Citrus Sinensis ID: 039690

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210------
Protein Sequence
EEDSIKNLEVPCSCSGSLKYAHRKCVQRWCNEKGDVTCEICHQPYQPGYTAPPPPPQSEDTTIDISEAWTVSGAPLDLHDPRLVAMAAAERHLLDAEYDEYADTNASGAAFCRSAALILMALLLLRHALTLTNSDDGEDDASTFFSLFLLRAAGFLLPCYIMAWAVSILQRRRQRQEAAALAATEVAFMIQAGQRRGLHFTIAPGPAVTPHQEPLQ
Secondary Structure (PSIPRED)
ccccccccccccccccHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccEEccccEEEEccccccccHHHHHHHHHHHHHHcccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccEEEEEcccccccccccccc
Secondary Structure Prediction (SSPRO)
cccccccccccccccccHHHHHHHHHHHHHHcccccEEEEEcccccccccccccccccccEEEEEcccEEEcccccccccccEEEEEcHHHHHccccHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccEEEEEEcccccccccccccc
Coil and Loop (DISEMBL)
eedsiknlevpcscsgslkyaHRKCVQRWcnekgdvtceichqpyqpgytapppppqsedttidiseawtvsgapldlhdpRLVAMAAAERHLLDAEYdeyadtnasgaAFCRSAALILMALLLLRHALtltnsddgeddaSTFFSLFLLRAAGFLLPCYIMAWAVSILQRRRQRQEAAALAATEVAFMIQAGqrrglhftiapgpavtphqeplq
Flexible Loop (DISEMBL)
eedsiknlevpcscsgslkyaHRKCVQRWCNEKGDVTCEICHQPYQPGYTAPPPPPQSEDTTIDISEAWTVSGAPLDLHDPRLVAMAAAERHLLDAEYDEYADTNASGAAFCRSAALILMALLLLRHALTLTNSDDGEDDASTFFSLFLLRAAGFLLPCYIMAWAVSILQRRRQRQEAAALAATEVAFMIQAGQRRGLHFTIApgpavtphqeplq
Low Complexity Region (SEG)
EEDSIKNLEVPCSCSGSLKYAHRKCVQRWCNEKGDVTCEICHqpyqpgytapppppqSEDTTIDISEAWTVSGAPLDLHDPRLVAMAAAERHLLDAEYDEYADTNASGAAFCRSaalilmallllrhaltlTNSDDGEDDASTFFSLFLLRAAGFLLPCYIMAWAVSIlqrrrqrqeaaalaaTEVAFMIQAGQRRGLHFTIAPGPAVTPHQEPLQ
Disordered region (IsUnstruct)
********EVPCSCSGSLKYAHRKCVQRWCNEKGDVTCEICHQPY*******************ISEAWTVSGAPLDLHDPRLVAMAAAERHLLDAEYDEYADTNASGAAFCRSAALILMALLLLRHALTLTNSDDGEDDASTFFSLFLLRAAGFLLPCYIMAWAVSILQRRRQRQEAAALAATEVAFMIQAGQRRGLHFTIA*************
Disordered Region (DISOPRED)
***SIKNLEVPCSCSGSLKYAHRKCVQRWCNEKGDVTCEICHQPYQPGYTAPPPPPQSEDTTIDISEAWTVSGAPLDLHDPRLVAMAAAERHLLDAEYDEYADTNASGAAFCRSAALILMALLLLRHALTLTNSDDGEDDASTFFSLFLLRAAGFLLPCYIMAWAVSILQRRRQRQ****************************************
Disordered Region (DISEMBL)
*********VPCSCSGSLKYAHRKCVQRWCNEKGDVTCEICHQPYQPGYTAPPPPPQSEDTTIDISEAWTVSGAPLDLHDPRLVAMAAAERHLLDAEYDEYADTNASGAAFCRSAALILMALLLLRHALTLTNSDDGEDDASTFFSLFLLRAAGFLLPCYIMAWAVSIL**********ALAATEVAFMIQAGQRRGLHFTIAPGPAVTPHQEPLQ
Disordered Region (DISPRO)
******NLEVPCSCSGSLKYAHRKCVQRWCNEKGDVTCEICHQPYQPGYTAPPPPPQSEDTTIDISEAWTVSGAPLDLHDPRLVAMAAAERHLLDAEYDEYADTNASGAAFCRSAALILMALLLLRHALTLTNSDDGEDDASTFFSLFLLRAAGFLLPCYIMAWAVSILQRRRQRQEAAALAATEVAFMIQAGQRRGLHFTIAPG***********
Transmembrane Helix (TMHMM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
EEDSIKNLEVPCSCSGSLKYAHRKCVQRWCNEKGDVTCEICHQPYQPGYTAPPPPPQSEDTTIDISEAWTVSGAPLDLHDPRLVAMAAAERHLLDAEYDEYADTNASGAAFCRSAALILMALLLLRHALTLTNSDDGEDDASTFFSLFLLRAAGFLLPCYIMAWAVSILQRRRQRQEAAALAATEVAFMIQAGQRRGLHFTIAPGPAVTPHQEPLQ
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	216	2.2.26 [Sep-21-2011]
Q0P496	421	E3 ubiquitin-protein liga	no	no	0.305	0.156	0.318	3e-05
P40318	1319	ERAD-associated E3 ubiqui	yes	no	0.166	0.027	0.431	5e-05
A6P320	398	E3 ubiquitin-protein liga	yes	no	0.263	0.143	0.350	6e-05
Q8CBH7	400	E3 ubiquitin-protein liga	yes	no	0.263	0.142	0.350	6e-05
A6NNE9	402	E3 ubiquitin-protein liga	yes	no	0.263	0.141	0.350	8e-05
Q86YJ5	346	E3 ubiquitin-protein liga	no	no	0.263	0.164	0.333	9e-05
Q3TZ87	348	E3 ubiquitin-protein liga	no	no	0.263	0.163	0.333	9e-05
Q80TE3	409	E3 ubiquitin-protein liga	no	no	0.305	0.161	0.303	0.0004
Q9P2E8	410	E3 ubiquitin-protein liga	no	no	0.305	0.160	0.318	0.0006

>sp|Q0P496|MARH4_DANRE E3 ubiquitin-protein ligase MARCH4 OS=Danio rerio GN=march4 PE=2 SV=1

 Score = 48.9 bits (115), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 21/66 (31%), Positives = 37/66 (56%)

Query: 11  PCSCSGSLKYAHRKCVQRWCNEKGDVTCEICHQPYQPGYTAPPPPPQSEDTTIDISEAWT 70
           PC CSGS++  H  C+ +W +E+G  +CE+C+  YQ    +   P Q +  ++ + E   
Sbjct: 158 PCRCSGSVRCTHEPCLIKWISERGSWSCELCYYKYQVIAISTKNPLQWQAISLTVIEKVQ 217

Query: 71  VSGAPL 76
           ++ A L
Sbjct: 218 IAAAVL 223

E3 ubiquitin-protein ligase. E3 ubiquitin ligases accept ubiquitin from an E2 ubiquitin-conjugating enzyme in the form of a thioester and then directly transfer the ubiquitin to targeted substrates.
Danio rerio (taxid: 7955)
EC: 6EC: .EC: 3EC: .EC: 2EC: .EC: -

>sp|P40318|DOA10_YEAST ERAD-associated E3 ubiquitin-protein ligase DOA10 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=SSM4 PE=1 SV=1

 Score = 48.1 bits (113), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 19/44 (43%), Positives = 22/44 (50%), Gaps = 8/44 (18%)

Query: 11 PCSCSGSLKYAHRKCVQRWCNEK--------GDVTCEICHQPYQ 46
          PC C GS+KY H  C+  W   K         DV C+ICH P Q
Sbjct: 55 PCKCRGSIKYMHESCLLEWVASKNIDISKPGADVKCDICHYPIQ 98

E3 ubiquitin-protein ligase which accepts ubiquitin specifically from endoplasmic reticulum-associated UBC6 and UBC7 E2 ligases, and transfers it to substrates promoting their degradation. Mediates the degradation of a broad range of substrates, inluding endoplasmic reticulum membrane proteins (ERQC), soluble nuclear proteins and soluble cytoplasmic proteins (CytoQC). Component of the DOA10 ubiquitin ligase complex, which is part of the ERAD-C pathway responsible for the rapid degradation of membrane proteins with misfolded cytoplasmic domains. ERAD-C substrates are ubiquitinated through DOA10 in conjunction with the E2 ubiquitin-conjugating enzymes UBC6 and UBC7-CUE1. Ubiquitinated substrates are then removed to the cytosol via the action of the UFD1-NPL4-CDC48/p97 (UNC) AAA ATPase complex and targeted to the proteasome. Also recognizes the N-terminally acetylated residue of proteins as degradation signal (degron). N-terminally acetylated target proteins include MATALPHA2, TBF1, SLK19, YMR090W, HIS3, HSP104, UBP6 and ARO8.

Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: -

>sp|A6P320|MARHB_RAT E3 ubiquitin-protein ligase MARCH11 OS=Rattus norvegicus GN=March11 PE=1 SV=1

 Score = 47.8 bits (112), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 20/57 (35%), Positives = 31/57 (54%)

Query: 11  PCSCSGSLKYAHRKCVQRWCNEKGDVTCEICHQPYQPGYTAPPPPPQSEDTTIDISE 67
           PC C GS++Y H+ C+ +W +E+G  TCE+C   Y         P Q +  +I + E
Sbjct: 181 PCRCDGSVRYTHQLCLLKWISERGSWTCELCCYRYHVTAIKMKQPCQWQSISITLVE 237

E3 ubiquitin-protein ligase that mediates polyubiquitination of CD4. E3 ubiquitin ligases accept ubiquitin from an E2 ubiquitin-conjugating enzyme in the form of a thioester and then directly transfer the ubiquitin to targeted substrates. May play a role in ubuquitin-dependent protein sorting in developmenting spermatids.

Rattus norvegicus (taxid: 10116)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: -

>sp|Q8CBH7|MARHB_MOUSE E3 ubiquitin-protein ligase MARCH11 OS=Mus musculus GN=March11 PE=2 SV=2

 Score = 47.8 bits (112), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 20/57 (35%), Positives = 31/57 (54%)

Query: 11  PCSCSGSLKYAHRKCVQRWCNEKGDVTCEICHQPYQPGYTAPPPPPQSEDTTIDISE 67
           PC C GS++Y H+ C+ +W +E+G  TCE+C   Y         P Q +  +I + E
Sbjct: 183 PCRCDGSVRYTHQLCLLKWISERGSWTCELCCYRYHVTAIKMKQPCQWQSISITLVE 239

E3 ubiquitin-protein ligase that mediates polyubiquitination of CD4. E3 ubiquitin ligases accept ubiquitin from an E2 ubiquitin-conjugating enzyme in the form of a thioester and then directly transfer the ubiquitin to targeted substrates. May play a role in ubuquitin-dependent protein sorting in developmenting spermatids.

Mus musculus (taxid: 10090)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: -

>sp|A6NNE9|MARHB_HUMAN E3 ubiquitin-protein ligase MARCH11 OS=Homo sapiens GN=MARCH11 PE=2 SV=3

 Score = 47.4 bits (111), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 20/57 (35%), Positives = 31/57 (54%)

Query: 11  PCSCSGSLKYAHRKCVQRWCNEKGDVTCEICHQPYQPGYTAPPPPPQSEDTTIDISE 67
           PC C GS++Y H+ C+ +W +E+G  TCE+C   Y         P Q +  +I + E
Sbjct: 185 PCRCDGSVRYTHQLCLLKWISERGSWTCELCCYRYHVIAIKMKQPCQWQSISITLVE 241

E3 ubiquitin-protein ligase that mediates polyubiquitination of CD4. E3 ubiquitin ligases accept ubiquitin from an E2 ubiquitin-conjugating enzyme in the form of a thioester and then directly transfer the ubiquitin to targeted substrates. May play a role in ubuquitin-dependent protein sorting in developmenting spermatids.

Homo sapiens (taxid: 9606)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: -

>sp|Q86YJ5|MARH9_HUMAN E3 ubiquitin-protein ligase MARCH9 OS=Homo sapiens GN=MARCH9 PE=1 SV=2

 Score = 47.0 bits (110), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 19/57 (33%), Positives = 33/57 (57%)

Query: 11  PCSCSGSLKYAHRKCVQRWCNEKGDVTCEICHQPYQPGYTAPPPPPQSEDTTIDISE 67
           PC C GS++  H+ C+ RW +E+G  +CE+C+  YQ    +   P Q +  ++ + E
Sbjct: 125 PCRCDGSVRCTHQPCLIRWISERGSWSCELCYFKYQVLAISTKNPLQWQAISLTVIE 181

E3 ubiquitin-protein ligase that may mediate ubiquitination of MHC-I, CD4 and ICAM1, and promote their subsequent endocytosis and sorting to lysosomes via multivesicular bodies. E3 ubiquitin ligases accept ubiquitin from an E2 ubiquitin-conjugating enzyme in the form of a thioester and then directly transfer the ubiquitin to targeted substrates.

Homo sapiens (taxid: 9606)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: -

>sp|Q3TZ87|MARH9_MOUSE E3 ubiquitin-protein ligase MARCH9 OS=Mus musculus GN=March9 PE=2 SV=1

 Score = 47.0 bits (110), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 19/57 (33%), Positives = 33/57 (57%)

Query: 11  PCSCSGSLKYAHRKCVQRWCNEKGDVTCEICHQPYQPGYTAPPPPPQSEDTTIDISE 67
           PC C GS++  H+ C+ RW +E+G  +CE+C+  YQ    +   P Q +  ++ + E
Sbjct: 125 PCRCDGSVRCTHQPCLIRWISERGSWSCELCYFKYQVLAISTKNPLQWQAISLTVIE 181

E3 ubiquitin-protein ligase that may mediate ubiquitination of MHC-I, CD4 and ICAM1, and promote their subsequent endocytosis and sorting to lysosomes via multivesicular bodies. E3 ubiquitin ligases accept ubiquitin from an E2 ubiquitin-conjugating enzyme in the form of a thioester and then directly transfer the ubiquitin to targeted substrates.

Mus musculus (taxid: 10090)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: -

>sp|Q80TE3|MARH4_MOUSE E3 ubiquitin-protein ligase MARCH4 OS=Mus musculus GN=March4 PE=2 SV=3

 Score = 45.1 bits (105), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 20/66 (30%), Positives = 36/66 (54%)

Query: 11  PCSCSGSLKYAHRKCVQRWCNEKGDVTCEICHQPYQPGYTAPPPPPQSEDTTIDISEAWT 70
           PC C GS+K  H+ C+ +W +E+G  +CE+C+  Y     +   P Q +  ++ + E   
Sbjct: 177 PCRCDGSVKCTHQPCLIKWISERGCWSCELCYYKYHVIAISTKNPLQWQAISLTVIEKVQ 236

Query: 71  VSGAPL 76
           ++ A L
Sbjct: 237 IAAAIL 242

E3 ubiquitin-protein ligase that may mediate ubiquitination of MHC-I and CD4, and promote their subsequent endocytosis and sorting to lysosomes via multivesicular bodies. E3 ubiquitin ligases accept ubiquitin from an E2 ubiquitin-conjugating enzyme in the form of a thioester and then directly transfer the ubiquitin to targeted substrates.

Mus musculus (taxid: 10090)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: -

>sp|Q9P2E8|MARH4_HUMAN E3 ubiquitin-protein ligase MARCH4 OS=Homo sapiens GN=MARCH4 PE=2 SV=2

 Score = 44.3 bits (103), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 21/66 (31%), Positives = 36/66 (54%)

Query: 11  PCSCSGSLKYAHRKCVQRWCNEKGDVTCEICHQPYQPGYTAPPPPPQSEDTTIDISEAWT 70
           PC C GS+K  H+ C+ +W +E+G  +CE+C+  Y     +   P Q +  ++ + E   
Sbjct: 178 PCRCDGSVKCTHQPCLIKWISERGCWSCELCYYKYHVIAISTKNPLQWQAISLTVIEKVQ 237

Query: 71  VSGAPL 76
           V+ A L
Sbjct: 238 VAAAIL 243

E3 ubiquitin-protein ligase that may mediate ubiquitination of MHC-I and CD4, and promote their subsequent endocytosis and sorting to lysosomes via multivesicular bodies. E3 ubiquitin ligases accept ubiquitin from an E2 ubiquitin-conjugating enzyme in the form of a thioester and then directly transfer the ubiquitin to targeted substrates.

Homo sapiens (taxid: 9606)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: -

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	216
225457415	291	PREDICTED: uncharacterized protein LOC10	0.990	0.735	0.894	1e-99
224109016	280	predicted protein [Populus trichocarpa]	0.990	0.764	0.818	4e-92
255547401	292	membrane associated ring finger 1,8, put	0.986	0.729	0.815	2e-91
255562860	283	membrane associated ring finger 1,8, put	0.990	0.756	0.813	2e-91
449439274	287	PREDICTED: uncharacterized protein LOC10	0.995	0.749	0.837	1e-89
224101351	280	predicted protein [Populus trichocarpa]	0.990	0.764	0.818	3e-87
356498276	286	PREDICTED: uncharacterized protein LOC10	0.981	0.741	0.788	7e-87
356499805	289	PREDICTED: uncharacterized protein LOC10	0.986	0.737	0.769	1e-86
356577396	286	PREDICTED: uncharacterized protein LOC10	0.981	0.741	0.775	9e-85
356519854	356	PREDICTED: uncharacterized protein LOC10	0.995	0.603	0.754	1e-82

>gi|225457415|ref|XP_002284912.1| PREDICTED: uncharacterized protein LOC100250124 [Vitis vinifera] gi|297733975|emb|CBI15222.3| unnamed protein product [Vitis vinifera]

 Score =  367 bits (943), Expect = 1e-99,   Method: Compositional matrix adjust.
 Identities = 194/217 (89%), Positives = 206/217 (94%), Gaps = 3/217 (1%)

Query: 1   EEDSIKNLEVPCSCSGSLKYAHRKCVQRWCNEKGDVTCEICHQPYQPGYTAPPPPPQSED 60
           EEDSIKNLEVPC+CSGSLK+AHRKCVQRWCNEKGDVTCEICHQPYQPGYTAPPPP QSED
Sbjct: 77  EEDSIKNLEVPCACSGSLKFAHRKCVQRWCNEKGDVTCEICHQPYQPGYTAPPPP-QSED 135

Query: 61  TTIDISEAWTVSGAPLDLHDPRLVAMAAAERHLLDAEYDEYADTNASGAAFCRSAALILM 120
            TIDISE WT+SG PLDL+DPRL+AMAAAERH L+AEY+EYADTNASGAAFCRSAALILM
Sbjct: 136 ATIDISEGWTISGTPLDLNDPRLLAMAAAERHFLEAEYEEYADTNASGAAFCRSAALILM 195

Query: 121 ALLLLRHALTLTNSDDGEDDASTFFSLFLLRAAGFLLPCYIMAWAVSILQRRRQRQE-AA 179
           ALLLLRHAL +TN+ DG+DDAS FFSLFLLRAAGFLLPCYIMAWA+SILQRRRQRQE AA
Sbjct: 196 ALLLLRHALNITNA-DGDDDASNFFSLFLLRAAGFLLPCYIMAWAISILQRRRQRQEAAA 254

Query: 180 ALAATEVAFMIQAGQRRGLHFTIAPGPAVTPHQEPLQ 216
           ALAATEVAFM+QAGQ RGL FTIAPGPAVTPHQEPLQ
Sbjct: 255 ALAATEVAFMLQAGQHRGLQFTIAPGPAVTPHQEPLQ 291

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224109016|ref|XP_002315052.1| predicted protein [Populus trichocarpa] gi|222864092|gb|EEF01223.1| predicted protein [Populus trichocarpa]

 Score =  342 bits (878), Expect = 4e-92,   Method: Compositional matrix adjust.
 Identities = 176/215 (81%), Positives = 193/215 (89%), Gaps = 1/215 (0%)

Query: 1   EEDSIKNLEVPCSCSGSLKYAHRKCVQRWCNEKGDVTCEICHQPYQPGYTAPPPPPQSED 60
           EEDS+ NLE PC+CSGSLKYAHRKCVQ WCNEKGD+TCEICHQPYQPGYTAPP PP SED
Sbjct: 67  EEDSVSNLENPCACSGSLKYAHRKCVQHWCNEKGDITCEICHQPYQPGYTAPPRPPHSED 126

Query: 61  TTIDISEAWTVSGAPLDLHDPRLVAMAAAERHLLDAEYDEYADTNASGAAFCRSAALILM 120
           T IDI   WT+SG  LDL DPRL+A+A AERH L+AEYD+YA +NASGAAFCRS ALILM
Sbjct: 127 TGIDIGGGWTISGTQLDLRDPRLLAIAEAERHFLEAEYDDYAASNASGAAFCRSVALILM 186

Query: 121 ALLLLRHALTLTNSDDGEDDASTFFSLFLLRAAGFLLPCYIMAWAVSILQRRRQRQEAAA 180
           ALLLLRHALT T+S DGEDD S FFSLFLLRAAGFLLPCYIMAWA+SILQRRRQRQEAAA
Sbjct: 187 ALLLLRHALTATDS-DGEDDVSAFFSLFLLRAAGFLLPCYIMAWAISILQRRRQRQEAAA 245

Query: 181 LAATEVAFMIQAGQRRGLHFTIAPGPAVTPHQEPL 215
           LAAT+VAF++Q+GQ+RGL FTIAPGP VTPHQEP+
Sbjct: 246 LAATQVAFVLQSGQQRGLQFTIAPGPTVTPHQEPV 280

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255547401|ref|XP_002514758.1| membrane associated ring finger 1,8, putative [Ricinus communis] gi|223546362|gb|EEF47864.1| membrane associated ring finger 1,8, putative [Ricinus communis]

 Score =  340 bits (873), Expect = 2e-91,   Method: Compositional matrix adjust.
 Identities = 181/222 (81%), Positives = 198/222 (89%), Gaps = 9/222 (4%)

Query: 1   EEDSIKNLEVPCSCSGSLKYAHRKCVQRWCNEKGDVTCEICHQPYQPGYTAPPPPPQSED 60
           EEDSI NLE PC+CSGSLK+AHRKCVQRWCNEKGD+TCEICHQPYQP YTA PP P  ED
Sbjct: 74  EEDSINNLEAPCACSGSLKFAHRKCVQRWCNEKGDITCEICHQPYQPNYTASPPLPL-ED 132

Query: 61  TTIDISEAWTVSGAPLDLHDPRLVAMAAAERHLLDAEYDEYADTNASGAAFCRSAALILM 120
           T IDISE WT++G PLDLHDPR++AMAAAERH L+AEYDEYAD++ASGAAFCRSAALILM
Sbjct: 133 TAIDISEGWTIAGTPLDLHDPRILAMAAAERHFLEAEYDEYADSSASGAAFCRSAALILM 192

Query: 121 ALLLLRHALTLTNSDDGEDDASTFFSLFLLRAAGFLLPCYIMAWAVSILQRRRQRQEAAA 180
           ALLLLRHA++LT   D ++DASTFFSLFL+RAAGFLLPCYIMAWA+SILQRRRQRQEAAA
Sbjct: 193 ALLLLRHAMSLTG--DSDEDASTFFSLFLIRAAGFLLPCYIMAWAISILQRRRQRQEAAA 250

Query: 181 LAATEVAFMIQAGQRRGLHFTIAPGPAVTPH------QEPLQ 216
           LAATEVAFM+QAGQRRGL FTIAPG AV PH      QEPLQ
Sbjct: 251 LAATEVAFMLQAGQRRGLQFTIAPGLAVNPHQAATPQQEPLQ 292

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255562860|ref|XP_002522435.1| membrane associated ring finger 1,8, putative [Ricinus communis] gi|223538320|gb|EEF39927.1| membrane associated ring finger 1,8, putative [Ricinus communis]

 Score =  340 bits (872), Expect = 2e-91,   Method: Compositional matrix adjust.
 Identities = 175/215 (81%), Positives = 195/215 (90%), Gaps = 1/215 (0%)

Query: 1   EEDSIKNLEVPCSCSGSLKYAHRKCVQRWCNEKGDVTCEICHQPYQPGYTAPPPPPQSED 60
           EEDS+ NLE PC+CSGSLKYAHRKCVQ WCNEKGD+TCEICH+PYQPGYTAP  PPQ+ED
Sbjct: 70  EEDSVTNLETPCACSGSLKYAHRKCVQHWCNEKGDITCEICHKPYQPGYTAPLRPPQAED 129

Query: 61  TTIDISEAWTVSGAPLDLHDPRLVAMAAAERHLLDAEYDEYADTNASGAAFCRSAALILM 120
           T IDI   WT+SG PLDL DPRL+A+A AERH L+AEYDEYA +NASGAAFCRSAALILM
Sbjct: 130 TAIDIGGGWTISGTPLDLRDPRLLAIAEAERHFLEAEYDEYAASNASGAAFCRSAALILM 189

Query: 121 ALLLLRHALTLTNSDDGEDDASTFFSLFLLRAAGFLLPCYIMAWAVSILQRRRQRQEAAA 180
           ALLLLRHALT+T++ DG+DD STFFSLFLLRAAGFLLPCYIMAWA+SILQRRRQRQEAAA
Sbjct: 190 ALLLLRHALTVTDA-DGDDDVSTFFSLFLLRAAGFLLPCYIMAWAISILQRRRQRQEAAA 248

Query: 181 LAATEVAFMIQAGQRRGLHFTIAPGPAVTPHQEPL 215
           LAAT+VAF++Q+GQ RGLHFTIA GP VT HQEP+
Sbjct: 249 LAATQVAFVLQSGQHRGLHFTIASGPQVTAHQEPV 283

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449439274|ref|XP_004137411.1| PREDICTED: uncharacterized protein LOC101217964 [Cucumis sativus] gi|449533224|ref|XP_004173576.1| PREDICTED: uncharacterized LOC101217964 [Cucumis sativus]

 Score =  334 bits (856), Expect = 1e-89,   Method: Compositional matrix adjust.
 Identities = 181/216 (83%), Positives = 194/216 (89%), Gaps = 1/216 (0%)

Query: 1   EEDSIKNLEVPCSCSGSLKYAHRKCVQRWCNEKGDVTCEICHQPYQPGYTAPPPPPQSED 60
           EEDSIKNLEVPC+CSGSLKYAHRKCVQRWCNEKGD+TCEICHQ YQPGYT P PPP+SED
Sbjct: 73  EEDSIKNLEVPCACSGSLKYAHRKCVQRWCNEKGDITCEICHQNYQPGYTLPVPPPRSED 132

Query: 61  TTIDISEAWTVSGAPLDLHDPRLVAMAAAERHLLDAEYDEYADTNASGAAFCRSAALILM 120
            TID+SE W VS   LDL+DPRL+AMAAAERH L+AEYDEYAD +A+G AFCRSAALIL+
Sbjct: 133 ATIDVSEGWAVSETALDLNDPRLLAMAAAERHFLEAEYDEYADASANGTAFCRSAALILL 192

Query: 121 ALLLLRHALTLTNSDDGEDDASTFFSLFLLRAAGFLLPCYIMAWAVSILQRRRQRQEAAA 180
           ALLLLRHAL LTN  DGEDDA TFFSL LLRAAGFLLPCYIMAWA+SILQRRRQRQEAAA
Sbjct: 193 ALLLLRHALYLTNG-DGEDDAYTFFSLLLLRAAGFLLPCYIMAWAISILQRRRQRQEAAA 251

Query: 181 LAATEVAFMIQAGQRRGLHFTIAPGPAVTPHQEPLQ 216
           LAATEVAFM+QA Q + L FTIAPGP VTPHQEPLQ
Sbjct: 252 LAATEVAFMLQAAQGQSLQFTIAPGPVVTPHQEPLQ 287

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224101351|ref|XP_002312245.1| predicted protein [Populus trichocarpa] gi|222852065|gb|EEE89612.1| predicted protein [Populus trichocarpa]

 Score =  327 bits (837), Expect = 3e-87,   Method: Compositional matrix adjust.
 Identities = 176/215 (81%), Positives = 193/215 (89%), Gaps = 1/215 (0%)

Query: 1   EEDSIKNLEVPCSCSGSLKYAHRKCVQRWCNEKGDVTCEICHQPYQPGYTAPPPPPQSED 60
           EEDSI NLE PC+CSGSLKYAHRKCVQ WCNEKGD+TCEICHQPYQP YTAPP PP SED
Sbjct: 67  EEDSISNLETPCACSGSLKYAHRKCVQHWCNEKGDITCEICHQPYQPDYTAPPHPPHSED 126

Query: 61  TTIDISEAWTVSGAPLDLHDPRLVAMAAAERHLLDAEYDEYADTNASGAAFCRSAALILM 120
           T IDI   WT+SG  LDL DPRL+A+A AERH L+AEYD+YA +NASGAAFCRS ALILM
Sbjct: 127 TAIDIGGGWTISGTQLDLRDPRLLAIAEAERHFLEAEYDDYATSNASGAAFCRSVALILM 186

Query: 121 ALLLLRHALTLTNSDDGEDDASTFFSLFLLRAAGFLLPCYIMAWAVSILQRRRQRQEAAA 180
           ALLLLRHALTLT+S D +DD STFFSLFLLRAAGFLLPCYIMAWA+SILQRRRQRQEAAA
Sbjct: 187 ALLLLRHALTLTDS-DADDDVSTFFSLFLLRAAGFLLPCYIMAWAISILQRRRQRQEAAA 245

Query: 181 LAATEVAFMIQAGQRRGLHFTIAPGPAVTPHQEPL 215
           LAAT+VAF++Q+GQ+RGL FTIAPGP VTPHQEP+
Sbjct: 246 LAATQVAFVLQSGQQRGLQFTIAPGPTVTPHQEPV 280

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356498276|ref|XP_003517979.1| PREDICTED: uncharacterized protein LOC100812998 [Glycine max]

 Score =  325 bits (833), Expect = 7e-87,   Method: Compositional matrix adjust.
 Identities = 168/213 (78%), Positives = 189/213 (88%), Gaps = 1/213 (0%)

Query: 1   EEDSIKNLEVPCSCSGSLKYAHRKCVQRWCNEKGDVTCEICHQPYQPGYTAPPPPPQSED 60
           EED + NLE PC+CSGSLKYAHRKCVQ WC+EKGD+TCEICHQPYQPGYTAPPP P  E+
Sbjct: 73  EEDGVSNLETPCACSGSLKYAHRKCVQHWCDEKGDITCEICHQPYQPGYTAPPPRPNPEE 132

Query: 61  TTIDISEAWTVSGAPLDLHDPRLVAMAAAERHLLDAEYDEYADTNASGAAFCRSAALILM 120
           TTIDI   WT+SG PLDL DPRL+A+A AER  LDAEYDEYA +NASGAAFCRSAALILM
Sbjct: 133 TTIDIGGGWTISGTPLDLRDPRLLAIAEAERQFLDAEYDEYAASNASGAAFCRSAALILM 192

Query: 121 ALLLLRHALTLTNSDDGEDDASTFFSLFLLRAAGFLLPCYIMAWAVSILQRRRQRQEAAA 180
           ALLLLRHAL++++ D+ +DD S+FFSLFLLRAAGFLLPCYIMAWA+SILQRRRQRQEAAA
Sbjct: 193 ALLLLRHALSVSDGDNSDDDPSSFFSLFLLRAAGFLLPCYIMAWAISILQRRRQRQEAAA 252

Query: 181 LAATEVAFMIQAGQRRGLHFTIAPGPAVTPHQE 213
           LAAT+VAF++Q+GQRRGL F IAPGP  T HQE
Sbjct: 253 LAATQVAFVLQSGQRRGLQFAIAPGPP-TLHQE 284

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356499805|ref|XP_003518727.1| PREDICTED: uncharacterized protein LOC100779674 [Glycine max]

 Score =  324 bits (831), Expect = 1e-86,   Method: Compositional matrix adjust.
 Identities = 164/213 (76%), Positives = 186/213 (87%)

Query: 1   EEDSIKNLEVPCSCSGSLKYAHRKCVQRWCNEKGDVTCEICHQPYQPGYTAPPPPPQSED 60
           EED + NLE PC+CSGSLKYAHRKCVQ WC+EKGD+TCEICHQPYQPGYTAPPP P  E+
Sbjct: 76  EEDGVSNLETPCACSGSLKYAHRKCVQHWCDEKGDITCEICHQPYQPGYTAPPPRPNPEE 135

Query: 61  TTIDISEAWTVSGAPLDLHDPRLVAMAAAERHLLDAEYDEYADTNASGAAFCRSAALILM 120
           TTIDI   WT+SG PLDL DPRL+A+A AER  LDAEYDEYA +NASGAAFCRSAALILM
Sbjct: 136 TTIDIGGGWTISGTPLDLRDPRLLAIAEAERQFLDAEYDEYAASNASGAAFCRSAALILM 195

Query: 121 ALLLLRHALTLTNSDDGEDDASTFFSLFLLRAAGFLLPCYIMAWAVSILQRRRQRQEAAA 180
           ALLLLRHAL++++ D+ +DD S FFSLFLLRAAGFLLPCYIMAWA+SILQRRRQRQEAAA
Sbjct: 196 ALLLLRHALSVSDGDNSDDDPSNFFSLFLLRAAGFLLPCYIMAWAISILQRRRQRQEAAA 255

Query: 181 LAATEVAFMIQAGQRRGLHFTIAPGPAVTPHQE 213
           LAAT+VAF++Q+GQRRGL F IAPG    P ++
Sbjct: 256 LAATQVAFVLQSGQRRGLQFAIAPGSPTVPQEQ 288

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356577396|ref|XP_003556812.1| PREDICTED: uncharacterized protein LOC100817542 [Glycine max]

 Score =  318 bits (815), Expect = 9e-85,   Method: Compositional matrix adjust.
 Identities = 166/214 (77%), Positives = 188/214 (87%), Gaps = 2/214 (0%)

Query: 1   EEDSIKNLEVPCSCSGSLKYAHRKCVQRWCNEKGDVTCEICHQPYQPGYTAPPPPPQSED 60
           EEDS+  LE PCSCSGSLKYAHRKCVQRWCNEKGD+TCEICH+ Y+PGYTAPPP PQ E+
Sbjct: 71  EEDSVSGLETPCSCSGSLKYAHRKCVQRWCNEKGDITCEICHKSYEPGYTAPPPRPQPEE 130

Query: 61  TTIDISEAWTVSGAPLDLHDPRLVAMAAAERHLLDAEYDEYADTNASGAAFCRSAALILM 120
           TT+DI   WT+SG PLDL DPRL+A+A AER  L+AEYD YA ++ASGAAFCRS ALILM
Sbjct: 131 TTLDIGGGWTISGTPLDLRDPRLLAIAEAERQFLEAEYDGYAASHASGAAFCRSVALILM 190

Query: 121 ALLLLRHALTLTNSDDGEDDASTFFSLFLLRAAGFLLPCYIMAWAVSILQRRRQRQEAAA 180
           ALLLLRHAL++T+S D EDD STFFSLFLLRAAGFLLPCYIMAWA+SILQRRRQRQEAAA
Sbjct: 191 ALLLLRHALSVTDS-DAEDDPSTFFSLFLLRAAGFLLPCYIMAWAISILQRRRQRQEAAA 249

Query: 181 LAATEVAFMIQAGQRRGLHFTIAPG-PAVTPHQE 213
           LAAT+VAF++Q+GQRRGL F IAPG P +  HQ+
Sbjct: 250 LAATQVAFVLQSGQRRGLQFAIAPGPPTMNTHQQ 283

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356519854|ref|XP_003528584.1| PREDICTED: uncharacterized protein LOC100814390 [Glycine max]

 Score =  311 bits (798), Expect = 1e-82,   Method: Compositional matrix adjust.
 Identities = 163/216 (75%), Positives = 184/216 (85%), Gaps = 1/216 (0%)

Query: 1   EEDSIKNLEVPCSCSGSLKYAHRKCVQRWCNEKGDVTCEICHQPYQPGYTAPPPPPQSED 60
           EEDS+ +LE PCSCSGSLKYAHRKCVQRWCNEKGD+ CEICH+ Y+PGYTAPPP PQ E+
Sbjct: 72  EEDSVSDLETPCSCSGSLKYAHRKCVQRWCNEKGDIICEICHKSYEPGYTAPPPRPQPEE 131

Query: 61  TTIDISEAWTVSGAPLDLHDPRLVAMAAAERHLLDAEYDEYADTNASGAAFCRSAALILM 120
           TTIDI   WT+SG PLDL D RL+A+A AER  L+AEYD YA ++ASGAAFCRS ALILM
Sbjct: 132 TTIDIGGGWTISGMPLDLRDTRLLAIAEAERQFLEAEYDGYAASHASGAAFCRSVALILM 191

Query: 121 ALLLLRHALTLTNSDDGEDDASTFFSLFLLRAAGFLLPCYIMAWAVSILQRRRQRQEAAA 180
           ALLLLRHAL++T+S + EDD STFFSLFLLRAAGFLLPCYIMAWA+SILQRRRQRQEAAA
Sbjct: 192 ALLLLRHALSVTDS-EAEDDPSTFFSLFLLRAAGFLLPCYIMAWAISILQRRRQRQEAAA 250

Query: 181 LAATEVAFMIQAGQRRGLHFTIAPGPAVTPHQEPLQ 216
           LAAT+VAF++Q GQRRGL F I PGP      +P Q
Sbjct: 251 LAATQVAFVLQTGQRRGLQFAIGPGPPTMNTHQPEQ 286

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	216
TAIR|locus:2154109	307	AT5G62460 [Arabidopsis thalian	0.981	0.690	0.567	3.1e-60
TAIR|locus:2079112	288	AT3G47550 [Arabidopsis thalian	0.986	0.739	0.543	1.5e-58
TAIR|locus:2012477	265	AT1G14260 [Arabidopsis thalian	0.768	0.626	0.544	4.5e-43
TAIR|locus:2056710	275	AT2G02960 [Arabidopsis thalian	0.745	0.585	0.481	4.9e-37
TAIR|locus:504956090	259	AT2G01275 [Arabidopsis thalian	0.194	0.162	0.785	6.6e-21
TAIR|locus:2144441	259	AT5G38070 [Arabidopsis thalian	0.703	0.586	0.320	5.3e-17
TAIR|locus:505006426	218	PIT1 "pitchoun 1" [Arabidopsis	0.708	0.701	0.311	1.6e-15
UNIPROTKB|B9EJE7	138	MARCH3 "Membrane-associated ri	0.194	0.304	0.380	1.5e-05
ZFIN|ZDB-GENE-070112-1712	231	zgc:158785 "zgc:158785" [Danio	0.194	0.181	0.404	2.7e-05
ZFIN|ZDB-GENE-070912-276	339	si:ch211-283p23.1 "si:ch211-28	0.148	0.094	0.468	3.4e-05

TAIR|locus:2154109 AT5G62460 [Arabidopsis thaliana (taxid:3702)]

 Score = 617 (222.3 bits), Expect = 3.1e-60, P = 3.1e-60
 Identities = 126/222 (56%), Positives = 142/222 (63%)

Query:     1 EEDSIKNLEVPCSCSGSLKYAHRKCVQRWCNEKGDVTCEICHXXXXXXXXXXXXXXXSED 60
             EEDS+KNLE PCSCSGSLKYAHRKCVQRWCNEKGD TCEICH               ++D
Sbjct:    83 EEDSVKNLESPCSCSGSLKYAHRKCVQRWCNEKGDTTCEICHKSYQPGYTAPPPPP-ADD 141

Query:    61 TTIDISEAWTVSGAPLDLHDPRLVAMAAAERHLLDAEYDEYADTNASGAAFCRSXXXXXX 120
             T IDI E W  +G  LDL+DPR++AMAAAERH  DA+YDEYAD+N+SGAAFCRS      
Sbjct:   142 TIIDIGEDWG-NGVHLDLNDPRILAMAAAERHFFDADYDEYADSNSSGAAFCRSAALILM 200

Query:   121 XXXXXXXXXXXTN--SDDGEDDASTFFSLFLLRAAGFLLPCYIMAWAVSIXXXXXXXXXX 178
                        TN  SDD EDD S FF LF+LRAAGFLLPCYIMAWA+SI          
Sbjct:   201 ALLLLRHALNLTNNNSDDEEDDPSAFFFLFMLRAAGFLLPCYIMAWAISILQRRRQRQEA 260

Query:   179 XXXXXTEVAFMIQAG-----QRRG-LHFTIAPGPAVTPHQEP 214
                   EVAFM+ +G     QRRG LHF + P     PH +P
Sbjct:   261 AALAAAEVAFMLHSGGGGGGQRRGGLHFAVPPELISNPHHQP 302

GO:0005737 "cytoplasm" evidence=ISM

GO:0008270 "zinc ion binding" evidence=IEA;ISS

TAIR|locus:2079112 AT3G47550 [Arabidopsis thaliana (taxid:3702)]

 Score = 601 (216.6 bits), Expect = 1.5e-58, P = 1.5e-58
 Identities = 118/217 (54%), Positives = 137/217 (63%)

Query:     1 EEDSIKNLEVPCSCSGSLKYAHRKCVQRWCNEKGDVTCEICHXXXXXXXXXXXXXXXSED 60
             EEDS KNLE PC+C+GSLKYAHRKCVQRWCNEKGD+TCEICH                E 
Sbjct:    74 EEDSTKNLEAPCACNGSLKYAHRKCVQRWCNEKGDITCEICHQPYQHGYTAPPPPPPDE- 132

Query:    61 TTIDISEAWTVSGAPLDLHDPRLVAMAAAERHLLDAEYDEYADTNASGAAFCRSXXXXXX 120
             T I I + W  +G PLDL DPR++AMAAAERH L+A+YDEY++ N+SGAAFCRS      
Sbjct:   133 TIIHIGDDWE-NGVPLDLTDPRILAMAAAERHFLEADYDEYSENNSSGAAFCRSAALILM 191

Query:   121 XXXXXXXXXXXTNSDDGEDDASTFFSLFLLRAAGFLLPCYIMAWAVSIXXXXXXXXXXXX 180
                        T + D EDD + FFSLFLLRAAGFLLPCYIMAWA+ I            
Sbjct:   192 ALLLLRDALNLTTNPDDEDDPTAFFSLFLLRAAGFLLPCYIMAWAIGILQRRRQRQEAAA 251

Query:   181 XXXTEVAFMIQAG--QRRGLHFTIAPGPAVTPHQEPL 215
                 EV FMI  G  QRRGLHF +AP P ++    P+
Sbjct:   252 LAAAEVTFMIHGGGPQRRGLHFAVAPQPPISNVPTPV 288

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0008270 "zinc ion binding" evidence=IEA;ISS

GO:0005737 "cytoplasm" evidence=IDA

GO:0006623 "protein targeting to vacuole" evidence=RCA

GO:0016192 "vesicle-mediated transport" evidence=RCA

TAIR|locus:2012477 AT1G14260 [Arabidopsis thaliana (taxid:3702)]

 Score = 455 (165.2 bits), Expect = 4.5e-43, P = 4.5e-43
 Identities = 92/169 (54%), Positives = 110/169 (65%)

Query:     1 EEDSIKNLEVPCSCSGSLKYAHRKCVQRWCNEKGDVTCEICHXXXXXXXXXXXXXXXSED 60
             +E  IKNLE PC+C+GSLKYAHRKCVQRWCNEKG+  CEICH               SE+
Sbjct:    62 DECDIKNLESPCACNGSLKYAHRKCVQRWCNEKGNTICEICHQPYQAGYTSPPPPPQSEE 121

Query:    61 TTIDISEAWTVSGAPLDLHDPRLVAMAAAERHLLDAEYDEYADTNASGAAFCRSXXXXXX 120
             TTIDI   W +SG  LDL DPRL+A+A AER +L++EYD+Y  ++ SGAAF RS      
Sbjct:   122 TTIDIGGGWRISG--LDLDDPRLLAIAEAERQILESEYDDYTASDTSGAAFFRSAALILM 179

Query:   121 XXXXXXXXXXXTN-SDDGEDDASTFFSLFLLRAAGFLLPCYIMAWAVSI 168
                         + SD  +DD S+  SLFLLRAA FLLPCYIMA A+SI
Sbjct:   180 TLLLLRHALTIPDYSDSEDDDPSSILSLFLLRAASFLLPCYIMASAISI 228

GO:0005886 "plasma membrane" evidence=ISM

GO:0008270 "zinc ion binding" evidence=IEA;ISS

GO:0004842 "ubiquitin-protein ligase activity" evidence=IDA

TAIR|locus:2056710 AT2G02960 [Arabidopsis thaliana (taxid:3702)]

 Score = 398 (145.2 bits), Expect = 4.9e-37, P = 4.9e-37
 Identities = 79/164 (48%), Positives = 100/164 (60%)

Query:     1 EEDSIKNLEVPCSCSGSLKYAHRKCVQRWCNEKGDVTCEICHXXXXXXXXXXXXXXXSED 60
             +E  ++NLE PC+CSGSLKYAHRKCVQRWCNEKG++ CEICH                E+
Sbjct:    48 DESPVENLESPCACSGSLKYAHRKCVQRWCNEKGNIICEICHQPYQPGYTAPPPPLQPEE 107

Query:    61 TTIDISEAWTVSGAPLDLHDPRLVAMAAAERHLLDAEYDEYADTNASGAAFCRSXXXXXX 120
             TTIDI   WT+SG  LD+HDPRL+A+A AER  L++EY EY  ++ASGAAFCRS      
Sbjct:   108 TTIDIGGGWTISG--LDVHDPRLLAIAEAERRYLESEYVEYTASSASGAAFCRSAALILM 165

Query:   121 XXXXXXXXXXXTNSDDGE-DDASTFFSLFLLRAAGFLLPCYIMA 163
                        T+  DGE DD S+  S+  L+   F    Y ++
Sbjct:   166 ALLLLRHALTITDDTDGEEDDPSSILSVSSLKLLPFFFFFYFLS 209

GO:0005634 "nucleus" evidence=ISM

GO:0008270 "zinc ion binding" evidence=IEA;ISS

TAIR|locus:504956090 AT2G01275 [Arabidopsis thaliana (taxid:3702)]

 Score = 207 (77.9 bits), Expect = 6.6e-21, Sum P(2) = 6.6e-21
 Identities = 33/42 (78%), Positives = 37/42 (88%)

Query:     1 EEDSIKNLEVPCSCSGSLKYAHRKCVQRWCNEKGDVTCEICH 42
             +ED   N+E PCSCSGS+KYAHR+CVQRWCNEKGD TCEICH
Sbjct:    64 DEDLDSNMETPCSCSGSVKYAHRRCVQRWCNEKGDTTCEICH 105

GO:0008270 "zinc ion binding" evidence=IEA;ISS

TAIR|locus:2144441 AT5G38070 [Arabidopsis thaliana (taxid:3702)]

 Score = 209 (78.6 bits), Expect = 5.3e-17, P = 5.3e-17
 Identities = 52/162 (32%), Positives = 70/162 (43%)

Query:     1 EEDSIKNLEVPCSCSGSLKYAHRKCVQRWCNEKGDVTCEICHXXXXXXXXXXXXXXXSED 60
             +ED   N++ PCSCSG+LK+AH  CVQRWCNEKGD  CEIC                   
Sbjct:    59 DEDEDTNMDTPCSCSGTLKFAHHNCVQRWCNEKGDTVCEICRQQYKPGYTAPRQLFHYTG 118

Query:    61 TTIDISEAWTVSGAPLDLHDPRLVAMAAAERHLLDAEYDEYADTNASGAAFCRSXXXXXX 120
              +++    W + G  LDL +P  +    A     D ++D Y+  + +    CR       
Sbjct:   119 ISMNFGSDWGIEG--LDLRNPYFLTWGDA-----DDDHDLYSFHSPTSLICCRLIALLFV 171

Query:   121 XXXXXXXXXXXTNSDDGEDDAS-TFFSLFLLRAAGFLLPCYI 161
                             G DD S T   L L+R  G LL  Y+
Sbjct:   172 LLLFLRHSLPVLLG--GVDDFSITLLMLPLVRTLGILLIAYV 211

GO:0005737 "cytoplasm" evidence=ISM

GO:0008270 "zinc ion binding" evidence=IEA;ISS

GO:0004842 "ubiquitin-protein ligase activity" evidence=IDA

TAIR|locus:505006426 PIT1 "pitchoun 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 195 (73.7 bits), Expect = 1.6e-15, P = 1.6e-15
 Identities = 52/167 (31%), Positives = 78/167 (46%)

Query:     1 EEDSIKNLEVPCSCSGSLKYAHRKCVQRWCNEKGDVTCEICHXXXXXXXXXXXXXXXSED 60
             EE+     EVPC+CSG++K+AHR C+QRWCNEKG+ TCEIC                 + 
Sbjct:    25 EEEEESFFEVPCACSGTVKFAHRNCIQRWCNEKGNTTCEIC----LQVYKDGYTAVLKQS 80

Query:    61 TTIDISEAWTVSGAPLDLHDPRLVAMAAAERHLLDAEYDEYADTNASGAAFCRSXXXXXX 120
               I+      V+G        RLV++A ++     ++ +  AD    GA+FCRS      
Sbjct:    81 KLIEQEVTIRVNGRRRR-RSRRLVSIAESDI----SQCNSVADR---GASFCRSLTFTLS 132

Query:   121 XXXXXXXXXXXTNSDDGEDDASTFFSLFLLRAAGFLLPCYIMAWAVS 167
                              E+   + F++  L+A G LLP +I+   +S
Sbjct:   133 VFLLMKHTFDVIYGT--EEYPFSVFTVLTLKAIGILLPMFIIIRTIS 177

GO:0005737 "cytoplasm" evidence=ISM

GO:0008270 "zinc ion binding" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=IDA

UNIPROTKB|B9EJE7 MARCH3 "Membrane-associated ring finger (C3HC4) 3" [Homo sapiens (taxid:9606)]

 Score = 101 (40.6 bits), Expect = 1.5e-05, P = 1.5e-05
 Identities = 16/42 (38%), Positives = 24/42 (57%)

Query:     1 EEDSIKNLEVPCSCSGSLKYAHRKCVQRWCNEKGDVTCEICH 42
             E  S ++L  PC C+G+L   HR C++ W +      CE+CH
Sbjct:    76 EGSSQEDLLSPCECTGTLGTIHRSCLEHWLSSSNTSYCELCH 117

GO:0008270 "zinc ion binding" evidence=IEA

ZFIN|ZDB-GENE-070112-1712 zgc:158785 "zgc:158785" [Danio rerio (taxid:7955)]

 Score = 113 (44.8 bits), Expect = 2.7e-05, P = 2.7e-05
 Identities = 17/42 (40%), Positives = 26/42 (61%)

Query:     1 EEDSIKNLEVPCSCSGSLKYAHRKCVQRWCNEKGDVTCEICH 42
             E+ +  +L  PC C+GSL   HR C+++W    G  +CE+CH
Sbjct:    55 EDSAAGDLLSPCECAGSLAMVHRVCLEQWLTASGTSSCELCH 96

GO:0008270 "zinc ion binding" evidence=IEA

ZFIN|ZDB-GENE-070912-276 si:ch211-283p23.1 "si:ch211-283p23.1" [Danio rerio (taxid:7955)]

 Score = 115 (45.5 bits), Expect = 3.4e-05, P = 3.4e-05
 Identities = 15/32 (46%), Positives = 27/32 (84%)

Query:    11 PCSCSGSLKYAHRKCVQRWCNEKGDVTCEICH 42
             PC C+GS+++AH++C+ +W +EKG  +CE+C+
Sbjct:   126 PCRCAGSVRHAHQQCLLKWISEKGSWSCELCN 157

GO:0008270 "zinc ion binding" evidence=IEA

GO:0008150 "biological_process" evidence=ND

GO:0005575 "cellular_component" evidence=ND

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	6.3.2	LOW CONFIDENCE prediction!

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Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: estExt_Genewise1_v1.C_LG_X1136 hypothetical protein (280 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

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Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	216
pfam12428	118	pfam12428, DUF3675, Protein of unknown function (D	4e-60
smart00744	49	smart00744, RINGv, The RING-variant domain is a C4	2e-16
pfam12906	47	pfam12906, RINGv, RING-variant domain	3e-13
COG5183	1175	COG5183, SSM4, Protein involved in mRNA turnover a	3e-10
PHA02825	162	PHA02825, PHA02825, LAP/PHD finger-like protein; P	5e-05
PHA02862	156	PHA02862, PHA02862, 5L protein; Provisional	5e-04

>gnl|CDD|221572 pfam12428, DUF3675, Protein of unknown function (DUF3675)

 Score =  184 bits (468), Expect = 4e-60
 Identities = 72/121 (59%), Positives = 82/121 (67%), Gaps = 3/121 (2%)

Query: 47  PGYTAPPPPPQSEDTTIDISEAWTVSGAPLDLHDPRLVAMAAAERHLLDAEYDEYADTNA 106
           PGYTAPP   Q  +T I I   W +S    DL DPRL+AMA AER  L+AEYDEYA  N 
Sbjct: 1   PGYTAPPKLFQPGETAITIRGNWEISR--RDLRDPRLLAMAEAERQFLEAEYDEYAAANP 58

Query: 107 SGAAFCRSAALILMALLLLRHALTLTNSDDGEDDASTFFSLFLLRAAGFLLPCYIMAWAV 166
           SGAA CRS ALI M LLLLRHAL +      +D + T F+L LLRAAG LLPCYIMA A+
Sbjct: 59  SGAACCRSVALIFMVLLLLRHALPVVLGGA-DDYSFTLFTLLLLRAAGILLPCYIMARAI 117

Query: 167 S 167
           +
Sbjct: 118 T 118

This domain family is found in eukaryotes, and is approximately 120 amino acids in length. The family is found in association with pfam00097. There are two completely conserved residues (R and L) that may be functionally important. Length = 118

>gnl|CDD|128983 smart00744, RINGv, The RING-variant domain is a C4HC3 zinc-finger like motif found in a number of cellular and viral proteins

 Score = 69.6 bits (171), Expect = 2e-16
 Identities = 23/42 (54%), Positives = 28/42 (66%)

Query: 1  EEDSIKNLEVPCSCSGSLKYAHRKCVQRWCNEKGDVTCEICH 42
          E D    L  PC C GSLKY H++C++RW NE G+ TCEIC 
Sbjct: 8  EGDEGDPLVSPCRCKGSLKYVHQECLERWINESGNKTCEICK 49

Some of these proteins have been shown both in vivo and in vitro to have ubiquitin E3 ligase activity. The RING-variant domain is reminiscent of both the RING and the PHD domains and may represent an evolutionary intermediate. To describe this domain the term PHD/LAP domain has been used in the past. Extended description: The RING-variant (RINGv) domain contains a C4HC3 zinc-finger-like motif similar to the PHD domain, while some of the spacing between the Cys/His residues follow a pattern somewhat closer to that found in the RING domain. The RINGv domain, similar to the RING, PHD and LIM domains, is thought to bind two zinc ions co-ordinated by the highly conserved Cys and His residues. RING variant domain: C-x (2) -C-x(10-45)-C-x (1) -C-x (7) -H-x(2)-C-x(11-25)-C-x(2)-C As opposed to a PHD: C-x(1-2) -C-x (7-13)-C-x(2-4)-C-x(4-5)-H-x(2)-C-x(10-21)-C-x(2)-C Classical RING domain: C-x (2) -C-x (9-39)-C-x(1-3)-H-x(2-3)-C-x(2)-C-x(4-48) -C-x(2)-C. Length = 49

>gnl|CDD|221845 pfam12906, RINGv, RING-variant domain

 Score = 61.3 bits (149), Expect = 3e-13
 Identities = 20/41 (48%), Positives = 26/41 (63%)

Query: 1  EEDSIKNLEVPCSCSGSLKYAHRKCVQRWCNEKGDVTCEIC 41
           E+  + L  PC C GSLKY H+ C++RW    G+ TCEIC
Sbjct: 7  GEEEDEPLIRPCRCRGSLKYVHQSCLERWLKTSGNTTCEIC 47

Length = 47

>gnl|CDD|227510 COG5183, SSM4, Protein involved in mRNA turnover and stability [RNA processing and modification]

 Score = 58.8 bits (142), Expect = 3e-10
 Identities = 22/56 (39%), Positives = 28/56 (50%)

Query: 11 PCSCSGSLKYAHRKCVQRWCNEKGDVTCEICHQPYQPGYTAPPPPPQSEDTTIDIS 66
          PC CSGS+KY HR+C+  W    G   C+ICH  Y+         PQ    +I I 
Sbjct: 31 PCKCSGSIKYIHRECLMEWMECSGTKKCDICHYEYKFKDIYKEDMPQIIPFSILIR 86

Length = 1175

>gnl|CDD|177491 PHA02825, PHA02825, LAP/PHD finger-like protein; Provisional

 Score = 41.7 bits (98), Expect = 5e-05
 Identities = 12/34 (35%), Positives = 21/34 (61%)

Query: 12 CSCSGSLKYAHRKCVQRWCNEKGDVTCEICHQPY 45
          C+C    K  H++C++ W N   + +C+IC+ PY
Sbjct: 25 CNCKNENKIVHKECLEEWINTSKNKSCKICNGPY 58

Length = 162

>gnl|CDD|165197 PHA02862, PHA02862, 5L protein; Provisional

 Score = 38.8 bits (90), Expect = 5e-04
 Identities = 12/34 (35%), Positives = 15/34 (44%)

Query: 12 CSCSGSLKYAHRKCVQRWCNEKGDVTCEICHQPY 45
          C C+   K  H KC+Q W N      C +C   Y
Sbjct: 19 CGCNEEYKVVHIKCMQLWINYSKKKECNLCKTKY 52

Length = 156

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	216
PF12428	118	DUF3675: Protein of unknown function (DUF3675) ; I	100.0
KOG1609	323	consensus Protein involved in mRNA turnover and st	99.73
PHA02825	162	LAP/PHD finger-like protein; Provisional	99.63
smart00744	49	RINGv The RING-variant domain is a C4HC3 zinc-fing	99.54
PF12906	47	RINGv: RING-variant domain; PDB: 2D8S_A 1VYX_A.	99.46
PHA02862	156	5L protein; Provisional	99.43
COG5183	1175	SSM4 Protein involved in mRNA turnover and stabili	99.37
KOG3053	293	consensus Uncharacterized conserved protein [Funct	99.2
PF13639	44	zf-RING_2: Ring finger domain; PDB: 2KIZ_A 4EPO_C	94.17
PF12861	85	zf-Apc11: Anaphase-promoting complex subunit 11 RI	92.95
PF12678	73	zf-rbx1: RING-H2 zinc finger; InterPro: IPR024766	89.21
cd00162	45	RING RING-finger (Really Interesting New Gene) dom	88.63
KOG1493	84	consensus Anaphase-promoting complex (APC), subuni	86.41
smart00184	39	RING Ring finger. E3 ubiquitin-protein ligase acti	85.3
PF13920	50	zf-C3HC4_3: Zinc finger, C3HC4 type (RING finger);	81.68
COG5243	491	HRD1 HRD ubiquitin ligase complex, ER membrane com	80.68

>PF12428 DUF3675: Protein of unknown function (DUF3675) ; InterPro: IPR022143 This domain family is found in eukaryotes, and is approximately 120 amino acids in length

Probab=100.00  E-value=1.4e-46  Score=300.34  Aligned_cols=118  Identities=63%  Similarity=1.005  Sum_probs=114.0

Q ss_pred             cccCCCCCCCCCCCcccccccceeeeCCCCCCCChHHHHHHHHHHhhhhcccccccccCCCCcchHHHHHHHHHHHHHHH
Q 039690           47 PGYTAPPPPPQSEDTTIDISEAWTVSGAPLDLHDPRLVAMAAAERHLLDAEYDEYADTNASGAAFCRSAALILMALLLLR  126 (216)
Q Consensus        47 ~~y~~p~p~~~~~~~~i~~~~~w~i~~~~~d~~~pr~i~~~~~e~~~~~~d~~ey~~~~~~~~~~CRsvaii~m~LLlLR  126 (216)
                      ++||+|||++++.+++|+|+++|++++  +|++|||+++|+++|++|+|+||+||+.+|++|++||||+|||||+|||||
T Consensus         1 PgYTaPp~~~~~~~~~i~ir~~we~~~--~d~~~~~~~a~~~ae~~~l~~~y~e~~~~~~~~a~~CRsvAli~m~LLllR   78 (118)
T PF12428_consen    1 PGYTAPPKKFQPGETAIDIRGNWEISR--RDLRDPRFLAMAAAERQFLESEYDEYAASNTRGAACCRSVALIFMVLLLLR   78 (118)
T ss_pred             CCCCCCCCCCCcCccceEecCCccccc--cCccchhhhhhhhhhhhccccccccccccCCCceeHHHHHHHHHHHHHHHH
Confidence            589999999999999999999999555  899999999999999999999999999999999999999999999999999


Q ss_pred             HHhhhccCCCCCCchHHHHHHHHHHHhhhHHHHHHHHHHHH
Q 039690          127 HALTLTNSDDGEDDASTFFSLFLLRAAGFLLPCYIMAWAVS  167 (216)
Q Consensus       127 h~l~~~~~~~~e~~~~tlftl~~lRaaGilLP~Yim~~~i~  167 (216)
                      |+++++++ |+|+|+|++||+++||++|||||||||+|+|+
T Consensus        79 hal~l~~~-~~~~~s~~lftl~~LRaaGilLP~Yim~rais  118 (118)
T PF12428_consen   79 HALALVTG-GAEDYSFTLFTLLLLRAAGILLPCYIMARAIS  118 (118)
T ss_pred             HHHHHhcC-CcccccHHHHHHHHHHHHHHHHHHHHHHhccC
Confidence            99999996 99999999999999999999999999999974

The family is found in association with PF00097 from PFAM. There are two completely conserved residues (R and L) that may be functionally important.

>KOG1609 consensus Protein involved in mRNA turnover and stability [RNA processing and modification]

Probab=99.73  E-value=1.3e-19  Score=158.74  Aligned_cols=185  Identities=31%  Similarity=0.296  Sum_probs=147.6

Q ss_pred             CccccccccCchhhHHHHHHHHHHHHcCCccccccCcccccccCCCCCCCCCCCcccccccceeeeCCCCCCCChHHHHH
Q 039690            7 NLEVPCSCSGSLKYAHRKCVQRWCNEKGDVTCEICHQPYQPGYTAPPPPPQSEDTTIDISEAWTVSGAPLDLHDPRLVAM   86 (216)
Q Consensus         7 ~li~PC~C~GSlkyvH~~CL~~W~~~k~~~~CEICk~~y~~~y~~p~p~~~~~~~~i~~~~~w~i~~~~~d~~~pr~i~~   86 (216)
                      .++.||.|+|+++|||+.|+++|+..|++..||+|++.|.+.++.+++............+.|...+. ...+++..+.+
T Consensus        95 ~l~~pC~C~g~l~~vH~~cl~~W~~~~~~~~CeiC~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~i  173 (323)
T KOG1609|consen   95 LLISPCSCKGSLAYVHRSCLEKWFSIKGNITCEICKSFFINVGTKLKPLIVISKVRSGALSERTLSGM-ILLKVALLVAI  173 (323)
T ss_pred             ccccCccccCcHHHHHHHHHHhhhccccCeeeecccccceecceeecceeehhhhhhHhhhheeeehh-hhhhhhhhhee
Confidence            68999999999999999999999999999999999999999988887777665555555666766664 45667777777


Q ss_pred             HHHHHhhhhcccccccccCCCCcchHHHHH-HHHHHHHHHHHHhhhccCCC--CCCchHHHHHHHHHHHhhhHHHHHHHH
Q 039690           87 AAAERHLLDAEYDEYADTNASGAAFCRSAA-LILMALLLLRHALTLTNSDD--GEDDASTFFSLFLLRAAGFLLPCYIMA  163 (216)
Q Consensus        87 ~~~e~~~~~~d~~ey~~~~~~~~~~CRsva-ii~m~LLlLRh~l~~~~~~~--~e~~~~tlftl~~lRaaGilLP~Yim~  163 (216)
                      ......++...++++....+.++..++..+ +++.++.++++.+.......  -..+.++.+.+.++|+.+++++.++++
T Consensus       174 ~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  253 (323)
T KOG1609|consen  174 IVSVLPLLLGLLFELVLGVPSLVVESPLANPLALVALGLLGFKIWIFIILSGYIFILKSLKVKLVLIRAVIFLLLIKVVL  253 (323)
T ss_pred             eEEeehhhhhhhHHHhccccccccCCCccCchhheeecceechHHHHHHHHHHHHHHHHHHHHHhHhhhhccchhhhhhh
Confidence            666777888888888888888888888888 88888889999887766521  135667777799999999999999998


Q ss_pred             HHHHHHHHHHHHHHHHHhhhhhhhhhhhc
Q 039690          164 WAVSILQRRRQRQEAAALAATEVAFMIQA  192 (216)
Q Consensus       164 ~~i~~iQ~~r~rq~~~~~~a~~~~~~~~~  192 (216)
                      +++...|.++.+..+...+...+.+...+
T Consensus       254 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  282 (323)
T KOG1609|consen  254 AAVVILQLLLQRLVGYLLANSLTPLYIVS  282 (323)
T ss_pred             hhHHHHHHHHhcceeEEEecccceeeecc
Confidence            77777788888888765555555444444

>PHA02825 LAP/PHD finger-like protein; Provisional

Probab=99.63  E-value=1.5e-16  Score=133.23  Aligned_cols=65  Identities=28%  Similarity=0.647  Sum_probs=51.8

Q ss_pred             CCccccccccCchhhHHHHHHHHHHHHcCCccccccCcccccccCCCCCCCCCCCcccccccceeeeCCCCCCCChHHH
Q 039690            6 KNLEVPCSCSGSLKYAHRKCVQRWCNEKGDVTCEICHQPYQPGYTAPPPPPQSEDTTIDISEAWTVSGAPLDLHDPRLV   84 (216)
Q Consensus         6 ~~li~PC~C~GSlkyvH~~CL~~W~~~k~~~~CEICk~~y~~~y~~p~p~~~~~~~~i~~~~~w~i~~~~~d~~~pr~i   84 (216)
                      +++.+||+|+||+||||++||++|++++++..||+|+++|++..... |           ...|..+.  .|-+++.++
T Consensus        19 ~~~~~PC~CkGs~k~VH~sCL~rWi~~s~~~~CeiC~~~Y~i~~~~k-p-----------l~~W~~~~--~dc~~~~l~   83 (162)
T PHA02825         19 DVVTNYCNCKNENKIVHKECLEEWINTSKNKSCKICNGPYNIKKNYK-K-----------CTKWRCSF--RDCHDSAIV   83 (162)
T ss_pred             CCccCCcccCCCchHHHHHHHHHHHhcCCCCcccccCCeEEEEEecC-C-----------CccccccC--cchhhHHHH
Confidence            35779999999999999999999999999999999999999875322 1           23576555  566666544

>smart00744 RINGv The RING-variant domain is a C4HC3 zinc-finger like motif found in a number of cellular and viral proteins

Probab=99.54  E-value=4.3e-15  Score=102.01  Aligned_cols=42  Identities=55%  Similarity=1.174  Sum_probs=39.5

Q ss_pred             CcccCCCccccccccCchhhHHHHHHHHHHHHcCCccccccC
Q 039690            1 EEDSIKNLEVPCSCSGSLKYAHRKCVQRWCNEKGDVTCEICH   42 (216)
Q Consensus         1 EEd~~~~li~PC~C~GSlkyvH~~CL~~W~~~k~~~~CEICk   42 (216)
                      +++++++++.||+|+||++|||+.||++|+.++++.+||+|+
T Consensus         8 ~~~~~~~l~~PC~C~G~~~~vH~~Cl~~W~~~~~~~~C~iC~   49 (49)
T smart00744        8 EGDEGDPLVSPCRCKGSLKYVHQECLERWINESGNKTCEICK   49 (49)
T ss_pred             CCCCCCeeEeccccCCchhHHHHHHHHHHHHHcCCCcCCCCC
Confidence            367888999999999999999999999999999999999996

Some of these proteins have been shown both in vivo and in vitro to have ubiquitin E3 ligase activity. The RING-variant domain is reminiscent of both the RING and the PHD domains and may represent an evolutionary intermediate. To describe this domain the term PHD/LAP domain has been used in the past. Extended description: The RING-variant (RINGv) domain contains a C4HC3 zinc-finger-like motif similar to the PHD domain, while some of the spacing between the Cys/His residues follow a pattern somewhat closer to that found in the RING domain. The RINGv domain, similar to the RING, PHD and LIM domains, is thought to bind two zinc ions co-ordinated by the highly conserved Cys and His residues. RING variant domain: C-x (2) -C-x(10-45)-C-x (1) -C-x (7) -H-x(2)-C-x(11-25)-C-x(2)-C As opposed to a PHD: C-x(1-2) -C-x (7-13)-C-x(2-4)-C-x(4-5)-H-x(2)-C-x(10-21)-C-x(2)-C Class

>PF12906 RINGv: RING-variant domain; PDB: 2D8S_A 1VYX_A

Probab=99.46  E-value=9.2e-15  Score=99.55  Aligned_cols=39  Identities=49%  Similarity=1.178  Sum_probs=31.3

Q ss_pred             ccCCCccccccccCchhhHHHHHHHHHHHHcCCcccccc
Q 039690            3 DSIKNLEVPCSCSGSLKYAHRKCVQRWCNEKGDVTCEIC   41 (216)
Q Consensus         3 d~~~~li~PC~C~GSlkyvH~~CL~~W~~~k~~~~CEIC   41 (216)
                      +++++|++||.|+||++|||++||++|+.++++.+||+|
T Consensus         9 ~~~~~li~pC~C~Gs~~~vH~~CL~~W~~~~~~~~C~~C   47 (47)
T PF12906_consen    9 EEDEPLISPCRCKGSMKYVHRSCLERWIRESGNRKCEIC   47 (47)
T ss_dssp             SSSS-EE-SSS-SSCCGSEECCHHHHHHHHHT-SB-TTT
T ss_pred             CCCCceecccccCCCcchhHHHHHHHHHHhcCCCcCCCC
Confidence            344479999999999999999999999999999999998

>PHA02862 5L protein; Provisional

Probab=99.43  E-value=6.1e-14  Score=116.31  Aligned_cols=40  Identities=30%  Similarity=0.705  Sum_probs=38.5

Q ss_pred             cccccccCchhhHHHHHHHHHHHHcCCccccccCcccccc
Q 039690            9 EVPCSCSGSLKYAHRKCVQRWCNEKGDVTCEICHQPYQPG   48 (216)
Q Consensus         9 i~PC~C~GSlkyvH~~CL~~W~~~k~~~~CEICk~~y~~~   48 (216)
                      .+||.|+||+||||++||++|++.+++..||+|+++|.++
T Consensus        16 ~~PC~C~GS~K~VHq~CL~~WIn~S~k~~CeLCkteY~Ik   55 (156)
T PHA02862         16 NNFCGCNEEYKVVHIKCMQLWINYSKKKECNLCKTKYNIK   55 (156)
T ss_pred             cccccccCcchhHHHHHHHHHHhcCCCcCccCCCCeEEEE
Confidence            6999999999999999999999999999999999999864

>COG5183 SSM4 Protein involved in mRNA turnover and stability [RNA processing and modification]

Probab=99.37  E-value=3.3e-13  Score=134.85  Aligned_cols=59  Identities=37%  Similarity=0.737  Sum_probs=53.7

Q ss_pred             CcccCCCccccccccCchhhHHHHHHHHHHHHcCCccccccCccccc--ccCCCCCCCCCC
Q 039690            1 EEDSIKNLEVPCSCSGSLKYAHRKCVQRWCNEKGDVTCEICHQPYQP--GYTAPPPPPQSE   59 (216)
Q Consensus         1 EEd~~~~li~PC~C~GSlkyvH~~CL~~W~~~k~~~~CEICk~~y~~--~y~~p~p~~~~~   59 (216)
                      |+-+|+|+.+||+|+||+||+|++||.+|+..+++++|||||++|+.  .|...+|.-.|.
T Consensus        21 e~~~d~pLfhPCKC~GSIkYiH~eCL~eW~~~s~~~kCdiChy~~~Fk~IY~e~mP~~IPf   81 (1175)
T COG5183          21 EDIRDDPLFHPCKCSGSIKYIHRECLMEWMECSGTKKCDICHYEYKFKDIYKEDMPQIIPF   81 (1175)
T ss_pred             CCCCCCcCcccccccchhHHHHHHHHHHHHhcCCCcceeeecceeeeeeecccCCCcccce
Confidence            56689999999999999999999999999999999999999999865  588888888775

>KOG3053 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.20  E-value=6.8e-12  Score=112.38  Aligned_cols=48  Identities=33%  Similarity=0.842  Sum_probs=42.9

Q ss_pred             CccccccccCchhhHHHHHHHHHHHHc------CCccccccCcccccccCCCCC
Q 039690            7 NLEVPCSCSGSLKYAHRKCVQRWCNEK------GDVTCEICHQPYQPGYTAPPP   54 (216)
Q Consensus         7 ~li~PC~C~GSlkyvH~~CL~~W~~~k------~~~~CEICk~~y~~~y~~p~p   54 (216)
                      .+++||.|+||.||||+.||.+|+++|      .+..|.+|+++|.++|+...|
T Consensus        37 ~WV~PCrCRGt~KWVHqsCL~rWiDEK~~~n~~q~V~C~QCqTEYiiv~P~l~~   90 (293)
T KOG3053|consen   37 AWVHPCRCRGTTKWVHQSCLSRWIDEKQRGNPLQTVSCPQCQTEYIIVFPQLGP   90 (293)
T ss_pred             hhcccccccCccHHHHHHHHHHHHhHHhcCCCCceeechhhcchheeeccccCh
Confidence            489999999999999999999999998      368999999999999865443

>PF13639 zf-RING_2: Ring finger domain; PDB: 2KIZ_A 4EPO_C 1IYM_A 2EP4_A 2ECT_A 2JRJ_A 2ECN_A 2ECM_A 3NG2_A 2EA6_A

Probab=94.17  E-value=0.019  Score=37.46  Aligned_cols=22  Identities=27%  Similarity=0.979  Sum_probs=18.3

Q ss_pred             hhHHHHHHHHHHHHcCCccccccC
Q 039690           19 KYAHRKCVQRWCNEKGDVTCEICH   42 (216)
Q Consensus        19 kyvH~~CL~~W~~~k~~~~CEICk   42 (216)
                      ...|.+|+++|++.+  .+|++|+
T Consensus        23 H~fh~~Ci~~~~~~~--~~CP~CR   44 (44)
T PF13639_consen   23 HVFHRSCIKEWLKRN--NSCPVCR   44 (44)
T ss_dssp             EEEEHHHHHHHHHHS--SB-TTTH
T ss_pred             CeeCHHHHHHHHHhC--CcCCccC
Confidence            689999999999885  4999985

...

>PF12861 zf-Apc11: Anaphase-promoting complex subunit 11 RING-H2 finger

Probab=92.95  E-value=0.072  Score=40.98  Aligned_cols=30  Identities=23%  Similarity=0.726  Sum_probs=25.3

Q ss_pred             hhHHHHHHHHHHHH-cCCccccccCcccccc
Q 039690           19 KYAHRKCVQRWCNE-KGDVTCEICHQPYQPG   48 (216)
Q Consensus        19 kyvH~~CL~~W~~~-k~~~~CEICk~~y~~~   48 (216)
                      .-.|..|+.+|++. +.+..|++|+++|+.+
T Consensus        54 H~FH~hCI~kWl~~~~~~~~CPmCR~~w~~k   84 (85)
T PF12861_consen   54 HNFHMHCILKWLSTQSSKGQCPMCRQPWKFK   84 (85)
T ss_pred             cHHHHHHHHHHHccccCCCCCCCcCCeeeeC
Confidence            45899999999986 4678999999998753

>PF12678 zf-rbx1: RING-H2 zinc finger; InterPro: IPR024766 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=89.21  E-value=0.21  Score=36.54  Aligned_cols=22  Identities=27%  Similarity=0.940  Sum_probs=17.2

Q ss_pred             hhHHHHHHHHHHHHcCCccccccC
Q 039690           19 KYAHRKCVQRWCNEKGDVTCEICH   42 (216)
Q Consensus        19 kyvH~~CL~~W~~~k~~~~CEICk   42 (216)
                      ..-|..||.+|++.+.  +|++|+
T Consensus        52 H~FH~~Ci~~Wl~~~~--~CP~CR   73 (73)
T PF12678_consen   52 HIFHFHCISQWLKQNN--TCPLCR   73 (73)
T ss_dssp             EEEEHHHHHHHHTTSS--B-TTSS
T ss_pred             CCEEHHHHHHHHhcCC--cCCCCC
Confidence            4589999999996544  999995

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This domain constitutes a conserved region found in proteins that participate in diverse functions relevant to chromosome metabolism and cell cycle control [].The domain contains 8 cysteine/ histidine residues which are proposed to be the conserved residues involved in zinc binding.; PDB: 4A0C_D 4A0L_I 4A0K_B 2ECL_A 1LDK_C 3RTR_F 3DQV_Y 1U6G_B 1LDJ_B 2HYE_D ....

>cd00162 RING RING-finger (Really Interesting New Gene) domain, a specialized type of Zn-finger of 40 to 60 residues that binds two atoms of zinc; defined by the 'cross-brace' motif C-X2-C-X(9-39)-C-X(1-3)- H-X(2-3)-(N/C/H)-X2-C-X(4-48)C-X2-C; probably involved in mediating protein-protein interactions; identified in a proteins with a wide range of functions such as viral replication, signal transduction, and development; has two variants, the C3HC4-type and a C3H2C3-type (RING-H2 finger), which have different cysteine/histidine pattern; a subset of RINGs are associated with B-Boxes (C-X2-H-X7-C-X7-C-X2-C-H-X2-H)

Probab=88.63  E-value=0.42  Score=29.37  Aligned_cols=25  Identities=32%  Similarity=0.979  Sum_probs=20.8

Q ss_pred             hhHHHHHHHHHHHHcCCccccccCcc
Q 039690           19 KYAHRKCVQRWCNEKGDVTCEICHQP   44 (216)
Q Consensus        19 kyvH~~CL~~W~~~k~~~~CEICk~~   44 (216)
                      ...|..|+.+|++. +...|.+|+..
T Consensus        20 H~~c~~C~~~~~~~-~~~~Cp~C~~~   44 (45)
T cd00162          20 HVFCRSCIDKWLKS-GKNTCPLCRTP   44 (45)
T ss_pred             ChhcHHHHHHHHHh-CcCCCCCCCCc
Confidence            34799999999976 67789999875

>KOG1493 consensus Anaphase-promoting complex (APC), subunit 11 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=86.41  E-value=0.47  Score=36.30  Aligned_cols=30  Identities=30%  Similarity=0.744  Sum_probs=25.5

Q ss_pred             hhhHHHHHHHHHHHHc-CCccccccCccccc
Q 039690           18 LKYAHRKCVQRWCNEK-GDVTCEICHQPYQP   47 (216)
Q Consensus        18 lkyvH~~CL~~W~~~k-~~~~CEICk~~y~~   47 (216)
                      ....|..|+.+|++.+ ....|+.|++.|+.
T Consensus        52 ~h~fh~hCI~~wl~~~tsq~~CPmcRq~~~~   82 (84)
T KOG1493|consen   52 LHAFHAHCILKWLNTPTSQGQCPMCRQTWQF   82 (84)
T ss_pred             HHHHHHHHHHHHhcCccccccCCcchheeEe
Confidence            3458999999999866 56899999999875

>smart00184 RING Ring finger

Probab=85.30  E-value=1.3  Score=26.03  Aligned_cols=31  Identities=32%  Similarity=0.910  Sum_probs=22.3

Q ss_pred             CCCccccccccCchhhHHHHHHHHHHHHcCCcccccc
Q 039690            5 IKNLEVPCSCSGSLKYAHRKCVQRWCNEKGDVTCEIC   41 (216)
Q Consensus         5 ~~~li~PC~C~GSlkyvH~~CL~~W~~~k~~~~CEIC   41 (216)
                      .+....||.-     ..|..|+++|++ ++...|.+|
T Consensus         9 ~~~~~~~C~H-----~~c~~C~~~~~~-~~~~~CP~C   39 (39)
T smart00184        9 KDPVVLPCGH-----TFCRSCIRKWLK-SGNNTCPIC   39 (39)
T ss_pred             CCcEEecCCC-----hHHHHHHHHHHH-hCcCCCCCC
Confidence            3445666543     479999999998 566678776

E3 ubiquitin-protein ligase activity is intrinsic to the RING domain of c-Cbl and is likely to be a general function of this domain; Various RING fingers exhibit binding activity towards E2 ubiquitin-conjugating enzymes (Ubc' s)

>PF13920 zf-C3HC4_3: Zinc finger, C3HC4 type (RING finger); PDB: 2YHN_B 2YHO_G 3T6P_A 2CSY_A 2VJE_B 2VJF_B 2HDP_B 2EA5_A 2ECG_A 3EB5_A

Probab=81.68  E-value=1.1  Score=29.79  Aligned_cols=36  Identities=25%  Similarity=0.631  Sum_probs=27.3

Q ss_pred             cCCCccccccccCchhh-HHHHHHHHHHHHcCCccccccCcccc
Q 039690            4 SIKNLEVPCSCSGSLKY-AHRKCVQRWCNEKGDVTCEICHQPYQ   46 (216)
Q Consensus         4 ~~~~li~PC~C~GSlky-vH~~CL~~W~~~k~~~~CEICk~~y~   46 (216)
                      ..+....||.     .. +-..|+.+|.+  +...|.+|+++.+
T Consensus        12 ~~~~~~~pCg-----H~~~C~~C~~~~~~--~~~~CP~Cr~~i~   48 (50)
T PF13920_consen   12 PRDVVLLPCG-----HLCFCEECAERLLK--RKKKCPICRQPIE   48 (50)
T ss_dssp             BSSEEEETTC-----EEEEEHHHHHHHHH--TTSBBTTTTBB-S
T ss_pred             CCceEEeCCC-----ChHHHHHHhHHhcc--cCCCCCcCChhhc
Confidence            3445677875     23 67799999998  8899999998865

...

>COG5243 HRD1 HRD ubiquitin ligase complex, ER membrane component [Posttranslational modification, protein turnover, chaperones]

Probab=80.68  E-value=1.2  Score=42.90  Aligned_cols=33  Identities=27%  Similarity=0.729  Sum_probs=24.8

Q ss_pred             hhHHHHHHHHHHHHcCCccccccCcccccccCCCC
Q 039690           19 KYAHRKCVQRWCNEKGDVTCEICHQPYQPGYTAPP   53 (216)
Q Consensus        19 kyvH~~CL~~W~~~k~~~~CEICk~~y~~~y~~p~   53 (216)
                      +..|-.||+.|+.-  ..+|+||+.+.......|-
T Consensus       320 HilHl~CLknW~ER--qQTCPICr~p~ifd~~~~~  352 (491)
T COG5243         320 HILHLHCLKNWLER--QQTCPICRRPVIFDQSSPT  352 (491)
T ss_pred             ceeeHHHHHHHHHh--ccCCCcccCccccccCCCC
Confidence            36899999999964  5689999998655444443

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	216
2d8s_A	80	Cellular modulator of immune recognition; C-MIR, m	4e-18
1vyx_A	60	ORF K3, K3RING; zinc-binding protein, ring domain,	4e-17

>2d8s_A Cellular modulator of immune recognition; C-MIR, march8, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 80

 Score = 75.0 bits (184), Expect = 4e-18
 Identities = 17/54 (31%), Positives = 24/54 (44%)

Query: 1  EEDSIKNLEVPCSCSGSLKYAHRKCVQRWCNEKGDVTCEICHQPYQPGYTAPPP 54
          E D    L  PC C+GSL + H+ C+Q+W        CE+C   +        P
Sbjct: 24 EGDDESPLITPCHCTGSLHFVHQACLQQWIKSSDTRCCELCKYEFIMETKLSGP 77

>1vyx_A ORF K3, K3RING; zinc-binding protein, ring domain, cross-brace motif; NMR {Human herpesvirus 8} SCOP: g.44.1.3 Length = 60

 Score = 71.3 bits (175), Expect = 4e-17
 Identities = 13/45 (28%), Positives = 19/45 (42%)

Query: 2  EDSIKNLEVPCSCSGSLKYAHRKCVQRWCNEKGDVTCEICHQPYQ 46
          E+        C C+G L+  HR C+  W     +  C+IC   Y 
Sbjct: 14 EELGNERFRACGCTGELENVHRSCLSTWLTISRNTACQICGVVYN 58

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	216
1vyx_A	60	ORF K3, K3RING; zinc-binding protein, ring domain,	99.59
2d8s_A	80	Cellular modulator of immune recognition; C-MIR, m	99.45
2ct0_A	74	Non-SMC element 1 homolog; ring domain, structural	96.52
1v87_A	114	Deltex protein 2; ring-H2 domain, zinc-binding dom	95.8
2ect_A	78	Ring finger protein 126; metal binding protein, st	94.91
2kiz_A	69	E3 ubiquitin-protein ligase arkadia; ring-H2 finge	94.9
2ep4_A	74	Ring finger protein 24; zinc binding, ubiquitin, E	94.51
2ecm_A	55	Ring finger and CHY zinc finger domain- containing	94.41
2l0b_A	91	E3 ubiquitin-protein ligase praja-1; zinc finger,	94.39
2ecl_A	81	Ring-box protein 2; RNF7, ring domian, zinc-bindin	94.23
1x4j_A	75	Ring finger protein 38; structural genomics, NPPSF	93.63
1iym_A	55	EL5; ring-H2 finger, ubiquitin ligase, DNA binding	93.22
2ct2_A	88	Tripartite motif protein 32; zinc-finger protein H	93.14
2ea6_A	69	Ring finger protein 4; RNF4, RES4-26, ring domain,	92.46
3ng2_A	71	RNF4, snurf, ring finger protein 4; ring domain, E	91.85
3dpl_R	106	Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST	91.74
2xeu_A	64	Ring finger protein 4; transcription, zinc-finger,	91.51
2yur_A	74	Retinoblastoma-binding protein 6; P53-associated c	91.48
2ecw_A	85	Tripartite motif-containing protein 30; metal bind	91.32
2d8t_A	71	Dactylidin, ring finger protein 146; RNF146, ring	90.97
2ecy_A	66	TNF receptor-associated factor 3; metal binding pr	90.61
2djb_A	72	Polycomb group ring finger protein 6; PCGF6, ring	90.19
1chc_A	68	Equine herpes virus-1 ring domain; viral protein;	88.87
4a0k_B	117	E3 ubiquitin-protein ligase RBX1; ligase-DNA-bindi	88.81
2ecv_A	85	Tripartite motif-containing protein 5; metal bindi	88.64
3ztg_A	92	E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mR	88.48
3lrq_A	100	E3 ubiquitin-protein ligase TRIM37; structural gen	88.15
2ysl_A	73	Tripartite motif-containing protein 31; ring-type	87.88
2csy_A	81	Zinc finger protein 183-like 1; ring finger protei	87.77
2ecn_A	70	Ring finger protein 141; RNF141, ring domain, zinc	86.84
1t1h_A	78	Gspef-atpub14, armadillo repeat containing protein	86.6
1jm7_A	112	BRCA1, breast cancer type 1 susceptibility protein	85.61
1g25_A	65	CDK-activating kinase assembly factor MAT1; ring f	85.54
4ap4_A	133	E3 ubiquitin ligase RNF4; ligase-signalling protei	84.06
4ap4_A	133	E3 ubiquitin ligase RNF4; ligase-signalling protei	83.91
2egp_A	79	Tripartite motif-containing protein 34; ZF-C3HC4 d	83.33
4ayc_A	138	E3 ubiquitin-protein ligase RNF8; DNA damage, K63	82.78
3fl2_A	124	E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA	82.58
2ecj_A	58	Tripartite motif-containing protein 39; TRIM39, ri	82.11
2ckl_B	165	Ubiquitin ligase protein RING2; BMI1, RING1B, poly	81.69
1e4u_A	78	Transcriptional repressor NOT4; gene regulation, t	80.27

>1vyx_A ORF K3, K3RING; zinc-binding protein, ring domain, cross-brace motif; NMR {Human herpesvirus 8} SCOP: g.44.1.3

Probab=99.59  E-value=5e-16  Score=109.07  Aligned_cols=44  Identities=27%  Similarity=0.697  Sum_probs=41.1

Q ss_pred             cCCCccccccccCchhhHHHHHHHHHHHHcCCccccccCccccc
Q 039690            4 SIKNLEVPCSCSGSLKYAHRKCVQRWCNEKGDVTCEICHQPYQP   47 (216)
Q Consensus         4 ~~~~li~PC~C~GSlkyvH~~CL~~W~~~k~~~~CEICk~~y~~   47 (216)
                      .+++++.||+|+||+||+|+.||++|++.|++.+||+|+++|++
T Consensus        16 ~~~~l~~PC~C~gs~~~~H~~Cl~~W~~~~~~~~C~~C~~~~~~   59 (60)
T 1vyx_A           16 LGNERFRACGCTGELENVHRSCLSTWLTISRNTACQICGVVYNT   59 (60)
T ss_dssp             CSCCCCCSCCCSSGGGSCCHHHHHHHHHHHTCSBCTTTCCBCCC
T ss_pred             CCCceecCcCCCCchhhhHHHHHHHHHHhCCCCccCCCCCeeec
Confidence            45568999999999999999999999999999999999999986

>2d8s_A Cellular modulator of immune recognition; C-MIR, march8, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.45  E-value=2.4e-14  Score=105.60  Aligned_cols=53  Identities=30%  Similarity=0.764  Sum_probs=46.8

Q ss_pred             ccCCCccccccccCchhhHHHHHHHHHHHHcCCccccccCcccccccCCCCCC
Q 039690            3 DSIKNLEVPCSCSGSLKYAHRKCVQRWCNEKGDVTCEICHQPYQPGYTAPPPP   55 (216)
Q Consensus         3 d~~~~li~PC~C~GSlkyvH~~CL~~W~~~k~~~~CEICk~~y~~~y~~p~p~   55 (216)
                      +++++++.||+|+|+++++|..||++|++.+++.+|++|++.|.+....+||.
T Consensus        26 ~~~~~l~~pC~C~Gs~h~fH~~Cl~~Wl~~~~~~~CplCr~~~~~~~~~~P~~   78 (80)
T 2d8s_A           26 DDESPLITPCHCTGSLHFVHQACLQQWIKSSDTRCCELCKYEFIMETKLSGPS   78 (80)
T ss_dssp             CSSSCEECSSSCCSSSCCEETTHHHHHHHHHCCSBCSSSCCBCCCCCCSCCCC
T ss_pred             cCCCeeEeccccCCcCCeeCHHHHHHHHhhCCCCCCCCCCCeeecCcccCCCC
Confidence            45678899999999999999999999999999999999999999877655443

>2ct0_A Non-SMC element 1 homolog; ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=96.52  E-value=0.0011  Score=47.96  Aligned_cols=31  Identities=16%  Similarity=0.485  Sum_probs=26.6

Q ss_pred             hHHHHHHHHHHHHcCCccccccCcccccccC
Q 039690           20 YAHRKCVQRWCNEKGDVTCEICHQPYQPGYT   50 (216)
Q Consensus        20 yvH~~CL~~W~~~k~~~~CEICk~~y~~~y~   50 (216)
                      -.|..|+.+|++.+++.+|.+|++.+...-.
T Consensus        37 ~fH~~Ci~kWl~~~~~~~CP~Cr~~w~~~~~   67 (74)
T 2ct0_A           37 RMHLPCVAKYFQSNAEPRCPHCNDYWPHEIP   67 (74)
T ss_dssp             EECHHHHHHHSTTCSSCCCTTTCSCCCSCCC
T ss_pred             hhhHHHHHHHHHhcCCCCCCCCcCcCCCCCC
Confidence            3699999999998888999999999886543

>1v87_A Deltex protein 2; ring-H2 domain, zinc-binding domain, notch signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.44.1.1

Probab=95.80  E-value=0.0065  Score=45.20  Aligned_cols=32  Identities=19%  Similarity=0.385  Sum_probs=26.5

Q ss_pred             hhHHHHHHHHHHHH---cCCccccccCcccccccC
Q 039690           19 KYAHRKCVQRWCNE---KGDVTCEICHQPYQPGYT   50 (216)
Q Consensus        19 kyvH~~CL~~W~~~---k~~~~CEICk~~y~~~y~   50 (216)
                      ...|..||.+|++.   +....|.+|+..|.....
T Consensus        63 H~Fh~~Ci~~wl~~~~~~~~~~CP~CR~~~~~~~g   97 (114)
T 1v87_A           63 HAFHLLCLLAMYCNGNKDGSLQCPSCKTIYGEKTG   97 (114)
T ss_dssp             CEECHHHHHHHHHHTCCSSCCBCTTTCCBSSSCSS
T ss_pred             CcccHHHHHHHHHcccCCCCCcCCCCCCccCCCCC
Confidence            46899999999975   457899999999976543

>2ect_A Ring finger protein 126; metal binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}

Probab=94.91  E-value=0.0056  Score=42.56  Aligned_cols=32  Identities=22%  Similarity=0.624  Sum_probs=24.9

Q ss_pred             hhHHHHHHHHHHHHcCCccccccCcccccccCCC
Q 039690           19 KYAHRKCVQRWCNEKGDVTCEICHQPYQPGYTAP   52 (216)
Q Consensus        19 kyvH~~CL~~W~~~k~~~~CEICk~~y~~~y~~p   52 (216)
                      +..|..|+.+|++.+  ..|.+|+.++...-..+
T Consensus        38 H~fc~~Ci~~~~~~~--~~CP~Cr~~~~~~~~~~   69 (78)
T 2ect_A           38 HLFHDSCIVPWLEQH--DSCPVCRKSLTGQNTAT   69 (78)
T ss_dssp             CEEETTTTHHHHTTT--CSCTTTCCCCCCSCSCC
T ss_pred             CeecHHHHHHHHHcC--CcCcCcCCccCCcccCC
Confidence            457999999999654  68999999987654433

>2kiz_A E3 ubiquitin-protein ligase arkadia; ring-H2 finger, E3 ligase, Zn binding domain, metal zinc, zinc-finger, metal binding protein; NMR {Homo sapiens}

Probab=94.90  E-value=0.016  Score=39.29  Aligned_cols=28  Identities=25%  Similarity=0.669  Sum_probs=22.7

Q ss_pred             hhHHHHHHHHHHHHcCCccccccCcccccc
Q 039690           19 KYAHRKCVQRWCNEKGDVTCEICHQPYQPG   48 (216)
Q Consensus        19 kyvH~~CL~~W~~~k~~~~CEICk~~y~~~   48 (216)
                      +..|..|+.+|++.+.  .|.+|+..+...
T Consensus        37 H~fc~~Ci~~~~~~~~--~CP~Cr~~~~~~   64 (69)
T 2kiz_A           37 HLFHQVCVDQWLITNK--KCPICRVDIEAQ   64 (69)
T ss_dssp             CEEEHHHHHHHHHHCS--BCTTTCSBSCSC
T ss_pred             CHHHHHHHHHHHHcCC--CCcCcCccccCc
Confidence            3479999999998754  699999987653

>2ep4_A Ring finger protein 24; zinc binding, ubiquitin, E3 enzyme, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=94.51  E-value=0.029  Score=38.44  Aligned_cols=27  Identities=30%  Similarity=0.834  Sum_probs=22.5

Q ss_pred             hhHHHHHHHHHHHHcCCccccccCccccc
Q 039690           19 KYAHRKCVQRWCNEKGDVTCEICHQPYQP   47 (216)
Q Consensus        19 kyvH~~CL~~W~~~k~~~~CEICk~~y~~   47 (216)
                      +..|..|+.+|++.+.  .|.+|++.+..
T Consensus        38 H~f~~~Ci~~~~~~~~--~CP~Cr~~~~~   64 (74)
T 2ep4_A           38 HAFHRKCLIKWLEVRK--VCPLCNMPVLQ   64 (74)
T ss_dssp             EEEEHHHHHHHHHHCS--BCTTTCCBCSS
T ss_pred             CEecHHHHHHHHHcCC--cCCCcCccccc
Confidence            3579999999998754  89999998764

>2ecm_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2jrj_A

Probab=94.41  E-value=0.011  Score=38.15  Aligned_cols=33  Identities=27%  Similarity=0.701  Sum_probs=26.1

Q ss_pred             CccccccccCchhhHHHHHHHHHHHHcCCccccccCcccc
Q 039690            7 NLEVPCSCSGSLKYAHRKCVQRWCNEKGDVTCEICHQPYQ   46 (216)
Q Consensus         7 ~li~PC~C~GSlkyvH~~CL~~W~~~k~~~~CEICk~~y~   46 (216)
                      ....||.     ...|..|+.+|++.+  ..|.+|+..+.
T Consensus        22 ~~~~~Cg-----H~fc~~Ci~~~~~~~--~~CP~Cr~~~~   54 (55)
T 2ecm_A           22 AHVLPCG-----HLLHRTCYEEMLKEG--YRCPLCSGPSS   54 (55)
T ss_dssp             EEECTTS-----CEEETTHHHHHHHHT--CCCTTSCCSSC
T ss_pred             eEecCCC-----CcccHHHHHHHHHcC--CcCCCCCCcCC
Confidence            4566763     368999999999876  88999998764

>2l0b_A E3 ubiquitin-protein ligase praja-1; zinc finger, NESG, structural genomics, PSI-2, protein struc initiative; NMR {Homo sapiens}

Probab=94.39  E-value=0.012  Score=42.62  Aligned_cols=27  Identities=33%  Similarity=0.926  Sum_probs=22.2

Q ss_pred             hhHHHHHHHHHHHHcCCccccccCccccc
Q 039690           19 KYAHRKCVQRWCNEKGDVTCEICHQPYQP   47 (216)
Q Consensus        19 kyvH~~CL~~W~~~k~~~~CEICk~~y~~   47 (216)
                      ...|..|+.+|++.  +..|.+|+..+..
T Consensus        63 H~Fh~~Ci~~wl~~--~~~CP~Cr~~~~~   89 (91)
T 2l0b_A           63 HYFHKPCVSIWLQK--SGTCPVCRCMFPP   89 (91)
T ss_dssp             EEEEHHHHHHHHTT--TCBCTTTCCBSSC
T ss_pred             ChHHHHHHHHHHHc--CCcCcCcCccCCC
Confidence            46899999999964  4589999988754

>2ecl_A Ring-box protein 2; RNF7, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=94.23  E-value=0.013  Score=41.76  Aligned_cols=27  Identities=22%  Similarity=0.684  Sum_probs=23.0

Q ss_pred             hhHHHHHHHHHHHHcCCccccccCccccc
Q 039690           19 KYAHRKCVQRWCNEKGDVTCEICHQPYQP   47 (216)
Q Consensus        19 kyvH~~CL~~W~~~k~~~~CEICk~~y~~   47 (216)
                      ...|..|+.+|++.+  .+|++|++.+..
T Consensus        50 H~FH~~Ci~~Wl~~~--~~CP~CR~~~~~   76 (81)
T 2ecl_A           50 HSFHNCCMSLWVKQN--NRCPLCQQDWVV   76 (81)
T ss_dssp             CEEEHHHHHHHTTTC--CBCTTTCCBCCE
T ss_pred             CccChHHHHHHHHhC--CCCCCcCCCcch
Confidence            468999999999765  499999999864

>1x4j_A Ring finger protein 38; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=93.63  E-value=0.015  Score=40.28  Aligned_cols=27  Identities=37%  Similarity=0.844  Sum_probs=22.4

Q ss_pred             hhHHHHHHHHHHHHcCCccccccCccccc
Q 039690           19 KYAHRKCVQRWCNEKGDVTCEICHQPYQP   47 (216)
Q Consensus        19 kyvH~~CL~~W~~~k~~~~CEICk~~y~~   47 (216)
                      +..|..|+.+|++.+  ..|.+|+..+..
T Consensus        46 H~fh~~Ci~~w~~~~--~~CP~Cr~~~~~   72 (75)
T 1x4j_A           46 HEFHAKCVDKWLKAN--RTCPICRADSGP   72 (75)
T ss_dssp             EEEETTHHHHHHHHC--SSCTTTCCCCCC
T ss_pred             CHhHHHHHHHHHHcC--CcCcCcCCcCCC
Confidence            458999999999764  589999988764

>1iym_A EL5; ring-H2 finger, ubiquitin ligase, DNA binding protein; NMR {Oryza sativa} SCOP: g.44.1.1

Probab=93.22  E-value=0.016  Score=37.45  Aligned_cols=26  Identities=27%  Similarity=0.667  Sum_probs=21.4

Q ss_pred             hhHHHHHHHHHHHHcCCccccccCcccc
Q 039690           19 KYAHRKCVQRWCNEKGDVTCEICHQPYQ   46 (216)
Q Consensus        19 kyvH~~CL~~W~~~k~~~~CEICk~~y~   46 (216)
                      ...|..|+.+|++.  +..|.+|+.++.
T Consensus        29 H~f~~~Ci~~w~~~--~~~CP~Cr~~~~   54 (55)
T 1iym_A           29 HGFHAECVDMWLGS--HSTCPLCRLTVV   54 (55)
T ss_dssp             CEECTTHHHHTTTT--CCSCSSSCCCSC
T ss_pred             CcccHHHHHHHHHc--CCcCcCCCCEeE
Confidence            35899999999965  568999998764

>2ct2_A Tripartite motif protein 32; zinc-finger protein HT2A, TAT- interacting protein, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=93.14  E-value=0.049  Score=38.12  Aligned_cols=36  Identities=17%  Similarity=0.445  Sum_probs=28.1

Q ss_pred             CccccccccCchhhHHHHHHHHHHHHc-CCccccccCccccc
Q 039690            7 NLEVPCSCSGSLKYAHRKCVQRWCNEK-GDVTCEICHQPYQP   47 (216)
Q Consensus         7 ~li~PC~C~GSlkyvH~~CL~~W~~~k-~~~~CEICk~~y~~   47 (216)
                      +...||.     +..|..|+.+|++.+ +...|.+|+..+..
T Consensus        32 ~~~~~Cg-----H~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~   68 (88)
T 2ct2_A           32 PKLLHCG-----HTICRQCLEKLLASSINGVRCPFCSKITRI   68 (88)
T ss_dssp             EEECSSS-----CEEEHHHHHHHHHHCSSCBCCTTTCCCBCC
T ss_pred             eEECCCC-----ChhhHHHHHHHHHcCCCCcCCCCCCCcccc
Confidence            4455652     457999999999876 57899999998765

>2ea6_A Ring finger protein 4; RNF4, RES4-26, ring domain, zinc- binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=92.46  E-value=0.071  Score=35.49  Aligned_cols=27  Identities=15%  Similarity=0.383  Sum_probs=22.4

Q ss_pred             hhHHHHHHHHHHHHcCCccccccCccccc
Q 039690           19 KYAHRKCVQRWCNEKGDVTCEICHQPYQP   47 (216)
Q Consensus        19 kyvH~~CL~~W~~~k~~~~CEICk~~y~~   47 (216)
                      ...|..|+.+|++.  ...|.+|+..+..
T Consensus        42 H~fc~~Ci~~~~~~--~~~CP~Cr~~~~~   68 (69)
T 2ea6_A           42 HVFCSQCLRDSLKN--ANTCPTCRKKINH   68 (69)
T ss_dssp             CEEEHHHHHHHHHH--CSSCTTTCCCCCC
T ss_pred             ChhcHHHHHHHHHc--CCCCCCCCCccCc
Confidence            35799999999976  5689999998753

>3ng2_A RNF4, snurf, ring finger protein 4; ring domain, E3 ligase, ubiquitylation, sumoylation, zinc-FI metal binding protein; 1.80A {Rattus norvegicus}

Probab=91.85  E-value=0.12  Score=34.80  Aligned_cols=26  Identities=15%  Similarity=0.388  Sum_probs=22.2

Q ss_pred             hHHHHHHHHHHHHcCCccccccCccccc
Q 039690           20 YAHRKCVQRWCNEKGDVTCEICHQPYQP   47 (216)
Q Consensus        20 yvH~~CL~~W~~~k~~~~CEICk~~y~~   47 (216)
                      ..|..|+.+|++.+  ..|.+|+..+..
T Consensus        38 ~fc~~Ci~~~~~~~--~~CP~Cr~~~~~   63 (71)
T 3ng2_A           38 VFCSQCLRDSLKNA--NTCPTCRKKINH   63 (71)
T ss_dssp             EEEHHHHHHHHHHC--SBCTTTCCBCCC
T ss_pred             hHhHHHHHHHHHcC--CCCCCCCCccCh
Confidence            47999999999765  599999998764

>3dpl_R Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST-virus interaction, receptor, UBL conjugation, UBL conjugation pathway, acetylation, cytoplasm; 2.60A {Homo sapiens} SCOP: g.44.1.1 PDB: 3dqv_R 3rtr_B 4f52_B 1u6g_B 2hye_D* 4a0c_D 4a0l_F* 1ldj_B 1ldk_C 2lgv_A

Probab=91.74  E-value=0.063  Score=40.74  Aligned_cols=27  Identities=19%  Similarity=0.561  Sum_probs=23.0

Q ss_pred             hhHHHHHHHHHHHHcCCccccccCccccc
Q 039690           19 KYAHRKCVQRWCNEKGDVTCEICHQPYQP   47 (216)
Q Consensus        19 kyvH~~CL~~W~~~k~~~~CEICk~~y~~   47 (216)
                      +.-|..|+.+|+..  ..+|++|+..|..
T Consensus        75 H~FH~~Ci~~Wl~~--~~~CP~Cr~~~~~  101 (106)
T 3dpl_R           75 HAFHFHCISRWLKT--RQVCPLDNREWEF  101 (106)
T ss_dssp             CEEEHHHHHHHHTT--CSBCSSSCSBCCE
T ss_pred             cEECHHHHHHHHHc--CCcCcCCCCccee
Confidence            45899999999975  5789999999864

>2xeu_A Ring finger protein 4; transcription, zinc-finger, metal-binding; HET: SUC; 1.50A {Homo sapiens}

Probab=91.51  E-value=0.11  Score=34.00  Aligned_cols=27  Identities=15%  Similarity=0.383  Sum_probs=22.7

Q ss_pred             hhHHHHHHHHHHHHcCCccccccCccccc
Q 039690           19 KYAHRKCVQRWCNEKGDVTCEICHQPYQP   47 (216)
Q Consensus        19 kyvH~~CL~~W~~~k~~~~CEICk~~y~~   47 (216)
                      ...|..|+.+|++.  +..|.+|+..+..
T Consensus        30 H~fc~~Ci~~~~~~--~~~CP~Cr~~~~~   56 (64)
T 2xeu_A           30 HVFCSQCLRDSLKN--ANTCPTCRKKINH   56 (64)
T ss_dssp             CEEEHHHHHHHHHH--CSBCTTTCCBCTT
T ss_pred             CchhHHHHHHHHHc--CCCCCCCCccCCc
Confidence            34799999999987  5699999998764

>2yur_A Retinoblastoma-binding protein 6; P53-associated cellular protein of testis, proliferation potential-related protein, protein P2P-R; NMR {Homo sapiens}

Probab=91.48  E-value=0.063  Score=37.14  Aligned_cols=27  Identities=26%  Similarity=0.442  Sum_probs=23.3

Q ss_pred             hHHHHHHHHHHHHcCCccccccCcccc
Q 039690           20 YAHRKCVQRWCNEKGDVTCEICHQPYQ   46 (216)
Q Consensus        20 yvH~~CL~~W~~~k~~~~CEICk~~y~   46 (216)
                      ..|..|+.+|++.++...|.+|+.++.
T Consensus        37 ~fC~~Ci~~~~~~~~~~~CP~Cr~~~~   63 (74)
T 2yur_A           37 SYCDECIRTALLESDEHTCPTCHQNDV   63 (74)
T ss_dssp             EECTTHHHHHHHHSSSSCCSSSCCSSC
T ss_pred             HHHHHHHHHHHHhcCCCcCCCCCCcCC
Confidence            467899999999888889999999743

>2ecw_A Tripartite motif-containing protein 30; metal binding protein, structural genomics, NPPSFA; NMR {Mus musculus}

Probab=91.32  E-value=0.13  Score=35.45  Aligned_cols=28  Identities=25%  Similarity=0.589  Sum_probs=24.0

Q ss_pred             hHHHHHHHHHHHHc----CCccccccCccccc
Q 039690           20 YAHRKCVQRWCNEK----GDVTCEICHQPYQP   47 (216)
Q Consensus        20 yvH~~CL~~W~~~k----~~~~CEICk~~y~~   47 (216)
                      ..|..|+.+|++.+    +...|.+|+..+..
T Consensus        40 ~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~   71 (85)
T 2ecw_A           40 SFCRACITLNYESNRNTDGKGNCPVCRVPYPF   71 (85)
T ss_dssp             CBCHHHHHHHHHHSBCTTSCBCCTTTCCCCCT
T ss_pred             HHHHHHHHHHHHhccCCCCCCCCCCCCCcCCH
Confidence            47899999999884    48999999998764

>2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=90.97  E-value=0.033  Score=38.17  Aligned_cols=29  Identities=17%  Similarity=0.311  Sum_probs=23.5

Q ss_pred             hhHHHHHHHHHHHHcCCccccccCccccccc
Q 039690           19 KYAHRKCVQRWCNEKGDVTCEICHQPYQPGY   49 (216)
Q Consensus        19 kyvH~~CL~~W~~~k~~~~CEICk~~y~~~y   49 (216)
                      +..|..|+.+|+..+  ..|.+|+..+....
T Consensus        35 H~fC~~Ci~~~~~~~--~~CP~Cr~~~~~~~   63 (71)
T 2d8t_A           35 HVFCYLCVKGASWLG--KRCALCRQEIPEDF   63 (71)
T ss_dssp             EEEEHHHHHHCTTCS--SBCSSSCCBCCHHH
T ss_pred             CHHHHHHHHHHHHCC--CcCcCcCchhCHhh
Confidence            347899999999654  79999999987643

>2ecy_A TNF receptor-associated factor 3; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=90.61  E-value=0.13  Score=34.58  Aligned_cols=27  Identities=11%  Similarity=0.347  Sum_probs=22.5

Q ss_pred             hHHHHHHHHHHHHcCCccccccCccccc
Q 039690           20 YAHRKCVQRWCNEKGDVTCEICHQPYQP   47 (216)
Q Consensus        20 yvH~~CL~~W~~~k~~~~CEICk~~y~~   47 (216)
                      ..|..|+.+|++ ++...|.+|+..+..
T Consensus        36 ~fC~~Ci~~~~~-~~~~~CP~Cr~~~~~   62 (66)
T 2ecy_A           36 RFCESCMAALLS-SSSPKCTACQESIVK   62 (66)
T ss_dssp             CCCHHHHHHHHT-TSSCCCTTTCCCCCT
T ss_pred             HHHHHHHHHHHH-hCcCCCCCCCcCCCh
Confidence            468999999997 567789999998764

>2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=90.19  E-value=0.27  Score=33.50  Aligned_cols=27  Identities=15%  Similarity=0.300  Sum_probs=22.6

Q ss_pred             hHHHHHHHHHHHHcCCccccccCcccccc
Q 039690           20 YAHRKCVQRWCNEKGDVTCEICHQPYQPG   48 (216)
Q Consensus        20 yvH~~CL~~W~~~k~~~~CEICk~~y~~~   48 (216)
                      ..|..|+.+|++.  ...|.+|+..+...
T Consensus        37 ~fC~~Ci~~~~~~--~~~CP~Cr~~~~~~   63 (72)
T 2djb_A           37 TFCKSCIVRHFYY--SNRCPKCNIVVHQT   63 (72)
T ss_dssp             EECHHHHHHHHHH--CSSCTTTCCCCCSS
T ss_pred             HHHHHHHHHHHHc--CCcCCCcCcccCcc
Confidence            4689999999976  57999999998753

>1chc_A Equine herpes virus-1 ring domain; viral protein; NMR {Equid herpesvirus 1} SCOP: g.44.1.1

Probab=88.87  E-value=0.26  Score=32.87  Aligned_cols=33  Identities=27%  Similarity=0.826  Sum_probs=25.2

Q ss_pred             ccccccccCchhhHHHHHHHHHHHHcCCccccccCccccc
Q 039690            8 LEVPCSCSGSLKYAHRKCVQRWCNEKGDVTCEICHQPYQP   47 (216)
Q Consensus         8 li~PC~C~GSlkyvH~~CL~~W~~~k~~~~CEICk~~y~~   47 (216)
                      ...||.     +..|..|+.+|++.+  ..|.+|+..+..
T Consensus        20 ~~~~C~-----H~fc~~Ci~~~~~~~--~~CP~Cr~~~~~   52 (68)
T 1chc_A           20 MALPCL-----HAFCYVCITRWIRQN--PTCPLCKVPVES   52 (68)
T ss_dssp             EETTTT-----EEESTTHHHHHHHHS--CSTTTTCCCCCC
T ss_pred             EecCCC-----CeeHHHHHHHHHhCc--CcCcCCChhhHh
Confidence            455653     347899999999754  689999998764

>4a0k_B E3 ubiquitin-protein ligase RBX1; ligase-DNA-binding protein-DNA complex, DNA-binding protein- complex; HET: DNA 3DR; 5.93A {Mus musculus}

Probab=88.81  E-value=0.08  Score=41.18  Aligned_cols=27  Identities=19%  Similarity=0.561  Sum_probs=0.0

Q ss_pred             hhHHHHHHHHHHHHcCCccccccCccccc
Q 039690           19 KYAHRKCVQRWCNEKGDVTCEICHQPYQP   47 (216)
Q Consensus        19 kyvH~~CL~~W~~~k~~~~CEICk~~y~~   47 (216)
                      ...|..|+.+|++.  ...|++|+..|+.
T Consensus        86 H~FH~~CI~~Wl~~--~~~CP~Cr~~~~~  112 (117)
T 4a0k_B           86 HAFHFHCISRWLKT--RQVCPLDNREWEF  112 (117)
T ss_dssp             -----------------------------
T ss_pred             ceEcHHHHHHHHHc--CCcCCCCCCeeee
Confidence            45899999999977  4689999999864

>2ecv_A Tripartite motif-containing protein 5; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=88.64  E-value=0.4  Score=32.82  Aligned_cols=28  Identities=29%  Similarity=0.729  Sum_probs=23.9

Q ss_pred             hHHHHHHHHHHHH----cCCccccccCccccc
Q 039690           20 YAHRKCVQRWCNE----KGDVTCEICHQPYQP   47 (216)
Q Consensus        20 yvH~~CL~~W~~~----k~~~~CEICk~~y~~   47 (216)
                      ..|..|+.+|++.    ++...|.+|+..+..
T Consensus        40 ~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~   71 (85)
T 2ecv_A           40 SFCQACLTANHKKSMLDKGESSCPVCRISYQP   71 (85)
T ss_dssp             CBCTTHHHHHHHHHHHTTSCCCCTTTCCSSCS
T ss_pred             HHHHHHHHHHHHHhhcCCCCCcCCCCCCccCH
Confidence            4689999999987    468899999999875

>3ztg_A E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mRNA processing, mRNA splicing; NMR {Homo sapiens}

Probab=88.48  E-value=0.24  Score=35.09  Aligned_cols=26  Identities=27%  Similarity=0.483  Sum_probs=23.0

Q ss_pred             HHHHHHHHHHHHcCCccccccCcccc
Q 039690           21 AHRKCVQRWCNEKGDVTCEICHQPYQ   46 (216)
Q Consensus        21 vH~~CL~~W~~~k~~~~CEICk~~y~   46 (216)
                      .+..|+.+|+..++...|.+|+..+.
T Consensus        36 fC~~Ci~~~~~~~~~~~CP~Cr~~~~   61 (92)
T 3ztg_A           36 YCDECIRTALLESDEHTCPTCHQNDV   61 (92)
T ss_dssp             ECHHHHHHHHHHCTTCCCTTTCCSSC
T ss_pred             HHHHHHHHHHHhcCCCcCcCCCCcCC
Confidence            56899999999888899999998863

>3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: MSE; 2.29A {Homo sapiens}

Probab=88.15  E-value=0.27  Score=35.96  Aligned_cols=27  Identities=30%  Similarity=0.778  Sum_probs=22.9

Q ss_pred             hHHHHHHHHHHHHcCCccccccCccccc
Q 039690           20 YAHRKCVQRWCNEKGDVTCEICHQPYQP   47 (216)
Q Consensus        20 yvH~~CL~~W~~~k~~~~CEICk~~y~~   47 (216)
                      ..|..|+.+|++.++ ..|.+|+..+..
T Consensus        44 ~FC~~Ci~~~~~~~~-~~CP~Cr~~~~~   70 (100)
T 3lrq_A           44 LCCFSCIRRWLTEQR-AQCPHCRAPLQL   70 (100)
T ss_dssp             EEEHHHHHHHHHHTC-SBCTTTCCBCCG
T ss_pred             hhhHHHHHHHHHHCc-CCCCCCCCcCCH
Confidence            468999999998765 799999999853

>2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=87.88  E-value=0.16  Score=34.41  Aligned_cols=28  Identities=18%  Similarity=0.414  Sum_probs=23.3

Q ss_pred             hHHHHHHHHHHHH-cCCccccccCccccc
Q 039690           20 YAHRKCVQRWCNE-KGDVTCEICHQPYQP   47 (216)
Q Consensus        20 yvH~~CL~~W~~~-k~~~~CEICk~~y~~   47 (216)
                      ..|..|+.+|++. ++...|.+|+..+..
T Consensus        41 ~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~   69 (73)
T 2ysl_A           41 NFCLKCITQIGETSCGFFKCPLCKTSVRK   69 (73)
T ss_dssp             EEEHHHHHHHCSSSCSCCCCSSSCCCCCC
T ss_pred             hhhHHHHHHHHHcCCCCCCCCCCCCcCCc
Confidence            4789999999974 467899999998764

>2csy_A Zinc finger protein 183-like 1; ring finger protein 161, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=87.77  E-value=0.27  Score=34.23  Aligned_cols=25  Identities=28%  Similarity=0.586  Sum_probs=21.1

Q ss_pred             hHHHHHHHHHHHHcCCccccccCcccc
Q 039690           20 YAHRKCVQRWCNEKGDVTCEICHQPYQ   46 (216)
Q Consensus        20 yvH~~CL~~W~~~k~~~~CEICk~~y~   46 (216)
                      ..|..|+.+|++.  ...|.+|+..+.
T Consensus        36 ~fC~~Ci~~~~~~--~~~CP~Cr~~~~   60 (81)
T 2csy_A           36 YFCESCALEHFRA--TPRCYICDQPTG   60 (81)
T ss_dssp             EEEHHHHHHHHHH--CSBCSSSCCBCC
T ss_pred             HhHHHHHHHHHHC--CCcCCCcCcccc
Confidence            4589999999965  668999999875

>2ecn_A Ring finger protein 141; RNF141, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=86.84  E-value=0.12  Score=34.81  Aligned_cols=33  Identities=27%  Similarity=0.800  Sum_probs=25.9

Q ss_pred             ccccccccCchhhHHHHHHHHHHHHcCCccccccCccccc
Q 039690            8 LEVPCSCSGSLKYAHRKCVQRWCNEKGDVTCEICHQPYQP   47 (216)
Q Consensus         8 li~PC~C~GSlkyvH~~CL~~W~~~k~~~~CEICk~~y~~   47 (216)
                      ...||.     +..|..|+.+|++  ....|.+|+..+..
T Consensus        28 ~~~~Cg-----H~fc~~Ci~~~~~--~~~~CP~Cr~~~~~   60 (70)
T 2ecn_A           28 LILPCA-----HSFCQKCIDKWSD--RHRNCPICRLQMTG   60 (70)
T ss_dssp             EEETTT-----EEECHHHHHHSSC--CCSSCHHHHHCTTC
T ss_pred             cccCCC-----CcccHHHHHHHHH--CcCcCCCcCCcccC
Confidence            455653     3479999999997  67899999998764

>1t1h_A Gspef-atpub14, armadillo repeat containing protein; ubiquitin ligase, E3 ligase, U-BOX,; NMR {Arabidopsis thaliana} SCOP: g.44.1.2

Probab=86.60  E-value=0.35  Score=33.19  Aligned_cols=28  Identities=21%  Similarity=0.510  Sum_probs=22.6

Q ss_pred             hhHHHHHHHHHHHHcCCccccccCccccc
Q 039690           19 KYAHRKCVQRWCNEKGDVTCEICHQPYQP   47 (216)
Q Consensus        19 kyvH~~CL~~W~~~k~~~~CEICk~~y~~   47 (216)
                      +..++.|+.+|++ ++..+|.+|+..+..
T Consensus        28 H~fc~~Ci~~~~~-~~~~~CP~C~~~~~~   55 (78)
T 1t1h_A           28 QTYERSSIQKWLD-AGHKTCPKSQETLLH   55 (78)
T ss_dssp             EEEEHHHHHHHHT-TTCCBCTTTCCBCSS
T ss_pred             CeecHHHHHHHHH-HCcCCCCCCcCCCCh
Confidence            3467999999996 357899999998764

>1jm7_A BRCA1, breast cancer type 1 susceptibility protein; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1

Probab=85.61  E-value=0.48  Score=34.46  Aligned_cols=37  Identities=19%  Similarity=0.538  Sum_probs=27.3

Q ss_pred             CCccccccccCchhhHHHHHHHHHHHHc-CCccccccCccccc
Q 039690            6 KNLEVPCSCSGSLKYAHRKCVQRWCNEK-GDVTCEICHQPYQP   47 (216)
Q Consensus         6 ~~li~PC~C~GSlkyvH~~CL~~W~~~k-~~~~CEICk~~y~~   47 (216)
                      ++...||.     +..|..|+.+|+..+ +...|.+|+..+..
T Consensus        33 ~p~~~~Cg-----H~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~   70 (112)
T 1jm7_A           33 EPVSTKCD-----HIFCKFCMLKLLNQKKGPSQCPLCKNDITK   70 (112)
T ss_dssp             SCCBCTTS-----CCCCSHHHHHHHHSSSSSCCCTTTSCCCCT
T ss_pred             CeEECCCC-----CHHHHHHHHHHHHhCCCCCCCcCCCCcCCH
Confidence            34455653     346889999999864 56799999988764

>1g25_A CDK-activating kinase assembly factor MAT1; ring finger (C3HC4), metal binding protein; NMR {Homo sapiens} SCOP: g.44.1.1

Probab=85.54  E-value=0.48  Score=31.51  Aligned_cols=27  Identities=22%  Similarity=0.455  Sum_probs=22.2

Q ss_pred             hHHHHHHHHHHHHcCCccccccCccccc
Q 039690           20 YAHRKCVQRWCNEKGDVTCEICHQPYQP   47 (216)
Q Consensus        20 yvH~~CL~~W~~~k~~~~CEICk~~y~~   47 (216)
                      ..+..|+.+|+.. +...|.+|+..+..
T Consensus        29 ~fC~~Ci~~~~~~-~~~~CP~Cr~~~~~   55 (65)
T 1g25_A           29 TLCESCVDLLFVR-GAGNCPECGTPLRK   55 (65)
T ss_dssp             CEEHHHHHHHHHT-TSSSCTTTCCCCSS
T ss_pred             HhHHHHHHHHHHc-CCCcCCCCCCcccc
Confidence            4689999999864 56789999998764

>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}

Probab=84.06  E-value=0.54  Score=34.69  Aligned_cols=27  Identities=15%  Similarity=0.381  Sum_probs=22.8

Q ss_pred             hhHHHHHHHHHHHHcCCccccccCccccc
Q 039690           19 KYAHRKCVQRWCNEKGDVTCEICHQPYQP   47 (216)
Q Consensus        19 kyvH~~CL~~W~~~k~~~~CEICk~~y~~   47 (216)
                      ...|..|+.+|++.+  ..|.+|+..+..
T Consensus        99 H~fc~~Ci~~~~~~~--~~CP~Cr~~~~~  125 (133)
T 4ap4_A           99 HVFCSQCLRDSLKNA--NTCPTCRKKINH  125 (133)
T ss_dssp             BEEEHHHHHHHHHHC--SBCTTTCCBCCG
T ss_pred             ChhhHHHHHHHHHcC--CCCCCCCCcCCh
Confidence            458999999999765  499999998864

>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}

Probab=83.91  E-value=0.45  Score=35.12  Aligned_cols=26  Identities=15%  Similarity=0.388  Sum_probs=21.9

Q ss_pred             hHHHHHHHHHHHHcCCccccccCccccc
Q 039690           20 YAHRKCVQRWCNEKGDVTCEICHQPYQP   47 (216)
Q Consensus        20 yvH~~CL~~W~~~k~~~~CEICk~~y~~   47 (216)
                      ..|..|+.+|++.+  ..|.+|+..+..
T Consensus        35 ~fc~~Ci~~~~~~~--~~CP~Cr~~~~~   60 (133)
T 4ap4_A           35 VFCSQCLRDSLKNA--NTCPTCRKKINH   60 (133)
T ss_dssp             EEEHHHHHHHHTTC--SBCTTTCCBCTT
T ss_pred             hhhHHHHHHHHHhC--CCCCCCCCcCcc
Confidence            57999999999754  499999999864

>2egp_A Tripartite motif-containing protein 34; ZF-C3HC4 domain, tripartite motif protein 34, interferon- responsive finger protein 1; NMR {Homo sapiens}

Probab=83.33  E-value=0.14  Score=35.14  Aligned_cols=37  Identities=24%  Similarity=0.577  Sum_probs=27.6

Q ss_pred             CCccccccccCchhhHHHHHHHHHHHHc-----CCccccccCccccc
Q 039690            6 KNLEVPCSCSGSLKYAHRKCVQRWCNEK-----GDVTCEICHQPYQP   47 (216)
Q Consensus         6 ~~li~PC~C~GSlkyvH~~CL~~W~~~k-----~~~~CEICk~~y~~   47 (216)
                      ++...||.     +..+..|+.+|++.+     +...|.+|+..+..
T Consensus        24 ~p~~l~Cg-----H~fC~~Ci~~~~~~~~~~~~~~~~CP~Cr~~~~~   65 (79)
T 2egp_A           24 EPLSLDCG-----HSLCRACITVSNKEAVTSMGGKSSCPVCGISYSF   65 (79)
T ss_dssp             SCCCCSSS-----CCCCHHHHSCCCCCCSSSCCCCCCCSSSCCCCCS
T ss_pred             CeeECCCC-----CHHHHHHHHHHHHhcccCCCCCCcCCCCCCcCCH
Confidence            34455653     346899999999863     47899999999864

>4ayc_A E3 ubiquitin-protein ligase RNF8; DNA damage, K63 chains; HET: CPQ; 1.90A {Homo sapiens} PDB: 4epo_C

Probab=82.78  E-value=0.33  Score=37.40  Aligned_cols=34  Identities=18%  Similarity=0.699  Sum_probs=25.3

Q ss_pred             CCccccccccCchhhHHHHHHHHHHHHcCCccccccCcccc
Q 039690            6 KNLEVPCSCSGSLKYAHRKCVQRWCNEKGDVTCEICHQPYQ   46 (216)
Q Consensus         6 ~~li~PC~C~GSlkyvH~~CL~~W~~~k~~~~CEICk~~y~   46 (216)
                      ++...||.     +..|..|+.+|+..  ...|++|+..+.
T Consensus        65 ~~~~~~Cg-----H~fc~~Ci~~~~~~--~~~CP~Cr~~~~   98 (138)
T 4ayc_A           65 EAVTLNCA-----HSFCSYCINEWMKR--KIECPICRKDIK   98 (138)
T ss_dssp             SEEEETTS-----CEEEHHHHHHHTTT--CSBCTTTCCBCC
T ss_pred             CceECCCC-----CCccHHHHHHHHHc--CCcCCCCCCcCC
Confidence            34456653     35799999999964  467999998864

>3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, ring finger domain, metal binding, DNA replication; 1.75A {Homo sapiens}

Probab=82.58  E-value=0.94  Score=33.95  Aligned_cols=27  Identities=15%  Similarity=0.384  Sum_probs=22.3

Q ss_pred             hHHHHHHHHHHHHcCCccccccCccccc
Q 039690           20 YAHRKCVQRWCNEKGDVTCEICHQPYQP   47 (216)
Q Consensus        20 yvH~~CL~~W~~~k~~~~CEICk~~y~~   47 (216)
                      ..|..|+.+|+. ++...|.+|+..+..
T Consensus        73 ~fC~~Ci~~~~~-~~~~~CP~Cr~~~~~   99 (124)
T 3fl2_A           73 NVCKDCLDRSFR-AQVFSCPACRYDLGR   99 (124)
T ss_dssp             EEEHHHHHHHHH-TTCCBCTTTCCBCCT
T ss_pred             cccHHHHHHHHh-HCcCCCCCCCccCCC
Confidence            368999999998 456799999998864

>2ecj_A Tripartite motif-containing protein 39; TRIM39, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=82.11  E-value=0.55  Score=30.09  Aligned_cols=31  Identities=23%  Similarity=0.845  Sum_probs=22.2

Q ss_pred             CCccccccccCchhhHHHHHHHHHHHH-cCCcccccc
Q 039690            6 KNLEVPCSCSGSLKYAHRKCVQRWCNE-KGDVTCEIC   41 (216)
Q Consensus         6 ~~li~PC~C~GSlkyvH~~CL~~W~~~-k~~~~CEIC   41 (216)
                      ++...||.     +..|..|+.+|++. ++...|.+|
T Consensus        27 ~p~~~~Cg-----H~fC~~Ci~~~~~~~~~~~~CP~C   58 (58)
T 2ecj_A           27 EPVIIECG-----HNFCKACITRWWEDLERDFPCPVC   58 (58)
T ss_dssp             SCCCCSSC-----CCCCHHHHHHHTTSSCCSCCCSCC
T ss_pred             ccEeCCCC-----CccCHHHHHHHHHhcCCCCCCCCC
Confidence            34455553     34689999999875 567889887

>2ckl_B Ubiquitin ligase protein RING2; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_C 2h0d_B

Probab=81.69  E-value=0.57  Score=36.89  Aligned_cols=27  Identities=15%  Similarity=0.395  Sum_probs=22.5

Q ss_pred             hhHHHHHHHHHHHHcCCccccccCcccc
Q 039690           19 KYAHRKCVQRWCNEKGDVTCEICHQPYQ   46 (216)
Q Consensus        19 kyvH~~CL~~W~~~k~~~~CEICk~~y~   46 (216)
                      +..|..|+.+|+.. +...|.+|+..+.
T Consensus        75 H~fC~~Ci~~~~~~-~~~~CP~Cr~~~~  101 (165)
T 2ckl_B           75 HRFCADCIITALRS-GNKECPTCRKKLV  101 (165)
T ss_dssp             CEEEHHHHHHHHHT-TCCBCTTTCCBCC
T ss_pred             ChhHHHHHHHHHHh-CcCCCCCCCCcCC
Confidence            45789999999974 4688999999875

>1e4u_A Transcriptional repressor NOT4; gene regulation, transcriptional control; NMR {Homo sapiens} SCOP: g.44.1.1 PDB: 1ur6_B

Probab=80.27  E-value=0.75  Score=32.73  Aligned_cols=37  Identities=27%  Similarity=0.610  Sum_probs=28.2

Q ss_pred             CccccccccCchhhHHHHHHHHHHHHcCCccccccCccccc
Q 039690            7 NLEVPCSCSGSLKYAHRKCVQRWCNEKGDVTCEICHQPYQP   47 (216)
Q Consensus         7 ~li~PC~C~GSlkyvH~~CL~~W~~~k~~~~CEICk~~y~~   47 (216)
                      ....||.|.   +..++.|+.+|.+. +...|.+|+..|..
T Consensus        26 ~~~~p~~CG---H~fC~~Cl~~~~~~-~~~~CP~CR~~~~~   62 (78)
T 1e4u_A           26 INFFPCTCG---YQICRFCWHRIRTD-ENGLCPACRKPYPE   62 (78)
T ss_dssp             TTCCSSTTS---CCCCHHHHHHHTTS-SCSBCTTTCCBCSS
T ss_pred             ccccccCCC---CCcCHHHHHHHHhc-CCCCCCCCCCccCC
Confidence            345678783   34789999998753 67899999999875

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	216
d1vyxa_	60	g.44.1.3 (A:) IE1B protein (ORF K3), N-terminal do	8e-07

>d1vyxa_ g.44.1.3 (A:) IE1B protein (ORF K3), N-terminal domain {Kaposi's sarcoma-associated herpesvirus, KSHV, HHV8 [TaxId: 37296]} Length = 60

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: Variant RING domain
domain: IE1B protein (ORF K3), N-terminal domain
species: Kaposi's sarcoma-associated herpesvirus, KSHV, HHV8 [TaxId: 37296]

 Score = 42.9 bits (100), Expect = 8e-07
 Identities = 13/45 (28%), Positives = 19/45 (42%)

Query: 2  EDSIKNLEVPCSCSGSLKYAHRKCVQRWCNEKGDVTCEICHQPYQ 46
          E+        C C+G L+  HR C+  W     +  C+IC   Y 
Sbjct: 14 EELGNERFRACGCTGELENVHRSCLSTWLTISRNTACQICGVVYN 58

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	216
d1vyxa_	60	IE1B protein (ORF K3), N-terminal domain {Kaposi's	99.17
d1v87a_	114	Deltex protein 2 RING-H2 domain {Mouse (Mus muscul	96.95
d1ur6b_	52	Not-4 N-terminal RING finger domain {Human (Homo s	96.32
d3dplr1	88	RIGG-box protein 1 (RBX1) of SCF ubiquitin ligase	95.13
d1chca_	68	Immediate early protein, IEEHV {Equine herpesvirus	93.9
d1fbva4	79	CBL {Human (Homo sapiens) [TaxId: 9606]}	93.44
d1iyma_	55	EL5 RING-H2 domain {Rice (Oryza sativa) [TaxId: 45	92.99
d1g25a_	65	TFIIH Mat1 subunit {Human (Homo sapiens) [TaxId: 9	92.23
d2baya1	56	Pre-mRNA splicing factor Prp19 {Baker's yeast (Sac	89.62
d1rmda2	86	V(D)J recombination activating protein 1 (RAG1), d	87.71
d1jm7a_	103	brca1 RING domain {Human (Homo sapiens) [TaxId: 96	86.45

>d1vyxa_ g.44.1.3 (A:) IE1B protein (ORF K3), N-terminal domain {Kaposi's sarcoma-associated herpesvirus, KSHV, HHV8 [TaxId: 37296]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: Variant RING domain
domain: IE1B protein (ORF K3), N-terminal domain
species: Kaposi's sarcoma-associated herpesvirus, KSHV, HHV8 [TaxId: 37296]

Probab=99.17  E-value=6.1e-12  Score=85.56  Aligned_cols=46  Identities=26%  Similarity=0.679  Sum_probs=42.0

Q ss_pred             ccCCCccccccccCchhhHHHHHHHHHHHHcCCccccccCcccccc
Q 039690            3 DSIKNLEVPCSCSGSLKYAHRKCVQRWCNEKGDVTCEICHQPYQPG   48 (216)
Q Consensus         3 d~~~~li~PC~C~GSlkyvH~~CL~~W~~~k~~~~CEICk~~y~~~   48 (216)
                      +.+++++.||.|+|+.+++|+.||++|++.+++.+|++|+++|+.+
T Consensus        15 ~~~~~~~~~c~c~~c~h~~H~~Cl~~W~~~~~~~~CP~Cr~~~~~k   60 (60)
T d1vyxa_          15 ELGNERFRACGCTGELENVHRSCLSTWLTISRNTACQICGVVYNTR   60 (60)
T ss_dssp             ECSCCCCCSCCCSSGGGSCCHHHHHHHHHHHTCSBCTTTCCBCCCC
T ss_pred             cCCCceeEecccCCCCCEEcHHHHHHHHhhCCCCCCcccCCeeecC
Confidence            3456789999999999999999999999999999999999999863

>d1v87a_ g.44.1.1 (A:) Deltex protein 2 RING-H2 domain {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: Deltex protein 2 RING-H2 domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.95  E-value=0.00039  Score=50.78  Aligned_cols=32  Identities=19%  Similarity=0.368  Sum_probs=26.6

Q ss_pred             hhHHHHHHHHHHHHc---CCccccccCcccccccC
Q 039690           19 KYAHRKCVQRWCNEK---GDVTCEICHQPYQPGYT   50 (216)
Q Consensus        19 kyvH~~CL~~W~~~k---~~~~CEICk~~y~~~y~   50 (216)
                      +..|..||..|++.+   +..+|.+|+..|-....
T Consensus        63 H~FH~~Ci~~Wl~~~~~~~~~~CP~CR~~~~~~~~   97 (114)
T d1v87a_          63 HAFHLLCLLAMYCNGNKDGSLQCPSCKTIYGEKTG   97 (114)
T ss_dssp             CEECHHHHHHHHHHTCCSSCCBCTTTCCBSSSCSS
T ss_pred             ChhhHHHHHHHHHhcCcCCCCccccccchhccCcC
Confidence            679999999999875   46799999999966543

>d1ur6b_ g.44.1.1 (B:) Not-4 N-terminal RING finger domain {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: Not-4 N-terminal RING finger domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.32  E-value=0.0007  Score=43.71  Aligned_cols=35  Identities=29%  Similarity=0.719  Sum_probs=27.1

Q ss_pred             cccccccCchhhHHHHHHHHHHHHcCCccccccCccccc
Q 039690            9 EVPCSCSGSLKYAHRKCVQRWCNEKGDVTCEICHQPYQP   47 (216)
Q Consensus         9 i~PC~C~GSlkyvH~~CL~~W~~~k~~~~CEICk~~y~~   47 (216)
                      ..+|.|.   +..|..|+.+|++.+ +.+|.+|+++|..
T Consensus        17 ~~~~~Cg---H~~c~~C~~~w~~~~-~~~CP~CR~~~~~   51 (52)
T d1ur6b_          17 FFPCTCG---YQICRFCWHRIRTDE-NGLCPACRKPYPE   51 (52)
T ss_dssp             CCSSSSS---CCCCHHHHHHHTTTS-CCBCTTTCCBCSC
T ss_pred             EEecCCC---CccchHHHHHHHhhc-CCCCCccCCcCCC
Confidence            3455663   689999999999754 4589999999863

>d3dplr1 g.44.1.1 (R:19-106) RIGG-box protein 1 (RBX1) of SCF ubiquitin ligase complex {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: RIGG-box protein 1 (RBX1) of SCF ubiquitin ligase complex
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.13  E-value=0.003  Score=44.45  Aligned_cols=27  Identities=19%  Similarity=0.598  Sum_probs=22.9

Q ss_pred             hhHHHHHHHHHHHHcCCccccccCccccc
Q 039690           19 KYAHRKCVQRWCNEKGDVTCEICHQPYQP   47 (216)
Q Consensus        19 kyvH~~CL~~W~~~k~~~~CEICk~~y~~   47 (216)
                      ..-|..||.+|++.+  .+|++|+++|..
T Consensus        59 H~FH~~Ci~~Wl~~~--~~CP~CR~~~~~   85 (88)
T d3dplr1          59 HAFHFHCISRWLKTR--QVCPLDNREWEF   85 (88)
T ss_dssp             CEEEHHHHHHHHTTC--SBCSSSCSBCCE
T ss_pred             CcccHHHHHHHHHHC--CcCCCCCCcccc
Confidence            468999999999764  579999999975

>d1chca_ g.44.1.1 (A:) Immediate early protein, IEEHV {Equine herpesvirus 1 [TaxId: 10326]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: Immediate early protein, IEEHV
species: Equine herpesvirus 1 [TaxId: 10326]

Probab=93.90  E-value=0.0082  Score=40.15  Aligned_cols=32  Identities=28%  Similarity=0.848  Sum_probs=24.9

Q ss_pred             ccccccccCchhhHHHHHHHHHHHHcCCccccccCcccc
Q 039690            8 LEVPCSCSGSLKYAHRKCVQRWCNEKGDVTCEICHQPYQ   46 (216)
Q Consensus         8 li~PC~C~GSlkyvH~~CL~~W~~~k~~~~CEICk~~y~   46 (216)
                      ...||.     ...|.+|+++|++.+  .+|++|++++.
T Consensus        20 ~~~~C~-----H~Fc~~Ci~~w~~~~--~~CP~CR~~i~   51 (68)
T d1chca_          20 MALPCL-----HAFCYVCITRWIRQN--PTCPLCKVPVE   51 (68)
T ss_dssp             EETTTT-----EEESTTHHHHHHHHS--CSTTTTCCCCC
T ss_pred             EEeCCC-----CcCcHHHHHHHHHhC--CcCCCCCcchH
Confidence            456764     357999999999864  57999998764

>d1fbva4 g.44.1.1 (A:356-434) CBL {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: CBL
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.44  E-value=0.025  Score=38.90  Aligned_cols=37  Identities=16%  Similarity=0.475  Sum_probs=27.3

Q ss_pred             CCCccccccccCchhhHHHHHHHHHHHHcCCccccccCccccc
Q 039690            5 IKNLEVPCSCSGSLKYAHRKCVQRWCNEKGDVTCEICHQPYQP   47 (216)
Q Consensus         5 ~~~li~PC~C~GSlkyvH~~CL~~W~~~k~~~~CEICk~~y~~   47 (216)
                      .++.+.||.     ...|..|+.+|+.++ ...|.+|++..+.
T Consensus        34 ~~~~~~~Cg-----H~fC~~Ci~~wl~~~-~~~CP~Cr~~i~~   70 (79)
T d1fbva4          34 KDVKIEPCG-----HLMCTSCLTSWQESE-GQGCPFCRCEIKG   70 (79)
T ss_dssp             CCEECSSSC-----CEECHHHHHHHHHTT-CCSCTTTCCCCCC
T ss_pred             CCeEEeCCC-----CeeeHHHHHHHHHHC-cCcCCCCCcCccC
Confidence            345567762     346999999999654 4579999999764

>d1iyma_ g.44.1.1 (A:) EL5 RING-H2 domain {Rice (Oryza sativa) [TaxId: 4530]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: EL5 RING-H2 domain
species: Rice (Oryza sativa) [TaxId: 4530]

Probab=92.99  E-value=0.01  Score=38.48  Aligned_cols=25  Identities=28%  Similarity=0.713  Sum_probs=20.9

Q ss_pred             hhHHHHHHHHHHHHcCCccccccCccc
Q 039690           19 KYAHRKCVQRWCNEKGDVTCEICHQPY   45 (216)
Q Consensus        19 kyvH~~CL~~W~~~k~~~~CEICk~~y   45 (216)
                      +..|.+|+.+|++.  +.+|++|++..
T Consensus        29 H~Fh~~Ci~~Wl~~--~~~CP~CR~~i   53 (55)
T d1iyma_          29 HGFHAECVDMWLGS--HSTCPLCRLTV   53 (55)
T ss_dssp             CEECTTHHHHTTTT--CCSCSSSCCCS
T ss_pred             CcccHHHHHHHHHh--CCcCCCCCCEe
Confidence            57899999999965  45799999864

>d1g25a_ g.44.1.1 (A:) TFIIH Mat1 subunit {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: TFIIH Mat1 subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.23  E-value=0.034  Score=36.78  Aligned_cols=27  Identities=19%  Similarity=0.375  Sum_probs=21.9

Q ss_pred             hhHHHHHHHHHHHHcCCccccccCcccc
Q 039690           19 KYAHRKCVQRWCNEKGDVTCEICHQPYQ   46 (216)
Q Consensus        19 kyvH~~CL~~W~~~k~~~~CEICk~~y~   46 (216)
                      ...|..|+.+|++.+ +..|++|++.++
T Consensus        28 H~fc~~Ci~~~~~~~-~~~CP~CR~~i~   54 (65)
T d1g25a_          28 HTLCESCVDLLFVRG-AGNCPECGTPLR   54 (65)
T ss_dssp             CCEEHHHHHHHHHTT-SSSCTTTCCCCS
T ss_pred             hHhhHHHHHHHhCcC-cCCCCCCCcCcc
Confidence            468999999999643 457999998864

>d2baya1 g.44.1.2 (A:1-56) Pre-mRNA splicing factor Prp19 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: U-box
domain: Pre-mRNA splicing factor Prp19
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=89.62  E-value=0.072  Score=34.14  Aligned_cols=38  Identities=13%  Similarity=0.243  Sum_probs=26.8

Q ss_pred             ccccccccCchhhHHHHHHHHHHHHcCCccccccCccccc
Q 039690            8 LEVPCSCSGSLKYAHRKCVQRWCNEKGDVTCEICHQPYQP   47 (216)
Q Consensus         8 li~PC~C~GSlkyvH~~CL~~W~~~k~~~~CEICk~~y~~   47 (216)
                      +..|-.-.-+-...++.|+.+|+++++  +|.+|+++...
T Consensus        10 ~~~Pv~~~~cGh~fc~~cI~~~l~~~~--~CP~c~~~l~~   47 (56)
T d2baya1          10 PRRPVLSPKSRTIFEKSLLEQYVKDTG--NDPITNEPLSI   47 (56)
T ss_dssp             CSSEEEETTTTEEEEHHHHHHHHHHHS--BCTTTCCBCCG
T ss_pred             HHhcCccCCCCCcccHHHHHHHHhhcc--CCCccCCcCCH
Confidence            444533222334678999999998865  69999998764

>d1rmda2 g.44.1.1 (A:1-86) V(D)J recombination activating protein 1 (RAG1), dimerization domain {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: V(D)J recombination activating protein 1 (RAG1), dimerization domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=87.71  E-value=0.2  Score=35.11  Aligned_cols=37  Identities=24%  Similarity=0.515  Sum_probs=26.6

Q ss_pred             CCccccccccCchhhHHHHHHHHHHHHcCCccccccCcccccc
Q 039690            6 KNLEVPCSCSGSLKYAHRKCVQRWCNEKGDVTCEICHQPYQPG   48 (216)
Q Consensus         6 ~~li~PC~C~GSlkyvH~~CL~~W~~~k~~~~CEICk~~y~~~   48 (216)
                      ++.+.||.     ....+.|+++|++.+ ..+|.+|+.++...
T Consensus        35 ~pv~~~Cg-----H~FC~~Ci~~~~~~~-~~~CP~Cr~p~~~~   71 (86)
T d1rmda2          35 DPVETSCK-----HLFCRICILRCLKVM-GSYCPSCRYPCFPT   71 (86)
T ss_dssp             SEEECTTS-----CEEEHHHHHHHHHHT-CSBCTTTCCBCCGG
T ss_pred             cceecCCC-----ChhhHHHHHHHHhhC-CCcCcccCCCCChh
Confidence            34455553     346789999999754 45799999988654

>d1jm7a_ g.44.1.1 (A:) brca1 RING domain {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: brca1 RING domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=86.45  E-value=0.17  Score=35.62  Aligned_cols=37  Identities=19%  Similarity=0.497  Sum_probs=27.7

Q ss_pred             CCccccccccCchhhHHHHHHHHHHHHc-CCccccccCccccc
Q 039690            6 KNLEVPCSCSGSLKYAHRKCVQRWCNEK-GDVTCEICHQPYQP   47 (216)
Q Consensus         6 ~~li~PC~C~GSlkyvH~~CL~~W~~~k-~~~~CEICk~~y~~   47 (216)
                      ++...||     -+..++.|+.+|++.+ +...|++|+..+..
T Consensus        33 ~pv~~~C-----gH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~   70 (103)
T d1jm7a_          33 EPVSTKC-----DHIFCKFCMLKLLNQKKGPSQCPLCKNDITK   70 (103)
T ss_dssp             SCCBCTT-----SCCCCSHHHHHHHHSSSSSCCCTTTSCCCCT
T ss_pred             CeEEcCC-----CCchhhHHHHHHHHHCCCCCcCcCCCCcCCh
Confidence            4555564     3468999999999765 46789999988753