Citrus Sinensis ID: 039707

Local Sequence Feature Prediction

Prediction and (Method)	Result

Residue Number Marker

Protein Sequence

Secondary Structure (PSIPRED)

Secondary Structure Prediction (SSPRO)

Coil and Loop (DISEMBL)

Flexible Loop (DISEMBL)

Low Complexity Region (SEG)

Disordered region (IsUnstruct)

Disordered Region (DISOPRED)

Disordered Region (DISEMBL)

Disordered Region (DISPRO)

Transmembrane Helix (TMHMM)

Transmembrane Helix (HMMTOP)

Transmembrane Helix (MEMSAT)

TM Helix, Signal Peptide (MEMSAT_SVM)

TM Helix, Signal Peptide (Phobius)

Signal Peptide (SignalP HMM Mode)

Signal Peptide (SignalP NN Mode)

Coiled Coils (COILS)

Positional Conservation

--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530------

ELLASKSAKVAAILDENPNQDLSYFLRDISPDTETFELVLRFCHGFEPQISTENVIPIIGLADYLEMTEAHCRNNLLRRALIFFEQEVLPSWNETIKALRVADDFLQQAVQLGLVDACFRSLIEKAVADPHLLGAPMKNLSCDEDSEDADDAYRPNARRKLFVIDWKSEDLTVLSLQLFDAIIRSMNQHGVPPEFVASSVCQYTKRWVLSSTVGDETVSIYKRKTQRDVLEAVEKLLPYERGLVPCTLLFEMLRYAIVLEASSDCRTGFEIRIGKQLDQATVRDLLIPSQGYAKEVQYDIECLRRILRNFCGSYSPSSQFPGYMKVAELIEKFLAEIAADIDLKMNTFLSIVEMSAEVHTVTQRNSDGIYMAIDIYFHKHRYLTESEREQVCRVLDCRKLSLEACEHAARNERLPLRLHIRDTITREVALFPDDKMIVKEEMDEEEEEEVVAEDEAMVIKEMKIMSNKVMELERECLVMRKELQKSCSLQQHNNHNDKNKQKNEKPSMWKEMKRKFGCITSIHDCNCQVKKKKVHP

cccccccHHHHHHHHcccccccccccccccccHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHccccccccHHHHHHHHHHHcccccHHHHHHHHHHHHcHHHHHHHHcHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHccccccccccccHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHccccHHHHHHHHHHHHcccccccccccccccccccccccccHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHcccccHHHHHHHHcccccccccHHHHHHHHHccccccHHHHHHHHHHHHccccccccHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccHHHHHHHHcccccccccccccccccccc

ccEEccHHHHHHHHHcccccccEEEEccccccHHHHHHHHHHHccEEEEEcHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHccccccccccccccccccccccccccccccccccHHHHHHHccHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHcccccccccccccccHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcHHHccccccccccccEccHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHcccHcccccccHHHHHHHHHHHcccccHHHHHHHHHHHcHHHccHHHHHHHHHHccccHHHEEEEEHHHHHHHHHHHccccccccccccccccccccccccHHcHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHcccccHccccccccccHHHHHHHHHccccccccccccccEEEEcc

ELLASKSAKVAAIldenpnqdlsyflrdispdteTFELVLRFChgfepqistenvipiiGLADYLEMTEAHCRNNLLRRALIFFEQEVLPSWNETIKALRVADDFLQQAVQLGLVDACFRSLIEKavadphllgapmknlscdedsedaddayrpnARRKLFVIDWKSEDLTVLSLQLFDAIIRSmnqhgvppefvassvcqyTKRWVlsstvgdetvsiYKRKTQRDVLEAVEKLLpyerglvpcTLLFEMLRYAIVLEAssdcrtgfeirigkqldqatvrdllipsqgyaKEVQYDIECLRRILRNfcgsyspssqfpgyMKVAELIEKFLAEIAADIDLKMNTFLSIVEMSAEVHTvtqrnsdgiYMAIDIYFHKHRYLTESEREQVCRVLDCRKLSLEACEHAARNERLPLRLHIRDTITREvalfpddkmivkeemdeeeeeevVAEDEAMVIKEMKIMSNKVMELERECLVMRKELQKscslqqhnnhndknkqknekpSMWKEMKRKfgcitsihdcncqvkkkkvhp

ellasksakvaaildenpnqdlSYFLRDISPDTETFELVLRFCHGFepqistenVIPIIGLADYLEMTEAHCRNNLLRRALIFFEQEVLPSWNETIKALRVADDFLQQAVQLGLVDACFRSLIEKAVadphllgapMKNLSCDEDSEDADDAYRPNARRKLFVIDWKSEDLTVLSLQLFDAIIRSMNQHGVPPEFVASSVCQYTKRWVlsstvgdetvsiykrktqrdVLEAVekllpyerglVPCTLLFEMLRYAIVLEASSDCRTGFEIRigkqldqatvRDLLIPSQGYAKEVQYDIECLRRILRNFCGSYSPSSQFPGYMKVAELIEKFLAEIAADIDLKMNTFLSIVEMSAEVHTVTQRNSDGIYMAIDIYFHKHRYLTESEREQVCRVLDCRKLSLEACEHaarnerlplrlhirdtitrevalfpddkMIVKeemdeeeeeevvaedeaMVIKEMKIMSNKVMELERECLVMRKELQKScslqqhnnhndknkqknekpsMWKEMKRKFGCITsihdcncqvkkkkvhp

ELLASKSAKVAAILDENPNQDLSYFLRDISPDTETFELVLRFCHGFEPQISTENVIPIIGLADYLEMTEAHCRNNLLRRALIFFEQEVLPSWNETIKALRVADDFLQQAVQLGLVDACFRSLIEKAVADPHLLGAPMKNLscdedsedaddaYRPNARRKLFVIDWKSEDLTVLSLQLFDAIIRSMNQHGVPPEFVASSVCQYTKRWVLSSTVGDETVSIYKRKTQRDVLEAVEKLLPYERGLVPCTLLFEMLRYAIVLEASSDCRTGFEIRIGKQLDQATVRDLLIPSQGYAKEVQYDIECLRRILRNFCGSYSPSSQFPGYMKVAELIEKFLAEIAADIDLKMNTFLSIVEMSAEVHTVTQRNSDGIYMAIDIYFHKHRYLTESEREQVCRVLDCRKLSLEACEHAARNERLPLRLHIRDTITREVALFPddkmivkeemdeeeeeevvaedeamviKEMKIMSNKVMELERECLVMRKELQKSCSLqqhnnhndknkqknEKPSMWKEMKRKFGCITSIHDCNCQVKKKKVHP

********************DLSYFLRDISPDTETFELVLRFCHGFEPQISTENVIPIIGLADYLEMTEAHCRNNLLRRALIFFEQEVLPSWNETIKALRVADDFLQQAVQLGLVDACFRSLIEKAVADPHLLGA*********************ARRKLFVIDWKSEDLTVLSLQLFDAIIRSMNQHGVPPEFVASSVCQYTKRWVLSSTVGDETVSIYKRKTQRDVLEAVEKLLPYERGLVPCTLLFEMLRYAIVLEASSDCRTGFEIRIGKQLDQATVRDLLIPSQGYAKEVQYDIECLRRILRNFCGSYSPSSQFPGYMKVAELIEKFLAEIAADIDLKMNTFLSIVEMSAEVHTVTQRNSDGIYMAIDIYFHKHRYLTESEREQVCRVLDCRKLSLEACEHAARNERLPLRLHIRDTITREVALFPDDKMI********************VIKEMKIMSNKVMELERECLVM**********************************RKFGCITSIHDCNCQV*******

ELLASKSAKVAA*************LRDISPDTETFELVLRFCHGFEPQISTENVIPIIGLADYLEMTEAHCRNNLLRRALIFFEQEVLPSWNETIKALRVADDFLQQAVQLGLVDACFRSLIEKAVADP***********************************WKSEDLTVLSLQLFDAIIRSMNQHGVPPEFVASSVCQYTKRWVL****************QRDVLEAVEKLLPYERGLVPCTLLFEMLRYAIVLEASSDCRTGFEIRIGKQLDQATVRDLLIPSQGYAKEVQYDIECLRRILR********************LIEKFLAEIAADIDLKMNTFLSIVEMSAEVHTVTQRNSDGIYMAIDIYFHKHRYLTESEREQVCRVLDCRKLSLEACEHAARNERLPLRLHIRDTIT***************************************************************************************************************

ELLASKSAKVAAILDENPNQDLSYFLRDISPDTETFELVLRFCHGFEPQISTENVIPIIGLADYLEMTEAHCRNNLLRRALIFFEQEVLPSWNETIKALRVADDFLQQAVQLGLVDACFRSLIEKAVADPHLLGAPMKNLSC********DAYRPNARRKLFVIDWKSEDLTVLSLQLFDAIIRSMNQHGVPPEFVASSVCQYTKRWVLSSTVGDETVSIYKRKTQRDVLEAVEKLLPYERGLVPCTLLFEMLRYAIVLEASSDCRTGFEIRIGKQLDQATVRDLLIPSQGYAKEVQYDIECLRRILRNFCGSYSPSSQFPGYMKVAELIEKFLAEIAADIDLKMNTFLSIVEMSAEVHTVTQRNSDGIYMAIDIYFHKHRYLTESEREQVCRVLDCRKLSLEACEHAARNERLPLRLHIRDTITREVALFPDDKMIVKE************EDEAMVIKEMKIMSNKVMELERECLVMRKELQKSCSLQQH**************SMWKEMKRKFGCITSIHDCNCQVKKKKVHP

*LLASKSAKVAAILDENPNQDLSYFLRDISPDTETFELVLRFCHGFEPQISTENVIPIIGLADYLEMTEAHCRNNLLRRALIFFEQEVLPSWNETIKALRVADDFLQQAVQLGLVDACFRSLIEKAVADPHLLGA*M***********************LFVIDWKSEDLTVLSLQLFDAIIRSMNQHGVPPEFVASSVCQYTKRWVLSST*******IYKRKTQRDVLEAVEKLLPYERGLVPCTLLFEMLRYAIVLEASSDCRTGFEIRIGKQLDQATVRDLLIPSQGYAKEVQYDIECLRRILRNFCGSYSPSSQFPGYMKVAELIEKFLAEIAADIDLKMNTFLSIVEMSAEVHTVTQRNSDGIYMAIDIYFHKHRYLTESEREQVCRVLDCRKLSLEACEHAARNERLPLRLHIRDTITREVALFPDDK************************KEMKIMSNKVMELERECLVMRKELQKSCSLQ******************W*E**RKFGCITSIHDCNCQVKKKKV**

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ELLASKSAKVAAILDENPNQDLSYFLRDISPDTETFELVLRFCHGFEPQISTENVIPIIGLADYLEMTEAHCRNNLLRRALIFFEQEVLPSWNETIKALRVADDFLQQAVQLGLVDACFRSLIEKAVADPHLLGAPMKNLSCDEDSEDADDAYRPNARRKLFVIDWKSEDLTVLSLQLFDAIIRSMNQHGVPPEFVASSVCQYTKRWVLSSTVGDETVSIYKRKTQRDVLEAVEKLLPYERGLVPCTLLFEMLRYAIVLEASSDCRTGFEIRIGKQLDQATVRDLLIPSQGYAKEVQYDIECLRRILRNFCGSYSPSSQFPGYMKVAELIEKFLAEIAADIDLKMNTFLSIVEMSAEVHTVTQRNSDGIYMAIDIYFHKHRYLTESEREQVCRVLDCRKLSLEACEHAARNERLPLRLHIRDTITREVALFPDDxxxxxxxxxxxxxxxxxxxxxAMVIKExxxxxxxxxxxxxxxxxxxxxLQKSCSLQQHNNHNDKNKQKNEKPSMWKEMKRKFGCITSIHDCNCQVKKKKVHP

no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Alignment graph	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query		536	2.2.26 [Sep-21-2011]
Q9LF66		548	BTB/POZ domain-containing	yes	no	0.912	0.892	0.413	1e-104
Q9SRQ5		508	BTB/POZ domain-containing	no	no	0.860	0.907	0.371	9e-90
Q9S9Q9		665	BTB/POZ domain-containing	no	no	0.899	0.724	0.323	1e-74
Q9LYW0		592	BTB/POZ domain-containing	no	no	0.888	0.804	0.332	2e-68
Q94A73		668	BTB/POZ domain-containing	no	no	0.912	0.732	0.310	7e-64
Q8LPQ3		569	BTB/POZ domain-containing	no	no	0.910	0.857	0.326	1e-61
Q9FNB3		591	Putative BTB/POZ domain-c	no	no	0.908	0.824	0.313	5e-59
Q9FKB6		614	BTB/POZ domain-containing	no	no	0.735	0.641	0.332	1e-56
Q9FYC8		651	BTB/POZ domain-containing	no	no	0.889	0.732	0.279	7e-55
Q66GP0		604	BTB/POZ domain-containing	no	no	0.75	0.665	0.317	8e-51

>sp\|Q9LF66\|Y5758_ARATH BTB/POZ domain-containing protein At5g17580 OS=Arabidopsis thaliana GN=At5g17580 PE=2 SV=1	Back alignment and function desciption

 Score =  379 bits (973), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 229/554 (41%), Positives = 333/554 (60%), Gaps = 65/554 (11%)

Query: 1   ELLASKSAKVAAILDENPNQDLSYFLRDISPDTETFELVLRFCHGFEPQISTENVIPIIG 60
           E+LA +S+KV+++L+ N   +L   LRD+  D ETFELV RFC+G E + +++ ++ ++ 
Sbjct: 23  EMLAKRSSKVSSLLERNEIDELRLILRDLEVDPETFELVARFCNGSEFKFTSDTIVSVLC 82

Query: 61  LADYLEMTEAHCRNNLLRRALIFFEQEVLPSWNETIKALRVADDFLQQAVQLGLVDACFR 120
           +A YL M E    NNLL +A  F E  V PSW+ETI ALR  D    +   +GLVD  F 
Sbjct: 83  IAYYLGMNEEQSSNNLLGKASEFLEHRVFPSWSETINALRSGDKSFDKLADVGLVDVFFD 142

Query: 121 SLIEKAVADPHLLGAPMKNLSCDEDSEDADDAYRPNARRKLFVIDWKSEDLTVLSLQLFD 180
           SLIEKA  DP LLG  +KN +      + DD YRPN RR+LFVIDWKSEDL  + L+L++
Sbjct: 143 SLIEKASYDPRLLGELIKNRA------ETDD-YRPNPRRRLFVIDWKSEDLITIPLRLYE 195

Query: 181 A-IIRSMNQHGVPPEFVASSVCQYTKRWVLSSTVGDETVSIYKRKTQRDVLEAVEKLLPY 239
             +IR++    +P E++  SVC+Y K+WV  +   +E++S      +R+ +E VE+LLPY
Sbjct: 196 PFMIRAIKSRSIPVEYIVLSVCKYAKKWVFDT---EESLS----GQKREAIEVVERLLPY 248

Query: 240 ERGLVPCTLLFEMLRYAIVLEASSDCRTGFEIRIGKQLDQATVRDLLIPSQGYAKEVQY- 298
           +RGL+ C LLFE L+++I LEASS+C+ GF IRI KQLD A   DL I S+GY ++ +  
Sbjct: 249 QRGLISCELLFESLKHSIWLEASSECQNGFMIRICKQLDMAKSTDLKILSRGYGEKAEGF 308

Query: 299 -DIECLRRILRNFCGSYS--PSSQFPGYMKVAELIEKFLAEIAADIDLKMNTFLSIVEMS 355
            +IE ++ ++++F   Y+   S     ++KVA+L E+FL   A++  LK+  F+ + EM+
Sbjct: 309 ENIELVKTVVKSFYTYYANEDSETVSHFVKVAKLSEEFLFLAASEASLKLEAFVELAEMT 368

Query: 356 AEVHTVTQRNSDGIYMAIDIYFHKHRYLTESEREQVCRVLDCRKLSLEACEHAARNERLP 415
             V       SDGIY AID++   HRYLTESE+ +VC+VL+C KLS E  E AA+N++LP
Sbjct: 369 VAVSQGILSYSDGIYRAIDVFLESHRYLTESEKMEVCKVLECGKLSQEGFERAAKNQKLP 428

Query: 416 LR----------LHIRDTITREVALFPDDKMIVKEEMDEEEEEEVVAEDEAMVIKEMKIM 465
           LR          L IRDT+ +E          +K   ++ +EEE    + +    EM+ M
Sbjct: 429 LRIVVNVLCVSQLQIRDTVAKE----------IKGMEEKVDEEEEEEIEVSSDEDEMEKM 478

Query: 466 SNKVMELE---RECLVMRKELQKSCSLQQHNNHNDKNKQKNEKP-SMWKEMKRKFGCIT- 520
           SNK++ LE    EC+V                H  KN +K +K  S+W ++KRKFGC+  
Sbjct: 479 SNKLLGLEIENDECVV----------------HRRKNMKKKKKKISVWGQVKRKFGCLNS 522

Query: 521 -----SIHDCNCQV 529
                S+  C C V
Sbjct: 523 SSSSYSVDACTCDV 536

May act as a substrate-specific adapter of an E3 ubiquitin-protein ligase complex (CUL3-RBX1-BTB) which mediates the ubiquitination and subsequent proteasomal degradation of target proteins.
Arabidopsis thaliana (taxid: 3702)

>sp\|Q9SRQ5\|Y3351_ARATH BTB/POZ domain-containing protein At3g03510 OS=Arabidopsis thaliana GN=At3g03510 PE=2 SV=2	Back alignment and function description

>sp\|Q9S9Q9\|Y1044_ARATH BTB/POZ domain-containing protein At1g30440 OS=Arabidopsis thaliana GN=At1g30440 PE=1 SV=2	Back alignment and function description

>sp\|Q9LYW0\|Y5325_ARATH BTB/POZ domain-containing protein At5g03250 OS=Arabidopsis thaliana GN=At5g03250 PE=2 SV=1	Back alignment and function description

>sp\|Q94A73\|Y5656_ARATH BTB/POZ domain-containing protein At5g66560 OS=Arabidopsis thaliana GN=At5g66560 PE=2 SV=2	Back alignment and function description

>sp\|Q8LPQ3\|Y3084_ARATH BTB/POZ domain-containing protein At3g50840 OS=Arabidopsis thaliana GN=At3g50840 PE=2 SV=2	Back alignment and function description

>sp\|Q9FNB3\|Y5360_ARATH Putative BTB/POZ domain-containing protein At5g13600 OS=Arabidopsis thaliana GN=At5g13600 PE=3 SV=1	Back alignment and function description

>sp\|Q9FKB6\|Y5880_ARATH BTB/POZ domain-containing protein At5g48800 OS=Arabidopsis thaliana GN=At5g48800 PE=1 SV=1	Back alignment and function description

>sp\|Q9FYC8\|Y3482_ARATH BTB/POZ domain-containing protein At3g44820 OS=Arabidopsis thaliana GN=At3g44820 PE=2 SV=2	Back alignment and function description

>sp\|Q66GP0\|Y5738_ARATH BTB/POZ domain-containing protein At5g67385 OS=Arabidopsis thaliana GN=At5g67385 PE=2 SV=2	Back alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Alignment Graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		536
224126129		552	predicted protein [Populus trichocarpa]	0.947	0.920	0.617	0.0
255566044		572	protein binding protein, putative [Ricin	0.960	0.900	0.578	1e-173
359489466		581	PREDICTED: BTB/POZ domain-containing pro	0.981	0.905	0.556	1e-171
449433167		578	PREDICTED: BTB/POZ domain-containing pro	0.968	0.897	0.531	1e-163
296088988		534	unnamed protein product [Vitis vinifera]	0.934	0.938	0.532	1e-158
449487630		383	PREDICTED: BTB/POZ domain-containing pro	0.690	0.966	0.575	1e-122
297807781		546	predicted protein [Arabidopsis lyrata su	0.908	0.891	0.411	1e-103
15237989		548	Phototropic-responsive NPH3 family prote	0.912	0.892	0.413	1e-102
338819813		508	RecName: Full=BTB/POZ domain-containing	0.860	0.907	0.371	6e-88
6017101		484	hypothetical protein [Arabidopsis thalia	0.861	0.954	0.367	2e-87

>gi\|224126129\|ref\|XP_002319762.1\| predicted protein [Populus trichocarpa] gi\|222858138\|gb\|EEE95685.1\| predicted protein [Populus trichocarpa]	Back alignment and taxonomy information

 Score =  649 bits (1675), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 333/539 (61%), Positives = 415/539 (76%), Gaps = 31/539 (5%)

Query: 1   ELLASKSAKVAAILDENPNQDLSYFLRDISPDTETFELVLRFCHGFEPQISTENVIPIIG 60
           +LL+++SAK+AA+L ENP + L++ LRDI  D ETFELV RFCHG+E  +STENVIP+I 
Sbjct: 28  DLLSARSAKIAALLKENPPEKLAFLLRDIPADPETFELVARFCHGYELILSTENVIPLIS 87

Query: 61  LADYLEMTEAHCRNNLLRRALIFFEQEVLPSWNETIKALRVADDFLQQAVQLGLVDACFR 120
           LA YLEMTE+H  NNLL + L FFE +VLPSWNETIKALR A   +QQ +  GLVDAC  
Sbjct: 88  LAYYLEMTESHSDNNLLDKTLAFFEDKVLPSWNETIKALRSASSIIQQVLHSGLVDACLE 147

Query: 121 SLIEKAVADPHLLGAPMKNLSCDEDSEDADDAYRPNARRKLFVIDWKSEDLTVLSLQLFD 180
           SLI KA+ADP LLG P+KN +C+EDSED ++ ++PNARRKLF  DWKSEDLT LSLQL++
Sbjct: 148 SLIYKALADPRLLGEPIKNSTCNEDSED-EEVFKPNARRKLFSPDWKSEDLTTLSLQLYN 206

Query: 181 AIIRSMNQHGVPPEFVASSVCQYTKRWVLSSTVGDETVSIYKRKTQRDVLEAVEKLLPYE 240
            +I++MNQHGVPPE+VA+S+CQY K+W  S     E  +IYK    R V+EAVE+LLP E
Sbjct: 207 PLIQAMNQHGVPPEYVAASLCQYVKKWANSG----ENETIYK----RGVIEAVERLLPPE 258

Query: 241 RGLVPCTLLFEMLRYAIVLEASSDCRTGFEIRIGKQLDQATVRDLLIPSQGYAKEVQYDI 300
           +G++PCTLLFEMLR AI LE S+DCR+GFEIRIGKQLDQA V+DLLIPSQGY+KE+QYDI
Sbjct: 259 KGILPCTLLFEMLRLAICLECSNDCRSGFEIRIGKQLDQAEVKDLLIPSQGYSKEIQYDI 318

Query: 301 ECLRRILRNFCGSYSPSSQFPGYMKVAELIEKFLAEIAADIDLKMNTFLSIVEMSAEVHT 360
           EC+RRIL++F  +YS S+   G + VAELIE+FL E+A+DIDL+++TF+S+ EMS     
Sbjct: 319 ECVRRILKHFYANYS-STDVSGIISVAELIEEFLMEVASDIDLRIDTFVSLAEMSLAASL 377

Query: 361 VTQRNSDGIYMAIDIYFHKHRYLTESEREQVCRVLDCRKLSLEACEHAARNERLPLR--- 417
            TQRNSDGIY AI+IY  KHRYLTE ERE+VCRVLDC+K+S EACEHAA+NERLP+R   
Sbjct: 378 GTQRNSDGIYRAINIYLDKHRYLTELEREEVCRVLDCQKMSPEACEHAAKNERLPVRFVV 437

Query: 418 -------LHIRDTITREVALFPDDKMIVKEEMDEEEEEEVVAEDEAMVIKEMKIMSNKVM 470
                  L +RDTIT+EV +F DDK+  +E +++EE E  +  DE  V  EM+ MS KVM
Sbjct: 438 QVLFVAQLQLRDTITKEVQVF-DDKL-RREVVEDEENEVKMGFDEEEVRVEMEKMSIKVM 495

Query: 471 ELERECLVMRKELQKSCSLQQHNNHNDKNKQKNEKPSMWKEMKRKFGCITSIHDCNCQV 529
           ELEREC +MRKE++  C+ Q         K K  K SMW+EMKRK GC++S HDCNCQV
Sbjct: 496 ELERECCIMRKEIEHGCTHQ---------KSKKGKVSMWREMKRKLGCVSSTHDCNCQV 545

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi\|255566044\|ref\|XP_002524010.1\| protein binding protein, putative [Ricinus communis] gi\|223536737\|gb\|EEF38378.1\| protein binding protein, putative [Ricinus communis]	Back alignment and taxonomy information

>gi\|359489466\|ref\|XP_002266823.2\| PREDICTED: BTB/POZ domain-containing protein At5g17580-like [Vitis vinifera]	Back alignment and taxonomy information

>gi\|449433167\|ref\|XP_004134369.1\| PREDICTED: BTB/POZ domain-containing protein At5g17580-like [Cucumis sativus]	Back alignment and taxonomy information

>gi\|296088988\|emb\|CBI38691.3\| unnamed protein product [Vitis vinifera]	Back alignment and taxonomy information

>gi\|449487630\|ref\|XP_004157722.1\| PREDICTED: BTB/POZ domain-containing protein At5g17580-like [Cucumis sativus]	Back alignment and taxonomy information

>gi\|297807781\|ref\|XP_002871774.1\| predicted protein [Arabidopsis lyrata subsp. lyrata] gi\|297317611\|gb\|EFH48033.1\| predicted protein [Arabidopsis lyrata subsp. lyrata]	Back alignment and taxonomy information

>gi\|15237989\|ref\|NP_197260.1\| Phototropic-responsive NPH3 family protein [Arabidopsis thaliana] gi\|75263844\|sp\|Q9LF66.1\|Y5758_ARATH RecName: Full=BTB/POZ domain-containing protein At5g17580 gi\|9755783\|emb\|CAC01902.1\| putative protein [Arabidopsis thaliana] gi\|332005062\|gb\|AED92445.1\| Phototropic-responsive NPH3 family protein [Arabidopsis thaliana]	Back alignment and taxonomy information

>gi\|338819813\|sp\|Q9SRQ5.2\|Y3351_ARATH RecName: Full=BTB/POZ domain-containing protein At3g03510	Back alignment and taxonomy information

>gi\|6017101\|gb\|AAF01584.1\|AC009895_5 hypothetical protein [Arabidopsis thaliana]	Back alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Alignment graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		536
TAIR\|locus:2151411		548	AT5G17580 [Arabidopsis thalian	0.944	0.923	0.401	2e-97
TAIR\|locus:2028160		665	AT1G30440 [Arabidopsis thalian	0.537	0.433	0.342	1.2e-71
TAIR\|locus:2077992		569	AT3G50840 [Arabidopsis thalian	0.936	0.882	0.303	4.6e-57
TAIR\|locus:2156524		614	AT5G48800 [Arabidopsis thalian	0.736	0.643	0.326	4.8e-56
TAIR\|locus:504954965		604	AT5G67385 [Arabidopsis thalian	0.75	0.665	0.317	3.6e-50
TAIR\|locus:2082132		651	AT3G44820 [Arabidopsis thalian	0.347	0.285	0.367	2.5e-49
TAIR\|locus:2200286		631	AT1G67900 [Arabidopsis thalian	0.615	0.522	0.256	5e-47
TAIR\|locus:2064357		593	RPT2 "ROOT PHOTOTROPISM 2" [Ar	0.464	0.419	0.339	2.7e-46
TAIR\|locus:2154920		668	AT5G66560 [Arabidopsis thalian	0.458	0.368	0.382	1.1e-45
TAIR\|locus:2158182		579	NPY3 "NAKED PINS IN YUC MUTANT	0.748	0.692	0.295	1e-43

TAIR\|locus:2151411 AT5G17580 [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

 Score = 968 (345.8 bits), Expect = 2.0e-97, P = 2.0e-97
 Identities = 221/551 (40%), Positives = 321/551 (58%)

Query:     1 ELLASKSAKVAAILDENPNQDLSYFLRDISPDTETFELVLRFCHGFEPQISTENVIPIIG 60
             E+LA +S+KV+++L+ N   +L   LRD+  D ETFELV RFC+G E + +++ ++ ++ 
Sbjct:    23 EMLAKRSSKVSSLLERNEIDELRLILRDLEVDPETFELVARFCNGSEFKFTSDTIVSVLC 82

Query:    61 LADYLEMTEAHCRNNLLRRALIFFEQEVLPSWNETIKALRVADDFLQQAVQLGLVDACFR 120
             +A YL M E    NNLL +A  F E  V PSW+ETI ALR  D    +   +GLVD  F 
Sbjct:    83 IAYYLGMNEEQSSNNLLGKASEFLEHRVFPSWSETINALRSGDKSFDKLADVGLVDVFFD 142

Query:   121 SLIEKAVADPHLLGAPMKNLXXXXXXXXXXXXYRPNARRKLFVIDWKSEDLTVLSLQLFD 180
             SLIEKA  DP LLG  +KN             YRPN RR+LFVIDWKSEDL  + L+L++
Sbjct:   143 SLIEKASYDPRLLGELIKN-------RAETDDYRPNPRRRLFVIDWKSEDLITIPLRLYE 195

Query:   181 A-IIRSMNQHGVPPEFVASSVCQYTKRWVLSSTVGDETVSIYKRKTQRDVLEAVEKLLPY 239
               +IR++    +P E++  SVC+Y K+WV  +   +E++S  KR    + +E VE+LLPY
Sbjct:   196 PFMIRAIKSRSIPVEYIVLSVCKYAKKWVFDT---EESLSGQKR----EAIEVVERLLPY 248

Query:   240 ERGLVPCTLLFEMLRYAIVLEASSDCRTGFEIRIGKQLDQATVRDLLIPSQGYAKEVQ-- 297
             +RGL+ C LLFE L+++I LEASS+C+ GF IRI KQLD A   DL I S+GY ++ +  
Sbjct:   249 QRGLISCELLFESLKHSIWLEASSECQNGFMIRICKQLDMAKSTDLKILSRGYGEKAEGF 308

Query:   298 YDIECLRRILRNFCGSYS--PSSQFPGYMKVAELIEKFLAEIAADIDLKMNTFLSIVEMS 355
              +IE ++ ++++F   Y+   S     ++KVA+L E+FL   A++  LK+  F+ + EM+
Sbjct:   309 ENIELVKTVVKSFYTYYANEDSETVSHFVKVAKLSEEFLFLAASEASLKLEAFVELAEMT 368

Query:   356 AEVHTVTQRNSDGIYMAIDIYFHKHRYLTESEREQVCRVLDCRKLSLEACEHAARNERLP 415
               V       SDGIY AID++   HRYLTESE+ +VC+VL+C KLS E  E AA+N++LP
Sbjct:   369 VAVSQGILSYSDGIYRAIDVFLESHRYLTESEKMEVCKVLECGKLSQEGFERAAKNQKLP 428

Query:   416 LRLHIRDTITREVALFPXXXXXXXXXXXXXXXXXXXXXXXXXXXKEMKIMSNKVMELE-- 473
             LR+ +      ++ +                              EM+ MSNK++ LE  
Sbjct:   429 LRIVVNVLCVSQLQIRDTVAKEIKGMEEKVDEEEEEEIEVSSDEDEMEKMSNKLLGLEIE 488

Query:   474 -RECLVMRKELQKSCSLXXXXXXXXXXXXXXEKPSMWKEMKRKFGCITS------IHDCN 526
               EC+V R++  K                  +K S+W ++KRKFGC+ S      +  C 
Sbjct:   489 NDECVVHRRKNMKK---------------KKKKISVWGQVKRKFGCLNSSSSSYSVDACT 533

Query:   527 CQVKKKK--VH 535
             C VKKKK  +H
Sbjct:   534 CDVKKKKKKIH 544

GO:0004871 "signal transducer activity" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0009416 "response to light stimulus" evidence=IEA;ISS

TAIR\|locus:2028160 AT1G30440 [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2077992 AT3G50840 [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2156524 AT5G48800 [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:504954965 AT5G67385 [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2082132 AT3G44820 [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2200286 AT1G67900 [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2064357 RPT2 "ROOT PHOTOTROPISM 2" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2154920 AT5G66560 [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2158182 NPY3 "NAKED PINS IN YUC MUTANTS 3" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9LF66	Y5758_ARATH	No assigned EC number	0.4133	0.9123	0.8923	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	eugene3.00130730	hypothetical protein (552 aa)
		(Populus trichocarpa)
Predicted Functional Partners:
		Sorry, there are no predicted associations at the current settings.

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Alignment Graph	Length	Definition	E-value
Query		536
pfam03000		249	pfam03000, NPH3, NPH3 family	3e-79
smart00225		97	smart00225, BTB, Broad-Complex, Tramtrack and Bric	4e-04

>gnl\|CDD\|217312 pfam03000, NPH3, NPH3 family	Back alignment and domain information

 Score =  248 bits (635), Expect = 3e-79
 Identities = 103/256 (40%), Positives = 151/256 (58%), Gaps = 23/256 (8%)

Query: 165 DWKSEDLTVLSLQLFDAIIRSMNQHGVPPEFVASSVCQYTKRWVLSSTVGDETVSIYKRK 224
           DW  EDL+ LS+ LF  +I +M   GV PE +  ++  Y K+W+   +    +    + +
Sbjct: 2   DWWFEDLSELSIDLFKRVITAMKSRGVKPEVIGEALMHYAKKWLPGLSRSGSSEEDSEEE 61

Query: 225 TQRDVLEAVEKLLPYERGLVPCTLLFEMLRYAIVLEASSDCRTGFEIRIGKQLDQATVRD 284
            QR +LE +  LLP E+G V C+ LF++LR AI+L AS  CR   E RIG QLDQAT+ D
Sbjct: 62  -QRALLETIVSLLPSEKGSVSCSFLFKLLRAAIILGASESCREELERRIGLQLDQATLDD 120

Query: 285 LLIPSQGYAKEVQYDIECLRRILRNF-------CGSYSPSSQF----PGYMKVAELIEKF 333
           LLIPS    +E  YD++ ++RIL  F         S    S+        +KVA+L++ +
Sbjct: 121 LLIPSGYSGEETLYDVDLVQRILEVFLSRDAATQSSDDEDSEASPSSSSLLKVAKLVDGY 180

Query: 334 LAEIAADIDLKMNTFLSIVEM----SAEVHTVTQRNSDGIYMAIDIYFHKHRYLTESERE 389
           LAEIA D +LK++ F+++ E     +   H       DG+Y AIDIY   H  L+ESE++
Sbjct: 181 LAEIAPDPNLKLSKFIALAEAVPDSARPSH-------DGLYRAIDIYLKAHPNLSESEKK 233

Query: 390 QVCRVLDCRKLSLEAC 405
           ++CR++DC+KLS EAC
Sbjct: 234 RLCRLMDCQKLSQEAC 249

Phototropism of Arabidopsis thaliana seedlings in response to a blue light source is initiated by nonphototropic hypocotyl 1 (NPH1), a light-activated serine-threonine protein kinase. Mutations in NPH3 disrupt early signaling occurring downstream of the NPH1 photoreceptor. The NPH3 gene encodes a NPH1-interacting protein. NPH3 is a member of a large protein family, apparently specific to higher plants, and may function as an adapter or scaffold protein to bring together the enzymatic components of a NPH1-activated phosphorelay. Length = 249

>gnl\|CDD\|197585 smart00225, BTB, Broad-Complex, Tramtrack and Bric a brac	Back alignment and domain information

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Alignment Graph	Length	Definition	Probability
Query		536
PF03000		258	NPH3: NPH3 family; InterPro: IPR004249 The RPT2 pr	100.0
PF00651		111	BTB: BTB/POZ domain; InterPro: IPR013069 The BTB (	98.09
PHA03098		534	kelch-like protein; Provisional	98.06
smart00225		90	BTB Broad-Complex, Tramtrack and Bric a brac. Doma	97.93
PHA02713		557	hypothetical protein; Provisional	97.2
KOG4441		571	consensus Proteins containing BTB/POZ and Kelch do	97.12
PHA02790		480	Kelch-like protein; Provisional	96.92
PF11822		317	DUF3342: Domain of unknown function (DUF3342); Int	94.51

>PF03000 NPH3: NPH3 family; InterPro: IPR004249 The RPT2 protein is a signal transducer of the phototropic response in Arabidopsis thaliana	Back alignment and domain information

Probab=100.00  E-value=2.6e-90  Score=691.50  Aligned_cols=239  Identities=42%  Similarity=0.737  Sum_probs=222.1

Q ss_pred             CCceeeecccCChHHHHHHHHHHHhCCCChhhHHHHHHHHHHhhhcCCCC-C-----CCcccchhhhhhhhHHHHHHhhC
Q 039707          164 IDWKSEDLTVLSLQLFDAIIRSMNQHGVPPEFVASSVCQYTKRWVLSSTV-G-----DETVSIYKRKTQRDVLEAVEKLL  237 (536)
Q Consensus       164 ~dWW~eDl~~L~~~lf~rvI~am~~~g~~~~~i~~~l~~Ya~k~lp~~~~-~-----~~~~~~~~~~~qr~llE~iv~LL  237 (536)
                      .|||||||+.|++++|+|||.+|+++||+|++|+++|++||+||||+... .     ..........+||.+||+||+||
T Consensus         1 ~dWW~eDl~~L~id~f~rvi~a~~~~~~~~~~I~~~l~~Ya~k~l~~~~~~~~~~~~~~~~~~~~~~~~r~llEtiV~lL   80 (258)
T PF03000_consen    1 KDWWFEDLSELSIDLFKRVISAMKSKGMKPEVIGEALMHYAKKWLPGLSRSSSGSSSSAESSTSSENEQRELLETIVSLL   80 (258)
T ss_pred             CCccHHHHHhCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCcccccccccccccccchhHHHHHHHHHHHHHhC
Confidence            48999999999999999999999999999999999999999999999521 1     12234566789999999999999


Q ss_pred             CCCCCCcchHHHHHHHHHHHhhcCCHHHHHHHHHHHHhhhcccccccccccCCCCCCccccchHHHHHHHHHHHcCCCC-
Q 039707          238 PYERGLVPCTLLFEMLRYAIVLEASSDCRTGFEIRIGKQLDQATVRDLLIPSQGYAKEVQYDIECLRRILRNFCGSYSP-  316 (536)
Q Consensus       238 P~~k~~vsc~fLf~LLR~A~~l~as~~cr~~LE~rIg~qLdqAtldDLLIPs~~~~~~tlyDVd~V~Ril~~Fl~~~~~-  316 (536)
                      |.+++++||+|||+|||+|++++||+.||.+||+|||.|||||||||||||+.+...+|+||||+|+|||++||.+++. 
T Consensus        81 P~e~~svsc~FL~~LLr~A~~l~as~~cr~~Le~rIg~qLd~AtldDLLIP~~~~~~~t~yDVd~V~riv~~Fl~~~~~~  160 (258)
T PF03000_consen   81 PPEKGSVSCSFLFRLLRAAIMLGASSACRNELERRIGSQLDQATLDDLLIPSSPSGEDTLYDVDLVQRIVEHFLSQEEEA  160 (258)
T ss_pred             CCCCCcccHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHhhhccHHHhcccCCCCcccchhhHHHHHHHHHHHHhccccc
Confidence            9999999999999999999999999999999999999999999999999999333445999999999999999998421 


Q ss_pred             ------------CCCchhhHHHHHHHHHHHHHHhcCCCCChHHHHHHhhhhccccCccccccchhhHHHHHHHHhCCCCC
Q 039707          317 ------------SSQFPGYMKVAELIEKFLAEIAADIDLKMNTFLSIVEMSAEVHTVTQRNSDGIYMAIDIYFHKHRYLT  384 (536)
Q Consensus       317 ------------~~~~~~l~~VakLvD~YLaEIA~D~nLk~~KF~~LA~~~ealPd~aR~~~DgLYRAIDiYLkaHp~Ls  384 (536)
                                  .++.+++.+||||||+||+|||+|+||+|+||++||   |++|++||++|||||||||||||+||+||
T Consensus       161 ~~~~~~~~~~~~~~~~~~~~~VakLvD~YLaEiA~D~~L~~~kF~~La---e~lP~~aR~~hD~LYrAID~YLk~Hp~ls  237 (258)
T PF03000_consen  161 GEEEESESESGSSPSSSSLVKVAKLVDGYLAEIAPDPNLKPSKFVALA---EALPDSARPSHDGLYRAIDIYLKAHPGLS  237 (258)
T ss_pred             ccccccccccccCCChHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHH---HHCCHhhhhccchHHHHHHHHHHHcccCC
Confidence                        346889999999999999999999999999999999   99999999999999999999999999999


Q ss_pred             hhhhhccccccccCcCCHHHh
Q 039707          385 ESEREQVCRVLDCRKLSLEAC  405 (536)
Q Consensus       385 e~Er~~lCr~ldcqKLS~EAc  405 (536)
                      ++||++||++|||||||+|||
T Consensus       238 ~~Er~~lC~~ldc~KLS~EAC  258 (258)
T PF03000_consen  238 EEERKRLCRLLDCQKLSPEAC  258 (258)
T ss_pred             HHHHHHHHhhCCcccCCcccC
Confidence            999999999999999999999

The RPT2 gene is light inducible; encodes a novel protein with putative phosphorylation sites, a nuclear localization signal, a BTB/POZ domain (IPR000210 from INTERPRO), and a coiled-coil domain. RPT2 belongs to a large gene family that includes the recently isolated NPH3 gene []. The NPH3 protein is a NPH1 photoreceptor-interacting protein that is essential for phototropism. Phototropism of A. thaliana seedlings in response to a blue light source is initiated by nonphototropic hypocotyl 1 (NPH1), a light-activated serine-threonine protein kinase []. NPH3 is a member of a large protein family, apparently specific to higher plants, and may function as an adapter or scaffold protein to bring together the enzymatic components of a NPH1-activated phosphorelay []. Many of the proteins in this group also contain the BTB/POZ domain (IPR000210 from INTERPRO) at the N-terminal.; GO: 0004871 signal transducer activity, 0009416 response to light stimulus

>PF00651 BTB: BTB/POZ domain; InterPro: IPR013069 The BTB (for BR-C, ttk and bab) [] or POZ (for Pox virus and Zinc finger) [] domain is present near the N terminus of a fraction of zinc finger (IPR007087 from INTERPRO) proteins and in proteins that contain the IPR006652 from INTERPRO motif such as Kelch and a family of pox virus proteins	Back alignment and domain information

>PHA03098 kelch-like protein; Provisional	Back alignment and domain information

>smart00225 BTB Broad-Complex, Tramtrack and Bric a brac	Back alignment and domain information

>PHA02713 hypothetical protein; Provisional	Back alignment and domain information

>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]	Back alignment and domain information

>PHA02790 Kelch-like protein; Provisional	Back alignment and domain information

>PF11822 DUF3342: Domain of unknown function (DUF3342); InterPro: IPR021777 This family of proteins are functionally uncharacterised	Back alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Alignment Graph	Length	Definition	E-value
Query		536
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	5e-16
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	6e-10
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	3e-05

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

 Score = 80.7 bits (198), Expect = 5e-16
 Identities = 91/577 (15%), Positives = 161/577 (27%), Gaps = 192/577 (33%)

Query: 14  LD-ENPNQDLSYFLRDISPDTETFELVLRFCHGFEPQISTENVIPIIGLADYLEMTEAHC 72
           +D E       Y  +DI    E       F   F+ +   +    I+   +   +  +  
Sbjct: 7   MDFETGEHQYQY--KDILSVFED-----AFVDNFDCKDVQDMPKSILSKEEIDHIIMSKD 59

Query: 73  RNNLLRRALIFFEQEVLPSWNETIKALRVADDFLQQAVQLG---LVDACFRSLIEKAVAD 129
             +   R                 K   +   F+++ +++    L+       I+     
Sbjct: 60  AVSGTLRLFWTLLS----------KQEEMVQKFVEEVLRINYKFLMSP-----IKTEQRQ 104

Query: 130 PHLLGAPMKNLSCDEDSEDADDAYRPNAR-RKLFVIDWKSEDLTVLSLQLFDAIIRSMNQ 188
           P        ++      E  D  Y  N    K  V   + +    L   L +  +R    
Sbjct: 105 P--------SMMTRMYIEQRDRLYNDNQVFAKYNV--SRLQPYLKLRQALLE--LRPAKN 152

Query: 189 ---HGVP---PEFVASSVCQYTKR---------WVLSSTVGDETVSIYKRKTQRDVLEAV 233
               GV      +VA  VC   K          W+    +           +   VLE +
Sbjct: 153 VLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWL---NLK-------NCNSPETVLEML 202

Query: 234 EKLLPYERGLVPCTLLFEMLRYAIVLEASSDCRTGFEIRIGKQLDQATVRDLLIPSQGYA 293
           +KLL                 Y I    +S       I++     QA +R LL  S+ Y 
Sbjct: 203 QKLL-----------------YQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLK-SKPYE 244

Query: 294 KEVQYDIECLRRILRNFCGSYSPSSQFPGYMKVAELIEKFLAEIAADIDLKMNTFLSIVE 353
                   CL  +L N                 A+    F      ++  K+   L    
Sbjct: 245 N-------CLL-VLLNVQN--------------AKAWNAF------NLSCKI---L---- 269

Query: 354 MSAEVHTVTQRNSDGIYMAIDIYFHKHRY-------LTESEREQVC-RVLDCR--KLSLE 403
                  +T R    +   +      H         LT  E + +  + LDCR   L  E
Sbjct: 270 -------LTTRFK-QVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPRE 321

Query: 404 ACEHAARNERLPLRLHIRDTITREVALFPD----------DKM--IVKEEMDEEEEEEVV 451
                      P RL I   I   +               DK+  I++  ++  E  E  
Sbjct: 322 VLTTN------PRRLSI---IAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYR 372

Query: 452 AEDEAMVI--KEMKIMSNKVMEL------ERECLVMRKELQKSCSLQQHNNHNDKNKQKN 503
              + + +      I +  ++ L      + + +V+  +L K   +++            
Sbjct: 373 KMFDRLSVFPPSAHIPT-ILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQ----------- 420

Query: 504 EKPSMWKEMKRKFGCITSIHDCNCQVKKK-----KVH 535
                 KE         SI     ++K K      +H
Sbjct: 421 -----PKEST------ISIPSIYLELKVKLENEYALH 446

PyMOL of 1vt4

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Alignment Graph	Length	Definition	Probability
Query		536
3i3n_A		279	Kelch-like protein 11; structural genomics, BTB, K	98.75
3hve_A		256	Gigaxonin; ubiquitin, cytoplasm, cytoskeleton, dis	98.64
2vpk_A		116	Myoneurin; transcription regulation, transcription	98.46
2z8h_A		138	Transcription regulator protein BACH1; BTB, POZ, d	98.44
3b84_A		119	Zinc finger and BTB domain-containing protein 48;	98.43
1buo_A		121	POZ domain, protein (promyelocytic leukemia zinc f	98.43
2vkp_A		109	BTB/POZ domain-containing protein 6; protein-bindi	98.41
3htm_A		172	Speckle-type POZ protein; BTB, SPOP, ubiquitin, li	98.37
2if5_A		120	Zinc finger and BTB domain-containing protein 7A;	98.34
2ppi_A		144	Gigaxonin; BTB domain, protein degradation, struct	98.32
2yy9_A		135	Zinc finger and BTB domain-containing protein 48;	98.31
3ga1_A		129	Nucleus accumbens-associated protein 1; BTB/POZ do	98.3
2q81_A		119	MIZ-1 protein; BTB/POZ domain, transcription; HET:	98.3
3ohu_A		125	Transcription regulator protein BACH2; BTB/POZ dom	98.29
1r29_A		127	B-cell lymphoma 6 protein; BTB domain, transcripti	98.27
4eoz_A		145	Speckle-type POZ protein; E3 ubiquitin ligase, nuc	98.23
2ihc_A		124	Transcription regulator protein BACH1; BRIC-A-BRAC	98.16
3m5b_A		119	Zinc finger and BTB domain-containing protein 32;	97.9
3fkc_A		116	Transcriptional regulator kaiso; zinc finger and B	97.86
3hqi_A		312	Speckle-type POZ protein; SPOP, ubiquitin, puckere	97.86
4ajy_C		97	Transcription elongation factor B polypeptide 1; E	95.81
2ast_A		159	S-phase kinase-associated protein 1A; SCF-substrat	95.76
1fs1_B		141	SKP1, cyclin A/CDK2-associated P45; F-BOX, LRR, le	92.99
2p1m_A		160	SKP1-like protein 1A; F-BOX, leucine rich repeat,	92.56
3vmx_A		48	Voltage-gated hydrogen channel 1; coiled-coil, ION	83.47

>3i3n_A Kelch-like protein 11; structural genomics, BTB, KLHL11A, SGC, structural genomics consortium, kelch repeat, secreted, protein binding; 2.60A {Homo sapiens} PDB: 4ap2_A* 4apf_A	Back alignment and structure

Probab=98.75  E-value=8.1e-09  Score=101.97  Aligned_cols=203  Identities=16%  Similarity=0.172  Sum_probs=138.7

Q ss_pred             ccccchhHHHHHHhhCCC--CCceeeccCC----CCChHHHHHHHHHhcCCCcccCCCchHHHHhhHhhhccccccCCCc
Q 039707            2 LLASKSAKVAAILDENPN--QDLSYFLRDI----SPDTETFELVLRFCHGFEPQISTENVIPIIGLADYLEMTEAHCRNN   75 (536)
Q Consensus         2 ~L~srSg~l~rli~~~~~--~~~~i~l~df----PGGaeaFEl~akFCYG~~i~lt~~NVa~LrCAAeyLeMtE~~~~~N   75 (536)
                      +|+++|.|++.++...-.  ....|.|+++    .-.+++|+.+.+|+|++++.+++.||..|..||.+|+|++      
T Consensus        53 vLaa~S~yF~~mf~~~~~e~~~~~i~l~~~~~~~~v~~~~f~~ll~~~Ytg~~~i~~~~v~~ll~~A~~l~i~~------  126 (279)
T 3i3n_A           53 VLAAATEYFTPLLSGQFSESRSGRVEMRKWSSEPGPEPDTVEAVIEYMYTGRIRVSTGSVHEVLELADRFLLIR------  126 (279)
T ss_dssp             HHHHHCTTSGGGCCC--------EEECCCCSSTTCSCHHHHHHHHHHHHHSEEEEETTTHHHHHHHHHHTTCHH------
T ss_pred             HHHHcCHHHHHHhcCCCccccCCeEEeccccccCCCCHHHHHHHHHhhCcCCcccCHHHHHHHHHHHHHHCcHH------
Confidence            578899999999875421  3357888877    4478999999999999999999999999999999999985      


Q ss_pred             hHHHHHHHhhhccCCChHHHHHHHHHhhhhhhhhhhhc---hHHHHHHHHHHHHcCCCCCCCCCCCCCCCCCCCCCcccc
Q 039707           76 LLRRALIFFEQEVLPSWNETIKALRVADDFLQQAVQLG---LVDACFRSLIEKAVADPHLLGAPMKNLSCDEDSEDADDA  152 (536)
Q Consensus        76 Li~ktE~FL~~~vl~sW~dsi~vLksce~llp~AE~l~---Iv~RCidsla~ka~~d~~~~~~p~~~~~s~~~~~~~~~~  152 (536)
                      |....+.||.+.+-.         .+|-.++.+|+..+   +.++|.+-|+.....   .                    
T Consensus       127 L~~~c~~~L~~~l~~---------~n~~~i~~~A~~~~~~~L~~~~~~~i~~~f~~---v--------------------  174 (279)
T 3i3n_A          127 LKEFCGEFLKKKLHL---------SNCVAIHSLAHMYTLSQLALKAADMIRRNFHK---V--------------------  174 (279)
T ss_dssp             HHHHHHHHHHHHCCT---------TTHHHHHHHHHHTTCHHHHHHHHHHHHHTHHH---H--------------------
T ss_pred             HHHHHHHHHHHcCCc---------chHHHHHHHHHHcCcHHHHHHHHHHHHHHHHH---H--------------------
Confidence            999999999885433         24556666777665   567777777654410   0                    


Q ss_pred             CCCcccCCCCCCCceeeecccCChHHHHHHHHHHHhCCCC-hhhHHHHHHHHHHhhhcCCCCCCCcccchhhhhhhhHHH
Q 039707          153 YRPNARRKLFVIDWKSEDLTVLSLQLFDAIIRSMNQHGVP-PEFVASSVCQYTKRWVLSSTVGDETVSIYKRKTQRDVLE  231 (536)
Q Consensus       153 ~~~~~~~~~~~~dWW~eDl~~L~~~lf~rvI~am~~~g~~-~~~i~~~l~~Ya~k~lp~~~~~~~~~~~~~~~~qr~llE  231 (536)
                                   +-.++...|+.+....++..=.- .++ .+.|-.+++.|++.-.               ..++..+.
T Consensus       175 -------------~~~~~f~~L~~~~l~~lL~~d~L-~v~sE~~vf~av~~W~~~~~---------------~~r~~~~~  225 (279)
T 3i3n_A          175 -------------IQDEEFYTLPFHLIRDWLSDLEI-TVDSEEVLFETVLKWVQRNA---------------EERERYFE  225 (279)
T ss_dssp             -------------TTSSGGGGSCHHHHHHHHTCSSC-CCSCHHHHHHHHHHHHHTTH---------------HHHTTTHH
T ss_pred             -------------hcCcChhcCCHHHHHHHhcCcCC-CCCCHHHHHHHHHHHHHcCH---------------HHHHHHHH
Confidence                         00145567888877776653111 133 4456666666655321               12223334


Q ss_pred             HHHhhCCCCCCCcchHHHHHHHHHHHhhcCCHHHHHHHHHHH
Q 039707          232 AVEKLLPYERGLVPCTLLFEMLRYAIVLEASSDCRTGFEIRI  273 (536)
Q Consensus       232 ~iv~LLP~~k~~vsc~fLf~LLR~A~~l~as~~cr~~LE~rI  273 (536)
                      .+...+-.  ..+|..+|..+++..-.+..++.|+.-+..-.
T Consensus       226 ~ll~~VRf--~l~~~~~L~~~v~~~~l~~~~~~c~~~l~ea~  265 (279)
T 3i3n_A          226 ELFKLLRL--SQMKPTYLTRHVKPERLVANNEVCVKLVADAV  265 (279)
T ss_dssp             HHHTTSCG--GGSCHHHHHHTTTTSHHHHTCHHHHHHHHHHH
T ss_pred             HHHHhcCC--CCCCHHHHHHHhhccchhcCCHHHHHHHHHHH
Confidence            44333211  55889999999988888888999988776543

PyMOL of 3i3n

>3hve_A Gigaxonin; ubiquitin, cytoplasm, cytoskeleton, disease mutation, kelch repeat, neurodegeneration, phosphoprotein, polymorphism, UBL conjugation; 2.80A {Homo sapiens} PDB: 3hve_B	Back alignment and structure

>2vpk_A Myoneurin; transcription regulation, transcription, metal-binding, alternative splicing, zinc, nucleus, BTB domain, zinc-finger, DNA-binding; 2.00A {Homo sapiens}	Back alignment and structure

>2z8h_A Transcription regulator protein BACH1; BTB, POZ, disulfide bond, activator, DNA-binding, nucleus, phosphorylation, repressor; 2.50A {Mus musculus}	Back alignment and structure

>3b84_A Zinc finger and BTB domain-containing protein 48; krueppel related zinc finger protein 3, HKR3, ZBTB48, Z finger, oncogene; 1.74A {Homo sapiens}	Back alignment and structure

>1buo_A POZ domain, protein (promyelocytic leukemia zinc finger prote; protein-protein interaction domain, transcriptional represso finger protein; 1.90A {Homo sapiens} SCOP: d.42.1.1 PDB: 1cs3_A	Back alignment and structure

>2vkp_A BTB/POZ domain-containing protein 6; protein-binding; 1.9A {Homo sapiens}	Back alignment and structure

>3htm_A Speckle-type POZ protein; BTB, SPOP, ubiquitin, ligase, nucleus, UBL conjugation pathway, protein binding; 2.50A {Homo sapiens}	Back alignment and structure

>2if5_A Zinc finger and BTB domain-containing protein 7A; POZ domain, POK, proto oncogene, transcription F transcription; 2.00A {Homo sapiens} PDB: 2nn2_A	Back alignment and structure

>2ppi_A Gigaxonin; BTB domain, protein degradation, structural genomics, struct genomics consortium, SGC, structural protein; 2.40A {Homo sapiens}	Back alignment and structure

>2yy9_A Zinc finger and BTB domain-containing protein 48; mouse, HKR3, structural genomics, NPPSFA; 2.60A {Mus musculus}	Back alignment and structure

>3ga1_A Nucleus accumbens-associated protein 1; BTB/POZ domain, phosphoprotein, repressor, transcri transcription regulation; 2.10A {Homo sapiens}	Back alignment and structure

>2q81_A MIZ-1 protein; BTB/POZ domain, transcription; HET: PG4; 2.10A {Homo sapiens} PDB: 3m52_A	Back alignment and structure

>3ohu_A Transcription regulator protein BACH2; BTB/POZ domain; 2.10A {Homo sapiens} SCOP: d.42.1.0 PDB: 3ohv_A	Back alignment and structure

>1r29_A B-cell lymphoma 6 protein; BTB domain, transcriptional repression, transcription; 1.30A {Homo sapiens} SCOP: d.42.1.1 PDB: 1r28_A 1r2b_A 3bim_A 3lbz_A* 3e4u_A	Back alignment and structure

>4eoz_A Speckle-type POZ protein; E3 ubiquitin ligase, nucleus, protein binding; 2.40A {Homo sapiens}	Back alignment and structure

>2ihc_A Transcription regulator protein BACH1; BRIC-A-BRAC domain,transcription factor, protein-PROT interaction; 2.44A {Homo sapiens}	Back alignment and structure

>3m5b_A Zinc finger and BTB domain-containing protein 32; POZ domain, BTB/POZ domain, ZBTB32, zinc finger domain-containing protein 32; 2.00A {Homo sapiens} SCOP: d.42.1.0	Back alignment and structure

>3fkc_A Transcriptional regulator kaiso; zinc finger and BTB domain containing 33, kaiso transcriptio ZNF-kaiso, ZNF348,wugsc:H_DJ525N14.1; 1.70A {Homo sapiens} PDB: 3m4t_A 3m8v_A	Back alignment and structure

>3hqi_A Speckle-type POZ protein; SPOP, ubiquitin, puckered, nucleus, UBL conjugation pathway, protein binding, ligase; 2.62A {Homo sapiens} PDB: 3hu6_A	Back alignment and structure

>4ajy_C Transcription elongation factor B polypeptide 1; E3 ubiquitin ligase, transcription factor, hypoxic signaling transcription; 1.73A {Homo sapiens} PDB: 2izv_C 3dcg_B 3zrc_B* 3zrf_B 3ztc_B* 3ztd_B* 3zun_B* 2c9w_C 4awj_B* 4b95_B* 4b9k_B* 2fnj_C 1lqb_B 1lm8_C 2jz3_C 2xai_B 4b9k_E*	Back alignment and structure

>1fs1_B SKP1, cyclin A/CDK2-associated P45; F-BOX, LRR, leucine-rich repeat, SCF, ubiquitin, ubiquitin protein ligase; 1.80A {Homo sapiens} SCOP: a.157.1.1 d.42.1.1 PDB: 1fs2_B 1ldk_D	Back alignment and structure

>2p1m_A SKP1-like protein 1A; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_A* 2p1o_A* 2p1p_A* 2p1q_A* 3c6n_A* 3c6o_A* 3c6p_A* 3ogk_A* 3ogl_A* 3ogm_A*	Back alignment and structure

>3vmx_A Voltage-gated hydrogen channel 1; coiled-coil, ION channel, ION transport, membrane protein; 1.45A {Mus musculus}	Back alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	Probability
Query		536
d1buoa_		121	Promyelocytic leukaemia zinc finger (PLZF) protein	98.5
d1r29a_		122	B-cell lymphoma 6 (Bcl6) protein BTB domain {Human	98.49

>d1buoa_ d.42.1.1 (A:) Promyelocytic leukaemia zinc finger (PLZF) protein BTB domain {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

class: Alpha and beta proteins (a+b)
fold: POZ domain
superfamily: POZ domain
family: BTB/POZ domain
domain: Promyelocytic leukaemia zinc finger (PLZF) protein BTB domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.50  E-value=4.3e-08  Score=84.59  Aligned_cols=75  Identities=24%  Similarity=0.311  Sum_probs=67.1

Q ss_pred             ccccchhHHHHHHhhCCCCCceeeccCCCCChHHHHHHHHHhcCCCcccCCCchHHHHhhHhhhccccccCCCchHHHHH
Q 039707            2 LLASKSAKVAAILDENPNQDLSYFLRDISPDTETFELVLRFCHGFEPQISTENVIPIIGLADYLEMTEAHCRNNLLRRAL   81 (536)
Q Consensus         2 ~L~srSg~l~rli~~~~~~~~~i~l~dfPGGaeaFEl~akFCYG~~i~lt~~NVa~LrCAAeyLeMtE~~~~~NLi~ktE   81 (536)
                      +|+++|.+++.++....   -++.+++++  +++|+.+.+|+|.+++++++.||..+..||++|+|.+      |....+
T Consensus        46 vLaa~S~~F~~lf~~~~---~~i~~~~v~--~~~f~~ll~~~Ytg~i~l~~~~v~~ll~~A~~l~~~~------L~~~C~  114 (121)
T d1buoa_          46 VLACTSKMFEILFHRNS---QHYTLDFLS--PKTFQQILEYAYTATLQAKAEDLDDLLYAAEILEIEY------LEEQCL  114 (121)
T ss_dssp             HHHHHCHHHHHHTTSCC---SEEEECSSC--HHHHHHHHHHHHHSCCCCCGGGHHHHHHHHHHHTCHH------HHHHHH
T ss_pred             HhcccChhhhhhccCcc---ceeecCCCC--HHHHHHHHHheEccccCCcHHHHHHHHHHHHHhCCHH------HHHHHH
Confidence            58899999999997543   368888875  8999999999998899999999999999999999986      999999


Q ss_pred             HHhhhc
Q 039707           82 IFFEQE   87 (536)
Q Consensus        82 ~FL~~~   87 (536)
                      .||..+
T Consensus       115 ~~L~~i  120 (121)
T d1buoa_         115 KMLETI  120 (121)
T ss_dssp             HHHHHH
T ss_pred             HHHHhC
Confidence            999763

PyMOL of d1buoa_

>d1r29a_ d.42.1.1 (A:) B-cell lymphoma 6 (Bcl6) protein BTB domain {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure