLGGLLRGKDDPKDWENVLKTEVWDLADDKCDIIPALRVSYHFLP 86
            +KIA KC+GLPLAA+TLGG+L  KD   +WE++L  ++W L+++  DI+P LR++Y +LP
Sbjct: 361  EKIAAKCRGLPLAARTLGGVLLRKD-TYEWEDILNNKLWSLSNEH-DILPVLRLTYFYLP 418

Query: 87   PQLKQCFAYCSLFPKDHEFQKEQIILLWAAEGF-LHQENSKRKMEDLGREFVEELHSRSL 145
              LK+CFAYCS+ P D+EF+++Q+ILLW AEGF L +   K+++EDLG ++  +L SRSL
Sbjct: 419  SHLKRCFAYCSILPNDYEFEEKQMILLWMAEGFILPRPEDKKQIEDLGADYFRDLVSRSL 478

Query: 146  FHQSTYDASRFVMHDLINDLTRWAAGETCFRMED--TPEGER------------------ 185
            F +ST   S++VMHDLI DL RWAAGE CFR+ED    +GE+                  
Sbjct: 479  FQKSTKCISKYVMHDLIGDLARWAAGEICFRLEDKQNDDGEQLRCFPKARHSSYIRGLSD 538

Query: 186  ------------------------------RQNVLQRLLNLPRLRVFSLRGYNIFELPKA 215
                                          RQ     L  L  LRV S   Y I ELP +
Sbjct: 539  GVKRFEVFSELKYLRTFLPLRKDSFWNYLSRQVAFDLLPKLQYLRVLSFNCYKITELPDS 598

Query: 216  IENLKHLRFLDLSTTKIEILRESINTLYNLHTLLLEDCRRLKKLCKDMGNLTKLHHLNNS 275
            I +L++LR+LDLS T I  L +S +TLYNL TL+LE C +LK L  DM NL  L HLNNS
Sbjct: 599  IGDLRYLRYLDLSYTDITSLPKSTSTLYNLQTLILEGCSKLKALPIDMSNLVNLRHLNNS 658

Query: 276  NVGSLEEM-----------------------------LMLKSLVHLQGTLEISRLENVKG 306
            NV  LE+M                               L+ L+HL+GTL ISRLENV  
Sbjct: 659  NVSLLEDMPPQLGRLVNLQSLTKFVVSGGGGGDRSGIRELEFLMHLRGTLCISRLENVTD 718

Query: 307  VGDASEVQLNSKVNLKALYLQWGVRDAVEPKTETQVIDMLKPHQKL-ELTITGYGGTKFP 365
            V DA    LN K  L +L L+W    +   +TE+ V+DML+PH KL ELTI  Y G +F 
Sbjct: 719  VEDAQRANLNCKERLDSLVLEWS-HSSDTRETESAVLDMLQPHTKLKELTIKSYAGKEFS 777

Query: 366  IWLGDSLFSKLMLLKFDNCGTCTSLPSVGQLPFLKDPVISGMGRVKIVGSEFYGSSCSVS 425
             W+G  LFS ++L++ + C  C SLP +G+LP LK+  I GM  V+ VG+EFYG  CS+ 
Sbjct: 778  SWVGVPLFSNMVLVRLEECNNCLSLPPLGKLPHLKELYIRGMNAVESVGAEFYG-ECSLP 836

Query: 426  FPSLETLFFVDI----------------------------CSKLQGTLPERLLLLEKLNI 457
            FP LETL FVD+                            CSKL+G LPE L  L  L I
Sbjct: 837  FPLLETLEFVDMQHWKVWLPFQTDHRGSVFPCLKTLLVRKCSKLEGKLPENLDSLASLEI 896

Query: 458  FRCEQLLVTLQCLPALRELEIDGCKGVVLSSPTD----LSSLKLVHSRDMAK----EVFE 509
             +CE+LLV++     LR+L IDGCKGVV ++       L SL L +  ++      E+  
Sbjct: 897  VKCEELLVSIANYKQLRQLNIDGCKGVVHTAAKVEFELLESLYLSNISELTSLQTGELCR 956

Query: 510  QGLPKLERLEIQHVREQTYLWRSETRLPQDIRSLNRLQISRCPQLI-------------- 555
             GL  +  L+I    E T   ++E  L Q + SL RL+I     L+              
Sbjct: 957  NGLNMVRDLKINGCEELTSSLKNEAILLQQLISLGRLEIEDNSLLVEELGKEADELLQLQ 1016

Query: 556  ---------------------------SLLRTVKIEDCNALESLPEAWMHNSNSSLESLK 588
                                       S L+ ++I +C++L S P+  +     SL+ ++
Sbjct: 1017 ILGCKLEFLKLKKCKNLLKLPEGLNQLSSLQELRIHECSSLVSFPDVGLP---PSLKDIE 1073

Query: 589  IRSCNSLVSFPDFALPSQLRTVTIKGCDALESL--PEAWMQNSSTS---LESLAIDSCDS 643
            I  C+SL+ F    +P  LR + I+ C +L SL   EA    SS+S   LE L I+ C S
Sbjct: 1074 ITECHSLIYFAKSQIPQNLRRIQIRDCRSLRSLVDNEAVGSCSSSSHNCLEYLNIERCQS 1133

Query: 644  LTYIA-RIQLPPSLKRLIIFRCDNLRFNS------------LRKLKISGGCPDLVSSPRF 690
            LT ++   QL  +L+ L I+ C+ L F +            L   +I   C +L S PR 
Sbjct: 1134 LTLLSLSDQLVRALRELDIYDCEQLEFLAPDGLFCNNTNYFLENFRIR-RCQNLKSLPRL 1192

Query: 691  P-----ASLTELKISDMPSLERLSSIGENLTSLKFLDLD 724
                  ++L E++I+D   LE L     N  SL+ L +D
Sbjct: 1193 SGGIRGSNLREIRITDCDRLEALPEDMHNFNSLEKLIID 1231

Source: Malus x robusta

Species: Malus x robusta

Genus: Malus

Family: Rosaceae

Order: Rosales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224059590|ref|XP_002299922.1| cc-nbs-lrr resistance protein [Populus trichocarpa] gi|222847180|gb|EEE84727.1| cc-nbs-lrr resistance protein [Populus trichocarpa]

 Score =  461 bits (1186), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 322/877 (36%), Positives = 456/877 (51%), Gaps = 144/877 (16%)

Query: 6    YQKMTVCVCSLNMHQSLKEVGQKIAMKCKGLPLAAKTLGGLLRGKDDPKDWENVLKTEVW 65
            + K  +   + + +  LKE+G++I  +C+GLPLAAKTLGGLLRGK + K+W+ VL +++W
Sbjct: 336  FAKHALDASNFDDYPDLKEIGEEIVKRCRGLPLAAKTLGGLLRGKPNSKEWKAVLNSKMW 395

Query: 66   DLADDKCDIIPALRVSYHFLPPQLKQCFAYCSLFPKDHEFQKEQIILLWAAEGFLHQENS 125
            DL ++   I+PALR+SYH LP  LKQCFAYC++FPKD+EF K +++ LW AEGFL Q   
Sbjct: 396  DLPEENSGILPALRLSYHHLPSHLKQCFAYCAIFPKDYEFDKNELVSLWMAEGFLQQPKE 455

Query: 126  KRKMEDLGREFVEELHSRSLFHQSTYDASRFVMHDLINDLTRWAAGETCF----RMEDTP 181
            K++M+D+G+E+  +L SRS F QS+ +  R+VMHDLI++L ++ +GE CF    ++ED+P
Sbjct: 456  KKQMKDIGKEYFHDLLSRSFFQQSSANNVRYVMHDLISELAQFVSGEVCFHLGDKLEDSP 515

Query: 182  EGER---------RQNVLQR----------------------------------LLNLPR 198
               +         R ++ QR                                  + NL R
Sbjct: 516  SHAKVRHSSFTRHRYDISQRFEVFYEMKSLRTFLPLPIFSPPYNHLTSKVLHDLVPNLKR 575

Query: 199  LRVFSLRGYNIFELPKAIENLKHLRFLDLSTTKIEILRESINTLYNLHTLLLEDCRRLKK 258
            L V SL GY + ELP +I  LKHLR+L+LS T+IE+L ES+  ++ L TL L  C++L K
Sbjct: 576  LAVLSLAGYCLVELPSSICALKHLRYLNLSYTEIEVLPESLCEVFRLQTLGLRGCKKLIK 635

Query: 259  LCKDMGNLTKLHHLNNSNVGSLEEM----------------LM--------LKSLVHLQG 294
            L   + NL  L +L+ S   SL+EM                +M        L  L HLQG
Sbjct: 636  LPIGIDNLIDLQYLDISGTDSLQEMPPQIGNLTNLHTLPKFIMGKGLGIRELMKLSHLQG 695

Query: 295  TLEISRLENVKGVGDASEVQLNSKVNLKALYLQW--GVRDAVEPKTETQVIDMLKPHQKL 352
             L I+ L NV  V D     L  K  L  L L+W   V        E Q++++L+PHQ L
Sbjct: 696  QLNITGLHNVVDVQDTELAILKEKRGLSELSLEWIHNVNGFQSEARELQLLNLLEPHQTL 755

Query: 353  E-LTITGYGGTKFPIWLGDSLFSKLMLLKFDNCGTCTSLPSVGQLPFLKDPVISGMGRVK 411
            + L+I  YGGT FP WLGD  F+ ++ L+   C   TSLPS+GQLP L+D  I GM +V 
Sbjct: 756  QKLSIMSYGGTTFPSWLGDHSFTNMVCLQLRGCHKITSLPSLGQLPLLRDLSIKGMDKVT 815

Query: 412  IVGSEFYGSSCSV-SFPSLETLFFVDI------------------------------CSK 440
             VG+EF G   SV +FPSLE L   D+                              C  
Sbjct: 816  TVGAEFLGVGSSVKAFPSLEGLIIEDMLNWKQWSWSNGFNQEEVGEFPYLRELTIINCPM 875

Query: 441  LQGTLPERLLLLEKLNIFRCEQLLVTLQCLPALRELEIDGCKGVVLS--SPTDLSSLKL- 497
            L G LP  L  ++KL+I  C QL+   + LP L EL ++GC   +L+  S   L++LK+ 
Sbjct: 876  LAGKLPSHLPSVKKLSICNCPQLVALPEILPCLCELIVEGCNEAILNHKSLPSLTTLKVG 935

Query: 498  -VHSRDMAKEVFEQGLPKLERLEIQHVREQTYLWRSETRLPQDIRSLNRLQISRCPQLIS 556
             +      +  F Q +  L+ LEI++  +  YLW   T L  ++ S+  L+I +  QL+S
Sbjct: 936  SITGFFCLRSGFLQAMVALQDLEIENCNDLMYLWLDGTDL-HELASMKHLEIKKFEQLVS 994

Query: 557  LLRTVKIEDCNALESLPEAWMHNSNSSLESLKIRSCNSLVSFPDFALPSQLRTVTIKGCD 616
            L   V++E    LE LP         SL +LK+  C  LVSFP   LP  L+ + I  CD
Sbjct: 995  L---VELEKFGDLEQLPSGLQF--LGSLRNLKVDHCPKLVSFPG-GLPYTLQRLEISRCD 1048

Query: 617  ALESLPEAWM------QNSSTSLESLAIDSCDSLTYIARIQLPPSLKRLIIFRCDNLR-- 668
            +L+SLP+  +      ++S   LE L I  C SL  I R  LP +LK L I  C NL+  
Sbjct: 1049 SLKSLPDGMVITMNGRKSSQCLLEELLISWCPSLKSIPRGMLPITLKSLAISWCKNLKNL 1108

Query: 669  -------------FNSLRKLKISGGCPDLVSSPRFPASLTELKIS--DMPSLERLSSIGE 713
                          + L  L I G       +  FP SL  L+I      SLE L     
Sbjct: 1109 HGGIVYDGGDRTELSRLEHLTIEGLPLLPFPAFEFPGSLKTLEIGYCTTQSLESLC---- 1164

Query: 714  NLTSLKFLDLDNCPKLKYFSKQGL-PKSLLRLIIDEC 749
            +L+ L  L++  C  L+ F + GL   +L+ L I +C
Sbjct: 1165 DLSHLTELEISGCSMLESFPEMGLITPNLISLSIWKC 1201

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147852435|emb|CAN78523.1| hypothetical protein VITISV_023432 [Vitis vinifera]

 Score =  457 bits (1176), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 326/956 (34%), Positives = 469/956 (49%), Gaps = 206/956 (21%)

Query: 3    WECYQKMTVCVCSLNMHQSLKEVGQKIAMKCKGLPLAAKTLGGLLRGKDDPKDWENVLKT 62
            W  ++K      S++ H +L  +G++I  KC GLPLAA  LGGLJR +     W  +L +
Sbjct: 347  WSVFKKHAFGNSSIDEHSNLALIGKEIVKKCGGLPLAATALGGLJRHEHREDKWNVILTS 406

Query: 63   EVWDLADDKCDIIPALRVSYHFLPPQLKQCFAYCSLFPKDHEFQKEQIILLWAAEGFLHQ 122
            ++W L  DKC I+PALR+SY+ LP  LK+CF+YC++FPKD+EF K+++I LW AE  + +
Sbjct: 407  KIWHLPSDKCSILPALRLSYNHLPSPLKRCFSYCAIFPKDYEFDKKELIRLWMAESLIQR 466

Query: 123  ---ENSKRKMEDLGREFVEELHSRSLFHQSTYDASRFVMHDLINDLTRWAAGETCFRMED 179
               +  + ++E+LG +  +EL SRS F  S+ + S+FVMHDL+NDL +  AGE CF + +
Sbjct: 467  LECDGQQIEIENLGDDCFQELLSRSFFQPSSSNKSQFVMHDLVNDLAKSVAGEMCFSLAE 526

Query: 180  TPEGER----------------------------RQNVLQRLLNLP-------------- 197
              E  +                            R   L+  + LP              
Sbjct: 527  KLESSQPHIISKKARHSSFIRGPFDVFKKFEAFYRMEYLRTFIALPIDASWSYRWLSNKV 586

Query: 198  ---------RLRVFSLRGYNIFELPKAIENLKHLRFLDLSTTKIEILRESINTLYNLHTL 248
                     RLRV SL GY I E+P +I +LKHLR+L+LS T+++ L +SI  LYNL TL
Sbjct: 587  LEGLMPKLXRLRVLSLSGYQISEIPSSIGDLKHLRYLNLSGTRVKWLPDSIGNLYNLETL 646

Query: 249  LLEDCRRLKKLCKDMGNLTKLHHLNNSNVGSLEEMLM----------------------- 285
            +L  C +L +L   + NL  L HL+ ++  +LEEM +                       
Sbjct: 647  ILSYCSKLIRLPLSIENLNNLRHLDVTDT-NLEEMPLRICKLKSLQVLSKFIVGKDNGLN 705

Query: 286  ---LKSLVHLQGTLEISRLENVKGVGDASEVQLNSKVNLKALYLQW--GVRDAVEPKTET 340
               L+++ HLQG L IS LENV  V DA +  LN K  L+ L ++W  G+ D+   + + 
Sbjct: 706  VKELRNMPHLQGELCISNLENVANVQDARDASLNKKQKLEELTIEWSAGLDDSHNARNQI 765

Query: 341  QVIDMLKPHQKL-ELTITGYGGTKFPIWLGDSLFSKLMLLKFDNCGTCTSLPSVGQLPFL 399
             V+  L+PH  L +L I  YGG +FP W+GD  FSK++ +   NC  CTSLP +G LP L
Sbjct: 766  DVLGSLQPHFNLNKLKIENYGGPEFPPWIGDVSFSKMVDVNLVNCRNCTSLPCLGWLPML 825

Query: 400  KDPVISGMGRVKIVGSEFYGSSC--SVSFPSLETLFFVDI-------------------- 437
            K   I G+  VKIVG EFYG +C  +  FPSLE+L F D+                    
Sbjct: 826  KHVRIEGLKEVKIVGREFYGETCLPNKPFPSLESLSFSDMSQWEDWESPTLSEPYPCLLH 885

Query: 438  -----CSKLQGTLPERLLLLEKLNIFRCEQLLVTLQCLPALRELEIDGCKGVVLSSPTDL 492
                 C KL   LP  L  L  L+I  C Q +  L+ L +L +L +  C   VL S  +L
Sbjct: 886  LKIVDCPKLIKKLPTNLPSLVHLSILGCPQWVPPLERLSSLSKLRVKDCNEAVLRSGLEL 945

Query: 493  SSL-KLVHSRDMAKEVFEQG----LPKLERLEIQHVREQTYLWRSETRLPQDIRSLNRLQ 547
             SL +L   R +      +G    L  L+ L+I    E T LW +          + +LQ
Sbjct: 946  PSLTELRIERIVGLTRLHEGCMQLLSGLQVLDICGCDELTCLWEN------GFDGIQQLQ 999

Query: 548  ISRCPQLISL-----------LRTVKIEDCNALESLPEAWMHNSNSSLESLKIRSCNSLV 596
             S CP+L+SL           L+++ I  CN LE LP   +H   + L  L+I  C  LV
Sbjct: 1000 TSSCPELVSLGEKEKHEMPSKLQSLTISGCNNLEKLPNG-LHRL-TCLGELEIYGCPKLV 1057

Query: 597  SFPDFALPSQLRTVTIKGCDALESLPEAWM------QNSSTS---LESLAIDSCDSLTYI 647
            SFP+   P  LR + I GC+ L  LP+ WM       N+ +    LE L ID+C SL   
Sbjct: 1058 SFPELGFPPMLRRLVIVGCEGLRCLPD-WMMVMKDGSNNGSDVCLLEYLKIDTCPSLIGF 1116

Query: 648  ARIQLPPSLKRLIIFRCDNL--------RFNSLRKLKISGG--------CPDLVSSP--R 689
               +LP +LK+L I+ C+ L          +S      SGG        CP L   P  +
Sbjct: 1117 PEGELPTTLKQLRIWECEKLESLPGGMMHHDSNTTTATSGGLHVLDIWKCPSLTIFPTGK 1176

Query: 690  FPASLTELKISDMPSLERLSS--IGENLTSLKFLD------------------------- 722
            F ++L  L+I B   LE +S      N +SL++LB                         
Sbjct: 1177 FXSTLKTLEIWBCAQLESISEEMFHSNNSSLEYLBGQRPPILPTTLTXLSIXDFQNLKSL 1236

Query: 723  ---------------LDNCPKLKYF-SKQGLPKSLLRLIIDECPLIEKRCRKDKGK 762
                           +  CPKL+ F  ++GLP +L RL I +CPL+++RC K KG+
Sbjct: 1237 SSLXLQTLTSLEELXIXXCPKLZSFCPREGLPDTLSRLYIXDCPLLKQRCSKXKGQ 1292

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147819724|emb|CAN69227.1| hypothetical protein VITISV_007111 [Vitis vinifera]

 Score =  454 bits (1168), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 314/874 (35%), Positives = 444/874 (50%), Gaps = 164/874 (18%)

Query: 3    WECYQKMTVCVCSLNMHQSLKEVGQKIAMKCKGLPLAAKTLGGLLRGKDDPKDWENVLKT 62
            W  ++K      S++ H +L  +G++I  KC GLPLAA  LGGLLR +     W  +L +
Sbjct: 347  WSVFKKHAFGNSSIDEHSNLALIGKEIVKKCGGLPLAATALGGLLRHEQREDKWNVILTS 406

Query: 63   EVWDLADDKCDIIPALRVSYHFLPPQLKQCFAYCSLFPKDHEFQKEQIILLWAAEGFLH- 121
            ++WDL  DKC I+PALR+SY+ LP  LK+CF+YC++FPKD+EF K ++I LW AE  +  
Sbjct: 407  KIWDLPSDKCGILPALRLSYNHLPSPLKRCFSYCAIFPKDYEFDKRELIRLWMAESLIQC 466

Query: 122  --QENSKRKMEDLGREFVEELHSRSLFHQSTYDASRFVMHDLINDLTRWAAGETCFRMED 179
              +   + ++EDLG ++ +EL SRS F  S+ + S+FVMHDL+NDL ++  GE CF +E+
Sbjct: 467  PERYGRQIEIEDLGDDYFQELLSRSFFQPSSSNKSQFVMHDLVNDLAKFVGGEICFSLEE 526

Query: 180  TPEGERRQNV----------------------------LQRLLNLP-------------- 197
              EG ++Q +                            L+  + LP              
Sbjct: 527  NLEGNQQQTISKKARHSSFIRGRYDVFKKFEAFYGMEYLRTFIALPIDASWRCNWLSNKV 586

Query: 198  ---------RLRVFSLRGYNIFELPKAIENLKHLRFLDLSTTKIEILRESINTLYNLHTL 248
                     RLRV SL GY I E+P ++ +LKHLR+L+LS T ++ L +S+  L+NL TL
Sbjct: 587  LEGLMPKLQRLRVLSLSGYWISEIPSSVGDLKHLRYLNLSETGVKRLPDSLGNLHNLETL 646

Query: 249  LLEDCRRLKKLCKDMGNLTKLHHLNNSNVGSLEEMLM----------------------- 285
            +L +C RL +L   + NL  L HL+ +N  +LEEM +                       
Sbjct: 647  VLSNCWRLIRLPLSIENLNNLRHLDVTNT-NLEEMSLRICKLKSLQVLSKFIVGKDNGLN 705

Query: 286  ---LKSLVHLQGTLEISRLENVKGVGDASEVQLNSKVNLKALYLQW--GVRDAVEPKTET 340
               L+++ HLQG L IS LENV  V DA +  LN K  L+ L ++W  G+ D+   + + 
Sbjct: 706  VKELRNMPHLQGGLCISNLENVANVQDARDASLNKKQKLEELTIEWSAGLDDSHNARNQI 765

Query: 341  QVIDMLKPHQKL-ELTITGYGGTKFPIWLGDSLFSKLMLLKFDNCGTCTSLPSVGQLPFL 399
             V+D L+PH  L +L I  YGG +FP W+GD  FSK++ +   NC  CTSLP +G LP L
Sbjct: 766  DVLDSLQPHFNLNKLKIEYYGGPEFPRWIGDVSFSKMVDVNLVNCRNCTSLPCLGWLPML 825

Query: 400  KDPVISGMGRVKIVGSEFYGSSC--SVSFPSLETLFFVDI-------------------- 437
            K   I G+  VKIVG EFYG +C  +  FPSLE+L F D+                    
Sbjct: 826  KHVRIEGLKEVKIVGREFYGETCLPNKPFPSLESLSFSDMSQWEDWESPSLSEPYPCLLY 885

Query: 438  -----CSKLQGTLPERLLLLEKLNIFRCEQLLVTLQCLPALRELEIDGCKGVVLSSPTDL 492
                 C KL   LP  L  L  L+I+RC  L+  ++ LP+L +L ++ C   VL S  +L
Sbjct: 886  LEIVNCPKLIKKLPTYLPSLVHLSIWRCPLLVSPVERLPSLSKLRVEDCNEAVLRSGLEL 945

Query: 493  SSLKLVHSRDMA-----KEVFEQGLPKLERLEIQHVREQTYLWRSETRLPQDIRSLNRLQ 547
             SL  +    M       E   Q L  L+ L+I    E   LW +          L +LQ
Sbjct: 946  PSLTELGILRMVGLTRLHEWCMQLLSGLQVLDIDECDELMCLWEN------GFAGLQQLQ 999

Query: 548  ISRCPQLISL-----------LRTVKIEDCNALESLPEAWMHNSNSSLESLKIRSCNSLV 596
             S C +L+SL           L+++KI  CN LE LP   +H   + L  LKI +C  LV
Sbjct: 1000 TSNCLELVSLGKKEKHELPSKLQSLKIRRCNNLEKLPNG-LHRL-TCLGELKISNCPKLV 1057

Query: 597  SFPDFALPSQLRTVTIKGCDALESLPEAWM------QNSSTS---LESLAIDSCDSLTYI 647
             FP+   P  LR + I  C  L  LP+ WM       N+ +    LE L ID C SL   
Sbjct: 1058 LFPELGFPPMLRRLVIYSCKGLPCLPD-WMMVMKDGSNNGSDVCLLEYLEIDGCPSLIGF 1116

Query: 648  ARIQLPPSLKRLIIFRCDNLR--------------FNSLRKLKISGGCPDLVSSP--RFP 691
               +LP +LK L I+RC+NL                  L  L I G CP L   P  +FP
Sbjct: 1117 PEGELPATLKELRIWRCENLESLPGGIMHHDSNTTSYGLHALYI-GKCPSLTFFPTGKFP 1175

Query: 692  ASLTELKISDMPSLERLSS--IGENLTSLKFLDL 723
            ++L +L+I D   LE +S      N +SL++L +
Sbjct: 1176 STLKKLQIWDCAQLEPISEGMFHSNNSSLEYLSI 1209

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225450019|ref|XP_002272632.1| PREDICTED: putative disease resistance protein At3g14460 [Vitis vinifera] gi|451798996|gb|AGF69196.1| disease resistance protein At3g14460-like protein 3 [Vitis labrusca]

 Score =  453 bits (1166), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 314/874 (35%), Positives = 444/874 (50%), Gaps = 164/874 (18%)

Query: 3    WECYQKMTVCVCSLNMHQSLKEVGQKIAMKCKGLPLAAKTLGGLLRGKDDPKDWENVLKT 62
            W  ++K      S++ H +L  +G++I  KC GLPLAA  LGGLLR +     W  +L +
Sbjct: 347  WSVFKKHAFGNSSIDEHSNLALIGKEIVKKCGGLPLAATALGGLLRHEQREDKWNVILTS 406

Query: 63   EVWDLADDKCDIIPALRVSYHFLPPQLKQCFAYCSLFPKDHEFQKEQIILLWAAEGFLH- 121
            ++WDL  DKC I+PALR+SY+ LP  LK+CF+YC++FPKD+EF K ++I LW AE  +  
Sbjct: 407  KIWDLPSDKCGILPALRLSYNHLPSPLKRCFSYCAIFPKDYEFDKRELIRLWMAESLIQC 466

Query: 122  --QENSKRKMEDLGREFVEELHSRSLFHQSTYDASRFVMHDLINDLTRWAAGETCFRMED 179
              +   + ++EDLG ++ +EL SRS F  S+ + S+FVMHDL+NDL ++  GE CF +E+
Sbjct: 467  PERYGRQIEIEDLGDDYFQELLSRSFFQPSSSNKSQFVMHDLVNDLAKFVGGEICFSLEE 526

Query: 180  TPEGERRQNV----------------------------LQRLLNLP-------------- 197
              EG ++Q +                            L+  + LP              
Sbjct: 527  NLEGNQQQTISKKARHSSFIRGRYDVFKKFEAFYGMEYLRTFIALPIDASWRCNWLSNKV 586

Query: 198  ---------RLRVFSLRGYNIFELPKAIENLKHLRFLDLSTTKIEILRESINTLYNLHTL 248
                     RLRV SL GY I E+P ++ +LKHLR+L+LS T ++ L +S+  L+NL TL
Sbjct: 587  LEGLMPKLQRLRVLSLSGYWISEIPSSVGDLKHLRYLNLSETGVKRLPDSLGNLHNLETL 646

Query: 249  LLEDCRRLKKLCKDMGNLTKLHHLNNSNVGSLEEMLM----------------------- 285
            +L +C RL +L   + NL  L HL+ +N  +LEEM +                       
Sbjct: 647  VLSNCWRLIRLPLSIENLNNLRHLDVTNT-NLEEMSLRICKLKSLQVLSKFIVGKDNGLN 705

Query: 286  ---LKSLVHLQGTLEISRLENVKGVGDASEVQLNSKVNLKALYLQW--GVRDAVEPKTET 340
               L+++ HLQG L IS LENV  V DA +  LN K  L+ L ++W  G+ D+   + + 
Sbjct: 706  VKELRNMPHLQGGLCISNLENVANVQDARDASLNKKQKLEELTIEWSAGLDDSHNARNQI 765

Query: 341  QVIDMLKPHQKL-ELTITGYGGTKFPIWLGDSLFSKLMLLKFDNCGTCTSLPSVGQLPFL 399
             V+D L+PH  L +L I  YGG +FP W+GD  FSK++ +   NC  CTSLP +G LP L
Sbjct: 766  DVLDSLQPHFNLNKLKIEYYGGPEFPRWIGDVSFSKMVDVNLVNCRNCTSLPCLGWLPML 825

Query: 400  KDPVISGMGRVKIVGSEFYGSSC--SVSFPSLETLFFVDI-------------------- 437
            K   I G+  VKIVG EFYG +C  +  FPSLE+L F D+                    
Sbjct: 826  KHVRIEGLKEVKIVGREFYGETCLPNKPFPSLESLSFSDMSQWEDWESPSLSEPYPCLLY 885

Query: 438  -----CSKLQGTLPERLLLLEKLNIFRCEQLLVTLQCLPALRELEIDGCKGVVLSSPTDL 492
                 C KL   LP  L  L  L+I+RC  L+  ++ LP+L +L ++ C   VL S  +L
Sbjct: 886  LEIVNCPKLIKKLPTYLPSLVHLSIWRCPLLVSPVERLPSLSKLRVEDCNEAVLRSGLEL 945

Query: 493  SSLKLVHSRDMA-----KEVFEQGLPKLERLEIQHVREQTYLWRSETRLPQDIRSLNRLQ 547
             SL  +    M       E   Q L  L+ L+I    E   LW +          L +LQ
Sbjct: 946  PSLTELGILRMVGLTRLHEWCMQLLSGLQVLDIDECDELMCLWEN------GFAGLQQLQ 999

Query: 548  ISRCPQLISL-----------LRTVKIEDCNALESLPEAWMHNSNSSLESLKIRSCNSLV 596
             S C +L+SL           L+++KI  CN LE LP   +H   + L  LKI +C  LV
Sbjct: 1000 TSNCLELVSLGKKEKHELPSKLQSLKIRRCNNLEKLPNG-LHRL-TCLGELKISNCPKLV 1057

Query: 597  SFPDFALPSQLRTVTIKGCDALESLPEAWM------QNSSTS---LESLAIDSCDSLTYI 647
             FP+   P  LR + I  C  L  LP+ WM       N+ +    LE L ID C SL   
Sbjct: 1058 LFPELGFPPMLRRLVIYSCKGLPCLPD-WMMVMKDGSNNGSDVCLLEYLEIDGCPSLIGF 1116

Query: 648  ARIQLPPSLKRLIIFRCDNLR--------------FNSLRKLKISGGCPDLVSSP--RFP 691
               +LP +LK L I+RC+NL                  L  L I G CP L   P  +FP
Sbjct: 1117 PEGELPATLKELRIWRCENLESLPGGIMHHDSNTTSYGLHALYI-GKCPSLTFFPTGKFP 1175

Query: 692  ASLTELKISDMPSLERLSS--IGENLTSLKFLDL 723
            ++L +L+I D   LE +S      N +SL++L +
Sbjct: 1176 STLKKLQIWDCAQLEPISEGMFHSNNSSLEYLSI 1209

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147860511|emb|CAN79726.1| hypothetical protein VITISV_014536 [Vitis vinifera]

 Score =  449 bits (1156), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 319/941 (33%), Positives = 457/941 (48%), Gaps = 216/941 (22%)

Query: 19   HQSLKEVGQKIAMKCKGLPLAAKTLGGLLRGKDDPKDWENVLKTEVWDLADDKCDIIPAL 78
            H  LK +G+++  +C+GLPL AK LGG+LR + + + W+++LK+++WDL ++K  ++PAL
Sbjct: 362  HPHLKIIGEEMVNRCRGLPLVAKALGGILRNELNHEAWDDILKSKIWDLPEEKSGVLPAL 421

Query: 79   RVSYHFLPPQLKQCFAYCSLFPKDHEFQKEQIILLWAAEGFLHQENSKRKMEDLGREFVE 138
            ++SYH LP  LKQCFAYC++FPK +EF+K+++ILLW  EGFL Q   K++MEDLG ++  
Sbjct: 422  KLSYHHLPSHLKQCFAYCAIFPKGYEFKKDELILLWMGEGFLQQTKGKKRMEDLGSKYFS 481

Query: 139  ELHSRSLFHQSTYDASRFVMHDLINDLTRWAAGETCFRMEDTPEGERRQNVLQR------ 192
            EL SRS F QS+    RF+MHDLI+DL +  AG  C  +ED  + E  +N+ Q+      
Sbjct: 482  ELLSRSFFQQSSNIMPRFMMHDLIHDLAQSIAGNVCLNLED--KLENNENIFQKARHLSF 539

Query: 193  -----------------------------------------------LLNLPRLRVFSLR 205
                                                           L+ +  LRV SL 
Sbjct: 540  IRQANEIFKKFEVVDKGKYLRTFLALPISVSFMKSLSFITTKVTHDLLMEMKCLRVLSLS 599

Query: 206  GYNIFELPKAIENLKHLRFLDLSTTKIEILRESINTLYNLHTLLLEDCRRLKKLCKDMGN 265
            GY + +LP +I+NL HLR+L+L  + I+ L  S+  LYNL TL+L DC  L ++   MGN
Sbjct: 600  GYKMSDLPSSIDNLSHLRYLNLCRSSIKRLPNSVGHLYNLQTLILRDCWSLTEMPVGMGN 659

Query: 266  LTKLHHLNNSNVGSLEEM--------------------------LMLKSLVHLQGTLEIS 299
            L  L HL+ +    LEEM                            LK L+ LQG L I 
Sbjct: 660  LINLRHLDIAGTSQLEEMPPRMGSLTNLQTLSKFXVGKGNGSSIQELKHLLDLQGELSIQ 719

Query: 300  RLENVKGVGDASEVQLNSKVNLKALYLQWG--VRDAVEPKTETQVIDMLKPHQKL-ELTI 356
             L NV+   DA +  L +K +++ L + W     D+     E  V+++L+P + L +LT+
Sbjct: 720  GLHNVRNTRDAMDACLKNKCHIEELTMGWSGDFDDSRNELNEMLVLELLQPQRNLKKLTV 779

Query: 357  TGYGGTKFPIWLGDSLFSKLMLLKFDNCGTCTSLPSVGQLPFLKDPVISGMGRVKIVGSE 416
              YGG KFP W+G+  FSK+  L   NCG CTSLP +G+L  LK   I GM +VK +G E
Sbjct: 780  EFYGGPKFPSWIGNPSFSKMESLTLKNCGKCTSLPCLGRLSLLKALRIQGMCKVKTIGDE 839

Query: 417  FYGS-SCSVSFPSLETLFFVDI-----------------------------CSKLQGTLP 446
            F+G  S    FP LE+L F D+                             C KL G+LP
Sbjct: 840  FFGEVSLFQPFPCLESLRFEDMPEWEDWCFSDMVEECEGLFSCLRELRIRECPKLTGSLP 899

Query: 447  ERLLLLEKLNIFRCEQLLVTLQCLPALRELEIDGCKGVVLSSPTDLSSLKLVHSRDMA-- 504
              L  L +L IF C +L   L  L  +  L +  C  VVL +  DLSSL  ++ + ++  
Sbjct: 900  NCLPSLAELEIFECPKLKAALPRLAYVCSLNVVECNEVVLRNGVDLSSLTTLNIQRISRL 959

Query: 505  ---KEVFEQGLPKLERLEIQHVREQTYLWRS-------------------------ETRL 536
               +E F Q L  L++L I+   E T LW +                         E RL
Sbjct: 960  TCLREGFTQLLAALQKLVIRGCGEMTSLWENRFGLECLRGLESIDIWQCHGLVSLEEQRL 1019

Query: 537  P---------------------QDIRSLNRLQISRCPQLIS--------LLRTVKIEDCN 567
            P                     Q +  L  L +  CP+L S        +LR++ ++ CN
Sbjct: 1020 PCNLKHLKIENCANLQRLPNGLQRLTCLEELSLQSCPKLESFPEMGLPPMLRSLVLQKCN 1079

Query: 568  ALESLPEAWMHNSNSS-LESLKIRSCNSLVSFPDFALPSQLRTVTIKGCDALESLPEAWM 626
             L+ LP    HN NS  LE L+I  C  L+SFP+  LP+ L+ + IK C  L++LPE  M
Sbjct: 1080 TLKLLP----HNYNSGFLEYLEIEHCPCLISFPEGELPASLKQLKIKDCANLQTLPEGMM 1135

Query: 627  Q------NSSTSLESLAIDSCDSLTYIARIQLPPSLKRLIIFRCDNLR---------FNS 671
                   N+S  LE L I  C SL  +   +LP +LKRL I+ C   +           +
Sbjct: 1136 HHNSMVSNNSCCLEVLEIRKCSSLPSLPTGELPSTLKRLEIWDCRQFQPISEKMLHSNTA 1195

Query: 672  LRKLKISG--------------------GCPDLVSSPR--FPA-SLTELKISDMPSLERL 708
            L  L IS                     GC  LVS P    P  +L +L I++  +L+ L
Sbjct: 1196 LEHLSISNYPNMKILPGXLHSLTYLYIYGCQGLVSFPERGLPTPNLRDLYINNCENLKSL 1255

Query: 709  SSIGENLTSLKFLDLDNCPKLKYFSKQGLPKSLLRLIIDEC 749
                +NL SL+ L++ NC  L+ F + GL  +L  L I +C
Sbjct: 1256 PHQMQNLLSLQELNIRNCQGLESFPECGLAPNLTSLSIRDC 1296

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359495083|ref|XP_003634908.1| PREDICTED: putative disease resistance protein At3g14460-like [Vitis vinifera]

 Score =  449 bits (1156), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 321/911 (35%), Positives = 453/911 (49%), Gaps = 163/911 (17%)

Query: 6    YQKMTVCVCSLNMHQSLKEVGQKIAMKCKGLPLAAKTLGGLLRGKDDPKDWENVLKTEVW 65
            + K      + N+ Q L+ +G++I  KC+GLPLAAK+LG LL  K+D   W  VL   +W
Sbjct: 353  FAKHAFAHMNTNIRQKLEPIGEEIVKKCRGLPLAAKSLGSLLHTKEDENAWNEVLNNGIW 412

Query: 66   DLADDKCDIIPALRVSYHFLPPQLKQCFAYCSLFPKDHEFQKEQIILLWAAEGFLHQENS 125
            D   ++ DI+PAL +SYH+LP  LK+CFAYCS+FPKD++F+K  ++LLW AEG L     
Sbjct: 413  DFQIERSDILPALYLSYHYLPTNLKRCFAYCSIFPKDYKFEKRNLVLLWMAEGLLGGSKR 472

Query: 126  KRKMEDLGREFVEELHSRSLFHQSTYDASRFVMHDLINDLTRWAAGETCFRMEDTPEGE- 184
            +  +ED G    + L SRS F Q++ D S F+MHDLI+DL ++ +G+ C  ++D  + + 
Sbjct: 473  EETIEDYGNMCFDNLLSRSFFQQASDDESIFLMHDLIHDLAQFVSGKFCSSLDDEKKSQI 532

Query: 185  ---RRQNVLQR--------------------------------------------LLNLP 197
                R +   R                                            L  L 
Sbjct: 533  SKQTRHSSYVRAEQFELSKKFDPFYEAHNLRTFLPVHTGHQYGRIFLSKKVSDLLLPTLK 592

Query: 198  RLRVFSLRGYNIFELPKAIENLKHLRFLDLSTTKIEILRESINTLYNLHTLLLEDCRRLK 257
             LRV SL  Y+I ELP +I  LKHLR+LDLS T I  L ESI  L+NL TL+L +C  L 
Sbjct: 593  CLRVLSLAHYHIVELPHSIGTLKHLRYLDLSRTSIRRLPESITNLFNLQTLMLSNCISLT 652

Query: 258  KLCKDMGNLTKLHHLNNSNVGSLEEMLM--------------------------LKSLVH 291
             L  +MG L  L HL+ +N   L+EM M                          L+ + H
Sbjct: 653  HLPTEMGKLINLQHLDITNT-ILKEMPMGMKGLKRLRTLTAFVVGEDRGAKIKELRDMSH 711

Query: 292  LQGTLEISRLENVKGVGDASEVQLNSKVNLKALYLQW-GVRDAVEPKTETQVIDMLKPHQ 350
            L G L IS+L+NV    D  E  L  K  L  L +QW G   A + + ET V++ L+PH 
Sbjct: 712  LGGRLCISKLQNVVDAMDVFEANLKGKERLDELVMQWDGEATARDLQKETTVLEKLQPHN 771

Query: 351  KL-ELTITGYGGTKFPIWLGDSLFSKLMLLKFDNCGTCTSLPSVGQLPFLKDPVISGMGR 409
             L ELTI  Y G KFP WL +  F+ ++ ++  +C  C+SLPS+GQL  LK+  I  +  
Sbjct: 772  NLKELTIEYYCGEKFPNWLSEHSFTNMVSMQLHDCKNCSSLPSLGQLGSLKELSIMRIDG 831

Query: 410  VKIVGSEFYGSSCSVSFPSLETL--------------------------FFVDICSKLQG 443
            V+ VG EFYG+  S SF   E L                           ++  C KL+ 
Sbjct: 832  VQKVGQEFYGNIGSSSFKPFEALEILRFEEMLEWEEWVCREIEFPCLKELYIKKCPKLKK 891

Query: 444  TLPERLLLLEKLNIFRCEQLLVTLQCLPALRELEIDGCKGVVLSSPTDLSSLKLVHSRDM 503
             LP+ L  L KL I  C+QL+  L   P++R+LE++ C  VV+ S   L+SL  +   ++
Sbjct: 892  DLPKHLPKLTKLEIRECKQLVCCLPMAPSIRKLELEKCDDVVVRSAGSLTSLASLDISNV 951

Query: 504  AKEVFEQGLPKLERLEIQHVREQTYLWRSETR----LPQDIRSLNRLQISRCPQLIS--- 556
             K   E G       ++  + E   L+  E +    +  ++ SL  L++  C  L S   
Sbjct: 952  CKIPDELG-------QLHSLVELYVLFCPELKEIPPILHNLTSLKDLKVENCESLASFPE 1004

Query: 557  -----LLRTVKIEDCNALESLPEAWM---------------------------HNSNSSL 584
                 +L +++I  C  LESLPE  +                           H   +SL
Sbjct: 1005 MALPPMLESLQIFSCPILESLPEGMIASFTKLETLHLWNCTNLESLYIRDGLHHMDLTSL 1064

Query: 585  ESLKIRSCNSLVSFPDFALPS-QLRTVTIKGCDALESLPEAWMQNSSTSLESLAIDSCDS 643
            +SL I +C +LVSFP   LP+  LR + I  C+ L+SLP+  M    TSLE L I+ C  
Sbjct: 1065 QSLDIWNCPNLVSFPRGGLPTPNLRWLGIYNCEKLKSLPQG-MHTLLTSLELLTIEGCPE 1123

Query: 644  LTYIARIQLPPSLKRLIIFRCDNL----------RFNSLRKLKISGGCPDLVSSPRF-PA 692
            +       LP +L  L I  C+ L              LR L+I G   +     RF P+
Sbjct: 1124 IDSFPEGGLPTNLSSLYIVNCNKLLACRMEWGLQTLPFLRTLQIGGYEKERFPEERFLPS 1183

Query: 693  SLTELKISDMPSLERLSSIG-ENLTSLKFLDLDNCPKLKYFSKQGLPKSLLRLIIDECPL 751
            +LT L+I   P+L+ L + G ++LTSL+ L++  C  LK F KQGLP SL RL I ECPL
Sbjct: 1184 TLTSLEIRGFPNLKSLDNKGLQHLTSLETLEIWKCGNLKSFPKQGLPSSLSRLYIGECPL 1243

Query: 752  IEKRCRKDKGK 762
            + KRC++DKGK
Sbjct: 1244 LRKRCQRDKGK 1254

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|284026888|gb|ADB66335.1| CC-NBS-LRR protein [Quercus suber]

 Score =  448 bits (1153), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 312/842 (37%), Positives = 440/842 (52%), Gaps = 152/842 (18%)

Query: 25   VGQKIAMKCKGLPLAAKTLGGLLRGKDDPKDWENVLKTEVWDLADDKCDIIPALRVSYHF 84
            + ++I  +C+GLPLAA+TLGGL RGK+   +WE+++ +++W  ++   DI P LR+SYH 
Sbjct: 359  IRERILERCRGLPLAARTLGGLFRGKE-LDEWEDIMNSKLWSSSNMGSDIFPILRLSYHH 417

Query: 85   LPPQLKQCFAYCSLFPKDHEFQKEQIILLWAAEGFLHQENSKRKMEDLGREFVEELHSRS 144
            LP  LK+CFAYCSLFP+D+EF+++Q+ILLW AEG ++Q    + MEDLG E+  +L SRS
Sbjct: 418  LPHHLKRCFAYCSLFPRDYEFEEKQLILLWMAEGLIYQAEGDKPMEDLGGEYFRDLLSRS 477

Query: 145  LFHQSTYDASRFVMHDLINDLTRWAAGETCFRMEDTPEGERRQNVL-------------- 190
             F QS+ + SRFVMHDLI DL +W AG + FR+E   +G  +  V               
Sbjct: 478  FFQQSSSNKSRFVMHDLITDLAQWVAGISYFRLETKLKGNEQSKVSSKARHLSFVGSRYD 537

Query: 191  ------------------------------------QRLLNLPRLRVFSLRGYNIFELPK 214
                                                Q L  L  LRV SL GY I  LP+
Sbjct: 538  GAKKFEAISEFKHLRTFLPLMAPYVGYSYLSYHIINQLLPKLQNLRVLSLSGYRIVYLPQ 597

Query: 215  AIENLKHLRFLDLSTTKIEILRESINTLYNLHTLLLEDCRRLKKLCKDMGNLTKLHHLN- 273
             I +LKHLR+LDLS T++  L  SI+TLYNL TLLLE+C  LK L  D G L  L HLN 
Sbjct: 598  TIGDLKHLRYLDLSCTQLRSLPTSISTLYNLQTLLLENCTSLKFLPPDFGKLFNLRHLNI 657

Query: 274  -NSN--------VGSLEEMLMLKS-----------------LVHLQGTLEISRLENVKGV 307
              SN        +G+L  +  L +                 LVHL+GTL IS+LENV   
Sbjct: 658  FGSNLLEGMPLSIGNLSSLQTLSNFVVGKADSFCVIRELGPLVHLRGTLCISKLENVTKA 717

Query: 308  GDASEVQLNSKVNLKALYLQW--GVRDAVEPKTETQVIDMLKPHQKL-ELTITGYGGTKF 364
             +A +  L  K +L  + ++W   + ++ + +T+ +V++ML+P+ KL ELT+  YGGTKF
Sbjct: 718  QEARDSYLYGKQDLNEVVMEWSSNLNESQDEETQLEVLNMLQPNVKLKELTVKCYGGTKF 777

Query: 365  PIWLGDSLFSKLMLLKFDNCGTCTSLPSVGQLPFLKDPVISGMGRVKIVGSEFYGSSCSV 424
            P W+GD  FS L+LL+F+NC  C SLP VGQLPFLKD +I GM  VK VG EFYG SCS 
Sbjct: 778  PTWIGDPSFSNLVLLRFENCDNCNSLPPVGQLPFLKDLLIKGMAGVKSVGREFYGESCSR 837

Query: 425  SFPSLETLFFVDI-------------------------CSKLQGTLPERLLLLEKLNIFR 459
             F SLETL F D+                         C  L   LP+ L  L+KL I  
Sbjct: 838  PFQSLETLHFEDMPRWVNWIPLGVNEAFACLHKLSIIRCHNLVRKLPDHLPSLKKLVIHG 897

Query: 460  CEQLLVTLQCLPALRELEIDGCK------GVVLSSPTDLSSLKLVHSRDMAKEVFEQGLP 513
            C  ++V++  LP L  L I+GCK       V   SP  ++  K+    + A      G+ 
Sbjct: 898  CWNMVVSVSNLPMLCVLVIEGCKRVECESSVGFGSPYSMAFSKISEFGN-ATAGLMHGVS 956

Query: 514  KLERLEIQHVREQTYLWRSETRLPQDIRSLNRLQISRCPQLI--------SLLRTVKIED 565
            K+E L+I    + T LW         ++ L  L I  CP L+        S+L+ ++I+ 
Sbjct: 957  KVEYLKIVDSEKLTTLWEKIPEGLHRLKFLRELSIEDCPTLVSFPASGFPSMLKVIQIKS 1016

Query: 566  CNALES-LPEAWMHN-SNSSLESLKIRSCNSLVSFPDFALPSQLRTVTIKGCDALESL-- 621
            C+ L+S LPE  +H+  N+ LE L +  C+S+ S     LP+ L+ + I  C  L+ +  
Sbjct: 1017 CSGLKSLLPEGTLHSRENACLERLCVVRCDSMKSIARGQLPTTLKKLEISHCMNLQCVLD 1076

Query: 622  ------------PEAWMQNSSTSLESLAIDSCDSLTYI-ARIQLPPSLKRLIIFRCDNLR 668
                         E     S T L+ L I SC SLT + +  +LP +L  L++  C  L 
Sbjct: 1077 EGEGSSSSSGMHDEDINNRSKTHLQYLDIKSCPSLTTLTSSGKLPATLTHLLLRECPKLM 1136

Query: 669  FNSLRKLKISGGCPDLVSSPRFPASLTELKISDMPSLERLSSIGENLTSLKFLDLDNCPK 728
                        C  L S+ + PA+L  L+I  +  L++++      TSL+ + + NC  
Sbjct: 1137 ------------C--LSSTGKLPAALQYLEIQSISKLQKIAERLHQNTSLECIKIWNCHG 1182

Query: 729  LK 730
            LK
Sbjct: 1183 LK 1184

Source: Quercus suber

Species: Quercus suber

Genus: Quercus

Family: Fagaceae

Order: Fagales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	763
TAIR|locus:2091672	1054	AT3G14470 [Arabidopsis thalian	0.228	0.165	0.463	3.7e-66
TAIR|locus:2091662	1424	AT3G14460 [Arabidopsis thalian	0.407	0.218	0.334	1.4e-52
UNIPROTKB|O48647	1802	O48647 "XA1" [Oryza sativa (ta	0.188	0.079	0.409	8.9e-36
TAIR|locus:2034770	894	SUMM2 "AT1G12280" [Arabidopsis	0.410	0.350	0.283	2e-24
TAIR|locus:2201986	885	RFL1 "AT1G12210" [Arabidopsis	0.402	0.346	0.263	3e-23
TAIR|locus:2005517	909	RPS2 "RESISTANT TO P. SYRINGAE	0.196	0.165	0.283	3e-22
TAIR|locus:2036214	851	AT1G15890 [Arabidopsis thalian	0.217	0.195	0.308	3.6e-22
TAIR|locus:2166320	888	AT5G63020 [Arabidopsis thalian	0.216	0.185	0.310	5.4e-22
TAIR|locus:2136447	985	AT4G27190 [Arabidopsis thalian	0.209	0.162	0.315	6.8e-22
TAIR|locus:2132741	892	AT4G10780 [Arabidopsis thalian	0.403	0.345	0.260	2.3e-21

TAIR|locus:2091672 AT3G14470 [Arabidopsis thaliana (taxid:3702)]

 Score = 455 (165.2 bits), Expect = 3.7e-66, Sum P(2) = 3.7e-66
 Identities = 82/177 (46%), Positives = 121/177 (68%)

Query:     3 WECYQKMTVCVCSLNMHQSLKEVGQKIAMKCKGLPLAAKTLGGLLRGKDDPKDWENVLKT 62
             W  + K         +++ + ++ ++I  KC+GLPLA KTLGG+LR +    +WE VL +
Sbjct:   340 WSLFMKTVFGNQEPCLNREIGDLAERIVHKCRGLPLAVKTLGGVLRFEGKVIEWERVLSS 399

Query:    63 EVWDLADDKCDIIPALRVSYHFLPPQLKQCFAYCSLFPKDHEFQKEQIILLWAAEGFLHQ 122
              +WDL  DK +++P LRVSY++LP  LK+CFAYCS+FPK H F+K++++LLW AEGFL Q
Sbjct:   400 RIWDLPADKSNLLPVLRVSYYYLPAHLKRCFAYCSIFPKGHAFEKDKVVLLWMAEGFLQQ 459

Query:   123 ENSKRKMEDLGREFVEELHSRSLFHQSTYDASRFVMHDLINDLTRWAAGETCFRMED 179
               S + +E+LG E+  EL SRSL  Q T   +R++MHD IN+L ++A+GE   + ED
Sbjct:   460 TRSSKNLEELGNEYFSELESRSLL-QKT--KTRYIMHDFINELAQFASGEFSSKFED 513

GO:0005576 "extracellular region" evidence=ISM

GO:0006952 "defense response" evidence=IEA;ISS

GO:0043531 "ADP binding" evidence=IEA

GO:0005515 "protein binding" evidence=IPI

GO:0009627 "systemic acquired resistance" evidence=RCA

GO:0009697 "salicylic acid biosynthetic process" evidence=RCA

TAIR|locus:2091662 AT3G14460 [Arabidopsis thaliana (taxid:3702)]

 Score = 411 (149.7 bits), Expect = 1.4e-52, Sum P(2) = 1.4e-52
 Identities = 110/329 (33%), Positives = 171/329 (51%)

Query:     3 WECYQKMTVCVCSL-NMHQSLKEVGQKIAMKCKGLPLAAKTLGGLLRGKDDPKDWENVLK 61
             WE   +      S+ +++Q L+ +G++IA +CKGLPLAA+ +   LR K +P DW  V K
Sbjct:   335 WELISRFAFGNISVGSINQELEGIGKRIAEQCKGLPLAARAIASHLRSKPNPDDWYAVSK 394

Query:    62 TEVWDLADDKCDIIPALRVSYHFLPPQLKQCFAYCSLFPKDHEFQKEQIILLWAAEGFLH 121
                 + +     I+P L++SY  LPPQLK+CFA CS+FPK H F +E+++LLW A   L+
Sbjct:   395 ----NFSSYTNSILPVLKLSYDSLPPQLKRCFALCSIFPKGHVFDREELVLLWMAIDLLY 450

Query:   122 QENSKRKMEDLGREFVEELHSRSLFHQSTYDASRFVMHDLINDLTRWAAGETCFRMEDT- 180
             Q  S R++ED+G +++ +L ++S F +     + FVMHDL+NDL +  +G+ CFR+ED  
Sbjct:   451 QPRSSRRLEDIGNDYLGDLVAQSFFQRLDITMTSFVMHDLMNDLAKAVSGDFCFRLEDDN 510

Query:   181 -PE-GEXXXXXXXXXXXXXXXXXF-SLRGYNIFELPKAIENLKHLRFLDLSTTKIEILRE 237
              PE                    F S+ G           +   L  L L T K+  L  
Sbjct:   511 IPEIPSTTRHFSFSRSQCDASVAFRSICGAEFLRTILPFNSPTSLESLQL-TEKV--LNP 567

Query:   238 SINTLYNLHTLLLEDCRRLKKLCKDMGNLTKLHHLNNSNVGSLEEMLMLKSLVHLQGTLE 297
              +N L  L  L L   + +  L K +  L  L +L+ S+    E    + +L +LQ TL 
Sbjct:   568 LLNALSGLRILSLSHYQ-ITNLPKSLKGLKLLRYLDLSSTKIKELPEFVCTLCNLQ-TLL 625

Query:   298 ISRLENVKGVGDASEVQLNSKVNLKALYL 326
             +S   ++  +   S  +L   +NL+ L L
Sbjct:   626 LSNCRDLTSL-PKSIAEL---INLRLLDL 650

GO:0005634 "nucleus" evidence=ISM

GO:0006952 "defense response" evidence=IEA;ISS

GO:0043531 "ADP binding" evidence=IEA

UNIPROTKB|O48647 O48647 "XA1" [Oryza sativa (taxid:4530)]

 Score = 287 (106.1 bits), Expect = 8.9e-36, Sum P(3) = 8.9e-36
 Identities = 61/149 (40%), Positives = 92/149 (61%)

Query:    22 LKEVGQKIAMKCKGLPLAAKTLGGLLRGKDDPKDWENVLKTEVWDLADDKCDIIPALRVS 81
             L+ +G++IA + KG PLAAKT+G LL        W++++K+E W        I+ AL++S
Sbjct:   490 LQVLGKQIASELKGNPLAAKTVGSLLGTNLTIDHWDSIIKSEEWKSLQQAYGIMQALKLS 549

Query:    82 YHFLPPQLKQCFAYCSLFPKDHEFQKEQIILLWAAEGFLHQENSKRKMEDLGREFVEELH 141
             Y  L   L+QC +YCSLFPK + F K Q+I +W A+GF+  E S  K+E  G +++ EL 
Sbjct:   550 YDHLSNPLQQCVSYCSLFPKGYSFSKAQLIQIWIAQGFV--EESSEKLEQKGWKYLAELV 607

Query:   142 SRSLFHQ--ST-YDASRFVMHDLINDLTR 167
             +     Q  ST + +  FVMHDL++DL +
Sbjct:   608 NSGFLQQVESTRFSSEYFVMHDLMHDLAQ 636

GO:0006915 "apoptotic process" evidence=IGI

GO:0006952 "defense response" evidence=IGI

TAIR|locus:2034770 SUMM2 "AT1G12280" [Arabidopsis thaliana (taxid:3702)]

 Score = 265 (98.3 bits), Expect = 2.0e-24, Sum P(2) = 2.0e-24
 Identities = 95/335 (28%), Positives = 154/335 (45%)

Query:     3 WECYQKMTVCVCSLNMHQSLKEVGQKIAMKCKGLPLAAKTLGGLLRGKDDPKDWEN---V 59
             WE +Q M V   +L  H  + E+ +K+A KC GLPLA   +G  +  K   ++W N   V
Sbjct:   319 WELFQ-MKVGENTLKGHPDIPELARKVAGKCCGLPLALNVIGETMACKRMVQEWRNAIDV 377

Query:    60 LKTEVWDLADDKCDIIPALRVSYHFL-PPQLKQCFAYCSLFPKDHEFQKEQIILLWAAEG 118
             L +   +    +  I+P L+ SY  L   Q+K CF YCSLFP+D+  +KE++I  W  EG
Sbjct:   378 LSSYAAEFPGME-QILPILKYSYDNLNKEQVKPCFLYCSLFPEDYRMEKERLIDYWICEG 436

Query:   119 FLHQENSKRKMEDLGREFVEELHSRSLFHQSTYDASRFVMHDLINDLTRWAAGETCFRME 178
             F+ +  S+ +    G E +  L    L  +   +  +  MHD++ ++  W A +     E
Sbjct:   437 FIDENESRERALSQGYEIIGILVRACLLLEEAINKEQVKMHDVVREMALWIASDLGEHKE 496

Query:   179 DT-PEGEXXXXXXXXXXXXXXXXXFSLRGYNIFEL---PKAIENLKHLRFLDLSTTKIEI 234
                 +                    SL    I  L   P+ +E L  L FL  + + + I
Sbjct:   497 RCIVQVGVGLREVPKVKNWSSVRRMSLMENEIEILSGSPECLE-LTTL-FLQKNDSLLHI 554

Query:   235 LRESINTLYNLHTLLLEDCRRLKKLCKDMGNLTKLHHLNNS--NVGSLEEMLM-LKSLVH 291
               E    +  L  L L     L+KL   +  L  L +L+ S   +  L   L  LK L +
Sbjct:   555 SDEFFRCIPMLVVLDLSGNSSLRKLPNQISKLVSLRYLDLSWTYIKRLPVGLQELKKLRY 614

Query:   292 LQGTLE-ISRLENVKGVGDASEVQ----LNSKVNL 321
             L+  L+ + RL+++ G+ + S ++    L SK++L
Sbjct:   615 LR--LDYMKRLKSISGISNISSLRKLQLLQSKMSL 647

GO:0006952 "defense response" evidence=IGI;ISS

GO:0043531 "ADP binding" evidence=IEA

TAIR|locus:2201986 RFL1 "AT1G12210" [Arabidopsis thaliana (taxid:3702)]

 Score = 276 (102.2 bits), Expect = 3.0e-23, Sum P(2) = 3.0e-23
 Identities = 85/323 (26%), Positives = 149/323 (46%)

Query:     3 WECYQKMTVCVCSLNMHQSLKEVGQKIAMKCKGLPLAAKTLGGLLRGKDDPKDWENVLK- 61
             W+  +K  V   +L  H  + ++ +K++ KC GLPLA   +G  +  K   ++W +  + 
Sbjct:   319 WDLLKKK-VGENTLGSHPDIPQLARKVSEKCCGLPLALNVIGETMSFKRTIQEWRHATEV 377

Query:    62 -TEVWDLADDKCDIIPALRVSYHFLPPQ-LKQCFAYCSLFPKDHEFQKEQIILLWAAEGF 119
              T   D +  + +I+P L+ SY  L  +  K CF YCSLFP+D E +KE +I  W  EGF
Sbjct:   378 LTSATDFSGMEDEILPILKYSYDSLNGEDAKSCFLYCSLFPEDFEIRKEMLIEYWICEGF 437

Query:   120 LHQENSKRKMEDLGREFVEELHSRSLFHQSTYDASRFVMHDLINDLTRWAAGETCFRMED 179
             + ++  + K  + G + +  L   SL  +   D     MHD++ ++  W   +     E 
Sbjct:   438 IKEKQGREKAFNQGYDILGTLVRSSLLLEGAKDKDVVSMHDMVREMALWIFSDLGKHKER 497

Query:   180 T-PEGEXXXXXXXXXXXXXXXXXFSLRGYNIFEL---PKAIENLKHLRFLDLSTTKIEIL 235
                +                    SL   N  ++   P+ +E +    FL  +   ++I 
Sbjct:   498 CIVQAGIGLDELPEVENWRAVKRMSLMNNNFEKILGSPECVELIT--LFLQNNYKLVDIS 555

Query:   236 RESINTLYNLHTLLLEDCRRLKKLCKDMGNLTKLHHLNNSN--VGSLEEMLM-LKSLVHL 292
              E    + +L  L L +   L +L +++  L  L +L+ S   +  L   L  L+ LVHL
Sbjct:   556 MEFFRCMPSLAVLDLSENHSLSELPEEISELVSLQYLDLSGTYIERLPHGLHELRKLVHL 615

Query:   293 QGTLEISR-LENVKGVGDASEVQ 314
             +  LE +R LE++ G+   S ++
Sbjct:   616 K--LERTRRLESISGISYLSSLR 636

GO:0005575 "cellular_component" evidence=ND

GO:0006952 "defense response" evidence=IEA;ISS

GO:0043531 "ADP binding" evidence=IEA

GO:0009617 "response to bacterium" evidence=ISS

GO:0006499 "N-terminal protein myristoylation" evidence=RCA

TAIR|locus:2005517 RPS2 "RESISTANT TO P. SYRINGAE 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 187 (70.9 bits), Expect = 3.0e-22, Sum P(3) = 3.0e-22
 Identities = 44/155 (28%), Positives = 76/155 (49%)

Query:    21 SLKEVGQKIAMKCKGLPLAAKTLGGLLRGKDDPKDWENVLKTEVWDLADDKCD--IIPAL 78
             S++ + + I  KC GLPLA  TLGG +  ++  ++W +  +      A+ K    +   L
Sbjct:   333 SIRRLAEIIVSKCGGLPLALITLGGAMAHRETEEEWIHASEVLTRFPAEMKGMNYVFALL 392

Query:    79 RVSYHFLPPQL-KQCFAYCSLFPKDHEFQKEQIILLWAAEGFLHQENSKRKMEDLGREFV 137
             + SY  L   L + CF YC+LFP++H  + EQ++  W  EGFL   +    +   G   +
Sbjct:   393 KFSYDNLESDLLRSCFLYCALFPEEHSIEIEQLVEYWVGEGFLTSSHGVNTIYK-GYFLI 451

Query:   138 EELHSRSLFHQSTYDASRFVMHDLINDLTRWAAGE 172
              +L +  L      + ++  MH+++     W A E
Sbjct:   452 GDLKAACLLETGD-EKTQVKMHNVVRSFALWMASE 485

GO:0000166 "nucleotide binding" evidence=IEA

GO:0006952 "defense response" evidence=ISS;TAS

GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA

GO:0043531 "ADP binding" evidence=IEA

GO:0009626 "plant-type hypersensitive response" evidence=IMP

GO:0016045 "detection of bacterium" evidence=RCA;IMP

GO:0005515 "protein binding" evidence=IPI

GO:0005886 "plasma membrane" evidence=IDA

GO:0042742 "defense response to bacterium" evidence=RCA;IMP

GO:0000165 "MAPK cascade" evidence=RCA

GO:0006612 "protein targeting to membrane" evidence=RCA

GO:0009595 "detection of biotic stimulus" evidence=RCA

GO:0009617 "response to bacterium" evidence=RCA

GO:0009697 "salicylic acid biosynthetic process" evidence=RCA

GO:0009862 "systemic acquired resistance, salicylic acid mediated signaling pathway" evidence=RCA

GO:0009863 "salicylic acid mediated signaling pathway" evidence=RCA

GO:0009867 "jasmonic acid mediated signaling pathway" evidence=RCA

GO:0009963 "positive regulation of flavonoid biosynthetic process" evidence=RCA

GO:0010200 "response to chitin" evidence=RCA

GO:0010310 "regulation of hydrogen peroxide metabolic process" evidence=RCA

GO:0010363 "regulation of plant-type hypersensitive response" evidence=RCA

GO:0031347 "regulation of defense response" evidence=RCA

GO:0031348 "negative regulation of defense response" evidence=RCA

GO:0043069 "negative regulation of programmed cell death" evidence=RCA

GO:0043900 "regulation of multi-organism process" evidence=RCA

GO:0045087 "innate immune response" evidence=RCA

GO:0050776 "regulation of immune response" evidence=RCA

GO:0050832 "defense response to fungus" evidence=RCA

GO:0051707 "response to other organism" evidence=RCA

TAIR|locus:2036214 AT1G15890 [Arabidopsis thaliana (taxid:3702)]

 Score = 247 (92.0 bits), Expect = 3.6e-22, Sum P(3) = 3.6e-22
 Identities = 53/172 (30%), Positives = 89/172 (51%)

Query:     3 WECYQKMTVCVCSLNMHQSLKEVGQKIAMKCKGLPLAAKTLGGLLRGKDDPKDWENV--- 59
             WE +QK  V    L  H+ +  + +K+A KC GLPLA   +G  +  ++  ++W++V   
Sbjct:   316 WELFQKK-VGPIPLQSHEDIPTLARKVAEKCCGLPLALSVIGKAMASRETVQEWQHVIHV 374

Query:    60 LKTEVWDLADDKCDIIPALRVSYHFLPPQ-LKQCFAYCSLFPKDHEFQKEQIILLWAAEG 118
             L +   +    +  I+P L+ SY  L  + +K CF YCSLFP+D+E +KE++I  W  EG
Sbjct:   375 LNSSSHEFPSMEEKILPVLKFSYDDLKDEKVKLCFLYCSLFPEDYEVRKEELIEYWMCEG 434

Query:   119 FLHQENSKRKMEDLGREFVEELHSRSLFHQSTYDASRFVMHDLINDLTRWAA 170
             F+     +    + G + +  L    L        ++  MHD+I ++  W A
Sbjct:   435 FIDGNEDEDGANNKGHDIIGSLVRAHLLMDGEL-TTKVKMHDVIREMALWIA 485

GO:0005634 "nucleus" evidence=ISM

GO:0006952 "defense response" evidence=IEA;ISS

GO:0043531 "ADP binding" evidence=IEA

TAIR|locus:2166320 AT5G63020 [Arabidopsis thaliana (taxid:3702)]

 Score = 248 (92.4 bits), Expect = 5.4e-22, Sum P(3) = 5.4e-22
 Identities = 54/174 (31%), Positives = 91/174 (52%)

Query:     3 WECYQKMTVCVCSLNMHQSLKEVGQKIAMKCKGLPLAAKTLGGLLRGKDDPKDWEN---V 59
             W+ + K  V   +L  H  +  V + +A KC+GLPLA   +G  +  K   ++W +   V
Sbjct:   317 WDLFTKK-VGEITLGSHPEIPTVARTVAKKCRGLPLALNVIGETMAYKRTVQEWRSAIDV 375

Query:    60 LKTEVWDLADDKCDIIPALRVSYHFLPP-QLKQCFAYCSLFPKDHEFQKEQIILLWAAEG 118
             L +   + +  + +I+P L+ SY  L   QLK CF YC+LFP+DH  +K  ++  W  EG
Sbjct:   376 LTSSAAEFSGMEDEILPILKYSYDNLKSEQLKLCFQYCALFPEDHNIEKNDLVDYWIGEG 435

Query:   119 FLHQENSKRKMEDLGREFVEELHSRSLFHQSTYDASRFVMHDLINDLTRWAAGE 172
             F+  + +K K E+ G E +  L    L  +   +  +  MHD++ ++  W A +
Sbjct:   436 FI--DRNKGKAENQGYEIIGILVRSCLLMEENQETVK--MHDVVREMALWIASD 485

GO:0005634 "nucleus" evidence=ISM

GO:0006952 "defense response" evidence=IEA;ISS

GO:0043531 "ADP binding" evidence=IEA

TAIR|locus:2136447 AT4G27190 [Arabidopsis thaliana (taxid:3702)]

 Score = 218 (81.8 bits), Expect = 6.8e-22, Sum P(3) = 6.8e-22
 Identities = 54/171 (31%), Positives = 88/171 (51%)

Query:     3 WECYQKMTVCVCSLNMHQSLKEVGQKIAMKCKGLPLAAKTLGGLLRGKDDPKDWENVL-- 60
             WE + K    V   + H  ++++ + ++ +C GLPLA  T+G  +RGK + K W +VL  
Sbjct:   308 WELFCKNAGDVVRSD-H--VRKIAKAVSQECGGLPLAIITVGTAMRGKKNVKLWNHVLSK 364

Query:    61 --KTEVWDLADDKCDIIPALRVSYHFLPPQLKQCFAYCSLFPKDHEFQKEQIILLWAAEG 118
               K+  W  + ++  I   L++SY FL  + K CF  C+LFP+D+  +  +++  W AEG
Sbjct:   365 LSKSVPWIKSIEE-KIFQPLKLSYDFLEDKAKFCFLLCALFPEDYSIEVTEVVRYWMAEG 423

Query:   119 FLHQENSKRKMEDLGREFVEELHSRSLFHQSTYDASRFV-MHDLINDLTRW 168
             F+ +  S+    + G   VE L    L      D    V MHD++ D   W
Sbjct:   424 FMEELGSQEDSMNEGITTVESLKDYCLLEDG--DRRDTVKMHDVVRDFAIW 472

GO:0000166 "nucleotide binding" evidence=IEA

GO:0005739 "mitochondrion" evidence=ISM

GO:0006952 "defense response" evidence=IEA;ISS

GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA

GO:0043531 "ADP binding" evidence=IEA

TAIR|locus:2132741 AT4G10780 [Arabidopsis thaliana (taxid:3702)]

 Score = 258 (95.9 bits), Expect = 2.3e-21, Sum P(2) = 2.3e-21
 Identities = 84/323 (26%), Positives = 146/323 (45%)

Query:     3 WECYQKMTVCVCSLNMHQSLKEVGQKIAMKCKGLPLAAKTLGGLLRGKDDPKDWEN---V 59
             WE +Q+  V   SL  H  + E+ +K+A KC+GLPLA   +G  + GK   ++W +   V
Sbjct:   316 WELFQEK-VGQISLGSHPDILELAKKVAGKCRGLPLALNVIGETMAGKRAVQEWHHAVDV 374

Query:    60 LKTEVWDLADDKCDIIPALRVSYHFLPPQ-LKQCFAYCSLFPKDHEFQKEQIILLWAAEG 118
             L +   + +     I+  L+ SY  L  + ++ CF YC+L+P+D+  +K ++I  W  EG
Sbjct:   375 LTSYAAEFSGMDDHILLILKYSYDNLNDKHVRSCFQYCALYPEDYSIKKYRLIDYWICEG 434

Query:   119 FLHQENSKRKMEDLGREFVEELHSRSLFHQSTYDASRFVMHDLINDLTRWAAGETCFRME 178
             F+     K +  + G E +  L    L  +   +     MHD++ ++  W   +     E
Sbjct:   435 FIDGNIGKERAVNQGYEILGTLVRACLLSEEGKNKLEVKMHDVVREMALWTLSDLGKNKE 494

Query:   179 DT-PEGEXXXXXXXXXXXXXXXXXFSLRGYNIFELPKAIE--NLKHLRFLDLSTTKIEIL 235
                 +                    SL    I E+  + E   L  L FL  + + + I 
Sbjct:   495 RCIVQAGSGLRKVPKVEDWGAVRRLSLMNNGIEEISGSPECPELTTL-FLQENKSLVHIS 553

Query:   236 RESINTLYNLHTLLLEDCRRLKKLCKDMGNLTKLHHLN--NSNVGSLEEMLM-LKSLVHL 292
              E    +  L  L L +  +L  L + +  L  L +L+  ++N+  L   L  LK+L+HL
Sbjct:   554 GEFFRHMRKLVVLDLSENHQLDGLPEQISELVALRYLDLSHTNIEGLPACLQDLKTLIHL 613

Query:   293 QGTLE-ISRLENVKGVGDASEVQ 314
                LE + RL ++ G+   S ++
Sbjct:   614 N--LECMRRLGSIAGISKLSSLR 634

GO:0000166 "nucleotide binding" evidence=IEA

GO:0006952 "defense response" evidence=IEA;ISS

GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA

GO:0043531 "ADP binding" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: GSVIVG00031014001 SubName- Full=Chromosome undetermined scaffold_53, whole genome shotgun sequence; (1121 aa) (Vitis vinifera)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	763
pfam00931	285	pfam00931, NB-ARC, NB-ARC domain	1e-30
PRK15386	426	PRK15386, PRK15386, type III secretion protein Gog	2e-07
PLN03210	1153	PLN03210, PLN03210, Resistant to P	7e-07
PLN03210	1153	PLN03210, PLN03210, Resistant to P	7e-05

>gnl|CDD|216202 pfam00931, NB-ARC, NB-ARC domain

 Score =  121 bits (306), Expect = 1e-30
 Identities = 50/112 (44%), Positives = 69/112 (61%), Gaps = 2/112 (1%)

Query: 15  SLNMHQSLKEVGQKIAMKCKGLPLAAKTLGGLLRGKDDPKDWENVLKTEVWDLADDKCD- 73
            L     L+EV ++I  KCKGLPLA K LGGLL  K   ++WE+VL+    +LA      
Sbjct: 173 ELPPCPELEEVAKEIVEKCKGLPLALKVLGGLLAFKSTVQEWEHVLEQLNNELAGRDGLN 232

Query: 74  -IIPALRVSYHFLPPQLKQCFAYCSLFPKDHEFQKEQIILLWAAEGFLHQEN 124
            ++  L +SY  LP  LK+CF Y +LFP+D+  +KEQ+I LW AEGF+   +
Sbjct: 233 EVLSILSLSYDNLPMHLKRCFLYLALFPEDYNIRKEQLIKLWIAEGFVIPSD 284

Length = 285

>gnl|CDD|237954 PRK15386, PRK15386, type III secretion protein GogB; Provisional

 Score = 53.3 bits (128), Expect = 2e-07
 Identities = 54/207 (26%), Positives = 82/207 (39%), Gaps = 42/207 (20%)

Query: 531 RSE-TRLPQDIRSLNRLQISRC-----PQLISLLRTVKIEDCNALESLPEAWMHNSNSSL 584
           RSE T   ++ R+  RL I  C     P L + L  + IE+CN L +LP +        L
Sbjct: 41  RSEITPQIEEARASGRLYIKDCDIESLPVLPNELTEITIENCNNLTTLPGSI----PEGL 96

Query: 585 ESLKIRSCNSLVSFPDFALPSQLRTVTIKGCDALESLPEAWMQNSSTSLESLAIDSCDSL 644
           E L +  C  +       LP  +R++ IK   A +S     ++N    L SL+I+S +  
Sbjct: 97  EKLTVCHCPEISG-----LPESVRSLEIK-GSATDS-----IKNVPNGLTSLSINSYNP- 144

Query: 645 TYIARIQ--LPPSLKRLIIFRCDNLRFNSLRKLKISGGCPDLVSSPRFPASLTELKISDM 702
              ARI   + PSLK L +  C N                 ++   + P SL  + +   
Sbjct: 145 ENQARIDNLISPSLKTLSLTGCSN-----------------IILPEKLPESLQSITLHIE 187

Query: 703 PSLERLSSIGENLTSLKFLDLDNCPKL 729
                 +   E       +DL N   L
Sbjct: 188 -QKTTWNISFEGFPDGLDIDLQNSVLL 213

Length = 426

>gnl|CDD|215633 PLN03210, PLN03210, Resistant to P

 Score = 52.6 bits (126), Expect = 7e-07
 Identities = 54/189 (28%), Positives = 85/189 (44%), Gaps = 26/189 (13%)

Query: 558 LRTVKIEDCNALESLPEAWMHNSNSSLESLKIRSCNSLVSFP-DFALPSQLRTVTIKGCD 616
           LR + +     L+ +P+  M    ++LE+LK+  C+SLV  P      ++L  + +  C+
Sbjct: 636 LRNIDLRGSKNLKEIPDLSM---ATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCE 692

Query: 617 ALESLPEAWMQNSSTSLESLAIDSCDSLTYIARIQLPPSLKRLIIFRC------DNLRFN 670
            LE LP      +  SL  L +  C  L     I    ++  L +          NLR  
Sbjct: 693 NLEILPTGI---NLKSLYRLNLSGCSRLKSFPDI--STNISWLDLDETAIEEFPSNLRLE 747

Query: 671 SLRKLKI----SGGCPDLVSSPRFP------ASLTELKISDMPSLERLSSIGENLTSLKF 720
           +L +L +    S    + V  P  P       SLT L +SD+PSL  L S  +NL  L+ 
Sbjct: 748 NLDELILCEMKSEKLWERVQ-PLTPLMTMLSPSLTRLFLSDIPSLVELPSSIQNLHKLEH 806

Query: 721 LDLDNCPKL 729
           L+++NC  L
Sbjct: 807 LEIENCINL 815

syringae 6; Provisional. Length = 1153

>gnl|CDD|215633 PLN03210, PLN03210, Resistant to P

 Score = 46.0 bits (109), Expect = 7e-05
 Identities = 62/194 (31%), Positives = 86/194 (44%), Gaps = 29/194 (14%)

Query: 428 SLETLFFVDICSKLQGTLPERLLLLEKLNIF---RCEQL--LVTLQCLPALRELEIDGCK 482
           +LETL   D CS L   LP  +  L KL      RCE L  L T   L +L  L + GC 
Sbjct: 658 NLETLKLSD-CSSLV-ELPSSIQYLNKLEDLDMSRCENLEILPTGINLKSLYRLNLSGCS 715

Query: 483 GV--VLSSPTDLSSLKLVHSRDMAKEVFEQGLP--KLERLEIQHVREQTYLWRSETRLPQ 538
            +       T++S L L  +   A E F   L    L+ L +  ++ +    R +   P 
Sbjct: 716 RLKSFPDISTNISWLDLDET---AIEEFPSNLRLENLDELILCEMKSEKLWERVQPLTPL 772

Query: 539 DI---RSLNRLQISRCPQLISL---------LRTVKIEDCNALESLPEAWMHNSNSSLES 586
                 SL RL +S  P L+ L         L  ++IE+C  LE+LP      +  SLES
Sbjct: 773 MTMLSPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTGI---NLESLES 829

Query: 587 LKIRSCNSLVSFPD 600
           L +  C+ L +FPD
Sbjct: 830 LDLSGCSRLRTFPD 843

syringae 6; Provisional. Length = 1153

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	763
PLN03210	1153	Resistant to P. syringae 6; Provisional	100.0
KOG4658	889	consensus Apoptotic ATPase [Signal transduction me	100.0
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	100.0
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	100.0
PLN03210	1153	Resistant to P. syringae 6; Provisional	99.93
KOG0472	565	consensus Leucine-rich repeat protein [Function un	99.91
KOG4194	873	consensus Membrane glycoprotein LIG-1 [Signal tran	99.9
KOG0618	1081	consensus Serine/threonine phosphatase 2C containi	99.89
KOG4194	873	consensus Membrane glycoprotein LIG-1 [Signal tran	99.88
KOG0472	565	consensus Leucine-rich repeat protein [Function un	99.88
KOG0444	1255	consensus Cytoskeletal regulator Flightless-I (con	99.87
KOG0618	1081	consensus Serine/threonine phosphatase 2C containi	99.83
KOG0444	1255	consensus Cytoskeletal regulator Flightless-I (con	99.8
PF00931	287	NB-ARC: NB-ARC domain; InterPro: IPR002182 This is	99.74
KOG4237	498	consensus Extracellular matrix protein slit, conta	99.63
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	99.63
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	99.62
KOG4237	498	consensus Extracellular matrix protein slit, conta	99.39
KOG0617	264	consensus Ras suppressor protein (contains leucine	99.38
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	99.35
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	99.32
KOG0617	264	consensus Ras suppressor protein (contains leucine	99.24
KOG4658	889	consensus Apoptotic ATPase [Signal transduction me	99.23
KOG4341	483	consensus F-box protein containing LRR [General fu	98.88
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	98.86
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	98.78
KOG4341	483	consensus F-box protein containing LRR [General fu	98.76
PRK15386	426	type III secretion protein GogB; Provisional	98.73
PRK15386	426	type III secretion protein GogB; Provisional	98.64
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	98.61
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	98.61
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	98.58
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	98.56
KOG1259	490	consensus Nischarin, modulator of integrin alpha5	98.52
KOG0532	722	consensus Leucine-rich repeat (LRR) protein, conta	98.5
KOG3207	505	consensus Beta-tubulin folding cofactor E [Posttra	98.47
KOG3207	505	consensus Beta-tubulin folding cofactor E [Posttra	98.44
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	98.43
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	98.36
KOG1909	382	consensus Ran GTPase-activating protein [RNA proce	98.32
PLN03150	623	hypothetical protein; Provisional	98.23
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	98.22
KOG0532	722	consensus Leucine-rich repeat (LRR) protein, conta	98.15
PLN03150	623	hypothetical protein; Provisional	98.13
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	98.08
KOG2120	419	consensus SCF ubiquitin ligase, Skp2 component [Po	98.07
KOG1259	490	consensus Nischarin, modulator of integrin alpha5	98.06
KOG2120	419	consensus SCF ubiquitin ligase, Skp2 component [Po	98.0
KOG0531	414	consensus Protein phosphatase 1, regulatory subuni	97.88
KOG0531	414	consensus Protein phosphatase 1, regulatory subuni	97.8
KOG4579	177	consensus Leucine-rich repeat (LRR) protein associ	97.73
KOG1859	1096	consensus Leucine-rich repeat proteins [General fu	97.52
COG5238	388	RNA1 Ran GTPase-activating protein (RanGAP) involv	97.29
KOG2982	418	consensus Uncharacterized conserved protein [Funct	97.27
KOG4579	177	consensus Leucine-rich repeat (LRR) protein associ	97.27
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	97.17
KOG1909	382	consensus Ran GTPase-activating protein [RNA proce	97.11
KOG1644	233	consensus U2-associated snRNP A' protein [RNA proc	96.97
KOG1947	482	consensus Leucine rich repeat proteins, some prote	96.96
KOG1947	482	consensus Leucine rich repeat proteins, some prote	96.9
KOG1859	1096	consensus Leucine-rich repeat proteins [General fu	96.9
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	96.67
KOG1644	233	consensus U2-associated snRNP A' protein [RNA proc	96.58
PF00560	22	LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le	96.56
KOG2982	418	consensus Uncharacterized conserved protein [Funct	96.48
KOG0473	326	consensus Leucine-rich repeat protein [Function un	95.85
PF00560	22	LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le	95.85
KOG2739	260	consensus Leucine-rich acidic nuclear protein [Cel	95.82
KOG2739	260	consensus Leucine-rich acidic nuclear protein [Cel	95.79
KOG2123	388	consensus Uncharacterized conserved protein [Funct	95.74
KOG2123	388	consensus Uncharacterized conserved protein [Funct	95.03
PF13504	17	LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OO	94.58
PF13504	17	LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OO	93.72
smart00369	26	LRR_TYP Leucine-rich repeats, typical (most popula	91.5
smart00370	26	LRR Leucine-rich repeats, outliers.	91.5
PRK04841	903	transcriptional regulator MalT; Provisional	90.61
PF13306	129	LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_	90.18
KOG3864	221	consensus Uncharacterized conserved protein [Funct	90.16
PF13306	129	LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_	89.65
KOG3864	221	consensus Uncharacterized conserved protein [Funct	89.26
COG5238	388	RNA1 Ran GTPase-activating protein (RanGAP) involv	88.0
KOG0473	326	consensus Leucine-rich repeat protein [Function un	86.89
smart00369	26	LRR_TYP Leucine-rich repeats, typical (most popula	85.51
smart00370	26	LRR Leucine-rich repeats, outliers.	85.51

>PLN03210 Resistant to P

Probab=100.00  E-value=8.2e-50  Score=475.95  Aligned_cols=552  Identities=22%  Similarity=0.296  Sum_probs=332.6

Q ss_pred             ChHHHHhhhhcCCCCCCCcchHHHHHHHHHHHcCCChHHHHHHHHHhcCCCChHHHHHHHhhhcccccCCccChHHHHHH
Q 039689            1 MHWECYQKMTVCVCSLNMHQSLKEVGQKIAMKCKGLPLAAKTLGGLLRGKDDPKDWENVLKTEVWDLADDKCDIIPALRV   80 (763)
Q Consensus         1 ~~~~lf~~~af~~~~~~~~~~~~~~~~~i~~~c~GlPlal~~~g~~L~~~~~~~~W~~~l~~~~~~~~~~~~~i~~~l~~   80 (763)
                      +||+||+++||+..  .+++++++++++||++|+|+||||+++|+.|+++ +.++|+++++++.+..   +.+|.++|++
T Consensus       355 ea~~LF~~~Af~~~--~~~~~~~~l~~~iv~~c~GLPLAl~vlgs~L~~k-~~~~W~~~l~~L~~~~---~~~I~~~L~~  428 (1153)
T PLN03210        355 LALEMFCRSAFKKN--SPPDGFMELASEVALRAGNLPLGLNVLGSYLRGR-DKEDWMDMLPRLRNGL---DGKIEKTLRV  428 (1153)
T ss_pred             HHHHHHHHHhcCCC--CCcHHHHHHHHHHHHHhCCCcHHHHHHHHHHcCC-CHHHHHHHHHHHHhCc---cHHHHHHHHH
Confidence            59999999999764  3567899999999999999999999999999998 6899999999987543   3479999999


Q ss_pred             HHhcCCH-hHHHHhhhhcccCCCCccCHHHHHHHHHHcCCcccCCCcccHHHHHHHHHHHHHHCCCcccccCCCCcceec
Q 039689           81 SYHFLPP-QLKQCFAYCSLFPKDHEFQKEQIILLWAAEGFLHQENSKRKMEDLGREFVEELHSRSLFHQSTYDASRFVMH  159 (763)
Q Consensus        81 Sy~~L~~-~~k~~fl~~~~fp~~~~i~~~~li~~w~~~g~~~~~~~~~~~~~~~~~~~~~L~~~~ll~~~~~~~~~~~mh  159 (763)
                      |||+|++ +.|.||+||||||.+..+  + .+..|.+.+.+..           ...++.|+++||++..   .++++||
T Consensus       429 SYd~L~~~~~k~~Fl~ia~ff~~~~~--~-~v~~~l~~~~~~~-----------~~~l~~L~~ksLi~~~---~~~~~MH  491 (1153)
T PLN03210        429 SYDGLNNKKDKAIFRHIACLFNGEKV--N-DIKLLLANSDLDV-----------NIGLKNLVDKSLIHVR---EDIVEMH  491 (1153)
T ss_pred             hhhccCccchhhhhheehhhcCCCCH--H-HHHHHHHhcCCCc-----------hhChHHHHhcCCEEEc---CCeEEhh
Confidence            9999987 599999999999998654  3 3556666654432           2238899999999875   3569999


Q ss_pred             hhHHHHHHHHhcCceEEecCCC-----CCcchhhhhhccCCCCcccEEEecCCCCCc--c-CcccCCCCcccEEecCCCC
Q 039689          160 DLINDLTRWAAGETCFRMEDTP-----EGERRQNVLQRLLNLPRLRVFSLRGYNIFE--L-PKAIENLKHLRFLDLSTTK  231 (763)
Q Consensus       160 dli~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~~--l-p~~~~~l~~L~~L~L~~~~  231 (763)
                      |++|+||++++.++.. ..+..     ..++.+ ++..-.+....+.+.+.-..+..  + +..|.+|.+|++|.+..+.
T Consensus       492 dLl~~~~r~i~~~~~~-~~~~r~~l~~~~di~~-vl~~~~g~~~v~~i~l~~~~~~~~~i~~~aF~~m~~L~~L~~~~~~  569 (1153)
T PLN03210        492 SLLQEMGKEIVRAQSN-EPGEREFLVDAKDICD-VLEDNTGTKKVLGITLDIDEIDELHIHENAFKGMRNLLFLKFYTKK  569 (1153)
T ss_pred             hHHHHHHHHHHHhhcC-CCCcceeEeCHHHHHH-HHHhCcccceeeEEEeccCccceeeecHHHHhcCccccEEEEeccc
Confidence            9999999999977641 11110     111111 22222334455555554444433  2 3678888999999886653


Q ss_pred             c------h-hcchhhhhcc-cccEEeeccccccccccccccCcccccccccCCcccccccccCCCccCCCceeeecCccc
Q 039689          232 I------E-ILRESINTLY-NLHTLLLEDCRRLKKLCKDMGNLTKLHHLNNSNVGSLEEMLMLKSLVHLQGTLEISRLEN  303 (763)
Q Consensus       232 i------~-~lp~~~~~L~-~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~l~~l~~L~~L~~~L~~~~~~~  303 (763)
                      .      . .+|..+..++ +|+.|++.+ +.+..+|..+ ...+|++|++.++. +..++.                  
T Consensus       570 ~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~-~~l~~lP~~f-~~~~L~~L~L~~s~-l~~L~~------------------  628 (1153)
T PLN03210        570 WDQKKEVRWHLPEGFDYLPPKLRLLRWDK-YPLRCMPSNF-RPENLVKLQMQGSK-LEKLWD------------------  628 (1153)
T ss_pred             ccccccceeecCcchhhcCcccEEEEecC-CCCCCCCCcC-CccCCcEEECcCcc-cccccc------------------
Confidence            2      1 4677776664 588888888 5778888776 46788888887765 332221                  


Q ss_pred             ccCcccchhhhhcCcccccceEEeeccCCCCCCccHHHHhhcCCCCCCceEEEeeeCCCCCCCccCCCCCCCceEEEEec
Q 039689          304 VKGVGDASEVQLNSKVNLKALYLQWGVRDAVEPKTETQVIDMLKPHQKLELTITGYGGTKFPIWLGDSLFSKLMLLKFDN  383 (763)
Q Consensus       304 ~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~l~~l~~L~L~~~~~~~~~~p~~~~~~~~~~L~~L~l~~  383 (763)
                                                                                     .+..  +++|+.|++++
T Consensus       629 ---------------------------------------------------------------~~~~--l~~Lk~L~Ls~  643 (1153)
T PLN03210        629 ---------------------------------------------------------------GVHS--LTGLRNIDLRG  643 (1153)
T ss_pred             ---------------------------------------------------------------cccc--CCCCCEEECCC
Confidence                                                                           1111  45566666666


Q ss_pred             cCCCCCCCCCCCCCCCCcceecccCCceEeCccccCCCcCCCCCCcceeeccccchhhhcCCCCcCCcccEEEEecCcch
Q 039689          384 CGTCTSLPSVGQLPFLKDPVISGMGRVKIVGSEFYGSSCSVSFPSLETLFFVDICSKLQGTLPERLLLLEKLNIFRCEQL  463 (763)
Q Consensus       384 ~~~~~~l~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~f~~L~~L~l~~~~~~l~~~~~~~~~~L~~L~l~~~~~l  463 (763)
                      |..+..+|.++.+++|+.|++++|..+..++..+                             ..+++|+.|++.+|..+
T Consensus       644 ~~~l~~ip~ls~l~~Le~L~L~~c~~L~~lp~si-----------------------------~~L~~L~~L~L~~c~~L  694 (1153)
T PLN03210        644 SKNLKEIPDLSMATNLETLKLSDCSSLVELPSSI-----------------------------QYLNKLEDLDMSRCENL  694 (1153)
T ss_pred             CCCcCcCCccccCCcccEEEecCCCCccccchhh-----------------------------hccCCCCEEeCCCCCCc
Confidence            6555566666666666666666654443322111                             11233333333333322


Q ss_pred             hhcC--CCCCcccEEEEecCCcccccCCCccccceeccccchhhhhhcCCCCCCceEEEeccCCccccccccCcCCc--c
Q 039689          464 LVTL--QCLPALRELEIDGCKGVVLSSPTDLSSLKLVHSRDMAKEVFEQGLPKLERLEIQHVREQTYLWRSETRLPQ--D  539 (763)
Q Consensus       464 ~~~l--~~l~~L~~L~l~~~~~~~~~~~~~L~~L~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~p~--~  539 (763)
                      ....  ..+++|++|++++|.....  ++                   ...++|++|+++++.. +       .+|.  .
T Consensus       695 ~~Lp~~i~l~sL~~L~Lsgc~~L~~--~p-------------------~~~~nL~~L~L~~n~i-~-------~lP~~~~  745 (1153)
T PLN03210        695 EILPTGINLKSLYRLNLSGCSRLKS--FP-------------------DISTNISWLDLDETAI-E-------EFPSNLR  745 (1153)
T ss_pred             CccCCcCCCCCCCEEeCCCCCCccc--cc-------------------cccCCcCeeecCCCcc-c-------ccccccc
Confidence            2110  1355666666666642210  00                   1134566666666542 1       2332  2


Q ss_pred             ccccCceeeccCCchhhhcceeeeccCCCcccccchhhhcCCCCcceEEEecCccccccCC-CCCCCCccEEEEccCCCC
Q 039689          540 IRSLNRLQISRCPQLISLLRTVKIEDCNALESLPEAWMHNSNSSLESLKIRSCNSLVSFPD-FALPSQLRTVTIKGCDAL  618 (763)
Q Consensus       540 l~~L~~L~l~~~~~l~~~L~~L~l~~~~~l~~l~~~~~~~~l~~L~~L~l~~c~~l~~~~~-~~~~~~L~~L~l~~~~~l  618 (763)
                      +++|+.|.+.++..       ..+.  +.+..++.. ....+++|+.|++++|+.+..+|. ++.+++|+.|++++|..+
T Consensus       746 l~~L~~L~l~~~~~-------~~l~--~~~~~l~~~-~~~~~~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L  815 (1153)
T PLN03210        746 LENLDELILCEMKS-------EKLW--ERVQPLTPL-MTMLSPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINL  815 (1153)
T ss_pred             ccccccccccccch-------hhcc--ccccccchh-hhhccccchheeCCCCCCccccChhhhCCCCCCEEECCCCCCc
Confidence            33444444433211       0000  001111111 011134555555555555555543 344555555555555555


Q ss_pred             CCCchhhhcCCCCCcceEeeccCCCccccccccCCCCCcEEEEecCCCCCCCccceEEecCCCCCccccCC---CCCCcC
Q 039689          619 ESLPEAWMQNSSTSLESLAIDSCDSLTYIARIQLPPSLKRLIIFRCDNLRFNSLRKLKISGGCPDLVSSPR---FPASLT  695 (763)
Q Consensus       619 ~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~L~~L~l~~c~~l~~~~L~~L~l~~~~~~l~~~~~---~~~~L~  695 (763)
                      +.+|...   .+++|+.|++++|..++.+|..                  ..+|+.|++++  +.++.+|.   .+++|+
T Consensus       816 ~~LP~~~---~L~sL~~L~Ls~c~~L~~~p~~------------------~~nL~~L~Ls~--n~i~~iP~si~~l~~L~  872 (1153)
T PLN03210        816 ETLPTGI---NLESLESLDLSGCSRLRTFPDI------------------STNISDLNLSR--TGIEEVPWWIEKFSNLS  872 (1153)
T ss_pred             CeeCCCC---CccccCEEECCCCCcccccccc------------------ccccCEeECCC--CCCccChHHHhcCCCCC
Confidence            5555432   3455555555555544443311                  13455666654  45555554   567888


Q ss_pred             eEeeccCCCCccccCCCCCCCCcCceecccCCCCccccCCCccc--------------ccceeeeccChhHHH
Q 039689          696 ELKISDMPSLERLSSIGENLTSLKFLDLDNCPKLKYFSKQGLPK--------------SLLRLIIDECPLIEK  754 (763)
Q Consensus       696 ~L~l~~~~~l~~ip~~~~~l~~L~~L~l~~c~~L~~l~~~~~~~--------------~L~~L~i~~C~~l~~  754 (763)
                      +|++++|++++.+|.....+++|+.+++++|++|+.++....+.              +...+...+|.+|..
T Consensus       873 ~L~L~~C~~L~~l~~~~~~L~~L~~L~l~~C~~L~~~~l~~~~~~~~~~~~n~~~~~p~~~~l~f~nC~~L~~  945 (1153)
T PLN03210        873 FLDMNGCNNLQRVSLNISKLKHLETVDFSDCGALTEASWNGSPSEVAMATDNIHSKLPSTVCINFINCFNLDQ  945 (1153)
T ss_pred             EEECCCCCCcCccCcccccccCCCeeecCCCcccccccCCCCchhhhhhcccccccCCchhccccccccCCCc
Confidence            88888888888888777788888888888888887665433221              223345667776653

syringae 6; Provisional

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]

Probab=100.00  E-value=7e-51  Score=458.09  Aligned_cols=296  Identities=33%  Similarity=0.546  Sum_probs=243.4

Q ss_pred             ChHHHHhhhhcCCCCCCCcchHHHHHHHHHHHcCCChHHHHHHHHHhcCCCChHHHHHHHhhhccccc----CCccChHH
Q 039689            1 MHWECYQKMTVCVCSLNMHQSLKEVGQKIAMKCKGLPLAAKTLGGLLRGKDDPKDWENVLKTEVWDLA----DDKCDIIP   76 (763)
Q Consensus         1 ~~~~lf~~~af~~~~~~~~~~~~~~~~~i~~~c~GlPlal~~~g~~L~~~~~~~~W~~~l~~~~~~~~----~~~~~i~~   76 (763)
                      +||+||++.||.... ..++.+.++|++||++|+|+|||++|||+.|++|++.++|+++.+.+.+...    .+.+.|++
T Consensus       321 eaW~LF~~~v~~~~~-~~~~~i~~lak~v~~kC~GLPLAl~viG~~ma~K~t~~eW~~~~~~l~s~~~~~~~~~~~~i~~  399 (889)
T KOG4658|consen  321 EAWDLFQKKVGPNTL-GSHPDIEELAKEVAEKCGGLPLALNVLGGLLACKKTVQEWRRALNVLKSSLAADFSGMEESILP  399 (889)
T ss_pred             ccHHHHHHhhccccc-cccccHHHHHHHHHHHhCChHHHHHHHHHHhcCCCcHHHHHHHHccccccccCCCCchhhhhHH
Confidence            699999999987643 3345599999999999999999999999999999888999999998766522    23568999


Q ss_pred             HHHHHHhcCCHhHHHHhhhhcccCCCCccCHHHHHHHHHHcCCcccCCCcccHHHHHHHHHHHHHHCCCccccc--CCCC
Q 039689           77 ALRVSYHFLPPQLKQCFAYCSLFPKDHEFQKEQIILLWAAEGFLHQENSKRKMEDLGREFVEELHSRSLFHQST--YDAS  154 (763)
Q Consensus        77 ~l~~Sy~~L~~~~k~~fl~~~~fp~~~~i~~~~li~~w~~~g~~~~~~~~~~~~~~~~~~~~~L~~~~ll~~~~--~~~~  154 (763)
                      +|++|||+||++.|.||+|||+|||||+|+++.|+.||+|+||+.+....+.++|+|+.|+++|++++|+....  +...
T Consensus       400 iLklSyd~L~~~lK~CFLycalFPED~~I~~e~Li~yWiaEGfi~~~~~~~~~~d~G~~~i~~LV~~~Ll~~~~~~~~~~  479 (889)
T KOG4658|consen  400 ILKLSYDNLPEELKSCFLYCALFPEDYEIKKEKLIEYWIAEGFIDPLDGGETAEDVGYDYIEELVRASLLIEERDEGRKE  479 (889)
T ss_pred             hhhccHhhhhHHHHHHHHhhccCCcccccchHHHHHHHHhccCcCccccccchhcchHHHHHHHHHHHHHhhccccccee
Confidence            99999999999999999999999999999999999999999999997778999999999999999999999875  3457


Q ss_pred             cceechhHHHHHHHHhc-----CceEEecCC----------CCCcchhh--------hhhccCCCCcccEEEecCCC--C
Q 039689          155 RFVMHDLINDLTRWAAG-----ETCFRMEDT----------PEGERRQN--------VLQRLLNLPRLRVFSLRGYN--I  209 (763)
Q Consensus       155 ~~~mhdli~~~~~~~~~-----~~~~~~~~~----------~~~~~~~~--------~~~~~~~l~~Lr~L~L~~~~--i  209 (763)
                      +|+|||+||+||.|+++     .+...+.+.          .....|+.        ....-...+.|++|-+.+|.  +
T Consensus       480 ~~kmHDvvRe~al~ias~~~~~~e~~iv~~~~~~~~~~~~~~~~~~rr~s~~~~~~~~~~~~~~~~~L~tLll~~n~~~l  559 (889)
T KOG4658|consen  480 TVKMHDVVREMALWIASDFGKQEENQIVSDGVGLSEIPQVKSWNSVRRMSLMNNKIEHIAGSSENPKLRTLLLQRNSDWL  559 (889)
T ss_pred             EEEeeHHHHHHHHHHhccccccccceEEECCcCccccccccchhheeEEEEeccchhhccCCCCCCccceEEEeecchhh
Confidence            89999999999999999     343333221          11122222        11111455689999999986  6


Q ss_pred             CccC-cccCCCCcccEEecCCC-CchhcchhhhhcccccEEeeccccccccccccccCcccccccccCCcccccccccCC
Q 039689          210 FELP-KAIENLKHLRFLDLSTT-KIEILRESINTLYNLHTLLLEDCRRLKKLCKDMGNLTKLHHLNNSNVGSLEEMLMLK  287 (763)
Q Consensus       210 ~~lp-~~~~~l~~L~~L~L~~~-~i~~lp~~~~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~l~~l~  287 (763)
                      ..++ ..|..|+.|++|||++| .+..+|.+|+.|.+||+|++++ +.+..+|.++++|++|.+|++..+..+..++...
T Consensus       560 ~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~-t~I~~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~  638 (889)
T KOG4658|consen  560 LEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSD-TGISHLPSGLGNLKKLIYLNLEVTGRLESIPGIL  638 (889)
T ss_pred             hhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccC-CCccccchHHHHHHhhheeccccccccccccchh
Confidence            6665 45888999999999987 5789999999999999999999 7899999999999999999999887666665533


Q ss_pred             C-ccCCCceeeec
Q 039689          288 S-LVHLQGTLEIS  299 (763)
Q Consensus       288 ~-L~~L~~~L~~~  299 (763)
                      . |.+|| .+.+.
T Consensus       639 ~~L~~Lr-~L~l~  650 (889)
T KOG4658|consen  639 LELQSLR-VLRLP  650 (889)
T ss_pred             hhccccc-EEEee
Confidence            3 56665 44443

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=100.00  E-value=4.1e-35  Score=351.25  Aligned_cols=500  Identities=17%  Similarity=0.165  Sum_probs=293.1

Q ss_pred             hhhccCCCCcccEEEecCCCCC-ccCccc-CCCCcccEEecCCCCch-hcchhhhhcccccEEeeccccccccccccccC
Q 039689          189 VLQRLLNLPRLRVFSLRGYNIF-ELPKAI-ENLKHLRFLDLSTTKIE-ILRESINTLYNLHTLLLEDCRRLKKLCKDMGN  265 (763)
Q Consensus       189 ~~~~~~~l~~Lr~L~L~~~~i~-~lp~~~-~~l~~L~~L~L~~~~i~-~lp~~~~~L~~L~~L~L~~~~~l~~lp~~i~~  265 (763)
                      .+..+..+++|++|+|++|++. .+|..+ ..+++|++|+|++|.++ .+|.  +.+++|++|+|++|.....+|..+++
T Consensus        85 ~~~~~~~l~~L~~L~Ls~n~~~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~--~~l~~L~~L~Ls~n~~~~~~p~~~~~  162 (968)
T PLN00113         85 ISSAIFRLPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNNNFTGSIPR--GSIPNLETLDLSNNMLSGEIPNDIGS  162 (968)
T ss_pred             CChHHhCCCCCCEEECCCCccCCcCChHHhccCCCCCEEECcCCccccccCc--cccCCCCEEECcCCcccccCChHHhc
Confidence            4556677888888888888875 567554 47888888888888776 3443  56778888888886555567777888


Q ss_pred             cccccccccCCccccccccc-CCCccCCCceeeecCcccccCcccchhhhhcCcccccceEEeeccCCCCCCccHHHHhh
Q 039689          266 LTKLHHLNNSNVGSLEEMLM-LKSLVHLQGTLEISRLENVKGVGDASEVQLNSKVNLKALYLQWGVRDAVEPKTETQVID  344 (763)
Q Consensus       266 L~~L~~L~l~~~~~l~~l~~-l~~L~~L~~~L~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~  344 (763)
                      +++|++|++++|.....+|. +.++++|+ .|++.+..    .....+..+.++++|+.|++.+|......       ..
T Consensus       163 l~~L~~L~L~~n~l~~~~p~~~~~l~~L~-~L~L~~n~----l~~~~p~~l~~l~~L~~L~L~~n~l~~~~-------p~  230 (968)
T PLN00113        163 FSSLKVLDLGGNVLVGKIPNSLTNLTSLE-FLTLASNQ----LVGQIPRELGQMKSLKWIYLGYNNLSGEI-------PY  230 (968)
T ss_pred             CCCCCEEECccCcccccCChhhhhCcCCC-eeeccCCC----CcCcCChHHcCcCCccEEECcCCccCCcC-------Ch
Confidence            88888888888763334443 56666666 66665432    22233445667777777777666433221       11


Q ss_pred             cCCCCCCc-eEEEeeeCCC-CCCCccCCCCCCCceEEEEeccCCCCCCC-CCCCCCCCCcceecccCCceEeCccccCCC
Q 039689          345 MLKPHQKL-ELTITGYGGT-KFPIWLGDSLFSKLMLLKFDNCGTCTSLP-SVGQLPFLKDPVISGMGRVKIVGSEFYGSS  421 (763)
Q Consensus       345 ~l~~l~~L-~L~~~~~~~~-~~p~~~~~~~~~~L~~L~l~~~~~~~~l~-~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~  421 (763)
                      .+..++.| .|++.++... .+|..+..  +++|+.|++++|...+.+| .+..+++|+.|++++|.....++..+    
T Consensus       231 ~l~~l~~L~~L~L~~n~l~~~~p~~l~~--l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~----  304 (968)
T PLN00113        231 EIGGLTSLNHLDLVYNNLTGPIPSSLGN--LKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPELV----  304 (968)
T ss_pred             hHhcCCCCCEEECcCceeccccChhHhC--CCCCCEEECcCCeeeccCchhHhhccCcCEEECcCCeeccCCChhH----
Confidence            22334444 4445444332 34555554  5667777776666555555 56666667777766654333322222    


Q ss_pred             cCCCCCCcceeeccccchhhhcCCCC---cCCcccEEEEecCcc---hhhcCCCCCcccEEEEecCCcccc-----cCCC
Q 039689          422 CSVSFPSLETLFFVDICSKLQGTLPE---RLLLLEKLNIFRCEQ---LLVTLQCLPALRELEIDGCKGVVL-----SSPT  490 (763)
Q Consensus       422 ~~~~f~~L~~L~l~~~~~~l~~~~~~---~~~~L~~L~l~~~~~---l~~~l~~l~~L~~L~l~~~~~~~~-----~~~~  490 (763)
                        ..+++|+.|++.+  +.+.+..|.   .+++|+.|++.+|..   ++..+..+++|+.|++++|.....     ....
T Consensus       305 --~~l~~L~~L~l~~--n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~  380 (968)
T PLN00113        305 --IQLQNLEILHLFS--NNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGLCSSG  380 (968)
T ss_pred             --cCCCCCcEEECCC--CccCCcCChhHhcCCCCCEEECcCCCCcCcCChHHhCCCCCcEEECCCCeeEeeCChhHhCcC
Confidence              2256666666665  333333332   455666666666642   233445566666676666653321     1122


Q ss_pred             ccccceeccccch-hhhhhcCCCCCCceEEEeccCCccccccccCcCCccccccCceeeccCCchhhhcceeeeccCCCc
Q 039689          491 DLSSLKLVHSRDM-AKEVFEQGLPKLERLEIQHVREQTYLWRSETRLPQDIRSLNRLQISRCPQLISLLRTVKIEDCNAL  569 (763)
Q Consensus       491 ~L~~L~~~~~~~~-~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~p~~l~~L~~L~l~~~~~l~~~L~~L~l~~~~~l  569 (763)
                      .++.+.+.++... .....+..+++|+.|++++|....       .+|..+..+..            |+.|++++|...
T Consensus       381 ~L~~L~l~~n~l~~~~p~~~~~~~~L~~L~L~~n~l~~-------~~p~~~~~l~~------------L~~L~Ls~N~l~  441 (968)
T PLN00113        381 NLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSG-------ELPSEFTKLPL------------VYFLDISNNNLQ  441 (968)
T ss_pred             CCCEEECcCCEecccCCHHHhCCCCCCEEECcCCEeee-------ECChhHhcCCC------------CCEEECcCCccc
Confidence            3333333332221 111222344555555555554332       22322222111            566666665444


Q ss_pred             ccccchhhhcCCCCcceEEEecCccccccCCCCCCCCccEEEEccCCCCCCCchhhhcCCCCCcceEeeccCCCcccccc
Q 039689          570 ESLPEAWMHNSNSSLESLKIRSCNSLVSFPDFALPSQLRTVTIKGCDALESLPEAWMQNSSTSLESLAIDSCDSLTYIAR  649 (763)
Q Consensus       570 ~~l~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~  649 (763)
                      ..++....  .+++|+.|++++|.....+|.....++|+.|++++|...+.+|..+  ..+++|+.|++++|.....+|.
T Consensus       442 ~~~~~~~~--~l~~L~~L~L~~n~~~~~~p~~~~~~~L~~L~ls~n~l~~~~~~~~--~~l~~L~~L~Ls~N~l~~~~p~  517 (968)
T PLN00113        442 GRINSRKW--DMPSLQMLSLARNKFFGGLPDSFGSKRLENLDLSRNQFSGAVPRKL--GSLSELMQLKLSENKLSGEIPD  517 (968)
T ss_pred             CccChhhc--cCCCCcEEECcCceeeeecCcccccccceEEECcCCccCCccChhh--hhhhccCEEECcCCcceeeCCh
Confidence            44444322  3788888888888776677765556788888888887666777666  6788888888888733333332


Q ss_pred             ccCCCCCcEEEEecCCCCCCCccceEEecCCCCCccccCC---CCCCcCeEeeccCCCCccccCCCCCCCCcCceecccC
Q 039689          650 IQLPPSLKRLIIFRCDNLRFNSLRKLKISGGCPDLVSSPR---FPASLTELKISDMPSLERLSSIGENLTSLKFLDLDNC  726 (763)
Q Consensus       650 ~~~~~~L~~L~l~~c~~l~~~~L~~L~l~~~~~~l~~~~~---~~~~L~~L~l~~~~~l~~ip~~~~~l~~L~~L~l~~c  726 (763)
                      . +    .          .+.+|+.|++++ +.-...+|.   .+++|++|++++|.....+|..+..+++|++|++++|
T Consensus       518 ~-~----~----------~l~~L~~L~Ls~-N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~ls~N  581 (968)
T PLN00113        518 E-L----S----------SCKKLVSLDLSH-NQLSGQIPASFSEMPVLSQLDLSQNQLSGEIPKNLGNVESLVQVNISHN  581 (968)
T ss_pred             H-H----c----------CccCCCEEECCC-CcccccCChhHhCcccCCEEECCCCcccccCChhHhcCcccCEEeccCC
Confidence            1 1    0          234566666665 222223333   4678999999997777788888888899999999998


Q ss_pred             CCCccccCCCcccccceeeeccChh
Q 039689          727 PKLKYFSKQGLPKSLLRLIIDECPL  751 (763)
Q Consensus       727 ~~L~~l~~~~~~~~L~~L~i~~C~~  751 (763)
                      +-...+|..+...++....+.++|.
T Consensus       582 ~l~~~~p~~~~~~~~~~~~~~~n~~  606 (968)
T PLN00113        582 HLHGSLPSTGAFLAINASAVAGNID  606 (968)
T ss_pred             cceeeCCCcchhcccChhhhcCCcc
Confidence            7777777655444444444455543

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=100.00  E-value=1.1e-33  Score=338.91  Aligned_cols=507  Identities=19%  Similarity=0.169  Sum_probs=323.8

Q ss_pred             HHhcCceEEecCCCCCcchhhhhhccCCCCcccEEEecCCCCCc-cCcccCCCCcccEEecCCCCch-hcchhhh-hccc
Q 039689          168 WAAGETCFRMEDTPEGERRQNVLQRLLNLPRLRVFSLRGYNIFE-LPKAIENLKHLRFLDLSTTKIE-ILRESIN-TLYN  244 (763)
Q Consensus       168 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~~-lp~~~~~l~~L~~L~L~~~~i~-~lp~~~~-~L~~  244 (763)
                      |....+|+.|.+..+.           ...+++.|++++|.+.. +|..|..+++|++|+|++|.+. .+|..+. .+.+
T Consensus        51 w~~~~~~c~w~gv~c~-----------~~~~v~~L~L~~~~i~~~~~~~~~~l~~L~~L~Ls~n~~~~~ip~~~~~~l~~  119 (968)
T PLN00113         51 WNSSADVCLWQGITCN-----------NSSRVVSIDLSGKNISGKISSAIFRLPYIQTINLSNNQLSGPIPDDIFTTSSS  119 (968)
T ss_pred             CCCCCCCCcCcceecC-----------CCCcEEEEEecCCCccccCChHHhCCCCCCEEECCCCccCCcCChHHhccCCC
Confidence            4344556666665443           23478999999999775 4788999999999999999997 7888775 9999


Q ss_pred             ccEEeeccccccccccccccCcccccccccCCccccccccc-CCCccCCCceeeecCcccccCcccchhhhhcCcccccc
Q 039689          245 LHTLLLEDCRRLKKLCKDMGNLTKLHHLNNSNVGSLEEMLM-LKSLVHLQGTLEISRLENVKGVGDASEVQLNSKVNLKA  323 (763)
Q Consensus       245 L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~l~~-l~~L~~L~~~L~~~~~~~~~~~~~~~~~~l~~l~~L~~  323 (763)
                      |++|+|++|+....+|.  +.+++|++|++++|.....+|. ++++++|+ .|++.+..    .....+..+.++++|+.
T Consensus       120 L~~L~Ls~n~l~~~~p~--~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~-~L~L~~n~----l~~~~p~~~~~l~~L~~  192 (968)
T PLN00113        120 LRYLNLSNNNFTGSIPR--GSIPNLETLDLSNNMLSGEIPNDIGSFSSLK-VLDLGGNV----LVGKIPNSLTNLTSLEF  192 (968)
T ss_pred             CCEEECcCCccccccCc--cccCCCCEEECcCCcccccCChHHhcCCCCC-EEECccCc----ccccCChhhhhCcCCCe
Confidence            99999999766666765  5789999999999983334554 77788888 77776532    22233446778888888


Q ss_pred             eEEeeccCCCCCCccHHHHhhcCCCCCCc-eEEEeeeCCC-CCCCccCCCCCCCceEEEEeccCCCCCCC-CCCCCCCCC
Q 039689          324 LYLQWGVRDAVEPKTETQVIDMLKPHQKL-ELTITGYGGT-KFPIWLGDSLFSKLMLLKFDNCGTCTSLP-SVGQLPFLK  400 (763)
Q Consensus       324 L~l~~~~~~~~~~~~~~~~l~~l~~l~~L-~L~~~~~~~~-~~p~~~~~~~~~~L~~L~l~~~~~~~~l~-~l~~l~~L~  400 (763)
                      |++++|......       ...+..++.| .|.+.++... .+|.+++.  +++|++|++++|...+.+| .++.+++|+
T Consensus       193 L~L~~n~l~~~~-------p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~--l~~L~~L~L~~n~l~~~~p~~l~~l~~L~  263 (968)
T PLN00113        193 LTLASNQLVGQI-------PRELGQMKSLKWIYLGYNNLSGEIPYEIGG--LTSLNHLDLVYNNLTGPIPSSLGNLKNLQ  263 (968)
T ss_pred             eeccCCCCcCcC-------ChHHcCcCCccEEECcCCccCCcCChhHhc--CCCCCEEECcCceeccccChhHhCCCCCC
Confidence            888777543221       1233344455 5555544433 35555554  6677777777766555555 566677777


Q ss_pred             cceecccCCceEeCccccCCCcCCCCCCcceeeccccchhhhcCCCC---cCCcccEEEEecCcc---hhhcCCCCCccc
Q 039689          401 DPVISGMGRVKIVGSEFYGSSCSVSFPSLETLFFVDICSKLQGTLPE---RLLLLEKLNIFRCEQ---LLVTLQCLPALR  474 (763)
Q Consensus       401 ~L~l~~~~~l~~~~~~~~~~~~~~~f~~L~~L~l~~~~~~l~~~~~~---~~~~L~~L~l~~~~~---l~~~l~~l~~L~  474 (763)
                      +|++++|.....++..+      ..+++|++|++.+  +.+.+.+|.   .+++|+.|++.+|..   .+..+..+++|+
T Consensus       264 ~L~L~~n~l~~~~p~~l------~~l~~L~~L~Ls~--n~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~  335 (968)
T PLN00113        264 YLFLYQNKLSGPIPPSI------FSLQKLISLDLSD--NSLSGEIPELVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQ  335 (968)
T ss_pred             EEECcCCeeeccCchhH------hhccCcCEEECcC--CeeccCCChhHcCCCCCcEEECCCCccCCcCChhHhcCCCCC
Confidence            77776654433332222      2256666666665  334444442   345566666665542   223344566666


Q ss_pred             EEEEecCCcccccCCCccccceeccccchhhhhhcCCCCCCceEEEeccCCccccccccCcCCccccccCceeeccCCch
Q 039689          475 ELEIDGCKGVVLSSPTDLSSLKLVHSRDMAKEVFEQGLPKLERLEIQHVREQTYLWRSETRLPQDIRSLNRLQISRCPQL  554 (763)
Q Consensus       475 ~L~l~~~~~~~~~~~~~L~~L~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~p~~l~~L~~L~l~~~~~l  554 (763)
                      .|++++|....                  ..+..+..+++|+.|++++|....       .+|..+..+..         
T Consensus       336 ~L~L~~n~l~~------------------~~p~~l~~~~~L~~L~Ls~n~l~~-------~~p~~~~~~~~---------  381 (968)
T PLN00113        336 VLQLWSNKFSG------------------EIPKNLGKHNNLTVLDLSTNNLTG-------EIPEGLCSSGN---------  381 (968)
T ss_pred             EEECcCCCCcC------------------cCChHHhCCCCCcEEECCCCeeEe-------eCChhHhCcCC---------
Confidence            66666654321                  011122445667777777665443       33332222111         


Q ss_pred             hhhcceeeeccCCCcccccchhhhcCCCCcceEEEecCccccccCC-CCCCCCccEEEEccCCCCCCCchhhhcCCCCCc
Q 039689          555 ISLLRTVKIEDCNALESLPEAWMHNSNSSLESLKIRSCNSLVSFPD-FALPSQLRTVTIKGCDALESLPEAWMQNSSTSL  633 (763)
Q Consensus       555 ~~~L~~L~l~~~~~l~~l~~~~~~~~l~~L~~L~l~~c~~l~~~~~-~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L  633 (763)
                         |+.|++++|+..+.+|..+.  .+++|+.|++++|+....+|. +..+++|+.|++++|...+.++..+  ..+++|
T Consensus       382 ---L~~L~l~~n~l~~~~p~~~~--~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~--~~l~~L  454 (968)
T PLN00113        382 ---LFKLILFSNSLEGEIPKSLG--ACRSLRRVRLQDNSFSGELPSEFTKLPLVYFLDISNNNLQGRINSRK--WDMPSL  454 (968)
T ss_pred             ---CCEEECcCCEecccCCHHHh--CCCCCCEEECcCCEeeeECChhHhcCCCCCEEECcCCcccCccChhh--ccCCCC
Confidence               45555555444445555432  267777777777665445554 4566777777777776555555554  567777


Q ss_pred             ceEeeccCCCccccccccCCCCCcEEEEecCCCC--------CCCccceEEecCCCCCccccCC---CCCCcCeEeeccC
Q 039689          634 ESLAIDSCDSLTYIARIQLPPSLKRLIIFRCDNL--------RFNSLRKLKISGGCPDLVSSPR---FPASLTELKISDM  702 (763)
Q Consensus       634 ~~L~l~~c~~l~~l~~~~~~~~L~~L~l~~c~~l--------~~~~L~~L~l~~~~~~l~~~~~---~~~~L~~L~l~~~  702 (763)
                      +.|++++|.....+|.....++|+.|++++|...        .+++|+.|++++ +.-...+|.   .+++|++|++++|
T Consensus       455 ~~L~L~~n~~~~~~p~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~-N~l~~~~p~~~~~l~~L~~L~Ls~N  533 (968)
T PLN00113        455 QMLSLARNKFFGGLPDSFGSKRLENLDLSRNQFSGAVPRKLGSLSELMQLKLSE-NKLSGEIPDELSSCKKLVSLDLSHN  533 (968)
T ss_pred             cEEECcCceeeeecCcccccccceEEECcCCccCCccChhhhhhhccCEEECcC-CcceeeCChHHcCccCCCEEECCCC
Confidence            7777777754444444333456777777766532        456788899987 433334554   5689999999998


Q ss_pred             CCCccccCCCCCCCCcCceecccCCCCccccCC-CcccccceeeeccChh
Q 039689          703 PSLERLSSIGENLTSLKFLDLDNCPKLKYFSKQ-GLPKSLLRLIIDECPL  751 (763)
Q Consensus       703 ~~l~~ip~~~~~l~~L~~L~l~~c~~L~~l~~~-~~~~~L~~L~i~~C~~  751 (763)
                      .....+|..+..+++|++|++++|.-...+|.. ...++|+.|++++|+-
T Consensus       534 ~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~ls~N~l  583 (968)
T PLN00113        534 QLSGQIPASFSEMPVLSQLDLSQNQLSGEIPKNLGNVESLVQVNISHNHL  583 (968)
T ss_pred             cccccCChhHhCcccCCEEECCCCcccccCChhHhcCcccCEEeccCCcc
Confidence            777788888899999999999998766677762 3347899999999973

>PLN03210 Resistant to P

Probab=99.93  E-value=6.4e-25  Score=262.80  Aligned_cols=407  Identities=21%  Similarity=0.295  Sum_probs=238.7

Q ss_pred             HHHHHHHHHHcCCcccCCCcccHHHHHHHHHHHHHHCCCcccccCCCCcceechhHHHHHHHHhcCce-EEecCCC-CCc
Q 039689          107 KEQIILLWAAEGFLHQENSKRKMEDLGREFVEELHSRSLFHQSTYDASRFVMHDLINDLTRWAAGETC-FRMEDTP-EGE  184 (763)
Q Consensus       107 ~~~li~~w~~~g~~~~~~~~~~~~~~~~~~~~~L~~~~ll~~~~~~~~~~~mhdli~~~~~~~~~~~~-~~~~~~~-~~~  184 (763)
                      .+.-++..+...++........|+|..+++-.+.+..---  ..+.....+.+.-+.++.....+.+. ..+.-.. ...
T Consensus       468 ~~~~l~~L~~ksLi~~~~~~~~MHdLl~~~~r~i~~~~~~--~~~~r~~l~~~~di~~vl~~~~g~~~v~~i~l~~~~~~  545 (1153)
T PLN03210        468 VNIGLKNLVDKSLIHVREDIVEMHSLLQEMGKEIVRAQSN--EPGEREFLVDAKDICDVLEDNTGTKKVLGITLDIDEID  545 (1153)
T ss_pred             chhChHHHHhcCCEEEcCCeEEhhhHHHHHHHHHHHhhcC--CCCcceeEeCHHHHHHHHHhCcccceeeEEEeccCccc
Confidence            3344667778888876555567777666666666543221  11222334434334443332222111 1110000 001


Q ss_pred             chhhhhhccCCCCcccEEEecCCCC-------CccCcccCCCC-cccEEecCCCCchhcchhhhhcccccEEeecccccc
Q 039689          185 RRQNVLQRLLNLPRLRVFSLRGYNI-------FELPKAIENLK-HLRFLDLSTTKIEILRESINTLYNLHTLLLEDCRRL  256 (763)
Q Consensus       185 ~~~~~~~~~~~l~~Lr~L~L~~~~i-------~~lp~~~~~l~-~L~~L~L~~~~i~~lp~~~~~L~~L~~L~L~~~~~l  256 (763)
                      ..+.....|.++++|+.|.+..+..       ..+|..|..++ +||+|++.++.++.+|..| .+.+|+.|++++ +.+
T Consensus       546 ~~~i~~~aF~~m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~~l~~lP~~f-~~~~L~~L~L~~-s~l  623 (1153)
T PLN03210        546 ELHIHENAFKGMRNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKYPLRCMPSNF-RPENLVKLQMQG-SKL  623 (1153)
T ss_pred             eeeecHHHHhcCccccEEEEecccccccccceeecCcchhhcCcccEEEEecCCCCCCCCCcC-CccCCcEEECcC-ccc
Confidence            1122345678899999999976532       23677777764 6999999999999999888 579999999999 579


Q ss_pred             ccccccccCcccccccccCCcccccccccCCCccCCCceeeecCcccccCcccchhhhhcCcccccceEEeeccCCCCCC
Q 039689          257 KKLCKDMGNLTKLHHLNNSNVGSLEEMLMLKSLVHLQGTLEISRLENVKGVGDASEVQLNSKVNLKALYLQWGVRDAVEP  336 (763)
Q Consensus       257 ~~lp~~i~~L~~L~~L~l~~~~~l~~l~~l~~L~~L~~~L~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~  336 (763)
                      ..+|.++..+++|+.|+++++..+..+|.+..+++|+ .|.+.++..                                 
T Consensus       624 ~~L~~~~~~l~~Lk~L~Ls~~~~l~~ip~ls~l~~Le-~L~L~~c~~---------------------------------  669 (1153)
T PLN03210        624 EKLWDGVHSLTGLRNIDLRGSKNLKEIPDLSMATNLE-TLKLSDCSS---------------------------------  669 (1153)
T ss_pred             cccccccccCCCCCEEECCCCCCcCcCCccccCCccc-EEEecCCCC---------------------------------
Confidence            9999999999999999999987566666544444444 333322111                                 


Q ss_pred             ccHHHHhhcCCCCCCceEEEeeeCCCCCCCccCCCCCCCceEEEEeccCCCCCCCCCCCCCCCCcceecccCCceEeCcc
Q 039689          337 KTETQVIDMLKPHQKLELTITGYGGTKFPIWLGDSLFSKLMLLKFDNCGTCTSLPSVGQLPFLKDPVISGMGRVKIVGSE  416 (763)
Q Consensus       337 ~~~~~~l~~l~~l~~L~L~~~~~~~~~~p~~~~~~~~~~L~~L~l~~~~~~~~l~~l~~l~~L~~L~l~~~~~l~~~~~~  416 (763)
                                              ...+|..+..  +++|+.|++++|..++.+|....+++|+.|++++|..+..    
T Consensus       670 ------------------------L~~lp~si~~--L~~L~~L~L~~c~~L~~Lp~~i~l~sL~~L~Lsgc~~L~~----  719 (1153)
T PLN03210        670 ------------------------LVELPSSIQY--LNKLEDLDMSRCENLEILPTGINLKSLYRLNLSGCSRLKS----  719 (1153)
T ss_pred             ------------------------ccccchhhhc--cCCCCEEeCCCCCCcCccCCcCCCCCCCEEeCCCCCCccc----
Confidence                                    1223444444  6777777777777777776544666677776666543322    


Q ss_pred             ccCCCcCCCCCCcceeeccccchhhhcCCCCcCCcccEEEEecCc--chhhcCCCCCcccEEEEecCCcccccCCCcccc
Q 039689          417 FYGSSCSVSFPSLETLFFVDICSKLQGTLPERLLLLEKLNIFRCE--QLLVTLQCLPALRELEIDGCKGVVLSSPTDLSS  494 (763)
Q Consensus       417 ~~~~~~~~~f~~L~~L~l~~~~~~l~~~~~~~~~~L~~L~l~~~~--~l~~~l~~l~~L~~L~l~~~~~~~~~~~~~L~~  494 (763)
                                                  +|...++|+.|++.++.  .++..+ .+++|++|.+.++....+..  .+..
T Consensus       720 ----------------------------~p~~~~nL~~L~L~~n~i~~lP~~~-~l~~L~~L~l~~~~~~~l~~--~~~~  768 (1153)
T PLN03210        720 ----------------------------FPDISTNISWLDLDETAIEEFPSNL-RLENLDELILCEMKSEKLWE--RVQP  768 (1153)
T ss_pred             ----------------------------cccccCCcCeeecCCCccccccccc-cccccccccccccchhhccc--cccc
Confidence                                        22223344444444443  111111 35666666666543211100  0000


Q ss_pred             ceeccccchhhhhhcCCCCCCceEEEeccCCccccccccCcCCccccccCceeeccCCchhhhcceeeeccCCCcccccc
Q 039689          495 LKLVHSRDMAKEVFEQGLPKLERLEIQHVREQTYLWRSETRLPQDIRSLNRLQISRCPQLISLLRTVKIEDCNALESLPE  574 (763)
Q Consensus       495 L~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~p~~l~~L~~L~l~~~~~l~~~L~~L~l~~~~~l~~l~~  574 (763)
                               ........+++|++|++++|..+.       .+|..+.++..            |+.|++++|+.++.+|.
T Consensus       769 ---------l~~~~~~~~~sL~~L~Ls~n~~l~-------~lP~si~~L~~------------L~~L~Ls~C~~L~~LP~  820 (1153)
T PLN03210        769 ---------LTPLMTMLSPSLTRLFLSDIPSLV-------ELPSSIQNLHK------------LEHLEIENCINLETLPT  820 (1153)
T ss_pred             ---------cchhhhhccccchheeCCCCCCcc-------ccChhhhCCCC------------CCEEECCCCCCcCeeCC
Confidence                     000111235677777777776655       45544443332            56666666666777776


Q ss_pred             hhhhcCCCCcceEEEecCccccccCCCCCCCCccEEEEccCCCCCCCchhhhcCCCCCcceEeeccCCCccccc
Q 039689          575 AWMHNSNSSLESLKIRSCNSLVSFPDFALPSQLRTVTIKGCDALESLPEAWMQNSSTSLESLAIDSCDSLTYIA  648 (763)
Q Consensus       575 ~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~  648 (763)
                      .+   .+++|+.|++++|..+..+|.  .+++|+.|++++| .++.+|..+  ..+++|+.|++++|++++.++
T Consensus       821 ~~---~L~sL~~L~Ls~c~~L~~~p~--~~~nL~~L~Ls~n-~i~~iP~si--~~l~~L~~L~L~~C~~L~~l~  886 (1153)
T PLN03210        821 GI---NLESLESLDLSGCSRLRTFPD--ISTNISDLNLSRT-GIEEVPWWI--EKFSNLSFLDMNGCNNLQRVS  886 (1153)
T ss_pred             CC---CccccCEEECCCCCccccccc--cccccCEeECCCC-CCccChHHH--hcCCCCCEEECCCCCCcCccC
Confidence            53   367777777777777776664  3457777777776 556677666  667777777777776666554

syringae 6; Provisional

>KOG0472 consensus Leucine-rich repeat protein [Function unknown]

Probab=99.91  E-value=8.4e-28  Score=232.66  Aligned_cols=448  Identities=23%  Similarity=0.308  Sum_probs=265.5

Q ss_pred             hhhccCCCCcccEEEecCCCCCccCcccCCCCcccEEecCCCCchhcchhhhhcccccEEeeccccccccccccccCccc
Q 039689          189 VLQRLLNLPRLRVFSLRGYNIFELPKAIENLKHLRFLDLSTTKIEILRESINTLYNLHTLLLEDCRRLKKLCKDMGNLTK  268 (763)
Q Consensus       189 ~~~~~~~l~~Lr~L~L~~~~i~~lp~~~~~l~~L~~L~L~~~~i~~lp~~~~~L~~L~~L~L~~~~~l~~lp~~i~~L~~  268 (763)
                      +.+++.++..+.+|++.+|++..+|.+++.+..++.|+.++|.++.+|+.++.+.+|+.|+.++ +.+.++|++++.+..
T Consensus        60 l~~dl~nL~~l~vl~~~~n~l~~lp~aig~l~~l~~l~vs~n~ls~lp~~i~s~~~l~~l~~s~-n~~~el~~~i~~~~~  138 (565)
T KOG0472|consen   60 LREDLKNLACLTVLNVHDNKLSQLPAAIGELEALKSLNVSHNKLSELPEQIGSLISLVKLDCSS-NELKELPDSIGRLLD  138 (565)
T ss_pred             ccHhhhcccceeEEEeccchhhhCCHHHHHHHHHHHhhcccchHhhccHHHhhhhhhhhhhccc-cceeecCchHHHHhh
Confidence            3456678889999999999999999999999999999999999999999999999999999999 688999999999999


Q ss_pred             ccccccCCccccccccc-CCCccCCCceeeecCcccccCcccchhhhhcCcccccceEEeeccCCCCCCccHHHHhhcCC
Q 039689          269 LHHLNNSNVGSLEEMLM-LKSLVHLQGTLEISRLENVKGVGDASEVQLNSKVNLKALYLQWGVRDAVEPKTETQVIDMLK  347 (763)
Q Consensus       269 L~~L~l~~~~~l~~l~~-l~~L~~L~~~L~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~l~  347 (763)
                      |+.|+..+|. +..+|. +.++..+. ++.+.+    +......+ ..-.++.|++|+.                     
T Consensus       139 l~dl~~~~N~-i~slp~~~~~~~~l~-~l~~~~----n~l~~l~~-~~i~m~~L~~ld~---------------------  190 (565)
T KOG0472|consen  139 LEDLDATNNQ-ISSLPEDMVNLSKLS-KLDLEG----NKLKALPE-NHIAMKRLKHLDC---------------------  190 (565)
T ss_pred             hhhhhccccc-cccCchHHHHHHHHH-Hhhccc----cchhhCCH-HHHHHHHHHhccc---------------------
Confidence            9999998887 666654 33333222 111111    11111111 2222555555544                     


Q ss_pred             CCCCceEEEeeeCCCCCCCccCCCCCCCceEEEEeccCCCCCCCCCCCCCCCCcceecccCCceEeCccccCCCcCCCCC
Q 039689          348 PHQKLELTITGYGGTKFPIWLGDSLFSKLMLLKFDNCGTCTSLPSVGQLPFLKDPVISGMGRVKIVGSEFYGSSCSVSFP  427 (763)
Q Consensus       348 ~l~~L~L~~~~~~~~~~p~~~~~~~~~~L~~L~l~~~~~~~~l~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~f~  427 (763)
                               ..+....+|+.++.  +.+|..|++..|+ +..+|.|+....|+++.++. +.++.++.+..     ..++
T Consensus       191 ---------~~N~L~tlP~~lg~--l~~L~~LyL~~Nk-i~~lPef~gcs~L~Elh~g~-N~i~~lpae~~-----~~L~  252 (565)
T KOG0472|consen  191 ---------NSNLLETLPPELGG--LESLELLYLRRNK-IRFLPEFPGCSLLKELHVGE-NQIEMLPAEHL-----KHLN  252 (565)
T ss_pred             ---------chhhhhcCChhhcc--hhhhHHHHhhhcc-cccCCCCCccHHHHHHHhcc-cHHHhhHHHHh-----cccc
Confidence                     33445567777776  7888888888884 55678888888888888876 34554444332     2377


Q ss_pred             CcceeeccccchhhhcCCCC---cCCcccEEEEecCc--chhhcCCCCCcccEEEEecCCccccc----CC---Cccccc
Q 039689          428 SLETLFFVDICSKLQGTLPE---RLLLLEKLNIFRCE--QLLVTLQCLPALRELEIDGCKGVVLS----SP---TDLSSL  495 (763)
Q Consensus       428 ~L~~L~l~~~~~~l~~~~~~---~~~~L~~L~l~~~~--~l~~~l~~l~~L~~L~l~~~~~~~~~----~~---~~L~~L  495 (763)
                      ++..|++.+  +++. ..|+   -+.+|++|+++++.  .++..++++ .|+.|-+.||+.....    ..   .-+++|
T Consensus       253 ~l~vLDLRd--Nklk-e~Pde~clLrsL~rLDlSNN~is~Lp~sLgnl-hL~~L~leGNPlrTiRr~ii~~gT~~vLKyL  328 (565)
T KOG0472|consen  253 SLLVLDLRD--NKLK-EVPDEICLLRSLERLDLSNNDISSLPYSLGNL-HLKFLALEGNPLRTIRREIISKGTQEVLKYL  328 (565)
T ss_pred             cceeeeccc--cccc-cCchHHHHhhhhhhhcccCCccccCCcccccc-eeeehhhcCCchHHHHHHHHcccHHHHHHHH
Confidence            888888887  5555 5564   35678888888875  566677888 8999999999754421    00   001111


Q ss_pred             ee-ccccchhhhhhcCCCCCCceEEEeccCCccccccccCcCC--ccccccCceeeccC-----Cch------hhhccee
Q 039689          496 KL-VHSRDMAKEVFEQGLPKLERLEIQHVREQTYLWRSETRLP--QDIRSLNRLQISRC-----PQL------ISLLRTV  561 (763)
Q Consensus       496 ~~-~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~p--~~l~~L~~L~l~~~-----~~l------~~~L~~L  561 (763)
                      .- ..+...         .+      +.-............+|  ..+-+.+.|++++-     |.-      ..+.+..
T Consensus       329 rs~~~~dgl---------S~------se~~~e~~~t~~~~~~~~~~~~i~tkiL~~s~~qlt~VPdEVfea~~~~~Vt~V  393 (565)
T KOG0472|consen  329 RSKIKDDGL---------SQ------SEGGTETAMTLPSESFPDIYAIITTKILDVSDKQLTLVPDEVFEAAKSEIVTSV  393 (565)
T ss_pred             HHhhccCCC---------CC------CcccccccCCCCCCcccchhhhhhhhhhcccccccccCCHHHHHHhhhcceEEE
Confidence            00 000000         00      00000000000000111  11122333333321     000      0013444


Q ss_pred             eeccCCCcccccchhhhcCCCCcceEEEecCccccccCC-CCCCCCccEEEEccCCCCCCCchhhhcCCCCCcceEeecc
Q 039689          562 KIEDCNALESLPEAWMHNSNSSLESLKIRSCNSLVSFPD-FALPSQLRTVTIKGCDALESLPEAWMQNSSTSLESLAIDS  640 (763)
Q Consensus       562 ~l~~~~~l~~l~~~~~~~~l~~L~~L~l~~c~~l~~~~~-~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~  640 (763)
                      +++. |.+..+|..+..  +..+...-+.+++.+..+|. +..+++|..|++++| .+..+|..+  ..+..|+.|+++.
T Consensus       394 nfsk-NqL~elPk~L~~--lkelvT~l~lsnn~isfv~~~l~~l~kLt~L~L~NN-~Ln~LP~e~--~~lv~Lq~LnlS~  467 (565)
T KOG0472|consen  394 NFSK-NQLCELPKRLVE--LKELVTDLVLSNNKISFVPLELSQLQKLTFLDLSNN-LLNDLPEEM--GSLVRLQTLNLSF  467 (565)
T ss_pred             eccc-chHhhhhhhhHH--HHHHHHHHHhhcCccccchHHHHhhhcceeeecccc-hhhhcchhh--hhhhhhheecccc
Confidence            4444 556666655322  22232222223344343333 455667777777776 567777766  5666677777776


Q ss_pred             CCCccccccccCCCCCcEEEEecCCCCCCCccceEEecCCCCCccccCC----CCCCcCeEeeccCCCCccccCCCCCCC
Q 039689          641 CDSLTYIARIQLPPSLKRLIIFRCDNLRFNSLRKLKISGGCPDLVSSPR----FPASLTELKISDMPSLERLSSIGENLT  716 (763)
Q Consensus       641 c~~l~~l~~~~~~~~L~~L~l~~c~~l~~~~L~~L~l~~~~~~l~~~~~----~~~~L~~L~l~~~~~l~~ip~~~~~l~  716 (763)
                      | +.+.+|.....               ...++.+-.++  +.+..++.    .+.+|.+|++.+ +.+..||..+++++
T Consensus       468 N-rFr~lP~~~y~---------------lq~lEtllas~--nqi~~vd~~~l~nm~nL~tLDL~n-Ndlq~IPp~Lgnmt  528 (565)
T KOG0472|consen  468 N-RFRMLPECLYE---------------LQTLETLLASN--NQIGSVDPSGLKNMRNLTTLDLQN-NDLQQIPPILGNMT  528 (565)
T ss_pred             c-ccccchHHHhh---------------HHHHHHHHhcc--ccccccChHHhhhhhhcceeccCC-CchhhCChhhcccc
Confidence            6 55555543221               11122222221  23333333    456788888887 78888888888888


Q ss_pred             CcCceecccCC
Q 039689          717 SLKFLDLDNCP  727 (763)
Q Consensus       717 ~L~~L~l~~c~  727 (763)
                      +|++|++.++|
T Consensus       529 nL~hLeL~gNp  539 (565)
T KOG0472|consen  529 NLRHLELDGNP  539 (565)
T ss_pred             ceeEEEecCCc
Confidence            88888888875

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]

Probab=99.90  E-value=5.3e-25  Score=222.88  Aligned_cols=356  Identities=23%  Similarity=0.257  Sum_probs=233.6

Q ss_pred             CcccEEEecCCCCCcc-CcccCCCCcccEEecCCCCchhcchhhhhcccccEEeeccccccccccc-cccCccccccccc
Q 039689          197 PRLRVFSLRGYNIFEL-PKAIENLKHLRFLDLSTTKIEILRESINTLYNLHTLLLEDCRRLKKLCK-DMGNLTKLHHLNN  274 (763)
Q Consensus       197 ~~Lr~L~L~~~~i~~l-p~~~~~l~~L~~L~L~~~~i~~lp~~~~~L~~L~~L~L~~~~~l~~lp~-~i~~L~~L~~L~l  274 (763)
                      ..-++||+++|.+..+ +..|.++++|+.+++.+|.++.+|...+...+|+.|+|.+ +.+..+.. +++.++.|+.|||
T Consensus        78 ~~t~~LdlsnNkl~~id~~~f~nl~nLq~v~l~~N~Lt~IP~f~~~sghl~~L~L~~-N~I~sv~se~L~~l~alrslDL  156 (873)
T KOG4194|consen   78 SQTQTLDLSNNKLSHIDFEFFYNLPNLQEVNLNKNELTRIPRFGHESGHLEKLDLRH-NLISSVTSEELSALPALRSLDL  156 (873)
T ss_pred             cceeeeeccccccccCcHHHHhcCCcceeeeeccchhhhcccccccccceeEEeeec-cccccccHHHHHhHhhhhhhhh
Confidence            3457799999998887 5778899999999999999999998888888899999998 57776654 4888889999999


Q ss_pred             CCcccccccccCCCccCCCceeeecCcccccCcccchhhhhcCcccccceEEeeccCCCCCCccHHHHhhcCCCCCCceE
Q 039689          275 SNVGSLEEMLMLKSLVHLQGTLEISRLENVKGVGDASEVQLNSKVNLKALYLQWGVRDAVEPKTETQVIDMLKPHQKLEL  354 (763)
Q Consensus       275 ~~~~~l~~l~~l~~L~~L~~~L~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~l~~l~~L~L  354 (763)
                      +.|. +.+++.                           ..+....++++|+++.|.++.....       .+..      
T Consensus       157 SrN~-is~i~~---------------------------~sfp~~~ni~~L~La~N~It~l~~~-------~F~~------  195 (873)
T KOG4194|consen  157 SRNL-ISEIPK---------------------------PSFPAKVNIKKLNLASNRITTLETG-------HFDS------  195 (873)
T ss_pred             hhch-hhcccC---------------------------CCCCCCCCceEEeeccccccccccc-------cccc------
Confidence            8886 544432                           2344556788888877754443221       1111      


Q ss_pred             EEeeeCCCCCCCccCCCCCCCceEEEEeccCCCCCCC--CCCCCCCCCcceecccCCceEeCccccCCCcCCCCCCccee
Q 039689          355 TITGYGGTKFPIWLGDSLFSKLMLLKFDNCGTCTSLP--SVGQLPFLKDPVISGMGRVKIVGSEFYGSSCSVSFPSLETL  432 (763)
Q Consensus       355 ~~~~~~~~~~p~~~~~~~~~~L~~L~l~~~~~~~~l~--~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~f~~L~~L  432 (763)
                                        +.+|..|.|+.|. +..+|  .|..+|.|+.|++..+..-...+..|.|      +++|+.|
T Consensus       196 ------------------lnsL~tlkLsrNr-ittLp~r~Fk~L~~L~~LdLnrN~irive~ltFqg------L~Sl~nl  250 (873)
T KOG4194|consen  196 ------------------LNSLLTLKLSRNR-ITTLPQRSFKRLPKLESLDLNRNRIRIVEGLTFQG------LPSLQNL  250 (873)
T ss_pred             ------------------cchheeeecccCc-ccccCHHHhhhcchhhhhhccccceeeehhhhhcC------chhhhhh
Confidence                              4556666666653 33444  4556666777766664322222444433      6666666


Q ss_pred             ecccc-chhhhcCCCCcCCcccEEEEecCcch---hhcCCCCCcccEEEEecCCcccccCCCccccceeccccchhhhhh
Q 039689          433 FFVDI-CSKLQGTLPERLLLLEKLNIFRCEQL---LVTLQCLPALRELEIDGCKGVVLSSPTDLSSLKLVHSRDMAKEVF  508 (763)
Q Consensus       433 ~l~~~-~~~l~~~~~~~~~~L~~L~l~~~~~l---~~~l~~l~~L~~L~l~~~~~~~~~~~~~L~~L~~~~~~~~~~~~~  508 (763)
                      .+..+ ..++..-..-.+.++++|++..+.-.   ...+-++++|+.|+++.|....+..                  ..
T Consensus       251 klqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI~rih~------------------d~  312 (873)
T KOG4194|consen  251 KLQRNDISKLDDGAFYGLEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYNAIQRIHI------------------DS  312 (873)
T ss_pred             hhhhcCcccccCcceeeecccceeecccchhhhhhcccccccchhhhhccchhhhheeec------------------ch
Confidence            66542 11222222334566666666665422   2245678888888888886544221                  11


Q ss_pred             cCCCCCCceEEEeccCCccccccccCcCC-ccccccCceeeccCCchhhhcceeeeccCCCcccccchhhhcCCCCcceE
Q 039689          509 EQGLPKLERLEIQHVREQTYLWRSETRLP-QDIRSLNRLQISRCPQLISLLRTVKIEDCNALESLPEAWMHNSNSSLESL  587 (763)
Q Consensus       509 ~~~~~~L~~L~l~~~~~l~~l~~~~~~~p-~~l~~L~~L~l~~~~~l~~~L~~L~l~~~~~l~~l~~~~~~~~l~~L~~L  587 (763)
                      ....++|++|++++|....        ++ +++.-|..            |++|.+++ |.+..+.+..+. .+++|++|
T Consensus       313 WsftqkL~~LdLs~N~i~~--------l~~~sf~~L~~------------Le~LnLs~-Nsi~~l~e~af~-~lssL~~L  370 (873)
T KOG4194|consen  313 WSFTQKLKELDLSSNRITR--------LDEGSFRVLSQ------------LEELNLSH-NSIDHLAEGAFV-GLSSLHKL  370 (873)
T ss_pred             hhhcccceeEecccccccc--------CChhHHHHHHH------------hhhhcccc-cchHHHHhhHHH-Hhhhhhhh
Confidence            2557889999999987543        22 22222111            45555555 778888777444 48999999


Q ss_pred             EEecCccccccCC----CCCCCCccEEEEccCCCCCCCchhhhcCCCCCcceEeeccCCCccccccccC-CCCCcEEEEe
Q 039689          588 KIRSCNSLVSFPD----FALPSQLRTVTIKGCDALESLPEAWMQNSSTSLESLAIDSCDSLTYIARIQL-PPSLKRLIIF  662 (763)
Q Consensus       588 ~l~~c~~l~~~~~----~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~-~~~L~~L~l~  662 (763)
                      ++++|.....+.+    +..+++|+.|++.+| +++.+|...+ .++++|++|++.+| -+.++...+| +-.|++|.+.
T Consensus       371 dLr~N~ls~~IEDaa~~f~gl~~LrkL~l~gN-qlk~I~krAf-sgl~~LE~LdL~~N-aiaSIq~nAFe~m~Lk~Lv~n  447 (873)
T KOG4194|consen  371 DLRSNELSWCIEDAAVAFNGLPSLRKLRLTGN-QLKSIPKRAF-SGLEALEHLDLGDN-AIASIQPNAFEPMELKELVMN  447 (873)
T ss_pred             cCcCCeEEEEEecchhhhccchhhhheeecCc-eeeecchhhh-ccCcccceecCCCC-cceeecccccccchhhhhhhc
Confidence            9988764333332    566899999999998 7888887655 89999999999988 6667766666 3466666543

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]

Probab=99.89  E-value=1.5e-25  Score=239.17  Aligned_cols=90  Identities=28%  Similarity=0.346  Sum_probs=82.7

Q ss_pred             CCCCcccEEEecCCCCCccCcccCCCCcccEEecCCCCchhcchhhhhcccccEEeeccccccccccccccCcccccccc
Q 039689          194 LNLPRLRVFSLRGYNIFELPKAIENLKHLRFLDLSTTKIEILRESINTLYNLHTLLLEDCRRLKKLCKDMGNLTKLHHLN  273 (763)
Q Consensus       194 ~~l~~Lr~L~L~~~~i~~lp~~~~~l~~L~~L~L~~~~i~~lp~~~~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~  273 (763)
                      .+.-+|+.||+++|.+..+|..+..+.+|+.|+++.|.|..+|.+++++.+|++|+|.+ +.+..+|.++..+++|+.|+
T Consensus        42 ~~~v~L~~l~lsnn~~~~fp~~it~l~~L~~ln~s~n~i~~vp~s~~~~~~l~~lnL~~-n~l~~lP~~~~~lknl~~Ld  120 (1081)
T KOG0618|consen   42 EKRVKLKSLDLSNNQISSFPIQITLLSHLRQLNLSRNYIRSVPSSCSNMRNLQYLNLKN-NRLQSLPASISELKNLQYLD  120 (1081)
T ss_pred             hheeeeEEeeccccccccCCchhhhHHHHhhcccchhhHhhCchhhhhhhcchhheecc-chhhcCchhHHhhhcccccc
Confidence            34455999999999999999999999999999999999999999999999999999998 79999999999999999999


Q ss_pred             cCCccccccccc
Q 039689          274 NSNVGSLEEMLM  285 (763)
Q Consensus       274 l~~~~~l~~l~~  285 (763)
                      +++|. +..+|.
T Consensus       121 lS~N~-f~~~Pl  131 (1081)
T KOG0618|consen  121 LSFNH-FGPIPL  131 (1081)
T ss_pred             cchhc-cCCCch
Confidence            99998 655554

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]

Probab=99.88  E-value=1.9e-23  Score=211.65  Aligned_cols=80  Identities=18%  Similarity=0.200  Sum_probs=63.4

Q ss_pred             cccEEEecCCCCCccC-cccCCC--CcccEEecCCCCchhc-chhhhhcccccEEeeccccccccccccccCcccccccc
Q 039689          198 RLRVFSLRGYNIFELP-KAIENL--KHLRFLDLSTTKIEIL-RESINTLYNLHTLLLEDCRRLKKLCKDMGNLTKLHHLN  273 (763)
Q Consensus       198 ~Lr~L~L~~~~i~~lp-~~~~~l--~~L~~L~L~~~~i~~l-p~~~~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~  273 (763)
                      .-+.||.+++.+..+. ..+.+.  ..-+.||+++|.+..+ +..|.++++|+.+++.+ +.+..+|...+...+|+.|+
T Consensus        53 ~~~lldcs~~~lea~~~~~l~g~lp~~t~~LdlsnNkl~~id~~~f~nl~nLq~v~l~~-N~Lt~IP~f~~~sghl~~L~  131 (873)
T KOG4194|consen   53 NTRLLDCSDRELEAIDKSRLKGFLPSQTQTLDLSNNKLSHIDFEFFYNLPNLQEVNLNK-NELTRIPRFGHESGHLEKLD  131 (873)
T ss_pred             CceeeecCccccccccccccCCcCccceeeeeccccccccCcHHHHhcCCcceeeeecc-chhhhcccccccccceeEEe
Confidence            3467788888876652 222222  3456799999999987 77889999999999999 79999999777778899999


Q ss_pred             cCCcc
Q 039689          274 NSNVG  278 (763)
Q Consensus       274 l~~~~  278 (763)
                      |.+|.
T Consensus       132 L~~N~  136 (873)
T KOG4194|consen  132 LRHNL  136 (873)
T ss_pred             eeccc
Confidence            99886

>KOG0472 consensus Leucine-rich repeat protein [Function unknown]

Probab=99.88  E-value=5.3e-26  Score=220.25  Aligned_cols=460  Identities=19%  Similarity=0.209  Sum_probs=270.7

Q ss_pred             CcccEEEecCCCCCccCcccCCCCcccEEecCCCCchhcchhhhhcccccEEeeccccccccccccccCcccccccccCC
Q 039689          197 PRLRVFSLRGYNIFELPKAIENLKHLRFLDLSTTKIEILRESINTLYNLHTLLLEDCRRLKKLCKDMGNLTKLHHLNNSN  276 (763)
Q Consensus       197 ~~Lr~L~L~~~~i~~lp~~~~~l~~L~~L~L~~~~i~~lp~~~~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l~~  276 (763)
                      ..+..|++++|.+..+.+.+.++..|.+|++.+|.+.++|++++.+..++.|+.++ +++.++|++++++.+|++|+.++
T Consensus        45 v~l~~lils~N~l~~l~~dl~nL~~l~vl~~~~n~l~~lp~aig~l~~l~~l~vs~-n~ls~lp~~i~s~~~l~~l~~s~  123 (565)
T KOG0472|consen   45 VDLQKLILSHNDLEVLREDLKNLACLTVLNVHDNKLSQLPAAIGELEALKSLNVSH-NKLSELPEQIGSLISLVKLDCSS  123 (565)
T ss_pred             cchhhhhhccCchhhccHhhhcccceeEEEeccchhhhCCHHHHHHHHHHHhhccc-chHhhccHHHhhhhhhhhhhccc
Confidence            45677899999999998889999999999999999999999999999999999999 79999999999999999999999


Q ss_pred             ccccccccc-CCCccCCCceeeecCcccccCcccchhhhhcCcccccceEEeeccCCCCCCccHHHHhhcCCCCCCceEE
Q 039689          277 VGSLEEMLM-LKSLVHLQGTLEISRLENVKGVGDASEVQLNSKVNLKALYLQWGVRDAVEPKTETQVIDMLKPHQKLELT  355 (763)
Q Consensus       277 ~~~l~~l~~-l~~L~~L~~~L~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~l~~l~~L~L~  355 (763)
                      +. +.+++. ++.+-.+. .+.     ..++.....+..+.++.++..+                              .
T Consensus       124 n~-~~el~~~i~~~~~l~-dl~-----~~~N~i~slp~~~~~~~~l~~l------------------------------~  166 (565)
T KOG0472|consen  124 NE-LKELPDSIGRLLDLE-DLD-----ATNNQISSLPEDMVNLSKLSKL------------------------------D  166 (565)
T ss_pred             cc-eeecCchHHHHhhhh-hhh-----ccccccccCchHHHHHHHHHHh------------------------------h
Confidence            98 555443 33332222 111     1111111122222233333333                              3


Q ss_pred             EeeeCCCCCCCccCCCCCCCceEEEEeccCCCCCCC-CCCCCCCCCcceecccCCceEeCccccCCCcCCCCCCcceeec
Q 039689          356 ITGYGGTKFPIWLGDSLFSKLMLLKFDNCGTCTSLP-SVGQLPFLKDPVISGMGRVKIVGSEFYGSSCSVSFPSLETLFF  434 (763)
Q Consensus       356 ~~~~~~~~~p~~~~~~~~~~L~~L~l~~~~~~~~l~-~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~f~~L~~L~l  434 (763)
                      +.++..+.+|+..-.  +..|++|+...|. ++.+| .++.+.+|..|++.+++... .+ +|.|      +..|++|+.
T Consensus       167 ~~~n~l~~l~~~~i~--m~~L~~ld~~~N~-L~tlP~~lg~l~~L~~LyL~~Nki~~-lP-ef~g------cs~L~Elh~  235 (565)
T KOG0472|consen  167 LEGNKLKALPENHIA--MKRLKHLDCNSNL-LETLPPELGGLESLELLYLRRNKIRF-LP-EFPG------CSLLKELHV  235 (565)
T ss_pred             ccccchhhCCHHHHH--HHHHHhcccchhh-hhcCChhhcchhhhHHHHhhhccccc-CC-CCCc------cHHHHHHHh
Confidence            334445555554433  6777777776663 55555 78888888888888754322 22 3322      445555555


Q ss_pred             cccchhhhcCCCCcCCcccEEEEecCcchhhcCCCCCcccEEEEecCCccccc----CCCccccceeccccchhhhhhcC
Q 039689          435 VDICSKLQGTLPERLLLLEKLNIFRCEQLLVTLQCLPALRELEIDGCKGVVLS----SPTDLSSLKLVHSRDMAKEVFEQ  510 (763)
Q Consensus       435 ~~~~~~l~~~~~~~~~~L~~L~l~~~~~l~~~l~~l~~L~~L~l~~~~~~~~~----~~~~L~~L~~~~~~~~~~~~~~~  510 (763)
                      ..  +.+. .+|                 ......++++..|++..|+....+    ...++..|++++......+...+
T Consensus       236 g~--N~i~-~lp-----------------ae~~~~L~~l~vLDLRdNklke~Pde~clLrsL~rLDlSNN~is~Lp~sLg  295 (565)
T KOG0472|consen  236 GE--NQIE-MLP-----------------AEHLKHLNSLLVLDLRDNKLKEVPDEICLLRSLERLDLSNNDISSLPYSLG  295 (565)
T ss_pred             cc--cHHH-hhH-----------------HHHhcccccceeeeccccccccCchHHHHhhhhhhhcccCCccccCCcccc
Confidence            54  1111 111                 112346889999999999876654    23334444444333332222234


Q ss_pred             CCCCCceEEEeccCCcccccccc-CcCCccccccCceeec-cCC------------------ch--hhhcceeeeccCCC
Q 039689          511 GLPKLERLEIQHVREQTYLWRSE-TRLPQDIRSLNRLQIS-RCP------------------QL--ISLLRTVKIEDCNA  568 (763)
Q Consensus       511 ~~~~L~~L~l~~~~~l~~l~~~~-~~~p~~l~~L~~L~l~-~~~------------------~l--~~~L~~L~l~~~~~  568 (763)
                      .+ .|+.|.+.+|+.-+.--... +.....+..|++=..+ +.+                  ..  ....+.|.+++ ..
T Consensus       296 nl-hL~~L~leGNPlrTiRr~ii~~gT~~vLKyLrs~~~~dglS~se~~~e~~~t~~~~~~~~~~~~i~tkiL~~s~-~q  373 (565)
T KOG0472|consen  296 NL-HLKFLALEGNPLRTIRREIISKGTQEVLKYLRSKIKDDGLSQSEGGTETAMTLPSESFPDIYAIITTKILDVSD-KQ  373 (565)
T ss_pred             cc-eeeehhhcCCchHHHHHHHHcccHHHHHHHHHHhhccCCCCCCcccccccCCCCCCcccchhhhhhhhhhcccc-cc
Confidence            44 55555555554322100000 0000000111100000 000                  00  00055555555 55


Q ss_pred             cccccchhhhcC-CCCcceEEEecCccccccCC-CCCCCCccEEEEccCCCCCCCchhhhcCCCCCcceEeeccCCCccc
Q 039689          569 LESLPEAWMHNS-NSSLESLKIRSCNSLVSFPD-FALPSQLRTVTIKGCDALESLPEAWMQNSSTSLESLAIDSCDSLTY  646 (763)
Q Consensus       569 l~~l~~~~~~~~-l~~L~~L~l~~c~~l~~~~~-~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~  646 (763)
                      ++.+|...+... -.-...++++.|. +.++|. ...+..+.+.-+.++..+..+|..+  ..+++|..|++++| -+.+
T Consensus       374 lt~VPdEVfea~~~~~Vt~VnfskNq-L~elPk~L~~lkelvT~l~lsnn~isfv~~~l--~~l~kLt~L~L~NN-~Ln~  449 (565)
T KOG0472|consen  374 LTLVPDEVFEAAKSEIVTSVNFSKNQ-LCELPKRLVELKELVTDLVLSNNKISFVPLEL--SQLQKLTFLDLSNN-LLND  449 (565)
T ss_pred             cccCCHHHHHHhhhcceEEEecccch-HhhhhhhhHHHHHHHHHHHhhcCccccchHHH--Hhhhcceeeecccc-hhhh
Confidence            555665533210 1124455555533 444443 2222223222222333566666655  67788888888876 5566


Q ss_pred             cccccCCCCCcEEEEecCCCCCCCccceEEecCCCCCccccCCCC---CCcCeEeeccCCCCccccCC-CCCCCCcCcee
Q 039689          647 IARIQLPPSLKRLIIFRCDNLRFNSLRKLKISGGCPDLVSSPRFP---ASLTELKISDMPSLERLSSI-GENLTSLKFLD  722 (763)
Q Consensus       647 l~~~~~~~~L~~L~l~~c~~l~~~~L~~L~l~~~~~~l~~~~~~~---~~L~~L~l~~~~~l~~ip~~-~~~l~~L~~L~  722 (763)
                      +|....               .+..||.++++.  +++..+|.+.   ..|+.+- .+.+.++.++.. +.++.+|.+||
T Consensus       450 LP~e~~---------------~lv~Lq~LnlS~--NrFr~lP~~~y~lq~lEtll-as~nqi~~vd~~~l~nm~nL~tLD  511 (565)
T KOG0472|consen  450 LPEEMG---------------SLVRLQTLNLSF--NRFRMLPECLYELQTLETLL-ASNNQIGSVDPSGLKNMRNLTTLD  511 (565)
T ss_pred             cchhhh---------------hhhhhheecccc--cccccchHHHhhHHHHHHHH-hccccccccChHHhhhhhhcceec
Confidence            664432               345678888875  6777777733   3444444 444899999876 69999999999


Q ss_pred             cccCCCCccccC-CCcccccceeeeccCh
Q 039689          723 LDNCPKLKYFSK-QGLPKSLLRLIIDECP  750 (763)
Q Consensus       723 l~~c~~L~~l~~-~~~~~~L~~L~i~~C~  750 (763)
                      +.+ +.++.+|+ .+..++|+.|.++|+|
T Consensus       512 L~n-Ndlq~IPp~LgnmtnL~hLeL~gNp  539 (565)
T KOG0472|consen  512 LQN-NDLQQIPPILGNMTNLRHLELDGNP  539 (565)
T ss_pred             cCC-CchhhCChhhccccceeEEEecCCc
Confidence            988 57888887 5777999999999997

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]

Probab=99.87  E-value=4.6e-24  Score=217.47  Aligned_cols=367  Identities=20%  Similarity=0.290  Sum_probs=218.6

Q ss_pred             CCCCcccEEEecCCCCC--ccCcccCCCCcccEEecCCCCchhcchhhhhcccccEEeeccccccccccccccCcccccc
Q 039689          194 LNLPRLRVFSLRGYNIF--ELPKAIENLKHLRFLDLSTTKIEILRESINTLYNLHTLLLEDCRRLKKLCKDMGNLTKLHH  271 (763)
Q Consensus       194 ~~l~~Lr~L~L~~~~i~--~lp~~~~~l~~L~~L~L~~~~i~~lp~~~~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~  271 (763)
                      +-++..|-.|+++|.++  .+|.+...|+.++.|.|..+.+..+|+.++.+.+|++|.+++ +.+..+..+++.|+.||.
T Consensus         4 gVLpFVrGvDfsgNDFsg~~FP~~v~qMt~~~WLkLnrt~L~~vPeEL~~lqkLEHLs~~H-N~L~~vhGELs~Lp~LRs   82 (1255)
T KOG0444|consen    4 GVLPFVRGVDFSGNDFSGDRFPHDVEQMTQMTWLKLNRTKLEQVPEELSRLQKLEHLSMAH-NQLISVHGELSDLPRLRS   82 (1255)
T ss_pred             cccceeecccccCCcCCCCcCchhHHHhhheeEEEechhhhhhChHHHHHHhhhhhhhhhh-hhhHhhhhhhccchhhHH
Confidence            45778888999999976  479999999999999999999999999999999999999999 678888788889999999


Q ss_pred             cccCCcccccccccCCCccCCCceeeecCcccccCcccchhhhhcCcccccceEEeeccCCCCCCccHHHHhhcCCCCCC
Q 039689          272 LNNSNVGSLEEMLMLKSLVHLQGTLEISRLENVKGVGDASEVQLNSKVNLKALYLQWGVRDAVEPKTETQVIDMLKPHQK  351 (763)
Q Consensus       272 L~l~~~~~l~~l~~l~~L~~L~~~L~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~l~~l~~  351 (763)
                      +.+..|. +..                                                                     
T Consensus        83 v~~R~N~-LKn---------------------------------------------------------------------   92 (1255)
T KOG0444|consen   83 VIVRDNN-LKN---------------------------------------------------------------------   92 (1255)
T ss_pred             Hhhhccc-ccc---------------------------------------------------------------------
Confidence            9888876 211                                                                     


Q ss_pred             ceEEEeeeCCCCCCCccCCCCCCCceEEEEeccCCCCCCC-CCCCCCCCCcceecccCCceEeCccccCCCcCCCCCCcc
Q 039689          352 LELTITGYGGTKFPIWLGDSLFSKLMLLKFDNCGTCTSLP-SVGQLPFLKDPVISGMGRVKIVGSEFYGSSCSVSFPSLE  430 (763)
Q Consensus       352 L~L~~~~~~~~~~p~~~~~~~~~~L~~L~l~~~~~~~~l~-~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~f~~L~  430 (763)
                                ..+|+.+..  +..|+.|+|++|.. ...| .+....++..|+++++. ++.++...+     ..+..|-
T Consensus        93 ----------sGiP~diF~--l~dLt~lDLShNqL-~EvP~~LE~AKn~iVLNLS~N~-IetIPn~lf-----inLtDLL  153 (1255)
T KOG0444|consen   93 ----------SGIPTDIFR--LKDLTILDLSHNQL-REVPTNLEYAKNSIVLNLSYNN-IETIPNSLF-----INLTDLL  153 (1255)
T ss_pred             ----------CCCCchhcc--cccceeeecchhhh-hhcchhhhhhcCcEEEEcccCc-cccCCchHH-----HhhHhHh
Confidence                      012222222  34444455554432 2222 34444444455555422 222221110     0011122


Q ss_pred             eeeccccchhhhcCCCCcCCcccEEEEecCcchhhcCCCCCcccEEEEecCCcccccCCCccccceeccccchhhhhhcC
Q 039689          431 TLFFVDICSKLQGTLPERLLLLEKLNIFRCEQLLVTLQCLPALRELEIDGCKGVVLSSPTDLSSLKLVHSRDMAKEVFEQ  510 (763)
Q Consensus       431 ~L~l~~~~~~l~~~~~~~~~~L~~L~l~~~~~l~~~l~~l~~L~~L~l~~~~~~~~~~~~~L~~L~~~~~~~~~~~~~~~  510 (763)
                      .|++++  +.+. .+|                  ..+..+.+|++|.+++|+...+.                  -....
T Consensus       154 fLDLS~--NrLe-~LP------------------PQ~RRL~~LqtL~Ls~NPL~hfQ------------------LrQLP  194 (1255)
T KOG0444|consen  154 FLDLSN--NRLE-MLP------------------PQIRRLSMLQTLKLSNNPLNHFQ------------------LRQLP  194 (1255)
T ss_pred             hhcccc--chhh-hcC------------------HHHHHHhhhhhhhcCCChhhHHH------------------HhcCc
Confidence            222222  2222 111                  12334555666666666533211                  00012


Q ss_pred             CCCCCceEEEeccCCccccccccCcCC---ccccccCceeeccCCchhhhcceeeeccCCCcccccchhhhcCCCCcceE
Q 039689          511 GLPKLERLEIQHVREQTYLWRSETRLP---QDIRSLNRLQISRCPQLISLLRTVKIEDCNALESLPEAWMHNSNSSLESL  587 (763)
Q Consensus       511 ~~~~L~~L~l~~~~~l~~l~~~~~~~p---~~l~~L~~L~l~~~~~l~~~L~~L~l~~~~~l~~l~~~~~~~~l~~L~~L  587 (763)
                      .+++|+.|.+++.....      ..+|   ..+.+|..+++               +. |.+..+|++...  +++|+.|
T Consensus       195 smtsL~vLhms~TqRTl------~N~Ptsld~l~NL~dvDl---------------S~-N~Lp~vPecly~--l~~LrrL  250 (1255)
T KOG0444|consen  195 SMTSLSVLHMSNTQRTL------DNIPTSLDDLHNLRDVDL---------------SE-NNLPIVPECLYK--LRNLRRL  250 (1255)
T ss_pred             cchhhhhhhcccccchh------hcCCCchhhhhhhhhccc---------------cc-cCCCcchHHHhh--hhhhhee
Confidence            23344444444433211      1334   23334444444               43 778888888655  8899999


Q ss_pred             EEecCccccccCC-CCCCCCccEEEEccCCCCCCCchhhhcCCCCCcceEeeccCCCccccccccCCCCCcEEEEecCCC
Q 039689          588 KIRSCNSLVSFPD-FALPSQLRTVTIKGCDALESLPEAWMQNSSTSLESLAIDSCDSLTYIARIQLPPSLKRLIIFRCDN  666 (763)
Q Consensus       588 ~l~~c~~l~~~~~-~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~L~~L~l~~c~~  666 (763)
                      ++++|. ++.+.. ...-.+|++|+++.| .++.+|..+  ..++.|+.|.+.+| +++   ...+|+-+-         
T Consensus       251 NLS~N~-iteL~~~~~~W~~lEtLNlSrN-QLt~LP~av--cKL~kL~kLy~n~N-kL~---FeGiPSGIG---------  313 (1255)
T KOG0444|consen  251 NLSGNK-ITELNMTEGEWENLETLNLSRN-QLTVLPDAV--CKLTKLTKLYANNN-KLT---FEGIPSGIG---------  313 (1255)
T ss_pred             ccCcCc-eeeeeccHHHHhhhhhhccccc-hhccchHHH--hhhHHHHHHHhccC-ccc---ccCCccchh---------
Confidence            998855 455443 233468899999997 788899888  78899999988877 332   223333222         


Q ss_pred             CCCCccceEEecCCCCCccccCC---CCCCcCeEeeccCCCCccccCCCCCCCCcCceecccCCCCccccC
Q 039689          667 LRFNSLRKLKISGGCPDLVSSPR---FPASLTELKISDMPSLERLSSIGENLTSLKFLDLDNCPKLKYFSK  734 (763)
Q Consensus       667 l~~~~L~~L~l~~~~~~l~~~~~---~~~~L~~L~l~~~~~l~~ip~~~~~l~~L~~L~l~~c~~L~~l~~  734 (763)
                       ++.+|+.+...+  +.++-.|+   .+..|+.|.+++ +.+-.+|..+.-++.|+.||+..+|+|.--|.
T Consensus       314 -KL~~Levf~aan--N~LElVPEglcRC~kL~kL~L~~-NrLiTLPeaIHlL~~l~vLDlreNpnLVMPPK  380 (1255)
T KOG0444|consen  314 -KLIQLEVFHAAN--NKLELVPEGLCRCVKLQKLKLDH-NRLITLPEAIHLLPDLKVLDLRENPNLVMPPK  380 (1255)
T ss_pred             -hhhhhHHHHhhc--cccccCchhhhhhHHHHHhcccc-cceeechhhhhhcCCcceeeccCCcCccCCCC
Confidence             234555555543  55555555   345677777766 66777777777777777777777777664443

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]

Probab=99.83  E-value=5e-23  Score=220.02  Aligned_cols=450  Identities=24%  Similarity=0.247  Sum_probs=267.4

Q ss_pred             hhhccCCCCcccEEEecCCCCCccC-cccCCCCcccEEecCCCCchhcchhhhhcccccEEeeccccccccccccccCcc
Q 039689          189 VLQRLLNLPRLRVFSLRGYNIFELP-KAIENLKHLRFLDLSTTKIEILRESINTLYNLHTLLLEDCRRLKKLCKDMGNLT  267 (763)
Q Consensus       189 ~~~~~~~l~~Lr~L~L~~~~i~~lp-~~~~~l~~L~~L~L~~~~i~~lp~~~~~L~~L~~L~L~~~~~l~~lp~~i~~L~  267 (763)
                      +|..+.....+..|++..|.+-..| +.+.+..+|+.||+++|.+...|..+..+.+|+.|+++. +.++.+|.+++++.
T Consensus        13 ip~~i~~~~~~~~ln~~~N~~l~~pl~~~~~~v~L~~l~lsnn~~~~fp~~it~l~~L~~ln~s~-n~i~~vp~s~~~~~   91 (1081)
T KOG0618|consen   13 IPEQILNNEALQILNLRRNSLLSRPLEFVEKRVKLKSLDLSNNQISSFPIQITLLSHLRQLNLSR-NYIRSVPSSCSNMR   91 (1081)
T ss_pred             cchhhccHHHHHhhhccccccccCchHHhhheeeeEEeeccccccccCCchhhhHHHHhhcccch-hhHhhCchhhhhhh
Confidence            4455544455888888888877766 444566679999999999999999999999999999998 78999999999999


Q ss_pred             cccccccCCcccccccccCCCccCCCceeeecCcccccCcccchhhhhcCcccccceEEeeccCCCCCCccHHHHhhcCC
Q 039689          268 KLHHLNNSNVGSLEEMLMLKSLVHLQGTLEISRLENVKGVGDASEVQLNSKVNLKALYLQWGVRDAVEPKTETQVIDMLK  347 (763)
Q Consensus       268 ~L~~L~l~~~~~l~~l~~l~~L~~L~~~L~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~l~  347 (763)
                      +|++|.|.+|. ++.+|                            +.+..+.+|+.|++++|..                
T Consensus        92 ~l~~lnL~~n~-l~~lP----------------------------~~~~~lknl~~LdlS~N~f----------------  126 (1081)
T KOG0618|consen   92 NLQYLNLKNNR-LQSLP----------------------------ASISELKNLQYLDLSFNHF----------------  126 (1081)
T ss_pred             cchhheeccch-hhcCc----------------------------hhHHhhhcccccccchhcc----------------
Confidence            99999999887 55444                            3444455666666655522                


Q ss_pred             CCCCceEEEeeeCCCCCCCccCCCCCCCceEEEEeccCCCCCCCCCCCCCCCCcceecccCCceEeCccccCCCcCCCCC
Q 039689          348 PHQKLELTITGYGGTKFPIWLGDSLFSKLMLLKFDNCGTCTSLPSVGQLPFLKDPVISGMGRVKIVGSEFYGSSCSVSFP  427 (763)
Q Consensus       348 ~l~~L~L~~~~~~~~~~p~~~~~~~~~~L~~L~l~~~~~~~~l~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~f~  427 (763)
                                    ..+|..+..  +..++.+..++|.....++   ... ++.+++..+.....+..+         ..
T Consensus       127 --------------~~~Pl~i~~--lt~~~~~~~s~N~~~~~lg---~~~-ik~~~l~~n~l~~~~~~~---------i~  177 (1081)
T KOG0618|consen  127 --------------GPIPLVIEV--LTAEEELAASNNEKIQRLG---QTS-IKKLDLRLNVLGGSFLID---------IY  177 (1081)
T ss_pred             --------------CCCchhHHh--hhHHHHHhhhcchhhhhhc---ccc-chhhhhhhhhcccchhcc---------hh
Confidence                          223332222  3344444444442222222   111 333333332221111111         12


Q ss_pred             Ccce-eeccccchhhhcCCCCcCCcccEEEEecCcchhhcCCCCCcccEEEEecCCcccc---cCCCccccceeccccch
Q 039689          428 SLET-LFFVDICSKLQGTLPERLLLLEKLNIFRCEQLLVTLQCLPALRELEIDGCKGVVL---SSPTDLSSLKLVHSRDM  503 (763)
Q Consensus       428 ~L~~-L~l~~~~~~l~~~~~~~~~~L~~L~l~~~~~l~~~l~~l~~L~~L~l~~~~~~~~---~~~~~L~~L~~~~~~~~  503 (763)
                      +++. |++.++  .+....-..+++|+.|....+. +...--.-++|+.|+.++|.....   +.+.+++.+.++.....
T Consensus       178 ~l~~~ldLr~N--~~~~~dls~~~~l~~l~c~rn~-ls~l~~~g~~l~~L~a~~n~l~~~~~~p~p~nl~~~dis~n~l~  254 (1081)
T KOG0618|consen  178 NLTHQLDLRYN--EMEVLDLSNLANLEVLHCERNQ-LSELEISGPSLTALYADHNPLTTLDVHPVPLNLQYLDISHNNLS  254 (1081)
T ss_pred             hhheeeecccc--hhhhhhhhhccchhhhhhhhcc-cceEEecCcchheeeeccCcceeeccccccccceeeecchhhhh
Confidence            2332 455442  1111111123333333333222 222223456777888877766542   23444555544444333


Q ss_pred             hhhhhcCCCCCCceEEEeccCCccccccccCcCCccc---cccCceeeccCCchhhhcceeeeccCCCcccccchhhhcC
Q 039689          504 AKEVFEQGLPKLERLEIQHVREQTYLWRSETRLPQDI---RSLNRLQISRCPQLISLLRTVKIEDCNALESLPEAWMHNS  580 (763)
Q Consensus       504 ~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~p~~l---~~L~~L~l~~~~~l~~~L~~L~l~~~~~l~~l~~~~~~~~  580 (763)
                      ..+.+...+++|+.+.+.+|...        .+|..+   ++|+.|.+..                +.++.+|+...  .
T Consensus       255 ~lp~wi~~~~nle~l~~n~N~l~--------~lp~ri~~~~~L~~l~~~~----------------nel~yip~~le--~  308 (1081)
T KOG0618|consen  255 NLPEWIGACANLEALNANHNRLV--------ALPLRISRITSLVSLSAAY----------------NELEYIPPFLE--G  308 (1081)
T ss_pred             cchHHHHhcccceEecccchhHH--------hhHHHHhhhhhHHHHHhhh----------------hhhhhCCCccc--c
Confidence            22244455566666665555432        333222   2333333322                55666665422  2


Q ss_pred             CCCcceEEEecCccccccCC--CCCC-CCccEEEEccCCCCCCCchhhhcCCCCCcceEeeccCCCccc--cccccCCCC
Q 039689          581 NSSLESLKIRSCNSLVSFPD--FALP-SQLRTVTIKGCDALESLPEAWMQNSSTSLESLAIDSCDSLTY--IARIQLPPS  655 (763)
Q Consensus       581 l~~L~~L~l~~c~~l~~~~~--~~~~-~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~--l~~~~~~~~  655 (763)
                      +.+|+.|++..| .+.++|.  +..+ .+|+.|..+.+ .+...|.. .....+.|+.|++.+| .+++  +|.......
T Consensus       309 ~~sL~tLdL~~N-~L~~lp~~~l~v~~~~l~~ln~s~n-~l~~lp~~-~e~~~~~Lq~LylanN-~Ltd~c~p~l~~~~h  384 (1081)
T KOG0618|consen  309 LKSLRTLDLQSN-NLPSLPDNFLAVLNASLNTLNVSSN-KLSTLPSY-EENNHAALQELYLANN-HLTDSCFPVLVNFKH  384 (1081)
T ss_pred             cceeeeeeehhc-cccccchHHHhhhhHHHHHHhhhhc-cccccccc-cchhhHHHHHHHHhcC-cccccchhhhccccc
Confidence            566777777553 3566665  1222 23555666555 34444421 1145677888888877 4432  444444568


Q ss_pred             CcEEEEecCCC--C------CCCccceEEecCCCCCccccCC---CCCCcCeEeeccCCCCccccCCCCCCCCcCceecc
Q 039689          656 LKRLIIFRCDN--L------RFNSLRKLKISGGCPDLVSSPR---FPASLTELKISDMPSLERLSSIGENLTSLKFLDLD  724 (763)
Q Consensus       656 L~~L~l~~c~~--l------~~~~L~~L~l~~~~~~l~~~~~---~~~~L~~L~l~~~~~l~~ip~~~~~l~~L~~L~l~  724 (763)
                      |+.|+++++.-  .      ++..|++|++||  ++++.+|.   .+..|++|...+ |.+..+| .+..++.|+.+|++
T Consensus       385 LKVLhLsyNrL~~fpas~~~kle~LeeL~LSG--NkL~~Lp~tva~~~~L~tL~ahs-N~l~~fP-e~~~l~qL~~lDlS  460 (1081)
T KOG0618|consen  385 LKVLHLSYNRLNSFPASKLRKLEELEELNLSG--NKLTTLPDTVANLGRLHTLRAHS-NQLLSFP-ELAQLPQLKVLDLS  460 (1081)
T ss_pred             eeeeeecccccccCCHHHHhchHHhHHHhccc--chhhhhhHHHHhhhhhHHHhhcC-Cceeech-hhhhcCcceEEecc
Confidence            88888887632  1      667889999998  88999887   567888888877 7899999 88999999999997


Q ss_pred             cCCCCccccC-CCcc-cccceeeeccChh
Q 039689          725 NCPKLKYFSK-QGLP-KSLLRLIIDECPL  751 (763)
Q Consensus       725 ~c~~L~~l~~-~~~~-~~L~~L~i~~C~~  751 (763)
                      . ++|..+-. ...| ++|+.|+++|+++
T Consensus       461 ~-N~L~~~~l~~~~p~p~LkyLdlSGN~~  488 (1081)
T KOG0618|consen  461 C-NNLSEVTLPEALPSPNLKYLDLSGNTR  488 (1081)
T ss_pred             c-chhhhhhhhhhCCCcccceeeccCCcc
Confidence            4 68887654 3566 8999999999974

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]

Probab=99.80  E-value=7.5e-22  Score=201.49  Aligned_cols=341  Identities=20%  Similarity=0.255  Sum_probs=171.6

Q ss_pred             hhhccCCCCcccEEEecCCCCCccCcccCCCCcccEEecCCCCchhcchhhhhcccccEEeecccccc--ccccccccCc
Q 039689          189 VLQRLLNLPRLRVFSLRGYNIFELPKAIENLKHLRFLDLSTTKIEILRESINTLYNLHTLLLEDCRRL--KKLCKDMGNL  266 (763)
Q Consensus       189 ~~~~~~~l~~Lr~L~L~~~~i~~lp~~~~~l~~L~~L~L~~~~i~~lp~~~~~L~~L~~L~L~~~~~l--~~lp~~i~~L  266 (763)
                      .|.+...+..++.|.|...++..+|+.++.+.+|+.|.+++|++.++-..++.|+.||.+++++| ++  ..+|++|-.|
T Consensus        24 FP~~v~qMt~~~WLkLnrt~L~~vPeEL~~lqkLEHLs~~HN~L~~vhGELs~Lp~LRsv~~R~N-~LKnsGiP~diF~l  102 (1255)
T KOG0444|consen   24 FPHDVEQMTQMTWLKLNRTKLEQVPEELSRLQKLEHLSMAHNQLISVHGELSDLPRLRSVIVRDN-NLKNSGIPTDIFRL  102 (1255)
T ss_pred             CchhHHHhhheeEEEechhhhhhChHHHHHHhhhhhhhhhhhhhHhhhhhhccchhhHHHhhhcc-ccccCCCCchhccc
Confidence            34444555666666666666666666666666666666666666666556666666666666653 33  2356666666


Q ss_pred             ccccccccCCcccccccccCCCccCCCceeeecCcccccCcccchhhhhcCcccccceEEeeccCCCCCCccHHHHhhcC
Q 039689          267 TKLHHLNNSNVGSLEEMLMLKSLVHLQGTLEISRLENVKGVGDASEVQLNSKVNLKALYLQWGVRDAVEPKTETQVIDML  346 (763)
Q Consensus       267 ~~L~~L~l~~~~~l~~l~~l~~L~~L~~~L~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~l  346 (763)
                      ..|..||+++|. +++.|.     +|                       ..-+++-.|++++|.+.+.....       +
T Consensus       103 ~dLt~lDLShNq-L~EvP~-----~L-----------------------E~AKn~iVLNLS~N~IetIPn~l-------f  146 (1255)
T KOG0444|consen  103 KDLTILDLSHNQ-LREVPT-----NL-----------------------EYAKNSIVLNLSYNNIETIPNSL-------F  146 (1255)
T ss_pred             ccceeeecchhh-hhhcch-----hh-----------------------hhhcCcEEEEcccCccccCCchH-------H
Confidence            666666666665 555543     00                       00112222333333221111000       0


Q ss_pred             CCCCCc-eEEEeeeCCCCCCCccCCCCCCCceEEEEeccCCC-CCCCCCCCCCCCCcceecccCCceEeCccccCCCcCC
Q 039689          347 KPHQKL-ELTITGYGGTKFPIWLGDSLFSKLMLLKFDNCGTC-TSLPSVGQLPFLKDPVISGMGRVKIVGSEFYGSSCSV  424 (763)
Q Consensus       347 ~~l~~L-~L~~~~~~~~~~p~~~~~~~~~~L~~L~l~~~~~~-~~l~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~  424 (763)
                      -++..| .|+++.+....+|+.+..  +..|+.|.|++|+.. ..+..+..+++|+.|.+++...               
T Consensus       147 inLtDLLfLDLS~NrLe~LPPQ~RR--L~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqR---------------  209 (1255)
T KOG0444|consen  147 INLTDLLFLDLSNNRLEMLPPQIRR--LSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQR---------------  209 (1255)
T ss_pred             HhhHhHhhhccccchhhhcCHHHHH--HhhhhhhhcCCChhhHHHHhcCccchhhhhhhcccccc---------------
Confidence            011111 233333344445554444  455555555555421 1111222233333444333211               


Q ss_pred             CCCCcceeeccccchhhhcCCC---CcCCcccEEEEecCc--chhhcCCCCCcccEEEEecCCccccc----CCCccccc
Q 039689          425 SFPSLETLFFVDICSKLQGTLP---ERLLLLEKLNIFRCE--QLLVTLQCLPALRELEIDGCKGVVLS----SPTDLSSL  495 (763)
Q Consensus       425 ~f~~L~~L~l~~~~~~l~~~~~---~~~~~L~~L~l~~~~--~l~~~l~~l~~L~~L~l~~~~~~~~~----~~~~L~~L  495 (763)
                                      -...+|   +.+.+|..++++.+.  .++..+..+++|+.|++++|....+.    ....+++|
T Consensus       210 ----------------Tl~N~Ptsld~l~NL~dvDlS~N~Lp~vPecly~l~~LrrLNLS~N~iteL~~~~~~W~~lEtL  273 (1255)
T KOG0444|consen  210 ----------------TLDNIPTSLDDLHNLRDVDLSENNLPIVPECLYKLRNLRRLNLSGNKITELNMTEGEWENLETL  273 (1255)
T ss_pred             ----------------hhhcCCCchhhhhhhhhccccccCCCcchHHHhhhhhhheeccCcCceeeeeccHHHHhhhhhh
Confidence                            111233   234455555555432  34445556777777777777655432    23444444


Q ss_pred             eeccccchhhhhhcCCCCCCceEEEeccCCccccccccCcCCccccccCceeeccCCchhhhcceeeeccCCCcccccch
Q 039689          496 KLVHSRDMAKEVFEQGLPKLERLEIQHVREQTYLWRSETRLPQDIRSLNRLQISRCPQLISLLRTVKIEDCNALESLPEA  575 (763)
Q Consensus       496 ~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~p~~l~~L~~L~l~~~~~l~~~L~~L~l~~~~~l~~l~~~  575 (763)
                      .++...-...+...-.+++|++|.+.+|...-      ..+|..+.+|..|.            ++...+ |+++-+|++
T Consensus       274 NlSrNQLt~LP~avcKL~kL~kLy~n~NkL~F------eGiPSGIGKL~~Le------------vf~aan-N~LElVPEg  334 (1255)
T KOG0444|consen  274 NLSRNQLTVLPDAVCKLTKLTKLYANNNKLTF------EGIPSGIGKLIQLE------------VFHAAN-NKLELVPEG  334 (1255)
T ss_pred             ccccchhccchHHHhhhHHHHHHHhccCcccc------cCCccchhhhhhhH------------HHHhhc-cccccCchh
Confidence            44444333333444566777777766664321      25665544444322            222222 677777777


Q ss_pred             hhhcCCCCcceEEEecCccccccCC-CCCCCCccEEEEccCCCCCCC
Q 039689          576 WMHNSNSSLESLKIRSCNSLVSFPD-FALPSQLRTVTIKGCDALESL  621 (763)
Q Consensus       576 ~~~~~l~~L~~L~l~~c~~l~~~~~-~~~~~~L~~L~l~~~~~l~~~  621 (763)
                      +..  |+.|+.|.+ +|+.+..+|. +..++.|+.||+..|+.+---
T Consensus       335 lcR--C~kL~kL~L-~~NrLiTLPeaIHlL~~l~vLDlreNpnLVMP  378 (1255)
T KOG0444|consen  335 LCR--CVKLQKLKL-DHNRLITLPEAIHLLPDLKVLDLRENPNLVMP  378 (1255)
T ss_pred             hhh--hHHHHHhcc-cccceeechhhhhhcCCcceeeccCCcCccCC
Confidence            544  677777777 4455666665 556677777888777766433

>PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals []

Probab=99.74  E-value=4.8e-19  Score=181.50  Aligned_cols=122  Identities=33%  Similarity=0.613  Sum_probs=100.4

Q ss_pred             ChHHHHhhhhcCCCCCCCcchHHHHHHHHHHHcCCChHHHHHHHHHhcCCCChHHHHHHHhhhcccccC---CccChHHH
Q 039689            1 MHWECYQKMTVCVCSLNMHQSLKEVGQKIAMKCKGLPLAAKTLGGLLRGKDDPKDWENVLKTEVWDLAD---DKCDIIPA   77 (763)
Q Consensus         1 ~~~~lf~~~af~~~~~~~~~~~~~~~~~i~~~c~GlPlal~~~g~~L~~~~~~~~W~~~l~~~~~~~~~---~~~~i~~~   77 (763)
                      +||+||++.|+... ....+.+.+++++|+++|+|+||||+++|+.|+.+.+..+|+.+++++......   ....++.+
T Consensus       161 ea~~L~~~~~~~~~-~~~~~~~~~~~~~i~~~c~glPLal~~~a~~l~~~~~~~~w~~~~~~l~~~~~~~~~~~~~~~~~  239 (287)
T PF00931_consen  161 EALELFKKRAGRKE-SESPEDLEDLAKEIVEKCGGLPLALKLIASYLRSKSTVDEWEEALEELENSLRESRDYDRSVFSA  239 (287)
T ss_dssp             HHHHHHHHHHTSHS-----TTSCTHHHHHHHHTTT-HHHHHHHHHHHHHHHSSSSHHHHHHHHHHCHTCSSGSCHHHHHH
T ss_pred             cccccccccccccc-ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            58999999998765 234456778999999999999999999999997765678999999876554432   24679999


Q ss_pred             HHHHHhcCCHhHHHHhhhhcccCCCCccCHHHHHHHHHHcCCcccC
Q 039689           78 LRVSYHFLPPQLKQCFAYCSLFPKDHEFQKEQIILLWAAEGFLHQE  123 (763)
Q Consensus        78 l~~Sy~~L~~~~k~~fl~~~~fp~~~~i~~~~li~~w~~~g~~~~~  123 (763)
                      +.+||+.|+++.|.||+|||+||+++.|+++.++++|+++|+++..
T Consensus       240 l~~s~~~L~~~~~~~f~~L~~f~~~~~i~~~~li~lW~~e~~i~~~  285 (287)
T PF00931_consen  240 LELSYDSLPDELRRCFLYLSIFPEGVPIPRERLIRLWVAEGFISSK  285 (287)
T ss_dssp             HHHHHHSSHTCCHHHHHHGGGSGTTS-EEHHHHHHHHTT-HHTC--
T ss_pred             ceechhcCCccHHHHHhhCcCCCCCceECHHHHHHHHHHCCCCccc
Confidence            9999999999999999999999999999999999999999999764

This domain has been structurally characterised in the human protein apoptotic protease-activating factor 1 (Apaf-1) []. It contains the three-layered alpha-beta fold and subsequent short alpha-helical region characteristic of the AAA+ ATPase domain superfamily. While this domain is thought to bind and hyrolyse ATP, only ADP binding has been experimentally verified. It is proposed that binding and hydrolysis of ATP by this domain induces conformational changes the the overall protein, leading to formation of the apoptosome.; GO: 0043531 ADP binding; PDB: 3IZA_E 1Z6T_D 3SFZ_A 3SHF_A 1VT4_M 3IZ8_G 3LQR_A 2A5Y_C 3LQQ_A.

>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]

Probab=99.63  E-value=6.7e-18  Score=164.28  Aligned_cols=268  Identities=19%  Similarity=0.172  Sum_probs=148.1

Q ss_pred             cccEEEecCCCCCccC-cccCCCCcccEEecCCCCchhc-chhhhhcccccEEeecccccccccccc-ccCccccccccc
Q 039689          198 RLRVFSLRGYNIFELP-KAIENLKHLRFLDLSTTKIEIL-RESINTLYNLHTLLLEDCRRLKKLCKD-MGNLTKLHHLNN  274 (763)
Q Consensus       198 ~Lr~L~L~~~~i~~lp-~~~~~l~~L~~L~L~~~~i~~l-p~~~~~L~~L~~L~L~~~~~l~~lp~~-i~~L~~L~~L~l  274 (763)
                      .-..++|..|.|+.+| .+|+.+++||.||||+|.|+.+ |.+|..|.+|..|-+.+++++..+|.. |++|..|+.|.+
T Consensus        68 ~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slqrLll  147 (498)
T KOG4237|consen   68 ETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQRLLL  147 (498)
T ss_pred             cceEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHHHHhc
Confidence            4466789999999996 7899999999999999999987 899999999999988888899999987 899999999998


Q ss_pred             CCccccccccc--CCCccCCCceeeecCcccccCcccchhhhhcCcccccceEEeeccCCCCC-CccHHHHhh----cCC
Q 039689          275 SNVGSLEEMLM--LKSLVHLQGTLEISRLENVKGVGDASEVQLNSKVNLKALYLQWGVRDAVE-PKTETQVID----MLK  347 (763)
Q Consensus       275 ~~~~~l~~l~~--l~~L~~L~~~L~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~-~~~~~~~l~----~l~  347 (763)
                      .-|. +..++.  +..|..+. .|.+.+    +.+..+....+..+..++.+.+..|...... -....+...    ..+
T Consensus       148 Nan~-i~Cir~~al~dL~~l~-lLslyD----n~~q~i~~~tf~~l~~i~tlhlA~np~icdCnL~wla~~~a~~~iets  221 (498)
T KOG4237|consen  148 NANH-INCIRQDALRDLPSLS-LLSLYD----NKIQSICKGTFQGLAAIKTLHLAQNPFICDCNLPWLADDLAMNPIETS  221 (498)
T ss_pred             Chhh-hcchhHHHHHHhhhcc-hhcccc----hhhhhhccccccchhccchHhhhcCccccccccchhhhHHhhchhhcc
Confidence            8776 444333  33333333 222222    1222333345666667777766544311100 000000000    000


Q ss_pred             CCCC-----c-eEEEeeeCCCCCCCccCCCCCCCceEEEEeccCCCCCCC--CCCCCCCCCcceecccCCceEeCccccC
Q 039689          348 PHQK-----L-ELTITGYGGTKFPIWLGDSLFSKLMLLKFDNCGTCTSLP--SVGQLPFLKDPVISGMGRVKIVGSEFYG  419 (763)
Q Consensus       348 ~l~~-----L-~L~~~~~~~~~~p~~~~~~~~~~L~~L~l~~~~~~~~l~--~l~~l~~L~~L~l~~~~~l~~~~~~~~~  419 (763)
                      ....     + .-.+.......+-.     +...+..-..+.|.....-|  .|..+++|+.|+++++....+....|.|
T Consensus       222 garc~~p~rl~~~Ri~q~~a~kf~c-----~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~~i~~~aFe~  296 (498)
T KOG4237|consen  222 GARCVSPYRLYYKRINQEDARKFLC-----SLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKITRIEDGAFEG  296 (498)
T ss_pred             cceecchHHHHHHHhcccchhhhhh-----hHHhHHHhhccccCcCCcChHHHHhhcccceEeccCCCccchhhhhhhcc
Confidence            0000     0 00000000000000     00111111112222222223  4778888888888887666665555555


Q ss_pred             CCcCCCCCCcceeecccc-chhhhcCCCCcCCcccEEEEecCcc---hhhcCCCCCcccEEEEecCC
Q 039689          420 SSCSVSFPSLETLFFVDI-CSKLQGTLPERLLLLEKLNIFRCEQ---LLVTLQCLPALRELEIDGCK  482 (763)
Q Consensus       420 ~~~~~~f~~L~~L~l~~~-~~~l~~~~~~~~~~L~~L~l~~~~~---l~~~l~~l~~L~~L~l~~~~  482 (763)
                            ...++.|.+..+ ...+.+-+...+..|+.|++.++..   .+.+|..+.+|.+|.+-+|+
T Consensus       297 ------~a~l~eL~L~~N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~~~l~~l~l~~Np  357 (498)
T KOG4237|consen  297 ------AAELQELYLTRNKLEFVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQTLFSLSTLNLLSNP  357 (498)
T ss_pred             ------hhhhhhhhcCcchHHHHHHHhhhccccceeeeecCCeeEEEecccccccceeeeeehccCc
Confidence                  566777777662 1112223334455666666666542   22345556666666665553

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=99.63  E-value=2.7e-15  Score=166.84  Aligned_cols=78  Identities=18%  Similarity=0.158  Sum_probs=63.7

Q ss_pred             CcccEEEecCCCCCccCcccCCCCcccEEecCCCCchhcchhhhhcccccEEeeccccccccccccccCcccccccccCC
Q 039689          197 PRLRVFSLRGYNIFELPKAIENLKHLRFLDLSTTKIEILRESINTLYNLHTLLLEDCRRLKKLCKDMGNLTKLHHLNNSN  276 (763)
Q Consensus       197 ~~Lr~L~L~~~~i~~lp~~~~~l~~L~~L~L~~~~i~~lp~~~~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l~~  276 (763)
                      ..-..|+++++.++.+|..+.  .+|+.|++++|.++.+|.   .+++|++|++++ +.+..+|..   .++|+.|++++
T Consensus       201 ~~~~~LdLs~~~LtsLP~~l~--~~L~~L~L~~N~Lt~LP~---lp~~Lk~LdLs~-N~LtsLP~l---p~sL~~L~Ls~  271 (788)
T PRK15387        201 NGNAVLNVGESGLTTLPDCLP--AHITTLVIPDNNLTSLPA---LPPELRTLEVSG-NQLTSLPVL---PPGLLELSIFS  271 (788)
T ss_pred             CCCcEEEcCCCCCCcCCcchh--cCCCEEEccCCcCCCCCC---CCCCCcEEEecC-CccCcccCc---ccccceeeccC
Confidence            557789999999999998776  489999999999999985   358999999999 578888863   46888889888


Q ss_pred             cccccccc
Q 039689          277 VGSLEEML  284 (763)
Q Consensus       277 ~~~l~~l~  284 (763)
                      |. +..+|
T Consensus       272 N~-L~~Lp  278 (788)
T PRK15387        272 NP-LTHLP  278 (788)
T ss_pred             Cc-hhhhh
Confidence            86 54443

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=99.62  E-value=4.5e-15  Score=165.10  Aligned_cols=252  Identities=29%  Similarity=0.353  Sum_probs=149.2

Q ss_pred             eEEEeeeCCCCCCCccCCCCCCCceEEEEeccCCCCCCCCCCCCCCCCcceecccCCceEeCccccCCCcCCCCCCccee
Q 039689          353 ELTITGYGGTKFPIWLGDSLFSKLMLLKFDNCGTCTSLPSVGQLPFLKDPVISGMGRVKIVGSEFYGSSCSVSFPSLETL  432 (763)
Q Consensus       353 ~L~~~~~~~~~~p~~~~~~~~~~L~~L~l~~~~~~~~l~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~f~~L~~L  432 (763)
                      .|++..+....+|..+    .++++.|++.+|. +..+|.+  .++|++|++++|. +.                     
T Consensus       205 ~LdLs~~~LtsLP~~l----~~~L~~L~L~~N~-Lt~LP~l--p~~Lk~LdLs~N~-Lt---------------------  255 (788)
T PRK15387        205 VLNVGESGLTTLPDCL----PAHITTLVIPDNN-LTSLPAL--PPELRTLEVSGNQ-LT---------------------  255 (788)
T ss_pred             EEEcCCCCCCcCCcch----hcCCCEEEccCCc-CCCCCCC--CCCCcEEEecCCc-cC---------------------
Confidence            4455555666677655    3467788887764 3445532  3566666666542 21                     


Q ss_pred             eccccchhhhcCCCCcCCcccEEEEecCcchhhcCCCCCcccEEEEecCCcccccCCCccccceeccccchhhhhhcCCC
Q 039689          433 FFVDICSKLQGTLPERLLLLEKLNIFRCEQLLVTLQCLPALRELEIDGCKGVVLSSPTDLSSLKLVHSRDMAKEVFEQGL  512 (763)
Q Consensus       433 ~l~~~~~~l~~~~~~~~~~L~~L~l~~~~~l~~~l~~l~~L~~L~l~~~~~~~~~~~~~L~~L~~~~~~~~~~~~~~~~~  512 (763)
                                 .+|...++|+.|++.+|. +.......++|+.|++++|....++                      ..+
T Consensus       256 -----------sLP~lp~sL~~L~Ls~N~-L~~Lp~lp~~L~~L~Ls~N~Lt~LP----------------------~~p  301 (788)
T PRK15387        256 -----------SLPVLPPGLLELSIFSNP-LTHLPALPSGLCKLWIFGNQLTSLP----------------------VLP  301 (788)
T ss_pred             -----------cccCcccccceeeccCCc-hhhhhhchhhcCEEECcCCcccccc----------------------ccc
Confidence                       122223445555554443 1111112345666777666433221                      124


Q ss_pred             CCCceEEEeccCCccccccccCcCCccccccCceeeccCCchhhhcceeeeccCCCcccccchhhhcCCCCcceEEEecC
Q 039689          513 PKLERLEIQHVREQTYLWRSETRLPQDIRSLNRLQISRCPQLISLLRTVKIEDCNALESLPEAWMHNSNSSLESLKIRSC  592 (763)
Q Consensus       513 ~~L~~L~l~~~~~l~~l~~~~~~~p~~l~~L~~L~l~~~~~l~~~L~~L~l~~~~~l~~l~~~~~~~~l~~L~~L~l~~c  592 (763)
                      ++|+.|++++|...        .+|....+|+.|++++                +.++.+|..     ..+|+.|++++|
T Consensus       302 ~~L~~LdLS~N~L~--------~Lp~lp~~L~~L~Ls~----------------N~L~~LP~l-----p~~Lq~LdLS~N  352 (788)
T PRK15387        302 PGLQELSVSDNQLA--------SLPALPSELCKLWAYN----------------NQLTSLPTL-----PSGLQELSVSDN  352 (788)
T ss_pred             cccceeECCCCccc--------cCCCCccccccccccc----------------Ccccccccc-----ccccceEecCCC
Confidence            56777777776432        3343333444444443                556666642     357888888764


Q ss_pred             ccccccCCCCCCCCccEEEEccCCCCCCCchhhhcCCCCCcceEeeccCCCccccccccCCCCCcEEEEecCCCCCCCcc
Q 039689          593 NSLVSFPDFALPSQLRTVTIKGCDALESLPEAWMQNSSTSLESLAIDSCDSLTYIARIQLPPSLKRLIIFRCDNLRFNSL  672 (763)
Q Consensus       593 ~~l~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~L~~L~l~~c~~l~~~~L  672 (763)
                       .++.+|.  .+++|+.|++++| .+..+|..     ..+|+.|++++| .++.+|..  +                .+|
T Consensus       353 -~Ls~LP~--lp~~L~~L~Ls~N-~L~~LP~l-----~~~L~~LdLs~N-~Lt~LP~l--~----------------s~L  404 (788)
T PRK15387        353 -QLASLPT--LPSELYKLWAYNN-RLTSLPAL-----PSGLKELIVSGN-RLTSLPVL--P----------------SEL  404 (788)
T ss_pred             -ccCCCCC--CCcccceehhhcc-ccccCccc-----ccccceEEecCC-cccCCCCc--c----------------cCC
Confidence             4566764  3567888888876 45666642     356888888877 56555421  2                245


Q ss_pred             ceEEecCCCCCccccCCCCCCcCeEeeccCCCCccccCCCCCCCCcCceecccCC
Q 039689          673 RKLKISGGCPDLVSSPRFPASLTELKISDMPSLERLSSIGENLTSLKFLDLDNCP  727 (763)
Q Consensus       673 ~~L~l~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~ip~~~~~l~~L~~L~l~~c~  727 (763)
                      +.|++++  +.+..+|..+.+|+.|++++ +.++.+|..+.++++|+.|++++|+
T Consensus       405 ~~LdLS~--N~LssIP~l~~~L~~L~Ls~-NqLt~LP~sl~~L~~L~~LdLs~N~  456 (788)
T PRK15387        405 KELMVSG--NRLTSLPMLPSGLLSLSVYR-NQLTRLPESLIHLSSETTVNLEGNP  456 (788)
T ss_pred             CEEEccC--CcCCCCCcchhhhhhhhhcc-CcccccChHHhhccCCCeEECCCCC
Confidence            5556654  45666666667888888888 6788899888888999999998875

>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]

Probab=99.39  E-value=1.8e-14  Score=140.65  Aligned_cols=260  Identities=18%  Similarity=0.218  Sum_probs=153.9

Q ss_pred             cchhhhhhccCCCCcccEEEecCCCCCcc-CcccCCCCcccEEecCC-CCchhcch-hhhhcccccEEeecccccccccc
Q 039689          184 ERRQNVLQRLLNLPRLRVFSLRGYNIFEL-PKAIENLKHLRFLDLST-TKIEILRE-SINTLYNLHTLLLEDCRRLKKLC  260 (763)
Q Consensus       184 ~~~~~~~~~~~~l~~Lr~L~L~~~~i~~l-p~~~~~l~~L~~L~L~~-~~i~~lp~-~~~~L~~L~~L~L~~~~~l~~lp  260 (763)
                      .+++.-+.+|+.+++||.|||++|.|+.| |+.|.++..|..|-+.+ |+|+.+|. .|++|..|+.|.+.- +.+..++
T Consensus        78 ~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slqrLllNa-n~i~Cir  156 (498)
T KOG4237|consen   78 QISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQRLLLNA-NHINCIR  156 (498)
T ss_pred             CcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHHHHhcCh-hhhcchh
Confidence            34454566789999999999999999998 89999999998888877 89999985 579999999999988 4666665


Q ss_pred             cc-ccCcccccccccCCccccccccc--CCCccCCCceeeec--------CcccccCcccchhhhhcCcccccceEEeec
Q 039689          261 KD-MGNLTKLHHLNNSNVGSLEEMLM--LKSLVHLQGTLEIS--------RLENVKGVGDASEVQLNSKVNLKALYLQWG  329 (763)
Q Consensus       261 ~~-i~~L~~L~~L~l~~~~~l~~l~~--l~~L~~L~~~L~~~--------~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~  329 (763)
                      .. +..|++|..|.+.+|. ++.++.  +..+..++ .+...        ++.............++..+......+.+.
T Consensus       157 ~~al~dL~~l~lLslyDn~-~q~i~~~tf~~l~~i~-tlhlA~np~icdCnL~wla~~~a~~~ietsgarc~~p~rl~~~  234 (498)
T KOG4237|consen  157 QDALRDLPSLSLLSLYDNK-IQSICKGTFQGLAAIK-TLHLAQNPFICDCNLPWLADDLAMNPIETSGARCVSPYRLYYK  234 (498)
T ss_pred             HHHHHHhhhcchhcccchh-hhhhccccccchhccc-hHhhhcCccccccccchhhhHHhhchhhcccceecchHHHHHH
Confidence            54 8999999999999987 666665  33333333 11111        111111111111222333333222222222


Q ss_pred             cCCCCCCccHHHHhhcCCCCCCceEEEeeeCCCCCCC-ccCCCCCCCceEEEEeccCCCCCCC-CCCCCCCCCcceeccc
Q 039689          330 VRDAVEPKTETQVIDMLKPHQKLELTITGYGGTKFPI-WLGDSLFSKLMLLKFDNCGTCTSLP-SVGQLPFLKDPVISGM  407 (763)
Q Consensus       330 ~~~~~~~~~~~~~l~~l~~l~~L~L~~~~~~~~~~p~-~~~~~~~~~L~~L~l~~~~~~~~l~-~l~~l~~L~~L~l~~~  407 (763)
                      ..............+.+..    .+.-..+.....|. .+..  +++|+.|++++|.....-+ +|..+..++.|.+..+
T Consensus       235 Ri~q~~a~kf~c~~esl~s----~~~~~d~~d~~cP~~cf~~--L~~L~~lnlsnN~i~~i~~~aFe~~a~l~eL~L~~N  308 (498)
T KOG4237|consen  235 RINQEDARKFLCSLESLPS----RLSSEDFPDSICPAKCFKK--LPNLRKLNLSNNKITRIEDGAFEGAAELQELYLTRN  308 (498)
T ss_pred             HhcccchhhhhhhHHhHHH----hhccccCcCCcChHHHHhh--cccceEeccCCCccchhhhhhhcchhhhhhhhcCcc
Confidence            2111111111111111110    11111111111111 1222  7888888888886544333 7888888888888886


Q ss_pred             CCceEeCccccCCCcCCCCCCcceeeccccchhhhcCCCCcCC---cccEEEEecC
Q 039689          408 GRVKIVGSEFYGSSCSVSFPSLETLFFVDICSKLQGTLPERLL---LLEKLNIFRC  460 (763)
Q Consensus       408 ~~l~~~~~~~~~~~~~~~f~~L~~L~l~~~~~~l~~~~~~~~~---~L~~L~l~~~  460 (763)
                      ..-......|.|      +..|+.|++.+  ++++...|..|.   .|..|.+..+
T Consensus       309 ~l~~v~~~~f~~------ls~L~tL~L~~--N~it~~~~~aF~~~~~l~~l~l~~N  356 (498)
T KOG4237|consen  309 KLEFVSSGMFQG------LSGLKTLSLYD--NQITTVAPGAFQTLFSLSTLNLLSN  356 (498)
T ss_pred             hHHHHHHHhhhc------cccceeeeecC--CeeEEEecccccccceeeeeehccC
Confidence            544443444433      77888888887  566655665554   4555566543

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]

Probab=99.38  E-value=1.8e-14  Score=124.26  Aligned_cols=153  Identities=28%  Similarity=0.394  Sum_probs=118.8

Q ss_pred             CCCCcccEEEecCCCCCccCcccCCCCcccEEecCCCCchhcchhhhhcccccEEeeccccccccccccccCcccccccc
Q 039689          194 LNLPRLRVFSLRGYNIFELPKAIENLKHLRFLDLSTTKIEILRESINTLYNLHTLLLEDCRRLKKLCKDMGNLTKLHHLN  273 (763)
Q Consensus       194 ~~l~~Lr~L~L~~~~i~~lp~~~~~l~~L~~L~L~~~~i~~lp~~~~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~  273 (763)
                      -.+.++..|.|++|+++.+|..|..+.+|++|++++|+|+++|.+++.|++|++|+++- +.+..+|.+|+.++.|+.||
T Consensus        30 f~~s~ITrLtLSHNKl~~vppnia~l~nlevln~~nnqie~lp~~issl~klr~lnvgm-nrl~~lprgfgs~p~levld  108 (264)
T KOG0617|consen   30 FNMSNITRLTLSHNKLTVVPPNIAELKNLEVLNLSNNQIEELPTSISSLPKLRILNVGM-NRLNILPRGFGSFPALEVLD  108 (264)
T ss_pred             cchhhhhhhhcccCceeecCCcHHHhhhhhhhhcccchhhhcChhhhhchhhhheecch-hhhhcCccccCCCchhhhhh
Confidence            45677888999999999999999999999999999999999999999999999999998 78999999999999999999


Q ss_pred             cCCcccccccccCCCccCCCceeeecCcccccCcccchhhhhcCcccccceEEeeccCCCCCCccHHHHhhcCCCCCCce
Q 039689          274 NSNVGSLEEMLMLKSLVHLQGTLEISRLENVKGVGDASEVQLNSKVNLKALYLQWGVRDAVEPKTETQVIDMLKPHQKLE  353 (763)
Q Consensus       274 l~~~~~l~~l~~l~~L~~L~~~L~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~l~~l~~L~  353 (763)
                      +++|. +.+                          ...+..|..+..|+.|++..|                        
T Consensus       109 ltynn-l~e--------------------------~~lpgnff~m~tlralyl~dn------------------------  137 (264)
T KOG0617|consen  109 LTYNN-LNE--------------------------NSLPGNFFYMTTLRALYLGDN------------------------  137 (264)
T ss_pred             ccccc-ccc--------------------------ccCCcchhHHHHHHHHHhcCC------------------------
Confidence            99987 321                          111223444555666655433                        


Q ss_pred             EEEeeeCCCCCCCccCCCCCCCceEEEEeccCCCCCCC-CCCCCCCCCcceeccc
Q 039689          354 LTITGYGGTKFPIWLGDSLFSKLMLLKFDNCGTCTSLP-SVGQLPFLKDPVISGM  407 (763)
Q Consensus       354 L~~~~~~~~~~p~~~~~~~~~~L~~L~l~~~~~~~~l~-~l~~l~~L~~L~l~~~  407 (763)
                            ....+|..++.  +.+|+.|.+.+|..+ .+| .++.+..|+.|.|.++
T Consensus       138 ------dfe~lp~dvg~--lt~lqil~lrdndll-~lpkeig~lt~lrelhiqgn  183 (264)
T KOG0617|consen  138 ------DFEILPPDVGK--LTNLQILSLRDNDLL-SLPKEIGDLTRLRELHIQGN  183 (264)
T ss_pred             ------CcccCChhhhh--hcceeEEeeccCchh-hCcHHHHHHHHHHHHhcccc
Confidence                  33445666666  777888888777654 344 6777777777777764

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=99.35  E-value=2.9e-12  Score=143.99  Aligned_cols=80  Identities=16%  Similarity=0.259  Sum_probs=66.2

Q ss_pred             CcccEEEecCCCCCccCcccCCCCcccEEecCCCCchhcchhhhhcccccEEeeccccccccccccccCcccccccccCC
Q 039689          197 PRLRVFSLRGYNIFELPKAIENLKHLRFLDLSTTKIEILRESINTLYNLHTLLLEDCRRLKKLCKDMGNLTKLHHLNNSN  276 (763)
Q Consensus       197 ~~Lr~L~L~~~~i~~lp~~~~~l~~L~~L~L~~~~i~~lp~~~~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l~~  276 (763)
                      .+...|+++++.++.+|..+.  .+|+.|+|++|.++.+|..+.  .+|++|++++ +.+..+|..+.  .+|+.|++++
T Consensus       178 ~~~~~L~L~~~~LtsLP~~Ip--~~L~~L~Ls~N~LtsLP~~l~--~nL~~L~Ls~-N~LtsLP~~l~--~~L~~L~Ls~  250 (754)
T PRK15370        178 NNKTELRLKILGLTTIPACIP--EQITTLILDNNELKSLPENLQ--GNIKTLYANS-NQLTSIPATLP--DTIQEMELSI  250 (754)
T ss_pred             cCceEEEeCCCCcCcCCcccc--cCCcEEEecCCCCCcCChhhc--cCCCEEECCC-CccccCChhhh--ccccEEECcC
Confidence            467899999999999998764  689999999999999998775  5999999998 57888887654  4799999999


Q ss_pred             cccccccc
Q 039689          277 VGSLEEML  284 (763)
Q Consensus       277 ~~~l~~l~  284 (763)
                      |. +..+|
T Consensus       251 N~-L~~LP  257 (754)
T PRK15370        251 NR-ITELP  257 (754)
T ss_pred             Cc-cCcCC
Confidence            87 54443

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=99.32  E-value=7.6e-12  Score=140.58  Aligned_cols=157  Identities=24%  Similarity=0.429  Sum_probs=93.5

Q ss_pred             cceeeeccCCCcccccchhhhcCCCCcceEEEecCccccccCCCCCCCCccEEEEccCCCCCCCchhhhcCCCCCcceEe
Q 039689          558 LRTVKIEDCNALESLPEAWMHNSNSSLESLKIRSCNSLVSFPDFALPSQLRTVTIKGCDALESLPEAWMQNSSTSLESLA  637 (763)
Q Consensus       558 L~~L~l~~~~~l~~l~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~  637 (763)
                      |+.|++++ |.++.+|..+    .++|+.|++++| .++.+|. ..+++|+.|++++| .++.+|..+    .++|+.|+
T Consensus       264 L~~L~Ls~-N~L~~LP~~l----~~sL~~L~Ls~N-~Lt~LP~-~lp~sL~~L~Ls~N-~Lt~LP~~l----~~sL~~L~  331 (754)
T PRK15370        264 LQSLDLFH-NKISCLPENL----PEELRYLSVYDN-SIRTLPA-HLPSGITHLNVQSN-SLTALPETL----PPGLKTLE  331 (754)
T ss_pred             CCEEECcC-CccCcccccc----CCCCcEEECCCC-ccccCcc-cchhhHHHHHhcCC-ccccCCccc----cccceecc
Confidence            44455543 5666776642    357788888765 3566664 23356777888776 455666533    36777788


Q ss_pred             eccCCCccccccccCCCCCcEEEEecCCCCCCCccceEEecCCCCCccccCC-CCCCcCeEeeccCCCCccccCCCCCCC
Q 039689          638 IDSCDSLTYIARIQLPPSLKRLIIFRCDNLRFNSLRKLKISGGCPDLVSSPR-FPASLTELKISDMPSLERLSSIGENLT  716 (763)
Q Consensus       638 l~~c~~l~~l~~~~~~~~L~~L~l~~c~~l~~~~L~~L~l~~~~~~l~~~~~-~~~~L~~L~l~~~~~l~~ip~~~~~l~  716 (763)
                      +++| .++.+|. .++++|+.|++++|                  .+..+|. .+++|++|++++ +.++.+|..+.  .
T Consensus       332 Ls~N-~Lt~LP~-~l~~sL~~L~Ls~N------------------~L~~LP~~lp~~L~~LdLs~-N~Lt~LP~~l~--~  388 (754)
T PRK15370        332 AGEN-ALTSLPA-SLPPELQVLDVSKN------------------QITVLPETLPPTITTLDVSR-NALTNLPENLP--A  388 (754)
T ss_pred             ccCC-ccccCCh-hhcCcccEEECCCC------------------CCCcCChhhcCCcCEEECCC-CcCCCCCHhHH--H
Confidence            8777 5665553 23344555444433                  3444443 446777888877 46667775432  3


Q ss_pred             CcCceecccCCCCccccCC-----CcccccceeeeccCh
Q 039689          717 SLKFLDLDNCPKLKYFSKQ-----GLPKSLLRLIIDECP  750 (763)
Q Consensus       717 ~L~~L~l~~c~~L~~l~~~-----~~~~~L~~L~i~~C~  750 (763)
                      +|+.|++++| ++..+|..     +..+++..|++.++|
T Consensus       389 sL~~LdLs~N-~L~~LP~sl~~~~~~~~~l~~L~L~~Np  426 (754)
T PRK15370        389 ALQIMQASRN-NLVRLPESLPHFRGEGPQPTRIIVEYNP  426 (754)
T ss_pred             HHHHHhhccC-CcccCchhHHHHhhcCCCccEEEeeCCC
Confidence            5777777774 56666541     112456777777776

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]

Probab=99.24  E-value=1.6e-13  Score=118.51  Aligned_cols=104  Identities=26%  Similarity=0.324  Sum_probs=92.2

Q ss_pred             hhhccCCCCcccEEEecCCCCCccCcccCCCCcccEEecCCCCchhcchhhhhcccccEEeecccccc-ccccccccCcc
Q 039689          189 VLQRLLNLPRLRVFSLRGYNIFELPKAIENLKHLRFLDLSTTKIEILRESINTLYNLHTLLLEDCRRL-KKLCKDMGNLT  267 (763)
Q Consensus       189 ~~~~~~~l~~Lr~L~L~~~~i~~lp~~~~~l~~L~~L~L~~~~i~~lp~~~~~L~~L~~L~L~~~~~l-~~lp~~i~~L~  267 (763)
                      +|+.+..+.+|.+|++.+|+|+++|.+++.+++||.|+++-|++..+|..||.++.|++|||++|+.- ..+|..|-.|+
T Consensus        48 vppnia~l~nlevln~~nnqie~lp~~issl~klr~lnvgmnrl~~lprgfgs~p~levldltynnl~e~~lpgnff~m~  127 (264)
T KOG0617|consen   48 VPPNIAELKNLEVLNLSNNQIEELPTSISSLPKLRILNVGMNRLNILPRGFGSFPALEVLDLTYNNLNENSLPGNFFYMT  127 (264)
T ss_pred             cCCcHHHhhhhhhhhcccchhhhcChhhhhchhhhheecchhhhhcCccccCCCchhhhhhccccccccccCCcchhHHH
Confidence            67788999999999999999999999999999999999999999999999999999999999995432 45788899999


Q ss_pred             cccccccCCccccccccc-CCCccCCC
Q 039689          268 KLHHLNNSNVGSLEEMLM-LKSLVHLQ  293 (763)
Q Consensus       268 ~L~~L~l~~~~~l~~l~~-l~~L~~L~  293 (763)
                      .|+.|++++|. ++.+|. .++|++|+
T Consensus       128 tlralyl~dnd-fe~lp~dvg~lt~lq  153 (264)
T KOG0617|consen  128 TLRALYLGDND-FEILPPDVGKLTNLQ  153 (264)
T ss_pred             HHHHHHhcCCC-cccCChhhhhhccee
Confidence            99999999998 776654 66666665

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]

Probab=99.23  E-value=4.8e-12  Score=144.47  Aligned_cols=86  Identities=36%  Similarity=0.465  Sum_probs=79.1

Q ss_pred             cCCCCcccEEEecCCC-CCccCcccCCCCcccEEecCCCCchhcchhhhhcccccEEeeccccccccccccccCcccccc
Q 039689          193 LLNLPRLRVFSLRGYN-IFELPKAIENLKHLRFLDLSTTKIEILRESINTLYNLHTLLLEDCRRLKKLCKDMGNLTKLHH  271 (763)
Q Consensus       193 ~~~l~~Lr~L~L~~~~-i~~lp~~~~~l~~L~~L~L~~~~i~~lp~~~~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~  271 (763)
                      |..++.||+|||++|. +.++|++|+.|.+||||+|+++.|+.+|.++++|+.|.+||+.++..+..+|..+..|.+||+
T Consensus       567 f~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~I~~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~  646 (889)
T KOG4658|consen  567 FRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTGISHLPSGLGNLKKLIYLNLEVTGRLESIPGILLELQSLRV  646 (889)
T ss_pred             HhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccCCCccccchHHHHHHhhheeccccccccccccchhhhcccccE
Confidence            6889999999999887 789999999999999999999999999999999999999999998777777776777999999


Q ss_pred             cccCCcc
Q 039689          272 LNNSNVG  278 (763)
Q Consensus       272 L~l~~~~  278 (763)
                      |.+....
T Consensus       647 L~l~~s~  653 (889)
T KOG4658|consen  647 LRLPRSA  653 (889)
T ss_pred             EEeeccc
Confidence            9987654

>KOG4341 consensus F-box protein containing LRR [General function prediction only]

Probab=98.88  E-value=3.6e-11  Score=118.99  Aligned_cols=212  Identities=17%  Similarity=0.264  Sum_probs=107.5

Q ss_pred             cCCCCCCceEEEeccCCccccccccCcCCccccccCceeeccCCchhhh-----------cceeeeccCCCcccccchhh
Q 039689          509 EQGLPKLERLEIQHVREQTYLWRSETRLPQDIRSLNRLQISRCPQLISL-----------LRTVKIEDCNALESLPEAWM  577 (763)
Q Consensus       509 ~~~~~~L~~L~l~~~~~l~~l~~~~~~~p~~l~~L~~L~l~~~~~l~~~-----------L~~L~l~~~~~l~~l~~~~~  577 (763)
                      ...+++|+++.+++|+....  .+...+......++.+..++|.....-           +.++++.+|+.++...-..+
T Consensus       212 a~gC~kL~~lNlSwc~qi~~--~gv~~~~rG~~~l~~~~~kGC~e~~le~l~~~~~~~~~i~~lnl~~c~~lTD~~~~~i  289 (483)
T KOG4341|consen  212 AEGCRKLKYLNLSWCPQISG--NGVQALQRGCKELEKLSLKGCLELELEALLKAAAYCLEILKLNLQHCNQLTDEDLWLI  289 (483)
T ss_pred             HHhhhhHHHhhhccCchhhc--CcchHHhccchhhhhhhhcccccccHHHHHHHhccChHhhccchhhhccccchHHHHH
Confidence            36688888888888886652  111112234445666666666544321           45555666766665543333


Q ss_pred             hcCCCCcceEEEecCccccccCC---CCCCCCccEEEEccCCCCCCCchhhhcCCCCCcceEeeccCCCccccccc---c
Q 039689          578 HNSNSSLESLKIRSCNSLVSFPD---FALPSQLRTVTIKGCDALESLPEAWMQNSSTSLESLAIDSCDSLTYIARI---Q  651 (763)
Q Consensus       578 ~~~l~~L~~L~l~~c~~l~~~~~---~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~---~  651 (763)
                      ...+..|+.|+.++|..+++.+-   ....++|+.+.+++|..++...-.....+++.|+.+++..|..+..-...   .
T Consensus       290 ~~~c~~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls~  369 (483)
T KOG4341|consen  290 ACGCHALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGTLASLSR  369 (483)
T ss_pred             hhhhhHhhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhhhHhhhcc
Confidence            33456677777777766554432   23446777777777766655544444456667777777766444322110   1


Q ss_pred             CCCCCcEEEEecCCCCCCCccceEEecCCCCCccccCCCCCCcCeEeeccCCCCccccCC-CCCCCCcCceecccCCCCc
Q 039689          652 LPPSLKRLIIFRCDNLRFNSLRKLKISGGCPDLVSSPRFPASLTELKISDMPSLERLSSI-GENLTSLKFLDLDNCPKLK  730 (763)
Q Consensus       652 ~~~~L~~L~l~~c~~l~~~~L~~L~l~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~ip~~-~~~l~~L~~L~l~~c~~L~  730 (763)
                      -.+.|+.|.++.|..+.-...+.+.-+         ......|+.+.+++|+.+++---. ...+++|+.+++.+|....
T Consensus       370 ~C~~lr~lslshce~itD~gi~~l~~~---------~c~~~~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l~~~q~vt  440 (483)
T KOG4341|consen  370 NCPRLRVLSLSHCELITDEGIRHLSSS---------SCSLEGLEVLELDNCPLITDATLEHLSICRNLERIELIDCQDVT  440 (483)
T ss_pred             CCchhccCChhhhhhhhhhhhhhhhhc---------cccccccceeeecCCCCchHHHHHHHhhCcccceeeeechhhhh
Confidence            122333333333332211111111111         013345555666666555443221 2445566666666665444


Q ss_pred             c
Q 039689          731 Y  731 (763)
Q Consensus       731 ~  731 (763)
                      .
T Consensus       441 k  441 (483)
T KOG4341|consen  441 K  441 (483)
T ss_pred             h
Confidence            3

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=98.86  E-value=7.6e-10  Score=115.53  Aligned_cols=83  Identities=27%  Similarity=0.269  Sum_probs=43.4

Q ss_pred             CCcccEEEecCCCCC-----ccCcccCCCCcccEEecCCCCchh-------cchhhhhcccccEEeeccccccccccccc
Q 039689          196 LPRLRVFSLRGYNIF-----ELPKAIENLKHLRFLDLSTTKIEI-------LRESINTLYNLHTLLLEDCRRLKKLCKDM  263 (763)
Q Consensus       196 l~~Lr~L~L~~~~i~-----~lp~~~~~l~~L~~L~L~~~~i~~-------lp~~~~~L~~L~~L~L~~~~~l~~lp~~i  263 (763)
                      +..|++|+++++.++     .++..+...+.|++|+++++.+..       ++..+..+++|+.|++++|......+..+
T Consensus        22 l~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~  101 (319)
T cd00116          22 LLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNALGPDGCGVL  101 (319)
T ss_pred             HhhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcCceeEEEccCCCCChhHHHHH
Confidence            344666666666652     234444555556666666654441       23445556666666666644333333334


Q ss_pred             cCccc---ccccccCCcc
Q 039689          264 GNLTK---LHHLNNSNVG  278 (763)
Q Consensus       264 ~~L~~---L~~L~l~~~~  278 (763)
                      ..+.+   |++|++++|.
T Consensus       102 ~~l~~~~~L~~L~ls~~~  119 (319)
T cd00116         102 ESLLRSSSLQELKLNNNG  119 (319)
T ss_pred             HHHhccCcccEEEeeCCc
Confidence            44433   6666666654

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=98.78  E-value=2.7e-09  Score=97.40  Aligned_cols=86  Identities=31%  Similarity=0.456  Sum_probs=27.2

Q ss_pred             CCCCcccEEEecCCCCCccCcccC-CCCcccEEecCCCCchhcchhhhhcccccEEeeccccccccccccc-cCcccccc
Q 039689          194 LNLPRLRVFSLRGYNIFELPKAIE-NLKHLRFLDLSTTKIEILRESINTLYNLHTLLLEDCRRLKKLCKDM-GNLTKLHH  271 (763)
Q Consensus       194 ~~l~~Lr~L~L~~~~i~~lp~~~~-~l~~L~~L~L~~~~i~~lp~~~~~L~~L~~L~L~~~~~l~~lp~~i-~~L~~L~~  271 (763)
                      .+..++|.|+|++|.|+.+. .++ .+.+|+.|+|++|.|+.++ .+..+++|++|++++ +.+..+++.+ ..+++|++
T Consensus        16 ~n~~~~~~L~L~~n~I~~Ie-~L~~~l~~L~~L~Ls~N~I~~l~-~l~~L~~L~~L~L~~-N~I~~i~~~l~~~lp~L~~   92 (175)
T PF14580_consen   16 NNPVKLRELNLRGNQISTIE-NLGATLDKLEVLDLSNNQITKLE-GLPGLPRLKTLDLSN-NRISSISEGLDKNLPNLQE   92 (175)
T ss_dssp             ---------------------S--TT-TT--EEE-TTS--S--T-T----TT--EEE--S-S---S-CHHHHHH-TT--E
T ss_pred             cccccccccccccccccccc-chhhhhcCCCEEECCCCCCcccc-CccChhhhhhcccCC-CCCCccccchHHhCCcCCE
Confidence            34456788888888887773 354 5788888888888888874 577788888888888 6777776555 35788888


Q ss_pred             cccCCccccccc
Q 039689          272 LNNSNVGSLEEM  283 (763)
Q Consensus       272 L~l~~~~~l~~l  283 (763)
                      |++++|. +..+
T Consensus        93 L~L~~N~-I~~l  103 (175)
T PF14580_consen   93 LYLSNNK-ISDL  103 (175)
T ss_dssp             EE-TTS----SC
T ss_pred             EECcCCc-CCCh
Confidence            8888886 4443

>KOG4341 consensus F-box protein containing LRR [General function prediction only]

Probab=98.76  E-value=1e-10  Score=115.82  Aligned_cols=276  Identities=18%  Similarity=0.284  Sum_probs=147.3

Q ss_pred             CCCcceecccCCceEeCccccCCCcCCCCCCcceeeccccchhhhcC----CCCcCCcccEEEEecCcchhh-----cCC
Q 039689          398 FLKDPVISGMGRVKIVGSEFYGSSCSVSFPSLETLFFVDICSKLQGT----LPERLLLLEKLNIFRCEQLLV-----TLQ  468 (763)
Q Consensus       398 ~L~~L~l~~~~~l~~~~~~~~~~~~~~~f~~L~~L~l~~~~~~l~~~----~~~~~~~L~~L~l~~~~~l~~-----~l~  468 (763)
                      .|+.|.+.++.........-+    ....|+++.|.+.+ |.+++..    +...+++|++|.+..|..+..     ...
T Consensus       139 ~lk~LSlrG~r~v~~sslrt~----~~~CpnIehL~l~g-c~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~  213 (483)
T KOG4341|consen  139 FLKELSLRGCRAVGDSSLRTF----ASNCPNIEHLALYG-CKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAE  213 (483)
T ss_pred             ccccccccccccCCcchhhHH----hhhCCchhhhhhhc-ceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHH
Confidence            467777777655443221100    12356677776666 4443321    223566777777777765433     223


Q ss_pred             CCCcccEEEEecCCcccccCCCccccceeccccchhhhhhcCCCCCCceEEEeccCCccccccccCcCCccccccCceee
Q 039689          469 CLPALRELEIDGCKGVVLSSPTDLSSLKLVHSRDMAKEVFEQGLPKLERLEIQHVREQTYLWRSETRLPQDIRSLNRLQI  548 (763)
Q Consensus       469 ~l~~L~~L~l~~~~~~~~~~~~~L~~L~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~p~~l~~L~~L~l  548 (763)
                      .+++|++|+++.|+.+.....                .....+...++++...+|..++.-...  .......-+.++++
T Consensus       214 gC~kL~~lNlSwc~qi~~~gv----------------~~~~rG~~~l~~~~~kGC~e~~le~l~--~~~~~~~~i~~lnl  275 (483)
T KOG4341|consen  214 GCRKLKYLNLSWCPQISGNGV----------------QALQRGCKELEKLSLKGCLELELEALL--KAAAYCLEILKLNL  275 (483)
T ss_pred             hhhhHHHhhhccCchhhcCcc----------------hHHhccchhhhhhhhcccccccHHHHH--HHhccChHhhccch
Confidence            466777777776665442111                111244455666666666544311000  01122233455555


Q ss_pred             ccCCchhhh-----------cceeeeccCCCcccccchhhhcCCCCcceEEEecCccccccCC---CCCCCCccEEEEcc
Q 039689          549 SRCPQLISL-----------LRTVKIEDCNALESLPEAWMHNSNSSLESLKIRSCNSLVSFPD---FALPSQLRTVTIKG  614 (763)
Q Consensus       549 ~~~~~l~~~-----------L~~L~l~~~~~l~~l~~~~~~~~l~~L~~L~l~~c~~l~~~~~---~~~~~~L~~L~l~~  614 (763)
                      ..|..+++.           |+.|..++|..++..+-....+..++|+.|.++.|..++....   ....+.|+.+++.+
T Consensus       276 ~~c~~lTD~~~~~i~~~c~~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~  355 (483)
T KOG4341|consen  276 QHCNQLTDEDLWLIACGCHALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEE  355 (483)
T ss_pred             hhhccccchHHHHHhhhhhHhhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccc
Confidence            566544432           6777777777766655444445577788888887776554321   24456777777777


Q ss_pred             CCCCCCCchhhhcCCCCCcceEeeccCCCccccccccC------CCCCcEEEEecCCCCCCCccceEEecCCCCCccccC
Q 039689          615 CDALESLPEAWMQNSSTSLESLAIDSCDSLTYIARIQL------PPSLKRLIIFRCDNLRFNSLRKLKISGGCPDLVSSP  688 (763)
Q Consensus       615 ~~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~------~~~L~~L~l~~c~~l~~~~L~~L~l~~~~~~l~~~~  688 (763)
                      |.....-.-.-...+++.|+.+.+++|..+++.....+      ...++.+.+.+|+.+.-..|++|..   |       
T Consensus       356 ~~~~~d~tL~sls~~C~~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~~---c-------  425 (483)
T KOG4341|consen  356 CGLITDGTLASLSRNCPRLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDATLEHLSI---C-------  425 (483)
T ss_pred             cceehhhhHhhhccCCchhccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHHHHHHHhh---C-------
Confidence            74433221111225677788888887766655421111      2345555666666554444454443   2       


Q ss_pred             CCCCCcCeEeeccCCCCcccc
Q 039689          689 RFPASLTELKISDMPSLERLS  709 (763)
Q Consensus       689 ~~~~~L~~L~l~~~~~l~~ip  709 (763)
                         ++|+.+++..|...+.-+
T Consensus       426 ---~~Leri~l~~~q~vtk~~  443 (483)
T KOG4341|consen  426 ---RNLERIELIDCQDVTKEA  443 (483)
T ss_pred             ---cccceeeeechhhhhhhh
Confidence               366667777776665543

>PRK15386 type III secretion protein GogB; Provisional

Probab=98.73  E-value=5e-08  Score=100.00  Aligned_cols=160  Identities=26%  Similarity=0.425  Sum_probs=88.5

Q ss_pred             cceeeeccCCCcccccchhhhcCCCCcceEEEecCccccccCCCCCCCCccEEEEccCCCCCCCchhhhcCCCCCcceEe
Q 039689          558 LRTVKIEDCNALESLPEAWMHNSNSSLESLKIRSCNSLVSFPDFALPSQLRTVTIKGCDALESLPEAWMQNSSTSLESLA  637 (763)
Q Consensus       558 L~~L~l~~~~~l~~l~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~  637 (763)
                      ++.|++++| .++.+|.-     .++|++|.+++|..++.+|+ ..+++|+.|++++|..+..+|.        +|+.|+
T Consensus        54 l~~L~Is~c-~L~sLP~L-----P~sLtsL~Lsnc~nLtsLP~-~LP~nLe~L~Ls~Cs~L~sLP~--------sLe~L~  118 (426)
T PRK15386         54 SGRLYIKDC-DIESLPVL-----PNELTEITIENCNNLTTLPG-SIPEGLEKLTVCHCPEISGLPE--------SVRSLE  118 (426)
T ss_pred             CCEEEeCCC-CCcccCCC-----CCCCcEEEccCCCCcccCCc-hhhhhhhheEccCccccccccc--------ccceEE
Confidence            556666665 56666621     45677777777777777665 2356777777777766655543        355555


Q ss_pred             eccCCCccccccccCCCCCcEEEEecCCCCCCCccceEEecCCCCCccccCC-CCCCcCeEeeccCCCCccccCCCCCCC
Q 039689          638 IDSCDSLTYIARIQLPPSLKRLIIFRCDNLRFNSLRKLKISGGCPDLVSSPR-FPASLTELKISDMPSLERLSSIGENLT  716 (763)
Q Consensus       638 l~~c~~l~~l~~~~~~~~L~~L~l~~c~~l~~~~L~~L~l~~~~~~l~~~~~-~~~~L~~L~l~~~~~l~~ip~~~~~l~  716 (763)
                      +..+ ....+  ..+|++|+.|.+.++..               .....+|. .|++|++|.+++|..+ .+|..+  ..
T Consensus       119 L~~n-~~~~L--~~LPssLk~L~I~~~n~---------------~~~~~lp~~LPsSLk~L~Is~c~~i-~LP~~L--P~  177 (426)
T PRK15386        119 IKGS-ATDSI--KNVPNGLTSLSINSYNP---------------ENQARIDNLISPSLKTLSLTGCSNI-ILPEKL--PE  177 (426)
T ss_pred             eCCC-CCccc--ccCcchHhheecccccc---------------ccccccccccCCcccEEEecCCCcc-cCcccc--cc
Confidence            5532 22222  23455566555432110               01111221 4567888888777644 233222  15


Q ss_pred             CcCceecccCCC-CccccCCCcccccceeeeccChhHHH
Q 039689          717 SLKFLDLDNCPK-LKYFSKQGLPKSLLRLIIDECPLIEK  754 (763)
Q Consensus       717 ~L~~L~l~~c~~-L~~l~~~~~~~~L~~L~i~~C~~l~~  754 (763)
                      +|+.|+++.+.. ...++...+|+++ .|++.+|.++..
T Consensus       178 SLk~L~ls~n~~~sLeI~~~sLP~nl-~L~f~n~lkL~~  215 (426)
T PRK15386        178 SLQSITLHIEQKTTWNISFEGFPDGL-DIDLQNSVLLSP  215 (426)
T ss_pred             cCcEEEecccccccccCccccccccc-EechhhhcccCH
Confidence            777777766421 1124445666777 777777766544

>PRK15386 type III secretion protein GogB; Provisional

Probab=98.64  E-value=1.1e-07  Score=97.42  Aligned_cols=134  Identities=29%  Similarity=0.512  Sum_probs=97.2

Q ss_pred             CCCcceEEEecCccccccCCCCCCCCccEEEEccCCCCCCCchhhhcCCCCCcceEeeccCCCccccccccCCCCCcEEE
Q 039689          581 NSSLESLKIRSCNSLVSFPDFALPSQLRTVTIKGCDALESLPEAWMQNSSTSLESLAIDSCDSLTYIARIQLPPSLKRLI  660 (763)
Q Consensus       581 l~~L~~L~l~~c~~l~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~L~~L~  660 (763)
                      +..++.|++++| .++.+|  ..+++|++|.+++|..++.+|..+    .++|+.|++++|..+..+     |++|+.|.
T Consensus        51 ~~~l~~L~Is~c-~L~sLP--~LP~sLtsL~Lsnc~nLtsLP~~L----P~nLe~L~Ls~Cs~L~sL-----P~sLe~L~  118 (426)
T PRK15386         51 ARASGRLYIKDC-DIESLP--VLPNELTEITIENCNNLTTLPGSI----PEGLEKLTVCHCPEISGL-----PESVRSLE  118 (426)
T ss_pred             hcCCCEEEeCCC-CCcccC--CCCCCCcEEEccCCCCcccCCchh----hhhhhheEccCccccccc-----ccccceEE
Confidence            688999999988 688888  567889999999999998888643    468999999999777543     45566665


Q ss_pred             EecCCCCCCCccceEEecCCCCCccccCCCCCCcCeEeeccCCCCc--cccCCCCCC-CCcCceecccCCCCccccCCCc
Q 039689          661 IFRCDNLRFNSLRKLKISGGCPDLVSSPRFPASLTELKISDMPSLE--RLSSIGENL-TSLKFLDLDNCPKLKYFSKQGL  737 (763)
Q Consensus       661 l~~c~~l~~~~L~~L~l~~~~~~l~~~~~~~~~L~~L~l~~~~~l~--~ip~~~~~l-~~L~~L~l~~c~~L~~l~~~~~  737 (763)
                      +.                  +.....++..|++|++|.+.+++...  .+|   ..+ ++|++|++++|..+. +| ..+
T Consensus       119 L~------------------~n~~~~L~~LPssLk~L~I~~~n~~~~~~lp---~~LPsSLk~L~Is~c~~i~-LP-~~L  175 (426)
T PRK15386        119 IK------------------GSATDSIKNVPNGLTSLSINSYNPENQARID---NLISPSLKTLSLTGCSNII-LP-EKL  175 (426)
T ss_pred             eC------------------CCCCcccccCcchHhheeccccccccccccc---cccCCcccEEEecCCCccc-Cc-ccc
Confidence            42                  23333344456789999986533221  112   122 689999999998654 44 458


Q ss_pred             ccccceeeeccC
Q 039689          738 PKSLLRLIIDEC  749 (763)
Q Consensus       738 ~~~L~~L~i~~C  749 (763)
                      |.+|+.|+++.+
T Consensus       176 P~SLk~L~ls~n  187 (426)
T PRK15386        176 PESLQSITLHIE  187 (426)
T ss_pred             cccCcEEEeccc
Confidence            899999999775

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=98.61  E-value=4.1e-08  Score=73.43  Aligned_cols=57  Identities=30%  Similarity=0.487  Sum_probs=43.9

Q ss_pred             CcccEEEecCCCCCccC-cccCCCCcccEEecCCCCchhcc-hhhhhcccccEEeeccc
Q 039689          197 PRLRVFSLRGYNIFELP-KAIENLKHLRFLDLSTTKIEILR-ESINTLYNLHTLLLEDC  253 (763)
Q Consensus       197 ~~Lr~L~L~~~~i~~lp-~~~~~l~~L~~L~L~~~~i~~lp-~~~~~L~~L~~L~L~~~  253 (763)
                      ++|++|++++|+++.+| ..|.++++|++|++++|.++.+| ..|.++++|++|++++|
T Consensus         1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N   59 (61)
T PF13855_consen    1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNN   59 (61)
T ss_dssp             TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSS
T ss_pred             CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCC
Confidence            46788888888888775 57778888888888888888774 46678888888888775

...

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=98.61  E-value=9.9e-09  Score=107.12  Aligned_cols=90  Identities=26%  Similarity=0.266  Sum_probs=56.0

Q ss_pred             hhhccCCCCcccEEEecCCCCCc-cCcccCCCCc---ccEEecCCCCch-----hcchhhhhc-ccccEEeecccccc--
Q 039689          189 VLQRLLNLPRLRVFSLRGYNIFE-LPKAIENLKH---LRFLDLSTTKIE-----ILRESINTL-YNLHTLLLEDCRRL--  256 (763)
Q Consensus       189 ~~~~~~~l~~Lr~L~L~~~~i~~-lp~~~~~l~~---L~~L~L~~~~i~-----~lp~~~~~L-~~L~~L~L~~~~~l--  256 (763)
                      ++..+..+++|+.|++++|.+.. .+..+..+.+   |++|++++|.++     .+...+..+ ++|+.|++++|...  
T Consensus        73 ~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~  152 (319)
T cd00116          73 LLQGLTKGCGLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGA  152 (319)
T ss_pred             HHHHHHhcCceeEEEccCCCCChhHHHHHHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCch
Confidence            34455557777888887777653 2344444443   778888777765     234455666 77788887775422  


Q ss_pred             --ccccccccCcccccccccCCcc
Q 039689          257 --KKLCKDMGNLTKLHHLNNSNVG  278 (763)
Q Consensus       257 --~~lp~~i~~L~~L~~L~l~~~~  278 (763)
                        ..++..+..+++|++|++++|.
T Consensus       153 ~~~~~~~~~~~~~~L~~L~l~~n~  176 (319)
T cd00116         153 SCEALAKALRANRDLKELNLANNG  176 (319)
T ss_pred             HHHHHHHHHHhCCCcCEEECcCCC
Confidence              1334445666777777777775

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=98.58  E-value=3.1e-08  Score=106.51  Aligned_cols=91  Identities=36%  Similarity=0.446  Sum_probs=78.7

Q ss_pred             cCCCCcccEEEecCCCCCccCcccCCCC-cccEEecCCCCchhcchhhhhcccccEEeeccccccccccccccCcccccc
Q 039689          193 LLNLPRLRVFSLRGYNIFELPKAIENLK-HLRFLDLSTTKIEILRESINTLYNLHTLLLEDCRRLKKLCKDMGNLTKLHH  271 (763)
Q Consensus       193 ~~~l~~Lr~L~L~~~~i~~lp~~~~~l~-~L~~L~L~~~~i~~lp~~~~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~  271 (763)
                      +..++.++.|++.+|.+.++|.....+. +|++|++++|.+..+|..++.+++|+.|++++ +.+..+|...+.+++|+.
T Consensus       112 ~~~~~~l~~L~l~~n~i~~i~~~~~~~~~nL~~L~l~~N~i~~l~~~~~~l~~L~~L~l~~-N~l~~l~~~~~~~~~L~~  190 (394)
T COG4886         112 LLELTNLTSLDLDNNNITDIPPLIGLLKSNLKELDLSDNKIESLPSPLRNLPNLKNLDLSF-NDLSDLPKLLSNLSNLNN  190 (394)
T ss_pred             hhcccceeEEecCCcccccCccccccchhhcccccccccchhhhhhhhhccccccccccCC-chhhhhhhhhhhhhhhhh
Confidence            3455789999999999999988888885 99999999999999988899999999999999 688889887778999999


Q ss_pred             cccCCccccccccc
Q 039689          272 LNNSNVGSLEEMLM  285 (763)
Q Consensus       272 L~l~~~~~l~~l~~  285 (763)
                      |++++|. +..+|.
T Consensus       191 L~ls~N~-i~~l~~  203 (394)
T COG4886         191 LDLSGNK-ISDLPP  203 (394)
T ss_pred             eeccCCc-cccCch
Confidence            9999998 776665

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=98.56  E-value=6.1e-08  Score=88.61  Aligned_cols=86  Identities=29%  Similarity=0.442  Sum_probs=42.3

Q ss_pred             hccC-CCCcccEEEecCCCCCccCcccCCCCcccEEecCCCCchhcchhh-hhcccccEEeeccccccccccc--cccCc
Q 039689          191 QRLL-NLPRLRVFSLRGYNIFELPKAIENLKHLRFLDLSTTKIEILRESI-NTLYNLHTLLLEDCRRLKKLCK--DMGNL  266 (763)
Q Consensus       191 ~~~~-~l~~Lr~L~L~~~~i~~lp~~~~~l~~L~~L~L~~~~i~~lp~~~-~~L~~L~~L~L~~~~~l~~lp~--~i~~L  266 (763)
                      +.+. .+.+|++|++++|.|+.++ .+..+++|++|++++|.|+++++.+ ..+++|++|++++ +.+..+-+  .++.+
T Consensus        35 e~L~~~l~~L~~L~Ls~N~I~~l~-~l~~L~~L~~L~L~~N~I~~i~~~l~~~lp~L~~L~L~~-N~I~~l~~l~~L~~l  112 (175)
T PF14580_consen   35 ENLGATLDKLEVLDLSNNQITKLE-GLPGLPRLKTLDLSNNRISSISEGLDKNLPNLQELYLSN-NKISDLNELEPLSSL  112 (175)
T ss_dssp             -S--TT-TT--EEE-TTS--S--T-T----TT--EEE--SS---S-CHHHHHH-TT--EEE-TT-S---SCCCCGGGGG-
T ss_pred             cchhhhhcCCCEEECCCCCCcccc-CccChhhhhhcccCCCCCCccccchHHhCCcCCEEECcC-CcCCChHHhHHHHcC
Confidence            3443 5789999999999999985 5888999999999999999997766 5799999999999 57766543  36788


Q ss_pred             ccccccccCCcc
Q 039689          267 TKLHHLNNSNVG  278 (763)
Q Consensus       267 ~~L~~L~l~~~~  278 (763)
                      ++|++|++.+|.
T Consensus       113 ~~L~~L~L~~NP  124 (175)
T PF14580_consen  113 PKLRVLSLEGNP  124 (175)
T ss_dssp             TT--EEE-TT-G
T ss_pred             CCcceeeccCCc
Confidence            999999999998

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]

Probab=98.52  E-value=1.2e-08  Score=96.70  Aligned_cols=36  Identities=19%  Similarity=0.295  Sum_probs=22.8

Q ss_pred             CCceEEEEeccCC--CCCCCCCCCCCCCCcceecccCC
Q 039689          374 SKLMLLKFDNCGT--CTSLPSVGQLPFLKDPVISGMGR  409 (763)
Q Consensus       374 ~~L~~L~l~~~~~--~~~l~~l~~l~~L~~L~l~~~~~  409 (763)
                      -+|..|++++|..  ++.+..+|++|.|+.+.+.+++.
T Consensus       374 YSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl  411 (490)
T KOG1259|consen  374 YSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPL  411 (490)
T ss_pred             hhheeccccccchhhHHHhcccccccHHHHHhhcCCCc
Confidence            4555566666542  33445777788888887777654

>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]

Probab=98.50  E-value=7.1e-09  Score=106.89  Aligned_cols=157  Identities=23%  Similarity=0.316  Sum_probs=106.4

Q ss_pred             hhhccCCCCcccEEEecCCCCCccCcccCCCCcccEEecCCCCchhcchhhhhcccccEEeeccccccccccccccCccc
Q 039689          189 VLQRLLNLPRLRVFSLRGYNIFELPKAIENLKHLRFLDLSTTKIEILRESINTLYNLHTLLLEDCRRLKKLCKDMGNLTK  268 (763)
Q Consensus       189 ~~~~~~~l~~Lr~L~L~~~~i~~lp~~~~~l~~L~~L~L~~~~i~~lp~~~~~L~~L~~L~L~~~~~l~~lp~~i~~L~~  268 (763)
                      +|..+..+..|..+.|..|.+..+|..++.+..|.+|||+.|+++.+|..+..|+ |+.|.+++ +++..+|++++.+..
T Consensus        90 lp~~~~~f~~Le~liLy~n~~r~ip~~i~~L~~lt~l~ls~NqlS~lp~~lC~lp-Lkvli~sN-Nkl~~lp~~ig~~~t  167 (722)
T KOG0532|consen   90 LPEEACAFVSLESLILYHNCIRTIPEAICNLEALTFLDLSSNQLSHLPDGLCDLP-LKVLIVSN-NKLTSLPEEIGLLPT  167 (722)
T ss_pred             CchHHHHHHHHHHHHHHhccceecchhhhhhhHHHHhhhccchhhcCChhhhcCc-ceeEEEec-CccccCCcccccchh
Confidence            4555666677778888888888888888888888888888888888888887764 78888887 688888888888888


Q ss_pred             ccccccCCccccccccc-CCCccCCCceeeecCcccccCcccchhhhhcCcccccceEEeeccCCCCCCccHHHHhhcCC
Q 039689          269 LHHLNNSNVGSLEEMLM-LKSLVHLQGTLEISRLENVKGVGDASEVQLNSKVNLKALYLQWGVRDAVEPKTETQVIDMLK  347 (763)
Q Consensus       269 L~~L~l~~~~~l~~l~~-l~~L~~L~~~L~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~l~  347 (763)
                      |.+||.+.|. ++.+|. +..|..|+                             .|.+..|..        ....+.+.
T Consensus       168 l~~ld~s~ne-i~slpsql~~l~slr-----------------------------~l~vrRn~l--------~~lp~El~  209 (722)
T KOG0532|consen  168 LAHLDVSKNE-IQSLPSQLGYLTSLR-----------------------------DLNVRRNHL--------EDLPEELC  209 (722)
T ss_pred             HHHhhhhhhh-hhhchHHhhhHHHHH-----------------------------HHHHhhhhh--------hhCCHHHh
Confidence            8888888887 555543 44444444                             222222210        01112222


Q ss_pred             CCCCceEEEeeeCCCCCCCccCCCCCCCceEEEEeccCCC
Q 039689          348 PHQKLELTITGYGGTKFPIWLGDSLFSKLMLLKFDNCGTC  387 (763)
Q Consensus       348 ~l~~L~L~~~~~~~~~~p~~~~~~~~~~L~~L~l~~~~~~  387 (763)
                      .++-..|+++.++...+|-.+..  +..|++|.|.+|+..
T Consensus       210 ~LpLi~lDfScNkis~iPv~fr~--m~~Lq~l~LenNPLq  247 (722)
T KOG0532|consen  210 SLPLIRLDFSCNKISYLPVDFRK--MRHLQVLQLENNPLQ  247 (722)
T ss_pred             CCceeeeecccCceeecchhhhh--hhhheeeeeccCCCC
Confidence            22222566666667777766665  777778888777643

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]

Probab=98.47  E-value=5.6e-08  Score=97.37  Aligned_cols=84  Identities=27%  Similarity=0.299  Sum_probs=61.7

Q ss_pred             CCCCcccEEEecCCCCCccC--cccCCCCcccEEecCCCCchh---cchhhhhcccccEEeecccccccccccc--ccCc
Q 039689          194 LNLPRLRVFSLRGYNIFELP--KAIENLKHLRFLDLSTTKIEI---LRESINTLYNLHTLLLEDCRRLKKLCKD--MGNL  266 (763)
Q Consensus       194 ~~l~~Lr~L~L~~~~i~~lp--~~~~~l~~L~~L~L~~~~i~~---lp~~~~~L~~L~~L~L~~~~~l~~lp~~--i~~L  266 (763)
                      +++++||...|.++.+...+  .....+++++.||||+|-+..   +-.-...|++|+.|+|+.| .+...-++  -..+
T Consensus       118 sn~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~N-rl~~~~~s~~~~~l  196 (505)
T KOG3207|consen  118 SNLKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSN-RLSNFISSNTTLLL  196 (505)
T ss_pred             hhHHhhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccc-cccCCccccchhhh
Confidence            67888999999998887766  467789999999999987663   3445578999999999984 44332222  2356


Q ss_pred             ccccccccCCcc
Q 039689          267 TKLHHLNNSNVG  278 (763)
Q Consensus       267 ~~L~~L~l~~~~  278 (763)
                      ++|+.|.+++|.
T Consensus       197 ~~lK~L~l~~CG  208 (505)
T KOG3207|consen  197 SHLKQLVLNSCG  208 (505)
T ss_pred             hhhheEEeccCC
Confidence            677777787776

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]

Probab=98.44  E-value=3e-08  Score=99.22  Aligned_cols=161  Identities=16%  Similarity=0.228  Sum_probs=98.6

Q ss_pred             cCCcccEEEEecCcchh----hcCCCCCcccEEEEecCCcccccCCCccccceeccccchhhhhhcCCCCCCceEEEecc
Q 039689          448 RLLLLEKLNIFRCEQLL----VTLQCLPALRELEIDGCKGVVLSSPTDLSSLKLVHSRDMAKEVFEQGLPKLERLEIQHV  523 (763)
Q Consensus       448 ~~~~L~~L~l~~~~~l~----~~l~~l~~L~~L~l~~~~~~~~~~~~~L~~L~~~~~~~~~~~~~~~~~~~L~~L~l~~~  523 (763)
                      .+.+|+++.+.+|+.-.    ...+.+|+++.|++++|-...+.                ....+...+|+|+.|.++.|
T Consensus       119 n~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~----------------~v~~i~eqLp~Le~LNls~N  182 (505)
T KOG3207|consen  119 NLKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWF----------------PVLKIAEQLPSLENLNLSSN  182 (505)
T ss_pred             hHHhhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHH----------------HHHHHHHhcccchhcccccc
Confidence            56677777777765211    24566889999999987433321                11223367899999999988


Q ss_pred             CCccccccccCcCCccccccCceeeccCCchhhhcceeeeccCCCc-ccccchhhhcCCCCcceEEEecCccccc-cCCC
Q 039689          524 REQTYLWRSETRLPQDIRSLNRLQISRCPQLISLLRTVKIEDCNAL-ESLPEAWMHNSNSSLESLKIRSCNSLVS-FPDF  601 (763)
Q Consensus       524 ~~l~~l~~~~~~~p~~l~~L~~L~l~~~~~l~~~L~~L~l~~~~~l-~~l~~~~~~~~l~~L~~L~l~~c~~l~~-~~~~  601 (763)
                      .....           ..+.....++.       |+.|.+++|.-- ..+..  ....+|+|+.|++++|+.+.. -...
T Consensus       183 rl~~~-----------~~s~~~~~l~~-------lK~L~l~~CGls~k~V~~--~~~~fPsl~~L~L~~N~~~~~~~~~~  242 (505)
T KOG3207|consen  183 RLSNF-----------ISSNTTLLLSH-------LKQLVLNSCGLSWKDVQW--ILLTFPSLEVLYLEANEIILIKATST  242 (505)
T ss_pred             cccCC-----------ccccchhhhhh-------hheEEeccCCCCHHHHHH--HHHhCCcHHHhhhhcccccceecchh
Confidence            75431           11222223333       666666666432 22211  223489999999998853322 2234


Q ss_pred             CCCCCccEEEEccCCCCCCCchhhhcCCCCCcceEeeccCCCccc
Q 039689          602 ALPSQLRTVTIKGCDALESLPEAWMQNSSTSLESLAIDSCDSLTY  646 (763)
Q Consensus       602 ~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~  646 (763)
                      ..+..|++|+|++|+.+. .+..-....+|.|+.|+++.| .+.+
T Consensus       243 ~i~~~L~~LdLs~N~li~-~~~~~~~~~l~~L~~Lnls~t-gi~s  285 (505)
T KOG3207|consen  243 KILQTLQELDLSNNNLID-FDQGYKVGTLPGLNQLNLSST-GIAS  285 (505)
T ss_pred             hhhhHHhhccccCCcccc-cccccccccccchhhhhcccc-Ccch
Confidence            667889999999986554 332112278999999999988 4444

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=98.43  E-value=1.7e-07  Score=69.98  Aligned_cols=58  Identities=34%  Similarity=0.418  Sum_probs=52.0

Q ss_pred             CcccEEecCCCCchhcc-hhhhhcccccEEeeccccccccccc-cccCcccccccccCCcc
Q 039689          220 KHLRFLDLSTTKIEILR-ESINTLYNLHTLLLEDCRRLKKLCK-DMGNLTKLHHLNNSNVG  278 (763)
Q Consensus       220 ~~L~~L~L~~~~i~~lp-~~~~~L~~L~~L~L~~~~~l~~lp~-~i~~L~~L~~L~l~~~~  278 (763)
                      ++|++|++++|.++.+| ..|.++++|++|++++ +.+..+|+ .|..+++|++|++++|.
T Consensus         1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~-N~l~~i~~~~f~~l~~L~~L~l~~N~   60 (61)
T PF13855_consen    1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSN-NNLTSIPPDAFSNLPNLRYLDLSNNN   60 (61)
T ss_dssp             TTESEEEETSSTESEECTTTTTTGTTESEEEETS-SSESEEETTTTTTSTTESEEEETSSS
T ss_pred             CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccC-CccCccCHHHHcCCCCCCEEeCcCCc
Confidence            57999999999999997 5779999999999998 57788876 58999999999999986

...

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=98.36  E-value=2.9e-07  Score=98.96  Aligned_cols=84  Identities=25%  Similarity=0.269  Sum_probs=71.9

Q ss_pred             cEEEecCCCCCccCcccCCCCcccEEecCCCCchhcchhhhhcc-cccEEeeccccccccccccccCcccccccccCCcc
Q 039689          200 RVFSLRGYNIFELPKAIENLKHLRFLDLSTTKIEILRESINTLY-NLHTLLLEDCRRLKKLCKDMGNLTKLHHLNNSNVG  278 (763)
Q Consensus       200 r~L~L~~~~i~~lp~~~~~l~~L~~L~L~~~~i~~lp~~~~~L~-~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l~~~~  278 (763)
                      ..+++..+.+...+..+..++.++.|++.+|.++.+|+..+.+. +|+.|++++ +.+..+|..++.+++|+.|++++|.
T Consensus        96 ~~l~~~~~~~~~~~~~~~~~~~l~~L~l~~n~i~~i~~~~~~~~~nL~~L~l~~-N~i~~l~~~~~~l~~L~~L~l~~N~  174 (394)
T COG4886          96 PSLDLNLNRLRSNISELLELTNLTSLDLDNNNITDIPPLIGLLKSNLKELDLSD-NKIESLPSPLRNLPNLKNLDLSFND  174 (394)
T ss_pred             ceeeccccccccCchhhhcccceeEEecCCcccccCccccccchhhcccccccc-cchhhhhhhhhccccccccccCCch
Confidence            36888888875555666677999999999999999999999995 999999999 7899998889999999999999998


Q ss_pred             ccccccc
Q 039689          279 SLEEMLM  285 (763)
Q Consensus       279 ~l~~l~~  285 (763)
                       +..++.
T Consensus       175 -l~~l~~  180 (394)
T COG4886         175 -LSDLPK  180 (394)
T ss_pred             -hhhhhh
Confidence             665554

>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]

Probab=98.32  E-value=1.9e-07  Score=91.12  Aligned_cols=90  Identities=24%  Similarity=0.221  Sum_probs=62.3

Q ss_pred             hhhccCCCCcccEEEecCCCCCc-----cCcccCCCCcccEEecCCC----Cchhcchhh-------hhcccccEEeecc
Q 039689          189 VLQRLLNLPRLRVFSLRGYNIFE-----LPKAIENLKHLRFLDLSTT----KIEILRESI-------NTLYNLHTLLLED  252 (763)
Q Consensus       189 ~~~~~~~l~~Lr~L~L~~~~i~~-----lp~~~~~l~~L~~L~L~~~----~i~~lp~~~-------~~L~~L~~L~L~~  252 (763)
                      +.+....+..+..++|+||.+..     +-..+.+.++|+.-++|+-    ...++|+.+       -..++|++||||+
T Consensus        22 v~~~~~~~~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSD  101 (382)
T KOG1909|consen   22 VEEELEPMDSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLDLSD  101 (382)
T ss_pred             HHHHhcccCceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEeeccc
Confidence            44455677888999999998753     3455677788999998863    123555543       3446899999999


Q ss_pred             ccccccccc----cccCcccccccccCCcc
Q 039689          253 CRRLKKLCK----DMGNLTKLHHLNNSNVG  278 (763)
Q Consensus       253 ~~~l~~lp~----~i~~L~~L~~L~l~~~~  278 (763)
                      |-.=..-++    -+.+.+.|++|+|.+|.
T Consensus       102 NA~G~~g~~~l~~ll~s~~~L~eL~L~N~G  131 (382)
T KOG1909|consen  102 NAFGPKGIRGLEELLSSCTDLEELYLNNCG  131 (382)
T ss_pred             cccCccchHHHHHHHHhccCHHHHhhhcCC
Confidence            533222232    25678899999999997

>PLN03150 hypothetical protein; Provisional

Probab=98.23  E-value=1.2e-06  Score=98.65  Aligned_cols=88  Identities=22%  Similarity=0.252  Sum_probs=69.8

Q ss_pred             cccEEEecCCCCC-ccCcccCCCCcccEEecCCCCch-hcchhhhhcccccEEeeccccccccccccccCcccccccccC
Q 039689          198 RLRVFSLRGYNIF-ELPKAIENLKHLRFLDLSTTKIE-ILRESINTLYNLHTLLLEDCRRLKKLCKDMGNLTKLHHLNNS  275 (763)
Q Consensus       198 ~Lr~L~L~~~~i~-~lp~~~~~l~~L~~L~L~~~~i~-~lp~~~~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l~  275 (763)
                      .++.|+|++|.+. .+|..|+.+++|++|+|++|.+. .+|..++.+++|++|+|++|.....+|+.+++|++|++|+++
T Consensus       419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls  498 (623)
T PLN03150        419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLN  498 (623)
T ss_pred             EEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECc
Confidence            4778888888876 46788888888888888888887 678888888888888888866556788888888888888888


Q ss_pred             Cccccccccc
Q 039689          276 NVGSLEEMLM  285 (763)
Q Consensus       276 ~~~~l~~l~~  285 (763)
                      +|..-..+|.
T Consensus       499 ~N~l~g~iP~  508 (623)
T PLN03150        499 GNSLSGRVPA  508 (623)
T ss_pred             CCcccccCCh
Confidence            8873334554

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=98.22  E-value=1.3e-06  Score=59.47  Aligned_cols=38  Identities=32%  Similarity=0.474  Sum_probs=18.4

Q ss_pred             cccEEEecCCCCCccCcccCCCCcccEEecCCCCchhc
Q 039689          198 RLRVFSLRGYNIFELPKAIENLKHLRFLDLSTTKIEIL  235 (763)
Q Consensus       198 ~Lr~L~L~~~~i~~lp~~~~~l~~L~~L~L~~~~i~~l  235 (763)
                      +|++|++++|+|+.+|..++.|++|++|++++|.|+++
T Consensus         2 ~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N~i~~i   39 (44)
T PF12799_consen    2 NLEELDLSNNQITDLPPELSNLPNLETLNLSNNPISDI   39 (44)
T ss_dssp             T-SEEEETSSS-SSHGGHGTTCTTSSEEEETSSCCSBE
T ss_pred             cceEEEccCCCCcccCchHhCCCCCCEEEecCCCCCCC
Confidence            44555555555555544455555555555555554443

...

>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]

Probab=98.15  E-value=1.8e-07  Score=96.76  Aligned_cols=134  Identities=27%  Similarity=0.314  Sum_probs=103.4

Q ss_pred             hhhccCCCCcccEEEecCCCCCccCcccCCCCcccEEecCCCCchhcchhhhhcccccEEeeccccccccccccccCccc
Q 039689          189 VLQRLLNLPRLRVFSLRGYNIFELPKAIENLKHLRFLDLSTTKIEILRESINTLYNLHTLLLEDCRRLKKLCKDMGNLTK  268 (763)
Q Consensus       189 ~~~~~~~l~~Lr~L~L~~~~i~~lp~~~~~l~~L~~L~L~~~~i~~lp~~~~~L~~L~~L~L~~~~~l~~lp~~i~~L~~  268 (763)
                      ++..+..+..|.+|||+.|+++.+|..++.|+ |++|-+++|+++.+|+.++.+..|..||.+. +.+..+|..++.|.+
T Consensus       113 ip~~i~~L~~lt~l~ls~NqlS~lp~~lC~lp-Lkvli~sNNkl~~lp~~ig~~~tl~~ld~s~-nei~slpsql~~l~s  190 (722)
T KOG0532|consen  113 IPEAICNLEALTFLDLSSNQLSHLPDGLCDLP-LKVLIVSNNKLTSLPEEIGLLPTLAHLDVSK-NEIQSLPSQLGYLTS  190 (722)
T ss_pred             cchhhhhhhHHHHhhhccchhhcCChhhhcCc-ceeEEEecCccccCCcccccchhHHHhhhhh-hhhhhchHHhhhHHH
Confidence            57777888899999999999988888887765 8999999999999999999889999999988 578888888999999


Q ss_pred             ccccccCCccccccccc-CCCccCCCceeeecCcccccCcccchhhhhcCcccccceEEeeccCC
Q 039689          269 LHHLNNSNVGSLEEMLM-LKSLVHLQGTLEISRLENVKGVGDASEVQLNSKVNLKALYLQWGVRD  332 (763)
Q Consensus       269 L~~L~l~~~~~l~~l~~-l~~L~~L~~~L~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~  332 (763)
                      |+.|.+..|. +..+|. +..|+ |. +|+++.     +.....+..|.+|++|+.|.+..|...
T Consensus       191 lr~l~vrRn~-l~~lp~El~~Lp-Li-~lDfSc-----Nkis~iPv~fr~m~~Lq~l~LenNPLq  247 (722)
T KOG0532|consen  191 LRDLNVRRNH-LEDLPEELCSLP-LI-RLDFSC-----NKISYLPVDFRKMRHLQVLQLENNPLQ  247 (722)
T ss_pred             HHHHHHhhhh-hhhCCHHHhCCc-ee-eeeccc-----CceeecchhhhhhhhheeeeeccCCCC
Confidence            9999998887 555554 44332 22 344433     222345567888899999988777443

>PLN03150 hypothetical protein; Provisional

Probab=98.13  E-value=2.3e-06  Score=96.46  Aligned_cols=93  Identities=22%  Similarity=0.310  Sum_probs=66.0

Q ss_pred             hhhccCCCCcccEEEecCCCCC-ccCcccCCCCcccEEecCCCCch-hcchhhhhcccccEEeeccccccccccccccCc
Q 039689          189 VLQRLLNLPRLRVFSLRGYNIF-ELPKAIENLKHLRFLDLSTTKIE-ILRESINTLYNLHTLLLEDCRRLKKLCKDMGNL  266 (763)
Q Consensus       189 ~~~~~~~l~~Lr~L~L~~~~i~-~lp~~~~~l~~L~~L~L~~~~i~-~lp~~~~~L~~L~~L~L~~~~~l~~lp~~i~~L  266 (763)
                      ++..+..+++|+.|+|++|.+. .+|..++.+++|++|+|++|.++ .+|+.+++|++|++|+|++|.....+|..++.+
T Consensus       434 ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~N~l~g~iP~~l~~~  513 (623)
T PLN03150        434 IPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGNSLSGRVPAALGGR  513 (623)
T ss_pred             CCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcCCcccccCChHHhhc
Confidence            5566677777888888777765 46777777788888888877776 567777778888888887766556777766553


Q ss_pred             -ccccccccCCccccc
Q 039689          267 -TKLHHLNNSNVGSLE  281 (763)
Q Consensus       267 -~~L~~L~l~~~~~l~  281 (763)
                       .++..+++.+|..+.
T Consensus       514 ~~~~~~l~~~~N~~lc  529 (623)
T PLN03150        514 LLHRASFNFTDNAGLC  529 (623)
T ss_pred             cccCceEEecCCcccc
Confidence             356666776665333

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=98.08  E-value=3.8e-06  Score=57.18  Aligned_cols=40  Identities=35%  Similarity=0.434  Sum_probs=31.0

Q ss_pred             CcccEEecCCCCchhcchhhhhcccccEEeecccccccccc
Q 039689          220 KHLRFLDLSTTKIEILRESINTLYNLHTLLLEDCRRLKKLC  260 (763)
Q Consensus       220 ~~L~~L~L~~~~i~~lp~~~~~L~~L~~L~L~~~~~l~~lp  260 (763)
                      ++|++|++++|.|+.+|+.+++|++|++|++++| .+..+|
T Consensus         1 ~~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N-~i~~i~   40 (44)
T PF12799_consen    1 KNLEELDLSNNQITDLPPELSNLPNLETLNLSNN-PISDIS   40 (44)
T ss_dssp             TT-SEEEETSSS-SSHGGHGTTCTTSSEEEETSS-CCSBEG
T ss_pred             CcceEEEccCCCCcccCchHhCCCCCCEEEecCC-CCCCCc
Confidence            4788899999998888888888999999999884 566554

...

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]

Probab=98.07  E-value=1.8e-07  Score=89.06  Aligned_cols=86  Identities=28%  Similarity=0.347  Sum_probs=56.8

Q ss_pred             CcccEEecCCCCch--hcchhhhhcccccEEeeccccccccccccccCcccccccccCCcccccccccCCCccCCCceee
Q 039689          220 KHLRFLDLSTTKIE--ILRESINTLYNLHTLLLEDCRRLKKLCKDMGNLTKLHHLNNSNVGSLEEMLMLKSLVHLQGTLE  297 (763)
Q Consensus       220 ~~L~~L~L~~~~i~--~lp~~~~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~l~~l~~L~~L~~~L~  297 (763)
                      +.|++||||...|+  .+-.-+....+|+.|.|.+...-..+-..|++-.+|+.|++++|..+.+               
T Consensus       185 sRlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~---------------  249 (419)
T KOG2120|consen  185 SRLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTE---------------  249 (419)
T ss_pred             hhhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccch---------------
Confidence            45788888887776  4445557777888888887544444555577778888888888763322               


Q ss_pred             ecCcccccCcccchhhhhcCcccccceEEeeccC
Q 039689          298 ISRLENVKGVGDASEVQLNSKVNLKALYLQWGVR  331 (763)
Q Consensus       298 ~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~  331 (763)
                                 .+...-+.+++.|.+|+++|+..
T Consensus       250 -----------n~~~ll~~scs~L~~LNlsWc~l  272 (419)
T KOG2120|consen  250 -----------NALQLLLSSCSRLDELNLSWCFL  272 (419)
T ss_pred             -----------hHHHHHHHhhhhHhhcCchHhhc
Confidence                       12223456677788888888754

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]

Probab=98.06  E-value=1e-06  Score=83.89  Aligned_cols=136  Identities=20%  Similarity=0.197  Sum_probs=99.3

Q ss_pred             hhccCCCCcccEEEecCCCCCccCcccCCCCcccEEecCCCCchhcchhhhhcccccEEeeccccccccccccccCcccc
Q 039689          190 LQRLLNLPRLRVFSLRGYNIFELPKAIENLKHLRFLDLSTTKIEILRESINTLYNLHTLLLEDCRRLKKLCKDMGNLTKL  269 (763)
Q Consensus       190 ~~~~~~l~~Lr~L~L~~~~i~~lp~~~~~l~~L~~L~L~~~~i~~lp~~~~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L  269 (763)
                      ...+...+.|..|||++|.|+.+.++..-.+.+|.|++|+|+|..+.. +..|.+|+.|||++ +.+..+-..=.+|-|.
T Consensus       277 ~~~~dTWq~LtelDLS~N~I~~iDESvKL~Pkir~L~lS~N~i~~v~n-La~L~~L~~LDLS~-N~Ls~~~Gwh~KLGNI  354 (490)
T KOG1259|consen  277 LVSADTWQELTELDLSGNLITQIDESVKLAPKLRRLILSQNRIRTVQN-LAELPQLQLLDLSG-NLLAECVGWHLKLGNI  354 (490)
T ss_pred             EEecchHhhhhhccccccchhhhhhhhhhccceeEEeccccceeeehh-hhhcccceEeeccc-chhHhhhhhHhhhcCE
Confidence            334455678899999999999998888889999999999999988844 88899999999999 5677665545577788


Q ss_pred             cccccCCcccccccccCCCccCCCceeeecCcccccCcccc-hhhhhcCcccccceEEeeccCCC
Q 039689          270 HHLNNSNVGSLEEMLMLKSLVHLQGTLEISRLENVKGVGDA-SEVQLNSKVNLKALYLQWGVRDA  333 (763)
Q Consensus       270 ~~L~l~~~~~l~~l~~l~~L~~L~~~L~~~~~~~~~~~~~~-~~~~l~~l~~L~~L~l~~~~~~~  333 (763)
                      +.|.+++|. ++.+..+++|-.|. .|+..+    +.+... ....+++++.|+.+.+..|....
T Consensus       355 KtL~La~N~-iE~LSGL~KLYSLv-nLDl~~----N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~~  413 (490)
T KOG1259|consen  355 KTLKLAQNK-IETLSGLRKLYSLV-NLDLSS----NQIEELDEVNHIGNLPCLETLRLTGNPLAG  413 (490)
T ss_pred             eeeehhhhh-HhhhhhhHhhhhhe-eccccc----cchhhHHHhcccccccHHHHHhhcCCCccc
Confidence            888898887 77766666655554 343332    111111 12357788899999998875443

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]

Probab=98.00  E-value=2.6e-07  Score=87.88  Aligned_cols=135  Identities=20%  Similarity=0.214  Sum_probs=73.7

Q ss_pred             CCCcceEEEecCccccccCC-CCCCCCccEEEEccCCCCCCCchhhhcCCCCCcceEeeccCCCccccc---cccCCCCC
Q 039689          581 NSSLESLKIRSCNSLVSFPD-FALPSQLRTVTIKGCDALESLPEAWMQNSSTSLESLAIDSCDSLTYIA---RIQLPPSL  656 (763)
Q Consensus       581 l~~L~~L~l~~c~~l~~~~~-~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~---~~~~~~~L  656 (763)
                      +..|+.|.+++...-..+.. +..-.+|+.|++++|..++......+...++.|+.|+++-|.-.+...   .....+.|
T Consensus       209 C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~LNlsWc~l~~~~Vtv~V~hise~l  288 (419)
T KOG2120|consen  209 CSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDELNLSWCFLFTEKVTVAVAHISETL  288 (419)
T ss_pred             HHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhhcCchHhhccchhhhHHHhhhchhh
Confidence            67788888877553222222 344567888888888888776655444788888888888884433221   11234566


Q ss_pred             cEEEEecCCCCCCCccceEEecCCCCCccccCCCCCCcCeEeeccCCCCcccc-CCCCCCCCcCceecccC
Q 039689          657 KRLIIFRCDNLRFNSLRKLKISGGCPDLVSSPRFPASLTELKISDMPSLERLS-SIGENLTSLKFLDLDNC  726 (763)
Q Consensus       657 ~~L~l~~c~~l~~~~L~~L~l~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~ip-~~~~~l~~L~~L~l~~c  726 (763)
                      ..|.+++|...    |+.-+       +..+....++|.+||+++|..++.-. ..+..|+.|++|.++.|
T Consensus       289 ~~LNlsG~rrn----l~~sh-------~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lSlsRC  348 (419)
T KOG2120|consen  289 TQLNLSGYRRN----LQKSH-------LSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHLSLSRC  348 (419)
T ss_pred             hhhhhhhhHhh----hhhhH-------HHHHHHhCCceeeeccccccccCchHHHHHHhcchheeeehhhh
Confidence            66666666532    11100       01111133455555555555544411 12245555555555555

>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]

Probab=97.88  E-value=2.8e-06  Score=91.46  Aligned_cols=89  Identities=27%  Similarity=0.328  Sum_probs=63.5

Q ss_pred             cCCCCcccEEEecCCCCCccCcccCCCCcccEEecCCCCchhcchhhhhcccccEEeeccccccccccccccCccccccc
Q 039689          193 LLNLPRLRVFSLRGYNIFELPKAIENLKHLRFLDLSTTKIEILRESINTLYNLHTLLLEDCRRLKKLCKDMGNLTKLHHL  272 (763)
Q Consensus       193 ~~~l~~Lr~L~L~~~~i~~lp~~~~~l~~L~~L~L~~~~i~~lp~~~~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L  272 (763)
                      +..++.|..|++.+|.|..+...+..+++|++|++++|.|+.+ ..+..+..|+.|++++ +.+..++. +..+++|+.+
T Consensus        91 l~~~~~l~~l~l~~n~i~~i~~~l~~~~~L~~L~ls~N~I~~i-~~l~~l~~L~~L~l~~-N~i~~~~~-~~~l~~L~~l  167 (414)
T KOG0531|consen   91 LSKLKSLEALDLYDNKIEKIENLLSSLVNLQVLDLSFNKITKL-EGLSTLTLLKELNLSG-NLISDISG-LESLKSLKLL  167 (414)
T ss_pred             cccccceeeeeccccchhhcccchhhhhcchheeccccccccc-cchhhccchhhheecc-CcchhccC-Cccchhhhcc
Confidence            4667777888888888777765577778888888888877777 3566677788888877 56666643 6667778888


Q ss_pred             ccCCccccccccc
Q 039689          273 NNSNVGSLEEMLM  285 (763)
Q Consensus       273 ~l~~~~~l~~l~~  285 (763)
                      ++++|. +..+..
T Consensus       168 ~l~~n~-i~~ie~  179 (414)
T KOG0531|consen  168 DLSYNR-IVDIEN  179 (414)
T ss_pred             cCCcch-hhhhhh
Confidence            887776 444443

>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]

Probab=97.80  E-value=7.3e-06  Score=88.24  Aligned_cols=128  Identities=30%  Similarity=0.341  Sum_probs=96.6

Q ss_pred             CCCcccEEEecCCCCCccCcccCCCCcccEEecCCCCchhcchhhhhcccccEEeeccccccccccccccCccccccccc
Q 039689          195 NLPRLRVFSLRGYNIFELPKAIENLKHLRFLDLSTTKIEILRESINTLYNLHTLLLEDCRRLKKLCKDMGNLTKLHHLNN  274 (763)
Q Consensus       195 ~l~~Lr~L~L~~~~i~~lp~~~~~l~~L~~L~L~~~~i~~lp~~~~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l  274 (763)
                      .+..++.+.+..|.+..+-..++.+++|++|++.+|.|..+...+..+++|++|++++ +.+..+.. +..++.|+.|++
T Consensus        70 ~l~~l~~l~l~~n~i~~~~~~l~~~~~l~~l~l~~n~i~~i~~~l~~~~~L~~L~ls~-N~I~~i~~-l~~l~~L~~L~l  147 (414)
T KOG0531|consen   70 SLTSLKELNLRQNLIAKILNHLSKLKSLEALDLYDNKIEKIENLLSSLVNLQVLDLSF-NKITKLEG-LSTLTLLKELNL  147 (414)
T ss_pred             HhHhHHhhccchhhhhhhhcccccccceeeeeccccchhhcccchhhhhcchheeccc-cccccccc-hhhccchhhhee
Confidence            4566677778888888866778999999999999999999976699999999999999 68888854 889999999999


Q ss_pred             CCcccccccccCCCccCCCceeeecCcccccCcccchh-hhhcCcccccceEEeeccC
Q 039689          275 SNVGSLEEMLMLKSLVHLQGTLEISRLENVKGVGDASE-VQLNSKVNLKALYLQWGVR  331 (763)
Q Consensus       275 ~~~~~l~~l~~l~~L~~L~~~L~~~~~~~~~~~~~~~~-~~l~~l~~L~~L~l~~~~~  331 (763)
                      ++|. +..+..+..+..|+ .+.+.+....    .... . ...+.+++.+++..|..
T Consensus       148 ~~N~-i~~~~~~~~l~~L~-~l~l~~n~i~----~ie~~~-~~~~~~l~~l~l~~n~i  198 (414)
T KOG0531|consen  148 SGNL-ISDISGLESLKSLK-LLDLSYNRIV----DIENDE-LSELISLEELDLGGNSI  198 (414)
T ss_pred             ccCc-chhccCCccchhhh-cccCCcchhh----hhhhhh-hhhccchHHHhccCCch
Confidence            9998 88877777766666 5554442111    1111 1 35566677777765543

>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]

Probab=97.73  E-value=7.2e-06  Score=69.09  Aligned_cols=83  Identities=20%  Similarity=0.229  Sum_probs=69.9

Q ss_pred             CCCcccEEEecCCCCCccCcccC-CCCcccEEecCCCCchhcchhhhhcccccEEeeccccccccccccccCcccccccc
Q 039689          195 NLPRLRVFSLRGYNIFELPKAIE-NLKHLRFLDLSTTKIEILRESINTLYNLHTLLLEDCRRLKKLCKDMGNLTKLHHLN  273 (763)
Q Consensus       195 ~l~~Lr~L~L~~~~i~~lp~~~~-~l~~L~~L~L~~~~i~~lp~~~~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~  273 (763)
                      ...+|+..+|++|.+.++|..|. ..+..+.|+|++|.|+++|.++..++.|+.|+++. +.+...|.-|..|.+|-.|+
T Consensus        51 ~~~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~neisdvPeE~Aam~aLr~lNl~~-N~l~~~p~vi~~L~~l~~Ld  129 (177)
T KOG4579|consen   51 KGYELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNEISDVPEELAAMPALRSLNLRF-NPLNAEPRVIAPLIKLDMLD  129 (177)
T ss_pred             CCceEEEEecccchhhhCCHHHhhccchhhhhhcchhhhhhchHHHhhhHHhhhccccc-CccccchHHHHHHHhHHHhc
Confidence            34567778899999998987764 45588999999999999999999999999999998 67888888888899999998


Q ss_pred             cCCcc
Q 039689          274 NSNVG  278 (763)
Q Consensus       274 l~~~~  278 (763)
                      ..++.
T Consensus       130 s~~na  134 (177)
T KOG4579|consen  130 SPENA  134 (177)
T ss_pred             CCCCc
Confidence            88876

>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]

Probab=97.52  E-value=3.7e-06  Score=89.72  Aligned_cols=85  Identities=25%  Similarity=0.252  Sum_probs=60.7

Q ss_pred             hccCCCCcccEEEecCCCCCccCcccCCCCcccEEecCCCCchhcchhhhhcccccEEeeccccccccccccccCccccc
Q 039689          191 QRLLNLPRLRVFSLRGYNIFELPKAIENLKHLRFLDLSTTKIEILRESINTLYNLHTLLLEDCRRLKKLCKDMGNLTKLH  270 (763)
Q Consensus       191 ~~~~~l~~Lr~L~L~~~~i~~lp~~~~~l~~L~~L~L~~~~i~~lp~~~~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~  270 (763)
                      +++.-++.|+.|+|++|++++.- .+..+.+|++|||++|.+..+|.--..=.+|+.|++++ |.++.+- +|.+|++|+
T Consensus       181 ~SLqll~ale~LnLshNk~~~v~-~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc~L~~L~lrn-N~l~tL~-gie~LksL~  257 (1096)
T KOG1859|consen  181 ESLQLLPALESLNLSHNKFTKVD-NLRRLPKLKHLDLSYNCLRHVPQLSMVGCKLQLLNLRN-NALTTLR-GIENLKSLY  257 (1096)
T ss_pred             HHHHHHHHhhhhccchhhhhhhH-HHHhcccccccccccchhccccccchhhhhheeeeecc-cHHHhhh-hHHhhhhhh
Confidence            34455677888888888877664 67778888888888888887764322223488888887 5677763 478888888


Q ss_pred             ccccCCcc
Q 039689          271 HLNNSNVG  278 (763)
Q Consensus       271 ~L~l~~~~  278 (763)
                      .||+++|-
T Consensus       258 ~LDlsyNl  265 (1096)
T KOG1859|consen  258 GLDLSYNL  265 (1096)
T ss_pred             ccchhHhh
Confidence            88888775

>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]

Probab=97.29  E-value=4.4e-05  Score=72.16  Aligned_cols=225  Identities=20%  Similarity=0.178  Sum_probs=118.9

Q ss_pred             hhhccCCCCcccEEEecCCCCCc-----cCcccCCCCcccEEecCCCCc----hhc-------chhhhhcccccEEeecc
Q 039689          189 VLQRLLNLPRLRVFSLRGYNIFE-----LPKAIENLKHLRFLDLSTTKI----EIL-------RESINTLYNLHTLLLED  252 (763)
Q Consensus       189 ~~~~~~~l~~Lr~L~L~~~~i~~-----lp~~~~~l~~L~~L~L~~~~i----~~l-------p~~~~~L~~L~~L~L~~  252 (763)
                      +...+..+..+..++||||.|..     +-..+.+-.+|++-+++.-..    ..+       .+.+-++++|+..+||+
T Consensus        22 v~eel~~~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSD  101 (388)
T COG5238          22 VVEELEMMDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSD  101 (388)
T ss_pred             HHHHHHhhcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccc
Confidence            34445557888899999998764     345567778899998886321    133       34556779999999999


Q ss_pred             cccccccccc----ccCcccccccccCCccccccccc--CC-CccCCCceeeecCcccccCcccchhhhhcCcccccceE
Q 039689          253 CRRLKKLCKD----MGNLTKLHHLNNSNVGSLEEMLM--LK-SLVHLQGTLEISRLENVKGVGDASEVQLNSKVNLKALY  325 (763)
Q Consensus       253 ~~~l~~lp~~----i~~L~~L~~L~l~~~~~l~~l~~--l~-~L~~L~~~L~~~~~~~~~~~~~~~~~~l~~l~~L~~L~  325 (763)
                      |-.-...|+.    |+.-+.|+||.+++|. +.-+..  ++ .|.+|                 +......+.+.|+...
T Consensus       102 NAfg~~~~e~L~d~is~~t~l~HL~l~NnG-lGp~aG~rigkal~~l-----------------a~nKKaa~kp~Le~vi  163 (388)
T COG5238         102 NAFGSEFPEELGDLISSSTDLVHLKLNNNG-LGPIAGGRIGKALFHL-----------------AYNKKAADKPKLEVVI  163 (388)
T ss_pred             cccCcccchHHHHHHhcCCCceeEEeecCC-CCccchhHHHHHHHHH-----------------HHHhhhccCCCceEEE
Confidence            6544455543    6677899999999987 432221  00 00000                 0111122334455444


Q ss_pred             EeeccCCCCCCccHHHHhhcCCCCCCc-eEEEeeeCCCCCCCc------cCCCCCCCceEEEEeccCCCCC----CC-CC
Q 039689          326 LQWGVRDAVEPKTETQVIDMLKPHQKL-ELTITGYGGTKFPIW------LGDSLFSKLMLLKFDNCGTCTS----LP-SV  393 (763)
Q Consensus       326 l~~~~~~~~~~~~~~~~l~~l~~l~~L-~L~~~~~~~~~~p~~------~~~~~~~~L~~L~l~~~~~~~~----l~-~l  393 (763)
                      ...|.........   .-..+.....+ .+.+..+++.  |..      .+-....+|+.|++.+|.....    +. .+
T Consensus       164 cgrNRlengs~~~---~a~~l~sh~~lk~vki~qNgIr--pegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al  238 (388)
T COG5238         164 CGRNRLENGSKEL---SAALLESHENLKEVKIQQNGIR--PEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADAL  238 (388)
T ss_pred             eccchhccCcHHH---HHHHHHhhcCceeEEeeecCcC--cchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHh
Confidence            4433222211111   11122222333 3333333221  221      1222367899999998864221    11 35


Q ss_pred             CCCCCCCcceecccCCceEeCccccCCCcCCCCCCcceeeccc
Q 039689          394 GQLPFLKDPVISGMGRVKIVGSEFYGSSCSVSFPSLETLFFVD  436 (763)
Q Consensus       394 ~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~f~~L~~L~l~~  436 (763)
                      ...+.|+.|.+.+|-.-..-..++....+...+|+|..|...+
T Consensus       239 ~~W~~lrEL~lnDClls~~G~~~v~~~f~e~~~p~l~~L~~~Y  281 (388)
T COG5238         239 CEWNLLRELRLNDCLLSNEGVKSVLRRFNEKFVPNLMPLPGDY  281 (388)
T ss_pred             cccchhhhccccchhhccccHHHHHHHhhhhcCCCccccccch
Confidence            5667788888887744332222222111123456666666655

>KOG2982 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.27  E-value=5.2e-05  Score=72.65  Aligned_cols=84  Identities=24%  Similarity=0.316  Sum_probs=53.5

Q ss_pred             CCCCcccEEEecCCCCCccC---cccCCCCcccEEecCCCCchhcchhh-hhcccccEEeeccccccc--cccccccCcc
Q 039689          194 LNLPRLRVFSLRGYNIFELP---KAIENLKHLRFLDLSTTKIEILRESI-NTLYNLHTLLLEDCRRLK--KLCKDMGNLT  267 (763)
Q Consensus       194 ~~l~~Lr~L~L~~~~i~~lp---~~~~~l~~L~~L~L~~~~i~~lp~~~-~~L~~L~~L~L~~~~~l~--~lp~~i~~L~  267 (763)
                      ..+..++.|||.+|.|+...   ....+|++|++|+|+.|.+..--... -.+.+|++|-|.+ +.+.  .....+..++
T Consensus        68 ~~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNg-T~L~w~~~~s~l~~lP  146 (418)
T KOG2982|consen   68 SSVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNG-TGLSWTQSTSSLDDLP  146 (418)
T ss_pred             HHhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEEEEcC-CCCChhhhhhhhhcch
Confidence            45667778888888877643   33467788888888887655221111 3566788888877 4432  2333466677


Q ss_pred             cccccccCCcc
Q 039689          268 KLHHLNNSNVG  278 (763)
Q Consensus       268 ~L~~L~l~~~~  278 (763)
                      .+++|+++.|.
T Consensus       147 ~vtelHmS~N~  157 (418)
T KOG2982|consen  147 KVTELHMSDNS  157 (418)
T ss_pred             hhhhhhhccch
Confidence            77777777764

>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]

Probab=97.27  E-value=4.6e-05  Score=64.39  Aligned_cols=86  Identities=14%  Similarity=0.194  Sum_probs=72.2

Q ss_pred             CcccEEEecCCCCCccCc---ccCCCCcccEEecCCCCchhcchhhh-hcccccEEeeccccccccccccccCccccccc
Q 039689          197 PRLRVFSLRGYNIFELPK---AIENLKHLRFLDLSTTKIEILRESIN-TLYNLHTLLLEDCRRLKKLCKDMGNLTKLHHL  272 (763)
Q Consensus       197 ~~Lr~L~L~~~~i~~lp~---~~~~l~~L~~L~L~~~~i~~lp~~~~-~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L  272 (763)
                      +.+-.++|+.|.+..+++   .+.+..+|...+|++|.+...|+.|. +.+.+++|++++ +.+.++|.++..++.|+.|
T Consensus        27 kE~h~ldLssc~lm~i~davy~l~~~~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~-neisdvPeE~Aam~aLr~l  105 (177)
T KOG4579|consen   27 KELHFLDLSSCQLMYIADAVYMLSKGYELTKISLSDNGFKKFPKKFTIKFPTATTLNLAN-NEISDVPEELAAMPALRSL  105 (177)
T ss_pred             HHhhhcccccchhhHHHHHHHHHhCCceEEEEecccchhhhCCHHHhhccchhhhhhcch-hhhhhchHHHhhhHHhhhc
Confidence            455678899998776654   45677888999999999999999985 556999999999 7999999999999999999


Q ss_pred             ccCCcccccccc
Q 039689          273 NNSNVGSLEEML  284 (763)
Q Consensus       273 ~l~~~~~l~~l~  284 (763)
                      +++.|. +...|
T Consensus       106 Nl~~N~-l~~~p  116 (177)
T KOG4579|consen  106 NLRFNP-LNAEP  116 (177)
T ss_pred             ccccCc-cccch
Confidence            999998 44433

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=97.17  E-value=0.00019  Score=80.79  Aligned_cols=56  Identities=23%  Similarity=0.325  Sum_probs=25.8

Q ss_pred             CCcccEEecCCCCch--hcchhhhhcccccEEeeccccccccccccccCcccccccccCC
Q 039689          219 LKHLRFLDLSTTKIE--ILRESINTLYNLHTLLLEDCRRLKKLCKDMGNLTKLHHLNNSN  276 (763)
Q Consensus       219 l~~L~~L~L~~~~i~--~lp~~~~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l~~  276 (763)
                      ++.|+.|.+++-.+.  +.-.-..+++||+.||+|+ +++..+ .++++|++|++|.+.+
T Consensus       147 LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~-TnI~nl-~GIS~LknLq~L~mrn  204 (699)
T KOG3665|consen  147 LPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISG-TNISNL-SGISRLKNLQVLSMRN  204 (699)
T ss_pred             CcccceEEecCceecchhHHHHhhccCccceeecCC-CCccCc-HHHhccccHHHHhccC
Confidence            455555555443322  2223334455555555555 344444 3355555555554443

>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]

Probab=97.11  E-value=2.9e-05  Score=76.21  Aligned_cols=62  Identities=18%  Similarity=0.230  Sum_probs=28.7

Q ss_pred             CCCceEEEEeccCCCCC----C-C-CCCCCCCCCcceecccCCceEeCccccCCCcCCCCCCcceeeccc
Q 039689          373 FSKLMLLKFDNCGTCTS----L-P-SVGQLPFLKDPVISGMGRVKIVGSEFYGSSCSVSFPSLETLFFVD  436 (763)
Q Consensus       373 ~~~L~~L~l~~~~~~~~----l-~-~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~f~~L~~L~l~~  436 (763)
                      +++|+.|++++|..-..    + . .-...|.|+.|.+.+|.....-.....  .+...-|.|+.|.+..
T Consensus       240 ~~~L~El~l~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la--~~~~ek~dL~kLnLng  307 (382)
T KOG1909|consen  240 WPHLRELNLGDCLLENEGAIAFVDALKESAPSLEVLELAGNEITRDAALALA--ACMAEKPDLEKLNLNG  307 (382)
T ss_pred             cchheeecccccccccccHHHHHHHHhccCCCCceeccCcchhHHHHHHHHH--HHHhcchhhHHhcCCc
Confidence            45667777777642111    0 0 112356677777666544322111000  0112256667776665

>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]

Probab=96.97  E-value=0.00097  Score=60.66  Aligned_cols=80  Identities=21%  Similarity=0.304  Sum_probs=59.3

Q ss_pred             CcccEEEecCCCCCccCcccCCCCcccEEecCCCCchhcchhh-hhcccccEEeeccccccccccc--cccCcccccccc
Q 039689          197 PRLRVFSLRGYNIFELPKAIENLKHLRFLDLSTTKIEILRESI-NTLYNLHTLLLEDCRRLKKLCK--DMGNLTKLHHLN  273 (763)
Q Consensus       197 ~~Lr~L~L~~~~i~~lp~~~~~l~~L~~L~L~~~~i~~lp~~~-~~L~~L~~L~L~~~~~l~~lp~--~i~~L~~L~~L~  273 (763)
                      ...-.+||++|.+..++ .|..+..|.+|.|.+|+|+.+-+.+ ..+++|+.|.|.+ +++.++-+  .+..+++|++|.
T Consensus        42 d~~d~iDLtdNdl~~l~-~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~Ltn-Nsi~~l~dl~pLa~~p~L~~Lt  119 (233)
T KOG1644|consen   42 DQFDAIDLTDNDLRKLD-NLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTN-NSIQELGDLDPLASCPKLEYLT  119 (233)
T ss_pred             cccceecccccchhhcc-cCCCccccceEEecCCcceeeccchhhhccccceEEecC-cchhhhhhcchhccCCccceee
Confidence            45567888888877663 4778888899999888888886666 4556788888888 56665532  266777888888


Q ss_pred             cCCcc
Q 039689          274 NSNVG  278 (763)
Q Consensus       274 l~~~~  278 (763)
                      +-+|.
T Consensus       120 ll~Np  124 (233)
T KOG1644|consen  120 LLGNP  124 (233)
T ss_pred             ecCCc
Confidence            87776

>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]

Probab=96.96  E-value=6.7e-05  Score=83.34  Aligned_cols=84  Identities=18%  Similarity=0.340  Sum_probs=42.0

Q ss_pred             cceeeeccCCCcccccchhhhcCCCCcceEEEecCccccccC--C-CCCCCCccEEEEccCCCCCCCchhhhcCCCCCcc
Q 039689          558 LRTVKIEDCNALESLPEAWMHNSNSSLESLKIRSCNSLVSFP--D-FALPSQLRTVTIKGCDALESLPEAWMQNSSTSLE  634 (763)
Q Consensus       558 L~~L~l~~~~~l~~l~~~~~~~~l~~L~~L~l~~c~~l~~~~--~-~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~  634 (763)
                      |+.|+++.|..++...-......+++|+.|.+.+|..++...  . ....++|++|++++|..++..........+++|+
T Consensus       245 L~~l~l~~~~~isd~~l~~l~~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~~d~~l~~~~~~c~~l~  324 (482)
T KOG1947|consen  245 LKSLDLSGCGLVTDIGLSALASRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGLTDSGLEALLKNCPNLR  324 (482)
T ss_pred             cCccchhhhhccCchhHHHHHhhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccchHHHHHHHHHhCcchh
Confidence            455555555544443333233336777777776676533321  1 2344667777777776653321111113456555


Q ss_pred             eEeeccC
Q 039689          635 SLAIDSC  641 (763)
Q Consensus       635 ~L~l~~c  641 (763)
                      .+.+..+
T Consensus       325 ~l~~~~~  331 (482)
T KOG1947|consen  325 ELKLLSL  331 (482)
T ss_pred             hhhhhhc
Confidence            5544433

>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]

Probab=96.90  E-value=0.00017  Score=80.17  Aligned_cols=106  Identities=21%  Similarity=0.380  Sum_probs=58.0

Q ss_pred             cccccCceeeccCCchhh--h---------cceeeecc-CCCcccccc--hhhhcCCCCcceEEEecCccccccCC---C
Q 039689          539 DIRSLNRLQISRCPQLIS--L---------LRTVKIED-CNALESLPE--AWMHNSNSSLESLKIRSCNSLVSFPD---F  601 (763)
Q Consensus       539 ~l~~L~~L~l~~~~~l~~--~---------L~~L~l~~-~~~l~~l~~--~~~~~~l~~L~~L~l~~c~~l~~~~~---~  601 (763)
                      ..+.|+.|.+.+|.....  .         |++|++++ |......+.  ......+++|+.|+++.|..+++..-   .
T Consensus       186 ~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~  265 (482)
T KOG1947|consen  186 SCPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSALA  265 (482)
T ss_pred             hCchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHHH
Confidence            356777777777655443  1         77777766 233322221  11222356677777776665333221   1


Q ss_pred             CCCCCccEEEEccCCCCCCCchhhhcCCCCCcceEeeccCCCc
Q 039689          602 ALPSQLRTVTIKGCDALESLPEAWMQNSSTSLESLAIDSCDSL  644 (763)
Q Consensus       602 ~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~c~~l  644 (763)
                      ...++|++|.+.+|..++...-......+++|++|+++.|..+
T Consensus       266 ~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~  308 (482)
T KOG1947|consen  266 SRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGL  308 (482)
T ss_pred             hhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccc
Confidence            2245777777766765444333333356677777777777665

>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]

Probab=96.90  E-value=6.9e-05  Score=80.40  Aligned_cols=128  Identities=23%  Similarity=0.179  Sum_probs=95.6

Q ss_pred             CcccEEEecCCCCCccCcccCCCCcccEEecCCCCchhcchhhhhcccccEEeecccccccccccc-ccCcccccccccC
Q 039689          197 PRLRVFSLRGYNIFELPKAIENLKHLRFLDLSTTKIEILRESINTLYNLHTLLLEDCRRLKKLCKD-MGNLTKLHHLNNS  275 (763)
Q Consensus       197 ~~Lr~L~L~~~~i~~lp~~~~~l~~L~~L~L~~~~i~~lp~~~~~L~~L~~L~L~~~~~l~~lp~~-i~~L~~L~~L~l~  275 (763)
                      ..|.+-+.+.|.+..+-.++.-++.|+.|||++|.++..- .+..+++|++|||++ |.++.+|.- .... +|+.|.++
T Consensus       164 n~L~~a~fsyN~L~~mD~SLqll~ale~LnLshNk~~~v~-~Lr~l~~LkhLDlsy-N~L~~vp~l~~~gc-~L~~L~lr  240 (1096)
T KOG1859|consen  164 NKLATASFSYNRLVLMDESLQLLPALESLNLSHNKFTKVD-NLRRLPKLKHLDLSY-NCLRHVPQLSMVGC-KLQLLNLR  240 (1096)
T ss_pred             hhHhhhhcchhhHHhHHHHHHHHHHhhhhccchhhhhhhH-HHHhccccccccccc-chhccccccchhhh-hheeeeec
Confidence            3567778888888888888999999999999999999885 889999999999999 689999863 2233 49999999


Q ss_pred             CcccccccccCCCccCCCceeeecCcccccCcccchhhhhcCcccccceEEeeccCC
Q 039689          276 NVGSLEEMLMLKSLVHLQGTLEISRLENVKGVGDASEVQLNSKVNLKALYLQWGVRD  332 (763)
Q Consensus       276 ~~~~l~~l~~l~~L~~L~~~L~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~  332 (763)
                      +|. ++.+-.+.+|+.|+ .|++..- -+...  .....+..+..|+.|++.+|...
T Consensus       241 nN~-l~tL~gie~LksL~-~LDlsyN-ll~~h--seL~pLwsLs~L~~L~LeGNPl~  292 (1096)
T KOG1859|consen  241 NNA-LTTLRGIENLKSLY-GLDLSYN-LLSEH--SELEPLWSLSSLIVLWLEGNPLC  292 (1096)
T ss_pred             ccH-HHhhhhHHhhhhhh-ccchhHh-hhhcc--hhhhHHHHHHHHHHHhhcCCccc
Confidence            998 88887777777777 4554331 00111  11123455678888888877543

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=96.67  E-value=0.001  Score=75.01  Aligned_cols=87  Identities=29%  Similarity=0.375  Sum_probs=67.1

Q ss_pred             hhcc-CCCCcccEEEecCCCCCc--cCcccCCCCcccEEecCCCCchhcchhhhhcccccEEeecccccccccc--cccc
Q 039689          190 LQRL-LNLPRLRVFSLRGYNIFE--LPKAIENLKHLRFLDLSTTKIEILRESINTLYNLHTLLLEDCRRLKKLC--KDMG  264 (763)
Q Consensus       190 ~~~~-~~l~~Lr~L~L~~~~i~~--lp~~~~~l~~L~~L~L~~~~i~~lp~~~~~L~~L~~L~L~~~~~l~~lp--~~i~  264 (763)
                      +..+ ..+|.||.|.+++-.+..  +..-..++++|+.||+|+++++.+ .+++.|++|++|.+.+ -.+..-.  .++-
T Consensus       140 ~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl-~GIS~LknLq~L~mrn-Le~e~~~~l~~LF  217 (699)
T KOG3665|consen  140 PKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL-SGISRLKNLQVLSMRN-LEFESYQDLIDLF  217 (699)
T ss_pred             HHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc-HHHhccccHHHHhccC-CCCCchhhHHHHh
Confidence            4445 678999999998866432  334457889999999999999998 8899999999999987 3443322  2477


Q ss_pred             CcccccccccCCcc
Q 039689          265 NLTKLHHLNNSNVG  278 (763)
Q Consensus       265 ~L~~L~~L~l~~~~  278 (763)
                      +|++|++||+|...
T Consensus       218 ~L~~L~vLDIS~~~  231 (699)
T KOG3665|consen  218 NLKKLRVLDISRDK  231 (699)
T ss_pred             cccCCCeeeccccc
Confidence            89999999998765

>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]

Probab=96.58  E-value=0.0022  Score=58.39  Aligned_cols=89  Identities=24%  Similarity=0.278  Sum_probs=69.6

Q ss_pred             hhhccCCCCcccEEEecCCCCCccCccc-CCCCcccEEecCCCCchhcc--hhhhhcccccEEeeccccccccccc----
Q 039689          189 VLQRLLNLPRLRVFSLRGYNIFELPKAI-ENLKHLRFLDLSTTKIEILR--ESINTLYNLHTLLLEDCRRLKKLCK----  261 (763)
Q Consensus       189 ~~~~~~~l~~Lr~L~L~~~~i~~lp~~~-~~l~~L~~L~L~~~~i~~lp--~~~~~L~~L~~L~L~~~~~l~~lp~----  261 (763)
                      ..+.|.+++.|.+|.+.+|+|+.+-..+ ..+++|..|.|.+|+|..+-  ..+..++.|++|.+-+| .+..-+.    
T Consensus        56 ~l~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~Ltll~N-pv~~k~~YR~y  134 (233)
T KOG1644|consen   56 KLDNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYLTLLGN-PVEHKKNYRLY  134 (233)
T ss_pred             hcccCCCccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcchhccCCccceeeecCC-chhcccCceeE
Confidence            3556788999999999999999995444 45678999999999998773  45678889999999884 4544432    


Q ss_pred             cccCcccccccccCCcc
Q 039689          262 DMGNLTKLHHLNNSNVG  278 (763)
Q Consensus       262 ~i~~L~~L~~L~l~~~~  278 (763)
                      .+..+++|+.||+.+-.
T Consensus       135 vl~klp~l~~LDF~kVt  151 (233)
T KOG1644|consen  135 VLYKLPSLRTLDFQKVT  151 (233)
T ss_pred             EEEecCcceEeehhhhh
Confidence            26788899999987654

>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=96.56  E-value=0.00092  Score=37.69  Aligned_cols=18  Identities=33%  Similarity=0.571  Sum_probs=8.4

Q ss_pred             ccEEecCCCCchhcchhh
Q 039689          222 LRFLDLSTTKIEILRESI  239 (763)
Q Consensus       222 L~~L~L~~~~i~~lp~~~  239 (763)
                      |++|||++|.++.+|++|
T Consensus         2 L~~Ldls~n~l~~ip~~~   19 (22)
T PF00560_consen    2 LEYLDLSGNNLTSIPSSF   19 (22)
T ss_dssp             ESEEEETSSEESEEGTTT
T ss_pred             ccEEECCCCcCEeCChhh
Confidence            444444444444444443

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....

>KOG2982 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.48  E-value=0.0029  Score=61.09  Aligned_cols=171  Identities=13%  Similarity=0.169  Sum_probs=100.8

Q ss_pred             cceeeeccCCCcccccchh-hhcCCCCcceEEEecCccccccCCC-CCCCCccEEEEccCCCCCCCchhhhcCCCCCcce
Q 039689          558 LRTVKIEDCNALESLPEAW-MHNSNSSLESLKIRSCNSLVSFPDF-ALPSQLRTVTIKGCDALESLPEAWMQNSSTSLES  635 (763)
Q Consensus       558 L~~L~l~~~~~l~~l~~~~-~~~~l~~L~~L~l~~c~~l~~~~~~-~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~  635 (763)
                      ++++++.+ |.++...+-. +..++|.|+.|+++.|+.-..+... ....+|++|.+.+. .+..-...-+...+|.++.
T Consensus        73 v~elDL~~-N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT-~L~w~~~~s~l~~lP~vte  150 (418)
T KOG2982|consen   73 VKELDLTG-NLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGT-GLSWTQSTSSLDDLPKVTE  150 (418)
T ss_pred             hhhhhccc-chhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEEEEcCC-CCChhhhhhhhhcchhhhh
Confidence            55555555 5555443211 2235899999999654432223222 34468888888875 3332211111167788888


Q ss_pred             EeeccCCCcccccc-----ccCCCCCcEEEEecCCCC----------CCCccceEEecCCCCCccccC-----CCCCCcC
Q 039689          636 LAIDSCDSLTYIAR-----IQLPPSLKRLIIFRCDNL----------RFNSLRKLKISGGCPDLVSSP-----RFPASLT  695 (763)
Q Consensus       636 L~l~~c~~l~~l~~-----~~~~~~L~~L~l~~c~~l----------~~~~L~~L~l~~~~~~l~~~~-----~~~~~L~  695 (763)
                      |+++.| +++.+..     ..+.+.+++|+..+|...          .|+++..+-+.. || ++...     +.++.+.
T Consensus       151 lHmS~N-~~rq~n~Dd~c~e~~s~~v~tlh~~~c~~~~w~~~~~l~r~Fpnv~sv~v~e-~P-lK~~s~ek~se~~p~~~  227 (418)
T KOG2982|consen  151 LHMSDN-SLRQLNLDDNCIEDWSTEVLTLHQLPCLEQLWLNKNKLSRIFPNVNSVFVCE-GP-LKTESSEKGSEPFPSLS  227 (418)
T ss_pred             hhhccc-hhhhhccccccccccchhhhhhhcCCcHHHHHHHHHhHHhhcccchheeeec-Cc-ccchhhcccCCCCCcch
Confidence            888877 4443322     223456777777777643          577777777755 43 11111     1345566


Q ss_pred             eEeeccCCCCccccC--CCCCCCCcCceecccCCCCccccC
Q 039689          696 ELKISDMPSLERLSS--IGENLTSLKFLDLDNCPKLKYFSK  734 (763)
Q Consensus       696 ~L~l~~~~~l~~ip~--~~~~l~~L~~L~l~~c~~L~~l~~  734 (763)
                      .|.++. +++.+..+  .+..|++|..|.+++.|-...+..
T Consensus       228 ~LnL~~-~~idswasvD~Ln~f~~l~dlRv~~~Pl~d~l~~  267 (418)
T KOG2982|consen  228 CLNLGA-NNIDSWASVDALNGFPQLVDLRVSENPLSDPLRG  267 (418)
T ss_pred             hhhhcc-cccccHHHHHHHcCCchhheeeccCCcccccccC
Confidence            777777 55555432  347899999999999998877754

>KOG0473 consensus Leucine-rich repeat protein [Function unknown]

Probab=95.85  E-value=0.00056  Score=63.38  Aligned_cols=87  Identities=16%  Similarity=0.173  Sum_probs=79.5

Q ss_pred             hccCCCCcccEEEecCCCCCccCcccCCCCcccEEecCCCCchhcchhhhhcccccEEeeccccccccccccccCccccc
Q 039689          191 QRLLNLPRLRVFSLRGYNIFELPKAIENLKHLRFLDLSTTKIEILRESINTLYNLHTLLLEDCRRLKKLCKDMGNLTKLH  270 (763)
Q Consensus       191 ~~~~~l~~Lr~L~L~~~~i~~lp~~~~~l~~L~~L~L~~~~i~~lp~~~~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~  270 (763)
                      .++..++..++||++.|++..+-..|+.++.|.-||++.|.+..+|.+++.+..++.+++.. +.....|.+++.+++++
T Consensus        36 ~ei~~~kr~tvld~~s~r~vn~~~n~s~~t~~~rl~~sknq~~~~~~d~~q~~e~~~~~~~~-n~~~~~p~s~~k~~~~k  114 (326)
T KOG0473|consen   36 REIASFKRVTVLDLSSNRLVNLGKNFSILTRLVRLDLSKNQIKFLPKDAKQQRETVNAASHK-NNHSQQPKSQKKEPHPK  114 (326)
T ss_pred             hhhhccceeeeehhhhhHHHhhccchHHHHHHHHHhccHhhHhhChhhHHHHHHHHHHHhhc-cchhhCCccccccCCcc
Confidence            34567788999999999988888889999999999999999999999999999999999988 68999999999999999


Q ss_pred             ccccCCcc
Q 039689          271 HLNNSNVG  278 (763)
Q Consensus       271 ~L~l~~~~  278 (763)
                      .++..++.
T Consensus       115 ~~e~k~~~  122 (326)
T KOG0473|consen  115 KNEQKKTE  122 (326)
T ss_pred             hhhhccCc
Confidence            99998886

>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=95.85  E-value=0.0042  Score=34.96  Aligned_cols=22  Identities=32%  Similarity=0.611  Sum_probs=18.8

Q ss_pred             cccEEEecCCCCCccCcccCCC
Q 039689          198 RLRVFSLRGYNIFELPKAIENL  219 (763)
Q Consensus       198 ~Lr~L~L~~~~i~~lp~~~~~l  219 (763)
                      +|++||+++|+++.+|++|++|
T Consensus         1 ~L~~Ldls~n~l~~ip~~~~~l   22 (22)
T PF00560_consen    1 NLEYLDLSGNNLTSIPSSFSNL   22 (22)
T ss_dssp             TESEEEETSSEESEEGTTTTT-
T ss_pred             CccEEECCCCcCEeCChhhcCC
Confidence            5899999999999999888764

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....

>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=95.82  E-value=0.0054  Score=58.49  Aligned_cols=81  Identities=23%  Similarity=0.320  Sum_probs=52.7

Q ss_pred             CCcccEEEecCCCCCccCcccCCCCcccEEecCCC--Cch-hcchhhhhcccccEEeeccccccccccc--cccCccccc
Q 039689          196 LPRLRVFSLRGYNIFELPKAIENLKHLRFLDLSTT--KIE-ILRESINTLYNLHTLLLEDCRRLKKLCK--DMGNLTKLH  270 (763)
Q Consensus       196 l~~Lr~L~L~~~~i~~lp~~~~~l~~L~~L~L~~~--~i~-~lp~~~~~L~~L~~L~L~~~~~l~~lp~--~i~~L~~L~  270 (763)
                      +..|..|++.+..++.+ ..|..|++|++|.+|.|  ++. .++.-..++++|++|++++ +.+..+..  .+..+.+|.
T Consensus        42 ~~~le~ls~~n~gltt~-~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~-Nki~~lstl~pl~~l~nL~  119 (260)
T KOG2739|consen   42 FVELELLSVINVGLTTL-TNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSG-NKIKDLSTLRPLKELENLK  119 (260)
T ss_pred             ccchhhhhhhccceeec-ccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecC-Cccccccccchhhhhcchh
Confidence            44555555555555444 34567788888888888  544 4555556668888888888 45554211  156677788


Q ss_pred             ccccCCcc
Q 039689          271 HLNNSNVG  278 (763)
Q Consensus       271 ~L~l~~~~  278 (763)
                      .|++.+|.
T Consensus       120 ~Ldl~n~~  127 (260)
T KOG2739|consen  120 SLDLFNCS  127 (260)
T ss_pred             hhhcccCC
Confidence            88888876

>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=95.79  E-value=0.0039  Score=59.45  Aligned_cols=68  Identities=21%  Similarity=0.208  Sum_probs=46.9

Q ss_pred             cCCCCcccEEecCCCCchhcchhhhhcccccEEeeccc--cccccccccccCcccccccccCCccccccccc
Q 039689          216 IENLKHLRFLDLSTTKIEILRESINTLYNLHTLLLEDC--RRLKKLCKDMGNLTKLHHLNNSNVGSLEEMLM  285 (763)
Q Consensus       216 ~~~l~~L~~L~L~~~~i~~lp~~~~~L~~L~~L~L~~~--~~l~~lp~~i~~L~~L~~L~l~~~~~l~~l~~  285 (763)
                      .-.+..|+.|++.+..++++ ..+-.|++|+.|.++.|  .....++.-...+++|++|++++|+ ++.+..
T Consensus        39 ~d~~~~le~ls~~n~gltt~-~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nk-i~~lst  108 (260)
T KOG2739|consen   39 TDEFVELELLSVINVGLTTL-TNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNK-IKDLST  108 (260)
T ss_pred             cccccchhhhhhhccceeec-ccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCc-cccccc
Confidence            44556677777777666654 23447889999999996  3334454445567999999999998 554433

>KOG2123 consensus Uncharacterized conserved protein [Function unknown]

Probab=95.74  E-value=0.0008  Score=64.12  Aligned_cols=80  Identities=23%  Similarity=0.290  Sum_probs=54.2

Q ss_pred             CCcccEEEecCCCCCccCcccCCCCcccEEecCCCCchhcchhhhhcccccEEeeccccccccccc--cccCcccccccc
Q 039689          196 LPRLRVFSLRGYNIFELPKAIENLKHLRFLDLSTTKIEILRESINTLYNLHTLLLEDCRRLKKLCK--DMGNLTKLHHLN  273 (763)
Q Consensus       196 l~~Lr~L~L~~~~i~~lp~~~~~l~~L~~L~L~~~~i~~lp~~~~~L~~L~~L~L~~~~~l~~lp~--~i~~L~~L~~L~  273 (763)
                      +.+.+-|+..||.+.++ +...+|+.|++|.||-|.|+++ ..+...++|+.|.|.. +.+..+-+  .+.+|++|+.|.
T Consensus        18 l~~vkKLNcwg~~L~DI-sic~kMp~lEVLsLSvNkIssL-~pl~rCtrLkElYLRk-N~I~sldEL~YLknlpsLr~LW   94 (388)
T KOG2123|consen   18 LENVKKLNCWGCGLDDI-SICEKMPLLEVLSLSVNKISSL-APLQRCTRLKELYLRK-NCIESLDELEYLKNLPSLRTLW   94 (388)
T ss_pred             HHHhhhhcccCCCccHH-HHHHhcccceeEEeeccccccc-hhHHHHHHHHHHHHHh-cccccHHHHHHHhcCchhhhHh
Confidence            45566677777777665 3345777788888887777777 4567777777777777 45555532  256777777777


Q ss_pred             cCCcc
Q 039689          274 NSNVG  278 (763)
Q Consensus       274 l~~~~  278 (763)
                      |..|.
T Consensus        95 L~ENP   99 (388)
T KOG2123|consen   95 LDENP   99 (388)
T ss_pred             hccCC
Confidence            77665

>KOG2123 consensus Uncharacterized conserved protein [Function unknown]

Probab=95.03  E-value=0.0031  Score=60.29  Aligned_cols=79  Identities=28%  Similarity=0.339  Sum_probs=63.3

Q ss_pred             CCCCcccEEEecCCCCCccCcccCCCCcccEEecCCCCchhcc--hhhhhcccccEEeecccccccccccc-----ccCc
Q 039689          194 LNLPRLRVFSLRGYNIFELPKAIENLKHLRFLDLSTTKIEILR--ESINTLYNLHTLLLEDCRRLKKLCKD-----MGNL  266 (763)
Q Consensus       194 ~~l~~Lr~L~L~~~~i~~lp~~~~~l~~L~~L~L~~~~i~~lp--~~~~~L~~L~~L~L~~~~~l~~lp~~-----i~~L  266 (763)
                      .+++.|.+|.|+-|.|+.+ ..+.++++|+.|.|..|.|..+-  ..+.+|++|++|-|..|.-...-+..     +.-|
T Consensus        38 ~kMp~lEVLsLSvNkIssL-~pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~LWL~ENPCc~~ag~nYR~~VLR~L  116 (388)
T KOG2123|consen   38 EKMPLLEVLSLSVNKISSL-APLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTLWLDENPCCGEAGQNYRRKVLRVL  116 (388)
T ss_pred             HhcccceeEEeeccccccc-hhHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhHhhccCCcccccchhHHHHHHHHc
Confidence            6789999999999999988 55889999999999999999874  46789999999999887655554432     3445


Q ss_pred             ccccccc
Q 039689          267 TKLHHLN  273 (763)
Q Consensus       267 ~~L~~L~  273 (763)
                      ++|+.||
T Consensus       117 PnLkKLD  123 (388)
T KOG2123|consen  117 PNLKKLD  123 (388)
T ss_pred             ccchhcc
Confidence            6666554

>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D

Probab=94.58  E-value=0.021  Score=29.73  Aligned_cols=14  Identities=50%  Similarity=0.714  Sum_probs=4.6

Q ss_pred             ccEEecCCCCchhc
Q 039689          222 LRFLDLSTTKIEIL  235 (763)
Q Consensus       222 L~~L~L~~~~i~~l  235 (763)
                      |+.|+|++|+++++
T Consensus         3 L~~L~l~~n~L~~l   16 (17)
T PF13504_consen    3 LRTLDLSNNRLTSL   16 (17)
T ss_dssp             -SEEEETSS--SSE
T ss_pred             cCEEECCCCCCCCC
Confidence            44444444444333

...

>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D

Probab=93.72  E-value=0.047  Score=28.40  Aligned_cols=17  Identities=35%  Similarity=0.679  Sum_probs=11.6

Q ss_pred             CcccEEEecCCCCCccC
Q 039689          197 PRLRVFSLRGYNIFELP  213 (763)
Q Consensus       197 ~~Lr~L~L~~~~i~~lp  213 (763)
                      ++||+|++++|+++.+|
T Consensus         1 ~~L~~L~l~~n~L~~lP   17 (17)
T PF13504_consen    1 PNLRTLDLSNNRLTSLP   17 (17)
T ss_dssp             TT-SEEEETSS--SSE-
T ss_pred             CccCEEECCCCCCCCCc
Confidence            47999999999998876

...

>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily

Probab=91.50  E-value=0.15  Score=30.02  Aligned_cols=20  Identities=40%  Similarity=0.517  Sum_probs=12.4

Q ss_pred             CCcccEEecCCCCchhcchh
Q 039689          219 LKHLRFLDLSTTKIEILRES  238 (763)
Q Consensus       219 l~~L~~L~L~~~~i~~lp~~  238 (763)
                      |++|++|+|++|.|+.+|..
T Consensus         1 L~~L~~L~L~~N~l~~lp~~   20 (26)
T smart00369        1 LPNLRELDLSNNQLSSLPPG   20 (26)
T ss_pred             CCCCCEEECCCCcCCcCCHH
Confidence            35566666666666666544

>smart00370 LRR Leucine-rich repeats, outliers

Probab=91.50  E-value=0.15  Score=30.02  Aligned_cols=20  Identities=40%  Similarity=0.517  Sum_probs=12.4

Q ss_pred             CCcccEEecCCCCchhcchh
Q 039689          219 LKHLRFLDLSTTKIEILRES  238 (763)
Q Consensus       219 l~~L~~L~L~~~~i~~lp~~  238 (763)
                      |++|++|+|++|.|+.+|..
T Consensus         1 L~~L~~L~L~~N~l~~lp~~   20 (26)
T smart00370        1 LPNLRELDLSNNQLSSLPPG   20 (26)
T ss_pred             CCCCCEEECCCCcCCcCCHH
Confidence            35566666666666666544

>PRK04841 transcriptional regulator MalT; Provisional

Probab=90.61  E-value=1.4  Score=53.19  Aligned_cols=124  Identities=17%  Similarity=0.257  Sum_probs=80.4

Q ss_pred             HHHHHHHHHcCCChHHHHHHHHHhcCCCChHHHHHHHhhhcccccC-CccChHHHHH-HHHhcCCHhHHHHhhhhcccCC
Q 039689           24 EVGQKIAMKCKGLPLAAKTLGGLLRGKDDPKDWENVLKTEVWDLAD-DKCDIIPALR-VSYHFLPPQLKQCFAYCSLFPK  101 (763)
Q Consensus        24 ~~~~~i~~~c~GlPlal~~~g~~L~~~~~~~~W~~~l~~~~~~~~~-~~~~i~~~l~-~Sy~~L~~~~k~~fl~~~~fp~  101 (763)
                      +.+.++.+.|+|.|+++..++..+++.+...  ......    ... +...+...+. -.|+.||++.+..++..|+++ 
T Consensus       206 ~~~~~l~~~t~Gwp~~l~l~~~~~~~~~~~~--~~~~~~----~~~~~~~~~~~~l~~~v~~~l~~~~~~~l~~~a~~~-  278 (903)
T PRK04841        206 AESSRLCDDVEGWATALQLIALSARQNNSSL--HDSARR----LAGINASHLSDYLVEEVLDNVDLETRHFLLRCSVLR-  278 (903)
T ss_pred             HHHHHHHHHhCChHHHHHHHHHHHhhCCCch--hhhhHh----hcCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcccc-
Confidence            4567899999999999999998876542210  011111    111 1234555544 348999999999999999986 


Q ss_pred             CCccCHHHHHHHHHHcCCcccCCCcccHHHHHHHHHHHHHHCCCccc-ccCCCCcceechhHHHHHHHHh
Q 039689          102 DHEFQKEQIILLWAAEGFLHQENSKRKMEDLGREFVEELHSRSLFHQ-STYDASRFVMHDLINDLTRWAA  170 (763)
Q Consensus       102 ~~~i~~~~li~~w~~~g~~~~~~~~~~~~~~~~~~~~~L~~~~ll~~-~~~~~~~~~mhdli~~~~~~~~  170 (763)
                        .++.+ +...-.  |   .        +.+...+++|.+++++.. .+++..++..|++++++.+...
T Consensus       279 --~~~~~-l~~~l~--~---~--------~~~~~~L~~l~~~~l~~~~~~~~~~~yr~H~L~r~~l~~~l  332 (903)
T PRK04841        279 --SMNDA-LIVRVT--G---E--------ENGQMRLEELERQGLFIQRMDDSGEWFRYHPLFASFLRHRC  332 (903)
T ss_pred             --cCCHH-HHHHHc--C---C--------CcHHHHHHHHHHCCCeeEeecCCCCEEehhHHHHHHHHHHH
Confidence              23432 222111  1   1        124678999999999764 3333457889999999987654

>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A

Probab=90.18  E-value=0.74  Score=40.09  Aligned_cols=54  Identities=22%  Similarity=0.370  Sum_probs=23.4

Q ss_pred             CCCcceEEEecCccccccCC--CCCCCCccEEEEccCCCCCCCchhhhcCCCCCcceEeec
Q 039689          581 NSSLESLKIRSCNSLVSFPD--FALPSQLRTVTIKGCDALESLPEAWMQNSSTSLESLAID  639 (763)
Q Consensus       581 l~~L~~L~l~~c~~l~~~~~--~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~  639 (763)
                      +++|+.+.+.+  .+..++.  +...++|+.+.+.+.  +..++...+ ..+++++.+.+.
T Consensus        11 ~~~l~~i~~~~--~~~~I~~~~F~~~~~l~~i~~~~~--~~~i~~~~F-~~~~~l~~i~~~   66 (129)
T PF13306_consen   11 CSNLESITFPN--TIKKIGENAFSNCTSLKSINFPNN--LTSIGDNAF-SNCKSLESITFP   66 (129)
T ss_dssp             -TT--EEEETS--T--EE-TTTTTT-TT-SEEEESST--TSCE-TTTT-TT-TT-EEEEET
T ss_pred             CCCCCEEEECC--CeeEeChhhccccccccccccccc--ccccceeee-eccccccccccc
Confidence            45666666642  2444443  344556666666552  555554443 455566666664

>KOG3864 consensus Uncharacterized conserved protein [Function unknown]

Probab=90.16  E-value=0.043  Score=50.37  Aligned_cols=45  Identities=13%  Similarity=0.321  Sum_probs=22.4

Q ss_pred             CCCCCccEEEEccCCCCCCCchhhhcCCCCCcceEeeccCCCccc
Q 039689          602 ALPSQLRTVTIKGCDALESLPEAWMQNSSTSLESLAIDSCDSLTY  646 (763)
Q Consensus       602 ~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~  646 (763)
                      ..+++++.|.+.+|..+....-..+....++|+.|+|++|+.|++
T Consensus       122 ~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~  166 (221)
T KOG3864|consen  122 RDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITD  166 (221)
T ss_pred             hccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeech
Confidence            334455555555555544444333334455555555555555544

>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A

Probab=89.65  E-value=1.3  Score=38.41  Aligned_cols=81  Identities=15%  Similarity=0.322  Sum_probs=46.8

Q ss_pred             ccCCCCcccEEEecCCCCCccC-cccCCCCcccEEecCCCCchhcc-hhhhhcccccEEeecccccccccccc-ccCccc
Q 039689          192 RLLNLPRLRVFSLRGYNIFELP-KAIENLKHLRFLDLSTTKIEILR-ESINTLYNLHTLLLEDCRRLKKLCKD-MGNLTK  268 (763)
Q Consensus       192 ~~~~l~~Lr~L~L~~~~i~~lp-~~~~~l~~L~~L~L~~~~i~~lp-~~~~~L~~L~~L~L~~~~~l~~lp~~-i~~L~~  268 (763)
                      .|.++.+|+.+.+.. .+..++ ..|..+.+|+.+.+..+ +..++ ..|.+..+|+.+.+.+  .+..++.. +...++
T Consensus         7 ~F~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~--~~~~i~~~~F~~~~~   82 (129)
T PF13306_consen    7 AFYNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN--NLKSIGDNAFSNCTN   82 (129)
T ss_dssp             TTTT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS--TT-EE-TTTTTT-TT
T ss_pred             HHhCCCCCCEEEECC-CeeEeChhhccccccccccccccc-ccccceeeeecccccccccccc--ccccccccccccccc
Confidence            356777888888874 566674 56788888888888775 66664 4567777888888865  44445443 666788


Q ss_pred             ccccccCC
Q 039689          269 LHHLNNSN  276 (763)
Q Consensus       269 L~~L~l~~  276 (763)
                      |+.+++..
T Consensus        83 l~~i~~~~   90 (129)
T PF13306_consen   83 LKNIDIPS   90 (129)
T ss_dssp             ECEEEETT
T ss_pred             ccccccCc
Confidence            88887754

>KOG3864 consensus Uncharacterized conserved protein [Function unknown]

Probab=89.26  E-value=0.12  Score=47.53  Aligned_cols=85  Identities=22%  Similarity=0.344  Sum_probs=46.6

Q ss_pred             CcccEEecCCCCchhc-chhhhhcccccEEeecccccccccc-cccc-CcccccccccCCcccccccc--cCCCccCCCc
Q 039689          220 KHLRFLDLSTTKIEIL-RESINTLYNLHTLLLEDCRRLKKLC-KDMG-NLTKLHHLNNSNVGSLEEML--MLKSLVHLQG  294 (763)
Q Consensus       220 ~~L~~L~L~~~~i~~l-p~~~~~L~~L~~L~L~~~~~l~~lp-~~i~-~L~~L~~L~l~~~~~l~~l~--~l~~L~~L~~  294 (763)
                      ..++..|-+++.|... -+.+.+++.++.|.+.+|..+..-- +.++ -.++|+.|++++|..+++-.  -+..+++|+ 
T Consensus       101 ~~IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr-  179 (221)
T KOG3864|consen  101 VKIEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLR-  179 (221)
T ss_pred             ceEEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhhH-
Confidence            4456666666666533 3455666667777777766554321 1122 23577777777776555422  244555555 


Q ss_pred             eeeecCccccc
Q 039689          295 TLEISRLENVK  305 (763)
Q Consensus       295 ~L~~~~~~~~~  305 (763)
                      .|.+.++..+.
T Consensus       180 ~L~l~~l~~v~  190 (221)
T KOG3864|consen  180 RLHLYDLPYVA  190 (221)
T ss_pred             HHHhcCchhhh
Confidence            55555554443

>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]

Probab=88.00  E-value=0.47  Score=45.78  Aligned_cols=46  Identities=26%  Similarity=0.377  Sum_probs=34.0

Q ss_pred             hhhccCCCCcccEEEecCCCCCc-cC----cccCCCCcccEEecCCCCchh
Q 039689          189 VLQRLLNLPRLRVFSLRGYNIFE-LP----KAIENLKHLRFLDLSTTKIEI  234 (763)
Q Consensus       189 ~~~~~~~l~~Lr~L~L~~~~i~~-lp----~~~~~l~~L~~L~L~~~~i~~  234 (763)
                      +.+.+.+|++|...+||.|.+.. .|    +-+.+-+.|.+|.+++|.+..
T Consensus        84 Ll~aLlkcp~l~~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~NnGlGp  134 (388)
T COG5238          84 LLKALLKCPRLQKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNNGLGP  134 (388)
T ss_pred             HHHHHhcCCcceeeeccccccCcccchHHHHHHhcCCCceeEEeecCCCCc
Confidence            55666788999999999888653 33    445677888888888887653

>KOG0473 consensus Leucine-rich repeat protein [Function unknown]

Probab=86.89  E-value=0.061  Score=50.35  Aligned_cols=83  Identities=23%  Similarity=0.272  Sum_probs=68.5

Q ss_pred             CCccC-cccCCCCcccEEecCCCCchhcchhhhhcccccEEeeccccccccccccccCcccccccccCCccccccccc-C
Q 039689          209 IFELP-KAIENLKHLRFLDLSTTKIEILRESINTLYNLHTLLLEDCRRLKKLCKDMGNLTKLHHLNNSNVGSLEEMLM-L  286 (763)
Q Consensus       209 i~~lp-~~~~~l~~L~~L~L~~~~i~~lp~~~~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~l~~-l  286 (763)
                      ++.+| ..+.....-++||++.|++..+-..|+.++.|..||++. +.+..+|.+++.+..++++++..|. ....|. .
T Consensus        30 ~s~~~v~ei~~~kr~tvld~~s~r~vn~~~n~s~~t~~~rl~~sk-nq~~~~~~d~~q~~e~~~~~~~~n~-~~~~p~s~  107 (326)
T KOG0473|consen   30 LSEIPVREIASFKRVTVLDLSSNRLVNLGKNFSILTRLVRLDLSK-NQIKFLPKDAKQQRETVNAASHKNN-HSQQPKSQ  107 (326)
T ss_pred             hcccchhhhhccceeeeehhhhhHHHhhccchHHHHHHHHHhccH-hhHhhChhhHHHHHHHHHHHhhccc-hhhCCccc
Confidence            44555 567788899999999999999999999999999999998 7899999999999999999998886 555554 3


Q ss_pred             CCccCCC
Q 039689          287 KSLVHLQ  293 (763)
Q Consensus       287 ~~L~~L~  293 (763)
                      +.+++++
T Consensus       108 ~k~~~~k  114 (326)
T KOG0473|consen  108 KKEPHPK  114 (326)
T ss_pred             cccCCcc
Confidence            4444444

>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily

Probab=85.51  E-value=0.58  Score=27.41  Aligned_cols=20  Identities=35%  Similarity=0.607  Sum_probs=17.5

Q ss_pred             CCcccEEEecCCCCCccCcc
Q 039689          196 LPRLRVFSLRGYNIFELPKA  215 (763)
Q Consensus       196 l~~Lr~L~L~~~~i~~lp~~  215 (763)
                      +++|++|+|++|+++.+|..
T Consensus         1 L~~L~~L~L~~N~l~~lp~~   20 (26)
T smart00369        1 LPNLRELDLSNNQLSSLPPG   20 (26)
T ss_pred             CCCCCEEECCCCcCCcCCHH
Confidence            46899999999999999854

>smart00370 LRR Leucine-rich repeats, outliers

Probab=85.51  E-value=0.58  Score=27.41  Aligned_cols=20  Identities=35%  Similarity=0.607  Sum_probs=17.5

Q ss_pred             CCcccEEEecCCCCCccCcc
Q 039689          196 LPRLRVFSLRGYNIFELPKA  215 (763)
Q Consensus       196 l~~Lr~L~L~~~~i~~lp~~  215 (763)
                      +++|++|+|++|+++.+|..
T Consensus         1 L~~L~~L~L~~N~l~~lp~~   20 (26)
T smart00370        1 LPNLRELDLSNNQLSSLPPG   20 (26)
T ss_pred             CCCCCEEECCCCcCCcCCHH
Confidence            46899999999999999854

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	763
1z6t_A	591	APAF-1, apoptotic protease activating factor 1; ca	1e-47
2a5y_B	549	CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis	2e-36
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	3e-19
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-15
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	6e-08
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	6e-13
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	1e-11
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	2e-11
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	4e-11
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	4e-10
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	7e-10
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	2e-08
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	6e-07
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	3e-06
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	1e-04
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	1e-12
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	9e-11
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	2e-11
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	6e-10
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	2e-05
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	2e-11
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	5e-09
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	7e-08
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	7e-06
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	1e-05
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	4e-05
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	1e-10
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	4e-08
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	4e-06
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	1e-05
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	4e-10
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	6e-08
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	1e-05
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	3e-09
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	5e-07
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	4e-09
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	7e-07
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	1e-06
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	5e-04
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	5e-09
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	2e-07
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	5e-06
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	2e-05
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	6e-09
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	1e-08
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	2e-08
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	3e-06
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	3e-05
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	2e-07
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	2e-07
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	3e-07
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	4e-06
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	4e-05
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	1e-04
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	2e-04
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	2e-07
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	1e-06
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	3e-07
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	4e-06
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	1e-04
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	4e-07
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	1e-06
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	2e-05
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	5e-05
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	1e-04
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	1e-06
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	1e-06
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	3e-05
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	2e-06
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	3e-06
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	1e-05
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	3e-06
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	6e-06
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	2e-04
1o6v_A	466	Internalin A; bacterial infection, extracellular r	4e-06
1o6v_A	466	Internalin A; bacterial infection, extracellular r	5e-06
1o6v_A	466	Internalin A; bacterial infection, extracellular r	2e-05
1o6v_A	466	Internalin A; bacterial infection, extracellular r	3e-05
1o6v_A	466	Internalin A; bacterial infection, extracellular r	7e-05
1o6v_A	466	Internalin A; bacterial infection, extracellular r	2e-04
1o6v_A	466	Internalin A; bacterial infection, extracellular r	6e-04
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	4e-06
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	5e-06
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	2e-05
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	4e-05
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	5e-06
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	1e-05
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	5e-06
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	9e-05
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	1e-04
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	5e-06
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	6e-06
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	5e-06
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	7e-06
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	1e-04
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	3e-04
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	1e-05
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	3e-05
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	3e-05
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	4e-05
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	8e-04
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	3e-05
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	3e-04
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	4e-05
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	4e-05
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	7e-05
3sfz_A	1249	APAF-1, apoptotic peptidase activating factor 1; a	7e-05
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	1e-04
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	1e-04
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	1e-04
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	2e-04
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	2e-04
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	1e-04
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	2e-04
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	3e-04
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	5e-04
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	6e-04
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	9e-04

>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens} Length = 591

 Score =  177 bits (450), Expect = 1e-47
 Identities = 45/286 (15%), Positives = 102/286 (35%), Gaps = 33/286 (11%)

Query: 19  HQSLKEVGQKIAMKCKGLPLAAKTLGGLLRGKDD-PKDWENVLKTEVW-----DLADDKC 72
              L E    I  +CKG PL    +G LLR   +  + +   L+ + +       + D  
Sbjct: 303 KADLPEQAHSIIKECKGSPLVVSLIGALLRDFPNRWEYYLKQLQNKQFKRIRKSSSYDYE 362

Query: 73  DIIPALRVSYHFLPPQLKQCFAYCSLFPKDHEFQKEQIILLWAAEGFLHQENSKRKMEDL 132
            +  A+ +S   L   +K  +   S+  KD +   + + +LW  E             + 
Sbjct: 363 ALDEAMSISVEMLREDIKDYYTDLSILQKDVKVPTKVLCILWDME------------TEE 410

Query: 133 GREFVEELHSRSLFHQSTYD-ASRFVMHDLINDLTRWAAGETCFRMEDTPE---GERRQN 188
             + ++E  ++SL        + R+ +HDL  D       + C +++D  +    + ++ 
Sbjct: 411 VEDILQEFVNKSLLFCDRNGKSFRYYLHDLQVDF---LTEKNCSQLQDLHKKIITQFQRY 467

Query: 189 VLQRLLNLPRLRVFSLRGYNIFELPKAIENLKHLRFL----DLSTTKIEILRESINTLYN 244
                L+  +        +  + +  A +  K L  L    D    K E++    + ++ 
Sbjct: 468 HQPHTLSPDQEDCMYWYNFLAYHMASA-KMHKELCALMFSLDWIKAKTELVG-PAHLIHE 525

Query: 245 LHTLLLEDCRRLKKLCKDMGNLTKL--HHLNNSNVGSLEEMLMLKS 288
                     +   + ++      L  H L      ++ ++ + + 
Sbjct: 526 FVEYRHILDEKDCAVSENFQEFLSLNGHLLGRQPFPNIVQLGLCEP 571

>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A* Length = 549

 Score =  143 bits (363), Expect = 2e-36
 Identities = 25/190 (13%), Positives = 55/190 (28%), Gaps = 18/190 (9%)

Query: 15  SLNMHQSLKEVGQKIAMKCKGLPLAAKTLGGLLRGKDDPKDWENVLKTEVWDLADDKC-- 72
            + + +  ++V  K      G P            K   K  +   K E   L   +C  
Sbjct: 308 PMPVGEKEEDVLNKTIELSSGNPATLMMFFKSCEPKTFEKMAQLNNKLESRGLVGVECIT 367

Query: 73  -----DIIPALRVSYHFLPPQLKQCFAYCSLFPKDHEFQKEQIILLWAAEGFLHQENSKR 127
                 +  AL+     L  + +   A+  + P   +   +    +   +   ++E    
Sbjct: 368 PYSYKSLAMALQRCVEVLSDEDRSALAFAVVMPPGVDIPVKLWSCVIPVDICSNEEEQ-- 425

Query: 128 KMEDLGREFVEELHSRSLFHQS-TYDASRFVMHDLINDLTRWAAGETCFRMEDTPEGERR 186
            ++D   + ++ L  R             F +  +I+   +                   
Sbjct: 426 -LDDEVADRLKRLSKRGALLSGKRMPVLTFKIDHIIHMFLKHVVDAQTIA-------NGI 477

Query: 187 QNVLQRLLNL 196
             + QRLL +
Sbjct: 478 SILEQRLLEI 487

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 92.2 bits (228), Expect = 3e-19
 Identities = 50/306 (16%), Positives = 98/306 (32%), Gaps = 64/306 (20%)

Query: 33  CKGLPLAAKTLGGLLRGKDDPKDWENVLKTEVWDLADDKCDIIPALRVSYHFL-PPQLKQ 91
               P     +   +R  D    W+N        L          +  S + L P + ++
Sbjct: 323 LTTNPRRLSIIAESIR--DGLATWDNWKHVNCDKLTT-------IIESSLNVLEPAEYRK 373

Query: 92  CFAYCSLFPKDHEFQKEQIILLWAAEGFLHQENSKRKMEDLGREFVEELHSRSLFHQSTY 151
            F   S+FP         + L+W        +  K  +       V +LH  SL  +   
Sbjct: 374 MFDRLSVFPPSAHIPTILLSLIW-------FDVIKSDVMV----VVNKLHKYSLVEKQ-P 421

Query: 152 DASRFVMHDLINDLTRWAAGETCFRMEDTPEGERRQNVLQRLLNLPR------LRVFSLR 205
             S   +  +  +L          ++E+     R   ++    N+P+      L    L 
Sbjct: 422 KESTISIPSIYLELKV--------KLENEYALHRS--IVDH-YNIPKTFDSDDLIPPYLD 470

Query: 206 GYNIFE-----LPKA--IENLKHLR--FLDLS--TTKIEILRESINTLYNLHTLLLEDCR 254
            Y  +      L      E +   R  FLD      KI     + N   ++   L    +
Sbjct: 471 QY-FYSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQ-QLK 528

Query: 255 RLKK-LCKDMGNLTKLHHLNNSNVGSLEEMLML--KSLVHLQGT--LEISRLENVKGVGD 309
             K  +C +     +L       V ++ + L    ++L+  + T  L I+ +   + + +
Sbjct: 529 FYKPYICDNDPKYERL-------VNAILDFLPKIEENLICSKYTDLLRIALMAEDEAIFE 581

Query: 310 ASEVQL 315
            +  Q+
Sbjct: 582 EAHKQV 587

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 80.3 bits (197), Expect = 2e-15
 Identities = 115/682 (16%), Positives = 196/682 (28%), Gaps = 233/682 (34%)

Query: 147 HQSTY-DASRFVMHDLINDLTRWAAGETCFRMEDTPEGERRQNVLQRLLNLPRLRVFSLR 205
           HQ  Y D         +++         C  ++D P+    +  +  ++           
Sbjct: 14  HQYQYKDILSVFEDAFVDNFD-------CKDVQDMPKSILSKEEIDHIIMSKDA---VSG 63

Query: 206 GYNIFELPKAIENLKHLRFL-DLSTTKIEILRESINTLYN---LHTLLLEDCRRLKKLCK 261
              +F    + +     +F+ ++     + L   I T      + T +  + R   +L  
Sbjct: 64  TLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQR--DRLYN 121

Query: 262 DMGNLTKLHHLNNSNVGSLEEMLMLKS-LVHLQGTLEISRLENVKGVGDASEVQLNSKVN 320
           D     K       NV  L+  L L+  L+ L+    +  ++ V G G         K  
Sbjct: 122 DNQVFAKY------NVSRLQPYLKLRQALLELRPAKNVL-IDGVLGSG---------KTW 165

Query: 321 LKALYLQWGVRDAVEPKTETQVIDMLKPHQKLELTITGYGGTKFPI-WLGDSLFSKLMLL 379
           +                    V    K   K++          F I WL           
Sbjct: 166 VAL-----------------DVCLSYKVQCKMD----------FKIFWL----------- 187

Query: 380 KFDNCGTCTSLPSVGQ-LPFLKDPVISGMGRVKIVGSEFYGSSCSVSFPSLETLFFVDIC 438
              NC +  ++  + Q L +  DP               + S    S      L    I 
Sbjct: 188 NLKNCNSPETVLEMLQKLLYQIDPN--------------WTSRSDHSSN--IKLRIHSIQ 231

Query: 439 SKLQGTLPERLLLLEKLNIFRCEQLLVTLQCLPALRELE----ID----GCKGVVLS--- 487
           ++L+     RLL  +      C  LLV       L  ++     +     CK ++ +   
Sbjct: 232 AELR-----RLLKSKPYE--NC--LLV-------LLNVQNAKAWNAFNLSCKILLTTRFK 275

Query: 488 SPTDLSSLKLVHSRDMAKEVFEQGLPKLERLEIQHVREQTYLWRSETRLPQDIRSLNRLQ 547
             TD   L    +  ++ +     L   E   +       YL      LP+++ + N   
Sbjct: 276 QVTD--FLSAATTTHISLDHHSMTLTPDEVKSLL----LKYLDCRPQDLPREVLTTN--- 326

Query: 548 ISRCPQLISLLRTVKIEDCNALESLPEAWMHNSN--------SSLESLK---IRSC-NSL 595
               P+ +S++     +     ++    W H +         SSL  L+    R   + L
Sbjct: 327 ----PRRLSIIAESIRDGLATWDN----WKHVNCDKLTTIIESSLNVLEPAEYRKMFDRL 378

Query: 596 VSFP-DFALPSQLRTVTIKGCDALESLPEAWMQNSSTSLE---------SLAI-DSCDSL 644
             FP    +P+ L          L  +   W     + +          SL      +S 
Sbjct: 379 SVFPPSAHIPTIL----------LSLI---WFDVIKSDVMVVVNKLHKYSLVEKQPKEST 425

Query: 645 TYIARIQL--------PPSLKRLII--------FRCDNL--------------------- 667
             I  I L          +L R I+        F  D+L                     
Sbjct: 426 ISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIE 485

Query: 668 ---RFNSLRKL---------KISGGCPDLVSSPRFPASLTELK-----ISDM-PSLER-- 707
              R    R +         KI        +S     +L +LK     I D  P  ER  
Sbjct: 486 HPERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQLKFYKPYICDNDPKYERLV 545

Query: 708 ------LSSIGENLTSLKFLDL 723
                 L  I ENL   K+ DL
Sbjct: 546 NAILDFLPKIEENLICSKYTDL 567

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 55.6 bits (133), Expect = 6e-08
 Identities = 69/414 (16%), Positives = 125/414 (30%), Gaps = 114/414 (27%)

Query: 1   MHWECYQKMTVCVCS-----LNMHQSL-KEVGQKIAMKCKG---LPL----AAKTLGGLL 47
           + W     + +  C+     L M Q L  ++      +      + L        L  LL
Sbjct: 184 IFW-----LNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLL 238

Query: 48  RGKDDPK-----DWENVLKTEVWDLADDKC------------DIIPALRVSYHFLPPQLK 90
           + K            NV   + W+  +  C            D + A   ++  L     
Sbjct: 239 KSKPYENCLLVLL--NVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSM 296

Query: 91  QCFAYCSLFPKDHEFQKEQIILLWAAEGFLHQENSKRKMEDLGRE-----------FVEE 139
                      D   + + ++L +             + +DL RE             E 
Sbjct: 297 -------TLTPD---EVKSLLLKYL----------DCRPQDLPREVLTTNPRRLSIIAES 336

Query: 140 LHSRSLFHQSTYDASRFVMHDLINDLTRWAAGETCFRMEDTPEGERRQN-----VLQRLL 194
           +        +T+D  + V  D +  +      E+   + +    E R+      V     
Sbjct: 337 IRD----GLATWDNWKHVNCDKLTTII-----ESSLNVLEPA--EYRKMFDRLSVFPPSA 385

Query: 195 NLPRLRVFSLRGYNIFELPKAIENLKHLRFL---DLSTTKIEI------LRESINTLYNL 245
           ++P + +  +    I      + N  H   L       + I I      L+  +   Y L
Sbjct: 386 HIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYAL 445

Query: 246 HTLLLEDCRRLKKLCKDMGNLTKL-----------HHLNNSNVGSLEEMLMLKSLVHLQ- 293
           H  +++     K    D  +L              HHL N       E + L  +V L  
Sbjct: 446 HRSIVDHYNIPKTFDSD--DLIPPYLDQYFYSHIGHHLKNIE---HPERMTLFRMVFLDF 500

Query: 294 GTLEISRLENVKGVGDASEVQLNSKVNLKALYLQWGVRDAVEPKTETQVIDMLK 347
             LE  ++ +     +AS   LN+   LK  Y  +   +  +PK E  V  +L 
Sbjct: 501 RFLE-QKIRHDSTAWNASGSILNTLQQLK-FYKPYICDN--DPKYERLVNAILD 550

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 69.6 bits (171), Expect = 6e-13
 Identities = 29/123 (23%), Positives = 47/123 (38%), Gaps = 4/123 (3%)

Query: 174 CFRMEDTPEGERRQNVLQRLLNLPRLRVFSLRGYNIFELPKAIENLKHLRFLDLSTTKIE 233
           C  + + PE     +       L  L+   L    I  LP +I NL++L+ L +  + + 
Sbjct: 160 CPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIRSLPASIANLQNLKSLKIRNSPLS 219

Query: 234 ILRESINTLYNLHTLLLEDCRRLKKLCKDMGNLTKLHHLNNSNVGSL----EEMLMLKSL 289
            L  +I+ L  L  L L  C  L+      G    L  L   +  +L     ++  L  L
Sbjct: 220 ALGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQL 279

Query: 290 VHL 292
             L
Sbjct: 280 EKL 282

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 65.4 bits (160), Expect = 1e-11
 Identities = 28/103 (27%), Positives = 41/103 (39%), Gaps = 5/103 (4%)

Query: 195 NLPRLRVFSLRGYNIFELPKAIENLKHLRFLDLS-TTKIEILRESINTLYNLHTLLLEDC 253
           NL  L+   +R   +  L  AI +L  L  LDL   T +            L  L+L+DC
Sbjct: 204 NLQNLKSLKIRNSPLSALGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDC 263

Query: 254 RRLKKLCKDMGNLTKLHHL---NNSNVGSL-EEMLMLKSLVHL 292
             L  L  D+  LT+L  L      N+  L   +  L +   +
Sbjct: 264 SNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCII 306

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 65.4 bits (160), Expect = 2e-11
 Identities = 19/89 (21%), Positives = 33/89 (37%), Gaps = 1/89 (1%)

Query: 194 LNLPRLRVFSLRGYNIFELPKAIENLKHLRFLDLSTTKIEILRESINTLYNLHTLLLEDC 253
              P      LR   + + P     L HL+ + +    +  L +++     L TL L   
Sbjct: 78  ATQPGRVALELRSVPLPQFPDQAFRLSHLQHMTIDAAGLMELPDTMQQFAGLETLTLARN 137

Query: 254 RRLKKLCKDMGNLTKLHHLNNSNVGSLEE 282
             L+ L   + +L +L  L+      L E
Sbjct: 138 -PLRALPASIASLNRLRELSIRACPELTE 165

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 64.2 bits (157), Expect = 4e-11
 Identities = 61/337 (18%), Positives = 106/337 (31%), Gaps = 76/337 (22%)

Query: 428 SLETLFFVDICSKLQGTLPERLLLLEKLNIFRCEQLLVTLQCLPALRELEIDGCKGVVLS 487
             E L+F    + L+    + L   ++           +          +I+   G  L 
Sbjct: 13  GRENLYFQG-STALR-PYHDVLSQWQRHYNA-DRNRWHSAWRQANSNNPQIETRTGRALK 69

Query: 488 S-PTDLSSLKLVHSRDMA----------KEVFEQGLPKLERLEIQHVREQTYLWRSETRL 536
           +    L          +            + F   L  L+ + I        L      L
Sbjct: 70  ATADLLEDATQPGRVALELRSVPLPQFPDQAFR--LSHLQHMTIDA----AGL----MEL 119

Query: 537 PQDI---RSLNRLQISRCPQLISL---------LRTVKIEDCNALESLPE-------AWM 577
           P  +     L  L ++R   L +L         LR + I  C  L  LPE       +  
Sbjct: 120 PDTMQQFAGLETLTLARN-PLRALPASIASLNRLRELSIRACPELTELPEPLASTDASGE 178

Query: 578 HNSNSSLESLKIRSCNSLVSFPD-FALPSQLRTVTIKGCDALESLPEAWMQNSSTSLESL 636
           H    +L+SL++     + S P   A    L+++ I+    L +L  A   +    LE L
Sbjct: 179 HQGLVNLQSLRL-EWTGIRSLPASIANLQNLKSLKIRNS-PLSALGPAI--HHLPKLEEL 234

Query: 637 AIDSCDSLTYIARIQLPPSLKRLIIFRCDNLRFNSLRKLKISGGCPDLVSSPRFPAS--- 693
            +  C +L        PP                 L++L +   C +L++    P     
Sbjct: 235 DLRGCTALR-----NYPPIFGGRA----------PLKRLILKD-CSNLLT---LPLDIHR 275

Query: 694 ---LTELKISDMPSLERL-SSIGENLTSLKFLDLDNC 726
              L +L +    +L RL S I   L +   + +   
Sbjct: 276 LTQLEKLDLRGCVNLSRLPSLIA-QLPANCIILVPPH 311

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 60.7 bits (148), Expect = 4e-10
 Identities = 20/84 (23%), Positives = 29/84 (34%), Gaps = 2/84 (2%)

Query: 195 NLPRLRVFSLRGYNIFE-LPKAIENLKHLRFLDLS-TTKIEILRESINTLYNLHTLLLED 252
           +LP+L    LRG       P        L+ L L   + +  L   I+ L  L  L L  
Sbjct: 227 HLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRG 286

Query: 253 CRRLKKLCKDMGNLTKLHHLNNSN 276
           C  L +L   +  L     +    
Sbjct: 287 CVNLSRLPSLIAQLPANCIILVPP 310

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 60.3 bits (147), Expect = 7e-10
 Identities = 26/111 (23%), Positives = 44/111 (39%), Gaps = 14/111 (12%)

Query: 195 NLPRLRVFSLRGYNIFELPKAIENLKHLRFLDLSTTKIEILRESINTLYNLHTLLLEDCR 254
            L  L+  ++    + ELP  ++    L  L L+   +  L  SI +L  L  L +  C 
Sbjct: 102 RLSHLQHMTIDAAGLMELPDTMQQFAGLETLTLARNPLRALPASIASLNRLRELSIRACP 161

Query: 255 RLKKLCKDMG------------NLTKLHHLNNSNVGSL-EEMLMLKSLVHL 292
            L +L + +             NL  L  L  + + SL   +  L++L  L
Sbjct: 162 ELTELPEPLASTDASGEHQGLVNLQSL-RLEWTGIRSLPASIANLQNLKSL 211

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 56.1 bits (136), Expect = 2e-08
 Identities = 17/108 (15%), Positives = 36/108 (33%), Gaps = 6/108 (5%)

Query: 190 LQRLLNLPRLRVFSLRGYNIFELPKAIENLKH--LRFLDLSTTKIEILRESINTLYNLHT 247
             R  N    ++ +  G  +      +E+        L+L +  +    +    L +L  
Sbjct: 49  AWRQANSNNPQIETRTGRALKATADLLEDATQPGRVALELRSVPLPQFPDQAFRLSHLQH 108

Query: 248 LLLEDCRRLKKLCKDMGNLTKLHHLN--NSNVGSL-EEMLMLKSLVHL 292
           + ++    L +L   M     L  L    + + +L   +  L  L  L
Sbjct: 109 MTIDAA-GLMELPDTMQQFAGLETLTLARNPLRALPASIASLNRLREL 155

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 51.1 bits (123), Expect = 6e-07
 Identities = 31/184 (16%), Positives = 57/184 (30%), Gaps = 43/184 (23%)

Query: 582 SSLESLKIRSCNSLVSFPD---------------FALPSQLR-----TVTIKGCDALESL 621
           S  E+L  +   +L  + D               +    +        +  +   AL++ 
Sbjct: 12  SGRENLYFQGSTALRPYHDVLSQWQRHYNADRNRWHSAWRQANSNNPQIETRTGRALKAT 71

Query: 622 PEAWMQNSSTSLESLAIDSCDSLTYIARIQLPPSLKRLIIFRCDNLRFNSLRKLKISGGC 681
            +     +     +L + S   L      Q P    RL   +   +    L +L  +   
Sbjct: 72  ADLLEDATQPGRVALELRSV-PLP-----QFPDQAFRLSHLQHMTIDAAGLMELPDTMQQ 125

Query: 682 PDLVSSPRFPASLTELKISDMPSLERL-SSIGENLTSLKFLDLDNCPKLKYFSKQGLPKS 740
                       L  L ++    L  L +SI  +L  L+ L +  CP+L       LP+ 
Sbjct: 126 --FA-------GLETLTLARN-PLRALPASIA-SLNRLRELSIRACPELTE-----LPEP 169

Query: 741 LLRL 744
           L   
Sbjct: 170 LAST 173

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 49.2 bits (118), Expect = 3e-06
 Identities = 57/390 (14%), Positives = 114/390 (29%), Gaps = 116/390 (29%)

Query: 232 IEILRESINTLYNLHTLLLEDCRRLKKLCKDMGNLTKLHHLNNSNVGSLEEMLMLKSLVH 291
           +       +       L  +    L+     +    + ++ + +   S        +   
Sbjct: 1   MGSSHHHHHHSSGRENLYFQGSTALRPYHDVLSQWQRHYNADRNRWHSAWRQANSNNP-- 58

Query: 292 LQGTLEISRLENVKGVGDASEVQLNSKVNLKALYLQWGVRDAVEPKTETQVIDMLKPHQK 351
                               +++  +   LKA                  +++      +
Sbjct: 59  --------------------QIETRTGRALKAT---------------ADLLEDATQPGR 83

Query: 352 LELTITGYGGTKFPIWLGDSLFSKLMLLKFDNCGTCTSLP-SVGQLPFLKDPVISGMGRV 410
           + L +      +FP        S L  +  D  G    LP ++ Q   L+          
Sbjct: 84  VALELRSVPLPQFPDQAFR--LSHLQHMTIDAAGL-MELPDTMQQFAGLE---------- 130

Query: 411 KIVGSEFYGSSCS-VSFP-------SLETLFFVDICSKLQGTLPERLLLLEKLNIFRCEQ 462
                    +     + P        L  L     C +L   LPE L   +         
Sbjct: 131 -----TLTLARNPLRALPASIASLNRLRELSIRA-CPELT-ELPEPLASTD--------- 174

Query: 463 LLVTLQCLPALRELEIDGCKGVVLSSPTDLSSLKLVHSRDMAKEVFEQGLPKLERLEIQH 522
                Q L  L+ L ++      L  P  +++L+                  L+ L+I++
Sbjct: 175 ASGEHQGLVNLQSLRLEWTGIRSL--PASIANLQ-----------------NLKSLKIRN 215

Query: 523 VREQTYLWRSETRLPQDIRSLNRLQ---ISRCPQLISL---------LRTVKIEDCNALE 570
               + L    + L   I  L +L+   +  C  L +          L+ + ++DC+ L 
Sbjct: 216 ----SPL----SALGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLL 267

Query: 571 SLPEAWMHNSNSSLESLKIRSCNSLVSFPD 600
           +LP   +H   + LE L +R C +L   P 
Sbjct: 268 TLPLD-IHRL-TQLEKLDLRGCVNLSRLPS 295

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 44.2 bits (105), Expect = 1e-04
 Identities = 14/61 (22%), Positives = 21/61 (34%), Gaps = 2/61 (3%)

Query: 195 NLPRLRVFSLRGYN-IFELPKAIENLKHLRFLDLST-TKIEILRESINTLYNLHTLLLED 252
               L+   L+  + +  LP  I  L  L  LDL     +  L   I  L     +L+  
Sbjct: 251 GRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPP 310

Query: 253 C 253
            
Sbjct: 311 H 311

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 70.6 bits (173), Expect = 1e-12
 Identities = 95/595 (15%), Positives = 187/595 (31%), Gaps = 124/595 (20%)

Query: 195 NLPRLRVFSLRGYNIFELPK-AIENLKHLRFLDLSTTKI--EILRESINTLYNLHTL--- 248
            L       L    I  +   +   L+ L+ L+L +      I +E+   L NL  L   
Sbjct: 22  VLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLG 81

Query: 249 ----------LLEDCRRLKKL----------------CKDMGNLTKLHHLNNSNVGSLEE 282
                       +    L +L                 +++  LT+L  L+ + + SL  
Sbjct: 82  SSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRL-DLSKNQIRSLYL 140

Query: 283 MLMLKSLVHLQGTLEISRLENVKGVGDASEVQLNSKVNLKALYLQWGVRDAVEPKTETQV 342
                 L  L+ +++ S    +  V +     L  K  L    L      +       + 
Sbjct: 141 HPSFGKLNSLK-SIDFSSN-QIFLVCEHELEPLQGK-TLSFFSLAANSLYSRVSVDWGKC 197

Query: 343 IDMLKPHQKLELTITGYGGTKFPIWLGDSLFSKLMLLKFDNCGTCTSLPSVGQLPFLKDP 402
           ++  +    + L I         + +  + ++  +   F N  + +   S+     +   
Sbjct: 198 MNPFR---NMVLEI---------LDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGA 245

Query: 403 VISGMGRVKIVGSEFYGSSCSVSFPSLETLFFVDICSKLQGTLPERLLLLEKLNIFRCEQ 462
                       + F G + S    S+  L                   L    +F    
Sbjct: 246 GFGFHNIKDPDQNTFAGLARS----SVRHLD------------------LSHGFVFSLNS 283

Query: 463 LLVTLQCLPALRELEIDGCK-----GVVLSSPTDLSSLKLVHSR--DMAKEVFEQGLPKL 515
                + L  L+ L +   K             +L  L L ++   ++    F  GLPK+
Sbjct: 284 R--VFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNF-YGLPKV 340

Query: 516 ERLEIQHVREQTYLWRSETRLPQDIRSLNRLQISRCPQLISLLRTVKIEDCNALESLPEA 575
             +++Q       +   + +  + +  L  L +              +   + + S+P+ 
Sbjct: 341 AYIDLQKNH----IAIIQDQTFKFLEKLQTLDLRDN----------ALTTIHFIPSIPDI 386

Query: 576 WMHNSNSSLESLKIRSCNSLVSFPDFALPSQLRTVTIKGCDALESLPEAWMQNSSTSLES 635
           ++             S N LV+ P   L      + +     LE+L   +       L+ 
Sbjct: 387 FL-------------SGNKLVTLPKINL--TANLIHLSENR-LENLDILYFLLRVPHLQI 430

Query: 636 LAIDSC--DSLTYIARIQLPPSLKRLIIFRCDNLRFNSLRKLKISGGCPDLVSSPRFPAS 693
           L ++     S +        PSL++L       L  N L+    +  C D+         
Sbjct: 431 LILNQNRFSSCSGDQTPSENPSLEQL------FLGENMLQLAWETELCWDVFEGLS---H 481

Query: 694 LTELKISDMPSLERLS-SIGENLTSLKFLDLDNCPKLKYFSKQGLPKSLLRLIID 747
           L  L ++    L  L   +  +LT+L+ L L++  +L   S   LP +L  L I 
Sbjct: 482 LQVLYLNHN-YLNSLPPGVFSHLTALRGLSLNSN-RLTVLSHNDLPANLEILDIS 534

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 64.4 bits (157), Expect = 9e-11
 Identities = 91/575 (15%), Positives = 180/575 (31%), Gaps = 118/575 (20%)

Query: 193 LLNLPRLRVFSLRGYNIFEL--PKAIENLKHLRFLDLSTTKIEILRESI-NTLYNLHTLL 249
              L +L++  L           +A  NL +LR LDL ++KI  L       L++L  L 
Sbjct: 44  FPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELR 103

Query: 250 LEDCRRLKKLC------KDMGNLTKLHHLNNSNVGSLEEMLMLKSLVHLQGTLEISRLEN 303
           L  C  L          +++  LT+L  L+ + + SL        L  L+ +++ S    
Sbjct: 104 LYFCG-LSDAVLKDGYFRNLKALTRLD-LSKNQIRSLYLHPSFGKLNSLK-SIDFSSN-Q 159

Query: 304 VKGVGDASEVQLNSKVNLKALYLQWGVRDAVEPKTETQVIDMLKPHQKLELTITGYGGTK 363
           +  V +     L  K  L    L      +       + ++  +    + L I       
Sbjct: 160 IFLVCEHELEPLQGK-TLSFFSLAANSLYSRVSVDWGKCMNPFR---NMVLEI------- 208

Query: 364 FPIWLGDSLFSKLMLLKFDNCGTCTSLPSVGQLPFLKDPVISGMGRVKIVGSEFYGSSCS 423
             + +  + ++  +   F N  + +   S+     +               + F G + S
Sbjct: 209 --LDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLARS 266

Query: 424 VSFPSLETLFFVDICSKLQGTLPERLLLLEKLNIFRCEQLLVTLQCLPALRELEIDGCKG 483
               S+  L                   L    +F         + L  L+ L       
Sbjct: 267 ----SVRHLD------------------LSHGFVFSLNSR--VFETLKDLKVL------- 295

Query: 484 VVLSSPTDLSSLKLVHSRDMAKEVFEQGLPKLERLEIQHVREQTYLWRSETRLPQDIRSL 543
                  +L+  K+     +A E F  GL  L+ L + +         +   LP     +
Sbjct: 296 -------NLAYNKI---NKIADEAF-YGLDNLQVLNLSYNLLGELYSSNFYGLP----KV 340

Query: 544 NRLQISRCPQLISLLRTVKIEDCNALESLPEAWMHNSNSSLESLKIRSCNSLVSFPDFAL 603
             + + +                N +  + +         L++L +   N+L +      
Sbjct: 341 AYIDLQK----------------NHIAIIQDQTFKFL-EKLQTLDL-RDNALTTIHFI-- 380

Query: 604 PSQLRTVTIKGCDALESLPEAWMQNSSTSLESLAIDSCDSLTYIARIQLPPSLKRLIIFR 663
              +  + + G   L +LP+  +  +   L    +++ D L ++ R+   P L+ L    
Sbjct: 381 -PSIPDIFLSGNK-LVTLPKINLTANLIHLSENRLENLDILYFLLRV---PHLQIL---- 431

Query: 664 CDNLRFNSLRKLKISGGCPDLVSSPRFPASLTEL-----KISDMPSLERLSSIGENLTSL 718
              L  N            +  S       L +L      +      E    + E L+ L
Sbjct: 432 --ILNQNRFSSCSGDQTPSENPS-------LEQLFLGENMLQLAWETELCWDVFEGLSHL 482

Query: 719 KFLDLDNCPKLKYFSKQGLP--KSLLRLIIDECPL 751
           + L L++   L            +L  L ++   L
Sbjct: 483 QVLYLNHN-YLNSLPPGVFSHLTALRGLSLNSNRL 516

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 66.5 bits (162), Expect = 2e-11
 Identities = 74/293 (25%), Positives = 102/293 (34%), Gaps = 60/293 (20%)

Query: 444 TLPERLL-LLEKLNIFRCEQLLVTL-QCLPALRELEIDGCKGVVLSS-PTDLSSLKLVHS 500
           TLP+ L   +  L I      L +L    P LR LE+ G +   L+S P     L  +  
Sbjct: 54  TLPDCLPAHITTLVIPDNN--LTSLPALPPELRTLEVSGNQ---LTSLPVLPPGLLELSI 108

Query: 501 RDMAKEVFEQGLPKLERLEIQHVREQTYLWRSETRLPQDIRSLNRL-----QISRCPQLI 555
                         L +L I   +         T LP     L  L     Q++  P L 
Sbjct: 109 FSNPLTHLPALPSGLCKLWIFGNQL--------TSLPVLPPGLQELSVSDNQLASLPALP 160

Query: 556 SLLRTVKIEDCNALESLPEAWMHNSNSSLESLKIRSCNSLVSFPDFALPSQLRTVTIKGC 615
           S L  +   + N L SLP        S L+ L + S N L S P   LPS+L  +     
Sbjct: 161 SELCKLWAYN-NQLTSLPMLP-----SGLQELSV-SDNQLASLPT--LPSELYKLWAYNN 211

Query: 616 DALESLPEAWMQNSSTSLESLAIDSCDSLTYIARIQLPPSLKRLIIFRCDNLRFNSLRKL 675
             L SLP        + L+ L +     LT      LP     L          N L  L
Sbjct: 212 R-LTSLPA-----LPSGLKELIVSGN-RLT-----SLPVLPSELKELMVSG---NRLTSL 256

Query: 676 KISGGCPDLVSSPRFPASLTELKISDMPSLERL-SSIGENLTSLKFLDLDNCP 727
                       P  P+ L  L +     L RL  S+  +L+S   ++L+  P
Sbjct: 257 ------------PMLPSGLLSLSVYR-NQLTRLPESLI-HLSSETTVNLEGNP 295

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 61.4 bits (149), Expect = 6e-10
 Identities = 73/292 (25%), Positives = 98/292 (33%), Gaps = 62/292 (21%)

Query: 468 QCLP-ALRELEIDGCKGVVL--SSPTDLSSLKLVHSRDMAKEVFEQGLPKLERLEIQHVR 524
            CL      L +       L    P  +++L +    D          P+L  LE+   +
Sbjct: 36  ACLNNGNAVLNVGESGLTTLPDCLPAHITTLVI---PDNNLTSLPALPPELRTLEVSGNQ 92

Query: 525 EQTYLWRSETRLPQDIRSLNRLQIS-----RCPQLISLLRTVKIEDCNALESLPEAWMHN 579
               L    T LP     L  L I        P L S L  + I   N L SLP      
Sbjct: 93  ----L----TSLPVLPPGLLELSIFSNPLTHLPALPSGLCKLWIFG-NQLTSLPV----- 138

Query: 580 SNSSLESLKIRSCNSLVSFPDFALPSQLRTVTIKGCDALESLPEAWMQNSSTSLESLAID 639
               L+ L + S N L S P  ALPS+L  +       L SLP        + L+ L++ 
Sbjct: 139 LPPGLQELSV-SDNQLASLP--ALPSELCKLWAYNNQ-LTSLPMLP-----SGLQELSVS 189

Query: 640 SCDSLTYIARIQLPPSLKRLIIFRCDNLRFNSLRKLKISGGCPDLVSSPRFPASLTELKI 699
               L       LP     L      N R  SL               P  P+ L EL +
Sbjct: 190 DN-QLA-----SLPTLPSELYKLWAYNNRLTSL---------------PALPSGLKELIV 228

Query: 700 SDMPSLERLSSIGENLTSLKFLDLDNCPKLKYFSKQGLPKSLLRLIIDECPL 751
           S      RL+S+    + LK L +    +L       LP  LL L +    L
Sbjct: 229 SG----NRLTSLPVLPSELKELMVSGN-RLTSLPM--LPSGLLSLSVYRNQL 273

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 47.2 bits (112), Expect = 2e-05
 Identities = 21/95 (22%), Positives = 28/95 (29%), Gaps = 15/95 (15%)

Query: 195 NLPRLRVFSLRGYNIFELPKAIENLKHLRFLDLSTTKIEILRESINTLY----------- 243
             P LR   + G  +  LP     L  L       T +  L   +  L+           
Sbjct: 79  LPPELRTLEVSGNQLTSLPVLPPGLLELSIFSNPLTHLPALPSGLCKLWIFGNQLTSLPV 138

Query: 244 ---NLHTLLLEDCRRLKKLCKDMGNLTKLHHLNNS 275
               L  L + D  +L  L      L KL   NN 
Sbjct: 139 LPPGLQELSVSDN-QLASLPALPSELCKLWAYNNQ 172

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 65.8 bits (161), Expect = 2e-11
 Identities = 61/289 (21%), Positives = 105/289 (36%), Gaps = 55/289 (19%)

Query: 444 TLPERLLLLEKLNIFRCE-QLLVTLQCLPALRELEIDGCKGVVLSS-PTDLSSLKLVHSR 501
            LP+  L LE +       + L  LQ LP L  +  D      L + P    SL+ ++ R
Sbjct: 209 KLPDLPLSLESIVAGNNILEELPELQNLPFLTTIYADNNL---LKTLPDLPPSLEALNVR 265

Query: 502 DMAKEVFEQGLPKLERLEIQHVREQTYLWRSETRLPQDIRSLNRL-----QISRCPQLIS 556
           D       +    L  L++             + L +   +L  L     +I     L  
Sbjct: 266 DNYLTDLPELPQSLTFLDVSEN--------IFSGLSELPPNLYYLNASSNEIRSLCDLPP 317

Query: 557 LLRTVKIEDCNALESLPEAWMHNSNSSLESLKIRSCNSLVSFPDFALPSQLRTVTIKGCD 616
            L  + + + N L  LP          LE L   S N L   P+  LP  L+ + ++   
Sbjct: 318 SLEELNVSN-NKLIELPA-----LPPRLERLIA-SFNHLAEVPE--LPQNLKQLHVEYN- 367

Query: 617 ALESLPEAWMQNSSTSLESLAIDSCDSLTYIARIQLPPSLKRLIIFRCDNLRFNSLRKLK 676
            L   P+        S+E L ++S   L  +   +LP +LK+L      ++  N LR+  
Sbjct: 368 PLREFPD-----IPESVEDLRMNS--HLAEV--PELPQNLKQL------HVETNPLREF- 411

Query: 677 ISGGCPDLVSSPRFPASLTELKISDMPSLERLSSIGENLTSLKFLDLDN 725
                      P  P S+ +L+++    ++      E    L+    ++
Sbjct: 412 -----------PDIPESVEDLRMNSERVVDPYEFAHETTDKLEDDVFEH 449

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 58.1 bits (141), Expect = 5e-09
 Identities = 79/382 (20%), Positives = 127/382 (33%), Gaps = 87/382 (22%)

Query: 425 SFPSLETLFFVDICSKLQGTLPERLLLLEKLNIFRCEQLLVT-----------LQCLPA- 472
           +  S    +     S+ +   P       ++ + R    L             L  LP  
Sbjct: 32  NVKSKTEYYNAW--SEWERNAPPGNGEQREMAVSRLRDCLDRQAHELELNNLGLSSLPEL 89

Query: 473 ---LRELEIDGCKGVVLSS-PTDLSSLKLVHSRDMAKEVFEQGLPKLERL---------- 518
              L  L         L+  P    SLK +   +   +      P LE L          
Sbjct: 90  PPHLESLVASCNS---LTELPELPQSLKSLLVDNNNLKALSDLPPLLEYLGVSNNQLEKL 146

Query: 519 -EIQHVREQTYLWRSE---TRLPQDIRSLNRLQISRC-----PQLISLLRTVKIE-DCNA 568
            E+Q+      +        +LP    SL  +          P+L +L     I  D N+
Sbjct: 147 PELQNSSFLKIIDVDNNSLKKLPDLPPSLEFIAAGNNQLEELPELQNLPFLTAIYADNNS 206

Query: 569 LESLPEAWMHNSNSSLESLKIRSCNSLVSFPDFALPSQLRTVTIKGCDALESLPEAWMQN 628
           L+ LP+        SLES+   + N L   P+      L T+       L++LP+     
Sbjct: 207 LKKLPD-----LPLSLESIVAGN-NILEELPELQNLPFLTTIYADNNL-LKTLPD----- 254

Query: 629 SSTSLESLAIDSCDSLTYIARIQLPPSLKRLIIFRCDNLRFN-------SLRKLKISGGC 681
              SLE+L +     LT      LP   + L         F+       +L  L  S   
Sbjct: 255 LPPSLEALNVRDN-YLT-----DLPELPQSLTFLDVSENIFSGLSELPPNLYYLNASSN- 307

Query: 682 PDLVSSPRFPASLTELKISD---------MPSLE-------RLSSIGENLTSLKFLDLDN 725
            ++ S    P SL EL +S+          P LE        L+ + E   +LK L ++ 
Sbjct: 308 -EIRSLCDLPPSLEELNVSNNKLIELPALPPRLERLIASFNHLAEVPELPQNLKQLHVEY 366

Query: 726 CPKLKYFSKQGLPKSLLRLIID 747
              L+ F    +P+S+  L ++
Sbjct: 367 N-PLREFPD--IPESVEDLRMN 385

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 54.6 bits (132), Expect = 7e-08
 Identities = 71/339 (20%), Positives = 121/339 (35%), Gaps = 76/339 (22%)

Query: 425 SFPSLETLFFVDICSKLQGTLPERLLLLEKLNIFRCE-QLLVTLQCLPALRELEIDGCKG 483
              SL++L   +   K    L +   LLE L +   + + L  LQ    L+ +++D    
Sbjct: 109 LPQSLKSLLVDNNNLK---ALSDLPPLLEYLGVSNNQLEKLPELQNSSFLKIIDVDNNS- 164

Query: 484 VVLSS-PTDLSSLKLVHSRDMAKEVFEQ--GLPKLERLEIQHVREQTYLWRSETRLPQDI 540
             L   P    SL+ + + +   E   +   LP L  +   +      L     +LP   
Sbjct: 165 --LKKLPDLPPSLEFIAAGNNQLEELPELQNLPFLTAIYADN----NSL----KKLPDLP 214

Query: 541 RSLNRL-----QISRCPQLISL--LRTVKIEDCNALESLPEAWMHNSNSSLESLKIRSCN 593
            SL  +      +   P+L +L  L T+   D N L++LP+        SLE+L +   N
Sbjct: 215 LSLESIVAGNNILEELPELQNLPFLTTIYA-DNNLLKTLPD-----LPPSLEALNV-RDN 267

Query: 594 SLVSFPDF------------------ALPSQLRTVTIKGCDALESLPEAWMQNSSTSLES 635
            L   P+                    LP  L  +     + + SL +        SLE 
Sbjct: 268 YLTDLPELPQSLTFLDVSENIFSGLSELPPNLYYLNASSNE-IRSLCDLP-----PSLEE 321

Query: 636 LAIDSCDSLTYIARIQLPPSLKRLIIFRCDNLRFNS-------LRKLKISGGCPDLVSSP 688
           L + +   L      +LP    RL                   L++L +      L   P
Sbjct: 322 LNVSNN-KLI-----ELPALPPRLERLIASFNHLAEVPELPQNLKQLHVEYNP--LREFP 373

Query: 689 RFPASLTELKISDMPSLERLSSIGENLTSLKFLDLDNCP 727
             P S+ +L+++       L+ + E   +LK L ++  P
Sbjct: 374 DIPESVEDLRMNS-----HLAEVPELPQNLKQLHVETNP 407

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 48.1 bits (115), Expect = 7e-06
 Identities = 21/100 (21%), Positives = 42/100 (42%), Gaps = 6/100 (6%)

Query: 193 LLNLPRLRVFSLRGYNIFELPKAIENLKHLRFLDLSTTKIEILRESINTLYNLHTLLLED 252
           L N   L++  +   ++ +LP    +L+    +     ++E L E +  L  L  +  ++
Sbjct: 149 LQNSSFLKIIDVDNNSLKKLPDLPPSLEF---IAAGNNQLEELPE-LQNLPFLTAIYADN 204

Query: 253 CRRLKKLCKDMGNLTKLHHLNNSNVGSLEEMLMLKSLVHL 292
              LKKL     +L  +    N+ +  L E+  L  L  +
Sbjct: 205 N-SLKKLPDLPLSLESI-VAGNNILEELPELQNLPFLTTI 242

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 47.3 bits (113), Expect = 1e-05
 Identities = 50/225 (22%), Positives = 72/225 (32%), Gaps = 53/225 (23%)

Query: 532 SETRLPQDIRSLNRLQ-----ISRCPQLISLLRTVKIEDCNALESLPEAWMHNSNSSLES 586
           S T L + +R  + L                             + P    +     +  
Sbjct: 9   SNTFLQEPLRHSSNLTEMPVEAENVKSKTEYY----NAWSEWERNAPPG--NGEQREMAV 62

Query: 587 LKIRSCNSLVSFPDFALPSQLRTVTIKGCDALESLPEAWMQNSSTSLESLAIDSCDSLTY 646
            ++R C          L  Q   + +     L SLPE         LESL   SC+SLT 
Sbjct: 63  SRLRDC----------LDRQAHELELNNLG-LSSLPE-----LPPHLESLVA-SCNSLT- 104

Query: 647 IARIQLPPSLKRLIIFRCDNLRFNSLRKLKISGGCPDLVSSPRFPASLTELKISDMPSLE 706
               +LP   + L     DN    +L                  P  L  L +S+   LE
Sbjct: 105 ----ELPELPQSLKSLLVDNNNLKAL---------------SDLPPLLEYLGVSNN-QLE 144

Query: 707 RLSSIGENLTSLKFLDLDNCPKLKYFSKQGLPKSLLRLIIDECPL 751
           +L  +  N + LK +D+DN   LK      LP SL  +      L
Sbjct: 145 KLPELQ-NSSFLKIIDVDNN-SLKKLPD--LPPSLEFIAAGNNQL 185

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 45.8 bits (109), Expect = 4e-05
 Identities = 21/114 (18%), Positives = 40/114 (35%), Gaps = 18/114 (15%)

Query: 195 NLPRLRVFSLRGYNIFELPKAIENLKHLRFLDLSTTKIEILRESINTLY----------- 243
             P L        ++ ELP+  ++LK L   + +   +  L   +  L            
Sbjct: 89  LPPHLESLVASCNSLTELPELPQSLKSLLVDNNNLKALSDLPPLLEYLGVSNNQLEKLPE 148

Query: 244 -----NLHTLLLEDCRRLKKLCKDMGNLTKLHHLNNSNVGSLEEMLMLKSLVHL 292
                 L  + +++   LKKL     +L  +    N+ +  L E+  L  L  +
Sbjct: 149 LQNSSFLKIIDVDNN-SLKKLPDLPPSLEFI-AAGNNQLEELPELQNLPFLTAI 200

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 63.6 bits (155), Expect = 1e-10
 Identities = 89/545 (16%), Positives = 175/545 (32%), Gaps = 74/545 (13%)

Query: 196 LPRLRVFSLRGYNIFELPK-AIENLKHLRFLDLSTTKIEIL-RESINTLYNLHTLLLEDC 253
              ++   L    I  +    +    +L+ L L +++I  +  ++  +L +L  L L D 
Sbjct: 25  TAAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDN 84

Query: 254 RRLKKL----CKDMGNLTKLHHLNNSNVGSLEEMLMLKSLVHLQGTLEISRLENVKGVGD 309
             L  L       + +L  L +L  +   +L    +  +L +LQ TL I  +E    +  
Sbjct: 85  -HLSSLSSSWFGPLSSLKYL-NLMGNPYQTLGVTSLFPNLTNLQ-TLRIGNVETFSEIRR 141

Query: 310 ASEVQLNSKVNLKALYLQWGVRDAVEPKTETQVIDMLKPHQKLELTITGYGGTKFPIWLG 369
                L    +L  L ++       + ++       LK  + +         + F + + 
Sbjct: 142 IDFAGLT---SLNELEIKALSLRNYQSQS-------LKSIRDIHHLTLHLSESAFLLEIF 191

Query: 370 DSLFSKLMLLK-FDNCGTCTSLPSVGQLPFLKDPVISGMGRVKIVGSEFYG-SSCSVSFP 427
             + S +  L+  D          +                  +    F           
Sbjct: 192 ADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYIL 251

Query: 428 SLETLFFVDICSKLQGTLPERLLLLEKLNIFRCEQLLVTLQCLPALRELEIDGCKGVVLS 487
            L  + F D    L G         + ++     + + T++ L  + +  +      V S
Sbjct: 252 ELSEVEFDDC--TLNGLGDFNPSESDVVSELGKVETV-TIRRL-HIPQFYLFYDLSTVYS 307

Query: 488 SPTDLSSLKLVHSR--DMAKEVFEQGLPKLERLEIQHVREQTYLWRSETRLPQDIRSLNR 545
               +  + + +S+   +      Q L  LE L++         +   +       SL  
Sbjct: 308 LLEKVKRITVENSKVFLVPCSFS-QHLKSLEFLDLSENL-MVEEYLKNSACKGAWPSLQT 365

Query: 546 LQISRCPQLISLLRTVKIEDCNALESLPEAWMHNSN-SSLESLKIRSCNSLVSFPD-FAL 603
           L +S+                N L S+ +         +L SL I S N+    PD    
Sbjct: 366 LVLSQ----------------NHLRSMQKTGEILLTLKNLTSLDI-SRNTFHPMPDSCQW 408

Query: 604 PSQLRTVTIKGCDALESLPEAWMQNSSTSLESLAIDSCDSLTYIARIQLPPSLKRLIIFR 663
           P ++R + +     +  +     Q     LE L + +  +L   +     P L+ L    
Sbjct: 409 PEKMRFLNLSSTG-IRVVKTCIPQT----LEVLDVSNN-NLDSFSLF--LPRLQEL---- 456

Query: 664 CDNLRFNSLRKLKISGGCPDLVSSPRFPASLTELKISDMPSLERLS-SIGENLTSLKFLD 722
              +  N L+ L                  L  +KIS    L+ +   I + LTSL+ + 
Sbjct: 457 --YISRNKLKTL----------PDASLFPVLLVMKISRN-QLKSVPDGIFDRLTSLQKIW 503

Query: 723 LDNCP 727
           L   P
Sbjct: 504 LHTNP 508

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 55.5 bits (134), Expect = 4e-08
 Identities = 94/566 (16%), Positives = 182/566 (32%), Gaps = 98/566 (17%)

Query: 194 LNLPRLRVFSLRGYNIFELPKAIENLKHLRFLDLSTTKI-EILRESINTLYNLHTLLLED 252
           L+     V   R  +   +P  +     ++ LDLS  KI  I    +    NL  L+L+ 
Sbjct: 2   LSCDASGVCDGRSRSFTSIPSGL--TAAMKSLDLSFNKITYIGHGDLRACANLQVLILKS 59

Query: 253 CRRLKKL----CKDMGNLTKLHHLNNSNVGSLEEMLMLKSLVHLQGTLEIS--RLENVKG 306
            R +  +       +G+L  L  L+++++ SL        L  L+  L +     + +  
Sbjct: 60  SR-INTIEGDAFYSLGSLEHLD-LSDNHLSSLSSSW-FGPLSSLK-YLNLMGNPYQTLGV 115

Query: 307 VGDASEVQLNSKVNLKALYLQWGVRDAVEPKTETQVIDMLKPHQKLELTITGYGGTKFPI 366
                     +  NL+ L +      +   + +   +  L      EL I       +  
Sbjct: 116 TSL-----FPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLN-----ELEIKALSLRNYQS 165

Query: 367 WLGDSLFSKLMLLKFDNCGTCTSLPSVGQLPFLKDPVISGMGRVKIVGSEFYGSSCSVSF 426
               S+   +  L               +  FL +     +  V+ +          +  
Sbjct: 166 QSLKSI-RDIHHLTLHLS----------ESAFLLEIFADILSSVRYL---------ELRD 205

Query: 427 PSLETLFFVDICSKLQGTLPERLLLLEKLNIFR--CEQLLVTLQCLPALRELEIDGCKGV 484
            +L    F       + + P + L      +      +LL  L+ +  L E+E D     
Sbjct: 206 TNLARFQF-SPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFD----- 259

Query: 485 VLSSPTDLSSLKLVHSRDMAKEVFEQGLPKLERLEIQHVR-EQTYLWRSETRLPQDIRSL 543
                 D +   L        +V    L K+E + I+ +   Q YL+   + +   +  +
Sbjct: 260 ------DCTLNGLGDFNPSESDVV-SELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKV 312

Query: 544 NRLQISRCPQLISLLRTVKIEDCNALESLPEAWMHNSNSSLESLKIRSCNSLVSFPDFAL 603
            R+ +      + L+     +   +LE L       S + +    +++            
Sbjct: 313 KRITVENSK--VFLVPCSFSQHLKSLEFL-----DLSENLMVEEYLKNSAC------KGA 359

Query: 604 PSQLRTVTIKGCDALESLPEAWMQNSS-TSLESLAIDSCDSLTYI-ARIQLPPSLKRLII 661
              L+T+ +     L S+ +      +  +L SL I    +   +    Q P  ++ L  
Sbjct: 360 WPSLQTLVLSQNH-LRSMQKTGEILLTLKNLTSLDISRN-TFHPMPDSCQWPEKMRFL-- 415

Query: 662 FRCDNLRFNSLRKLKISGGCPDLVSSPRFPASLTELKISDMPSLERLSSIGENLTSLKFL 721
               NL    +R +               P +L  L +S+      L S    L  L+ L
Sbjct: 416 ----NLSSTGIRVV-----------KTCIPQTLEVLDVSNN----NLDSFSLFLPRLQEL 456

Query: 722 DLDNCPKLKYFSKQGLPKSLLRLIID 747
            +    KLK      L   LL + I 
Sbjct: 457 YISRN-KLKTLPDASLFPVLLVMKIS 481

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 49.0 bits (117), Expect = 4e-06
 Identities = 20/100 (20%), Positives = 45/100 (45%), Gaps = 4/100 (4%)

Query: 193 LLNLPRLRVFSLRGYNIFELPKAIENLKHLRFLDLSTTKIEILRESINTLYNLHTLLLED 252
           LL L  L    +       +P + +  + +RFL+LS+T I +++  I     L  L + +
Sbjct: 383 LLTLKNLTSLDISRNTFHPMPDSCQWPEKMRFLNLSSTGIRVVKTCI--PQTLEVLDVSN 440

Query: 253 CRRLKKLCKDMGNLTKLHHLNNSNVGSLEEMLMLKSLVHL 292
              L      +  L +L +++ + + +L +  +   L+ +
Sbjct: 441 N-NLDSFSLFLPRLQEL-YISRNKLKTLPDASLFPVLLVM 478

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 47.8 bits (114), Expect = 1e-05
 Identities = 74/475 (15%), Positives = 146/475 (30%), Gaps = 114/475 (24%)

Query: 193 LLNLPRLRVFSLRGYNIFELPK-AIENLKHLRFLDLSTTKIE-ILRESINTLYNLHTLLL 250
              L  L    ++  ++      ++++++ +  L L  ++   +L    + L ++  L L
Sbjct: 144 FAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESAFLLEIFADILSSVRYLEL 203

Query: 251 EDCR--RLKKLCKDMGNLTKLHHLNNSNVGSLEEMLMLKSLVHLQGTLEIS-------RL 301
            D    R +     +  ++            L +    + L  L+  LE+S        L
Sbjct: 204 RDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDCTL 263

Query: 302 ENVKGVGDASEVQLNSKVNLKALYLQWGVRDAVEPKTETQVIDMLKPHQKLELTITGYGG 361
             +     +    ++    ++ + ++                          L I  +  
Sbjct: 264 NGLGDFNPSESDVVSELGKVETVTIR-------------------------RLHIPQFYL 298

Query: 362 TKFPIWLGDSLFSKLMLLKFDN-------CGTCTSLPSVGQLPFLKDPVISGMGRVKIVG 414
                 +   L  K+  +  +N       C     L S   L FL       +    +V 
Sbjct: 299 FYDLSTVYSLL-EKVKRITVENSKVFLVPCSFSQHLKS---LEFLD------LSENLMVE 348

Query: 415 SEFYGSSCSVSFPSLETLFFVDICSKLQGTLPERLLLLEKLNIFRCEQLLVTLQCLPALR 474
                S+C  ++PSL+TL                   L + ++   ++    L  L  L 
Sbjct: 349 EYLKNSACKGAWPSLQTLV------------------LSQNHLRSMQKTGEILLTLKNLT 390

Query: 475 ELEIDGCK----GVVLSSPTDLSSLKLVHSRDMAKEVFEQGLPKLERLEIQHVREQTYLW 530
            L+I              P  +  L L  +    + V       LE L++ +        
Sbjct: 391 SLDISRNTFHPMPDSCQWPEKMRFLNLSSTGI--RVVKTCIPQTLEVLDVSNNN------ 442

Query: 531 RSETRLPQDIRSLNRLQISRCPQLISLLRTVKIEDCNALESLPEAWMHNSNSSLESLKIR 590
                    +  L  L ISR                N L++LP+A +      L  +KI 
Sbjct: 443 --LDSFSLFLPRLQELYISR----------------NKLKTLPDASLFP---VLLVMKIS 481

Query: 591 SCNSLVSFPD--FALPSQLRTVTIKG------CDALESLPEAWMQNSSTSLESLA 637
             N L S PD  F   + L+ + +        C  ++ L   W+  +S   +  A
Sbjct: 482 R-NQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRIDYLSR-WLNKNSQKEQGSA 534

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 59.3 bits (144), Expect = 3e-09
 Identities = 101/588 (17%), Positives = 194/588 (32%), Gaps = 139/588 (23%)

Query: 193 LLNLPRLRVFSLRGYNIFELPK-AIENLKHLRFLDLSTTKIEIL-RESINTLYNLHTLLL 250
             + P L+V  L    I  +   A ++L HL  L L+   I+ L   + + L +L  L+ 
Sbjct: 48  FFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVA 107

Query: 251 EDCRRLKKLCKDM-GNLTKLHHLN--NSNVGSLEEMLMLKSLVHLQGTLEIS--RLENVK 305
            +   L  L     G+L  L  LN  ++ + S +      +L +L+  L++S  +++++ 
Sbjct: 108 VETN-LASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLE-HLDLSSNKIQSIY 165

Query: 306 GVGDASEVQLNSKVNLKALYLQWGVRDAVEP----KTETQVIDMLKPHQKLELTITGYGG 361
                  V     +   +L L     + ++P    +     + +      L +  T   G
Sbjct: 166 C--TDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQG 223

Query: 362 TKFPIWLGDSLFSKLMLLKFDNCGTCTSLPSVGQLPFLKDPVISGMGRVKIVGSEFYGSS 421
                 L      +L+L +F N G          L  L +  I      ++   ++Y   
Sbjct: 224 ------LAGLEVHRLVLGEFRNEGNLEKFDK-SALEGLCNLTIEEF---RLAYLDYYLDD 273

Query: 422 CSVSFPSLETLFFVDICSKLQGTLPE--RLLLLEKLNIFRCEQLLVTLQCLPALRELEID 479
               F  L  +    + S     + +       + L +  C+        L +L+ L   
Sbjct: 274 IIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQFPTLKLKSLKRL--- 330

Query: 480 GCKGVVLSSPTDLSSLKLVHSRDMAKEVFEQGLPKLERLEIQHVREQTYLWRSETRLPQD 539
                        +S K  ++        E  LP LE L++                   
Sbjct: 331 -----------TFTSNKGGNAFS------EVDLPSLEFLDLSR----------------- 356

Query: 540 IRSLNRLQ-ISRCPQLISLLRTVKIEDC--NALESLPEAWMHNSNSSLESLKIRSCNSLV 596
               N L     C Q      ++K  D   N + ++   ++      LE L  +  ++L 
Sbjct: 357 ----NGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFL--GLEQLEHLDFQH-SNLK 409

Query: 597 SFPDFALPSQLRTVTIKGCDALESLPEAWMQNSSTSLESLAIDSCDSLTYIARIQLPPSL 656
              +F++   LR +              ++  S T          + L+         SL
Sbjct: 410 QMSEFSVFLSLRNLI-------------YLDISHTHTRVAFNGIFNGLS---------SL 447

Query: 657 KRLIIFRCDNLRFNSLRKLKISGGCPDLVSSPRFPASLTELKISD-------------MP 703
           + L       +  NS ++  +     +L +       LT L +S              + 
Sbjct: 448 EVL------KMAGNSFQENFLPDIFTELRN-------LTFLDLSQCQLEQLSPTAFNSLS 494

Query: 704 SLERLS-----------SIGENLTSLKFLDLDN------CPKLKYFSK 734
           SL+ L+            I + LTSL+ + L        CP++ Y S+
Sbjct: 495 SLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRIDYLSR 542

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 52.0 bits (125), Expect = 5e-07
 Identities = 92/486 (18%), Positives = 158/486 (32%), Gaps = 83/486 (17%)

Query: 195 NLPRLRVFSLRGYNI--FELPKAIENLKHLRFLDLSTTKI-EILRESINTLYNLHTLLLE 251
           +L  L+  ++    I  F+LP+   NL +L  LDLS+ KI  I    +  L+ +  L L 
Sbjct: 122 HLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLS 181

Query: 252 ---DCRRLKKLCKDMGNLTKLHHLNNSNVGSLEEML--MLKSLVHLQ-GTLEISRLENVK 305
                  +  +        +LH L   N      ++   ++ L  L+   L +    N  
Sbjct: 182 LDLSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEG 241

Query: 306 GVGDASEVQLNSKVNLKALYLQWGVRDAVEPKTETQVIDMLKPHQKLE-LTITGYGGTKF 364
            +    +  L    NL         R A        +ID+      +   ++      + 
Sbjct: 242 NLEKFDKSALEGLCNLTIEEF----RLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERV 297

Query: 365 PIWLGDSLFSKLMLLKFDNCGTCTSLPSVGQLPFLKDPVISGMGRVKIVGSEFYGSSCSV 424
             +  +  +  L L+               Q P LK   +    R+    ++   +   V
Sbjct: 298 KDFSYNFGWQHLELVNCKFG----------QFPTLKLKSLK---RLTFTSNKGGNAFSEV 344

Query: 425 SFPSLETL-------FFVDICSKLQGTLPERLLLLEKLNIFRCE--QLLVTLQCLPALRE 475
             PSLE L        F   CS+           L+ L++       +      L  L  
Sbjct: 345 DLPSLEFLDLSRNGLSFKGCCSQSDFGTTS----LKYLDLSFNGVITMSSNFLGLEQLEH 400

Query: 476 LEIDGCK------GVVLSSPTDLSSLKLVHSR--DMAKEVFEQGLPKLERLEIQHVREQT 527
           L+             V  S  +L  L + H+        +F  GL  LE L++       
Sbjct: 401 LDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIF-NGLSSLEVLKMAG----- 454

Query: 528 YLWRSETRLPQDIRSLNRLQISRCPQLISLLRTVKIED--CNALESLPEAWMHNSNSSLE 585
                           N  Q +  P + + LR +   D     LE L     ++  SSL+
Sbjct: 455 ----------------NSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSL-SSLQ 497

Query: 586 SLKIRSCNSLVSFPDFALP--SQLRTVTIKG------CDALESLPEAWMQNSSTSLESLA 637
            L + S N L S PD      + L+ + +        C  ++ L   W+  +S   +  A
Sbjct: 498 VLNMAS-NQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRIDYLSR-WLNKNSQKEQGSA 555

Query: 638 IDSCDS 643
             S   
Sbjct: 556 KCSGSG 561

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 59.1 bits (143), Expect = 4e-09
 Identities = 79/606 (13%), Positives = 175/606 (28%), Gaps = 104/606 (17%)

Query: 193 LLNLPRLRVFSLRGYNI-FELPKAIENLKHLRFLDLSTTKIEILRESINTLYNLHTLLLE 251
           L N  R+   SL G+     +P AI  L  L+ L   T    +             +  E
Sbjct: 319 LDNNGRVTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEE 378

Query: 252 DCRRLKKLCKDM--GNLTKLHHLNNSNVGSLE--EMLMLKSLVHLQ-GTLEISRLENVKG 306
              R++   K M      +L+  +          EM  +K    +     +I  L N   
Sbjct: 379 RKHRIRMHYKKMFLDYDQRLNLSDLLQDAINRNPEMKPIKKDSRISLKDTQIGNLTNRIT 438

Query: 307 VGDASEVQLNSKVNLKALYLQWGVRDAVEPKTETQVIDMLKPHQKLELTITGYGGTKFPI 366
               +  +L     L+ +Y         +              ++ E     +       
Sbjct: 439 FISKAIQRL---TKLQIIYFANS-PFTYDNIAVDWEDANSDYAKQYENEELSWSN----- 489

Query: 367 WLGDSLFSKLMLLKFDNCGTCTSLP-SVGQLPFLKDPVISG---MGRVKIVGSEFYGSSC 422
                    L  ++  NC   T LP  +  LP L+   I+    +   ++       +  
Sbjct: 490 ------LKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADD 543

Query: 423 SVSFPSLETLFFVDICSKLQGTLPERLLL-----LEKLNIFRCEQL--LVTLQCLPALRE 475
             + P ++  +     + L+   P    L     L  L+     ++  L        L +
Sbjct: 544 EDTGPKIQIFYMGY--NNLEE-FPASASLQKMVKLGLLDCVHN-KVRHLEAFGTNVKLTD 599

Query: 476 LEIDGCK-----GVVLSSPTDLSSLKLVHSR--DMAKEVFEQGLPKLERLEIQHVREQTY 528
           L++D  +         +    +  L   H++   +      + +  +  ++  + +    
Sbjct: 600 LKLDYNQIEEIPEDFCAFTDQVEGLGFSHNKLKYIPNIFNAKSVYVMGSVDFSYNKI--- 656

Query: 529 LWRSETRLPQDIRSLNRLQISRCPQLISLLRTVKIEDCNALESLPEAWMHNSNSSLESLK 588
                    ++I     +   +     ++         N ++  P        S + ++ 
Sbjct: 657 -----GSEGRNI--SCSMDDYKGINASTVTL-----SYNEIQKFPTELFATG-SPISTII 703

Query: 589 IRSCNSLVSFPDFALPSQLRTVTIKGCDALESL----------PEAWMQNSSTSLESLAI 638
           + S N + S P+ +L  + +    K    L ++           + +   +   L ++ +
Sbjct: 704 L-SNNLMTSIPENSL--KPKDGNYKNTYLLTTIDLRFNKLTSLSDDFRATTLPYLSNMDV 760

Query: 639 DSCDSLTYIARIQLPPSLKRLIIFRCDNLRFNSLRKLKISGGCPDLVSSPRFPASLTELK 698
                 +       P             L+   +R  + + G   L   P          
Sbjct: 761 SYN-CFSSF-----PTQ-----PLNSSQLKAFGIRHQRDAEGNRILRQWPTG-------- 801

Query: 699 ISDMPSLE-------RLSSI-GENLTSLKFLDLDNCPKLKYFSKQGLPKSL----LRLII 746
           I+  PSL         +  +  +    L  LD+ + P         +   +      L+ 
Sbjct: 802 ITTCPSLIQLQIGSNDIRKVDEKLTPQLYILDIADNP-NISIDVTSVCPYIEAGMYVLLY 860

Query: 747 DECPLI 752
           D+   I
Sbjct: 861 DKTQDI 866

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 51.8 bits (124), Expect = 7e-07
 Identities = 16/105 (15%), Positives = 36/105 (34%), Gaps = 9/105 (8%)

Query: 192 RLLNLPRLRVFSLRGYNIFELPKAIENLKHLRFLDLSTTKIEILRESINTLYNLHTLLLE 251
             ++L   +        I  + KAI+ L  L+ +  + +       ++    +      +
Sbjct: 421 SRISLKDTQ-IGNLTNRITFISKAIQRLTKLQIIYFANSPFTYDNIAV----DWEDANSD 475

Query: 252 DCRRLKKLCKDMGNLTKLHHL---NNSNVGSL-EEMLMLKSLVHL 292
             ++ +       NL  L  +   N  N+  L + +  L  L  L
Sbjct: 476 YAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSL 520

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 51.4 bits (123), Expect = 1e-06
 Identities = 61/494 (12%), Positives = 136/494 (27%), Gaps = 111/494 (22%)

Query: 238 SINTLYNLHTLLLEDCRRLKKLCKDMGNLTKLHHLN-NSNVGSLEEMLMLKSLVHLQGTL 296
            ++    +  L L       ++   +G LT+L  L+  ++               L G  
Sbjct: 318 DLDNNGRVTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTH--------SETVSGRLFGDE 369

Query: 297 EISRLENVKGVGDASEVQLNSKVNLKALYLQWGVRDAVEPKTETQVIDMLKPHQKLELTI 356
           E++                  K  ++  Y +               +D  +     +L  
Sbjct: 370 ELTPDM-----------SEERKHRIRMHYKK-------------MFLDYDQRLNLSDLLQ 405

Query: 357 TGYGGTKFPIWLGDSLFSKLMLLKFDNCGTC-TSLP-SVGQLPFLKDPVISGMGRVKIVG 414
                      +       L   +  N     T +  ++ +L  L+              
Sbjct: 406 DAINRNPEMKPIKKDSRISLKDTQIGNLTNRITFISKAIQRLTKLQ-------------- 451

Query: 415 SEFYGSSCSVSFPSLETLFFVDICSKLQGTLPERLLLLEKLNIFRCEQLLVTLQCLPALR 474
              Y ++   ++ ++                             + E   ++   L  L 
Sbjct: 452 -IIYFANSPFTYDNIAVD----------------WEDANSDYAKQYENEELSWSNLKDLT 494

Query: 475 ELEIDGCKGVVLSSPTDLSSLKLVHSRDMAKEVFEQGLPKLERLEIQH--VREQTYLWRS 532
           ++E+  C                 +   +   ++   LP+L+ L I          L   
Sbjct: 495 DVELYNCP----------------NMTQLPDFLY--DLPELQSLNIACNRGISAAQLKAD 536

Query: 533 ETRLPQDIRSLNRLQISRCPQLISLLRTVKIEDCNALESLPEAWMHNSNSSLESLKIRSC 592
            TRL  D  +  ++QI        +         N LE  P +        L  L     
Sbjct: 537 WTRLADDEDTGPKIQI------FYM-------GYNNLEEFPASASLQKMVKLGLLDC-VH 582

Query: 593 NSLVSFPDFALPSQLRTVTIKGCDALESLPEAWMQNSSTSLESLAIDSCDSLTYIARIQL 652
           N +     F    +L  + +     +E +PE +   +   +E L       L YI  I  
Sbjct: 583 NKVRHLEAFGTNVKLTDLKLDYN-QIEEIPEDFCAFTD-QVEGLGFSHN-KLKYIPNIFN 639

Query: 653 PPSLKRLIIFRCDNLRFNSLRKLKISGGCPDLVSSPRFPASLTELKISDMPSLERL-SSI 711
             S+  +      +  +N +     +  C           + + + +S    +++  + +
Sbjct: 640 AKSVYVMGSV---DFSYNKIGSEGRNISCS---MDDYKGINASTVTLSYN-EIQKFPTEL 692

Query: 712 GENLTSLKFLDLDN 725
               + +  + L N
Sbjct: 693 FATGSPISTIILSN 706

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 42.6 bits (100), Expect = 5e-04
 Identities = 19/122 (15%), Positives = 41/122 (33%), Gaps = 14/122 (11%)

Query: 195 NLPRLRVFSLRGYNIFELPKAIENLKHLRFLDLSTTKI-------EILRESINTLYNLHT 247
            LP L    +        P    N   L+   +   +              I T  +L  
Sbjct: 751 TLPYLSNMDVSYNCFSSFPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQ 810

Query: 248 LLLEDCRRLKKLCKDMGNLTKLHHLN---NSNVGSLEEMLMLKSLVHLQGTLEISRLENV 304
           L +     ++K+  D     +L+ L+   N N+ S++   +   +      L   + +++
Sbjct: 811 LQIGSN-DIRKV--DEKLTPQLYILDIADNPNI-SIDVTSVCPYIEAGMYVLLYDKTQDI 866

Query: 305 KG 306
           +G
Sbjct: 867 RG 868

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 58.5 bits (142), Expect = 5e-09
 Identities = 93/570 (16%), Positives = 174/570 (30%), Gaps = 100/570 (17%)

Query: 193 LLNLPRLRVFSLRGYNIFEL-PKAIENLKHLRFLDLSTTKI-EILRESINTLYNLHTLLL 250
             N   L+   L    I  +  KA   L HL  L L+   I      S + L +L  L+ 
Sbjct: 52  FSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVA 111

Query: 251 EDCRRLKKLCKDM-GNLTKLHHLNNSN--VGSLEEMLMLKSLVHLQGTLEIS--RLENVK 305
            + + L  L     G L  L  LN ++  + S +      +L +L   +++S   ++ + 
Sbjct: 112 VETK-LASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLV-HVDLSYNYIQTIT 169

Query: 306 GVGDASEVQLNSKVNLKALYLQWGVRDAVEPKTETQVIDMLKPHQKLELTITGYGGTKFP 365
              +  +    +     +L +     D ++ +         +  +  ELT+ G   +   
Sbjct: 170 V--NDLQFLRENPQVNLSLDMSLNPIDFIQDQA-------FQGIKLHELTLRGNFNSSNI 220

Query: 366 IWLGDSLFSKLMLLKFDNCGTCTSLPSVGQLPFLKDPVISGMGRVKIVGSEFYGSSCSVS 425
           +       + L + +               L   +  ++ G+  V I   EF  +  +  
Sbjct: 221 MKTCLQNLAGLHVHRLIL----GEFKDERNLEIFEPSIMEGLCDVTI--DEFRLTYTNDF 274

Query: 426 FPSLETLFFVDICSKLQ---------GTLPE--RLLLLEKLNIFRCEQLLVTLQCLPALR 474
              +         + +            L +  +    + L+I RC+        LP L+
Sbjct: 275 SDDIVKFHC---LANVSAMSLAGVSIKYLEDVPKHFKWQSLSIIRCQLKQFPTLDLPFLK 331

Query: 475 ELEIDGCKGVVLSSPTDLSSLKLVHSRDMAKEVFEQGLPKLERLEIQHVREQTYLWRSET 534
            L +   KG +      L SL  +                L R  +      +Y      
Sbjct: 332 SLTLTMNKGSISFKKVALPSLSYLD---------------LSRNALSFSGCCSYSDLGTN 376

Query: 535 RLPQDIRSLNRLQISRCPQLISLLRTVKIEDC--NALESLPEAWMHNSNSSLESLKIRSC 592
            L + +  L+             L  ++  D   + L+ + E     S   L  L I S 
Sbjct: 377 SL-RHL-DLSFNGAIIMSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDI-SY 433

Query: 593 NSLVSFPDFALP--SQLRTVTIKGCDALESLPEAWMQNSSTSLESLAIDSCDSLTYIAR- 649
            +     D      + L T+ + G    ++       N +T+L  L +  C  L  I+  
Sbjct: 434 TNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFAN-TTNLTFLDLSKC-QLEQISWG 491

Query: 650 -IQLPPSLKRLIIFRCDNLRFNSLRKLKISGGCPDLVSSPRFPASLTELKISDMPSLERL 708
                  L+ L      N+  N+L                     L     + + SL  L
Sbjct: 492 VFDTLHRLQLL------NMSHNNLL-------------------FLDSSHYNQLYSLSTL 526

Query: 709 S-----------SIGENLTSLKFLDLDNCP 727
                        +     SL F +L N  
Sbjct: 527 DCSFNRIETSKGILQHFPKSLAFFNLTNNS 556

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 53.1 bits (128), Expect = 2e-07
 Identities = 85/552 (15%), Positives = 173/552 (31%), Gaps = 95/552 (17%)

Query: 195 NLPR-LRVFSLRGYNIFELPK-AIENLKHLRFLDLSTTKIE-ILRESINTLYNLHTLLLE 251
           ++P   +   L    +  L   +  N   L++LDLS  +IE I  ++ + L++L  L+L 
Sbjct: 29  DIPSSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILT 88

Query: 252 DCRRLKKL----CKDMGNLTKLHHLNNSNVGSLEEMLMLKSLVHLQGTLEIS--RLENVK 305
               ++         + +L  L     + + SLE    +  L+ L+  L ++   + + K
Sbjct: 89  GN-PIQSFSPGSFSGLTSLENL-VAVETKLASLES-FPIGQLITLK-KLNVAHNFIHSCK 144

Query: 306 GVGDASEVQLNSKVNLKALYLQWGVRDAVEPKTETQVIDMLKPHQKLELT---ITGYGGT 362
                     ++  NL  + L +     +       + +  + +  L+++   I      
Sbjct: 145 -----LPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSLNPID----- 194

Query: 363 KFPIWLGDSLFSKLMLLKFDNCGTCTSLPSVGQLPFLKDPVISGMGRVKIVGSEFYGSSC 422
               ++ D  F  + L +         L        +    +  +  + +          
Sbjct: 195 ----FIQDQAFQGIKLHELT-------LRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKD 243

Query: 423 SVSFPSLETLFFVDICSKLQGTLPERLLLLEKLNIFRCEQLLVTLQCLPALRELEIDGCK 482
             +    E      +C      +      L   N F     +V   CL  +  + + G  
Sbjct: 244 ERNLEIFEPSIMEGLCD-----VTIDEFRLTYTNDF--SDDIVKFHCLANVSAMSLAGVS 296

Query: 483 GVVLSSPTDLSSLK-LVHSRDMAKEVFEQGLPKLERLEIQHVREQTYLWRSETRLPQDIR 541
              L         + L   R   K+     LP L+ L +                     
Sbjct: 297 IKYLEDVPKHFKWQSLSIIRCQLKQFPTLDLPFLKSLTLTM------------------- 337

Query: 542 SLNRLQISRCPQLISLLRTVKIEDCNALESLPE-AWMHNSNSSLESLKIRSCNSLVSFP- 599
             N+  IS     +  L  + +   NAL      ++     +SL  L + S N  +    
Sbjct: 338 --NKGSISFKKVALPSLSYLDLSR-NALSFSGCCSYSDLGTNSLRHLDL-SFNGAIIMSA 393

Query: 600 DFALPSQLRTVTIKGCDALESLPEAWMQNSSTSLESLAIDSCDSLTYIARIQLP--PSLK 657
           +F    +L+ +  +    L+ + E     S   L  L I    +             SL 
Sbjct: 394 NFMGLEELQHLDFQHST-LKRVTEFSAFLSLEKLLYLDISYT-NTKIDFDGIFLGLTSLN 451

Query: 658 RLIIFRCDNLRFNSLRKLKISGGCPDLVSSPRFPASLTELKISDMPSLERLSSIGE---- 713
            L       +  NS           ++ ++     +LT L +S      +L  I      
Sbjct: 452 TL------KMAGNSF----KDNTLSNVFANTT---NLTFLDLSKC----QLEQISWGVFD 494

Query: 714 NLTSLKFLDLDN 725
            L  L+ L++ +
Sbjct: 495 TLHRLQLLNMSH 506

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 48.9 bits (117), Expect = 5e-06
 Identities = 78/494 (15%), Positives = 155/494 (31%), Gaps = 73/494 (14%)

Query: 193 LLNLPRLRVFSLRGYNI--FELPKAIENLKHLRFLDLSTTKIEILRESI-----NTLYNL 245
           +  L  L+  ++    I   +LP    NL +L  +DLS   I+ +  +            
Sbjct: 124 IGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVN 183

Query: 246 HTLLLEDCRRLKKLCKDMGNLTKLHHLNNSNVGSLEEMLMLKSLVHLQGTLEISRLENVK 305
            +L +     +  +        KLH L      +    +M   L +L G L + RL   +
Sbjct: 184 LSLDMSLN-PIDFIQDQAFQGIKLHELTLRGNFNSSN-IMKTCLQNLAG-LHVHRLILGE 240

Query: 306 GVGDASEVQLNSKVNLKALYLQWGVRDAVEPKTETQVIDMLKPHQKLE-LTITGYGGTKF 364
              + +       +      +             +  I        +  +++ G      
Sbjct: 241 FKDERNLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVKFHCLANVSAMSLAGVSIKYL 300

Query: 365 PIWLGDSLFSKLMLLKFDNCGTCTSLPSVGQLPFLKDPVISGMGRVKIVGSEFYGSSCSV 424
                     K   L    C      P++  LPFLK   ++         ++   S   V
Sbjct: 301 E---DVPKHFKWQSLSIIRCQ-LKQFPTLD-LPFLKSLTLT--------MNKGSISFKKV 347

Query: 425 SFPSLETLF-------FVDICSKLQGTLPERLLLLEKLNIFRCEQLLV--TLQCLPALRE 475
           + PSL  L        F   CS            L  L++     +++      L  L+ 
Sbjct: 348 ALPSLSYLDLSRNALSFSGCCSYSDLGTNS----LRHLDLSFNGAIIMSANFMGLEELQH 403

Query: 476 LEIDGCKGVVLSSPTDLSSLKLVHSRDMA--------KEVFEQGLPKLERLEIQHVREQT 527
           L+        ++  +   SL+ +   D++          +F  GL  L  L++     + 
Sbjct: 404 LDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIF-LGLTSLNTLKMAGNSFKD 462

Query: 528 YLWRSETRLPQDIRSLNRLQISRCPQLISL----------LRTVKIEDCNALESLPEAWM 577
               +   +  +  +L  L +S+C QL  +          L+ + +   N L  L  +  
Sbjct: 463 NTLSN---VFANTTNLTFLDLSKC-QLEQISWGVFDTLHRLQLLNMSH-NNLLFLDSSHY 517

Query: 578 HNSNSSLESLKIRSCNSLVSFPD--FALPSQLRTVTIKG------CDALESLPEAWMQNS 629
           +    SL +L     N + +        P  L    +        C+  + L   W++  
Sbjct: 518 NQ-LYSLSTLDCSF-NRIETSKGILQHFPKSLAFFNLTNNSVACICEHQKFL--QWVKEQ 573

Query: 630 STSLESLAIDSCDS 643
              L ++   +C +
Sbjct: 574 KQFLVNVEQMTCAT 587

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 46.6 bits (111), Expect = 2e-05
 Identities = 50/313 (15%), Positives = 99/313 (31%), Gaps = 51/313 (16%)

Query: 466 TLQCLPALRELEIDGCKGVVLSSP-----TDLSSLKLVHSR--DMAKEVFEQGLPKLERL 518
           +      L+ L++  C+   +          LS+L L  +     +   F  GL  LE L
Sbjct: 51  SFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSF-SGLTSLENL 109

Query: 519 EIQHVREQTYLWRSETRLPQDIRSLNRLQISRCPQLISL-----------LRTVKIEDCN 567
                   T L   E+     + +L +L ++    + S            L  V +   N
Sbjct: 110 VAVE----TKLASLESFPIGQLITLKKLNVAHN-FIHSCKLPAYFSNLTNLVHVDLSY-N 163

Query: 568 ALESLPE---AWMHNSNSSLESLKIRSCNSLVSFPDFAL-PSQLRTVTIKGCDALESLPE 623
            ++++      ++  +     SL + S N +    D A    +L  +T++G     ++ +
Sbjct: 164 YIQTITVNDLQFLRENPQVNLSLDM-SLNPIDFIQDQAFQGIKLHELTLRGNFNSSNIMK 222

Query: 624 AWMQN-SSTSLESLAIDSCDSLTYIARIQLPPSLKRLIIFRCDNLRFNSLRKLKIS---- 678
             +QN +   +  L +        +   + P  ++ L     D  R              
Sbjct: 223 TCLQNLAGLHVHRLILGEFKDERNLEIFE-PSIMEGLCDVTIDEFRLTYTNDFSDDIVKF 281

Query: 679 GGCPDL------------VSSPRFPASLTELKISDMPSLERLSSIGENLTSLKFLDLDNC 726
               ++            +           L I     L++  ++  +L  LK L L   
Sbjct: 282 HCLANVSAMSLAGVSIKYLEDVPKHFKWQSLSIIRC-QLKQFPTL--DLPFLKSLTLTMN 338

Query: 727 PKLKYFSKQGLPK 739
                F K  LP 
Sbjct: 339 KGSISFKKVALPS 351

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 58.1 bits (141), Expect = 6e-09
 Identities = 88/566 (15%), Positives = 170/566 (30%), Gaps = 94/566 (16%)

Query: 193 LLNLPRLRVFSLRGYNIFEL-PKAIENLKHLRFLDLSTTKI-EILRESINTLYNLHTLLL 250
             + P L+V  L    I  +   A ++L HL  L L+   I  +   + + L +L  L+ 
Sbjct: 48  FFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVA 107

Query: 251 EDCRRLKKLCKDMGNLTKLHHLN--NSNVGSLEEMLMLKSLVHLQGTLEISRLENVKGVG 308
            +          +G+L  L  LN  ++ + S +      +L +L+  L++S    ++ + 
Sbjct: 108 VETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLE-HLDLSSN-KIQSIY 165

Query: 309 DASEVQL-NSKVNLKALYLQWGVRDAVEPKT----ETQVIDMLKPHQKLELTITGYGGTK 363
                 L    +   +L L     + ++P          + +      L +  T   G  
Sbjct: 166 CTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQG-- 223

Query: 364 FPIWLGDSLFSKLMLLKFDNCGTCTSLPSVGQLPFLKDPVISGMGRVKIVGSEFYGSSCS 423
               L      +L+L +F N G          L  L +  I       +           
Sbjct: 224 ----LAGLEVHRLVLGEFRNEGNLEKFDK-SALEGLCNLTIEEFRLAYLDYYLDDIIDLF 278

Query: 424 VSFPSLETLFFVDICSKLQGTLP-ERLLLLEKLNIFRCEQLLVTLQCLPALRELEIDGCK 482
               ++ +   V     ++           + L +  C+        L +L+ L     K
Sbjct: 279 NCLTNVSSFSLVS--VTIERVKDFSYNFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNK 336

Query: 483 GVVLSSPTDLSSLKLV-------HSRDMAKEVFEQGLPKLERLEIQHVREQTYLWRSETR 535
           G    S  DL SL+ +         +    +    G   L+ L++               
Sbjct: 337 GGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDF-GTTSLKYLDLSF--------NGVIT 387

Query: 536 LPQDIRSLNRLQISRCPQLISLLRTVKIEDCNALESLPEAWMHNSNSSLESLKIRSCNSL 595
           +  +   L +L+       +           + L+ + E  +  S  +L  L I S    
Sbjct: 388 MSSNFLGLEQLEH------LDFQH-------SNLKQMSEFSVFLSLRNLIYLDI-SHTHT 433

Query: 596 VSFPDFALP--SQLRTVTIKGCDALESLPEAWMQNSSTSLESLAIDSCDSLTYIARIQLP 653
               +      S L  + + G    E+           +L  L +  C  L  ++     
Sbjct: 434 RVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTE-LRNLTFLDLSQC-QLEQLSPTAFN 491

Query: 654 --PSLKRLIIFRCDNLRFNSLRKLKISGGCPDLVSSPRFPASLTELKISDMPSLERL--- 708
              SL+ L      N+  N+   L                          + SL+ L   
Sbjct: 492 SLSSLQVL------NMSHNNFFSL--------------DTFPY-----KCLNSLQVLDYS 526

Query: 709 ---------SSIGENLTSLKFLDLDN 725
                      +    +SL FL+L  
Sbjct: 527 LNHIMTSKKQELQHFPSSLAFLNLTQ 552

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 57.3 bits (139), Expect = 1e-08
 Identities = 89/482 (18%), Positives = 161/482 (33%), Gaps = 75/482 (15%)

Query: 193 LLNLPRLRVFSLRGYNI--FELPKAIENLKHLRFLDLSTTKI-EILRESINTLYNLHTLL 249
           + +L  L+  ++    I  F+LP+   NL +L  LDLS+ KI  I    +  L+ +  L 
Sbjct: 120 IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLN 179

Query: 250 LE-DCRR--LKKLCKDMGNLTKLHHL---NNSNVGSLEEMLMLKSLVHLQG-TLEISRLE 302
           L  D     +  +        +LH L   NN +  ++ +   ++ L  L+   L +    
Sbjct: 180 LSLDLSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTC-IQGLAGLEVHRLVLGEFR 238

Query: 303 NVKGVGDASEVQLNSKVNLKALYLQWGVRDAVEPKTETQVIDMLKPHQKLE-LTITGYGG 361
           N   +    +  L    NL         R A        +ID+      +   ++     
Sbjct: 239 NEGNLEKFDKSALEGLCNLTIEEF----RLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTI 294

Query: 362 TKFPIWLGDSLFSKLMLLKFDNCGTCTSLPSVGQLPFLKDPVISGMGRVKIVGSEFYGSS 421
            +       S       L+  NC         GQ P L    +  + R+    ++   + 
Sbjct: 295 ERVK---DFSYNFGWQHLELVNC-------KFGQFPTL---KLKSLKRLTFTSNKGGNAF 341

Query: 422 CSVSFPSLETLFFVDICSKLQGTLPE---RLLLLEKLNIFRC--EQLLVTLQCLPALREL 476
             V  PSLE L         +G   +       L+ L++       +      L  L  L
Sbjct: 342 SEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHL 401

Query: 477 EIDGCKGVVLSSPTDLSSLKLVHS--------RDMAKEVFEQGLPKLERLEIQHVREQTY 528
           +        +S  +   SL+ +          R     +F  GL  LE L++        
Sbjct: 402 DFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIF-NGLSSLEVLKMAG------ 454

Query: 529 LWRSETRLPQDIRSLNRLQISRCPQLISLLRTVKIED--CNALESLPEAWMHNSNSSLES 586
                          N  Q +  P + + LR +   D     LE L     ++  SSL+ 
Sbjct: 455 ---------------NSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSL-SSLQV 498

Query: 587 LKIRSCNSLVSFPDFALP--SQLRTVTIKGCDALESLPEAWMQNSSTSLESLAID----S 640
           L +   N+  S   F     + L+ +       + +  +  +Q+  +SL  L +     +
Sbjct: 499 LNMSH-NNFFSLDTFPYKCLNSLQVLDYSLNH-IMTSKKQELQHFPSSLAFLNLTQNDFA 556

Query: 641 CD 642
           C 
Sbjct: 557 CT 558

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Length = 594

 Score = 56.4 bits (136), Expect = 2e-08
 Identities = 79/410 (19%), Positives = 132/410 (32%), Gaps = 70/410 (17%)

Query: 373 FSKLMLLKFDNCG--TCTSLPSVGQ-LPFLKDPVISGMGRVKIVGSEFYGSSCSVSFPSL 429
           F    +L   +C   +   L ++      LK+  +       + G     S    ++ SL
Sbjct: 129 FKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWL--SHFPDTYTSL 186

Query: 430 ETLFFVDICSKLQG----TLPERLLLLEKLNIFRC---EQLLVTLQCLPALRELEIDGCK 482
            +L    + S++       L  R   L+ L + R    E+L   LQ  P L EL   G  
Sbjct: 187 VSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAVPLEKLATLLQRAPQLEELGTGGYT 246

Query: 483 -----GVVLSSPTDLSSLKLVHSRDMAKEVFEQGL-------PKLERLEIQHVREQTYLW 530
                 V       LS  K +       +     L        +L  L + +   Q+   
Sbjct: 247 AEVRPDVYSGLSVALSGCKELRCLSGFWDAVPAYLPAVYSVCSRLTTLNLSYATVQS--- 303

Query: 531 RSETRLPQDIRSLNRLQISRCPQLISLLRTVKIEDCNALESLPEAWMHNSNSSLESLKIR 590
                   D+  L    + +CP+L  L     IED   LE L       +   L  L++ 
Sbjct: 304 -------YDLVKL----LCQCPKLQRLWVLDYIED-AGLEVLAS-----TCKDLRELRVF 346

Query: 591 SCNSLVSFPDFALPSQLRTVTIKGCDALESLPEAWMQNSSTSLESLAIDSCDSLTYIARI 650
                V  P+ AL              L S+           LES+ +  C  +T  A I
Sbjct: 347 PSEPFVMEPNVAL----------TEQGLVSVS-----MGCPKLESV-LYFCRQMTNAALI 390

Query: 651 QLPPSLKRLIIFRCDNLRFNSLRKLKISGGCPDLVSSPRFPASLTELKISDMPSLERLSS 710
            +  +   +  FR   +   +   L +        +       L  L +S + + +    
Sbjct: 391 TIARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSGLLTDKVFEY 450

Query: 711 IGENLTSLKFLDLDNCPKLKYFSKQGLP------KSLLRLIIDECPLIEK 754
           IG     ++ L +         S  G+        SL +L I +CP  +K
Sbjct: 451 IGTYAKKMEMLSVAFAG----DSDLGMHHVLSGCDSLRKLEIRDCPFGDK 496

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Length = 594

 Score = 49.5 bits (118), Expect = 3e-06
 Identities = 41/293 (13%), Positives = 87/293 (29%), Gaps = 58/293 (19%)

Query: 454 KLNIFRCEQLLVT--LQCLPALRELEIDGCKGVVLSSPTDLSSLKLVHSRDMAKEVFEQG 511
           K+ I  C  +     ++  P +R +E+ G       +  +L             E     
Sbjct: 47  KVFIGNCYAVSPATVIRRFPKVRSVELKGKPHF---ADFNLVPDGWGGYVYPWIEAMSSS 103

Query: 512 LPKLERLEIQHVREQTYLWRSETRLPQDIRSLNRLQISRCPQL-----------ISLLRT 560
              LE + ++ +            + +  ++   L +S C                 L+ 
Sbjct: 104 YTWLEEIRLKRMVVTD---DCLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKE 160

Query: 561 VKIEDCNALESLPEAWMH--NSNSSLESLKIRSCNSLVSFPDF-ALPS---QLRTVTIKG 614
           + + + +  +       H  ++ +SL SL I    S VSF     L +    L+++ +  
Sbjct: 161 LDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNR 220

Query: 615 CDALESLPEAWMQNSSTSLESLAIDSCDSLTYIARIQLPPSLKRLIIFRCDNLRFNSLRK 674
              LE L        +  LE L      +              R  ++   ++  +  ++
Sbjct: 221 AVPLEKLATLLQ--RAPQLEELGTGGYTAEV------------RPDVYSGLSVALSGCKE 266

Query: 675 LKISGGCPDLVSSPRFPASLTELKISDMPSLERLSSIGENLTSLKFLDLDNCP 727
           L+   G  D                        L ++    + L  L+L    
Sbjct: 267 LRCLSGFWDA-------------------VPAYLPAVYSVCSRLTTLNLSYAT 300

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Length = 594

 Score = 46.4 bits (110), Expect = 3e-05
 Identities = 37/254 (14%), Positives = 85/254 (33%), Gaps = 36/254 (14%)

Query: 486 LSSPTDLSSLKLVHSRDMAKEVFEQGLPKLERLEIQHVREQTYLWRSETRLPQDIRSLNR 545
           +    D +S+ LV  +   +         +ER   + V        S   + +    +  
Sbjct: 21  IQLDKDRNSVSLV-CKSWYE---------IERWCRRKVFIGNCYAVSPATVIRRFPKVRS 70

Query: 546 LQISRCPQLISLLRTVKIEDCNALESLPEAWMHNSNSSLESLKIRSC----NSLVSFPDF 601
           +++   P        +  +            M +S + LE ++++      + L      
Sbjct: 71  VELKGKPHFADF--NLVPDGWGGYVYPWIEAMSSSYTWLEEIRLKRMVVTDDCLELIAKS 128

Query: 602 ALPSQLRTVTIKGCDALESLPEAWMQNSSTSLESLAIDSCD----SLTYIARI-QLPPSL 656
                 + + +  C+   +   A +  +  +L+ L +   D    S  +++       SL
Sbjct: 129 F--KNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTYTSL 186

Query: 657 KRLIIFRC-DNLRFNSLRKLKISGGCPDLVSSPRFPASLTELKISDMPSLERLSSIGENL 715
             L I      + F++L +L     CP          +L  LK++    LE+L+++ +  
Sbjct: 187 VSLNISCLASEVSFSALERL--VTRCP----------NLKSLKLNRAVPLEKLATLLQRA 234

Query: 716 TSLKFLDLDNCPKL 729
             L+ L        
Sbjct: 235 PQLEELGTGGYTAE 248

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 50.8 bits (122), Expect = 2e-07
 Identities = 28/105 (26%), Positives = 40/105 (38%), Gaps = 3/105 (2%)

Query: 191 QRLLNLPRLRVFSLRGYNIFELPKAIENLKHLRFLDLSTTKIEILRESINTLYNLHTLLL 250
            +  N  R R   LRGY I  +      L     +D S  +I  L +    L  L TLL+
Sbjct: 13  AQYTNAVRDRELDLRGYKIPVIENLGATLDQFDAIDFSDNEIRKL-DGFPLLRRLKTLLV 71

Query: 251 EDCRRLKKLCKDMGNLTKLHHLNNSN--VGSLEEMLMLKSLVHLQ 293
            + R  +        L  L  L  +N  +  L ++  L SL  L 
Sbjct: 72  NNNRICRIGEGLDQALPDLTELILTNNSLVELGDLDPLASLKSLT 116

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 52.5 bits (127), Expect = 2e-07
 Identities = 26/139 (18%), Positives = 59/139 (42%), Gaps = 21/139 (15%)

Query: 193 LLNLPRLRVFSLRGYNIFELPKAIENLKHLRFLDLSTTKIEILRESINTLYNLHTLLLED 252
           L NL ++   +L   +       + N+  L +L ++ +K++ +   I  L +L++L L  
Sbjct: 128 LANLTKMYSLNLGANHNLSDLSPLSNMTGLNYLTVTESKVKDV-TPIANLTDLYSLSLNY 186

Query: 253 CRRLKKLCKDMGNLTKLHHL---NN--SNVGSLEEMLMLKSLVHLQGTLEISRLENVKGV 307
             +++ +   + +LT LH+     N  +++  +  M  L SL  +    +I+ L  +  +
Sbjct: 187 N-QIEDI-SPLASLTSLHYFTAYVNQITDITPVANMTRLNSL-KIGNN-KITDLSPLANL 242

Query: 308 GDASEVQLNSKVNLKALYL 326
                        L  L +
Sbjct: 243 -----------SQLTWLEI 250

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 52.2 bits (126), Expect = 3e-07
 Identities = 29/106 (27%), Positives = 49/106 (46%), Gaps = 7/106 (6%)

Query: 190 LQRLLNLPRLRVFSLRGYNIFELPKAIENLKHLRFLDLSTTKIEILRESINTLYNLHTLL 249
           +Q +  L  L   +L G  I ++   + NL  L  L + T KI  +  ++  L NL  L 
Sbjct: 59  IQGIEYLTNLEYLNLNGNQITDIS-PLSNLVKLTNLYIGTNKITDI-SALQNLTNLRELY 116

Query: 250 LEDCRRLKKLCKDMGNLTKLHHLN---NSNVGSLEEMLMLKSLVHL 292
           L +   +  +   + NLTK++ LN   N N+  L  +  +  L +L
Sbjct: 117 LNED-NISDI-SPLANLTKMYSLNLGANHNLSDLSPLSNMTGLNYL 160

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 48.7 bits (117), Expect = 4e-06
 Identities = 25/141 (17%), Positives = 54/141 (38%), Gaps = 16/141 (11%)

Query: 188 NVLQRLLNLPRLRVFSLRGYNIFELPKAIENLKHLRFLDLSTTKIEILRESINTLYNLHT 247
           N +    +L       L+  ++ ++    E L+ +  L ++  K+  + + I  L NL  
Sbjct: 13  NQIFPDADLAEGIRAVLQKASVTDVV-TQEELESITKLVVAGEKVASI-QGIEYLTNLEY 70

Query: 248 LLLEDCRRLKKLCKDMGNLTKLHHLNNSN--VGSLEEMLMLKSLVHLQGTLEISRLENVK 305
           L L    ++  +   + NL KL +L      +  +  +  L +L  L   L    + ++ 
Sbjct: 71  LNLNGN-QITDI-SPLSNLVKLTNLYIGTNKITDISALQNLTNLRELY--LNEDNISDIS 126

Query: 306 GVGDASEVQLNSKVNLKALYL 326
                    L +   + +L L
Sbjct: 127 P--------LANLTKMYSLNL 139

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 45.6 bits (109), Expect = 4e-05
 Identities = 27/137 (19%), Positives = 59/137 (43%), Gaps = 15/137 (10%)

Query: 193 LLNLPRLRVFSLRGYNIFELPKAIENLKHLRFLDLSTTKIEILRESINTLYNLHTLLLED 252
           L NL  LR   L   NI ++   + NL  +  L+L           ++ +  L+ L + +
Sbjct: 106 LQNLTNLRELYLNEDNISDIS-PLANLTKMYSLNLGANHNLSDLSPLSNMTGLNYLTVTE 164

Query: 253 CRRLKKLCKDMGNLTKLHHLN--NSNVGSLEEMLMLKSLVHLQGTLEISRLENVKGVGDA 310
             ++K +   + NLT L+ L+   + +  +  +  L SL +   T  ++++ ++  V + 
Sbjct: 165 S-KVKDV-TPIANLTDLYSLSLNYNQIEDISPLASLTSLHYF--TAYVNQITDITPVANM 220

Query: 311 SEVQLNSKVNLKALYLQ 327
           +         L +L + 
Sbjct: 221 T--------RLNSLKIG 229

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 44.1 bits (105), Expect = 1e-04
 Identities = 21/102 (20%), Positives = 48/102 (47%), Gaps = 4/102 (3%)

Query: 193 LLNLPRLRVFSLRGYNIFELPKAIENLKHLRFLDLSTTKIEILRESINTLYNLHTLLLED 252
           L NL +L    +    I ++  A+++L  L+ L++ + +I  +   +N L  L++L L +
Sbjct: 239 LANLSQLTWLEIGTNQISDIN-AVKDLTKLKMLNVGSNQISDI-SVLNNLSQLNSLFLNN 296

Query: 253 CRRLKKLCKDMGNLTKLHHLN--NSNVGSLEEMLMLKSLVHL 292
            +   +  + +G LT L  L    +++  +  +  L  +   
Sbjct: 297 NQLGNEDMEVIGGLTNLTTLFLSQNHITDIRPLASLSKMDSA 338

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 42.9 bits (102), Expect = 2e-04
 Identities = 29/137 (21%), Positives = 61/137 (44%), Gaps = 16/137 (11%)

Query: 193 LLNLPRLRVFSLRGYNIFELPKAIENLKHLRFLDLSTTKIEILRESINTLYNLHTLLLED 252
           + N+ RL    +    I +L   + NL  L +L++ T +I  +  ++  L  L  L +  
Sbjct: 217 VANMTRLNSLKIGNNKITDLS-PLANLSQLTWLEIGTNQISDI-NAVKDLTKLKMLNVGS 274

Query: 253 CRRLKKLCKDMGNLTKLHHLN-NSNVGSLEEMLMLKSLVHLQGTLEIS--RLENVKGVGD 309
             ++  +   + NL++L+ L  N+N    E+M ++  L +L  TL +S   + +++    
Sbjct: 275 N-QISDI-SVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLT-TLFLSQNHITDIRP--- 328

Query: 310 ASEVQLNSKVNLKALYL 326
                L S   + +   
Sbjct: 329 -----LASLSKMDSADF 340

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 50.7 bits (122), Expect = 2e-07
 Identities = 25/140 (17%), Positives = 51/140 (36%), Gaps = 21/140 (15%)

Query: 195 NLPRLRVFSLRGYNIFELPKAIENLKHLRFLDLSTTKIEILRESINTLYNLHTLLLEDCR 254
            +  L   +L   N+ +L   IE   +++ L ++          I+ L NL  L +    
Sbjct: 42  QMNSLTYITLANINVTDL-TGIEYAHNIKDLTINNIHATNY-NPISGLSNLERLRIMGKD 99

Query: 255 RLKKLCKDMGNLTKLHHLN-------NSNVGSLEEMLMLKSLVHLQGTLEISRLENVKGV 307
                  ++  LT L  L+       +S +  +  +  + S+  L     I+ +  +K +
Sbjct: 100 VTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSI-DLSYNGAITDIMPLKTL 158

Query: 308 GDASEVQLNSKVNLKALYLQ 327
                        LK+L +Q
Sbjct: 159 -----------PELKSLNIQ 167

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 48.8 bits (117), Expect = 1e-06
 Identities = 21/135 (15%), Positives = 53/135 (39%), Gaps = 13/135 (9%)

Query: 195 NLPRLRVFSLRGYNIFELPKAIENLKHLRFLDLSTTKIEILR-ESINTLYNLHTLLLEDC 253
               ++  ++   +       I  L +L  L +    +   +  +++ L +L  L +   
Sbjct: 64  YAHNIKDLTINNIHATNY-NPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHS 122

Query: 254 RRLKKLCKDMGNLTKLHHLNNSNVGSLEEMLMLKSLVHLQGTLEIS--RLENVKGVGDAS 311
                +   +  L K++ ++ S  G++ +++ LK+L  L+ +L I    + + +G     
Sbjct: 123 AHDDSILTKINTLPKVNSIDLSYNGAITDIMPLKTLPELK-SLNIQFDGVHDYRG----- 176

Query: 312 EVQLNSKVNLKALYL 326
              +     L  LY 
Sbjct: 177 ---IEDFPKLNQLYA 188

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 53.1 bits (128), Expect = 3e-07
 Identities = 17/104 (16%), Positives = 30/104 (28%), Gaps = 8/104 (7%)

Query: 193 LLNLPRLRVFSLRGYNIFELPKAIENLKHLRFLDLSTTKIEILRESINTLYNLHTLLLED 252
                +         NI  + KA+  L  LR   +  +       + N          E 
Sbjct: 179 SRITLKDTQIGQLSNNITFVSKAVMRLTKLRQFYMGNSPF----VAENICEAWENENSEY 234

Query: 253 CRRLKKLCKDMGNLTKLHHL---NNSNVGSL-EEMLMLKSLVHL 292
            ++ K       NL  L  +   N  N+  L   +  L  +  +
Sbjct: 235 AQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLI 278

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 49.3 bits (118), Expect = 4e-06
 Identities = 78/590 (13%), Positives = 167/590 (28%), Gaps = 123/590 (20%)

Query: 193 LLNLPRLRVFSLRGYNIF-ELPKAIENLKHLRFLDLSTTKIEILR-----ESINTLYNLH 246
           L +  R+   SL G+     +P AI  L  L  L L +   ++       + I+   +  
Sbjct: 77  LNSNGRVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDE 136

Query: 247 TLLLEDCRRLKKLCKDMG-----NLTKLHHLNNSNVGSLEEMLMLKSLVHLQGTLEISRL 301
                     K            +L K    ++    S+++   + +L   Q     + +
Sbjct: 137 QKQKMRMHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIKKSSRI-TLKDTQIGQLSNNI 195

Query: 302 ENV-KGVGDASEVQLNSKVNLKALYLQWGVRDAVEPKTETQVIDMLKPHQKLELTITGYG 360
             V K V   +         L+  Y+      A                 + E +     
Sbjct: 196 TFVSKAVMRLT--------KLRQFYMGNSPFVAENICEA----------WENENSEYAQQ 237

Query: 361 GTKFPIWLGDSLFSKLMLLKFDNCGTCTSLP-SVGQLPFLKDPVISGMGRVKIVGSEFYG 419
                +   +     L  ++  NC   T LP  +  LP ++  +I+ +   + +  E   
Sbjct: 238 YKTEDLKWDN--LKDLTDVEVYNCPNLTKLPTFLKALPEMQ--LIN-VACNRGISGEQLK 292

Query: 420 SSCSVSFPSLETLFFVDICSKLQ-----------GTLPERLLLLEKLNIFRC-----EQL 463
                       L    +  K+Q             +   L  ++KL +  C     E  
Sbjct: 293 DDWQ-------ALADAPVGEKIQIIYIGYNNLKTFPVETSLQKMKKLGMLECLYNQLEGK 345

Query: 464 LVTLQCLPALRELEIDGCK--GV---VLSSPTDLSSLKLVHSR--DMAKEVFEQGLPKLE 516
           L        L  L +   +   +          + +L   H++   +      + +  + 
Sbjct: 346 LPAFGSEIKLASLNLAYNQITEIPANFCGFTEQVENLSFAHNKLKYIPNIFDAKSVSVMS 405

Query: 517 RLEIQHVREQTYLWRSETRLPQDIRSLNRLQISRCPQLISLLRTVKIEDCNALESLPEAW 576
            ++  +    +   ++   L         +        I+L         N +   P+  
Sbjct: 406 AIDFSYNEIGSVDGKNFDPLDPTPFKGINVSS------INL-------SNNQISKFPKEL 452

Query: 577 MHNSNSSLESLKIRSCNSLVSFPDFALPSQLRTVTIKGCDALESL----------PEAWM 626
                S L S+ +   N L   P  +L  +      K    L S+           + + 
Sbjct: 453 FSTG-SPLSSINL-MGNMLTEIPKNSLKDEN--ENFKNTYLLTSIDLRFNKLTKLSDDFR 508

Query: 627 QNSSTSLESLAIDSCDSLTYI-ARIQLPPSLKRLIIFRCDNLRFNSLRKLKISGGCPDLV 685
             +   L  + +    S +    +     +LK   I    + + N   +           
Sbjct: 509 ATTLPYLVGIDLSYN-SFSKFPTQPLNSSTLKGFGIRNQRDAQGNRTLRE---------- 557

Query: 686 SSPRFPASLTELKISDMPSLE-------RLSSI-GENLTSLKFLDLDNCP 727
               +P       I+  PSL         +  +  +   ++  LD+ + P
Sbjct: 558 ----WPEG-----ITLCPSLTQLQIGSNDIRKVNEKITPNISVLDIKDNP 598

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 44.3 bits (105), Expect = 1e-04
 Identities = 14/119 (11%), Positives = 44/119 (36%), Gaps = 9/119 (7%)

Query: 188 NVLQRLLNLPRLRVFSLRGYNIFEL--PKAIENLKHLRFLDLSTTKIEILRESINTLYNL 245
             L       ++++  +   N+       +++ +K L  L+    ++E    +  +   L
Sbjct: 296 QALADAPVGEKIQIIYIGYNNLKTFPVETSLQKMKKLGMLECLYNQLEGKLPAFGSEIKL 355

Query: 246 HTLLLEDCRRLKKL----CKDMGNLTKLHHLNNSNVGSLEEMLMLKSLVHLQGTLEISR 300
            +L L    ++ ++    C     +  L    ++ +  +  +   KS+  +   ++ S 
Sbjct: 356 ASLNLAYN-QITEIPANFCGFTEQVENL-SFAHNKLKYIPNIFDAKSVSVMS-AIDFSY 411

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 49.7 bits (119), Expect = 4e-07
 Identities = 26/120 (21%), Positives = 43/120 (35%), Gaps = 5/120 (4%)

Query: 178 EDTPEGERRQNVLQRLLNLPRLR--VFSLRGYNIFELPKAIENLKHLRFLDLSTTKIEIL 235
               + +RR ++  R      +R  V      N  ++        +L FL L    +  +
Sbjct: 5   SSGMDMKRRIHLELRNRTPAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV 64

Query: 236 RESINTLYNLHTLLLEDCRRLKKLCKDMGNLTKLHHLNNSN--VGSLEEMLMLKSLVHLQ 293
             ++  L  L  L L + R    L      L  L HLN S   +  +  +  LK L  L+
Sbjct: 65  -SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLNLSGNKLKDISTLEPLKKLECLK 123

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Length = 592

 Score = 51.1 bits (122), Expect = 1e-06
 Identities = 44/317 (13%), Positives = 86/317 (27%), Gaps = 48/317 (15%)

Query: 423 SVSFPSLETLFFVDICSKLQGTLPERLLLLEKLNIFRCEQ-----LLVTLQCLPALRELE 477
             +  +L    +    +     +   L  L+ ++  R          +       L  L+
Sbjct: 85  RAAMFNLIPENWGGYVTPWVTEISNNLRQLKSVHFRRMIVSDLDLDRLAKARADDLETLK 144

Query: 478 IDGCKGVVLSSPTDLSSLKLVHSRDMAKEVFEQGLPKLERLEIQHVREQTYLWRSETRLP 537
           +D C G      T    L +V               K++ L ++         +    L 
Sbjct: 145 LDKCSGF-----TTDGLLSIV-----------THCRKIKTLLMEESSFSEKDGKWLHELA 188

Query: 538 QDIRSLNRLQISRCPQLISLLRTVKIEDCNALESLPEAWMHNSNSSLESLKIRSCNSLVS 597
           Q   SL  L               KI     LE++       +  SL S+K+     L  
Sbjct: 189 QHNTSLEVLNFYMT-------EFAKISP-KDLETIAR-----NCRSLVSVKVGDFEILEL 235

Query: 598 FPDFALPSQLRTVTIKGCDALESLPEAWMQ-NSSTSLESLAIDSCDSLTYIARIQLPPSL 656
              F   + L        +    +PE +M       L  L +                 +
Sbjct: 236 VGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGPNEMPILFPFAAQI 295

Query: 657 KRLIIFRCDNLRFNSLRKLKISGGCPDLVSSPRFPASLTELKISDMPSLERLSSIGENLT 716
           ++L +         +     +   CP          +L  L+  ++     L  + +   
Sbjct: 296 RKLDLLYALLE---TEDHCTLIQKCP----------NLEVLETRNVIGDRGLEVLAQYCK 342

Query: 717 SLKFLDLDNCPKLKYFS 733
            LK L ++     +   
Sbjct: 343 QLKRLRIERGADEQGME 359

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Length = 592

 Score = 47.2 bits (112), Expect = 2e-05
 Identities = 44/276 (15%), Positives = 89/276 (32%), Gaps = 34/276 (12%)

Query: 474 RELEIDGCKGVVLSSPTDLSSLKLVHSRDMAKEVFEQGLPKLERLEIQHVREQTYLWRSE 533
            +++ +  + V ++     +  +L       + +  +G P+     +       Y+    
Sbjct: 45  FKIDSETREHVTMALCYTATPDRLSRRFPNLRSLKLKGKPRAAMFNLIPENWGGYVTPWV 104

Query: 534 TRLPQDIRSLNRLQISRCPQLISLLRTVKIEDCNALESLPEAWMHN-SNSSLESLKIRSC 592
           T +  ++R L  +   R       L  +     + LE+L        +   L S+ +  C
Sbjct: 105 TEISNNLRQLKSVHFRRMIVSDLDLDRLAKARADDLETLKLDKCSGFTTDGLLSI-VTHC 163

Query: 593 NSLVSFPDFALPSQLRTVTIKGCDALESLPEAWMQNSSTSLESLAIDSCD-------SLT 645
             + +     L  +  + + K    L  L +      +TSLE L     +        L 
Sbjct: 164 RKIKT-----LLMEESSFSEKDGKWLHELAQ-----HNTSLEVLNFYMTEFAKISPKDLE 213

Query: 646 YIARIQLPPSLKRLIIFRCDNL-------RFNSLRKLKISG-----GCPDLVSSPRFPAS 693
            IAR     SL  + +   + L          +L +          G P+   +  FP  
Sbjct: 214 TIAR--NCRSLVSVKVGDFEILELVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRK 271

Query: 694 LTELKISDMPSLERLSSIGENLTSLKFLDLDNCPKL 729
           L  L +S M     +  +      ++ LDL      
Sbjct: 272 LCRLGLSYM-GPNEMPILFPFAAQIRKLDLLYALLE 306

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Length = 592

 Score = 45.7 bits (108), Expect = 5e-05
 Identities = 55/356 (15%), Positives = 103/356 (28%), Gaps = 75/356 (21%)

Query: 427 PSLETLF-----FVDICSKLQGTLPERLLLLEKLNIFRCEQLLVTLQCLPALRELEIDGC 481
             ++TL      F +   K    L +    LE LN +  E   ++ + L  +       C
Sbjct: 164 RKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIAR----NC 219

Query: 482 KGVVLSSPTDLSSLKLVHSRDMAKEVFEQGLPKLERLEIQHVREQTYLWRSETRLPQDIR 541
           +         L S+K+     +    F +    LE      + E   +      L    R
Sbjct: 220 R--------SLVSVKVGDFEILELVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVF-PR 270

Query: 542 SLNRLQISR------------CPQLISL-LRTVKIEDCNALESLPEAWMHNSNSSLESLK 588
            L RL +S               Q+  L L    +E  +    + +        +LE L+
Sbjct: 271 KLCRLGLSYMGPNEMPILFPFAAQIRKLDLLYALLETEDHCTLIQKC------PNLEVLE 324

Query: 589 IRSCNSLVSFPDFALP-SQLRTVTIKGCDALESLPEAWMQNSSTSLESLAIDSCDSLTYI 647
            R+          A    QL+ + I+     + + +     S   L +LA   C  L Y+
Sbjct: 325 TRNVIGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALA-QGCQELEYM 383

Query: 648 -------------ARIQLPPSLKRLIIFRCDNL-----------------RFNSLRKLKI 677
                        +      +L    +   D                       LR+   
Sbjct: 384 AVYVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAF 443

Query: 678 SGGCP-----DLVSSPRFPASLTELKISDMP-SLERLSSIGENLTSLKFLDLDNCP 727
                      L    ++  ++  + +  +  S E L        +L+ L++  C 
Sbjct: 444 YLRQGGLTDLGLSYIGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCC 499

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Length = 592

 Score = 44.5 bits (105), Expect = 1e-04
 Identities = 57/402 (14%), Positives = 139/402 (34%), Gaps = 52/402 (12%)

Query: 374 SKLMLLKFDNCG----TCTSLPSVGQ-LPFLKDPVISGMGRVKIVGSEFYGSSCSVSFPS 428
           + L +L F        +   L ++ +    L    +     +++VG     ++    F  
Sbjct: 192 TSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILELVGFFKAAANLE-EFCG 250

Query: 429 LETLFFVDICSKLQGTLPERLLLLEKLNIFRCEQLLVTLQCLPALRELEIDGCKGV---- 484
                 + +  K    +  R L    L+     ++ +       +R+L++          
Sbjct: 251 GSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGPNEMPILFPFAAQIRKLDLLYALLETEDH 310

Query: 485 --VLSSPTDLSSLKLVHS-RDMAKEVFEQGLPKLERLEIQHVREQTYLWRSETRLPQDIR 541
             ++    +L  L+  +   D   EV  Q   +L+RL I+   ++  +   E  + Q  R
Sbjct: 311 CTLIQKCPNLEVLETRNVIGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQ--R 368

Query: 542 SLNRLQISRCPQLISL-LRTVKIEDCNALESLPEAWMHNSNSSLESLKIRSCNSLVSFPD 600
            L  L    C +L  + +    I +  +LES+          +L   ++   +      D
Sbjct: 369 GLIAL-AQGCQELEYMAVYVSDITN-ESLESIGTYL-----KNLCDFRLVLLDREERITD 421

Query: 601 FALPSQLRTVTIKGCDALESLPEAWMQNSSTSLESLAIDSCDSLTYIARIQLPPSLKRLI 660
             L + +R++ + GC  L           +  L    + +   L+YI +    P+++ ++
Sbjct: 422 LPLDNGVRSL-LIGCKKLRRF--------AFYLRQGGL-TDLGLSYIGQ--YSPNVRWML 469

Query: 661 IFRCDNL---------RFNSLRKLKISGGCP----DLVSSPRFPASLTELKISDMPSL-- 705
           +                  +L+KL++ G C      + ++     SL  L +    +   
Sbjct: 470 LGYVGESDEGLMEFSRGCPNLQKLEMRG-CCFSERAIAAAVTKLPSLRYLWVQGYRASMT 528

Query: 706 -ERLSSIGENLTSLKFLDLDNCPKLKYFSKQGLPKSLLRLII 746
            + L  +     +++ +     P++    +    +    ++ 
Sbjct: 529 GQDLMQMARPYWNIELIPSRRVPEVNQQGEIREMEHPAHILA 570

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 47.7 bits (114), Expect = 1e-06
 Identities = 26/114 (22%), Positives = 41/114 (35%), Gaps = 5/114 (4%)

Query: 184 ERRQNVLQRLLNLPRLR--VFSLRGYNIFELPKAIENLKHLRFLDLSTTKIEILRESINT 241
            RR ++  R      ++  V      N  +L    +  + L FL      +  +  ++  
Sbjct: 4   GRRIHLELRNRTPSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI-ANLPK 62

Query: 242 LYNLHTLLLEDCRRLKKLCKDMGNLTKLHHLNNSN--VGSLEEMLMLKSLVHLQ 293
           L  L  L L D R    L         L HLN S   +  L  +  LK L +L+
Sbjct: 63  LNKLKKLELSDNRVSGGLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLK 116

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 50.9 bits (121), Expect = 1e-06
 Identities = 30/140 (21%), Positives = 59/140 (42%), Gaps = 22/140 (15%)

Query: 193 LLNLPRLRVFSLRGYNIFELPKAIENLKHLRFLDLSTTKIEILRESINTLYNLHTLLLED 252
              L  +        +I  + + I+ L ++  L L+  K+  + + +  L NL  L L++
Sbjct: 39  QNELNSIDQIIANNSDIKSV-QGIQYLPNVTKLFLNGNKLTDI-KPLTNLKNLGWLFLDE 96

Query: 253 CRRLKKLCKDMGNLTKLHHL---NN--SNVGSLEEMLMLKSLVHLQGTLEISRLENVKGV 307
             ++K L   + +L KL  L   +N  S++  L  +  L+SL +L    +I+ +      
Sbjct: 97  N-KIKDL-SSLKDLKKLKSLSLEHNGISDINGLVHLPQLESL-YLGNN-KITDITV---- 148

Query: 308 GDASEVQLNSKVNLKALYLQ 327
                  L+    L  L L+
Sbjct: 149 -------LSRLTKLDTLSLE 161

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 46.3 bits (109), Expect = 3e-05
 Identities = 22/113 (19%), Positives = 43/113 (38%), Gaps = 9/113 (7%)

Query: 190 LQRLLNLPRLRVFSLRGYNIFELPKAIENLKHLRFLDLSTTKIEILRESINTLYNLHTLL 249
           +  L++LP+L    L    I ++   +  L  L  L L   +I  +   +  L  L  L 
Sbjct: 124 INGLVHLPQLESLYLGNNKITDIT-VLSRLTKLDTLSLEDNQISDI-VPLAGLTKLQNLY 181

Query: 250 LEDCR--RLKKLCKDMGNLTKLHHLNN----SNVGSLEEMLMLKSLVHLQGTL 296
           L       L+ L   + NL  L   +       +     +++  ++ +  G+L
Sbjct: 182 LSKNHISDLRAL-AGLKNLDVLELFSQECLNKPINHQSNLVVPNTVKNTDGSL 233

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 50.1 bits (119), Expect = 2e-06
 Identities = 26/126 (20%), Positives = 45/126 (35%), Gaps = 6/126 (4%)

Query: 177 MEDTPEGERRQNVLQRLLNLPRLRVFSLRGYNIFELPKAIENLKHLRFLDLSTTKIEILR 236
             D    +         +    +RV  L   ++  L   +E L  +  LDLS  ++  L 
Sbjct: 421 YLDDLRSKFLLENSVLKMEYADVRVLHLAHKDLTVLC-HLEQLLLVTHLDLSHNRLRALP 479

Query: 237 ESINTLYNLHTLLLEDCRRLKKLCKDMGNLTKLH--HLNNSNVGSLEEMLMLKSLVHLQG 294
            ++  L  L  L   D   L+ +   + NL +L    L N+ +     +  L S   L  
Sbjct: 480 PALAALRCLEVLQASDN-ALENV-DGVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLV- 536

Query: 295 TLEISR 300
            L +  
Sbjct: 537 LLNLQG 542

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 49.3 bits (118), Expect = 3e-06
 Identities = 16/85 (18%), Positives = 31/85 (36%), Gaps = 2/85 (2%)

Query: 193 LLNLPRLRVFSLRGYNIFELPK-AIENLKHLRFLDLSTTKIEILRESINTLYNLHTLLLE 251
           LLN P L    L    + ++       ++ L  L +S  ++  L      +  L  L L 
Sbjct: 244 LLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVALNLYGQPIPTLKVLDLS 303

Query: 252 DCRRLKKLCKDMGNLTKLHHLNNSN 276
               L  + ++     +L +L   +
Sbjct: 304 HN-HLLHVERNQPQFDRLENLYLDH 327

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 47.3 bits (113), Expect = 1e-05
 Identities = 14/79 (17%), Positives = 27/79 (34%), Gaps = 3/79 (3%)

Query: 195 NLPRLRVFSLRGYNIFELPKAIENLKHLRFLDLSTTKIEILRESINTLYNLHTLLLEDCR 254
            + RL    +    +  L    + +  L+ LDLS   +  +  +      L  L L+   
Sbjct: 270 KMQRLERLYISNNRLVALNLYGQPIPTLKVLDLSHNHLLHVERNQPQFDRLENLYLDHN- 328

Query: 255 RLKKLCKDMGNLTKLHHLN 273
            +  L   +     L +L 
Sbjct: 329 SIVTL--KLSTHHTLKNLT 345

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 49.6 bits (119), Expect = 3e-06
 Identities = 26/104 (25%), Positives = 43/104 (41%), Gaps = 5/104 (4%)

Query: 195 NLPRLRVFSLRGYNIFELPKAIENLKHLRFLDLSTTKI-EILRESINTLYNLHTLLLEDC 253
               L+   L   ++ ELP  +  L  L+ L LS  K   + + S +   +L  L ++  
Sbjct: 276 CFSGLQELDLTATHLSELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGN 335

Query: 254 RRLKKLCKDM-GNLTKLHHLN---NSNVGSLEEMLMLKSLVHLQ 293
            +  +L      NL  L  L+   +    S    L L++L HLQ
Sbjct: 336 TKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQ 379

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 48.5 bits (116), Expect = 6e-06
 Identities = 85/496 (17%), Positives = 160/496 (32%), Gaps = 74/496 (14%)

Query: 193 LLNLPRLRVFSLRGYNIFELPK-AIENLKHLRFLDLSTTKI-EILRESINTLYNLHTLLL 250
           L N   L    L   +I  +        + L+ LD     I  + +E +++L     L L
Sbjct: 125 LHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSL 184

Query: 251 EDCR-RLKKLCKDMGNLTKLHHLN---NSNVGSLEEMLMLKSLVHLQGTLEISRLENVKG 306
                 +  +     +      LN     N+  + + L   ++  L        + + + 
Sbjct: 185 NLNGNDIAGIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLW-LGTFEDM-DDED 242

Query: 307 VGDASEVQLNSKVNLKALYLQWGVRDAVEPKTETQVIDMLKPHQKLE-LTITGYGGTKFP 365
           +  A    L  +++++++ LQ      +         +       L+ L +T    ++ P
Sbjct: 243 ISPAVFEGL-CEMSVESINLQKHYFFNISS-------NTFHCFSGLQELDLTATHLSELP 294

Query: 366 IWLGDSLFSKLMLLKFDNCGTCTSLPSVGQLPFLKDPVISGMGRVKIV---GSEFYGSSC 422
             L     S L  L               +   L     S    +  +   G+       
Sbjct: 295 SGLVG--LSTLKKLVLSAN----------KFENLCQISASNFPSLTHLSIKGNTKRLELG 342

Query: 423 SVSFPSLETLFFVDI------CSKLQGTLPERLLLLEKLNIFRCEQLLV---TLQCLPAL 473
           +    +LE L  +D+       S         L  L+ LN+   E L +     +  P L
Sbjct: 343 TGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQL 402

Query: 474 RELEIDGCK------GVVLSSPTDLSSLKLVHSR--DMAKEVFEQGLPKLERLEIQHVRE 525
             L++   +           +   L  L L HS     ++++F  GLP L+ L +Q    
Sbjct: 403 ELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLF-DGLPALQHLNLQG-NH 460

Query: 526 QTYLWRSETRLPQDIRSLNRLQISRCPQLISL----------LRTVKIEDCNALESLPEA 575
                  +T   Q +  L  L +S C  L S+          +  V +   N L S    
Sbjct: 461 FPKGNIQKTNSLQTLGRLEILVLSFC-DLSSIDQHAFTSLKMMNHVDLSH-NRLTSSSIE 518

Query: 576 WMHNSNSSLESLKIRSCNSLVSFPD--FALPSQLRTVTIKG----CD-ALESLPEAWMQN 628
            +  S+     L + S N +         + SQ RT+ ++     C  +     E W + 
Sbjct: 519 AL--SHLKGIYLNLAS-NHISIILPSLLPILSQQRTINLRQNPLDCTCSNIYFLE-WYKE 574

Query: 629 SSTSLESLAIDSCDSL 644
           +   LE      C++ 
Sbjct: 575 NMQKLEDTEDTLCENP 590

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 43.9 bits (104), Expect = 2e-04
 Identities = 92/584 (15%), Positives = 173/584 (29%), Gaps = 106/584 (18%)

Query: 195 NLPR-LRVFSLRGYNIFELPK-AIENLKHLRFLDLSTTKIE-ILRESINTLYNLHTLLLE 251
            LP            +  +       L +L FLDL+  +I  I  ++  + + L TL+L 
Sbjct: 30  TLPNSTECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLT 89

Query: 252 DCRRLKKL----CKDMGNLTKLHHLNNSNVGSLEEMLMLKSLVHLQGTLEISRLENVKGV 307
               L  +          L  L     + + S++  + L +   L+ +L +    ++  +
Sbjct: 90  AN-PLIFMAETALSGPKALKHL-FFIQTGISSIDF-IPLHNQKTLE-SLYLGS-NHISSI 144

Query: 308 GDASEVQLNSKVNLKALYLQWGVRDAVEPKTETQVIDMLKPHQKLELTITGYGGTKFPIW 367
                        LK L  Q      +  +     +  L+    L L + G         
Sbjct: 145 KLPKGFPTE---KLKVLDFQNNAIHYLSKED----MSSLQQATNLSLNLNGNDIAGIEPG 197

Query: 368 LGDSL-FSKLMLLKFDNCGTCTSLPSVGQLPFLKDPVISGMGRVKIVGSEFYGSSCSVSF 426
             DS  F  L      N            +  L       M    I  + F G       
Sbjct: 198 AFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEM--- 254

Query: 427 PSLETLFFVDICSKLQGTLPE---RLLLLEKLNIFRC--EQLLVTLQCLPALRELEIDGC 481
            S+E++                      L++L++      +L   L  L  L++L +   
Sbjct: 255 -SVESINLQK--HYFFNISSNTFHCFSGLQELDLTATHLSELPSGLVGLSTLKKLVLSAN 311

Query: 482 K-----GVVLSSPTDLSSLKL---VHSRDMAKEVFEQGLPKLERL-----EIQHVREQTY 528
           K      +  S+   L+ L +       ++      + L  L  L     +I+       
Sbjct: 312 KFENLCQISASNFPSLTHLSIKGNTKRLELGTGCL-ENLENLRELDLSHDDIETSDCCNL 370

Query: 529 LWRSETRLPQ------DIRSLNRLQISRCPQLISL-LRTVKIEDCNALESLPEAWMHNSN 581
             R+ + L        +  SL       CPQL  L L          L+         + 
Sbjct: 371 QLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAF------TRLKVKDAQSPFQNL 424

Query: 582 SSLESLKIRSCNSLVSFPDFA---LPS---------QLRTVTIKGCDALESLPEAWMQNS 629
             L+ L + S + L    +     LP+               I+  ++L++L        
Sbjct: 425 HLLKVLNL-SHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTL-------- 475

Query: 630 STSLESLAIDSCDSLTYIAR--IQLPPSLKRLIIFRCDNLRFNSLRKLKISGGCPDLVSS 687
              LE L +  C  L+ I +        +  +      +L  N L              S
Sbjct: 476 -GRLEILVLSFC-DLSSIDQHAFTSLKMMNHV------DLSHNRLTSS-----------S 516

Query: 688 PRFPASLTELKISDMPSLERLSSIGE----NLTSLKFLDLDNCP 727
               + L  + ++   +   +S I       L+  + ++L   P
Sbjct: 517 IEALSHLKGIYLN--LASNHISIILPSLLPILSQQRTINLRQNP 558

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 49.2 bits (118), Expect = 4e-06
 Identities = 22/137 (16%), Positives = 55/137 (40%), Gaps = 16/137 (11%)

Query: 193 LLNLPRLRVFSLRGYNIFELPKAIENLKHLRFLDLSTTKIEILRESINTLYNLHTLLLED 252
             +L ++         I  +   +E L +L  ++ S  ++  +   +  L  L  +L+ +
Sbjct: 42  QTDLDQVTTLQADRLGIKSID-GVEYLNNLTQINFSNNQLTDI-TPLKNLTKLVDILMNN 99

Query: 253 CRRLKKLCKDMGNLTKLHHLN--NSNVGSLEEMLMLKSLVHLQGTLEISRLENVKGVGDA 310
             ++  +   + NLT L  L   N+ +  ++ +  L +L  L+  L  + + ++      
Sbjct: 100 N-QIADI-TPLANLTNLTGLTLFNNQITDIDPLKNLTNLNRLE--LSSNTISDISA---- 151

Query: 311 SEVQLNSKVNLKALYLQ 327
               L+   +L+ L   
Sbjct: 152 ----LSGLTSLQQLSFG 164

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 48.8 bits (117), Expect = 5e-06
 Identities = 30/137 (21%), Positives = 53/137 (38%), Gaps = 16/137 (11%)

Query: 193 LLNLPRLRVFSLRGYNIFELPKAIENLKHLRFLDLSTTKIEILRESINTLYNLHTLLLED 252
           L NL  L    +    + ++   +  L +L  L  +  +I  +   +  L NL  L L  
Sbjct: 173 LANLTTLERLDISSNKVSDIS-VLAKLTNLESLIATNNQISDI-TPLGILTNLDELSLNG 230

Query: 253 CRRLKKLCKDMGNLTKLHHLN--NSNVGSLEEMLMLKSLVHLQGTLEISRLENVKGVGDA 310
             +LK +   + +LT L  L+  N+ + +L  +  L  L  L   L  +++ N+      
Sbjct: 231 N-QLKDI-GTLASLTNLTDLDLANNQISNLAPLSGLTKLTEL--KLGANQISNISP---- 282

Query: 311 SEVQLNSKVNLKALYLQ 327
               L     L  L L 
Sbjct: 283 ----LAGLTALTNLELN 295

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 46.5 bits (111), Expect = 2e-05
 Identities = 27/102 (26%), Positives = 47/102 (46%), Gaps = 10/102 (9%)

Query: 193 LLNLPRLRVFSLRGYNIFELPKAIENLKHLRFLDLSTTKIEILRESINTLYNLHTLLLED 252
           L  L  L+  S  G  + +L   + NL  L  LD+S+ K+  +   +  L NL +L+  +
Sbjct: 152 LSGLTSLQQLSF-GNQVTDLK-PLANLTTLERLDISSNKVSDI-SVLAKLTNLESLIATN 208

Query: 253 CRRLKKLCKDMGNLTKLHHL---NN--SNVGSLEEMLMLKSL 289
             ++  +   +G LT L  L    N   ++G+L  +  L  L
Sbjct: 209 N-QISDI-TPLGILTNLDELSLNGNQLKDIGTLASLTNLTDL 248

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 46.1 bits (110), Expect = 3e-05
 Identities = 27/136 (19%), Positives = 54/136 (39%), Gaps = 17/136 (12%)

Query: 193 LLNLPRLRVFSLRGYNIFELPKAIENLKHLRFLDLSTTKIEILRESINTLYNLHTLLLED 252
           L NL  L    L    I ++  A+  L  L+ L       ++  + +  L  L  L +  
Sbjct: 130 LKNLTNLNRLELSSNTISDIS-ALSGLTSLQQLSFGNQVTDL--KPLANLTTLERLDISS 186

Query: 253 CRRLKKLCKDMGNLTKLHHLN--NSNVGSLEEMLMLKSLVHLQGTLEISRLENVKGVGDA 310
             ++  +   +  LT L  L   N+ +  +  + +L +L  L  +L  ++L+++  +   
Sbjct: 187 N-KVSDI-SVLAKLTNLESLIATNNQISDITPLGILTNLDEL--SLNGNQLKDIGTLASL 242

Query: 311 SEVQLNSKVNLKALYL 326
           +        NL  L L
Sbjct: 243 T--------NLTDLDL 250

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 45.0 bits (107), Expect = 7e-05
 Identities = 22/102 (21%), Positives = 43/102 (42%), Gaps = 6/102 (5%)

Query: 193 LLNLPRLRVFSLRGYNIFELPKAIENLKHLRFLDLSTTKIEILRESINTLYNLHTLLLED 252
           L  L  L    L    + ++   I NLK+L +L L    I  +   +++L  L  L   +
Sbjct: 283 LAGLTALTNLELNENQLEDIS-PISNLKNLTYLTLYFNNISDI-SPVSSLTKLQRLFFYN 340

Query: 253 CRRLKKLCKDMGNLTKLHHLNNSN--VGSLEEMLMLKSLVHL 292
             ++  +   + NLT ++ L+  +  +  L  +  L  +  L
Sbjct: 341 N-KVSDV-SSLANLTNINWLSAGHNQISDLTPLANLTRITQL 380

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 43.8 bits (104), Expect = 2e-04
 Identities = 26/141 (18%), Positives = 53/141 (37%), Gaps = 16/141 (11%)

Query: 188 NVLQRLLNLPRLRVFSLRGYNIFELPKAIENLKHLRFLDLSTTKIEILRESINTLYNLHT 247
           N +     L       L   N+ +   +  +L  +  L      I+ + + +  L NL  
Sbjct: 15  NQIFTDTALAEKMKTVLGKTNVTDTV-SQTDLDQVTTLQADRLGIKSI-DGVEYLNNLTQ 72

Query: 248 LLLEDCRRLKKLCKDMGNLTKLHHLN--NSNVGSLEEMLMLKSLVHLQGTLEISRLENVK 305
           +   +  +L  +   + NLTKL  +   N+ +  +  +  L +L  L   L  +++ ++ 
Sbjct: 73  INFSNN-QLTDI-TPLKNLTKLVDILMNNNQIADITPLANLTNLTGLT--LFNNQITDID 128

Query: 306 GVGDASEVQLNSKVNLKALYL 326
                    L +  NL  L L
Sbjct: 129 P--------LKNLTNLNRLEL 141

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 41.9 bits (99), Expect = 6e-04
 Identities = 24/102 (23%), Positives = 42/102 (41%), Gaps = 6/102 (5%)

Query: 193 LLNLPRLRVFSLRGYNIFELPKAIENLKHLRFLDLSTTKIEILRESINTLYNLHTLLLED 252
           L  L +L    L    I  +   +  L  L  L+L+  ++E +   I+ L NL  L L  
Sbjct: 261 LSGLTKLTELKLGANQISNIS-PLAGLTALTNLELNENQLEDI-SPISNLKNLTYLTLYF 318

Query: 253 CRRLKKLCKDMGNLTKLH--HLNNSNVGSLEEMLMLKSLVHL 292
              +  +   + +LTKL      N+ V  +  +  L ++  L
Sbjct: 319 N-NISDI-SPVSSLTKLQRLFFYNNKVSDVSSLANLTNINWL 358

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 48.4 bits (116), Expect = 4e-06
 Identities = 14/79 (17%), Positives = 33/79 (41%), Gaps = 2/79 (2%)

Query: 195 NLPRLRVFSLRGYNIFELPKAIENLKHLRFLDLSTTKIEILRESINTLYNLHTLLLEDCR 254
           +   L   +L+   I+++   +     L+ LDLS+ K+  +     +   +  + L +  
Sbjct: 167 SSDTLEHLNLQYNFIYDVKGQV-VFAKLKTLDLSSNKLAFMGPEFQSAAGVTWISLRNN- 224

Query: 255 RLKKLCKDMGNLTKLHHLN 273
           +L  + K +     L H +
Sbjct: 225 KLVLIEKALRFSQNLEHFD 243

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 48.1 bits (115), Expect = 5e-06
 Identities = 14/111 (12%), Positives = 38/111 (34%), Gaps = 5/111 (4%)

Query: 190 LQRLLNLPRLRVFSLRGYNIFELPKAIENLKHLRFLDLSTTKIEILRESINTLYNLHTLL 249
           ++  +   +L+   L    +  +    ++   + ++ L   K+ ++ +++    NL    
Sbjct: 184 VKGQVVFAKLKTLDLSSNKLAFMGPEFQSAAGVTWISLRNNKLVLIEKALRFSQNLEHFD 243

Query: 250 LED----CRRLKKLCKDMGNLTKLHHLNNSNV-GSLEEMLMLKSLVHLQGT 295
           L      C  L+        +  +       + G  EE   + +L H    
Sbjct: 244 LRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQNEEECTVPTLGHYGAY 294

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 46.1 bits (110), Expect = 2e-05
 Identities = 26/137 (18%), Positives = 56/137 (40%), Gaps = 18/137 (13%)

Query: 194 LNLPRLRVFSLRGYNIFELPKAI-ENLKHLRFLDLSTTKIE-ILRESINTLYNLHTLLLE 251
            N  R ++  +   ++ +   ++ ++  +++ LDLS   +  I    +     L  L L 
Sbjct: 7   QNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLS 66

Query: 252 DCRRLKKLCKDMGNLTKLHHLN-NSNVGSLEEMLMLKSLVHLQGTLEISRLENVKGVGDA 310
               L +   D+ +L+ L  L+ N+N   ++E+L+  S+  L      + +         
Sbjct: 67  SN-VLYET-LDLESLSTLRTLDLNNN--YVQELLVGPSIETLH--AANNNI--------- 111

Query: 311 SEVQLNSKVNLKALYLQ 327
           S V  +     K +YL 
Sbjct: 112 SRVSCSRGQGKKNIYLA 128

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 45.4 bits (108), Expect = 4e-05
 Identities = 19/110 (17%), Positives = 37/110 (33%), Gaps = 8/110 (7%)

Query: 188 NVLQRLLNLPRLRVFSLRGYNIFELPKAIENLKHLRFLDLSTTKIEIL-RESINTLYNLH 246
           N +Q LL  P +        NI  +       +  + + L+  KI +L          + 
Sbjct: 90  NYVQELLVGPSIETLHAANNNISRVS--CSRGQGKKNIYLANNKITMLRDLDEGCRSRVQ 147

Query: 247 TLLLEDCRRLKKLCKD--MGNLTKLHHLNNSN--VGSLEEMLMLKSLVHL 292
            L L+    +  +       +   L HLN     +  ++  ++   L  L
Sbjct: 148 YLDLKLNE-IDTVNFAELAASSDTLEHLNLQYNFIYDVKGQVVFAKLKTL 196

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 48.1 bits (115), Expect = 5e-06
 Identities = 26/137 (18%), Positives = 53/137 (38%), Gaps = 16/137 (11%)

Query: 193 LLNLPRLRVFSLRGYNIFELPKAIENLKHLRFLDLSTTKIEILRESINTLYNLHTLLLED 252
             +L  +   S  G  +  +   ++ L +L  L+L   +I  L   +  L  +  L L  
Sbjct: 37  QADLDGITTLSAFGTGVTTIE-GVQYLNNLIGLELKDNQITDL-APLKNLTKITELELSG 94

Query: 253 CRRLKKLCKDMGNLTKLHHLNNSNVGSLEEMLMLKSLVHLQGTLEIS--RLENVKGVGDA 310
              LK +   +  L  +  L+ ++   + ++  L  L +LQ  L +   ++ N+      
Sbjct: 95  N-PLKNV-SAIAGLQSIKTLDLTS-TQITDVTPLAGLSNLQ-VLYLDLNQITNISP---- 146

Query: 311 SEVQLNSKVNLKALYLQ 327
               L    NL+ L + 
Sbjct: 147 ----LAGLTNLQYLSIG 159

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 47.0 bits (112), Expect = 1e-05
 Identities = 19/105 (18%), Positives = 43/105 (40%), Gaps = 6/105 (5%)

Query: 190 LQRLLNLPRLRVFSLRGYNIFELPKAIENLKHLRFLDLSTTKIEILRESINTLYNLHTLL 249
           +  L  L  L+V  L    I  +   +  L +L++L +   ++  L   +  L  L TL 
Sbjct: 122 VTPLAGLSNLQVLYLDLNQITNIS-PLAGLTNLQYLSIGNAQVSDL-TPLANLSKLTTLK 179

Query: 250 LEDCRRLKKLCKDMGNLTKLHHLNNSN--VGSLEEMLMLKSLVHL 292
            +D  ++  +   + +L  L  ++  N  +  +  +    +L  +
Sbjct: 180 ADDN-KISDI-SPLASLPNLIEVHLKNNQISDVSPLANTSNLFIV 222

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 48.8 bits (116), Expect = 5e-06
 Identities = 50/187 (26%), Positives = 77/187 (41%), Gaps = 40/187 (21%)

Query: 567 NALESLPEAWMHNSNSSLESLKIRSCNSLVSFPDFALPSQLRTVTIKGCDALESLPEAWM 626
            A+  L E  ++        L++ +  +L S PD  LP Q+  + I    AL SLPE   
Sbjct: 48  EAVSLLKECLINQ----FSELQL-NRLNLSSLPD-NLPPQITVLEITQN-ALISLPE--- 97

Query: 627 QNSSTSLESLAIDSCDSLTYIARIQLPPSLKRLIIFRCDNLRFNSLRKLKISGGCPDLVS 686
                SLE L     + L+ +   +LP SLK L      ++  N L  L           
Sbjct: 98  --LPASLEYLDA-CDNRLSTLP--ELPASLKHL------DVDNNQLTML----------- 135

Query: 687 SPRFPASLTELKISDMPSLERLSSIGENLTSLKFLDLDNCPKLKYFSKQGLPKSLLRLII 746
            P  PA L  +   +     +L+ + E  TSL+ L + N  +L +  +  LP+SL  L +
Sbjct: 136 -PELPALLEYINADN----NQLTMLPELPTSLEVLSVRNN-QLTFLPE--LPESLEALDV 187

Query: 747 DECPLIE 753
               L  
Sbjct: 188 STNLLES 194

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 45.0 bits (106), Expect = 9e-05
 Identities = 48/194 (24%), Positives = 77/194 (39%), Gaps = 32/194 (16%)

Query: 536 LPQDIRSLN--RLQISRCPQLISLLRTVKIEDCNALESLPEAWMHNSNSSLESLKIRSCN 593
           LP  I  L   +  +   P+L + L  +   D N L +LPE       +SL+ L +   N
Sbjct: 78  LPPQITVLEITQNALISLPELPASLEYLDACD-NRLSTLPELP-----ASLKHLDV-DNN 130

Query: 594 SLVSFPDFALPSQLRTVTIKGCDALESLPEAWMQNSSTSLESLAIDSCDSLTYIARIQLP 653
            L   P+  LP+ L  +       L  LPE       TSLE L++ +   LT++   +LP
Sbjct: 131 QLTMLPE--LPALLEYINADNN-QLTMLPELP-----TSLEVLSVRNN-QLTFLP--ELP 179

Query: 654 PSLKRLIIFRCDNLRFNSLRKLKISGGCPDLVSSPRFPASLTELKISDMPSLERLSSIGE 713
            SL+ L      ++  N L  L                    E +I+ +P      +I  
Sbjct: 180 ESLEAL------DVSTNLLESLPAVPVRNHHSEETEIFFRCRENRITHIPE-----NIL- 227

Query: 714 NLTSLKFLDLDNCP 727
           +L     + L++ P
Sbjct: 228 SLDPTCTIILEDNP 241

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 44.6 bits (105), Expect = 1e-04
 Identities = 23/95 (24%), Positives = 41/95 (43%), Gaps = 7/95 (7%)

Query: 186 RQNVLQRLLNLP-RLRVFSLRGYNIFELPKAIENLKHLRFLDLSTTKIEILRESINTLYN 244
             N L  L  LP  L V S+R   +  LP+  E+L+    LD+ST  +E L       ++
Sbjct: 148 DNNQLTMLPELPTSLEVLSVRNNQLTFLPELPESLEA---LDVSTNLLESLPAVPVRNHH 204

Query: 245 LHTLLLE-DCR--RLKKLCKDMGNLTKLHHLNNSN 276
                +   CR  R+  + +++ +L     +   +
Sbjct: 205 SEETEIFFRCRENRITHIPENILSLDPTCTIILED 239

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 48.8 bits (116), Expect = 5e-06
 Identities = 14/79 (17%), Positives = 27/79 (34%), Gaps = 3/79 (3%)

Query: 195 NLPRLRVFSLRGYNIFELPKAIENLKHLRFLDLSTTKIEILRESINTLYNLHTLLLEDCR 254
            + RL    +    +  L    + +  L+ LDLS   +  +  +      L  L L+   
Sbjct: 276 KMQRLERLYISNNRLVALNLYGQPIPTLKVLDLSHNHLLHVERNQPQFDRLENLYLDHN- 334

Query: 255 RLKKLCKDMGNLTKLHHLN 273
            +  L   +     L +L 
Sbjct: 335 SIVTL--KLSTHHTLKNLT 351

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 48.8 bits (116), Expect = 6e-06
 Identities = 16/85 (18%), Positives = 31/85 (36%), Gaps = 2/85 (2%)

Query: 193 LLNLPRLRVFSLRGYNIFELPK-AIENLKHLRFLDLSTTKIEILRESINTLYNLHTLLLE 251
           LLN P L    L    + ++       ++ L  L +S  ++  L      +  L  L L 
Sbjct: 250 LLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVALNLYGQPIPTLKVLDLS 309

Query: 252 DCRRLKKLCKDMGNLTKLHHLNNSN 276
               L  + ++     +L +L   +
Sbjct: 310 HN-HLLHVERNQPQFDRLENLYLDH 333

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 48.8 bits (117), Expect = 5e-06
 Identities = 90/610 (14%), Positives = 168/610 (27%), Gaps = 117/610 (19%)

Query: 193 LLNLPRLRVFSLRGYNIFELP-KAIENLKHLRFLDLSTTKIE-ILRESINTLYNLHTLLL 250
              LP L+V +L+   + +L  K      +L  L L +  I+ I         NL TL L
Sbjct: 69  CQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDL 128

Query: 251 EDCRRLKKLCKDM-GNLTKLHHL---NNSNVGSLEEMLMLKSLVHLQGTLEISRLENVKG 306
                L          L  L  L   NN       E L + +   L+  LE+S    +K 
Sbjct: 129 SHNG-LSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLK-KLELSSN-QIKE 185

Query: 307 VGDASEVQLNSKVNLKALYLQWGVRDAVEPKTETQVIDMLKPHQKLELTITGYGGTKF-- 364
                   +     L  L+L          +     +      + L L       ++   
Sbjct: 186 FSPGCFHAIG---RLFGLFLNNVQLGPSLTEKLCLELANTSI-RNLSL-----SNSQLST 236

Query: 365 --PIWLGDSLFSKLMLLKFDNCG-TCTSLPSVGQLPFLKDPVISGMGRVKIVGSEFYGSS 421
                     ++ L +L             S   LP L+   +       +     +G  
Sbjct: 237 TSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLF 296

Query: 422 CSVSFPSLETLFFVDICSKLQGTLPERLLLLEKLNIFRCEQLLVTLQCLPALRELEIDGC 481
                 ++  L        L+ +  ++ + L  L          + Q L  L  L ++  
Sbjct: 297 ------NVRYL-------NLKRSFTKQSISLASLPKIDDF----SFQWLKCLEHLNMEDN 339

Query: 482 K--GVVLSSPTDLSSLKLVH-------SRDMAKEVFEQ-GLPKLERL-----EIQHVREQ 526
              G+  +  T L +LK +         R +  E F       L  L     +I  +   
Sbjct: 340 DIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESD 399

Query: 527 T--------YLWRSETRLPQDIRSLNRLQISRCPQLISL-LRTVKIEDCNALESLPEAWM 577
                     L      +    + L   +      +  + L        N    L     
Sbjct: 400 AFSWLGHLEVLDLGLNEI---GQELTGQEWRGLENIFEIYL------SYNKYLQLTRNSF 450

Query: 578 HNSNSSLESLKIRSCNSLVSFPDFALP----SQLRTVTIKGCDALESLPEAWMQNSSTSL 633
                SL+ L +R   +L +      P      L  + +   + + ++ +  ++     L
Sbjct: 451 AL-VPSLQRLMLRR-VALKNVDSSPSPFQPLRNLTILDLSNNN-IANINDDMLEGL-EKL 506

Query: 634 ESLAIDSCDSLTYIARIQLPPSLKRLIIFRCDNLRFNSLRKLKISGGCPDLVSSPRFPAS 693
           E L +    +L  + +   P      +     +L   +L          ++         
Sbjct: 507 EILDLQHN-NLARLWKHANPGGPIYFLK-GLSHLHILNLESNGFDEIPVEVFKDLF---E 561

Query: 694 LTELKISD-------------MPSLERL------------SSIGENLTSLKFLDLDN--- 725
           L  + +                 SL+ L               G    +L  LD+     
Sbjct: 562 LKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKVFGPAFRNLTELDMRFNPF 621

Query: 726 ---CPKLKYF 732
              C  + +F
Sbjct: 622 DCTCESIAWF 631

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 48.3 bits (115), Expect = 7e-06
 Identities = 12/118 (10%), Positives = 35/118 (29%), Gaps = 4/118 (3%)

Query: 190 LQRLLNLPRLRVFSLRGYNIFELPKAIENLKHLRFLDLSTTKIEILRESINTLYNLHTLL 249
           ++  +   +L+   L    +  +    ++   + ++ L   K+ ++ +++    NL    
Sbjct: 184 VKGQVVFAKLKTLDLSSNKLAFMGPEFQSAAGVTWISLRNNKLVLIEKALRFSQNLEHFD 243

Query: 250 LED----CRRLKKLCKDMGNLTKLHHLNNSNVGSLEEMLMLKSLVHLQGTLEISRLEN 303
           L      C  L+        +  +       +    E       +   G      L  
Sbjct: 244 LRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQNEEECTVPTLGHYGAYCCEDLPA 301

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 44.5 bits (105), Expect = 1e-04
 Identities = 21/102 (20%), Positives = 47/102 (46%), Gaps = 7/102 (6%)

Query: 194 LNLPRLRVFSLRGYNIFELPKAI-ENLKHLRFLDLSTTKIE-ILRESINTLYNLHTLLLE 251
            N  R ++  +   ++ +   ++ ++  +++ LDLS   +  I    +     L  L L 
Sbjct: 7   QNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLS 66

Query: 252 DCRRLKKLCKDMGNLTKLHHLN-NSNVGSLEEMLMLKSLVHL 292
               L +   D+ +L+ L  L+ N+N   ++E+L+  S+  L
Sbjct: 67  SN-VLYET-LDLESLSTLRTLDLNNN--YVQELLVGPSIETL 104

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 42.9 bits (101), Expect = 3e-04
 Identities = 19/110 (17%), Positives = 37/110 (33%), Gaps = 8/110 (7%)

Query: 188 NVLQRLLNLPRLRVFSLRGYNIFELPKAIENLKHLRFLDLSTTKIEIL-RESINTLYNLH 246
           N +Q LL  P +        NI  +       +  + + L+  KI +L          + 
Sbjct: 90  NYVQELLVGPSIETLHAANNNISRVS--CSRGQGKKNIYLANNKITMLRDLDEGCRSRVQ 147

Query: 247 TLLLEDCRRLKKLCKDM--GNLTKLHHLNNSN--VGSLEEMLMLKSLVHL 292
            L L+    +  +       +   L HLN     +  ++  ++   L  L
Sbjct: 148 YLDLKLN-EIDTVNFAELAASSDTLEHLNLQYNFIYDVKGQVVFAKLKTL 196

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 47.5 bits (113), Expect = 1e-05
 Identities = 36/252 (14%), Positives = 89/252 (35%), Gaps = 40/252 (15%)

Query: 489 PTDLSSLKLVHS--RDMAKEVFEQGLPKLERLEIQHVREQTYLWRSETRLPQDIRSLNRL 546
           P +   L+ V +  R + K  F  G   LE++EI        +   E  +  ++  L+ +
Sbjct: 29  PRNAIELRFVLTKLRVIQKGAF-SGFGDLEKIEISQNDVLEVI---EADVFSNLPKLHEI 84

Query: 547 QISRCPQLISL----------LRTVKIEDCNALESLPEAWMHNSNSSLESLKIRSCNSLV 596
           +I +   L+ +          L+ + I +   ++ LP+    +S      L I+   ++ 
Sbjct: 85  RIEKANNLLYINPEAFQNLPNLQYLLISN-TGIKHLPDVHKIHS-LQKVLLDIQDNINIH 142

Query: 597 SFPDFA---LPSQLRTVTIKGCDALESLPEAWMQNSSTSLESLAIDSCDSLTYIARIQLP 653
           +    +   L  +   + +     ++ +  +    + T L+ L +   ++L  +      
Sbjct: 143 TIERNSFVGLSFESVILWLNKNG-IQEIHNS--AFNGTQLDELNLSDNNNLEELP----N 195

Query: 654 PSLKRLIIFRCDNLRFNSLRKLKISGGCPDLVSSPRFPASLTELKISDMPSLERLSSIGE 713
                       ++    +  L                 +L +L+     +L++L ++ E
Sbjct: 196 DVFHGASGPVILDISRTRIHSL-----------PSYGLENLKKLRARSTYNLKKLPTL-E 243

Query: 714 NLTSLKFLDLDN 725
            L +L    L  
Sbjct: 244 KLVALMEASLTY 255

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 46.2 bits (110), Expect = 3e-05
 Identities = 58/330 (17%), Positives = 99/330 (30%), Gaps = 59/330 (17%)

Query: 423 SVSFPSLETLFFVDICSKLQGTLP--ERLLLLEKLNIFRCEQLLVTLQCLPALRELEIDG 480
           ++S   L TL  +D  +     +   E+L  L KL         + L     L  L  D 
Sbjct: 35  TISEEQLATLTSLDCHNSSITDMTGIEKLTGLTKLICTSNNITTLDLSQNTNLTYLACDS 94

Query: 481 CK--GVVLSSPTDLSSLKLVHSRDMAKEVFEQGLPKLERLEIQHVREQTYLWRSETRLPQ 538
            K   + ++  T L+ L    ++    ++     P L  L                    
Sbjct: 95  NKLTNLDVTPLTKLTYLNCDTNK--LTKLDVSQNPLLTYLNCARNT-------------- 138

Query: 539 DIRSLNRLQISRCPQLISL-------LRTVKIEDCNALESLPEAWMHNSNSSLESLKIRS 591
               L  + +S   QL  L       +  + +     L +L       S + +  L +  
Sbjct: 139 ----LTEIDVSHNTQLTELDCHLNKKITKLDVTPQTQLTTL-----DCSFNKITELDVSQ 189

Query: 592 CNSLVSFPDFALPS-QLRTVTIKGCDALESLPEAWMQNSSTSLESLAIDSCDSLTYIA-- 648
              L         +  +  + +     L  L       SS  L  + +     LTY    
Sbjct: 190 NKLLNRL---NCDTNNITKLDLNQNIQLTFL-----DCSSNKLTEIDVTPLTQLTYFDCS 241

Query: 649 --RIQ-LPPS-LKRLIIFRCDNLRFNSLRKLKISGGCPDLVS-SPRFPASLTELKISDMP 703
              +  L  S L +L    C       L ++ ++     L+         + EL ++   
Sbjct: 242 VNPLTELDVSTLSKLTTLHCIQ---TDLLEIDLTH-NTQLIYFQAEGCRKIKELDVTHNT 297

Query: 704 SLERLSSIGENLTSLKFLDLDNCPKLKYFS 733
            L  L      +T L   DL   PKL Y  
Sbjct: 298 QLYLLDCQAAGITEL---DLSQNPKLVYLY 324

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 46.2 bits (110), Expect = 3e-05
 Identities = 47/295 (15%), Positives = 89/295 (30%), Gaps = 63/295 (21%)

Query: 465 VTLQCLPALRELEIDGCKGVVLSSPTDLSSLKLVHSRDMA-KEVFEQGLPKLERLEIQHV 523
           ++ + L  L  L+        ++    L+ L  +         +       L  L     
Sbjct: 36  ISEEQLATLTSLDCHNSSITDMTGIEKLTGLTKLICTSNNITTLDLSQNTNLTYLACDSN 95

Query: 524 REQTYLWRSETRLPQDIRSLNRLQISRCPQLISL------LRTVKIEDCNALESLPEAWM 577
           +                  L  L ++   +L  L      L  + +     L  L     
Sbjct: 96  K------------------LTNLDVTPLTKLTYLNCDTNKLTKLDVSQNPLLTYL----- 132

Query: 578 HNSNSSLESLKIRSCNSLVSFPDFALPSQLRTVTIKGCDALESLPEAWMQNSSTSLESLA 637
           + + ++L  + +     L    D  L  ++  + +     L +L       S   +  L 
Sbjct: 133 NCARNTLTEIDVSHNTQLTEL-DCHLNKKITKLDVTPQTQLTTL-----DCSFNKITELD 186

Query: 638 IDSCDSLTY-------IARIQL--PPSLKRLIIFRCDNLRFNSLRKLKISGGCPDL---- 684
           +     L         I ++ L     L  L      +   N L ++ ++     L    
Sbjct: 187 VSQNKLLNRLNCDTNNITKLDLNQNIQLTFL------DCSSNKLTEIDVTP-LTQLTYFD 239

Query: 685 VSSPRFPASLTELKISDMPSLERLSSIGENLTSLKFLDLDNCPKLKYFSKQGLPK 739
            S       LTEL +S +  L  L  I  +L     +DL +  +L YF  +G  K
Sbjct: 240 CSV----NPLTELDVSTLSKLTTLHCIQTDLLE---IDLTHNTQLIYFQAEGCRK 287

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 45.8 bits (109), Expect = 4e-05
 Identities = 56/329 (17%), Positives = 95/329 (28%), Gaps = 74/329 (22%)

Query: 449 LLLLEKLNIFRCEQLLVTLQCLPALRELEIDGCK--GVVLSSPTDLSSLKLVHSRDMAKE 506
           L  L  LN    +   + +   P L  L         + +S  T L+ L    ++ + K 
Sbjct: 105 LTKLTYLNCDTNKLTKLDVSQNPLLTYLNCARNTLTEIDVSHNTQLTELDCHLNKKITKL 164

Query: 507 VFEQGLPKLERLEIQHVREQTYLWRSETRLPQDIRSLNRLQISRCPQLISLLRTVKIEDC 566
                  +L  L+    +                  +  L +S+   L  L       +C
Sbjct: 165 DVT-PQTQLTTLDCSFNK------------------ITELDVSQNKLLNRL-------NC 198

Query: 567 --NALESLPEAWMHNSNSSLESLKIRSCNSLVSFPDFALPS---------QLRTVTIKGC 615
             N +  L      N N  L  L   S N L       L            L  + +   
Sbjct: 199 DTNNITKLDL----NQNIQLTFLDC-SSNKLTEIDVTPLTQLTYFDCSVNPLTELDVSTL 253

Query: 616 DALESLPEAWMQNSSTSLESLAIDSCDSLTYIARIQLPPSLKRLIIFRCDNLR-----FN 670
             L +L         T L  + +     L Y         +K L +     L        
Sbjct: 254 SKLTTL-----HCIQTDLLEIDLTHNTQLIYFQAEGCR-KIKELDVTHNTQLYLLDCQAA 307

Query: 671 SLRKLKISGGCPDL----VSSPRFPASLTELKISDMPSLERLS---------SIGENLTS 717
            + +L +S   P L    +++      LTEL +S    L+ LS         S    + +
Sbjct: 308 GITELDLSQ-NPKLVYLYLNN----TELTELDVSHNTKLKSLSCVNAHIQDFSSVGKIPA 362

Query: 718 LKFLDLDNCPKLKYFSKQGLPKSLLRLII 746
           L         +     K+ L  + L + +
Sbjct: 363 LNNNFEAE-GQTITMPKETLTNNSLTIAV 390

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 41.6 bits (98), Expect = 8e-04
 Identities = 22/82 (26%), Positives = 33/82 (40%), Gaps = 6/82 (7%)

Query: 195 NLPRLRVFSLRGYNIFELPKAIENLKHLRFLDLSTTKIEILRESINTLYNLHTLLLEDCR 254
            L  L        +I ++   IE L  L  L  ++  I  L   ++   NL  L  +   
Sbjct: 40  QLATLTSLDCHNSSITDMT-GIEKLTGLTKLICTSNNITTL--DLSQNTNLTYLACDSN- 95

Query: 255 RLKKLCKDMGNLTKLHHLNNSN 276
           +L  L  D+  LTKL +LN   
Sbjct: 96  KLTNL--DVTPLTKLTYLNCDT 115

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 45.4 bits (108), Expect = 3e-05
 Identities = 28/138 (20%), Positives = 56/138 (40%), Gaps = 18/138 (13%)

Query: 193 LLNLPRLRVFSLRGYNIFELPKAIENLKHLRFLDLSTTKIEILRESINTLYNLHTLLLED 252
              L  +        +I  + + I+ L ++  L L+  K+  + + +  L NL  L L++
Sbjct: 42  QNELNSIDQIIANNSDIKSV-QGIQYLPNVTKLFLNGNKLTDI-KPLANLKNLGWLFLDE 99

Query: 253 CRRLKKLC--KDMGNLTKLHHLNNSNVGSLEEMLMLKSLVHLQ-GTLEISRLENVKGVGD 309
             ++K L   KD+  L  L  L ++ +  +  ++ L  L  L  G  +I+ +        
Sbjct: 100 N-KVKDLSSLKDLKKLKSL-SLEHNGISDINGLVHLPQLESLYLGNNKITDITV------ 151

Query: 310 ASEVQLNSKVNLKALYLQ 327
                L+    L  L L+
Sbjct: 152 -----LSRLTKLDTLSLE 164

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 42.3 bits (100), Expect = 3e-04
 Identities = 22/102 (21%), Positives = 37/102 (36%), Gaps = 5/102 (4%)

Query: 193 LLNLPRLRVFSLRGYNIFELPKAIENLKHLRFLDLSTTKIEILRESINTLYNLHTLLLED 252
           L++LP+L    L    I ++   +  L  L  L L   +I  +   +  L  L  L L  
Sbjct: 130 LVHLPQLESLYLGNNKITDI-TVLSRLTKLDTLSLEDNQISDI-VPLAGLTKLQNLYLSK 187

Query: 253 CRRLKKLCKDMGNLTKLHHLN-NSNVGSLEEMLMLKSLVHLQ 293
              +  L + +  L  L  L   S     + +    +LV   
Sbjct: 188 N-HISDL-RALAGLKNLDVLELFSQECLNKPINHQSNLVVPN 227

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 45.4 bits (108), Expect = 4e-05
 Identities = 26/143 (18%), Positives = 49/143 (34%), Gaps = 17/143 (11%)

Query: 193 LLNLPRLRVFSLRGYNIFELPKAIENLKHLRFLDLSTTKIEILRES--INTLYNLHTLLL 250
                 L+   L    +  +      L+ L  LD   + ++ + E     +L NL  L +
Sbjct: 74  DFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDI 133

Query: 251 EDCRRLKKL----CKDMGNLTKLHHLNNSNVGSLEEMLMLKSLVHLQGTLEIS--RLENV 304
                 +         + +L  L    NS   +    +    L +L   L++S  +LE +
Sbjct: 134 SHT-HTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDI-FTELRNLT-FLDLSQCQLEQL 190

Query: 305 KGVGDASEVQLNSKVNLKALYLQ 327
                 S    NS  +L+ L + 
Sbjct: 191 ------SPTAFNSLSSLQVLNMS 207

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 45.5 bits (108), Expect = 4e-05
 Identities = 48/251 (19%), Positives = 85/251 (33%), Gaps = 53/251 (21%)

Query: 510 QGLPKLERLEIQHVREQTYLWRSETRLPQDIRSLNRLQISRCPQLISLLRTVKIEDCNAL 569
           + L  LE L++        +   E      + +LN L++                  N L
Sbjct: 85  KHLRHLEILQLSRNH----IRTIEIGAFNGLANLNTLELFD----------------NRL 124

Query: 570 ESLPEAWMHNSNSSLESLKIRSCNSLVSFPDFALP--SQLRTVTIKGCDALESLPEAWMQ 627
            ++P        S L+ L +R+ N + S P +A      LR + +     L  + E   +
Sbjct: 125 TTIPNGAFVY-LSKLKELWLRN-NPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFE 182

Query: 628 NSSTSLESLAIDSCDSLTYIARIQLPPSLKRLIIFRCDNLRFNSLRKLKISGGCPDLVSS 687
              ++L  L +  C +L  I  +     L  L      +L  N L  ++  G    L+  
Sbjct: 183 GL-SNLRYLNLAMC-NLREIPNLTPLIKLDEL------DLSGNHLSAIR-PGSFQGLMH- 232

Query: 688 PRFPASLTELKISDMPSLERLSSIGE----NLTSLKFLDLDNCPKLKYFSK---QGLPKS 740
                 L +L +       ++  I      NL SL  ++L +   L          L   
Sbjct: 233 ------LQKLWMIQS----QIQVIERNAFDNLQSLVEINLAHN-NLTLLPHDLFTPLH-H 280

Query: 741 LLRLIIDECPL 751
           L R+ +   P 
Sbjct: 281 LERIHLHHNPW 291

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 44.2 bits (105), Expect = 7e-05
 Identities = 33/140 (23%), Positives = 56/140 (40%), Gaps = 19/140 (13%)

Query: 190 LQRLLNLPRLRVFSLRGYNIFELPKAIENLKHLRFLDLSTTKIEILRESINTLYNLHTLL 249
           L     L  ++ F+    NI  L   ++   +L+ L LS  +I  L   +  L  L  L 
Sbjct: 34  LVSQKELSGVQNFNGDNSNIQSL-AGMQFFTNLKELHLSHNQISDL-SPLKDLTKLEELS 91

Query: 250 LEDCRRLKKLCK-DMGNLTKLHHLNNSNVGSLEEMLMLKSLVHLQGTLEIS--RLENVKG 306
           +    RLK L       L++L  L+N+ +   +    L  L +L+  L I   +L+++  
Sbjct: 92  VNRN-RLKNLNGIPSACLSRL-FLDNNELRDTDS---LIHLKNLE-ILSIRNNKLKSIVM 145

Query: 307 VGDASEVQLNSKVNLKALYL 326
                   L     L+ L L
Sbjct: 146 --------LGFLSKLEVLDL 157

>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A* Length = 1249

 Score = 45.2 bits (107), Expect = 7e-05
 Identities = 44/237 (18%), Positives = 82/237 (34%), Gaps = 38/237 (16%)

Query: 20  QSLKEVGQKIAMKCKGLPLAAKTLGGLLRGKDDPKD------WENVLKTEVWDLADDKCD 73
           + L      I  +CKG PL    +G LLR   +              K      + D   
Sbjct: 304 EDLPAEAHSIIKECKGSPLVVSLIGALLRDFPNRWAYYLRQLQNKQFKRIRKSSSYDYEA 363

Query: 74  IIPALRVSYHFLPPQLKQCFAYCSLFPKDHEFQKEQIILLWAAEGFLHQENSKRKMEDLG 133
           +  A+ +S   L   +K  +   S+  KD +   + + +LW  E            E++ 
Sbjct: 364 LDEAMSISVEMLREDIKDYYTDLSILQKDVKVPTKVLCVLWDLET-----------EEV- 411

Query: 134 REFVEELHSRSL-FHQSTYDASRFVMHDLINDLTRWAAGETCFRMEDTPEGERRQNVLQR 192
            + ++E  ++SL F      +  + +HDL  D                   E+ ++ LQ 
Sbjct: 412 EDILQEFVNKSLLFCNRNGKSFCYYLHDLQVDFLT----------------EKNRSQLQD 455

Query: 193 LLNLPRLRVFSLRGYNIFELPKAIENLKH-LRFLDLSTTKIEILRESINTLYNLHTL 248
           L    ++     R Y    L    E+  +   FL        + +E    +++L  +
Sbjct: 456 LHR--KMVTQFQRYYQPHTLSPDQEDCMYWYNFLAYHMASANMHKELCALMFSLDWI 510

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 43.1 bits (102), Expect = 1e-04
 Identities = 27/122 (22%), Positives = 53/122 (43%), Gaps = 11/122 (9%)

Query: 208 NIFELPKAIENLKHLRFLDLSTTKIEILRESINTLYNLHTLLLEDCR--RLKKLCKDMGN 265
            I ++   +  LK  + L LST  IE +  S++ + NL  L L      +++ L      
Sbjct: 36  PIEKMDATLSTLKACKHLALSTNNIEKI-SSLSGMENLRILSLGRNLIKKIENLDAVADT 94

Query: 266 LTKLHHLNNSNVGSLEEMLMLKSLVHLQGTLEISRLENVKGVGDASEVQLNSKVNLKALY 325
           L +L  ++ + + SL  +  L +L  L   +  +++ N   +      +L +   L+ L 
Sbjct: 95  LEEL-WISYNQIASLSGIEKLVNLRVLY--MSNNKITNWGEID-----KLAALDKLEDLL 146

Query: 326 LQ 327
           L 
Sbjct: 147 LA 148

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 42.7 bits (101), Expect = 1e-04
 Identities = 22/103 (21%), Positives = 42/103 (40%), Gaps = 5/103 (4%)

Query: 193 LLNLPRLRVFSLRGYNIFELPKAIENLKHLRFLDLSTTKIEILRESINTLYNLHTLLLED 252
           L  L   +  +L   NI ++  ++  +++LR L L    I+ +         L  L +  
Sbjct: 44  LSTLKACKHLALSTNNIEKI-SSLSGMENLRILSLGRNLIKKIENLDAVADTLEELWISY 102

Query: 253 CRRLKKLCKDMGNLTKLHHLNNSN--VGSLEEMLMLKSLVHLQ 293
             ++  L   +  L  L  L  SN  + +  E+  L +L  L+
Sbjct: 103 N-QIASL-SGIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLE 143

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 43.9 bits (104), Expect = 1e-04
 Identities = 28/107 (26%), Positives = 47/107 (43%), Gaps = 8/107 (7%)

Query: 193 LLNLPRLRVFSLRGYNIFELP-KAIENLKHLRFLDLSTTKIEILRESI-NTLYNLHTLLL 250
            L    L   S+   N+  +P  A+ +L +LRFL+LS   I  +  S+ + L  L  + L
Sbjct: 220 CLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQL 279

Query: 251 EDCRRLKKLCKDM-GNLTKLHHLN--NSNVGSLEEMLM--LKSLVHL 292
               +L  +       L  L  LN   + + +LEE +   + +L  L
Sbjct: 280 VGG-QLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLETL 325

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 43.2 bits (102), Expect = 2e-04
 Identities = 55/327 (16%), Positives = 120/327 (36%), Gaps = 84/327 (25%)

Query: 466 TLQCLPALRELEIDGCKGVVLSSPT--DLSSLKLVH-----SRDMAKEVFEQGLPKLERL 518
                P L ELE++      +      +L +L+ +       + +   VF  GL  L +L
Sbjct: 51  EFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVF-TGLSNLTKL 109

Query: 519 -----EIQHVREQTYLWRSETRLPQDIRSLNRLQISRCPQLISL----------LRTVKI 563
                +I  + +  +         QD+ +L  L++     L+ +          L  + +
Sbjct: 110 DISENKIVILLDYMF---------QDLYNLKSLEVGDN-DLVYISHRAFSGLNSLEQLTL 159

Query: 564 EDCNALESLPEAWMHNSNSSLESLKIRSCNSLVSFPDFALP--SQLRTVTIKGCDALESL 621
           E    L S+P   + +    L  L++R   ++ +  D++     +L+ + I     L+++
Sbjct: 160 EK-CNLTSIPTEALSH-LHGLIVLRLRH-LNINAIRDYSFKRLYRLKVLEISHWPYLDTM 216

Query: 622 PEAWMQNSSTSLESLAIDSCDSLTYIARIQLP--PSLKRLIIFRCDNLRFNSLRKLKISG 679
               +     +L SL+I  C +LT +  + +     L+ L      NL +N +  ++   
Sbjct: 217 TPNCLYG--LNLTSLSITHC-NLTAVPYLAVRHLVYLRFL------NLSYNPISTIE--- 264

Query: 680 GCPDLVSSPRFPASLTELKISDMPSLERL-------SSIGE----NLTSLKFLDLDNCPK 728
                       + L      ++  L+ +       + +       L  L+ L++    +
Sbjct: 265 -----------GSML-----HELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGN-Q 307

Query: 729 LKYFSK---QGLPKSLLRLIIDECPLI 752
           L    +     +  +L  LI+D  PL 
Sbjct: 308 LTTLEESVFHSVG-NLETLILDSNPLA 333

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 43.2 bits (102), Expect = 2e-04
 Identities = 26/110 (23%), Positives = 46/110 (41%), Gaps = 6/110 (5%)

Query: 195 NLPRLRVFSLRGYNIFELPK-AIENLKHLRFLDLSTTKIEILRESI-NTLYNLHTLLLED 252
            L  L   +L   N+  +P  A+ +L  L  L L    I  +R+     LY L  L +  
Sbjct: 150 GLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISH 209

Query: 253 CRRLKKLCKDMGNLTKLHHLN--NSNVGSLEEMLMLKSLVHLQGTLEISR 300
              L  +  +      L  L+  + N+ ++   L ++ LV+L+  L +S 
Sbjct: 210 WPYLDTMTPNCLYGLNLTSLSITHCNLTAVPY-LAVRHLVYLR-FLNLSY 257

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score = 43.7 bits (104), Expect = 1e-04
 Identities = 25/128 (19%), Positives = 44/128 (34%), Gaps = 25/128 (19%)

Query: 195 NLPRLRVFSLRGYNIF--ELPKAIENLKHLRFLDLSTTKIE-ILRESINTLYNLHTLLLE 251
           NLP L    + G N     +P AI  L  L +L ++ T +   + + ++ +  L TL   
Sbjct: 74  NLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFS 133

Query: 252 DCRRLKKLC----KDMGNLTKLHHL---NNSNVGSL-EEMLMLKSLV--------HLQGT 295
                  L       + +L  L  +    N   G++ +       L          L G 
Sbjct: 134 YN----ALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGK 189

Query: 296 L--EISRL 301
           +    + L
Sbjct: 190 IPPTFANL 197

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 43.6 bits (103), Expect = 2e-04
 Identities = 37/194 (19%), Positives = 68/194 (35%), Gaps = 33/194 (17%)

Query: 567 NALESLPEAWMHNSNSSLESLKIRSCNSLVSFPDFALP--SQLRTVTIKGCDALESLPEA 624
           N L  +P        S L  L +R+ N + S P +A      L  + +     LE + E 
Sbjct: 133 NWLTVIPSGAFEY-LSKLRELWLRN-NPIESIPSYAFNRVPSLMRLDLGELKKLEYISEG 190

Query: 625 WMQNSSTSLESLAIDSCDSLTYIARIQLPPSLKRLIIFRCDNLRFNSLRKLKISGGCPDL 684
             +    +L+ L +  C ++  +  +     L+ L       +  N   +++        
Sbjct: 191 AFEGL-FNLKYLNLGMC-NIKDMPNLTPLVGLEEL------EMSGNHFPEIR-------- 234

Query: 685 VSSPRFPASLTELKISDMPSLERLSSIGE----NLTSLKFLDLDNCPKLKYFSK---QGL 737
             S    +SL +L + +     ++S I       L SL  L+L +   L          L
Sbjct: 235 PGSFHGLSSLKKLWVMNS----QVSLIERNAFDGLASLVELNLAHN-NLSSLPHDLFTPL 289

Query: 738 PKSLLRLIIDECPL 751
              L+ L +   P 
Sbjct: 290 R-YLVELHLHHNPW 302

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 42.8 bits (101), Expect = 3e-04
 Identities = 19/86 (22%), Positives = 38/86 (44%), Gaps = 4/86 (4%)

Query: 193 LLNLPRLRVFSLRGYNIFELPKAIENLKHLRFLDLSTTKIEILRE-SINTLYNLHTLLLE 251
              L  L+  +L   NI ++P  +  L  L  L++S      +R  S + L +L  L + 
Sbjct: 192 FEGLFNLKYLNLGMCNIKDMP-NLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVM 250

Query: 252 DCRRLKKLCKDM-GNLTKLHHLNNSN 276
           +  ++  + ++    L  L  LN ++
Sbjct: 251 NS-QVSLIERNAFDGLASLVELNLAH 275

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron} Length = 329

 Score = 41.7 bits (98), Expect = 5e-04
 Identities = 31/214 (14%), Positives = 64/214 (29%), Gaps = 57/214 (26%)

Query: 564 EDCNALES--LPEAWMHNSNSSLESLKIRSCNSLVSFPD-----FALPSQLRTVTIKGCD 616
           + C+ L+   + +     +  +L    +    + +  P      +   ++         +
Sbjct: 121 KGCDNLKICQIRK----KTAPNLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFIEGE 176

Query: 617 ALESLPEAWMQNSSTSLESLAIDSCDSLTYIARIQLPPSL----KRLIIFRCDNLR---- 668
            LE+        +   LE   + +      I  + +   L     +LI     NL     
Sbjct: 177 PLETT---IQVGAMGKLEDEIMKAGLQPRDINFLTIEGKLDNADFKLIRDYMPNLVSLDI 233

Query: 669 ------------F---NSLRKLKIS-----------GGCPDLVSSPRFPASLTELKI--- 699
                       F     L K+K+              C  L  +   PAS+T ++    
Sbjct: 234 SKTNATTIPDFTFAQKKYLLKIKLPHNLKTIGQRVFSNCGRLAGTLELPASVTAIEFGAF 293

Query: 700 SDMPSLERLSSIGENLTSLK---FLDLDNCPKLK 730
               +L  + + G+ +T+L    F    N    K
Sbjct: 294 MGCDNLRYVLATGDKITTLGDELF---GNGVPSK 324

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 41.6 bits (98), Expect = 6e-04
 Identities = 42/252 (16%), Positives = 86/252 (34%), Gaps = 29/252 (11%)

Query: 489 PTDLSSLKLVHSR--DMAKEVFEQGLPKLERLEIQHVREQTYLWRSETRLPQDIRSLNRL 546
              + SL L ++R   ++     Q    L+ L +      T     E      + SL  L
Sbjct: 51  TEAVKSLDLSNNRITYISNSDL-QRCVNLQALVLTSNGINTI----EEDSFSSLGSLEHL 105

Query: 547 QISRCPQLISL----------LRTVKIEDCNALESLPEAWMHNSNSSLESLKIRSCNSLV 596
            +S    L +L          L  + +   N  ++L E  + +  + L+ L++ + ++  
Sbjct: 106 DLSYN-YLSNLSSSWFKPLSSLTFLNLLG-NPYKTLGETSLFSHLTKLQILRVGNMDTFT 163

Query: 597 SFPD--FALPSQLRTVTIKGCDALESLPEAWMQNSSTSLESLAIDSCDSLTYIARIQLPP 654
                 FA  + L  + I   D L+S     +++   ++  L +        +  I    
Sbjct: 164 KIQRKDFAGLTFLEELEIDASD-LQSYEPKSLKSI-QNVSHLILHMK-QHILLLEI---- 216

Query: 655 SLKRLIIFRCDNLRFNSLRKLKISGGCPDLVSSPRFPASLTELKISDMPSLERLSSIGEN 714
            +       C  LR   L     S       +S     +   +KI+D   L ++  +   
Sbjct: 217 FVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDES-LFQVMKLLNQ 275

Query: 715 LTSLKFLDLDNC 726
           ++ L  L+    
Sbjct: 276 ISGLLELEFSRN 287

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 41.8 bits (99), Expect = 9e-04
 Identities = 21/106 (19%), Positives = 37/106 (34%), Gaps = 11/106 (10%)

Query: 194 LNLPRLRVFSLRGYNIFELPKAIENLKHLRFLDLSTTKIEILRESINTLYNLHTLLLEDC 253
           ++L    +          +  ++ +L  L  L LS + I           +L +L L   
Sbjct: 55  IDLSSKPLNVGFS----AVSSSLLSLTGLESLFLSNSHINGSVSGFKCSASLTSLDLSRN 110

Query: 254 RRLKKL--CKDMGNLTKLHHLNNSN-----VGSLEEMLMLKSLVHL 292
                +     +G+ + L  LN S+      G +   L L SL  L
Sbjct: 111 SLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVL 156

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	763
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	100.0
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	100.0
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	100.0
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	100.0
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	100.0
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	100.0
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	99.98
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	99.98
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	99.97
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	99.97
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	99.97
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	99.97
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	99.97
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	99.97
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	99.97
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	99.96
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	99.96
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	99.96
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	99.96
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	99.96
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	99.96
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	99.96
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	99.95
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	99.95
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	99.94
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	99.94
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	99.94
1o6v_A	466	Internalin A; bacterial infection, extracellular r	99.93
1o6v_A	466	Internalin A; bacterial infection, extracellular r	99.92
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	99.92
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	99.91
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	99.91
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	99.9
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	99.9
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	99.89
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	99.88
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	99.88
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	99.88
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	99.87
2a5y_B	549	CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis	99.87
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	99.87
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	99.83
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	99.82
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	99.82
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	99.82
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	99.8
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	99.8
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	99.79
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	99.77
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	99.77
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	99.77
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	99.76
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	99.75
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	99.73
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	99.73
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	99.73
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	99.73
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	99.72
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	99.72
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	99.72
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	99.71
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	99.71
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	99.7
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	99.7
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	99.69
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	99.68
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	99.68
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	99.67
3sfz_A	1249	APAF-1, apoptotic peptidase activating factor 1; a	99.67
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	99.67
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	99.66
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	99.64
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	99.63
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	99.61
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	99.61
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	99.6
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	99.59
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	99.59
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	99.57
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	99.57
1z6t_A	591	APAF-1, apoptotic protease activating factor 1; ca	99.56
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	99.56
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	99.54
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	99.53
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	99.53
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	99.52
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	99.51
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	99.51
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	99.5
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	99.49
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	99.49
3m19_A	251	Variable lymphocyte receptor A diversity region; a	99.46
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	99.46
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	99.45
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	99.42
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	99.4
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	99.38
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	99.37
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	99.36
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	99.36
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	99.35
3m19_A	251	Variable lymphocyte receptor A diversity region; a	99.35
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	99.35
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	99.34
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	99.33
3e6j_A	229	Variable lymphocyte receptor diversity region; var	99.32
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	99.32
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	99.32
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	99.31
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	99.31
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	99.3
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	99.27
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	99.27
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	99.26
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	99.25
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	99.25
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	99.23
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.22
3e6j_A	229	Variable lymphocyte receptor diversity region; var	99.21
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	99.18
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.17
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	99.17
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.16
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	99.15
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	99.14
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	99.13
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	99.12
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.1
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	99.05
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	99.05
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	99.05
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	99.05
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	99.01
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	99.01
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	98.98
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	98.98
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	98.95
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	98.94
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	98.91
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	98.91
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	98.89
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	98.85
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	98.71
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	98.67
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	98.6
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	98.51
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	98.37
4fs7_A	394	Uncharacterized protein; leucine-rich repeats, pro	98.37
4fs7_A	394	Uncharacterized protein; leucine-rich repeats, pro	98.32
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	98.22
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	98.18
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	98.07
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	97.93
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	97.85
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	97.82
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	97.72
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	97.6
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	97.53
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	97.48
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	97.32
4gt6_A	394	Cell surface protein; leucine rich repeats, putati	97.2
4gt6_A	394	Cell surface protein; leucine rich repeats, putati	96.98
4h09_A	379	Hypothetical leucine rich repeat protein; two LRR_	96.67
4h09_A	379	Hypothetical leucine rich repeat protein; two LRR_	96.31
3rfe_A	130	Platelet glycoprotein IB beta chain; platelet surf	95.83
3rfe_A	130	Platelet glycoprotein IB beta chain; platelet surf	94.35
1pgv_A	197	TMD-1, tropomodulin TMD-1; structural genomics, PS	91.01
1pgv_A	197	TMD-1, tropomodulin TMD-1; structural genomics, PS	89.47
2fna_A	357	Conserved hypothetical protein; structural genomic	87.73
2qen_A	350	Walker-type ATPase; unknown function; HET: ADP; 2.	87.05
1w5s_A	412	Origin recognition complex subunit 2 ORC2; replica	82.52

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=100.00  E-value=5.7e-39  Score=373.37  Aligned_cols=417  Identities=18%  Similarity=0.130  Sum_probs=251.4

Q ss_pred             hhhccCCCCcccEEEecCCCCCccCcccCCCCcccEEecCCCCch-hcch--hhhhcccccEEeeccccccccccccc-c
Q 039689          189 VLQRLLNLPRLRVFSLRGYNIFELPKAIENLKHLRFLDLSTTKIE-ILRE--SINTLYNLHTLLLEDCRRLKKLCKDM-G  264 (763)
Q Consensus       189 ~~~~~~~l~~Lr~L~L~~~~i~~lp~~~~~l~~L~~L~L~~~~i~-~lp~--~~~~L~~L~~L~L~~~~~l~~lp~~i-~  264 (763)
                      ++.++.++++|+.++++.+.+..+|+.|+.+++|++|+|++|.++ .+|.  .++++++|++|++++|.....+|..+ +
T Consensus        69 l~~~l~~L~~L~~l~~~~~~~~~l~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~  148 (768)
T 3rgz_A           69 VSSSLLSLTGLESLFLSNSHINGSVSGFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGL  148 (768)
T ss_dssp             HHHHTTTCTTCCEEECTTSCEEECCCCCCCCTTCCEEECCSSEEEEEGGGGGGGGGCTTCCEEECCSSEEECCSSCCSCC
T ss_pred             cChhHhccCcccccCCcCCCcCCCchhhccCCCCCEEECCCCcCCCcCCChHHHhCCCCCCEEECcCCccCCcCCHHHhc
Confidence            677888999999999999998778899999999999999999988 4677  89999999999999976666677665 8


Q ss_pred             CcccccccccCCccccccccc-----CCCccCCCceeeecCcccccCcccchhhhhcCcccccceEEeeccCCCCCCccH
Q 039689          265 NLTKLHHLNNSNVGSLEEMLM-----LKSLVHLQGTLEISRLENVKGVGDASEVQLNSKVNLKALYLQWGVRDAVEPKTE  339 (763)
Q Consensus       265 ~L~~L~~L~l~~~~~l~~l~~-----l~~L~~L~~~L~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~  339 (763)
                      ++++|++|++++|. +...+.     +.++++|+ .+.+.+..-..      ...+..+++|+.|++++|......    
T Consensus       149 ~l~~L~~L~Ls~n~-l~~~~~~~~~~~~~l~~L~-~L~Ls~n~l~~------~~~~~~l~~L~~L~Ls~n~l~~~~----  216 (768)
T 3rgz_A          149 KLNSLEVLDLSANS-ISGANVVGWVLSDGCGELK-HLAISGNKISG------DVDVSRCVNLEFLDVSSNNFSTGI----  216 (768)
T ss_dssp             CCTTCSEEECCSSC-CEEETHHHHHHTTCCTTCC-EEECCSSEEES------CCBCTTCTTCCEEECCSSCCCSCC----
T ss_pred             cCCCCCEEECCCCc-cCCcCChhhhhhccCCCCC-EEECCCCcccc------cCCcccCCcCCEEECcCCcCCCCC----
Confidence            89999999999997 554332     56777777 77776542211      112256777888888776543321    


Q ss_pred             HHHhhcCCCCCCc-eEEEeeeCCC-CCCCccCCCCCCCceEEEEeccCCCCCCCCCCCCCCCCcceecccCCceEeCccc
Q 039689          340 TQVIDMLKPHQKL-ELTITGYGGT-KFPIWLGDSLFSKLMLLKFDNCGTCTSLPSVGQLPFLKDPVISGMGRVKIVGSEF  417 (763)
Q Consensus       340 ~~~l~~l~~l~~L-~L~~~~~~~~-~~p~~~~~~~~~~L~~L~l~~~~~~~~l~~l~~l~~L~~L~l~~~~~l~~~~~~~  417 (763)
                          ..+..++.| .|++.++... .+|.++..  +++|+.|++++|...+.+|.. .+++|++|++++|.....++..+
T Consensus       217 ----~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~--l~~L~~L~Ls~n~l~~~~~~~-~l~~L~~L~L~~n~l~~~ip~~~  289 (768)
T 3rgz_A          217 ----PFLGDCSALQHLDISGNKLSGDFSRAIST--CTELKLLNISSNQFVGPIPPL-PLKSLQYLSLAENKFTGEIPDFL  289 (768)
T ss_dssp             ----CBCTTCCSCCEEECCSSCCCSCHHHHTTT--CSSCCEEECCSSCCEESCCCC-CCTTCCEEECCSSEEEESCCCCS
T ss_pred             ----cccccCCCCCEEECcCCcCCCcccHHHhc--CCCCCEEECCCCcccCccCcc-ccCCCCEEECcCCccCCccCHHH
Confidence                124555666 6666666554 34555554  677777777777655555544 66777777777665443333222


Q ss_pred             cCCCcCCCCCCcceeeccccchhhhcCCCC---cCCcccEEEEecCcc---hhh-cCCCCCcccEEEEecCCccc-cc--
Q 039689          418 YGSSCSVSFPSLETLFFVDICSKLQGTLPE---RLLLLEKLNIFRCEQ---LLV-TLQCLPALRELEIDGCKGVV-LS--  487 (763)
Q Consensus       418 ~~~~~~~~f~~L~~L~l~~~~~~l~~~~~~---~~~~L~~L~l~~~~~---l~~-~l~~l~~L~~L~l~~~~~~~-~~--  487 (763)
                      .+     .+++|++|++.+  +.+.+.+|.   .+++|++|++.+|..   ++. .+..+++|++|++++|.... .+  
T Consensus       290 ~~-----~~~~L~~L~Ls~--n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~ip~~~l~~l~~L~~L~Ls~n~l~~~~p~~  362 (768)
T 3rgz_A          290 SG-----ACDTLTGLDLSG--NHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPES  362 (768)
T ss_dssp             CT-----TCTTCSEEECCS--SEEEECCCGGGGGCTTCCEEECCSSEEEEECCHHHHTTCTTCCEEECCSSEEEECCCTT
T ss_pred             Hh-----hcCcCCEEECcC--CcCCCccchHHhcCCCccEEECCCCcccCcCCHHHHhcCCCCCEEeCcCCccCccccHH
Confidence            11     136666666665  334334442   455666666666642   222 25556666666666654321 11  


Q ss_pred             --C---------------------------CCccccceeccccch-hhhhhcCCCCCCceEEEeccCCccccccccCcCC
Q 039689          488 --S---------------------------PTDLSSLKLVHSRDM-AKEVFEQGLPKLERLEIQHVREQTYLWRSETRLP  537 (763)
Q Consensus       488 --~---------------------------~~~L~~L~~~~~~~~-~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~p  537 (763)
                        .                           ++.++.|.+.++... .....+..+++|++|++++|....       .+|
T Consensus       363 l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~-------~~p  435 (768)
T 3rgz_A          363 LTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSG-------TIP  435 (768)
T ss_dssp             HHHHTTTCSEEECCSSEEEEECCTTTTCSTTCCCCEEECCSSEEEEECCGGGGGCTTCCEEECCSSEEES-------CCC
T ss_pred             HHhhhcCCcEEEccCCCcCCCcChhhhhcccCCccEEECCCCccccccCHHHhcCCCCCEEECcCCcccC-------ccc
Confidence              0                           223333333333222 222223445555555555554322       222


Q ss_pred             ---ccccccCceeeccCCchhh---------hcceeeeccCCCcccccchhhhcCCCCcceEEEecCccccccCC-CCCC
Q 039689          538 ---QDIRSLNRLQISRCPQLIS---------LLRTVKIEDCNALESLPEAWMHNSNSSLESLKIRSCNSLVSFPD-FALP  604 (763)
Q Consensus       538 ---~~l~~L~~L~l~~~~~l~~---------~L~~L~l~~~~~l~~l~~~~~~~~l~~L~~L~l~~c~~l~~~~~-~~~~  604 (763)
                         ..+++|+.|+++++.-...         .|++|++++|...+.+|..+.  .+++|++|++++|.....+|. +..+
T Consensus       436 ~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~--~l~~L~~L~L~~N~l~~~~p~~~~~l  513 (768)
T 3rgz_A          436 SSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLS--NCTNLNWISLSNNRLTGEIPKWIGRL  513 (768)
T ss_dssp             GGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGG--GCTTCCEEECCSSCCCSCCCGGGGGC
T ss_pred             HHHhcCCCCCEEECCCCcccCcCCHHHcCCCCceEEEecCCcccCcCCHHHh--cCCCCCEEEccCCccCCcCChHHhcC
Confidence               2334555566555432211         166666666544444554432  256666666666654445554 4555


Q ss_pred             CCccEEEEccCCCCCCCchhhhcCCCCCcceEeeccCC
Q 039689          605 SQLRTVTIKGCDALESLPEAWMQNSSTSLESLAIDSCD  642 (763)
Q Consensus       605 ~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~c~  642 (763)
                      ++|++|++++|...+.+|..+  ..+++|+.|++++|+
T Consensus       514 ~~L~~L~L~~N~l~~~~p~~l--~~l~~L~~L~Ls~N~  549 (768)
T 3rgz_A          514 ENLAILKLSNNSFSGNIPAEL--GDCRSLIWLDLNTNL  549 (768)
T ss_dssp             TTCCEEECCSSCCEEECCGGG--GGCTTCCEEECCSSE
T ss_pred             CCCCEEECCCCcccCcCCHHH--cCCCCCCEEECCCCc
Confidence            666666666665555666655  566666666666663

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=100.00  E-value=4.5e-36  Score=348.99  Aligned_cols=542  Identities=17%  Similarity=0.092  Sum_probs=373.2

Q ss_pred             HHHHHhcCceEEecCCCCCcchhhhhhccCCCCcccEEEecCCCCCc----cCcccCCCCcccEEecCCCCchhcchhhh
Q 039689          165 LTRWAAGETCFRMEDTPEGERRQNVLQRLLNLPRLRVFSLRGYNIFE----LPKAIENLKHLRFLDLSTTKIEILRESIN  240 (763)
Q Consensus       165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~~----lp~~~~~l~~L~~L~L~~~~i~~lp~~~~  240 (763)
                      ++.|.....|+.|.|+.|.            -.+++.|+|+++.+..    +|.++..+++|++++++.+.+..+|..|+
T Consensus        30 l~~W~~~~~~C~w~gv~C~------------~~~v~~L~L~~~~l~g~~~~l~~~l~~L~~L~~l~~~~~~~~~l~~~~~   97 (768)
T 3rgz_A           30 LPDWSSNKNPCTFDGVTCR------------DDKVTSIDLSSKPLNVGFSAVSSSLLSLTGLESLFLSNSHINGSVSGFK   97 (768)
T ss_dssp             STTCCTTSCGGGSTTEEEE------------TTEEEEEECTTSCCCEEHHHHHHHTTTCTTCCEEECTTSCEEECCCCCC
T ss_pred             ccCCCCCCCCcCCcceEEC------------CCcEEEEECCCCCcCCccCccChhHhccCcccccCCcCCCcCCCchhhc
Confidence            3556666677888776553            2478999999998765    78899999999999999999988889999


Q ss_pred             hcccccEEeeccccccccccc--cccCcccccccccCCccccccccc--CCCccCCCceeeecCcccccCcccchhhh--
Q 039689          241 TLYNLHTLLLEDCRRLKKLCK--DMGNLTKLHHLNNSNVGSLEEMLM--LKSLVHLQGTLEISRLENVKGVGDASEVQ--  314 (763)
Q Consensus       241 ~L~~L~~L~L~~~~~l~~lp~--~i~~L~~L~~L~l~~~~~l~~l~~--l~~L~~L~~~L~~~~~~~~~~~~~~~~~~--  314 (763)
                      ++++|++|+|++|.....+|.  .++++++|++|++++|.....+|.  +.++++|+ .|++.+..    +.......  
T Consensus        98 ~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~-~L~Ls~n~----l~~~~~~~~~  172 (768)
T 3rgz_A           98 CSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLE-VLDLSANS----ISGANVVGWV  172 (768)
T ss_dssp             CCTTCCEEECCSSEEEEEGGGGGGGGGCTTCCEEECCSSEEECCSSCCSCCCCTTCS-EEECCSSC----CEEETHHHHH
T ss_pred             cCCCCCEEECCCCcCCCcCCChHHHhCCCCCCEEECcCCccCCcCCHHHhccCCCCC-EEECCCCc----cCCcCChhhh
Confidence            999999999999776667888  899999999999999973333343  36788888 88887632    23333333  


Q ss_pred             -hcCcccccceEEeeccCCCCCCccHHHHhhcCCCCCCc-eEEEeeeCCCCCCCccCCCCCCCceEEEEeccCCCCCCC-
Q 039689          315 -LNSKVNLKALYLQWGVRDAVEPKTETQVIDMLKPHQKL-ELTITGYGGTKFPIWLGDSLFSKLMLLKFDNCGTCTSLP-  391 (763)
Q Consensus       315 -l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~l~~l~~L-~L~~~~~~~~~~p~~~~~~~~~~L~~L~l~~~~~~~~l~-  391 (763)
                       +.++++|+.|++++|......+         ...++.| .|++.++.....++.++.  +++|++|++++|...+.+| 
T Consensus       173 ~~~~l~~L~~L~Ls~n~l~~~~~---------~~~l~~L~~L~Ls~n~l~~~~~~l~~--l~~L~~L~Ls~n~l~~~~~~  241 (768)
T 3rgz_A          173 LSDGCGELKHLAISGNKISGDVD---------VSRCVNLEFLDVSSNNFSTGIPFLGD--CSALQHLDISGNKLSGDFSR  241 (768)
T ss_dssp             HTTCCTTCCEEECCSSEEESCCB---------CTTCTTCCEEECCSSCCCSCCCBCTT--CCSCCEEECCSSCCCSCHHH
T ss_pred             hhccCCCCCEEECCCCcccccCC---------cccCCcCCEEECcCCcCCCCCccccc--CCCCCEEECcCCcCCCcccH
Confidence             7889999999998886543221         2456777 888888877665555665  8999999999998766666 


Q ss_pred             CCCCCCCCCcceecccCCceEeCccccCCCcCCCCCCcceeeccccchhhhcCCCCc----CCcccEEEEecCc---chh
Q 039689          392 SVGQLPFLKDPVISGMGRVKIVGSEFYGSSCSVSFPSLETLFFVDICSKLQGTLPER----LLLLEKLNIFRCE---QLL  464 (763)
Q Consensus       392 ~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~f~~L~~L~l~~~~~~l~~~~~~~----~~~L~~L~l~~~~---~l~  464 (763)
                      .++.+++|++|++++|.....++.        ..+++|++|++.+  +.+.+.+|..    +++|++|++.+|.   ..+
T Consensus       242 ~l~~l~~L~~L~Ls~n~l~~~~~~--------~~l~~L~~L~L~~--n~l~~~ip~~~~~~~~~L~~L~Ls~n~l~~~~p  311 (768)
T 3rgz_A          242 AISTCTELKLLNISSNQFVGPIPP--------LPLKSLQYLSLAE--NKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVP  311 (768)
T ss_dssp             HTTTCSSCCEEECCSSCCEESCCC--------CCCTTCCEEECCS--SEEEESCCCCSCTTCTTCSEEECCSSEEEECCC
T ss_pred             HHhcCCCCCEEECCCCcccCccCc--------cccCCCCEEECcC--CccCCccCHHHHhhcCcCCEEECcCCcCCCccc
Confidence            789999999999999865443322        2488999999998  4555566643    4899999999996   345


Q ss_pred             hcCCCCCcccEEEEecCCcc-c-----ccCCCccccceeccccch-hhhhhcCCCC-CCceEEEeccCCcccccc-----
Q 039689          465 VTLQCLPALRELEIDGCKGV-V-----LSSPTDLSSLKLVHSRDM-AKEVFEQGLP-KLERLEIQHVREQTYLWR-----  531 (763)
Q Consensus       465 ~~l~~l~~L~~L~l~~~~~~-~-----~~~~~~L~~L~~~~~~~~-~~~~~~~~~~-~L~~L~l~~~~~l~~l~~-----  531 (763)
                      ..+..+++|++|++++|... .     +..+++|+.|.+.++... ..+..+..++ +|++|++++|.....+..     
T Consensus       312 ~~~~~l~~L~~L~L~~n~l~~~ip~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~  391 (768)
T 3rgz_A          312 PFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQN  391 (768)
T ss_dssp             GGGGGCTTCCEEECCSSEEEEECCHHHHTTCTTCCEEECCSSEEEECCCTTHHHHTTTCSEEECCSSEEEEECCTTTTCS
T ss_pred             hHHhcCCCccEEECCCCcccCcCCHHHHhcCCCCCEEeCcCCccCccccHHHHhhhcCCcEEEccCCCcCCCcChhhhhc
Confidence            56788999999999999764 2     335567777777665433 1111112222 566666666543221100     


Q ss_pred             ----------cc----CcCC---ccccccCceeeccCCchh---------hhcceeeeccCCCcccccchhhhcCCCCcc
Q 039689          532 ----------SE----TRLP---QDIRSLNRLQISRCPQLI---------SLLRTVKIEDCNALESLPEAWMHNSNSSLE  585 (763)
Q Consensus       532 ----------~~----~~~p---~~l~~L~~L~l~~~~~l~---------~~L~~L~l~~~~~l~~l~~~~~~~~l~~L~  585 (763)
                                ..    +.+|   ..+++|+.|+++++.-..         ..|+.|++++|...+.+|..+..  +++|+
T Consensus       392 ~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~--l~~L~  469 (768)
T 3rgz_A          392 PKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMY--VKTLE  469 (768)
T ss_dssp             TTCCCCEEECCSSEEEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGG--CTTCC
T ss_pred             ccCCccEEECCCCccccccCHHHhcCCCCCEEECcCCcccCcccHHHhcCCCCCEEECCCCcccCcCCHHHcC--CCCce
Confidence                      00    0222   234556666666543211         01677777776555556655332  67777


Q ss_pred             eEEEecCccccccCC-CCCCCCccEEEEccCCCCCCCchhhhcCCCCCcceEeeccCCCcccccccc-CCCCCcEEEEec
Q 039689          586 SLKIRSCNSLVSFPD-FALPSQLRTVTIKGCDALESLPEAWMQNSSTSLESLAIDSCDSLTYIARIQ-LPPSLKRLIIFR  663 (763)
Q Consensus       586 ~L~l~~c~~l~~~~~-~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~-~~~~L~~L~l~~  663 (763)
                      +|++++|.....+|. +..+++|++|++++|...+.+|..+  ..+++|+.|++++|.....+|..- -.++|+.|++++
T Consensus       470 ~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~--~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~  547 (768)
T 3rgz_A          470 TLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWI--GRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNT  547 (768)
T ss_dssp             EEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGG--GGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCS
T ss_pred             EEEecCCcccCcCCHHHhcCCCCCEEEccCCccCCcCChHH--hcCCCCCEEECCCCcccCcCCHHHcCCCCCCEEECCC
Confidence            777777665545554 5666778888888876666777766  677888888888874433444321 246777777766


Q ss_pred             CCCC----------------------------------------------------------------------------
Q 039689          664 CDNL----------------------------------------------------------------------------  667 (763)
Q Consensus       664 c~~l----------------------------------------------------------------------------  667 (763)
                      |.-.                                                                            
T Consensus       548 N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~  627 (768)
T 3rgz_A          548 NLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPT  627 (768)
T ss_dssp             SEEESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCS
T ss_pred             CccCCcCChHHhcccchhhhhccccccccccccccccccccccccccccccccchhhhccccccccccccceecccCchh
Confidence            5311                                                                            


Q ss_pred             --CCCccceEEecCCCCCcc-ccCC---CCCCcCeEeeccCCCCccccCCCCCCCCcCceecccCCCCccccCC-Ccccc
Q 039689          668 --RFNSLRKLKISGGCPDLV-SSPR---FPASLTELKISDMPSLERLSSIGENLTSLKFLDLDNCPKLKYFSKQ-GLPKS  740 (763)
Q Consensus       668 --~~~~L~~L~l~~~~~~l~-~~~~---~~~~L~~L~l~~~~~l~~ip~~~~~l~~L~~L~l~~c~~L~~l~~~-~~~~~  740 (763)
                        .+.+|+.|++++  +.+. .+|.   .+++|+.|++++|..-..+|..++++++|++|++++|.--..+|.. .-.++
T Consensus       628 ~~~l~~L~~LdLs~--N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~~  705 (768)
T 3rgz_A          628 FDNNGSMMFLDMSY--NMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTM  705 (768)
T ss_dssp             CSSSBCCCEEECCS--SCCBSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCCGGGGGCCC
T ss_pred             hhccccccEEECcC--CcccccCCHHHhccccCCEEeCcCCccCCCCChHHhCCCCCCEEECCCCcccCcCChHHhCCCC
Confidence              124567777776  3444 4444   5678888888886555688888888888888888887443356542 33468


Q ss_pred             cceeeeccCh
Q 039689          741 LLRLIIDECP  750 (763)
Q Consensus       741 L~~L~i~~C~  750 (763)
                      |+.|++++|+
T Consensus       706 L~~L~ls~N~  715 (768)
T 3rgz_A          706 LTEIDLSNNN  715 (768)
T ss_dssp             CSEEECCSSE
T ss_pred             CCEEECcCCc
Confidence            8888888884

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=100.00  E-value=6.5e-34  Score=328.11  Aligned_cols=507  Identities=17%  Similarity=0.153  Sum_probs=276.2

Q ss_pred             hhccCCCCcccEEEecCCCCCcc-CcccCCCCcccEEecCCCCchhcch-hhhhcccccEEeecccccccccc-ccccCc
Q 039689          190 LQRLLNLPRLRVFSLRGYNIFEL-PKAIENLKHLRFLDLSTTKIEILRE-SINTLYNLHTLLLEDCRRLKKLC-KDMGNL  266 (763)
Q Consensus       190 ~~~~~~l~~Lr~L~L~~~~i~~l-p~~~~~l~~L~~L~L~~~~i~~lp~-~~~~L~~L~~L~L~~~~~l~~lp-~~i~~L  266 (763)
                      +..|.++++|++|++++|.++.+ |..|+++++|++|+|++|.++.+|. .|+++++|++|++++| .+..+| ..|+++
T Consensus        42 ~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l  120 (680)
T 1ziw_A           42 AANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSN-SIQKIKNNPFVKQ  120 (680)
T ss_dssp             GGGGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSS-CCCCCCSCTTTTC
T ss_pred             HHHHhCCCcCcEEECCCCccCccCHHHHhcccCcCEEECCCCccCccChhhhccCCCCCEEECCCC-ccCccChhHcccc
Confidence            33456667777777777776665 4566677777777777777776665 4677777777777774 445554 346777


Q ss_pred             ccccccccCCcccccccc--cCCCccCCCceeeecCcccccCcccchhhhh--cCcccccceEEeeccCCCCCCccHHHH
Q 039689          267 TKLHHLNNSNVGSLEEML--MLKSLVHLQGTLEISRLENVKGVGDASEVQL--NSKVNLKALYLQWGVRDAVEPKTETQV  342 (763)
Q Consensus       267 ~~L~~L~l~~~~~l~~l~--~l~~L~~L~~~L~~~~~~~~~~~~~~~~~~l--~~l~~L~~L~l~~~~~~~~~~~~~~~~  342 (763)
                      ++|++|++++|. +...+  .+.++++|+ .+.+.+..    +.......+  ..+++|+.|++++|......+.    .
T Consensus       121 ~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~-~L~L~~n~----l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~----~  190 (680)
T 1ziw_A          121 KNLITLDLSHNG-LSSTKLGTQVQLENLQ-ELLLSNNK----IQALKSEELDIFANSSLKKLELSSNQIKEFSPG----C  190 (680)
T ss_dssp             TTCCEEECCSSC-CSCCCCCSSSCCTTCC-EEECCSSC----CCCBCHHHHGGGTTCEESEEECTTCCCCCBCTT----G
T ss_pred             CCCCEEECCCCc-ccccCchhhcccccCC-EEEccCCc----ccccCHHHhhccccccccEEECCCCcccccChh----h
Confidence            777777777765 44332  245566666 56555421    111222222  2345677777766543322211    0


Q ss_pred             hhcCC------------------------CCCCc-eEEEeeeCCCCC-CCccCCCCCCCceEEEEeccCCCCCCC-CCCC
Q 039689          343 IDMLK------------------------PHQKL-ELTITGYGGTKF-PIWLGDSLFSKLMLLKFDNCGTCTSLP-SVGQ  395 (763)
Q Consensus       343 l~~l~------------------------~l~~L-~L~~~~~~~~~~-p~~~~~~~~~~L~~L~l~~~~~~~~l~-~l~~  395 (763)
                      +..+.                        ..+.| .|.+.++..... |.++.....++|+.|++++|......+ .++.
T Consensus       191 ~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~l~~~~L~~L~Ls~n~l~~~~~~~~~~  270 (680)
T 1ziw_A          191 FHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAW  270 (680)
T ss_dssp             GGGSSEECEEECTTCCCHHHHHHHHHHHHTTSCCCEEECTTSCCCEECTTTTGGGGGSCCCEEECTTSCCCEECTTTTTT
T ss_pred             hhhhhhhhhhhccccccChhhHHHHHHHhhhccccEEEccCCcccccChhHhhccCcCCCCEEECCCCCcCccCcccccC
Confidence            11111                        11344 555555544433 344433112347777777775443333 5677


Q ss_pred             CCCCCcceecccCCceEeCccccCCCcCCCCCCcceeeccccc----------hhhhcCCCCcCCcccEEEEecCcch--
Q 039689          396 LPFLKDPVISGMGRVKIVGSEFYGSSCSVSFPSLETLFFVDIC----------SKLQGTLPERLLLLEKLNIFRCEQL--  463 (763)
Q Consensus       396 l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~f~~L~~L~l~~~~----------~~l~~~~~~~~~~L~~L~l~~~~~l--  463 (763)
                      +++|++|+++++.........+.      .+++|+.|++.+..          +.+.......+++|++|++.+|...  
T Consensus       271 l~~L~~L~L~~n~l~~~~~~~~~------~l~~L~~L~L~~~~~~~~~~~~~lp~i~~~~~~~l~~L~~L~l~~n~l~~~  344 (680)
T 1ziw_A          271 LPQLEYFFLEYNNIQHLFSHSLH------GLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGI  344 (680)
T ss_dssp             CTTCCEEECCSCCBSEECTTTTT------TCTTCCEEECTTCBCCC------CCEECTTTTTTCTTCCEEECCSCCBCCC
T ss_pred             cccccEeeCCCCccCccChhhhc------CCCCccEEeccchhhhcccccccccccChhhcccCCCCCEEECCCCccCCC
Confidence            77777777777655544443332      36777777776420          0011111235667777777776422  


Q ss_pred             -hhcCCCCCcccEEEEecCCccc--cc--C-----CCccccceeccccch-hhhhhcCCCCCCceEEEeccCCccccccc
Q 039689          464 -LVTLQCLPALRELEIDGCKGVV--LS--S-----PTDLSSLKLVHSRDM-AKEVFEQGLPKLERLEIQHVREQTYLWRS  532 (763)
Q Consensus       464 -~~~l~~l~~L~~L~l~~~~~~~--~~--~-----~~~L~~L~~~~~~~~-~~~~~~~~~~~L~~L~l~~~~~l~~l~~~  532 (763)
                       +..+..+++|++|++++|....  ..  .     ...++.|.+.++... .....+..+++|+.|++++|....     
T Consensus       345 ~~~~~~~l~~L~~L~Ls~n~~~~~~l~~~~f~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~-----  419 (680)
T 1ziw_A          345 KSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQ-----  419 (680)
T ss_dssp             CTTTTTTCTTCCEEECTTCBSCCCEECTTTTGGGTTSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCEE-----
T ss_pred             ChhHhccccCCcEEECCCCchhhhhcchhhhcccccCcCceEECCCCCCCeEChhhhhCCCCCCEEeCCCCcCcc-----
Confidence             2245667777777777664211  10  0     123333333333222 122233444555555555544322     


Q ss_pred             cCcCC----ccccccCceeeccCCchhhhcceeeeccCCCcccccchhhhcCCCCcceEEEecCccc--cccCC-CCCCC
Q 039689          533 ETRLP----QDIRSLNRLQISRCPQLISLLRTVKIEDCNALESLPEAWMHNSNSSLESLKIRSCNSL--VSFPD-FALPS  605 (763)
Q Consensus       533 ~~~~p----~~l~~L~~L~l~~~~~l~~~L~~L~l~~~~~l~~l~~~~~~~~l~~L~~L~l~~c~~l--~~~~~-~~~~~  605 (763)
                        .+|    ..+++               |++|++++| .+..++...+. .+++|+.|++++|..-  ..+|. +..++
T Consensus       420 --~~~~~~~~~l~~---------------L~~L~Ls~n-~l~~~~~~~~~-~~~~L~~L~l~~n~l~~~~~~p~~~~~l~  480 (680)
T 1ziw_A          420 --ELTGQEWRGLEN---------------IFEIYLSYN-KYLQLTRNSFA-LVPSLQRLMLRRVALKNVDSSPSPFQPLR  480 (680)
T ss_dssp             --ECCSGGGTTCTT---------------CCEEECCSC-SEEECCTTTTT-TCTTCCEEECTTSCCBCTTCSSCTTTTCT
T ss_pred             --ccCcccccCccc---------------ccEEecCCC-CcceeChhhhh-cCcccccchhccccccccccCCcccccCC
Confidence              111    11222               455555553 34444333222 3677777777665431  23343 45667


Q ss_pred             CccEEEEccCCCCCCCchhhhcCCCCCcceEeeccCCCccccccccCCCCCcEEEEecCCCCCCCccceEEecCCCCCcc
Q 039689          606 QLRTVTIKGCDALESLPEAWMQNSSTSLESLAIDSCDSLTYIARIQLPPSLKRLIIFRCDNLRFNSLRKLKISGGCPDLV  685 (763)
Q Consensus       606 ~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~L~~L~l~~c~~l~~~~L~~L~l~~~~~~l~  685 (763)
                      +|++|++++|. ++.++...+ ..+++|+.|++++| .++.++...+|..-.    ..  --.+++|+.|++++  +.+.
T Consensus       481 ~L~~L~Ls~N~-l~~i~~~~~-~~l~~L~~L~Ls~N-~l~~~~~~~~~~~~~----~~--~~~l~~L~~L~L~~--N~l~  549 (680)
T 1ziw_A          481 NLTILDLSNNN-IANINDDML-EGLEKLEILDLQHN-NLARLWKHANPGGPI----YF--LKGLSHLHILNLES--NGFD  549 (680)
T ss_dssp             TCCEEECCSSC-CCCCCTTTT-TTCTTCCEEECCSS-CCGGGGSTTSTTSCC----CT--TTTCTTCCEEECCS--SCCC
T ss_pred             CCCEEECCCCC-CCcCChhhh-ccccccCEEeCCCC-CccccchhhccCCcc----hh--hcCCCCCCEEECCC--CCCC
Confidence            77777777763 444544322 56777777777776 555554333221000    00  00346777777775  4566


Q ss_pred             ccCC----CCCCcCeEeeccCCCCccccCCC-CCCCCcCceecccCCCCccccCCC---cccccceeeeccCh
Q 039689          686 SSPR----FPASLTELKISDMPSLERLSSIG-ENLTSLKFLDLDNCPKLKYFSKQG---LPKSLLRLIIDECP  750 (763)
Q Consensus       686 ~~~~----~~~~L~~L~l~~~~~l~~ip~~~-~~l~~L~~L~l~~c~~L~~l~~~~---~~~~L~~L~i~~C~  750 (763)
                      .+|.    .+++|++|++++ +.++.+|... ..+++|++|++++| +++.++...   ..++|+.|++++||
T Consensus       550 ~i~~~~~~~l~~L~~L~Ls~-N~l~~l~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~~~~~L~~l~l~~N~  620 (680)
T 1ziw_A          550 EIPVEVFKDLFELKIIDLGL-NNLNTLPASVFNNQVSLKSLNLQKN-LITSVEKKVFGPAFRNLTELDMRFNP  620 (680)
T ss_dssp             CCCTTTTTTCTTCCEEECCS-SCCCCCCTTTTTTCTTCCEEECTTS-CCCBCCHHHHHHHHTTCSEEECTTCC
T ss_pred             CCCHHHcccccCcceeECCC-CCCCcCCHhHhCCCCCCCEEECCCC-cCCccChhHhcccccccCEEEccCCC
Confidence            6664    467888888887 6778887664 77888888888886 677776642   23678888888765

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=100.00  E-value=3.3e-33  Score=317.79  Aligned_cols=486  Identities=16%  Similarity=0.116  Sum_probs=298.0

Q ss_pred             CcccEEEecCCCCCccC-cccCCCCcccEEecCCCCchhc-chhhhhcccccEEeeccccccccc-cccccCcccccccc
Q 039689          197 PRLRVFSLRGYNIFELP-KAIENLKHLRFLDLSTTKIEIL-RESINTLYNLHTLLLEDCRRLKKL-CKDMGNLTKLHHLN  273 (763)
Q Consensus       197 ~~Lr~L~L~~~~i~~lp-~~~~~l~~L~~L~L~~~~i~~l-p~~~~~L~~L~~L~L~~~~~l~~l-p~~i~~L~~L~~L~  273 (763)
                      +++++|++++|.++.++ ..|.++++|++|+|++|.++.+ |..|+++++|++|++++| .+..+ |..|+++++|++|+
T Consensus        32 ~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n-~l~~~~p~~~~~l~~L~~L~  110 (606)
T 3vq2_A           32 SSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGN-PIQSFSPGSFSGLTSLENLV  110 (606)
T ss_dssp             TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTC-CCCCCCTTSSTTCTTCCEEE
T ss_pred             CCcCEEECCCCCcCEeChhhccCCccCcEEeCCCCcccccCHHHhhchhhcCEeECCCC-cccccChhhcCCcccCCEEE
Confidence            78999999999999885 5899999999999999999987 667899999999999995 46555 77899999999999


Q ss_pred             cCCcccccccc--cCCCccCCCceeeecCcccccCccc-chhhhhcCcccccceEEeeccCCCCCCccHHHHhhcCCCCC
Q 039689          274 NSNVGSLEEML--MLKSLVHLQGTLEISRLENVKGVGD-ASEVQLNSKVNLKALYLQWGVRDAVEPKTETQVIDMLKPHQ  350 (763)
Q Consensus       274 l~~~~~l~~l~--~l~~L~~L~~~L~~~~~~~~~~~~~-~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~l~~l~  350 (763)
                      +++|. +..++  .++++++|+ .|.+.+..    +.. ..+..+.++++|+.|++++|........    .+..+..++
T Consensus       111 L~~n~-l~~~~~~~~~~l~~L~-~L~L~~n~----l~~~~lp~~~~~l~~L~~L~Ls~n~l~~~~~~----~~~~l~~L~  180 (606)
T 3vq2_A          111 AVETK-LASLESFPIGQLITLK-KLNVAHNF----IHSCKLPAYFSNLTNLVHVDLSYNYIQTITVN----DLQFLRENP  180 (606)
T ss_dssp             CTTSC-CCCSSSSCCTTCTTCC-EEECCSSC----CCCCCCCGGGGTCTTCCEEECCSSCCCEECTT----TTHHHHHCT
T ss_pred             ccCCc-cccccccccCCCCCCC-EEeCCCCc----ccceechHhHhhcCCCCEEEccCCcceecChh----hhhhhhccc
Confidence            99998 77666  378888888 88876632    221 2345788899999999988865433221    222333333


Q ss_pred             C-c-eEEEeeeCCCCCCCccCCCCCCCceEEEEeccCCCCC-CC-CCCCCCCCCcceecccCCceEeCccccCCCcCCCC
Q 039689          351 K-L-ELTITGYGGTKFPIWLGDSLFSKLMLLKFDNCGTCTS-LP-SVGQLPFLKDPVISGMGRVKIVGSEFYGSSCSVSF  426 (763)
Q Consensus       351 ~-L-~L~~~~~~~~~~p~~~~~~~~~~L~~L~l~~~~~~~~-l~-~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~f  426 (763)
                      . + .+.+.++....+|.....  ..+|+.|++++|..... ++ .++.++.|+.+.+.............   .....+
T Consensus       181 ~~l~~L~l~~n~l~~~~~~~~~--~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~l~~---~~~~~~  255 (606)
T 3vq2_A          181 QVNLSLDMSLNPIDFIQDQAFQ--GIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEI---FEPSIM  255 (606)
T ss_dssp             TCCCEEECTTCCCCEECTTTTT--TCEEEEEEEESCCSCHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSC---CCGGGG
T ss_pred             cccceeeccCCCcceeCccccc--CceeeeeeccCCccchhHHHHHhccccccccccccccccccCCcccc---cChHHh
Confidence            3 3 677777777777766544  34899999999864321 22 45666777766654311110000000   000112


Q ss_pred             CC-----cceeeccccchhhhcCCC--CcCCcccEEEEecCcc--hhhcCCCCCcccEEEEecCCcccccCCCcccccee
Q 039689          427 PS-----LETLFFVDICSKLQGTLP--ERLLLLEKLNIFRCEQ--LLVTLQCLPALRELEIDGCKGVVLSSPTDLSSLKL  497 (763)
Q Consensus       427 ~~-----L~~L~l~~~~~~l~~~~~--~~~~~L~~L~l~~~~~--l~~~l~~l~~L~~L~l~~~~~~~~~~~~~L~~L~~  497 (763)
                      ..     ++.+.+.. .+.+.+..|  ..+++|+.|++.++..  ++ .++.+++|++|++++|....++.+        
T Consensus       256 ~~l~~l~l~~l~l~~-~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~-~l~~~~~L~~L~l~~n~l~~lp~~--------  325 (606)
T 3vq2_A          256 EGLCDVTIDEFRLTY-TNDFSDDIVKFHCLANVSAMSLAGVSIKYLE-DVPKHFKWQSLSIIRCQLKQFPTL--------  325 (606)
T ss_dssp             TTGGGSEEEEEEECC-CTTCCGGGGSCGGGTTCSEEEEESCCCCCCC-CCCTTCCCSEEEEESCCCSSCCCC--------
T ss_pred             hhhhhccHhheeccc-cccccccccccccCCCCCEEEecCccchhhh-hccccccCCEEEcccccCcccccC--------
Confidence            22     33333322 123333332  4567888888887752  33 566677888888888865333311        


Q ss_pred             ccccchhhhhhcCCCCCCceEEEeccCCccccccccCcCCccccccCceeeccCCchh-----------hhcceeeeccC
Q 039689          498 VHSRDMAKEVFEQGLPKLERLEIQHVREQTYLWRSETRLPQDIRSLNRLQISRCPQLI-----------SLLRTVKIEDC  566 (763)
Q Consensus       498 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~p~~l~~L~~L~l~~~~~l~-----------~~L~~L~l~~~  566 (763)
                                   .+++|++|++++|.....+      ....+++|+.|+++++.-..           ..|++|++++|
T Consensus       326 -------------~l~~L~~L~l~~n~~~~~~------~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n  386 (606)
T 3vq2_A          326 -------------DLPFLKSLTLTMNKGSISF------KKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFN  386 (606)
T ss_dssp             -------------CCSSCCEEEEESCSSCEEC------CCCCCTTCCEEECCSSCEEEEEECCHHHHCCSCCCEEECCSC
T ss_pred             -------------CCCccceeeccCCcCccch------hhccCCCCCEEECcCCccCCCcchhhhhccCCcccEeECCCC
Confidence                         3445555555555433211      00233444444444432100           00555555553


Q ss_pred             CCcccccchhhhcCCCCcceEEEecCccccccC--CCCCCCCccEEEEccCCCCCCCchhhhcCCCCCcceEeeccCCCc
Q 039689          567 NALESLPEAWMHNSNSSLESLKIRSCNSLVSFP--DFALPSQLRTVTIKGCDALESLPEAWMQNSSTSLESLAIDSCDSL  644 (763)
Q Consensus       567 ~~l~~l~~~~~~~~l~~L~~L~l~~c~~l~~~~--~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~c~~l  644 (763)
                       .++.+|..+.  .+++|+.|++++|......|  .+..+++|++|++++|......|..+  ..+++|+.|++++| .+
T Consensus       387 -~l~~~~~~~~--~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~--~~l~~L~~L~l~~n-~l  460 (606)
T 3vq2_A          387 -GAIIMSANFM--GLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIF--LGLTSLNTLKMAGN-SF  460 (606)
T ss_dssp             -SEEEECCCCT--TCTTCCEEECTTSEEESTTTTTTTTTCTTCCEEECTTSCCEECCTTTT--TTCTTCCEEECTTC-EE
T ss_pred             -ccccchhhcc--CCCCCCeeECCCCccCCccChhhhhccccCCEEECcCCCCCccchhhh--cCCCCCCEEECCCC-cC
Confidence             3555554322  36777777777665443333  35566777777777775555555555  66777777777777 33


Q ss_pred             cc-cccccCCCCCcEEEEecCCCCCCCccceEEecCCCCCccccCC----CCCCcCeEeeccCCCCccccCCCCCCCCcC
Q 039689          645 TY-IARIQLPPSLKRLIIFRCDNLRFNSLRKLKISGGCPDLVSSPR----FPASLTELKISDMPSLERLSSIGENLTSLK  719 (763)
Q Consensus       645 ~~-l~~~~~~~~L~~L~l~~c~~l~~~~L~~L~l~~~~~~l~~~~~----~~~~L~~L~l~~~~~l~~ip~~~~~l~~L~  719 (763)
                      .. +....+.              .+++|+.|++++  +.+..++.    .+++|++|++++|......|..+..+++|+
T Consensus       461 ~~~~~~~~~~--------------~l~~L~~L~Ls~--n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~  524 (606)
T 3vq2_A          461 KDNTLSNVFA--------------NTTNLTFLDLSK--CQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLS  524 (606)
T ss_dssp             GGGEECSCCT--------------TCTTCCEEECTT--SCCCEECTTTTTTCTTCCEEECCSSCCSCEEGGGTTTCTTCC
T ss_pred             CCcchHHhhc--------------cCCCCCEEECCC--CcCCccChhhhcccccCCEEECCCCcCCCcCHHHccCCCcCC
Confidence            32 2111111              345666666665  23333332    457888888888644444466778888888


Q ss_pred             ceecccCCCCccccCC--CcccccceeeeccCh
Q 039689          720 FLDLDNCPKLKYFSKQ--GLPKSLLRLIIDECP  750 (763)
Q Consensus       720 ~L~l~~c~~L~~l~~~--~~~~~L~~L~i~~C~  750 (763)
                      +|++++| +++.+|..  .++++|+.|++++||
T Consensus       525 ~L~l~~N-~l~~~p~~~~~l~~~L~~l~l~~N~  556 (606)
T 3vq2_A          525 TLDCSFN-RIETSKGILQHFPKSLAFFNLTNNS  556 (606)
T ss_dssp             EEECTTS-CCCCEESCGGGSCTTCCEEECCSCC
T ss_pred             EEECCCC-cCcccCHhHhhhcccCcEEEccCCC
Confidence            8888886 57777763  333468888887754

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=100.00  E-value=1.7e-32  Score=311.97  Aligned_cols=501  Identities=15%  Similarity=0.117  Sum_probs=285.8

Q ss_pred             hhhccCCCCcccEEEecCCCCCcc-CcccCCCCcccEEecCCCCchhc-chhhhhcccccEEeeccccccccccccccCc
Q 039689          189 VLQRLLNLPRLRVFSLRGYNIFEL-PKAIENLKHLRFLDLSTTKIEIL-RESINTLYNLHTLLLEDCRRLKKLCKDMGNL  266 (763)
Q Consensus       189 ~~~~~~~l~~Lr~L~L~~~~i~~l-p~~~~~l~~L~~L~L~~~~i~~l-p~~~~~L~~L~~L~L~~~~~l~~lp~~i~~L  266 (763)
                      +|..+.  +.+++|++++|.++.+ |..|+++++|++|+|++|.++.+ |..|+++++|++|++++|......|..++++
T Consensus        27 iP~~l~--~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l  104 (606)
T 3t6q_A           27 IPGTLP--NSTECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAETALSGP  104 (606)
T ss_dssp             CCTTSC--TTCCEEECTTCCCSEECTTTSTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCSEECTTTTSSC
T ss_pred             CcCCCC--CcCcEEEccCCccCcCChhHhccCccceEEECCCCccceeChhhccCccccCeeeCCCCcccccChhhhccc
Confidence            344443  3689999999999988 67899999999999999999877 7789999999999999964444457779999


Q ss_pred             ccccccccCCcccccccc--cCCCccCCCceeeecCcccccCcccchhhhhcCcccccceEEeeccCCCCCCccHHHHhh
Q 039689          267 TKLHHLNNSNVGSLEEML--MLKSLVHLQGTLEISRLENVKGVGDASEVQLNSKVNLKALYLQWGVRDAVEPKTETQVID  344 (763)
Q Consensus       267 ~~L~~L~l~~~~~l~~l~--~l~~L~~L~~~L~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~  344 (763)
                      ++|++|++++|. +..++  .+.++++|+ .+.+.+..    +.......+..+++|+.|++++|....    .....+.
T Consensus       105 ~~L~~L~L~~n~-i~~l~~~~~~~l~~L~-~L~L~~n~----l~~~~~~~~~~l~~L~~L~L~~n~l~~----~~~~~~~  174 (606)
T 3t6q_A          105 KALKHLFFIQTG-ISSIDFIPLHNQKTLE-SLYLGSNH----ISSIKLPKGFPTEKLKVLDFQNNAIHY----LSKEDMS  174 (606)
T ss_dssp             TTCCEEECTTSC-CSCGGGSCCTTCTTCC-EEECCSSC----CCCCCCCTTCCCTTCCEEECCSSCCCE----ECHHHHH
T ss_pred             ccccEeeccccC-cccCCcchhccCCccc-EEECCCCc----ccccCcccccCCcccCEEEcccCcccc----cChhhhh
Confidence            999999999997 76653  367778887 77776532    222222334447888888887764432    2233455


Q ss_pred             cCCCCCCceEEEeeeCCCCCCCccCCCCCCCceEEEEeccCCCCCCCCCCCCCC--CCcceecccCCceEeCccccCCCc
Q 039689          345 MLKPHQKLELTITGYGGTKFPIWLGDSLFSKLMLLKFDNCGTCTSLPSVGQLPF--LKDPVISGMGRVKIVGSEFYGSSC  422 (763)
Q Consensus       345 ~l~~l~~L~L~~~~~~~~~~p~~~~~~~~~~L~~L~l~~~~~~~~l~~l~~l~~--L~~L~l~~~~~l~~~~~~~~~~~~  422 (763)
                      .+..++.+.+.+.++....+++....  ..+|+.|++++|.....  .+..+.+  ++.+.+..........  . ....
T Consensus       175 ~l~~L~~l~L~l~~n~l~~~~~~~~~--~~~L~~L~l~~~~~~~~--~~~~l~~~~l~~l~~~~~~~~~~~~--i-~~~~  247 (606)
T 3t6q_A          175 SLQQATNLSLNLNGNDIAGIEPGAFD--SAVFQSLNFGGTQNLLV--IFKGLKNSTIQSLWLGTFEDMDDED--I-SPAV  247 (606)
T ss_dssp             TTTTCCSEEEECTTCCCCEECTTTTT--TCEEEEEECTTCSCHHH--HHHHTTTCEEEEEECCCCTTSCCCC--C-CGGG
T ss_pred             hhcccceeEEecCCCccCccChhHhh--hccccccccCCchhHHH--Hhhhccccchhheechhhccccccc--c-ChhH
Confidence            56666655666666666655544333  45777787777642110  0111111  1111111111110000  0 0000


Q ss_pred             CCCC--CCcceeeccccchhhhcCCC---CcCCcccEEEEecCc--chhhcCCCCCcccEEEEecCCcccc-----cCCC
Q 039689          423 SVSF--PSLETLFFVDICSKLQGTLP---ERLLLLEKLNIFRCE--QLLVTLQCLPALRELEIDGCKGVVL-----SSPT  490 (763)
Q Consensus       423 ~~~f--~~L~~L~l~~~~~~l~~~~~---~~~~~L~~L~l~~~~--~l~~~l~~l~~L~~L~l~~~~~~~~-----~~~~  490 (763)
                      ...+  .+|+.|++.+  +.+.+..+   ..+++|++|++.+|.  .++..+..+++|++|++++|.....     ..++
T Consensus       248 ~~~l~~~~L~~L~l~~--n~l~~~~~~~~~~l~~L~~L~l~~n~l~~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~  325 (606)
T 3t6q_A          248 FEGLCEMSVESINLQK--HYFFNISSNTFHCFSGLQELDLTATHLSELPSGLVGLSTLKKLVLSANKFENLCQISASNFP  325 (606)
T ss_dssp             GGGGGGSEEEEEECTT--CCCSSCCTTTTTTCTTCSEEECTTSCCSCCCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCT
T ss_pred             hchhhcCceeEEEeec--CccCccCHHHhccccCCCEEeccCCccCCCChhhcccccCCEEECccCCcCcCchhhhhccC
Confidence            0011  1456666655  22222222   345667777777664  3334455667777777777654332     1122


Q ss_pred             ccccceeccccch--hhhhhcCCCCCCceEEEeccCCccccccccCcCCccccccCceeeccCCchhhhcceeeeccCCC
Q 039689          491 DLSSLKLVHSRDM--AKEVFEQGLPKLERLEIQHVREQTYLWRSETRLPQDIRSLNRLQISRCPQLISLLRTVKIEDCNA  568 (763)
Q Consensus       491 ~L~~L~~~~~~~~--~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~p~~l~~L~~L~l~~~~~l~~~L~~L~l~~~~~  568 (763)
                      +|+.|.+.++...  .+...+..+++|++|++++|.........  .....+++               |++|++++| .
T Consensus       326 ~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~--~~~~~l~~---------------L~~L~l~~n-~  387 (606)
T 3t6q_A          326 SLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCN--LQLRNLSH---------------LQSLNLSYN-E  387 (606)
T ss_dssp             TCSEEECCSCSSCCBCCSSTTTTCTTCCEEECCSSCCCEEEEST--TTTTTCTT---------------CCEEECCSC-S
T ss_pred             cCCEEECCCCCcccccchhhhhccCcCCEEECCCCccccccCcc--hhcccCCC---------------CCEEECCCC-c
Confidence            2222222222111  11222344556666666655433210000  00012222               444555543 3


Q ss_pred             cccccchhhhcCCCCcceEEEecCccccccCC--CCCCCCccEEEEccCCCCCCCchhhhcCCCCCcceEeeccCCCccc
Q 039689          569 LESLPEAWMHNSNSSLESLKIRSCNSLVSFPD--FALPSQLRTVTIKGCDALESLPEAWMQNSSTSLESLAIDSCDSLTY  646 (763)
Q Consensus       569 l~~l~~~~~~~~l~~L~~L~l~~c~~l~~~~~--~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~  646 (763)
                      +..+++..+. .+++|++|++++|......+.  +..+++|++|++++|......|..+  ..+++|+.|++++| .+..
T Consensus       388 l~~~~~~~~~-~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~--~~l~~L~~L~L~~n-~l~~  463 (606)
T 3t6q_A          388 PLSLKTEAFK-ECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLF--DGLPALQHLNLQGN-HFPK  463 (606)
T ss_dssp             CEEECTTTTT-TCTTCSEEECTTCCEECCTTCCTTTTCTTCCEEECTTCCCBTTCTTTT--TTCTTCCEEECTTC-BCGG
T ss_pred             CCcCCHHHhc-CCccCCeEECCCCcCCCcccchhhhCcccCCEEECCCCccCCcCHHHH--hCCCCCCEEECCCC-CCCc
Confidence            3333332222 367777777776654333332  4566777777777775444444444  56777777777777 3332


Q ss_pred             --ccc-ccCCCCCcEEEEecCCCCCCCccceEEecCCCCCccccC-C---CCCCcCeEeeccCCCCccccCCCCCCCCcC
Q 039689          647 --IAR-IQLPPSLKRLIIFRCDNLRFNSLRKLKISGGCPDLVSSP-R---FPASLTELKISDMPSLERLSSIGENLTSLK  719 (763)
Q Consensus       647 --l~~-~~~~~~L~~L~l~~c~~l~~~~L~~L~l~~~~~~l~~~~-~---~~~~L~~L~l~~~~~l~~ip~~~~~l~~L~  719 (763)
                        ++. ..+.              .+++|+.|++++  +.+..++ .   .+++|++|++++|......|..+..+++| 
T Consensus       464 ~~~~~~~~~~--------------~l~~L~~L~Ls~--n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L-  526 (606)
T 3t6q_A          464 GNIQKTNSLQ--------------TLGRLEILVLSF--CDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGI-  526 (606)
T ss_dssp             GEECSSCGGG--------------GCTTCCEEECTT--SCCCEECTTTTTTCTTCCEEECCSSCCCGGGGGGGTTCCSC-
T ss_pred             cccccchhhc--------------cCCCccEEECCC--CccCccChhhhccccCCCEEECCCCccCcCChhHhCccccc-
Confidence              111 1110              345666666665  2344443 2   56789999999965555566677889999 


Q ss_pred             ceecccCCCCccccCCC--cccccceeeeccCh
Q 039689          720 FLDLDNCPKLKYFSKQG--LPKSLLRLIIDECP  750 (763)
Q Consensus       720 ~L~l~~c~~L~~l~~~~--~~~~L~~L~i~~C~  750 (763)
                      +|++++| +++.++...  ..++|+.|++++||
T Consensus       527 ~L~L~~N-~l~~~~~~~~~~l~~L~~L~l~~N~  558 (606)
T 3t6q_A          527 YLNLASN-HISIILPSLLPILSQQRTINLRQNP  558 (606)
T ss_dssp             EEECCSS-CCCCCCGGGHHHHHTSSEEECTTCC
T ss_pred             EEECcCC-cccccCHhhcccCCCCCEEeCCCCC
Confidence            9999997 577776543  23789999998875

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=100.00  E-value=8e-32  Score=310.66  Aligned_cols=517  Identities=17%  Similarity=0.140  Sum_probs=277.6

Q ss_pred             hhhccCCCCcccEEEecCCCCCccC-cccCCCCcccEEecCCCCchhc-chhhhhcccccEEeecccccccccccc-ccC
Q 039689          189 VLQRLLNLPRLRVFSLRGYNIFELP-KAIENLKHLRFLDLSTTKIEIL-RESINTLYNLHTLLLEDCRRLKKLCKD-MGN  265 (763)
Q Consensus       189 ~~~~~~~l~~Lr~L~L~~~~i~~lp-~~~~~l~~L~~L~L~~~~i~~l-p~~~~~L~~L~~L~L~~~~~l~~lp~~-i~~  265 (763)
                      +|..+.  +++++|++++|.++.+| ..|+++++|++|+|++|.++.+ |..|+++++|++|++++ +.+..+|.. |++
T Consensus        19 ip~~~~--~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~-n~l~~l~~~~~~~   95 (680)
T 1ziw_A           19 VPDDLP--TNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQH-NELSQLSDKTFAF   95 (680)
T ss_dssp             CCSCSC--TTCSEEECCSSCCCCCCGGGGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCS-SCCCCCCTTTTTT
T ss_pred             cccccC--CCCcEEECCCCCCCCcCHHHHhCCCcCcEEECCCCccCccCHHHHhcccCcCEEECCC-CccCccChhhhcc
Confidence            344443  68999999999999986 5699999999999999999977 67899999999999999 478888874 999


Q ss_pred             cccccccccCCccccccccc--CCCccCCCceeeecCcccccCcccchhhhhcCcccccceEEeeccCCCCCCccHHHHh
Q 039689          266 LTKLHHLNNSNVGSLEEMLM--LKSLVHLQGTLEISRLENVKGVGDASEVQLNSKVNLKALYLQWGVRDAVEPKTETQVI  343 (763)
Q Consensus       266 L~~L~~L~l~~~~~l~~l~~--l~~L~~L~~~L~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l  343 (763)
                      +++|++|++++|. +..++.  +.++++|+ .+++.+..    ........+.++++|+.|++++|.......    ..+
T Consensus        96 l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~-~L~Ls~n~----l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~----~~~  165 (680)
T 1ziw_A           96 CTNLTELHLMSNS-IQKIKNNPFVKQKNLI-TLDLSHNG----LSSTKLGTQVQLENLQELLLSNNKIQALKS----EEL  165 (680)
T ss_dssp             CTTCSEEECCSSC-CCCCCSCTTTTCTTCC-EEECCSSC----CSCCCCCSSSCCTTCCEEECCSSCCCCBCH----HHH
T ss_pred             CCCCCEEECCCCc-cCccChhHccccCCCC-EEECCCCc----ccccCchhhcccccCCEEEccCCcccccCH----HHh
Confidence            9999999999998 777763  77888888 78776632    222333456778888888887764432211    111


Q ss_pred             hcCCCCCCc-eEEEeeeCCCCCC-CccCCCCCCCceEEEEeccCCCCC----CCCCCCCCCCCcceecccCCceEeCccc
Q 039689          344 DMLKPHQKL-ELTITGYGGTKFP-IWLGDSLFSKLMLLKFDNCGTCTS----LPSVGQLPFLKDPVISGMGRVKIVGSEF  417 (763)
Q Consensus       344 ~~l~~l~~L-~L~~~~~~~~~~p-~~~~~~~~~~L~~L~l~~~~~~~~----l~~l~~l~~L~~L~l~~~~~l~~~~~~~  417 (763)
                      .. ...+.| .|++.++....++ .++..  +++|+.|++.++.....    ++.....++|+.|+++++.........+
T Consensus       166 ~~-~~~~~L~~L~L~~n~l~~~~~~~~~~--l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~  242 (680)
T 1ziw_A          166 DI-FANSSLKKLELSSNQIKEFSPGCFHA--IGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTF  242 (680)
T ss_dssp             GG-GTTCEESEEECTTCCCCCBCTTGGGG--SSEECEEECTTCCCHHHHHHHHHHHHTTSCCCEEECTTSCCCEECTTTT
T ss_pred             hc-cccccccEEECCCCcccccChhhhhh--hhhhhhhhccccccChhhHHHHHHHhhhccccEEEccCCcccccChhHh
Confidence            11 112344 5555555444432 22322  34444444443321000    0000012344444444443322222221


Q ss_pred             cCCCcCCCCCCcceeeccccchhhhcCCC---CcCCcccEEEEecCcc---hhhcCCCCCcccEEEEecCCcccccCCCc
Q 039689          418 YGSSCSVSFPSLETLFFVDICSKLQGTLP---ERLLLLEKLNIFRCEQ---LLVTLQCLPALRELEIDGCKGVVLSSPTD  491 (763)
Q Consensus       418 ~~~~~~~~f~~L~~L~l~~~~~~l~~~~~---~~~~~L~~L~l~~~~~---l~~~l~~l~~L~~L~l~~~~~~~~~~~~~  491 (763)
                      .+    ...++|++|++.+  +.+.+..|   ..+++|++|++.+|..   .+..+..+++|++|++++|..........
T Consensus       243 ~~----l~~~~L~~L~Ls~--n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~  316 (680)
T 1ziw_A          243 LG----LKWTNLTMLDLSY--NNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLAS  316 (680)
T ss_dssp             GG----GGGSCCCEEECTT--SCCCEECTTTTTTCTTCCEEECCSCCBSEECTTTTTTCTTCCEEECTTCBCCC------
T ss_pred             hc----cCcCCCCEEECCC--CCcCccCcccccCcccccEeeCCCCccCccChhhhcCCCCccEEeccchhhhccccccc
Confidence            11    0012255555544  12221111   2334455555554431   11234445555555554432110000000


Q ss_pred             cccceeccccchhhhhhcCCCCCCceEEEeccCCccccccccCcCCccccccCceeeccCCc---------hh----hhc
Q 039689          492 LSSLKLVHSRDMAKEVFEQGLPKLERLEIQHVREQTYLWRSETRLPQDIRSLNRLQISRCPQ---------LI----SLL  558 (763)
Q Consensus       492 L~~L~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~p~~l~~L~~L~l~~~~~---------l~----~~L  558 (763)
                      +..         .....+..+++|++|++++|......    ...-..+++|+.|+++++..         ..    ..|
T Consensus       317 lp~---------i~~~~~~~l~~L~~L~l~~n~l~~~~----~~~~~~l~~L~~L~Ls~n~~~~~~l~~~~f~~~~~~~L  383 (680)
T 1ziw_A          317 LPK---------IDDFSFQWLKCLEHLNMEDNDIPGIK----SNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPL  383 (680)
T ss_dssp             CCE---------ECTTTTTTCTTCCEEECCSCCBCCCC----TTTTTTCTTCCEEECTTCBSCCCEECTTTTGGGTTSCC
T ss_pred             ccc---------cChhhcccCCCCCEEECCCCccCCCC----hhHhccccCCcEEECCCCchhhhhcchhhhcccccCcC
Confidence            000         00011233444444444444322100    00002233444444443310         00    015


Q ss_pred             ceeeeccCCCcccccchhhhcCCCCcceEEEecCccccccCC--CCCCCCccEEEEccCCCCCCCchhhhcCCCCCcceE
Q 039689          559 RTVKIEDCNALESLPEAWMHNSNSSLESLKIRSCNSLVSFPD--FALPSQLRTVTIKGCDALESLPEAWMQNSSTSLESL  636 (763)
Q Consensus       559 ~~L~l~~~~~l~~l~~~~~~~~l~~L~~L~l~~c~~l~~~~~--~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L  636 (763)
                      +.|++++|. +..+++..+. .+++|+.|++++|.....+|.  +..+++|++|++++|......+..+  ..+++|+.|
T Consensus       384 ~~L~L~~n~-l~~~~~~~~~-~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~--~~~~~L~~L  459 (680)
T 1ziw_A          384 HILNLTKNK-ISKIESDAFS-WLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSF--ALVPSLQRL  459 (680)
T ss_dssp             CEEECTTSC-CCEECTTTTT-TCTTCCEEECCSSCCEEECCSGGGTTCTTCCEEECCSCSEEECCTTTT--TTCTTCCEE
T ss_pred             ceEECCCCC-CCeEChhhhh-CCCCCCEEeCCCCcCccccCcccccCcccccEEecCCCCcceeChhhh--hcCcccccc
Confidence            555555533 3333222121 255666666655544333432  4455566666666654322223333  455566666


Q ss_pred             eeccCCCcc---ccccc-cCCCCCcEEEEecCCCC--------CCCccceEEecCCCCCccccC------------CCCC
Q 039689          637 AIDSCDSLT---YIARI-QLPPSLKRLIIFRCDNL--------RFNSLRKLKISGGCPDLVSSP------------RFPA  692 (763)
Q Consensus       637 ~l~~c~~l~---~l~~~-~~~~~L~~L~l~~c~~l--------~~~~L~~L~l~~~~~~l~~~~------------~~~~  692 (763)
                      ++++| .++   .+|.. .-.++|+.|++++|.--        .+++|+.|++++  +.+..++            ..++
T Consensus       460 ~l~~n-~l~~~~~~p~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~Ls~--N~l~~~~~~~~~~~~~~~~~~l~  536 (680)
T 1ziw_A          460 MLRRV-ALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQH--NNLARLWKHANPGGPIYFLKGLS  536 (680)
T ss_dssp             ECTTS-CCBCTTCSSCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS--SCCGGGGSTTSTTSCCCTTTTCT
T ss_pred             hhccc-cccccccCCcccccCCCCCEEECCCCCCCcCChhhhccccccCEEeCCC--CCccccchhhccCCcchhhcCCC
Confidence            66655 222   11111 11345556655554311        356677777776  3444331            2467


Q ss_pred             CcCeEeeccCCCCccccCC-CCCCCCcCceecccCCCCccccCCC--cccccceeeeccC
Q 039689          693 SLTELKISDMPSLERLSSI-GENLTSLKFLDLDNCPKLKYFSKQG--LPKSLLRLIIDEC  749 (763)
Q Consensus       693 ~L~~L~l~~~~~l~~ip~~-~~~l~~L~~L~l~~c~~L~~l~~~~--~~~~L~~L~i~~C  749 (763)
                      +|++|++++ +.++.+|.. +..+++|++|+++++ +++.++...  ..++|+.|++++|
T Consensus       537 ~L~~L~L~~-N~l~~i~~~~~~~l~~L~~L~Ls~N-~l~~l~~~~~~~l~~L~~L~L~~N  594 (680)
T 1ziw_A          537 HLHILNLES-NGFDEIPVEVFKDLFELKIIDLGLN-NLNTLPASVFNNQVSLKSLNLQKN  594 (680)
T ss_dssp             TCCEEECCS-SCCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECTTS
T ss_pred             CCCEEECCC-CCCCCCCHHHcccccCcceeECCCC-CCCcCCHhHhCCCCCCCEEECCCC
Confidence            999999999 588899875 589999999999885 789998753  3479999999998

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=99.98  E-value=9.1e-31  Score=294.08  Aligned_cols=449  Identities=19%  Similarity=0.203  Sum_probs=241.2

Q ss_pred             CcccEEEecCCCCCcc-CcccCCCCcccEEecCCCCchhcc-hhhhhcccccEEeecccccccccccc-ccCcccccccc
Q 039689          197 PRLRVFSLRGYNIFEL-PKAIENLKHLRFLDLSTTKIEILR-ESINTLYNLHTLLLEDCRRLKKLCKD-MGNLTKLHHLN  273 (763)
Q Consensus       197 ~~Lr~L~L~~~~i~~l-p~~~~~l~~L~~L~L~~~~i~~lp-~~~~~L~~L~~L~L~~~~~l~~lp~~-i~~L~~L~~L~  273 (763)
                      +.|++|++++|.++.+ |..|..+++|++|+|++|.++.++ ..|+++++|++|++++| .+..+|+. ++++++|++|+
T Consensus        26 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~  104 (549)
T 2z81_A           26 AAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDN-HLSSLSSSWFGPLSSLKYLN  104 (549)
T ss_dssp             TTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTS-CCCSCCHHHHTTCTTCCEEE
T ss_pred             CCccEEECcCCccCccChhhhhcCCcccEEECCCCCcCccChhhccccccCCEEECCCC-ccCccCHHHhccCCCCcEEE
Confidence            6899999999999887 578999999999999999999875 67899999999999995 66666655 99999999999


Q ss_pred             cCCcccccccc---cCCCccCCCceeeecCcccccCcccchhhhhcCcccccceEEeeccCCCCCCccHHHHhhcCCCCC
Q 039689          274 NSNVGSLEEML---MLKSLVHLQGTLEISRLENVKGVGDASEVQLNSKVNLKALYLQWGVRDAVEPKTETQVIDMLKPHQ  350 (763)
Q Consensus       274 l~~~~~l~~l~---~l~~L~~L~~~L~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~l~~l~  350 (763)
                      +++|. +..++   .++++++|+ .|.+.+....   .......+.++++|+.|++++|                     
T Consensus       105 Ls~n~-l~~~~~~~~~~~l~~L~-~L~L~~n~~~---~~~~~~~~~~l~~L~~L~L~~n---------------------  158 (549)
T 2z81_A          105 LMGNP-YQTLGVTSLFPNLTNLQ-TLRIGNVETF---SEIRRIDFAGLTSLNELEIKAL---------------------  158 (549)
T ss_dssp             CTTCC-CSSSCSSCSCTTCTTCC-EEEEEESSSC---CEECTTTTTTCCEEEEEEEEET---------------------
T ss_pred             CCCCc-ccccchhhhhhccCCcc-EEECCCCccc---cccCHhhhhcccccCeeeccCC---------------------
Confidence            99997 54331   234444444 3433332111   1111122333333333333332                     


Q ss_pred             CceEEEeeeCCCC-CCCccCCCCCCCceEEEEeccCCCCCCC--CCCCCCCCCcceecccCCceEeCccccCCCcCCCCC
Q 039689          351 KLELTITGYGGTK-FPIWLGDSLFSKLMLLKFDNCGTCTSLP--SVGQLPFLKDPVISGMGRVKIVGSEFYGSSCSVSFP  427 (763)
Q Consensus       351 ~L~L~~~~~~~~~-~p~~~~~~~~~~L~~L~l~~~~~~~~l~--~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~f~  427 (763)
                               .... .|.++..  +++|+.|++++|... .++  .++.+++|++|+++++......   +..        
T Consensus       159 ---------~l~~~~~~~l~~--l~~L~~L~l~~n~~~-~~~~~~~~~l~~L~~L~L~~n~l~~~~---~~~--------  215 (549)
T 2z81_A          159 ---------SLRNYQSQSLKS--IRDIHHLTLHLSESA-FLLEIFADILSSVRYLELRDTNLARFQ---FSP--------  215 (549)
T ss_dssp             ---------TCCEECTTTTTT--CSEEEEEEEECSBST-THHHHHHHSTTTBSEEEEESCBCTTCC---CCC--------
T ss_pred             ---------cccccChhhhhc--cccCceEecccCccc-ccchhhHhhcccccEEEccCCcccccc---ccc--------
Confidence                     1111 2333433  455555555555321 122  1223445555555543321110   000        


Q ss_pred             CcceeeccccchhhhcCCCCcCCcccEEEEecCcc-------hhhcCCCCCcccEEEEecCCcccccCCCccccceeccc
Q 039689          428 SLETLFFVDICSKLQGTLPERLLLLEKLNIFRCEQ-------LLVTLQCLPALRELEIDGCKGVVLSSPTDLSSLKLVHS  500 (763)
Q Consensus       428 ~L~~L~l~~~~~~l~~~~~~~~~~L~~L~l~~~~~-------l~~~l~~l~~L~~L~l~~~~~~~~~~~~~L~~L~~~~~  500 (763)
                                     ..+...+++|+.|++.++..       +...+..+++|+.+++++|.......+...        
T Consensus       216 ---------------~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~L~~l~l~~~~~~~~~~~~~~--------  272 (549)
T 2z81_A          216 ---------------LPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDCTLNGLGDFNPS--------  272 (549)
T ss_dssp             ---------------CSSCCCCCCCCEEEEESCEEEHHHHHHHHGGGGGCTTCCEEEEESCEEECCSCCCCC--------
T ss_pred             ---------------cchhhhhhcccceeccccccchhHHHHHHHHhhhhcccccccccccccccccccccc--------
Confidence                           01112344555555555431       111233455666666665543222111000        


Q ss_pred             cchhhhhhcCCCCCCceEEEeccCCccccccccCcCC---ccccccCceeeccCCchhhhcceeeeccCCCcccccchhh
Q 039689          501 RDMAKEVFEQGLPKLERLEIQHVREQTYLWRSETRLP---QDIRSLNRLQISRCPQLISLLRTVKIEDCNALESLPEAWM  577 (763)
Q Consensus       501 ~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~p---~~l~~L~~L~l~~~~~l~~~L~~L~l~~~~~l~~l~~~~~  577 (763)
                          .......+++|+.|.+.++........  ..++   ...++               |+.|++++ +.++.+|..++
T Consensus       273 ----~~~~~~~l~~L~~L~l~~~~i~~~~~~--~~l~~~~~~~~~---------------L~~L~l~~-n~l~~ip~~~~  330 (549)
T 2z81_A          273 ----ESDVVSELGKVETVTIRRLHIPQFYLF--YDLSTVYSLLEK---------------VKRITVEN-SKVFLVPCSFS  330 (549)
T ss_dssp             ----TTTCCCCCTTCCEEEEESCBCSCGGGS--CCCCHHHHHSTT---------------CCEEEEES-SCCCCCCHHHH
T ss_pred             ----chhhhhhhcccccccccccccchhhhc--ccchhhhhhccc---------------ceEEEecc-CccccCCHHHH
Confidence                000113345555555555432211000  0000   01112               33444444 33555555432


Q ss_pred             hcCCCCcceEEEecCccccccC----CCCCCCCccEEEEccCCCCCCCch---hhhcCCCCCcceEeeccCCCccccccc
Q 039689          578 HNSNSSLESLKIRSCNSLVSFP----DFALPSQLRTVTIKGCDALESLPE---AWMQNSSTSLESLAIDSCDSLTYIARI  650 (763)
Q Consensus       578 ~~~l~~L~~L~l~~c~~l~~~~----~~~~~~~L~~L~l~~~~~l~~~~~---~~~~~~l~~L~~L~l~~c~~l~~l~~~  650 (763)
                      . .+++|++|++++|.....+|    .+..+++|++|++++| .++.++.   .+  ..+++|+.|++++| .++.+|..
T Consensus       331 ~-~l~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~--~~l~~L~~L~Ls~N-~l~~lp~~  405 (549)
T 2z81_A          331 Q-HLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQN-HLRSMQKTGEIL--LTLKNLTSLDISRN-TFHPMPDS  405 (549)
T ss_dssp             H-HCTTCCEEECCSSCCCHHHHHHHTCTTSSTTCCEEECTTS-CCCCHHHHHHHG--GGCTTCCEEECTTC-CCCCCCSC
T ss_pred             h-cCccccEEEccCCccccccccchhhhhccccCcEEEccCC-cccccccchhhh--hcCCCCCEEECCCC-CCccCChh
Confidence            2 25566666665554333221    1344455666666665 3344332   12  45566666666655 44444432


Q ss_pred             c-CCCCCcEEEEecCCCC-----CCCccceEEecCCCCCccccCCCCCCcCeEeeccCCCCccccCCCCCCCCcCceecc
Q 039689          651 Q-LPPSLKRLIIFRCDNL-----RFNSLRKLKISGGCPDLVSSPRFPASLTELKISDMPSLERLSSIGENLTSLKFLDLD  724 (763)
Q Consensus       651 ~-~~~~L~~L~l~~c~~l-----~~~~L~~L~l~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~ip~~~~~l~~L~~L~l~  724 (763)
                      . .+++|+.|++++|.--     ...+|+.|++++  +.+..++..+++|++|++++ +.++.+|. ...+++|++|+++
T Consensus       406 ~~~~~~L~~L~Ls~N~l~~l~~~~~~~L~~L~Ls~--N~l~~~~~~l~~L~~L~Ls~-N~l~~ip~-~~~l~~L~~L~Ls  481 (549)
T 2z81_A          406 CQWPEKMRFLNLSSTGIRVVKTCIPQTLEVLDVSN--NNLDSFSLFLPRLQELYISR-NKLKTLPD-ASLFPVLLVMKIS  481 (549)
T ss_dssp             CCCCTTCCEEECTTSCCSCCCTTSCTTCSEEECCS--SCCSCCCCCCTTCCEEECCS-SCCSSCCC-GGGCTTCCEEECC
T ss_pred             hcccccccEEECCCCCcccccchhcCCceEEECCC--CChhhhcccCChhcEEECCC-CccCcCCC-cccCccCCEEecC
Confidence            1 2445666666555421     124677777775  45666666778899999998 47788885 5678899999999


Q ss_pred             cCCCCccccCC--CcccccceeeeccCh
Q 039689          725 NCPKLKYFSKQ--GLPKSLLRLIIDECP  750 (763)
Q Consensus       725 ~c~~L~~l~~~--~~~~~L~~L~i~~C~  750 (763)
                      +| +++.++..  ...++|+.|++++||
T Consensus       482 ~N-~l~~~~~~~~~~l~~L~~L~l~~N~  508 (549)
T 2z81_A          482 RN-QLKSVPDGIFDRLTSLQKIWLHTNP  508 (549)
T ss_dssp             SS-CCCCCCTTGGGGCTTCCEEECCSSC
T ss_pred             CC-ccCCcCHHHHhcCcccCEEEecCCC
Confidence            86 67777664  234789999987765

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=99.98  E-value=3.7e-31  Score=300.98  Aligned_cols=469  Identities=13%  Similarity=0.136  Sum_probs=302.2

Q ss_pred             hhhhhhccCCCCcccEEEecCCCCCcc-CcccCCCCcccEEecCCCCchhc-chhhhhcccccEEeeccccccccc-ccc
Q 039689          186 RQNVLQRLLNLPRLRVFSLRGYNIFEL-PKAIENLKHLRFLDLSTTKIEIL-RESINTLYNLHTLLLEDCRRLKKL-CKD  262 (763)
Q Consensus       186 ~~~~~~~~~~l~~Lr~L~L~~~~i~~l-p~~~~~l~~L~~L~L~~~~i~~l-p~~~~~L~~L~~L~L~~~~~l~~l-p~~  262 (763)
                      ....+.+|.++++|++|++++|.+..+ |..|+++++|++|+|++|.++.+ |..|+++++|++|++++| .+..+ |..
T Consensus        46 ~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n-~i~~l~~~~  124 (606)
T 3t6q_A           46 PTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLFFIQT-GISSIDFIP  124 (606)
T ss_dssp             SEECTTTSTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCSEECTTTTSSCTTCCEEECTTS-CCSCGGGSC
T ss_pred             CcCChhHhccCccceEEECCCCccceeChhhccCccccCeeeCCCCcccccChhhhcccccccEeecccc-CcccCCcch
Confidence            333567789999999999999999887 78899999999999999999877 778999999999999995 56666 667


Q ss_pred             ccCcccccccccCCccccccc--ccCCCccCCCceeeecCcccccCcccchhhhhcCccccc--ceEEeeccCCCCCCc-
Q 039689          263 MGNLTKLHHLNNSNVGSLEEM--LMLKSLVHLQGTLEISRLENVKGVGDASEVQLNSKVNLK--ALYLQWGVRDAVEPK-  337 (763)
Q Consensus       263 i~~L~~L~~L~l~~~~~l~~l--~~l~~L~~L~~~L~~~~~~~~~~~~~~~~~~l~~l~~L~--~L~l~~~~~~~~~~~-  337 (763)
                      ++++++|++|++++|. +..+  |....+++|+ .+++.+.    .+.......+..+++|+  .|++++|......+. 
T Consensus       125 ~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~-~L~L~~n----~l~~~~~~~~~~l~~L~~l~L~l~~n~l~~~~~~~  198 (606)
T 3t6q_A          125 LHNQKTLESLYLGSNH-ISSIKLPKGFPTEKLK-VLDFQNN----AIHYLSKEDMSSLQQATNLSLNLNGNDIAGIEPGA  198 (606)
T ss_dssp             CTTCTTCCEEECCSSC-CCCCCCCTTCCCTTCC-EEECCSS----CCCEECHHHHHTTTTCCSEEEECTTCCCCEECTTT
T ss_pred             hccCCcccEEECCCCc-ccccCcccccCCcccC-EEEcccC----cccccChhhhhhhcccceeEEecCCCccCccChhH
Confidence            9999999999999998 7665  6666688888 8887653    33444556677888888  566666543322111 


Q ss_pred             ---------------cHHHHhhcCCCCCCceEEEeeeCC---CCCCC-ccCCCCCCCceEEEEeccCCCCCCC-CCCCCC
Q 039689          338 ---------------TETQVIDMLKPHQKLELTITGYGG---TKFPI-WLGDSLFSKLMLLKFDNCGTCTSLP-SVGQLP  397 (763)
Q Consensus       338 ---------------~~~~~l~~l~~l~~L~L~~~~~~~---~~~p~-~~~~~~~~~L~~L~l~~~~~~~~l~-~l~~l~  397 (763)
                                     .....+..+.......+.+.....   ..++. .+....-.+++.|++++|......+ .++.++
T Consensus       199 ~~~~~L~~L~l~~~~~~~~~~~~l~~~~l~~l~~~~~~~~~~~~i~~~~~~~l~~~~L~~L~l~~n~l~~~~~~~~~~l~  278 (606)
T 3t6q_A          199 FDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFFNISSNTFHCFS  278 (606)
T ss_dssp             TTTCEEEEEECTTCSCHHHHHHHTTTCEEEEEECCCCTTSCCCCCCGGGGGGGGGSEEEEEECTTCCCSSCCTTTTTTCT
T ss_pred             hhhccccccccCCchhHHHHhhhccccchhheechhhccccccccChhHhchhhcCceeEEEeecCccCccCHHHhcccc
Confidence                           011111222211111222221111   11111 1111001278999999986544333 488999


Q ss_pred             CCCcceecccCCceEeCccccCCCcCCCCCCcceeeccccchhhhcCCC---CcCCcccEEEEecCcch----hhcCCCC
Q 039689          398 FLKDPVISGMGRVKIVGSEFYGSSCSVSFPSLETLFFVDICSKLQGTLP---ERLLLLEKLNIFRCEQL----LVTLQCL  470 (763)
Q Consensus       398 ~L~~L~l~~~~~l~~~~~~~~~~~~~~~f~~L~~L~l~~~~~~l~~~~~---~~~~~L~~L~l~~~~~l----~~~l~~l  470 (763)
                      +|++|+++++... .++..+      ..+++|++|++.+  +.+.+..|   ..+++|++|++.+|...    ...+..+
T Consensus       279 ~L~~L~l~~n~l~-~lp~~l------~~l~~L~~L~l~~--n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l  349 (606)
T 3t6q_A          279 GLQELDLTATHLS-ELPSGL------VGLSTLKKLVLSA--NKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENL  349 (606)
T ss_dssp             TCSEEECTTSCCS-CCCSSC------CSCTTCCEEECTT--CCCSBGGGGCGGGCTTCSEEECCSCSSCCBCCSSTTTTC
T ss_pred             CCCEEeccCCccC-CCChhh------cccccCCEEECcc--CCcCcCchhhhhccCcCCEEECCCCCcccccchhhhhcc
Confidence            9999999997543 343333      3478999999987  33333222   46789999999998633    2247789


Q ss_pred             CcccEEEEecCCcccccCCCccccceeccccchhhhhhcCCCCCCceEEEeccCCccccccccCcCCccccccCceeecc
Q 039689          471 PALRELEIDGCKGVVLSSPTDLSSLKLVHSRDMAKEVFEQGLPKLERLEIQHVREQTYLWRSETRLPQDIRSLNRLQISR  550 (763)
Q Consensus       471 ~~L~~L~l~~~~~~~~~~~~~L~~L~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~p~~l~~L~~L~l~~  550 (763)
                      ++|++|++++|........                ...+..+++|++|++++|....       ..|..+..+..     
T Consensus       350 ~~L~~L~l~~n~l~~~~~~----------------~~~~~~l~~L~~L~l~~n~l~~-------~~~~~~~~l~~-----  401 (606)
T 3t6q_A          350 ENLRELDLSHDDIETSDCC----------------NLQLRNLSHLQSLNLSYNEPLS-------LKTEAFKECPQ-----  401 (606)
T ss_dssp             TTCCEEECCSSCCCEEEES----------------TTTTTTCTTCCEEECCSCSCEE-------ECTTTTTTCTT-----
T ss_pred             CcCCEEECCCCccccccCc----------------chhcccCCCCCEEECCCCcCCc-------CCHHHhcCCcc-----
Confidence            9999999999875543210                1123667889999999887543       22322222211     


Q ss_pred             CCchhhhcceeeeccCCCcccc-cchhhhcCCCCcceEEEecCccccccCC-CCCCCCccEEEEccCCCCCC-Cc--hhh
Q 039689          551 CPQLISLLRTVKIEDCNALESL-PEAWMHNSNSSLESLKIRSCNSLVSFPD-FALPSQLRTVTIKGCDALES-LP--EAW  625 (763)
Q Consensus       551 ~~~l~~~L~~L~l~~~~~l~~l-~~~~~~~~l~~L~~L~l~~c~~l~~~~~-~~~~~~L~~L~l~~~~~l~~-~~--~~~  625 (763)
                             |+.|++++ +.+... +...+ ..+++|++|++++|......|. +..+++|++|++++|...+. ++  ..+
T Consensus       402 -------L~~L~l~~-n~l~~~~~~~~~-~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~  472 (606)
T 3t6q_A          402 -------LELLDLAF-TRLKVKDAQSPF-QNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSL  472 (606)
T ss_dssp             -------CSEEECTT-CCEECCTTCCTT-TTCTTCCEEECTTCCCBTTCTTTTTTCTTCCEEECTTCBCGGGEECSSCGG
T ss_pred             -------CCeEECCC-CcCCCcccchhh-hCcccCCEEECCCCccCCcCHHHHhCCCCCCEEECCCCCCCccccccchhh
Confidence                   44444444 334333 33312 3478889999988765444443 56778899999988855431 12  234


Q ss_pred             hcCCCCCcceEeeccCCCccccccccCCCCCcEEEEecCCCCCCCccceEEecCCCCCccccC-C---CCCCcCeEeecc
Q 039689          626 MQNSSTSLESLAIDSCDSLTYIARIQLPPSLKRLIIFRCDNLRFNSLRKLKISGGCPDLVSSP-R---FPASLTELKISD  701 (763)
Q Consensus       626 ~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~L~~L~l~~c~~l~~~~L~~L~l~~~~~~l~~~~-~---~~~~L~~L~l~~  701 (763)
                        ..+++|+.|++++| .++.++...+.              .+++|+.|++++  +.+...+ .   .+++| +|++++
T Consensus       473 --~~l~~L~~L~Ls~n-~l~~~~~~~~~--------------~l~~L~~L~Ls~--N~l~~~~~~~l~~l~~L-~L~L~~  532 (606)
T 3t6q_A          473 --QTLGRLEILVLSFC-DLSSIDQHAFT--------------SLKMMNHVDLSH--NRLTSSSIEALSHLKGI-YLNLAS  532 (606)
T ss_dssp             --GGCTTCCEEECTTS-CCCEECTTTTT--------------TCTTCCEEECCS--SCCCGGGGGGGTTCCSC-EEECCS
T ss_pred             --ccCCCccEEECCCC-ccCccChhhhc--------------cccCCCEEECCC--CccCcCChhHhCccccc-EEECcC
Confidence              67888999999988 66665444332              234555555554  2333222 1   45677 888888


Q ss_pred             CCCCccccC-CCCCCCCcCceecccCCC
Q 039689          702 MPSLERLSS-IGENLTSLKFLDLDNCPK  728 (763)
Q Consensus       702 ~~~l~~ip~-~~~~l~~L~~L~l~~c~~  728 (763)
                      | .++.++. .+..+++|++|++++||-
T Consensus       533 N-~l~~~~~~~~~~l~~L~~L~l~~N~~  559 (606)
T 3t6q_A          533 N-HISIILPSLLPILSQQRTINLRQNPL  559 (606)
T ss_dssp             S-CCCCCCGGGHHHHHTSSEEECTTCCE
T ss_pred             C-cccccCHhhcccCCCCCEEeCCCCCc
Confidence            5 5555543 347788999999999864

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=99.97  E-value=3.3e-31  Score=301.38  Aligned_cols=464  Identities=18%  Similarity=0.210  Sum_probs=253.0

Q ss_pred             hhhccCCCCcccEEEecCCCCCcc-CcccCCCCcccEEecCCCCchhc-chhhhhcccccEEeecccccccccc-ccccC
Q 039689          189 VLQRLLNLPRLRVFSLRGYNIFEL-PKAIENLKHLRFLDLSTTKIEIL-RESINTLYNLHTLLLEDCRRLKKLC-KDMGN  265 (763)
Q Consensus       189 ~~~~~~~l~~Lr~L~L~~~~i~~l-p~~~~~l~~L~~L~L~~~~i~~l-p~~~~~L~~L~~L~L~~~~~l~~lp-~~i~~  265 (763)
                      .+..|.++++|++|++++|.++.+ |..|+++++|++|+|++|.++.+ |..|+++++|++|++++| .+..+| ..+++
T Consensus        48 ~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~  126 (606)
T 3vq2_A           48 KSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVET-KLASLESFPIGQ  126 (606)
T ss_dssp             CTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCCCCTTSSTTCTTCCEEECTTS-CCCCSSSSCCTT
T ss_pred             ChhhccCCccCcEEeCCCCcccccCHHHhhchhhcCEeECCCCcccccChhhcCCcccCCEEEccCC-ccccccccccCC
Confidence            444677888888888888888877 56788888888888888888877 777888888888888884 555555 55888


Q ss_pred             cccccccccCCcccccc--ccc-CCCccCCCceeeecCcccccCcccchhhhhcCccccc----ceEEeeccCCCCCC--
Q 039689          266 LTKLHHLNNSNVGSLEE--MLM-LKSLVHLQGTLEISRLENVKGVGDASEVQLNSKVNLK----ALYLQWGVRDAVEP--  336 (763)
Q Consensus       266 L~~L~~L~l~~~~~l~~--l~~-l~~L~~L~~~L~~~~~~~~~~~~~~~~~~l~~l~~L~----~L~l~~~~~~~~~~--  336 (763)
                      +++|++|++++|. +..  +|. ++++++|+ .|.+.+..    +.......+..+++|+    .|++++|.......  
T Consensus       127 l~~L~~L~L~~n~-l~~~~lp~~~~~l~~L~-~L~Ls~n~----l~~~~~~~~~~l~~L~~~l~~L~l~~n~l~~~~~~~  200 (606)
T 3vq2_A          127 LITLKKLNVAHNF-IHSCKLPAYFSNLTNLV-HVDLSYNY----IQTITVNDLQFLRENPQVNLSLDMSLNPIDFIQDQA  200 (606)
T ss_dssp             CTTCCEEECCSSC-CCCCCCCGGGGTCTTCC-EEECCSSC----CCEECTTTTHHHHHCTTCCCEEECTTCCCCEECTTT
T ss_pred             CCCCCEEeCCCCc-ccceechHhHhhcCCCC-EEEccCCc----ceecChhhhhhhhccccccceeeccCCCcceeCccc
Confidence            8888888888887 543  443 67777777 67665531    1122222233333222    34444332211110  


Q ss_pred             ------------------ccHHHHhhcCCCCCCceEEEeeeCCCC----CC-CccCCCCCCCceEEEEe-ccCCCCCCCC
Q 039689          337 ------------------KTETQVIDMLKPHQKLELTITGYGGTK----FP-IWLGDSLFSKLMLLKFD-NCGTCTSLPS  392 (763)
Q Consensus       337 ------------------~~~~~~l~~l~~l~~L~L~~~~~~~~~----~p-~~~~~~~~~~L~~L~l~-~~~~~~~l~~  392 (763)
                                        ......+..+..++.+.+.........    ++ .++....--.++.+++. .+...+.++.
T Consensus       201 ~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~  280 (606)
T 3vq2_A          201 FQGIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVK  280 (606)
T ss_dssp             TTTCEEEEEEEESCCSCHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCGGGGTTGGGSEEEEEEECCCTTCCGGGGS
T ss_pred             ccCceeeeeeccCCccchhHHHHHhccccccccccccccccccCCcccccChHHhhhhhhccHhheeccccccccccccc
Confidence                              011112222222222222222211110    00 00000000133444442 2222333444


Q ss_pred             CCCCCCCCcceecccCCceEeCccccCCCcCCCCCCcceeeccccchhhhcCCCC-cCCcccEEEEecCcch-hhcCCCC
Q 039689          393 VGQLPFLKDPVISGMGRVKIVGSEFYGSSCSVSFPSLETLFFVDICSKLQGTLPE-RLLLLEKLNIFRCEQL-LVTLQCL  470 (763)
Q Consensus       393 l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~f~~L~~L~l~~~~~~l~~~~~~-~~~~L~~L~l~~~~~l-~~~l~~l  470 (763)
                      +..+++|+.|+++++.... ++ .      ...+++|++|++.++  .+ +.+|. .+++|++|++.+|... ...+..+
T Consensus       281 ~~~l~~L~~L~l~~~~~~~-l~-~------l~~~~~L~~L~l~~n--~l-~~lp~~~l~~L~~L~l~~n~~~~~~~~~~l  349 (606)
T 3vq2_A          281 FHCLANVSAMSLAGVSIKY-LE-D------VPKHFKWQSLSIIRC--QL-KQFPTLDLPFLKSLTLTMNKGSISFKKVAL  349 (606)
T ss_dssp             CGGGTTCSEEEEESCCCCC-CC-C------CCTTCCCSEEEEESC--CC-SSCCCCCCSSCCEEEEESCSSCEECCCCCC
T ss_pred             cccCCCCCEEEecCccchh-hh-h------ccccccCCEEEcccc--cC-cccccCCCCccceeeccCCcCccchhhccC
Confidence            5566666666666644321 11 1      123556666666651  22 22332 4556666666666322 1234456


Q ss_pred             CcccEEEEecCCcccccCCCccccceeccccchhhhhhcCCCCCCceEEEeccCCccccccccCcCCccccccCceeecc
Q 039689          471 PALRELEIDGCKGVVLSSPTDLSSLKLVHSRDMAKEVFEQGLPKLERLEIQHVREQTYLWRSETRLPQDIRSLNRLQISR  550 (763)
Q Consensus       471 ~~L~~L~l~~~~~~~~~~~~~L~~L~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~p~~l~~L~~L~l~~  550 (763)
                      ++|++|++++|.......                ....+..+++|++|++++|....        +|..+..+..     
T Consensus       350 ~~L~~L~ls~n~l~~~~~----------------~~~~~~~~~~L~~L~L~~n~l~~--------~~~~~~~l~~-----  400 (606)
T 3vq2_A          350 PSLSYLDLSRNALSFSGC----------------CSYSDLGTNSLRHLDLSFNGAII--------MSANFMGLEE-----  400 (606)
T ss_dssp             TTCCEEECCSSCEEEEEE----------------CCHHHHCCSCCCEEECCSCSEEE--------ECCCCTTCTT-----
T ss_pred             CCCCEEECcCCccCCCcc----------------hhhhhccCCcccEeECCCCcccc--------chhhccCCCC-----
Confidence            666666666654332110                02233567888888888887332        2222222211     


Q ss_pred             CCchhhhcceeeeccCCCcccccc-hhhhcCCCCcceEEEecCccccccCC-CCCCCCccEEEEccCCCCCC-Cchhhhc
Q 039689          551 CPQLISLLRTVKIEDCNALESLPE-AWMHNSNSSLESLKIRSCNSLVSFPD-FALPSQLRTVTIKGCDALES-LPEAWMQ  627 (763)
Q Consensus       551 ~~~l~~~L~~L~l~~~~~l~~l~~-~~~~~~l~~L~~L~l~~c~~l~~~~~-~~~~~~L~~L~l~~~~~l~~-~~~~~~~  627 (763)
                             |+.|++++ +.+..+++ ..+ ..+++|++|++++|......|. +..+++|++|++++|...+. +|..+  
T Consensus       401 -------L~~L~l~~-n~l~~~~~~~~~-~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~--  469 (606)
T 3vq2_A          401 -------LQHLDFQH-STLKRVTEFSAF-LSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVF--  469 (606)
T ss_dssp             -------CCEEECTT-SEEESTTTTTTT-TTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCC--
T ss_pred             -------CCeeECCC-CccCCccChhhh-hccccCCEEECcCCCCCccchhhhcCCCCCCEEECCCCcCCCcchHHhh--
Confidence                   44444444 33444433 212 2378888888877765554554 56677888888888754442 45555  


Q ss_pred             CCCCCcceEeeccCCCccccccccCCCCCcEEEEecCCCCCCCccceEEecCCCCCcccc-CC---CCCCcCeEeeccCC
Q 039689          628 NSSTSLESLAIDSCDSLTYIARIQLPPSLKRLIIFRCDNLRFNSLRKLKISGGCPDLVSS-PR---FPASLTELKISDMP  703 (763)
Q Consensus       628 ~~l~~L~~L~l~~c~~l~~l~~~~~~~~L~~L~l~~c~~l~~~~L~~L~l~~~~~~l~~~-~~---~~~~L~~L~l~~~~  703 (763)
                      ..+++|+.|++++| .++.++...+.              .+++|+.|++++  +.+..+ |.   .+++|++|++++ +
T Consensus       470 ~~l~~L~~L~Ls~n-~l~~~~~~~~~--------------~l~~L~~L~Ls~--N~l~~~~~~~~~~l~~L~~L~l~~-N  531 (606)
T 3vq2_A          470 ANTTNLTFLDLSKC-QLEQISWGVFD--------------TLHRLQLLNMSH--NNLLFLDSSHYNQLYSLSTLDCSF-N  531 (606)
T ss_dssp             TTCTTCCEEECTTS-CCCEECTTTTT--------------TCTTCCEEECCS--SCCSCEEGGGTTTCTTCCEEECTT-S
T ss_pred             ccCCCCCEEECCCC-cCCccChhhhc--------------ccccCCEEECCC--CcCCCcCHHHccCCCcCCEEECCC-C
Confidence            67788888888887 55555433331              234455555554  223222 22   456788888888 4


Q ss_pred             CCccccCCCCCCC-CcCceecccCCC
Q 039689          704 SLERLSSIGENLT-SLKFLDLDNCPK  728 (763)
Q Consensus       704 ~l~~ip~~~~~l~-~L~~L~l~~c~~  728 (763)
                      .++.+|..+..++ +|++|++++||-
T Consensus       532 ~l~~~p~~~~~l~~~L~~l~l~~N~~  557 (606)
T 3vq2_A          532 RIETSKGILQHFPKSLAFFNLTNNSV  557 (606)
T ss_dssp             CCCCEESCGGGSCTTCCEEECCSCCC
T ss_pred             cCcccCHhHhhhcccCcEEEccCCCc
Confidence            5778887777776 588888888654

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=99.97  E-value=2.1e-30  Score=304.44  Aligned_cols=464  Identities=16%  Similarity=0.121  Sum_probs=265.9

Q ss_pred             CCcccEEEecCCCCCcc-CcccCCCCcccEEecCCCC-chhc-chhhhhcccccEEeeccccccccccccccCccccccc
Q 039689          196 LPRLRVFSLRGYNIFEL-PKAIENLKHLRFLDLSTTK-IEIL-RESINTLYNLHTLLLEDCRRLKKLCKDMGNLTKLHHL  272 (763)
Q Consensus       196 l~~Lr~L~L~~~~i~~l-p~~~~~l~~L~~L~L~~~~-i~~l-p~~~~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L  272 (763)
                      .+++++|+|++|.++.+ |..|.++++|++|+|++|. +..+ |.+|+++++|++|+|++|......|..|+++++|++|
T Consensus        23 p~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L  102 (844)
T 3j0a_A           23 LNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFEL  102 (844)
T ss_dssp             CTTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECTTSSCSCSSCCCE
T ss_pred             CCCcCEEECCCCcCCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccCHhHccCCcccCEe
Confidence            46778888888887776 5778888888888888873 4455 6677888888888888854333346678888888888


Q ss_pred             ccCCcccccc-ccc---CCCccCCCceeeecCcccccCcccc-hhhhhcCcccccceEEeeccCCCCCCccHHHHhhcCC
Q 039689          273 NNSNVGSLEE-MLM---LKSLVHLQGTLEISRLENVKGVGDA-SEVQLNSKVNLKALYLQWGVRDAVEPKTETQVIDMLK  347 (763)
Q Consensus       273 ~l~~~~~l~~-l~~---l~~L~~L~~~L~~~~~~~~~~~~~~-~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~l~  347 (763)
                      ++++|. +.. ++.   +.++++|+ .|+++...-    ... ....+.++++|+.|+++.|.........-. .+.. .
T Consensus       103 ~Ls~n~-l~~~~~~~~~~~~L~~L~-~L~Ls~N~l----~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~-~l~~-~  174 (844)
T 3j0a_A          103 RLYFCG-LSDAVLKDGYFRNLKALT-RLDLSKNQI----RSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELE-PLQG-K  174 (844)
T ss_dssp             ECTTCC-CSSCCSTTCCCSSCSSCC-EEEEESCCC----CCCCCCGGGGTCSSCCEEEEESSCCCCCCSGGGH-HHHH-C
T ss_pred             eCcCCC-CCcccccCccccccCCCC-EEECCCCcc----cccccchhHhhCCCCCEEECCCCcCCeeCHHHcc-cccC-C
Confidence            888876 443 332   66777777 777665321    111 223567778888888877755443322111 1110 2


Q ss_pred             CCCCceEEEeeeCCCC-CCCccCCC----CCCCceEEEEeccCCCCCCC-------------------------------
Q 039689          348 PHQKLELTITGYGGTK-FPIWLGDS----LFSKLMLLKFDNCGTCTSLP-------------------------------  391 (763)
Q Consensus       348 ~l~~L~L~~~~~~~~~-~p~~~~~~----~~~~L~~L~l~~~~~~~~l~-------------------------------  391 (763)
                      .++  .|.+.++.... .|..+...    ...+|+.|++++|......+                               
T Consensus       175 ~L~--~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~~~~~~l  252 (844)
T 3j0a_A          175 TLS--FFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNI  252 (844)
T ss_dssp             SSC--CCEECCSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBCSSSCSSS
T ss_pred             ccc--eEECCCCccccccccchhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCcccccceeccccccccccccccc
Confidence            222  33333332221 22222110    01136666666663221111                               


Q ss_pred             ------CCCC--CCCCCcceecccCCceEeCccccCCCcCCCCCCcceeeccccchhhhcCCC---CcCCcccEEEEecC
Q 039689          392 ------SVGQ--LPFLKDPVISGMGRVKIVGSEFYGSSCSVSFPSLETLFFVDICSKLQGTLP---ERLLLLEKLNIFRC  460 (763)
Q Consensus       392 ------~l~~--l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~f~~L~~L~l~~~~~~l~~~~~---~~~~~L~~L~l~~~  460 (763)
                            .+..  .++|+.|+++++.........|      ..+++|+.|++.+  +.+.+..|   ..+++|++|++++|
T Consensus       253 ~~~~~~~f~~l~~~~L~~L~Ls~n~l~~~~~~~~------~~l~~L~~L~L~~--n~i~~~~~~~~~~l~~L~~L~Ls~N  324 (844)
T 3j0a_A          253 KDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVF------ETLKDLKVLNLAY--NKINKIADEAFYGLDNLQVLNLSYN  324 (844)
T ss_dssp             TTGGGTTTTTTTTSCCCEEECTTCCCCEECSCCS------SSCCCCCEEEEES--CCCCEECTTTTTTCSSCCEEEEESC
T ss_pred             CCCChhhhhccccCCccEEECCCCcccccChhhh------hcCCCCCEEECCC--CcCCCCChHHhcCCCCCCEEECCCC
Confidence                  1122  2678888888876554443333      3378888888887  33333323   35678888888888


Q ss_pred             cc---hhhcCCCCCcccEEEEecCCcccccCCCccccceeccccchhhhhhcCCCCCCceEEEeccCCccccccccCcCC
Q 039689          461 EQ---LLVTLQCLPALRELEIDGCKGVVLSSPTDLSSLKLVHSRDMAKEVFEQGLPKLERLEIQHVREQTYLWRSETRLP  537 (763)
Q Consensus       461 ~~---l~~~l~~l~~L~~L~l~~~~~~~~~~~~~L~~L~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~p  537 (763)
                      ..   .+..+..+++|++|++++|.......                  ..+..+++|++|++++|...        .++
T Consensus       325 ~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~------------------~~~~~l~~L~~L~Ls~N~l~--------~i~  378 (844)
T 3j0a_A          325 LLGELYSSNFYGLPKVAYIDLQKNHIAIIQD------------------QTFKFLEKLQTLDLRDNALT--------TIH  378 (844)
T ss_dssp             CCSCCCSCSCSSCTTCCEEECCSCCCCCCCS------------------SCSCSCCCCCEEEEETCCSC--------CCS
T ss_pred             CCCccCHHHhcCCCCCCEEECCCCCCCccCh------------------hhhcCCCCCCEEECCCCCCC--------ccc
Confidence            62   23457778889999998886543221                  01133444555555544322        111


Q ss_pred             ccccccCceeeccCCc-----hhhhcceeeeccCCCcccccchhhhcCCCCcceEEEecCccccccCC---CCCCCCccE
Q 039689          538 QDIRSLNRLQISRCPQ-----LISLLRTVKIEDCNALESLPEAWMHNSNSSLESLKIRSCNSLVSFPD---FALPSQLRT  609 (763)
Q Consensus       538 ~~l~~L~~L~l~~~~~-----l~~~L~~L~l~~~~~l~~l~~~~~~~~l~~L~~L~l~~c~~l~~~~~---~~~~~~L~~  609 (763)
                       .+++|+.|+++++.-     ....++.|++++ +.++.++.......+++|+.|++++|.. ...+.   ...+++|+.
T Consensus       379 -~~~~L~~L~l~~N~l~~l~~~~~~l~~L~ls~-N~l~~l~~~~~~~~l~~L~~L~Ls~N~l-~~~~~~~~~~~~~~L~~  455 (844)
T 3j0a_A          379 -FIPSIPDIFLSGNKLVTLPKINLTANLIHLSE-NRLENLDILYFLLRVPHLQILILNQNRF-SSCSGDQTPSENPSLEQ  455 (844)
T ss_dssp             -SCCSCSEEEEESCCCCCCCCCCTTCCEEECCS-CCCCSSTTHHHHTTCTTCCEEEEESCCC-CCCCSSSSSCSCTTCCB
T ss_pred             -CCCCcchhccCCCCcccccccccccceeeccc-CccccCchhhhhhcCCccceeeCCCCcc-cccccccccccCCcccc
Confidence             133444444433210     001145555555 5566665443333578888888887664 33222   344678888


Q ss_pred             EEEccCCCCC-----CCchhhhcCCCCCcceEeeccCCCccccccccCCCCCcEEEEecCCCCCCCccceEEecCCCCCc
Q 039689          610 VTIKGCDALE-----SLPEAWMQNSSTSLESLAIDSCDSLTYIARIQLPPSLKRLIIFRCDNLRFNSLRKLKISGGCPDL  684 (763)
Q Consensus       610 L~l~~~~~l~-----~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~L~~L~l~~c~~l~~~~L~~L~l~~~~~~l  684 (763)
                      |++++|....     ..+..+  ..+++|+.|++++| .++.++...+.              .+++|+.|++++  +.+
T Consensus       456 L~Ls~N~l~~~~~~~~~~~~~--~~l~~L~~L~Ls~N-~l~~~~~~~~~--------------~l~~L~~L~Ls~--N~l  516 (844)
T 3j0a_A          456 LFLGENMLQLAWETELCWDVF--EGLSHLQVLYLNHN-YLNSLPPGVFS--------------HLTALRGLSLNS--NRL  516 (844)
T ss_dssp             CEEESCCCSSSCCSCCCSSCS--SCBCCEECCCCCHH-HHTTCCTTSSS--------------SCCSCSEEEEES--CCC
T ss_pred             ccCCCCccccccccccchhhh--cCcccccEEECCCC-cccccChhHcc--------------chhhhheeECCC--CCC
Confidence            8888884431     112233  67788888888888 67666655442              345566666665  455


Q ss_pred             cccCC--CCCCcCeEeeccCCCCccccCCCCCCCCcCceecccCCC
Q 039689          685 VSSPR--FPASLTELKISDMPSLERLSSIGENLTSLKFLDLDNCPK  728 (763)
Q Consensus       685 ~~~~~--~~~~L~~L~l~~~~~l~~ip~~~~~l~~L~~L~l~~c~~  728 (763)
                      ..+|.  .+++|+.|++++| .++.++..  .+++|+.|+++++|-
T Consensus       517 ~~l~~~~~~~~L~~L~Ls~N-~l~~~~~~--~~~~L~~l~l~~Np~  559 (844)
T 3j0a_A          517 TVLSHNDLPANLEILDISRN-QLLAPNPD--VFVSLSVLDITHNKF  559 (844)
T ss_dssp             SSCCCCCCCSCCCEEEEEEE-CCCCCCSC--CCSSCCEEEEEEECC
T ss_pred             CccChhhhhccccEEECCCC-cCCCCChh--HhCCcCEEEecCCCc
Confidence            55554  4467888888884 55544432  356788888877653

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=99.97  E-value=7.8e-30  Score=299.64  Aligned_cols=481  Identities=19%  Similarity=0.121  Sum_probs=315.9

Q ss_pred             cEEEecCCCCCccCcccCCCCcccEEecCCCCchhc-chhhhhcccccEEeeccccccccc-cccccCcccccccccCCc
Q 039689          200 RVFSLRGYNIFELPKAIENLKHLRFLDLSTTKIEIL-RESINTLYNLHTLLLEDCRRLKKL-CKDMGNLTKLHHLNNSNV  277 (763)
Q Consensus       200 r~L~L~~~~i~~lp~~~~~l~~L~~L~L~~~~i~~l-p~~~~~L~~L~~L~L~~~~~l~~l-p~~i~~L~~L~~L~l~~~  277 (763)
                      ++.+.++++++.+|.   -.++|++|+|++|.|+.+ |.+|+++++|++|+|++|.....+ |..|+++++|++|++++|
T Consensus         7 ~~~dcs~~~L~~vP~---lp~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N   83 (844)
T 3j0a_A            7 RIAFYRFCNLTQVPQ---VLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSS   83 (844)
T ss_dssp             EEEEESCCCSSCCCS---SCTTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTC
T ss_pred             eEEEccCCCCCCCCC---CCCCcCEEECCCCcCCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCC
Confidence            577888999999997   568999999999999977 788999999999999998777787 667999999999999999


Q ss_pred             cccccc-c-cCCCccCCCceeeecCcccccCcccchhhhhcCcccccceEEeeccCCCCCCccHHHHhhcCCCCCCc-eE
Q 039689          278 GSLEEM-L-MLKSLVHLQGTLEISRLENVKGVGDASEVQLNSKVNLKALYLQWGVRDAVEPKTETQVIDMLKPHQKL-EL  354 (763)
Q Consensus       278 ~~l~~l-~-~l~~L~~L~~~L~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~l~~l~~L-~L  354 (763)
                      . +..+ | .+.++++|+ .|.+.+..-....  .....+.++++|+.|++++|........      ..+..++.| .|
T Consensus        84 ~-l~~~~p~~~~~l~~L~-~L~Ls~n~l~~~~--~~~~~~~~L~~L~~L~Ls~N~l~~~~~~------~~~~~L~~L~~L  153 (844)
T 3j0a_A           84 K-IYFLHPDAFQGLFHLF-ELRLYFCGLSDAV--LKDGYFRNLKALTRLDLSKNQIRSLYLH------PSFGKLNSLKSI  153 (844)
T ss_dssp             C-CCEECTTSSCSCSSCC-CEECTTCCCSSCC--STTCCCSSCSSCCEEEEESCCCCCCCCC------GGGGTCSSCCEE
T ss_pred             c-CcccCHhHccCCcccC-EeeCcCCCCCccc--ccCccccccCCCCEEECCCCcccccccc------hhHhhCCCCCEE
Confidence            8 6665 3 378888888 8888764221111  1122478899999999999866543221      234566777 78


Q ss_pred             EEeeeCCCCC-CCccCCCCCCCceEEEEeccCCCCCCC-CCCCCCC------CCcceecccCCceEeCccccCC------
Q 039689          355 TITGYGGTKF-PIWLGDSLFSKLMLLKFDNCGTCTSLP-SVGQLPF------LKDPVISGMGRVKIVGSEFYGS------  420 (763)
Q Consensus       355 ~~~~~~~~~~-p~~~~~~~~~~L~~L~l~~~~~~~~l~-~l~~l~~------L~~L~l~~~~~l~~~~~~~~~~------  420 (763)
                      ++.++..... |..+.....++|+.|++++|......+ .++.+++      |+.|+++++.........+...      
T Consensus       154 ~Ls~N~i~~~~~~~l~~l~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l  233 (844)
T 3j0a_A          154 DFSSNQIFLVCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQA  233 (844)
T ss_dssp             EEESSCCCCCCSGGGHHHHHCSSCCCEECCSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCB
T ss_pred             ECCCCcCCeeCHHHcccccCCccceEECCCCccccccccchhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCcccc
Confidence            8887766553 444433111789999999998766555 4555544      9999999874321111111000      


Q ss_pred             ------------------------CcCC--CCCCcceeeccccchhhhcCC---CCcCCcccEEEEecCcc---hhhcCC
Q 039689          421 ------------------------SCSV--SFPSLETLFFVDICSKLQGTL---PERLLLLEKLNIFRCEQ---LLVTLQ  468 (763)
Q Consensus       421 ------------------------~~~~--~f~~L~~L~l~~~~~~l~~~~---~~~~~~L~~L~l~~~~~---l~~~l~  468 (763)
                                              ..+.  ..++|+.|++.+  +.+.+..   ...+++|+.|++.+|..   .+..+.
T Consensus       234 ~~L~l~~~~~~~~~~~~~l~~~~~~~f~~l~~~~L~~L~Ls~--n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~  311 (844)
T 3j0a_A          234 FSLILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSH--GFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFY  311 (844)
T ss_dssp             SEEECCSSCCBCSSSCSSSTTGGGTTTTTTTTSCCCEEECTT--CCCCEECSCCSSSCCCCCEEEEESCCCCEECTTTTT
T ss_pred             cceecccccccccccccccCCCChhhhhccccCCccEEECCC--CcccccChhhhhcCCCCCEEECCCCcCCCCChHHhc
Confidence                                    0001  136899999987  3333222   34678999999999863   234678


Q ss_pred             CCCcccEEEEecCCcccccCCCccccceeccccchhhhhhcCCCCCCceEEEeccCCccccccccCcCCccccccCceee
Q 039689          469 CLPALRELEIDGCKGVVLSSPTDLSSLKLVHSRDMAKEVFEQGLPKLERLEIQHVREQTYLWRSETRLPQDIRSLNRLQI  548 (763)
Q Consensus       469 ~l~~L~~L~l~~~~~~~~~~~~~L~~L~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~p~~l~~L~~L~l  548 (763)
                      .+++|++|++++|.......                  ..+..+++|+.|++++|.... +..   ..-..+++|+.|++
T Consensus       312 ~l~~L~~L~Ls~N~l~~~~~------------------~~~~~l~~L~~L~L~~N~i~~-~~~---~~~~~l~~L~~L~L  369 (844)
T 3j0a_A          312 GLDNLQVLNLSYNLLGELYS------------------SNFYGLPKVAYIDLQKNHIAI-IQD---QTFKFLEKLQTLDL  369 (844)
T ss_dssp             TCSSCCEEEEESCCCSCCCS------------------CSCSSCTTCCEEECCSCCCCC-CCS---SCSCSCCCCCEEEE
T ss_pred             CCCCCCEEECCCCCCCccCH------------------HHhcCCCCCCEEECCCCCCCc-cCh---hhhcCCCCCCEEEC
Confidence            89999999999997543211                  123668999999999996432 100   01134566666666


Q ss_pred             ccCCchhhhcceeeeccCCCcccccchhhhcCCCCcceEEEecCccccccCCCCCCCCccEEEEccCCCCCCCchhhhcC
Q 039689          549 SRCPQLISLLRTVKIEDCNALESLPEAWMHNSNSSLESLKIRSCNSLVSFPDFALPSQLRTVTIKGCDALESLPEAWMQN  628 (763)
Q Consensus       549 ~~~~~l~~~L~~L~l~~~~~l~~l~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~  628 (763)
                      ++                +.++.++.      +++|+.|++++|. +..+|..  ..+++.|++++| .++.++......
T Consensus       370 s~----------------N~l~~i~~------~~~L~~L~l~~N~-l~~l~~~--~~~l~~L~ls~N-~l~~l~~~~~~~  423 (844)
T 3j0a_A          370 RD----------------NALTTIHF------IPSIPDIFLSGNK-LVTLPKI--NLTANLIHLSEN-RLENLDILYFLL  423 (844)
T ss_dssp             ET----------------CCSCCCSS------CCSCSEEEEESCC-CCCCCCC--CTTCCEEECCSC-CCCSSTTHHHHT
T ss_pred             CC----------------CCCCcccC------CCCcchhccCCCC-ccccccc--ccccceeecccC-ccccCchhhhhh
Confidence            65                33443332      4556666665543 3344432  345556666655 333333221114


Q ss_pred             CCCCcceEeeccCCCcccccccc---CCCCCcEEEEecCCCC-------------CCCccceEEecCCCCCccccCC---
Q 039689          629 SSTSLESLAIDSCDSLTYIARIQ---LPPSLKRLIIFRCDNL-------------RFNSLRKLKISGGCPDLVSSPR---  689 (763)
Q Consensus       629 ~l~~L~~L~l~~c~~l~~l~~~~---~~~~L~~L~l~~c~~l-------------~~~~L~~L~l~~~~~~l~~~~~---  689 (763)
                      .+++|+.|++++| .++.++...   ..++|+.|+++++.--             .+++|+.|++++  +.+..++.   
T Consensus       424 ~l~~L~~L~Ls~N-~l~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~l~~L~~L~Ls~--N~l~~~~~~~~  500 (844)
T 3j0a_A          424 RVPHLQILILNQN-RFSSCSGDQTPSENPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNH--NYLNSLPPGVF  500 (844)
T ss_dssp             TCTTCCEEEEESC-CCCCCCSSSSSCSCTTCCBCEEESCCCSSSCCSCCCSSCSSCBCCEECCCCCH--HHHTTCCTTSS
T ss_pred             cCCccceeeCCCC-cccccccccccccCCccccccCCCCccccccccccchhhhcCcccccEEECCC--CcccccChhHc
Confidence            5556666666655 333332221   1345555555554310             357788888886  46666665   


Q ss_pred             -CCCCcCeEeeccCCCCccccCCCCCCCCcCceecccCCCCccccCCCcccccceeeeccCh
Q 039689          690 -FPASLTELKISDMPSLERLSSIGENLTSLKFLDLDNCPKLKYFSKQGLPKSLLRLIIDECP  750 (763)
Q Consensus       690 -~~~~L~~L~l~~~~~l~~ip~~~~~l~~L~~L~l~~c~~L~~l~~~~~~~~L~~L~i~~C~  750 (763)
                       .+++|++|++++ +.++.+|..... ++|+.|++++| +++.++...+ ++|+.|+++++|
T Consensus       501 ~~l~~L~~L~Ls~-N~l~~l~~~~~~-~~L~~L~Ls~N-~l~~~~~~~~-~~L~~l~l~~Np  558 (844)
T 3j0a_A          501 SHLTALRGLSLNS-NRLTVLSHNDLP-ANLEILDISRN-QLLAPNPDVF-VSLSVLDITHNK  558 (844)
T ss_dssp             SSCCSCSEEEEES-CCCSSCCCCCCC-SCCCEEEEEEE-CCCCCCSCCC-SSCCEEEEEEEC
T ss_pred             cchhhhheeECCC-CCCCccChhhhh-ccccEEECCCC-cCCCCChhHh-CCcCEEEecCCC
Confidence             568999999999 588888865544 89999999996 6777766544 589999998755

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=99.97  E-value=6.3e-30  Score=287.25  Aligned_cols=431  Identities=22%  Similarity=0.227  Sum_probs=248.2

Q ss_pred             hhhhhccCCCCcccEEEecCCCCCccC-cccCCCCcccEEecCCCCchhcchh-hhhcccccEEeeccccccc--ccccc
Q 039689          187 QNVLQRLLNLPRLRVFSLRGYNIFELP-KAIENLKHLRFLDLSTTKIEILRES-INTLYNLHTLLLEDCRRLK--KLCKD  262 (763)
Q Consensus       187 ~~~~~~~~~l~~Lr~L~L~~~~i~~lp-~~~~~l~~L~~L~L~~~~i~~lp~~-~~~L~~L~~L~L~~~~~l~--~lp~~  262 (763)
                      ...+..|.++++|++|++++|.++.++ ..|+.+++|++|+|++|.++.+|+. |+++++|++|++++| .+.  ..|..
T Consensus        40 ~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~~~~  118 (549)
T 2z81_A           40 YIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGN-PYQTLGVTSL  118 (549)
T ss_dssp             EECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCSCCHHHHTTCTTCCEEECTTC-CCSSSCSSCS
T ss_pred             ccChhhhhcCCcccEEECCCCCcCccChhhccccccCCEEECCCCccCccCHHHhccCCCCcEEECCCC-cccccchhhh
Confidence            334567899999999999999999885 7899999999999999999988665 999999999999995 565  45678


Q ss_pred             ccCcccccccccCCcccccccc--cCCCccCCCceeeecCcccccCcccchhhhhcCcccccceEEeeccCCCCCCccHH
Q 039689          263 MGNLTKLHHLNNSNVGSLEEML--MLKSLVHLQGTLEISRLENVKGVGDASEVQLNSKVNLKALYLQWGVRDAVEPKTET  340 (763)
Q Consensus       263 i~~L~~L~~L~l~~~~~l~~l~--~l~~L~~L~~~L~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~  340 (763)
                      ++++++|++|++++|..+..++  .+..+++|+ .+.+.+.    .+.......+..+++|+.|++.++..         
T Consensus       119 ~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~-~L~L~~n----~l~~~~~~~l~~l~~L~~L~l~~n~~---------  184 (549)
T 2z81_A          119 FPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLN-ELEIKAL----SLRNYQSQSLKSIRDIHHLTLHLSES---------  184 (549)
T ss_dssp             CTTCTTCCEEEEEESSSCCEECTTTTTTCCEEE-EEEEEET----TCCEECTTTTTTCSEEEEEEEECSBS---------
T ss_pred             hhccCCccEEECCCCccccccCHhhhhcccccC-eeeccCC----cccccChhhhhccccCceEecccCcc---------
Confidence            9999999999999997667776  377888888 7777653    23334455677888899888876632         


Q ss_pred             HHhhcCCCCCCceEEEeeeCCCCCCCccCCCCCCCceEEEEeccCCCCC----CCCCCCCCCCCcceecccCCceEeCcc
Q 039689          341 QVIDMLKPHQKLELTITGYGGTKFPIWLGDSLFSKLMLLKFDNCGTCTS----LPSVGQLPFLKDPVISGMGRVKIVGSE  416 (763)
Q Consensus       341 ~~l~~l~~l~~L~L~~~~~~~~~~p~~~~~~~~~~L~~L~l~~~~~~~~----l~~l~~l~~L~~L~l~~~~~l~~~~~~  416 (763)
                                           ..+|.++.. .+++|+.|++++|...+.    .+....+++|+.|+++++.........
T Consensus       185 ---------------------~~~~~~~~~-~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~  242 (549)
T 2z81_A          185 ---------------------AFLLEIFAD-ILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNE  242 (549)
T ss_dssp             ---------------------TTHHHHHHH-STTTBSEEEEESCBCTTCCCCCCSSCCCCCCCCEEEEESCEEEHHHHHH
T ss_pred             ---------------------cccchhhHh-hcccccEEEccCCccccccccccchhhhhhcccceeccccccchhHHHH
Confidence                                 122222211 167788888888764332    223345677777777765321110000


Q ss_pred             ccCCCcCCCCCCcceeeccccchhhhcCCCCcCCcccEEEEecCcch---------hhcCCCCCcccEEEEecCCccccc
Q 039689          417 FYGSSCSVSFPSLETLFFVDICSKLQGTLPERLLLLEKLNIFRCEQL---------LVTLQCLPALRELEIDGCKGVVLS  487 (763)
Q Consensus       417 ~~~~~~~~~f~~L~~L~l~~~~~~l~~~~~~~~~~L~~L~l~~~~~l---------~~~l~~l~~L~~L~l~~~~~~~~~  487 (763)
                      +.  .....+++|+.+++.+                       |...         ...+..+++|+.|.+.++......
T Consensus       243 l~--~~~~~~~~L~~l~l~~-----------------------~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~  297 (549)
T 2z81_A          243 LL--KLLRYILELSEVEFDD-----------------------CTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFY  297 (549)
T ss_dssp             HH--GGGGGCTTCCEEEEES-----------------------CEEECCSCCCCCTTTCCCCCTTCCEEEEESCBCSCGG
T ss_pred             HH--HHhhhhcccccccccc-----------------------ccccccccccccchhhhhhhcccccccccccccchhh
Confidence            00  0001234444444443                       3210         012334555555555554322211


Q ss_pred             CCCccccceeccccchhhhhhcCCCCCCceEEEeccCCccccccccCcCCc----cccccCceeeccCCchh--------
Q 039689          488 SPTDLSSLKLVHSRDMAKEVFEQGLPKLERLEIQHVREQTYLWRSETRLPQ----DIRSLNRLQISRCPQLI--------  555 (763)
Q Consensus       488 ~~~~L~~L~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~p~----~l~~L~~L~l~~~~~l~--------  555 (763)
                      .+..+..             .....++|++|++++|.. .       .+|.    .+++|+.|+++++.-..        
T Consensus       298 ~~~~l~~-------------~~~~~~~L~~L~l~~n~l-~-------~ip~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~  356 (549)
T 2z81_A          298 LFYDLST-------------VYSLLEKVKRITVENSKV-F-------LVPCSFSQHLKSLEFLDLSENLMVEEYLKNSAC  356 (549)
T ss_dssp             GSCCCCH-------------HHHHSTTCCEEEEESSCC-C-------CCCHHHHHHCTTCCEEECCSSCCCHHHHHHHTC
T ss_pred             hcccchh-------------hhhhcccceEEEeccCcc-c-------cCCHHHHhcCccccEEEccCCccccccccchhh
Confidence            1111000             001233445555554432 1       2221    12233333322211000        


Q ss_pred             ----hhcceeeeccCCCcccccc-hhhhcCCCCcceEEEecCccccccCC-CCCCCCccEEEEccCCCCCCCchhhhcCC
Q 039689          556 ----SLLRTVKIEDCNALESLPE-AWMHNSNSSLESLKIRSCNSLVSFPD-FALPSQLRTVTIKGCDALESLPEAWMQNS  629 (763)
Q Consensus       556 ----~~L~~L~l~~~~~l~~l~~-~~~~~~l~~L~~L~l~~c~~l~~~~~-~~~~~~L~~L~l~~~~~l~~~~~~~~~~~  629 (763)
                          ..|+.|++++ +.++.++. ......+++|++|++++|. ++.+|. +..+++|++|++++| .++.+|..+    
T Consensus       357 ~~~l~~L~~L~Ls~-N~l~~~~~~~~~~~~l~~L~~L~Ls~N~-l~~lp~~~~~~~~L~~L~Ls~N-~l~~l~~~~----  429 (549)
T 2z81_A          357 KGAWPSLQTLVLSQ-NHLRSMQKTGEILLTLKNLTSLDISRNT-FHPMPDSCQWPEKMRFLNLSST-GIRVVKTCI----  429 (549)
T ss_dssp             TTSSTTCCEEECTT-SCCCCHHHHHHHGGGCTTCCEEECTTCC-CCCCCSCCCCCTTCCEEECTTS-CCSCCCTTS----
T ss_pred             hhccccCcEEEccC-CcccccccchhhhhcCCCCCEEECCCCC-CccCChhhcccccccEEECCCC-Ccccccchh----
Confidence                0023333333 33444332 0011225555555555543 334443 344455555555555 234444321    


Q ss_pred             CCCcceEeeccCCCccccccccCCCCCcEEEEecCCCCCCCccceEEecCCCCCccccCC--CCCCcCeEeeccCCCCcc
Q 039689          630 STSLESLAIDSCDSLTYIARIQLPPSLKRLIIFRCDNLRFNSLRKLKISGGCPDLVSSPR--FPASLTELKISDMPSLER  707 (763)
Q Consensus       630 l~~L~~L~l~~c~~l~~l~~~~~~~~L~~L~l~~c~~l~~~~L~~L~l~~~~~~l~~~~~--~~~~L~~L~l~~~~~l~~  707 (763)
                      .++|+.|++++| .++.++.                  .+++|+.|++++  +.+..+|.  .+++|++|++++| .++.
T Consensus       430 ~~~L~~L~Ls~N-~l~~~~~------------------~l~~L~~L~Ls~--N~l~~ip~~~~l~~L~~L~Ls~N-~l~~  487 (549)
T 2z81_A          430 PQTLEVLDVSNN-NLDSFSL------------------FLPRLQELYISR--NKLKTLPDASLFPVLLVMKISRN-QLKS  487 (549)
T ss_dssp             CTTCSEEECCSS-CCSCCCC------------------CCTTCCEEECCS--SCCSSCCCGGGCTTCCEEECCSS-CCCC
T ss_pred             cCCceEEECCCC-Chhhhcc------------------cCChhcEEECCC--CccCcCCCcccCccCCEEecCCC-ccCC
Confidence            245555555555 3333210                  356777777776  46667776  5789999999995 6777


Q ss_pred             ccCC-CCCCCCcCceecccCCCC
Q 039689          708 LSSI-GENLTSLKFLDLDNCPKL  729 (763)
Q Consensus       708 ip~~-~~~l~~L~~L~l~~c~~L  729 (763)
                      +|.. +..+++|++|++++|+-.
T Consensus       488 ~~~~~~~~l~~L~~L~l~~N~~~  510 (549)
T 2z81_A          488 VPDGIFDRLTSLQKIWLHTNPWD  510 (549)
T ss_dssp             CCTTGGGGCTTCCEEECCSSCBC
T ss_pred             cCHHHHhcCcccCEEEecCCCcc
Confidence            6654 689999999999998743

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=99.97  E-value=1.1e-29  Score=286.68  Aligned_cols=172  Identities=17%  Similarity=0.149  Sum_probs=120.2

Q ss_pred             CcccEEEecCCCCCccC-cccCCCCcccEEecCCCCchhcc-hhhhhcccccEEeecccccccccc-ccccCcccccccc
Q 039689          197 PRLRVFSLRGYNIFELP-KAIENLKHLRFLDLSTTKIEILR-ESINTLYNLHTLLLEDCRRLKKLC-KDMGNLTKLHHLN  273 (763)
Q Consensus       197 ~~Lr~L~L~~~~i~~lp-~~~~~l~~L~~L~L~~~~i~~lp-~~~~~L~~L~~L~L~~~~~l~~lp-~~i~~L~~L~~L~  273 (763)
                      +.+++|++++|.++.++ ..|.++++|++|+|++|.++.++ ..|+++++|++|++++| .+..+| ..|+++++|++|+
T Consensus        28 ~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~  106 (570)
T 2z63_A           28 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGN-PIQSLALGAFSGLSSLQKLV  106 (570)
T ss_dssp             SSCCEEECCSCCCCEECTTTTTTCSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTC-CCCEECTTTTTTCTTCCEEE
T ss_pred             ccccEEEccCCccCccChhHhhCCCCceEEECCCCcCCccCcccccCchhCCEEeCcCC-cCCccCHhhhcCcccccccc
Confidence            47999999999999884 68999999999999999999884 56899999999999995 566665 5699999999999


Q ss_pred             cCCccccccccc--CCCccCCCceeeecCcccccCccc-chhhhhcCcccccceEEeeccCCCCCCccHHHHhhcCCCCC
Q 039689          274 NSNVGSLEEMLM--LKSLVHLQGTLEISRLENVKGVGD-ASEVQLNSKVNLKALYLQWGVRDAVEPKTETQVIDMLKPHQ  350 (763)
Q Consensus       274 l~~~~~l~~l~~--l~~L~~L~~~L~~~~~~~~~~~~~-~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~l~~l~  350 (763)
                      +++|. +..++.  ++++++|+ .|.+.+..    +.. ..+..+.++++|+.|++++|                     
T Consensus       107 L~~n~-l~~l~~~~~~~l~~L~-~L~L~~n~----l~~~~lp~~~~~l~~L~~L~l~~n---------------------  159 (570)
T 2z63_A          107 AVETN-LASLENFPIGHLKTLK-ELNVAHNL----IQSFKLPEYFSNLTNLEHLDLSSN---------------------  159 (570)
T ss_dssp             CTTSC-CCCSTTCSCTTCTTCC-EEECCSSC----CCCCCCCGGGGGCTTCCEEECTTS---------------------
T ss_pred             ccccc-cccCCCcccccccccc-EEecCCCc----cceecChhhhcccCCCCEEeCcCC---------------------
Confidence            99997 776664  66666666 66665421    111 11334556666666666544                     


Q ss_pred             CceEEEeeeCCCCC-CCccCCCCCCCc----eEEEEeccCCCCCCCCCCCCCCCCcceeccc
Q 039689          351 KLELTITGYGGTKF-PIWLGDSLFSKL----MLLKFDNCGTCTSLPSVGQLPFLKDPVISGM  407 (763)
Q Consensus       351 ~L~L~~~~~~~~~~-p~~~~~~~~~~L----~~L~l~~~~~~~~l~~l~~l~~L~~L~l~~~  407 (763)
                               ....+ |..+..  +++|    +.|++++|......+......+|+.|+++++
T Consensus       160 ---------~l~~~~~~~~~~--l~~L~~~~~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n  210 (570)
T 2z63_A          160 ---------KIQSIYCTDLRV--LHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKLTLRNN  210 (570)
T ss_dssp             ---------CCCEECGGGGHH--HHTCTTCCCEEECTTCCCCEECTTTTTTCEEEEEEEESC
T ss_pred             ---------ccceecHHHccc--hhccchhhhhcccCCCCceecCHHHhccCcceeEecccc
Confidence                     22222 223332  4455    7788888865444443333347888888775

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=99.97  E-value=4.9e-31  Score=299.35  Aligned_cols=337  Identities=16%  Similarity=0.227  Sum_probs=200.5

Q ss_pred             CchhcchhhhhcccccEEeecccccccc------------------cccccc--CcccccccccCCccccccccc-CCCc
Q 039689          231 KIEILRESINTLYNLHTLLLEDCRRLKK------------------LCKDMG--NLTKLHHLNNSNVGSLEEMLM-LKSL  289 (763)
Q Consensus       231 ~i~~lp~~~~~L~~L~~L~L~~~~~l~~------------------lp~~i~--~L~~L~~L~l~~~~~l~~l~~-l~~L  289 (763)
                      .++.+|.+|+++++|++|+|++|. +..                  +|..++  ++++|++|++++|.....+|. +.++
T Consensus       194 ~l~~ip~~l~~l~~L~~L~Ls~n~-l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l  272 (636)
T 4eco_A          194 NITFVSKAVMRLTKLRQFYMGNSP-FVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKAL  272 (636)
T ss_dssp             EEEEECGGGGGCTTCCEEEEESCC-CCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTC
T ss_pred             CCccCCHHHhcccCCCEEECcCCc-cccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChHHHhcC
Confidence            344578888888888888888854 555                  888888  888888888888875555664 6777


Q ss_pred             cCCCceeeecCcccccCccc-chhhhhcC------cccccceEEeeccCCCCCCccHHHHhhcCCCCCCceEEEeeeCCC
Q 039689          290 VHLQGTLEISRLENVKGVGD-ASEVQLNS------KVNLKALYLQWGVRDAVEPKTETQVIDMLKPHQKLELTITGYGGT  362 (763)
Q Consensus       290 ~~L~~~L~~~~~~~~~~~~~-~~~~~l~~------l~~L~~L~l~~~~~~~~~~~~~~~~l~~l~~l~~L~L~~~~~~~~  362 (763)
                      ++|+ .|.+.+...   +.. ..+..+..      +++|+.|++++|                              ...
T Consensus       273 ~~L~-~L~Ls~n~~---l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n------------------------------~l~  318 (636)
T 4eco_A          273 PEMQ-LINVACNRG---ISGEQLKDDWQALADAPVGEKIQIIYIGYN------------------------------NLK  318 (636)
T ss_dssp             SSCC-EEECTTCTT---SCHHHHHHHHHHHHHSGGGGTCCEEECCSS------------------------------CCS
T ss_pred             CCCC-EEECcCCCC---CccccchHHHHhhhccccCCCCCEEECCCC------------------------------cCC
Confidence            7777 676665321   111 22233333      367777777655                              333


Q ss_pred             CCCC--ccCCCCCCCceEEEEeccCCCCCCCCCCCCCCCCcceecccCCceEeCccccCCCcCCCCCC-cceeeccccch
Q 039689          363 KFPI--WLGDSLFSKLMLLKFDNCGTCTSLPSVGQLPFLKDPVISGMGRVKIVGSEFYGSSCSVSFPS-LETLFFVDICS  439 (763)
Q Consensus       363 ~~p~--~~~~~~~~~L~~L~l~~~~~~~~l~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~f~~-L~~L~l~~~~~  439 (763)
                      .+|.  ++..  +++|+.|++++|...+.+|.++.+++|+.|++++|... .++..+      ..+++ |++|++.+  +
T Consensus       319 ~ip~~~~l~~--l~~L~~L~L~~N~l~g~ip~~~~l~~L~~L~L~~N~l~-~lp~~l------~~l~~~L~~L~Ls~--N  387 (636)
T 4eco_A          319 TFPVETSLQK--MKKLGMLECLYNQLEGKLPAFGSEIKLASLNLAYNQIT-EIPANF------CGFTEQVENLSFAH--N  387 (636)
T ss_dssp             SCCCHHHHTT--CTTCCEEECCSCCCEEECCCCEEEEEESEEECCSSEEE-ECCTTS------EEECTTCCEEECCS--S
T ss_pred             ccCchhhhcc--CCCCCEEeCcCCcCccchhhhCCCCCCCEEECCCCccc-cccHhh------hhhcccCcEEEccC--C
Confidence            5666  5655  77888888888866556777777888888888876433 333332      23566 77777776  3


Q ss_pred             hhhcCCCCc-----CCcccEEEEecCcch---hhcCC-------CCCcccEEEEecCCcccccCCCccccceeccccchh
Q 039689          440 KLQGTLPER-----LLLLEKLNIFRCEQL---LVTLQ-------CLPALRELEIDGCKGVVLSSPTDLSSLKLVHSRDMA  504 (763)
Q Consensus       440 ~l~~~~~~~-----~~~L~~L~l~~~~~l---~~~l~-------~l~~L~~L~l~~~~~~~~~~~~~L~~L~~~~~~~~~  504 (763)
                      .+. .+|..     +++|+.|++++|...   +..++       .+++|++|++++|....+                  
T Consensus       388 ~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~~l------------------  448 (636)
T 4eco_A          388 KLK-YIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKF------------------  448 (636)
T ss_dssp             CCS-SCCSCCCTTCSSCEEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEECCSSCCCSC------------------
T ss_pred             cCc-ccchhhhhcccCccCEEECcCCcCCCcchhhhcccccccccCCCCCEEECcCCccCcC------------------
Confidence            333 44432     235677777766532   22344       456777777777754421                  


Q ss_pred             hhhhcCCCCCCceEEEeccCCccccccccCcCCcc-ccccCceeeccCCchhhhcceeeeccCCCcccccchhhhcCCCC
Q 039689          505 KEVFEQGLPKLERLEIQHVREQTYLWRSETRLPQD-IRSLNRLQISRCPQLISLLRTVKIEDCNALESLPEAWMHNSNSS  583 (763)
Q Consensus       505 ~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~p~~-l~~L~~L~l~~~~~l~~~L~~L~l~~~~~l~~l~~~~~~~~l~~  583 (763)
                      +...+..+++|++|++++|...        .+|.. +..+. -.+.+++.    |+.|++++ +.++.+|..+....+++
T Consensus       449 p~~~~~~l~~L~~L~Ls~N~l~--------~i~~~~~~~~~-~~~~~l~~----L~~L~Ls~-N~l~~lp~~~~~~~l~~  514 (636)
T 4eco_A          449 PKELFSTGSPLSSINLMGNMLT--------EIPKNSLKDEN-ENFKNTYL----LTSIDLRF-NKLTKLSDDFRATTLPY  514 (636)
T ss_dssp             CTHHHHTTCCCSEEECCSSCCS--------BCCSSSSEETT-EECTTGGG----CCEEECCS-SCCCBCCGGGSTTTCTT
T ss_pred             CHHHHccCCCCCEEECCCCCCC--------CcCHHHhcccc-ccccccCC----ccEEECcC-CcCCccChhhhhccCCC
Confidence            1122245677777777777643        22211 11000 00000000    44444444 45556776643123677


Q ss_pred             cceEEEecCccccccCC-CCCCCCccEEEEc------cCCCCCCCchhhhcCCCCCcceEeeccCCCccccccc
Q 039689          584 LESLKIRSCNSLVSFPD-FALPSQLRTVTIK------GCDALESLPEAWMQNSSTSLESLAIDSCDSLTYIARI  650 (763)
Q Consensus       584 L~~L~l~~c~~l~~~~~-~~~~~~L~~L~l~------~~~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~  650 (763)
                      |++|++++|.. +.+|. +..+++|++|+++      +|...+.+|..+  ..+++|+.|++++| .++.+|..
T Consensus       515 L~~L~Ls~N~l-~~ip~~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p~~l--~~l~~L~~L~Ls~N-~l~~ip~~  584 (636)
T 4eco_A          515 LVGIDLSYNSF-SKFPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGI--TLCPSLTQLQIGSN-DIRKVNEK  584 (636)
T ss_dssp             CCEEECCSSCC-SSCCCGGGGCSSCCEEECCSCBCTTCCBCCCCCCTTG--GGCSSCCEEECCSS-CCCBCCSC
T ss_pred             cCEEECCCCCC-CCcChhhhcCCCCCEEECCCCcccccCcccccChHHH--hcCCCCCEEECCCC-cCCccCHh
Confidence            77777777553 34654 5566777777774      344455666666  56777777777777 44555543

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=99.97  E-value=2.5e-29  Score=280.21  Aligned_cols=188  Identities=18%  Similarity=0.153  Sum_probs=102.3

Q ss_pred             cEEEecCCCCCccCcccCCCCcccEEecCCCCchhcc-hhhhhcccccEEeeccccccccc-cccccCcccccccccCCc
Q 039689          200 RVFSLRGYNIFELPKAIENLKHLRFLDLSTTKIEILR-ESINTLYNLHTLLLEDCRRLKKL-CKDMGNLTKLHHLNNSNV  277 (763)
Q Consensus       200 r~L~L~~~~i~~lp~~~~~l~~L~~L~L~~~~i~~lp-~~~~~L~~L~~L~L~~~~~l~~l-p~~i~~L~~L~~L~l~~~  277 (763)
                      ++|++++|.++.+|..+.  ++|++|+|++|.++.+| ..|+++++|++|++++| .+..+ |..|+++++|++|++++|
T Consensus         3 ~~l~ls~n~l~~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~Ls~N   79 (520)
T 2z7x_B            3 FLVDRSKNGLIHVPKDLS--QKTTILNISQNYISELWTSDILSLSKLRILIISHN-RIQYLDISVFKFNQELEYLDLSHN   79 (520)
T ss_dssp             CEEECTTSCCSSCCCSCC--TTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSS-CCCEEEGGGGTTCTTCCEEECCSS
T ss_pred             ceEecCCCCccccccccc--ccccEEECCCCcccccChhhccccccccEEecCCC-ccCCcChHHhhcccCCCEEecCCC
Confidence            466777777766666554  67777777777766654 46677777777777764 34444 555677777777777776


Q ss_pred             ccccccccCCCccCCCceeeecCcccccCccc-chhhhhcCcccccceEEeeccCCCCCCccHHHHhhcCCCCCCc-eEE
Q 039689          278 GSLEEMLMLKSLVHLQGTLEISRLENVKGVGD-ASEVQLNSKVNLKALYLQWGVRDAVEPKTETQVIDMLKPHQKL-ELT  355 (763)
Q Consensus       278 ~~l~~l~~l~~L~~L~~~L~~~~~~~~~~~~~-~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~l~~l~~L-~L~  355 (763)
                      . +..+|.. .+++|+ .|++.+..    +.. ..+..+.++++|+.|++++|....       ..+..+..+ .| .|.
T Consensus        80 ~-l~~lp~~-~l~~L~-~L~L~~N~----l~~~~~p~~~~~l~~L~~L~L~~n~l~~-------~~~~~l~~L-~L~~L~  144 (520)
T 2z7x_B           80 K-LVKISCH-PTVNLK-HLDLSFNA----FDALPICKEFGNMSQLKFLGLSTTHLEK-------SSVLPIAHL-NISKVL  144 (520)
T ss_dssp             C-CCEEECC-CCCCCS-EEECCSSC----CSSCCCCGGGGGCTTCCEEEEEESSCCG-------GGGGGGTTS-CEEEEE
T ss_pred             c-eeecCcc-ccCCcc-EEeccCCc----cccccchhhhccCCcceEEEecCcccch-------hhccccccc-eeeEEE
Confidence            5 6666655 566666 55554421    111 122456667777777777664322       122223333 22 444


Q ss_pred             EeeeCC---CCCCCccCCCCCC-CceEEEEeccCCCCCCC--CCCCCCCCCcceeccc
Q 039689          356 ITGYGG---TKFPIWLGDSLFS-KLMLLKFDNCGTCTSLP--SVGQLPFLKDPVISGM  407 (763)
Q Consensus       356 ~~~~~~---~~~p~~~~~~~~~-~L~~L~l~~~~~~~~l~--~l~~l~~L~~L~l~~~  407 (763)
                      +.++..   ...|.++..  +. +...+++++|.....++  .+..+++|+.++++++
T Consensus       145 l~~n~l~~~~~~~~~l~~--l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n  200 (520)
T 2z7x_B          145 LVLGETYGEKEDPEGLQD--FNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCV  200 (520)
T ss_dssp             EEECTTTTSSCCTTTTTT--CCEEEEEEECCSSSCCCCCCCCCCTTCSEEEECCEEEC
T ss_pred             eecccccccccccccccc--cccceEEEEeccCcchhhhhhhhhhcccceeecccccc
Confidence            444333   223443332  21 22234445554444443  3455666666666654

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=99.96  E-value=1.9e-29  Score=286.33  Aligned_cols=441  Identities=14%  Similarity=0.166  Sum_probs=260.2

Q ss_pred             CcccEEEecCCCCC-ccCcccCCCCcccEEecCCCCch-------------hcchhh---------------------h-
Q 039689          197 PRLRVFSLRGYNIF-ELPKAIENLKHLRFLDLSTTKIE-------------ILRESI---------------------N-  240 (763)
Q Consensus       197 ~~Lr~L~L~~~~i~-~lp~~~~~l~~L~~L~L~~~~i~-------------~lp~~~---------------------~-  240 (763)
                      .+++.|+|+++.+. .+|.+|+.|++|++|+|++|.+.             .+|...                     + 
T Consensus        81 ~~V~~L~L~~~~l~g~lp~~l~~L~~L~~L~Ls~N~~~~~~~~~~~~~~~~~~~~~~~~~l~l~l~~~~l~~~~~~~~~~  160 (636)
T 4eco_A           81 GRVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQKQKMRMHYQKTFVDYDPREDFSD  160 (636)
T ss_dssp             CCEEEEECTTSCCEEEECGGGGGCTTCCEEESCCGGGGGTCCSBSTTSBCTTCCHHHHHHHHTHHHHHHTCCCGGGGSCH
T ss_pred             CCEEEEEecCcccCCcCChHHhcCccceEEECcCCccccCCccccccccccCchHHHHHHHHhhHHHhhhccCchhhHHH
Confidence            57899999999987 57999999999999999999662             222211                     1 


Q ss_pred             hcc------------------cccEEeecc-ccccccccccccCcccccccccCCcccccc------------------c
Q 039689          241 TLY------------------NLHTLLLED-CRRLKKLCKDMGNLTKLHHLNNSNVGSLEE------------------M  283 (763)
Q Consensus       241 ~L~------------------~L~~L~L~~-~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~------------------l  283 (763)
                      .+.                  .++.+.+.. ++.+..+|..++++++|++|++++|. +..                  +
T Consensus       161 ~~~~l~~~~l~~~~~~~~~~~~l~~l~l~~~~n~l~~ip~~l~~l~~L~~L~Ls~n~-l~~~~~~~~~~~~~~~~~~~~i  239 (636)
T 4eco_A          161 LIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNNITFVSKAVMRLTKLRQFYMGNSP-FVAENICEAWENENSEYAQQYK  239 (636)
T ss_dssp             HHHHHHHHCTTSCCCCCCCCCCCCTTTTTCCSCEEEEECGGGGGCTTCCEEEEESCC-CCGGGBSSSCSCTTSHHHHHHT
T ss_pred             HHHHHhhcCccccccccccccchhhhhhccccCCCccCCHHHhcccCCCEEECcCCc-cccccccccccccccchhcccC
Confidence            011                  112222221 34666799999999999999999998 766                  6


Q ss_pred             cc-CC--CccCCCceeeecCcccccCcccchhhhhcCcccccceEEeecc-CCCCCCccHHHHhhcCCCCCCceEEEeee
Q 039689          284 LM-LK--SLVHLQGTLEISRLENVKGVGDASEVQLNSKVNLKALYLQWGV-RDAVEPKTETQVIDMLKPHQKLELTITGY  359 (763)
Q Consensus       284 ~~-l~--~L~~L~~~L~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~-~~~~~~~~~~~~l~~l~~l~~L~L~~~~~  359 (763)
                      |. +.  ++++|+ .|.+.+....    ...+..+.++++|+.|++++|. ...                          
T Consensus       240 p~~l~~~~l~~L~-~L~L~~n~l~----~~~p~~l~~l~~L~~L~Ls~n~~l~~--------------------------  288 (636)
T 4eco_A          240 TEDLKWDNLKDLT-DVEVYNCPNL----TKLPTFLKALPEMQLINVACNRGISG--------------------------  288 (636)
T ss_dssp             TSCCCGGGCTTCC-EEEEECCTTC----SSCCTTTTTCSSCCEEECTTCTTSCH--------------------------
T ss_pred             chhhhhcccCCCC-EEEecCCcCC----ccChHHHhcCCCCCEEECcCCCCCcc--------------------------
Confidence            64 44  566666 5555443211    1222344555555555554442 110                          


Q ss_pred             CCCCCCCccCC----CCCCCceEEEEeccCCCCCCCC---CCCCCCCCcceecccCCceEeCccccCCCcCCCCCCccee
Q 039689          360 GGTKFPIWLGD----SLFSKLMLLKFDNCGTCTSLPS---VGQLPFLKDPVISGMGRVKIVGSEFYGSSCSVSFPSLETL  432 (763)
Q Consensus       360 ~~~~~p~~~~~----~~~~~L~~L~l~~~~~~~~l~~---l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~f~~L~~L  432 (763)
                        ..+|..++.    ..+++|+.|++++|... .+|.   ++.+++|+.|++++|.....++ .+               
T Consensus       289 --~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~-~ip~~~~l~~l~~L~~L~L~~N~l~g~ip-~~---------------  349 (636)
T 4eco_A          289 --EQLKDDWQALADAPVGEKIQIIYIGYNNLK-TFPVETSLQKMKKLGMLECLYNQLEGKLP-AF---------------  349 (636)
T ss_dssp             --HHHHHHHHHHHHSGGGGTCCEEECCSSCCS-SCCCHHHHTTCTTCCEEECCSCCCEEECC-CC---------------
T ss_pred             --ccchHHHHhhhccccCCCCCEEECCCCcCC-ccCchhhhccCCCCCEEeCcCCcCccchh-hh---------------
Confidence              012222211    01356667777666544 5554   6666666666666654332332 21               


Q ss_pred             eccccchhhhcCCCCcCCcccEEEEecCc--chhhcCCCCCc-ccEEEEecCCcccccCCCccccceeccccchhhhhhc
Q 039689          433 FFVDICSKLQGTLPERLLLLEKLNIFRCE--QLLVTLQCLPA-LRELEIDGCKGVVLSSPTDLSSLKLVHSRDMAKEVFE  509 (763)
Q Consensus       433 ~l~~~~~~l~~~~~~~~~~L~~L~l~~~~--~l~~~l~~l~~-L~~L~l~~~~~~~~~~~~~L~~L~~~~~~~~~~~~~~  509 (763)
                                    ..+++|++|++++|.  .++..+..+++ |++|++++|....++.  .+.               .
T Consensus       350 --------------~~l~~L~~L~L~~N~l~~lp~~l~~l~~~L~~L~Ls~N~l~~lp~--~~~---------------~  398 (636)
T 4eco_A          350 --------------GSEIKLASLNLAYNQITEIPANFCGFTEQVENLSFAHNKLKYIPN--IFD---------------A  398 (636)
T ss_dssp             --------------EEEEEESEEECCSSEEEECCTTSEEECTTCCEEECCSSCCSSCCS--CCC---------------T
T ss_pred             --------------CCCCCCCEEECCCCccccccHhhhhhcccCcEEEccCCcCcccch--hhh---------------h
Confidence                          123445555555543  22334556777 8888888886543221  110               0


Q ss_pred             CCCCCCceEEEeccCCccccccccCcCCcccc--ccCceeeccCCchhhhcceeeeccCCCcccccchhhhcCCCCcceE
Q 039689          510 QGLPKLERLEIQHVREQTYLWRSETRLPQDIR--SLNRLQISRCPQLISLLRTVKIEDCNALESLPEAWMHNSNSSLESL  587 (763)
Q Consensus       510 ~~~~~L~~L~l~~~~~l~~l~~~~~~~p~~l~--~L~~L~l~~~~~l~~~L~~L~l~~~~~l~~l~~~~~~~~l~~L~~L  587 (763)
                      ..+++|++|++++|....       ..|..++  ....+....       |+.|++++ +.++.+|..++. .+++|++|
T Consensus       399 ~~l~~L~~L~Ls~N~l~~-------~~p~~l~~~~~~~~~~~~-------L~~L~Ls~-N~l~~lp~~~~~-~l~~L~~L  462 (636)
T 4eco_A          399 KSVSVMSAIDFSYNEIGS-------VDGKNFDPLDPTPFKGIN-------VSSINLSN-NQISKFPKELFS-TGSPLSSI  462 (636)
T ss_dssp             TCSSCEEEEECCSSCTTT-------TTTCSSCTTCSSCCCCCC-------EEEEECCS-SCCCSCCTHHHH-TTCCCSEE
T ss_pred             cccCccCEEECcCCcCCC-------cchhhhcccccccccCCC-------CCEEECcC-CccCcCCHHHHc-cCCCCCEE
Confidence            224578888888887654       3343333  000011111       55555655 566788877443 47899999


Q ss_pred             EEecCccccccCCC--CCC-------CCccEEEEccCCCCCCCchhhhcCCCCCcceEeeccCCCccccccccC-CCCCc
Q 039689          588 KIRSCNSLVSFPDF--ALP-------SQLRTVTIKGCDALESLPEAWMQNSSTSLESLAIDSCDSLTYIARIQL-PPSLK  657 (763)
Q Consensus       588 ~l~~c~~l~~~~~~--~~~-------~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~-~~~L~  657 (763)
                      ++++|. ++.+|..  ...       ++|++|++++| .++.+|..+....+++|+.|++++| .++.+|.... .++|+
T Consensus       463 ~Ls~N~-l~~i~~~~~~~~~~~~~~l~~L~~L~Ls~N-~l~~lp~~~~~~~l~~L~~L~Ls~N-~l~~ip~~~~~l~~L~  539 (636)
T 4eco_A          463 NLMGNM-LTEIPKNSLKDENENFKNTYLLTSIDLRFN-KLTKLSDDFRATTLPYLVGIDLSYN-SFSKFPTQPLNSSTLK  539 (636)
T ss_dssp             ECCSSC-CSBCCSSSSEETTEECTTGGGCCEEECCSS-CCCBCCGGGSTTTCTTCCEEECCSS-CCSSCCCGGGGCSSCC
T ss_pred             ECCCCC-CCCcCHHHhccccccccccCCccEEECcCC-cCCccChhhhhccCCCcCEEECCCC-CCCCcChhhhcCCCCC
Confidence            998866 4577752  222       28999999998 4558887762228899999999988 5655654321 33444


Q ss_pred             EEEEecCCCCCCCccceEEecCCCCCccccCC---CCCCcCeEeeccCCCCccccCCCCCCCCcCceecccCCCCccccC
Q 039689          658 RLIIFRCDNLRFNSLRKLKISGGCPDLVSSPR---FPASLTELKISDMPSLERLSSIGENLTSLKFLDLDNCPKLKYFSK  734 (763)
Q Consensus       658 ~L~l~~c~~l~~~~L~~L~l~~~~~~l~~~~~---~~~~L~~L~l~~~~~l~~ip~~~~~l~~L~~L~l~~c~~L~~l~~  734 (763)
                      .|+++++..+          ++ +.-...+|.   .+++|++|++++| .++.+|..+.  ++|++|++++|+ +..++.
T Consensus       540 ~L~Ls~N~~l----------s~-N~l~~~~p~~l~~l~~L~~L~Ls~N-~l~~ip~~~~--~~L~~L~Ls~N~-l~~~~~  604 (636)
T 4eco_A          540 GFGIRNQRDA----------QG-NRTLREWPEGITLCPSLTQLQIGSN-DIRKVNEKIT--PNISVLDIKDNP-NISIDL  604 (636)
T ss_dssp             EEECCSCBCT----------TC-CBCCCCCCTTGGGCSSCCEEECCSS-CCCBCCSCCC--TTCCEEECCSCT-TCEEEC
T ss_pred             EEECCCCccc----------cc-CcccccChHHHhcCCCCCEEECCCC-cCCccCHhHh--CcCCEEECcCCC-CccccH
Confidence            4444333211          11 111223443   4678999999995 5699997655  899999999985 555553


Q ss_pred             CCcc----------cccceeeeccChhHH
Q 039689          735 QGLP----------KSLLRLIIDECPLIE  753 (763)
Q Consensus       735 ~~~~----------~~L~~L~i~~C~~l~  753 (763)
                      .+..          ...+..+|.+||.|+
T Consensus       605 ~~~~~~~~~~~~~l~~~~~~~i~~C~~L~  633 (636)
T 4eco_A          605 SYVCPYIEAGMYMLFYDKTQDIRGCDALD  633 (636)
T ss_dssp             TTTHHHHHTTCCEEECCTTSEEESCGGGC
T ss_pred             HhcchhhhcccceeecCCccccCCCcccc
Confidence            2221          233556789999874

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=99.96  E-value=2.8e-28  Score=279.32  Aligned_cols=497  Identities=17%  Similarity=0.112  Sum_probs=280.3

Q ss_pred             CcccEEEecCCCCCccC-cccCCCCcccEEecCCCCchhcch-hhhhcccccEEeecccccccccccc-ccCcccccccc
Q 039689          197 PRLRVFSLRGYNIFELP-KAIENLKHLRFLDLSTTKIEILRE-SINTLYNLHTLLLEDCRRLKKLCKD-MGNLTKLHHLN  273 (763)
Q Consensus       197 ~~Lr~L~L~~~~i~~lp-~~~~~l~~L~~L~L~~~~i~~lp~-~~~~L~~L~~L~L~~~~~l~~lp~~-i~~L~~L~~L~  273 (763)
                      +.+++|||++|.|+.+| .+|.++++|++|+|++|.|+.+|+ +|++|++|++|+|++ +.+..+|.. |+++++|++|+
T Consensus        52 ~~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~-N~l~~l~~~~f~~L~~L~~L~  130 (635)
T 4g8a_A           52 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTG-NPIQSLALGAFSGLSSLQKLV  130 (635)
T ss_dssp             TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTT-CCCCEECGGGGTTCTTCCEEE
T ss_pred             cCCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccC-CcCCCCCHHHhcCCCCCCEEE
Confidence            47899999999999996 689999999999999999999864 689999999999999 478888765 89999999999


Q ss_pred             cCCccccccccc--CCCccCCCceeeecCcccccCccc-chhhhhcCcccccceEEeeccCCCCCCccHHHHhhcCCCCC
Q 039689          274 NSNVGSLEEMLM--LKSLVHLQGTLEISRLENVKGVGD-ASEVQLNSKVNLKALYLQWGVRDAVEPKTETQVIDMLKPHQ  350 (763)
Q Consensus       274 l~~~~~l~~l~~--l~~L~~L~~~L~~~~~~~~~~~~~-~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~l~~l~  350 (763)
                      +++|. +..++.  ++++++|+ .|.+.+..    +.. ..+..+..+++|+.|++++|.......    ..+..+....
T Consensus       131 Ls~N~-l~~l~~~~~~~L~~L~-~L~Ls~N~----l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~----~~l~~L~~l~  200 (635)
T 4g8a_A          131 AVETN-LASLENFPIGHLKTLK-ELNVAHNL----IQSFKLPEYFSNLTNLEHLDLSSNKIQSIYC----TDLRVLHQMP  200 (635)
T ss_dssp             CTTSC-CCCSTTCCCTTCTTCC-EEECCSSC----CCCCCCCGGGGGCTTCCEEECCSSCCCEECG----GGGHHHHTCT
T ss_pred             CCCCc-CCCCChhhhhcCcccC-eeccccCc----cccCCCchhhccchhhhhhcccCcccccccc----ccccchhhhh
Confidence            99998 888875  78888998 88876532    111 223467788999999998886543322    2233333333


Q ss_pred             Cc--eEEEeeeCCCCCCCccCCCCCCCceEEEEeccCCCCCCC--CCCCCCCCCcceecccCCceEeCccccCCCcCCCC
Q 039689          351 KL--ELTITGYGGTKFPIWLGDSLFSKLMLLKFDNCGTCTSLP--SVGQLPFLKDPVISGMGRVKIVGSEFYGSSCSVSF  426 (763)
Q Consensus       351 ~L--~L~~~~~~~~~~p~~~~~~~~~~L~~L~l~~~~~~~~l~--~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~f  426 (763)
                      ..  .+.+..+....++.....  ...+..+++.++.....+.  .+..++.++...+......................
T Consensus       201 ~~~~~~~ls~n~l~~i~~~~~~--~~~~~~l~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~~  278 (635)
T 4g8a_A          201 LLNLSLDLSLNPMNFIQPGAFK--EIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGL  278 (635)
T ss_dssp             TCCCEEECTTCCCCEECTTTTT--TCEEEEEEEESCCSSHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCTTTTGGG
T ss_pred             hhhhhhhcccCcccccCccccc--chhhhhhhhhcccccccccchhhcCCcccccccccccccccccccccccccccccc
Confidence            33  455555555555443322  3456667776653221111  23334444433332111100000000000000112


Q ss_pred             CCcceeeccccc-h-hhh--cCCCCcCCcccEEEEecCcchh-hcCCCCCcccEEEEecCCccccc--CCCccccceecc
Q 039689          427 PSLETLFFVDIC-S-KLQ--GTLPERLLLLEKLNIFRCEQLL-VTLQCLPALRELEIDGCKGVVLS--SPTDLSSLKLVH  499 (763)
Q Consensus       427 ~~L~~L~l~~~~-~-~l~--~~~~~~~~~L~~L~l~~~~~l~-~~l~~l~~L~~L~l~~~~~~~~~--~~~~L~~L~~~~  499 (763)
                      ..+....+.... . ...  ......+.+++.+.+.++.... ..+....+|+.|++.+|......  .+..++.+.+..
T Consensus       279 ~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~L~~l~l~~  358 (635)
T 4g8a_A          279 CNLTIEEFRLAYLDYYLDGIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQFPTLKLKSLKRLTFTS  358 (635)
T ss_dssp             GGSEEEEEEEECCCSCEEECTTTTGGGTTCSEEEEESCEEEECGGGGSCCCCSEEEEESCEESSCCCCBCTTCCEEEEES
T ss_pred             cchhhhhhhhhhhcccccchhhhhhhhcccccccccccccccccccccchhhhhhhcccccccCcCcccchhhhhccccc
Confidence            222222222110 0 000  0112344566666666654221 12344556777777766433221  122222222222


Q ss_pred             ccchhhhhhcCCCCCCceEEEeccCCccccccccCcCC---ccccccCceeeccCCchhhhcceeeeccCCCcccccchh
Q 039689          500 SRDMAKEVFEQGLPKLERLEIQHVREQTYLWRSETRLP---QDIRSLNRLQISRCPQLISLLRTVKIEDCNALESLPEAW  576 (763)
Q Consensus       500 ~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~p---~~l~~L~~L~l~~~~~l~~~L~~L~l~~~~~l~~l~~~~  576 (763)
                      ...... .....+++|+.+++++|......     ..+   ....+               |+.+++..+ ....++..+
T Consensus       359 n~~~~~-~~~~~l~~L~~L~ls~n~l~~~~-----~~~~~~~~~~~---------------L~~L~~~~~-~~~~~~~~~  416 (635)
T 4g8a_A          359 NKGGNA-FSEVDLPSLEFLDLSRNGLSFKG-----CCSQSDFGTIS---------------LKYLDLSFN-GVITMSSNF  416 (635)
T ss_dssp             CCSCCB-CCCCBCTTCCEEECCSSCCBEEE-----ECCHHHHSCSC---------------CCEEECCSC-SEEEECSCC
T ss_pred             ccCCCC-cccccccccccchhhcccccccc-----ccccchhhhhh---------------hhhhhcccc-ccccccccc
Confidence            211100 01123455555555555432110     111   11222               444444442 223333332


Q ss_pred             hhcCCCCcceEEEecCccccccCC--CCCCCCccEEEEccCCCCCCCchhhhcCCCCCcceEeeccCCCccccccccCCC
Q 039689          577 MHNSNSSLESLKIRSCNSLVSFPD--FALPSQLRTVTIKGCDALESLPEAWMQNSSTSLESLAIDSCDSLTYIARIQLPP  654 (763)
Q Consensus       577 ~~~~l~~L~~L~l~~c~~l~~~~~--~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~  654 (763)
                      .  .+++|+.+++.+++.....+.  +..+++++.+++++|......+..+  ..+++|+.|++++|.....+....+. 
T Consensus       417 ~--~l~~L~~l~l~~~~~~~~~~~~~~~~l~~l~~l~ls~n~l~~~~~~~~--~~~~~L~~L~Ls~N~~~~~~~~~~~~-  491 (635)
T 4g8a_A          417 L--GLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIF--NGLSSLEVLKMAGNSFQENFLPDIFT-  491 (635)
T ss_dssp             T--TCTTCCEEECTTSEEESTTSSCTTTTCTTCCEEECTTSCCEECCTTTT--TTCTTCCEEECTTCEEGGGEECSCCT-
T ss_pred             c--ccccccchhhhhcccccccccccccccccccccccccccccccccccc--ccchhhhhhhhhhcccccccCchhhh-
Confidence            2  267777777766655444332  4556777777777774444444444  66777777777777544444333221 


Q ss_pred             CCcEEEEecCCCCCCCccceEEecCCCCCccccCC----CCCCcCeEeeccCCCCccccCC-CCCCCCcCceecccCCCC
Q 039689          655 SLKRLIIFRCDNLRFNSLRKLKISGGCPDLVSSPR----FPASLTELKISDMPSLERLSSI-GENLTSLKFLDLDNCPKL  729 (763)
Q Consensus       655 ~L~~L~l~~c~~l~~~~L~~L~l~~~~~~l~~~~~----~~~~L~~L~l~~~~~l~~ip~~-~~~l~~L~~L~l~~c~~L  729 (763)
                                   .+++|+.|++++  +.+..++.    .+++|++|+|++ ++++.++.. +..+++|++|++++| ++
T Consensus       492 -------------~l~~L~~L~Ls~--N~L~~l~~~~f~~l~~L~~L~Ls~-N~l~~l~~~~~~~l~~L~~L~Ls~N-~l  554 (635)
T 4g8a_A          492 -------------ELRNLTFLDLSQ--CQLEQLSPTAFNSLSSLQVLNMSH-NNFFSLDTFPYKCLNSLQVLDYSLN-HI  554 (635)
T ss_dssp             -------------TCTTCCEEECTT--SCCCEECTTTTTTCTTCCEEECTT-SCCCBCCCGGGTTCTTCCEEECTTS-CC
T ss_pred             -------------hccccCEEECCC--CccCCcChHHHcCCCCCCEEECCC-CcCCCCChhHHhCCCCCCEEECCCC-cC
Confidence                         345666666665  34555543    467888999988 577777654 478889999999885 67


Q ss_pred             ccccCC---CcccccceeeeccCh
Q 039689          730 KYFSKQ---GLPKSLLRLIIDECP  750 (763)
Q Consensus       730 ~~l~~~---~~~~~L~~L~i~~C~  750 (763)
                      +.++..   .++++|+.|+++++|
T Consensus       555 ~~~~~~~l~~l~~~L~~L~L~~Np  578 (635)
T 4g8a_A          555 MTSKKQELQHFPSSLAFLNLTQND  578 (635)
T ss_dssp             CBCCSSCTTCCCTTCCEEECTTCC
T ss_pred             CCCCHHHHHhhhCcCCEEEeeCCC
Confidence            777653   345789999987643

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=99.96  E-value=1.1e-28  Score=267.48  Aligned_cols=388  Identities=23%  Similarity=0.225  Sum_probs=167.6

Q ss_pred             CCCcccEEEecCCCCCccCcccCCCCcccEEecCCCCch-hcchhhhhcccc-------------cEEeecccccccccc
Q 039689          195 NLPRLRVFSLRGYNIFELPKAIENLKHLRFLDLSTTKIE-ILRESINTLYNL-------------HTLLLEDCRRLKKLC  260 (763)
Q Consensus       195 ~l~~Lr~L~L~~~~i~~lp~~~~~l~~L~~L~L~~~~i~-~lp~~~~~L~~L-------------~~L~L~~~~~l~~lp  260 (763)
                      ..++|++|++++|.++.+|.+|+++++|++|++++|.+. .+|.+++++.+|             ++|++++| .+..+|
T Consensus         9 ~~~~L~~L~l~~n~l~~iP~~i~~L~~L~~L~l~~n~~~~~~p~~~~~l~~L~~l~l~~c~~~~l~~L~l~~~-~l~~lp   87 (454)
T 1jl5_A            9 SNTFLQEPLRHSSNLTEMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLDRQAHELELNNL-GLSSLP   87 (454)
T ss_dssp             -------------------------CCHHHHHHHHHHHHHTSCTTSCCCHHHHHHHHHHHHHHTCSEEECTTS-CCSCCC
T ss_pred             ccccchhhhcccCchhhCChhHhcccchhhhhccCCcccccCCcccccchhcchhhhhhhhccCCCEEEecCC-ccccCC
Confidence            357888888888888888888888888888888888877 678888888776             44444442 344443


Q ss_pred             ccccCcccccccccCCcccccccccCCCccCCCceeeecCcccccCcccchhhhhcCcccccceEEeeccCCCCCCccHH
Q 039689          261 KDMGNLTKLHHLNNSNVGSLEEMLMLKSLVHLQGTLEISRLENVKGVGDASEVQLNSKVNLKALYLQWGVRDAVEPKTET  340 (763)
Q Consensus       261 ~~i~~L~~L~~L~l~~~~~l~~l~~l~~L~~L~~~L~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~  340 (763)
                      ..   .++|++|++++|. ++.+|.                               ..++|+.|++++|           
T Consensus        88 ~~---~~~L~~L~l~~n~-l~~lp~-------------------------------~~~~L~~L~l~~n-----------  121 (454)
T 1jl5_A           88 EL---PPHLESLVASCNS-LTELPE-------------------------------LPQSLKSLLVDNN-----------  121 (454)
T ss_dssp             SC---CTTCSEEECCSSC-CSSCCC-------------------------------CCTTCCEEECCSS-----------
T ss_pred             CC---cCCCCEEEccCCc-CCcccc-------------------------------ccCCCcEEECCCC-----------
Confidence            31   2344444444443 222221                               0124444444333           


Q ss_pred             HHhhcCCCCCCceEEEeeeCCCCCCCccCCCCCCCceEEEEeccCCCCCCCCCCCCCCCCcceecccCCceEeCccccCC
Q 039689          341 QVIDMLKPHQKLELTITGYGGTKFPIWLGDSLFSKLMLLKFDNCGTCTSLPSVGQLPFLKDPVISGMGRVKIVGSEFYGS  420 (763)
Q Consensus       341 ~~l~~l~~l~~L~L~~~~~~~~~~p~~~~~~~~~~L~~L~l~~~~~~~~l~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~  420 (763)
                                         ....+|..     .++|++|++++|... .+|.++.+++|++|+++++.... ++      
T Consensus       122 -------------------~l~~l~~~-----~~~L~~L~L~~n~l~-~lp~~~~l~~L~~L~l~~N~l~~-lp------  169 (454)
T 1jl5_A          122 -------------------NLKALSDL-----PPLLEYLGVSNNQLE-KLPELQNSSFLKIIDVDNNSLKK-LP------  169 (454)
T ss_dssp             -------------------CCSCCCSC-----CTTCCEEECCSSCCS-SCCCCTTCTTCCEEECCSSCCSC-CC------
T ss_pred             -------------------ccCcccCC-----CCCCCEEECcCCCCC-CCcccCCCCCCCEEECCCCcCcc-cC------
Confidence                               23333321     257788888877543 46677777788888887754321 11      


Q ss_pred             CcCCCCCCcceeeccccchhhhcCCC--CcCCcccEEEEecCcchhhcCCCCCcccEEEEecCCcccccCCCccccceec
Q 039689          421 SCSVSFPSLETLFFVDICSKLQGTLP--ERLLLLEKLNIFRCEQLLVTLQCLPALRELEIDGCKGVVLSSPTDLSSLKLV  498 (763)
Q Consensus       421 ~~~~~f~~L~~L~l~~~~~~l~~~~~--~~~~~L~~L~l~~~~~l~~~l~~l~~L~~L~l~~~~~~~~~~~~~L~~L~~~  498 (763)
                         ..+++|++|++.+  +.+.+ +|  ..+++|+.|++.+|.... .....++|++|++++|....++.          
T Consensus       170 ---~~~~~L~~L~L~~--n~l~~-l~~~~~l~~L~~L~l~~N~l~~-l~~~~~~L~~L~l~~n~l~~lp~----------  232 (454)
T 1jl5_A          170 ---DLPPSLEFIAAGN--NQLEE-LPELQNLPFLTAIYADNNSLKK-LPDLPLSLESIVAGNNILEELPE----------  232 (454)
T ss_dssp             ---CCCTTCCEEECCS--SCCSS-CCCCTTCTTCCEEECCSSCCSS-CCCCCTTCCEEECCSSCCSSCCC----------
T ss_pred             ---CCcccccEEECcC--CcCCc-CccccCCCCCCEEECCCCcCCc-CCCCcCcccEEECcCCcCCcccc----------
Confidence               1134677777665  23322 22  245566666666654211 11123456666666664332221          


Q ss_pred             cccchhhhhhcCCCCCCceEEEeccCCccccccccCcCCccccccCceeeccCCchhhhcceeeeccCCCcccccchhhh
Q 039689          499 HSRDMAKEVFEQGLPKLERLEIQHVREQTYLWRSETRLPQDIRSLNRLQISRCPQLISLLRTVKIEDCNALESLPEAWMH  578 (763)
Q Consensus       499 ~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~p~~l~~L~~L~l~~~~~l~~~L~~L~l~~~~~l~~l~~~~~~  578 (763)
                                +..+++|++|++++|...        .+|..+++|+.|++++                +.++.+|..   
T Consensus       233 ----------~~~l~~L~~L~l~~N~l~--------~l~~~~~~L~~L~l~~----------------N~l~~l~~~---  275 (454)
T 1jl5_A          233 ----------LQNLPFLTTIYADNNLLK--------TLPDLPPSLEALNVRD----------------NYLTDLPEL---  275 (454)
T ss_dssp             ----------CTTCTTCCEEECCSSCCS--------SCCSCCTTCCEEECCS----------------SCCSCCCCC---
T ss_pred             ----------cCCCCCCCEEECCCCcCC--------cccccccccCEEECCC----------------CcccccCcc---
Confidence                      245677777777776532        3444444555544444                345555543   


Q ss_pred             cCCCCcceEEEecCccccccCCCCCCCCccEEEEccCCCCCCCchhhhcCCCCCcceEeeccCCCccccccccCCCCCcE
Q 039689          579 NSNSSLESLKIRSCNSLVSFPDFALPSQLRTVTIKGCDALESLPEAWMQNSSTSLESLAIDSCDSLTYIARIQLPPSLKR  658 (763)
Q Consensus       579 ~~l~~L~~L~l~~c~~l~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~L~~  658 (763)
                        +++|++|++++|. ++.+|.  .+++|++|++++|. +..++.     ..++|+.|++++| .++.+|..  ++    
T Consensus       276 --~~~L~~L~ls~N~-l~~l~~--~~~~L~~L~l~~N~-l~~i~~-----~~~~L~~L~Ls~N-~l~~lp~~--~~----  337 (454)
T 1jl5_A          276 --PQSLTFLDVSENI-FSGLSE--LPPNLYYLNASSNE-IRSLCD-----LPPSLEELNVSNN-KLIELPAL--PP----  337 (454)
T ss_dssp             --CTTCCEEECCSSC-CSEESC--CCTTCCEEECCSSC-CSEECC-----CCTTCCEEECCSS-CCSCCCCC--CT----
T ss_pred             --cCcCCEEECcCCc-cCcccC--cCCcCCEEECcCCc-CCcccC-----CcCcCCEEECCCC-cccccccc--CC----
Confidence              3566666666544 344442  23566666666663 333221     1246666666665 44444321  23    


Q ss_pred             EEEecCCCCCCCccceEEecCCCCCccccCCCCCCcCeEeeccCCCCc--cccCCCCCC-------------CCcCceec
Q 039689          659 LIIFRCDNLRFNSLRKLKISGGCPDLVSSPRFPASLTELKISDMPSLE--RLSSIGENL-------------TSLKFLDL  723 (763)
Q Consensus       659 L~l~~c~~l~~~~L~~L~l~~~~~~l~~~~~~~~~L~~L~l~~~~~l~--~ip~~~~~l-------------~~L~~L~l  723 (763)
                                  +|+.|++++  +.+..+|..+++|++|++++|....  .+|..+..+             ++|++|++
T Consensus       338 ------------~L~~L~L~~--N~l~~lp~~l~~L~~L~L~~N~l~~l~~ip~~l~~L~~n~~~~~i~~~~~~L~~L~l  403 (454)
T 1jl5_A          338 ------------RLERLIASF--NHLAEVPELPQNLKQLHVEYNPLREFPDIPESVEDLRMNSHLAEVPELPQNLKQLHV  403 (454)
T ss_dssp             ------------TCCEEECCS--SCCSCCCCCCTTCCEEECCSSCCSSCCCCCTTCCEEECCC-----------------
T ss_pred             ------------cCCEEECCC--CccccccchhhhccEEECCCCCCCcCCCChHHHHhhhhcccccccccccCcCCEEEC
Confidence                        333444433  2333444444556666666533222  344444443             88999999


Q ss_pred             ccCCCCccccCCCcccccceeeeccCh
Q 039689          724 DNCPKLKYFSKQGLPKSLLRLIIDECP  750 (763)
Q Consensus       724 ~~c~~L~~l~~~~~~~~L~~L~i~~C~  750 (763)
                      +++ .++.++.  +|++++.|++.+|.
T Consensus       404 s~N-~l~~~~~--iP~sl~~L~~~~~~  427 (454)
T 1jl5_A          404 ETN-PLREFPD--IPESVEDLRMNSER  427 (454)
T ss_dssp             ---------------------------
T ss_pred             CCC-cCCcccc--chhhHhheeCcCcc
Confidence            996 5666544  77889999988764

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=99.96  E-value=1.8e-28  Score=282.31  Aligned_cols=375  Identities=17%  Similarity=0.180  Sum_probs=194.1

Q ss_pred             CcccEEEecCCCCC-ccCcccCCCCcccEEec-CCCCch-----------------------------------------
Q 039689          197 PRLRVFSLRGYNIF-ELPKAIENLKHLRFLDL-STTKIE-----------------------------------------  233 (763)
Q Consensus       197 ~~Lr~L~L~~~~i~-~lp~~~~~l~~L~~L~L-~~~~i~-----------------------------------------  233 (763)
                      .++..|+|+++.+. .+|++|+.|++|++|+| ++|.+.                                         
T Consensus       323 ~~V~~L~Ls~~~L~G~ip~~l~~L~~L~~LdLss~N~lsG~~~~~~~~~~~~l~~~~l~~lr~~~~~~~l~~~~~~~~s~  402 (876)
T 4ecn_A          323 GRVTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSD  402 (876)
T ss_dssp             SCEEEEECTTTCCEEEECGGGGGCTTCCEEESCCTTHHHHTTCBTTBCCCSSCCHHHHHHHHTHHHHHHTCCCGGGGSCH
T ss_pred             CCEEEEECccCCCCCcCchHHhccccceEeeecccccccccccccccccccccchhHHHHHHHhhhhhhhccCcchhhhH
Confidence            56788888888876 46888888888888888 655432                                         


Q ss_pred             ------------------------------------hcchhhhhcccccEEeecccccccc------------------c
Q 039689          234 ------------------------------------ILRESINTLYNLHTLLLEDCRRLKK------------------L  259 (763)
Q Consensus       234 ------------------------------------~lp~~~~~L~~L~~L~L~~~~~l~~------------------l  259 (763)
                                                          .+|.+|++|++|++|+|++| .+..                  +
T Consensus       403 l~~~~l~~~~~~~~i~~~~~l~l~~l~l~~~~N~L~~IP~~l~~L~~L~~L~Ls~N-~Lsg~~i~~~~~~~s~n~~~g~i  481 (876)
T 4ecn_A          403 LLQDAINRNPEMKPIKKDSRISLKDTQIGNLTNRITFISKAIQRLTKLQIIYFANS-PFTYDNIAVDWEDANSDYAKQYE  481 (876)
T ss_dssp             HHHHHHHTCTTSCCCCCCCCCCCCTTTTTCCSCEEEEECGGGGGCTTCCEEEEESC-CCCGGGBSSSCSCTTSHHHHHHT
T ss_pred             HHHHHhhhCccccccccccccchhhceeccccCcccchhHHHhcCCCCCEEECcCC-cCCCCcccccccccccccccccC
Confidence                                                25555566666666666653 3333                  5


Q ss_pred             ccccc--CcccccccccCCcccccccccCCCccCCCceeeecCcccccCcccchhhhhcCcccccceEEeecc-CCC-CC
Q 039689          260 CKDMG--NLTKLHHLNNSNVGSLEEMLMLKSLVHLQGTLEISRLENVKGVGDASEVQLNSKVNLKALYLQWGV-RDA-VE  335 (763)
Q Consensus       260 p~~i~--~L~~L~~L~l~~~~~l~~l~~l~~L~~L~~~L~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~-~~~-~~  335 (763)
                      |+.++  ++++|++|++++|.....+|                            ..+.++++|+.|++++|. ... ..
T Consensus       482 P~~l~f~~L~~L~~L~Ls~N~l~~~iP----------------------------~~l~~L~~L~~L~Ls~N~~lsg~~i  533 (876)
T 4ecn_A          482 NEELSWSNLKDLTDVELYNCPNMTQLP----------------------------DFLYDLPELQSLNIACNRGISAAQL  533 (876)
T ss_dssp             TSCCCGGGCTTCCEEEEESCTTCCSCC----------------------------GGGGGCSSCCEEECTTCTTSCHHHH
T ss_pred             ChhhhhccCCCCCEEECcCCCCCccCh----------------------------HHHhCCCCCCEEECcCCCCcccccc
Confidence            55555  56666666665554233333                            344555556666665542 211 00


Q ss_pred             CccHHHHhh-cCCCCCCc-eEEEeeeCCCCCCC--ccCCCCCCCceEEEEeccCCCCCCCCCCCCCCCCcceecccCCce
Q 039689          336 PKTETQVID-MLKPHQKL-ELTITGYGGTKFPI--WLGDSLFSKLMLLKFDNCGTCTSLPSVGQLPFLKDPVISGMGRVK  411 (763)
Q Consensus       336 ~~~~~~~l~-~l~~l~~L-~L~~~~~~~~~~p~--~~~~~~~~~L~~L~l~~~~~~~~l~~l~~l~~L~~L~l~~~~~l~  411 (763)
                      +. ....+. .+..++.| .|.+.++....+|.  ++..  +++|+.|++++|... .+|.++.+++|+.|++++|... 
T Consensus       534 P~-~i~~L~~~~~~l~~L~~L~Ls~N~L~~ip~~~~l~~--L~~L~~L~Ls~N~l~-~lp~~~~L~~L~~L~Ls~N~l~-  608 (876)
T 4ecn_A          534 KA-DWTRLADDEDTGPKIQIFYMGYNNLEEFPASASLQK--MVKLGLLDCVHNKVR-HLEAFGTNVKLTDLKLDYNQIE-  608 (876)
T ss_dssp             HH-HHHHHHHCTTTTTTCCEEECCSSCCCBCCCHHHHTT--CTTCCEEECTTSCCC-BCCCCCTTSEESEEECCSSCCS-
T ss_pred             hH-HHHhhhhcccccCCccEEEeeCCcCCccCChhhhhc--CCCCCEEECCCCCcc-cchhhcCCCcceEEECcCCccc-
Confidence            00 001111 33444455 66666666667777  6665  788888888888654 7777888888888888876543 


Q ss_pred             EeCccccCCCcCCCCCC-cceeeccccchhhhcCCCCcC-----CcccEEEEecCcchh------hcCC--CCCcccEEE
Q 039689          412 IVGSEFYGSSCSVSFPS-LETLFFVDICSKLQGTLPERL-----LLLEKLNIFRCEQLL------VTLQ--CLPALRELE  477 (763)
Q Consensus       412 ~~~~~~~~~~~~~~f~~-L~~L~l~~~~~~l~~~~~~~~-----~~L~~L~l~~~~~l~------~~l~--~l~~L~~L~  477 (763)
                      .++..+      ..+++ |+.|++.+  +.+. .+|..+     ++|+.|++++|....      ..+.  .+++|++|+
T Consensus       609 ~lp~~l------~~l~~~L~~L~Ls~--N~L~-~lp~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~  679 (876)
T 4ecn_A          609 EIPEDF------CAFTDQVEGLGFSH--NKLK-YIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVT  679 (876)
T ss_dssp             CCCTTS------CEECTTCCEEECCS--SCCC-SCCSCCCTTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEE
T ss_pred             cchHHH------hhccccCCEEECcC--CCCC-cCchhhhccccCCCCEEECcCCcCCCccccchhhhccccCCCcCEEE
Confidence            333222      22556 77777776  2333 344322     225556665553211      0011  223566666


Q ss_pred             EecCCcccccCCCccccceeccccchhhhhhcCCCCCCceEEEeccCCccccccccCcCCccccccCceeeccCCchhhh
Q 039689          478 IDGCKGVVLSSPTDLSSLKLVHSRDMAKEVFEQGLPKLERLEIQHVREQTYLWRSETRLPQDIRSLNRLQISRCPQLISL  557 (763)
Q Consensus       478 l~~~~~~~~~~~~~L~~L~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~p~~l~~L~~L~l~~~~~l~~~  557 (763)
                      +++|....                  .+...+..+++|+.|++++|...        .+|........-.+.+|+.    
T Consensus       680 Ls~N~L~~------------------lp~~~~~~l~~L~~L~Ls~N~L~--------~ip~~~~~~~~~~l~nl~~----  729 (876)
T 4ecn_A          680 LSYNEIQK------------------FPTELFATGSPISTIILSNNLMT--------SIPENSLKPKDGNYKNTYL----  729 (876)
T ss_dssp             CCSSCCCS------------------CCHHHHHTTCCCSEEECCSCCCS--------CCCTTSSSCTTSCCTTGGG----
T ss_pred             ccCCcCCc------------------cCHHHHccCCCCCEEECCCCcCC--------ccChHHhccccccccccCC----
Confidence            66554331                  11122234566666666666432        2221111000000000001    


Q ss_pred             cceeeeccCCCcccccchhhhcCCCCcceEEEecCccccccCC-CCCCCCccEEEEcc------CCCCCCCchhhhcCCC
Q 039689          558 LRTVKIEDCNALESLPEAWMHNSNSSLESLKIRSCNSLVSFPD-FALPSQLRTVTIKG------CDALESLPEAWMQNSS  630 (763)
Q Consensus       558 L~~L~l~~~~~l~~l~~~~~~~~l~~L~~L~l~~c~~l~~~~~-~~~~~~L~~L~l~~------~~~l~~~~~~~~~~~l  630 (763)
                      |+.|++++ +.++.+|..+....+++|+.|++++|. +..+|. +..+++|+.|++++      |...+.+|..+  ..+
T Consensus       730 L~~L~Ls~-N~L~~lp~~l~~~~l~~L~~L~Ls~N~-L~~lp~~l~~L~~L~~L~Ls~N~~ls~N~l~~~ip~~l--~~L  805 (876)
T 4ecn_A          730 LTTIDLRF-NKLTSLSDDFRATTLPYLSNMDVSYNC-FSSFPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGI--TTC  805 (876)
T ss_dssp             CCEEECCS-SCCCCCCGGGSTTTCTTCCEEECCSSC-CSSCCCGGGGCTTCCEEECCCCBCTTCCBCCCCCCTTG--GGC
T ss_pred             ccEEECCC-CCCccchHHhhhccCCCcCEEEeCCCC-CCccchhhhcCCCCCEEECCCCCCcccccccccChHHH--hcC
Confidence            33444444 344455555331235666666665544 333443 44556666666654      33344555554  456


Q ss_pred             CCcceEeeccCCCcccccc
Q 039689          631 TSLESLAIDSCDSLTYIAR  649 (763)
Q Consensus       631 ~~L~~L~l~~c~~l~~l~~  649 (763)
                      ++|+.|++++| .++.+|.
T Consensus       806 ~~L~~L~Ls~N-~L~~Ip~  823 (876)
T 4ecn_A          806 PSLIQLQIGSN-DIRKVDE  823 (876)
T ss_dssp             SSCCEEECCSS-CCCBCCS
T ss_pred             CCCCEEECCCC-CCCccCH
Confidence            66666666665 3344443

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=99.96  E-value=2.5e-27  Score=266.22  Aligned_cols=430  Identities=19%  Similarity=0.143  Sum_probs=239.2

Q ss_pred             CcccEEEecCCCCCccCcccCCCCcccEEecCCCCchhcc-hhhhhcccccEEeeccccccccc-cccccCccccccccc
Q 039689          197 PRLRVFSLRGYNIFELPKAIENLKHLRFLDLSTTKIEILR-ESINTLYNLHTLLLEDCRRLKKL-CKDMGNLTKLHHLNN  274 (763)
Q Consensus       197 ~~Lr~L~L~~~~i~~lp~~~~~l~~L~~L~L~~~~i~~lp-~~~~~L~~L~~L~L~~~~~l~~l-p~~i~~L~~L~~L~l  274 (763)
                      ...++++++++.++.+|..+.  ++|++|+|++|.++.+| .+|+++++|++|++++| .+..+ |..|+++++|++|++
T Consensus        31 ~~~~~l~ls~~~L~~ip~~~~--~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~L  107 (562)
T 3a79_B           31 ELESMVDYSNRNLTHVPKDLP--PRTKALSLSQNSISELRMPDISFLSELRVLRLSHN-RIRSLDFHVFLFNQDLEYLDV  107 (562)
T ss_dssp             --CCEEECTTSCCCSCCTTSC--TTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSC-CCCEECTTTTTTCTTCCEEEC
T ss_pred             CCCcEEEcCCCCCccCCCCCC--CCcCEEECCCCCccccChhhhccCCCccEEECCCC-CCCcCCHHHhCCCCCCCEEEC
Confidence            344788888888888887664  78888888888888775 57888888888888884 55555 556888888888888


Q ss_pred             CCcccccccccCCCccCCCceeeecCcccccCcccchhhhhcCcccccceEEeeccCCCCCCccHHHHhhcCCCCCCceE
Q 039689          275 SNVGSLEEMLMLKSLVHLQGTLEISRLENVKGVGDASEVQLNSKVNLKALYLQWGVRDAVEPKTETQVIDMLKPHQKLEL  354 (763)
Q Consensus       275 ~~~~~l~~l~~l~~L~~L~~~L~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~l~~l~~L~L  354 (763)
                      ++|. +..+|.. .+++|+                             .|++++|.....                    
T Consensus       108 s~N~-l~~lp~~-~l~~L~-----------------------------~L~Ls~N~l~~l--------------------  136 (562)
T 3a79_B          108 SHNR-LQNISCC-PMASLR-----------------------------HLDLSFNDFDVL--------------------  136 (562)
T ss_dssp             TTSC-CCEECSC-CCTTCS-----------------------------EEECCSSCCSBC--------------------
T ss_pred             CCCc-CCccCcc-ccccCC-----------------------------EEECCCCCcccc--------------------
Confidence            8887 6666543 344444                             333333211100                    


Q ss_pred             EEeeeCCCCCCCccCCCCCCCceEEEEeccCCCCCCCCCCCCCCC--CcceecccCC--ceEeCccccCCCcCCCCCCcc
Q 039689          355 TITGYGGTKFPIWLGDSLFSKLMLLKFDNCGTCTSLPSVGQLPFL--KDPVISGMGR--VKIVGSEFYGSSCSVSFPSLE  430 (763)
Q Consensus       355 ~~~~~~~~~~p~~~~~~~~~~L~~L~l~~~~~~~~l~~l~~l~~L--~~L~l~~~~~--l~~~~~~~~~~~~~~~f~~L~  430 (763)
                              ..|..+..  +++|+.|++++|....  ..+..+++|  +.|+++++..  ......         .|+.+.
T Consensus       137 --------~~p~~~~~--l~~L~~L~L~~n~l~~--~~~~~l~~L~L~~L~L~~n~l~~~~~~~~---------~l~~l~  195 (562)
T 3a79_B          137 --------PVCKEFGN--LTKLTFLGLSAAKFRQ--LDLLPVAHLHLSCILLDLVSYHIKGGETE---------SLQIPN  195 (562)
T ss_dssp             --------CCCGGGGG--CTTCCEEEEECSBCCT--TTTGGGTTSCEEEEEEEESSCCCCSSSCC---------EEEECC
T ss_pred             --------CchHhhcc--cCcccEEecCCCcccc--CchhhhhhceeeEEEeecccccccccCcc---------cccccC
Confidence                    01122222  3444444444443211  122222222  4444444322  111110         111111


Q ss_pred             --ee--eccccchhhhcCCC----CcCCcccEEEEecCc----ch---hhcCCCCCcccEEEEecCCcccccCCCccccc
Q 039689          431 --TL--FFVDICSKLQGTLP----ERLLLLEKLNIFRCE----QL---LVTLQCLPALRELEIDGCKGVVLSSPTDLSSL  495 (763)
Q Consensus       431 --~L--~l~~~~~~l~~~~~----~~~~~L~~L~l~~~~----~l---~~~l~~l~~L~~L~l~~~~~~~~~~~~~L~~L  495 (763)
                        .+  ++.+  +.+.+.++    ..+++|+.+++.++.    .+   ...+..+++|+.+++.++.....         
T Consensus       196 ~~~l~l~l~~--n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~l~~~~~~l~~l~~L~~L~L~~~~l~~~---------  264 (562)
T 3a79_B          196 TTVLHLVFHP--NSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWK---------  264 (562)
T ss_dssp             EEEEEEEECS--SSCCCCCCEEEESSEEEEEEEEEECCSTTHHHHHHHHHHHHSCSSCEEEEEEEEEECHH---------
T ss_pred             cceEEEEecC--ccchhhhhhhcccccceEEEecccccccccchHHHHHHHHhccCcceEEEecCCcCcHH---------
Confidence              11  2221  12222222    245677777777653    11   12345677777777776532210         


Q ss_pred             eeccccchhhhhhcCCCCCCceEEEeccCCccccccccCcCCccc-----cccCceeeccCCc---------hhh-----
Q 039689          496 KLVHSRDMAKEVFEQGLPKLERLEIQHVREQTYLWRSETRLPQDI-----RSLNRLQISRCPQ---------LIS-----  556 (763)
Q Consensus       496 ~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~p~~l-----~~L~~L~l~~~~~---------l~~-----  556 (763)
                           ....... ....++|++|++++|....       .+|..+     ++|+.|.+.++..         +..     
T Consensus       265 -----~~~~~~~-~~~~~~L~~L~l~~n~l~~-------~ip~~~~~~~~~~L~~L~~~~~~~~~~~~p~~~~~~~~~~~  331 (562)
T 3a79_B          265 -----CSVKLFQ-FFWPRPVEYLNIYNLTITE-------RIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEM  331 (562)
T ss_dssp             -----HHHHHHH-HHTTSSEEEEEEEEEEECS-------CCCCCCCCCCSCSCCEEEEEEEEECCCSSCHHHHHHHHHTC
T ss_pred             -----HHHHHHH-hhhcccccEEEEeccEeec-------cccchhhhcccccchheehhhcccceeecChhhhhhhhccC
Confidence                 0000000 1223588888888886543       344333     5555554433211         001     


Q ss_pred             hcceeeeccCCCcccccchhhhcCCCCcceEEEecCccccccCC-CCCCCCccEEEEccCCCCCCCc---hhhhcCCCCC
Q 039689          557 LLRTVKIEDCNALESLPEAWMHNSNSSLESLKIRSCNSLVSFPD-FALPSQLRTVTIKGCDALESLP---EAWMQNSSTS  632 (763)
Q Consensus       557 ~L~~L~l~~~~~l~~l~~~~~~~~l~~L~~L~l~~c~~l~~~~~-~~~~~~L~~L~l~~~~~l~~~~---~~~~~~~l~~  632 (763)
                      .|++|++++|. +..++.   ...+++|++|++++|.....+|. +..+++|++|++++| .++.++   ..+  ..+++
T Consensus       332 ~L~~L~l~~n~-~~~~~~---~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~--~~l~~  404 (562)
T 3a79_B          332 NIKMLSISDTP-FIHMVC---PPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRN-GLKNFFKVALMT--KNMSS  404 (562)
T ss_dssp             CCSEEEEESSC-CCCCCC---CSSCCCCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSS-CCCBTTHHHHTT--TTCTT
T ss_pred             cceEEEccCCC-cccccC---ccCCCCceEEECCCCccccchhhhhcccCCCCEEECCCC-CcCCcccchhhh--cCCCC
Confidence            16667777654 222221   02367777888777654443443 566677788888777 444433   333  66777


Q ss_pred             cceEeeccCCCccc-cccccCCCCCcEEEEecCCCCCCCccceEEecCCCCCccccCCCC-CCcCeEeeccCCCCccccC
Q 039689          633 LESLAIDSCDSLTY-IARIQLPPSLKRLIIFRCDNLRFNSLRKLKISGGCPDLVSSPRFP-ASLTELKISDMPSLERLSS  710 (763)
Q Consensus       633 L~~L~l~~c~~l~~-l~~~~~~~~L~~L~l~~c~~l~~~~L~~L~l~~~~~~l~~~~~~~-~~L~~L~l~~~~~l~~ip~  710 (763)
                      |+.|++++| .++. +|...+.              .+++|+.|++++ +.-...+|..+ ++|++|++++ +.++.+|.
T Consensus       405 L~~L~l~~N-~l~~~~~~~~~~--------------~l~~L~~L~l~~-n~l~~~~~~~l~~~L~~L~L~~-N~l~~ip~  467 (562)
T 3a79_B          405 LETLDVSLN-SLNSHAYDRTCA--------------WAESILVLNLSS-NMLTGSVFRCLPPKVKVLDLHN-NRIMSIPK  467 (562)
T ss_dssp             CCEEECTTS-CCBSCCSSCCCC--------------CCTTCCEEECCS-SCCCGGGGSSCCTTCSEEECCS-SCCCCCCT
T ss_pred             CCEEECCCC-cCCCccChhhhc--------------CcccCCEEECCC-CCCCcchhhhhcCcCCEEECCC-CcCcccCh
Confidence            788888777 4443 5543221              235566666665 22112333333 6899999998 48889998


Q ss_pred             CCCCCCCcCceecccCCCCccccCC--CcccccceeeeccCh
Q 039689          711 IGENLTSLKFLDLDNCPKLKYFSKQ--GLPKSLLRLIIDECP  750 (763)
Q Consensus       711 ~~~~l~~L~~L~l~~c~~L~~l~~~--~~~~~L~~L~i~~C~  750 (763)
                      .+..+++|++|++++| +++.+|..  ...++|+.|+++++|
T Consensus       468 ~~~~l~~L~~L~L~~N-~l~~l~~~~~~~l~~L~~L~l~~N~  508 (562)
T 3a79_B          468 DVTHLQALQELNVASN-QLKSVPDGVFDRLTSLQYIWLHDNP  508 (562)
T ss_dssp             TTTSSCCCSEEECCSS-CCCCCCTTSTTTCTTCCCEECCSCC
T ss_pred             hhcCCCCCCEEECCCC-CCCCCCHHHHhcCCCCCEEEecCCC
Confidence            8888999999999986 68888874  334789999988764

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=99.96  E-value=1.6e-27  Score=265.61  Aligned_cols=426  Identities=16%  Similarity=0.124  Sum_probs=232.0

Q ss_pred             cEEecCCCCchhcchhhhhcccccEEeecccccccccc-ccccCcccccccccCCcccccccccCCCccCCCceeeecCc
Q 039689          223 RFLDLSTTKIEILRESINTLYNLHTLLLEDCRRLKKLC-KDMGNLTKLHHLNNSNVGSLEEMLMLKSLVHLQGTLEISRL  301 (763)
Q Consensus       223 ~~L~L~~~~i~~lp~~~~~L~~L~~L~L~~~~~l~~lp-~~i~~L~~L~~L~l~~~~~l~~l~~l~~L~~L~~~L~~~~~  301 (763)
                      ++||+++|.++.+|..+.  ++|++|++++| .+..+| ..|+++++|++|++++|. +..++                 
T Consensus         3 ~~l~ls~n~l~~ip~~~~--~~L~~L~Ls~n-~i~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~-----------------   61 (520)
T 2z7x_B            3 FLVDRSKNGLIHVPKDLS--QKTTILNISQN-YISELWTSDILSLSKLRILIISHNR-IQYLD-----------------   61 (520)
T ss_dssp             CEEECTTSCCSSCCCSCC--TTCSEEECCSS-CCCCCCHHHHTTCTTCCEEECCSSC-CCEEE-----------------
T ss_pred             ceEecCCCCccccccccc--ccccEEECCCC-cccccChhhccccccccEEecCCCc-cCCcC-----------------
Confidence            689999999999998777  89999999995 566665 579999999999999997 55442                 


Q ss_pred             ccccCcccchhhhhcCcccccceEEeeccCCCCCCccHHHHhhcCCCCCCc-eEEEeeeCCCC--CCCccCCCCCCCceE
Q 039689          302 ENVKGVGDASEVQLNSKVNLKALYLQWGVRDAVEPKTETQVIDMLKPHQKL-ELTITGYGGTK--FPIWLGDSLFSKLML  378 (763)
Q Consensus       302 ~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~l~~l~~L-~L~~~~~~~~~--~p~~~~~~~~~~L~~  378 (763)
                                +..+.++++|+.|++++|.....         ... .++.| .|++.++....  +|..++.  +++|++
T Consensus        62 ----------~~~~~~l~~L~~L~Ls~N~l~~l---------p~~-~l~~L~~L~L~~N~l~~~~~p~~~~~--l~~L~~  119 (520)
T 2z7x_B           62 ----------ISVFKFNQELEYLDLSHNKLVKI---------SCH-PTVNLKHLDLSFNAFDALPICKEFGN--MSQLKF  119 (520)
T ss_dssp             ----------GGGGTTCTTCCEEECCSSCCCEE---------ECC-CCCCCSEEECCSSCCSSCCCCGGGGG--CTTCCE
T ss_pred             ----------hHHhhcccCCCEEecCCCceeec---------Ccc-ccCCccEEeccCCccccccchhhhcc--CCcceE
Confidence                      12333444555555544422110         000 12222 22222222222  3344444  566666


Q ss_pred             EEEeccCCCCCCCCCCCCCCC--CcceecccCC--ceEeCccccCCCcCCCCCCcc----eeeccccchhhhcCCC----
Q 039689          379 LKFDNCGTCTSLPSVGQLPFL--KDPVISGMGR--VKIVGSEFYGSSCSVSFPSLE----TLFFVDICSKLQGTLP----  446 (763)
Q Consensus       379 L~l~~~~~~~~l~~l~~l~~L--~~L~l~~~~~--l~~~~~~~~~~~~~~~f~~L~----~L~l~~~~~~l~~~~~----  446 (763)
                      |++++|....  ..++.+++|  +.|+++++..  .....         ..|..++    .+++.+  +...+.++    
T Consensus       120 L~L~~n~l~~--~~~~~l~~L~L~~L~l~~n~l~~~~~~~---------~~l~~l~~~~l~l~l~~--n~~~~~~~~~~~  186 (520)
T 2z7x_B          120 LGLSTTHLEK--SSVLPIAHLNISKVLLVLGETYGEKEDP---------EGLQDFNTESLHIVFPT--NKEFHFILDVSV  186 (520)
T ss_dssp             EEEEESSCCG--GGGGGGTTSCEEEEEEEECTTTTSSCCT---------TTTTTCCEEEEEEECCS--SSCCCCCCCCCC
T ss_pred             EEecCcccch--hhccccccceeeEEEeeccccccccccc---------ccccccccceEEEEecc--Ccchhhhhhhhh
Confidence            6666654322  234444455  6666655433  11111         1122222    222222  11222222    


Q ss_pred             CcCCcccEEEEecCc------chh---hcCCCCCcccEEEEecCCcccccCCCccccceeccccchhhhhhcCCCCCCce
Q 039689          447 ERLLLLEKLNIFRCE------QLL---VTLQCLPALRELEIDGCKGVVLSSPTDLSSLKLVHSRDMAKEVFEQGLPKLER  517 (763)
Q Consensus       447 ~~~~~L~~L~l~~~~------~l~---~~l~~l~~L~~L~l~~~~~~~~~~~~~L~~L~~~~~~~~~~~~~~~~~~~L~~  517 (763)
                      ..+++|+.|++.+|.      .+.   ..+..+++|++|++++|.......            .. ....  ...++|++
T Consensus       187 ~~l~~L~~L~l~~n~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~------------~~-~~~~--~~~~~L~~  251 (520)
T 2z7x_B          187 KTVANLELSNIKCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIETTWNSF------------IR-ILQL--VWHTTVWY  251 (520)
T ss_dssp             TTCSEEEECCEEECCSTTTTHHHHHHHHGGGGCTTCCEEEEEEEEEEHHHH------------HH-HHHH--HHTSSCSE
T ss_pred             hcccceeeccccccccccccceeecchhhhccccchhhccccccccCHHHH------------HH-HHHH--hhhCcccE
Confidence            134455555555442      000   134445555555555543221000            00 0000  12457888


Q ss_pred             EEEeccCCccccccccCcCCc--------cccccCceeeccCCc------hhh-----hcceeeeccCCCcccccchhhh
Q 039689          518 LEIQHVREQTYLWRSETRLPQ--------DIRSLNRLQISRCPQ------LIS-----LLRTVKIEDCNALESLPEAWMH  578 (763)
Q Consensus       518 L~l~~~~~l~~l~~~~~~~p~--------~l~~L~~L~l~~~~~------l~~-----~L~~L~l~~~~~l~~l~~~~~~  578 (763)
                      |++++|....       .+|.        .+++|+.++++++.-      +..     .|+.|++++|. +..++.   .
T Consensus       252 L~l~~n~l~~-------~~p~~~~~~~~~~l~~L~~l~l~~n~~~~p~~~~~~~~~~~~L~~L~l~~n~-l~~~~~---~  320 (520)
T 2z7x_B          252 FSISNVKLQG-------QLDFRDFDYSGTSLKALSIHQVVSDVFGFPQSYIYEIFSNMNIKNFTVSGTR-MVHMLC---P  320 (520)
T ss_dssp             EEEEEEEEES-------CCCCCCCCCCSCCCCEEEEEEEEECCCCSCTHHHHHHHHTCCCSEEEEESSC-CCCCCC---C
T ss_pred             EEeecccccC-------ccccchhhcccccCceeEeccccccceecchhhhhcccccCceeEEEcCCCc-cccccc---h
Confidence            8888886443       3332        334445555544321      111     16666666643 332221   0


Q ss_pred             cCCCCcceEEEecCccccccCC-CCCCCCccEEEEccCCCCC--CCchhhhcCCCCCcceEeeccCCCccc-cccccCCC
Q 039689          579 NSNSSLESLKIRSCNSLVSFPD-FALPSQLRTVTIKGCDALE--SLPEAWMQNSSTSLESLAIDSCDSLTY-IARIQLPP  654 (763)
Q Consensus       579 ~~l~~L~~L~l~~c~~l~~~~~-~~~~~~L~~L~l~~~~~l~--~~~~~~~~~~l~~L~~L~l~~c~~l~~-l~~~~~~~  654 (763)
                      ..+++|++|++++|.....+|. +..+++|++|++++|...+  .+|..+  ..+++|+.|++++| .++. +|...+. 
T Consensus       321 ~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~--~~l~~L~~L~Ls~N-~l~~~l~~~~~~-  396 (520)
T 2z7x_B          321 SKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMT--TQMKSLQQLDISQN-SVSYDEKKGDCS-  396 (520)
T ss_dssp             SSCCCCCEEECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHH--TTCTTCCEEECCSS-CCBCCGGGCSCC-
T ss_pred             hhCCcccEEEeECCccChhhhhhhccCCCCCEEEccCCccCccccchHHH--hhCCCCCEEECCCC-cCCcccccchhc-
Confidence            1367777777776654443443 5666777777777774332  233444  66777777777776 4443 5543221 


Q ss_pred             CCcEEEEecCCCCCCCccceEEecCCCCCccccCC-CCCCcCeEeeccCCCCccccCCCCCCCCcCceecccCCCCcccc
Q 039689          655 SLKRLIIFRCDNLRFNSLRKLKISGGCPDLVSSPR-FPASLTELKISDMPSLERLSSIGENLTSLKFLDLDNCPKLKYFS  733 (763)
Q Consensus       655 ~L~~L~l~~c~~l~~~~L~~L~l~~~~~~l~~~~~-~~~~L~~L~l~~~~~l~~ip~~~~~l~~L~~L~l~~c~~L~~l~  733 (763)
                                   .+++|+.|++++ +.-...+|. .+++|++|++++ +.++.+|..+..+++|++|++++| +++.+|
T Consensus       397 -------------~l~~L~~L~Ls~-N~l~~~~~~~l~~~L~~L~Ls~-N~l~~ip~~~~~l~~L~~L~L~~N-~l~~l~  460 (520)
T 2z7x_B          397 -------------WTKSLLSLNMSS-NILTDTIFRCLPPRIKVLDLHS-NKIKSIPKQVVKLEALQELNVASN-QLKSVP  460 (520)
T ss_dssp             -------------CCTTCCEEECCS-SCCCGGGGGSCCTTCCEEECCS-SCCCCCCGGGGGCTTCCEEECCSS-CCCCCC
T ss_pred             -------------cCccCCEEECcC-CCCCcchhhhhcccCCEEECCC-CcccccchhhhcCCCCCEEECCCC-cCCccC
Confidence                         234566666665 221123333 336899999999 478899987889999999999997 688888


Q ss_pred             CCC--cccccceeeeccCh
Q 039689          734 KQG--LPKSLLRLIIDECP  750 (763)
Q Consensus       734 ~~~--~~~~L~~L~i~~C~  750 (763)
                      ...  ..++|++|++++||
T Consensus       461 ~~~~~~l~~L~~L~l~~N~  479 (520)
T 2z7x_B          461 DGIFDRLTSLQKIWLHTNP  479 (520)
T ss_dssp             TTTTTTCTTCCEEECCSSC
T ss_pred             HHHhccCCcccEEECcCCC
Confidence            742  34789999998865

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=99.96  E-value=2.5e-27  Score=267.54  Aligned_cols=134  Identities=22%  Similarity=0.304  Sum_probs=104.2

Q ss_pred             hhhccCCCCcccEEEecCCCCCccC-cccCCCCcccEEecCCCCchhcc-hhhhhcccccEEeeccccccccccc-cccC
Q 039689          189 VLQRLLNLPRLRVFSLRGYNIFELP-KAIENLKHLRFLDLSTTKIEILR-ESINTLYNLHTLLLEDCRRLKKLCK-DMGN  265 (763)
Q Consensus       189 ~~~~~~~l~~Lr~L~L~~~~i~~lp-~~~~~l~~L~~L~L~~~~i~~lp-~~~~~L~~L~~L~L~~~~~l~~lp~-~i~~  265 (763)
                      .+..|.++++|++|++++|.++.++ ..|+++++|++|+|++|.++.+| ..|+++++|++|++++ +.+..+|. .+++
T Consensus        44 ~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~-n~l~~l~~~~~~~  122 (570)
T 2z63_A           44 GSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVE-TNLASLENFPIGH  122 (570)
T ss_dssp             CTTTTTTCSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTT-SCCCCSTTCSCTT
T ss_pred             ChhHhhCCCCceEEECCCCcCCccCcccccCchhCCEEeCcCCcCCccCHhhhcCccccccccccc-cccccCCCccccc
Confidence            4557789999999999999999884 67999999999999999999885 6899999999999999 47777776 5999


Q ss_pred             cccccccccCCcccccc--ccc-CCCccCCCceeeecCcccccCcccchhhhhcCcccc----cceEEeec
Q 039689          266 LTKLHHLNNSNVGSLEE--MLM-LKSLVHLQGTLEISRLENVKGVGDASEVQLNSKVNL----KALYLQWG  329 (763)
Q Consensus       266 L~~L~~L~l~~~~~l~~--l~~-l~~L~~L~~~L~~~~~~~~~~~~~~~~~~l~~l~~L----~~L~l~~~  329 (763)
                      +++|++|++++|. +..  +|. ++++++|+ .+++.+.    .+.......+..+++|    +.|+++.|
T Consensus       123 l~~L~~L~L~~n~-l~~~~lp~~~~~l~~L~-~L~l~~n----~l~~~~~~~~~~l~~L~~~~~~L~l~~n  187 (570)
T 2z63_A          123 LKTLKELNVAHNL-IQSFKLPEYFSNLTNLE-HLDLSSN----KIQSIYCTDLRVLHQMPLLNLSLDLSLN  187 (570)
T ss_dssp             CTTCCEEECCSSC-CCCCCCCGGGGGCTTCC-EEECTTS----CCCEECGGGGHHHHTCTTCCCEEECTTC
T ss_pred             cccccEEecCCCc-cceecChhhhcccCCCC-EEeCcCC----ccceecHHHccchhccchhhhhcccCCC
Confidence            9999999999997 654  343 77788888 7877653    2223333445555555    55555544

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=99.95  E-value=2.1e-27  Score=273.49  Aligned_cols=443  Identities=14%  Similarity=0.141  Sum_probs=236.1

Q ss_pred             CcccEEecCCCCch-hcchhhhhcccccEEee-ccccccc-cccccccC----c-----ccccccccC----Cc--cc--
Q 039689          220 KHLRFLDLSTTKIE-ILRESINTLYNLHTLLL-EDCRRLK-KLCKDMGN----L-----TKLHHLNNS----NV--GS--  279 (763)
Q Consensus       220 ~~L~~L~L~~~~i~-~lp~~~~~L~~L~~L~L-~~~~~l~-~lp~~i~~----L-----~~L~~L~l~----~~--~~--  279 (763)
                      .+++.|+|+++.+. .+|++|++|++|++|+| ++ +.+. ..|.....    +     ..++..+..    ..  ..  
T Consensus       323 ~~V~~L~Ls~~~L~G~ip~~l~~L~~L~~LdLss~-N~lsG~~~~~~~~~~~~l~~~~l~~lr~~~~~~~l~~~~~~~~s  401 (876)
T 4ecn_A          323 GRVTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTH-SETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLS  401 (876)
T ss_dssp             SCEEEEECTTTCCEEEECGGGGGCTTCCEEESCCT-THHHHTTCBTTBCCCSSCCHHHHHHHHTHHHHHHTCCCGGGGSC
T ss_pred             CCEEEEECccCCCCCcCchHHhccccceEeeeccc-ccccccccccccccccccchhHHHHHHHhhhhhhhccCcchhhh
Confidence            57999999999998 78999999999999999 55 4432 22211100    0     111110000    00  00  


Q ss_pred             ------ccccccCCCccCCCceeeecCcc--c-ccCcccchhhhhcCcccccceEEeeccCCCCCCccHHHHhhcCCCCC
Q 039689          280 ------LEEMLMLKSLVHLQGTLEISRLE--N-VKGVGDASEVQLNSKVNLKALYLQWGVRDAVEPKTETQVIDMLKPHQ  350 (763)
Q Consensus       280 ------l~~l~~l~~L~~L~~~L~~~~~~--~-~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~l~~l~  350 (763)
                            +...+......... .+.+..+.  . .+.+.. .+..+.++++|+.|++++|.........      ...+..
T Consensus       402 ~l~~~~l~~~~~~~~i~~~~-~l~l~~l~l~~~~N~L~~-IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~------~~~~~s  473 (876)
T 4ecn_A          402 DLLQDAINRNPEMKPIKKDS-RISLKDTQIGNLTNRITF-ISKAIQRLTKLQIIYFANSPFTYDNIAV------DWEDAN  473 (876)
T ss_dssp             HHHHHHHHTCTTSCCCCCCC-CCCCCTTTTTCCSCEEEE-ECGGGGGCTTCCEEEEESCCCCGGGBSS------SCSCTT
T ss_pred             HHHHHHhhhCcccccccccc-ccchhhceeccccCcccc-hhHHHhcCCCCCEEECcCCcCCCCcccc------cccccc
Confidence                  00001110000000 11111110  0 112223 3456888899999999877543310000      000000


Q ss_pred             CceEEEeeeCCCCCCCccC--CCCCCCceEEEEeccCCCCCCC-CCCCCCCCCcceecccCCce--EeCccccCCC-cCC
Q 039689          351 KLELTITGYGGTKFPIWLG--DSLFSKLMLLKFDNCGTCTSLP-SVGQLPFLKDPVISGMGRVK--IVGSEFYGSS-CSV  424 (763)
Q Consensus       351 ~L~L~~~~~~~~~~p~~~~--~~~~~~L~~L~l~~~~~~~~l~-~l~~l~~L~~L~l~~~~~l~--~~~~~~~~~~-~~~  424 (763)
                        .    .+....+|..++  .  +++|+.|++++|...+.+| .++.+++|+.|++++|..+.  .++..+..-. ...
T Consensus       474 --~----n~~~g~iP~~l~f~~--L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~  545 (876)
T 4ecn_A          474 --S----DYAKQYENEELSWSN--LKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDED  545 (876)
T ss_dssp             --S----HHHHHHTTSCCCGGG--CTTCCEEEEESCTTCCSCCGGGGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTT
T ss_pred             --c----ccccccCChhhhhcc--CCCCCEEECcCCCCCccChHHHhCCCCCCEEECcCCCCcccccchHHHHhhhhccc
Confidence              0    000012677765  5  8999999999998888888 68999999999999986332  2322221100 113


Q ss_pred             CCCCcceeeccccchhhhcCCCC-----cCCcccEEEEecCc--chhhcCCCCCcccEEEEecCCcccccCCCcccccee
Q 039689          425 SFPSLETLFFVDICSKLQGTLPE-----RLLLLEKLNIFRCE--QLLVTLQCLPALRELEIDGCKGVVLSSPTDLSSLKL  497 (763)
Q Consensus       425 ~f~~L~~L~l~~~~~~l~~~~~~-----~~~~L~~L~l~~~~--~l~~~l~~l~~L~~L~l~~~~~~~~~~~~~L~~L~~  497 (763)
                      .+++|+.|++.+  +.+. .+|.     .+++|+.|++++|.  .++ .+..+++|++|++++|....++  .       
T Consensus       546 ~l~~L~~L~Ls~--N~L~-~ip~~~~l~~L~~L~~L~Ls~N~l~~lp-~~~~L~~L~~L~Ls~N~l~~lp--~-------  612 (876)
T 4ecn_A          546 TGPKIQIFYMGY--NNLE-EFPASASLQKMVKLGLLDCVHNKVRHLE-AFGTNVKLTDLKLDYNQIEEIP--E-------  612 (876)
T ss_dssp             TTTTCCEEECCS--SCCC-BCCCHHHHTTCTTCCEEECTTSCCCBCC-CCCTTSEESEEECCSSCCSCCC--T-------
T ss_pred             ccCCccEEEeeC--CcCC-ccCChhhhhcCCCCCEEECCCCCcccch-hhcCCCcceEEECcCCccccch--H-------
Confidence            466888888877  3443 4443     56677777777765  233 5566777777777777644211  1       


Q ss_pred             ccccchhhhhhcCCCCC-CceEEEeccCCccccccccCcCCccccccCceeeccCCchhhhcceeeeccCCCcccccc--
Q 039689          498 VHSRDMAKEVFEQGLPK-LERLEIQHVREQTYLWRSETRLPQDIRSLNRLQISRCPQLISLLRTVKIEDCNALESLPE--  574 (763)
Q Consensus       498 ~~~~~~~~~~~~~~~~~-L~~L~l~~~~~l~~l~~~~~~~p~~l~~L~~L~l~~~~~l~~~L~~L~l~~~~~l~~l~~--  574 (763)
                                .+..+++ |+.|++++|...        .+|..+..+.   ...       |+.|++++|...+.+|.  
T Consensus       613 ----------~l~~l~~~L~~L~Ls~N~L~--------~lp~~~~~~~---~~~-------L~~L~Ls~N~l~g~ip~l~  664 (876)
T 4ecn_A          613 ----------DFCAFTDQVEGLGFSHNKLK--------YIPNIFNAKS---VYV-------MGSVDFSYNKIGSEGRNIS  664 (876)
T ss_dssp             ----------TSCEECTTCCEEECCSSCCC--------SCCSCCCTTC---SSC-------EEEEECCSSCTTTTSSSCS
T ss_pred             ----------HHhhccccCCEEECcCCCCC--------cCchhhhccc---cCC-------CCEEECcCCcCCCccccch
Confidence                      1244566 888888887633        3343222110   001       44555555433222221  


Q ss_pred             -hhhhcCCCCcceEEEecCccccccCC--CCCCCCccEEEEccCCCCCCCchhhhcC------CCCCcceEeeccCCCcc
Q 039689          575 -AWMHNSNSSLESLKIRSCNSLVSFPD--FALPSQLRTVTIKGCDALESLPEAWMQN------SSTSLESLAIDSCDSLT  645 (763)
Q Consensus       575 -~~~~~~l~~L~~L~l~~c~~l~~~~~--~~~~~~L~~L~l~~~~~l~~~~~~~~~~------~l~~L~~L~l~~c~~l~  645 (763)
                       ......+++|+.|++++|. +..+|.  +..+++|+.|++++| .+..+|...+..      .+++|+.|++++| .++
T Consensus       665 ~~l~~~~~~~L~~L~Ls~N~-L~~lp~~~~~~l~~L~~L~Ls~N-~L~~ip~~~~~~~~~~l~nl~~L~~L~Ls~N-~L~  741 (876)
T 4ecn_A          665 CSMDDYKGINASTVTLSYNE-IQKFPTELFATGSPISTIILSNN-LMTSIPENSLKPKDGNYKNTYLLTTIDLRFN-KLT  741 (876)
T ss_dssp             SCTTTCCCCCEEEEECCSSC-CCSCCHHHHHTTCCCSEEECCSC-CCSCCCTTSSSCTTSCCTTGGGCCEEECCSS-CCC
T ss_pred             hhhccccCCCcCEEEccCCc-CCccCHHHHccCCCCCEEECCCC-cCCccChHHhccccccccccCCccEEECCCC-CCc
Confidence             1111124588899998765 456665  246788999999888 555777765311      2238899999988 677


Q ss_pred             ccccccC---CCCCcEEEEecCCCC-------CCCccceEEecCC----CCC-ccccCC---CCCCcCeEeeccCCCCcc
Q 039689          646 YIARIQL---PPSLKRLIIFRCDNL-------RFNSLRKLKISGG----CPD-LVSSPR---FPASLTELKISDMPSLER  707 (763)
Q Consensus       646 ~l~~~~~---~~~L~~L~l~~c~~l-------~~~~L~~L~l~~~----~~~-l~~~~~---~~~~L~~L~l~~~~~l~~  707 (763)
                      .+|....   .++|+.|++++|.--       .+++|+.|+++++    ++. ...+|.   .+++|++|++++| .++.
T Consensus       742 ~lp~~l~~~~l~~L~~L~Ls~N~L~~lp~~l~~L~~L~~L~Ls~N~~ls~N~l~~~ip~~l~~L~~L~~L~Ls~N-~L~~  820 (876)
T 4ecn_A          742 SLSDDFRATTLPYLSNMDVSYNCFSSFPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSN-DIRK  820 (876)
T ss_dssp             CCCGGGSTTTCTTCCEEECCSSCCSSCCCGGGGCTTCCEEECCCCBCTTCCBCCCCCCTTGGGCSSCCEEECCSS-CCCB
T ss_pred             cchHHhhhccCCCcCEEEeCCCCCCccchhhhcCCCCCEEECCCCCCcccccccccChHHHhcCCCCCEEECCCC-CCCc
Confidence            7765432   456666666555321       2344555555430    011 122222   2345555555553 3355


Q ss_pred             ccCCCCCCCCcCceecccC
Q 039689          708 LSSIGENLTSLKFLDLDNC  726 (763)
Q Consensus       708 ip~~~~~l~~L~~L~l~~c  726 (763)
                      +|..+.  ++|+.|++++|
T Consensus       821 Ip~~l~--~~L~~LdLs~N  837 (876)
T 4ecn_A          821 VDEKLT--PQLYILDIADN  837 (876)
T ss_dssp             CCSCCC--SSSCEEECCSC
T ss_pred             cCHhhc--CCCCEEECCCC
Confidence            554332  35555555554

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=99.95  E-value=1e-26  Score=261.09  Aligned_cols=430  Identities=20%  Similarity=0.158  Sum_probs=248.9

Q ss_pred             hhhccCCCCcccEEEecCCCCCccC-cccCCCCcccEEecCCCCchhc-chhhhhcccccEEeeccccccccccccccCc
Q 039689          189 VLQRLLNLPRLRVFSLRGYNIFELP-KAIENLKHLRFLDLSTTKIEIL-RESINTLYNLHTLLLEDCRRLKKLCKDMGNL  266 (763)
Q Consensus       189 ~~~~~~~l~~Lr~L~L~~~~i~~lp-~~~~~l~~L~~L~L~~~~i~~l-p~~~~~L~~L~~L~L~~~~~l~~lp~~i~~L  266 (763)
                      +|..+.  ++|++|++++|.++.++ ..|..+++|++|+|++|.++.+ |..|+++++|++|++++ +.+..+|..  .+
T Consensus        46 ip~~~~--~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~-N~l~~lp~~--~l  120 (562)
T 3a79_B           46 VPKDLP--PRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSH-NRLQNISCC--PM  120 (562)
T ss_dssp             CCTTSC--TTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECTT-SCCCEECSC--CC
T ss_pred             CCCCCC--CCcCEEECCCCCccccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEECCC-CcCCccCcc--cc
Confidence            444443  79999999999999986 7899999999999999999988 67899999999999999 578899987  89


Q ss_pred             ccccccccCCcccccccc---cCCCccCCCceeeecCcccccCcccchhhhhcCcccc--cceEEeeccCCCCCCccHHH
Q 039689          267 TKLHHLNNSNVGSLEEML---MLKSLVHLQGTLEISRLENVKGVGDASEVQLNSKVNL--KALYLQWGVRDAVEPKTETQ  341 (763)
Q Consensus       267 ~~L~~L~l~~~~~l~~l~---~l~~L~~L~~~L~~~~~~~~~~~~~~~~~~l~~l~~L--~~L~l~~~~~~~~~~~~~~~  341 (763)
                      ++|++|++++|. +..++   .++++++|+ .|++.+..    +..   ..+..+++|  +.|++++|....        
T Consensus       121 ~~L~~L~Ls~N~-l~~l~~p~~~~~l~~L~-~L~L~~n~----l~~---~~~~~l~~L~L~~L~L~~n~l~~--------  183 (562)
T 3a79_B          121 ASLRHLDLSFND-FDVLPVCKEFGNLTKLT-FLGLSAAK----FRQ---LDLLPVAHLHLSCILLDLVSYHI--------  183 (562)
T ss_dssp             TTCSEEECCSSC-CSBCCCCGGGGGCTTCC-EEEEECSB----CCT---TTTGGGTTSCEEEEEEEESSCCC--------
T ss_pred             ccCCEEECCCCC-ccccCchHhhcccCccc-EEecCCCc----ccc---CchhhhhhceeeEEEeecccccc--------
Confidence            999999999998 66544   355566666 55555411    111   122333333  666665553200        


Q ss_pred             HhhcCCCCCCceEEEeeeCCCCCCCccCCCCCCCceEEEEeccCCCCCCC--CCCCCCCCCcceecccCC----ceEeCc
Q 039689          342 VIDMLKPHQKLELTITGYGGTKFPIWLGDSLFSKLMLLKFDNCGTCTSLP--SVGQLPFLKDPVISGMGR----VKIVGS  415 (763)
Q Consensus       342 ~l~~l~~l~~L~L~~~~~~~~~~p~~~~~~~~~~L~~L~l~~~~~~~~l~--~l~~l~~L~~L~l~~~~~----l~~~~~  415 (763)
                                         ....|.++..... ..-.+++++|.....++  .+..+++|+.++++++..    +.....
T Consensus       184 -------------------~~~~~~~l~~l~~-~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~l~~~~~  243 (562)
T 3a79_B          184 -------------------KGGETESLQIPNT-TVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLS  243 (562)
T ss_dssp             -------------------CSSSCCEEEECCE-EEEEEEECSSSCCCCCCEEEESSEEEEEEEEEECCSTTHHHHHHHHH
T ss_pred             -------------------cccCcccccccCc-ceEEEEecCccchhhhhhhcccccceEEEecccccccccchHHHHHH
Confidence                               0111222221001 11133444444433333  344556666666665421    000000


Q ss_pred             cccCCCcCCCCCCcceeeccccc---hhhhcCCC-CcCCcccEEEEecCc---chhhcC-----CCCCcccEEEEecCCc
Q 039689          416 EFYGSSCSVSFPSLETLFFVDIC---SKLQGTLP-ERLLLLEKLNIFRCE---QLLVTL-----QCLPALRELEIDGCKG  483 (763)
Q Consensus       416 ~~~~~~~~~~f~~L~~L~l~~~~---~~l~~~~~-~~~~~L~~L~l~~~~---~l~~~l-----~~l~~L~~L~l~~~~~  483 (763)
                      .+      ...++|+.+++.+.-   ..+.+..+ ...++|++|++.+|.   .++..+     +.++.|+.+++..+..
T Consensus       244 ~l------~~l~~L~~L~L~~~~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~  317 (562)
T 3a79_B          244 EL------TRGPTLLNVTLQHIETTWKCSVKLFQFFWPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVF  317 (562)
T ss_dssp             HH------HSCSSCEEEEEEEEEECHHHHHHHHHHHTTSSEEEEEEEEEEECSCCCCCCCCCCSCSCCEEEEEEEEECCC
T ss_pred             HH------hccCcceEEEecCCcCcHHHHHHHHHhhhcccccEEEEeccEeeccccchhhhcccccchheehhhccccee
Confidence            11      124555555555420   11110000 123477888887775   222222     3344444444444332


Q ss_pred             ccccCCCccccceeccccchhhhhhcCCCCCCceEEEeccCCccccccccCcCCccccccCceeeccCCchhhhcceeee
Q 039689          484 VVLSSPTDLSSLKLVHSRDMAKEVFEQGLPKLERLEIQHVREQTYLWRSETRLPQDIRSLNRLQISRCPQLISLLRTVKI  563 (763)
Q Consensus       484 ~~~~~~~~L~~L~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~p~~l~~L~~L~l~~~~~l~~~L~~L~l  563 (763)
                       .   ++.           ...... ....+|++|++++|.....      ..+..+++|+.|++++             
T Consensus       318 -~---~p~-----------~~~~~~-~~~~~L~~L~l~~n~~~~~------~~~~~l~~L~~L~l~~-------------  362 (562)
T 3a79_B          318 -L---FSK-----------EALYSV-FAEMNIKMLSISDTPFIHM------VCPPSPSSFTFLNFTQ-------------  362 (562)
T ss_dssp             -S---SCH-----------HHHHHH-HHTCCCSEEEEESSCCCCC------CCCSSCCCCCEEECCS-------------
T ss_pred             -e---cCh-----------hhhhhh-hccCcceEEEccCCCcccc------cCccCCCCceEEECCC-------------
Confidence             1   000           000000 0125688888888764321      1224445555544444             


Q ss_pred             ccCCCccc-ccchhhhcCCCCcceEEEecCccccccCC----CCCCCCccEEEEccCCCCCCCchhhhcCCCCCcceEee
Q 039689          564 EDCNALES-LPEAWMHNSNSSLESLKIRSCNSLVSFPD----FALPSQLRTVTIKGCDALESLPEAWMQNSSTSLESLAI  638 (763)
Q Consensus       564 ~~~~~l~~-l~~~~~~~~l~~L~~L~l~~c~~l~~~~~----~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l  638 (763)
                         +.++. +|..+  ..+++|++|++++|. ++.++.    +..+++|++|++++|.....+|...+ ..+++|+.|++
T Consensus       363 ---n~l~~~~~~~~--~~l~~L~~L~L~~N~-l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~-~~l~~L~~L~l  435 (562)
T 3a79_B          363 ---NVFTDSVFQGC--STLKRLQTLILQRNG-LKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTC-AWAESILVLNL  435 (562)
T ss_dssp             ---SCCCTTTTTTC--CSCSSCCEEECCSSC-CCBTTHHHHTTTTCTTCCEEECTTSCCBSCCSSCCC-CCCTTCCEEEC
T ss_pred             ---Cccccchhhhh--cccCCCCEEECCCCC-cCCcccchhhhcCCCCCCEEECCCCcCCCccChhhh-cCcccCCEEEC
Confidence               44444 44432  237888888887764 454432    56778888888888865544766533 67788888888


Q ss_pred             ccCCCccccccccCCCCCcEEEEecCCCCCCCccceEEecCCCCCccccCC---CCCCcCeEeeccCCCCccccCC-CCC
Q 039689          639 DSCDSLTYIARIQLPPSLKRLIIFRCDNLRFNSLRKLKISGGCPDLVSSPR---FPASLTELKISDMPSLERLSSI-GEN  714 (763)
Q Consensus       639 ~~c~~l~~l~~~~~~~~L~~L~l~~c~~l~~~~L~~L~l~~~~~~l~~~~~---~~~~L~~L~l~~~~~l~~ip~~-~~~  714 (763)
                      ++| .++......++++|                +.|++++  +.+..+|.   .+++|++|++++ +.++.+|.. +..
T Consensus       436 ~~n-~l~~~~~~~l~~~L----------------~~L~L~~--N~l~~ip~~~~~l~~L~~L~L~~-N~l~~l~~~~~~~  495 (562)
T 3a79_B          436 SSN-MLTGSVFRCLPPKV----------------KVLDLHN--NRIMSIPKDVTHLQALQELNVAS-NQLKSVPDGVFDR  495 (562)
T ss_dssp             CSS-CCCGGGGSSCCTTC----------------SEEECCS--SCCCCCCTTTTSSCCCSEEECCS-SCCCCCCTTSTTT
T ss_pred             CCC-CCCcchhhhhcCcC----------------CEEECCC--CcCcccChhhcCCCCCCEEECCC-CCCCCCCHHHHhc
Confidence            888 44332222222344                4444443  24444544   457899999998 678889987 688


Q ss_pred             CCCcCceecccCCC
Q 039689          715 LTSLKFLDLDNCPK  728 (763)
Q Consensus       715 l~~L~~L~l~~c~~  728 (763)
                      +++|++|+++++|-
T Consensus       496 l~~L~~L~l~~N~~  509 (562)
T 3a79_B          496 LTSLQYIWLHDNPW  509 (562)
T ss_dssp             CTTCCCEECCSCCB
T ss_pred             CCCCCEEEecCCCc
Confidence            99999999999863

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=99.94  E-value=2.2e-26  Score=263.60  Aligned_cols=111  Identities=24%  Similarity=0.339  Sum_probs=93.7

Q ss_pred             hhhhhccCCCCcccEEEecCCCCCccC-cccCCCCcccEEecCCCCchhcch-hhhhcccccEEeecccccccccccc-c
Q 039689          187 QNVLQRLLNLPRLRVFSLRGYNIFELP-KAIENLKHLRFLDLSTTKIEILRE-SINTLYNLHTLLLEDCRRLKKLCKD-M  263 (763)
Q Consensus       187 ~~~~~~~~~l~~Lr~L~L~~~~i~~lp-~~~~~l~~L~~L~L~~~~i~~lp~-~~~~L~~L~~L~L~~~~~l~~lp~~-i  263 (763)
                      ...+.+|.++++|++|+|++|.|+.+| .+|.++++|++|+|++|.++.+|. .|+++++|++|+|++| .+..+|+. |
T Consensus        66 ~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~~f~~L~~L~~L~Ls~N-~l~~l~~~~~  144 (635)
T 4g8a_A           66 HLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVET-NLASLENFPI  144 (635)
T ss_dssp             EECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECGGGGTTCTTCCEEECTTS-CCCCSTTCCC
T ss_pred             CCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCCCCCHHHhcCCCCCCEEECCCC-cCCCCChhhh
Confidence            334567899999999999999999995 679999999999999999999975 6899999999999994 77788764 9


Q ss_pred             cCcccccccccCCcccccccc--c-CCCccCCCceeeecC
Q 039689          264 GNLTKLHHLNNSNVGSLEEML--M-LKSLVHLQGTLEISR  300 (763)
Q Consensus       264 ~~L~~L~~L~l~~~~~l~~l~--~-l~~L~~L~~~L~~~~  300 (763)
                      +++++|++|++++|. +..++  . +..++.|+ .|.+.+
T Consensus       145 ~~L~~L~~L~Ls~N~-l~~~~~~~~~~~l~~L~-~L~L~~  182 (635)
T 4g8a_A          145 GHLKTLKELNVAHNL-IQSFKLPEYFSNLTNLE-HLDLSS  182 (635)
T ss_dssp             TTCTTCCEEECCSSC-CCCCCCCGGGGGCTTCC-EEECCS
T ss_pred             hcCcccCeeccccCc-cccCCCchhhccchhhh-hhcccC
Confidence            999999999999997 65432  2 56677777 777755

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=99.94  E-value=1.2e-26  Score=251.49  Aligned_cols=380  Identities=21%  Similarity=0.226  Sum_probs=222.7

Q ss_pred             CcccCCCCcccEEecCCCCchhcchhhhhcccccEEeeccccccccccccccCcccccccccCCcccccccccCCCccCC
Q 039689          213 PKAIENLKHLRFLDLSTTKIEILRESINTLYNLHTLLLEDCRRLKKLCKDMGNLTKLHHLNNSNVGSLEEMLMLKSLVHL  292 (763)
Q Consensus       213 p~~~~~l~~L~~L~L~~~~i~~lp~~~~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~l~~l~~L~~L  292 (763)
                      |+.+ ..++|++|++++|.+..+|++|++|++|++|++++|...+.+|.+++++++|+.+++.+|..             
T Consensus         5 p~~~-~~~~L~~L~l~~n~l~~iP~~i~~L~~L~~L~l~~n~~~~~~p~~~~~l~~L~~l~l~~c~~-------------   70 (454)
T 1jl5_A            5 PRNV-SNTFLQEPLRHSSNLTEMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLD-------------   70 (454)
T ss_dssp             ------------------------------CCHHHHHHHHHHHHHTSCTTSCCCHHHHHHHHHHHHH-------------
T ss_pred             cccc-ccccchhhhcccCchhhCChhHhcccchhhhhccCCcccccCCcccccchhcchhhhhhhhc-------------
Confidence            4444 46899999999999999999999999999999999877779999999999998888887751             


Q ss_pred             CceeeecCcccccCcccchhhhhcCcccccceEEeeccCCCCCCccHHHHhhcCCCCCCceEEEeeeCCCCCCCccCCCC
Q 039689          293 QGTLEISRLENVKGVGDASEVQLNSKVNLKALYLQWGVRDAVEPKTETQVIDMLKPHQKLELTITGYGGTKFPIWLGDSL  372 (763)
Q Consensus       293 ~~~L~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~l~~l~~L~L~~~~~~~~~~p~~~~~~~  372 (763)
                                                .+++.|+++.+                              ....+|..     
T Consensus        71 --------------------------~~l~~L~l~~~------------------------------~l~~lp~~-----   89 (454)
T 1jl5_A           71 --------------------------RQAHELELNNL------------------------------GLSSLPEL-----   89 (454)
T ss_dssp             --------------------------HTCSEEECTTS------------------------------CCSCCCSC-----
T ss_pred             --------------------------cCCCEEEecCC------------------------------ccccCCCC-----
Confidence                                      12233333222                              22223321     


Q ss_pred             CCCceEEEEeccCCCCCCCCCCCCCCCCcceecccCCceEeCccccCCCcCCCCCCcceeeccccchhhhcCCC--CcCC
Q 039689          373 FSKLMLLKFDNCGTCTSLPSVGQLPFLKDPVISGMGRVKIVGSEFYGSSCSVSFPSLETLFFVDICSKLQGTLP--ERLL  450 (763)
Q Consensus       373 ~~~L~~L~l~~~~~~~~l~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~f~~L~~L~l~~~~~~l~~~~~--~~~~  450 (763)
                      .++|+.|++++|...+ +|..  +++|+.|+++++.... ++         ...++|++|++.+  +.+.+ +|  ..++
T Consensus        90 ~~~L~~L~l~~n~l~~-lp~~--~~~L~~L~l~~n~l~~-l~---------~~~~~L~~L~L~~--n~l~~-lp~~~~l~  153 (454)
T 1jl5_A           90 PPHLESLVASCNSLTE-LPEL--PQSLKSLLVDNNNLKA-LS---------DLPPLLEYLGVSN--NQLEK-LPELQNSS  153 (454)
T ss_dssp             CTTCSEEECCSSCCSS-CCCC--CTTCCEEECCSSCCSC-CC---------SCCTTCCEEECCS--SCCSS-CCCCTTCT
T ss_pred             cCCCCEEEccCCcCCc-cccc--cCCCcEEECCCCccCc-cc---------CCCCCCCEEECcC--CCCCC-CcccCCCC
Confidence            3567777777775433 5532  3677777777653221 11         0125677777766  23332 33  3456


Q ss_pred             cccEEEEecCcchhhcCCCCCcccEEEEecCCcccccCCCccccceeccccchhhhhhcCCCCCCceEEEeccCCccccc
Q 039689          451 LLEKLNIFRCEQLLVTLQCLPALRELEIDGCKGVVLSSPTDLSSLKLVHSRDMAKEVFEQGLPKLERLEIQHVREQTYLW  530 (763)
Q Consensus       451 ~L~~L~l~~~~~l~~~l~~l~~L~~L~l~~~~~~~~~~~~~L~~L~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~  530 (763)
                      +|++|++++|.-. ......++|++|++++|.....+.                    +..+++|++|++++|...    
T Consensus       154 ~L~~L~l~~N~l~-~lp~~~~~L~~L~L~~n~l~~l~~--------------------~~~l~~L~~L~l~~N~l~----  208 (454)
T 1jl5_A          154 FLKIIDVDNNSLK-KLPDLPPSLEFIAAGNNQLEELPE--------------------LQNLPFLTAIYADNNSLK----  208 (454)
T ss_dssp             TCCEEECCSSCCS-CCCCCCTTCCEEECCSSCCSSCCC--------------------CTTCTTCCEEECCSSCCS----
T ss_pred             CCCEEECCCCcCc-ccCCCcccccEEECcCCcCCcCcc--------------------ccCCCCCCEEECCCCcCC----
Confidence            6777777776422 111224577777777765443221                    256788888888888643    


Q ss_pred             cccCcCCccccccCceeeccCCchhhhcceeeeccCCCcccccchhhhcCCCCcceEEEecCccccccCCCCCCCCccEE
Q 039689          531 RSETRLPQDIRSLNRLQISRCPQLISLLRTVKIEDCNALESLPEAWMHNSNSSLESLKIRSCNSLVSFPDFALPSQLRTV  610 (763)
Q Consensus       531 ~~~~~~p~~l~~L~~L~l~~~~~l~~~L~~L~l~~~~~l~~l~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~L~~L  610 (763)
                          .+|...++|+.|+               +++ +.++.+|. +  ..+++|++|++++|. ++.+|.  .+++|++|
T Consensus       209 ----~l~~~~~~L~~L~---------------l~~-n~l~~lp~-~--~~l~~L~~L~l~~N~-l~~l~~--~~~~L~~L  262 (454)
T 1jl5_A          209 ----KLPDLPLSLESIV---------------AGN-NILEELPE-L--QNLPFLTTIYADNNL-LKTLPD--LPPSLEAL  262 (454)
T ss_dssp             ----SCCCCCTTCCEEE---------------CCS-SCCSSCCC-C--TTCTTCCEEECCSSC-CSSCCS--CCTTCCEE
T ss_pred             ----cCCCCcCcccEEE---------------CcC-CcCCcccc-c--CCCCCCCEEECCCCc-CCcccc--cccccCEE
Confidence                3444444544444               444 45667774 2  248899999998765 566764  45789999


Q ss_pred             EEccCCCCCCCchhhhcCCCCCcceEeeccCCCccccccccCCCCCcEEEEecCCCC---CC-CccceEEecCCCCCccc
Q 039689          611 TIKGCDALESLPEAWMQNSSTSLESLAIDSCDSLTYIARIQLPPSLKRLIIFRCDNL---RF-NSLRKLKISGGCPDLVS  686 (763)
Q Consensus       611 ~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~L~~L~l~~c~~l---~~-~~L~~L~l~~~~~~l~~  686 (763)
                      ++++| .++.+|.     .+++|+.|++++| .++.++  .++++|+.|++++|.--   .+ .+|+.|++++  +.+..
T Consensus       263 ~l~~N-~l~~l~~-----~~~~L~~L~ls~N-~l~~l~--~~~~~L~~L~l~~N~l~~i~~~~~~L~~L~Ls~--N~l~~  331 (454)
T 1jl5_A          263 NVRDN-YLTDLPE-----LPQSLTFLDVSEN-IFSGLS--ELPPNLYYLNASSNEIRSLCDLPPSLEELNVSN--NKLIE  331 (454)
T ss_dssp             ECCSS-CCSCCCC-----CCTTCCEEECCSS-CCSEES--CCCTTCCEEECCSSCCSEECCCCTTCCEEECCS--SCCSC
T ss_pred             ECCCC-cccccCc-----ccCcCCEEECcCC-ccCccc--CcCCcCCEEECcCCcCCcccCCcCcCCEEECCC--Ccccc
Confidence            99998 4555664     3478999999988 666665  34678999998877533   22 4899999987  67788


Q ss_pred             cCCCCCCcCeEeeccCCCCccccCCCCCCCCcCceecccCCCCcccc---CC-C-c------------ccccceeeeccC
Q 039689          687 SPRFPASLTELKISDMPSLERLSSIGENLTSLKFLDLDNCPKLKYFS---KQ-G-L------------PKSLLRLIIDEC  749 (763)
Q Consensus       687 ~~~~~~~L~~L~l~~~~~l~~ip~~~~~l~~L~~L~l~~c~~L~~l~---~~-~-~------------~~~L~~L~i~~C  749 (763)
                      +|..+++|++|++++ +.++.+|.   .+++|++|++++| .++.+|   .. . +            +++|+.|+++++
T Consensus       332 lp~~~~~L~~L~L~~-N~l~~lp~---~l~~L~~L~L~~N-~l~~l~~ip~~l~~L~~n~~~~~i~~~~~~L~~L~ls~N  406 (454)
T 1jl5_A          332 LPALPPRLERLIASF-NHLAEVPE---LPQNLKQLHVEYN-PLREFPDIPESVEDLRMNSHLAEVPELPQNLKQLHVETN  406 (454)
T ss_dssp             CCCCCTTCCEEECCS-SCCSCCCC---CCTTCCEEECCSS-CCSSCCCCCTTCCEEECCC--------------------
T ss_pred             ccccCCcCCEEECCC-Cccccccc---hhhhccEEECCCC-CCCcCCCChHHHHhhhhcccccccccccCcCCEEECCCC
Confidence            888889999999999 57888996   5799999999997 555543   21 1 1            267999999988


Q ss_pred             h
Q 039689          750 P  750 (763)
Q Consensus       750 ~  750 (763)
                      +
T Consensus       407 ~  407 (454)
T 1jl5_A          407 P  407 (454)
T ss_dssp             -
T ss_pred             c
Confidence            6

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=99.94  E-value=3.8e-26  Score=247.74  Aligned_cols=304  Identities=17%  Similarity=0.107  Sum_probs=191.4

Q ss_pred             ccCCCCcccEEEecCCCCCccCcccCCCCcccEEecCCCCchhcchhhhhcccccEEeeccccccccccccccCcccccc
Q 039689          192 RLLNLPRLRVFSLRGYNIFELPKAIENLKHLRFLDLSTTKIEILRESINTLYNLHTLLLEDCRRLKKLCKDMGNLTKLHH  271 (763)
Q Consensus       192 ~~~~l~~Lr~L~L~~~~i~~lp~~~~~l~~L~~L~L~~~~i~~lp~~~~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~  271 (763)
                      .+..+++|++|++++|.++.+| .|+.+++|++|+|++|.++.+|  ++.+++|++|++++| .+..+|  ++++++|++
T Consensus        37 ~~~~l~~L~~L~Ls~n~l~~~~-~l~~l~~L~~L~Ls~n~l~~~~--~~~l~~L~~L~Ls~N-~l~~~~--~~~l~~L~~  110 (457)
T 3bz5_A           37 SEEQLATLTSLDCHNSSITDMT-GIEKLTGLTKLICTSNNITTLD--LSQNTNLTYLACDSN-KLTNLD--VTPLTKLTY  110 (457)
T ss_dssp             EHHHHTTCCEEECCSSCCCCCT-TGGGCTTCSEEECCSSCCSCCC--CTTCTTCSEEECCSS-CCSCCC--CTTCTTCCE
T ss_pred             ChhHcCCCCEEEccCCCcccCh-hhcccCCCCEEEccCCcCCeEc--cccCCCCCEEECcCC-CCceee--cCCCCcCCE
Confidence            4566889999999999999887 6899999999999999999986  899999999999994 677775  899999999


Q ss_pred             cccCCcccccccccCCCccCCCceeeecCcccccCcccchhhhhcCcccccceEEeeccCCCCCCccHHHHhhcCCCCCC
Q 039689          272 LNNSNVGSLEEMLMLKSLVHLQGTLEISRLENVKGVGDASEVQLNSKVNLKALYLQWGVRDAVEPKTETQVIDMLKPHQK  351 (763)
Q Consensus       272 L~l~~~~~l~~l~~l~~L~~L~~~L~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~l~~l~~  351 (763)
                      |++++|. +..++ ++.+                             ++|+.|+++.|..                    
T Consensus       111 L~L~~N~-l~~l~-~~~l-----------------------------~~L~~L~l~~N~l--------------------  139 (457)
T 3bz5_A          111 LNCDTNK-LTKLD-VSQN-----------------------------PLLTYLNCARNTL--------------------  139 (457)
T ss_dssp             EECCSSC-CSCCC-CTTC-----------------------------TTCCEEECTTSCC--------------------
T ss_pred             EECCCCc-CCeec-CCCC-----------------------------CcCCEEECCCCcc--------------------
Confidence            9999997 55443 3333                             3444444443321                    


Q ss_pred             ceEEEeeeCCCCCCCccCCCCCCCceEEEEeccCCCCCCCCCCCCCCCCcceecccCCceEeCccccCCCcCCCCCCcce
Q 039689          352 LELTITGYGGTKFPIWLGDSLFSKLMLLKFDNCGTCTSLPSVGQLPFLKDPVISGMGRVKIVGSEFYGSSCSVSFPSLET  431 (763)
Q Consensus       352 L~L~~~~~~~~~~p~~~~~~~~~~L~~L~l~~~~~~~~l~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~f~~L~~  431 (763)
                                ..++  ++.  +++|+.|++++|...+.+ .++.+++|+.|+++++.... ++        ...+++|+.
T Consensus       140 ----------~~l~--l~~--l~~L~~L~l~~n~~~~~~-~~~~l~~L~~L~ls~n~l~~-l~--------l~~l~~L~~  195 (457)
T 3bz5_A          140 ----------TEID--VSH--NTQLTELDCHLNKKITKL-DVTPQTQLTTLDCSFNKITE-LD--------VSQNKLLNR  195 (457)
T ss_dssp             ----------SCCC--CTT--CTTCCEEECTTCSCCCCC-CCTTCTTCCEEECCSSCCCC-CC--------CTTCTTCCE
T ss_pred             ----------ceec--ccc--CCcCCEEECCCCCccccc-ccccCCcCCEEECCCCccce-ec--------cccCCCCCE
Confidence                      1111  122  567777777777655555 46666777777777653221 11        112444444


Q ss_pred             eeccccchhhhcCCCCcCCcccEEEEecCcchhhcCCCCCcccEEEEecCCcccccCCCccccceeccccchhhhhhcCC
Q 039689          432 LFFVDICSKLQGTLPERLLLLEKLNIFRCEQLLVTLQCLPALRELEIDGCKGVVLSSPTDLSSLKLVHSRDMAKEVFEQG  511 (763)
Q Consensus       432 L~l~~~~~~l~~~~~~~~~~L~~L~l~~~~~l~~~l~~l~~L~~L~l~~~~~~~~~~~~~L~~L~~~~~~~~~~~~~~~~  511 (763)
                      |++.+                       |.--...+..+++|++|++++|.....+                     ...
T Consensus       196 L~l~~-----------------------N~l~~~~l~~l~~L~~L~Ls~N~l~~ip---------------------~~~  231 (457)
T 3bz5_A          196 LNCDT-----------------------NNITKLDLNQNIQLTFLDCSSNKLTEID---------------------VTP  231 (457)
T ss_dssp             EECCS-----------------------SCCSCCCCTTCTTCSEEECCSSCCSCCC---------------------CTT
T ss_pred             EECcC-----------------------CcCCeeccccCCCCCEEECcCCcccccC---------------------ccc
Confidence            44443                       3221113455666777777766543321                     144


Q ss_pred             CCCCceEEEeccCCccccccccCcCCccccccCceeeccCCchhhhcceeeeccCCCcccccchhhhcCCCCcceEEEec
Q 039689          512 LPKLERLEIQHVREQTYLWRSETRLPQDIRSLNRLQISRCPQLISLLRTVKIEDCNALESLPEAWMHNSNSSLESLKIRS  591 (763)
Q Consensus       512 ~~~L~~L~l~~~~~l~~l~~~~~~~p~~l~~L~~L~l~~~~~l~~~L~~L~l~~~~~l~~l~~~~~~~~l~~L~~L~l~~  591 (763)
                      +++|+.|++++|....       ..+..+++|+.|+++...     |+.|++++|..++.+|..    .+++|+.|++++
T Consensus       232 l~~L~~L~l~~N~l~~-------~~~~~l~~L~~L~l~~n~-----L~~L~l~~n~~~~~~~~~----~l~~L~~L~Ls~  295 (457)
T 3bz5_A          232 LTQLTYFDCSVNPLTE-------LDVSTLSKLTTLHCIQTD-----LLEIDLTHNTQLIYFQAE----GCRKIKELDVTH  295 (457)
T ss_dssp             CTTCSEEECCSSCCSC-------CCCTTCTTCCEEECTTCC-----CSCCCCTTCTTCCEEECT----TCTTCCCCCCTT
T ss_pred             cCCCCEEEeeCCcCCC-------cCHHHCCCCCEEeccCCC-----CCEEECCCCccCCccccc----ccccCCEEECCC
Confidence            5667777777765432       123456667766665543     777777777766666632    367777888877


Q ss_pred             CccccccCC---------CCCCCCccEEEEccCCCCCCCchhhhcCCCCCcceEeeccC
Q 039689          592 CNSLVSFPD---------FALPSQLRTVTIKGCDALESLPEAWMQNSSTSLESLAIDSC  641 (763)
Q Consensus       592 c~~l~~~~~---------~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~c  641 (763)
                      |..++.+|.         +...++|++|++++| .++.++  +  ..+++|+.|++++|
T Consensus       296 n~~l~~l~~~~~~L~~L~l~~~~~L~~L~L~~N-~l~~l~--l--~~l~~L~~L~l~~N  349 (457)
T 3bz5_A          296 NTQLYLLDCQAAGITELDLSQNPKLVYLYLNNT-ELTELD--V--SHNTKLKSLSCVNA  349 (457)
T ss_dssp             CTTCCEEECTTCCCSCCCCTTCTTCCEEECTTC-CCSCCC--C--TTCTTCSEEECCSS
T ss_pred             CcccceeccCCCcceEechhhcccCCEEECCCC-cccccc--c--ccCCcCcEEECCCC
Confidence            776665552         122345666666665 333342  2  45666666666665

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=99.93  E-value=1.9e-24  Score=236.56  Aligned_cols=98  Identities=22%  Similarity=0.367  Sum_probs=77.5

Q ss_pred             CCcccEEEecCCCCCccCcccCCCCcccEEecCCCCchhcchhhhhcccccEEeeccccccccccccccCcccccccccC
Q 039689          196 LPRLRVFSLRGYNIFELPKAIENLKHLRFLDLSTTKIEILRESINTLYNLHTLLLEDCRRLKKLCKDMGNLTKLHHLNNS  275 (763)
Q Consensus       196 l~~Lr~L~L~~~~i~~lp~~~~~l~~L~~L~L~~~~i~~lp~~~~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l~  275 (763)
                      +++++.|+++++.+..+|. +..+++|++|+|++|.++.+|+ ++++++|++|++++| .+..+|. ++++++|++|+++
T Consensus        45 l~~l~~L~l~~~~i~~l~~-~~~l~~L~~L~Ls~n~l~~~~~-~~~l~~L~~L~l~~n-~l~~~~~-~~~l~~L~~L~L~  120 (466)
T 1o6v_A           45 LDQVTTLQADRLGIKSIDG-VEYLNNLTQINFSNNQLTDITP-LKNLTKLVDILMNNN-QIADITP-LANLTNLTGLTLF  120 (466)
T ss_dssp             HHTCCEEECCSSCCCCCTT-GGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSS-CCCCCGG-GTTCTTCCEEECC
T ss_pred             hccccEEecCCCCCccCcc-hhhhcCCCEEECCCCccCCchh-hhccccCCEEECCCC-ccccChh-hcCCCCCCEEECC
Confidence            5678899999999888874 7889999999999999998877 899999999999984 6777766 8899999999999


Q ss_pred             CcccccccccCCCccCCCceeeec
Q 039689          276 NVGSLEEMLMLKSLVHLQGTLEIS  299 (763)
Q Consensus       276 ~~~~l~~l~~l~~L~~L~~~L~~~  299 (763)
                      +|. +..++.+..+++|+ .|.+.
T Consensus       121 ~n~-l~~~~~~~~l~~L~-~L~l~  142 (466)
T 1o6v_A          121 NNQ-ITDIDPLKNLTNLN-RLELS  142 (466)
T ss_dssp             SSC-CCCCGGGTTCTTCS-EEEEE
T ss_pred             CCC-CCCChHHcCCCCCC-EEECC
Confidence            887 66555555555554 44443

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=99.92  E-value=2.4e-24  Score=235.75  Aligned_cols=327  Identities=18%  Similarity=0.221  Sum_probs=198.9

Q ss_pred             ccCCCCcccEEEecCCCCCccCcccCCCCcccEEecCCCCchhcchhhhhcccccEEeeccccccccccccccCcccccc
Q 039689          192 RLLNLPRLRVFSLRGYNIFELPKAIENLKHLRFLDLSTTKIEILRESINTLYNLHTLLLEDCRRLKKLCKDMGNLTKLHH  271 (763)
Q Consensus       192 ~~~~l~~Lr~L~L~~~~i~~lp~~~~~l~~L~~L~L~~~~i~~lp~~~~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~  271 (763)
                      .+..+++|++|++++|.++.+|. +..+++|++|++++|.++.++. ++++++|++|++++| .+..+|. ++++++|++
T Consensus        63 ~~~~l~~L~~L~Ls~n~l~~~~~-~~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~L~~n-~l~~~~~-~~~l~~L~~  138 (466)
T 1o6v_A           63 GVEYLNNLTQINFSNNQLTDITP-LKNLTKLVDILMNNNQIADITP-LANLTNLTGLTLFNN-QITDIDP-LKNLTNLNR  138 (466)
T ss_dssp             TGGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSS-CCCCCGG-GTTCTTCSE
T ss_pred             chhhhcCCCEEECCCCccCCchh-hhccccCCEEECCCCccccChh-hcCCCCCCEEECCCC-CCCCChH-HcCCCCCCE
Confidence            46778999999999999999977 9999999999999999999887 999999999999995 7888876 999999999


Q ss_pred             cccCCcccccccccCCCccCCCceeeecCcccccCcccchhhhhcCcccccceEEeeccCCCCCCccHHHHhhcCCCCCC
Q 039689          272 LNNSNVGSLEEMLMLKSLVHLQGTLEISRLENVKGVGDASEVQLNSKVNLKALYLQWGVRDAVEPKTETQVIDMLKPHQK  351 (763)
Q Consensus       272 L~l~~~~~l~~l~~l~~L~~L~~~L~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~l~~l~~  351 (763)
                      |++++|. +..++.+..+++|+ .+.+.+  ..   ...  ..+.++++|+.|++++|..                    
T Consensus       139 L~l~~n~-l~~~~~~~~l~~L~-~L~l~~--~~---~~~--~~~~~l~~L~~L~l~~n~l--------------------  189 (466)
T 1o6v_A          139 LELSSNT-ISDISALSGLTSLQ-QLSFGN--QV---TDL--KPLANLTTLERLDISSNKV--------------------  189 (466)
T ss_dssp             EEEEEEE-ECCCGGGTTCTTCS-EEEEEE--SC---CCC--GGGTTCTTCCEEECCSSCC--------------------
T ss_pred             EECCCCc-cCCChhhccCCccc-EeecCC--cc---cCc--hhhccCCCCCEEECcCCcC--------------------
Confidence            9999997 77777666666666 555532  11   111  1244445555555543321                    


Q ss_pred             ceEEEeeeCCCCCCCccCCCCCCCceEEEEeccCCCCCCCCCCCCCCCCcceecccCCceEeCccccCCCcCCCCCCcce
Q 039689          352 LELTITGYGGTKFPIWLGDSLFSKLMLLKFDNCGTCTSLPSVGQLPFLKDPVISGMGRVKIVGSEFYGSSCSVSFPSLET  431 (763)
Q Consensus       352 L~L~~~~~~~~~~p~~~~~~~~~~L~~L~l~~~~~~~~l~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~f~~L~~  431 (763)
                                ..++ .+..  +++|+.|++++|... .+++++.+++|+.|+++++..... +                 
T Consensus       190 ----------~~~~-~l~~--l~~L~~L~l~~n~l~-~~~~~~~l~~L~~L~l~~n~l~~~-~-----------------  237 (466)
T 1o6v_A          190 ----------SDIS-VLAK--LTNLESLIATNNQIS-DITPLGILTNLDELSLNGNQLKDI-G-----------------  237 (466)
T ss_dssp             ----------CCCG-GGGG--CTTCSEEECCSSCCC-CCGGGGGCTTCCEEECCSSCCCCC-G-----------------
T ss_pred             ----------CCCh-hhcc--CCCCCEEEecCCccc-ccccccccCCCCEEECCCCCcccc-h-----------------
Confidence                      1111 1111  455666666655422 222344455555555554321110 0                 


Q ss_pred             eeccccchhhhcCCCCcCCcccEEEEecCcchh-hcCCCCCcccEEEEecCCcccccCCCccccceeccccchhhhhhcC
Q 039689          432 LFFVDICSKLQGTLPERLLLLEKLNIFRCEQLL-VTLQCLPALRELEIDGCKGVVLSSPTDLSSLKLVHSRDMAKEVFEQ  510 (763)
Q Consensus       432 L~l~~~~~~l~~~~~~~~~~L~~L~l~~~~~l~-~~l~~l~~L~~L~l~~~~~~~~~~~~~L~~L~~~~~~~~~~~~~~~  510 (763)
                                   ....+++|+.|++.+|.... ..+..+++|++|++++|.......                    +.
T Consensus       238 -------------~l~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~~~--------------------~~  284 (466)
T 1o6v_A          238 -------------TLASLTNLTDLDLANNQISNLAPLSGLTKLTELKLGANQISNISP--------------------LA  284 (466)
T ss_dssp             -------------GGGGCTTCSEEECCSSCCCCCGGGTTCTTCSEEECCSSCCCCCGG--------------------GT
T ss_pred             -------------hhhcCCCCCEEECCCCccccchhhhcCCCCCEEECCCCccCcccc--------------------cc
Confidence                         00123445555555443111 125566777777777765332111                    24


Q ss_pred             CCCCCceEEEeccCCccccccccCcCCccccccCceeeccCCchhhhcceeeeccCCCcccccchhhhcCCCCcceEEEe
Q 039689          511 GLPKLERLEIQHVREQTYLWRSETRLPQDIRSLNRLQISRCPQLISLLRTVKIEDCNALESLPEAWMHNSNSSLESLKIR  590 (763)
Q Consensus       511 ~~~~L~~L~l~~~~~l~~l~~~~~~~p~~l~~L~~L~l~~~~~l~~~L~~L~l~~~~~l~~l~~~~~~~~l~~L~~L~l~  590 (763)
                      .+++|++|++++|......     . ...+++               |+.|++++| .+..+++.   ..+++|++|+++
T Consensus       285 ~l~~L~~L~L~~n~l~~~~-----~-~~~l~~---------------L~~L~L~~n-~l~~~~~~---~~l~~L~~L~l~  339 (466)
T 1o6v_A          285 GLTALTNLELNENQLEDIS-----P-ISNLKN---------------LTYLTLYFN-NISDISPV---SSLTKLQRLFFY  339 (466)
T ss_dssp             TCTTCSEEECCSSCCSCCG-----G-GGGCTT---------------CSEEECCSS-CCSCCGGG---GGCTTCCEEECC
T ss_pred             CCCccCeEEcCCCcccCch-----h-hcCCCC---------------CCEEECcCC-cCCCchhh---ccCccCCEeECC
Confidence            5677777777777543210     0 022333               444444443 34444431   236778888887


Q ss_pred             cCccccccCCCCCCCCccEEEEccCCCCCCCchhhhcCCCCCcceEeeccCCCcccc
Q 039689          591 SCNSLVSFPDFALPSQLRTVTIKGCDALESLPEAWMQNSSTSLESLAIDSCDSLTYI  647 (763)
Q Consensus       591 ~c~~l~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~l  647 (763)
                      +|. +..++.+..+++|+.|++++|...+..|  +  ..+++|+.|++++| .+..+
T Consensus       340 ~n~-l~~~~~l~~l~~L~~L~l~~n~l~~~~~--~--~~l~~L~~L~l~~n-~~~~~  390 (466)
T 1o6v_A          340 NNK-VSDVSSLANLTNINWLSAGHNQISDLTP--L--ANLTRITQLGLNDQ-AWTNA  390 (466)
T ss_dssp             SSC-CCCCGGGTTCTTCCEEECCSSCCCBCGG--G--TTCTTCCEEECCCE-EEECC
T ss_pred             CCc-cCCchhhccCCCCCEEeCCCCccCccch--h--hcCCCCCEEeccCC-cccCC
Confidence            764 5556666777788888888775444333  3  67777888888777 44443

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=99.92  E-value=8.1e-24  Score=231.50  Aligned_cols=82  Identities=20%  Similarity=0.257  Sum_probs=51.4

Q ss_pred             CcccEEEecCCCCCcc-CcccCCCCcccEEecCCCCch-hc-chhhhhcccccEEeeccccccccccccccCcccccccc
Q 039689          197 PRLRVFSLRGYNIFEL-PKAIENLKHLRFLDLSTTKIE-IL-RESINTLYNLHTLLLEDCRRLKKLCKDMGNLTKLHHLN  273 (763)
Q Consensus       197 ~~Lr~L~L~~~~i~~l-p~~~~~l~~L~~L~L~~~~i~-~l-p~~~~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~  273 (763)
                      ++|++|++++|.++.+ |..|+++++|++|+|++|.+. .+ |..|+++++|++|++++|......|..++++++|++|+
T Consensus        30 ~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~  109 (455)
T 3v47_A           30 AHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLETGAFNGLANLEVLT  109 (455)
T ss_dssp             TTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCTTCEECTTTTTTCTTCCEEE
T ss_pred             CccCEEEecCCccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCCCccCccChhhccCcccCCEEe
Confidence            5666777776666665 556666777777777766664 34 44566667777777766433333355566666666666


Q ss_pred             cCCcc
Q 039689          274 NSNVG  278 (763)
Q Consensus       274 l~~~~  278 (763)
                      +++|.
T Consensus       110 L~~n~  114 (455)
T 3v47_A          110 LTQCN  114 (455)
T ss_dssp             CTTSC
T ss_pred             CCCCC
Confidence            66665

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=99.91  E-value=5.7e-24  Score=232.74  Aligned_cols=371  Identities=13%  Similarity=0.105  Sum_probs=190.2

Q ss_pred             cEEEecCCCCCccCcccCCCCcccEEecCCCCchhc-chhhhhcccccEEeecccccccccc-ccccCcccccccccCCc
Q 039689          200 RVFSLRGYNIFELPKAIENLKHLRFLDLSTTKIEIL-RESINTLYNLHTLLLEDCRRLKKLC-KDMGNLTKLHHLNNSNV  277 (763)
Q Consensus       200 r~L~L~~~~i~~lp~~~~~l~~L~~L~L~~~~i~~l-p~~~~~L~~L~~L~L~~~~~l~~lp-~~i~~L~~L~~L~l~~~  277 (763)
                      +.++.+++.++.+|. +  .++|++|+|++|.++.+ |..|+++++|++|++++|.....+| ..|+++++|++|++++|
T Consensus        13 ~~~~c~~~~l~~lp~-l--~~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n   89 (455)
T 3v47_A           13 YNAICINRGLHQVPE-L--PAHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYN   89 (455)
T ss_dssp             TEEECCSSCCSSCCC-C--CTTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTC
T ss_pred             cccCcCCCCcccCCC-C--CCccCEEEecCCccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCCC
Confidence            467778888888887 3  38899999999999977 7789999999999999965544664 45899999999999999


Q ss_pred             cccccc-c-cCCCccCCCceeeecCcccccCcccchh--hhhcCcccccceEEeeccCCCCCCccHHHHhhcCCCCCCce
Q 039689          278 GSLEEM-L-MLKSLVHLQGTLEISRLENVKGVGDASE--VQLNSKVNLKALYLQWGVRDAVEPKTETQVIDMLKPHQKLE  353 (763)
Q Consensus       278 ~~l~~l-~-~l~~L~~L~~~L~~~~~~~~~~~~~~~~--~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~l~~l~~L~  353 (763)
                      . +..+ | .+.++++|+ .|.+.+..    +.....  ..+..+++|+.|++++|..                      
T Consensus        90 ~-l~~~~~~~~~~l~~L~-~L~L~~n~----l~~~~~~~~~~~~l~~L~~L~L~~n~l----------------------  141 (455)
T 3v47_A           90 Q-FLQLETGAFNGLANLE-VLTLTQCN----LDGAVLSGNFFKPLTSLEMLVLRDNNI----------------------  141 (455)
T ss_dssp             T-TCEECTTTTTTCTTCC-EEECTTSC----CBTHHHHSSTTTTCTTCCEEECCSSBC----------------------
T ss_pred             c-cCccChhhccCcccCC-EEeCCCCC----CCccccCcccccCcccCCEEECCCCcc----------------------
Confidence            7 5544 2 255555555 55544321    111011  1133344444444433321                      


Q ss_pred             EEEeeeCCCCC-CCc-cCCCCCCCceEEEEeccCCCCCCC-CCCCC--CCCCcceecccCCceEeCccccCCCcCCCCCC
Q 039689          354 LTITGYGGTKF-PIW-LGDSLFSKLMLLKFDNCGTCTSLP-SVGQL--PFLKDPVISGMGRVKIVGSEFYGSSCSVSFPS  428 (763)
Q Consensus       354 L~~~~~~~~~~-p~~-~~~~~~~~L~~L~l~~~~~~~~l~-~l~~l--~~L~~L~l~~~~~l~~~~~~~~~~~~~~~f~~  428 (763)
                              ..+ |.. +..  +++|+.|++++|......+ .+..+  ++|+.|+++++.........+ +         
T Consensus       142 --------~~~~~~~~~~~--l~~L~~L~L~~n~l~~~~~~~l~~l~~~~L~~L~l~~n~l~~~~~~~~-~---------  201 (455)
T 3v47_A          142 --------KKIQPASFFLN--MRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWL-G---------  201 (455)
T ss_dssp             --------CSCCCCGGGGG--CTTCCEEECTTCCBSCCCTTTSGGGTTCEEEEEECTTCBCTTCSTTCT-T---------
T ss_pred             --------CccCcccccCC--CCcccEEeCCCCcccccChhhhhccccccccccccccCcccccchhhc-c---------
Confidence                    111 111 222  3444555554443322222 22222  233333333322111000000 0         


Q ss_pred             cceeeccccchhhhcCCCCcCCcccEEEEecCcchh---hc---CCCCCcccEEEEecCCcccccC-CCccccceecccc
Q 039689          429 LETLFFVDICSKLQGTLPERLLLLEKLNIFRCEQLL---VT---LQCLPALRELEIDGCKGVVLSS-PTDLSSLKLVHSR  501 (763)
Q Consensus       429 L~~L~l~~~~~~l~~~~~~~~~~L~~L~l~~~~~l~---~~---l~~l~~L~~L~l~~~~~~~~~~-~~~L~~L~~~~~~  501 (763)
                                .... ..+..+++|++|++++|....   ..   ....++|+.|++++|....... ...+....     
T Consensus       202 ----------~~~~-~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~-----  265 (455)
T 3v47_A          202 ----------WEKC-GNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPD-----  265 (455)
T ss_dssp             ----------HHHH-CCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECTTCTTTSCCTTCCSSCCCC-----
T ss_pred             ----------cccc-ccccccceeeeEecCCCcccccchhhhhccccccceeeEeeccccccccccchhhhccCc-----
Confidence                      0000 001123566666666664211   11   1123677777777764332110 00000000     


Q ss_pred             chhhhhhcCCCCCCceEEEeccCCccccccccCcCCccccccCceeeccCCchhhhcceeeeccCCCcccccchhhhcCC
Q 039689          502 DMAKEVFEQGLPKLERLEIQHVREQTYLWRSETRLPQDIRSLNRLQISRCPQLISLLRTVKIEDCNALESLPEAWMHNSN  581 (763)
Q Consensus       502 ~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~p~~l~~L~~L~l~~~~~l~~~L~~L~l~~~~~l~~l~~~~~~~~l  581 (763)
                      ....  .....++|++|++++|....       ..|..+..+..            |++|++++ +.++.+++..+. .+
T Consensus       266 ~~~~--~~~~~~~L~~L~l~~n~l~~-------~~~~~~~~l~~------------L~~L~Ls~-n~l~~~~~~~~~-~l  322 (455)
T 3v47_A          266 NFTF--KGLEASGVKTCDLSKSKIFA-------LLKSVFSHFTD------------LEQLTLAQ-NEINKIDDNAFW-GL  322 (455)
T ss_dssp             TTTT--GGGTTSCCCEEECCSSCCCE-------ECTTTTTTCTT------------CCEEECTT-SCCCEECTTTTT-TC
T ss_pred             cccc--ccccccCceEEEecCccccc-------cchhhcccCCC------------CCEEECCC-CcccccChhHhc-Cc
Confidence            0000  00124677788887776543       22322222221            34444444 445444433222 36


Q ss_pred             CCcceEEEecCccccccC-C-CCCCCCccEEEEccCCCCCCCchhhhcCCCCCcceEeeccCCCccccccccC--CCCCc
Q 039689          582 SSLESLKIRSCNSLVSFP-D-FALPSQLRTVTIKGCDALESLPEAWMQNSSTSLESLAIDSCDSLTYIARIQL--PPSLK  657 (763)
Q Consensus       582 ~~L~~L~l~~c~~l~~~~-~-~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~--~~~L~  657 (763)
                      ++|++|++++|.. +.++ . +..+++|++|++++|...+..|..+  ..+++|+.|++++| .++.++...+  .++|+
T Consensus       323 ~~L~~L~Ls~N~l-~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~--~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~  398 (455)
T 3v47_A          323 THLLKLNLSQNFL-GSIDSRMFENLDKLEVLDLSYNHIRALGDQSF--LGLPNLKELALDTN-QLKSVPDGIFDRLTSLQ  398 (455)
T ss_dssp             TTCCEEECCSSCC-CEECGGGGTTCTTCCEEECCSSCCCEECTTTT--TTCTTCCEEECCSS-CCSCCCTTTTTTCTTCC
T ss_pred             ccCCEEECCCCcc-CCcChhHhcCcccCCEEECCCCcccccChhhc--cccccccEEECCCC-ccccCCHhHhccCCccc
Confidence            7777777777653 4443 2 4566777888887774433335455  66777888888776 6666665433  34555


Q ss_pred             EEEEecC
Q 039689          658 RLIIFRC  664 (763)
Q Consensus       658 ~L~l~~c  664 (763)
                      .|++.++
T Consensus       399 ~L~l~~N  405 (455)
T 3v47_A          399 KIWLHTN  405 (455)
T ss_dssp             EEECCSS
T ss_pred             EEEccCC
Confidence            5555443

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=99.91  E-value=1.7e-23  Score=226.90  Aligned_cols=326  Identities=17%  Similarity=0.190  Sum_probs=203.9

Q ss_pred             ccCCCCcccEEEecCCCCCccCcccCCCCcccEEecCCCCchhcchhhhhcccccEEeeccccccccccccccCcccccc
Q 039689          192 RLLNLPRLRVFSLRGYNIFELPKAIENLKHLRFLDLSTTKIEILRESINTLYNLHTLLLEDCRRLKKLCKDMGNLTKLHH  271 (763)
Q Consensus       192 ~~~~l~~Lr~L~L~~~~i~~lp~~~~~l~~L~~L~L~~~~i~~lp~~~~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~  271 (763)
                      .+..+++|++|++++|.++.+|  ++.+++|++|++++|.++.+|  ++++++|++|++++| .+..+|  ++.+++|++
T Consensus        59 ~l~~l~~L~~L~Ls~n~l~~~~--~~~l~~L~~L~Ls~N~l~~~~--~~~l~~L~~L~L~~N-~l~~l~--~~~l~~L~~  131 (457)
T 3bz5_A           59 GIEKLTGLTKLICTSNNITTLD--LSQNTNLTYLACDSNKLTNLD--VTPLTKLTYLNCDTN-KLTKLD--VSQNPLLTY  131 (457)
T ss_dssp             TGGGCTTCSEEECCSSCCSCCC--CTTCTTCSEEECCSSCCSCCC--CTTCTTCCEEECCSS-CCSCCC--CTTCTTCCE
T ss_pred             hhcccCCCCEEEccCCcCCeEc--cccCCCCCEEECcCCCCceee--cCCCCcCCEEECCCC-cCCeec--CCCCCcCCE
Confidence            5788999999999999999986  899999999999999999986  899999999999994 777776  899999999


Q ss_pred             cccCCcccccccccCCCccCCCceeeecCcccccCcccchhhhhcCcccccceEEeeccCCCCCCccHHHHhhcCCCCCC
Q 039689          272 LNNSNVGSLEEMLMLKSLVHLQGTLEISRLENVKGVGDASEVQLNSKVNLKALYLQWGVRDAVEPKTETQVIDMLKPHQK  351 (763)
Q Consensus       272 L~l~~~~~l~~l~~l~~L~~L~~~L~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~l~~l~~  351 (763)
                      |++++|. +..++ ++.+++|+ .+.+.........      .+..+++|+.|++++|.                     
T Consensus       132 L~l~~N~-l~~l~-l~~l~~L~-~L~l~~n~~~~~~------~~~~l~~L~~L~ls~n~---------------------  181 (457)
T 3bz5_A          132 LNCARNT-LTEID-VSHNTQLT-ELDCHLNKKITKL------DVTPQTQLTTLDCSFNK---------------------  181 (457)
T ss_dssp             EECTTSC-CSCCC-CTTCTTCC-EEECTTCSCCCCC------CCTTCTTCCEEECCSSC---------------------
T ss_pred             EECCCCc-cceec-cccCCcCC-EEECCCCCccccc------ccccCCcCCEEECCCCc---------------------
Confidence            9999998 66654 56666666 5655543222211      24445555555554442                     


Q ss_pred             ceEEEeeeCCCCCCCccCCCCCCCceEEEEeccCCCCCCCCCCCCCCCCcceecccCCceEeCccccCCCcCCCCCCcce
Q 039689          352 LELTITGYGGTKFPIWLGDSLFSKLMLLKFDNCGTCTSLPSVGQLPFLKDPVISGMGRVKIVGSEFYGSSCSVSFPSLET  431 (763)
Q Consensus       352 L~L~~~~~~~~~~p~~~~~~~~~~L~~L~l~~~~~~~~l~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~f~~L~~  431 (763)
                               ...+|  +..  +++|+.|++++|.... + +++.+++|+.|++++|.... ++        ...+++|+.
T Consensus       182 ---------l~~l~--l~~--l~~L~~L~l~~N~l~~-~-~l~~l~~L~~L~Ls~N~l~~-ip--------~~~l~~L~~  237 (457)
T 3bz5_A          182 ---------ITELD--VSQ--NKLLNRLNCDTNNITK-L-DLNQNIQLTFLDCSSNKLTE-ID--------VTPLTQLTY  237 (457)
T ss_dssp             ---------CCCCC--CTT--CTTCCEEECCSSCCSC-C-CCTTCTTCSEEECCSSCCSC-CC--------CTTCTTCSE
T ss_pred             ---------cceec--ccc--CCCCCEEECcCCcCCe-e-ccccCCCCCEEECcCCcccc-cC--------ccccCCCCE
Confidence                     22232  222  5566666666664322 2 35556666666666543322 11        122455555


Q ss_pred             eeccccchhhhcCCCCcCCcccEEEEecCcchhhcCCCCCcccEEEEecCCcccccCCCccccceeccccchhhhhhcCC
Q 039689          432 LFFVDICSKLQGTLPERLLLLEKLNIFRCEQLLVTLQCLPALRELEIDGCKGVVLSSPTDLSSLKLVHSRDMAKEVFEQG  511 (763)
Q Consensus       432 L~l~~~~~~l~~~~~~~~~~L~~L~l~~~~~l~~~l~~l~~L~~L~l~~~~~~~~~~~~~L~~L~~~~~~~~~~~~~~~~  511 (763)
                      |++.+  +.+.+..+..+++|+.|.+.++           +|+.|++++|....                    ......
T Consensus       238 L~l~~--N~l~~~~~~~l~~L~~L~l~~n-----------~L~~L~l~~n~~~~--------------------~~~~~~  284 (457)
T 3bz5_A          238 FDCSV--NPLTELDVSTLSKLTTLHCIQT-----------DLLEIDLTHNTQLI--------------------YFQAEG  284 (457)
T ss_dssp             EECCS--SCCSCCCCTTCTTCCEEECTTC-----------CCSCCCCTTCTTCC--------------------EEECTT
T ss_pred             EEeeC--CcCCCcCHHHCCCCCEEeccCC-----------CCCEEECCCCccCC--------------------cccccc
Confidence            55554  2333222333444444433321           23334444433111                    011256


Q ss_pred             CCCCceEEEeccCCccccccccCcCCccccccCceeeccCCchhhhcceeeeccCCCcccccchhhhcCCCCcceEEEec
Q 039689          512 LPKLERLEIQHVREQTYLWRSETRLPQDIRSLNRLQISRCPQLISLLRTVKIEDCNALESLPEAWMHNSNSSLESLKIRS  591 (763)
Q Consensus       512 ~~~L~~L~l~~~~~l~~l~~~~~~~p~~l~~L~~L~l~~~~~l~~~L~~L~l~~~~~l~~l~~~~~~~~l~~L~~L~l~~  591 (763)
                      +++|+.|++++|..++       .+|...++|+.|++++++.    |+.|++++ +.++.++  +  ..+++|+.|++++
T Consensus       285 l~~L~~L~Ls~n~~l~-------~l~~~~~~L~~L~l~~~~~----L~~L~L~~-N~l~~l~--l--~~l~~L~~L~l~~  348 (457)
T 3bz5_A          285 CRKIKELDVTHNTQLY-------LLDCQAAGITELDLSQNPK----LVYLYLNN-TELTELD--V--SHNTKLKSLSCVN  348 (457)
T ss_dssp             CTTCCCCCCTTCTTCC-------EEECTTCCCSCCCCTTCTT----CCEEECTT-CCCSCCC--C--TTCTTCSEEECCS
T ss_pred             cccCCEEECCCCcccc-------eeccCCCcceEechhhccc----CCEEECCC-Ccccccc--c--ccCCcCcEEECCC
Confidence            7899999999998776       5666677888888888876    88899888 4566664  2  2378899999977


Q ss_pred             CccccccCCCCCCCCccEEEEccCCCCCCCchhhhcCCCCCcceEeeccC
Q 039689          592 CNSLVSFPDFALPSQLRTVTIKGCDALESLPEAWMQNSSTSLESLAIDSC  641 (763)
Q Consensus       592 c~~l~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~c  641 (763)
                      |. +..++      .|..|++++|..-+.       ..+..|+.++++++
T Consensus       349 N~-l~~l~------~L~~L~l~~n~l~g~-------~~~~~l~~l~l~~N  384 (457)
T 3bz5_A          349 AH-IQDFS------SVGKIPALNNNFEAE-------GQTITMPKETLTNN  384 (457)
T ss_dssp             SC-CCBCT------TGGGSSGGGTSEEEE-------EEEEECCCBCCBTT
T ss_pred             CC-CCCcc------ccccccccCCcEEec-------ceeeecCccccccC
Confidence            55 44443      334444444321111       12345666666666

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=99.90  E-value=2.7e-23  Score=218.55  Aligned_cols=87  Identities=20%  Similarity=0.355  Sum_probs=74.5

Q ss_pred             CCCCcccEEEecCCCCCccCcccCCCCcccEEecCCCCchhcchhhhhcccccEEeeccccccccccccccCcccccccc
Q 039689          194 LNLPRLRVFSLRGYNIFELPKAIENLKHLRFLDLSTTKIEILRESINTLYNLHTLLLEDCRRLKKLCKDMGNLTKLHHLN  273 (763)
Q Consensus       194 ~~l~~Lr~L~L~~~~i~~lp~~~~~l~~L~~L~L~~~~i~~lp~~~~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~  273 (763)
                      ..+++|++|+++++.+..+|. +..+++|++|++++|.++.+|. ++.+++|++|++++| .+..+| .++.+++|++|+
T Consensus        41 ~~l~~L~~L~l~~~~i~~~~~-~~~~~~L~~L~l~~n~i~~~~~-~~~l~~L~~L~L~~n-~i~~~~-~~~~l~~L~~L~  116 (347)
T 4fmz_A           41 EELESITKLVVAGEKVASIQG-IEYLTNLEYLNLNGNQITDISP-LSNLVKLTNLYIGTN-KITDIS-ALQNLTNLRELY  116 (347)
T ss_dssp             HHHTTCSEEECCSSCCCCCTT-GGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSS-CCCCCG-GGTTCTTCSEEE
T ss_pred             hhcccccEEEEeCCccccchh-hhhcCCccEEEccCCccccchh-hhcCCcCCEEEccCC-cccCch-HHcCCCcCCEEE
Confidence            457889999999999988865 8889999999999999999877 999999999999995 677776 599999999999


Q ss_pred             cCCccccccccc
Q 039689          274 NSNVGSLEEMLM  285 (763)
Q Consensus       274 l~~~~~l~~l~~  285 (763)
                      +++|. +..++.
T Consensus       117 l~~n~-i~~~~~  127 (347)
T 4fmz_A          117 LNEDN-ISDISP  127 (347)
T ss_dssp             CTTSC-CCCCGG
T ss_pred             CcCCc-ccCchh
Confidence            99987 544443

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=99.90  E-value=1.4e-22  Score=216.69  Aligned_cols=83  Identities=16%  Similarity=0.264  Sum_probs=65.8

Q ss_pred             CCCcccEEEecCCCCCccCcc-cCCCCcccEEecCCCCchhcc-hhhhhcccccEEeecccccccccc-ccccCcccccc
Q 039689          195 NLPRLRVFSLRGYNIFELPKA-IENLKHLRFLDLSTTKIEILR-ESINTLYNLHTLLLEDCRRLKKLC-KDMGNLTKLHH  271 (763)
Q Consensus       195 ~l~~Lr~L~L~~~~i~~lp~~-~~~l~~L~~L~L~~~~i~~lp-~~~~~L~~L~~L~L~~~~~l~~lp-~~i~~L~~L~~  271 (763)
                      .++++++|+++++.++.+|.. |..+++|++|+|++|.++.+| ..|+.+++|++|++++| .+..+| ..++++++|++
T Consensus        43 ~l~~l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~  121 (390)
T 3o6n_A           43 TLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFN-AIRYLPPHVFQNVPLLTV  121 (390)
T ss_dssp             GGCCCSEEEEESCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCE
T ss_pred             ccCCceEEEecCCchhhCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCC-CCCcCCHHHhcCCCCCCE
Confidence            357888888888888888754 678888888888888888775 47888888888888884 555554 44788888888


Q ss_pred             cccCCcc
Q 039689          272 LNNSNVG  278 (763)
Q Consensus       272 L~l~~~~  278 (763)
                      |++++|.
T Consensus       122 L~L~~n~  128 (390)
T 3o6n_A          122 LVLERND  128 (390)
T ss_dssp             EECCSSC
T ss_pred             EECCCCc
Confidence            8888886

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=99.89  E-value=1.1e-22  Score=213.85  Aligned_cols=66  Identities=23%  Similarity=0.322  Sum_probs=56.2

Q ss_pred             ccCCCCcccEEecCCCCchhcchhhhhcccccEEeeccccccccccccccCcccccccccCCcccccccc
Q 039689          215 AIENLKHLRFLDLSTTKIEILRESINTLYNLHTLLLEDCRRLKKLCKDMGNLTKLHHLNNSNVGSLEEML  284 (763)
Q Consensus       215 ~~~~l~~L~~L~L~~~~i~~lp~~~~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~l~  284 (763)
                      .+..+++|++|+++++.+..+|. ++.+++|++|++++| .+..+|. +..+++|++|++++|. +..++
T Consensus        39 ~~~~l~~L~~L~l~~~~i~~~~~-~~~~~~L~~L~l~~n-~i~~~~~-~~~l~~L~~L~L~~n~-i~~~~  104 (347)
T 4fmz_A           39 TQEELESITKLVVAGEKVASIQG-IEYLTNLEYLNLNGN-QITDISP-LSNLVKLTNLYIGTNK-ITDIS  104 (347)
T ss_dssp             CHHHHTTCSEEECCSSCCCCCTT-GGGCTTCCEEECCSS-CCCCCGG-GTTCTTCCEEECCSSC-CCCCG
T ss_pred             cchhcccccEEEEeCCccccchh-hhhcCCccEEEccCC-ccccchh-hhcCCcCCEEEccCCc-ccCch
Confidence            35678999999999999998874 899999999999995 7888877 9999999999999987 54443

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=99.88  E-value=9.9e-22  Score=216.12  Aligned_cols=196  Identities=19%  Similarity=0.186  Sum_probs=102.3

Q ss_pred             CCCceEEEEeccCCCCCCC-CCCCCCCCCcceecccCCceEeCccccCCCcCCCCCCcceeeccccchhhhcCCCCcCCc
Q 039689          373 FSKLMLLKFDNCGTCTSLP-SVGQLPFLKDPVISGMGRVKIVGSEFYGSSCSVSFPSLETLFFVDICSKLQGTLPERLLL  451 (763)
Q Consensus       373 ~~~L~~L~l~~~~~~~~l~-~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~f~~L~~L~l~~~~~~l~~~~~~~~~~  451 (763)
                      +++|+.|++++|......+ .++.+++|+.|++++|.........+                             ..+++
T Consensus       127 l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l-----------------------------~~l~~  177 (477)
T 2id5_A          127 LYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEAL-----------------------------SHLHG  177 (477)
T ss_dssp             CTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSSCCHHHH-----------------------------TTCTT
T ss_pred             cccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCcccChhHh-----------------------------cccCC
Confidence            5677777777775433323 56666667777666643211110000                             12344


Q ss_pred             ccEEEEecCcc---hhhcCCCCCcccEEEEecCCcccccCCCccccceeccccchhhhhhcCCCCCCceEEEeccCCccc
Q 039689          452 LEKLNIFRCEQ---LLVTLQCLPALRELEIDGCKGVVLSSPTDLSSLKLVHSRDMAKEVFEQGLPKLERLEIQHVREQTY  528 (763)
Q Consensus       452 L~~L~l~~~~~---l~~~l~~l~~L~~L~l~~~~~~~~~~~~~L~~L~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~  528 (763)
                      |+.|++.++..   ....+..+++|++|++++|.........                  .....+|++|++++|...  
T Consensus       178 L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~------------------~~~~~~L~~L~l~~n~l~--  237 (477)
T 2id5_A          178 LIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPN------------------CLYGLNLTSLSITHCNLT--  237 (477)
T ss_dssp             CCEEEEESCCCCEECTTCSCSCTTCCEEEEECCTTCCEECTT------------------TTTTCCCSEEEEESSCCC--
T ss_pred             CcEEeCCCCcCcEeChhhcccCcccceeeCCCCccccccCcc------------------cccCccccEEECcCCccc--
Confidence            44444444431   1124556677777777776533211100                  012336777777777532  


Q ss_pred             cccccCcCC----ccccccCceeeccCCchhhhcceeeeccCCCcccccchhhhcCCCCcceEEEecCccccccCC-CCC
Q 039689          529 LWRSETRLP----QDIRSLNRLQISRCPQLISLLRTVKIEDCNALESLPEAWMHNSNSSLESLKIRSCNSLVSFPD-FAL  603 (763)
Q Consensus       529 l~~~~~~~p----~~l~~L~~L~l~~~~~l~~~L~~L~l~~~~~l~~l~~~~~~~~l~~L~~L~l~~c~~l~~~~~-~~~  603 (763)
                            .+|    ..+++|+.               |++++ +.++.++...+. .+++|++|++++|......|. +..
T Consensus       238 ------~~~~~~~~~l~~L~~---------------L~Ls~-n~l~~~~~~~~~-~l~~L~~L~L~~n~l~~~~~~~~~~  294 (477)
T 2id5_A          238 ------AVPYLAVRHLVYLRF---------------LNLSY-NPISTIEGSMLH-ELLRLQEIQLVGGQLAVVEPYAFRG  294 (477)
T ss_dssp             ------SCCHHHHTTCTTCCE---------------EECCS-SCCCEECTTSCT-TCTTCCEEECCSSCCSEECTTTBTT
T ss_pred             ------ccCHHHhcCccccCe---------------eECCC-CcCCccChhhcc-ccccCCEEECCCCccceECHHHhcC
Confidence                  222    22333333               33433 445555544332 367777777776553332232 556


Q ss_pred             CCCccEEEEccCCCCCCCchhhhcCCCCCcceEeeccCC
Q 039689          604 PSQLRTVTIKGCDALESLPEAWMQNSSTSLESLAIDSCD  642 (763)
Q Consensus       604 ~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~c~  642 (763)
                      +++|++|++++| .++.++...+ ..+++|+.|++++|+
T Consensus       295 l~~L~~L~L~~N-~l~~~~~~~~-~~l~~L~~L~l~~N~  331 (477)
T 2id5_A          295 LNYLRVLNVSGN-QLTTLEESVF-HSVGNLETLILDSNP  331 (477)
T ss_dssp             CTTCCEEECCSS-CCSCCCGGGB-SCGGGCCEEECCSSC
T ss_pred             cccCCEEECCCC-cCceeCHhHc-CCCcccCEEEccCCC
Confidence            677777777777 4555555433 566777777777763

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.88  E-value=5e-22  Score=224.11  Aligned_cols=83  Identities=14%  Similarity=0.258  Sum_probs=63.6

Q ss_pred             CCCcccEEEecCCCCCccCc-ccCCCCcccEEecCCCCchhcc-hhhhhcccccEEeecccccccccccc-ccCcccccc
Q 039689          195 NLPRLRVFSLRGYNIFELPK-AIENLKHLRFLDLSTTKIEILR-ESINTLYNLHTLLLEDCRRLKKLCKD-MGNLTKLHH  271 (763)
Q Consensus       195 ~l~~Lr~L~L~~~~i~~lp~-~~~~l~~L~~L~L~~~~i~~lp-~~~~~L~~L~~L~L~~~~~l~~lp~~-i~~L~~L~~  271 (763)
                      .+.++++|++++|.+..+|. .|..+++|++|+|++|.++.+| ..|+.+++|++|+|++| .+..+|+. |+++++|++
T Consensus        49 ~l~~l~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~  127 (597)
T 3oja_B           49 TLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFN-AIRYLPPHVFQNVPLLTV  127 (597)
T ss_dssp             GGCCCSEEEESSCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCE
T ss_pred             cCCCceEEEeeCCCCCCcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCC-cCCCCCHHHHcCCCCCCE
Confidence            35678888888888888864 4677888888888888888775 47888888888888885 45555544 688888888


Q ss_pred             cccCCcc
Q 039689          272 LNNSNVG  278 (763)
Q Consensus       272 L~l~~~~  278 (763)
                      |++++|.
T Consensus       128 L~L~~n~  134 (597)
T 3oja_B          128 LVLERND  134 (597)
T ss_dssp             EECCSSC
T ss_pred             EEeeCCC
Confidence            8888876

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=99.88  E-value=1.1e-21  Score=209.64  Aligned_cols=60  Identities=10%  Similarity=0.241  Sum_probs=53.0

Q ss_pred             CCCcccEEecCCCCchhcchh-hhhcccccEEeeccccccccccc-cccCcccccccccCCcc
Q 039689          218 NLKHLRFLDLSTTKIEILRES-INTLYNLHTLLLEDCRRLKKLCK-DMGNLTKLHHLNNSNVG  278 (763)
Q Consensus       218 ~l~~L~~L~L~~~~i~~lp~~-~~~L~~L~~L~L~~~~~l~~lp~-~i~~L~~L~~L~l~~~~  278 (763)
                      .+.++++|+++++.++.+|.. +..+++|++|++++| .+..+|. .++.+++|++|++++|.
T Consensus        43 ~l~~l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n-~i~~~~~~~~~~l~~L~~L~L~~n~  104 (390)
T 3o6n_A           43 TLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDL-QIEEIDTYAFAYAHTIQKLYMGFNA  104 (390)
T ss_dssp             GGCCCSEEEEESCEESEECTHHHHHCCCCSEEECTTS-CCCEECTTTTTTCTTCCEEECCSSC
T ss_pred             ccCCceEEEecCCchhhCChhHhcccccCcEEECCCC-cccccChhhccCCCCcCEEECCCCC
Confidence            578999999999999999876 699999999999995 5666665 69999999999999987

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=99.87  E-value=2.3e-21  Score=213.21  Aligned_cols=295  Identities=19%  Similarity=0.198  Sum_probs=196.9

Q ss_pred             CcccEEEecCCCCCcc-CcccCCCCcccEEecCCCCchhc-chhhhhcccccEEeecccccccccccc-ccCcccccccc
Q 039689          197 PRLRVFSLRGYNIFEL-PKAIENLKHLRFLDLSTTKIEIL-RESINTLYNLHTLLLEDCRRLKKLCKD-MGNLTKLHHLN  273 (763)
Q Consensus       197 ~~Lr~L~L~~~~i~~l-p~~~~~l~~L~~L~L~~~~i~~l-p~~~~~L~~L~~L~L~~~~~l~~lp~~-i~~L~~L~~L~  273 (763)
                      +.+++|+|++|.++.+ |..|..+++|++|+|++|.++.+ |..|+++++|++|+|++ +.+..+|.. ++++++|++|+
T Consensus        32 ~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~-n~l~~~~~~~~~~l~~L~~L~  110 (477)
T 2id5_A           32 TETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRS-NRLKLIPLGVFTGLSNLTKLD  110 (477)
T ss_dssp             TTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCS-SCCCSCCTTSSTTCTTCCEEE
T ss_pred             CCCcEEECCCCccceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCC-CcCCccCcccccCCCCCCEEE
Confidence            5788899999888887 57788889999999998888877 67888889999999988 467777765 78888999998


Q ss_pred             cCCcccccccccCCCccCCCceeeecCcccccCcccchhhhhcCcccccceEEeeccCCCCCCccHHHHhhcCCCCCCce
Q 039689          274 NSNVGSLEEMLMLKSLVHLQGTLEISRLENVKGVGDASEVQLNSKVNLKALYLQWGVRDAVEPKTETQVIDMLKPHQKLE  353 (763)
Q Consensus       274 l~~~~~l~~l~~l~~L~~L~~~L~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~l~~l~~L~  353 (763)
                      +++|. +..++                           ...+..+++|+.|+++.|.....                   
T Consensus       111 Ls~n~-i~~~~---------------------------~~~~~~l~~L~~L~l~~n~l~~~-------------------  143 (477)
T 2id5_A          111 ISENK-IVILL---------------------------DYMFQDLYNLKSLEVGDNDLVYI-------------------  143 (477)
T ss_dssp             CTTSC-CCEEC---------------------------TTTTTTCTTCCEEEECCTTCCEE-------------------
T ss_pred             CCCCc-cccCC---------------------------hhHccccccCCEEECCCCcccee-------------------
Confidence            88886 33221                           22345566777777765522110                   


Q ss_pred             EEEeeeCCCCCCCccCCCCCCCceEEEEeccCCCCCCC--CCCCCCCCCcceecccCCceEeCccccCCCcCCCCCCcce
Q 039689          354 LTITGYGGTKFPIWLGDSLFSKLMLLKFDNCGTCTSLP--SVGQLPFLKDPVISGMGRVKIVGSEFYGSSCSVSFPSLET  431 (763)
Q Consensus       354 L~~~~~~~~~~p~~~~~~~~~~L~~L~l~~~~~~~~l~--~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~f~~L~~  431 (763)
                                .|..+..  +++|+.|++++|.. ..++  .+..+++|+.|+++++.........|      ..+++   
T Consensus       144 ----------~~~~~~~--l~~L~~L~l~~n~l-~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~------~~l~~---  201 (477)
T 2id5_A          144 ----------SHRAFSG--LNSLEQLTLEKCNL-TSIPTEALSHLHGLIVLRLRHLNINAIRDYSF------KRLYR---  201 (477)
T ss_dssp             ----------CTTSSTT--CTTCCEEEEESCCC-SSCCHHHHTTCTTCCEEEEESCCCCEECTTCS------CSCTT---
T ss_pred             ----------ChhhccC--CCCCCEEECCCCcC-cccChhHhcccCCCcEEeCCCCcCcEeChhhc------ccCcc---
Confidence                      1233443  78999999999954 4455  48889999999999876544332222      12444   


Q ss_pred             eeccccchhhhcCCCCcCCcccEEEEecCcchh---hcCCCCCcccEEEEecCCcccccCCCccccceeccccchhhhhh
Q 039689          432 LFFVDICSKLQGTLPERLLLLEKLNIFRCEQLL---VTLQCLPALRELEIDGCKGVVLSSPTDLSSLKLVHSRDMAKEVF  508 (763)
Q Consensus       432 L~l~~~~~~l~~~~~~~~~~L~~L~l~~~~~l~---~~l~~l~~L~~L~l~~~~~~~~~~~~~L~~L~~~~~~~~~~~~~  508 (763)
                                          |+.|++.+|....   .......+|++|++++|.....                  +...
T Consensus       202 --------------------L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~------------------~~~~  243 (477)
T 2id5_A          202 --------------------LKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAV------------------PYLA  243 (477)
T ss_dssp             --------------------CCEEEEECCTTCCEECTTTTTTCCCSEEEEESSCCCSC------------------CHHH
T ss_pred             --------------------cceeeCCCCccccccCcccccCccccEEECcCCccccc------------------CHHH
Confidence                                4444444443222   1222345899999999864431                  1223


Q ss_pred             cCCCCCCceEEEeccCCccccccccCcCCccccccCceeeccCCchhhhcceeeeccCCCcccccchhhhcCCCCcceEE
Q 039689          509 EQGLPKLERLEIQHVREQTYLWRSETRLPQDIRSLNRLQISRCPQLISLLRTVKIEDCNALESLPEAWMHNSNSSLESLK  588 (763)
Q Consensus       509 ~~~~~~L~~L~l~~~~~l~~l~~~~~~~p~~l~~L~~L~l~~~~~l~~~L~~L~l~~~~~l~~l~~~~~~~~l~~L~~L~  588 (763)
                      +..+++|++|++++|.......    .....+++|+               .|++++ +.++.+++..+. .+++|++|+
T Consensus       244 ~~~l~~L~~L~Ls~n~l~~~~~----~~~~~l~~L~---------------~L~L~~-n~l~~~~~~~~~-~l~~L~~L~  302 (477)
T 2id5_A          244 VRHLVYLRFLNLSYNPISTIEG----SMLHELLRLQ---------------EIQLVG-GQLAVVEPYAFR-GLNYLRVLN  302 (477)
T ss_dssp             HTTCTTCCEEECCSSCCCEECT----TSCTTCTTCC---------------EEECCS-SCCSEECTTTBT-TCTTCCEEE
T ss_pred             hcCccccCeeECCCCcCCccCh----hhccccccCC---------------EEECCC-CccceECHHHhc-CcccCCEEE
Confidence            4678999999999997543110    0112334444               455554 556666444233 489999999


Q ss_pred             EecCccccccCC--CCCCCCccEEEEccCCCCCCC
Q 039689          589 IRSCNSLVSFPD--FALPSQLRTVTIKGCDALESL  621 (763)
Q Consensus       589 l~~c~~l~~~~~--~~~~~~L~~L~l~~~~~l~~~  621 (763)
                      +++|. ++.++.  +..+++|++|++++|+..-.-
T Consensus       303 L~~N~-l~~~~~~~~~~l~~L~~L~l~~N~l~c~c  336 (477)
T 2id5_A          303 VSGNQ-LTTLEESVFHSVGNLETLILDSNPLACDC  336 (477)
T ss_dssp             CCSSC-CSCCCGGGBSCGGGCCEEECCSSCEECSG
T ss_pred             CCCCc-CceeCHhHcCCCcccCEEEccCCCccCcc
Confidence            98875 566664  567789999999999754443

>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*

Probab=99.87  E-value=2e-23  Score=231.68  Aligned_cols=163  Identities=11%  Similarity=0.151  Sum_probs=128.4

Q ss_pred             ChHHHHhhhhcCCCCCCCcchHHHHHHHHHHHcCCChHHHHHHHHHhcCCCChHHHHHHHhhhcccccCCccChHHHHHH
Q 039689            1 MHWECYQKMTVCVCSLNMHQSLKEVGQKIAMKCKGLPLAAKTLGGLLRGKDDPKDWENVLKTEVWDLADDKCDIIPALRV   80 (763)
Q Consensus         1 ~~~~lf~~~af~~~~~~~~~~~~~~~~~i~~~c~GlPlal~~~g~~L~~~~~~~~W~~~l~~~~~~~~~~~~~i~~~l~~   80 (763)
                      +||+||+++||+..   .++++.+++++|+++|+|+||||+++|+.|+.+ .. +|...+....+..  ...++.+++++
T Consensus       297 ea~~Lf~~~a~~~~---~~~~~~~~~~~I~~~c~GlPLAl~~~g~~l~~~-~w-~~~~~l~~~l~~~--~~~~i~~~l~~  369 (549)
T 2a5y_B          297 ECYDFLEAYGMPMP---VGEKEEDVLNKTIELSSGNPATLMMFFKSCEPK-TF-EKMAQLNNKLESR--GLVGVECITPY  369 (549)
T ss_dssp             HHHHHHHHTSCCCC-----CHHHHHHHHHHHHHTTCHHHHHHHHTTCCSS-SH-HHHHHHHHHHHHH--CSSTTCCCSSS
T ss_pred             HHHHHHHHHhcCCC---CchhHHHHHHHHHHHhCCChHHHHHHHHHhccc-hH-HHHHHhHHHhhcc--cHHHHHHHHhc
Confidence            58999999998653   257899999999999999999999999999876 32 2333343322221  23568889999


Q ss_pred             HHhcCCHhHHHHhh-----------hhcccCCCCccCHHHHHHHHHHc--CCcccCCCcccHHHHHHHHHHHHHHCCCcc
Q 039689           81 SYHFLPPQLKQCFA-----------YCSLFPKDHEFQKEQIILLWAAE--GFLHQENSKRKMEDLGREFVEELHSRSLFH  147 (763)
Q Consensus        81 Sy~~L~~~~k~~fl-----------~~~~fp~~~~i~~~~li~~w~~~--g~~~~~~~~~~~~~~~~~~~~~L~~~~ll~  147 (763)
                      ||++||+++|.||+           |||+||+|+.|+    ++.|+++  ||+........++++++ ++++|++|||++
T Consensus       370 Sy~~L~~~lk~~f~~Ls~~er~l~~~ls~fp~~~~i~----i~~w~a~~~G~i~~~~~~~~~~~~~~-~l~~L~~rsLl~  444 (549)
T 2a5y_B          370 SYKSLAMALQRCVEVLSDEDRSALAFAVVMPPGVDIP----VKLWSCVIPVDICSNEEEQLDDEVAD-RLKRLSKRGALL  444 (549)
T ss_dssp             SSSSHHHHHHHHHHTSCHHHHHHTTGGGSSCTTCCEE----HHHHHHHSCC-------CCCTHHHHH-HHHHTTTBSSCS
T ss_pred             ccccccHHHHHHHhccchhhhhHhhheeeeCCCCeee----eeeeeeeccceeccCCCCCCHHHHHH-HHHHHHHcCCee
Confidence            99999999999999           999999999998    8899999  99987654667788888 999999999999


Q ss_pred             cccC-CCCcceechhHHHHHHHHhcCceE
Q 039689          148 QSTY-DASRFVMHDLINDLTRWAAGETCF  175 (763)
Q Consensus       148 ~~~~-~~~~~~mhdli~~~~~~~~~~~~~  175 (763)
                      .... ...+|+|||+||++|++++..++.
T Consensus       445 ~~~~~~~~~~~mHdlv~~~a~~~~~~~~~  473 (549)
T 2a5y_B          445 SGKRMPVLTFKIDHIIHMFLKHVVDAQTI  473 (549)
T ss_dssp             EEECSSSCEEECCHHHHHHHHTTSCTHHH
T ss_pred             EecCCCceEEEeChHHHHHHHHHHHHHHH
Confidence            8643 346799999999999999987763

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.87  E-value=3.9e-21  Score=216.80  Aligned_cols=60  Identities=10%  Similarity=0.241  Sum_probs=52.4

Q ss_pred             CCCcccEEecCCCCchhcchh-hhhcccccEEeeccccccccccc-cccCcccccccccCCcc
Q 039689          218 NLKHLRFLDLSTTKIEILRES-INTLYNLHTLLLEDCRRLKKLCK-DMGNLTKLHHLNNSNVG  278 (763)
Q Consensus       218 ~l~~L~~L~L~~~~i~~lp~~-~~~L~~L~~L~L~~~~~l~~lp~-~i~~L~~L~~L~l~~~~  278 (763)
                      .+.++++|++++|.+..+|.. ++.+++|++|+|++| .+..+|+ .|+.+++|++|++++|.
T Consensus        49 ~l~~l~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~n~  110 (597)
T 3oja_B           49 TLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDL-QIEEIDTYAFAYAHTIQKLYMGFNA  110 (597)
T ss_dssp             GGCCCSEEEESSCEESEECTHHHHHCCCCSEEECTTS-CCCEECTTTTTTCTTCCEEECCSSC
T ss_pred             cCCCceEEEeeCCCCCCcCHHHHccCCCCcEEECCCC-CCCCCChHHhcCCCCCCEEECCCCc
Confidence            478999999999999999866 689999999999995 5666654 79999999999999987

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=99.83  E-value=2.6e-20  Score=193.06  Aligned_cols=227  Identities=24%  Similarity=0.316  Sum_probs=145.4

Q ss_pred             CCCcccEEEecCCCCCccCcccCCCCcccEEecCCCCchhcchhhhhcccccEEeeccccccccccccccCccccccccc
Q 039689          195 NLPRLRVFSLRGYNIFELPKAIENLKHLRFLDLSTTKIEILRESINTLYNLHTLLLEDCRRLKKLCKDMGNLTKLHHLNN  274 (763)
Q Consensus       195 ~l~~Lr~L~L~~~~i~~lp~~~~~l~~L~~L~L~~~~i~~lp~~~~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l  274 (763)
                      ...+++.|++++|.++.+|..++.+++|++|+|++|.++.+|..++++++|++|++++| .+..+|..++++++|++|++
T Consensus        79 ~~~~l~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~Ls~n-~l~~lp~~l~~l~~L~~L~L  157 (328)
T 4fcg_A           79 TQPGRVALELRSVPLPQFPDQAFRLSHLQHMTIDAAGLMELPDTMQQFAGLETLTLARN-PLRALPASIASLNRLRELSI  157 (328)
T ss_dssp             TSTTCCEEEEESSCCSSCCSCGGGGTTCSEEEEESSCCCCCCSCGGGGTTCSEEEEESC-CCCCCCGGGGGCTTCCEEEE
T ss_pred             cccceeEEEccCCCchhcChhhhhCCCCCEEECCCCCccchhHHHhccCCCCEEECCCC-ccccCcHHHhcCcCCCEEEC
Confidence            46789999999999999999999999999999999999999999999999999999994 67799999999999999999


Q ss_pred             CCcccccccccCCCccCCCceeeecCcccccCcccchhhhhcCcccccceEEeeccCCCCCCccHHHHhhcCCCCCCceE
Q 039689          275 SNVGSLEEMLMLKSLVHLQGTLEISRLENVKGVGDASEVQLNSKVNLKALYLQWGVRDAVEPKTETQVIDMLKPHQKLEL  354 (763)
Q Consensus       275 ~~~~~l~~l~~l~~L~~L~~~L~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~l~~l~~L~L  354 (763)
                      ++|..+..+|.-     +. ..             .....+.++++|+.|++++|..                       
T Consensus       158 ~~n~~~~~~p~~-----~~-~~-------------~~~~~~~~l~~L~~L~L~~n~l-----------------------  195 (328)
T 4fcg_A          158 RACPELTELPEP-----LA-ST-------------DASGEHQGLVNLQSLRLEWTGI-----------------------  195 (328)
T ss_dssp             EEETTCCCCCSC-----SE-EE-------------C-CCCEEESTTCCEEEEEEECC-----------------------
T ss_pred             CCCCCccccChh-----Hh-hc-------------cchhhhccCCCCCEEECcCCCc-----------------------
Confidence            998755555530     00 00             0011244566777777766533                       


Q ss_pred             EEeeeCCCCCCCccCCCCCCCceEEEEeccCCCCCCCCCCCCCCCCcceecccCCceEeCccccCCCcCCCCCCcceeec
Q 039689          355 TITGYGGTKFPIWLGDSLFSKLMLLKFDNCGTCTSLPSVGQLPFLKDPVISGMGRVKIVGSEFYGSSCSVSFPSLETLFF  434 (763)
Q Consensus       355 ~~~~~~~~~~p~~~~~~~~~~L~~L~l~~~~~~~~l~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~f~~L~~L~l  434 (763)
                             ..+|.++..  +++|+.|++++|......+.++.+++|++|++++|.....++..+.      .+++|++|++
T Consensus       196 -------~~lp~~l~~--l~~L~~L~L~~N~l~~l~~~l~~l~~L~~L~Ls~n~~~~~~p~~~~------~l~~L~~L~L  260 (328)
T 4fcg_A          196 -------RSLPASIAN--LQNLKSLKIRNSPLSALGPAIHHLPKLEELDLRGCTALRNYPPIFG------GRAPLKRLIL  260 (328)
T ss_dssp             -------CCCCGGGGG--CTTCCEEEEESSCCCCCCGGGGGCTTCCEEECTTCTTCCBCCCCTT------CCCCCCEEEC
T ss_pred             -------CcchHhhcC--CCCCCEEEccCCCCCcCchhhccCCCCCEEECcCCcchhhhHHHhc------CCCCCCEEEC
Confidence                   234444433  4555555555554332222444555555555555444443333222      2445555555


Q ss_pred             cccchhhhcCCCC---cCCcccEEEEecCc---chhhcCCCCCcccEEEEecC
Q 039689          435 VDICSKLQGTLPE---RLLLLEKLNIFRCE---QLLVTLQCLPALRELEIDGC  481 (763)
Q Consensus       435 ~~~~~~l~~~~~~---~~~~L~~L~l~~~~---~l~~~l~~l~~L~~L~l~~~  481 (763)
                      .+  +...+.+|.   .+++|++|++++|.   .++..+..+++|+.+++..+
T Consensus       261 ~~--n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~~L~~L~~l~l~~~  311 (328)
T 4fcg_A          261 KD--CSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPH  311 (328)
T ss_dssp             TT--CTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCGGGGGSCTTCEEECCGG
T ss_pred             CC--CCchhhcchhhhcCCCCCEEeCCCCCchhhccHHHhhccCceEEeCCHH
Confidence            44  122223332   34555556665554   23345566777777776654

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=99.82  E-value=2.5e-19  Score=186.52  Aligned_cols=83  Identities=30%  Similarity=0.446  Sum_probs=70.2

Q ss_pred             CcccEEEecCCCCCccCcccCCCCcccEEecCCCCchhcch-hhhhcccccEEeeccccccccc-cccccCccccccccc
Q 039689          197 PRLRVFSLRGYNIFELPKAIENLKHLRFLDLSTTKIEILRE-SINTLYNLHTLLLEDCRRLKKL-CKDMGNLTKLHHLNN  274 (763)
Q Consensus       197 ~~Lr~L~L~~~~i~~lp~~~~~l~~L~~L~L~~~~i~~lp~-~~~~L~~L~~L~L~~~~~l~~l-p~~i~~L~~L~~L~l  274 (763)
                      .++++++++++.++.+|..+.  ++|++|+|++|.++.+|. .|+++++|++|++++| .+..+ |..++++++|++|++
T Consensus        31 c~l~~l~~~~~~l~~lp~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L  107 (330)
T 1xku_A           31 CHLRVVQCSDLGLEKVPKDLP--PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINN-KISKISPGAFAPLVKLERLYL  107 (330)
T ss_dssp             EETTEEECTTSCCCSCCCSCC--TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSS-CCCCBCTTTTTTCTTCCEEEC
T ss_pred             CCCeEEEecCCCccccCccCC--CCCeEEECCCCcCCEeChhhhccCCCCCEEECCCC-cCCeeCHHHhcCCCCCCEEEC
Confidence            478999999999999987664  789999999999998865 7899999999999995 55555 778999999999999


Q ss_pred             CCccccccc
Q 039689          275 SNVGSLEEM  283 (763)
Q Consensus       275 ~~~~~l~~l  283 (763)
                      ++|. +..+
T Consensus       108 s~n~-l~~l  115 (330)
T 1xku_A          108 SKNQ-LKEL  115 (330)
T ss_dssp             CSSC-CSBC
T ss_pred             CCCc-CCcc
Confidence            9987 4443

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=99.82  E-value=3.8e-19  Score=185.29  Aligned_cols=84  Identities=30%  Similarity=0.392  Sum_probs=70.7

Q ss_pred             CcccEEEecCCCCCccCcccCCCCcccEEecCCCCchhcc-hhhhhcccccEEeeccccccccc-cccccCccccccccc
Q 039689          197 PRLRVFSLRGYNIFELPKAIENLKHLRFLDLSTTKIEILR-ESINTLYNLHTLLLEDCRRLKKL-CKDMGNLTKLHHLNN  274 (763)
Q Consensus       197 ~~Lr~L~L~~~~i~~lp~~~~~l~~L~~L~L~~~~i~~lp-~~~~~L~~L~~L~L~~~~~l~~l-p~~i~~L~~L~~L~l  274 (763)
                      .++++++++++.++.+|..+.  ++|++|++++|.++.+| ..|+++++|++|++++| .+..+ |..++++++|++|++
T Consensus        33 c~l~~l~~~~~~l~~ip~~~~--~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L  109 (332)
T 2ft3_A           33 CHLRVVQCSDLGLKAVPKEIS--PDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNN-KISKIHEKAFSPLRKLQKLYI  109 (332)
T ss_dssp             EETTEEECCSSCCSSCCSCCC--TTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS-CCCEECGGGSTTCTTCCEEEC
T ss_pred             ccCCEEECCCCCccccCCCCC--CCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCC-ccCccCHhHhhCcCCCCEEEC
Confidence            378999999999999998774  79999999999999884 57999999999999995 55555 777999999999999


Q ss_pred             CCcccccccc
Q 039689          275 SNVGSLEEML  284 (763)
Q Consensus       275 ~~~~~l~~l~  284 (763)
                      ++|. +..+|
T Consensus       110 ~~n~-l~~l~  118 (332)
T 2ft3_A          110 SKNH-LVEIP  118 (332)
T ss_dssp             CSSC-CCSCC
T ss_pred             CCCc-CCccC
Confidence            9987 44433

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=99.82  E-value=6.6e-19  Score=196.42  Aligned_cols=77  Identities=18%  Similarity=0.165  Sum_probs=66.6

Q ss_pred             CcccEEEecCCCCCccCcccCCCCcccEEecCCCCchhcchhhhhcccccEEeeccccccccccccccCcccccccccCC
Q 039689          197 PRLRVFSLRGYNIFELPKAIENLKHLRFLDLSTTKIEILRESINTLYNLHTLLLEDCRRLKKLCKDMGNLTKLHHLNNSN  276 (763)
Q Consensus       197 ~~Lr~L~L~~~~i~~lp~~~~~l~~L~~L~L~~~~i~~lp~~~~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l~~  276 (763)
                      .++++|++++|.++.+|..+.  ++|++|+|++|.++.+|.   .+++|++|+|++| .+..+|.   .+++|++|++++
T Consensus        40 ~~l~~L~ls~n~L~~lp~~l~--~~L~~L~L~~N~l~~lp~---~l~~L~~L~Ls~N-~l~~lp~---~l~~L~~L~Ls~  110 (622)
T 3g06_A           40 NGNAVLNVGESGLTTLPDCLP--AHITTLVIPDNNLTSLPA---LPPELRTLEVSGN-QLTSLPV---LPPGLLELSIFS  110 (622)
T ss_dssp             HCCCEEECCSSCCSCCCSCCC--TTCSEEEECSCCCSCCCC---CCTTCCEEEECSC-CCSCCCC---CCTTCCEEEECS
T ss_pred             CCCcEEEecCCCcCccChhhC--CCCcEEEecCCCCCCCCC---cCCCCCEEEcCCC-cCCcCCC---CCCCCCEEECcC
Confidence            358999999999999998776  899999999999999987   6899999999994 6888887   778999999998


Q ss_pred             ccccccc
Q 039689          277 VGSLEEM  283 (763)
Q Consensus       277 ~~~l~~l  283 (763)
                      |. +..+
T Consensus       111 N~-l~~l  116 (622)
T 3g06_A          111 NP-LTHL  116 (622)
T ss_dssp             CC-CCCC
T ss_pred             Cc-CCCC
Confidence            87 4433

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=99.80  E-value=6.2e-20  Score=190.23  Aligned_cols=197  Identities=20%  Similarity=0.296  Sum_probs=143.6

Q ss_pred             hhhccCCCCcccEEEecCCCCCccCcccCCCCcccEEecCCCCchhcchhhhhcccccEEeeccccccccccccccC---
Q 039689          189 VLQRLLNLPRLRVFSLRGYNIFELPKAIENLKHLRFLDLSTTKIEILRESINTLYNLHTLLLEDCRRLKKLCKDMGN---  265 (763)
Q Consensus       189 ~~~~~~~l~~Lr~L~L~~~~i~~lp~~~~~l~~L~~L~L~~~~i~~lp~~~~~L~~L~~L~L~~~~~l~~lp~~i~~---  265 (763)
                      ++..+..+++|++|++++|.++.+|..|+.+++|++|+|++|.++.+|..++++++|++|++++|+.+..+|..++.   
T Consensus        96 lp~~l~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L~~n~~~~~~p~~~~~~~~  175 (328)
T 4fcg_A           96 FPDQAFRLSHLQHMTIDAAGLMELPDTMQQFAGLETLTLARNPLRALPASIASLNRLRELSIRACPELTELPEPLASTDA  175 (328)
T ss_dssp             CCSCGGGGTTCSEEEEESSCCCCCCSCGGGGTTCSEEEEESCCCCCCCGGGGGCTTCCEEEEEEETTCCCCCSCSEEEC-
T ss_pred             cChhhhhCCCCCEEECCCCCccchhHHHhccCCCCEEECCCCccccCcHHHhcCcCCCEEECCCCCCccccChhHhhccc
Confidence            46667779999999999999999999999999999999999999999999999999999999999999999988765   


Q ss_pred             ------cccccccccCCcccccccccCCCccCCCceeeecCcccccCcccchhhhhcCcccccceEEeeccCCCCCCccH
Q 039689          266 ------LTKLHHLNNSNVGSLEEMLMLKSLVHLQGTLEISRLENVKGVGDASEVQLNSKVNLKALYLQWGVRDAVEPKTE  339 (763)
Q Consensus       266 ------L~~L~~L~l~~~~~l~~l~~l~~L~~L~~~L~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~  339 (763)
                            +++|++|++++|. +..+|.                            .+..+++|+.|++++|.         
T Consensus       176 ~~~~~~l~~L~~L~L~~n~-l~~lp~----------------------------~l~~l~~L~~L~L~~N~---------  217 (328)
T 4fcg_A          176 SGEHQGLVNLQSLRLEWTG-IRSLPA----------------------------SIANLQNLKSLKIRNSP---------  217 (328)
T ss_dssp             CCCEEESTTCCEEEEEEEC-CCCCCG----------------------------GGGGCTTCCEEEEESSC---------
T ss_pred             hhhhccCCCCCEEECcCCC-cCcchH----------------------------hhcCCCCCCEEEccCCC---------
Confidence                  9999999999987 544432                            23445566666665542         


Q ss_pred             HHHhhcCCCCCCceEEEeeeCCCCCCCccCCCCCCCceEEEEeccCCCCCCC-CCCCCCCCCcceecccCCceEeCcccc
Q 039689          340 TQVIDMLKPHQKLELTITGYGGTKFPIWLGDSLFSKLMLLKFDNCGTCTSLP-SVGQLPFLKDPVISGMGRVKIVGSEFY  418 (763)
Q Consensus       340 ~~~l~~l~~l~~L~L~~~~~~~~~~p~~~~~~~~~~L~~L~l~~~~~~~~l~-~l~~l~~L~~L~l~~~~~l~~~~~~~~  418 (763)
                                           ...+|..+..  +++|+.|++++|...+.+| .++.+++|+.|++++|.....++..+.
T Consensus       218 ---------------------l~~l~~~l~~--l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~  274 (328)
T 4fcg_A          218 ---------------------LSALGPAIHH--LPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIH  274 (328)
T ss_dssp             ---------------------CCCCCGGGGG--CTTCCEEECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGG
T ss_pred             ---------------------CCcCchhhcc--CCCCCEEECcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcchhhh
Confidence                                 2234444443  5667777777766666665 466677777777777666555544432


Q ss_pred             CCCcCCCCCCcceeeccccchhhhcCCCCcCCcccE
Q 039689          419 GSSCSVSFPSLETLFFVDICSKLQGTLPERLLLLEK  454 (763)
Q Consensus       419 ~~~~~~~f~~L~~L~l~~~~~~l~~~~~~~~~~L~~  454 (763)
                            .+++|++|++.+  +...+.+|..+.+|..
T Consensus       275 ------~l~~L~~L~L~~--n~~~~~iP~~l~~L~~  302 (328)
T 4fcg_A          275 ------RLTQLEKLDLRG--CVNLSRLPSLIAQLPA  302 (328)
T ss_dssp             ------GCTTCCEEECTT--CTTCCCCCGGGGGSCT
T ss_pred             ------cCCCCCEEeCCC--CCchhhccHHHhhccC
Confidence                  266777777766  3444566654443333

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=99.80  E-value=4e-20  Score=209.48  Aligned_cols=85  Identities=20%  Similarity=0.290  Sum_probs=59.2

Q ss_pred             CCCCcccEEEecCCCC----CccCcccC------------CCCcccEEecCCCCchh-cchhhhhc--ccccEEeecccc
Q 039689          194 LNLPRLRVFSLRGYNI----FELPKAIE------------NLKHLRFLDLSTTKIEI-LRESINTL--YNLHTLLLEDCR  254 (763)
Q Consensus       194 ~~l~~Lr~L~L~~~~i----~~lp~~~~------------~l~~L~~L~L~~~~i~~-lp~~~~~L--~~L~~L~L~~~~  254 (763)
                      .++++|+.|+++++..    ..+|..++            .+++|++|+|++|.++. .+..++.+  .+|++|++++|.
T Consensus        70 ~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~L~~L~L~~~~  149 (592)
T 3ogk_B           70 RRFPNLRSLKLKGKPRAAMFNLIPENWGGYVTPWVTEISNNLRQLKSVHFRRMIVSDLDLDRLAKARADDLETLKLDKCS  149 (592)
T ss_dssp             HHCTTCSEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCBCCHHHHHHHHHHHGGGCCEEEEESCE
T ss_pred             HhCCCCeEEEecCCcchhhcccccccccccchHHHHHHHhhCCCCCeEEeeccEecHHHHHHHHHhccccCcEEECcCCC
Confidence            5677899999988652    12333333            68899999999998774 35666664  459999999876


Q ss_pred             ccc--cccccccCcccccccccCCcc
Q 039689          255 RLK--KLCKDMGNLTKLHHLNNSNVG  278 (763)
Q Consensus       255 ~l~--~lp~~i~~L~~L~~L~l~~~~  278 (763)
                      .+.  .++..+.++++|++|++++|.
T Consensus       150 ~~~~~~l~~~~~~~~~L~~L~L~~~~  175 (592)
T 3ogk_B          150 GFTTDGLLSIVTHCRKIKTLLMEESS  175 (592)
T ss_dssp             EEEHHHHHHHHHHCTTCSEEECTTCE
T ss_pred             CcCHHHHHHHHhhCCCCCEEECcccc
Confidence            432  233334578899999999886

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=99.79  E-value=1.3e-19  Score=186.67  Aligned_cols=82  Identities=22%  Similarity=0.308  Sum_probs=74.2

Q ss_pred             CcccEEEecCCCCC---ccCcccCCCCcccEEecCC-CCch-hcchhhhhcccccEEeeccccccccccccccCcccccc
Q 039689          197 PRLRVFSLRGYNIF---ELPKAIENLKHLRFLDLST-TKIE-ILRESINTLYNLHTLLLEDCRRLKKLCKDMGNLTKLHH  271 (763)
Q Consensus       197 ~~Lr~L~L~~~~i~---~lp~~~~~l~~L~~L~L~~-~~i~-~lp~~~~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~  271 (763)
                      .+++.|++++|.+.   .+|..|+.+++|++|++++ |.+. .+|..|+++++|++|++++|.....+|..++++++|++
T Consensus        50 ~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~  129 (313)
T 1ogq_A           50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVT  129 (313)
T ss_dssp             CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCE
T ss_pred             ceEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCE
Confidence            68999999999988   4799999999999999995 8887 77999999999999999996555588999999999999


Q ss_pred             cccCCcc
Q 039689          272 LNNSNVG  278 (763)
Q Consensus       272 L~l~~~~  278 (763)
                      |++++|.
T Consensus       130 L~Ls~N~  136 (313)
T 1ogq_A          130 LDFSYNA  136 (313)
T ss_dssp             EECCSSE
T ss_pred             EeCCCCc
Confidence            9999987

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=99.77  E-value=2.5e-18  Score=180.80  Aligned_cols=79  Identities=20%  Similarity=0.309  Sum_probs=50.8

Q ss_pred             CcccEEEecCCCCCccCcccCCCCcccEEecCCCCchhcch-hhhhcccccEEeeccccccccc-cccccCccccccccc
Q 039689          197 PRLRVFSLRGYNIFELPKAIENLKHLRFLDLSTTKIEILRE-SINTLYNLHTLLLEDCRRLKKL-CKDMGNLTKLHHLNN  274 (763)
Q Consensus       197 ~~Lr~L~L~~~~i~~lp~~~~~l~~L~~L~L~~~~i~~lp~-~~~~L~~L~~L~L~~~~~l~~l-p~~i~~L~~L~~L~l  274 (763)
                      +...+.+.+++.++.+|..+.  ++|++|++++|.++.+|. .|+++++|++|++++| .+..+ |..++++++|++|++
T Consensus        31 ~~~~~c~~~~~~l~~iP~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L  107 (353)
T 2z80_A           31 DRNGICKGSSGSLNSIPSGLT--EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSN-GINTIEEDSFSSLGSLEHLDL  107 (353)
T ss_dssp             CTTSEEECCSTTCSSCCTTCC--TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTS-CCCEECTTTTTTCTTCCEEEC
T ss_pred             CCCeEeeCCCCCccccccccc--ccCcEEECCCCcCcccCHHHhccCCCCCEEECCCC-ccCccCHhhcCCCCCCCEEEC
Confidence            344456666677777766554  467777777777776654 5677777777777764 44444 344677777777777


Q ss_pred             CCcc
Q 039689          275 SNVG  278 (763)
Q Consensus       275 ~~~~  278 (763)
                      ++|.
T Consensus       108 s~n~  111 (353)
T 2z80_A          108 SYNY  111 (353)
T ss_dssp             CSSC
T ss_pred             CCCc
Confidence            7665

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=99.77  E-value=3e-18  Score=178.48  Aligned_cols=270  Identities=14%  Similarity=0.124  Sum_probs=160.3

Q ss_pred             CcccEEEecCCCCCcc-CcccCCCCcccEEecCCCCchhc-chhhhhcccccEEeeccccccccccccccCccccccccc
Q 039689          197 PRLRVFSLRGYNIFEL-PKAIENLKHLRFLDLSTTKIEIL-RESINTLYNLHTLLLEDCRRLKKLCKDMGNLTKLHHLNN  274 (763)
Q Consensus       197 ~~Lr~L~L~~~~i~~l-p~~~~~l~~L~~L~L~~~~i~~l-p~~~~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l  274 (763)
                      ++|++|++++|.++.+ |..|..+++|++|+|++|.++.+ |..|+++++|++|++++ +.+..+|..+.  ++|++|++
T Consensus        54 ~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~-n~l~~l~~~~~--~~L~~L~l  130 (332)
T 2ft3_A           54 PDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISK-NHLVEIPPNLP--SSLVELRI  130 (332)
T ss_dssp             TTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECCS-SCCCSCCSSCC--TTCCEEEC
T ss_pred             CCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECCC-CcCCccCcccc--ccCCEEEC
Confidence            6899999999999988 46899999999999999999987 78899999999999999 57889998776  89999999


Q ss_pred             CCccccccccc--CCCccCCCceeeecCcccccCcccchhhhhcCcccccceEEeeccCCCCCCccHHHHhhcCCCCCCc
Q 039689          275 SNVGSLEEMLM--LKSLVHLQGTLEISRLENVKGVGDASEVQLNSKVNLKALYLQWGVRDAVEPKTETQVIDMLKPHQKL  352 (763)
Q Consensus       275 ~~~~~l~~l~~--l~~L~~L~~~L~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~l~~l~~L  352 (763)
                      ++|. +..++.  +..+++|+ .+.+.+..-..  .......+..+ +|+.|+++                         
T Consensus       131 ~~n~-i~~~~~~~~~~l~~L~-~L~l~~n~l~~--~~~~~~~~~~l-~L~~L~l~-------------------------  180 (332)
T 2ft3_A          131 HDNR-IRKVPKGVFSGLRNMN-CIEMGGNPLEN--SGFEPGAFDGL-KLNYLRIS-------------------------  180 (332)
T ss_dssp             CSSC-CCCCCSGGGSSCSSCC-EEECCSCCCBG--GGSCTTSSCSC-CCSCCBCC-------------------------
T ss_pred             CCCc-cCccCHhHhCCCccCC-EEECCCCcccc--CCCCcccccCC-ccCEEECc-------------------------
Confidence            9997 665553  44555555 44443311100  00111222222 44444443                         


Q ss_pred             eEEEeeeCCCCCCCccCCCCCCCceEEEEeccCCCCCCC-CCCCCCCCCcceecccCCceEeCccccCCCcCCCCCCcce
Q 039689          353 ELTITGYGGTKFPIWLGDSLFSKLMLLKFDNCGTCTSLP-SVGQLPFLKDPVISGMGRVKIVGSEFYGSSCSVSFPSLET  431 (763)
Q Consensus       353 ~L~~~~~~~~~~p~~~~~~~~~~L~~L~l~~~~~~~~l~-~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~f~~L~~  431 (763)
                           ++....+|..+    +++|+.|++++|......+ .+..+++|+.|++++|.........+      ..+++|++
T Consensus       181 -----~n~l~~l~~~~----~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~------~~l~~L~~  245 (332)
T 2ft3_A          181 -----EAKLTGIPKDL----PETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSL------SFLPTLRE  245 (332)
T ss_dssp             -----SSBCSSCCSSS----CSSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCCTTGG------GGCTTCCE
T ss_pred             -----CCCCCccCccc----cCCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcCChhHh------hCCCCCCE
Confidence                 33344455443    3577777777775443332 56777777777777754332221111      12444555


Q ss_pred             eeccccchhhhcCCCCcCCcccEEEEecCc--chhhcCCCCCcccEEEEecCCcccccCCCccccceeccccchhhhhhc
Q 039689          432 LFFVDICSKLQGTLPERLLLLEKLNIFRCE--QLLVTLQCLPALRELEIDGCKGVVLSSPTDLSSLKLVHSRDMAKEVFE  509 (763)
Q Consensus       432 L~l~~~~~~l~~~~~~~~~~L~~L~l~~~~--~l~~~l~~l~~L~~L~l~~~~~~~~~~~~~L~~L~~~~~~~~~~~~~~  509 (763)
                      |++.                       +|.  .++..+..+++|++|++++|.......- .+...           ...
T Consensus       246 L~L~-----------------------~N~l~~lp~~l~~l~~L~~L~l~~N~l~~~~~~-~~~~~-----------~~~  290 (332)
T 2ft3_A          246 LHLD-----------------------NNKLSRVPAGLPDLKLLQVVYLHTNNITKVGVN-DFCPV-----------GFG  290 (332)
T ss_dssp             EECC-----------------------SSCCCBCCTTGGGCTTCCEEECCSSCCCBCCTT-SSSCS-----------SCC
T ss_pred             EECC-----------------------CCcCeecChhhhcCccCCEEECCCCCCCccChh-Hcccc-----------ccc
Confidence            5544                       442  2233455677788888887765442210 00000           000


Q ss_pred             CCCCCCceEEEeccCCccccccccCcCCccccccCceeeccC
Q 039689          510 QGLPKLERLEIQHVREQTYLWRSETRLPQDIRSLNRLQISRC  551 (763)
Q Consensus       510 ~~~~~L~~L~l~~~~~l~~l~~~~~~~p~~l~~L~~L~l~~~  551 (763)
                      ...+.|+.|++.+|+....- ... .....+++|+.++++++
T Consensus       291 ~~~~~l~~L~l~~N~~~~~~-~~~-~~~~~l~~L~~l~l~~n  330 (332)
T 2ft3_A          291 VKRAYYNGISLFNNPVPYWE-VQP-ATFRCVTDRLAIQFGNY  330 (332)
T ss_dssp             SSSCCBSEEECCSSSSCGGG-SCG-GGGTTBCCSTTEEC---
T ss_pred             cccccccceEeecCcccccc-cCc-ccccccchhhhhhcccc
Confidence            22566777777777643210 000 11134566777777654

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=99.77  E-value=3.7e-18  Score=177.66  Aligned_cols=268  Identities=15%  Similarity=0.125  Sum_probs=156.3

Q ss_pred             CcccEEEecCCCCCccC-cccCCCCcccEEecCCCCchhc-chhhhhcccccEEeeccccccccccccccCccccccccc
Q 039689          197 PRLRVFSLRGYNIFELP-KAIENLKHLRFLDLSTTKIEIL-RESINTLYNLHTLLLEDCRRLKKLCKDMGNLTKLHHLNN  274 (763)
Q Consensus       197 ~~Lr~L~L~~~~i~~lp-~~~~~l~~L~~L~L~~~~i~~l-p~~~~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l  274 (763)
                      +.+++|++++|.++.++ ..|+.+++|++|+|++|.++.+ |..|+++++|++|++++ +.+..+|..+.  ++|++|++
T Consensus        52 ~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~-n~l~~l~~~~~--~~L~~L~l  128 (330)
T 1xku_A           52 PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSK-NQLKELPEKMP--KTLQELRV  128 (330)
T ss_dssp             TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCS-SCCSBCCSSCC--TTCCEEEC
T ss_pred             CCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECCC-CcCCccChhhc--ccccEEEC
Confidence            68999999999999986 4799999999999999999988 88999999999999999 57889998765  79999999


Q ss_pred             CCccccccccc--CCCccCCCceeeecCcccccCcccchhhhhcCcccccceEEeeccCCCCCCccHHHHhhcCCCCCCc
Q 039689          275 SNVGSLEEMLM--LKSLVHLQGTLEISRLENVKGVGDASEVQLNSKVNLKALYLQWGVRDAVEPKTETQVIDMLKPHQKL  352 (763)
Q Consensus       275 ~~~~~l~~l~~--l~~L~~L~~~L~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~l~~l~~L  352 (763)
                      ++|. +..++.  +.++++|+ .+.+.+..-..  .......+.++++|+.|+++                         
T Consensus       129 ~~n~-l~~~~~~~~~~l~~L~-~L~l~~n~l~~--~~~~~~~~~~l~~L~~L~l~-------------------------  179 (330)
T 1xku_A          129 HENE-ITKVRKSVFNGLNQMI-VVELGTNPLKS--SGIENGAFQGMKKLSYIRIA-------------------------  179 (330)
T ss_dssp             CSSC-CCBBCHHHHTTCTTCC-EEECCSSCCCG--GGBCTTGGGGCTTCCEEECC-------------------------
T ss_pred             CCCc-ccccCHhHhcCCcccc-EEECCCCcCCc--cCcChhhccCCCCcCEEECC-------------------------
Confidence            9997 554443  34444444 44433211000  00111223333334433333                         


Q ss_pred             eEEEeeeCCCCCCCccCCCCCCCceEEEEeccCCCCCCC-CCCCCCCCCcceecccCCceEeCccccCCCcCCCCCCcce
Q 039689          353 ELTITGYGGTKFPIWLGDSLFSKLMLLKFDNCGTCTSLP-SVGQLPFLKDPVISGMGRVKIVGSEFYGSSCSVSFPSLET  431 (763)
Q Consensus       353 ~L~~~~~~~~~~p~~~~~~~~~~L~~L~l~~~~~~~~l~-~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~f~~L~~  431 (763)
                           ++....+|..+    +++|+.|++++|......+ .++.+++|+.|+++++.........+              
T Consensus       180 -----~n~l~~l~~~~----~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~--------------  236 (330)
T 1xku_A          180 -----DTNITTIPQGL----PPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSL--------------  236 (330)
T ss_dssp             -----SSCCCSCCSSC----CTTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTG--------------
T ss_pred             -----CCccccCCccc----cccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCceeChhhc--------------
Confidence                 33333444433    3566666666665333222 45566666666666654332222111              


Q ss_pred             eeccccchhhhcCCCCcCCcccEEEEecCc--chhhcCCCCCcccEEEEecCCcccccC--CCccccceeccccchhhhh
Q 039689          432 LFFVDICSKLQGTLPERLLLLEKLNIFRCE--QLLVTLQCLPALRELEIDGCKGVVLSS--PTDLSSLKLVHSRDMAKEV  507 (763)
Q Consensus       432 L~l~~~~~~l~~~~~~~~~~L~~L~l~~~~--~l~~~l~~l~~L~~L~l~~~~~~~~~~--~~~L~~L~~~~~~~~~~~~  507 (763)
                                     ..+++|++|++++|.  .++..+..+++|++|++++|.....+.  +...              .
T Consensus       237 ---------------~~l~~L~~L~L~~N~l~~lp~~l~~l~~L~~L~l~~N~i~~~~~~~f~~~--------------~  287 (330)
T 1xku_A          237 ---------------ANTPHLRELHLNNNKLVKVPGGLADHKYIQVVYLHNNNISAIGSNDFCPP--------------G  287 (330)
T ss_dssp             ---------------GGSTTCCEEECCSSCCSSCCTTTTTCSSCCEEECCSSCCCCCCTTSSSCS--------------S
T ss_pred             ---------------cCCCCCCEEECCCCcCccCChhhccCCCcCEEECCCCcCCccChhhcCCc--------------c
Confidence                           123445555555443  233345667788888888876544321  1000              0


Q ss_pred             hcCCCCCCceEEEeccCCccccccccCcCCccccccCceeecc
Q 039689          508 FEQGLPKLERLEIQHVREQTYLWRSETRLPQDIRSLNRLQISR  550 (763)
Q Consensus       508 ~~~~~~~L~~L~l~~~~~l~~l~~~~~~~p~~l~~L~~L~l~~  550 (763)
                      .....+.|+.+++++|+....- .....+ ..+.+++.+++++
T Consensus       288 ~~~~~~~l~~l~l~~N~~~~~~-i~~~~f-~~~~~l~~l~L~~  328 (330)
T 1xku_A          288 YNTKKASYSGVSLFSNPVQYWE-IQPSTF-RCVYVRAAVQLGN  328 (330)
T ss_dssp             CCTTSCCCSEEECCSSSSCGGG-SCGGGG-TTCCCGGGEEC--
T ss_pred             cccccccccceEeecCcccccc-cCcccc-ccccceeEEEecc
Confidence            0123466777777777653210 000011 3345666776655

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=99.76  E-value=4.5e-19  Score=182.66  Aligned_cols=110  Identities=21%  Similarity=0.307  Sum_probs=90.0

Q ss_pred             hhhhccCCCCcccEEEecC-CCCC-ccCcccCCCCcccEEecCCCCch-hcchhhhhcccccEEeecccccccccccccc
Q 039689          188 NVLQRLLNLPRLRVFSLRG-YNIF-ELPKAIENLKHLRFLDLSTTKIE-ILRESINTLYNLHTLLLEDCRRLKKLCKDMG  264 (763)
Q Consensus       188 ~~~~~~~~l~~Lr~L~L~~-~~i~-~lp~~~~~l~~L~~L~L~~~~i~-~lp~~~~~L~~L~~L~L~~~~~l~~lp~~i~  264 (763)
                      .++..+.++++|++|++++ |.+. .+|..|+.+++|++|+|++|.++ .+|..|+++++|++|++++|.....+|..++
T Consensus        67 ~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~  146 (313)
T 1ogq_A           67 PIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSIS  146 (313)
T ss_dssp             ECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEESCCCGGGG
T ss_pred             ccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCEEeCCCCccCCcCChHHh
Confidence            3567788999999999995 8766 57999999999999999999998 7899999999999999999654458899999


Q ss_pred             CcccccccccCCccccc-cccc-CCCcc-CCCceeeec
Q 039689          265 NLTKLHHLNNSNVGSLE-EMLM-LKSLV-HLQGTLEIS  299 (763)
Q Consensus       265 ~L~~L~~L~l~~~~~l~-~l~~-l~~L~-~L~~~L~~~  299 (763)
                      ++++|++|++++|. +. .+|. +..+. .|+ .+.+.
T Consensus       147 ~l~~L~~L~L~~N~-l~~~~p~~l~~l~~~L~-~L~L~  182 (313)
T 1ogq_A          147 SLPNLVGITFDGNR-ISGAIPDSYGSFSKLFT-SMTIS  182 (313)
T ss_dssp             GCTTCCEEECCSSC-CEEECCGGGGCCCTTCC-EEECC
T ss_pred             cCCCCCeEECcCCc-ccCcCCHHHhhhhhcCc-EEECc
Confidence            99999999999998 44 4442 44443 444 44443

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=99.75  E-value=9.4e-17  Score=179.07  Aligned_cols=252  Identities=29%  Similarity=0.320  Sum_probs=147.5

Q ss_pred             eEEEeeeCCCCCCCccCCCCCCCceEEEEeccCCCCCCCCCCCCCCCCcceecccCCceEeCccccCCCcCCCCCCccee
Q 039689          353 ELTITGYGGTKFPIWLGDSLFSKLMLLKFDNCGTCTSLPSVGQLPFLKDPVISGMGRVKIVGSEFYGSSCSVSFPSLETL  432 (763)
Q Consensus       353 ~L~~~~~~~~~~p~~~~~~~~~~L~~L~l~~~~~~~~l~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~f~~L~~L  432 (763)
                      .|++.++....+|..+    +++|+.|++++|. +..+|.  .+++|++|++++|...                      
T Consensus        44 ~L~ls~n~L~~lp~~l----~~~L~~L~L~~N~-l~~lp~--~l~~L~~L~Ls~N~l~----------------------   94 (622)
T 3g06_A           44 VLNVGESGLTTLPDCL----PAHITTLVIPDNN-LTSLPA--LPPELRTLEVSGNQLT----------------------   94 (622)
T ss_dssp             EEECCSSCCSCCCSCC----CTTCSEEEECSCC-CSCCCC--CCTTCCEEEECSCCCS----------------------
T ss_pred             EEEecCCCcCccChhh----CCCCcEEEecCCC-CCCCCC--cCCCCCEEEcCCCcCC----------------------
Confidence            4444455555666554    3577777777774 334554  4566666666664321                      


Q ss_pred             eccccchhhhcCCCCcCCcccEEEEecCcchhhcCCCCCcccEEEEecCCcccccCCCccccceeccccchhhhhhcCCC
Q 039689          433 FFVDICSKLQGTLPERLLLLEKLNIFRCEQLLVTLQCLPALRELEIDGCKGVVLSSPTDLSSLKLVHSRDMAKEVFEQGL  512 (763)
Q Consensus       433 ~l~~~~~~l~~~~~~~~~~L~~L~l~~~~~l~~~l~~l~~L~~L~l~~~~~~~~~~~~~L~~L~~~~~~~~~~~~~~~~~  512 (763)
                                 .+|..+++|++|++++|.... ....+++|++|++++|....++                      ..+
T Consensus        95 -----------~lp~~l~~L~~L~Ls~N~l~~-l~~~l~~L~~L~L~~N~l~~lp----------------------~~l  140 (622)
T 3g06_A           95 -----------SLPVLPPGLLELSIFSNPLTH-LPALPSGLCKLWIFGNQLTSLP----------------------VLP  140 (622)
T ss_dssp             -----------CCCCCCTTCCEEEECSCCCCC-CCCCCTTCCEEECCSSCCSCCC----------------------CCC
T ss_pred             -----------cCCCCCCCCCEEECcCCcCCC-CCCCCCCcCEEECCCCCCCcCC----------------------CCC
Confidence                       122234445555554443111 1114556666666666433211                      124


Q ss_pred             CCCceEEEeccCCccccccccCcCCccccccCceeeccCCchhhhcceeeeccCCCcccccchhhhcCCCCcceEEEecC
Q 039689          513 PKLERLEIQHVREQTYLWRSETRLPQDIRSLNRLQISRCPQLISLLRTVKIEDCNALESLPEAWMHNSNSSLESLKIRSC  592 (763)
Q Consensus       513 ~~L~~L~l~~~~~l~~l~~~~~~~p~~l~~L~~L~l~~~~~l~~~L~~L~l~~~~~l~~l~~~~~~~~l~~L~~L~l~~c  592 (763)
                      ++|++|++++|...        .+|..+++|+.|++++                +.++.+|..     +++|+.|++++|
T Consensus       141 ~~L~~L~Ls~N~l~--------~l~~~~~~L~~L~L~~----------------N~l~~l~~~-----~~~L~~L~Ls~N  191 (622)
T 3g06_A          141 PGLQELSVSDNQLA--------SLPALPSELCKLWAYN----------------NQLTSLPML-----PSGLQELSVSDN  191 (622)
T ss_dssp             TTCCEEECCSSCCS--------CCCCCCTTCCEEECCS----------------SCCSCCCCC-----CTTCCEEECCSS
T ss_pred             CCCCEEECcCCcCC--------CcCCccCCCCEEECCC----------------CCCCCCccc-----CCCCcEEECCCC
Confidence            66777777776432        3444445555555444                556666622     577777777665


Q ss_pred             ccccccCCCCCCCCccEEEEccCCCCCCCchhhhcCCCCCcceEeeccCCCccccccccCCCCCcEEEEecCCCCCCCcc
Q 039689          593 NSLVSFPDFALPSQLRTVTIKGCDALESLPEAWMQNSSTSLESLAIDSCDSLTYIARIQLPPSLKRLIIFRCDNLRFNSL  672 (763)
Q Consensus       593 ~~l~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~L~~L~l~~c~~l~~~~L  672 (763)
                      . ++.+|.  .+++|+.|++++| .++.+|.     .+++|+.|++++| .++.+|  ..                +++|
T Consensus       192 ~-l~~l~~--~~~~L~~L~L~~N-~l~~l~~-----~~~~L~~L~Ls~N-~L~~lp--~~----------------l~~L  243 (622)
T 3g06_A          192 Q-LASLPT--LPSELYKLWAYNN-RLTSLPA-----LPSGLKELIVSGN-RLTSLP--VL----------------PSEL  243 (622)
T ss_dssp             C-CSCCCC--CCTTCCEEECCSS-CCSSCCC-----CCTTCCEEECCSS-CCSCCC--CC----------------CTTC
T ss_pred             C-CCCCCC--ccchhhEEECcCC-cccccCC-----CCCCCCEEEccCC-ccCcCC--CC----------------CCcC
Confidence            4 455653  3467777887777 4555653     3467777888777 565554  11                2345


Q ss_pred             ceEEecCCCCCccccCCCCCCcCeEeeccCCCCccccCCCCCCCCcCceecccCC
Q 039689          673 RKLKISGGCPDLVSSPRFPASLTELKISDMPSLERLSSIGENLTSLKFLDLDNCP  727 (763)
Q Consensus       673 ~~L~l~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~ip~~~~~l~~L~~L~l~~c~  727 (763)
                      +.|++++  +.+..+|..+++|++|++++ +.++.+|..+..+++|+.|++++|+
T Consensus       244 ~~L~Ls~--N~L~~lp~~~~~L~~L~Ls~-N~L~~lp~~l~~l~~L~~L~L~~N~  295 (622)
T 3g06_A          244 KELMVSG--NRLTSLPMLPSGLLSLSVYR-NQLTRLPESLIHLSSETTVNLEGNP  295 (622)
T ss_dssp             CEEECCS--SCCSCCCCCCTTCCEEECCS-SCCCSCCGGGGGSCTTCEEECCSCC
T ss_pred             cEEECCC--CCCCcCCcccccCcEEeCCC-CCCCcCCHHHhhccccCEEEecCCC
Confidence            5555554  35556666667888888888 4677888777888888888888875

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=99.73  E-value=2.1e-17  Score=170.03  Aligned_cols=100  Identities=24%  Similarity=0.277  Sum_probs=82.9

Q ss_pred             CcccEEEecCCCCCccCc-ccCCCCcccEEecCCCCchhc---chhhhhcccccEEeeccccccccccccccCccccccc
Q 039689          197 PRLRVFSLRGYNIFELPK-AIENLKHLRFLDLSTTKIEIL---RESINTLYNLHTLLLEDCRRLKKLCKDMGNLTKLHHL  272 (763)
Q Consensus       197 ~~Lr~L~L~~~~i~~lp~-~~~~l~~L~~L~L~~~~i~~l---p~~~~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L  272 (763)
                      ++|++|++++|.++.+|. .|..+++|++|+|++|.++.+   |..+..+++|++|++++ +.+..+|..+..+++|++|
T Consensus        28 ~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~-n~i~~l~~~~~~l~~L~~L  106 (306)
T 2z66_A           28 SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSF-NGVITMSSNFLGLEQLEHL  106 (306)
T ss_dssp             TTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCS-CSEEEEEEEEETCTTCCEE
T ss_pred             CCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECCC-CccccChhhcCCCCCCCEE
Confidence            689999999999999975 479999999999999998865   78888999999999999 5788899889999999999


Q ss_pred             ccCCccccccccc---CCCccCCCceeeec
Q 039689          273 NNSNVGSLEEMLM---LKSLVHLQGTLEIS  299 (763)
Q Consensus       273 ~l~~~~~l~~l~~---l~~L~~L~~~L~~~  299 (763)
                      ++++|. +..++.   +..+++|+ .+.+.
T Consensus       107 ~l~~n~-l~~~~~~~~~~~l~~L~-~L~l~  134 (306)
T 2z66_A          107 DFQHSN-LKQMSEFSVFLSLRNLI-YLDIS  134 (306)
T ss_dssp             ECTTSE-EESSTTTTTTTTCTTCC-EEECT
T ss_pred             ECCCCc-ccccccchhhhhccCCC-EEECC
Confidence            999997 665543   44445554 44443

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=99.73  E-value=1.9e-18  Score=195.72  Aligned_cols=223  Identities=18%  Similarity=0.119  Sum_probs=124.4

Q ss_pred             CCCCcccEEEecCCCCCcc-CcccCC-C-CcccEEecCCCC-ch--hcchhhhhcccccEEeecccccccc----ccccc
Q 039689          194 LNLPRLRVFSLRGYNIFEL-PKAIEN-L-KHLRFLDLSTTK-IE--ILRESINTLYNLHTLLLEDCRRLKK----LCKDM  263 (763)
Q Consensus       194 ~~l~~Lr~L~L~~~~i~~l-p~~~~~-l-~~L~~L~L~~~~-i~--~lp~~~~~L~~L~~L~L~~~~~l~~----lp~~i  263 (763)
                      ..+++|++|+|++|.++.. +..+.. + .+|++|+|++|. ++  .++....++++|++|+|++|.....    ++..+
T Consensus       109 ~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~  188 (592)
T 3ogk_B          109 NNLRQLKSVHFRRMIVSDLDLDRLAKARADDLETLKLDKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELA  188 (592)
T ss_dssp             HHCTTCCEEEEESCBCCHHHHHHHHHHHGGGCCEEEEESCEEEEHHHHHHHHHHCTTCSEEECTTCEEECCCSHHHHHHH
T ss_pred             hhCCCCCeEEeeccEecHHHHHHHHHhccccCcEEECcCCCCcCHHHHHHHHhhCCCCCEEECccccccCcchhHHHHHH
Confidence            4789999999999987653 444554 3 459999999986 33  3455557899999999999753222    33345


Q ss_pred             cCcccccccccCCccccc-----cccc-CCCccCCCceeeecCcccccCcccchhhhhcCcccccceEEeeccCCCCCCc
Q 039689          264 GNLTKLHHLNNSNVGSLE-----EMLM-LKSLVHLQGTLEISRLENVKGVGDASEVQLNSKVNLKALYLQWGVRDAVEPK  337 (763)
Q Consensus       264 ~~L~~L~~L~l~~~~~l~-----~l~~-l~~L~~L~~~L~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~  337 (763)
                      ..+++|++|++++|. +.     .++. +.++++|+ .|.+.++..    .. ....+..+++|+.|++.......    
T Consensus       189 ~~~~~L~~L~L~~n~-~~~~~~~~l~~~~~~~~~L~-~L~L~~~~~----~~-l~~~~~~~~~L~~L~l~~~~~~~----  257 (592)
T 3ogk_B          189 QHNTSLEVLNFYMTE-FAKISPKDLETIARNCRSLV-SVKVGDFEI----LE-LVGFFKAAANLEEFCGGSLNEDI----  257 (592)
T ss_dssp             HHCCCCCEEECTTCC-CSSCCHHHHHHHHHHCTTCC-EEECSSCBG----GG-GHHHHHHCTTCCEEEECBCCCCT----
T ss_pred             hcCCCccEEEeeccC-CCccCHHHHHHHHhhCCCCc-EEeccCccH----HH-HHHHHhhhhHHHhhccccccccc----
Confidence            678899999999887 43     2221 23445555 555544211    11 22344555666666664211000    


Q ss_pred             cHHHHhhcCCCCCCceEEEeeeCCCCCCCccCCCCCCCceEEEEeccCCCCCCC-CCCCCCCCCcceecccCCceEeCc-
Q 039689          338 TETQVIDMLKPHQKLELTITGYGGTKFPIWLGDSLFSKLMLLKFDNCGTCTSLP-SVGQLPFLKDPVISGMGRVKIVGS-  415 (763)
Q Consensus       338 ~~~~~l~~l~~l~~L~L~~~~~~~~~~p~~~~~~~~~~L~~L~l~~~~~~~~l~-~l~~l~~L~~L~l~~~~~l~~~~~-  415 (763)
                                            .....+..+..  +++|+.|.++++. ...++ .+..+++|++|++++|. +..... 
T Consensus       258 ----------------------~~~~~~~~l~~--~~~L~~L~l~~~~-~~~l~~~~~~~~~L~~L~Ls~~~-l~~~~~~  311 (592)
T 3ogk_B          258 ----------------------GMPEKYMNLVF--PRKLCRLGLSYMG-PNEMPILFPFAAQIRKLDLLYAL-LETEDHC  311 (592)
T ss_dssp             ----------------------TCTTSSSCCCC--CTTCCEEEETTCC-TTTGGGGGGGGGGCCEEEETTCC-CCHHHHH
T ss_pred             ----------------------chHHHHHHhhc--cccccccCccccc-hhHHHHHHhhcCCCcEEecCCCc-CCHHHHH
Confidence                                  00111222222  5677777777652 23344 45567788888888765 211100 


Q ss_pred             cccCCCcCCCCCCcceeeccccchhhh--cCCCCcCCcccEEEEec
Q 039689          416 EFYGSSCSVSFPSLETLFFVDICSKLQ--GTLPERLLLLEKLNIFR  459 (763)
Q Consensus       416 ~~~~~~~~~~f~~L~~L~l~~~~~~l~--~~~~~~~~~L~~L~l~~  459 (763)
                      ..     ...+++|++|++.+. ....  ..+...+++|++|++.+
T Consensus       312 ~~-----~~~~~~L~~L~L~~~-~~~~~l~~~~~~~~~L~~L~L~~  351 (592)
T 3ogk_B          312 TL-----IQKCPNLEVLETRNV-IGDRGLEVLAQYCKQLKRLRIER  351 (592)
T ss_dssp             HH-----HTTCTTCCEEEEEGG-GHHHHHHHHHHHCTTCCEEEEEC
T ss_pred             HH-----HHhCcCCCEEeccCc-cCHHHHHHHHHhCCCCCEEEeec
Confidence            00     023666777766531 1110  01112456677777764

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=99.73  E-value=9.2e-19  Score=198.37  Aligned_cols=85  Identities=19%  Similarity=0.307  Sum_probs=62.1

Q ss_pred             CCCCcccEEEecCCC-CCcc---Cc------------ccCCCCcccEEecCCCCchhc-chhhh-hcccccEEeeccccc
Q 039689          194 LNLPRLRVFSLRGYN-IFEL---PK------------AIENLKHLRFLDLSTTKIEIL-RESIN-TLYNLHTLLLEDCRR  255 (763)
Q Consensus       194 ~~l~~Lr~L~L~~~~-i~~l---p~------------~~~~l~~L~~L~L~~~~i~~l-p~~~~-~L~~L~~L~L~~~~~  255 (763)
                      .++++|+.|+++++. +..+   |.            .+..+++|++|+|++|.++.. +..+. .+++|++|++++|..
T Consensus        63 ~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~  142 (594)
T 2p1m_B           63 RRFPKVRSVELKGKPHFADFNLVPDGWGGYVYPWIEAMSSSYTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEG  142 (594)
T ss_dssp             HHCTTCCEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESCEE
T ss_pred             hhCCCceEEeccCCCchhhcccccccccchhhHHHHHHHHhCCCCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCcCC
Confidence            556788999999876 2222   21            124678899999999887743 55564 789999999998866


Q ss_pred             ccc--ccccccCcccccccccCCcc
Q 039689          256 LKK--LCKDMGNLTKLHHLNNSNVG  278 (763)
Q Consensus       256 l~~--lp~~i~~L~~L~~L~l~~~~  278 (763)
                      +..  ++..+.++++|++|++++|.
T Consensus       143 ~~~~~l~~~~~~~~~L~~L~L~~~~  167 (594)
T 2p1m_B          143 FSTDGLAAIAATCRNLKELDLRESD  167 (594)
T ss_dssp             EEHHHHHHHHHHCTTCCEEECTTCE
T ss_pred             CCHHHHHHHHHhCCCCCEEeCcCCc
Confidence            655  55545688999999999886

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=99.73  E-value=7.8e-20  Score=200.23  Aligned_cols=81  Identities=12%  Similarity=0.146  Sum_probs=59.9

Q ss_pred             CcccEEEecCCCCCccC--cccCCCCcccEEecCCCCch-----hcchhhhhcccccEEeecccccccc-ccccc-cCcc
Q 039689          197 PRLRVFSLRGYNIFELP--KAIENLKHLRFLDLSTTKIE-----ILRESINTLYNLHTLLLEDCRRLKK-LCKDM-GNLT  267 (763)
Q Consensus       197 ~~Lr~L~L~~~~i~~lp--~~~~~l~~L~~L~L~~~~i~-----~lp~~~~~L~~L~~L~L~~~~~l~~-lp~~i-~~L~  267 (763)
                      +.|++|++++|.++..+  ..+..+++|++|+|++|.++     .+|..+..+++|++|++++|. +.. .+..+ ..+.
T Consensus         3 ~~l~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~-l~~~~~~~l~~~l~   81 (461)
T 1z7x_W            3 LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNE-LGDVGVHCVLQGLQ   81 (461)
T ss_dssp             EEEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCC-CHHHHHHHHHHTTC
T ss_pred             ccceehhhhhcccCchhHHHHHhhcCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCc-CChHHHHHHHHHHh
Confidence            57888999988887653  33778889999999998877     457778888999999998854 433 23332 2344


Q ss_pred             ----cccccccCCcc
Q 039689          268 ----KLHHLNNSNVG  278 (763)
Q Consensus       268 ----~L~~L~l~~~~  278 (763)
                          +|++|++++|.
T Consensus        82 ~~~~~L~~L~L~~n~   96 (461)
T 1z7x_W           82 TPSCKIQKLSLQNCC   96 (461)
T ss_dssp             STTCCCCEEECTTSC
T ss_pred             hCCCceeEEEccCCC
Confidence                68888888886

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=99.72  E-value=1.1e-16  Score=174.25  Aligned_cols=77  Identities=18%  Similarity=0.314  Sum_probs=48.5

Q ss_pred             ccEEEecCCCCCccCcccCCCCcccEEecCCCCchhc-chhhhhcccccEEeecccccccccc-ccccCcccccccccCC
Q 039689          199 LRVFSLRGYNIFELPKAIENLKHLRFLDLSTTKIEIL-RESINTLYNLHTLLLEDCRRLKKLC-KDMGNLTKLHHLNNSN  276 (763)
Q Consensus       199 Lr~L~L~~~~i~~lp~~~~~l~~L~~L~L~~~~i~~l-p~~~~~L~~L~~L~L~~~~~l~~lp-~~i~~L~~L~~L~l~~  276 (763)
                      .+.++.++..++.+|..+.  ++|++|+|++|.++.+ |..|+++++|++|+|++| .+..++ ..|.++++|++|++++
T Consensus        56 ~~~v~c~~~~l~~iP~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n-~i~~~~~~~~~~l~~L~~L~L~~  132 (452)
T 3zyi_A           56 FSKVVCTRRGLSEVPQGIP--SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRN-SIRQIEVGAFNGLASLNTLELFD  132 (452)
T ss_dssp             SCEEECCSSCCSSCCSCCC--TTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSS-CCCEECTTTTTTCTTCCEEECCS
T ss_pred             CcEEEECCCCcCccCCCCC--CCccEEECcCCcCceECHHHcCCCCCCCEEECCCC-ccCCcChhhccCcccCCEEECCC
Confidence            3456666666666665543  5667777777776655 455667777777777763 444443 4466677777777766


Q ss_pred             cc
Q 039689          277 VG  278 (763)
Q Consensus       277 ~~  278 (763)
                      |.
T Consensus       133 n~  134 (452)
T 3zyi_A          133 NW  134 (452)
T ss_dssp             SC
T ss_pred             Cc
Confidence            65

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=99.72  E-value=1.5e-17  Score=174.84  Aligned_cols=95  Identities=21%  Similarity=0.259  Sum_probs=80.7

Q ss_pred             CcccEEEecCCCCCccCc-ccCCCCcccEEecCCCCchhc-chhhhhcccccEEeecccccccccccc-ccCcccccccc
Q 039689          197 PRLRVFSLRGYNIFELPK-AIENLKHLRFLDLSTTKIEIL-RESINTLYNLHTLLLEDCRRLKKLCKD-MGNLTKLHHLN  273 (763)
Q Consensus       197 ~~Lr~L~L~~~~i~~lp~-~~~~l~~L~~L~L~~~~i~~l-p~~~~~L~~L~~L~L~~~~~l~~lp~~-i~~L~~L~~L~  273 (763)
                      ++|++|++++|.++.+|. .|..+++|++|++++|.++.+ |..|+++++|++|++++ +.+..+|.. ++++++|++|+
T Consensus        52 ~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~-n~l~~~~~~~~~~l~~L~~L~  130 (353)
T 2z80_A           52 EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSY-NYLSNLSSSWFKPLSSLTFLN  130 (353)
T ss_dssp             TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCS-SCCSSCCHHHHTTCTTCSEEE
T ss_pred             ccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCC-CcCCcCCHhHhCCCccCCEEE
Confidence            589999999999999864 899999999999999999988 56799999999999999 578888876 89999999999


Q ss_pred             cCCccccccccc---CCCccCCC
Q 039689          274 NSNVGSLEEMLM---LKSLVHLQ  293 (763)
Q Consensus       274 l~~~~~l~~l~~---l~~L~~L~  293 (763)
                      +++|. +..++.   +..+++|+
T Consensus       131 L~~n~-l~~l~~~~~~~~l~~L~  152 (353)
T 2z80_A          131 LLGNP-YKTLGETSLFSHLTKLQ  152 (353)
T ss_dssp             CTTCC-CSSSCSSCSCTTCTTCC
T ss_pred             CCCCC-CcccCchhhhccCCCCc
Confidence            99997 665554   34444444

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=99.72  E-value=1.3e-16  Score=173.07  Aligned_cols=76  Identities=22%  Similarity=0.339  Sum_probs=44.1

Q ss_pred             cEEEecCCCCCccCcccCCCCcccEEecCCCCchhcc-hhhhhcccccEEeecccccccccc-ccccCcccccccccCCc
Q 039689          200 RVFSLRGYNIFELPKAIENLKHLRFLDLSTTKIEILR-ESINTLYNLHTLLLEDCRRLKKLC-KDMGNLTKLHHLNNSNV  277 (763)
Q Consensus       200 r~L~L~~~~i~~lp~~~~~l~~L~~L~L~~~~i~~lp-~~~~~L~~L~~L~L~~~~~l~~lp-~~i~~L~~L~~L~l~~~  277 (763)
                      +.++.++..++.+|..+.  .++++|+|++|.++.++ ..|+++++|++|+|++| .+..++ ..|.++++|++|++++|
T Consensus        46 ~~v~c~~~~l~~iP~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n-~i~~i~~~~~~~l~~L~~L~L~~n  122 (440)
T 3zyj_A           46 SKVICVRKNLREVPDGIS--TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRN-HIRTIEIGAFNGLANLNTLELFDN  122 (440)
T ss_dssp             CEEECCSCCCSSCCSCCC--TTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSS-CCCEECGGGGTTCSSCCEEECCSS
T ss_pred             CEEEeCCCCcCcCCCCCC--CCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCC-cCCccChhhccCCccCCEEECCCC
Confidence            455555556666665443  55666666666666553 45666666666666663 344443 34666666666666665


Q ss_pred             c
Q 039689          278 G  278 (763)
Q Consensus       278 ~  278 (763)
                      .
T Consensus       123 ~  123 (440)
T 3zyj_A          123 R  123 (440)
T ss_dssp             C
T ss_pred             c
Confidence            4

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=99.71  E-value=5.6e-17  Score=176.53  Aligned_cols=217  Identities=24%  Similarity=0.276  Sum_probs=140.0

Q ss_pred             CcccEEEecCCCCCcc-CcccCCCCcccEEecCCCCchhcc-hhhhhcccccEEeecccccccccccc-ccCcccccccc
Q 039689          197 PRLRVFSLRGYNIFEL-PKAIENLKHLRFLDLSTTKIEILR-ESINTLYNLHTLLLEDCRRLKKLCKD-MGNLTKLHHLN  273 (763)
Q Consensus       197 ~~Lr~L~L~~~~i~~l-p~~~~~l~~L~~L~L~~~~i~~lp-~~~~~L~~L~~L~L~~~~~l~~lp~~-i~~L~~L~~L~  273 (763)
                      +++++|+|++|.++.+ |..|..+++|++|+|++|.++.++ ..|+++++|++|+|++ +.+..+|.. ++.+++|++|+
T Consensus        75 ~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~-n~l~~~~~~~~~~l~~L~~L~  153 (452)
T 3zyi_A           75 SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFD-NWLTVIPSGAFEYLSKLRELW  153 (452)
T ss_dssp             TTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS-SCCSBCCTTTSSSCTTCCEEE
T ss_pred             CCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCC-CcCCccChhhhcccCCCCEEE
Confidence            6899999999999988 688999999999999999999875 7899999999999999 567788766 89999999999


Q ss_pred             cCCccccccccc--CCCccCCCceeeecCcccccCcccchhhhhcCcccccceEEeeccCCCCCCccHHHHhhcCCCCCC
Q 039689          274 NSNVGSLEEMLM--LKSLVHLQGTLEISRLENVKGVGDASEVQLNSKVNLKALYLQWGVRDAVEPKTETQVIDMLKPHQK  351 (763)
Q Consensus       274 l~~~~~l~~l~~--l~~L~~L~~~L~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~l~~l~~  351 (763)
                      +++|. +..++.  +.++++|+ .|.+.+.....   ......+.+                                  
T Consensus       154 L~~N~-l~~~~~~~~~~l~~L~-~L~l~~~~~l~---~i~~~~~~~----------------------------------  194 (452)
T 3zyi_A          154 LRNNP-IESIPSYAFNRVPSLM-RLDLGELKKLE---YISEGAFEG----------------------------------  194 (452)
T ss_dssp             CCSCC-CCEECTTTTTTCTTCC-EEECCCCTTCC---EECTTTTTT----------------------------------
T ss_pred             CCCCC-cceeCHhHHhcCCccc-EEeCCCCCCcc---ccChhhccC----------------------------------
Confidence            99998 666554  44555555 44443322211   111112223                                  


Q ss_pred             ceEEEeeeCCCCCCCccCCCCCCCceEEEEeccCCCCCCCCCCCCCCCCcceecccCCceEeCccccCCCcCCCCCCcce
Q 039689          352 LELTITGYGGTKFPIWLGDSLFSKLMLLKFDNCGTCTSLPSVGQLPFLKDPVISGMGRVKIVGSEFYGSSCSVSFPSLET  431 (763)
Q Consensus       352 L~L~~~~~~~~~~p~~~~~~~~~~L~~L~l~~~~~~~~l~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~f~~L~~  431 (763)
                                           +++|+.|++++|. +..+|.+..+++|+.|++++|.........|.      .+++|+.
T Consensus       195 ---------------------l~~L~~L~L~~n~-l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~------~l~~L~~  246 (452)
T 3zyi_A          195 ---------------------LFNLKYLNLGMCN-IKDMPNLTPLVGLEELEMSGNHFPEIRPGSFH------GLSSLKK  246 (452)
T ss_dssp             ---------------------CTTCCEEECTTSC-CSSCCCCTTCTTCCEEECTTSCCSEECGGGGT------TCTTCCE
T ss_pred             ---------------------CCCCCEEECCCCc-ccccccccccccccEEECcCCcCcccCccccc------CccCCCE
Confidence                                 4455555555553 23344555555555555555444333332222      2455555


Q ss_pred             eeccccchhhhcCCC---CcCCcccEEEEecCcch---hhcCCCCCcccEEEEecCCc
Q 039689          432 LFFVDICSKLQGTLP---ERLLLLEKLNIFRCEQL---LVTLQCLPALRELEIDGCKG  483 (763)
Q Consensus       432 L~l~~~~~~l~~~~~---~~~~~L~~L~l~~~~~l---~~~l~~l~~L~~L~l~~~~~  483 (763)
                      |++.+  +.+.+..+   ..+++|+.|++++|.-.   ...+..+++|++|++++|+.
T Consensus       247 L~L~~--n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~  302 (452)
T 3zyi_A          247 LWVMN--SQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHNPW  302 (452)
T ss_dssp             EECTT--SCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTSSTTCTTCCEEECCSSCE
T ss_pred             EEeCC--CcCceECHHHhcCCCCCCEEECCCCcCCccChHHhccccCCCEEEccCCCc
Confidence            55554  22222212   24556666666666421   12466788999999998863

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=99.71  E-value=9.4e-17  Score=174.07  Aligned_cols=101  Identities=28%  Similarity=0.397  Sum_probs=84.4

Q ss_pred             CcccEEEecCCCCCccC-cccCCCCcccEEecCCCCchhcc-hhhhhcccccEEeeccccccccccc-cccCcccccccc
Q 039689          197 PRLRVFSLRGYNIFELP-KAIENLKHLRFLDLSTTKIEILR-ESINTLYNLHTLLLEDCRRLKKLCK-DMGNLTKLHHLN  273 (763)
Q Consensus       197 ~~Lr~L~L~~~~i~~lp-~~~~~l~~L~~L~L~~~~i~~lp-~~~~~L~~L~~L~L~~~~~l~~lp~-~i~~L~~L~~L~  273 (763)
                      +++++|+|++|.++.++ ..|..+++|++|+|++|.++.++ ..|.++++|++|+|++ +.+..+|. .+..+++|++|+
T Consensus        64 ~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~-n~l~~~~~~~~~~l~~L~~L~  142 (440)
T 3zyj_A           64 TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFD-NRLTTIPNGAFVYLSKLKELW  142 (440)
T ss_dssp             TTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCS-SCCSSCCTTTSCSCSSCCEEE
T ss_pred             CCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCC-CcCCeeCHhHhhccccCceee
Confidence            68999999999999885 88999999999999999999885 7899999999999999 57888876 499999999999


Q ss_pred             cCCccccccccc--CCCccCCCceeeecC
Q 039689          274 NSNVGSLEEMLM--LKSLVHLQGTLEISR  300 (763)
Q Consensus       274 l~~~~~l~~l~~--l~~L~~L~~~L~~~~  300 (763)
                      +++|. +..++.  +..+++|+ .|.+.+
T Consensus       143 L~~N~-i~~~~~~~~~~l~~L~-~L~l~~  169 (440)
T 3zyj_A          143 LRNNP-IESIPSYAFNRIPSLR-RLDLGE  169 (440)
T ss_dssp             CCSCC-CCEECTTTTTTCTTCC-EEECCC
T ss_pred             CCCCc-ccccCHHHhhhCcccC-EeCCCC
Confidence            99998 666554  44555555 444443

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=99.70  E-value=4.9e-19  Score=193.86  Aligned_cols=87  Identities=22%  Similarity=0.303  Sum_probs=71.4

Q ss_pred             cCCCCcccEEEecCCCCC-----ccCcccCCCCcccEEecCCCCchhc-chhh-hhcc----cccEEeeccccccc----
Q 039689          193 LLNLPRLRVFSLRGYNIF-----ELPKAIENLKHLRFLDLSTTKIEIL-RESI-NTLY----NLHTLLLEDCRRLK----  257 (763)
Q Consensus       193 ~~~l~~Lr~L~L~~~~i~-----~lp~~~~~l~~L~~L~L~~~~i~~l-p~~~-~~L~----~L~~L~L~~~~~l~----  257 (763)
                      +..+++|++|++++|.++     .++..+..+++|++|+|++|.++.. +..+ ..+.    +|++|++++|. +.    
T Consensus        24 ~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~L~~n~-i~~~~~  102 (461)
T 1z7x_W           24 LPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCC-LTGAGC  102 (461)
T ss_dssp             HHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCSTTCCCCEEECTTSC-CBGGGH
T ss_pred             HhhcCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHHHHhhCCCceeEEEccCCC-CCHHHH
Confidence            467789999999999987     4577788899999999999998853 4444 4566    79999999964 44    


Q ss_pred             -cccccccCcccccccccCCccccc
Q 039689          258 -KLCKDMGNLTKLHHLNNSNVGSLE  281 (763)
Q Consensus       258 -~lp~~i~~L~~L~~L~l~~~~~l~  281 (763)
                       .+|..+..+++|++|++++|. +.
T Consensus       103 ~~l~~~l~~~~~L~~L~Ls~n~-i~  126 (461)
T 1z7x_W          103 GVLSSTLRTLPTLQELHLSDNL-LG  126 (461)
T ss_dssp             HHHHHHTTSCTTCCEEECCSSB-CH
T ss_pred             HHHHHHHccCCceeEEECCCCc-Cc
Confidence             568889999999999999997 54

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=99.70  E-value=6.3e-18  Score=174.59  Aligned_cols=76  Identities=16%  Similarity=0.272  Sum_probs=53.6

Q ss_pred             CCcccccchhhhcCCCCcceEEEecCccccccCC-CCCCCCccEEEEccCCCC-CCCchhhhcCCCCCcceEeeccCCCc
Q 039689          567 NALESLPEAWMHNSNSSLESLKIRSCNSLVSFPD-FALPSQLRTVTIKGCDAL-ESLPEAWMQNSSTSLESLAIDSCDSL  644 (763)
Q Consensus       567 ~~l~~l~~~~~~~~l~~L~~L~l~~c~~l~~~~~-~~~~~~L~~L~l~~~~~l-~~~~~~~~~~~l~~L~~L~l~~c~~l  644 (763)
                      +.++.+|..+.  .+++|++|++++|. ++.+|. +..+++|+.|++++|+.. ..++..+  ..+++|+.+++.++..+
T Consensus       201 N~l~~l~~~~~--~l~~L~~L~L~~N~-l~~l~~~~~~l~~L~~L~l~~N~~~~~~~~~~~--~~~~~L~~l~l~~~~~l  275 (317)
T 3o53_A          201 NKLAFMGPEFQ--SAAGVTWISLRNNK-LVLIEKALRFSQNLEHFDLRGNGFHCGTLRDFF--SKNQRVQTVAKQTVKKL  275 (317)
T ss_dssp             SCCCEECGGGG--GGTTCSEEECTTSC-CCEECTTCCCCTTCCEEECTTCCCBHHHHHHHH--HTCHHHHHHHHHHHHHH
T ss_pred             CcCCcchhhhc--ccCcccEEECcCCc-ccchhhHhhcCCCCCEEEccCCCccCcCHHHHH--hccccceEEECCCchhc
Confidence            45556665532  27888999998764 556665 567789999999998665 3455555  67888999988877655


Q ss_pred             ccc
Q 039689          645 TYI  647 (763)
Q Consensus       645 ~~l  647 (763)
                      +..
T Consensus       276 ~~~  278 (317)
T 3o53_A          276 TGQ  278 (317)
T ss_dssp             HSS
T ss_pred             cCC
Confidence            543

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=99.69  E-value=1e-16  Score=162.96  Aligned_cols=76  Identities=20%  Similarity=0.183  Sum_probs=55.0

Q ss_pred             cEEEecCCCCCccCcccCCCCcccEEecCCCCchhcc-hhhhhcccccEEeeccccccccc-cccccCcccccccccCCc
Q 039689          200 RVFSLRGYNIFELPKAIENLKHLRFLDLSTTKIEILR-ESINTLYNLHTLLLEDCRRLKKL-CKDMGNLTKLHHLNNSNV  277 (763)
Q Consensus       200 r~L~L~~~~i~~lp~~~~~l~~L~~L~L~~~~i~~lp-~~~~~L~~L~~L~L~~~~~l~~l-p~~i~~L~~L~~L~l~~~  277 (763)
                      ++++.+++.++.+|..+  .++|++|++++|.++.+| ..|+.+++|++|++++| .+..+ |..++.+++|++|++++|
T Consensus        14 ~~~~c~~~~l~~ip~~~--~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n   90 (285)
T 1ozn_A           14 VTTSCPQQGLQAVPVGI--PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSN-VLARIDAAAFTGLALLEQLDLSDN   90 (285)
T ss_dssp             CEEECCSSCCSSCCTTC--CTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSS-CCCEECTTTTTTCTTCCEEECCSC
T ss_pred             eEEEcCcCCcccCCcCC--CCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCC-ccceeCHhhcCCccCCCEEeCCCC
Confidence            56777777777777644  467888888888887775 45777888888888874 45555 556777788888887777


Q ss_pred             c
Q 039689          278 G  278 (763)
Q Consensus       278 ~  278 (763)
                      .
T Consensus        91 ~   91 (285)
T 1ozn_A           91 A   91 (285)
T ss_dssp             T
T ss_pred             C
Confidence            4

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=99.68  E-value=2.2e-16  Score=160.42  Aligned_cols=83  Identities=22%  Similarity=0.290  Sum_probs=75.2

Q ss_pred             CCcccEEEecCCCCCccC-cccCCCCcccEEecCCCCchhc-chhhhhcccccEEeeccccccccc-cccccCccccccc
Q 039689          196 LPRLRVFSLRGYNIFELP-KAIENLKHLRFLDLSTTKIEIL-RESINTLYNLHTLLLEDCRRLKKL-CKDMGNLTKLHHL  272 (763)
Q Consensus       196 l~~Lr~L~L~~~~i~~lp-~~~~~l~~L~~L~L~~~~i~~l-p~~~~~L~~L~~L~L~~~~~l~~l-p~~i~~L~~L~~L  272 (763)
                      .++|++|++++|.++.++ ..|..+++|++|++++|.++.+ |..|+.+++|++|++++|..+..+ |..++.+++|++|
T Consensus        31 ~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~L  110 (285)
T 1ozn_A           31 PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTL  110 (285)
T ss_dssp             CTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEE
T ss_pred             CCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCCccccCHHHhcCCcCCCEE
Confidence            468999999999999986 6799999999999999999988 788999999999999997557777 6679999999999


Q ss_pred             ccCCcc
Q 039689          273 NNSNVG  278 (763)
Q Consensus       273 ~l~~~~  278 (763)
                      ++++|.
T Consensus       111 ~l~~n~  116 (285)
T 1ozn_A          111 HLDRCG  116 (285)
T ss_dssp             ECTTSC
T ss_pred             ECCCCc
Confidence            999987

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=99.68  E-value=2.2e-16  Score=162.37  Aligned_cols=81  Identities=21%  Similarity=0.194  Sum_probs=67.8

Q ss_pred             cEEEecCCCCCccCcccCCCCcccEEecCCCCchhcchh-hhhcccccEEeeccccccccc---cccccCcccccccccC
Q 039689          200 RVFSLRGYNIFELPKAIENLKHLRFLDLSTTKIEILRES-INTLYNLHTLLLEDCRRLKKL---CKDMGNLTKLHHLNNS  275 (763)
Q Consensus       200 r~L~L~~~~i~~lp~~~~~l~~L~~L~L~~~~i~~lp~~-~~~L~~L~~L~L~~~~~l~~l---p~~i~~L~~L~~L~l~  275 (763)
                      +.++.+++.++.+|..+.  ++|++|+|++|.++.+|.. |+++++|++|++++| .+..+   |..+..+++|++|+++
T Consensus        10 ~~l~c~~~~l~~ip~~~~--~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~~~~~~L~~L~Ls   86 (306)
T 2z66_A           10 TEIRCNSKGLTSVPTGIP--SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSN-GLSFKGCCSQSDFGTTSLKYLDLS   86 (306)
T ss_dssp             TEEECCSSCCSSCCSCCC--TTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSS-CCCEEEEEEHHHHSCSCCCEEECC
T ss_pred             CEEEcCCCCcccCCCCCC--CCCCEEECCCCccCccCHhHhhccccCCEEECCCC-ccCcccCcccccccccccCEEECC
Confidence            578889999999998664  7999999999999999876 699999999999995 55544   6677889999999999


Q ss_pred             Ccccccccc
Q 039689          276 NVGSLEEML  284 (763)
Q Consensus       276 ~~~~l~~l~  284 (763)
                      +|. +..++
T Consensus        87 ~n~-i~~l~   94 (306)
T 2z66_A           87 FNG-VITMS   94 (306)
T ss_dssp             SCS-EEEEE
T ss_pred             CCc-cccCh
Confidence            997 54443

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A*

Probab=99.67  E-value=5.2e-17  Score=182.45  Aligned_cols=133  Identities=16%  Similarity=0.207  Sum_probs=110.8

Q ss_pred             ChHHHHhhhhcCCCCCCCcchHHHHHHHHHHHcCCChHHHHHHHHHhcCCC-ChHHHHHHHhhhcccccCCccChHHHHH
Q 039689            1 MHWECYQKMTVCVCSLNMHQSLKEVGQKIAMKCKGLPLAAKTLGGLLRGKD-DPKDWENVLKTEVWDLADDKCDIIPALR   79 (763)
Q Consensus         1 ~~~~lf~~~af~~~~~~~~~~~~~~~~~i~~~c~GlPlal~~~g~~L~~~~-~~~~W~~~l~~~~~~~~~~~~~i~~~l~   79 (763)
                      +||+||++. |+..       ..+++.+|   |+|+||||+++|+.|+++. +.++|+.+          ....+..+|+
T Consensus       302 EA~eLF~~~-~g~~-------~eeL~~eI---CgGLPLALkLaGs~Lr~k~~s~eeW~~~----------~~~~I~aaLe  360 (1221)
T 1vt4_I          302 EVKSLLLKY-LDCR-------PQDLPREV---LTTNPRRLSIIAESIRDGLATWDNWKHV----------NCDKLTTIIE  360 (1221)
T ss_dssp             HHHHHHHHH-HCCC-------TTTHHHHH---CCCCHHHHHHHHHHHHHSCSSHHHHHHC----------SCHHHHHHHH
T ss_pred             HHHHHHHHH-cCCC-------HHHHHHHH---hCCCHHHHHHHHHHHhCCCCCHHHHhcC----------ChhHHHHHHH
Confidence            489999998 4432       12344444   9999999999999999874 47788763          1357999999


Q ss_pred             HHHhcCCHhH-HHHhhhhcccCCCCccCHHHHHHHHHHcCCcccCCCcccHHHHHHHHHHHHHHCCCcccccCCCCccee
Q 039689           80 VSYHFLPPQL-KQCFAYCSLFPKDHEFQKEQIILLWAAEGFLHQENSKRKMEDLGREFVEELHSRSLFHQSTYDASRFVM  158 (763)
Q Consensus        80 ~Sy~~L~~~~-k~~fl~~~~fp~~~~i~~~~li~~w~~~g~~~~~~~~~~~~~~~~~~~~~L~~~~ll~~~~~~~~~~~m  158 (763)
                      +||+.|++++ |.||++||+||+++.|+.+.++..|+++|           ++.+..++++|+++||++.. +...+++|
T Consensus       361 lSYd~Lp~eelK~cFL~LAIFPed~~I~~elLa~LW~aeG-----------eedAe~~L~eLvdRSLLq~d-~~~~rYrM  428 (1221)
T 1vt4_I          361 SSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVI-----------KSDVMVVVNKLHKYSLVEKQ-PKESTISI  428 (1221)
T ss_dssp             HHHHHSCTTHHHHHHHHTTSSCTTSCEEHHHHHHHHCSSC-----------SHHHHHHHHHHHTSSSSSBC-SSSSEEBC
T ss_pred             HHHHhCCHHHHHHHHHHHhCCCCCCCCCHHHHHHHhcCCC-----------HHHHHHHHHHHHhhCCEEEe-CCCCEEEe
Confidence            9999999998 99999999999999999999999999987           13478899999999999985 34567999


Q ss_pred             chhHHHHH
Q 039689          159 HDLINDLT  166 (763)
Q Consensus       159 hdli~~~~  166 (763)
                      ||++++++
T Consensus       429 HDLllELr  436 (1221)
T 1vt4_I          429 PSIYLELK  436 (1221)
T ss_dssp             CCHHHHHH
T ss_pred             hHHHHHHh
Confidence            99999865

>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*

Probab=99.67  E-value=1e-16  Score=197.88  Aligned_cols=154  Identities=21%  Similarity=0.319  Sum_probs=127.1

Q ss_pred             ChHHHHhhhhcCCCCCCCcchHHHHHHHHHHHcCCChHHHHHHHHHhcCCCChHHHHHHHhhhcccccC--------Ccc
Q 039689            1 MHWECYQKMTVCVCSLNMHQSLKEVGQKIAMKCKGLPLAAKTLGGLLRGKDDPKDWENVLKTEVWDLAD--------DKC   72 (763)
Q Consensus         1 ~~~~lf~~~af~~~~~~~~~~~~~~~~~i~~~c~GlPlal~~~g~~L~~~~~~~~W~~~l~~~~~~~~~--------~~~   72 (763)
                      +||+||++.|+..     .+++.+++++|+++|+|+||||+++|+.|+.++  ..|+.+++++......        ...
T Consensus       290 ~a~~l~~~~~~~~-----~~~~~~~~~~i~~~~~glPLal~~~~~~l~~~~--~~~~~~l~~l~~~~~~~~~~~~~~~~~  362 (1249)
T 3sfz_A          290 KGLEILSLFVNMK-----KEDLPAEAHSIIKECKGSPLVVSLIGALLRDFP--NRWAYYLRQLQNKQFKRIRKSSSYDYE  362 (1249)
T ss_dssp             HHHHHHHHHHTSC-----STTCCTHHHHHHHHTTTCHHHHHHHHHHHHHSS--SCHHHHHHHHHSCCCCCSSCTTCTTHH
T ss_pred             HHHHHHHHhhCCC-----hhhCcHHHHHHHHHhCCCHHHHHHHHHHhhcCh--hHHHHHHHHHhhhhhhhcccccccchH
Confidence            4899999998532     345567899999999999999999999999874  5798888876433211        123


Q ss_pred             ChHHHHHHHHhcCCHhHHHHhhhhcccCCCCccCHHHHHHHHHHcCCcccCCCcccHHHHHHHHHHHHHHCCCcccccCC
Q 039689           73 DIIPALRVSYHFLPPQLKQCFAYCSLFPKDHEFQKEQIILLWAAEGFLHQENSKRKMEDLGREFVEELHSRSLFHQSTYD  152 (763)
Q Consensus        73 ~i~~~l~~Sy~~L~~~~k~~fl~~~~fp~~~~i~~~~li~~w~~~g~~~~~~~~~~~~~~~~~~~~~L~~~~ll~~~~~~  152 (763)
                      .+..++++||+.|++++|.||+|||+||+++.|+++.++..|.++            ++.++.++++|+++||++...+.
T Consensus       363 ~~~~~l~~s~~~L~~~~~~~~~~l~~f~~~~~i~~~~~~~~~~~~------------~~~~~~~l~~L~~~sl~~~~~~~  430 (1249)
T 3sfz_A          363 ALDEAMSISVEMLREDIKDYYTDLSILQKDVKVPTKVLCVLWDLE------------TEEVEDILQEFVNKSLLFCNRNG  430 (1249)
T ss_dssp             HHHHHHHHHHHTSCTTTHHHHHHGGGSCTTCCEEHHHHHHHHTCC------------HHHHHHHHHHHHHTTSCEEEESS
T ss_pred             HHHHHHHHHHHhCCHHHHHHHHHhCccCCCCeeCHHHHHHHhCCC------------HHHHHHHHHHHHhccceEEecCC
Confidence            589999999999999999999999999999999999999999654            35678899999999999976422


Q ss_pred             -CCcceechhHHHHHHHHhcCc
Q 039689          153 -ASRFVMHDLINDLTRWAAGET  173 (763)
Q Consensus       153 -~~~~~mhdli~~~~~~~~~~~  173 (763)
                       ..+++|||++|++++..+..+
T Consensus       431 ~~~~~~~h~l~~~~~~~~~~~~  452 (1249)
T 3sfz_A          431 KSFCYYLHDLQVDFLTEKNRSQ  452 (1249)
T ss_dssp             SSEEEECCHHHHHHHHHHTGGG
T ss_pred             CceEEEecHHHHHHHHhhhhHH
Confidence             335999999999999887654

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=99.67  E-value=3e-17  Score=169.03  Aligned_cols=82  Identities=17%  Similarity=0.099  Sum_probs=57.4

Q ss_pred             CCCCcccEEEecCCCCCccCcccCCCCcccEEecCCCCchh--cchhhh-------hcccccEEeeccccccccccccc-
Q 039689          194 LNLPRLRVFSLRGYNIFELPKAIENLKHLRFLDLSTTKIEI--LRESIN-------TLYNLHTLLLEDCRRLKKLCKDM-  263 (763)
Q Consensus       194 ~~l~~Lr~L~L~~~~i~~lp~~~~~l~~L~~L~L~~~~i~~--lp~~~~-------~L~~L~~L~L~~~~~l~~lp~~i-  263 (763)
                      ...++|+.|++++|.+ .+|..+...  |++|+|++|.++.  +|..+.       ++++|++|++++|.....+|..+ 
T Consensus        40 ~~~~~L~~l~l~~n~l-~~p~~~~~~--L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~  116 (312)
T 1wwl_A           40 GGGRSLEYLLKRVDTE-ADLGQFTDI--IKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLL  116 (312)
T ss_dssp             EEEEECTTHHHHCCTT-CCCHHHHHH--HHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCCSS
T ss_pred             ccCCCceeEeeccccc-ccHHHHHHH--HhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHHHH
Confidence            4456677777777777 677666544  7788888877753  566555       67788888888754444677765 


Q ss_pred             -cCcccccccccCCcc
Q 039689          264 -GNLTKLHHLNNSNVG  278 (763)
Q Consensus       264 -~~L~~L~~L~l~~~~  278 (763)
                       +.+++|++|++++|.
T Consensus       117 ~~~l~~L~~L~Ls~N~  132 (312)
T 1wwl_A          117 EATGPDLNILNLRNVS  132 (312)
T ss_dssp             SCCSCCCSEEEEESCB
T ss_pred             HhcCCCccEEEccCCC
Confidence             777788888877776

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.66  E-value=2.4e-16  Score=172.31  Aligned_cols=69  Identities=14%  Similarity=0.293  Sum_probs=45.6

Q ss_pred             CCcccccchhhhcCCCCcceEEEecCccccccCC-CCCCCCccEEEEccCCCC-CCCchhhhcCCCCCcceEeecc
Q 039689          567 NALESLPEAWMHNSNSSLESLKIRSCNSLVSFPD-FALPSQLRTVTIKGCDAL-ESLPEAWMQNSSTSLESLAIDS  640 (763)
Q Consensus       567 ~~l~~l~~~~~~~~l~~L~~L~l~~c~~l~~~~~-~~~~~~L~~L~l~~~~~l-~~~~~~~~~~~l~~L~~L~l~~  640 (763)
                      +.++.+|+.+.  .+++|+.|++++|. +..+|. +..+++|+.|++++|+.. ..+|..+  ..++.|+.+++..
T Consensus       201 N~l~~~~~~~~--~l~~L~~L~Ls~N~-l~~lp~~l~~l~~L~~L~l~~N~l~c~~~~~~~--~~l~~L~~l~~~~  271 (487)
T 3oja_A          201 NKLAFMGPEFQ--SAAGVTWISLRNNK-LVLIEKALRFSQNLEHFDLRGNGFHCGTLRDFF--SKNQRVQTVAKQT  271 (487)
T ss_dssp             SCCCEECGGGG--GGTTCSEEECTTSC-CCEECTTCCCCTTCCEEECTTCCBCHHHHHHHH--TTCHHHHHHHHHH
T ss_pred             CCCCCCCHhHc--CCCCccEEEecCCc-CcccchhhccCCCCCEEEcCCCCCcCcchHHHH--HhCCCCcEEeccc
Confidence            44555655532  26788888887755 455665 566788888888888655 3455544  6677777777753

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=99.64  E-value=2.9e-17  Score=186.05  Aligned_cols=78  Identities=9%  Similarity=0.052  Sum_probs=49.8

Q ss_pred             EEEecCCCCCccCcccCCCCcccEEecCCCC-chhc---------------chhhhhcccccEEeecccccccccccccc
Q 039689          201 VFSLRGYNIFELPKAIENLKHLRFLDLSTTK-IEIL---------------RESINTLYNLHTLLLEDCRRLKKLCKDMG  264 (763)
Q Consensus       201 ~L~L~~~~i~~lp~~~~~l~~L~~L~L~~~~-i~~l---------------p~~~~~L~~L~~L~L~~~~~l~~lp~~i~  264 (763)
                      .+++.++.....+..+.++++|++|+++++. +..+               +.....+++|++|++++|......+..+.
T Consensus        47 ~l~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~~~~~l~  126 (594)
T 2p1m_B           47 KVFIGNCYAVSPATVIRRFPKVRSVELKGKPHFADFNLVPDGWGGYVYPWIEAMSSSYTWLEEIRLKRMVVTDDCLELIA  126 (594)
T ss_dssp             EEEESSTTSSCHHHHHHHCTTCCEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCBCCHHHHHHHH
T ss_pred             EEeeccccccCHHHHHhhCCCceEEeccCCCchhhcccccccccchhhHHHHHHHHhCCCCCeEEeeCcEEcHHHHHHHH
Confidence            4455444322223456678899999999874 2211               12235778899999998753334444454


Q ss_pred             -CcccccccccCCcc
Q 039689          265 -NLTKLHHLNNSNVG  278 (763)
Q Consensus       265 -~L~~L~~L~l~~~~  278 (763)
                       .+++|++|++++|.
T Consensus       127 ~~~~~L~~L~L~~~~  141 (594)
T 2p1m_B          127 KSFKNFKVLVLSSCE  141 (594)
T ss_dssp             HHCTTCCEEEEESCE
T ss_pred             HhCCCCcEEeCCCcC
Confidence             67888888888885

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=99.63  E-value=4.8e-16  Score=153.42  Aligned_cols=96  Identities=20%  Similarity=0.277  Sum_probs=81.5

Q ss_pred             CcccEEEecCCCCCccCc-ccCCCCcccEEecCCCC-chhcch-hhhhcccccEEeeccccccccccc-cccCccccccc
Q 039689          197 PRLRVFSLRGYNIFELPK-AIENLKHLRFLDLSTTK-IEILRE-SINTLYNLHTLLLEDCRRLKKLCK-DMGNLTKLHHL  272 (763)
Q Consensus       197 ~~Lr~L~L~~~~i~~lp~-~~~~l~~L~~L~L~~~~-i~~lp~-~~~~L~~L~~L~L~~~~~l~~lp~-~i~~L~~L~~L  272 (763)
                      +.|++|++++|.++.+|. .|..+++|++|++++|. ++.+|. .|+++++|++|++++|+.+..+|. .++++++|++|
T Consensus        31 ~~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L  110 (239)
T 2xwt_C           31 PSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFL  110 (239)
T ss_dssp             TTCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEE
T ss_pred             CcccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEE
Confidence            389999999999999864 89999999999999997 998875 789999999999998678888875 58999999999


Q ss_pred             ccCCcccccccccCCCccCCC
Q 039689          273 NNSNVGSLEEMLMLKSLVHLQ  293 (763)
Q Consensus       273 ~l~~~~~l~~l~~l~~L~~L~  293 (763)
                      ++++|. +..+|.+..+..|+
T Consensus       111 ~l~~n~-l~~lp~~~~l~~L~  130 (239)
T 2xwt_C          111 GIFNTG-LKMFPDLTKVYSTD  130 (239)
T ss_dssp             EEEEEC-CCSCCCCTTCCBCC
T ss_pred             eCCCCC-Cccccccccccccc
Confidence            999998 76666555544443

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=99.61  E-value=1.9e-15  Score=155.53  Aligned_cols=199  Identities=18%  Similarity=0.206  Sum_probs=131.3

Q ss_pred             CCCcccEEEecCCCCC-ccCccc--CCCCcccEEecCCCCchhcchhhhhc-----ccccEEeecccccccccc-ccccC
Q 039689          195 NLPRLRVFSLRGYNIF-ELPKAI--ENLKHLRFLDLSTTKIEILRESINTL-----YNLHTLLLEDCRRLKKLC-KDMGN  265 (763)
Q Consensus       195 ~l~~Lr~L~L~~~~i~-~lp~~~--~~l~~L~~L~L~~~~i~~lp~~~~~L-----~~L~~L~L~~~~~l~~lp-~~i~~  265 (763)
                      .+++|++|++++|.++ .+|..+  ..+++|++|+|++|.++.+|..++.+     ++|++|++++| .+..+| ..+++
T Consensus        93 ~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~~~~~~L~~L~L~~N-~l~~~~~~~~~~  171 (312)
T 1wwl_A           93 GISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQA-HSLNFSCEQVRV  171 (312)
T ss_dssp             TTSCCCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESCBCSSSSSHHHHHHTTCCTTCCEEEEESC-SCCCCCTTTCCC
T ss_pred             CcCCccEEEccCCcccchhHHHHHHhcCCCccEEEccCCCCcchhHHHHHHHHhhcCCCcEEEeeCC-CCccchHHHhcc
Confidence            6899999999999998 468776  89999999999999999889999988     99999999995 566665 67999


Q ss_pred             cccccccccCCcccccc---cccC--CCccCCCceeeecCcccccCcccchhhhhcCcccccceEEeeccCCCCCCccHH
Q 039689          266 LTKLHHLNNSNVGSLEE---MLML--KSLVHLQGTLEISRLENVKGVGDASEVQLNSKVNLKALYLQWGVRDAVEPKTET  340 (763)
Q Consensus       266 L~~L~~L~l~~~~~l~~---l~~l--~~L~~L~~~L~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~  340 (763)
                      +++|++|++++|.....   .+.+  ..+++|+ .|.+.+.. +..........+..+++|+.|++++|......+    
T Consensus       172 l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~-~L~L~~N~-l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~----  245 (312)
T 1wwl_A          172 FPALSTLDLSDNPELGERGLISALCPLKFPTLQ-VLALRNAG-METPSGVCSALAAARVQLQGLDLSHNSLRDAAG----  245 (312)
T ss_dssp             CSSCCEEECCSCTTCHHHHHHHHSCTTSCTTCC-EEECTTSC-CCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCC----
T ss_pred             CCCCCEEECCCCCcCcchHHHHHHHhccCCCCC-EEECCCCc-CcchHHHHHHHHhcCCCCCEEECCCCcCCcccc----
Confidence            99999999999973322   1223  6777777 77776532 222223333445567788888887775433211    


Q ss_pred             HHhhcCCCCCCc-eEEEeeeCCCCCCCccCCCCCCCceEEEEeccCCCCCCCCCCCCCCCCcceeccc
Q 039689          341 QVIDMLKPHQKL-ELTITGYGGTKFPIWLGDSLFSKLMLLKFDNCGTCTSLPSVGQLPFLKDPVISGM  407 (763)
Q Consensus       341 ~~l~~l~~l~~L-~L~~~~~~~~~~p~~~~~~~~~~L~~L~l~~~~~~~~l~~l~~l~~L~~L~l~~~  407 (763)
                        ...+..++.| .|++.++....+|.++.    ++|+.|++++|.. ..+|.+..+++|++|+++++
T Consensus       246 --~~~~~~l~~L~~L~Ls~N~l~~ip~~~~----~~L~~L~Ls~N~l-~~~p~~~~l~~L~~L~L~~N  306 (312)
T 1wwl_A          246 --APSCDWPSQLNSLNLSFTGLKQVPKGLP----AKLSVLDLSYNRL-DRNPSPDELPQVGNLSLKGN  306 (312)
T ss_dssp             --CSCCCCCTTCCEEECTTSCCSSCCSSCC----SEEEEEECCSSCC-CSCCCTTTSCEEEEEECTTC
T ss_pred             --hhhhhhcCCCCEEECCCCccChhhhhcc----CCceEEECCCCCC-CCChhHhhCCCCCEEeccCC
Confidence              1112223444 55555555555554442    4555555555532 22244445555555555543

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=99.61  E-value=2e-15  Score=154.83  Aligned_cols=189  Identities=20%  Similarity=0.259  Sum_probs=124.6

Q ss_pred             CCCCcccEEEecCCCCCccCcccCCCCcccEEecCCCCchhcchhhhhcccccEEeeccccccccccccccCcccccccc
Q 039689          194 LNLPRLRVFSLRGYNIFELPKAIENLKHLRFLDLSTTKIEILRESINTLYNLHTLLLEDCRRLKKLCKDMGNLTKLHHLN  273 (763)
Q Consensus       194 ~~l~~Lr~L~L~~~~i~~lp~~~~~l~~L~~L~L~~~~i~~lp~~~~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~  273 (763)
                      ..+++|++|++++|.+..+| .+..+++|++|+|++|.++.+|. ++.+++|++|++++| .+..+| .++.+++|++|+
T Consensus        38 ~~l~~L~~L~l~~~~i~~l~-~~~~l~~L~~L~L~~n~i~~~~~-~~~l~~L~~L~L~~n-~l~~~~-~~~~l~~L~~L~  113 (308)
T 1h6u_A           38 ADLDGITTLSAFGTGVTTIE-GVQYLNNLIGLELKDNQITDLAP-LKNLTKITELELSGN-PLKNVS-AIAGLQSIKTLD  113 (308)
T ss_dssp             HHHHTCCEEECTTSCCCCCT-TGGGCTTCCEEECCSSCCCCCGG-GTTCCSCCEEECCSC-CCSCCG-GGTTCTTCCEEE
T ss_pred             HHcCCcCEEEeeCCCccCch-hhhccCCCCEEEccCCcCCCChh-HccCCCCCEEEccCC-cCCCch-hhcCCCCCCEEE
Confidence            34678888889888888876 57888889999999888888877 888889999999884 577775 588888899999


Q ss_pred             cCCcccccccccCCCccCCCceeeecCcccccCcccchhhhhcCcccccceEEeeccCCCCCCccHHHHhhcCCCCCCce
Q 039689          274 NSNVGSLEEMLMLKSLVHLQGTLEISRLENVKGVGDASEVQLNSKVNLKALYLQWGVRDAVEPKTETQVIDMLKPHQKLE  353 (763)
Q Consensus       274 l~~~~~l~~l~~l~~L~~L~~~L~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~l~~l~~L~  353 (763)
                      +++|. +..++.+..+++|+ .|.+.+..    +....  .+..+++|+.|+++.|..                      
T Consensus       114 l~~n~-l~~~~~l~~l~~L~-~L~l~~n~----l~~~~--~l~~l~~L~~L~l~~n~l----------------------  163 (308)
T 1h6u_A          114 LTSTQ-ITDVTPLAGLSNLQ-VLYLDLNQ----ITNIS--PLAGLTNLQYLSIGNAQV----------------------  163 (308)
T ss_dssp             CTTSC-CCCCGGGTTCTTCC-EEECCSSC----CCCCG--GGGGCTTCCEEECCSSCC----------------------
T ss_pred             CCCCC-CCCchhhcCCCCCC-EEECCCCc----cCcCc--cccCCCCccEEEccCCcC----------------------
Confidence            98887 77777677777777 66665531    11111  155666777777765532                      


Q ss_pred             EEEeeeCCCCCCCccCCCCCCCceEEEEeccCCCCCCCCCCCCCCCCcceecccCCceEeCccccCCCcCCCCCCcceee
Q 039689          354 LTITGYGGTKFPIWLGDSLFSKLMLLKFDNCGTCTSLPSVGQLPFLKDPVISGMGRVKIVGSEFYGSSCSVSFPSLETLF  433 (763)
Q Consensus       354 L~~~~~~~~~~p~~~~~~~~~~L~~L~l~~~~~~~~l~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~f~~L~~L~  433 (763)
                              ..++. +..  +++|+.|++++|. +..++.+..+++|+.|++++|.......        ...+++|+.|+
T Consensus       164 --------~~~~~-l~~--l~~L~~L~l~~n~-l~~~~~l~~l~~L~~L~L~~N~l~~~~~--------l~~l~~L~~L~  223 (308)
T 1h6u_A          164 --------SDLTP-LAN--LSKLTTLKADDNK-ISDISPLASLPNLIEVHLKNNQISDVSP--------LANTSNLFIVT  223 (308)
T ss_dssp             --------CCCGG-GTT--CTTCCEEECCSSC-CCCCGGGGGCTTCCEEECTTSCCCBCGG--------GTTCTTCCEEE
T ss_pred             --------CCChh-hcC--CCCCCEEECCCCc-cCcChhhcCCCCCCEEEccCCccCcccc--------ccCCCCCCEEE
Confidence                    22222 222  5566666666664 2334445566666666666654322211        12356666666


Q ss_pred             ccc
Q 039689          434 FVD  436 (763)
Q Consensus       434 l~~  436 (763)
                      +.+
T Consensus       224 l~~  226 (308)
T 1h6u_A          224 LTN  226 (308)
T ss_dssp             EEE
T ss_pred             ccC
Confidence            665

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=99.60  E-value=4.1e-15  Score=150.28  Aligned_cols=198  Identities=18%  Similarity=0.150  Sum_probs=148.0

Q ss_pred             CcccEEEecCCCCCccC-cccCCCCcccEEecCCCCchhcch-hhhhcccccEEeecccccccccc-ccccCcccccccc
Q 039689          197 PRLRVFSLRGYNIFELP-KAIENLKHLRFLDLSTTKIEILRE-SINTLYNLHTLLLEDCRRLKKLC-KDMGNLTKLHHLN  273 (763)
Q Consensus       197 ~~Lr~L~L~~~~i~~lp-~~~~~l~~L~~L~L~~~~i~~lp~-~~~~L~~L~~L~L~~~~~l~~lp-~~i~~L~~L~~L~  273 (763)
                      +.|++|++++|.++.++ ..|..+++|++|++++|.++.++. .|+++++|++|++++| .+..++ ..++++++|++|+
T Consensus        28 ~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~  106 (276)
T 2z62_A           28 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGN-PIQSLALGAFSGLSSLQKLV  106 (276)
T ss_dssp             TTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTC-CCCEECTTTTTTCTTCCEEE
T ss_pred             CCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCC-ccCccChhhhcCCccccEEE
Confidence            47999999999999886 489999999999999999998864 7899999999999995 566555 5699999999999


Q ss_pred             cCCccccccccc--CCCccCCCceeeecCcccccCcccc-hhhhhcCcccccceEEeeccCCCCCCccHHHHhhcCCCCC
Q 039689          274 NSNVGSLEEMLM--LKSLVHLQGTLEISRLENVKGVGDA-SEVQLNSKVNLKALYLQWGVRDAVEPKTETQVIDMLKPHQ  350 (763)
Q Consensus       274 l~~~~~l~~l~~--l~~L~~L~~~L~~~~~~~~~~~~~~-~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~l~~l~  350 (763)
                      +++|. +..++.  +..+++|+ .+.+.+..    +... .+..+..+++|+.|++++|.......    ..+..+..++
T Consensus       107 l~~n~-l~~~~~~~~~~l~~L~-~L~l~~n~----l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~----~~~~~l~~L~  176 (276)
T 2z62_A          107 AVETN-LASLENFPIGHLKTLK-ELNVAHNL----IQSFKLPEYFSNLTNLEHLDLSSNKIQSIYC----TDLRVLHQMP  176 (276)
T ss_dssp             CTTSC-CCCSTTCCCTTCTTCC-EEECCSSC----CCCCCCCGGGGGCTTCCEEECCSSCCCEECG----GGGHHHHTCT
T ss_pred             CCCCC-ccccCchhcccCCCCC-EEECcCCc----cceecCchhhccCCCCCEEECCCCCCCcCCH----HHhhhhhhcc
Confidence            99997 766655  77888888 78776532    2221 24567888999999998886543321    2334444555


Q ss_pred             Cc--eEEEeeeCCCCCCCccCCCCCCCceEEEEeccCCCCCCC--CCCCCCCCCcceecccC
Q 039689          351 KL--ELTITGYGGTKFPIWLGDSLFSKLMLLKFDNCGTCTSLP--SVGQLPFLKDPVISGMG  408 (763)
Q Consensus       351 ~L--~L~~~~~~~~~~p~~~~~~~~~~L~~L~l~~~~~~~~l~--~l~~l~~L~~L~l~~~~  408 (763)
                      .+  .+++.++....+|.....  ..+|+.|++++|... .++  .++.+++|+.|++++++
T Consensus       177 ~l~l~L~ls~n~l~~~~~~~~~--~~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~l~~N~  235 (276)
T 2z62_A          177 LLNLSLDLSLNPMNFIQPGAFK--EIRLKELALDTNQLK-SVPDGIFDRLTSLQKIWLHTNP  235 (276)
T ss_dssp             TCCEEEECCSSCCCEECTTSSC--SCCEEEEECCSSCCS-CCCTTTTTTCCSCCEEECCSSC
T ss_pred             ccceeeecCCCcccccCccccC--CCcccEEECCCCcee-ecCHhHhcccccccEEEccCCc
Confidence            55  567777777777665544  458899999988643 444  36778888888888764

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=99.59  E-value=6.4e-15  Score=148.28  Aligned_cols=203  Identities=18%  Similarity=0.188  Sum_probs=121.6

Q ss_pred             CCCCcccEEEecCCCCCccCcccCCCCcccEEecCCCCchhcchhhhhcccccEEeecccccccccccc-ccCccccccc
Q 039689          194 LNLPRLRVFSLRGYNIFELPKAIENLKHLRFLDLSTTKIEILRESINTLYNLHTLLLEDCRRLKKLCKD-MGNLTKLHHL  272 (763)
Q Consensus       194 ~~l~~Lr~L~L~~~~i~~lp~~~~~l~~L~~L~L~~~~i~~lp~~~~~L~~L~~L~L~~~~~l~~lp~~-i~~L~~L~~L  272 (763)
                      ..+++|+.|++++|.+..++ .+..+++|++|++++|.++.++ .++.+++|++|++++| .+..+|.. ++++++|++|
T Consensus        38 ~~l~~L~~L~l~~~~i~~~~-~l~~l~~L~~L~l~~n~l~~~~-~l~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L  114 (272)
T 3rfs_A           38 NELNSIDQIIANNSDIKSVQ-GIQYLPNVRYLALGGNKLHDIS-ALKELTNLTYLILTGN-QLQSLPNGVFDKLTNLKEL  114 (272)
T ss_dssp             HHHTTCCEEECTTSCCCCCT-TGGGCTTCCEEECTTSCCCCCG-GGTTCTTCCEEECTTS-CCCCCCTTTTTTCTTCCEE
T ss_pred             ccccceeeeeeCCCCccccc-ccccCCCCcEEECCCCCCCCch-hhcCCCCCCEEECCCC-ccCccChhHhcCCcCCCEE
Confidence            34567777777777776654 3667777777777777777654 6777777777777774 55555544 5777777777


Q ss_pred             ccCCccccccccc--CCCccCCCceeeecCcccccCcccchhhhhcCcccccceEEeeccCCCCCCccHHHHhhcCCCCC
Q 039689          273 NNSNVGSLEEMLM--LKSLVHLQGTLEISRLENVKGVGDASEVQLNSKVNLKALYLQWGVRDAVEPKTETQVIDMLKPHQ  350 (763)
Q Consensus       273 ~l~~~~~l~~l~~--l~~L~~L~~~L~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~l~~l~  350 (763)
                      ++++|. +..++.  +..+++|+ .|.+.+.    .+.......+..+++|+.|++++|                     
T Consensus       115 ~L~~n~-l~~~~~~~~~~l~~L~-~L~L~~n----~l~~~~~~~~~~l~~L~~L~l~~n---------------------  167 (272)
T 3rfs_A          115 VLVENQ-LQSLPDGVFDKLTNLT-YLNLAHN----QLQSLPKGVFDKLTNLTELDLSYN---------------------  167 (272)
T ss_dssp             ECTTSC-CCCCCTTTTTTCTTCC-EEECCSS----CCCCCCTTTTTTCTTCCEEECCSS---------------------
T ss_pred             ECCCCc-CCccCHHHhccCCCCC-EEECCCC----ccCccCHHHhccCccCCEEECCCC---------------------
Confidence            777776 554443  34444444 4444332    111122223444555555555444                     


Q ss_pred             CceEEEeeeCCCCCCCc-cCCCCCCCceEEEEeccCCCCCCC-CCCCCCCCCcceecccCCceEeCccccCCCcCCCCCC
Q 039689          351 KLELTITGYGGTKFPIW-LGDSLFSKLMLLKFDNCGTCTSLP-SVGQLPFLKDPVISGMGRVKIVGSEFYGSSCSVSFPS  428 (763)
Q Consensus       351 ~L~L~~~~~~~~~~p~~-~~~~~~~~L~~L~l~~~~~~~~l~-~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~f~~  428 (763)
                               ....+|.. +..  +++|+.|++++|......+ .++.+++|+.|++++|+..             ..+++
T Consensus       168 ---------~l~~~~~~~~~~--l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~-------------~~~~~  223 (272)
T 3rfs_A          168 ---------QLQSLPEGVFDK--LTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWD-------------CTCPG  223 (272)
T ss_dssp             ---------CCCCCCTTTTTT--CTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBC-------------CCTTT
T ss_pred             ---------CcCccCHHHhcC--CccCCEEECCCCcCCccCHHHHhCCcCCCEEEccCCCcc-------------ccCcH
Confidence                     33333332 233  6788888888886544333 3677888888888876422             12667


Q ss_pred             cceeeccccchhhhcCCCCcCCcc
Q 039689          429 LETLFFVDICSKLQGTLPERLLLL  452 (763)
Q Consensus       429 L~~L~l~~~~~~l~~~~~~~~~~L  452 (763)
                      |+.|.+..  +.+.+.+|..+..+
T Consensus       224 l~~l~~~~--n~~~g~ip~~~~~~  245 (272)
T 3rfs_A          224 IRYLSEWI--NKHSGVVRNSAGSV  245 (272)
T ss_dssp             THHHHHHH--HHTGGGBBCTTSCB
T ss_pred             HHHHHHHH--HhCCCcccCccccc
Confidence            77777765  55666666544433

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=99.59  E-value=1.5e-14  Score=142.68  Aligned_cols=197  Identities=15%  Similarity=0.171  Sum_probs=133.4

Q ss_pred             CCCceEEEeccCCccccccccCcCC-ccccccCceeeccCCchhhhcceeeeccCCCcccccchhhhcCCCCcceEEEec
Q 039689          513 PKLERLEIQHVREQTYLWRSETRLP-QDIRSLNRLQISRCPQLISLLRTVKIEDCNALESLPEAWMHNSNSSLESLKIRS  591 (763)
Q Consensus       513 ~~L~~L~l~~~~~l~~l~~~~~~~p-~~l~~L~~L~l~~~~~l~~~L~~L~l~~~~~l~~l~~~~~~~~l~~L~~L~l~~  591 (763)
                      ++|++|++++|....        +| ..+..+..            |++|++++|..++.++...+ ..+++|++|++++
T Consensus        31 ~~l~~L~l~~n~l~~--------i~~~~~~~l~~------------L~~L~l~~n~~l~~i~~~~f-~~l~~L~~L~l~~   89 (239)
T 2xwt_C           31 PSTQTLKLIETHLRT--------IPSHAFSNLPN------------ISRIYVSIDVTLQQLESHSF-YNLSKVTHIEIRN   89 (239)
T ss_dssp             TTCCEEEEESCCCSE--------ECTTTTTTCTT------------CCEEEEECCSSCCEECTTTE-ESCTTCCEEEEEE
T ss_pred             CcccEEEEeCCcceE--------ECHHHccCCCC------------CcEEeCCCCCCcceeCHhHc-CCCcCCcEEECCC
Confidence            468888888876432        22 12222222            55555555444777776533 2478888888887


Q ss_pred             CccccccCC--CCCCCCccEEEEccCCCCCCCchhhhcCCCCCcc---eEeeccCCCccccccccCCCCCcEEEEecCCC
Q 039689          592 CNSLVSFPD--FALPSQLRTVTIKGCDALESLPEAWMQNSSTSLE---SLAIDSCDSLTYIARIQLPPSLKRLIIFRCDN  666 (763)
Q Consensus       592 c~~l~~~~~--~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~---~L~l~~c~~l~~l~~~~~~~~L~~L~l~~c~~  666 (763)
                      |+.++.++.  +..+++|++|++++|. ++.+|. +  ..+++|+   .|++++|+.++.++...+.             
T Consensus        90 ~n~l~~i~~~~f~~l~~L~~L~l~~n~-l~~lp~-~--~~l~~L~~L~~L~l~~N~~l~~i~~~~~~-------------  152 (239)
T 2xwt_C           90 TRNLTYIDPDALKELPLLKFLGIFNTG-LKMFPD-L--TKVYSTDIFFILEITDNPYMTSIPVNAFQ-------------  152 (239)
T ss_dssp             ETTCCEECTTSEECCTTCCEEEEEEEC-CCSCCC-C--TTCCBCCSEEEEEEESCTTCCEECTTTTT-------------
T ss_pred             CCCeeEcCHHHhCCCCCCCEEeCCCCC-Cccccc-c--ccccccccccEEECCCCcchhhcCccccc-------------
Confidence            666777764  4567888888888884 555775 4  6677777   8888888777777655442             


Q ss_pred             CCCCccc-eEEecCCCCCccccCC---CCCCcCeEeeccCCCCccccCC-CCCC-CCcCceecccCCCCccccCCCcccc
Q 039689          667 LRFNSLR-KLKISGGCPDLVSSPR---FPASLTELKISDMPSLERLSSI-GENL-TSLKFLDLDNCPKLKYFSKQGLPKS  740 (763)
Q Consensus       667 l~~~~L~-~L~l~~~~~~l~~~~~---~~~~L~~L~l~~~~~l~~ip~~-~~~l-~~L~~L~l~~c~~L~~l~~~~~~~~  740 (763)
                       .+++|+ .+++++  +.+..+|.   ..++|++|++++|..++.+|.. +..+ ++|++|+++++ .++.+|.. ..++
T Consensus       153 -~l~~L~~~L~l~~--n~l~~i~~~~~~~~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N-~l~~l~~~-~~~~  227 (239)
T 2xwt_C          153 -GLCNETLTLKLYN--NGFTSVQGYAFNGTKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQT-SVTALPSK-GLEH  227 (239)
T ss_dssp             -TTBSSEEEEECCS--CCCCEECTTTTTTCEEEEEECTTCTTCCEECTTTTTTCSBCCSEEECTTC-CCCCCCCT-TCTT
T ss_pred             -chhcceeEEEcCC--CCCcccCHhhcCCCCCCEEEcCCCCCcccCCHHHhhccccCCcEEECCCC-ccccCChh-Hhcc
Confidence             345566 666655  44555554   2358999999996568888755 4778 99999999995 78888876 4579


Q ss_pred             cceeeeccChhH
Q 039689          741 LLRLIIDECPLI  752 (763)
Q Consensus       741 L~~L~i~~C~~l  752 (763)
                      |+.|++++++.|
T Consensus       228 L~~L~l~~~~~l  239 (239)
T 2xwt_C          228 LKELIARNTWTL  239 (239)
T ss_dssp             CSEEECTTC---
T ss_pred             CceeeccCccCC
Confidence            999999999864

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=99.57  E-value=3.5e-15  Score=153.94  Aligned_cols=240  Identities=14%  Similarity=0.085  Sum_probs=157.2

Q ss_pred             hhhccCCCCcccEEEecCCCCCccC-cccCCCCcccEEecCCCCchhcchhhhhcccccEEeeccccccccccccccCcc
Q 039689          189 VLQRLLNLPRLRVFSLRGYNIFELP-KAIENLKHLRFLDLSTTKIEILRESINTLYNLHTLLLEDCRRLKKLCKDMGNLT  267 (763)
Q Consensus       189 ~~~~~~~l~~Lr~L~L~~~~i~~lp-~~~~~l~~L~~L~L~~~~i~~lp~~~~~L~~L~~L~L~~~~~l~~lp~~i~~L~  267 (763)
                      ...-+..+++|++|++++|.++.++ ..|..+++|++|+|++|.++.+++ ++.+++|++|++++| .+..+|.    .+
T Consensus        26 ~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-~~~l~~L~~L~Ls~n-~l~~l~~----~~   99 (317)
T 3o53_A           26 LASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD-LESLSTLRTLDLNNN-YVQELLV----GP   99 (317)
T ss_dssp             HHHHHTTGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE-ETTCTTCCEEECCSS-EEEEEEE----CT
T ss_pred             HHHHhccCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh-hhhcCCCCEEECcCC-ccccccC----CC
Confidence            3334477889999999999998885 789999999999999999987765 899999999999994 6776663    48


Q ss_pred             cccccccCCcccccccccCCCccCCCceeeecCcccccCcccchhhhhcCcccccceEEeeccCCCCCCccHHHHhhcCC
Q 039689          268 KLHHLNNSNVGSLEEMLMLKSLVHLQGTLEISRLENVKGVGDASEVQLNSKVNLKALYLQWGVRDAVEPKTETQVIDMLK  347 (763)
Q Consensus       268 ~L~~L~l~~~~~l~~l~~l~~L~~L~~~L~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~l~  347 (763)
                      +|++|++++|. +..++. ..+++|+ .+.+.+.    .+.......+..+++|+.|++++|.....             
T Consensus       100 ~L~~L~l~~n~-l~~~~~-~~~~~L~-~L~l~~N----~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~-------------  159 (317)
T 3o53_A          100 SIETLHAANNN-ISRVSC-SRGQGKK-NIYLANN----KITMLRDLDEGCRSRVQYLDLKLNEIDTV-------------  159 (317)
T ss_dssp             TCCEEECCSSC-CSEEEE-CCCSSCE-EEECCSS----CCCSGGGBCTGGGSSEEEEECTTSCCCEE-------------
T ss_pred             CcCEEECCCCc-cCCcCc-cccCCCC-EEECCCC----CCCCccchhhhccCCCCEEECCCCCCCcc-------------
Confidence            99999999997 666553 2355565 5555442    22333344556677777777766532211             


Q ss_pred             CCCCceEEEeeeCCCCCCCccCCCCCCCceEEEEeccCCCCCCCCCCCCCCCCcceecccCCceEeCccccCCCcCCCCC
Q 039689          348 PHQKLELTITGYGGTKFPIWLGDSLFSKLMLLKFDNCGTCTSLPSVGQLPFLKDPVISGMGRVKIVGSEFYGSSCSVSFP  427 (763)
Q Consensus       348 ~l~~L~L~~~~~~~~~~p~~~~~~~~~~L~~L~l~~~~~~~~l~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~f~  427 (763)
                                      .|..+.. .+++|+.|++++|. +..++....+++|+.|++++|.... ++..+      ..++
T Consensus       160 ----------------~~~~~~~-~l~~L~~L~L~~N~-l~~~~~~~~l~~L~~L~Ls~N~l~~-l~~~~------~~l~  214 (317)
T 3o53_A          160 ----------------NFAELAA-SSDTLEHLNLQYNF-IYDVKGQVVFAKLKTLDLSSNKLAF-MGPEF------QSAA  214 (317)
T ss_dssp             ----------------EGGGGGG-GTTTCCEEECTTSC-CCEEECCCCCTTCCEEECCSSCCCE-ECGGG------GGGT
T ss_pred             ----------------cHHHHhh-ccCcCCEEECCCCc-CcccccccccccCCEEECCCCcCCc-chhhh------cccC
Confidence                            0111210 15677777777775 3344555557777777777764433 32223      2367


Q ss_pred             CcceeeccccchhhhcCCC---CcCCcccEEEEecCcch----hhcCCCCCcccEEEEecCC
Q 039689          428 SLETLFFVDICSKLQGTLP---ERLLLLEKLNIFRCEQL----LVTLQCLPALRELEIDGCK  482 (763)
Q Consensus       428 ~L~~L~l~~~~~~l~~~~~---~~~~~L~~L~l~~~~~l----~~~l~~l~~L~~L~l~~~~  482 (763)
                      +|+.|++.+  +.+. .+|   ..+++|+.|++.+|+..    +..+..+++|+.+++.++.
T Consensus       215 ~L~~L~L~~--N~l~-~l~~~~~~l~~L~~L~l~~N~~~~~~~~~~~~~~~~L~~l~l~~~~  273 (317)
T 3o53_A          215 GVTWISLRN--NKLV-LIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVK  273 (317)
T ss_dssp             TCSEEECTT--SCCC-EECTTCCCCTTCCEEECTTCCCBHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred             cccEEECcC--Cccc-chhhHhhcCCCCCEEEccCCCccCcCHHHHHhccccceEEECCCch
Confidence            777777776  2333 223   35678888888877532    3345566677766666543

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=99.57  E-value=2.7e-14  Score=143.54  Aligned_cols=77  Identities=22%  Similarity=0.310  Sum_probs=42.9

Q ss_pred             ccEEEecCCCCCccCcccCCCCcccEEecCCCCchhcch-hhhhcccccEEeecccccccccccc-ccCcccccccccCC
Q 039689          199 LRVFSLRGYNIFELPKAIENLKHLRFLDLSTTKIEILRE-SINTLYNLHTLLLEDCRRLKKLCKD-MGNLTKLHHLNNSN  276 (763)
Q Consensus       199 Lr~L~L~~~~i~~lp~~~~~l~~L~~L~L~~~~i~~lp~-~~~~L~~L~~L~L~~~~~l~~lp~~-i~~L~~L~~L~l~~  276 (763)
                      .++++++++.++.+|..+.  .+|++|+|++|.++.+|. .|+++++|++|++++ +.+..+|.. +.++++|++|++++
T Consensus        18 ~~~l~~~~~~l~~ip~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~-n~l~~i~~~~~~~l~~L~~L~l~~   94 (270)
T 2o6q_A           18 KNSVDCSSKKLTAIPSNIP--ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLND-NKLQTLPAGIFKELKNLETLWVTD   94 (270)
T ss_dssp             TTEEECTTSCCSSCCSCCC--TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCS-SCCSCCCTTTTSSCTTCCEEECCS
T ss_pred             CCEEEccCCCCCccCCCCC--CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCC-CccCeeChhhhcCCCCCCEEECCC
Confidence            4555666666555555443  455666666666655543 455566666666655 344555544 35566666666665


Q ss_pred             cc
Q 039689          277 VG  278 (763)
Q Consensus       277 ~~  278 (763)
                      |.
T Consensus        95 n~   96 (270)
T 2o6q_A           95 NK   96 (270)
T ss_dssp             SC
T ss_pred             Cc
Confidence            54

>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}

Probab=99.56  E-value=4.3e-15  Score=167.48  Aligned_cols=151  Identities=24%  Similarity=0.346  Sum_probs=122.1

Q ss_pred             ChHHHHhhhhcCCCCCCCcchHHHHHHHHHHHcCCChHHHHHHHHHhcCCCChHHHHHHHhhhccccc--------CCcc
Q 039689            1 MHWECYQKMTVCVCSLNMHQSLKEVGQKIAMKCKGLPLAAKTLGGLLRGKDDPKDWENVLKTEVWDLA--------DDKC   72 (763)
Q Consensus         1 ~~~~lf~~~af~~~~~~~~~~~~~~~~~i~~~c~GlPlal~~~g~~L~~~~~~~~W~~~l~~~~~~~~--------~~~~   72 (763)
                      +||+||.+.++..     .+...+.+.+|+++|+|+|+||+.+|+.|+.++  ..|+.+++.+.....        ....
T Consensus       290 ea~~L~~~~~~~~-----~~~~~~~~~~i~~~~~G~PLal~~~a~~l~~~~--~~w~~~l~~l~~~~~~~~~~~~~~~~~  362 (591)
T 1z6t_A          290 KGLEILSLFVNMK-----KADLPEQAHSIIKECKGSPLVVSLIGALLRDFP--NRWEYYLKQLQNKQFKRIRKSSSYDYE  362 (591)
T ss_dssp             HHHHHHHHHHTSC-----GGGSCTHHHHHHHHHTTCHHHHHHHHHHHHHST--TCHHHHHHHHHSCCCCCSSCCCSSCCH
T ss_pred             HHHHHHHHHhCCC-----cccccHHHHHHHHHhCCCcHHHHHHHHHHhcCc--hhHHHHHHHHHHhHHHHhhhccccchH
Confidence            4899999998642     233456899999999999999999999999863  479988876543221        1224


Q ss_pred             ChHHHHHHHHhcCCHhHHHHhhhhcccCCCCccCHHHHHHHHHHcCCcccCCCcccHHHHHHHHHHHHHHCCCccccc-C
Q 039689           73 DIIPALRVSYHFLPPQLKQCFAYCSLFPKDHEFQKEQIILLWAAEGFLHQENSKRKMEDLGREFVEELHSRSLFHQST-Y  151 (763)
Q Consensus        73 ~i~~~l~~Sy~~L~~~~k~~fl~~~~fp~~~~i~~~~li~~w~~~g~~~~~~~~~~~~~~~~~~~~~L~~~~ll~~~~-~  151 (763)
                      .+..+++.||+.|+++.|.||+++|+||+|+.|+.+.+...|.+.            .+.+..++++|+++||++... +
T Consensus       363 ~l~~~l~~s~~~L~~~~~~~l~~la~f~~~~~i~~~~l~~l~~~~------------~~~~~~~l~~L~~~~Ll~~~~~~  430 (591)
T 1z6t_A          363 ALDEAMSISVEMLREDIKDYYTDLSILQKDVKVPTKVLCILWDME------------TEEVEDILQEFVNKSLLFCDRNG  430 (591)
T ss_dssp             HHHHHHHHHHHTSCTTTHHHHHHGGGCCTTCCEEHHHHHHHHTCC------------HHHHHHHHHHHHHTTSSEEEEET
T ss_pred             HHHHHHHHHHHhCCHHHHHHHHHccccCCCCccCHHHHHHHhccC------------HHHHHHHHHHHHhCcCeEEecCC
Confidence            688999999999999999999999999999999999999999643            234678999999999998653 2


Q ss_pred             CCCcceechhHHHHHHHHh
Q 039689          152 DASRFVMHDLINDLTRWAA  170 (763)
Q Consensus       152 ~~~~~~mhdli~~~~~~~~  170 (763)
                      ...++.|||+++++++...
T Consensus       431 ~~~~~~~H~lv~~~~~~~~  449 (591)
T 1z6t_A          431 KSFRYYLHDLQVDFLTEKN  449 (591)
T ss_dssp             TEEEEECCHHHHHHHHHHT
T ss_pred             CccEEEEcHHHHHHHHhhh
Confidence            3347999999999998763

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=99.56  E-value=3.1e-14  Score=144.40  Aligned_cols=195  Identities=22%  Similarity=0.212  Sum_probs=125.4

Q ss_pred             cCCCCcccEEEecCCCCCccCcccCCCCcccEEecCCCCchhc-chhhhhcccccEEeeccccccccccccccCcccccc
Q 039689          193 LLNLPRLRVFSLRGYNIFELPKAIENLKHLRFLDLSTTKIEIL-RESINTLYNLHTLLLEDCRRLKKLCKDMGNLTKLHH  271 (763)
Q Consensus       193 ~~~l~~Lr~L~L~~~~i~~lp~~~~~l~~L~~L~L~~~~i~~l-p~~~~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~  271 (763)
                      +.++++++.++++++.++.+|..+.  +++++|+|++|.++.+ |..|..+++|++|++++ +.+..+|.. +.+++|++
T Consensus         6 ~~~l~~l~~l~~~~~~l~~ip~~~~--~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~-n~l~~~~~~-~~l~~L~~   81 (290)
T 1p9a_G            6 VSKVASHLEVNCDKRNLTALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDR-AELTKLQVD-GTLPVLGT   81 (290)
T ss_dssp             EECSTTCCEEECTTSCCSSCCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTT-SCCCEEECC-SCCTTCCE
T ss_pred             ccccCCccEEECCCCCCCcCCCCCC--CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCC-CccCcccCC-CCCCcCCE
Confidence            4667888888998888888887664  6888899998888877 56788888999999988 567777764 78888899


Q ss_pred             cccCCccccccccc-CCCccCCCceeeecCcccccCcccchhhhhcCcccccceEEeeccCCCCCCccHHHHhhcCCCCC
Q 039689          272 LNNSNVGSLEEMLM-LKSLVHLQGTLEISRLENVKGVGDASEVQLNSKVNLKALYLQWGVRDAVEPKTETQVIDMLKPHQ  350 (763)
Q Consensus       272 L~l~~~~~l~~l~~-l~~L~~L~~~L~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~l~~l~  350 (763)
                      |++++|. +..+|. +..+++|+ .|.+.+.    .+.......+.++++|+.|++++|                     
T Consensus        82 L~Ls~N~-l~~l~~~~~~l~~L~-~L~l~~N----~l~~l~~~~~~~l~~L~~L~L~~N---------------------  134 (290)
T 1p9a_G           82 LDLSHNQ-LQSLPLLGQTLPALT-VLDVSFN----RLTSLPLGALRGLGELQELYLKGN---------------------  134 (290)
T ss_dssp             EECCSSC-CSSCCCCTTTCTTCC-EEECCSS----CCCCCCSSTTTTCTTCCEEECTTS---------------------
T ss_pred             EECCCCc-CCcCchhhccCCCCC-EEECCCC----cCcccCHHHHcCCCCCCEEECCCC---------------------
Confidence            9988887 666654 44555555 5554431    122222234555556666655544                     


Q ss_pred             CceEEEeeeCCCCCCCcc-CCCCCCCceEEEEeccCCCCCCC--CCCCCCCCCcceecccCCceEeCccccCCCcCCCCC
Q 039689          351 KLELTITGYGGTKFPIWL-GDSLFSKLMLLKFDNCGTCTSLP--SVGQLPFLKDPVISGMGRVKIVGSEFYGSSCSVSFP  427 (763)
Q Consensus       351 ~L~L~~~~~~~~~~p~~~-~~~~~~~L~~L~l~~~~~~~~l~--~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~f~  427 (763)
                               ....+|... ..  +++|+.|++++|... .+|  .+..+++|+.|++++|... .++..+.      ..+
T Consensus       135 ---------~l~~~~~~~~~~--l~~L~~L~L~~N~l~-~l~~~~~~~l~~L~~L~L~~N~l~-~ip~~~~------~~~  195 (290)
T 1p9a_G          135 ---------ELKTLPPGLLTP--TPKLEKLSLANNNLT-ELPAGLLNGLENLDTLLLQENSLY-TIPKGFF------GSH  195 (290)
T ss_dssp             ---------CCCCCCTTTTTT--CTTCCEEECTTSCCS-CCCTTTTTTCTTCCEEECCSSCCC-CCCTTTT------TTC
T ss_pred             ---------CCCccChhhccc--ccCCCEEECCCCcCC-ccCHHHhcCcCCCCEEECCCCcCC-ccChhhc------ccc
Confidence                     333444332 22  567777777777533 444  3566777777777765433 2322222      245


Q ss_pred             Ccceeecccc
Q 039689          428 SLETLFFVDI  437 (763)
Q Consensus       428 ~L~~L~l~~~  437 (763)
                      +|+.+++.++
T Consensus       196 ~L~~l~L~~N  205 (290)
T 1p9a_G          196 LLPFAFLHGN  205 (290)
T ss_dssp             CCSEEECCSC
T ss_pred             cCCeEEeCCC
Confidence            6777777663

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=99.54  E-value=3.1e-14  Score=143.77  Aligned_cols=80  Identities=19%  Similarity=0.316  Sum_probs=66.5

Q ss_pred             EEEecCCCCCccCcccCCCCcccEEecCCCCchhcch-hhhhcccccEEeeccccccccccc-cccCcccccccccCCcc
Q 039689          201 VFSLRGYNIFELPKAIENLKHLRFLDLSTTKIEILRE-SINTLYNLHTLLLEDCRRLKKLCK-DMGNLTKLHHLNNSNVG  278 (763)
Q Consensus       201 ~L~L~~~~i~~lp~~~~~l~~L~~L~L~~~~i~~lp~-~~~~L~~L~~L~L~~~~~l~~lp~-~i~~L~~L~~L~l~~~~  278 (763)
                      +.+..+..+..+|..+.  ++|++|++++|.++.+|. .|+++++|++|++++| .+..+|. .++++++|++|++++|.
T Consensus        11 ~~~c~~~~l~~ip~~l~--~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~L~~n~   87 (276)
T 2z62_A           11 TYQCMELNFYKIPDNLP--FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRC-EIQTIEDGAYQSLSHLSTLILTGNP   87 (276)
T ss_dssp             EEECTTSCCSSCCSSSC--TTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTC-CCCEECTTTTTTCTTCCEEECTTCC
T ss_pred             eEEecCCCccccCCCCC--CCccEEECCCCcccccCHhHhccccCCcEEECCCC-cCCccCHHHccCCcCCCEEECCCCc
Confidence            45666777888888765  689999999999998865 8899999999999995 6767665 69999999999999997


Q ss_pred             cccccc
Q 039689          279 SLEEML  284 (763)
Q Consensus       279 ~l~~l~  284 (763)
                       +..++
T Consensus        88 -l~~~~   92 (276)
T 2z62_A           88 -IQSLA   92 (276)
T ss_dssp             -CCEEC
T ss_pred             -cCccC
Confidence             55443

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=99.53  E-value=5.7e-14  Score=141.17  Aligned_cols=86  Identities=28%  Similarity=0.411  Sum_probs=74.9

Q ss_pred             CcccEEEecCCCCCccC-cccCCCCcccEEecCCCCchhcchh-hhhcccccEEeecccccccccccc-ccCcccccccc
Q 039689          197 PRLRVFSLRGYNIFELP-KAIENLKHLRFLDLSTTKIEILRES-INTLYNLHTLLLEDCRRLKKLCKD-MGNLTKLHHLN  273 (763)
Q Consensus       197 ~~Lr~L~L~~~~i~~lp-~~~~~l~~L~~L~L~~~~i~~lp~~-~~~L~~L~~L~L~~~~~l~~lp~~-i~~L~~L~~L~  273 (763)
                      +.++.|++++|.++.+| ..|..+++|++|+|++|.++.+|.. |.++++|++|++++ +.+..+|.. ++.+++|++|+
T Consensus        37 ~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~-n~l~~~~~~~~~~l~~L~~L~  115 (270)
T 2o6q_A           37 ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTD-NKLQALPIGVFDQLVNLAELR  115 (270)
T ss_dssp             TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECCS-SCCCCCCTTTTTTCSSCCEEE
T ss_pred             CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECCC-CcCCcCCHhHcccccCCCEEE
Confidence            57999999999999986 5899999999999999999999765 58899999999999 567777765 78999999999


Q ss_pred             cCCcccccccc
Q 039689          274 NSNVGSLEEML  284 (763)
Q Consensus       274 l~~~~~l~~l~  284 (763)
                      +++|. +..++
T Consensus       116 l~~n~-l~~~~  125 (270)
T 2o6q_A          116 LDRNQ-LKSLP  125 (270)
T ss_dssp             CCSSC-CCCCC
T ss_pred             CCCCc-cCeeC
Confidence            99997 55444

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=99.53  E-value=1.7e-13  Score=138.97  Aligned_cols=193  Identities=20%  Similarity=0.210  Sum_probs=118.9

Q ss_pred             CCCCCCceEEEeccCCccccccccCcCCccc-cccCceeeccCCchhhhcceeeeccCCCcccccchhhhcCCCCcceEE
Q 039689          510 QGLPKLERLEIQHVREQTYLWRSETRLPQDI-RSLNRLQISRCPQLISLLRTVKIEDCNALESLPEAWMHNSNSSLESLK  588 (763)
Q Consensus       510 ~~~~~L~~L~l~~~~~l~~l~~~~~~~p~~l-~~L~~L~l~~~~~l~~~L~~L~l~~~~~l~~l~~~~~~~~l~~L~~L~  588 (763)
                      +.++++++++++++...        .+|..+ ++++.|++++                +.++.++...+. .+++|++|+
T Consensus         7 ~~l~~l~~l~~~~~~l~--------~ip~~~~~~l~~L~L~~----------------N~l~~~~~~~~~-~l~~L~~L~   61 (290)
T 1p9a_G            7 SKVASHLEVNCDKRNLT--------ALPPDLPKDTTILHLSE----------------NLLYTFSLATLM-PYTRLTQLN   61 (290)
T ss_dssp             ECSTTCCEEECTTSCCS--------SCCSCCCTTCCEEECTT----------------SCCSEEEGGGGT-TCTTCCEEE
T ss_pred             cccCCccEEECCCCCCC--------cCCCCCCCCCCEEEcCC----------------CcCCccCHHHhh-cCCCCCEEE
Confidence            55677888887776532        344322 3444444444                556655544233 378888888


Q ss_pred             EecCccccccCCCCCCCCccEEEEccCCCCCCCchhhhcCCCCCcceEeeccCCCccccccccCCCCCcEEEEecCCCCC
Q 039689          589 IRSCNSLVSFPDFALPSQLRTVTIKGCDALESLPEAWMQNSSTSLESLAIDSCDSLTYIARIQLPPSLKRLIIFRCDNLR  668 (763)
Q Consensus       589 l~~c~~l~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~L~~L~l~~c~~l~  668 (763)
                      +++|. ++.++....+++|++|++++| .++.+|..+  ..+++|+.|++++| .++.++...+.              .
T Consensus        62 L~~n~-l~~~~~~~~l~~L~~L~Ls~N-~l~~l~~~~--~~l~~L~~L~l~~N-~l~~l~~~~~~--------------~  122 (290)
T 1p9a_G           62 LDRAE-LTKLQVDGTLPVLGTLDLSHN-QLQSLPLLG--QTLPALTVLDVSFN-RLTSLPLGALR--------------G  122 (290)
T ss_dssp             CTTSC-CCEEECCSCCTTCCEEECCSS-CCSSCCCCT--TTCTTCCEEECCSS-CCCCCCSSTTT--------------T
T ss_pred             CCCCc-cCcccCCCCCCcCCEEECCCC-cCCcCchhh--ccCCCCCEEECCCC-cCcccCHHHHc--------------C
Confidence            87654 566665567778888888887 556777655  67788888888877 66666654432              2


Q ss_pred             CCccceEEecCCCCCccccCC----CCCCcCeEeeccCCCCccccCCC-CCCCCcCceecccCCCCccccCCC-cccccc
Q 039689          669 FNSLRKLKISGGCPDLVSSPR----FPASLTELKISDMPSLERLSSIG-ENLTSLKFLDLDNCPKLKYFSKQG-LPKSLL  742 (763)
Q Consensus       669 ~~~L~~L~l~~~~~~l~~~~~----~~~~L~~L~l~~~~~l~~ip~~~-~~l~~L~~L~l~~c~~L~~l~~~~-~~~~L~  742 (763)
                      +++|+.|++++  +.+..+|.    .+++|++|++++ +.++.+|... ..+++|++|++++| +++.+|... -.++|+
T Consensus       123 l~~L~~L~L~~--N~l~~~~~~~~~~l~~L~~L~L~~-N~l~~l~~~~~~~l~~L~~L~L~~N-~l~~ip~~~~~~~~L~  198 (290)
T 1p9a_G          123 LGELQELYLKG--NELKTLPPGLLTPTPKLEKLSLAN-NNLTELPAGLLNGLENLDTLLLQEN-SLYTIPKGFFGSHLLP  198 (290)
T ss_dssp             CTTCCEEECTT--SCCCCCCTTTTTTCTTCCEEECTT-SCCSCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCCCS
T ss_pred             CCCCCEEECCC--CCCCccChhhcccccCCCEEECCC-CcCCccCHHHhcCcCCCCEEECCCC-cCCccChhhcccccCC
Confidence            34555555554  34444443    345777777777 4666776554 56777777777774 566666532 224677


Q ss_pred             eeeeccCh
Q 039689          743 RLIIDECP  750 (763)
Q Consensus       743 ~L~i~~C~  750 (763)
                      .++++++|
T Consensus       199 ~l~L~~Np  206 (290)
T 1p9a_G          199 FAFLHGNP  206 (290)
T ss_dssp             EEECCSCC
T ss_pred             eEEeCCCC
Confidence            77776543

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.52  E-value=5.3e-14  Score=153.78  Aligned_cols=212  Identities=14%  Similarity=0.049  Sum_probs=130.4

Q ss_pred             CcCCcccEEEEecCcc---hhhcCCCCCcccEEEEecCCcccccCCCccccceeccccchhhhhhcCCCCCCceEEEecc
Q 039689          447 ERLLLLEKLNIFRCEQ---LLVTLQCLPALRELEIDGCKGVVLSSPTDLSSLKLVHSRDMAKEVFEQGLPKLERLEIQHV  523 (763)
Q Consensus       447 ~~~~~L~~L~l~~~~~---l~~~l~~l~~L~~L~l~~~~~~~~~~~~~L~~L~~~~~~~~~~~~~~~~~~~L~~L~l~~~  523 (763)
                      ..+++|+.|++++|..   .+..+..+++|++|++++|.......                    +..+++|++|++++|
T Consensus        31 ~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~--------------------l~~l~~L~~L~Ls~N   90 (487)
T 3oja_A           31 QSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--------------------LESLSTLRTLDLNNN   90 (487)
T ss_dssp             TTGGGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE--------------------CTTCTTCCEEECCSS
T ss_pred             ccCCCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc--------------------cccCCCCCEEEecCC
Confidence            3455777777777652   22356778888888888886543221                    256778888888887


Q ss_pred             CCccccccccCcCCccccccCceeeccCCchhhhcceeeeccCCCcccccchhhhcCCCCcceEEEecCccccccCC-CC
Q 039689          524 REQTYLWRSETRLPQDIRSLNRLQISRCPQLISLLRTVKIEDCNALESLPEAWMHNSNSSLESLKIRSCNSLVSFPD-FA  602 (763)
Q Consensus       524 ~~l~~l~~~~~~~p~~l~~L~~L~l~~~~~l~~~L~~L~l~~~~~l~~l~~~~~~~~l~~L~~L~l~~c~~l~~~~~-~~  602 (763)
                      ...        .+| ..++|+.|++++                +.++.++..    .+++|+.|++++|......|. +.
T Consensus        91 ~l~--------~l~-~~~~L~~L~L~~----------------N~l~~~~~~----~l~~L~~L~L~~N~l~~~~~~~~~  141 (487)
T 3oja_A           91 YVQ--------ELL-VGPSIETLHAAN----------------NNISRVSCS----RGQGKKNIYLANNKITMLRDLDEG  141 (487)
T ss_dssp             EEE--------EEE-ECTTCCEEECCS----------------SCCCCEEEC----CCSSCEEEECCSSCCCSGGGBCGG
T ss_pred             cCC--------CCC-CCCCcCEEECcC----------------CcCCCCCcc----ccCCCCEEECCCCCCCCCCchhhc
Confidence            533        222 114444444444                455555543    267788888877664333332 56


Q ss_pred             CCCCccEEEEccCCCCCCCchhhhcCCCCCcceEeeccCCCccccccccCCCCCcEEEEecCCCCCCCccceEEecCCCC
Q 039689          603 LPSQLRTVTIKGCDALESLPEAWMQNSSTSLESLAIDSCDSLTYIARIQLPPSLKRLIIFRCDNLRFNSLRKLKISGGCP  682 (763)
Q Consensus       603 ~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~L~~L~l~~c~~l~~~~L~~L~l~~~~~  682 (763)
                      .+++|++|++++|...+..|..+. ..+++|+.|++++| .++.++....+++|+.|++++|                  
T Consensus       142 ~l~~L~~L~Ls~N~l~~~~~~~l~-~~l~~L~~L~Ls~N-~l~~~~~~~~l~~L~~L~Ls~N------------------  201 (487)
T 3oja_A          142 CRSRVQYLDLKLNEIDTVNFAELA-ASSDTLEHLNLQYN-FIYDVKGQVVFAKLKTLDLSSN------------------  201 (487)
T ss_dssp             GGSSEEEEECTTSCCCEEEGGGGG-GGTTTCCEEECTTS-CCCEEECCCCCTTCCEEECCSS------------------
T ss_pred             CCCCCCEEECCCCCCCCcChHHHh-hhCCcccEEecCCC-ccccccccccCCCCCEEECCCC------------------
Confidence            677888888888854444454442 36788888888887 5666654444444554444333                  


Q ss_pred             CccccCC---CCCCcCeEeeccCCCCccccCCCCCCCCcCceecccCCC
Q 039689          683 DLVSSPR---FPASLTELKISDMPSLERLSSIGENLTSLKFLDLDNCPK  728 (763)
Q Consensus       683 ~l~~~~~---~~~~L~~L~l~~~~~l~~ip~~~~~l~~L~~L~l~~c~~  728 (763)
                      .+..+|.   .+++|+.|++++ +.++.+|..+..+++|+.|++++|+-
T Consensus       202 ~l~~~~~~~~~l~~L~~L~Ls~-N~l~~lp~~l~~l~~L~~L~l~~N~l  249 (487)
T 3oja_A          202 KLAFMGPEFQSAAGVTWISLRN-NKLVLIEKALRFSQNLEHFDLRGNGF  249 (487)
T ss_dssp             CCCEECGGGGGGTTCSEEECTT-SCCCEECTTCCCCTTCCEEECTTCCB
T ss_pred             CCCCCCHhHcCCCCccEEEecC-CcCcccchhhccCCCCCEEEcCCCCC
Confidence            2333332   345777777777 56667777777777777777777653

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=99.51  E-value=4.4e-13  Score=140.21  Aligned_cols=237  Identities=16%  Similarity=0.145  Sum_probs=130.6

Q ss_pred             eEEEeeeCCCCCCCccCCCCCCCceEEEEeccCCCCCCC--CCCCCCCCCcceecccCCceEeCccccCCCcCCCCCCcc
Q 039689          353 ELTITGYGGTKFPIWLGDSLFSKLMLLKFDNCGTCTSLP--SVGQLPFLKDPVISGMGRVKIVGSEFYGSSCSVSFPSLE  430 (763)
Q Consensus       353 ~L~~~~~~~~~~p~~~~~~~~~~L~~L~l~~~~~~~~l~--~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~f~~L~  430 (763)
                      .+...+...+.+|..+    ++++++|+|++|. ++.+|  .|+++++|++|+|++|...+.++...+     ..++++.
T Consensus        13 ~v~C~~~~Lt~iP~~l----~~~l~~L~Ls~N~-i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f-----~~L~~l~   82 (350)
T 4ay9_X           13 VFLCQESKVTEIPSDL----PRNAIELRFVLTK-LRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVF-----SNLPKLH   82 (350)
T ss_dssp             EEEEESTTCCSCCTTC----CTTCSEEEEESCC-CSEECTTSSTTCTTCCEEEEECCTTCCEECTTSB-----CSCTTCC
T ss_pred             EEEecCCCCCccCcCc----CCCCCEEEccCCc-CCCcCHHHHcCCCCCCEEECcCCCCCCccChhHh-----hcchhhh
Confidence            3455566677788765    4789999999985 45565  588999999999999877665543211     1134444


Q ss_pred             eeeccccchhhhcCCCCcCCcccEEEEecCcchhhcCCCCCcccEEEEecCCcccccCCCccccceeccccchhhhhhcC
Q 039689          431 TLFFVDICSKLQGTLPERLLLLEKLNIFRCEQLLVTLQCLPALRELEIDGCKGVVLSSPTDLSSLKLVHSRDMAKEVFEQ  510 (763)
Q Consensus       431 ~L~l~~~~~~l~~~~~~~~~~L~~L~l~~~~~l~~~l~~l~~L~~L~l~~~~~~~~~~~~~L~~L~~~~~~~~~~~~~~~  510 (763)
                      ++.+.+ ++++....                  +..+..+++|++|++++|.....+....                  .
T Consensus        83 ~~l~~~-~N~l~~l~------------------~~~f~~l~~L~~L~l~~n~l~~~~~~~~------------------~  125 (350)
T 4ay9_X           83 EIRIEK-ANNLLYIN------------------PEAFQNLPNLQYLLISNTGIKHLPDVHK------------------I  125 (350)
T ss_dssp             EEEEEE-ETTCCEEC------------------TTSBCCCTTCCEEEEEEECCSSCCCCTT------------------C
T ss_pred             hhhccc-CCcccccC------------------chhhhhccccccccccccccccCCchhh------------------c
Confidence            433332 13332111                  1245667778888887776544332111                  1


Q ss_pred             CCCCCceEEEeccCCccccccccCcCCccccccCceeeccCCchhhhcceeeeccCCCcccccchhhhcCCCCcceEEEe
Q 039689          511 GLPKLERLEIQHVREQTYLWRSETRLPQDIRSLNRLQISRCPQLISLLRTVKIEDCNALESLPEAWMHNSNSSLESLKIR  590 (763)
Q Consensus       511 ~~~~L~~L~l~~~~~l~~l~~~~~~~p~~l~~L~~L~l~~~~~l~~~L~~L~l~~~~~l~~l~~~~~~~~l~~L~~L~l~  590 (763)
                      ...++..+++.++..+..+...  .+......++.               |++++ +.++.++...+.  ..+|++|++.
T Consensus       126 ~~~~l~~l~l~~~~~i~~l~~~--~f~~~~~~l~~---------------L~L~~-N~i~~i~~~~f~--~~~L~~l~l~  185 (350)
T 4ay9_X          126 HSLQKVLLDIQDNINIHTIERN--SFVGLSFESVI---------------LWLNK-NGIQEIHNSAFN--GTQLDELNLS  185 (350)
T ss_dssp             CBSSCEEEEEESCTTCCEECTT--SSTTSBSSCEE---------------EECCS-SCCCEECTTSST--TEEEEEEECT
T ss_pred             ccchhhhhhhcccccccccccc--chhhcchhhhh---------------hcccc-ccccCCChhhcc--ccchhHHhhc
Confidence            2334555555555444321111  11111112333               33333 556666655433  4566677776


Q ss_pred             cCccccccCC--CCCCCCccEEEEccCCCCCCCchhhhcCCCCCcceEeeccCCCccccccccCCCCCcEEEE
Q 039689          591 SCNSLVSFPD--FALPSQLRTVTIKGCDALESLPEAWMQNSSTSLESLAIDSCDSLTYIARIQLPPSLKRLII  661 (763)
Q Consensus       591 ~c~~l~~~~~--~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~L~~L~l  661 (763)
                      +++.++.+|.  +..+++|++|++++| .++.+|.    ..+.+|+.|.+.++..++.+|...-.++|+.+++
T Consensus       186 ~~n~l~~i~~~~f~~l~~L~~LdLs~N-~l~~lp~----~~~~~L~~L~~l~~~~l~~lP~l~~l~~L~~l~l  253 (350)
T 4ay9_X          186 DNNNLEELPNDVFHGASGPVILDISRT-RIHSLPS----YGLENLKKLRARSTYNLKKLPTLEKLVALMEASL  253 (350)
T ss_dssp             TCTTCCCCCTTTTTTEECCSEEECTTS-CCCCCCS----SSCTTCCEEECTTCTTCCCCCCTTTCCSCCEEEC
T ss_pred             cCCcccCCCHHHhccCcccchhhcCCC-CcCccCh----hhhccchHhhhccCCCcCcCCCchhCcChhhCcC
Confidence            6666666664  455667777777766 5566665    3355666666666666666664333344444444

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=99.51  E-value=4.2e-13  Score=140.31  Aligned_cols=220  Identities=19%  Similarity=0.163  Sum_probs=148.5

Q ss_pred             CCcccEEEEecCCcccccCCCccccceeccccchhhhhhcCCCCCCceEEEeccCCccccccccCcCC-ccccccCceee
Q 039689          470 LPALRELEIDGCKGVVLSSPTDLSSLKLVHSRDMAKEVFEQGLPKLERLEIQHVREQTYLWRSETRLP-QDIRSLNRLQI  548 (763)
Q Consensus       470 l~~L~~L~l~~~~~~~~~~~~~L~~L~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~p-~~l~~L~~L~l  548 (763)
                      .+++++|++++|....++                  ...+..+++|++|++++|..++       .+| ..+.+|..   
T Consensus        29 ~~~l~~L~Ls~N~i~~i~------------------~~~f~~l~~L~~L~Ls~N~i~~-------~i~~~~f~~L~~---   80 (350)
T 4ay9_X           29 PRNAIELRFVLTKLRVIQ------------------KGAFSGFGDLEKIEISQNDVLE-------VIEADVFSNLPK---   80 (350)
T ss_dssp             CTTCSEEEEESCCCSEEC------------------TTSSTTCTTCCEEEEECCTTCC-------EECTTSBCSCTT---
T ss_pred             CCCCCEEEccCCcCCCcC------------------HHHHcCCCCCCEEECcCCCCCC-------ccChhHhhcchh---
Confidence            357999999998755432                  1233678899999999998765       233 22333332   


Q ss_pred             ccCCchhhhcceeeeccCCCcccccchhhhcCCCCcceEEEecCccccccCCC--CCCCCccEEEEccCCCCCCCchhhh
Q 039689          549 SRCPQLISLLRTVKIEDCNALESLPEAWMHNSNSSLESLKIRSCNSLVSFPDF--ALPSQLRTVTIKGCDALESLPEAWM  626 (763)
Q Consensus       549 ~~~~~l~~~L~~L~l~~~~~l~~l~~~~~~~~l~~L~~L~l~~c~~l~~~~~~--~~~~~L~~L~l~~~~~l~~~~~~~~  626 (763)
                               +.++...+++.++.+++..+. .+++|++|++++|. +..+|..  ....++..+++.++..+..++...+
T Consensus        81 ---------l~~~l~~~~N~l~~l~~~~f~-~l~~L~~L~l~~n~-l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f  149 (350)
T 4ay9_X           81 ---------LHEIRIEKANNLLYINPEAFQ-NLPNLQYLLISNTG-IKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSF  149 (350)
T ss_dssp             ---------CCEEEEEEETTCCEECTTSBC-CCTTCCEEEEEEEC-CSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSS
T ss_pred             ---------hhhhhcccCCcccccCchhhh-hccccccccccccc-cccCCchhhcccchhhhhhhccccccccccccch
Confidence                     333344444778888766433 48899999997765 5666653  3345677888888778888876554


Q ss_pred             cCCCCCcceEeeccCCCccccccccCCCCCcEEEEecCCCCCCCccceEEecCCCCCccccCC----CCCCcCeEeeccC
Q 039689          627 QNSSTSLESLAIDSCDSLTYIARIQLPPSLKRLIIFRCDNLRFNSLRKLKISGGCPDLVSSPR----FPASLTELKISDM  702 (763)
Q Consensus       627 ~~~l~~L~~L~l~~c~~l~~l~~~~~~~~L~~L~l~~c~~l~~~~L~~L~l~~~~~~l~~~~~----~~~~L~~L~l~~~  702 (763)
                      ......++.|++++| .++.++...+.               ..+|+.+.+++ ++.+..+|.    .+++|++|++++ 
T Consensus       150 ~~~~~~l~~L~L~~N-~i~~i~~~~f~---------------~~~L~~l~l~~-~n~l~~i~~~~f~~l~~L~~LdLs~-  211 (350)
T 4ay9_X          150 VGLSFESVILWLNKN-GIQEIHNSAFN---------------GTQLDELNLSD-NNNLEELPNDVFHGASGPVILDISR-  211 (350)
T ss_dssp             TTSBSSCEEEECCSS-CCCEECTTSST---------------TEEEEEEECTT-CTTCCCCCTTTTTTEECCSEEECTT-
T ss_pred             hhcchhhhhhccccc-cccCCChhhcc---------------ccchhHHhhcc-CCcccCCCHHHhccCcccchhhcCC-
Confidence            344457888999987 77777766542               34566666665 666767665    456788888888 


Q ss_pred             CCCccccCCCCCCCCcCceecccCCCCccccCCCcccccceeeecc
Q 039689          703 PSLERLSSIGENLTSLKFLDLDNCPKLKYFSKQGLPKSLLRLIIDE  748 (763)
Q Consensus       703 ~~l~~ip~~~~~l~~L~~L~l~~c~~L~~l~~~~~~~~L~~L~i~~  748 (763)
                      +.++.+|..  .+.+|+.|.+.+|++++.+|.....++|+.+++.+
T Consensus       212 N~l~~lp~~--~~~~L~~L~~l~~~~l~~lP~l~~l~~L~~l~l~~  255 (350)
T 4ay9_X          212 TRIHSLPSY--GLENLKKLRARSTYNLKKLPTLEKLVALMEASLTY  255 (350)
T ss_dssp             SCCCCCCSS--SCTTCCEEECTTCTTCCCCCCTTTCCSCCEEECSC
T ss_pred             CCcCccChh--hhccchHhhhccCCCcCcCCCchhCcChhhCcCCC
Confidence            578888753  46777777777778888887654556788877753

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=99.50  E-value=4.7e-14  Score=143.20  Aligned_cols=100  Identities=23%  Similarity=0.329  Sum_probs=79.4

Q ss_pred             CCCCcccEEEecCCCCCccCcccCCCCcccEEecCCCCchhcchhhhhcccccEEeeccccccccccccccCcccccccc
Q 039689          194 LNLPRLRVFSLRGYNIFELPKAIENLKHLRFLDLSTTKIEILRESINTLYNLHTLLLEDCRRLKKLCKDMGNLTKLHHLN  273 (763)
Q Consensus       194 ~~l~~Lr~L~L~~~~i~~lp~~~~~l~~L~~L~L~~~~i~~lp~~~~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~  273 (763)
                      ..+++|++|++++|.+..++. +..+++|++|++++|.++.++. ++++++|++|++++ +.+..+|. ++.+++|++|+
T Consensus        43 ~~l~~L~~L~l~~~~i~~~~~-~~~l~~L~~L~L~~n~l~~~~~-l~~l~~L~~L~l~~-n~l~~~~~-l~~l~~L~~L~  118 (291)
T 1h6t_A           43 NELNSIDQIIANNSDIKSVQG-IQYLPNVTKLFLNGNKLTDIKP-LANLKNLGWLFLDE-NKVKDLSS-LKDLKKLKSLS  118 (291)
T ss_dssp             HHHHTCCEEECTTSCCCCCTT-GGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCS-SCCCCGGG-GTTCTTCCEEE
T ss_pred             hhcCcccEEEccCCCcccChh-HhcCCCCCEEEccCCccCCCcc-cccCCCCCEEECCC-CcCCCChh-hccCCCCCEEE
Confidence            456788999999999888864 8889999999999999998877 89999999999998 46777765 89999999999


Q ss_pred             cCCcccccccccCCCccCCCceeeec
Q 039689          274 NSNVGSLEEMLMLKSLVHLQGTLEIS  299 (763)
Q Consensus       274 l~~~~~l~~l~~l~~L~~L~~~L~~~  299 (763)
                      +++|. +..++.+..+++|+ .|.+.
T Consensus       119 L~~n~-i~~~~~l~~l~~L~-~L~l~  142 (291)
T 1h6t_A          119 LEHNG-ISDINGLVHLPQLE-SLYLG  142 (291)
T ss_dssp             CTTSC-CCCCGGGGGCTTCC-EEECC
T ss_pred             CCCCc-CCCChhhcCCCCCC-EEEcc
Confidence            99987 66555555555555 44443

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=99.49  E-value=7.3e-14  Score=143.58  Aligned_cols=133  Identities=14%  Similarity=0.080  Sum_probs=91.2

Q ss_pred             CCcccEEEecCCCCCcc-Cccc--CCCCcccEEecCCCCchhc-c----hhhhhcccccEEeecccccccccc-ccccCc
Q 039689          196 LPRLRVFSLRGYNIFEL-PKAI--ENLKHLRFLDLSTTKIEIL-R----ESINTLYNLHTLLLEDCRRLKKLC-KDMGNL  266 (763)
Q Consensus       196 l~~Lr~L~L~~~~i~~l-p~~~--~~l~~L~~L~L~~~~i~~l-p----~~~~~L~~L~~L~L~~~~~l~~lp-~~i~~L  266 (763)
                      +++|++|++++|.+... |..+  ..+++|++|+|++|.++.. |    ..+..+++|++|++++| .+..+| ..++.+
T Consensus        90 ~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n-~l~~~~~~~~~~l  168 (310)
T 4glp_A           90 YSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQA-HSPAFSCEQVRAF  168 (310)
T ss_dssp             HSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECC-SSCCCCTTSCCCC
T ss_pred             cCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCC-CcchhhHHHhccC
Confidence            45699999999998754 6777  8999999999999998852 2    34567999999999995 455554 669999


Q ss_pred             ccccccccCCcccccc---ccc---CCCccCCCceeeecCcccccCcccchhhhhcCcccccceEEeeccCC
Q 039689          267 TKLHHLNNSNVGSLEE---MLM---LKSLVHLQGTLEISRLENVKGVGDASEVQLNSKVNLKALYLQWGVRD  332 (763)
Q Consensus       267 ~~L~~L~l~~~~~l~~---l~~---l~~L~~L~~~L~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~  332 (763)
                      ++|++|++++|. +..   ++.   +..+++|+ .|.+.+.. +..........+..+++|+.|++++|...
T Consensus       169 ~~L~~L~Ls~N~-l~~~~~~~~~~~~~~l~~L~-~L~Ls~N~-l~~l~~~~~~l~~~l~~L~~L~Ls~N~l~  237 (310)
T 4glp_A          169 PALTSLDLSDNP-GLGERGLMAALCPHKFPAIQ-NLALRNTG-METPTGVCAALAAAGVQPHSLDLSHNSLR  237 (310)
T ss_dssp             TTCCEEECCSCT-TCHHHHHHTTSCTTSSCCCC-SCBCCSSC-CCCHHHHHHHHHHHTCCCSSEECTTSCCC
T ss_pred             CCCCEEECCCCC-CccchhhhHHHhhhcCCCCC-EEECCCCC-CCchHHHHHHHHhcCCCCCEEECCCCCCC
Confidence            999999999997 322   211   24555565 55554421 11112222223456677888888776443

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=99.49  E-value=9e-14  Score=142.45  Aligned_cols=172  Identities=19%  Similarity=0.235  Sum_probs=138.3

Q ss_pred             ccCCCCcccEEEecCCCCCccCcccCCCCcccEEecCCCCchhcchhhhhcccccEEeeccccccccccccccCcccccc
Q 039689          192 RLLNLPRLRVFSLRGYNIFELPKAIENLKHLRFLDLSTTKIEILRESINTLYNLHTLLLEDCRRLKKLCKDMGNLTKLHH  271 (763)
Q Consensus       192 ~~~~l~~Lr~L~L~~~~i~~lp~~~~~l~~L~~L~L~~~~i~~lp~~~~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~  271 (763)
                      .+..+++|++|++++|.+..++. +..+++|++|+|++|.++.+| .++.+++|++|++++| .+..+|. ++.+++|++
T Consensus        58 ~~~~l~~L~~L~L~~n~i~~~~~-~~~l~~L~~L~L~~n~l~~~~-~~~~l~~L~~L~l~~n-~l~~~~~-l~~l~~L~~  133 (308)
T 1h6u_A           58 GVQYLNNLIGLELKDNQITDLAP-LKNLTKITELELSGNPLKNVS-AIAGLQSIKTLDLTST-QITDVTP-LAGLSNLQV  133 (308)
T ss_dssp             TGGGCTTCCEEECCSSCCCCCGG-GTTCCSCCEEECCSCCCSCCG-GGTTCTTCCEEECTTS-CCCCCGG-GTTCTTCCE
T ss_pred             hhhccCCCCEEEccCCcCCCChh-HccCCCCCEEEccCCcCCCch-hhcCCCCCCEEECCCC-CCCCchh-hcCCCCCCE
Confidence            46789999999999999999977 999999999999999999886 7999999999999994 6788876 999999999


Q ss_pred             cccCCcccccccccCCCccCCCceeeecCcccccCcccchhhhhcCcccccceEEeeccCCCCCCccHHHHhhcCCCCCC
Q 039689          272 LNNSNVGSLEEMLMLKSLVHLQGTLEISRLENVKGVGDASEVQLNSKVNLKALYLQWGVRDAVEPKTETQVIDMLKPHQK  351 (763)
Q Consensus       272 L~l~~~~~l~~l~~l~~L~~L~~~L~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~l~~l~~  351 (763)
                      |++++|. +..++.+..+++|+ .|.+.+..    +....  .+..+++|+.|++++|...                   
T Consensus       134 L~l~~n~-l~~~~~l~~l~~L~-~L~l~~n~----l~~~~--~l~~l~~L~~L~l~~n~l~-------------------  186 (308)
T 1h6u_A          134 LYLDLNQ-ITNISPLAGLTNLQ-YLSIGNAQ----VSDLT--PLANLSKLTTLKADDNKIS-------------------  186 (308)
T ss_dssp             EECCSSC-CCCCGGGGGCTTCC-EEECCSSC----CCCCG--GGTTCTTCCEEECCSSCCC-------------------
T ss_pred             EECCCCc-cCcCccccCCCCcc-EEEccCCc----CCCCh--hhcCCCCCCEEECCCCccC-------------------
Confidence            9999998 88888888889998 88887642    22222  2778889999988776432                   


Q ss_pred             ceEEEeeeCCCCCCCccCCCCCCCceEEEEeccCCCCCCCCCCCCCCCCcceecccCC
Q 039689          352 LELTITGYGGTKFPIWLGDSLFSKLMLLKFDNCGTCTSLPSVGQLPFLKDPVISGMGR  409 (763)
Q Consensus       352 L~L~~~~~~~~~~p~~~~~~~~~~L~~L~l~~~~~~~~l~~l~~l~~L~~L~l~~~~~  409 (763)
                                 .++. +..  +++|+.|++++|.. ..++++..+++|+.|+++++..
T Consensus       187 -----------~~~~-l~~--l~~L~~L~L~~N~l-~~~~~l~~l~~L~~L~l~~N~i  229 (308)
T 1h6u_A          187 -----------DISP-LAS--LPNLIEVHLKNNQI-SDVSPLANTSNLFIVTLTNQTI  229 (308)
T ss_dssp             -----------CCGG-GGG--CTTCCEEECTTSCC-CBCGGGTTCTTCCEEEEEEEEE
T ss_pred             -----------cChh-hcC--CCCCCEEEccCCcc-CccccccCCCCCCEEEccCCee
Confidence                       2222 222  68888888888854 4555678888899999888653

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=99.46  E-value=4.3e-13  Score=133.15  Aligned_cols=78  Identities=24%  Similarity=0.284  Sum_probs=45.9

Q ss_pred             cccEEEecCCCCCccCcccCCCCcccEEecCCCCchhcc-hhhhhcccccEEeeccccccccccc-cccCcccccccccC
Q 039689          198 RLRVFSLRGYNIFELPKAIENLKHLRFLDLSTTKIEILR-ESINTLYNLHTLLLEDCRRLKKLCK-DMGNLTKLHHLNNS  275 (763)
Q Consensus       198 ~Lr~L~L~~~~i~~lp~~~~~l~~L~~L~L~~~~i~~lp-~~~~~L~~L~~L~L~~~~~l~~lp~-~i~~L~~L~~L~l~  275 (763)
                      ..++++++++.++.+|..+.  .+|++|+|++|.++.++ ..|+++++|++|++++| .+..++. .+..+++|++|+++
T Consensus        15 ~~~~l~~~~~~l~~~p~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~   91 (251)
T 3m19_A           15 GKKEVDCQGKSLDSVPSGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYN-QLQTLSAGVFDDLTELGTLGLA   91 (251)
T ss_dssp             GGTEEECTTCCCSSCCSCCC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTS-CCCCCCTTTTTTCTTCCEEECT
T ss_pred             CCeEEecCCCCccccCCCCC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCC-cCCccCHhHhccCCcCCEEECC
Confidence            34556666666666665544  46666666666666553 34566666666666663 4444433 35666666666666


Q ss_pred             Ccc
Q 039689          276 NVG  278 (763)
Q Consensus       276 ~~~  278 (763)
                      +|.
T Consensus        92 ~n~   94 (251)
T 3m19_A           92 NNQ   94 (251)
T ss_dssp             TSC
T ss_pred             CCc
Confidence            665

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=99.46  E-value=1.4e-13  Score=131.09  Aligned_cols=152  Identities=17%  Similarity=0.198  Sum_probs=107.6

Q ss_pred             CCCCcccEEEecCCCCCccCcccCCCCcccEEecCCCCchhcchhhhhcccccEEeeccccccccccccccCcccccccc
Q 039689          194 LNLPRLRVFSLRGYNIFELPKAIENLKHLRFLDLSTTKIEILRESINTLYNLHTLLLEDCRRLKKLCKDMGNLTKLHHLN  273 (763)
Q Consensus       194 ~~l~~Lr~L~L~~~~i~~lp~~~~~l~~L~~L~L~~~~i~~lp~~~~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~  273 (763)
                      ..+++|+.|++++|.++.+| .+..+++|++|++++|.++.++ .+..+++|++|++++|......|..++.+++|++|+
T Consensus        41 ~~l~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~l~~n~~~~~~-~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~  118 (197)
T 4ezg_A           41 AQMNSLTYITLANINVTDLT-GIEYAHNIKDLTINNIHATNYN-PISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLD  118 (197)
T ss_dssp             HHHHTCCEEEEESSCCSCCT-TGGGCTTCSEEEEESCCCSCCG-GGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEEE
T ss_pred             hhcCCccEEeccCCCccChH-HHhcCCCCCEEEccCCCCCcch-hhhcCCCCCEEEeECCccCcccChhhcCCCCCCEEE
Confidence            44678999999999999888 7999999999999999887765 789999999999999644445788899999999999


Q ss_pred             cCCcccccccccCCCccCCCceeeecCcccccCcccchhhhhcCcccccceEEeeccCCCCCCccHHHHhhcCCCCCCce
Q 039689          274 NSNVGSLEEMLMLKSLVHLQGTLEISRLENVKGVGDASEVQLNSKVNLKALYLQWGVRDAVEPKTETQVIDMLKPHQKLE  353 (763)
Q Consensus       274 l~~~~~l~~l~~l~~L~~L~~~L~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~l~~l~~L~  353 (763)
                      +++|. +..                           .....+..+++|+.|++++|..                      
T Consensus       119 Ls~n~-i~~---------------------------~~~~~l~~l~~L~~L~L~~n~~----------------------  148 (197)
T 4ezg_A          119 ISHSA-HDD---------------------------SILTKINTLPKVNSIDLSYNGA----------------------  148 (197)
T ss_dssp             CCSSB-CBG---------------------------GGHHHHTTCSSCCEEECCSCTB----------------------
T ss_pred             ecCCc-cCc---------------------------HhHHHHhhCCCCCEEEccCCCC----------------------
Confidence            99987 332                           1123344555666666655420                      


Q ss_pred             EEEeeeCCCCCCCccCCCCCCCceEEEEeccCCCCCCCCCCCCCCCCcceecccC
Q 039689          354 LTITGYGGTKFPIWLGDSLFSKLMLLKFDNCGTCTSLPSVGQLPFLKDPVISGMG  408 (763)
Q Consensus       354 L~~~~~~~~~~p~~~~~~~~~~L~~L~l~~~~~~~~l~~l~~l~~L~~L~l~~~~  408 (763)
                             ...+| .+..  +++|+.|++++|. +..++.+..+++|++|+++++.
T Consensus       149 -------i~~~~-~l~~--l~~L~~L~l~~n~-i~~~~~l~~l~~L~~L~l~~N~  192 (197)
T 4ezg_A          149 -------ITDIM-PLKT--LPELKSLNIQFDG-VHDYRGIEDFPKLNQLYAFSQT  192 (197)
T ss_dssp             -------CCCCG-GGGG--CSSCCEEECTTBC-CCCCTTGGGCSSCCEEEECBC-
T ss_pred             -------ccccH-hhcC--CCCCCEEECCCCC-CcChHHhccCCCCCEEEeeCcc
Confidence                   11122 1222  5677777777774 3345566666777777776643

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=99.45  E-value=1.8e-13  Score=137.57  Aligned_cols=177  Identities=21%  Similarity=0.274  Sum_probs=135.8

Q ss_pred             hccCCCCcccEEEecCCCCCccCcccCCCCcccEEecCCCCchhcchh-hhhcccccEEeecccccccccccc-ccCccc
Q 039689          191 QRLLNLPRLRVFSLRGYNIFELPKAIENLKHLRFLDLSTTKIEILRES-INTLYNLHTLLLEDCRRLKKLCKD-MGNLTK  268 (763)
Q Consensus       191 ~~~~~l~~Lr~L~L~~~~i~~lp~~~~~l~~L~~L~L~~~~i~~lp~~-~~~L~~L~~L~L~~~~~l~~lp~~-i~~L~~  268 (763)
                      +.+..+++|++|++++|.+..++ .+..+++|++|++++|.++.+|.. ++.+++|++|++++| .+..+|.. ++.+++
T Consensus        57 ~~l~~l~~L~~L~l~~n~l~~~~-~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~  134 (272)
T 3rfs_A           57 QGIQYLPNVRYLALGGNKLHDIS-ALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVEN-QLQSLPDGVFDKLTN  134 (272)
T ss_dssp             TTGGGCTTCCEEECTTSCCCCCG-GGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTS-CCCCCCTTTTTTCTT
T ss_pred             cccccCCCCcEEECCCCCCCCch-hhcCCCCCCEEECCCCccCccChhHhcCCcCCCEEECCCC-cCCccCHHHhccCCC
Confidence            34677999999999999998874 789999999999999999988654 699999999999995 66677665 799999


Q ss_pred             ccccccCCccccccccc--CCCccCCCceeeecCcccccCcccchhhhhcCcccccceEEeeccCCCCCCccHHHHhhcC
Q 039689          269 LHHLNNSNVGSLEEMLM--LKSLVHLQGTLEISRLENVKGVGDASEVQLNSKVNLKALYLQWGVRDAVEPKTETQVIDML  346 (763)
Q Consensus       269 L~~L~l~~~~~l~~l~~--l~~L~~L~~~L~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~l  346 (763)
                      |++|++++|. +..++.  +..+++|+ .+.+.+.    .+.......+..+++|+.|+++.|..               
T Consensus       135 L~~L~L~~n~-l~~~~~~~~~~l~~L~-~L~l~~n----~l~~~~~~~~~~l~~L~~L~L~~N~l---------------  193 (272)
T 3rfs_A          135 LTYLNLAHNQ-LQSLPKGVFDKLTNLT-ELDLSYN----QLQSLPEGVFDKLTQLKDLRLYQNQL---------------  193 (272)
T ss_dssp             CCEEECCSSC-CCCCCTTTTTTCTTCC-EEECCSS----CCCCCCTTTTTTCTTCCEEECCSSCC---------------
T ss_pred             CCEEECCCCc-cCccCHHHhccCccCC-EEECCCC----CcCccCHHHhcCCccCCEEECCCCcC---------------
Confidence            9999999997 877776  67888898 8888764    23334444567788888888876632               


Q ss_pred             CCCCCceEEEeeeCCCCCCC-ccCCCCCCCceEEEEeccCCCCCCCCCCCCCCCCcceecccCCceEe
Q 039689          347 KPHQKLELTITGYGGTKFPI-WLGDSLFSKLMLLKFDNCGTCTSLPSVGQLPFLKDPVISGMGRVKIV  413 (763)
Q Consensus       347 ~~l~~L~L~~~~~~~~~~p~-~~~~~~~~~L~~L~l~~~~~~~~l~~l~~l~~L~~L~l~~~~~l~~~  413 (763)
                                     ..+|. .+..  +++|+.|++++|+..      +.+++|+.+++..+.....+
T Consensus       194 ---------------~~~~~~~~~~--l~~L~~L~l~~N~~~------~~~~~l~~l~~~~n~~~g~i  238 (272)
T 3rfs_A          194 ---------------KSVPDGVFDR--LTSLQYIWLHDNPWD------CTCPGIRYLSEWINKHSGVV  238 (272)
T ss_dssp             ---------------SCCCTTTTTT--CTTCCEEECCSSCBC------CCTTTTHHHHHHHHHTGGGB
T ss_pred             ---------------CccCHHHHhC--CcCCCEEEccCCCcc------ccCcHHHHHHHHHHhCCCcc
Confidence                           22332 2343  789999999998543      44667888887765544333

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=99.42  E-value=2.4e-13  Score=151.49  Aligned_cols=169  Identities=21%  Similarity=0.249  Sum_probs=117.7

Q ss_pred             CCCCcccEEEecCCCCCccCcccCCCCcccEEecCCCCchhcchhhhhcccccEEeeccccccccccccccCcccccccc
Q 039689          194 LNLPRLRVFSLRGYNIFELPKAIENLKHLRFLDLSTTKIEILRESINTLYNLHTLLLEDCRRLKKLCKDMGNLTKLHHLN  273 (763)
Q Consensus       194 ~~l~~Lr~L~L~~~~i~~lp~~~~~l~~L~~L~L~~~~i~~lp~~~~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~  273 (763)
                      ..+++|+.|++++|.+..+| .+..+++|++|+|++|.++.+|+ +..+++|+.|+|++| .+..+| .++.+++|++|+
T Consensus        40 ~~L~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N-~l~~l~-~l~~l~~L~~L~  115 (605)
T 1m9s_A           40 NELNSIDQIIANNSDIKSVQ-GIQYLPNVTKLFLNGNKLTDIKP-LTNLKNLGWLFLDEN-KIKDLS-SLKDLKKLKSLS  115 (605)
T ss_dssp             HHHTTCCCCBCTTCCCCCCT-TGGGCTTCCEEECTTSCCCCCGG-GGGCTTCCEEECCSS-CCCCCT-TSTTCTTCCEEE
T ss_pred             hcCCCCCEEECcCCCCCCCh-HHccCCCCCEEEeeCCCCCCChh-hccCCCCCEEECcCC-CCCCCh-hhccCCCCCEEE
Confidence            45678888899999888886 58889999999999999888876 889999999999984 677766 588899999999


Q ss_pred             cCCcccccccccCCCccCCCceeeecCcccccCcccchhhhhcCcccccceEEeeccCCCCCCccHHHHhhcCCCCCCce
Q 039689          274 NSNVGSLEEMLMLKSLVHLQGTLEISRLENVKGVGDASEVQLNSKVNLKALYLQWGVRDAVEPKTETQVIDMLKPHQKLE  353 (763)
Q Consensus       274 l~~~~~l~~l~~l~~L~~L~~~L~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~l~~l~~L~  353 (763)
                      +++|. +..++.+..+++|+ .|.+.+..    +...  ..+..+++|+.|+++.|..                      
T Consensus       116 Ls~N~-l~~l~~l~~l~~L~-~L~Ls~N~----l~~l--~~l~~l~~L~~L~Ls~N~l----------------------  165 (605)
T 1m9s_A          116 LEHNG-ISDINGLVHLPQLE-SLYLGNNK----ITDI--TVLSRLTKLDTLSLEDNQI----------------------  165 (605)
T ss_dssp             CTTSC-CCCCGGGGGCTTCS-EEECCSSC----CCCC--GGGGSCTTCSEEECCSSCC----------------------
T ss_pred             ecCCC-CCCCccccCCCccC-EEECCCCc----cCCc--hhhcccCCCCEEECcCCcC----------------------
Confidence            99887 76676666667776 66665431    1111  3455666666666655532                      


Q ss_pred             EEEeeeCCCCCCCccCCCCCCCceEEEEeccCCCCCCCCCCCCCCCCcceecccC
Q 039689          354 LTITGYGGTKFPIWLGDSLFSKLMLLKFDNCGTCTSLPSVGQLPFLKDPVISGMG  408 (763)
Q Consensus       354 L~~~~~~~~~~p~~~~~~~~~~L~~L~l~~~~~~~~l~~l~~l~~L~~L~l~~~~  408 (763)
                              ..+++ +..  +++|+.|+|++|. +..++.+..+++|+.|++++|.
T Consensus       166 --------~~~~~-l~~--l~~L~~L~Ls~N~-i~~l~~l~~l~~L~~L~L~~N~  208 (605)
T 1m9s_A          166 --------SDIVP-LAG--LTKLQNLYLSKNH-ISDLRALAGLKNLDVLELFSQE  208 (605)
T ss_dssp             --------CCCGG-GTT--CTTCCEEECCSSC-CCBCGGGTTCTTCSEEECCSEE
T ss_pred             --------CCchh-hcc--CCCCCEEECcCCC-CCCChHHccCCCCCEEEccCCc
Confidence                    22222 222  5667777776664 3345566666677777766654

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=99.40  E-value=1.6e-12  Score=133.49  Aligned_cols=198  Identities=16%  Similarity=0.181  Sum_probs=124.1

Q ss_pred             CCCCceEEEeccCCccccccccCcCC-----ccccccCceeeccCCchhhhcceeeeccCCCccc-ccc--hhhhcCCCC
Q 039689          512 LPKLERLEIQHVREQTYLWRSETRLP-----QDIRSLNRLQISRCPQLISLLRTVKIEDCNALES-LPE--AWMHNSNSS  583 (763)
Q Consensus       512 ~~~L~~L~l~~~~~l~~l~~~~~~~p-----~~l~~L~~L~l~~~~~l~~~L~~L~l~~~~~l~~-l~~--~~~~~~l~~  583 (763)
                      +++|++|++++|....       ..|     ..+++|+.|               ++++ +.++. .+.  ......+++
T Consensus        90 ~~~L~~L~l~~n~l~~-------~~~~~~~~~~~~~L~~L---------------~Ls~-n~i~~~~~~~~~~~~~~~~~  146 (310)
T 4glp_A           90 YSRLKELTLEDLKITG-------TMPPLPLEATGLALSSL---------------RLRN-VSWATGRSWLAELQQWLKPG  146 (310)
T ss_dssp             HSCCCEEEEESCCCBS-------CCCCCSSSCCCBCCSSC---------------EEES-CCCSSTTSSHHHHHTTBCSC
T ss_pred             cCceeEEEeeCCEecc-------chhhhhhhccCCCCCEE---------------Eeec-ccccchhhhhHHHHhhhccC
Confidence            4669999999987654       333     233444444               4444 33433 221  111124789


Q ss_pred             cceEEEecCccccccCC-CCCCCCccEEEEccCCCCCC--CchhhhcCCCCCcceEeeccCCCccccccccCCCCCcEEE
Q 039689          584 LESLKIRSCNSLVSFPD-FALPSQLRTVTIKGCDALES--LPEAWMQNSSTSLESLAIDSCDSLTYIARIQLPPSLKRLI  660 (763)
Q Consensus       584 L~~L~l~~c~~l~~~~~-~~~~~~L~~L~l~~~~~l~~--~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~L~~L~  660 (763)
                      |++|++++|......+. +..+++|++|++++|...+.  ++.......+++|++|++++| .++.++..... -+.   
T Consensus       147 L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N-~l~~l~~~~~~-l~~---  221 (310)
T 4glp_A          147 LKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNT-GMETPTGVCAA-LAA---  221 (310)
T ss_dssp             CCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSS-CCCCHHHHHHH-HHH---
T ss_pred             CCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCC-CCCchHHHHHH-HHh---
Confidence            99999988765333333 56788999999999865432  222221157889999999988 66655432100 000   


Q ss_pred             EecCCCCCCCccceEEecCCCCCcccc-CC------CCCCcCeEeeccCCCCccccCCCCCCCCcCceecccCCCCcccc
Q 039689          661 IFRCDNLRFNSLRKLKISGGCPDLVSS-PR------FPASLTELKISDMPSLERLSSIGENLTSLKFLDLDNCPKLKYFS  733 (763)
Q Consensus       661 l~~c~~l~~~~L~~L~l~~~~~~l~~~-~~------~~~~L~~L~l~~~~~l~~ip~~~~~l~~L~~L~l~~c~~L~~l~  733 (763)
                             .+++|+.|++++  +.+... |.      .+++|++|++++ +.++.+|..+.  ++|++|++++| +++.+|
T Consensus       222 -------~l~~L~~L~Ls~--N~l~~~~p~~~~~~~~~~~L~~L~Ls~-N~l~~lp~~~~--~~L~~L~Ls~N-~l~~~~  288 (310)
T 4glp_A          222 -------AGVQPHSLDLSH--NSLRATVNPSAPRCMWSSALNSLNLSF-AGLEQVPKGLP--AKLRVLDLSSN-RLNRAP  288 (310)
T ss_dssp             -------HTCCCSSEECTT--SCCCCCCCSCCSSCCCCTTCCCEECCS-SCCCSCCSCCC--SCCSCEECCSC-CCCSCC
T ss_pred             -------cCCCCCEEECCC--CCCCccchhhHHhccCcCcCCEEECCC-CCCCchhhhhc--CCCCEEECCCC-cCCCCc
Confidence                   124555555554  334333 22      236899999988 57888887654  79999999986 688876


Q ss_pred             CCCcccccceeeeccCh
Q 039689          734 KQGLPKSLLRLIIDECP  750 (763)
Q Consensus       734 ~~~~~~~L~~L~i~~C~  750 (763)
                      .....++|+.|++++++
T Consensus       289 ~~~~l~~L~~L~L~~N~  305 (310)
T 4glp_A          289 QPDELPEVDNLTLDGNP  305 (310)
T ss_dssp             CTTSCCCCSCEECSSTT
T ss_pred             hhhhCCCccEEECcCCC
Confidence            65555789999999886

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=99.38  E-value=5.6e-13  Score=132.95  Aligned_cols=86  Identities=26%  Similarity=0.255  Sum_probs=57.2

Q ss_pred             cCCCCcccEEEecCCCCCccCcccCCCCcccEEecCCCCchhcchhhhhcccccEEeeccccccccccccccCccccccc
Q 039689          193 LLNLPRLRVFSLRGYNIFELPKAIENLKHLRFLDLSTTKIEILRESINTLYNLHTLLLEDCRRLKKLCKDMGNLTKLHHL  272 (763)
Q Consensus       193 ~~~l~~Lr~L~L~~~~i~~lp~~~~~l~~L~~L~L~~~~i~~lp~~~~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L  272 (763)
                      +..+++|++|++++|.++.+| .+..+++|++|+|++|.++.+|. ++.+++|++|++++ +.+..+|.. .. ++|++|
T Consensus        37 ~~~l~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~L~~N~i~~~~~-l~~l~~L~~L~L~~-N~l~~l~~~-~~-~~L~~L  111 (263)
T 1xeu_A           37 QKELSGVQNFNGDNSNIQSLA-GMQFFTNLKELHLSHNQISDLSP-LKDLTKLEELSVNR-NRLKNLNGI-PS-ACLSRL  111 (263)
T ss_dssp             HHHHTTCSEEECTTSCCCCCT-TGGGCTTCCEEECCSSCCCCCGG-GTTCSSCCEEECCS-SCCSCCTTC-CC-SSCCEE
T ss_pred             hhhcCcCcEEECcCCCcccch-HHhhCCCCCEEECCCCccCCChh-hccCCCCCEEECCC-CccCCcCcc-cc-CcccEE
Confidence            345667777777777777666 56677777777777777777765 77777777777777 456666543 33 677777


Q ss_pred             ccCCcccccccc
Q 039689          273 NNSNVGSLEEML  284 (763)
Q Consensus       273 ~l~~~~~l~~l~  284 (763)
                      ++++|. +..++
T Consensus       112 ~L~~N~-l~~~~  122 (263)
T 1xeu_A          112 FLDNNE-LRDTD  122 (263)
T ss_dssp             ECCSSC-CSBSG
T ss_pred             EccCCc-cCCCh
Confidence            777775 44433

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=99.37  E-value=2.9e-12  Score=123.11  Aligned_cols=65  Identities=12%  Similarity=0.004  Sum_probs=38.1

Q ss_pred             CCCceEEEEeccCCCCCCC-CCCCCCCCCcceecccCCceEeCccccCCCcCCCCCCcceeeccccchhhhcCCCCcCCc
Q 039689          373 FSKLMLLKFDNCGTCTSLP-SVGQLPFLKDPVISGMGRVKIVGSEFYGSSCSVSFPSLETLFFVDICSKLQGTLPERLLL  451 (763)
Q Consensus       373 ~~~L~~L~l~~~~~~~~l~-~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~f~~L~~L~l~~~~~~l~~~~~~~~~~  451 (763)
                      +++|+.|++++|......+ .+..+++|+.|++++|+..             ..+++|+.|.+..  +.+.+.+|..+..
T Consensus       123 l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~-------------~~~~~l~~L~~~~--n~~~g~ip~~~~~  187 (208)
T 2o6s_A          123 LTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWD-------------CTCPGIRYLSEWI--NKHSGVVRNSAGS  187 (208)
T ss_dssp             CTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBC-------------CCTTTTHHHHHHH--HHCTTTBBCTTSS
T ss_pred             CCcCCEEECCCCccceeCHHHhccCCCccEEEecCCCee-------------cCCCCHHHHHHHH--HhCCceeeccCcc
Confidence            5566666666664332222 3566777777777765321             1256777777765  5666677765544


Q ss_pred             c
Q 039689          452 L  452 (763)
Q Consensus       452 L  452 (763)
                      +
T Consensus       188 l  188 (208)
T 2o6s_A          188 V  188 (208)
T ss_dssp             B
T ss_pred             c
Confidence            4

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=99.36  E-value=9.4e-14  Score=144.82  Aligned_cols=204  Identities=17%  Similarity=0.154  Sum_probs=117.3

Q ss_pred             CcccEEEecCCCCCccCcccCCCCcccEEecCCCCchh--cchhhhhcccccEEeeccccccccccccccCccccccccc
Q 039689          197 PRLRVFSLRGYNIFELPKAIENLKHLRFLDLSTTKIEI--LRESINTLYNLHTLLLEDCRRLKKLCKDMGNLTKLHHLNN  274 (763)
Q Consensus       197 ~~Lr~L~L~~~~i~~lp~~~~~l~~L~~L~L~~~~i~~--lp~~~~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l  274 (763)
                      +.+++|++++|.+...+..+..+++|++|++++|.++.  +|..+..+++|++|++++|......|..++.+++|++|++
T Consensus        70 ~~l~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L  149 (336)
T 2ast_B           70 QGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNL  149 (336)
T ss_dssp             TTCSEEECTTCEECSCCCSCCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEEC
T ss_pred             ccceEEEcCCccccccchhhccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEEC
Confidence            56777888887777766556677888888888887763  6777778888888888876544456666777888888888


Q ss_pred             CCcccccc--ccc-CCCccCCCceeeecCcccccCcccchhhhhcCcc-cccceEEeeccCCCCCCccHHHHhhcCCCCC
Q 039689          275 SNVGSLEE--MLM-LKSLVHLQGTLEISRLENVKGVGDASEVQLNSKV-NLKALYLQWGVRDAVEPKTETQVIDMLKPHQ  350 (763)
Q Consensus       275 ~~~~~l~~--l~~-l~~L~~L~~~L~~~~~~~~~~~~~~~~~~l~~l~-~L~~L~l~~~~~~~~~~~~~~~~l~~l~~l~  350 (763)
                      ++|..+..  ++. +..+++|+ .|.+.+...+..  ......+..++ +|+.|++++|.....    .           
T Consensus       150 ~~~~~l~~~~l~~~~~~~~~L~-~L~l~~~~~l~~--~~~~~~~~~l~~~L~~L~l~~~~~~~~----~-----------  211 (336)
T 2ast_B          150 SGCSGFSEFALQTLLSSCSRLD-ELNLSWCFDFTE--KHVQVAVAHVSETITQLNLSGYRKNLQ----K-----------  211 (336)
T ss_dssp             TTCBSCCHHHHHHHHHHCTTCC-EEECCCCTTCCH--HHHHHHHHHSCTTCCEEECCSCGGGSC----H-----------
T ss_pred             CCCCCCCHHHHHHHHhcCCCCC-EEcCCCCCCcCh--HHHHHHHHhcccCCCEEEeCCCcccCC----H-----------
Confidence            87743442  333 44455555 555554322211  11233455566 777777765421000    0           


Q ss_pred             CceEEEeeeCCCCCCCccCCCCCCCceEEEEeccCCCC--CCCCCCCCCCCCcceecccCCceEeCccccCCCcCCCCCC
Q 039689          351 KLELTITGYGGTKFPIWLGDSLFSKLMLLKFDNCGTCT--SLPSVGQLPFLKDPVISGMGRVKIVGSEFYGSSCSVSFPS  428 (763)
Q Consensus       351 ~L~L~~~~~~~~~~p~~~~~~~~~~L~~L~l~~~~~~~--~l~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~f~~  428 (763)
                                 ..+|..+..  +++|+.|++++|..+.  .++.++.+++|++|++++|..+.....     .....+++
T Consensus       212 -----------~~l~~~~~~--~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~-----~~l~~~~~  273 (336)
T 2ast_B          212 -----------SDLSTLVRR--CPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETL-----LELGEIPT  273 (336)
T ss_dssp             -----------HHHHHHHHH--CTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGG-----GGGGGCTT
T ss_pred             -----------HHHHHHHhh--CCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCCCCCHHHH-----HHHhcCCC
Confidence                       011112222  5667777777766322  233566667777777776652211110     01123667


Q ss_pred             cceeeccc
Q 039689          429 LETLFFVD  436 (763)
Q Consensus       429 L~~L~l~~  436 (763)
                      |++|++.+
T Consensus       274 L~~L~l~~  281 (336)
T 2ast_B          274 LKTLQVFG  281 (336)
T ss_dssp             CCEEECTT
T ss_pred             CCEEeccC
Confidence            77777766

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=99.36  E-value=1.1e-14  Score=154.82  Aligned_cols=89  Identities=27%  Similarity=0.284  Sum_probs=70.2

Q ss_pred             hhhccCCCCcccEEEecCCCCCc-----cCcccCCCCcccEEecCCCCch----hcchhh-------hhcccccEEeecc
Q 039689          189 VLQRLLNLPRLRVFSLRGYNIFE-----LPKAIENLKHLRFLDLSTTKIE----ILRESI-------NTLYNLHTLLLED  252 (763)
Q Consensus       189 ~~~~~~~l~~Lr~L~L~~~~i~~-----lp~~~~~l~~L~~L~L~~~~i~----~lp~~~-------~~L~~L~~L~L~~  252 (763)
                      ++..+..+++|++|+|++|.++.     ++..+..+++|++|+|++|.+.    .+|..+       ..+++|++|+|++
T Consensus        24 l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~  103 (386)
T 2ca6_A           24 VFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSD  103 (386)
T ss_dssp             TSHHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCS
T ss_pred             HHHHHhcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCC
Confidence            45556778899999999998775     3345788999999999997554    335444       6889999999999


Q ss_pred             cccccc-----ccccccCcccccccccCCcc
Q 039689          253 CRRLKK-----LCKDMGNLTKLHHLNNSNVG  278 (763)
Q Consensus       253 ~~~l~~-----lp~~i~~L~~L~~L~l~~~~  278 (763)
                      | .+..     +|..+..+++|++|++++|.
T Consensus       104 n-~l~~~~~~~l~~~l~~~~~L~~L~L~~n~  133 (386)
T 2ca6_A          104 N-AFGPTAQEPLIDFLSKHTPLEHLYLHNNG  133 (386)
T ss_dssp             C-CCCTTTHHHHHHHHHHCTTCCEEECCSSC
T ss_pred             C-cCCHHHHHHHHHHHHhCCCCCEEECcCCC
Confidence            5 4544     77788899999999999987

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=99.35  E-value=1.5e-14  Score=150.77  Aligned_cols=126  Identities=17%  Similarity=0.203  Sum_probs=89.1

Q ss_pred             cccEEEecCCCCCccCcccCCC--CcccEEecCCCCchhcchhhhhcccccEEeecccccccc-ccccccCccccccccc
Q 039689          198 RLRVFSLRGYNIFELPKAIENL--KHLRFLDLSTTKIEILRESINTLYNLHTLLLEDCRRLKK-LCKDMGNLTKLHHLNN  274 (763)
Q Consensus       198 ~Lr~L~L~~~~i~~lp~~~~~l--~~L~~L~L~~~~i~~lp~~~~~L~~L~~L~L~~~~~l~~-lp~~i~~L~~L~~L~l  274 (763)
                      .++.++++++.+.  |..+..+  .++++|++++|.+...+..+..+++|++|++++|..... +|..+..+++|++|++
T Consensus        48 ~~~~l~l~~~~~~--~~~~~~~~~~~l~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L  125 (336)
T 2ast_B           48 LWQTLDLTGKNLH--PDVTGRLLSQGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSL  125 (336)
T ss_dssp             TSSEEECTTCBCC--HHHHHHHHHTTCSEEECTTCEECSCCCSCCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEEC
T ss_pred             hheeeccccccCC--HHHHHhhhhccceEEEcCCccccccchhhccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeC
Confidence            4788999998876  5667777  899999999999998877788999999999999753333 7778999999999999


Q ss_pred             CCccccc-ccc-cCCCccCCCceeeecCcccccCcccchhhhhcCcccccceEEeec
Q 039689          275 SNVGSLE-EML-MLKSLVHLQGTLEISRLENVKGVGDASEVQLNSKVNLKALYLQWG  329 (763)
Q Consensus       275 ~~~~~l~-~l~-~l~~L~~L~~~L~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~  329 (763)
                      ++|. +. ..+ .+..+++|+ .|.+.+...+..  ......+.++++|+.|++++|
T Consensus       126 ~~~~-l~~~~~~~l~~~~~L~-~L~L~~~~~l~~--~~l~~~~~~~~~L~~L~l~~~  178 (336)
T 2ast_B          126 EGLR-LSDPIVNTLAKNSNLV-RLNLSGCSGFSE--FALQTLLSSCSRLDELNLSWC  178 (336)
T ss_dssp             TTCB-CCHHHHHHHTTCTTCS-EEECTTCBSCCH--HHHHHHHHHCTTCCEEECCCC
T ss_pred             cCcc-cCHHHHHHHhcCCCCC-EEECCCCCCCCH--HHHHHHHhcCCCCCEEcCCCC
Confidence            9997 43 222 255566666 666655422211  012233445556666666544

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=99.35  E-value=1.4e-11  Score=122.23  Aligned_cols=165  Identities=21%  Similarity=0.294  Sum_probs=94.2

Q ss_pred             ceeeeccCCCcccccchhhhcCCCCcceEEEecCccccccCC--CCCCCCccEEEEccCCCCCCCchhhhcCCCCCcceE
Q 039689          559 RTVKIEDCNALESLPEAWMHNSNSSLESLKIRSCNSLVSFPD--FALPSQLRTVTIKGCDALESLPEAWMQNSSTSLESL  636 (763)
Q Consensus       559 ~~L~l~~~~~l~~l~~~~~~~~l~~L~~L~l~~c~~l~~~~~--~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L  636 (763)
                      +++++++ +.++.+|..+    .++++.|++++|.. ..++.  +..+++|++|++++|. ++.++...+ ..+++|+.|
T Consensus        17 ~~l~~~~-~~l~~~p~~~----~~~l~~L~L~~n~l-~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~-~~l~~L~~L   88 (251)
T 3m19_A           17 KEVDCQG-KSLDSVPSGI----PADTEKLDLQSTGL-ATLSDATFRGLTKLTWLNLDYNQ-LQTLSAGVF-DDLTELGTL   88 (251)
T ss_dssp             TEEECTT-CCCSSCCSCC----CTTCCEEECTTSCC-CCCCTTTTTTCTTCCEEECTTSC-CCCCCTTTT-TTCTTCCEE
T ss_pred             eEEecCC-CCccccCCCC----CCCCCEEEccCCCc-CccCHhHhcCcccCCEEECCCCc-CCccCHhHh-ccCCcCCEE
Confidence            3344443 5666777653    35677777776553 33332  5566777777777774 344433322 567777777


Q ss_pred             eeccCCCccccccccCCCCCcEEEEecCCCCCCCccceEEecCCCCCccccCC----CCCCcCeEeeccCCCCccccC-C
Q 039689          637 AIDSCDSLTYIARIQLPPSLKRLIIFRCDNLRFNSLRKLKISGGCPDLVSSPR----FPASLTELKISDMPSLERLSS-I  711 (763)
Q Consensus       637 ~l~~c~~l~~l~~~~~~~~L~~L~l~~c~~l~~~~L~~L~l~~~~~~l~~~~~----~~~~L~~L~l~~~~~l~~ip~-~  711 (763)
                      ++++| .++.++...+.              .+++|+.|++++  +.+..++.    .+++|++|++++ +.++.+|. .
T Consensus        89 ~L~~n-~l~~~~~~~~~--------------~l~~L~~L~L~~--N~l~~~~~~~~~~l~~L~~L~Ls~-N~l~~~~~~~  150 (251)
T 3m19_A           89 GLANN-QLASLPLGVFD--------------HLTQLDKLYLGG--NQLKSLPSGVFDRLTKLKELRLNT-NQLQSIPAGA  150 (251)
T ss_dssp             ECTTS-CCCCCCTTTTT--------------TCTTCCEEECCS--SCCCCCCTTTTTTCTTCCEEECCS-SCCCCCCTTT
T ss_pred             ECCCC-cccccChhHhc--------------ccCCCCEEEcCC--CcCCCcChhHhccCCcccEEECcC-CcCCccCHHH
Confidence            77776 55555544331              233444444443  33444443    345677777777 46666665 3


Q ss_pred             CCCCCCcCceecccCCCCccccCCC--cccccceeeeccCh
Q 039689          712 GENLTSLKFLDLDNCPKLKYFSKQG--LPKSLLRLIIDECP  750 (763)
Q Consensus       712 ~~~l~~L~~L~l~~c~~L~~l~~~~--~~~~L~~L~i~~C~  750 (763)
                      +..+++|++|++++| +++.++...  -.++|+.|+++++|
T Consensus       151 ~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~l~~N~  190 (251)
T 3m19_A          151 FDKLTNLQTLSLSTN-QLQSVPHGAFDRLGKLQTITLFGNQ  190 (251)
T ss_dssp             TTTCTTCCEEECCSS-CCSCCCTTTTTTCTTCCEEECCSCC
T ss_pred             cCcCcCCCEEECCCC-cCCccCHHHHhCCCCCCEEEeeCCc
Confidence            466677777777764 566665422  23567777776654

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=99.35  E-value=4e-12  Score=139.96  Aligned_cols=79  Identities=22%  Similarity=0.285  Sum_probs=68.2

Q ss_pred             CcccEEEecCCCCCccCcccCCCCcccEEecCCCCchhcchhhhhcccccEEeeccccccccccccccCcccccccccCC
Q 039689          197 PRLRVFSLRGYNIFELPKAIENLKHLRFLDLSTTKIEILRESINTLYNLHTLLLEDCRRLKKLCKDMGNLTKLHHLNNSN  276 (763)
Q Consensus       197 ~~Lr~L~L~~~~i~~lp~~~~~l~~L~~L~L~~~~i~~lp~~~~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l~~  276 (763)
                      .+|++|++++|.++.+|..+.  ++|++|+|++|.++.+|   +.+++|++|++++ +.+..+|. +.+  +|++|++++
T Consensus        59 ~~L~~L~Ls~n~L~~lp~~l~--~~L~~L~Ls~N~l~~ip---~~l~~L~~L~Ls~-N~l~~ip~-l~~--~L~~L~Ls~  129 (571)
T 3cvr_A           59 NQFSELQLNRLNLSSLPDNLP--PQITVLEITQNALISLP---ELPASLEYLDACD-NRLSTLPE-LPA--SLKHLDVDN  129 (571)
T ss_dssp             TTCSEEECCSSCCSCCCSCCC--TTCSEEECCSSCCSCCC---CCCTTCCEEECCS-SCCSCCCC-CCT--TCCEEECCS
T ss_pred             CCccEEEeCCCCCCccCHhHc--CCCCEEECcCCCCcccc---cccCCCCEEEccC-CCCCCcch-hhc--CCCEEECCC
Confidence            389999999999999998764  89999999999999999   5689999999999 47788988 776  999999999


Q ss_pred             ccccccccc
Q 039689          277 VGSLEEMLM  285 (763)
Q Consensus       277 ~~~l~~l~~  285 (763)
                      |. +..+|.
T Consensus       130 N~-l~~lp~  137 (571)
T 3cvr_A          130 NQ-LTMLPE  137 (571)
T ss_dssp             SC-CSCCCC
T ss_pred             Cc-CCCCCC
Confidence            97 555543

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=99.34  E-value=4.1e-13  Score=133.96  Aligned_cols=93  Identities=20%  Similarity=0.267  Sum_probs=76.8

Q ss_pred             CCCcccEEEecCCCCCccCcccCCCCcccEEecCCCCchhcchhhhhcccccEEeeccccccccccccccCccccccccc
Q 039689          195 NLPRLRVFSLRGYNIFELPKAIENLKHLRFLDLSTTKIEILRESINTLYNLHTLLLEDCRRLKKLCKDMGNLTKLHHLNN  274 (763)
Q Consensus       195 ~l~~Lr~L~L~~~~i~~lp~~~~~l~~L~~L~L~~~~i~~lp~~~~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l  274 (763)
                      .+.++..++++++.++.++ .+..+++|++|++++|.++.+| .++.+++|++|++++ +.+..+|. ++++++|++|++
T Consensus        17 ~l~~l~~l~l~~~~i~~~~-~~~~l~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~L~~-N~i~~~~~-l~~l~~L~~L~L   92 (263)
T 1xeu_A           17 GLANAVKQNLGKQSVTDLV-SQKELSGVQNFNGDNSNIQSLA-GMQFFTNLKELHLSH-NQISDLSP-LKDLTKLEELSV   92 (263)
T ss_dssp             HHHHHHHHHHTCSCTTSEE-CHHHHTTCSEEECTTSCCCCCT-TGGGCTTCCEEECCS-SCCCCCGG-GTTCSSCCEEEC
T ss_pred             HHHHHHHHHhcCCCccccc-chhhcCcCcEEECcCCCcccch-HHhhCCCCCEEECCC-CccCCChh-hccCCCCCEEEC
Confidence            4556777788889998887 6889999999999999999998 799999999999999 57888887 999999999999


Q ss_pred             CCcccccccccCCCccCCC
Q 039689          275 SNVGSLEEMLMLKSLVHLQ  293 (763)
Q Consensus       275 ~~~~~l~~l~~l~~L~~L~  293 (763)
                      ++|. +..++.+.. .+|+
T Consensus        93 ~~N~-l~~l~~~~~-~~L~  109 (263)
T 1xeu_A           93 NRNR-LKNLNGIPS-ACLS  109 (263)
T ss_dssp             CSSC-CSCCTTCCC-SSCC
T ss_pred             CCCc-cCCcCcccc-Cccc
Confidence            9997 666554333 3343

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=99.33  E-value=4.4e-12  Score=128.61  Aligned_cols=97  Identities=25%  Similarity=0.397  Sum_probs=81.2

Q ss_pred             ccCCCCcccEEEecCCCCCccCcccCCCCcccEEecCCCCchhcchhhhhcccccEEeeccccccccccccccCcccccc
Q 039689          192 RLLNLPRLRVFSLRGYNIFELPKAIENLKHLRFLDLSTTKIEILRESINTLYNLHTLLLEDCRRLKKLCKDMGNLTKLHH  271 (763)
Q Consensus       192 ~~~~l~~Lr~L~L~~~~i~~lp~~~~~l~~L~~L~L~~~~i~~lp~~~~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~  271 (763)
                      .+..+++|++|++++|.++.++. +..+++|++|++++|.++.+|. ++.+++|++|++++| .+..++ .++.+++|++
T Consensus        63 ~~~~l~~L~~L~L~~n~l~~~~~-l~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~L~~n-~i~~~~-~l~~l~~L~~  138 (291)
T 1h6t_A           63 GIQYLPNVTKLFLNGNKLTDIKP-LANLKNLGWLFLDENKVKDLSS-LKDLKKLKSLSLEHN-GISDIN-GLVHLPQLES  138 (291)
T ss_dssp             TGGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCGGG-GTTCTTCCEEECTTS-CCCCCG-GGGGCTTCCE
T ss_pred             hHhcCCCCCEEEccCCccCCCcc-cccCCCCCEEECCCCcCCCChh-hccCCCCCEEECCCC-cCCCCh-hhcCCCCCCE
Confidence            46778999999999999999877 9999999999999999999765 999999999999994 677774 5999999999


Q ss_pred             cccCCcccccccccCCCccCCC
Q 039689          272 LNNSNVGSLEEMLMLKSLVHLQ  293 (763)
Q Consensus       272 L~l~~~~~l~~l~~l~~L~~L~  293 (763)
                      |++++|. +..++.+..+++|+
T Consensus       139 L~l~~n~-l~~~~~l~~l~~L~  159 (291)
T 1h6t_A          139 LYLGNNK-ITDITVLSRLTKLD  159 (291)
T ss_dssp             EECCSSC-CCCCGGGGGCTTCS
T ss_pred             EEccCCc-CCcchhhccCCCCC
Confidence            9999997 55444333333333

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=99.32  E-value=6.2e-12  Score=122.60  Aligned_cols=75  Identities=24%  Similarity=0.289  Sum_probs=36.0

Q ss_pred             EEEecCCCCCccCcccCCCCcccEEecCCCCchhc-chhhhhcccccEEeecccccccccccc-ccCcccccccccCCcc
Q 039689          201 VFSLRGYNIFELPKAIENLKHLRFLDLSTTKIEIL-RESINTLYNLHTLLLEDCRRLKKLCKD-MGNLTKLHHLNNSNVG  278 (763)
Q Consensus       201 ~L~L~~~~i~~lp~~~~~l~~L~~L~L~~~~i~~l-p~~~~~L~~L~~L~L~~~~~l~~lp~~-i~~L~~L~~L~l~~~~  278 (763)
                      .++.+++.++.+|..+.  ++|++|+|++|.++.+ |..|+.+++|++|+|++ +.+..+|.. ++.+++|++|++++|.
T Consensus        23 ~v~c~~~~l~~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~-N~l~~i~~~~~~~l~~L~~L~Ls~N~   99 (229)
T 3e6j_A           23 TVDCRSKRHASVPAGIP--TNAQILYLHDNQITKLEPGVFDSLINLKELYLGS-NQLGALPVGVFDSLTQLTVLDLGTNQ   99 (229)
T ss_dssp             EEECTTSCCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCS-SCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred             EeEccCCCcCccCCCCC--CCCCEEEcCCCccCccCHHHhhCccCCcEEECCC-CCCCCcChhhcccCCCcCEEECCCCc
Confidence            34444444555544332  4555555555555544 34445555555555555 234444433 3455555555555544

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=99.32  E-value=3.5e-13  Score=141.72  Aligned_cols=93  Identities=14%  Similarity=0.134  Sum_probs=68.0

Q ss_pred             hhhhccCCCCcccEEEecCCCCCccC-----cccCCCC-cccEEecCCCCchhc-chhhhhc-----ccccEEeeccccc
Q 039689          188 NVLQRLLNLPRLRVFSLRGYNIFELP-----KAIENLK-HLRFLDLSTTKIEIL-RESINTL-----YNLHTLLLEDCRR  255 (763)
Q Consensus       188 ~~~~~~~~l~~Lr~L~L~~~~i~~lp-----~~~~~l~-~L~~L~L~~~~i~~l-p~~~~~L-----~~L~~L~L~~~~~  255 (763)
                      .++..+...++|++|++++|.++..+     ..+..++ +|++|+|++|.++.. +..+..+     ++|++|+|++|. 
T Consensus        13 ~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~-   91 (362)
T 3goz_A           13 PVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNF-   91 (362)
T ss_dssp             HHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSC-
T ss_pred             HHHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCCc-
Confidence            34444466667999999999988775     5677788 899999999988865 6667765     889999999854 


Q ss_pred             cccc-ccccc----Cc-ccccccccCCcccccc
Q 039689          256 LKKL-CKDMG----NL-TKLHHLNNSNVGSLEE  282 (763)
Q Consensus       256 l~~l-p~~i~----~L-~~L~~L~l~~~~~l~~  282 (763)
                      +... +..++    .+ ++|++|++++|. +..
T Consensus        92 l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~-l~~  123 (362)
T 3goz_A           92 LSYKSSDELVKTLAAIPFTITVLDLGWND-FSS  123 (362)
T ss_dssp             GGGSCHHHHHHHHHTSCTTCCEEECCSSC-GGG
T ss_pred             CChHHHHHHHHHHHhCCCCccEEECcCCc-CCc
Confidence            5433 33333    34 789999998887 443

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=99.32  E-value=7.2e-12  Score=121.22  Aligned_cols=76  Identities=16%  Similarity=0.289  Sum_probs=41.8

Q ss_pred             cEEEecCCCCCccCcccCCCCcccEEecCCCCchhcch-hhhhcccccEEeeccccccccc-cccccCcccccccccCCc
Q 039689          200 RVFSLRGYNIFELPKAIENLKHLRFLDLSTTKIEILRE-SINTLYNLHTLLLEDCRRLKKL-CKDMGNLTKLHHLNNSNV  277 (763)
Q Consensus       200 r~L~L~~~~i~~lp~~~~~l~~L~~L~L~~~~i~~lp~-~~~~L~~L~~L~L~~~~~l~~l-p~~i~~L~~L~~L~l~~~  277 (763)
                      +.++++++.++.+|..+.  .+|++|+|++|.|+.+|. .|..+++|++|+|++| .+..+ |..|.++++|++|++++|
T Consensus        14 ~~v~c~~~~l~~iP~~l~--~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N-~i~~~~~~~~~~l~~L~~L~Ls~N   90 (220)
T 2v9t_B           14 NIVDCRGKGLTEIPTNLP--ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNN-QISELAPDAFQGLRSLNSLVLYGN   90 (220)
T ss_dssp             TEEECTTSCCSSCCSSCC--TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSS-CCCEECTTTTTTCSSCCEEECCSS
T ss_pred             CEEEcCCCCcCcCCCccC--cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCC-cCCCcCHHHhhCCcCCCEEECCCC
Confidence            345555555555555443  455666666666655543 4555666666666653 33333 444556666666666655


Q ss_pred             c
Q 039689          278 G  278 (763)
Q Consensus       278 ~  278 (763)
                      .
T Consensus        91 ~   91 (220)
T 2v9t_B           91 K   91 (220)
T ss_dssp             C
T ss_pred             c
Confidence            4

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=99.31  E-value=2.2e-12  Score=124.00  Aligned_cols=87  Identities=24%  Similarity=0.317  Sum_probs=70.7

Q ss_pred             CCcccEEEecCCCCCccC-cccCCCCcccEEecCCCCchhcchh-hhhcccccEEeecccccccccccc-ccCccccccc
Q 039689          196 LPRLRVFSLRGYNIFELP-KAIENLKHLRFLDLSTTKIEILRES-INTLYNLHTLLLEDCRRLKKLCKD-MGNLTKLHHL  272 (763)
Q Consensus       196 l~~Lr~L~L~~~~i~~lp-~~~~~l~~L~~L~L~~~~i~~lp~~-~~~L~~L~~L~L~~~~~l~~lp~~-i~~L~~L~~L  272 (763)
                      .++|++|++++|.++.++ ..|..+++|++|++++|.++.+|.. |+.+++|++|++++ +.+..+|.. ++.+++|++|
T Consensus        27 ~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~-n~l~~~~~~~~~~l~~L~~L  105 (208)
T 2o6s_A           27 PAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLST-NQLQSLPNGVFDKLTQLKEL  105 (208)
T ss_dssp             CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCS-SCCCCCCTTTTTTCTTCCEE
T ss_pred             CCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCC-CcCCccCHhHhcCccCCCEE
Confidence            457899999999988886 4578899999999999999888654 68899999999998 467777665 6889999999


Q ss_pred             ccCCcccccccc
Q 039689          273 NNSNVGSLEEML  284 (763)
Q Consensus       273 ~l~~~~~l~~l~  284 (763)
                      ++++|. +..++
T Consensus       106 ~L~~N~-l~~~~  116 (208)
T 2o6s_A          106 ALNTNQ-LQSLP  116 (208)
T ss_dssp             ECCSSC-CCCCC
T ss_pred             EcCCCc-CcccC
Confidence            999887 55443

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=99.31  E-value=7.1e-13  Score=139.37  Aligned_cols=75  Identities=15%  Similarity=0.037  Sum_probs=32.9

Q ss_pred             EecCCCCCcc-CcccCCCCcccEEecCCCCchhcc-----hhhhhcc-cccEEeeccccccccc-cccccCc-----ccc
Q 039689          203 SLRGYNIFEL-PKAIENLKHLRFLDLSTTKIEILR-----ESINTLY-NLHTLLLEDCRRLKKL-CKDMGNL-----TKL  269 (763)
Q Consensus       203 ~L~~~~i~~l-p~~~~~l~~L~~L~L~~~~i~~lp-----~~~~~L~-~L~~L~L~~~~~l~~l-p~~i~~L-----~~L  269 (763)
                      .+++|.++.. |..+....+|++|+|++|.++..+     ..+..++ +|++|+|++| .+... +..++.+     ++|
T Consensus         4 ~ls~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N-~l~~~~~~~l~~~l~~~~~~L   82 (362)
T 3goz_A            4 KLTLHPGSNPVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGN-SLGFKNSDELVQILAAIPANV   82 (362)
T ss_dssp             ECCCCTTCCHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSS-CGGGSCHHHHHHHHHTSCTTC
T ss_pred             ccccccchHHHHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCC-CCCHHHHHHHHHHHhccCCCc
Confidence            4444444432 333333333555555555554443     3344444 4555555553 22222 3333333     455


Q ss_pred             cccccCCcc
Q 039689          270 HHLNNSNVG  278 (763)
Q Consensus       270 ~~L~l~~~~  278 (763)
                      ++|++++|.
T Consensus        83 ~~L~Ls~n~   91 (362)
T 3goz_A           83 TSLNLSGNF   91 (362)
T ss_dssp             CEEECCSSC
T ss_pred             cEEECcCCc
Confidence            555555554

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=99.30  E-value=9.4e-12  Score=120.41  Aligned_cols=147  Identities=14%  Similarity=0.142  Sum_probs=94.0

Q ss_pred             cEEEecCCCCCccCcccCCCCcccEEecCCCCchhcc--hhhhhcccccEEeeccccccccccc-cccCcccccccccCC
Q 039689          200 RVFSLRGYNIFELPKAIENLKHLRFLDLSTTKIEILR--ESINTLYNLHTLLLEDCRRLKKLCK-DMGNLTKLHHLNNSN  276 (763)
Q Consensus       200 r~L~L~~~~i~~lp~~~~~l~~L~~L~L~~~~i~~lp--~~~~~L~~L~~L~L~~~~~l~~lp~-~i~~L~~L~~L~l~~  276 (763)
                      +++++++|.++.+|..+.  ..+++|+|++|.++.++  ..|+.+++|++|+|++ +.+..+|. .|+.+++|++|++++
T Consensus        14 ~~l~~s~n~l~~iP~~~~--~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~-N~i~~i~~~~~~~l~~L~~L~Ls~   90 (220)
T 2v70_A           14 TTVDCSNQKLNKIPEHIP--QYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSN-NKITDIEEGAFEGASGVNEILLTS   90 (220)
T ss_dssp             TEEECCSSCCSSCCSCCC--TTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCS-SCCCEECTTTTTTCTTCCEEECCS
T ss_pred             CEeEeCCCCcccCccCCC--CCCCEEEcCCCcCCccCchhhhccCCCCCEEECCC-CcCCEECHHHhCCCCCCCEEECCC
Confidence            578888888888887654  45678888888888773  3478888888888888 45666655 588888888888888


Q ss_pred             cccccccccCCCccCCCceeeecCcccccCcccchhhhhcCcccccceEEeeccCCCCCCccHHHHhhcCCCCCCceEEE
Q 039689          277 VGSLEEMLMLKSLVHLQGTLEISRLENVKGVGDASEVQLNSKVNLKALYLQWGVRDAVEPKTETQVIDMLKPHQKLELTI  356 (763)
Q Consensus       277 ~~~l~~l~~l~~L~~L~~~L~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~l~~l~~L~L~~  356 (763)
                      |. +..++.                           ..+.++++|+.|++++|.....                      
T Consensus        91 N~-l~~~~~---------------------------~~~~~l~~L~~L~Ls~N~l~~~----------------------  120 (220)
T 2v70_A           91 NR-LENVQH---------------------------KMFKGLESLKTLMLRSNRITCV----------------------  120 (220)
T ss_dssp             SC-CCCCCG---------------------------GGGTTCSSCCEEECTTSCCCCB----------------------
T ss_pred             Cc-cCccCH---------------------------hHhcCCcCCCEEECCCCcCCeE----------------------
Confidence            86 433321                           2234444555555544421110                      


Q ss_pred             eeeCCCCCCCccCCCCCCCceEEEEeccCCCCCCC-CCCCCCCCCcceecccC
Q 039689          357 TGYGGTKFPIWLGDSLFSKLMLLKFDNCGTCTSLP-SVGQLPFLKDPVISGMG  408 (763)
Q Consensus       357 ~~~~~~~~p~~~~~~~~~~L~~L~l~~~~~~~~l~-~l~~l~~L~~L~l~~~~  408 (763)
                             .|..+..  +++|+.|++++|......| .+..+++|+.|++++|+
T Consensus       121 -------~~~~~~~--l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~  164 (220)
T 2v70_A          121 -------GNDSFIG--LSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANP  164 (220)
T ss_dssp             -------CTTSSTT--CTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCC
T ss_pred             -------CHhHcCC--CccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcC
Confidence                   1233333  5677777777775444333 56667777777777653

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=99.27  E-value=3.2e-11  Score=132.77  Aligned_cols=176  Identities=28%  Similarity=0.368  Sum_probs=104.7

Q ss_pred             cccEEEEecCCcccccCCCccccceeccccchhhhhhcCCCCCCceEEEeccCCccccccccCcCCccccccCceeeccC
Q 039689          472 ALRELEIDGCKGVVLSSPTDLSSLKLVHSRDMAKEVFEQGLPKLERLEIQHVREQTYLWRSETRLPQDIRSLNRLQISRC  551 (763)
Q Consensus       472 ~L~~L~l~~~~~~~~~~~~~L~~L~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~p~~l~~L~~L~l~~~  551 (763)
                      +|+.|++++|....++.                     ..+++|++|++++|...        .+|..+++|+.|++++ 
T Consensus        60 ~L~~L~Ls~n~L~~lp~---------------------~l~~~L~~L~Ls~N~l~--------~ip~~l~~L~~L~Ls~-  109 (571)
T 3cvr_A           60 QFSELQLNRLNLSSLPD---------------------NLPPQITVLEITQNALI--------SLPELPASLEYLDACD-  109 (571)
T ss_dssp             TCSEEECCSSCCSCCCS---------------------CCCTTCSEEECCSSCCS--------CCCCCCTTCCEEECCS-
T ss_pred             CccEEEeCCCCCCccCH---------------------hHcCCCCEEECcCCCCc--------ccccccCCCCEEEccC-
Confidence            67788887775443211                     12356777777777533        3443334444444444 


Q ss_pred             CchhhhcceeeeccCCCcccccchhhhcCCCCcceEEEecCccccccCCCCCCCCccEEEEccCCCCCCCchhhhcCCCC
Q 039689          552 PQLISLLRTVKIEDCNALESLPEAWMHNSNSSLESLKIRSCNSLVSFPDFALPSQLRTVTIKGCDALESLPEAWMQNSST  631 (763)
Q Consensus       552 ~~l~~~L~~L~l~~~~~l~~l~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~  631 (763)
                                     |.++.+|. +    ..+|++|++++|. ++.+|.  .+++|++|++++| .++.+|.     .++
T Consensus       110 ---------------N~l~~ip~-l----~~~L~~L~Ls~N~-l~~lp~--~l~~L~~L~Ls~N-~l~~lp~-----~l~  160 (571)
T 3cvr_A          110 ---------------NRLSTLPE-L----PASLKHLDVDNNQ-LTMLPE--LPALLEYINADNN-QLTMLPE-----LPT  160 (571)
T ss_dssp             ---------------SCCSCCCC-C----CTTCCEEECCSSC-CSCCCC--CCTTCCEEECCSS-CCSCCCC-----CCT
T ss_pred             ---------------CCCCCcch-h----hcCCCEEECCCCc-CCCCCC--cCccccEEeCCCC-ccCcCCC-----cCC
Confidence                           45666665 2    2377777776654 455665  5677777777777 3455654     356


Q ss_pred             CcceEeeccCCCccccccccCCCCCcEEEEecCCCCCCCccceEEecCCCCCccccCCCCCCc-------CeEeeccCCC
Q 039689          632 SLESLAIDSCDSLTYIARIQLPPSLKRLIIFRCDNLRFNSLRKLKISGGCPDLVSSPRFPASL-------TELKISDMPS  704 (763)
Q Consensus       632 ~L~~L~l~~c~~l~~l~~~~~~~~L~~L~l~~c~~l~~~~L~~L~l~~~~~~l~~~~~~~~~L-------~~L~l~~~~~  704 (763)
                      +|+.|++++| .++.+|.  +.++|+.|++                ++  +.+..+|....+|       +.|++++ +.
T Consensus       161 ~L~~L~Ls~N-~L~~lp~--l~~~L~~L~L----------------s~--N~L~~lp~~~~~L~~~~~~L~~L~Ls~-N~  218 (571)
T 3cvr_A          161 SLEVLSVRNN-QLTFLPE--LPESLEALDV----------------ST--NLLESLPAVPVRNHHSEETEIFFRCRE-NR  218 (571)
T ss_dssp             TCCEEECCSS-CCSCCCC--CCTTCCEEEC----------------CS--SCCSSCCCCC--------CCEEEECCS-SC
T ss_pred             CcCEEECCCC-CCCCcch--hhCCCCEEEC----------------cC--CCCCchhhHHHhhhcccccceEEecCC-Cc
Confidence            7777777777 5555554  3334444433                32  2333333322355       8888888 57


Q ss_pred             CccccCCCCCCCCcCceecccCCC
Q 039689          705 LERLSSIGENLTSLKFLDLDNCPK  728 (763)
Q Consensus       705 l~~ip~~~~~l~~L~~L~l~~c~~  728 (763)
                      ++.+|..+..+++|+.|++++|+-
T Consensus       219 l~~lp~~l~~l~~L~~L~L~~N~l  242 (571)
T 3cvr_A          219 ITHIPENILSLDPTCTIILEDNPL  242 (571)
T ss_dssp             CCCCCGGGGGSCTTEEEECCSSSC
T ss_pred             ceecCHHHhcCCCCCEEEeeCCcC
Confidence            788887777788888888888753

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=99.27  E-value=9.6e-12  Score=120.34  Aligned_cols=127  Identities=20%  Similarity=0.254  Sum_probs=98.3

Q ss_pred             CcccEEEecCCCCCccC-cccCCCCcccEEecCCCCchhc-chhhhhcccccEEeecccccccccccc-ccCcccccccc
Q 039689          197 PRLRVFSLRGYNIFELP-KAIENLKHLRFLDLSTTKIEIL-RESINTLYNLHTLLLEDCRRLKKLCKD-MGNLTKLHHLN  273 (763)
Q Consensus       197 ~~Lr~L~L~~~~i~~lp-~~~~~l~~L~~L~L~~~~i~~l-p~~~~~L~~L~~L~L~~~~~l~~lp~~-i~~L~~L~~L~  273 (763)
                      +.|+.|++++|.++.+| ..|..+++|++|+|++|.++.+ |..|.++++|++|+|++ +.+..+|.. +..+++|++|+
T Consensus        32 ~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~-N~l~~l~~~~f~~l~~L~~L~  110 (220)
T 2v9t_B           32 ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYG-NKITELPKSLFEGLFSLQLLL  110 (220)
T ss_dssp             TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCS-SCCCCCCTTTTTTCTTCCEEE
T ss_pred             cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCC-CcCCccCHhHccCCCCCCEEE
Confidence            67999999999999886 5789999999999999999977 78899999999999999 578888876 68899999999


Q ss_pred             cCCccccccccc--CCCccCCCceeeecCcccccCcccchhhhhcCcccccceEEeecc
Q 039689          274 NSNVGSLEEMLM--LKSLVHLQGTLEISRLENVKGVGDASEVQLNSKVNLKALYLQWGV  330 (763)
Q Consensus       274 l~~~~~l~~l~~--l~~L~~L~~~L~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~  330 (763)
                      +++|. +..++.  +..+++|+ .|.+.+.    .+.......+..+++|+.|++++|.
T Consensus       111 L~~N~-l~~~~~~~~~~l~~L~-~L~L~~N----~l~~~~~~~~~~l~~L~~L~L~~N~  163 (220)
T 2v9t_B          111 LNANK-INCLRVDAFQDLHNLN-LLSLYDN----KLQTIAKGTFSPLRAIQTMHLAQNP  163 (220)
T ss_dssp             CCSSC-CCCCCTTTTTTCTTCC-EEECCSS----CCSCCCTTTTTTCTTCCEEECCSSC
T ss_pred             CCCCC-CCEeCHHHcCCCCCCC-EEECCCC----cCCEECHHHHhCCCCCCEEEeCCCC
Confidence            99997 666543  56666666 6666542    2233333456667777777776664

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=99.26  E-value=4e-12  Score=141.60  Aligned_cols=184  Identities=18%  Similarity=0.216  Sum_probs=131.2

Q ss_pred             ccEEEecCCCCCccCcccCCCCcccEEecCCCCchhcchhhhhcccccEEeeccccccccccccccCcccccccccCCcc
Q 039689          199 LRVFSLRGYNIFELPKAIENLKHLRFLDLSTTKIEILRESINTLYNLHTLLLEDCRRLKKLCKDMGNLTKLHHLNNSNVG  278 (763)
Q Consensus       199 Lr~L~L~~~~i~~lp~~~~~l~~L~~L~L~~~~i~~lp~~~~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l~~~~  278 (763)
                      +..+.+..+.+..++ .+..+.+|++|++++|.+..+| .++.+++|+.|+|++ +.+..+|+ ++.+++|++|+|++|.
T Consensus        23 l~~l~l~~~~i~~~~-~~~~L~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~Ls~-N~l~~~~~-l~~l~~L~~L~Ls~N~   98 (605)
T 1m9s_A           23 TIKDNLKKKSVTDAV-TQNELNSIDQIIANNSDIKSVQ-GIQYLPNVTKLFLNG-NKLTDIKP-LTNLKNLGWLFLDENK   98 (605)
T ss_dssp             HHHHHTTCSCTTSEE-CHHHHTTCCCCBCTTCCCCCCT-TGGGCTTCCEEECTT-SCCCCCGG-GGGCTTCCEEECCSSC
T ss_pred             HHHHhccCCCccccc-chhcCCCCCEEECcCCCCCCCh-HHccCCCCCEEEeeC-CCCCCChh-hccCCCCCEEECcCCC
Confidence            344455556665553 3568899999999999999987 699999999999999 46777877 9999999999999998


Q ss_pred             cccccccCCCccCCCceeeecCcccccCcccchhhhhcCcccccceEEeeccCCCCCCccHHHHhhcCCCCCCceEEEee
Q 039689          279 SLEEMLMLKSLVHLQGTLEISRLENVKGVGDASEVQLNSKVNLKALYLQWGVRDAVEPKTETQVIDMLKPHQKLELTITG  358 (763)
Q Consensus       279 ~l~~l~~l~~L~~L~~~L~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~l~~l~~L~L~~~~  358 (763)
                       +..++.+..+++|+ .|.+.+..-    ...  ..+..+++|+.|+++.|..                           
T Consensus        99 -l~~l~~l~~l~~L~-~L~Ls~N~l----~~l--~~l~~l~~L~~L~Ls~N~l---------------------------  143 (605)
T 1m9s_A           99 -IKDLSSLKDLKKLK-SLSLEHNGI----SDI--NGLVHLPQLESLYLGNNKI---------------------------  143 (605)
T ss_dssp             -CCCCTTSTTCTTCC-EEECTTSCC----CCC--GGGGGCTTCSEEECCSSCC---------------------------
T ss_pred             -CCCChhhccCCCCC-EEEecCCCC----CCC--ccccCCCccCEEECCCCcc---------------------------
Confidence             88888888888887 777765321    111  2356667777777765532                           


Q ss_pred             eCCCCCCCccCCCCCCCceEEEEeccCCCCCCCCCCCCCCCCcceecccCCceEeCccccCCCcCCCCCCcceeeccc
Q 039689          359 YGGTKFPIWLGDSLFSKLMLLKFDNCGTCTSLPSVGQLPFLKDPVISGMGRVKIVGSEFYGSSCSVSFPSLETLFFVD  436 (763)
Q Consensus       359 ~~~~~~p~~~~~~~~~~L~~L~l~~~~~~~~l~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~f~~L~~L~l~~  436 (763)
                         ..+ ..+..  +++|+.|+|++|... .++++..+++|+.|+|++|.... +. .      ...+++|+.|++.+
T Consensus       144 ---~~l-~~l~~--l~~L~~L~Ls~N~l~-~~~~l~~l~~L~~L~Ls~N~i~~-l~-~------l~~l~~L~~L~L~~  206 (605)
T 1m9s_A          144 ---TDI-TVLSR--LTKLDTLSLEDNQIS-DIVPLAGLTKLQNLYLSKNHISD-LR-A------LAGLKNLDVLELFS  206 (605)
T ss_dssp             ---CCC-GGGGS--CTTCSEEECCSSCCC-CCGGGTTCTTCCEEECCSSCCCB-CG-G------GTTCTTCSEEECCS
T ss_pred             ---CCc-hhhcc--cCCCCEEECcCCcCC-CchhhccCCCCCEEECcCCCCCC-Ch-H------HccCCCCCEEEccC
Confidence               222 12333  788999999988644 44448888899999998874432 11 1      23467777777776

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=99.25  E-value=8.9e-12  Score=118.44  Aligned_cols=131  Identities=17%  Similarity=0.223  Sum_probs=102.8

Q ss_pred             ccCCCCcccEEEecCCCCCccCcccCCCCcccEEecCCCCchh-cchhhhhcccccEEeeccccccccccccccCccccc
Q 039689          192 RLLNLPRLRVFSLRGYNIFELPKAIENLKHLRFLDLSTTKIEI-LRESINTLYNLHTLLLEDCRRLKKLCKDMGNLTKLH  270 (763)
Q Consensus       192 ~~~~l~~Lr~L~L~~~~i~~lp~~~~~l~~L~~L~L~~~~i~~-lp~~~~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~  270 (763)
                      .+..+++|++|++++|.+..++ .+..+++|++|++++|.++. .|..++.+++|++|++++|......|..++.+++|+
T Consensus        61 ~l~~l~~L~~L~l~~n~~~~~~-~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~  139 (197)
T 4ezg_A           61 GIEYAHNIKDLTINNIHATNYN-PISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVN  139 (197)
T ss_dssp             TGGGCTTCSEEEEESCCCSCCG-GGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEEECCSSBCBGGGHHHHTTCSSCC
T ss_pred             HHhcCCCCCEEEccCCCCCcch-hhhcCCCCCEEEeECCccCcccChhhcCCCCCCEEEecCCccCcHhHHHHhhCCCCC
Confidence            4677889999999999876664 78889999999999999985 678889999999999999654445777799999999


Q ss_pred             ccccCCcccccccccCCCccCCCceeeecCcccccCcccchhhhhcCcccccceEEeecc
Q 039689          271 HLNNSNVGSLEEMLMLKSLVHLQGTLEISRLENVKGVGDASEVQLNSKVNLKALYLQWGV  330 (763)
Q Consensus       271 ~L~l~~~~~l~~l~~l~~L~~L~~~L~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~  330 (763)
                      +|++++|..+..++.+..+++|+ .+.+.+..    +....  .+..+++|+.|++.+|.
T Consensus       140 ~L~L~~n~~i~~~~~l~~l~~L~-~L~l~~n~----i~~~~--~l~~l~~L~~L~l~~N~  192 (197)
T 4ezg_A          140 SIDLSYNGAITDIMPLKTLPELK-SLNIQFDG----VHDYR--GIEDFPKLNQLYAFSQT  192 (197)
T ss_dssp             EEECCSCTBCCCCGGGGGCSSCC-EEECTTBC----CCCCT--TGGGCSSCCEEEECBC-
T ss_pred             EEEccCCCCccccHhhcCCCCCC-EEECCCCC----CcChH--HhccCCCCCEEEeeCcc
Confidence            99999997677777778888887 77776532    11211  56677888888887764

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=99.25  E-value=1.5e-13  Score=152.15  Aligned_cols=160  Identities=15%  Similarity=0.126  Sum_probs=93.9

Q ss_pred             cCCCCcccEEecCCCCchhcchhhhhcccccEEeecccc-------------ccccccccccCcccccccc-cCCccccc
Q 039689          216 IENLKHLRFLDLSTTKIEILRESINTLYNLHTLLLEDCR-------------RLKKLCKDMGNLTKLHHLN-NSNVGSLE  281 (763)
Q Consensus       216 ~~~l~~L~~L~L~~~~i~~lp~~~~~L~~L~~L~L~~~~-------------~l~~lp~~i~~L~~L~~L~-l~~~~~l~  281 (763)
                      +...++|+.|+|++|.++.+|++++++++|+.|++++|.             .....|..++.+++|+.|+ ++.+. +.
T Consensus       345 ~~~~~~L~~L~Ls~n~L~~Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l~~L~~L~~l~~n~-~~  423 (567)
T 1dce_A          345 SATDEQLFRCELSVEKSTVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAY-LD  423 (567)
T ss_dssp             CSTTTTSSSCCCCHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHH-HH
T ss_pred             cccCccceeccCChhhHHhhHHHHHHHHHHHHhccccchhhhhHHHHHHhcccccCCHHHHHHHHhcccCcchhhcc-cc
Confidence            367889999999999999999999999999999987753             3445667788999999998 55553 33


Q ss_pred             ccccCCCccCCCceeeecCcccccCcccchhhhhcCcccccceEEeeccCCCCCCccHHHHhhcCCCCCCc-eEEEeeeC
Q 039689          282 EMLMLKSLVHLQGTLEISRLENVKGVGDASEVQLNSKVNLKALYLQWGVRDAVEPKTETQVIDMLKPHQKL-ELTITGYG  360 (763)
Q Consensus       282 ~l~~l~~L~~L~~~L~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~l~~l~~L-~L~~~~~~  360 (763)
                      .++.          +.+..    +.+....      ...|+.|++++|.....         ..+..++.| .|.+.++.
T Consensus       424 ~L~~----------l~l~~----n~i~~l~------~~~L~~L~Ls~n~l~~l---------p~~~~l~~L~~L~Ls~N~  474 (567)
T 1dce_A          424 DLRS----------KFLLE----NSVLKME------YADVRVLHLAHKDLTVL---------CHLEQLLLVTHLDLSHNR  474 (567)
T ss_dssp             HHHH----------HHHHH----HHHHHHH------HTTCSEEECTTSCCSSC---------CCGGGGTTCCEEECCSSC
T ss_pred             hhhh----------hhhhc----ccccccC------ccCceEEEecCCCCCCC---------cCccccccCcEeecCccc
Confidence            3321          00000    0000000      01345555544432211         012222333 44444444


Q ss_pred             CCCCCCccCCCCCCCceEEEEeccCCCCCCCCCCCCCCCCcceecccC
Q 039689          361 GTKFPIWLGDSLFSKLMLLKFDNCGTCTSLPSVGQLPFLKDPVISGMG  408 (763)
Q Consensus       361 ~~~~p~~~~~~~~~~L~~L~l~~~~~~~~l~~l~~l~~L~~L~l~~~~  408 (763)
                      ...+|..++.  +++|+.|++++|... .+|.++.+++|+.|++++|.
T Consensus       475 l~~lp~~~~~--l~~L~~L~Ls~N~l~-~lp~l~~l~~L~~L~Ls~N~  519 (567)
T 1dce_A          475 LRALPPALAA--LRCLEVLQASDNALE-NVDGVANLPRLQELLLCNNR  519 (567)
T ss_dssp             CCCCCGGGGG--CTTCCEEECCSSCCC-CCGGGTTCSSCCEEECCSSC
T ss_pred             ccccchhhhc--CCCCCEEECCCCCCC-CCcccCCCCCCcEEECCCCC
Confidence            5556665554  667777777766433 35566666666666666654

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=99.23  E-value=5.6e-13  Score=141.67  Aligned_cols=214  Identities=16%  Similarity=0.114  Sum_probs=127.6

Q ss_pred             hhhccCCCCcccEEEecCCCCCc----cCccc-------CCCCcccEEecCCCCchh-----cchhhhhcccccEEeecc
Q 039689          189 VLQRLLNLPRLRVFSLRGYNIFE----LPKAI-------ENLKHLRFLDLSTTKIEI-----LRESINTLYNLHTLLLED  252 (763)
Q Consensus       189 ~~~~~~~l~~Lr~L~L~~~~i~~----lp~~~-------~~l~~L~~L~L~~~~i~~-----lp~~~~~L~~L~~L~L~~  252 (763)
                      +...+..+++|++|+|++|.+..    +|..+       ..+++|++|+|++|.++.     +|..+..+++|++|+|++
T Consensus        52 l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~  131 (386)
T 2ca6_A           52 LSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHN  131 (386)
T ss_dssp             HHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCS
T ss_pred             HHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCCcCCHHHHHHHHHHHHhCCCCCEEECcC
Confidence            44457789999999999986553    34333       788999999999998886     788999999999999999


Q ss_pred             ccccc----cccccccCc---------ccccccccCCccccc--ccc----cCCCccCCCceeeecCccccc-Ccccchh
Q 039689          253 CRRLK----KLCKDMGNL---------TKLHHLNNSNVGSLE--EML----MLKSLVHLQGTLEISRLENVK-GVGDASE  312 (763)
Q Consensus       253 ~~~l~----~lp~~i~~L---------~~L~~L~l~~~~~l~--~l~----~l~~L~~L~~~L~~~~~~~~~-~~~~~~~  312 (763)
                      |..-.    .++..+..+         ++|++|++++|. +.  .++    .+..+++|+ .|.+.+..-.. .......
T Consensus       132 n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~-l~~~~~~~l~~~l~~~~~L~-~L~L~~n~l~~~g~~~l~~  209 (386)
T 2ca6_A          132 NGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNR-LENGSMKEWAKTFQSHRLLH-TVKMVQNGIRPEGIEHLLL  209 (386)
T ss_dssp             SCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSC-CTGGGHHHHHHHHHHCTTCC-EEECCSSCCCHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCC-CCcHHHHHHHHHHHhCCCcC-EEECcCCCCCHhHHHHHHH
Confidence            64322    233334444         899999999987 43  233    133444555 55554421100 0000111


Q ss_pred             hhhcCcccccceEEeeccCCCCCCccHHHHhhcCCCCCCceEEEeeeCCCCCCCccCCCCCCCceEEEEeccCCCCC---
Q 039689          313 VQLNSKVNLKALYLQWGVRDAVEPKTETQVIDMLKPHQKLELTITGYGGTKFPIWLGDSLFSKLMLLKFDNCGTCTS---  389 (763)
Q Consensus       313 ~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~l~~l~~L~L~~~~~~~~~~p~~~~~~~~~~L~~L~l~~~~~~~~---  389 (763)
                      ..+..+++|+.|++++|......                         ...+|.++..  +++|+.|++++|.....   
T Consensus       210 ~~l~~~~~L~~L~Ls~n~l~~~g-------------------------~~~l~~~l~~--~~~L~~L~L~~n~i~~~~~~  262 (386)
T 2ca6_A          210 EGLAYCQELKVLDLQDNTFTHLG-------------------------SSALAIALKS--WPNLRELGLNDCLLSARGAA  262 (386)
T ss_dssp             TTGGGCTTCCEEECCSSCCHHHH-------------------------HHHHHHHGGG--CTTCCEEECTTCCCCHHHHH
T ss_pred             HHhhcCCCccEEECcCCCCCcHH-------------------------HHHHHHHHcc--CCCcCEEECCCCCCchhhHH
Confidence            24455566666666554211000                         0223334433  67788888888763322   


Q ss_pred             -CC-CC--CCCCCCCcceecccCCce----EeCccccCCCcCCCCCCcceeeccc
Q 039689          390 -LP-SV--GQLPFLKDPVISGMGRVK----IVGSEFYGSSCSVSFPSLETLFFVD  436 (763)
Q Consensus       390 -l~-~l--~~l~~L~~L~l~~~~~l~----~~~~~~~~~~~~~~f~~L~~L~l~~  436 (763)
                       ++ .+  +.+++|+.|++++|....    .+...+.     ..+++|++|++.+
T Consensus       263 ~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~-----~~l~~L~~L~l~~  312 (386)
T 2ca6_A          263 AVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVID-----EKMPDLLFLELNG  312 (386)
T ss_dssp             HHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHH-----HHCTTCCEEECTT
T ss_pred             HHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHH-----hcCCCceEEEccC
Confidence             22 23  447788888888765433    1221110     1267888888877

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=99.22  E-value=1.1e-11  Score=114.55  Aligned_cols=132  Identities=23%  Similarity=0.203  Sum_probs=89.0

Q ss_pred             CCCCcccEEEecCCCCC--ccCcccCCCCcccEEecCCCCchhcchhhhhcccccEEeecccccccc-ccccccCccccc
Q 039689          194 LNLPRLRVFSLRGYNIF--ELPKAIENLKHLRFLDLSTTKIEILRESINTLYNLHTLLLEDCRRLKK-LCKDMGNLTKLH  270 (763)
Q Consensus       194 ~~l~~Lr~L~L~~~~i~--~lp~~~~~l~~L~~L~L~~~~i~~lp~~~~~L~~L~~L~L~~~~~l~~-lp~~i~~L~~L~  270 (763)
                      ...++|++|++++|.++  .+|..+..+++|++|++++|.++.+ ..++.+++|++|++++| .+.. +|..++.+++|+
T Consensus        21 ~~~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~   98 (168)
T 2ell_A           21 RTPAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV-SNLPKLPKLKKLELSEN-RIFGGLDMLAEKLPNLT   98 (168)
T ss_dssp             SCTTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC-SSCCCCSSCCEEEEESC-CCCSCCCHHHHHCTTCC
T ss_pred             CCcccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh-hhhccCCCCCEEECcCC-cCchHHHHHHhhCCCCC
Confidence            34577888888888887  7787788888888888888888877 67788888888888885 4544 666666788888


Q ss_pred             ccccCCcccccccc---cCCCccCCCceeeecCcccccCcccchhhhhcCcccccceEEeecc
Q 039689          271 HLNNSNVGSLEEML---MLKSLVHLQGTLEISRLENVKGVGDASEVQLNSKVNLKALYLQWGV  330 (763)
Q Consensus       271 ~L~l~~~~~l~~l~---~l~~L~~L~~~L~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~  330 (763)
                      +|++++|. +..++   .+..+++|+ .+.+.+.. +..........+..+++|+.|++..|.
T Consensus        99 ~L~Ls~N~-l~~~~~~~~l~~l~~L~-~L~l~~N~-l~~~~~~~~~~~~~l~~L~~L~l~~n~  158 (168)
T 2ell_A           99 HLNLSGNK-LKDISTLEPLKKLECLK-SLDLFNCE-VTNLNDYRESVFKLLPQLTYLDGYDRE  158 (168)
T ss_dssp             EEECBSSS-CCSSGGGGGGSSCSCCC-EEECCSSG-GGTSTTHHHHHHTTCSSCCEETTEETT
T ss_pred             EEeccCCc-cCcchhHHHHhcCCCCC-EEEeeCCc-CcchHHHHHHHHHhCccCcEecCCCCC
Confidence            88888886 66553   355555565 55554421 111111112356666777777776653

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=99.21  E-value=2.7e-11  Score=118.04  Aligned_cols=129  Identities=22%  Similarity=0.271  Sum_probs=99.5

Q ss_pred             CcccEEEecCCCCCcc-CcccCCCCcccEEecCCCCchhcch-hhhhcccccEEeecccccccccccc-ccCcccccccc
Q 039689          197 PRLRVFSLRGYNIFEL-PKAIENLKHLRFLDLSTTKIEILRE-SINTLYNLHTLLLEDCRRLKKLCKD-MGNLTKLHHLN  273 (763)
Q Consensus       197 ~~Lr~L~L~~~~i~~l-p~~~~~l~~L~~L~L~~~~i~~lp~-~~~~L~~L~~L~L~~~~~l~~lp~~-i~~L~~L~~L~  273 (763)
                      ++|++|++++|.++.+ |..|..+++|++|+|++|.++.+|. .|+.+++|++|+|++ +.+..+|.. +..+++|++|+
T Consensus        40 ~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~-N~l~~l~~~~~~~l~~L~~L~  118 (229)
T 3e6j_A           40 TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGT-NQLTVLPSAVFDRLVHLKELF  118 (229)
T ss_dssp             TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS-SCCCCCCTTTTTTCTTCCEEE
T ss_pred             CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCC-CcCCccChhHhCcchhhCeEe
Confidence            7899999999999887 6788999999999999999998875 468999999999999 477777765 78899999999


Q ss_pred             cCCccccccccc-CCCccCCCceeeecCcccccCcccchhhhhcCcccccceEEeeccCC
Q 039689          274 NSNVGSLEEMLM-LKSLVHLQGTLEISRLENVKGVGDASEVQLNSKVNLKALYLQWGVRD  332 (763)
Q Consensus       274 l~~~~~l~~l~~-l~~L~~L~~~L~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~  332 (763)
                      +++|. +..+|. +..+.+|+ .|.+.+.    .+.......+..+++|+.|++..|...
T Consensus       119 Ls~N~-l~~lp~~~~~l~~L~-~L~L~~N----~l~~~~~~~~~~l~~L~~L~l~~N~~~  172 (229)
T 3e6j_A          119 MCCNK-LTELPRGIERLTHLT-HLALDQN----QLKSIPHGAFDRLSSLTHAYLFGNPWD  172 (229)
T ss_dssp             CCSSC-CCSCCTTGGGCTTCS-EEECCSS----CCCCCCTTTTTTCTTCCEEECTTSCBC
T ss_pred             ccCCc-ccccCcccccCCCCC-EEECCCC----cCCccCHHHHhCCCCCCEEEeeCCCcc
Confidence            99998 777764 55666666 6666542    222333345667777888877766443

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=99.18  E-value=3e-11  Score=126.73  Aligned_cols=80  Identities=24%  Similarity=0.211  Sum_probs=46.6

Q ss_pred             cccEEEecCCCCCccC-cccC-CCCcccEEecCCCCchhcc-hhhhhcccccEEeecccccccccccc-ccCcccccccc
Q 039689          198 RLRVFSLRGYNIFELP-KAIE-NLKHLRFLDLSTTKIEILR-ESINTLYNLHTLLLEDCRRLKKLCKD-MGNLTKLHHLN  273 (763)
Q Consensus       198 ~Lr~L~L~~~~i~~lp-~~~~-~l~~L~~L~L~~~~i~~lp-~~~~~L~~L~~L~L~~~~~l~~lp~~-i~~L~~L~~L~  273 (763)
                      .+++|+|++|.++.++ ..|. .+++|++|+|++|.|+.+| ..|.++++|++|+|++ +.+..+|.. |..+++|++|+
T Consensus        40 ~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~-N~l~~~~~~~~~~l~~L~~L~  118 (361)
T 2xot_A           40 YTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSS-NHLHTLDEFLFSDLQALEVLL  118 (361)
T ss_dssp             TCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS-SCCCEECTTTTTTCTTCCEEE
T ss_pred             CCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCC-CcCCcCCHHHhCCCcCCCEEE
Confidence            3566666666666654 3344 5666666666666666554 3456666666666666 345555443 56666666666


Q ss_pred             cCCcc
Q 039689          274 NSNVG  278 (763)
Q Consensus       274 l~~~~  278 (763)
                      +++|.
T Consensus       119 L~~N~  123 (361)
T 2xot_A          119 LYNNH  123 (361)
T ss_dssp             CCSSC
T ss_pred             CCCCc
Confidence            66665

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=99.17  E-value=1.2e-11  Score=111.58  Aligned_cols=100  Identities=22%  Similarity=0.285  Sum_probs=57.4

Q ss_pred             CCcccEEEecCCCCC--ccCcccCCCCcccEEecCCCCchhcchhhhhcccccEEeecccccccc-ccccccCccccccc
Q 039689          196 LPRLRVFSLRGYNIF--ELPKAIENLKHLRFLDLSTTKIEILRESINTLYNLHTLLLEDCRRLKK-LCKDMGNLTKLHHL  272 (763)
Q Consensus       196 l~~Lr~L~L~~~~i~--~lp~~~~~l~~L~~L~L~~~~i~~lp~~~~~L~~L~~L~L~~~~~l~~-lp~~i~~L~~L~~L  272 (763)
                      .++|+.|++++|.++  .+|..+..+++|++|++++|.++.+ ..++.+++|++|++++| .+.. +|..++.+++|++|
T Consensus        16 ~~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~n-~i~~~~~~~~~~l~~L~~L   93 (149)
T 2je0_A           16 PSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI-ANLPKLNKLKKLELSDN-RVSGGLEVLAEKCPNLTHL   93 (149)
T ss_dssp             GGGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC-TTCCCCTTCCEEECCSS-CCCSCTHHHHHHCTTCCEE
T ss_pred             CccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc-hhhhcCCCCCEEECCCC-cccchHHHHhhhCCCCCEE
Confidence            355666666666665  5566666666666666666666655 55666666666666663 3333 55555556666666


Q ss_pred             ccCCccccccc---ccCCCccCCCceeeec
Q 039689          273 NNSNVGSLEEM---LMLKSLVHLQGTLEIS  299 (763)
Q Consensus       273 ~l~~~~~l~~l---~~l~~L~~L~~~L~~~  299 (763)
                      ++++|. +..+   ..+..+++|+ .+.+.
T Consensus        94 ~ls~N~-i~~~~~~~~~~~l~~L~-~L~l~  121 (149)
T 2je0_A           94 NLSGNK-IKDLSTIEPLKKLENLK-SLDLF  121 (149)
T ss_dssp             ECTTSC-CCSHHHHGGGGGCTTCC-EEECT
T ss_pred             ECCCCc-CCChHHHHHHhhCCCCC-EEeCc
Confidence            666665 4443   2234444444 44443

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=99.17  E-value=6e-11  Score=114.70  Aligned_cols=128  Identities=16%  Similarity=0.178  Sum_probs=96.9

Q ss_pred             CcccEEEecCCCCCccC--cccCCCCcccEEecCCCCchhcch-hhhhcccccEEeecccccccccccc-ccCccccccc
Q 039689          197 PRLRVFSLRGYNIFELP--KAIENLKHLRFLDLSTTKIEILRE-SINTLYNLHTLLLEDCRRLKKLCKD-MGNLTKLHHL  272 (763)
Q Consensus       197 ~~Lr~L~L~~~~i~~lp--~~~~~l~~L~~L~L~~~~i~~lp~-~~~~L~~L~~L~L~~~~~l~~lp~~-i~~L~~L~~L  272 (763)
                      +.+++|++++|.++.++  ..|..+++|++|+|++|.++.++. .|+++++|++|+|++| .+..+|.. ++.+++|++|
T Consensus        32 ~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L  110 (220)
T 2v70_A           32 QYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSN-RLENVQHKMFKGLESLKTL  110 (220)
T ss_dssp             TTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS-CCCCCCGGGGTTCSSCCEE
T ss_pred             CCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCC-ccCccCHhHhcCCcCCCEE
Confidence            35689999999998873  458889999999999999988865 7899999999999984 56666554 8899999999


Q ss_pred             ccCCccccccccc--CCCccCCCceeeecCcccccCcccchhhhhcCcccccceEEeeccC
Q 039689          273 NNSNVGSLEEMLM--LKSLVHLQGTLEISRLENVKGVGDASEVQLNSKVNLKALYLQWGVR  331 (763)
Q Consensus       273 ~l~~~~~l~~l~~--l~~L~~L~~~L~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~  331 (763)
                      ++++|. +..++.  +..+.+|+ .|.+.+    +.+....+..+..+++|+.|++++|..
T Consensus       111 ~Ls~N~-l~~~~~~~~~~l~~L~-~L~L~~----N~l~~~~~~~~~~l~~L~~L~L~~N~l  165 (220)
T 2v70_A          111 MLRSNR-ITCVGNDSFIGLSSVR-LLSLYD----NQITTVAPGAFDTLHSLSTLNLLANPF  165 (220)
T ss_dssp             ECTTSC-CCCBCTTSSTTCTTCS-EEECTT----SCCCCBCTTTTTTCTTCCEEECCSCCE
T ss_pred             ECCCCc-CCeECHhHcCCCccCC-EEECCC----CcCCEECHHHhcCCCCCCEEEecCcCC
Confidence            999987 666632  66777777 676655    223334445677778888888877643

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=99.16  E-value=2.9e-11  Score=109.11  Aligned_cols=93  Identities=19%  Similarity=0.237  Sum_probs=82.4

Q ss_pred             hhhccCCCCcccEEEecCCCCCccCcccCCCCcccEEecCCCCchh-cchhhhhcccccEEeecccccccccc--ccccC
Q 039689          189 VLQRLLNLPRLRVFSLRGYNIFELPKAIENLKHLRFLDLSTTKIEI-LRESINTLYNLHTLLLEDCRRLKKLC--KDMGN  265 (763)
Q Consensus       189 ~~~~~~~l~~Lr~L~L~~~~i~~lp~~~~~l~~L~~L~L~~~~i~~-lp~~~~~L~~L~~L~L~~~~~l~~lp--~~i~~  265 (763)
                      ++..+..+++|++|++++|.++.+ ..++.+++|++|++++|.++. +|..++.+++|++|++++| .+..+|  ..++.
T Consensus        34 ~~~~~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ls~N-~i~~~~~~~~~~~  111 (149)
T 2je0_A           34 LEGLTDEFEELEFLSTINVGLTSI-ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLNLSGN-KIKDLSTIEPLKK  111 (149)
T ss_dssp             CCSCCTTCTTCCEEECTTSCCCCC-TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEECTTS-CCCSHHHHGGGGG
T ss_pred             HHHHHhhcCCCcEEECcCCCCCCc-hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEEECCCC-cCCChHHHHHHhh
Confidence            455668899999999999999988 789999999999999999998 7888899999999999995 677765  77999


Q ss_pred             cccccccccCCcccccccc
Q 039689          266 LTKLHHLNNSNVGSLEEML  284 (763)
Q Consensus       266 L~~L~~L~l~~~~~l~~l~  284 (763)
                      +++|++|++++|. +..++
T Consensus       112 l~~L~~L~l~~N~-l~~~~  129 (149)
T 2je0_A          112 LENLKSLDLFNCE-VTNLN  129 (149)
T ss_dssp             CTTCCEEECTTCG-GGGST
T ss_pred             CCCCCEEeCcCCc-ccchH
Confidence            9999999999997 65554

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=99.15  E-value=1.9e-11  Score=139.92  Aligned_cols=109  Identities=21%  Similarity=0.233  Sum_probs=90.7

Q ss_pred             hhhccCCCCcccEEEecCCCCCccCcccCCCCcccEEecCCCCchhcchhhhhcccccEEeeccccccccccccccCccc
Q 039689          189 VLQRLLNLPRLRVFSLRGYNIFELPKAIENLKHLRFLDLSTTKIEILRESINTLYNLHTLLLEDCRRLKKLCKDMGNLTK  268 (763)
Q Consensus       189 ~~~~~~~l~~Lr~L~L~~~~i~~lp~~~~~l~~L~~L~L~~~~i~~lp~~~~~L~~L~~L~L~~~~~l~~lp~~i~~L~~  268 (763)
                      .+..+..++.|++|+|++|.+..+|..+..+++|++|+|++|.++.+|..|++|++|++|+|++ +.+..+|..|++|++
T Consensus       216 ~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~-N~l~~lp~~~~~l~~  294 (727)
T 4b8c_D          216 PKDSKYDDQLWHALDLSNLQIFNISANIFKYDFLTRLYLNGNSLTELPAEIKNLSNLRVLDLSH-NRLTSLPAELGSCFQ  294 (727)
T ss_dssp             ------CCCCCCEEECTTSCCSCCCGGGGGCCSCSCCBCTTSCCSCCCGGGGGGTTCCEEECTT-SCCSSCCSSGGGGTT
T ss_pred             ChhhhccCCCCcEEECCCCCCCCCChhhcCCCCCCEEEeeCCcCcccChhhhCCCCCCEEeCcC-CcCCccChhhcCCCC
Confidence            3556688999999999999999999888899999999999999999999999999999999999 567799999999999


Q ss_pred             ccccccCCccccccccc-CCCccCCCceeeecC
Q 039689          269 LHHLNNSNVGSLEEMLM-LKSLVHLQGTLEISR  300 (763)
Q Consensus       269 L~~L~l~~~~~l~~l~~-l~~L~~L~~~L~~~~  300 (763)
                      |++|+|++|. +..+|. +..|++|+ .|.+.+
T Consensus       295 L~~L~L~~N~-l~~lp~~~~~l~~L~-~L~L~~  325 (727)
T 4b8c_D          295 LKYFYFFDNM-VTTLPWEFGNLCNLQ-FLGVEG  325 (727)
T ss_dssp             CSEEECCSSC-CCCCCSSTTSCTTCC-CEECTT
T ss_pred             CCEEECCCCC-CCccChhhhcCCCcc-EEeCCC
Confidence            9999999997 777764 55566665 555544

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=99.14  E-value=1.1e-10  Score=110.10  Aligned_cols=80  Identities=16%  Similarity=0.247  Sum_probs=42.9

Q ss_pred             cccEEEecCCCCCccCc--ccCCCCcccEEecCCCCchhc-chhhhhcccccEEeecccccccccccc-ccCcccccccc
Q 039689          198 RLRVFSLRGYNIFELPK--AIENLKHLRFLDLSTTKIEIL-RESINTLYNLHTLLLEDCRRLKKLCKD-MGNLTKLHHLN  273 (763)
Q Consensus       198 ~Lr~L~L~~~~i~~lp~--~~~~l~~L~~L~L~~~~i~~l-p~~~~~L~~L~~L~L~~~~~l~~lp~~-i~~L~~L~~L~  273 (763)
                      .+++|++++|.++.++.  .|+.+++|++|+|++|.++.+ |..|+++++|++|+|++ +.+..+|.. ++.+++|++|+
T Consensus        30 ~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~-N~l~~~~~~~~~~l~~L~~L~  108 (192)
T 1w8a_A           30 HTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGE-NKIKEISNKMFLGLHQLKTLN  108 (192)
T ss_dssp             TCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCS-CCCCEECSSSSTTCTTCCEEE
T ss_pred             CCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCC-CcCCccCHHHhcCCCCCCEEE
Confidence            55555555555555543  255555555555555555544 44555555555555555 234444332 55555555555


Q ss_pred             cCCcc
Q 039689          274 NSNVG  278 (763)
Q Consensus       274 l~~~~  278 (763)
                      +++|.
T Consensus       109 L~~N~  113 (192)
T 1w8a_A          109 LYDNQ  113 (192)
T ss_dssp             CCSSC
T ss_pred             CCCCc
Confidence            55554

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=99.13  E-value=1.7e-10  Score=108.84  Aligned_cols=81  Identities=28%  Similarity=0.417  Sum_probs=48.7

Q ss_pred             CcccEEEecCCCCCccCcccCCCCcccEEecCCCCchhcc-hhhhhcccccEEeeccccccccccc-cccCccccccccc
Q 039689          197 PRLRVFSLRGYNIFELPKAIENLKHLRFLDLSTTKIEILR-ESINTLYNLHTLLLEDCRRLKKLCK-DMGNLTKLHHLNN  274 (763)
Q Consensus       197 ~~Lr~L~L~~~~i~~lp~~~~~l~~L~~L~L~~~~i~~lp-~~~~~L~~L~~L~L~~~~~l~~lp~-~i~~L~~L~~L~l  274 (763)
                      ++|++|++++|.++.+|..|..+++|++|+|++|.|+.++ ..|.++++|++|+|++ +.+..+|. .|+.+++|++|++
T Consensus        31 ~~l~~L~L~~n~i~~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~-N~l~~i~~~~f~~l~~L~~L~L  109 (193)
T 2wfh_A           31 RDVTELYLDGNQFTLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSY-NRLRCIPPRTFDGLKSLRLLSL  109 (193)
T ss_dssp             TTCCEEECCSSCCCSCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS-SCCCBCCTTTTTTCTTCCEEEC
T ss_pred             CCCCEEECCCCcCchhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCC-CccCEeCHHHhCCCCCCCEEEC
Confidence            3566666666666666666666666666666666666553 3456666666666666 34444443 3666666666666


Q ss_pred             CCcc
Q 039689          275 SNVG  278 (763)
Q Consensus       275 ~~~~  278 (763)
                      ++|.
T Consensus       110 ~~N~  113 (193)
T 2wfh_A          110 HGND  113 (193)
T ss_dssp             CSSC
T ss_pred             CCCC
Confidence            6665

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=99.12  E-value=4e-11  Score=111.60  Aligned_cols=131  Identities=25%  Similarity=0.259  Sum_probs=87.0

Q ss_pred             cCCCCcccEEEecCCCCCccCcccCCCC-cccEEecCCCCchhcchhhhhcccccEEeeccccccccccccc-cCccccc
Q 039689          193 LLNLPRLRVFSLRGYNIFELPKAIENLK-HLRFLDLSTTKIEILRESINTLYNLHTLLLEDCRRLKKLCKDM-GNLTKLH  270 (763)
Q Consensus       193 ~~~l~~Lr~L~L~~~~i~~lp~~~~~l~-~L~~L~L~~~~i~~lp~~~~~L~~L~~L~L~~~~~l~~lp~~i-~~L~~L~  270 (763)
                      +..+.+|++|++++|.++.+|. +..+. +|++|++++|.++.+ +.++.+++|++|++++ +.+..+|+.+ +.+++|+
T Consensus        15 ~~~~~~L~~L~l~~n~l~~i~~-~~~~~~~L~~L~Ls~N~l~~~-~~l~~l~~L~~L~Ls~-N~l~~~~~~~~~~l~~L~   91 (176)
T 1a9n_A           15 YTNAVRDRELDLRGYKIPVIEN-LGATLDQFDAIDFSDNEIRKL-DGFPLLRRLKTLLVNN-NRICRIGEGLDQALPDLT   91 (176)
T ss_dssp             EECTTSCEEEECTTSCCCSCCC-GGGGTTCCSEEECCSSCCCEE-CCCCCCSSCCEEECCS-SCCCEECSCHHHHCTTCC
T ss_pred             cCCcCCceEEEeeCCCCchhHH-hhhcCCCCCEEECCCCCCCcc-cccccCCCCCEEECCC-CcccccCcchhhcCCCCC
Confidence            4567778888888888877754 44444 888888888888777 5777888888888888 4667777654 7788888


Q ss_pred             ccccCCccccccccc---CCCccCCCceeeecCcccccCcccchhhhhcCcccccceEEeec
Q 039689          271 HLNNSNVGSLEEMLM---LKSLVHLQGTLEISRLENVKGVGDASEVQLNSKVNLKALYLQWG  329 (763)
Q Consensus       271 ~L~l~~~~~l~~l~~---l~~L~~L~~~L~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~  329 (763)
                      +|++++|. +..+|.   +..+++|+ .+.+.+..- ..........+..+++|+.|+++.+
T Consensus        92 ~L~L~~N~-i~~~~~~~~l~~l~~L~-~L~l~~N~i-~~~~~~~~~~~~~l~~L~~Ld~~~n  150 (176)
T 1a9n_A           92 ELILTNNS-LVELGDLDPLASLKSLT-YLCILRNPV-TNKKHYRLYVIYKVPQVRVLDFQKV  150 (176)
T ss_dssp             EEECCSCC-CCCGGGGGGGGGCTTCC-EEECCSSGG-GGSTTHHHHHHHHCTTCSEETTEEC
T ss_pred             EEECCCCc-CCcchhhHhhhcCCCCC-EEEecCCCC-CCcHhHHHHHHHHCCccceeCCCcC
Confidence            88888886 666554   55556666 566554221 1111111123666777888877665

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=99.10  E-value=7.6e-11  Score=108.81  Aligned_cols=109  Identities=23%  Similarity=0.234  Sum_probs=93.2

Q ss_pred             hhhccCCCCcccEEEecCCCCCccCcccCCCCcccEEecCCCCchh-cchhhhhcccccEEeecccccccccc--ccccC
Q 039689          189 VLQRLLNLPRLRVFSLRGYNIFELPKAIENLKHLRFLDLSTTKIEI-LRESINTLYNLHTLLLEDCRRLKKLC--KDMGN  265 (763)
Q Consensus       189 ~~~~~~~l~~Lr~L~L~~~~i~~lp~~~~~l~~L~~L~L~~~~i~~-lp~~~~~L~~L~~L~L~~~~~l~~lp--~~i~~  265 (763)
                      ++..+..+++|++|++++|.++.+ ..|..+++|++|++++|.++. +|..++.+++|++|++++| .+..+|  ..++.
T Consensus        41 i~~~~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~l~~  118 (168)
T 2ell_A           41 IEGLTAEFVNLEFLSLINVGLISV-SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLNLSGN-KLKDISTLEPLKK  118 (168)
T ss_dssp             CSSCCGGGGGCCEEEEESSCCCCC-SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEEECBSS-SCCSSGGGGGGSS
T ss_pred             HHHHHHhCCCCCEEeCcCCCCCCh-hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEEeccCC-ccCcchhHHHHhc
Confidence            455567889999999999999988 889999999999999999998 7888889999999999995 788876  67999


Q ss_pred             cccccccccCCccccccccc-----CCCccCCCceeeecCc
Q 039689          266 LTKLHHLNNSNVGSLEEMLM-----LKSLVHLQGTLEISRL  301 (763)
Q Consensus       266 L~~L~~L~l~~~~~l~~l~~-----l~~L~~L~~~L~~~~~  301 (763)
                      +++|++|++++|. +..++.     +..+++|+ .+++.+.
T Consensus       119 l~~L~~L~l~~N~-l~~~~~~~~~~~~~l~~L~-~L~l~~n  157 (168)
T 2ell_A          119 LECLKSLDLFNCE-VTNLNDYRESVFKLLPQLT-YLDGYDR  157 (168)
T ss_dssp             CSCCCEEECCSSG-GGTSTTHHHHHHTTCSSCC-EETTEET
T ss_pred             CCCCCEEEeeCCc-CcchHHHHHHHHHhCccCc-EecCCCC
Confidence            9999999999998 777664     66777777 6666543

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=99.05  E-value=3.2e-10  Score=106.94  Aligned_cols=123  Identities=20%  Similarity=0.217  Sum_probs=101.4

Q ss_pred             cEEEecCCCCCccCcccCCCCcccEEecCCCCchhcchhhhhcccccEEeeccccccccccc-cccCcccccccccCCcc
Q 039689          200 RVFSLRGYNIFELPKAIENLKHLRFLDLSTTKIEILRESINTLYNLHTLLLEDCRRLKKLCK-DMGNLTKLHHLNNSNVG  278 (763)
Q Consensus       200 r~L~L~~~~i~~lp~~~~~l~~L~~L~L~~~~i~~lp~~~~~L~~L~~L~L~~~~~l~~lp~-~i~~L~~L~~L~l~~~~  278 (763)
                      ++++++++.++.+|..+.  .+|++|+|++|.++.+|..|..+++|++|+|++ +.+..++. .|.++++|++|++++|.
T Consensus        13 ~~l~~~~~~l~~ip~~~~--~~l~~L~L~~n~i~~ip~~~~~l~~L~~L~Ls~-N~i~~i~~~~f~~l~~L~~L~Ls~N~   89 (193)
T 2wfh_A           13 TVVRCSNKGLKVLPKGIP--RDVTELYLDGNQFTLVPKELSNYKHLTLIDLSN-NRISTLSNQSFSNMTQLLTLILSYNR   89 (193)
T ss_dssp             TEEECTTSCCSSCCSCCC--TTCCEEECCSSCCCSCCGGGGGCTTCCEEECCS-SCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred             CEEEcCCCCCCcCCCCCC--CCCCEEECCCCcCchhHHHhhcccCCCEEECCC-CcCCEeCHhHccCCCCCCEEECCCCc
Confidence            678999999999997664  689999999999999999999999999999999 56777764 59999999999999998


Q ss_pred             ccccccc--CCCccCCCceeeecCcccccCcccchhhhhcCcccccceEEeeccC
Q 039689          279 SLEEMLM--LKSLVHLQGTLEISRLENVKGVGDASEVQLNSKVNLKALYLQWGVR  331 (763)
Q Consensus       279 ~l~~l~~--l~~L~~L~~~L~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~  331 (763)
                       +..++.  +..+++|+ .|.+.+.    .+.......+..+++|+.|++.+|..
T Consensus        90 -l~~i~~~~f~~l~~L~-~L~L~~N----~l~~~~~~~~~~l~~L~~L~L~~N~~  138 (193)
T 2wfh_A           90 -LRCIPPRTFDGLKSLR-LLSLHGN----DISVVPEGAFNDLSALSHLAIGANPL  138 (193)
T ss_dssp             -CCBCCTTTTTTCTTCC-EEECCSS----CCCBCCTTTTTTCTTCCEEECCSSCE
T ss_pred             -cCEeCHHHhCCCCCCC-EEECCCC----CCCeeChhhhhcCccccEEEeCCCCe
Confidence             777765  77888888 8887662    33344445677889999999988754

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=99.05  E-value=2.1e-10  Score=127.06  Aligned_cols=82  Identities=27%  Similarity=0.357  Sum_probs=57.1

Q ss_pred             cccEEEecCCCCCccCcccCCCCcccEEecCCCCchhcchhhhhcccccEEeeccccccccccccccCcccccccccCCc
Q 039689          198 RLRVFSLRGYNIFELPKAIENLKHLRFLDLSTTKIEILRESINTLYNLHTLLLEDCRRLKKLCKDMGNLTKLHHLNNSNV  277 (763)
Q Consensus       198 ~Lr~L~L~~~~i~~lp~~~~~l~~L~~L~L~~~~i~~lp~~~~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l~~~  277 (763)
                      .|++|++++|.++.+|. |+.+++|++|+|++|.++.+|..|+++++|++|+|++ +.+..+| .++.+++|++|++++|
T Consensus       442 ~L~~L~Ls~n~l~~lp~-~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~-N~l~~lp-~l~~l~~L~~L~Ls~N  518 (567)
T 1dce_A          442 DVRVLHLAHKDLTVLCH-LEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASD-NALENVD-GVANLPRLQELLLCNN  518 (567)
T ss_dssp             TCSEEECTTSCCSSCCC-GGGGTTCCEEECCSSCCCCCCGGGGGCTTCCEEECCS-SCCCCCG-GGTTCSSCCEEECCSS
T ss_pred             CceEEEecCCCCCCCcC-ccccccCcEeecCcccccccchhhhcCCCCCEEECCC-CCCCCCc-ccCCCCCCcEEECCCC
Confidence            46677777777777765 7777777777777777777777777777777777777 4566666 5777777777777777


Q ss_pred             cccccc
Q 039689          278 GSLEEM  283 (763)
Q Consensus       278 ~~l~~l  283 (763)
                      . +..+
T Consensus       519 ~-l~~~  523 (567)
T 1dce_A          519 R-LQQS  523 (567)
T ss_dssp             C-CCSS
T ss_pred             C-CCCC
Confidence            6 4444

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=99.05  E-value=6e-10  Score=116.81  Aligned_cols=164  Identities=20%  Similarity=0.231  Sum_probs=109.8

Q ss_pred             eeeeccCCCcccccchhhhcCCCCcceEEEecCccccccCC--CC-CCCCccEEEEccCCCCCCCchhhhcCCCCCcceE
Q 039689          560 TVKIEDCNALESLPEAWMHNSNSSLESLKIRSCNSLVSFPD--FA-LPSQLRTVTIKGCDALESLPEAWMQNSSTSLESL  636 (763)
Q Consensus       560 ~L~l~~~~~l~~l~~~~~~~~l~~L~~L~l~~c~~l~~~~~--~~-~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L  636 (763)
                      .++.++ +.++.+|..+    .+.++.|++++|. ++.++.  +. .+++|++|++++| .++.++...+ ..+++|+.|
T Consensus        22 ~l~c~~-~~l~~iP~~~----~~~l~~L~Ls~N~-l~~l~~~~~~~~l~~L~~L~L~~N-~i~~i~~~~~-~~l~~L~~L   93 (361)
T 2xot_A           22 ILSCSK-QQLPNVPQSL----PSYTALLDLSHNN-LSRLRAEWTPTRLTNLHSLLLSHN-HLNFISSEAF-VPVPNLRYL   93 (361)
T ss_dssp             EEECCS-SCCSSCCSSC----CTTCSEEECCSSC-CCEECTTSSSSCCTTCCEEECCSS-CCCEECTTTT-TTCTTCCEE
T ss_pred             EEEeCC-CCcCccCccC----CCCCCEEECCCCC-CCccChhhhhhcccccCEEECCCC-cCCccChhhc-cCCCCCCEE
Confidence            344443 6788888763    4568899998765 555554  33 6788999999988 4555554322 788899999


Q ss_pred             eeccCCCccccccccCCCCCcEEEEecCCCCCCCccceEEecCCCCCccccCC----CCCCcCeEeeccCCCCccccCCC
Q 039689          637 AIDSCDSLTYIARIQLPPSLKRLIIFRCDNLRFNSLRKLKISGGCPDLVSSPR----FPASLTELKISDMPSLERLSSIG  712 (763)
Q Consensus       637 ~l~~c~~l~~l~~~~~~~~L~~L~l~~c~~l~~~~L~~L~l~~~~~~l~~~~~----~~~~L~~L~l~~~~~l~~ip~~~  712 (763)
                      ++++| .++.++...+.              .+.+|+.|++++  +.+..++.    .+++|++|++++ +.++.+|...
T Consensus        94 ~Ls~N-~l~~~~~~~~~--------------~l~~L~~L~L~~--N~i~~~~~~~~~~l~~L~~L~L~~-N~l~~l~~~~  155 (361)
T 2xot_A           94 DLSSN-HLHTLDEFLFS--------------DLQALEVLLLYN--NHIVVVDRNAFEDMAQLQKLYLSQ-NQISRFPVEL  155 (361)
T ss_dssp             ECCSS-CCCEECTTTTT--------------TCTTCCEEECCS--SCCCEECTTTTTTCTTCCEEECCS-SCCCSCCGGG
T ss_pred             ECCCC-cCCcCCHHHhC--------------CCcCCCEEECCC--CcccEECHHHhCCcccCCEEECCC-CcCCeeCHHH
Confidence            99988 67777655442              234555555554  33444432    467899999998 6888888655


Q ss_pred             ----CCCCCcCceecccCCCCccccCCCc--ccc--cceeeeccCh
Q 039689          713 ----ENLTSLKFLDLDNCPKLKYFSKQGL--PKS--LLRLIIDECP  750 (763)
Q Consensus       713 ----~~l~~L~~L~l~~c~~L~~l~~~~~--~~~--L~~L~i~~C~  750 (763)
                          ..+++|+.|+++++ +++.++...+  .++  ++.|+++++|
T Consensus       156 ~~~~~~l~~L~~L~L~~N-~l~~l~~~~~~~l~~~~l~~l~l~~N~  200 (361)
T 2xot_A          156 IKDGNKLPKLMLLDLSSN-KLKKLPLTDLQKLPAWVKNGLYLHNNP  200 (361)
T ss_dssp             TC----CTTCCEEECCSS-CCCCCCHHHHHHSCHHHHTTEECCSSC
T ss_pred             hcCcccCCcCCEEECCCC-CCCccCHHHhhhccHhhcceEEecCCC
Confidence                46899999999985 6888775221  122  5788888754

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=99.05  E-value=4e-11  Score=137.15  Aligned_cols=65  Identities=25%  Similarity=0.216  Sum_probs=37.7

Q ss_pred             CcccCCCCcccEEecCCCCchhcchhhhhcccccEEeeccccccccccccccCcccccccccCCcc
Q 039689          213 PKAIENLKHLRFLDLSTTKIEILRESINTLYNLHTLLLEDCRRLKKLCKDMGNLTKLHHLNNSNVG  278 (763)
Q Consensus       213 p~~~~~l~~L~~L~L~~~~i~~lp~~~~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l~~~~  278 (763)
                      |..|..+.+|++|+|++|.+..+|..+.++++|++|+|++ +.+..+|..|++|++|++|+|++|.
T Consensus       217 ~~~~~~l~~L~~L~Ls~n~l~~l~~~~~~l~~L~~L~Ls~-N~l~~lp~~~~~l~~L~~L~Ls~N~  281 (727)
T 4b8c_D          217 KDSKYDDQLWHALDLSNLQIFNISANIFKYDFLTRLYLNG-NSLTELPAEIKNLSNLRVLDLSHNR  281 (727)
T ss_dssp             -----CCCCCCEEECTTSCCSCCCGGGGGCCSCSCCBCTT-SCCSCCCGGGGGGTTCCEEECTTSC
T ss_pred             hhhhccCCCCcEEECCCCCCCCCChhhcCCCCCCEEEeeC-CcCcccChhhhCCCCCCEEeCcCCc
Confidence            4556666666666666666666666666666666666666 3455666666666666666666665

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=99.01  E-value=7.1e-12  Score=119.25  Aligned_cols=106  Identities=21%  Similarity=0.248  Sum_probs=88.8

Q ss_pred             hhccCCCCcccEEEecCCCCCccCcccCCCCcccEEecCCCCchhcchhhhhcccccEEeeccccccccccccccCcccc
Q 039689          190 LQRLLNLPRLRVFSLRGYNIFELPKAIENLKHLRFLDLSTTKIEILRESINTLYNLHTLLLEDCRRLKKLCKDMGNLTKL  269 (763)
Q Consensus       190 ~~~~~~l~~Lr~L~L~~~~i~~lp~~~~~l~~L~~L~L~~~~i~~lp~~~~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L  269 (763)
                      +..+..+++|++|++++|.++.+| .+..+++|++|++++|.++.+|..++.+++|++|++++ +.+..+| .++.+++|
T Consensus        41 ~~~~~~l~~L~~L~ls~n~l~~l~-~~~~l~~L~~L~l~~n~l~~l~~~~~~~~~L~~L~L~~-N~l~~l~-~~~~l~~L  117 (198)
T 1ds9_A           41 DATLSTLKACKHLALSTNNIEKIS-SLSGMENLRILSLGRNLIKKIENLDAVADTLEELWISY-NQIASLS-GIEKLVNL  117 (198)
T ss_dssp             HHHHHHTTTCSEEECSEEEESCCC-CHHHHTTCCEEEEEEEEECSCSSHHHHHHHCSEEEEEE-EECCCHH-HHHHHHHS
T ss_pred             hHHHhcCCCCCEEECCCCCCcccc-ccccCCCCCEEECCCCCcccccchhhcCCcCCEEECcC-CcCCcCC-ccccCCCC
Confidence            346677899999999999998888 88999999999999999999999889999999999999 4777787 58899999


Q ss_pred             cccccCCccccccccc---CCCccCCCceeeecC
Q 039689          270 HHLNNSNVGSLEEMLM---LKSLVHLQGTLEISR  300 (763)
Q Consensus       270 ~~L~l~~~~~l~~l~~---l~~L~~L~~~L~~~~  300 (763)
                      ++|++++|. +..++.   +..+++|+ .+.+.+
T Consensus       118 ~~L~l~~N~-i~~~~~~~~l~~l~~L~-~L~l~~  149 (198)
T 1ds9_A          118 RVLYMSNNK-ITNWGEIDKLAALDKLE-DLLLAG  149 (198)
T ss_dssp             SEEEESEEE-CCCHHHHHHHTTTTTCS-EEEECS
T ss_pred             CEEECCCCc-CCchhHHHHHhcCCCCC-EEEecC
Confidence            999999987 665443   66677776 666655

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=99.01  E-value=3.3e-12  Score=121.60  Aligned_cols=83  Identities=25%  Similarity=0.267  Sum_probs=69.7

Q ss_pred             cccEEEecCC--CCCccCcccCCCCcccEEecCCCCchhcchhhhhcccccEEeeccccccccccccccCcccccccccC
Q 039689          198 RLRVFSLRGY--NIFELPKAIENLKHLRFLDLSTTKIEILRESINTLYNLHTLLLEDCRRLKKLCKDMGNLTKLHHLNNS  275 (763)
Q Consensus       198 ~Lr~L~L~~~--~i~~lp~~~~~l~~L~~L~L~~~~i~~lp~~~~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l~  275 (763)
                      .++...+++.  .++.+|..|..+++|++|++++|.++.+| .++.+++|++|++++ +.+..+|..+..+++|++|+++
T Consensus        24 ~l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~l~~l~-~~~~l~~L~~L~l~~-n~l~~l~~~~~~~~~L~~L~L~  101 (198)
T 1ds9_A           24 EAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEKIS-SLSGMENLRILSLGR-NLIKKIENLDAVADTLEELWIS  101 (198)
T ss_dssp             TCSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEEESCCC-CHHHHTTCCEEEEEE-EEECSCSSHHHHHHHCSEEEEE
T ss_pred             chheeEeccccCcHhhhhHHHhcCCCCCEEECCCCCCcccc-ccccCCCCCEEECCC-CCcccccchhhcCCcCCEEECc
Confidence            4566666655  46667778999999999999999999998 999999999999999 5788899888888999999999


Q ss_pred             Cccccccc
Q 039689          276 NVGSLEEM  283 (763)
Q Consensus       276 ~~~~l~~l  283 (763)
                      +|. +..+
T Consensus       102 ~N~-l~~l  108 (198)
T 1ds9_A          102 YNQ-IASL  108 (198)
T ss_dssp             EEE-CCCH
T ss_pred             CCc-CCcC
Confidence            987 4433

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=98.98  E-value=7.6e-10  Score=104.39  Aligned_cols=125  Identities=17%  Similarity=0.191  Sum_probs=102.5

Q ss_pred             cEEEecCCCCCccCcccCCCCcccEEecCCCCchhcchh--hhhcccccEEeeccccccccc-cccccCcccccccccCC
Q 039689          200 RVFSLRGYNIFELPKAIENLKHLRFLDLSTTKIEILRES--INTLYNLHTLLLEDCRRLKKL-CKDMGNLTKLHHLNNSN  276 (763)
Q Consensus       200 r~L~L~~~~i~~lp~~~~~l~~L~~L~L~~~~i~~lp~~--~~~L~~L~~L~L~~~~~l~~l-p~~i~~L~~L~~L~l~~  276 (763)
                      ++++++++.++.+|..+..  +|++|++++|.++.+|..  |+.+++|++|+|++| .+..+ |..|+.+++|++|++++
T Consensus        11 ~~l~~s~~~l~~ip~~~~~--~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~Ls~   87 (192)
T 1w8a_A           11 TTVDCTGRGLKEIPRDIPL--HTTELLLNDNELGRISSDGLFGRLPHLVKLELKRN-QLTGIEPNAFEGASHIQELQLGE   87 (192)
T ss_dssp             TEEECTTSCCSSCCSCCCT--TCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSS-CCCCBCTTTTTTCTTCCEEECCS
T ss_pred             CEEEcCCCCcCcCccCCCC--CCCEEECCCCcCCccCCccccccCCCCCEEECCCC-CCCCcCHhHcCCcccCCEEECCC
Confidence            7899999999999987754  999999999999988764  899999999999995 56555 67799999999999999


Q ss_pred             ccccccccc--CCCccCCCceeeecCcccccCcccchhhhhcCcccccceEEeeccCCC
Q 039689          277 VGSLEEMLM--LKSLVHLQGTLEISRLENVKGVGDASEVQLNSKVNLKALYLQWGVRDA  333 (763)
Q Consensus       277 ~~~l~~l~~--l~~L~~L~~~L~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~  333 (763)
                      |. +..++.  +..+++|+ .|++.+.    .+....+..+..+++|+.|++++|....
T Consensus        88 N~-l~~~~~~~~~~l~~L~-~L~L~~N----~l~~~~~~~~~~l~~L~~L~L~~N~l~c  140 (192)
T 1w8a_A           88 NK-IKEISNKMFLGLHQLK-TLNLYDN----QISCVMPGSFEHLNSLTSLNLASNPFNC  140 (192)
T ss_dssp             CC-CCEECSSSSTTCTTCC-EEECCSS----CCCEECTTSSTTCTTCCEEECTTCCBCC
T ss_pred             Cc-CCccCHHHhcCCCCCC-EEECCCC----cCCeeCHHHhhcCCCCCEEEeCCCCccC
Confidence            98 777665  77888888 8887662    3444445677888999999998886543

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=98.98  E-value=3.4e-10  Score=105.24  Aligned_cols=101  Identities=18%  Similarity=0.276  Sum_probs=86.5

Q ss_pred             CCcccEEEecCCCCCccCcccCCCCcccEEecCCCCchhcchhh-hhcccccEEeeccccccccccc--cccCccccccc
Q 039689          196 LPRLRVFSLRGYNIFELPKAIENLKHLRFLDLSTTKIEILRESI-NTLYNLHTLLLEDCRRLKKLCK--DMGNLTKLHHL  272 (763)
Q Consensus       196 l~~Lr~L~L~~~~i~~lp~~~~~l~~L~~L~L~~~~i~~lp~~~-~~L~~L~~L~L~~~~~l~~lp~--~i~~L~~L~~L  272 (763)
                      .++|++|++++|.++.+ ..|..+++|++|+|++|.++.+|+.+ +.+++|++|++++ +.+..+|.  .++.+++|++|
T Consensus        41 ~~~L~~L~Ls~N~l~~~-~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~-N~i~~~~~~~~l~~l~~L~~L  118 (176)
T 1a9n_A           41 LDQFDAIDFSDNEIRKL-DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELILTN-NSLVELGDLDPLASLKSLTYL  118 (176)
T ss_dssp             TTCCSEEECCSSCCCEE-CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCEEECCS-CCCCCGGGGGGGGGCTTCCEE
T ss_pred             CCCCCEEECCCCCCCcc-cccccCCCCCEEECCCCcccccCcchhhcCCCCCEEECCC-CcCCcchhhHhhhcCCCCCEE
Confidence            34999999999999988 78999999999999999999998655 9999999999999 57888887  79999999999


Q ss_pred             ccCCccccccccc-----CCCccCCCceeeecC
Q 039689          273 NNSNVGSLEEMLM-----LKSLVHLQGTLEISR  300 (763)
Q Consensus       273 ~l~~~~~l~~l~~-----l~~L~~L~~~L~~~~  300 (763)
                      ++++|. +..+|.     +..+++|+ .+++..
T Consensus       119 ~l~~N~-i~~~~~~~~~~~~~l~~L~-~Ld~~~  149 (176)
T 1a9n_A          119 CILRNP-VTNKKHYRLYVIYKVPQVR-VLDFQK  149 (176)
T ss_dssp             ECCSSG-GGGSTTHHHHHHHHCTTCS-EETTEE
T ss_pred             EecCCC-CCCcHhHHHHHHHHCCccc-eeCCCc
Confidence            999998 777765     56667776 555543

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=98.95  E-value=8.4e-10  Score=102.05  Aligned_cols=81  Identities=25%  Similarity=0.348  Sum_probs=63.0

Q ss_pred             CcccEEEecCCCCCcc-CcccCCCCcccEEecCCCCchhcchh-hhhcccccEEeecccccccccccc-ccCcccccccc
Q 039689          197 PRLRVFSLRGYNIFEL-PKAIENLKHLRFLDLSTTKIEILRES-INTLYNLHTLLLEDCRRLKKLCKD-MGNLTKLHHLN  273 (763)
Q Consensus       197 ~~Lr~L~L~~~~i~~l-p~~~~~l~~L~~L~L~~~~i~~lp~~-~~~L~~L~~L~L~~~~~l~~lp~~-i~~L~~L~~L~  273 (763)
                      ++|++|+|++|.++.+ |..|..+++|++|+|++|.++.+|.. |+++++|++|+|++ +.+..+|.. ++.+++|++|+
T Consensus        33 ~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~-N~l~~l~~~~~~~l~~L~~L~  111 (174)
T 2r9u_A           33 TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLND-NHLKSIPRGAFDNLKSLTHIY  111 (174)
T ss_dssp             TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS-SCCCCCCTTTTTTCTTCSEEE
T ss_pred             CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCC-CccceeCHHHhccccCCCEEE
Confidence            6778888888888777 56778888888888888888877665 47788888888887 567777765 77788888888


Q ss_pred             cCCcc
Q 039689          274 NSNVG  278 (763)
Q Consensus       274 l~~~~  278 (763)
                      +++|.
T Consensus       112 L~~N~  116 (174)
T 2r9u_A          112 LYNNP  116 (174)
T ss_dssp             CCSSC
T ss_pred             eCCCC
Confidence            88876

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=98.94  E-value=2.9e-09  Score=99.04  Aligned_cols=86  Identities=24%  Similarity=0.376  Sum_probs=62.6

Q ss_pred             CcccEEEecCCCCCccC-cccCCCCcccEEecCCCCchhcchh-hhhcccccEEeecccccccccccc-ccCcccccccc
Q 039689          197 PRLRVFSLRGYNIFELP-KAIENLKHLRFLDLSTTKIEILRES-INTLYNLHTLLLEDCRRLKKLCKD-MGNLTKLHHLN  273 (763)
Q Consensus       197 ~~Lr~L~L~~~~i~~lp-~~~~~l~~L~~L~L~~~~i~~lp~~-~~~L~~L~~L~L~~~~~l~~lp~~-i~~L~~L~~L~  273 (763)
                      ++|++|++++|.++.+| ..|..+++|++|++++|.++.+|.. ++.+++|++|++++ +.+..+|.. ++.+++|++|+
T Consensus        28 ~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~-N~l~~~~~~~~~~l~~L~~L~  106 (177)
T 2o6r_A           28 SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHE-NKLQSLPNGVFDKLTQLKELA  106 (177)
T ss_dssp             TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCS-SCCCCCCTTTTTTCTTCCEEE
T ss_pred             CCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCC-CCccccCHHHhhCCcccCEEE
Confidence            57788888888877775 4567788888888888888777644 57788888888887 456666654 67788888888


Q ss_pred             cCCcccccccc
Q 039689          274 NSNVGSLEEML  284 (763)
Q Consensus       274 l~~~~~l~~l~  284 (763)
                      +++|. +..++
T Consensus       107 l~~N~-l~~~~  116 (177)
T 2o6r_A          107 LDTNQ-LKSVP  116 (177)
T ss_dssp             CCSSC-CSCCC
T ss_pred             CcCCc-ceEeC
Confidence            88776 54444

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=98.91  E-value=2.3e-09  Score=98.80  Aligned_cols=76  Identities=22%  Similarity=0.295  Sum_probs=36.7

Q ss_pred             cEEEecCCCCCccCcccCCCCcccEEecCCCCchhc-chhhhhcccccEEeecccccccccccc-ccCcccccccccCCc
Q 039689          200 RVFSLRGYNIFELPKAIENLKHLRFLDLSTTKIEIL-RESINTLYNLHTLLLEDCRRLKKLCKD-MGNLTKLHHLNNSNV  277 (763)
Q Consensus       200 r~L~L~~~~i~~lp~~~~~l~~L~~L~L~~~~i~~l-p~~~~~L~~L~~L~L~~~~~l~~lp~~-i~~L~~L~~L~l~~~  277 (763)
                      +++++++|.++.+|..+.  ++|++|+|++|.|+.+ |..|+.+++|++|+|++ +.+..+|.. ++.+++|++|++++|
T Consensus        12 ~~l~~s~n~l~~ip~~~~--~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~-N~l~~l~~~~f~~l~~L~~L~L~~N   88 (170)
T 3g39_A           12 TTVDCSGKSLASVPTGIP--TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDN-NQLTVLPAGVFDKLTQLTQLSLNDN   88 (170)
T ss_dssp             TEEECTTSCCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCS-SCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred             CEEEeCCCCcCccCccCC--CCCcEEEcCCCcCCccChhhhcCcccCCEEECCC-CCcCccChhhccCCCCCCEEECCCC
Confidence            445555555555544332  4455555555555544 33445555555555555 234444433 345555555555554


Q ss_pred             c
Q 039689          278 G  278 (763)
Q Consensus       278 ~  278 (763)
                      .
T Consensus        89 ~   89 (170)
T 3g39_A           89 Q   89 (170)
T ss_dssp             C
T ss_pred             c
Confidence            4

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=98.91  E-value=2.5e-09  Score=98.89  Aligned_cols=83  Identities=19%  Similarity=0.289  Sum_probs=73.3

Q ss_pred             ccEEEecCCCCCccCcccCCCCcccEEecCCCCchhc-chhhhhcccccEEeecccccccccccc-ccCcccccccccCC
Q 039689          199 LRVFSLRGYNIFELPKAIENLKHLRFLDLSTTKIEIL-RESINTLYNLHTLLLEDCRRLKKLCKD-MGNLTKLHHLNNSN  276 (763)
Q Consensus       199 Lr~L~L~~~~i~~lp~~~~~l~~L~~L~L~~~~i~~l-p~~~~~L~~L~~L~L~~~~~l~~lp~~-i~~L~~L~~L~l~~  276 (763)
                      -++++++++.++.+|..+.  ++|++|+|++|.++.+ |..|+++++|++|+|++ +.+..+|.. ++++++|++|++++
T Consensus        14 ~~~l~~~~n~l~~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~-N~l~~i~~~~~~~l~~L~~L~L~~   90 (174)
T 2r9u_A           14 QTLVNCQNIRLASVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNS-NKLTAIPTGVFDKLTQLTQLDLND   90 (174)
T ss_dssp             SSEEECCSSCCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCS-SCCCCCCTTTTTTCTTCCEEECCS
T ss_pred             CcEEEeCCCCCCccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCC-CCCCccChhHhCCcchhhEEECCC
Confidence            3789999999999998775  8999999999999988 66889999999999999 588889877 68999999999999


Q ss_pred             ccccccccc
Q 039689          277 VGSLEEMLM  285 (763)
Q Consensus       277 ~~~l~~l~~  285 (763)
                      |. +..++.
T Consensus        91 N~-l~~l~~   98 (174)
T 2r9u_A           91 NH-LKSIPR   98 (174)
T ss_dssp             SC-CCCCCT
T ss_pred             Cc-cceeCH
Confidence            97 665543

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=98.89  E-value=3.3e-09  Score=98.60  Aligned_cols=125  Identities=18%  Similarity=0.257  Sum_probs=90.9

Q ss_pred             ccEEEecCCCCCccCcccCCCCcccEEecCCCCchhcch-hhhhcccccEEeecccccccccccc-ccCcccccccccCC
Q 039689          199 LRVFSLRGYNIFELPKAIENLKHLRFLDLSTTKIEILRE-SINTLYNLHTLLLEDCRRLKKLCKD-MGNLTKLHHLNNSN  276 (763)
Q Consensus       199 Lr~L~L~~~~i~~lp~~~~~l~~L~~L~L~~~~i~~lp~-~~~~L~~L~~L~L~~~~~l~~lp~~-i~~L~~L~~L~l~~  276 (763)
                      .+.+++++++++.+|..+.  ++|++|++++|.++.+|. .++.+++|++|++++ +.+..+|.. ++.+++|++|++++
T Consensus         9 ~~~l~~~~~~l~~~p~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~-n~l~~~~~~~~~~l~~L~~L~l~~   85 (177)
T 2o6r_A            9 GTEIRCNSKGLTSVPTGIP--SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQ-NQIQSLPDGVFDKLTKLTILYLHE   85 (177)
T ss_dssp             TTEEECCSSCCSSCCTTCC--TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCS-SCCCCCCTTTTTTCTTCCEEECCS
T ss_pred             CCEEEecCCCCccCCCCCC--CCCcEEEeCCCcccEeCHHHhcCcccccEEECCC-CcceEeChhHccCCCccCEEECCC
Confidence            4678888888888876543  688888888888887765 458888888888888 466777655 68888888888888


Q ss_pred             ccccccccc--CCCccCCCceeeecCcccccCcccchhhhhcCcccccceEEeeccCC
Q 039689          277 VGSLEEMLM--LKSLVHLQGTLEISRLENVKGVGDASEVQLNSKVNLKALYLQWGVRD  332 (763)
Q Consensus       277 ~~~l~~l~~--l~~L~~L~~~L~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~  332 (763)
                      |. +..++.  +..+++|+ .+++.+.    .+.......+..+++|+.|++++|...
T Consensus        86 N~-l~~~~~~~~~~l~~L~-~L~l~~N----~l~~~~~~~~~~l~~L~~L~l~~N~~~  137 (177)
T 2o6r_A           86 NK-LQSLPNGVFDKLTQLK-ELALDTN----QLKSVPDGIFDRLTSLQKIWLHTNPWD  137 (177)
T ss_dssp             SC-CCCCCTTTTTTCTTCC-EEECCSS----CCSCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred             CC-ccccCHHHhhCCcccC-EEECcCC----cceEeCHHHhcCCcccCEEEecCCCee
Confidence            87 776665  56777777 7777653    222333444667788888888877543

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=98.85  E-value=3.1e-09  Score=97.83  Aligned_cols=82  Identities=28%  Similarity=0.399  Sum_probs=74.9

Q ss_pred             CCcccEEEecCCCCCcc-CcccCCCCcccEEecCCCCchhcchh-hhhcccccEEeecccccccccccc-ccCccccccc
Q 039689          196 LPRLRVFSLRGYNIFEL-PKAIENLKHLRFLDLSTTKIEILRES-INTLYNLHTLLLEDCRRLKKLCKD-MGNLTKLHHL  272 (763)
Q Consensus       196 l~~Lr~L~L~~~~i~~l-p~~~~~l~~L~~L~L~~~~i~~lp~~-~~~L~~L~~L~L~~~~~l~~lp~~-i~~L~~L~~L  272 (763)
                      .+.|++|+|++|.++.+ |..|..+++|++|+|++|.++.+|.. |..+++|++|+|++ +.+..+|.. ++.+++|++|
T Consensus        29 ~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~-N~l~~~~~~~~~~l~~L~~L  107 (170)
T 3g39_A           29 PTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLND-NQLKSIPRGAFDNLKSLTHI  107 (170)
T ss_dssp             CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCS-SCCCCCCTTTTTTCTTCCEE
T ss_pred             CCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCC-CccCEeCHHHhcCCCCCCEE
Confidence            37899999999999998 67899999999999999999999765 69999999999999 578888875 8999999999


Q ss_pred             ccCCcc
Q 039689          273 NNSNVG  278 (763)
Q Consensus       273 ~l~~~~  278 (763)
                      ++++|.
T Consensus       108 ~L~~N~  113 (170)
T 3g39_A          108 WLLNNP  113 (170)
T ss_dssp             ECCSSC
T ss_pred             EeCCCC
Confidence            999997

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=98.71  E-value=2e-08  Score=103.79  Aligned_cols=87  Identities=13%  Similarity=0.184  Sum_probs=59.2

Q ss_pred             cceeeeccCCCcccccchhhhcCCCCcceEEEecCccccccCC--CCCCCCcc-EEEEccCCCCCCCchhhhcCCCCCcc
Q 039689          558 LRTVKIEDCNALESLPEAWMHNSNSSLESLKIRSCNSLVSFPD--FALPSQLR-TVTIKGCDALESLPEAWMQNSSTSLE  634 (763)
Q Consensus       558 L~~L~l~~~~~l~~l~~~~~~~~l~~L~~L~l~~c~~l~~~~~--~~~~~~L~-~L~l~~~~~l~~~~~~~~~~~l~~L~  634 (763)
                      |+.+++.+ +.++.+|...+. .+++|+.+++.++  ++.++.  +..+++|+ .+++.+  .++.++...+ ..+++|+
T Consensus       228 L~~l~L~~-n~i~~I~~~aF~-~~~~L~~l~l~~n--i~~I~~~aF~~~~~L~~~l~l~~--~l~~I~~~aF-~~c~~L~  300 (329)
T 3sb4_A          228 LVSLDISK-TNATTIPDFTFA-QKKYLLKIKLPHN--LKTIGQRVFSNCGRLAGTLELPA--SVTAIEFGAF-MGCDNLR  300 (329)
T ss_dssp             CCEEECTT-BCCCEECTTTTT-TCTTCCEEECCTT--CCEECTTTTTTCTTCCEEEEECT--TCCEECTTTT-TTCTTEE
T ss_pred             CeEEECCC-CCcceecHhhhh-CCCCCCEEECCcc--cceehHHHhhCChhccEEEEEcc--cceEEchhhh-hCCccCC
Confidence            66666665 457777776443 4778888888664  666665  56677787 888876  4666655444 6778888


Q ss_pred             eEeeccCCCccccccccC
Q 039689          635 SLAIDSCDSLTYIARIQL  652 (763)
Q Consensus       635 ~L~l~~c~~l~~l~~~~~  652 (763)
                      .++++++ .++.++...|
T Consensus       301 ~l~l~~n-~i~~I~~~aF  317 (329)
T 3sb4_A          301 YVLATGD-KITTLGDELF  317 (329)
T ss_dssp             EEEECSS-CCCEECTTTT
T ss_pred             EEEeCCC-ccCccchhhh
Confidence            8887765 6777766655

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=98.67  E-value=5.7e-08  Score=100.28  Aligned_cols=218  Identities=15%  Similarity=0.149  Sum_probs=119.9

Q ss_pred             CCcccEEEecCCCCC--------------------ccC-cccCC--------CCcccEEecCCCCchhcc-hhhhhcccc
Q 039689          196 LPRLRVFSLRGYNIF--------------------ELP-KAIEN--------LKHLRFLDLSTTKIEILR-ESINTLYNL  245 (763)
Q Consensus       196 l~~Lr~L~L~~~~i~--------------------~lp-~~~~~--------l~~L~~L~L~~~~i~~lp-~~~~~L~~L  245 (763)
                      +++|++|||++|++.                    .+| ..|.+        +++|+.|+|++ .++.++ .+|.++++|
T Consensus        48 l~~L~~LdLs~n~i~~~~~~~~~~~~~~~~~~~~~~I~~~aF~~~~~~~~~g~~~L~~l~L~~-~i~~I~~~aF~~~~~L  126 (329)
T 3sb4_A           48 FPSLKVLDISNAEIKMYSGKAGTYPNGKFYIYMANFVPAYAFSNVVNGVTKGKQTLEKVILSE-KIKNIEDAAFKGCDNL  126 (329)
T ss_dssp             CTTCCEEEEEEEEECCEEESSSSSGGGCCEEECTTEECTTTTEEEETTEEEECTTCCC-CBCT-TCCEECTTTTTTCTTC
T ss_pred             hccCeEEecCcceeEEecCccccccccccccccccccCHHHhcccccccccccCCCcEEECCc-cccchhHHHhhcCccc
Confidence            889999999999988                    343 35666        88888888888 788775 467888888


Q ss_pred             cEEeecccccccccccc-ccCcccccccccCCccc---cccccc--CCCccCCCceeeecCccccc--------------
Q 039689          246 HTLLLEDCRRLKKLCKD-MGNLTKLHHLNNSNVGS---LEEMLM--LKSLVHLQGTLEISRLENVK--------------  305 (763)
Q Consensus       246 ~~L~L~~~~~l~~lp~~-i~~L~~L~~L~l~~~~~---l~~l~~--l~~L~~L~~~L~~~~~~~~~--------------  305 (763)
                      +.|++.+ +.+..+++. |....++..+.......   ...+..  +.++..|+..+.+.....+.              
T Consensus       127 ~~l~l~~-n~i~~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~~~~~L~~~i~~~~~~~l~~~~~~~~~~~~~~~  205 (329)
T 3sb4_A          127 KICQIRK-KTAPNLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFIEGEPLETTIQVGAMGKLEDEIMKAGLQPRDIN  205 (329)
T ss_dssp             CEEEBCC-SSCCEECTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCEEESCCCEEEEEECTTCCHHHHHHHTTCCGGGCS
T ss_pred             ceEEcCC-CCccccchhhhcCCCceEEecCcchhhhhccccccccccccccccceeEEecCCCcHHHHHhhcccCccccc
Confidence            8888888 455555544 77777777666554211   011110  11111221111111100000              


Q ss_pred             ------Ccccchhhhh-cCcccccceEEeeccCCCCCCccHHHHhhcCCCCCCceEEEeeeCCCCCCCccCCCCCCCceE
Q 039689          306 ------GVGDASEVQL-NSKVNLKALYLQWGVRDAVEPKTETQVIDMLKPHQKLELTITGYGGTKFPIWLGDSLFSKLML  378 (763)
Q Consensus       306 ------~~~~~~~~~l-~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~l~~l~~L~L~~~~~~~~~~p~~~~~~~~~~L~~  378 (763)
                            .........+ ..+++|+.+++..|                              ....+|..... .+.+|+.
T Consensus       206 ~l~~~~~l~~~~~~~l~~~~~~L~~l~L~~n------------------------------~i~~I~~~aF~-~~~~L~~  254 (329)
T 3sb4_A          206 FLTIEGKLDNADFKLIRDYMPNLVSLDISKT------------------------------NATTIPDFTFA-QKKYLLK  254 (329)
T ss_dssp             EEEEEECCCHHHHHHHHHHCTTCCEEECTTB------------------------------CCCEECTTTTT-TCTTCCE
T ss_pred             eEEEeeeecHHHHHHHHHhcCCCeEEECCCC------------------------------CcceecHhhhh-CCCCCCE
Confidence                  0000000011 12567777777543                              23334433221 1677888


Q ss_pred             EEEeccCCCCCCC--CCCCCCCCC-cceecccCCceEeC-ccccCCCcCCCCCCcceeecccc-chhhhcCCCCcCCccc
Q 039689          379 LKFDNCGTCTSLP--SVGQLPFLK-DPVISGMGRVKIVG-SEFYGSSCSVSFPSLETLFFVDI-CSKLQGTLPERLLLLE  453 (763)
Q Consensus       379 L~l~~~~~~~~l~--~l~~l~~L~-~L~l~~~~~l~~~~-~~~~~~~~~~~f~~L~~L~l~~~-~~~l~~~~~~~~~~L~  453 (763)
                      +++.++  +..++  .|..+++|+ .+.+.+  .+..++ ..|.+      +++|+.+++... ...+.......+++|+
T Consensus       255 l~l~~n--i~~I~~~aF~~~~~L~~~l~l~~--~l~~I~~~aF~~------c~~L~~l~l~~n~i~~I~~~aF~~~~~L~  324 (329)
T 3sb4_A          255 IKLPHN--LKTIGQRVFSNCGRLAGTLELPA--SVTAIEFGAFMG------CDNLRYVLATGDKITTLGDELFGNGVPSK  324 (329)
T ss_dssp             EECCTT--CCEECTTTTTTCTTCCEEEEECT--TCCEECTTTTTT------CTTEEEEEECSSCCCEECTTTTCTTCCCC
T ss_pred             EECCcc--cceehHHHhhCChhccEEEEEcc--cceEEchhhhhC------CccCCEEEeCCCccCccchhhhcCCcchh
Confidence            888776  55555  577888888 888876  344443 33433      778888887541 1222223334556666


Q ss_pred             EEE
Q 039689          454 KLN  456 (763)
Q Consensus       454 ~L~  456 (763)
                      .+.
T Consensus       325 ~ly  327 (329)
T 3sb4_A          325 LIY  327 (329)
T ss_dssp             EEE
T ss_pred             hhc
Confidence            654

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=98.60  E-value=4.5e-08  Score=101.97  Aligned_cols=88  Identities=17%  Similarity=0.161  Sum_probs=68.8

Q ss_pred             hhhccCCCCcccEEEecC-CCCCccC-cccCCCCcccEEecCCCCchhcc-hhhhhcccccEEeeccccccccccccccC
Q 039689          189 VLQRLLNLPRLRVFSLRG-YNIFELP-KAIENLKHLRFLDLSTTKIEILR-ESINTLYNLHTLLLEDCRRLKKLCKDMGN  265 (763)
Q Consensus       189 ~~~~~~~l~~Lr~L~L~~-~~i~~lp-~~~~~l~~L~~L~L~~~~i~~lp-~~~~~L~~L~~L~L~~~~~l~~lp~~i~~  265 (763)
                      +|. +..+++|++|+|++ |.++.+| ..|+++++|++|+|++|.++.+| ..|++|++|++|+|++ +.+..+|..+..
T Consensus        24 ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~-N~l~~~~~~~~~  101 (347)
T 2ifg_A           24 LHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSF-NALESLSWKTVQ  101 (347)
T ss_dssp             TTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCS-SCCSCCCSTTTC
T ss_pred             cCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCC-CccceeCHHHcc
Confidence            566 77888888888886 8888876 67888888888888888888774 4678888888888888 577778776433


Q ss_pred             cccccccccCCcc
Q 039689          266 LTKLHHLNNSNVG  278 (763)
Q Consensus       266 L~~L~~L~l~~~~  278 (763)
                      ..+|+.|++.+|.
T Consensus       102 ~~~L~~l~l~~N~  114 (347)
T 2ifg_A          102 GLSLQELVLSGNP  114 (347)
T ss_dssp             SCCCCEEECCSSC
T ss_pred             cCCceEEEeeCCC
Confidence            3348888888876

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=98.51  E-value=1.3e-07  Score=98.48  Aligned_cols=83  Identities=17%  Similarity=0.162  Sum_probs=72.0

Q ss_pred             cEEEecCC-CCCccCcccCCCCcccEEecCC-CCchhcc-hhhhhcccccEEeeccccccccccc-cccCcccccccccC
Q 039689          200 RVFSLRGY-NIFELPKAIENLKHLRFLDLST-TKIEILR-ESINTLYNLHTLLLEDCRRLKKLCK-DMGNLTKLHHLNNS  275 (763)
Q Consensus       200 r~L~L~~~-~i~~lp~~~~~l~~L~~L~L~~-~~i~~lp-~~~~~L~~L~~L~L~~~~~l~~lp~-~i~~L~~L~~L~l~  275 (763)
                      ..++.+++ .++.+|. |..+++|++|+|++ |.++.+| ..|+.|++|++|+|++| .+..+|+ .|++|++|++|+|+
T Consensus        11 ~~v~~~~~n~l~~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N-~l~~~~~~~~~~l~~L~~L~l~   88 (347)
T 2ifg_A           11 SGLRCTRDGALDSLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKS-GLRFVAPDAFHFTPRLSRLNLS   88 (347)
T ss_dssp             SCEECCSSCCCTTTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSS-CCCEECTTGGGSCSCCCEEECC
T ss_pred             CEEEcCCCCCCCccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCC-ccceeCHHHhcCCcCCCEEeCC
Confidence            34688888 8999999 99999999999996 9999987 57999999999999995 6777765 58999999999999


Q ss_pred             Cccccccccc
Q 039689          276 NVGSLEEMLM  285 (763)
Q Consensus       276 ~~~~l~~l~~  285 (763)
                      +|. +..+|.
T Consensus        89 ~N~-l~~~~~   97 (347)
T 2ifg_A           89 FNA-LESLSW   97 (347)
T ss_dssp             SSC-CSCCCS
T ss_pred             CCc-cceeCH
Confidence            998 666553

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=98.37  E-value=1.3e-05  Score=84.43  Aligned_cols=79  Identities=15%  Similarity=0.129  Sum_probs=39.7

Q ss_pred             ccCCCCcccEEEecCCCCCccC-cccCCCCcccEEecCCCCchhcc-hhhhhcccccEEeeccccccccccccccCcccc
Q 039689          192 RLLNLPRLRVFSLRGYNIFELP-KAIENLKHLRFLDLSTTKIEILR-ESINTLYNLHTLLLEDCRRLKKLCKDMGNLTKL  269 (763)
Q Consensus       192 ~~~~l~~Lr~L~L~~~~i~~lp-~~~~~l~~L~~L~L~~~~i~~lp-~~~~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L  269 (763)
                      .|.++ +|+.+.+..+ ++.++ ..|.+. +|+.+.+.. .++.++ .+|.++.+|+.+++.+ +.+..+|...-...+|
T Consensus       131 aF~~~-~L~~i~l~~~-i~~I~~~aF~~~-~L~~i~lp~-~l~~I~~~aF~~c~~L~~l~l~~-n~l~~I~~~aF~~~~L  205 (401)
T 4fdw_A          131 AFRNS-QIAKVVLNEG-LKSIGDMAFFNS-TVQEIVFPS-TLEQLKEDIFYYCYNLKKADLSK-TKITKLPASTFVYAGI  205 (401)
T ss_dssp             TTTTC-CCSEEECCTT-CCEECTTTTTTC-CCCEEECCT-TCCEECSSTTTTCTTCCEEECTT-SCCSEECTTTTTTCCC
T ss_pred             hcccC-CccEEEeCCC-ccEECHHhcCCC-CceEEEeCC-CccEehHHHhhCcccCCeeecCC-CcceEechhhEeeccc
Confidence            34443 4666665443 44453 344442 466666654 444442 4455666666666655 3455555442223555


Q ss_pred             cccccC
Q 039689          270 HHLNNS  275 (763)
Q Consensus       270 ~~L~l~  275 (763)
                      +.+.+.
T Consensus       206 ~~l~lp  211 (401)
T 4fdw_A          206 EEVLLP  211 (401)
T ss_dssp             SEEECC
T ss_pred             CEEEeC
Confidence            555554

>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}

Probab=98.37  E-value=1.4e-05  Score=84.43  Aligned_cols=64  Identities=8%  Similarity=0.165  Sum_probs=35.1

Q ss_pred             CCccC-cccCCCCcccEEecCCCCchhcc-hhhhhcccccEEeecccccccccccc-ccCcccccccccC
Q 039689          209 IFELP-KAIENLKHLRFLDLSTTKIEILR-ESINTLYNLHTLLLEDCRRLKKLCKD-MGNLTKLHHLNNS  275 (763)
Q Consensus       209 i~~lp-~~~~~l~~L~~L~L~~~~i~~lp-~~~~~L~~L~~L~L~~~~~l~~lp~~-i~~L~~L~~L~l~  275 (763)
                      ++.+. .+|.++.+|+.+.+.. .++.++ .+|.++.+|+.+++.+  .+..++.. +.++.+|+.+.+.
T Consensus        59 VtsIg~~AF~~c~~L~~i~lp~-~i~~I~~~aF~~c~~L~~i~lp~--~l~~I~~~aF~~c~~L~~i~~p  125 (394)
T 4fs7_A           59 VVSIGYAAFQGCRKVTEIKIPS-TVREIGEFAFENCSKLEIINIPD--SVKMIGRCTFSGCYALKSILLP  125 (394)
T ss_dssp             EEEECTTTTTTCTTEEEEECCT-TCCEECTTTTTTCTTCCEECCCT--TCCEECTTTTTTCTTCCCCCCC
T ss_pred             EeEhHHHHhhCCCCceEEEeCC-CccCcchhHhhCCCCCcEEEeCC--CceEccchhhcccccchhhccc
Confidence            34442 4566666666666653 355553 4566666666666654  24444433 5566666655544

>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}

Probab=98.32  E-value=1.3e-05  Score=84.66  Aligned_cols=32  Identities=13%  Similarity=0.048  Sum_probs=18.7

Q ss_pred             CCCceEEEEeccCCCCCCC--CCCCCCCCCcceecc
Q 039689          373 FSKLMLLKFDNCGTCTSLP--SVGQLPFLKDPVISG  406 (763)
Q Consensus       373 ~~~L~~L~l~~~~~~~~l~--~l~~l~~L~~L~l~~  406 (763)
                      +.+|+.+.+.++.  ..++  .+...++|+.+.+..
T Consensus       161 c~~L~~i~l~~~~--~~I~~~~F~~c~~L~~i~l~~  194 (394)
T 4fs7_A          161 CESLEYVSLPDSM--ETLHNGLFSGCGKLKSIKLPR  194 (394)
T ss_dssp             CTTCCEEECCTTC--CEECTTTTTTCTTCCBCCCCT
T ss_pred             cCCCcEEecCCcc--ceeccccccCCCCceEEEcCC
Confidence            4567777765432  2233  466667777777654

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=98.22  E-value=1.4e-05  Score=84.31  Aligned_cols=196  Identities=14%  Similarity=0.120  Sum_probs=124.1

Q ss_pred             hhccCCCCcccEEEecCCCCCccC-cccCCCCcccEEecCCCCchhcchhhhhcccccEEeecccccccccccc-ccCcc
Q 039689          190 LQRLLNLPRLRVFSLRGYNIFELP-KAIENLKHLRFLDLSTTKIEILRESINTLYNLHTLLLEDCRRLKKLCKD-MGNLT  267 (763)
Q Consensus       190 ~~~~~~l~~Lr~L~L~~~~i~~lp-~~~~~l~~L~~L~L~~~~i~~lp~~~~~L~~L~~L~L~~~~~l~~lp~~-i~~L~  267 (763)
                      ...|.++ .|+.+.+.. .+..++ ..|.++.+|+.+++++|.++.+|...-...+|+.+.+..  .+..++.. |.+++
T Consensus       151 ~~aF~~~-~L~~i~lp~-~l~~I~~~aF~~c~~L~~l~l~~n~l~~I~~~aF~~~~L~~l~lp~--~l~~I~~~aF~~~~  226 (401)
T 4fdw_A          151 DMAFFNS-TVQEIVFPS-TLEQLKEDIFYYCYNLKKADLSKTKITKLPASTFVYAGIEEVLLPV--TLKEIGSQAFLKTS  226 (401)
T ss_dssp             TTTTTTC-CCCEEECCT-TCCEECSSTTTTCTTCCEEECTTSCCSEECTTTTTTCCCSEEECCT--TCCEECTTTTTTCT
T ss_pred             HHhcCCC-CceEEEeCC-CccEehHHHhhCcccCCeeecCCCcceEechhhEeecccCEEEeCC--chheehhhHhhCCC
Confidence            3455554 699999985 777774 789999999999999999999976554468999999986  37777655 89999


Q ss_pred             cccccccCCccccccccc--CCCccCCCceeeecCcccccCcccchhhhhcCcccccceEEeeccCCCCCCccHHHHhhc
Q 039689          268 KLHHLNNSNVGSLEEMLM--LKSLVHLQGTLEISRLENVKGVGDASEVQLNSKVNLKALYLQWGVRDAVEPKTETQVIDM  345 (763)
Q Consensus       268 ~L~~L~l~~~~~l~~l~~--l~~L~~L~~~L~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~  345 (763)
                      +|+.+++..+  +..++.  +.+ ..|+ .+.+.     ..........|.++++|+.+.+..+.....           
T Consensus       227 ~L~~l~l~~~--l~~I~~~aF~~-~~L~-~i~lp-----~~i~~I~~~aF~~c~~L~~l~l~~~~~~~~-----------  286 (401)
T 4fdw_A          227 QLKTIEIPEN--VSTIGQEAFRE-SGIT-TVKLP-----NGVTNIASRAFYYCPELAEVTTYGSTFNDD-----------  286 (401)
T ss_dssp             TCCCEECCTT--CCEECTTTTTT-CCCS-EEEEE-----TTCCEECTTTTTTCTTCCEEEEESSCCCCC-----------
T ss_pred             CCCEEecCCC--ccCcccccccc-CCcc-EEEeC-----CCccEEChhHhhCCCCCCEEEeCCccccCC-----------
Confidence            9999999864  454443  333 4455 44442     223444456777888888888865432200           


Q ss_pred             CCCCCCceEEEeeeCCCCCCC-ccCCCCCCCceEEEEeccCCCCCCC--CCCCCCCCCcceecccCCceEeCc-cccCCC
Q 039689          346 LKPHQKLELTITGYGGTKFPI-WLGDSLFSKLMLLKFDNCGTCTSLP--SVGQLPFLKDPVISGMGRVKIVGS-EFYGSS  421 (763)
Q Consensus       346 l~~l~~L~L~~~~~~~~~~p~-~~~~~~~~~L~~L~l~~~~~~~~l~--~l~~l~~L~~L~l~~~~~l~~~~~-~~~~~~  421 (763)
                                    ....++. .+..  +++|+.+++.++  +..++  .|..+++|+.+.|.++  +..++. .|.   
T Consensus       287 --------------~~~~I~~~aF~~--c~~L~~l~l~~~--i~~I~~~aF~~c~~L~~l~lp~~--l~~I~~~aF~---  343 (401)
T 4fdw_A          287 --------------PEAMIHPYCLEG--CPKLARFEIPES--IRILGQGLLGGNRKVTQLTIPAN--VTQINFSAFN---  343 (401)
T ss_dssp             --------------TTCEECTTTTTT--CTTCCEECCCTT--CCEECTTTTTTCCSCCEEEECTT--CCEECTTSSS---
T ss_pred             --------------cccEECHHHhhC--CccCCeEEeCCc--eEEEhhhhhcCCCCccEEEECcc--ccEEcHHhCC---
Confidence                          0001111 1222  556666666632  34444  5666677777777442  333332 222   


Q ss_pred             cCCCCCCcceeeccc
Q 039689          422 CSVSFPSLETLFFVD  436 (763)
Q Consensus       422 ~~~~f~~L~~L~l~~  436 (763)
                         .+ +|+.+.+.+
T Consensus       344 ---~~-~L~~l~l~~  354 (401)
T 4fdw_A          344 ---NT-GIKEVKVEG  354 (401)
T ss_dssp             ---SS-CCCEEEECC
T ss_pred             ---CC-CCCEEEEcC
Confidence               24 677777765

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=98.18  E-value=2.6e-07  Score=96.54  Aligned_cols=81  Identities=19%  Similarity=0.233  Sum_probs=37.3

Q ss_pred             CcccEEEecCCCCCccC-ccc----C-CCCcccEEecCCCCchhc--chhhhhcccccEEeecccccccccc-ccc----
Q 039689          197 PRLRVFSLRGYNIFELP-KAI----E-NLKHLRFLDLSTTKIEIL--RESINTLYNLHTLLLEDCRRLKKLC-KDM----  263 (763)
Q Consensus       197 ~~Lr~L~L~~~~i~~lp-~~~----~-~l~~L~~L~L~~~~i~~l--p~~~~~L~~L~~L~L~~~~~l~~lp-~~i----  263 (763)
                      +.|+.|++++|.++... ..+    . ...+|++|+|++|.++..  ..-...+.+|++|+|++| .+.... ..+    
T Consensus        72 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n-~l~~~~~~~L~~~L  150 (372)
T 3un9_A           72 SSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLN-SLGPEACKDLRDLL  150 (372)
T ss_dssp             TTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSS-CCCHHHHHHHHHHH
T ss_pred             hhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCC-CCCHHHHHHHHHHH
Confidence            34556666666654321 111    1 224566666666655421  122234455666666664 332211 111    


Q ss_pred             -cCcccccccccCCcc
Q 039689          264 -GNLTKLHHLNNSNVG  278 (763)
Q Consensus       264 -~~L~~L~~L~l~~~~  278 (763)
                       ...++|++|++++|.
T Consensus       151 ~~~~~~L~~L~Ls~n~  166 (372)
T 3un9_A          151 LHDQCQITTLRLSNNP  166 (372)
T ss_dssp             HSTTCCCCEEECCSSC
T ss_pred             HhcCCccceeeCCCCC
Confidence             223456666666654

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=98.07  E-value=7.5e-06  Score=73.96  Aligned_cols=119  Identities=13%  Similarity=0.164  Sum_probs=77.1

Q ss_pred             HHHHHHHhcCce-EEecCCC-CCcchhhhhhccCCCCcccEEEecCCCCCcc-CcccCCCCcccEEecCCCC-chhc-ch
Q 039689          163 NDLTRWAAGETC-FRMEDTP-EGERRQNVLQRLLNLPRLRVFSLRGYNIFEL-PKAIENLKHLRFLDLSTTK-IEIL-RE  237 (763)
Q Consensus       163 ~~~~~~~~~~~~-~~~~~~~-~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~~l-p~~~~~l~~L~~L~L~~~~-i~~l-p~  237 (763)
                      +.-|.|+.+... .++.+.. .-.....+|.....-..|+.||+++|.|+.. -..+.++++|++|+|++|. |+.- -.
T Consensus        25 ~aaA~~~l~~gg~vrf~~~~~w~~~~~~LP~~~~~~~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~  104 (176)
T 3e4g_A           25 RAASEWLLRCGAMVRYHGQQRWQKDYNHLPTGPLDKYKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLE  104 (176)
T ss_dssp             HHHHHHHHHTTCEEEETTCSSCBCCGGGSCCCSTTCCCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHH
T ss_pred             HHHHHHHHHcCCEEEEcCCceEEeccccCCcccCCCceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHH
Confidence            444556665443 3444331 1111222343333345799999999998764 3567899999999999984 7642 34


Q ss_pred             hhhhc----ccccEEeecccccccccc-ccccCcccccccccCCccccc
Q 039689          238 SINTL----YNLHTLLLEDCRRLKKLC-KDMGNLTKLHHLNNSNVGSLE  281 (763)
Q Consensus       238 ~~~~L----~~L~~L~L~~~~~l~~lp-~~i~~L~~L~~L~l~~~~~l~  281 (763)
                      .++.+    ++|++|+|++|..++.-- ..+.++++|++|++++|..++
T Consensus       105 ~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~L~~L~L~~c~~It  153 (176)
T 3e4g_A          105 RLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRNLKYLFLSDLPGVK  153 (176)
T ss_dssp             HHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTTCCEEEEESCTTCC
T ss_pred             HHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCCCCEEECCCCCCCC
Confidence            55554    479999999998776531 236788999999999987443

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=97.93  E-value=1.8e-06  Score=90.09  Aligned_cols=132  Identities=17%  Similarity=0.129  Sum_probs=73.0

Q ss_pred             CCcccEEEecCCCCCcc--CcccCCCCcccEEecCCCCchhc-chhh-----hhcccccEEeecccccccc-----cccc
Q 039689          196 LPRLRVFSLRGYNIFEL--PKAIENLKHLRFLDLSTTKIEIL-RESI-----NTLYNLHTLLLEDCRRLKK-----LCKD  262 (763)
Q Consensus       196 l~~Lr~L~L~~~~i~~l--p~~~~~l~~L~~L~L~~~~i~~l-p~~~-----~~L~~L~~L~L~~~~~l~~-----lp~~  262 (763)
                      .+.|+.|+|++|.++..  ..-...+.+|++|+|++|.++.. ...+     ....+|++|+|++| .+..     ++..
T Consensus       100 ~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L~~~~~~L~~L~Ls~n-~l~~~~~~~l~~~  178 (372)
T 3un9_A          100 RHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLLLHDQCQITTLRLSNN-PLTAAGVAVLMEG  178 (372)
T ss_dssp             SSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHHHSTTCCCCEEECCSS-CCHHHHHHHHHHH
T ss_pred             CCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHHHhcCCccceeeCCCC-CCChHHHHHHHHH
Confidence            46788888888877542  22233456778888888877643 2222     23467888888875 3432     4444


Q ss_pred             ccCcccccccccCCcccccccc------cCCCccCCCceeeecCcccccCcccchhhhhcCcccccceEEeecc
Q 039689          263 MGNLTKLHHLNNSNVGSLEEML------MLKSLVHLQGTLEISRLENVKGVGDASEVQLNSKVNLKALYLQWGV  330 (763)
Q Consensus       263 i~~L~~L~~L~l~~~~~l~~l~------~l~~L~~L~~~L~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~  330 (763)
                      +..+++|++|++++|. +....      .+...+.|+ .|++.+..--..........+...++|+.|++++|.
T Consensus       179 L~~~~~L~~L~Ls~N~-l~~~g~~~L~~~L~~~~~L~-~L~Ls~N~i~~~g~~~l~~~L~~~~~L~~L~Ls~N~  250 (372)
T 3un9_A          179 LAGNTSVTHLSLLHTG-LGDEGLELLAAQLDRNRQLQ-ELNVAYNGAGDTAALALARAAREHPSLELLHLYFNE  250 (372)
T ss_dssp             HHTCSSCCEEECTTSS-CHHHHHHHHHHHGGGCSCCC-EEECCSSCCCHHHHHHHHHHHHHCSSCCEEECTTSS
T ss_pred             HhcCCCcCEEeCCCCC-CCcHHHHHHHHHHhcCCCcC-eEECCCCCCCHHHHHHHHHHHHhCCCCCEEeccCCC
Confidence            5667778888888876 44321      133344455 555544211100011222234445677777776663

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=97.85  E-value=6e-06  Score=74.59  Aligned_cols=95  Identities=18%  Similarity=0.340  Sum_probs=65.3

Q ss_pred             ccCcccCCCCcccEEecCCCCchhc-chhhhhcccccEEeecccccccccc-ccccCc----ccccccccCCcccccc--
Q 039689          211 ELPKAIENLKHLRFLDLSTTKIEIL-RESINTLYNLHTLLLEDCRRLKKLC-KDMGNL----TKLHHLNNSNVGSLEE--  282 (763)
Q Consensus       211 ~lp~~~~~l~~L~~L~L~~~~i~~l-p~~~~~L~~L~~L~L~~~~~l~~lp-~~i~~L----~~L~~L~l~~~~~l~~--  282 (763)
                      .+|.....-.+|+.||+++|.|+.. -..+..+++|++|+|++|..+..-- ..++.+    ++|++|++++|..++.  
T Consensus        52 ~LP~~~~~~~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~G  131 (176)
T 3e4g_A           52 HLPTGPLDKYKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKG  131 (176)
T ss_dssp             GSCCCSTTCCCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHH
T ss_pred             cCCcccCCCceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHH
Confidence            4565444446899999999998753 3567899999999999998776532 225554    4799999999975543  


Q ss_pred             cccCCCccCCCceeeecCcccccC
Q 039689          283 MLMLKSLVHLQGTLEISRLENVKG  306 (763)
Q Consensus       283 l~~l~~L~~L~~~L~~~~~~~~~~  306 (763)
                      +..+..+++|+ .|.+.++..+.+
T Consensus       132 l~~L~~~~~L~-~L~L~~c~~Itd  154 (176)
T 3e4g_A          132 IIALHHFRNLK-YLFLSDLPGVKE  154 (176)
T ss_dssp             HHHGGGCTTCC-EEEEESCTTCCC
T ss_pred             HHHHhcCCCCC-EEECCCCCCCCc
Confidence            33345555565 566655554443

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=97.82  E-value=1.1e-05  Score=78.85  Aligned_cols=59  Identities=20%  Similarity=0.436  Sum_probs=29.6

Q ss_pred             CCCcccEEEecCCCCCccC---cccCCCCcccEEecCCCCchhcchhhhhcc--cccEEeecccc
Q 039689          195 NLPRLRVFSLRGYNIFELP---KAIENLKHLRFLDLSTTKIEILRESINTLY--NLHTLLLEDCR  254 (763)
Q Consensus       195 ~l~~Lr~L~L~~~~i~~lp---~~~~~l~~L~~L~L~~~~i~~lp~~~~~L~--~L~~L~L~~~~  254 (763)
                      ++++|++|+|++|.++.++   ..+..+++|++|+|++|.|+.+ ..+..+.  +|++|+|++|.
T Consensus       168 ~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~-~~l~~l~~l~L~~L~L~~Np  231 (267)
T 3rw6_A          168 NIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE-RELDKIKGLKLEELWLDGNS  231 (267)
T ss_dssp             HCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG-GGGGGGTTSCCSEEECTTST
T ss_pred             hCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc-hhhhhcccCCcceEEccCCc
Confidence            3455555555555554432   3344555555555555555544 2233333  55555555543

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=97.72  E-value=2.6e-05  Score=72.36  Aligned_cols=90  Identities=19%  Similarity=0.158  Sum_probs=70.0

Q ss_pred             hhhhccCCCCcccEEEecCC-CCCc-----cCcccCCCCcccEEecCCCCchh-----cchhhhhcccccEEeecccccc
Q 039689          188 NVLQRLLNLPRLRVFSLRGY-NIFE-----LPKAIENLKHLRFLDLSTTKIEI-----LRESINTLYNLHTLLLEDCRRL  256 (763)
Q Consensus       188 ~~~~~~~~l~~Lr~L~L~~~-~i~~-----lp~~~~~l~~L~~L~L~~~~i~~-----lp~~~~~L~~L~~L~L~~~~~l  256 (763)
                      .+...+...+.|++|+|++| .+..     +...+...++|++|+|++|.|..     +...+...++|++|+|++| .+
T Consensus        27 ~l~~~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N-~i  105 (185)
T 1io0_A           27 TLKRIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESN-FI  105 (185)
T ss_dssp             HHHHHHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSS-CC
T ss_pred             HHHHHHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCC-cC
Confidence            34445578899999999999 8764     34667778999999999998873     4566777789999999995 45


Q ss_pred             cc-----ccccccCccccccccc--CCcc
Q 039689          257 KK-----LCKDMGNLTKLHHLNN--SNVG  278 (763)
Q Consensus       257 ~~-----lp~~i~~L~~L~~L~l--~~~~  278 (763)
                      ..     +...+...++|++|++  ++|.
T Consensus       106 ~~~g~~~l~~~L~~n~~L~~L~L~~~~N~  134 (185)
T 1io0_A          106 SGSGILALVEALQSNTSLIELRIDNQSQP  134 (185)
T ss_dssp             CHHHHHHHHHGGGGCSSCCEEECCCCSSC
T ss_pred             CHHHHHHHHHHHHhCCCceEEEecCCCCC
Confidence            43     4566777889999999  6675

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=97.60  E-value=5e-05  Score=78.46  Aligned_cols=58  Identities=17%  Similarity=0.126  Sum_probs=30.1

Q ss_pred             CCCcceEEEecCcccccc----CCCCCCCCccEEEEccCCCCCC-----CchhhhcCCCCCcceEeeccC
Q 039689          581 NSSLESLKIRSCNSLVSF----PDFALPSQLRTVTIKGCDALES-----LPEAWMQNSSTSLESLAIDSC  641 (763)
Q Consensus       581 l~~L~~L~l~~c~~l~~~----~~~~~~~~L~~L~l~~~~~l~~-----~~~~~~~~~l~~L~~L~l~~c  641 (763)
                      +++|++|++++|......    .....+++|++|+++.|. ++.     ++..+  ..+++|+.|++++|
T Consensus       251 ~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~-L~d~G~~~L~~~L--~~l~~L~~L~L~~n  317 (362)
T 2ra8_A          251 FPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGV-LTDEGARLLLDHV--DKIKHLKFINMKYN  317 (362)
T ss_dssp             CTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSC-CBHHHHHHHHTTH--HHHTTCSEEECCSB
T ss_pred             CCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCC-CChHHHHHHHhhc--ccCCcceEEECCCC
Confidence            567777777665532211    111234667777776653 332     12111  34566777777666

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=97.53  E-value=0.00012  Score=75.56  Aligned_cols=129  Identities=21%  Similarity=0.260  Sum_probs=65.3

Q ss_pred             CCCcceEEEecCccccccCCCCCCCCccEEEEccCCCCCCCchhhhcCCCCCcceEeeccCCC-------ccccccccCC
Q 039689          581 NSSLESLKIRSCNSLVSFPDFALPSQLRTVTIKGCDALESLPEAWMQNSSTSLESLAIDSCDS-------LTYIARIQLP  653 (763)
Q Consensus       581 l~~L~~L~l~~c~~l~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~c~~-------l~~l~~~~~~  653 (763)
                      +|+|+.|.+++|..+ .++.+. .++|++|++..|..-......+....+|+|+.|+++.+.+       ++.+... +.
T Consensus       171 ~P~L~~L~L~g~~~l-~l~~~~-~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~-l~  247 (362)
T 2ra8_A          171 MPLLNNLKIKGTNNL-SIGKKP-RPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPL-FS  247 (362)
T ss_dssp             CTTCCEEEEECCBTC-BCCSCB-CTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTGGG-SC
T ss_pred             CCCCcEEEEeCCCCc-eecccc-CCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccccchhHHHHHHH-Hh
Confidence            678888888776433 233333 5788888888764322211222213678888888753211       1111100 00


Q ss_pred             CCCcEEEEecCCCCCCCccceEEecCCCCCcc----cc--CCCCCCcCeEeeccCCCCcc-----ccCCCCCCCCcCcee
Q 039689          654 PSLKRLIIFRCDNLRFNSLRKLKISGGCPDLV----SS--PRFPASLTELKISDMPSLER-----LSSIGENLTSLKFLD  722 (763)
Q Consensus       654 ~~L~~L~l~~c~~l~~~~L~~L~l~~~~~~l~----~~--~~~~~~L~~L~l~~~~~l~~-----ip~~~~~l~~L~~L~  722 (763)
                                  .-.+++|+.|.+++ |.--.    .+  ...+++|++|+|+. +.++.     ++..+..+++|+.|+
T Consensus       248 ------------~~~~p~Lr~L~L~~-~~i~~~~~~~la~a~~~~~L~~LdLs~-n~L~d~G~~~L~~~L~~l~~L~~L~  313 (362)
T 2ra8_A          248 ------------KDRFPNLKWLGIVD-AEEQNVVVEMFLESDILPQLETMDISA-GVLTDEGARLLLDHVDKIKHLKFIN  313 (362)
T ss_dssp             ------------TTTCTTCCEEEEES-CTTHHHHHHHHHHCSSGGGCSEEECCS-SCCBHHHHHHHHTTHHHHTTCSEEE
T ss_pred             ------------cCCCCCcCEEeCCC-CCCchHHHHHHHhCccCCCCCEEECCC-CCCChHHHHHHHhhcccCCcceEEE
Confidence                        00133444444433 21100    00  01346788888866 45554     344445677888888


Q ss_pred             cccC
Q 039689          723 LDNC  726 (763)
Q Consensus       723 l~~c  726 (763)
                      +++|
T Consensus       314 L~~n  317 (362)
T 2ra8_A          314 MKYN  317 (362)
T ss_dssp             CCSB
T ss_pred             CCCC
Confidence            8776

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=97.48  E-value=1.4e-05  Score=78.20  Aligned_cols=83  Identities=22%  Similarity=0.209  Sum_probs=58.0

Q ss_pred             CCCCcccE--EEecCCCCCccCcc----cCCCCcccEEecCCCCchhc---chhhhhcccccEEeecccccccccccccc
Q 039689          194 LNLPRLRV--FSLRGYNIFELPKA----IENLKHLRFLDLSTTKIEIL---RESINTLYNLHTLLLEDCRRLKKLCKDMG  264 (763)
Q Consensus       194 ~~l~~Lr~--L~L~~~~i~~lp~~----~~~l~~L~~L~L~~~~i~~l---p~~~~~L~~L~~L~L~~~~~l~~lp~~i~  264 (763)
                      ...+.|+.  ++++.|....++..    ...+++|++|+|++|.|+.+   |..++.+++|++|+|++ +.+..+ .++.
T Consensus       138 ~~dp~L~~~~l~l~~N~~~~~~~~l~i~~~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~-N~i~~~-~~l~  215 (267)
T 3rw6_A          138 RSDPDLVAQNIDVVLNRRSCMAATLRIIEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSG-NELKSE-RELD  215 (267)
T ss_dssp             GGCHHHHHTTCCCCTTSHHHHHHHHHHHHHHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTT-SCCCSG-GGGG
T ss_pred             CCCcchhhcCccccCCHHHHHHHHHHHHHhhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCC-CccCCc-hhhh
Confidence            33444444  55566654333322    24678999999999988865   46778999999999998 567666 3355


Q ss_pred             Ccc--cccccccCCcc
Q 039689          265 NLT--KLHHLNNSNVG  278 (763)
Q Consensus       265 ~L~--~L~~L~l~~~~  278 (763)
                      .+.  +|++|++++|.
T Consensus       216 ~l~~l~L~~L~L~~Np  231 (267)
T 3rw6_A          216 KIKGLKLEELWLDGNS  231 (267)
T ss_dssp             GGTTSCCSEEECTTST
T ss_pred             hcccCCcceEEccCCc
Confidence            555  89999999987

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=97.32  E-value=8.4e-05  Score=68.93  Aligned_cols=89  Identities=17%  Similarity=0.179  Sum_probs=69.9

Q ss_pred             hhhccCCCCcccEEEecCCCCCc-----cCcccCCCCcccEEecCCCCchh-----cchhhhhcccccEEee--cccccc
Q 039689          189 VLQRLLNLPRLRVFSLRGYNIFE-----LPKAIENLKHLRFLDLSTTKIEI-----LRESINTLYNLHTLLL--EDCRRL  256 (763)
Q Consensus       189 ~~~~~~~l~~Lr~L~L~~~~i~~-----lp~~~~~l~~L~~L~L~~~~i~~-----lp~~~~~L~~L~~L~L--~~~~~l  256 (763)
                      +...+...+.|++|+|++|.+..     +...+...+.|++|+|++|.|..     +...+...++|++|+|  ++| .+
T Consensus        57 l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~~~N-~i  135 (185)
T 1io0_A           57 CAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILALVEALQSNTSLIELRIDNQSQ-PL  135 (185)
T ss_dssp             HHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHHHHHGGGGCSSCCEEECCCCSS-CC
T ss_pred             HHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHHHHHHHHHHhCCCceEEEecCCCC-CC
Confidence            45556778999999999999875     34556667899999999999874     5677788889999999  664 45


Q ss_pred             cc-----ccccccCcccccccccCCcc
Q 039689          257 KK-----LCKDMGNLTKLHHLNNSNVG  278 (763)
Q Consensus       257 ~~-----lp~~i~~L~~L~~L~l~~~~  278 (763)
                      ..     +...+...++|++|++++|.
T Consensus       136 ~~~g~~~l~~~L~~n~~L~~L~L~~n~  162 (185)
T 1io0_A          136 GNNVEMEIANMLEKNTTLLKFGYHFTQ  162 (185)
T ss_dssp             CHHHHHHHHHHHHHCSSCCEEECCCSS
T ss_pred             CHHHHHHHHHHHHhCCCcCEEeccCCC
Confidence            43     34456667899999999986

>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}

Probab=97.20  E-value=0.016  Score=60.82  Aligned_cols=66  Identities=26%  Similarity=0.342  Sum_probs=40.1

Q ss_pred             CCCCcceEEEecCccccccCC--CCCCCCccEEEEccCCCCCCCchhhhcCCCCCcceEeeccCCCccccccccC
Q 039689          580 SNSSLESLKIRSCNSLVSFPD--FALPSQLRTVTIKGCDALESLPEAWMQNSSTSLESLAIDSCDSLTYIARIQL  652 (763)
Q Consensus       580 ~l~~L~~L~l~~c~~l~~~~~--~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~  652 (763)
                      .+..|+.+.+.+.  ...+..  +...++|+.+.+..  .+..++...+ ..+.+|+.+.+..  +++.+....|
T Consensus       263 ~c~~L~~i~lp~~--~~~I~~~aF~~c~~L~~i~l~~--~i~~I~~~aF-~~c~~L~~i~lp~--~v~~I~~~aF  330 (394)
T 4gt6_A          263 SCAYLASVKMPDS--VVSIGTGAFMNCPALQDIEFSS--RITELPESVF-AGCISLKSIDIPE--GITQILDDAF  330 (394)
T ss_dssp             TCSSCCEEECCTT--CCEECTTTTTTCTTCCEEECCT--TCCEECTTTT-TTCTTCCEEECCT--TCCEECTTTT
T ss_pred             ecccccEEecccc--cceecCcccccccccccccCCC--cccccCceee-cCCCCcCEEEeCC--cccEehHhHh
Confidence            3677777777432  233433  45557777777753  4566665544 6677788777764  4666665555

>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}

Probab=96.98  E-value=0.012  Score=61.78  Aligned_cols=100  Identities=18%  Similarity=0.198  Sum_probs=62.5

Q ss_pred             CCCceEEEEeccCCCCCCC--CCCCCCCCCcceecccCCceEeCc-cccCCCcCCCCCCcceeeccccchhhhcCCCCcC
Q 039689          373 FSKLMLLKFDNCGTCTSLP--SVGQLPFLKDPVISGMGRVKIVGS-EFYGSSCSVSFPSLETLFFVDICSKLQGTLPERL  449 (763)
Q Consensus       373 ~~~L~~L~l~~~~~~~~l~--~l~~l~~L~~L~l~~~~~l~~~~~-~~~~~~~~~~f~~L~~L~l~~~~~~l~~~~~~~~  449 (763)
                      +.+|+.+.+.+..  ..+.  .+...+.|+.+.+..  .+..++. .|      ..+.+|+.+.+.+....+.......+
T Consensus       264 c~~L~~i~lp~~~--~~I~~~aF~~c~~L~~i~l~~--~i~~I~~~aF------~~c~~L~~i~lp~~v~~I~~~aF~~C  333 (394)
T 4gt6_A          264 CAYLASVKMPDSV--VSIGTGAFMNCPALQDIEFSS--RITELPESVF------AGCISLKSIDIPEGITQILDDAFAGC  333 (394)
T ss_dssp             CSSCCEEECCTTC--CEECTTTTTTCTTCCEEECCT--TCCEECTTTT------TTCTTCCEEECCTTCCEECTTTTTTC
T ss_pred             cccccEEeccccc--ceecCcccccccccccccCCC--cccccCceee------cCCCCcCEEEeCCcccEehHhHhhCC
Confidence            4667777775442  2232  566778888888753  3333332 33      33678888888653233333444567


Q ss_pred             CcccEEEEecC-cch-hhcCCCCCcccEEEEecCC
Q 039689          450 LLLEKLNIFRC-EQL-LVTLQCLPALRELEIDGCK  482 (763)
Q Consensus       450 ~~L~~L~l~~~-~~l-~~~l~~l~~L~~L~l~~~~  482 (763)
                      .+|+.+.+-.. ..+ ..+|..+++|+.+++.++.
T Consensus       334 ~~L~~i~ip~sv~~I~~~aF~~C~~L~~i~~~~~~  368 (394)
T 4gt6_A          334 EQLERIAIPSSVTKIPESAFSNCTALNNIEYSGSR  368 (394)
T ss_dssp             TTCCEEEECTTCCBCCGGGGTTCTTCCEEEESSCH
T ss_pred             CCCCEEEECcccCEEhHhHhhCCCCCCEEEECCce
Confidence            88999988543 233 2468889999999998764

>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}

Probab=96.67  E-value=0.079  Score=55.06  Aligned_cols=66  Identities=12%  Similarity=0.251  Sum_probs=28.0

Q ss_pred             CCCcceEEEecCccccccCC--CCCCCCccEEEEccCCCCCCCchhhhcCCCCCcceEeeccCCCccccccccC
Q 039689          581 NSSLESLKIRSCNSLVSFPD--FALPSQLRTVTIKGCDALESLPEAWMQNSSTSLESLAIDSCDSLTYIARIQL  652 (763)
Q Consensus       581 l~~L~~L~l~~c~~l~~~~~--~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~  652 (763)
                      +..|+.+.+..+  ++.+..  +....+|+.+.+..  .+..++...+ ..+++|+.+.+.++ .++.++...|
T Consensus       239 ~~~L~~i~lp~~--v~~I~~~aF~~~~~l~~i~l~~--~i~~i~~~aF-~~c~~L~~i~l~~~-~i~~I~~~aF  306 (379)
T 4h09_A          239 MKALDEIAIPKN--VTSIGSFLLQNCTALKTLNFYA--KVKTVPYLLC-SGCSNLTKVVMDNS-AIETLEPRVF  306 (379)
T ss_dssp             CSSCCEEEECTT--CCEECTTTTTTCTTCCEEEECC--CCSEECTTTT-TTCTTCCEEEECCT-TCCEECTTTT
T ss_pred             CccceEEEcCCC--ccEeCccccceeehhccccccc--cceecccccc-cccccccccccccc-ccceehhhhh
Confidence            444555554321  333332  23334455555533  2334433322 44555555555433 3444444433

>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}

Probab=96.31  E-value=0.49  Score=48.96  Aligned_cols=127  Identities=13%  Similarity=0.209  Sum_probs=74.4

Q ss_pred             CCCcceEEEecCccccccCC--CCCCCCccEEEEccCCCCCCCchhhhcCCCCCcceEeeccCCCccccccccCCCCCcE
Q 039689          581 NSSLESLKIRSCNSLVSFPD--FALPSQLRTVTIKGCDALESLPEAWMQNSSTSLESLAIDSCDSLTYIARIQLPPSLKR  658 (763)
Q Consensus       581 l~~L~~L~l~~c~~l~~~~~--~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~L~~  658 (763)
                      +.+|+.+.+...  +..+..  +.....|+.+.+..+  ++.+....+ ..+.+|+.+.+..  .++.++...|.     
T Consensus       216 ~~~l~~i~~~~~--~~~i~~~~f~~~~~L~~i~lp~~--v~~I~~~aF-~~~~~l~~i~l~~--~i~~i~~~aF~-----  283 (379)
T 4h09_A          216 GKNLKKITITSG--VTTLGDGAFYGMKALDEIAIPKN--VTSIGSFLL-QNCTALKTLNFYA--KVKTVPYLLCS-----  283 (379)
T ss_dssp             CSSCSEEECCTT--CCEECTTTTTTCSSCCEEEECTT--CCEECTTTT-TTCTTCCEEEECC--CCSEECTTTTT-----
T ss_pred             ccccceeeeccc--eeEEccccccCCccceEEEcCCC--ccEeCcccc-ceeehhccccccc--cceeccccccc-----
Confidence            567777776432  344443  455677888888653  556655444 6677888887753  45566555442     


Q ss_pred             EEEecCCCCCCCccceEEecCCCCCccccCC----CCCCcCeEeeccCCCCccccCC-CCCCCCcCceecccCCCCcccc
Q 039689          659 LIIFRCDNLRFNSLRKLKISGGCPDLVSSPR----FPASLTELKISDMPSLERLSSI-GENLTSLKFLDLDNCPKLKYFS  733 (763)
Q Consensus       659 L~l~~c~~l~~~~L~~L~l~~~~~~l~~~~~----~~~~L~~L~l~~~~~l~~ip~~-~~~l~~L~~L~l~~c~~L~~l~  733 (763)
                               ...+|+.+.+.+  ..++.++.    .+.+|+.+.+..  .++.|+.. +.++++|+++.+.+  .++.+.
T Consensus       284 ---------~c~~L~~i~l~~--~~i~~I~~~aF~~c~~L~~i~lp~--~l~~I~~~aF~~C~~L~~i~ip~--~v~~I~  348 (379)
T 4h09_A          284 ---------GCSNLTKVVMDN--SAIETLEPRVFMDCVKLSSVTLPT--ALKTIQVYAFKNCKALSTISYPK--SITLIE  348 (379)
T ss_dssp             ---------TCTTCCEEEECC--TTCCEECTTTTTTCTTCCEEECCT--TCCEECTTTTTTCTTCCCCCCCT--TCCEEC
T ss_pred             ---------cccccccccccc--cccceehhhhhcCCCCCCEEEcCc--cccEEHHHHhhCCCCCCEEEECC--ccCEEc
Confidence                     223444555432  23444443    346788887764  47777653 36778888877743  355554


Q ss_pred             C
Q 039689          734 K  734 (763)
Q Consensus       734 ~  734 (763)
                      .
T Consensus       349 ~  349 (379)
T 4h09_A          349 S  349 (379)
T ss_dssp             T
T ss_pred             h
Confidence            3

>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*

Probab=95.83  E-value=0.0096  Score=50.99  Aligned_cols=52  Identities=19%  Similarity=0.172  Sum_probs=38.2

Q ss_pred             cEEEecCCCCC--ccCcccCCCCcccEEecCCCCchhcch-hhhhcccccEEeeccc
Q 039689          200 RVFSLRGYNIF--ELPKAIENLKHLRFLDLSTTKIEILRE-SINTLYNLHTLLLEDC  253 (763)
Q Consensus       200 r~L~L~~~~i~--~lp~~~~~l~~L~~L~L~~~~i~~lp~-~~~~L~~L~~L~L~~~  253 (763)
                      .+++.+++.++  .+|..+.  .+|++|+|++|.|+.+|. .|..+++|++|+|++|
T Consensus        11 ~~v~Cs~~~L~~~~vP~~lp--~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N   65 (130)
T 3rfe_A           11 TLVDCGRRGLTWASLPTAFP--VDTTELVLTGNNLTALPPGLLDALPALRTAHLGAN   65 (130)
T ss_dssp             TEEECCSSCCCTTTSCSCCC--TTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSS
T ss_pred             CEEEeCCCCCccccCCCCCC--cCCCEEECCCCcCCccChhhhhhccccCEEEecCC
Confidence            36777788877  7776543  468888888888888864 4577788888888775

>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*

Probab=94.35  E-value=0.024  Score=48.45  Aligned_cols=53  Identities=15%  Similarity=0.182  Sum_probs=45.1

Q ss_pred             cEEecCCCCch--hcchhhhhcccccEEeecccccccccccc-ccCcccccccccCCcc
Q 039689          223 RFLDLSTTKIE--ILRESINTLYNLHTLLLEDCRRLKKLCKD-MGNLTKLHHLNNSNVG  278 (763)
Q Consensus       223 ~~L~L~~~~i~--~lp~~~~~L~~L~~L~L~~~~~l~~lp~~-i~~L~~L~~L~l~~~~  278 (763)
                      .+++.+++.++  .+|..+.  .+|++|+|++ +.+..+|.+ |..+++|+.|+|++|.
T Consensus        11 ~~v~Cs~~~L~~~~vP~~lp--~~l~~L~Ls~-N~l~~l~~~~f~~l~~L~~L~L~~NP   66 (130)
T 3rfe_A           11 TLVDCGRRGLTWASLPTAFP--VDTTELVLTG-NNLTALPPGLLDALPALRTAHLGANP   66 (130)
T ss_dssp             TEEECCSSCCCTTTSCSCCC--TTCSEEECTT-SCCSSCCTTTGGGCTTCCEEECCSSC
T ss_pred             CEEEeCCCCCccccCCCCCC--cCCCEEECCC-CcCCccChhhhhhccccCEEEecCCC
Confidence            47888999998  8886543  4799999999 689999876 7899999999999986

>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1

Probab=91.01  E-value=0.24  Score=45.34  Aligned_cols=83  Identities=23%  Similarity=0.197  Sum_probs=56.4

Q ss_pred             CCCCcccEEEecCC-CCCc-----cCcccCCCCcccEEecCCCCchh-----cchhhhhcccccEEeecccccccc----
Q 039689          194 LNLPRLRVFSLRGY-NIFE-----LPKAIENLKHLRFLDLSTTKIEI-----LRESINTLYNLHTLLLEDCRRLKK----  258 (763)
Q Consensus       194 ~~l~~Lr~L~L~~~-~i~~-----lp~~~~~l~~L~~L~L~~~~i~~-----lp~~~~~L~~L~~L~L~~~~~l~~----  258 (763)
                      .+-+.|+.|+|+++ .|..     +-+.+..-+.|+.|+|++|.|..     +-+.+..=+.|++|+|++| .+..    
T Consensus        38 ~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N-~Ig~~Ga~  116 (197)
T 1pgv_A           38 EDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESN-FLTPELLA  116 (197)
T ss_dssp             TTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSS-BCCHHHHH
T ss_pred             hcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCC-cCCHHHHH
Confidence            56678888898875 6653     33556677888999999888863     4455666678888988884 4432    


Q ss_pred             -ccccccCcccccccccCCc
Q 039689          259 -LCKDMGNLTKLHHLNNSNV  277 (763)
Q Consensus       259 -lp~~i~~L~~L~~L~l~~~  277 (763)
                       +-+.+..-+.|++|+++++
T Consensus       117 ala~aL~~N~tL~~L~L~n~  136 (197)
T 1pgv_A          117 RLLRSTLVTQSIVEFKADNQ  136 (197)
T ss_dssp             HHHHHTTTTCCCSEEECCCC
T ss_pred             HHHHHHhhCCceeEEECCCC
Confidence             2333444556788887754

>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1

Probab=89.47  E-value=0.13  Score=47.06  Aligned_cols=90  Identities=19%  Similarity=0.193  Sum_probs=63.8

Q ss_pred             hhhccCCCCcccEEEecCCCCCc-----cCcccCCCCcccEEecCCCCchh-----cchhhhhcccccEEeecccc--cc
Q 039689          189 VLQRLLNLPRLRVFSLRGYNIFE-----LPKAIENLKHLRFLDLSTTKIEI-----LRESINTLYNLHTLLLEDCR--RL  256 (763)
Q Consensus       189 ~~~~~~~l~~Lr~L~L~~~~i~~-----lp~~~~~l~~L~~L~L~~~~i~~-----lp~~~~~L~~L~~L~L~~~~--~l  256 (763)
                      +.+.+..-..|+.|+|++|.+..     +-+.+..-+.|++|+|++|.|..     +-+.+..=+.|+.|+|+++.  .+
T Consensus        62 la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~ala~aL~~N~tL~~L~L~n~~~~~i  141 (197)
T 1pgv_A           62 LIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLLRSTLVTQSIVEFKADNQRQSVL  141 (197)
T ss_dssp             HHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHHHHTTTTCCCSEEECCCCSSCCC
T ss_pred             HHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHHHHHHHhhCCceeEEECCCCcCcCc
Confidence            55666778899999999999874     33445566889999999999873     34455555779999998642  22


Q ss_pred             c-----cccccccCcccccccccCCcc
Q 039689          257 K-----KLCKDMGNLTKLHHLNNSNVG  278 (763)
Q Consensus       257 ~-----~lp~~i~~L~~L~~L~l~~~~  278 (763)
                      .     .+...+..=+.|+.|+++.+.
T Consensus       142 g~~g~~~ia~aL~~N~tL~~L~l~~~~  168 (197)
T 1pgv_A          142 GNQVEMDMMMAIEENESLLRVGISFAS  168 (197)
T ss_dssp             CHHHHHHHHHHHHHCSSCCEEECCCCC
T ss_pred             CHHHHHHHHHHHHhCCCcCeEeccCCC
Confidence            2     233334455678888887654

>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20

Probab=87.73  E-value=2.1  Score=43.40  Aligned_cols=116  Identities=12%  Similarity=0.061  Sum_probs=68.6

Q ss_pred             HHHHHHcCCChHHHHHHHHHhcCCCChHHHHH-HHhhhcccccCCccChHHHHH-HHHh--cCCHhHHHHhhhhcccCCC
Q 039689           27 QKIAMKCKGLPLAAKTLGGLLRGKDDPKDWEN-VLKTEVWDLADDKCDIIPALR-VSYH--FLPPQLKQCFAYCSLFPKD  102 (763)
Q Consensus        27 ~~i~~~c~GlPlal~~~g~~L~~~~~~~~W~~-~l~~~~~~~~~~~~~i~~~l~-~Sy~--~L~~~~k~~fl~~~~fp~~  102 (763)
                      .+|++.|+|.|.++..+|..+....+...|-. +.+...       ..+...+. +.|+  .|++..+..+..+|+   |
T Consensus       233 ~~i~~~t~G~P~~l~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~l~~~~~~~~~l~~~~~~~l~~la~---g  302 (357)
T 2fna_A          233 EVVYEKIGGIPGWLTYFGFIYLDNKNLDFAINQTLEYAK-------KLILKEFENFLHGREIARKRYLNIMRTLSK---C  302 (357)
T ss_dssp             HHHHHHHCSCHHHHHHHHHHHHHHCCHHHHHHHHHHHHH-------HHHHHHHHHHHTTCGGGHHHHHHHHHHHTT---C
T ss_pred             HHHHHHhCCCHHHHHHHHHHHccccchHHHHHHHHHHHH-------HHHHHHHHHHhhccccccHHHHHHHHHHHc---C
Confidence            78999999999999999988754323333321 111110       01112222 2221  677889999999998   3


Q ss_pred             CccCHHHHHHHHH-HcCC-cccCCCcccHHHHHHHHHHHHHHCCCcccccCCCCccee-chhHHHH
Q 039689          103 HEFQKEQIILLWA-AEGF-LHQENSKRKMEDLGREFVEELHSRSLFHQSTYDASRFVM-HDLINDL  165 (763)
Q Consensus       103 ~~i~~~~li~~w~-~~g~-~~~~~~~~~~~~~~~~~~~~L~~~~ll~~~~~~~~~~~m-hdli~~~  165 (763)
                      .  +...+..... ..|. +.        ......+++.|++++++...+   +.+.+ |.++++.
T Consensus       303 ~--~~~~l~~~~~~~~g~~~~--------~~~~~~~L~~L~~~gli~~~~---~~y~f~~~~~~~~  355 (357)
T 2fna_A          303 G--KWSDVKRALELEEGIEIS--------DSEIYNYLTQLTKHSWIIKEG---EKYCPSEPLISLA  355 (357)
T ss_dssp             B--CHHHHHHHHHHHHCSCCC--------HHHHHHHHHHHHHTTSEEESS---SCEEESSHHHHHH
T ss_pred             C--CHHHHHHHHHHhcCCCCC--------HHHHHHHHHHHHhCCCEEecC---CEEEecCHHHHHh
Confidence            2  5566554331 2231 11        134567899999999997653   34554 5666654

>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}

Probab=87.05  E-value=2.5  Score=42.71  Aligned_cols=119  Identities=13%  Similarity=0.054  Sum_probs=68.1

Q ss_pred             HHHHHHHHHcCCChHHHHHHHHHhcCCCChHHHH-HHHhhhcccccCCccChHHHH-HHHHhcCCHhHHHHhhhhcccCC
Q 039689           24 EVGQKIAMKCKGLPLAAKTLGGLLRGKDDPKDWE-NVLKTEVWDLADDKCDIIPAL-RVSYHFLPPQLKQCFAYCSLFPK  101 (763)
Q Consensus        24 ~~~~~i~~~c~GlPlal~~~g~~L~~~~~~~~W~-~~l~~~~~~~~~~~~~i~~~l-~~Sy~~L~~~~k~~fl~~~~fp~  101 (763)
                      +.+.+|++.|+|.|.++..++..+....+...|- .+.+....       .+...+ .+.+ . ++..+..+..+|+   
T Consensus       226 ~~~~~i~~~tgG~P~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~l~~l~~-~-~~~~~~~l~~la~---  293 (350)
T 2qen_A          226 NEIEEAVELLDGIPGWLVVFGVEYLRNGDFGRAMKRTLEVAKG-------LIMGELEELRR-R-SPRYVDILRAIAL---  293 (350)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHH-------HHHHHHHHHHH-H-CHHHHHHHHHHHT---
T ss_pred             HHHHHHHHHhCCCHHHHHHHHHHHhccccHhHHHHHHHHHHHH-------HHHHHHHHHHh-C-ChhHHHHHHHHHh---
Confidence            5678999999999999999987654321222221 11111100       011111 1222 2 6788999998887   


Q ss_pred             CCccCHHHHHHHHHHcCCcccCCCcccHHHHHHHHHHHHHHCCCcccccCCCCccee-chhHHHH
Q 039689          102 DHEFQKEQIILLWAAEGFLHQENSKRKMEDLGREFVEELHSRSLFHQSTYDASRFVM-HDLINDL  165 (763)
Q Consensus       102 ~~~i~~~~li~~w~~~g~~~~~~~~~~~~~~~~~~~~~L~~~~ll~~~~~~~~~~~m-hdli~~~  165 (763)
                      | ..+...+........-  .    .+ ......+++.|++++++...+   +.+.+ |.++++.
T Consensus       294 g-~~~~~~l~~~~~~~~~--~----~~-~~~~~~~l~~L~~~gli~~~~---~~y~~~~p~~~~~  347 (350)
T 2qen_A          294 G-YNRWSLIRDYLAVKGT--K----IP-EPRLYALLENLKKMNWIVEED---NTYKIADPVVATV  347 (350)
T ss_dssp             T-CCSHHHHHHHHHHTTC--C----CC-HHHHHHHHHHHHHTTSEEEET---TEEEESSHHHHHH
T ss_pred             C-CCCHHHHHHHHHHHhC--C----CC-HHHHHHHHHHHHhCCCEEecC---CEEEEecHHHHHH
Confidence            3 2456666655433210  1    01 134567899999999998752   34555 4555544

>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*

Probab=82.52  E-value=2  Score=44.68  Aligned_cols=125  Identities=9%  Similarity=-0.085  Sum_probs=69.2

Q ss_pred             HHHHHHHHHHcC------CChHHHHHHHHH-hc-----CC--CChHHHHHHHhhhcccccCCccChHHHHHHHHhcCCHh
Q 039689           23 KEVGQKIAMKCK------GLPLAAKTLGGL-LR-----GK--DDPKDWENVLKTEVWDLADDKCDIIPALRVSYHFLPPQ   88 (763)
Q Consensus        23 ~~~~~~i~~~c~------GlPlal~~~g~~-L~-----~~--~~~~~W~~~l~~~~~~~~~~~~~i~~~l~~Sy~~L~~~   88 (763)
                      .+.+..|++.|+      |.|..+..+... ..     +.  -+.+.+..++.....         ...+.-+++.|+++
T Consensus       239 ~~~~~~i~~~~~~~~~~~G~p~~~~~l~~~a~~~a~~~~~~~i~~~~v~~~~~~~~~---------~~~~~~~l~~l~~~  309 (412)
T 1w5s_A          239 PRHLELISDVYGEDKGGDGSARRAIVALKMACEMAEAMGRDSLSEDLVRKAVSENEA---------ASIQTHELEALSIH  309 (412)
T ss_dssp             HHHHHHHHHHHCGGGTSCCCHHHHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHC---------------CCSSSSSCHH
T ss_pred             hHHHHHHHHHHHHhccCCCcHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhc---------cchHHHHHHcCCHH
Confidence            356788889999      999655554432 11     11  123444444443210         12344457889999


Q ss_pred             HHHHhhhhcccC--CCCccCHHHHHHHHHH-----cCCcccCCCcccHHHHHHHHHHHHHHCCCccccc---CCCCccee
Q 039689           89 LKQCFAYCSLFP--KDHEFQKEQIILLWAA-----EGFLHQENSKRKMEDLGREFVEELHSRSLFHQST---YDASRFVM  158 (763)
Q Consensus        89 ~k~~fl~~~~fp--~~~~i~~~~li~~w~~-----~g~~~~~~~~~~~~~~~~~~~~~L~~~~ll~~~~---~~~~~~~m  158 (763)
                      .+.++..+|.+.  .+..++..++...+..     .|.- .    . -......++++|++.+++....   +..+++++
T Consensus       310 ~~~~l~aia~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~----~-~~~~~~~~l~~L~~~gli~~~~~~~~~~g~~~~  383 (412)
T 1w5s_A          310 ELIILRLIAEATLGGMEWINAGLLRQRYEDASLTMYNVK-P----R-GYTQYHIYLKHLTSLGLVDAKPSGRGMRGRTTL  383 (412)
T ss_dssp             HHHHHHHHHHHHHTTCSSBCHHHHHHHHHHHHHHHSCCC-C----C-CHHHHHHHHHHHHHTTSEEEECC-------CCE
T ss_pred             HHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHhhcCCC-C----C-CHHHHHHHHHHHHhCCCEEeecccCCCCCceeE
Confidence            999998888764  3345666666554432     1211 0    0 1234567899999999997753   22344556


Q ss_pred             chhH
Q 039689          159 HDLI  162 (763)
Q Consensus       159 hdli  162 (763)
                      |++.
T Consensus       384 ~~l~  387 (412)
T 1w5s_A          384 FRLA  387 (412)
T ss_dssp             EEEC
T ss_pred             EEeC
Confidence            6554

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	763
d2a5yb3	277	c.37.1.20 (B:109-385) CED-4, NB-ARC domain {Caenor	2e-10
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	8e-05
d1a9na_	162	c.10.2.4 (A:) Splicesomal U2A' protein {Human (Hom	2e-04
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	0.002
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	0.004

>d2a5yb3 c.37.1.20 (B:109-385) CED-4, NB-ARC domain {Caenorhabditis elegans [TaxId: 6239]} Length = 277

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: CED-4, NB-ARC domain
species: Caenorhabditis elegans [TaxId: 6239]

 Score = 59.8 bits (144), Expect = 2e-10
 Identities = 15/92 (16%), Positives = 28/92 (30%), Gaps = 4/92 (4%)

Query: 4   ECYQKMTVCVCSLNMHQSLKEVGQKIAMKCKGLPLAAKTLGGLLRGKDDPKDWENVLKTE 63
           ECY  +      + + +  ++V  K      G P               PK +E + +  
Sbjct: 189 ECYDFLEAYGMPMPVGEKEEDVLNKTIELSSGNPATLMMFFKSCE----PKTFEKMAQLN 244

Query: 64  VWDLADDKCDIIPALRVSYHFLPPQLKQCFAY 95
               +     +      SY  L   L++C   
Sbjct: 245 NKLESRGLVGVECITPYSYKSLAMALQRCVEV 276

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 40.9 bits (95), Expect = 8e-05
 Identities = 20/94 (21%), Positives = 32/94 (34%), Gaps = 1/94 (1%)

Query: 200 RVFSLRGYNIFELPKAIENLKHLRFLDLSTTKIEILRESINTLYNLHTLLLEDCRRLKKL 259
           RV  L   ++  L   +E L  +  LDLS  ++  L  ++  L  L  L   D       
Sbjct: 1   RVLHLAHKDLTVLC-HLEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALENVD 59

Query: 260 CKDMGNLTKLHHLNNSNVGSLEEMLMLKSLVHLQ 293
                   +   L N+ +     +  L S   L 
Sbjct: 60  GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLV 93

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]} Length = 162

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.3 bits (93), Expect = 2e-04
 Identities = 26/104 (25%), Positives = 39/104 (37%), Gaps = 6/104 (5%)

Query: 193 LLNLPRLRVFSLRGYNIFELPKAIENLKHLRFLDLSTTKIEILRESINTLYNLHTLLLED 252
             N  R R   LRGY I  +      L     +D S  +I  L +    L  L TLL+ +
Sbjct: 14  YTNAVRDRELDLRGYKIPVIENLGATLDQFDAIDFSDNEIRKL-DGFPLLRRLKTLLVNN 72

Query: 253 CRRLKKL-----CKDMGNLTKLHHLNNSNVGSLEEMLMLKSLVH 291
            R  +                L + +   +G L+ +  LKSL +
Sbjct: 73  NRICRIGEGLDQALPDLTELILTNNSLVELGDLDPLASLKSLTY 116

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 38.8 bits (89), Expect = 0.002
 Identities = 19/82 (23%), Positives = 38/82 (46%), Gaps = 4/82 (4%)

Query: 195 NLPRLRVFSLRGYNIFELPKAIENLKHLRFLDLSTTKIEILRESINTLYNLHTLLLEDCR 254
           NL  L   +L   NI ++   + +L  L+ L  +  K+  +  S+  L N++ L     +
Sbjct: 305 NLKNLTYLTLYFNNISDIS-PVSSLTKLQRLFFANNKVSDV-SSLANLTNINWLSAGHNQ 362

Query: 255 RLKKLCKDMGNLTKLHHLNNSN 276
            +  L   + NLT++  L  ++
Sbjct: 363 -ISDL-TPLANLTRITQLGLND 382

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 37.5 bits (85), Expect = 0.004
 Identities = 16/80 (20%), Positives = 29/80 (36%), Gaps = 8/80 (10%)

Query: 195 NLPRLRVFSLRGYNIFELPKAIENLKHLRFLDLSTTKIEILRESINTLYNLHTLLLEDCR 254
             P L   ++    + ELP     L+    L  S   +  + E      NL  L +E   
Sbjct: 282 LPPSLEELNVSNNKLIELPALPPRLER---LIASFNHLAEVPELPQ---NLKQLHVEYN- 334

Query: 255 RLKKLCKDMGNLTKLHHLNN 274
            L++      ++  L  +N+
Sbjct: 335 PLREFPDIPESVEDL-RMNS 353

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	763
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	99.83
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	99.78
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	99.72
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	99.7
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	99.68
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	99.67
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	99.66
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	99.54
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	99.54
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	99.51
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.46
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	99.45
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	99.44
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	99.43
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.42
d2a5yb3	277	CED-4, NB-ARC domain {Caenorhabditis elegans [TaxI	99.39
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	99.35
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	99.32
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	99.29
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.26
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.26
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	99.25
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	99.25
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	99.18
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	99.15
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	99.14
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	99.03
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	98.98
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	98.96
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	98.93
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	98.91
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	98.89
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	98.88
d2ifga3	156	High affinity nerve growth factor receptor, N-term	98.8
d2ifga3	156	High affinity nerve growth factor receptor, N-term	98.51
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	98.15
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	97.72
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	97.71
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	97.53
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	95.91
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	95.76
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	95.29
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	94.12

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.83  E-value=9.1e-20  Score=192.03  Aligned_cols=90  Identities=20%  Similarity=0.350  Sum_probs=75.5

Q ss_pred             CCCcccEEEecCCCCCccCcccCCCCcccEEecCCCCchhcchhhhhcccccEEeeccccccccccccccCccccccccc
Q 039689          195 NLPRLRVFSLRGYNIFELPKAIENLKHLRFLDLSTTKIEILRESINTLYNLHTLLLEDCRRLKKLCKDMGNLTKLHHLNN  274 (763)
Q Consensus       195 ~l~~Lr~L~L~~~~i~~lp~~~~~l~~L~~L~L~~~~i~~lp~~~~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l  274 (763)
                      .+.+|++|+++++.|+.+ +.++.+++|++|+|++|.|+.+|+ ++++++|++|++++| .+..+++ ++++++|+.|++
T Consensus        42 ~l~~l~~L~l~~~~I~~l-~gl~~L~nL~~L~Ls~N~l~~l~~-l~~L~~L~~L~L~~n-~i~~i~~-l~~l~~L~~L~~  117 (384)
T d2omza2          42 DLDQVTTLQADRLGIKSI-DGVEYLNNLTQINFSNNQLTDITP-LKNLTKLVDILMNNN-QIADITP-LANLTNLTGLTL  117 (384)
T ss_dssp             HHTTCCEEECCSSCCCCC-TTGGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSS-CCCCCGG-GTTCTTCCEEEC
T ss_pred             HhCCCCEEECCCCCCCCc-cccccCCCCCEEeCcCCcCCCCcc-ccCCccccccccccc-ccccccc-cccccccccccc
Confidence            356799999999999988 568899999999999999999974 999999999999995 6777765 899999999999


Q ss_pred             CCcccccccccCCCc
Q 039689          275 SNVGSLEEMLMLKSL  289 (763)
Q Consensus       275 ~~~~~l~~l~~l~~L  289 (763)
                      +++. +..++.....
T Consensus       118 ~~~~-~~~~~~~~~~  131 (384)
T d2omza2         118 FNNQ-ITDIDPLKNL  131 (384)
T ss_dssp             CSSC-CCCCGGGTTC
T ss_pred             cccc-cccccccccc
Confidence            9887 5555443333

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.78  E-value=5e-18  Score=178.55  Aligned_cols=79  Identities=22%  Similarity=0.341  Sum_probs=66.6

Q ss_pred             CCCCcccEEecCCCCchhcchhhhhcccccEEeeccccccccccccccCcccccccccCCcccccccccCCCccCCCcee
Q 039689          217 ENLKHLRFLDLSTTKIEILRESINTLYNLHTLLLEDCRRLKKLCKDMGNLTKLHHLNNSNVGSLEEMLMLKSLVHLQGTL  296 (763)
Q Consensus       217 ~~l~~L~~L~L~~~~i~~lp~~~~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~l~~l~~L~~L~~~L  296 (763)
                      ..+.+|++|+++++.|+.+ ++++.|++|++|++++ +.+..+|+ ++++++|++|++++|. +..++.++++++|+ .+
T Consensus        41 ~~l~~l~~L~l~~~~I~~l-~gl~~L~nL~~L~Ls~-N~l~~l~~-l~~L~~L~~L~L~~n~-i~~i~~l~~l~~L~-~L  115 (384)
T d2omza2          41 TDLDQVTTLQADRLGIKSI-DGVEYLNNLTQINFSN-NQLTDITP-LKNLTKLVDILMNNNQ-IADITPLANLTNLT-GL  115 (384)
T ss_dssp             HHHTTCCEEECCSSCCCCC-TTGGGCTTCCEEECCS-SCCCCCGG-GTTCTTCCEEECCSSC-CCCCGGGTTCTTCC-EE
T ss_pred             HHhCCCCEEECCCCCCCCc-cccccCCCCCEEeCcC-CcCCCCcc-ccCCcccccccccccc-cccccccccccccc-cc
Confidence            4678899999999999988 5789999999999999 57888875 9999999999999998 77777677777776 55


Q ss_pred             eecC
Q 039689          297 EISR  300 (763)
Q Consensus       297 ~~~~  300 (763)
                      .+.+
T Consensus       116 ~~~~  119 (384)
T d2omza2         116 TLFN  119 (384)
T ss_dssp             ECCS
T ss_pred             cccc
Confidence            5443

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=99.72  E-value=7.3e-16  Score=159.56  Aligned_cols=72  Identities=26%  Similarity=0.297  Sum_probs=51.5

Q ss_pred             CcccEEEecCCCCCccCcccCCCCcccEEecCCCCchhcchhhhhcccccEEeeccccccccccccccCcccccccccCC
Q 039689          197 PRLRVFSLRGYNIFELPKAIENLKHLRFLDLSTTKIEILRESINTLYNLHTLLLEDCRRLKKLCKDMGNLTKLHHLNNSN  276 (763)
Q Consensus       197 ~~Lr~L~L~~~~i~~lp~~~~~l~~L~~L~L~~~~i~~lp~~~~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l~~  276 (763)
                      .++++|||+++.++.+|+.   +++|++|+|++|.|+++|..+   .+|+.|++++ +.+..++. +  .++|++|++++
T Consensus        38 ~~l~~LdLs~~~L~~lp~~---~~~L~~L~Ls~N~l~~lp~~~---~~L~~L~l~~-n~l~~l~~-l--p~~L~~L~L~~  107 (353)
T d1jl5a_          38 RQAHELELNNLGLSSLPEL---PPHLESLVASCNSLTELPELP---QSLKSLLVDN-NNLKALSD-L--PPLLEYLGVSN  107 (353)
T ss_dssp             HTCSEEECTTSCCSCCCSC---CTTCSEEECCSSCCSSCCCCC---TTCCEEECCS-SCCSCCCS-C--CTTCCEEECCS
T ss_pred             cCCCEEEeCCCCCCCCCCC---CCCCCEEECCCCCCcccccch---hhhhhhhhhh-cccchhhh-h--ccccccccccc
Confidence            3688899999999888864   467888899988888888654   4677778877 45555543 1  13577777776


Q ss_pred             cc
Q 039689          277 VG  278 (763)
Q Consensus       277 ~~  278 (763)
                      |.
T Consensus       108 n~  109 (353)
T d1jl5a_         108 NQ  109 (353)
T ss_dssp             SC
T ss_pred             cc
Confidence            65

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=99.70  E-value=8.1e-16  Score=159.22  Aligned_cols=75  Identities=21%  Similarity=0.251  Sum_probs=60.6

Q ss_pred             CCcccEEEecCCCCCccCcccCCCCcccEEecCCCCchhcchhhhhcccccEEeeccccccccccccccCcccccccccC
Q 039689          196 LPRLRVFSLRGYNIFELPKAIENLKHLRFLDLSTTKIEILRESINTLYNLHTLLLEDCRRLKKLCKDMGNLTKLHHLNNS  275 (763)
Q Consensus       196 l~~Lr~L~L~~~~i~~lp~~~~~l~~L~~L~L~~~~i~~lp~~~~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l~  275 (763)
                      .++|++|++++|+++.+|+.+   .+|+.|++++|.++.++.-   .+.|++|++++ +.+..+|. ++.+++|++|+++
T Consensus        57 ~~~L~~L~Ls~N~l~~lp~~~---~~L~~L~l~~n~l~~l~~l---p~~L~~L~L~~-n~l~~lp~-~~~l~~L~~L~l~  128 (353)
T d1jl5a_          57 PPHLESLVASCNSLTELPELP---QSLKSLLVDNNNLKALSDL---PPLLEYLGVSN-NQLEKLPE-LQNSSFLKIIDVD  128 (353)
T ss_dssp             CTTCSEEECCSSCCSSCCCCC---TTCCEEECCSSCCSCCCSC---CTTCCEEECCS-SCCSSCCC-CTTCTTCCEEECC
T ss_pred             CCCCCEEECCCCCCcccccch---hhhhhhhhhhcccchhhhh---ccccccccccc-cccccccc-hhhhccceeeccc
Confidence            468999999999999998754   5788888998888877531   14699999998 57888885 7889999999998


Q ss_pred             Ccc
Q 039689          276 NVG  278 (763)
Q Consensus       276 ~~~  278 (763)
                      ++.
T Consensus       129 ~~~  131 (353)
T d1jl5a_         129 NNS  131 (353)
T ss_dssp             SSC
T ss_pred             ccc
Confidence            886

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=99.68  E-value=1.5e-17  Score=169.25  Aligned_cols=106  Identities=20%  Similarity=0.279  Sum_probs=80.0

Q ss_pred             HHHHHhcCceE--EecCCCCCcchhhhhhccCCCCcccEEEecCCCCC---ccCcccCCCCcccEEecCC-CCch-hcch
Q 039689          165 LTRWAAGETCF--RMEDTPEGERRQNVLQRLLNLPRLRVFSLRGYNIF---ELPKAIENLKHLRFLDLST-TKIE-ILRE  237 (763)
Q Consensus       165 ~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~---~lp~~~~~l~~L~~L~L~~-~~i~-~lp~  237 (763)
                      ++.|....+|+  .|.|+.++.        -..-.+++.|+|+++.+.   .+|++++.+++|++|+|++ |.++ .+|+
T Consensus        24 l~sW~~~~d~C~~~w~gv~C~~--------~~~~~~v~~L~L~~~~l~g~~~lp~~l~~L~~L~~L~Ls~~N~l~g~iP~   95 (313)
T d1ogqa_          24 LSSWLPTTDCCNRTWLGVLCDT--------DTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPP   95 (313)
T ss_dssp             GTTCCTTSCTTTTCSTTEEECC--------SSSCCCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCG
T ss_pred             CCCCCCCCCCCCCcCCCeEEeC--------CCCcEEEEEEECCCCCCCCCCCCChHHhcCcccccccccccccccccccc
Confidence            34565555555  366554432        122347889999999876   4789999999999999986 6776 7899


Q ss_pred             hhhhcccccEEeeccccccccccccccCcccccccccCCcc
Q 039689          238 SINTLYNLHTLLLEDCRRLKKLCKDMGNLTKLHHLNNSNVG  278 (763)
Q Consensus       238 ~~~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l~~~~  278 (763)
                      +|++|++|++|+|++|......|..+..+.+|+++++++|.
T Consensus        96 ~i~~L~~L~~L~Ls~N~l~~~~~~~~~~~~~L~~l~l~~N~  136 (313)
T d1ogqa_          96 AIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNA  136 (313)
T ss_dssp             GGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSE
T ss_pred             ccccccccchhhhccccccccccccccchhhhccccccccc
Confidence            99999999999999965444555668889999999998886

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.67  E-value=6.4e-16  Score=156.32  Aligned_cols=265  Identities=17%  Similarity=0.195  Sum_probs=124.3

Q ss_pred             cccEEEecCCCCCccCcccCCCCcccEEecCCCCchhcch-hhhhcccccEEeeccccccccc-cccccCcccccccccC
Q 039689          198 RLRVFSLRGYNIFELPKAIENLKHLRFLDLSTTKIEILRE-SINTLYNLHTLLLEDCRRLKKL-CKDMGNLTKLHHLNNS  275 (763)
Q Consensus       198 ~Lr~L~L~~~~i~~lp~~~~~l~~L~~L~L~~~~i~~lp~-~~~~L~~L~~L~L~~~~~l~~l-p~~i~~L~~L~~L~l~  275 (763)
                      ..++++-++.+++.+|..+.  +++++|+|++|.|+++|+ +|.++++|++|++++|. +..+ |..|.++++|++|+++
T Consensus        11 ~~~~~~C~~~~L~~lP~~l~--~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~l~~n~-~~~i~~~~f~~l~~L~~L~l~   87 (305)
T d1xkua_          11 HLRVVQCSDLGLEKVPKDLP--PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNK-ISKISPGAFAPLVKLERLYLS   87 (305)
T ss_dssp             ETTEEECTTSCCCSCCCSCC--TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSC-CCCBCTTTTTTCTTCCEEECC
T ss_pred             cCCEEEecCCCCCccCCCCC--CCCCEEECcCCcCCCcChhHhhcccccccccccccc-ccccchhhhhCCCccCEeccc
Confidence            34555555556666665543  456666666666666654 45666666666666643 3333 4446666666666666


Q ss_pred             CcccccccccCCCccCCCceeeecCcccccCcccchhhhhcCcccccceEEeeccCCCCCCccHHHHhhcCCCCCCceEE
Q 039689          276 NVGSLEEMLMLKSLVHLQGTLEISRLENVKGVGDASEVQLNSKVNLKALYLQWGVRDAVEPKTETQVIDMLKPHQKLELT  355 (763)
Q Consensus       276 ~~~~l~~l~~l~~L~~L~~~L~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~l~~l~~L~L~  355 (763)
                      +|. ++.+|.- ....++ .+...+.    .........+.....+..+....+.....     ......+..       
T Consensus        88 ~n~-l~~l~~~-~~~~l~-~L~~~~n----~l~~l~~~~~~~~~~~~~l~~~~n~~~~~-----~~~~~~~~~-------  148 (305)
T d1xkua_          88 KNQ-LKELPEK-MPKTLQ-ELRVHEN----EITKVRKSVFNGLNQMIVVELGTNPLKSS-----GIENGAFQG-------  148 (305)
T ss_dssp             SSC-CSBCCSS-CCTTCC-EEECCSS----CCCBBCHHHHTTCTTCCEEECCSSCCCGG-----GBCTTGGGG-------
T ss_pred             CCc-cCcCccc-hhhhhh-hhhcccc----chhhhhhhhhhcccccccccccccccccc-----CCCcccccc-------
Confidence            665 5555431 112222 2222211    11111222233333333333322210000     000011111       


Q ss_pred             EeeeCCCCCCCccCCCCCCCceEEEEeccCCCCCCCCCCCCCCCCcceecccCCceEeCccccCCCcCCCCCCcceeecc
Q 039689          356 ITGYGGTKFPIWLGDSLFSKLMLLKFDNCGTCTSLPSVGQLPFLKDPVISGMGRVKIVGSEFYGSSCSVSFPSLETLFFV  435 (763)
Q Consensus       356 ~~~~~~~~~p~~~~~~~~~~L~~L~l~~~~~~~~l~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~f~~L~~L~l~  435 (763)
                                       +++|+.+++++|.. ..++ ...+++|+.|+++++.........|.+      ++.++.|.+.
T Consensus       149 -----------------l~~L~~l~l~~n~l-~~l~-~~~~~~L~~L~l~~n~~~~~~~~~~~~------~~~l~~L~~s  203 (305)
T d1xkua_         149 -----------------MKKLSYIRIADTNI-TTIP-QGLPPSLTELHLDGNKITKVDAASLKG------LNNLAKLGLS  203 (305)
T ss_dssp             -----------------CTTCCEEECCSSCC-CSCC-SSCCTTCSEEECTTSCCCEECTGGGTT------CTTCCEEECC
T ss_pred             -----------------ccccCccccccCCc-cccC-cccCCccCEEECCCCcCCCCChhHhhc------cccccccccc
Confidence                             33444444444421 1122 112344444444444333333222211      3444444444


Q ss_pred             ccchhhhcCCC---CcCCcccEEEEecCc--chhhcCCCCCcccEEEEecCCcccccC--CCccccceeccccchhhhhh
Q 039689          436 DICSKLQGTLP---ERLLLLEKLNIFRCE--QLLVTLQCLPALRELEIDGCKGVVLSS--PTDLSSLKLVHSRDMAKEVF  508 (763)
Q Consensus       436 ~~~~~l~~~~~---~~~~~L~~L~l~~~~--~l~~~l~~l~~L~~L~l~~~~~~~~~~--~~~L~~L~~~~~~~~~~~~~  508 (763)
                      +  +.+.+..+   ..+++|++|++++|.  .++..+..+++|++|++++|+...+..  +..              ...
T Consensus       204 ~--n~l~~~~~~~~~~l~~L~~L~L~~N~L~~lp~~l~~l~~L~~L~Ls~N~i~~i~~~~f~~--------------~~~  267 (305)
T d1xkua_         204 F--NSISAVDNGSLANTPHLRELHLNNNKLVKVPGGLADHKYIQVVYLHNNNISAIGSNDFCP--------------PGY  267 (305)
T ss_dssp             S--SCCCEECTTTGGGSTTCCEEECCSSCCSSCCTTTTTCSSCCEEECCSSCCCCCCTTSSSC--------------SSC
T ss_pred             c--ccccccccccccccccceeeecccccccccccccccccCCCEEECCCCccCccChhhccC--------------cch
Confidence            3  12221111   235667777777664  334467789999999999987554321  111              111


Q ss_pred             cCCCCCCceEEEeccCC
Q 039689          509 EQGLPKLERLEIQHVRE  525 (763)
Q Consensus       509 ~~~~~~L~~L~l~~~~~  525 (763)
                      ....++|+.|++++|+.
T Consensus       268 ~~~~~~L~~L~L~~N~~  284 (305)
T d1xkua_         268 NTKKASYSGVSLFSNPV  284 (305)
T ss_dssp             CTTSCCCSEEECCSSSS
T ss_pred             hcccCCCCEEECCCCcC
Confidence            25578899999999874

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=99.66  E-value=8.6e-18  Score=170.98  Aligned_cols=104  Identities=21%  Similarity=0.259  Sum_probs=88.9

Q ss_pred             hhhccCCCCcccEEEecC-CCCC-ccCcccCCCCcccEEecCCCCchhc-chhhhhcccccEEeeccccccccccccccC
Q 039689          189 VLQRLLNLPRLRVFSLRG-YNIF-ELPKAIENLKHLRFLDLSTTKIEIL-RESINTLYNLHTLLLEDCRRLKKLCKDMGN  265 (763)
Q Consensus       189 ~~~~~~~l~~Lr~L~L~~-~~i~-~lp~~~~~l~~L~~L~L~~~~i~~l-p~~~~~L~~L~~L~L~~~~~l~~lp~~i~~  265 (763)
                      +|.++.++++|++|+|++ |.+. .+|.+|+++++|++|+|++|.+..+ |..+..+.+|+++++++|.....+|..+++
T Consensus        68 lp~~l~~L~~L~~L~Ls~~N~l~g~iP~~i~~L~~L~~L~Ls~N~l~~~~~~~~~~~~~L~~l~l~~N~~~~~~p~~l~~  147 (313)
T d1ogqa_          68 IPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISS  147 (313)
T ss_dssp             CCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGG
T ss_pred             CChHHhcCccccccccccccccccccccccccccccchhhhccccccccccccccchhhhcccccccccccccCchhhcc
Confidence            678899999999999997 6665 7899999999999999999999976 566899999999999998888889999999


Q ss_pred             cccccccccCCccccccccc-CCCccCC
Q 039689          266 LTKLHHLNNSNVGSLEEMLM-LKSLVHL  292 (763)
Q Consensus       266 L~~L~~L~l~~~~~l~~l~~-l~~L~~L  292 (763)
                      +++|+++++++|.....+|. +..+..+
T Consensus       148 l~~L~~l~l~~n~l~~~ip~~~~~l~~l  175 (313)
T d1ogqa_         148 LPNLVGITFDGNRISGAIPDSYGSFSKL  175 (313)
T ss_dssp             CTTCCEEECCSSCCEEECCGGGGCCCTT
T ss_pred             Ccccceeecccccccccccccccccccc
Confidence            99999999999983334553 4444444

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.54  E-value=1.7e-13  Score=138.16  Aligned_cols=240  Identities=16%  Similarity=0.186  Sum_probs=149.1

Q ss_pred             EEEeeeCCCCCCCccCCCCCCCceEEEEeccCCCCCCC--CCCCCCCCCcceecccCCceEeCccccCCCcCCCCCCcce
Q 039689          354 LTITGYGGTKFPIWLGDSLFSKLMLLKFDNCGTCTSLP--SVGQLPFLKDPVISGMGRVKIVGSEFYGSSCSVSFPSLET  431 (763)
Q Consensus       354 L~~~~~~~~~~p~~~~~~~~~~L~~L~l~~~~~~~~l~--~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~f~~L~~  431 (763)
                      ++.++...+.+|..+    ++++++|++++|. ++.++  .+..+++|++|+++++......+..|.      .+++|++
T Consensus        15 ~~C~~~~L~~lP~~l----~~~l~~L~Ls~N~-i~~l~~~~f~~l~~L~~L~l~~n~~~~i~~~~f~------~l~~L~~   83 (305)
T d1xkua_          15 VQCSDLGLEKVPKDL----PPDTALLDLQNNK-ITEIKDGDFKNLKNLHTLILINNKISKISPGAFA------PLVKLER   83 (305)
T ss_dssp             EECTTSCCCSCCCSC----CTTCCEEECCSSC-CCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTT------TCTTCCE
T ss_pred             EEecCCCCCccCCCC----CCCCCEEECcCCc-CCCcChhHhhccccccccccccccccccchhhhh------CCCccCE
Confidence            344445567788766    4689999999985 45555  588899999999998776654444443      3778888


Q ss_pred             eeccccchhhhcCCCCcCCcccEEEEecCcch---hhcCCCCCcccEEEEecCCcccccCCCccccceeccccchhhhhh
Q 039689          432 LFFVDICSKLQGTLPERLLLLEKLNIFRCEQL---LVTLQCLPALRELEIDGCKGVVLSSPTDLSSLKLVHSRDMAKEVF  508 (763)
Q Consensus       432 L~l~~~~~~l~~~~~~~~~~L~~L~l~~~~~l---~~~l~~l~~L~~L~l~~~~~~~~~~~~~L~~L~~~~~~~~~~~~~  508 (763)
                      |++.+  +.+.......++.+..|...++...   ...+.....+..+....+......                .....
T Consensus        84 L~l~~--n~l~~l~~~~~~~l~~L~~~~n~l~~l~~~~~~~~~~~~~l~~~~n~~~~~~----------------~~~~~  145 (305)
T d1xkua_          84 LYLSK--NQLKELPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSG----------------IENGA  145 (305)
T ss_dssp             EECCS--SCCSBCCSSCCTTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGG----------------BCTTG
T ss_pred             ecccC--CccCcCccchhhhhhhhhccccchhhhhhhhhhccccccccccccccccccC----------------CCccc
Confidence            88876  3444333345566777776665421   112334555555555554322211                11122


Q ss_pred             cCCCCCCceEEEeccCCccccccccCcCC-ccccccCceeeccCCchhhhcceeeeccCCCcccccchhhhcCCCCcceE
Q 039689          509 EQGLPKLERLEIQHVREQTYLWRSETRLP-QDIRSLNRLQISRCPQLISLLRTVKIEDCNALESLPEAWMHNSNSSLESL  587 (763)
Q Consensus       509 ~~~~~~L~~L~l~~~~~l~~l~~~~~~~p-~~l~~L~~L~l~~~~~l~~~L~~L~l~~~~~l~~l~~~~~~~~l~~L~~L  587 (763)
                      +..+++|+.+.+++|...        .+| ..+++|+.               |++++|......+.. + ..++.+++|
T Consensus       146 ~~~l~~L~~l~l~~n~l~--------~l~~~~~~~L~~---------------L~l~~n~~~~~~~~~-~-~~~~~l~~L  200 (305)
T d1xkua_         146 FQGMKKLSYIRIADTNIT--------TIPQGLPPSLTE---------------LHLDGNKITKVDAAS-L-KGLNNLAKL  200 (305)
T ss_dssp             GGGCTTCCEEECCSSCCC--------SCCSSCCTTCSE---------------EECTTSCCCEECTGG-G-TTCTTCCEE
T ss_pred             cccccccCccccccCCcc--------ccCcccCCccCE---------------EECCCCcCCCCChhH-h-hcccccccc
Confidence            355677888888877543        232 22344444               444443333333333 2 237888999


Q ss_pred             EEecCccccccCC--CCCCCCccEEEEccCCCCCCCchhhhcCCCCCcceEeeccCCCccccccccC
Q 039689          588 KIRSCNSLVSFPD--FALPSQLRTVTIKGCDALESLPEAWMQNSSTSLESLAIDSCDSLTYIARIQL  652 (763)
Q Consensus       588 ~l~~c~~l~~~~~--~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~  652 (763)
                      ++++|. +..++.  +..+++|++|++++| .++.+|.++  ..+++|+.|++++| +++.++...|
T Consensus       201 ~~s~n~-l~~~~~~~~~~l~~L~~L~L~~N-~L~~lp~~l--~~l~~L~~L~Ls~N-~i~~i~~~~f  262 (305)
T d1xkua_         201 GLSFNS-ISAVDNGSLANTPHLRELHLNNN-KLVKVPGGL--ADHKYIQVVYLHNN-NISAIGSNDF  262 (305)
T ss_dssp             ECCSSC-CCEECTTTGGGSTTCCEEECCSS-CCSSCCTTT--TTCSSCCEEECCSS-CCCCCCTTSS
T ss_pred             cccccc-ccccccccccccccceeeecccc-ccccccccc--ccccCCCEEECCCC-ccCccChhhc
Confidence            998764 455543  466788999999998 677888776  77899999999987 6887765544

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.54  E-value=4.2e-14  Score=139.22  Aligned_cols=196  Identities=18%  Similarity=0.172  Sum_probs=124.1

Q ss_pred             CCCcccEEEecCCCCCccCcccCCCCcccEEecCCCCchhcc-hhhhhcccccEEeeccccccccccccccCcccccccc
Q 039689          195 NLPRLRVFSLRGYNIFELPKAIENLKHLRFLDLSTTKIEILR-ESINTLYNLHTLLLEDCRRLKKLCKDMGNLTKLHHLN  273 (763)
Q Consensus       195 ~l~~Lr~L~L~~~~i~~lp~~~~~l~~L~~L~L~~~~i~~lp-~~~~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~  273 (763)
                      ....+...+.++++++.+|..+.  ++|++|+|++|.|+.+| .+|.++++|++|+|++ +.+..+|. ++.+++|++|+
T Consensus         8 ~~~~~~~v~C~~~~L~~iP~~lp--~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~L~~-N~l~~l~~-~~~l~~L~~L~   83 (266)
T d1p9ag_           8 KVASHLEVNCDKRNLTALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDR-AELTKLQV-DGTLPVLGTLD   83 (266)
T ss_dssp             CSTTCCEEECTTSCCSSCCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTT-SCCCEEEC-CSCCTTCCEEE
T ss_pred             ccCCCeEEEccCCCCCeeCcCcC--cCCCEEECcCCcCCCcCHHHhhcccccccccccc-cccccccc-ccccccccccc
Confidence            34555666888888999987764  68899999999999886 5688999999999999 47888875 68899999999


Q ss_pred             cCCcccccccccCCCccCCCceeeecCcccccCcccchhhhhcCcccccceEEeeccCCCCCCccHHHHhhcCCCCCCce
Q 039689          274 NSNVGSLEEMLMLKSLVHLQGTLEISRLENVKGVGDASEVQLNSKVNLKALYLQWGVRDAVEPKTETQVIDMLKPHQKLE  353 (763)
Q Consensus       274 l~~~~~l~~l~~l~~L~~L~~~L~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~l~~l~~L~  353 (763)
                      +++|. +...+.                            .+..+++|+.|+++.+.                       
T Consensus        84 Ls~N~-l~~~~~----------------------------~~~~l~~L~~L~l~~~~-----------------------  111 (266)
T d1p9ag_          84 LSHNQ-LQSLPL----------------------------LGQTLPALTVLDVSFNR-----------------------  111 (266)
T ss_dssp             CCSSC-CSSCCC----------------------------CTTTCTTCCEEECCSSC-----------------------
T ss_pred             ccccc-cccccc----------------------------ccccccccccccccccc-----------------------
Confidence            99887 433221                            12333455555554332                       


Q ss_pred             EEEeeeCCCCCCCccCCCCCCCceEEEEeccCCCCCCC--CCCCCCCCCcceecccCCceEeCccccCCCcCCCCCCcce
Q 039689          354 LTITGYGGTKFPIWLGDSLFSKLMLLKFDNCGTCTSLP--SVGQLPFLKDPVISGMGRVKIVGSEFYGSSCSVSFPSLET  431 (763)
Q Consensus       354 L~~~~~~~~~~p~~~~~~~~~~L~~L~l~~~~~~~~l~--~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~f~~L~~  431 (763)
                             ...++.... ..+.+++.|++++|... .++  .+..+++|+.++++++.........|      ..+++|++
T Consensus       112 -------~~~~~~~~~-~~l~~l~~L~l~~n~l~-~l~~~~~~~l~~l~~l~l~~N~l~~~~~~~~------~~l~~L~~  176 (266)
T d1p9ag_         112 -------LTSLPLGAL-RGLGELQELYLKGNELK-TLPPGLLTPTPKLEKLSLANNNLTELPAGLL------NGLENLDT  176 (266)
T ss_dssp             -------CCCCCSSTT-TTCTTCCEEECTTSCCC-CCCTTTTTTCTTCCEEECTTSCCSCCCTTTT------TTCTTCCE
T ss_pred             -------cceeecccc-ccccccccccccccccc-eeccccccccccchhcccccccccccCcccc------ccccccce
Confidence                   111221111 11677888888887543 333  45567778888777754332222222      12445555


Q ss_pred             eeccccchhhhcCCCCcCCcccEEEEecCcchhhcCCCCCcccEEEEecCC
Q 039689          432 LFFVDICSKLQGTLPERLLLLEKLNIFRCEQLLVTLQCLPALRELEIDGCK  482 (763)
Q Consensus       432 L~l~~~~~~l~~~~~~~~~~L~~L~l~~~~~l~~~l~~l~~L~~L~l~~~~  482 (763)
                      |++.+  +.+. .                  ++..+..+++|+.|++++|+
T Consensus       177 L~Ls~--N~L~-~------------------lp~~~~~~~~L~~L~L~~Np  206 (266)
T d1p9ag_         177 LLLQE--NSLY-T------------------IPKGFFGSHLLPFAFLHGNP  206 (266)
T ss_dssp             EECCS--SCCC-C------------------CCTTTTTTCCCSEEECCSCC
T ss_pred             eeccc--CCCc-c------------------cChhHCCCCCCCEEEecCCC
Confidence            55554  2222 2                  22344567888899998885

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.51  E-value=1.5e-13  Score=135.14  Aligned_cols=176  Identities=22%  Similarity=0.243  Sum_probs=119.5

Q ss_pred             cCCcccc-ccCceeeccCCchhhhcceeeeccCCCcccccchhhhcCCCCcceEEEecCccccccCCCCCCCCccEEEEc
Q 039689          535 RLPQDIR-SLNRLQISRCPQLISLLRTVKIEDCNALESLPEAWMHNSNSSLESLKIRSCNSLVSFPDFALPSQLRTVTIK  613 (763)
Q Consensus       535 ~~p~~l~-~L~~L~l~~~~~l~~~L~~L~l~~~~~l~~l~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~L~~L~l~  613 (763)
                      .+|..++ +++.|++++                +.++.+|...+. .+++|++|++++| .++.++.++.+++|++|+++
T Consensus        24 ~iP~~lp~~l~~L~Ls~----------------N~i~~l~~~~f~-~l~~L~~L~L~~N-~l~~l~~~~~l~~L~~L~Ls   85 (266)
T d1p9ag_          24 ALPPDLPKDTTILHLSE----------------NLLYTFSLATLM-PYTRLTQLNLDRA-ELTKLQVDGTLPVLGTLDLS   85 (266)
T ss_dssp             SCCSCCCTTCCEEECTT----------------SCCSEEEGGGGT-TCTTCCEEECTTS-CCCEEECCSCCTTCCEEECC
T ss_pred             eeCcCcCcCCCEEECcC----------------CcCCCcCHHHhh-ccccccccccccc-cccccccccccccccccccc
Confidence            5665553 555555555                778888766443 4889999999876 46788877888899999999


Q ss_pred             cCCCCCCCchhhhcCCCCCcceEeeccCCCccccccccCCCCCcEEEEecCCCCCCCccceEEecCCCCCccccCC----
Q 039689          614 GCDALESLPEAWMQNSSTSLESLAIDSCDSLTYIARIQLPPSLKRLIIFRCDNLRFNSLRKLKISGGCPDLVSSPR----  689 (763)
Q Consensus       614 ~~~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~L~~L~l~~c~~l~~~~L~~L~l~~~~~~l~~~~~----  689 (763)
                      +| .+...+..+  ..+++|+.|+++++ .+..++...+.              .+.+++.+.+++  +.+..++.    
T Consensus        86 ~N-~l~~~~~~~--~~l~~L~~L~l~~~-~~~~~~~~~~~--------------~l~~l~~L~l~~--n~l~~l~~~~~~  145 (266)
T d1p9ag_          86 HN-QLQSLPLLG--QTLPALTVLDVSFN-RLTSLPLGALR--------------GLGELQELYLKG--NELKTLPPGLLT  145 (266)
T ss_dssp             SS-CCSSCCCCT--TTCTTCCEEECCSS-CCCCCCSSTTT--------------TCTTCCEEECTT--SCCCCCCTTTTT
T ss_pred             cc-ccccccccc--cccccccccccccc-ccceeeccccc--------------cccccccccccc--cccceecccccc
Confidence            98 456666655  78899999999987 45554443321              234455555553  34444443    


Q ss_pred             CCCCcCeEeeccCCCCccccCC-CCCCCCcCceecccCCCCccccCCCc-ccccceeeeccCh
Q 039689          690 FPASLTELKISDMPSLERLSSI-GENLTSLKFLDLDNCPKLKYFSKQGL-PKSLLRLIIDECP  750 (763)
Q Consensus       690 ~~~~L~~L~l~~~~~l~~ip~~-~~~l~~L~~L~l~~c~~L~~l~~~~~-~~~L~~L~i~~C~  750 (763)
                      .+++|+.+++++ ++++.+|.. +..+++|++|+++++ +++++|.... .++|+.|+++|+|
T Consensus       146 ~l~~l~~l~l~~-N~l~~~~~~~~~~l~~L~~L~Ls~N-~L~~lp~~~~~~~~L~~L~L~~Np  206 (266)
T d1p9ag_         146 PTPKLEKLSLAN-NNLTELPAGLLNGLENLDTLLLQEN-SLYTIPKGFFGSHLLPFAFLHGNP  206 (266)
T ss_dssp             TCTTCCEEECTT-SCCSCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCCCSEEECCSCC
T ss_pred             ccccchhccccc-ccccccCccccccccccceeecccC-CCcccChhHCCCCCCCEEEecCCC
Confidence            456788888888 466776654 477888888888885 5788876322 3678888887654

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.46  E-value=8.7e-14  Score=131.35  Aligned_cols=93  Identities=24%  Similarity=0.350  Sum_probs=73.5

Q ss_pred             CCcccEEEecCCCCCccCcccCCCCcccEEecCCCCchhcchhhhhcccccEEeeccccccccccccccCcccccccccC
Q 039689          196 LPRLRVFSLRGYNIFELPKAIENLKHLRFLDLSTTKIEILRESINTLYNLHTLLLEDCRRLKKLCKDMGNLTKLHHLNNS  275 (763)
Q Consensus       196 l~~Lr~L~L~~~~i~~lp~~~~~l~~L~~L~L~~~~i~~lp~~~~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l~  275 (763)
                      +..|+.|++++|.++.++ .+..+++|++|+|++|.++.++ .++.+++|++|++++ +.+..+| .+..+++|+.|+++
T Consensus        45 L~~L~~L~l~~~~i~~l~-~l~~l~~L~~L~L~~n~i~~l~-~~~~l~~L~~L~l~~-n~i~~l~-~l~~l~~L~~L~l~  120 (210)
T d1h6ta2          45 LNSIDQIIANNSDIKSVQ-GIQYLPNVTKLFLNGNKLTDIK-PLANLKNLGWLFLDE-NKVKDLS-SLKDLKKLKSLSLE  120 (210)
T ss_dssp             HHTCCEEECTTSCCCCCT-TGGGCTTCCEEECCSSCCCCCG-GGTTCTTCCEEECCS-SCCCCGG-GGTTCTTCCEEECT
T ss_pred             hcCccEEECcCCCCCCch-hHhhCCCCCEEeCCCccccCcc-ccccCcccccccccc-ccccccc-cccccccccccccc
Confidence            457888999999988875 4788999999999999998886 478899999999998 4678887 48889999999998


Q ss_pred             CcccccccccCCCccCCC
Q 039689          276 NVGSLEEMLMLKSLVHLQ  293 (763)
Q Consensus       276 ~~~~l~~l~~l~~L~~L~  293 (763)
                      +|. +..++.+..+..++
T Consensus       121 ~~~-~~~~~~l~~l~~l~  137 (210)
T d1h6ta2         121 HNG-ISDINGLVHLPQLE  137 (210)
T ss_dssp             TSC-CCCCGGGGGCTTCC
T ss_pred             ccc-cccccccccccccc
Confidence            887 55554444444444

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.45  E-value=2e-13  Score=135.87  Aligned_cols=81  Identities=22%  Similarity=0.306  Sum_probs=49.7

Q ss_pred             cccEEEecCCCCCccC-cccCCCCcccEEecCCCCchhcc-hhhhhcccccEEeecccccccccc-ccccCccccccccc
Q 039689          198 RLRVFSLRGYNIFELP-KAIENLKHLRFLDLSTTKIEILR-ESINTLYNLHTLLLEDCRRLKKLC-KDMGNLTKLHHLNN  274 (763)
Q Consensus       198 ~Lr~L~L~~~~i~~lp-~~~~~l~~L~~L~L~~~~i~~lp-~~~~~L~~L~~L~L~~~~~l~~lp-~~i~~L~~L~~L~l  274 (763)
                      .+++|+|++|+++.+| .+|.++++|++|++++|.+..++ ..+..+..++.++...++.+..++ ..++++++|++|++
T Consensus        33 ~~~~L~Ls~N~i~~i~~~~f~~l~~L~~L~ls~n~l~~i~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~l~~L~~L~l  112 (284)
T d1ozna_          33 ASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHL  112 (284)
T ss_dssp             TCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEEEC
T ss_pred             CCCEEECcCCcCCCCCHHHhhccccccccccccccccccccccccccccccccccccccccccccchhhcccccCCEEec
Confidence            4566666666666665 35666666666666666666553 334556666666665555555553 33666666666666


Q ss_pred             CCcc
Q 039689          275 SNVG  278 (763)
Q Consensus       275 ~~~~  278 (763)
                      ++|.
T Consensus       113 ~~n~  116 (284)
T d1ozna_         113 DRCG  116 (284)
T ss_dssp             TTSC
T ss_pred             CCcc
Confidence            6665

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.44  E-value=1.9e-13  Score=130.96  Aligned_cols=189  Identities=20%  Similarity=0.259  Sum_probs=131.3

Q ss_pred             CCCCcccEEEecCCCCCccCcccCCCCcccEEecCCCCchhcchhhhhcccccEEeeccccccccccccccCcccccccc
Q 039689          194 LNLPRLRVFSLRGYNIFELPKAIENLKHLRFLDLSTTKIEILRESINTLYNLHTLLLEDCRRLKKLCKDMGNLTKLHHLN  273 (763)
Q Consensus       194 ~~l~~Lr~L~L~~~~i~~lp~~~~~l~~L~~L~L~~~~i~~lp~~~~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~  273 (763)
                      ..+.+|+.|++++|.++.++ .+..+++|++|++++|.++.+++ +..+++|+++++++| .+..++ .++.+++|+.++
T Consensus        38 ~~l~~L~~L~l~~~~i~~l~-~l~~l~~L~~L~ls~n~i~~~~~-l~~l~~l~~l~~~~n-~~~~i~-~l~~l~~L~~l~  113 (227)
T d1h6ua2          38 ADLDGITTLSAFGTGVTTIE-GVQYLNNLIGLELKDNQITDLAP-LKNLTKITELELSGN-PLKNVS-AIAGLQSIKTLD  113 (227)
T ss_dssp             HHHHTCCEEECTTSCCCCCT-TGGGCTTCCEEECCSSCCCCCGG-GTTCCSCCEEECCSC-CCSCCG-GGTTCTTCCEEE
T ss_pred             HHcCCcCEEECCCCCCCcch-hHhcCCCCcEeecCCceeecccc-ccccccccccccccc-cccccc-cccccccccccc
Confidence            44678999999999999884 68999999999999999988753 899999999999984 667775 488999999999


Q ss_pred             cCCcccccccccCCCccCCCceeeecCcccccCcccchhhhhcCcccccceEEeeccCCCCCCccHHHHhhcCCCCCCce
Q 039689          274 NSNVGSLEEMLMLKSLVHLQGTLEISRLENVKGVGDASEVQLNSKVNLKALYLQWGVRDAVEPKTETQVIDMLKPHQKLE  353 (763)
Q Consensus       274 l~~~~~l~~l~~l~~L~~L~~~L~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~l~~l~~L~  353 (763)
                      ++++. ...++.+.....++ .+.+......      ....+.++++|+.|++.++..                      
T Consensus       114 l~~~~-~~~~~~~~~~~~~~-~l~~~~~~~~------~~~~~~~~~~L~~L~l~~n~~----------------------  163 (227)
T d1h6ua2         114 LTSTQ-ITDVTPLAGLSNLQ-VLYLDLNQIT------NISPLAGLTNLQYLSIGNAQV----------------------  163 (227)
T ss_dssp             CTTSC-CCCCGGGTTCTTCC-EEECCSSCCC------CCGGGGGCTTCCEEECCSSCC----------------------
T ss_pred             ccccc-ccccchhccccchh-hhhchhhhhc------hhhhhcccccccccccccccc----------------------
Confidence            99887 55555555555555 4444332111      112345566677777654422                      


Q ss_pred             EEEeeeCCCCCCCccCCCCCCCceEEEEeccCCCCCCCCCCCCCCCCcceecccCCceEeCccccCCCcCCCCCCcceee
Q 039689          354 LTITGYGGTKFPIWLGDSLFSKLMLLKFDNCGTCTSLPSVGQLPFLKDPVISGMGRVKIVGSEFYGSSCSVSFPSLETLF  433 (763)
Q Consensus       354 L~~~~~~~~~~p~~~~~~~~~~L~~L~l~~~~~~~~l~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~f~~L~~L~  433 (763)
                              ...+. +..  +++|+.|++++| .+..+++++.+++|++|++++|. +..+.. +      ..+++|+.|+
T Consensus       164 --------~~~~~-l~~--l~~L~~L~Ls~n-~l~~l~~l~~l~~L~~L~Ls~N~-lt~i~~-l------~~l~~L~~L~  223 (227)
T d1h6ua2         164 --------SDLTP-LAN--LSKLTTLKADDN-KISDISPLASLPNLIEVHLKNNQ-ISDVSP-L------ANTSNLFIVT  223 (227)
T ss_dssp             --------CCCGG-GTT--CTTCCEEECCSS-CCCCCGGGGGCTTCCEEECTTSC-CCBCGG-G------TTCTTCCEEE
T ss_pred             --------ccchh-hcc--cccceecccCCC-ccCCChhhcCCCCCCEEECcCCc-CCCCcc-c------ccCCCCCEEE
Confidence                    11111 222  678888888887 45567777888888888888874 333321 1      3477888888


Q ss_pred             ccc
Q 039689          434 FVD  436 (763)
Q Consensus       434 l~~  436 (763)
                      +++
T Consensus       224 lsn  226 (227)
T d1h6ua2         224 LTN  226 (227)
T ss_dssp             EEE
T ss_pred             eeC
Confidence            764

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.43  E-value=1.2e-12  Score=130.23  Aligned_cols=79  Identities=20%  Similarity=0.206  Sum_probs=60.7

Q ss_pred             EEEecCCCCCccCcccCCCCcccEEecCCCCchhcch-hhhhcccccEEeecccccccccccc-ccCcccccccccCCcc
Q 039689          201 VFSLRGYNIFELPKAIENLKHLRFLDLSTTKIEILRE-SINTLYNLHTLLLEDCRRLKKLCKD-MGNLTKLHHLNNSNVG  278 (763)
Q Consensus       201 ~L~L~~~~i~~lp~~~~~l~~L~~L~L~~~~i~~lp~-~~~~L~~L~~L~L~~~~~l~~lp~~-i~~L~~L~~L~l~~~~  278 (763)
                      +++.++++++.+|..+.  ..+++|+|++|.|+.+|. +|.++++|++|++++ +.+..++.. +..+..++.+....+.
T Consensus        15 ~v~c~~~~L~~iP~~ip--~~~~~L~Ls~N~i~~i~~~~f~~l~~L~~L~ls~-n~l~~i~~~~~~~~~~~~~l~~~~~~   91 (284)
T d1ozna_          15 TTSCPQQGLQAVPVGIP--AASQRIFLHGNRISHVPAASFRACRNLTILWLHS-NVLARIDAAAFTGLALLEQLDLSDNA   91 (284)
T ss_dssp             EEECCSSCCSSCCTTCC--TTCSEEECTTSCCCEECTTTTTTCTTCCEEECCS-SCCCEECTTTTTTCTTCCEEECCSCT
T ss_pred             EEEcCCCCCCccCCCCC--CCCCEEECcCCcCCCCCHHHhhcccccccccccc-cccccccccccccccccccccccccc
Confidence            44667778888987664  678999999999999975 689999999999998 466666554 6777888888766554


Q ss_pred             cccc
Q 039689          279 SLEE  282 (763)
Q Consensus       279 ~l~~  282 (763)
                      .++.
T Consensus        92 ~~~~   95 (284)
T d1ozna_          92 QLRS   95 (284)
T ss_dssp             TCCC
T ss_pred             cccc
Confidence            3433

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.42  E-value=3.1e-13  Score=126.37  Aligned_cols=94  Identities=20%  Similarity=0.352  Sum_probs=73.3

Q ss_pred             CCCcccEEEecCCCCCccCcccCCCCcccEEecCCCCchhcchhhhhcccccEEeeccccccccccccccCccccccccc
Q 039689          195 NLPRLRVFSLRGYNIFELPKAIENLKHLRFLDLSTTKIEILRESINTLYNLHTLLLEDCRRLKKLCKDMGNLTKLHHLNN  274 (763)
Q Consensus       195 ~l~~Lr~L~L~~~~i~~lp~~~~~l~~L~~L~L~~~~i~~lp~~~~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l  274 (763)
                      .+++++.|++++|.+..++ .++.+++|++|++++|.++.+++ ++++++|++|++++| .+..+|. ++.+++|+.|++
T Consensus        38 ~l~~l~~L~l~~~~i~~l~-~l~~l~nL~~L~Ls~N~l~~~~~-l~~l~~L~~L~l~~n-~~~~~~~-l~~l~~L~~L~l  113 (199)
T d2omxa2          38 DLDQVTTLQADRLGIKSID-GVEYLNNLTQINFSNNQLTDITP-LKNLTKLVDILMNNN-QIADITP-LANLTNLTGLTL  113 (199)
T ss_dssp             HHTTCCEEECTTSCCCCCT-TGGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSS-CCCCCGG-GTTCTTCSEEEC
T ss_pred             HhcCCCEEECCCCCCCCcc-ccccCCCcCcCccccccccCccc-ccCCccccccccccc-ccccccc-cccccccccccc
Confidence            3578889999999988874 57889999999999999988865 889999999999984 6677764 888999999999


Q ss_pred             CCcccccccccCCCccCCC
Q 039689          275 SNVGSLEEMLMLKSLVHLQ  293 (763)
Q Consensus       275 ~~~~~l~~l~~l~~L~~L~  293 (763)
                      ++|. ...++.+..+++|+
T Consensus       114 ~~~~-~~~~~~~~~l~~L~  131 (199)
T d2omxa2         114 FNNQ-ITDIDPLKNLTNLN  131 (199)
T ss_dssp             CSSC-CCCCGGGTTCTTCS
T ss_pred             cccc-cccccccchhhhhH
Confidence            8887 44444344444443

>d2a5yb3 c.37.1.20 (B:109-385) CED-4, NB-ARC domain {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: CED-4, NB-ARC domain
species: Caenorhabditis elegans [TaxId: 6239]

Probab=99.39  E-value=2.5e-14  Score=140.78  Aligned_cols=88  Identities=11%  Similarity=0.037  Sum_probs=74.3

Q ss_pred             ChHHHHhhhhcCCCCCCCcchHHHHHHHHHHHcCCChHHHHHHHHHhcCCCChHHHHHHHhhhcccccCCccChHHHHHH
Q 039689            1 MHWECYQKMTVCVCSLNMHQSLKEVGQKIAMKCKGLPLAAKTLGGLLRGKDDPKDWENVLKTEVWDLADDKCDIIPALRV   80 (763)
Q Consensus         1 ~~~~lf~~~af~~~~~~~~~~~~~~~~~i~~~c~GlPlal~~~g~~L~~~~~~~~W~~~l~~~~~~~~~~~~~i~~~l~~   80 (763)
                      +||+||+++||+..   ..+..++++++||++|+|+||||+++|+.|+.+ +.+.|..+.+++...   ...++..++++
T Consensus       189 ea~~Lf~~~~~~~~---~~~~~~~~~~~iv~~c~GlPLAl~~ig~~l~~k-~~~~~~~~~~~L~~~---~~~~v~~il~~  261 (277)
T d2a5yb3         189 ECYDFLEAYGMPMP---VGEKEEDVLNKTIELSSGNPATLMMFFKSCEPK-TFEKMAQLNNKLESR---GLVGVECITPY  261 (277)
T ss_dssp             HHHHHHHHTSCCCC-----CHHHHHHHHHHHHHTTCHHHHHHHHTTCCSS-SHHHHHHHHHHHHHH---CSSTTCCCSSS
T ss_pred             HHHHHHHHHhCCcc---CchhhHHHHHHHHHHhCCCHHHHHHHHHHhccC-CHHHHHHHHHHHhcC---cHHHHHHHHHH
Confidence            58999999998644   345678999999999999999999999999988 688999888876532   23578889999


Q ss_pred             HHhcCCHhHHHHhhh
Q 039689           81 SYHFLPPQLKQCFAY   95 (763)
Q Consensus        81 Sy~~L~~~~k~~fl~   95 (763)
                      ||++||+++|.||-+
T Consensus       262 sY~~L~~~lk~c~~~  276 (277)
T d2a5yb3         262 SYKSLAMALQRCVEV  276 (277)
T ss_dssp             SSSSHHHHHHHHHHT
T ss_pred             HHhcccHHHHHHHHh
Confidence            999999999999965

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.35  E-value=6e-13  Score=112.98  Aligned_cols=81  Identities=27%  Similarity=0.346  Sum_probs=72.3

Q ss_pred             cEEEecCCCCCccCcccCCCCcccEEecCCCCchhcchhhhhcccccEEeeccccccccccccccCcccccccccCCccc
Q 039689          200 RVFSLRGYNIFELPKAIENLKHLRFLDLSTTKIEILRESINTLYNLHTLLLEDCRRLKKLCKDMGNLTKLHHLNNSNVGS  279 (763)
Q Consensus       200 r~L~L~~~~i~~lp~~~~~l~~L~~L~L~~~~i~~lp~~~~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l~~~~~  279 (763)
                      |+|+|++|+++.++. ++.+++|++|++++|.++.+|++++.+++|++|++++ +.+..+|. ++++++|++|++++|. 
T Consensus         1 R~L~Ls~n~l~~l~~-l~~l~~L~~L~ls~N~l~~lp~~~~~l~~L~~L~l~~-N~i~~l~~-~~~l~~L~~L~l~~N~-   76 (124)
T d1dcea3           1 RVLHLAHKDLTVLCH-LEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASD-NALENVDG-VANLPRLQELLLCNNR-   76 (124)
T ss_dssp             SEEECTTSCCSSCCC-GGGGTTCCEEECCSSCCCCCCGGGGGCTTCCEEECCS-SCCCCCGG-GTTCSSCCEEECCSSC-
T ss_pred             CEEEcCCCCCCCCcc-cccCCCCCEEECCCCccCcchhhhhhhhccccccccc-ccccccCc-cccccccCeEECCCCc-
Confidence            789999999998864 8999999999999999999999999999999999999 68888874 9999999999999997 


Q ss_pred             ccccc
Q 039689          280 LEEML  284 (763)
Q Consensus       280 l~~l~  284 (763)
                      +..++
T Consensus        77 i~~~~   81 (124)
T d1dcea3          77 LQQSA   81 (124)
T ss_dssp             CCSSS
T ss_pred             cCCCC
Confidence            55444

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.32  E-value=2.7e-12  Score=124.35  Aligned_cols=96  Identities=19%  Similarity=0.253  Sum_probs=74.5

Q ss_pred             CcccEEEecCCCCCccCc-ccCCCCcccEEecCCCCchhc--chhhhhcccccEEeecccccccccccc-ccCccccccc
Q 039689          197 PRLRVFSLRGYNIFELPK-AIENLKHLRFLDLSTTKIEIL--RESINTLYNLHTLLLEDCRRLKKLCKD-MGNLTKLHHL  272 (763)
Q Consensus       197 ~~Lr~L~L~~~~i~~lp~-~~~~l~~L~~L~L~~~~i~~l--p~~~~~L~~L~~L~L~~~~~l~~lp~~-i~~L~~L~~L  272 (763)
                      +++++|++++|.++.+|. .|.++++|++|++++|.+...  +..|..++++++|++.+++.+..++.. +.++++|++|
T Consensus        29 ~~l~~L~Ls~n~i~~l~~~~f~~l~~L~~L~ls~n~~~~~i~~~~f~~l~~l~~l~~~~~n~l~~~~~~~~~~l~~L~~l  108 (242)
T d1xwdc1          29 RNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYL  108 (242)
T ss_dssp             SCCSEEEEESCCCCEECTTTTTTCTTCCEEEEESCTTCCEECSSSEESCTTCCEEEEECCTTCCEECTTSEECCTTCCEE
T ss_pred             CCCCEEECcCCcCCccChhHhhccchhhhhhhccccccceeecccccccccccccccccccccccccccccccccccccc
Confidence            478899999999988864 688899999999999987753  346788899999988776667666544 7889999999


Q ss_pred             ccCCcccccccccCCCccCCC
Q 039689          273 NNSNVGSLEEMLMLKSLVHLQ  293 (763)
Q Consensus       273 ~l~~~~~l~~l~~l~~L~~L~  293 (763)
                      +++++. +...+....+..++
T Consensus       109 ~l~~~~-l~~~~~~~~~~~l~  128 (242)
T d1xwdc1         109 LISNTG-IKHLPDVHKIHSLQ  128 (242)
T ss_dssp             EEESCC-CCSCCCCTTTCBSS
T ss_pred             ccchhh-hccccccccccccc
Confidence            999887 66666555555444

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.29  E-value=2.1e-11  Score=116.37  Aligned_cols=176  Identities=15%  Similarity=0.194  Sum_probs=122.4

Q ss_pred             cceeeeccCCCcccccchhhhcCCCCcceEEEecCccccccCCCCCCCCccEEEEccCCCCCCCchhhhcCCCCCcceEe
Q 039689          558 LRTVKIEDCNALESLPEAWMHNSNSSLESLKIRSCNSLVSFPDFALPSQLRTVTIKGCDALESLPEAWMQNSSTSLESLA  637 (763)
Q Consensus       558 L~~L~l~~~~~l~~l~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~  637 (763)
                      |+.|++.+ +.+++++ ++  ..+++|++|++++|. +..++.+..+++|+++++++| .++.++. +  ..+++|+.++
T Consensus        43 L~~L~l~~-~~i~~l~-~l--~~l~~L~~L~ls~n~-i~~~~~l~~l~~l~~l~~~~n-~~~~i~~-l--~~l~~L~~l~  113 (227)
T d1h6ua2          43 ITTLSAFG-TGVTTIE-GV--QYLNNLIGLELKDNQ-ITDLAPLKNLTKITELELSGN-PLKNVSA-I--AGLQSIKTLD  113 (227)
T ss_dssp             CCEEECTT-SCCCCCT-TG--GGCTTCCEEECCSSC-CCCCGGGTTCCSCCEEECCSC-CCSCCGG-G--TTCTTCCEEE
T ss_pred             cCEEECCC-CCCCcch-hH--hcCCCCcEeecCCce-eeccccccccccccccccccc-ccccccc-c--cccccccccc
Confidence            45555555 3466664 32  237888888887765 455655677788888888887 4455553 3  5678888888


Q ss_pred             eccCCCccccccccCCCCCcEEEEecCCCC------CCCccceEEecCCCCCccccCC--CCCCcCeEeeccCCCCcccc
Q 039689          638 IDSCDSLTYIARIQLPPSLKRLIIFRCDNL------RFNSLRKLKISGGCPDLVSSPR--FPASLTELKISDMPSLERLS  709 (763)
Q Consensus       638 l~~c~~l~~l~~~~~~~~L~~L~l~~c~~l------~~~~L~~L~l~~~~~~l~~~~~--~~~~L~~L~l~~~~~l~~ip  709 (763)
                      +++| ....++.....+.++.+.+.++...      ..++|+.|++++  +.+...+.  .+++|++|++++| .++.++
T Consensus       114 l~~~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~--n~~~~~~~l~~l~~L~~L~Ls~n-~l~~l~  189 (227)
T d1h6ua2         114 LTST-QITDVTPLAGLSNLQVLYLDLNQITNISPLAGLTNLQYLSIGN--AQVSDLTPLANLSKLTTLKADDN-KISDIS  189 (227)
T ss_dssp             CTTS-CCCCCGGGTTCTTCCEEECCSSCCCCCGGGGGCTTCCEEECCS--SCCCCCGGGTTCTTCCEEECCSS-CCCCCG
T ss_pred             cccc-cccccchhccccchhhhhchhhhhchhhhhccccccccccccc--cccccchhhcccccceecccCCC-ccCCCh
Confidence            8877 3344443344567777777665433      456688888875  33333332  5689999999995 788887


Q ss_pred             CCCCCCCCcCceecccCCCCccccCCCcccccceeeecc
Q 039689          710 SIGENLTSLKFLDLDNCPKLKYFSKQGLPKSLLRLIIDE  748 (763)
Q Consensus       710 ~~~~~l~~L~~L~l~~c~~L~~l~~~~~~~~L~~L~i~~  748 (763)
                       .+..+++|++|++++| +++.++.-...++|+.|++++
T Consensus       190 -~l~~l~~L~~L~Ls~N-~lt~i~~l~~l~~L~~L~lsn  226 (227)
T d1h6ua2         190 -PLASLPNLIEVHLKNN-QISDVSPLANTSNLFIVTLTN  226 (227)
T ss_dssp             -GGGGCTTCCEEECTTS-CCCBCGGGTTCTTCCEEEEEE
T ss_pred             -hhcCCCCCCEEECcCC-cCCCCcccccCCCCCEEEeeC
Confidence             4788999999999998 699998655557999999875

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.26  E-value=2.2e-11  Score=114.46  Aligned_cols=160  Identities=15%  Similarity=0.148  Sum_probs=110.8

Q ss_pred             cceeeeccCCCcccccchhhhcCCCCcceEEEecCccccccCCCCCCCCccEEEEccCCCCCCCchhhhcCCCCCcceEe
Q 039689          558 LRTVKIEDCNALESLPEAWMHNSNSSLESLKIRSCNSLVSFPDFALPSQLRTVTIKGCDALESLPEAWMQNSSTSLESLA  637 (763)
Q Consensus       558 L~~L~l~~~~~l~~l~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~  637 (763)
                      |+.|++++| .++.++. +  ..+++|++|++++|. ++.++.++.+++|++|++++| .++.++. +  ..+++|+.|+
T Consensus        48 L~~L~l~~~-~i~~l~~-l--~~l~~L~~L~L~~n~-i~~l~~~~~l~~L~~L~l~~n-~i~~l~~-l--~~l~~L~~L~  118 (210)
T d1h6ta2          48 IDQIIANNS-DIKSVQG-I--QYLPNVTKLFLNGNK-LTDIKPLANLKNLGWLFLDEN-KVKDLSS-L--KDLKKLKSLS  118 (210)
T ss_dssp             CCEEECTTS-CCCCCTT-G--GGCTTCCEEECCSSC-CCCCGGGTTCTTCCEEECCSS-CCCCGGG-G--TTCTTCCEEE
T ss_pred             ccEEECcCC-CCCCchh-H--hhCCCCCEEeCCCcc-ccCccccccCccccccccccc-ccccccc-c--cccccccccc
Confidence            788888874 4555543 2  237888888887764 566777777888888888887 4666663 3  6788888888


Q ss_pred             eccCCCccccccccCCCCCcEEEEecCCCCCCCccceEEecCCCCCccccCC--CCCCcCeEeeccCCCCccccCCCCCC
Q 039689          638 IDSCDSLTYIARIQLPPSLKRLIIFRCDNLRFNSLRKLKISGGCPDLVSSPR--FPASLTELKISDMPSLERLSSIGENL  715 (763)
Q Consensus       638 l~~c~~l~~l~~~~~~~~L~~L~l~~c~~l~~~~L~~L~l~~~~~~l~~~~~--~~~~L~~L~l~~~~~l~~ip~~~~~l  715 (763)
                      +++| .+..++.....+.++.+++.++                  .+...+.  .+++|+++++++| .++.++ .+.++
T Consensus       119 l~~~-~~~~~~~l~~l~~l~~l~~~~n------------------~l~~~~~~~~l~~L~~l~l~~n-~l~~i~-~l~~l  177 (210)
T d1h6ta2         119 LEHN-GISDINGLVHLPQLESLYLGNN------------------KITDITVLSRLTKLDTLSLEDN-QISDIV-PLAGL  177 (210)
T ss_dssp             CTTS-CCCCCGGGGGCTTCCEEECCSS------------------CCCCCGGGGGCTTCSEEECCSS-CCCCCG-GGTTC
T ss_pred             cccc-cccccccccccccccccccccc------------------cccccccccccccccccccccc-cccccc-cccCC
Confidence            8887 4444443333344444444332                  2222221  4578999999994 777776 47889


Q ss_pred             CCcCceecccCCCCccccCCCcccccceeeecc
Q 039689          716 TSLKFLDLDNCPKLKYFSKQGLPKSLLRLIIDE  748 (763)
Q Consensus       716 ~~L~~L~l~~c~~L~~l~~~~~~~~L~~L~i~~  748 (763)
                      ++|++|++++| +++.++.-.-.++|+.|++++
T Consensus       178 ~~L~~L~Ls~N-~i~~l~~l~~l~~L~~L~Ls~  209 (210)
T d1h6ta2         178 TKLQNLYLSKN-HISDLRALAGLKNLDVLELFS  209 (210)
T ss_dssp             TTCCEEECCSS-CCCBCGGGTTCTTCSEEEEEE
T ss_pred             CCCCEEECCCC-CCCCChhhcCCCCCCEEEccC
Confidence            99999999997 688887644457899999875

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.26  E-value=2.1e-11  Score=113.59  Aligned_cols=156  Identities=18%  Similarity=0.227  Sum_probs=102.2

Q ss_pred             cceeeeccCCCcccccchhhhcCCCCcceEEEecCccccccCCCCCCCCccEEEEccCCCCCCCchhhhcCCCCCcceEe
Q 039689          558 LRTVKIEDCNALESLPEAWMHNSNSSLESLKIRSCNSLVSFPDFALPSQLRTVTIKGCDALESLPEAWMQNSSTSLESLA  637 (763)
Q Consensus       558 L~~L~l~~~~~l~~l~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~  637 (763)
                      +++|++++| .++.++. +  ..+++|++|++++| .++.++++..+++|++|++++|. ...++. +  ..+++|+.|+
T Consensus        42 l~~L~l~~~-~i~~l~~-l--~~l~nL~~L~Ls~N-~l~~~~~l~~l~~L~~L~l~~n~-~~~~~~-l--~~l~~L~~L~  112 (199)
T d2omxa2          42 VTTLQADRL-GIKSIDG-V--EYLNNLTQINFSNN-QLTDITPLKNLTKLVDILMNNNQ-IADITP-L--ANLTNLTGLT  112 (199)
T ss_dssp             CCEEECTTS-CCCCCTT-G--GGCTTCCEEECCSS-CCCCCGGGTTCTTCCEEECCSSC-CCCCGG-G--TTCTTCSEEE
T ss_pred             CCEEECCCC-CCCCccc-c--ccCCCcCcCccccc-cccCcccccCCcccccccccccc-cccccc-c--cccccccccc
Confidence            777888774 4555532 1  23788888888775 45666667777888888888874 445553 3  6778888888


Q ss_pred             eccCCCccccccccCCCCCcEEEEecCCCCCCCccceEEecCCCCCccccCC--CCCCcCeEeeccCCCCccccCCCCCC
Q 039689          638 IDSCDSLTYIARIQLPPSLKRLIIFRCDNLRFNSLRKLKISGGCPDLVSSPR--FPASLTELKISDMPSLERLSSIGENL  715 (763)
Q Consensus       638 l~~c~~l~~l~~~~~~~~L~~L~l~~c~~l~~~~L~~L~l~~~~~~l~~~~~--~~~~L~~L~l~~~~~l~~ip~~~~~l  715 (763)
                      +++|.. ..++...                .+++|+.+++++  +.+..++.  .+++|++|++.+ +.++.++ .+.++
T Consensus       113 l~~~~~-~~~~~~~----------------~l~~L~~L~l~~--n~l~~~~~l~~~~~L~~L~l~~-n~l~~l~-~l~~l  171 (199)
T d2omxa2         113 LFNNQI-TDIDPLK----------------NLTNLNRLELSS--NTISDISALSGLTSLQQLNFSS-NQVTDLK-PLANL  171 (199)
T ss_dssp             CCSSCC-CCCGGGT----------------TCTTCSEEECCS--SCCCCCGGGTTCTTCSEEECCS-SCCCCCG-GGTTC
T ss_pred             cccccc-ccccccc----------------hhhhhHHhhhhh--hhhccccccccccccccccccc-ccccCCc-cccCC
Confidence            887733 3332222                234555555554  23333332  567899999998 4778877 47889


Q ss_pred             CCcCceecccCCCCccccCCCccccccee
Q 039689          716 TSLKFLDLDNCPKLKYFSKQGLPKSLLRL  744 (763)
Q Consensus       716 ~~L~~L~l~~c~~L~~l~~~~~~~~L~~L  744 (763)
                      ++|++|++++| +++.++.-.-.++|++|
T Consensus       172 ~~L~~L~ls~N-~i~~i~~l~~L~~L~~L  199 (199)
T d2omxa2         172 TTLERLDISSN-KVSDISVLAKLTNLESL  199 (199)
T ss_dssp             TTCCEEECCSS-CCCCCGGGGGCTTCSEE
T ss_pred             CCCCEEECCCC-CCCCCccccCCCCCCcC
Confidence            99999999997 58888653334566654

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.25  E-value=1.8e-12  Score=115.83  Aligned_cols=105  Identities=30%  Similarity=0.344  Sum_probs=86.6

Q ss_pred             ccCCCCcccEEEecCCCCCccCcccCCCCcccEEecCCCCchhcchhhhhcccccEEeecccccccccccc-ccCccccc
Q 039689          192 RLLNLPRLRVFSLRGYNIFELPKAIENLKHLRFLDLSTTKIEILRESINTLYNLHTLLLEDCRRLKKLCKD-MGNLTKLH  270 (763)
Q Consensus       192 ~~~~l~~Lr~L~L~~~~i~~lp~~~~~l~~L~~L~L~~~~i~~lp~~~~~L~~L~~L~L~~~~~l~~lp~~-i~~L~~L~  270 (763)
                      .+.+...+|.|+|++|+|+.++..+..+++|++|+|++|.|++++ .+..+++|++|++++ +.+..+|+. +..+++|+
T Consensus        13 ~~~n~~~lr~L~L~~n~I~~i~~~~~~l~~L~~L~Ls~N~i~~l~-~~~~l~~L~~L~ls~-N~i~~l~~~~~~~l~~L~   90 (162)
T d1a9na_          13 QYTNAVRDRELDLRGYKIPVIENLGATLDQFDAIDFSDNEIRKLD-GFPLLRRLKTLLVNN-NRICRIGEGLDQALPDLT   90 (162)
T ss_dssp             EEECTTSCEEEECTTSCCCSCCCGGGGTTCCSEEECCSSCCCEEC-CCCCCSSCCEEECCS-SCCCEECSCHHHHCTTCC
T ss_pred             hccCcCcCcEEECCCCCCCccCccccccccCCEEECCCCCCCccC-CcccCcchhhhhccc-ccccCCCccccccccccc
Confidence            356778899999999999999887788999999999999999985 589999999999999 578888876 46799999


Q ss_pred             ccccCCccccccccc---CCCccCCCceeeecC
Q 039689          271 HLNNSNVGSLEEMLM---LKSLVHLQGTLEISR  300 (763)
Q Consensus       271 ~L~l~~~~~l~~l~~---l~~L~~L~~~L~~~~  300 (763)
                      +|++++|. +..++.   +..+++|+ .+.+.+
T Consensus        91 ~L~L~~N~-i~~~~~l~~l~~l~~L~-~L~l~~  121 (162)
T d1a9na_          91 ELILTNNS-LVELGDLDPLASLKSLT-YLCILR  121 (162)
T ss_dssp             EEECCSCC-CCCGGGGGGGGGCTTCC-EEECCS
T ss_pred             cceecccc-ccccccccccccccccc-hhhcCC
Confidence            99999997 655543   45555665 555554

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.25  E-value=5.3e-11  Score=114.98  Aligned_cols=176  Identities=18%  Similarity=0.229  Sum_probs=91.8

Q ss_pred             CCcccccchhhhcCCCCcceEEEecCccccccCC--CCCCCCccEEEEccCCCCCCCchhhhcCCCCCcceEeeccCCCc
Q 039689          567 NALESLPEAWMHNSNSSLESLKIRSCNSLVSFPD--FALPSQLRTVTIKGCDALESLPEAWMQNSSTSLESLAIDSCDSL  644 (763)
Q Consensus       567 ~~l~~l~~~~~~~~l~~L~~L~l~~c~~l~~~~~--~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~c~~l  644 (763)
                      +.++.+|...+. .+++|++|++++|.....++.  +..+++++++.+..+..+..++...+ ..+++|+.++++++ .+
T Consensus        39 n~i~~l~~~~f~-~l~~L~~L~ls~n~~~~~i~~~~f~~l~~l~~l~~~~~n~l~~~~~~~~-~~l~~L~~l~l~~~-~l  115 (242)
T d1xwdc1          39 TKLRVIQKGAFS-GFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAF-QNLPNLQYLLISNT-GI  115 (242)
T ss_dssp             CCCCEECTTTTT-TCTTCCEEEEESCTTCCEECSSSEESCTTCCEEEEECCTTCCEECTTSE-ECCTTCCEEEEESC-CC
T ss_pred             CcCCccChhHhh-ccchhhhhhhccccccceeeccccccccccccccccccccccccccccc-cccccccccccchh-hh
Confidence            345555443222 255555555555544433332  33445555555554444444433322 44555555555554 34


Q ss_pred             cccccccCCCCCcEEEEecCCC--C---------CC-CccceEEecCCCCCccccCC---CCCCcCeEeeccCCCCcccc
Q 039689          645 TYIARIQLPPSLKRLIIFRCDN--L---------RF-NSLRKLKISGGCPDLVSSPR---FPASLTELKISDMPSLERLS  709 (763)
Q Consensus       645 ~~l~~~~~~~~L~~L~l~~c~~--l---------~~-~~L~~L~l~~~~~~l~~~~~---~~~~L~~L~l~~~~~l~~ip  709 (763)
                      +..+......+++.+......+  +         .+ ..++.+++++  +.+..++.   ...+++++....++.++.+|
T Consensus       116 ~~~~~~~~~~~l~~l~~~~~~n~~l~~i~~~~~~~~~~~l~~L~l~~--n~l~~i~~~~~~~~~l~~~~~l~~n~l~~l~  193 (242)
T d1xwdc1         116 KHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNK--NGIQEIHNCAFNGTQLDELNLSDNNNLEELP  193 (242)
T ss_dssp             CSCCCCTTTCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCS--SCCCEECTTTTTTCCEEEEECTTCTTCCCCC
T ss_pred             cccccccccccccccccccccccccccccccccccccccceeeeccc--ccccccccccccchhhhcccccccccccccc
Confidence            4443333333343333222211  1         11 2455556553  55555554   23456666666668899998


Q ss_pred             CCC-CCCCCcCceecccCCCCccccCCCcccccceeeeccC
Q 039689          710 SIG-ENLTSLKFLDLDNCPKLKYFSKQGLPKSLLRLIIDEC  749 (763)
Q Consensus       710 ~~~-~~l~~L~~L~l~~c~~L~~l~~~~~~~~L~~L~i~~C  749 (763)
                      ... .++++|++|+++++ +++.+|...+ .+|..|+.-++
T Consensus       194 ~~~f~~l~~L~~L~Ls~N-~l~~l~~~~~-~~l~~L~~l~~  232 (242)
T d1xwdc1         194 NDVFHGASGPVILDISRT-RIHSLPSYGL-ENLKKLRARST  232 (242)
T ss_dssp             TTTTTTSCCCSEEECTTS-CCCCCCSSSC-TTCCEEESSSE
T ss_pred             HHHhcCCCCCCEEECCCC-cCCccCHHHH-cCCcccccCcC
Confidence            754 78899999999886 5888877443 44555443333

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.18  E-value=1.3e-11  Score=104.44  Aligned_cols=90  Identities=24%  Similarity=0.282  Sum_probs=80.1

Q ss_pred             ccCCCCcccEEEecCCCCCccCcccCCCCcccEEecCCCCchhcchhhhhcccccEEeeccccccccccc--cccCcccc
Q 039689          192 RLLNLPRLRVFSLRGYNIFELPKAIENLKHLRFLDLSTTKIEILRESINTLYNLHTLLLEDCRRLKKLCK--DMGNLTKL  269 (763)
Q Consensus       192 ~~~~l~~Lr~L~L~~~~i~~lp~~~~~l~~L~~L~L~~~~i~~lp~~~~~L~~L~~L~L~~~~~l~~lp~--~i~~L~~L  269 (763)
                      .+..+++|++|++++|.++.+|+.|+.+++|++|++++|.|+.+| +++.+++|++|++++ +.+..+|.  .++.+++|
T Consensus        15 ~l~~l~~L~~L~ls~N~l~~lp~~~~~l~~L~~L~l~~N~i~~l~-~~~~l~~L~~L~l~~-N~i~~~~~~~~l~~~~~L   92 (124)
T d1dcea3          15 HLEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALENVD-GVANLPRLQELLLCN-NRLQQSAAIQPLVSCPRL   92 (124)
T ss_dssp             CGGGGTTCCEEECCSSCCCCCCGGGGGCTTCCEEECCSSCCCCCG-GGTTCSSCCEEECCS-SCCCSSSTTGGGGGCTTC
T ss_pred             ccccCCCCCEEECCCCccCcchhhhhhhhcccccccccccccccC-ccccccccCeEECCC-CccCCCCCchhhcCCCCC
Confidence            467889999999999999999999999999999999999999997 599999999999999 57887764  58899999


Q ss_pred             cccccCCcccccccc
Q 039689          270 HHLNNSNVGSLEEML  284 (763)
Q Consensus       270 ~~L~l~~~~~l~~l~  284 (763)
                      ++|++++|. +...+
T Consensus        93 ~~L~l~~N~-i~~~~  106 (124)
T d1dcea3          93 VLLNLQGNS-LCQEE  106 (124)
T ss_dssp             CEEECTTSG-GGGSS
T ss_pred             CEEECCCCc-CCcCc
Confidence            999999997 54443

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.15  E-value=8.8e-12  Score=123.31  Aligned_cols=167  Identities=16%  Similarity=0.167  Sum_probs=100.6

Q ss_pred             cceeeeccCCCcccccchhhhcCCCCcceEEEecCccccc-cCCCCCCCCccEEEEccCCCCCCCchhhhcCCCCCcceE
Q 039689          558 LRTVKIEDCNALESLPEAWMHNSNSSLESLKIRSCNSLVS-FPDFALPSQLRTVTIKGCDALESLPEAWMQNSSTSLESL  636 (763)
Q Consensus       558 L~~L~l~~~~~l~~l~~~~~~~~l~~L~~L~l~~c~~l~~-~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L  636 (763)
                      |++|++++|......... ....+++|++|++++|..-.. +..+...++|++|++++|..++...-..+...+++|+.|
T Consensus        48 L~~LdLs~~~i~~~~l~~-l~~~c~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~Ls~c~~itd~~l~~l~~~~~~L~~L  126 (284)
T d2astb2          48 VQHMDLSNSVIEVSTLHG-ILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDEL  126 (284)
T ss_dssp             CCEEECTTCEECHHHHHH-HHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEE
T ss_pred             CCEEECCCCccCHHHHHH-HHHhCCCcccccccccCCCcHHHHHHhcCCCCcCccccccccccccccchhhHHHHhcccc
Confidence            889999987533222222 233589999999998863222 222456689999999998777643322222578999999


Q ss_pred             eeccCCCcccccc----ccCCCCCcEEEEecCCC-C----------CCCccceEEecCCCCCccccC--C--CCCCcCeE
Q 039689          637 AIDSCDSLTYIAR----IQLPPSLKRLIIFRCDN-L----------RFNSLRKLKISGGCPDLVSSP--R--FPASLTEL  697 (763)
Q Consensus       637 ~l~~c~~l~~l~~----~~~~~~L~~L~l~~c~~-l----------~~~~L~~L~l~~~~~~l~~~~--~--~~~~L~~L  697 (763)
                      ++++|..++.-..    ...++.|+.|.+.+|.. +          ..++|++|++++ |..+.+-.  .  .+++|++|
T Consensus       127 ~ls~c~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~i~~~~l~~l~~~~~~L~~L~L~~-~~~itd~~~~~l~~~~~L~~L  205 (284)
T d2astb2         127 NLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSD-SVMLKNDCFQEFFQLNYLQHL  205 (284)
T ss_dssp             ECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTT-CTTCCGGGGGGGGGCTTCCEE
T ss_pred             ccccccccccccchhhhcccccccchhhhccccccccccccccccccccccccccccc-ccCCCchhhhhhcccCcCCEE
Confidence            9999977754211    12346788888877642 2          345666666665 55443211  1  34566666


Q ss_pred             eeccCCCCccc-cCCCCCCCCcCceecccC
Q 039689          698 KISDMPSLERL-SSIGENLTSLKFLDLDNC  726 (763)
Q Consensus       698 ~l~~~~~l~~i-p~~~~~l~~L~~L~l~~c  726 (763)
                      ++++|+.++.- ...+.++++|++|++++|
T Consensus       206 ~L~~C~~i~~~~l~~L~~~~~L~~L~l~~~  235 (284)
T d2astb2         206 SLSRCYDIIPETLLELGEIPTLKTLQVFGI  235 (284)
T ss_dssp             ECTTCTTCCGGGGGGGGGCTTCCEEECTTS
T ss_pred             ECCCCCCCChHHHHHHhcCCCCCEEeeeCC
Confidence            66666555432 122345566666666665

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.14  E-value=5.9e-12  Score=124.61  Aligned_cols=142  Identities=18%  Similarity=0.287  Sum_probs=62.6

Q ss_pred             cceeeeccCCCcccccchhhhcCCCCcceEEEecCccccccC--C-CCCCCCccEEEEccCCCCCCCch-hhhcCCCCCc
Q 039689          558 LRTVKIEDCNALESLPEAWMHNSNSSLESLKIRSCNSLVSFP--D-FALPSQLRTVTIKGCDALESLPE-AWMQNSSTSL  633 (763)
Q Consensus       558 L~~L~l~~~~~l~~l~~~~~~~~l~~L~~L~l~~c~~l~~~~--~-~~~~~~L~~L~l~~~~~l~~~~~-~~~~~~l~~L  633 (763)
                      |++|.+++|+.-...+..+.  .+++|++|++++|..++...  . ...+++|++|++++|..++.... .......++|
T Consensus        73 L~~L~L~~~~l~~~~~~~l~--~~~~L~~L~Ls~c~~itd~~l~~l~~~~~~L~~L~ls~c~~~~~~~~~~~~~~~~~~L  150 (284)
T d2astb2          73 LQNLSLEGLRLSDPIVNTLA--KNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETI  150 (284)
T ss_dssp             CSEEECTTCBCCHHHHHHHT--TCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTC
T ss_pred             cccccccccCCCcHHHHHHh--cCCCCcCccccccccccccccchhhHHHHhccccccccccccccccchhhhccccccc
Confidence            55555655532222222211  24556666666555544211  1 12345566666666544432111 1111234556


Q ss_pred             ceEeeccCC-Cccccccc---cCCCCCcEEEEecCCCC---------CCCccceEEecCCCCCccccCC----CCCCcCe
Q 039689          634 ESLAIDSCD-SLTYIARI---QLPPSLKRLIIFRCDNL---------RFNSLRKLKISGGCPDLVSSPR----FPASLTE  696 (763)
Q Consensus       634 ~~L~l~~c~-~l~~l~~~---~~~~~L~~L~l~~c~~l---------~~~~L~~L~l~~~~~~l~~~~~----~~~~L~~  696 (763)
                      +.|++++|. .++.-...   ...++|++|++++|..+         .+++|++|++++ |..+.+-..    ..++|++
T Consensus       151 ~~L~l~~~~~~i~~~~l~~l~~~~~~L~~L~L~~~~~itd~~~~~l~~~~~L~~L~L~~-C~~i~~~~l~~L~~~~~L~~  229 (284)
T d2astb2         151 TQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSR-CYDIIPETLLELGEIPTLKT  229 (284)
T ss_dssp             CEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTT-CTTCCGGGGGGGGGCTTCCE
T ss_pred             chhhhcccccccccccccccccccccccccccccccCCCchhhhhhcccCcCCEEECCC-CCCCChHHHHHHhcCCCCCE
Confidence            666665542 22211110   11345666666655544         345566666655 554432110    2345666


Q ss_pred             EeeccC
Q 039689          697 LKISDM  702 (763)
Q Consensus       697 L~l~~~  702 (763)
                      |++++|
T Consensus       230 L~l~~~  235 (284)
T d2astb2         230 LQVFGI  235 (284)
T ss_dssp             EECTTS
T ss_pred             EeeeCC
Confidence            665554

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.03  E-value=3e-10  Score=104.90  Aligned_cols=86  Identities=15%  Similarity=0.210  Sum_probs=61.8

Q ss_pred             CcccEEEecCCCCCc-c-CcccCCCCcccEEecCCCCchhc-chhhhhcccccEEeecccccccccccc-ccCccccccc
Q 039689          197 PRLRVFSLRGYNIFE-L-PKAIENLKHLRFLDLSTTKIEIL-RESINTLYNLHTLLLEDCRRLKKLCKD-MGNLTKLHHL  272 (763)
Q Consensus       197 ~~Lr~L~L~~~~i~~-l-p~~~~~l~~L~~L~L~~~~i~~l-p~~~~~L~~L~~L~L~~~~~l~~lp~~-i~~L~~L~~L  272 (763)
                      +++++|+|++|.|+. + +..|..+++|++|+|++|.+..+ +..+..+++|++|+|++ +.+..+|+. |+++++|++|
T Consensus        29 ~~l~~L~Ls~N~i~~~~~~~~f~~l~~L~~L~L~~N~i~~~~~~~~~~~~~L~~L~Ls~-N~l~~l~~~~F~~l~~L~~L  107 (192)
T d1w8aa_          29 LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGE-NKIKEISNKMFLGLHQLKTL  107 (192)
T ss_dssp             TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCS-CCCCEECSSSSTTCTTCCEE
T ss_pred             CCCCEEEeCCCCCcccccccccCCCceEeeeeccccccccccccccccccccceeeecc-ccccccCHHHHhCCCccccc
Confidence            467778888888764 3 35667788888888888877765 45667778888888887 466666554 7778888888


Q ss_pred             ccCCcccccccc
Q 039689          273 NNSNVGSLEEML  284 (763)
Q Consensus       273 ~l~~~~~l~~l~  284 (763)
                      +|++|. ++.++
T Consensus       108 ~L~~N~-l~~i~  118 (192)
T d1w8aa_         108 NLYDNQ-ISCVM  118 (192)
T ss_dssp             ECCSSC-CCEEC
T ss_pred             ccCCcc-ccccC
Confidence            888776 55544

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=98.98  E-value=3.5e-10  Score=104.41  Aligned_cols=126  Identities=16%  Similarity=0.126  Sum_probs=100.8

Q ss_pred             ccEEEecCCCCCccCcccCCCCcccEEecCCCCchh-c-chhhhhcccccEEeeccccccccccccccCcccccccccCC
Q 039689          199 LRVFSLRGYNIFELPKAIENLKHLRFLDLSTTKIEI-L-RESINTLYNLHTLLLEDCRRLKKLCKDMGNLTKLHHLNNSN  276 (763)
Q Consensus       199 Lr~L~L~~~~i~~lp~~~~~l~~L~~L~L~~~~i~~-l-p~~~~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l~~  276 (763)
                      .++++.++++++.+|..+.  .++++|+|++|.|+. + +..|+++++|++|+|++|......+..+..+++|++|++++
T Consensus        10 ~~~v~Cs~~~L~~iP~~lp--~~l~~L~Ls~N~i~~~~~~~~f~~l~~L~~L~L~~N~i~~~~~~~~~~~~~L~~L~Ls~   87 (192)
T d1w8aa_          10 GTTVDCTGRGLKEIPRDIP--LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGE   87 (192)
T ss_dssp             TTEEECTTSCCSSCCSCCC--TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCS
T ss_pred             CCEEEEeCCCcCccCCCCC--CCCCEEEeCCCCCcccccccccCCCceEeeeeccccccccccccccccccccceeeecc
Confidence            4678999999999998764  789999999999975 4 46679999999999999544444455688999999999999


Q ss_pred             ccccccccc--CCCccCCCceeeecCcccccCcccchhhhhcCcccccceEEeeccCC
Q 039689          277 VGSLEEMLM--LKSLVHLQGTLEISRLENVKGVGDASEVQLNSKVNLKALYLQWGVRD  332 (763)
Q Consensus       277 ~~~l~~l~~--l~~L~~L~~~L~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~  332 (763)
                      |. +..++.  +.++++|+ .|.+.+    +.+.......|..+++|++|+++.|...
T Consensus        88 N~-l~~l~~~~F~~l~~L~-~L~L~~----N~l~~i~~~~f~~l~~L~~l~L~~N~~~  139 (192)
T d1w8aa_          88 NK-IKEISNKMFLGLHQLK-TLNLYD----NQISCVMPGSFEHLNSLTSLNLASNPFN  139 (192)
T ss_dssp             CC-CCEECSSSSTTCTTCC-EEECCS----SCCCEECTTSSTTCTTCCEEECTTCCBC
T ss_pred             cc-ccccCHHHHhCCCccc-ccccCC----ccccccCHHHhcCCcccccccccccccc
Confidence            98 888875  78888888 888866    3445555667888999999999887543

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=98.96  E-value=9.1e-12  Score=115.44  Aligned_cols=106  Identities=21%  Similarity=0.246  Sum_probs=87.5

Q ss_pred             hhccCCCCcccEEEecCCCCCccCcccCCCCcccEEecCCCCchhcchhhhhcccccEEeeccccccccccccccCcccc
Q 039689          190 LQRLLNLPRLRVFSLRGYNIFELPKAIENLKHLRFLDLSTTKIEILRESINTLYNLHTLLLEDCRRLKKLCKDMGNLTKL  269 (763)
Q Consensus       190 ~~~~~~l~~Lr~L~L~~~~i~~lp~~~~~l~~L~~L~L~~~~i~~lp~~~~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L  269 (763)
                      +.++..+++|++|+|++|.|+.++ .+..+++|++|+|++|.|+.+|..+..+++|++|++++ +.+..++. +..+++|
T Consensus        41 ~~sl~~L~~L~~L~Ls~n~I~~i~-~l~~l~~L~~L~Ls~N~i~~i~~~~~~~~~L~~L~l~~-N~i~~l~~-~~~l~~L  117 (198)
T d1m9la_          41 DATLSTLKACKHLALSTNNIEKIS-SLSGMENLRILSLGRNLIKKIENLDAVADTLEELWISY-NQIASLSG-IEKLVNL  117 (198)
T ss_dssp             HHHHHHTTTCCEEECSEEEESCCC-CHHHHTTCCEEECCEEEECSCSSHHHHHHHCCEEECSE-EECCCHHH-HHHHHHS
T ss_pred             hhHHhcccccceeECcccCCCCcc-cccCCccccChhhccccccccccccccccccccccccc-cccccccc-ccccccc
Confidence            456677899999999999999885 58899999999999999999987778888999999999 47877754 8899999


Q ss_pred             cccccCCcccccccc---cCCCccCCCceeeecC
Q 039689          270 HHLNNSNVGSLEEML---MLKSLVHLQGTLEISR  300 (763)
Q Consensus       270 ~~L~l~~~~~l~~l~---~l~~L~~L~~~L~~~~  300 (763)
                      ++|++++|. +..++   .++.+++|+ .+.+.+
T Consensus       118 ~~L~L~~N~-i~~~~~~~~l~~l~~L~-~L~L~~  149 (198)
T d1m9la_         118 RVLYMSNNK-ITNWGEIDKLAALDKLE-DLLLAG  149 (198)
T ss_dssp             SEEEESEEE-CCCHHHHHHHTTTTTCS-EEEECS
T ss_pred             cccccccch-hccccccccccCCCccc-eeecCC
Confidence            999999987 65544   366777777 677665

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=98.93  E-value=4.8e-12  Score=117.38  Aligned_cols=84  Identities=25%  Similarity=0.264  Sum_probs=67.8

Q ss_pred             CcccEEEecCC--CCCccCcccCCCCcccEEecCCCCchhcchhhhhcccccEEeeccccccccccccccCccccccccc
Q 039689          197 PRLRVFSLRGY--NIFELPKAIENLKHLRFLDLSTTKIEILRESINTLYNLHTLLLEDCRRLKKLCKDMGNLTKLHHLNN  274 (763)
Q Consensus       197 ~~Lr~L~L~~~--~i~~lp~~~~~l~~L~~L~L~~~~i~~lp~~~~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l  274 (763)
                      ...+.+++.+.  .+..+|.++..+++|++|+|++|.|+.++ .++.+++|++|++++ +.+..+|.....+++|++|++
T Consensus        23 ~~~~~~~l~~~~~~i~~l~~sl~~L~~L~~L~Ls~n~I~~i~-~l~~l~~L~~L~Ls~-N~i~~i~~~~~~~~~L~~L~l  100 (198)
T d1m9la_          23 TEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEKIS-SLSGMENLRILSLGR-NLIKKIENLDAVADTLEELWI  100 (198)
T ss_dssp             TTCSCEECCBCCTTCCCCHHHHHHTTTCCEEECSEEEESCCC-CHHHHTTCCEEECCE-EEECSCSSHHHHHHHCCEEEC
T ss_pred             cccceeeeecccCchhhhhhHHhcccccceeECcccCCCCcc-cccCCccccChhhcc-ccccccccccccccccccccc
Confidence            34455666654  37778888999999999999999999986 699999999999999 578888876666778999999


Q ss_pred             CCccccccc
Q 039689          275 SNVGSLEEM  283 (763)
Q Consensus       275 ~~~~~l~~l  283 (763)
                      ++|. +..+
T Consensus       101 ~~N~-i~~l  108 (198)
T d1m9la_         101 SYNQ-IASL  108 (198)
T ss_dssp             SEEE-CCCH
T ss_pred             cccc-cccc
Confidence            9886 4433

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.91  E-value=4.5e-10  Score=99.91  Aligned_cols=89  Identities=19%  Similarity=0.210  Sum_probs=77.3

Q ss_pred             cCCCCcccEEEecCCCCCccCcccCCCCcccEEecCCCCchhcchh-hhhcccccEEeeccccccccccc--cccCcccc
Q 039689          193 LLNLPRLRVFSLRGYNIFELPKAIENLKHLRFLDLSTTKIEILRES-INTLYNLHTLLLEDCRRLKKLCK--DMGNLTKL  269 (763)
Q Consensus       193 ~~~l~~Lr~L~L~~~~i~~lp~~~~~l~~L~~L~L~~~~i~~lp~~-~~~L~~L~~L~L~~~~~l~~lp~--~i~~L~~L  269 (763)
                      +..+++|++|++++|.++.++ .|..+++|++|++++|.++.+|+. +..+++|++|++++ +.+..+++  .+..+++|
T Consensus        37 ~~~l~~L~~L~Ls~N~i~~l~-~~~~l~~L~~L~ls~N~i~~l~~~~~~~l~~L~~L~L~~-N~i~~~~~l~~l~~l~~L  114 (162)
T d1a9na_          37 GATLDQFDAIDFSDNEIRKLD-GFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELILTN-NSLVELGDLDPLASLKSL  114 (162)
T ss_dssp             GGGTTCCSEEECCSSCCCEEC-CCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCEEECCS-CCCCCGGGGGGGGGCTTC
T ss_pred             ccccccCCEEECCCCCCCccC-CcccCcchhhhhcccccccCCCccccccccccccceecc-cccccccccccccccccc
Confidence            367899999999999999984 589999999999999999999765 47899999999999 57777764  58899999


Q ss_pred             cccccCCcccccccc
Q 039689          270 HHLNNSNVGSLEEML  284 (763)
Q Consensus       270 ~~L~l~~~~~l~~l~  284 (763)
                      ++|++++|. +...+
T Consensus       115 ~~L~l~~N~-i~~~~  128 (162)
T d1a9na_         115 TYLCILRNP-VTNKK  128 (162)
T ss_dssp             CEEECCSSG-GGGST
T ss_pred             chhhcCCCc-ccccc
Confidence            999999998 65554

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.89  E-value=5.1e-11  Score=127.21  Aligned_cols=83  Identities=20%  Similarity=0.293  Sum_probs=38.9

Q ss_pred             CCCcccEEEecCCCCCc-----cCcccCCCCcccEEecCCCCchhc-----chhhh-hcccccEEeecccccccc-----
Q 039689          195 NLPRLRVFSLRGYNIFE-----LPKAIENLKHLRFLDLSTTKIEIL-----RESIN-TLYNLHTLLLEDCRRLKK-----  258 (763)
Q Consensus       195 ~l~~Lr~L~L~~~~i~~-----lp~~~~~l~~L~~L~L~~~~i~~l-----p~~~~-~L~~L~~L~L~~~~~l~~-----  258 (763)
                      .++++|+|+|++|.++.     +...+..+++|++|||++|.|+..     ...+. .-.+|++|+|++|. +..     
T Consensus        25 ~l~~l~~L~L~~~~i~~~~~~~l~~~L~~~~~L~~LdLs~N~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~-it~~~~~~  103 (460)
T d1z7xw1          25 LLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCC-LTGAGCGV  103 (460)
T ss_dssp             HHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCSTTCCCCEEECTTSC-CBGGGHHH
T ss_pred             hCCCCCEEEeCCCCCCHHHHHHHHHHHhcCCCCCEEECcCCcCChHHHHHHHHHHhcCCCCCCEEECCCCC-cccccccc
Confidence            34555555555555442     223344555555555555555421     11111 11345555555542 321     


Q ss_pred             ccccccCcccccccccCCcc
Q 039689          259 LCKDMGNLTKLHHLNNSNVG  278 (763)
Q Consensus       259 lp~~i~~L~~L~~L~l~~~~  278 (763)
                      ++..+..+++|++|++++|.
T Consensus       104 l~~~l~~~~~L~~L~L~~N~  123 (460)
T d1z7xw1         104 LSSTLRTLPTLQELHLSDNL  123 (460)
T ss_dssp             HHHHTTSCTTCCEEECCSSB
T ss_pred             ccchhhcccccccccccccc
Confidence            23344555555555555554

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.88  E-value=6e-11  Score=126.64  Aligned_cols=81  Identities=11%  Similarity=0.166  Sum_probs=60.7

Q ss_pred             CcccEEEecCCCCCcc--CcccCCCCcccEEecCCCCch-----hcchhhhhcccccEEeecccccccc-----cccccc
Q 039689          197 PRLRVFSLRGYNIFEL--PKAIENLKHLRFLDLSTTKIE-----ILRESINTLYNLHTLLLEDCRRLKK-----LCKDMG  264 (763)
Q Consensus       197 ~~Lr~L~L~~~~i~~l--p~~~~~l~~L~~L~L~~~~i~-----~lp~~~~~L~~L~~L~L~~~~~l~~-----lp~~i~  264 (763)
                      .+|+.||+++++++..  ..-+..++++++|+|++|+++     .+...+...++|++|||++| .+..     +...+.
T Consensus         2 ~~l~~ld~~~~~i~~~~~~~l~~~l~~l~~L~L~~~~i~~~~~~~l~~~L~~~~~L~~LdLs~N-~i~~~~~~~l~~~l~   80 (460)
T d1z7xw1           2 LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSN-ELGDVGVHCVLQGLQ   80 (460)
T ss_dssp             EEEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTC-CCHHHHHHHHHHTTC
T ss_pred             CCCCEEEeeCCcCChHHHHHHHHhCCCCCEEEeCCCCCCHHHHHHHHHHHhcCCCCCEEECcCC-cCChHHHHHHHHHHh
Confidence            3689999999998763  455677899999999999886     34667788899999999985 4532     233332


Q ss_pred             C-cccccccccCCcc
Q 039689          265 N-LTKLHHLNNSNVG  278 (763)
Q Consensus       265 ~-L~~L~~L~l~~~~  278 (763)
                      . ..+|++|++++|.
T Consensus        81 ~~~~~L~~L~L~~n~   95 (460)
T d1z7xw1          81 TPSCKIQKLSLQNCC   95 (460)
T ss_dssp             STTCCCCEEECTTSC
T ss_pred             cCCCCCCEEECCCCC
Confidence            2 3478999998886

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.80  E-value=3.2e-09  Score=93.60  Aligned_cols=89  Identities=18%  Similarity=0.170  Sum_probs=77.1

Q ss_pred             hhhccCCCCcccEEEecCCC-CCccC-cccCCCCcccEEecCCCCchhc-chhhhhcccccEEeeccccccccccccccC
Q 039689          189 VLQRLLNLPRLRVFSLRGYN-IFELP-KAIENLKHLRFLDLSTTKIEIL-RESINTLYNLHTLLLEDCRRLKKLCKDMGN  265 (763)
Q Consensus       189 ~~~~~~~l~~Lr~L~L~~~~-i~~lp-~~~~~l~~L~~L~L~~~~i~~l-p~~~~~L~~L~~L~L~~~~~l~~lp~~i~~  265 (763)
                      .+..+..+++|+.|++++++ ++.++ ..|.++++|+.|+|++|.|+.+ |.+|..+++|++|+|++ +.+..+|.++..
T Consensus        23 ~p~~l~~l~~l~~L~l~~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~Ls~-N~l~~l~~~~~~  101 (156)
T d2ifga3          23 SLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSF-NALESLSWKTVQ  101 (156)
T ss_dssp             TTTTSCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCS-SCCSCCCSTTTC
T ss_pred             CcccccCccccCeeecCCCccccccCchhhccccccCcceeeccccCCcccccccccccccceeccC-CCCcccChhhhc
Confidence            46667888999999998765 88885 6799999999999999999998 56789999999999999 688999988666


Q ss_pred             cccccccccCCcc
Q 039689          266 LTKLHHLNNSNVG  278 (763)
Q Consensus       266 L~~L~~L~l~~~~  278 (763)
                      ..+|++|++++|.
T Consensus       102 ~~~l~~L~L~~Np  114 (156)
T d2ifga3         102 GLSLQELVLSGNP  114 (156)
T ss_dssp             SCCCCEEECCSSC
T ss_pred             cccccccccCCCc
Confidence            6689999999987

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.51  E-value=1.1e-07  Score=83.33  Aligned_cols=88  Identities=15%  Similarity=0.120  Sum_probs=74.7

Q ss_pred             CCcccEEEecCCCCCccCcccCCCCcccEEecCCC-Cchhcc-hhhhhcccccEEeeccccccccccc-cccCccccccc
Q 039689          196 LPRLRVFSLRGYNIFELPKAIENLKHLRFLDLSTT-KIEILR-ESINTLYNLHTLLLEDCRRLKKLCK-DMGNLTKLHHL  272 (763)
Q Consensus       196 l~~Lr~L~L~~~~i~~lp~~~~~l~~L~~L~L~~~-~i~~lp-~~~~~L~~L~~L~L~~~~~l~~lp~-~i~~L~~L~~L  272 (763)
                      +....+++.+++.+...|..+..+++|+.|+++++ .++.++ .+|.++++|+.|++++ +.+..+++ .|..+++|++|
T Consensus         7 c~~~~~l~c~~~~~~~~p~~l~~l~~l~~L~l~~n~~l~~i~~~~f~~l~~L~~L~Ls~-N~l~~i~~~~f~~l~~L~~L   85 (156)
T d2ifga3           7 PHGSSGLRCTRDGALDSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVK-SGLRFVAPDAFHFTPRLSRL   85 (156)
T ss_dssp             CSSSSCEECCSSCCCTTTTTSCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCS-SCCCEECTTGGGSCSCCCEE
T ss_pred             cCCCCeEEecCCCCccCcccccCccccCeeecCCCccccccCchhhccccccCcceeec-cccCCcccccccccccccce
Confidence            34456788899999999999999999999999876 599885 5689999999999999 57888854 49999999999


Q ss_pred             ccCCccccccccc
Q 039689          273 NNSNVGSLEEMLM  285 (763)
Q Consensus       273 ~l~~~~~l~~l~~  285 (763)
                      +|++|. ++.++.
T Consensus        86 ~Ls~N~-l~~l~~   97 (156)
T d2ifga3          86 NLSFNA-LESLSW   97 (156)
T ss_dssp             ECCSSC-CSCCCS
T ss_pred             eccCCC-CcccCh
Confidence            999998 665553

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=98.15  E-value=2.4e-08  Score=101.36  Aligned_cols=88  Identities=26%  Similarity=0.267  Sum_probs=59.5

Q ss_pred             hhccCCCCcccEEEecCCCCCc-----cCcccCCCCcccEEecCCCCchh-----------cchhhhhcccccEEeeccc
Q 039689          190 LQRLLNLPRLRVFSLRGYNIFE-----LPKAIENLKHLRFLDLSTTKIEI-----------LRESINTLYNLHTLLLEDC  253 (763)
Q Consensus       190 ~~~~~~l~~Lr~L~L~~~~i~~-----lp~~~~~l~~L~~L~L~~~~i~~-----------lp~~~~~L~~L~~L~L~~~  253 (763)
                      ...+.....|+.|+|++|.+..     +-..+...++|+.|+++++....           +...+...++|+.|+|++|
T Consensus        24 ~~~L~~~~~l~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~l~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~L~~L~L~~n  103 (344)
T d2ca6a1          24 FAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDN  103 (344)
T ss_dssp             SHHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSC
T ss_pred             HHHHhhCCCCCEEECcCCcCCHHHHHHHHHHHHhCCCCCEEECCCCcccccccccchHHHHHHHHHhhCCCccccccccc
Confidence            4445667888888888887643     33556778888888888764331           2234455678888888885


Q ss_pred             ccccc-----ccccccCcccccccccCCcc
Q 039689          254 RRLKK-----LCKDMGNLTKLHHLNNSNVG  278 (763)
Q Consensus       254 ~~l~~-----lp~~i~~L~~L~~L~l~~~~  278 (763)
                      . +..     +...+...++|++|++++|.
T Consensus       104 ~-i~~~~~~~l~~~l~~~~~L~~L~l~~n~  132 (344)
T d2ca6a1         104 A-FGPTAQEPLIDFLSKHTPLEHLYLHNNG  132 (344)
T ss_dssp             C-CCTTTHHHHHHHHHHCTTCCEEECCSSC
T ss_pred             c-cccccccchhhhhcccccchheeccccc
Confidence            3 322     34445567888888888875

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=97.72  E-value=2.5e-06  Score=86.03  Aligned_cols=90  Identities=20%  Similarity=0.230  Sum_probs=53.6

Q ss_pred             hhhccCCCCcccEEEecCCCCCc-----cCcccCCCCcccEEecCCCCchhc-----ch---------hhhhcccccEEe
Q 039689          189 VLQRLLNLPRLRVFSLRGYNIFE-----LPKAIENLKHLRFLDLSTTKIEIL-----RE---------SINTLYNLHTLL  249 (763)
Q Consensus       189 ~~~~~~~l~~Lr~L~L~~~~i~~-----lp~~~~~l~~L~~L~L~~~~i~~l-----p~---------~~~~L~~L~~L~  249 (763)
                      +.+.+..+++|+.|++++|.++.     +...+...++|++|++++|.+..-     ..         .....+.|+.|+
T Consensus        85 l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~~~~~~~~~~L~~l~  164 (344)
T d2ca6a1          85 LLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSII  164 (344)
T ss_dssp             HHHHHTTCTTCCEEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEE
T ss_pred             HHHHHhhCCCcccccccccccccccccchhhhhcccccchheecccccccccccccccccccccccccccccCcccceee
Confidence            44455667778888888777654     234445667788888877765421     11         113445677777


Q ss_pred             eccccc----cccccccccCcccccccccCCcc
Q 039689          250 LEDCRR----LKKLCKDMGNLTKLHHLNNSNVG  278 (763)
Q Consensus       250 L~~~~~----l~~lp~~i~~L~~L~~L~l~~~~  278 (763)
                      ++++..    ...+...+...++|++|++++|.
T Consensus       165 l~~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~  197 (344)
T d2ca6a1         165 CGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNG  197 (344)
T ss_dssp             CCSSCCTGGGHHHHHHHHHHCTTCCEEECCSSC
T ss_pred             cccccccccccccccchhhhhhhhccccccccc
Confidence            776421    12233345556677777777775

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.71  E-value=3.2e-06  Score=74.38  Aligned_cols=60  Identities=23%  Similarity=0.377  Sum_probs=39.9

Q ss_pred             CCCCcccEEEecCCCCCccC---cccCCCCcccEEecCCCCchhcch-hhhhcccccEEeeccc
Q 039689          194 LNLPRLRVFSLRGYNIFELP---KAIENLKHLRFLDLSTTKIEILRE-SINTLYNLHTLLLEDC  253 (763)
Q Consensus       194 ~~l~~Lr~L~L~~~~i~~lp---~~~~~l~~L~~L~L~~~~i~~lp~-~~~~L~~L~~L~L~~~  253 (763)
                      ..++.|++|+|++|+|+.++   ..+..+++|++|+|++|.|+++++ ......+|+.|++++|
T Consensus        62 ~~~~~L~~L~Ls~N~i~~l~~~~~~~~~l~~L~~L~Ls~N~i~~l~~l~~l~~~~L~~L~L~~N  125 (162)
T d1koha1          62 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEELWLDGN  125 (162)
T ss_dssp             HHCTTCCCCCCCSSCCCCCSGGGTHHHHSTTCCCCCCTTSCCCCGGGHHHHTTCCCSSCCCTTS
T ss_pred             HhCCCCCEeeCCCccccCCchhHHHHhhCCcccccccccCccccchhhhhhhccccceeecCCC
Confidence            45677777777777777653   345667777777777777777654 2233446777777774

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.53  E-value=2.4e-06  Score=75.25  Aligned_cols=65  Identities=25%  Similarity=0.131  Sum_probs=47.0

Q ss_pred             CcccCCCCcccEEecCCCCchhc---chhhhhcccccEEeecccccccccccc-ccCcccccccccCCcc
Q 039689          213 PKAIENLKHLRFLDLSTTKIEIL---RESINTLYNLHTLLLEDCRRLKKLCKD-MGNLTKLHHLNNSNVG  278 (763)
Q Consensus       213 p~~~~~l~~L~~L~L~~~~i~~l---p~~~~~L~~L~~L~L~~~~~l~~lp~~-i~~L~~L~~L~l~~~~  278 (763)
                      +..+..+++|++|+|++|.|+.+   +..+..+++|++|+|++ +.+..+++- .....+|++|++++|.
T Consensus        58 ~~~~~~~~~L~~L~Ls~N~i~~l~~~~~~~~~l~~L~~L~Ls~-N~i~~l~~l~~l~~~~L~~L~L~~Np  126 (162)
T d1koha1          58 RIIEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSG-NELKSERELDKIKGLKLEELWLDGNS  126 (162)
T ss_dssp             HHHHHHCTTCCCCCCCSSCCCCCSGGGTHHHHSTTCCCCCCTT-SCCCCGGGHHHHTTCCCSSCCCTTST
T ss_pred             HHHHHhCCCCCEeeCCCccccCCchhHHHHhhCCccccccccc-CccccchhhhhhhccccceeecCCCC
Confidence            33445678888888888888765   45577888888888888 577777652 2334568888888886

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=95.91  E-value=0.003  Score=54.94  Aligned_cols=84  Identities=23%  Similarity=0.188  Sum_probs=61.7

Q ss_pred             CCCCcccEEEecCC-CCCc-----cCcccCCCCcccEEecCCCCch-----hcchhhhhcccccEEeecccccccc----
Q 039689          194 LNLPRLRVFSLRGY-NIFE-----LPKAIENLKHLRFLDLSTTKIE-----ILRESINTLYNLHTLLLEDCRRLKK----  258 (763)
Q Consensus       194 ~~l~~Lr~L~L~~~-~i~~-----lp~~~~~l~~L~~L~L~~~~i~-----~lp~~~~~L~~L~~L~L~~~~~l~~----  258 (763)
                      .+.+.|+.|+|+++ .++.     +-..+...++|++|+|++|.+.     .+-..+..-+.|++|+|++| .+..    
T Consensus        12 ~n~~~L~~L~L~~~~~i~~~~~~~l~~~L~~n~~L~~L~Ls~n~l~~~~~~~la~~L~~n~~L~~L~L~~n-~i~~~g~~   90 (167)
T d1pgva_          12 EDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESN-FLTPELLA   90 (167)
T ss_dssp             TTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSS-BCCHHHHH
T ss_pred             hCCCCCcEEEeCCCCCCCHHHHHHHHHHHhhCCccceeeccccccchhHHHHHhhhhhhcccccceeeehh-hcchHHHH
Confidence            56789999999875 4543     2345677889999999999876     23456677788999999996 4432    


Q ss_pred             -ccccccCcccccccccCCcc
Q 039689          259 -LCKDMGNLTKLHHLNNSNVG  278 (763)
Q Consensus       259 -lp~~i~~L~~L~~L~l~~~~  278 (763)
                       +-..+..-+.|++|+++++.
T Consensus        91 ~l~~aL~~n~sL~~L~l~~n~  111 (167)
T d1pgva_          91 RLLRSTLVTQSIVEFKADNQR  111 (167)
T ss_dssp             HHHHHTTTTCCCSEEECCCCS
T ss_pred             HHHHHHHhCCcCCEEECCCCc
Confidence             33346667789999988775

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=95.76  E-value=0.0042  Score=53.91  Aligned_cols=84  Identities=21%  Similarity=0.174  Sum_probs=59.6

Q ss_pred             CCCCcccEEEecCC-CCCc-----cCcccCCCCcccEEecCCCCch-----hcchhhhhcccccEEeecccccc----cc
Q 039689          194 LNLPRLRVFSLRGY-NIFE-----LPKAIENLKHLRFLDLSTTKIE-----ILRESINTLYNLHTLLLEDCRRL----KK  258 (763)
Q Consensus       194 ~~l~~Lr~L~L~~~-~i~~-----lp~~~~~l~~L~~L~L~~~~i~-----~lp~~~~~L~~L~~L~L~~~~~l----~~  258 (763)
                      .+.+.|+.|+++++ .++.     +-..+...++|+.|+|++|.++     .+-..+.....++.+++++|..-    ..
T Consensus        14 ~~~~~L~~L~L~~~~~i~~~~~~~l~~al~~n~~L~~L~Ls~n~l~~~~~~~L~~~l~~~~~l~~l~l~~~~~~~~g~~~   93 (166)
T d1io0a_          14 NNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILA   93 (166)
T ss_dssp             TTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHH
T ss_pred             hcCCCCcEEEcCCCCCCCHHHHHHHHHHHhcCCccCeeeccCCcccHHHHHHHHHHHhhcccchhhhhccccccchhHHH
Confidence            66789999999974 4543     2355678899999999999876     24456677889999999986432    23


Q ss_pred             ccccccCcccccccccCCc
Q 039689          259 LCKDMGNLTKLHHLNNSNV  277 (763)
Q Consensus       259 lp~~i~~L~~L~~L~l~~~  277 (763)
                      +...+...++|+.++++.+
T Consensus        94 l~~~l~~~~~L~~l~L~l~  112 (166)
T d1io0a_          94 LVEALQSNTSLIELRIDNQ  112 (166)
T ss_dssp             HHHGGGGCSSCCEEECCCC
T ss_pred             HHHHHHhCccccEEeeccC
Confidence            3455667778887666543

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=95.29  E-value=0.0032  Score=54.73  Aligned_cols=89  Identities=18%  Similarity=0.178  Sum_probs=63.5

Q ss_pred             hhhccCCCCcccEEEecCCCCCc-----cCcccCCCCcccEEecCCCCchh-----cchhhhhcccccEEeecccccccc
Q 039689          189 VLQRLLNLPRLRVFSLRGYNIFE-----LPKAIENLKHLRFLDLSTTKIEI-----LRESINTLYNLHTLLLEDCRRLKK  258 (763)
Q Consensus       189 ~~~~~~~l~~Lr~L~L~~~~i~~-----lp~~~~~l~~L~~L~L~~~~i~~-----lp~~~~~L~~L~~L~L~~~~~l~~  258 (763)
                      +...+...+.|+.|++++|.+..     +-..+...+.|++|+|++|.++.     +-..+..-+.|++|+++++ ....
T Consensus        36 l~~~L~~n~~L~~L~Ls~n~l~~~~~~~la~~L~~n~~L~~L~L~~n~i~~~g~~~l~~aL~~n~sL~~L~l~~n-~~~~  114 (167)
T d1pgva_          36 LIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLLRSTLVTQSIVEFKADNQ-RQSV  114 (167)
T ss_dssp             HHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHHHHTTTTCCCSEEECCCC-SSCC
T ss_pred             HHHHHhhCCccceeeccccccchhHHHHHhhhhhhcccccceeeehhhcchHHHHHHHHHHHhCCcCCEEECCCC-cCCC
Confidence            45566778899999999998764     22455677899999999998873     3345666688999999874 2222


Q ss_pred             --------ccccccCcccccccccCCcc
Q 039689          259 --------LCKDMGNLTKLHHLNNSNVG  278 (763)
Q Consensus       259 --------lp~~i~~L~~L~~L~l~~~~  278 (763)
                              +...+..-++|+.|+++.+.
T Consensus       115 ~g~~~~~~l~~~L~~n~sL~~l~l~~~~  142 (167)
T d1pgva_         115 LGNQVEMDMMMAIEENESLLRVGISFAS  142 (167)
T ss_dssp             CCHHHHHHHHHHHHHCSSCCEEECCCCC
T ss_pred             ccHHHHHHHHHHHHhCCCccEeeCcCCC
Confidence                    33345556778888776653

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=94.12  E-value=0.011  Score=51.11  Aligned_cols=90  Identities=17%  Similarity=0.208  Sum_probs=66.1

Q ss_pred             hhhccCCCCcccEEEecCCCCCc-----cCcccCCCCcccEEecCCCCch-----hcchhhhhcccccEEeeccc-cccc
Q 039689          189 VLQRLLNLPRLRVFSLRGYNIFE-----LPKAIENLKHLRFLDLSTTKIE-----ILRESINTLYNLHTLLLEDC-RRLK  257 (763)
Q Consensus       189 ~~~~~~~l~~Lr~L~L~~~~i~~-----lp~~~~~l~~L~~L~L~~~~i~-----~lp~~~~~L~~L~~L~L~~~-~~l~  257 (763)
                      +...+...++|+.|++++|.++.     +-..+...+.++.+++++|.+.     .+-..+...++|+.++|+.+ +.+.
T Consensus        38 l~~al~~n~~L~~L~Ls~n~l~~~~~~~L~~~l~~~~~l~~l~l~~~~~~~~g~~~l~~~l~~~~~L~~l~L~l~~n~i~  117 (166)
T d1io0a_          38 CAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILALVEALQSNTSLIELRIDNQSQPLG  117 (166)
T ss_dssp             HHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHHHHHGGGGCSSCCEEECCCCSSCCC
T ss_pred             HHHHHhcCCccCeeeccCCcccHHHHHHHHHHHhhcccchhhhhccccccchhHHHHHHHHHhCccccEEeeccCCCcCc
Confidence            45556788999999999998764     2245667899999999999875     34567778899998777643 2332


Q ss_pred             -----cccccccCcccccccccCCcc
Q 039689          258 -----KLCKDMGNLTKLHHLNNSNVG  278 (763)
Q Consensus       258 -----~lp~~i~~L~~L~~L~l~~~~  278 (763)
                           .+...+...++|+.|+++.+.
T Consensus       118 ~~~~~~La~~L~~n~~L~~L~l~~~~  143 (166)
T d1io0a_         118 NNVEMEIANMLEKNTTLLKFGYHFTQ  143 (166)
T ss_dssp             HHHHHHHHHHHHHCSSCCEEECCCSS
T ss_pred             HHHHHHHHHHHHhCCCcCEEeCcCCC
Confidence                 244556678889999887664