Citrus Sinensis ID: 039721

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490---
MEIVCPIDEKCASEVSCLLRPPSPLQVQEYFDQLISTRNCHGIKVKQISERGKGVYAGMDFQEEELVLKDQMLAGNQHSSNKMDCLVCSFCFRFIGSIELQIGRRLYLQSLGDSANDKCHMGSSSHTSEDCYNTDSSDMEDDSYMKNHEDYGNCAPGSSKDNISLPKGFIESLMNGELELPFSDKFPLPSTIPCPGGCGEAYYCSKSCAEADWELFHSLLCTGERSKALSRAALLKFIEHANGTNDIFLLAAKVICSIILRYRKLKAAHLEEQGKTNANSKSSNLSLLLEAWKPISIGYKRRWWDCIALPDDVDSSDEASFRMKIRELAFTSLQLLKAAIFDSECEPLFSLEIYGHIIGMFELNNLDLVVASPVEDYFLYIDDLLHGEKKEAEKITRPILDALGDDYSICCQGTAFFPLQSCMNHSCCPNGKAFKREEDRDGQAVIIAQRPICKGEEVTISYIDEDLPYGERQTLLADYGFRCSCPKCLEEEP
cccccccccHHHHHHHHccccccHHHHHHHHHHHHcccccccEEEEEccccccEEEEccccccccEEEEcccccccccccccccccccccHHHccccHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHccccccccccccccccccccccccccccccccHHHHHHHHHHccccccccccccHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccHHHHHHHccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHcccccccccccHHHHHHHHHHccHHHHHHHHHHHHccccccccccccccEEEEcccHHcccccccccccccccccccccEEEEEEccccccccEEEEccccccccHHHHHHHHHccccEEcccccccccc
ccccccccHHHHHHHHHHcccccHHHHHHHHHHHHHHcccccEEEEccccccEEEEEccccccccEEEEcccEEEEEcccccccEEEHHHHHHHHHHHHHHHHHHHHHHHccccccHHccccccccccccccccccccHHHHHHccccccccccccccccccccccHHHHHHHHcccccccccccccccccccccccccEEEEEcHHHHHHHHHHHHcEcccccccccccHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHccccccccccHHHHHccccccccccHHHHHHHHHHHHHHHHHHHHHHHccHHHHccccHHHHHHHHHHHHHccccccccccHHHHHHHHHHccccHHHHHHHHHHHHHHHHcccccccccccEHcHHHHHcccccccccEEEEcccccccEEEEEEEEEcccccEEEEEEEcccccHHHHHHHHHHcccEEcccHHccccc
meivcpidekcasevscllrppsplqVQEYFDQLISTRNchgikvkqisergkgvyagmdfqEEELVLKDQMlagnqhssnkmdcLVCSFCFRFIGSIELQIGRRLYLQSlgdsandkchmgssshtsedcyntdssdmeddsymknhedygncapgsskdnislpkGFIESLMngelelpfsdkfplpstipcpggcgeayycskscaEADWELFHSLLCTGERSKALSRAALLKFIEHANGTNDIFLLAAKVICSIILRYRKLKAAHLEeqgktnansksSNLSLLLEAWkpisigykrrwwdcialpddvdssdeASFRMKIRELAFTSLQLLKAAIfdseceplfsleIYGHIIGMfelnnldlvvaspvedYFLYIDDLLHGEKKEAEKITRPILDalgddysiccqgtaffplqscmnhsccpngkafkreedrdgQAVIIaqrpickgeevtisyidedlpygerqtlladygfrcscpkcleeep
meivcpidekcasevscLLRPPSPLQVQEYFDQLISTRNCHGIKVKQISERGKGVYAGMDFQEEELVLKDQMLAGNQHSSNKMDCLVCSFCFRFIGSIELQIGRRLYLQSLGDSANDKchmgssshtsedcynTDSSDMEDDSYMKNHEDYGNCAPGSSKDNISLPKGFIESLMNGELELPFSDKFPLPSTIPCPGGCGEAYYCSKSCAEADWELFHSLLCTGERSKALSRAALLKFIEHANGTNDIFLLAAKVICSIILRYRKLKAAHLeeqgktnanskssnlSLLLEAWKPISIGYKRRWWDCIALPDDVDSSDEASFRMKIRELAFTSLQLLKAAIFDSECEPLFSLEIYGHIIGMFELNNLDLVVASPVEDYFLYIDDLLHGEKKEAEKITRPILDALGDDYSICCQGTAFFPLQSCMNHSCCPNGKAFKREEDRDGQAviiaqrpickgeeVTISYIDEDLPYGERQTLLADYGFRCSCPKCLEEEP
MEIVCPIDEKCASEVSCLLRPPSPLQVQEYFDQLISTRNCHGIKVKQISERGKGVYAGMDFQEEELVLKDQMLAGNQHSSNKMDCLVCSFCFRFIGSIELQIGRRLYLQSLGDSANDKCHMGSSSHTSEDCYNTDSSDMEDDSYMKNHEDYGNCAPGSSKDNISLPKGFIESLMNGELELPFSDKFPLPSTIPCPGGCGEAYYCSKSCAEADWELFHSLLCTGERSKALSRAALLKFIEHANGTNDIFLLAAKVICSIILRYRKLKAAHLEEQGKTNAnskssnlslllEAWKPISIGYKRRWWDCIALPDDVDSSDEASFRMKIRELAFTSLQLLKAAIFDSECEPLFSLEIYGHIIGMFELNNLDLVVASPVEDYFLYIDDLLHGEKKEAEKITRPILDALGDDYSICCQGTAFFPLQSCMNHSCCPNGKAFKREEDRDGQAVIIAQRPICKGEEVTISYIDEDLPYGERQTLLADYGFRCSCPKCLEEEP
***VCPIDEKCASEVSCLLRPPSPLQVQEYFDQLISTRNCHGIKVKQISERGKGVYAGMDFQEEELVLKDQMLAGN***SNKMDCLVCSFCFRFIGSIELQIGRRLYLQSL********************************************************GFIESLMNGELELPFSDKFPLPSTIPCPGGCGEAYYCSKSCAEADWELFHSLLCTGERSKALSRAALLKFIEHANGTNDIFLLAAKVICSIILRYRKLKAAH***************LSLLLEAWKPISIGYKRRWWDCIALPDDVDSSDEASFRMKIRELAFTSLQLLKAAIFDSECEPLFSLEIYGHIIGMFELNNLDLVVASPVEDYFLYIDDLLHGEKKEAEKITRPILDALGDDYSICCQGTAFFPLQSCMNHSCCPNGKAFKR**DRDGQAVIIAQRPICKGEEVTISYIDEDLPYGERQTLLADYGFRCSCPKCL****
***VCP*DEKCASEVSCLLRPPSPLQVQEYFDQLISTRNCHGIKVKQISERGKGVYAGMDFQEEELVLKDQMLAGNQHSSNKMDCLVCSFCFRFIGSIELQIGRRLYLQ*********************C**TDSSDMEDDSYMKNHEDY*************LPKGFIESLMNGELELPFSDKFPLPSTIPCPGGCGEAYYCSKSCAEADWELFHSLLCTGERSKALSRAALLKFIEHANGTNDIFLLAAKVICSIILRYRKL********************SLLLEAWKPISIGYKRRWWDCIALPDDVDSSDEASFRMKIRELAFTSLQLLKAAIFDSECEPLFSLEIYGHIIGMFELNNLDLVVASPVEDYFLYIDDLLHGEKKEAEKITRPILDALGDDYSICCQGTAFFPLQSCMNHSCCPNGKAFKREEDRDGQAVIIAQRPICKGEEVTISYIDEDLPYGERQTLLADYGFRCSCPKCLE***
MEIVCPIDEKCASEVSCLLRPPSPLQVQEYFDQLISTRNCHGIKVKQISERGKGVYAGMDFQEEELVLKDQMLAGNQHSSNKMDCLVCSFCFRFIGSIELQIGRRLYLQSLGDSAND********************DMEDDSYMKNHEDYGNCAPGSSKDNISLPKGFIESLMNGELELPFSDKFPLPSTIPCPGGCGEAYYCSKSCAEADWELFHSLLCTGERSKALSRAALLKFIEHANGTNDIFLLAAKVICSIILRYRKLKAAHLEEQGKTNANSKSSNLSLLLEAWKPISIGYKRRWWDCIALPDDVDSSDEASFRMKIRELAFTSLQLLKAAIFDSECEPLFSLEIYGHIIGMFELNNLDLVVASPVEDYFLYIDDLLHGEKKEAEKITRPILDALGDDYSICCQGTAFFPLQSCMNHSCCPNGKAFKREEDRDGQAVIIAQRPICKGEEVTISYIDEDLPYGERQTLLADYGFRCSCPKCLEEEP
*EIVCPIDEKCASEVSCLLRPPSPLQVQEYFDQLISTRNCHGIKVKQISERGKGVYAGMDFQEEELVLKDQMLAGNQHSSNKMDCLVCSFCFRFIGSIELQIGRRLYLQSLG****************************************************LPKGFIESLMNGELELPFSDKFPLPSTIPCPGGCGEAYYCSKSCAEADWELFHSLLCTGERSKALSRAALLKFIEHANGTNDIFLLAAKVICSIILRYRKLKAAHLEEQGKTN*NSKSSNLSLLLEAWKPISIGYKRRWWDCIALPDDVDSSDEASFRMKIRELAFTSLQLLKAAIFDSECEPLFSLEIYGHIIGMFELNNLDLVVASPVEDYFLYIDDLLHGEKKEAEKITRPILDALGDDYSICCQGTAFFPLQSCMNHSCCPNGKAFKREEDRDGQAVIIAQRPICKGEEVTISYIDEDLPYGERQTLLADYGFRCSCPKCL****
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MEIVCPIDEKCASEVSCLLRPPSPLQVQEYFDQLISTRNCHGIKVKQISERGKGVYAGMDFQEEELVLKDQMLAGNQHSSNKMDCLVCSFCFRFIGSIELQIGRRLYLQSLGDSANDKCHMGSSSHTSEDCYNTDSSDMEDDSYMKNHEDYGNCAPGSSKDNISLPKGFIESLMNGELELPFSDKFPLPSTIPCPGGCGEAYYCSKSCAEADWELFHSLLCTGERSKALSRAALLKFIEHANGTNDIFLLAAKVICSIILRYRKLKAAHLEEQGKTNANSKSSNLSLLLEAWKPISIGYKRRWWDCIALPDDVDSSDEASFRMKIRELAFTSLQLLKAAIFDSECEPLFSLEIYGHIIGMFELNNLDLVVASPVEDYFLYIDDLLHGEKKEAEKITRPILDALGDDYSICCQGTAFFPLQSCMNHSCCPNGKAFKREEDRDGQAVIIAQRPICKGEEVTISYIDEDLPYGERQTLLADYGFRCSCPKCLEEEP
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query493 2.2.26 [Sep-21-2011]
Q5PP37473 Histone-lysine N-methyltr yes no 0.949 0.989 0.666 0.0
Q6GPQ4421 SET and MYND domain-conta N/A no 0.202 0.237 0.373 1e-08
Q3TYX3416 SET and MYND domain-conta yes no 0.312 0.370 0.289 2e-08
A5DQN2483 Potential protein lysine N/A no 0.172 0.175 0.372 1e-07
Q6GMV2418 SET and MYND domain-conta yes no 0.160 0.188 0.411 1e-07
Q5ZIZ2420 SET and MYND domain-conta yes no 0.517 0.607 0.234 1e-07
Q54D67343 SET and MYND domain-conta no no 0.434 0.623 0.266 2e-06
Q557F7386 SET and MYND domain-conta no no 0.245 0.313 0.335 2e-06
Q7XJS0 480 Histone-lysine N-methyltr no no 0.148 0.152 0.410 3e-06
Q5A1M3473 Potential protein lysine N/A no 0.182 0.190 0.344 6e-06
>sp|Q5PP37|ATXR2_ARATH Histone-lysine N-methyltransferase ATXR2 OS=Arabidopsis thaliana GN=ATXR2 PE=2 SV=1 Back     alignment and function desciption
 Score =  646 bits (1666), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 328/492 (66%), Positives = 386/492 (78%), Gaps = 24/492 (4%)

Query: 1   MEIVCPIDEKCASEVSCLLRP-PSPLQVQEYFDQLISTRNCHGIKVKQISERGKGVYAGM 59
           M+ V   DE  A++V+ LL P P+P Q+QEYF++LI++R C+GI+VK     GKGVYA  
Sbjct: 1   MDSVYKTDENFAADVAALLAPLPTP-QLQEYFNKLITSRRCNGIEVKNNGTIGKGVYANS 59

Query: 60  DFQEEELVLKDQMLAGNQHSSNKMDCLVCSFCFRFIGSIELQIGRRLYLQSLGDSANDKC 119
           +F E+EL+LKD++L G QHSSNK+DCLVCSFCFRFIGSIE QIGR+LY ++LG S     
Sbjct: 60  EFDEDELILKDEILVGIQHSSNKVDCLVCSFCFRFIGSIEKQIGRKLYFKNLGVSG---- 115

Query: 120 HMGSSSHTSEDCYNTDSSDMEDDSYMKNHEDYGNCAPGSSKDNISLPKGFIESLMNGELE 179
                      C + DSS  E+D  +K + +   C  GSS  + +LP+G + SLMNGE+ 
Sbjct: 116 -----------CCDDDSS--EEDECVKYNGNEEQCG-GSSSSHNTLPEGVVSSLMNGEMA 161

Query: 180 LPFSDKFPLPSTIPCPGGCGEAYYCSKSCAEADWELFHSLLCTGERSKALSRAALLKFIE 239
           LP +DKFPLPS + CPGGC EA+YCS+SCA ADWE  HSLLCTGERS+++SR AL +FI+
Sbjct: 162 LPHTDKFPLPSPLSCPGGCQEAFYCSESCAAADWESSHSLLCTGERSESISREALGEFIK 221

Query: 240 HANGTNDIFLLAAKVICSIILRYRKLKAAHLEEQGKTNANSKSSNLSLLLEAWKPISIGY 299
           HAN TNDIFLLAAK I   ILRYRKLKA H++++ K +   +S    LLLEAWKP+SIGY
Sbjct: 222 HANDTNDIFLLAAKAIAFTILRYRKLKAEHVDKKAKQSEPKQS----LLLEAWKPVSIGY 277

Query: 300 KRRWWDCIALPDDVDSSDEASFRMKIRELAFTSLQLLKAAIFDSECEPLFSLEIYGHIIG 359
           KRRWWDCIALPDDVD +DE +FRM+I+ LA TSL+LLK AIFD ECE LFSLEIYG+IIG
Sbjct: 278 KRRWWDCIALPDDVDPTDEGAFRMQIKNLACTSLELLKIAIFDKECEALFSLEIYGNIIG 337

Query: 360 MFELNNLDLVVASPVEDYFLYIDDLLHGEKKEAEKITRPILDALGDDYSICCQGTAFFPL 419
           MFELNNLDLVVASPVEDYFLYIDDL   EK+E E+ITRP LDALGD+YS CCQGTAFFPL
Sbjct: 338 MFELNNLDLVVASPVEDYFLYIDDLPDAEKEETEEITRPFLDALGDEYSDCCQGTAFFPL 397

Query: 420 QSCMNHSCCPNGKAFKREEDRDGQAVIIAQRPICKGEEVTISYIDEDLPYGERQTLLADY 479
           QSCMNHSCCPN KAFKREEDRDGQAVIIA R I K EEVTISYIDE+LPY ERQ LLADY
Sbjct: 398 QSCMNHSCCPNAKAFKREEDRDGQAVIIALRRISKNEEVTISYIDEELPYKERQALLADY 457

Query: 480 GFRCSCPKCLEE 491
           GF C C KCLE+
Sbjct: 458 GFSCKCSKCLED 469
Histone methyltransferase.
Arabidopsis thaliana (taxid: 3702)
EC: 2EC: .EC: 1EC: .EC: 1EC: .EC: 4EC: 3
>sp|Q6GPQ4|SMYD5_XENLA SET and MYND domain-containing protein 5 OS=Xenopus laevis GN=smyd5 PE=2 SV=1 Back     alignment and function description
>sp|Q3TYX3|SMYD5_MOUSE SET and MYND domain-containing protein 5 OS=Mus musculus GN=Smyd5 PE=2 SV=2 Back     alignment and function description
>sp|A5DQN2|SET5_PICGU Potential protein lysine methyltransferase SET5 OS=Meyerozyma guilliermondii (strain ATCC 6260 / CBS 566 / DSM 6381 / JCM 1539 / NBRC 10279 / NRRL Y-324) GN=SET5 PE=3 SV=2 Back     alignment and function description
>sp|Q6GMV2|SMYD5_HUMAN SET and MYND domain-containing protein 5 OS=Homo sapiens GN=SMYD5 PE=1 SV=2 Back     alignment and function description
>sp|Q5ZIZ2|SMYD5_CHICK SET and MYND domain-containing protein 5 OS=Gallus gallus GN=SMYD5 PE=2 SV=1 Back     alignment and function description
>sp|Q54D67|Y2454_DICDI SET and MYND domain-containing protein DDB_G0292454 OS=Dictyostelium discoideum GN=DDB_G0292454 PE=3 SV=1 Back     alignment and function description
>sp|Q557F7|Y3589_DICDI SET and MYND domain-containing protein DDB_G0273589 OS=Dictyostelium discoideum GN=DDB_G0273589 PE=3 SV=1 Back     alignment and function description
>sp|Q7XJS0|ASHR1_ARATH Histone-lysine N-methyltransferase ASHR1 OS=Arabidopsis thaliana GN=ASHR1 PE=2 SV=2 Back     alignment and function description
>sp|Q5A1M3|SET5_CANAL Potential protein lysine methyltransferase SET5 OS=Candida albicans (strain SC5314 / ATCC MYA-2876) GN=SET5 PE=3 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query493
225447338495 PREDICTED: histone-lysine N-methyltransf 1.0 0.995 0.721 0.0
356543740484 PREDICTED: histone-lysine N-methyltransf 0.977 0.995 0.703 0.0
449519020493 PREDICTED: histone-lysine N-methyltransf 0.995 0.995 0.694 0.0
449468333493 PREDICTED: histone-lysine N-methyltransf 0.995 0.995 0.694 0.0
297739311464 unnamed protein product [Vitis vinifera] 0.937 0.995 0.698 0.0
297835172471 SET domain-containing protein [Arabidops 0.947 0.991 0.674 0.0
42565094473 histone-lysine N-methyltransferase ATXR2 0.949 0.989 0.666 0.0
11994649565 unnamed protein product [Arabidopsis tha 0.949 0.828 0.661 0.0
224132628398 SET domain protein [Populus trichocarpa] 0.801 0.992 0.668 1e-165
356547069445 PREDICTED: histone-lysine N-methyltransf 0.864 0.957 0.662 1e-163
>gi|225447338|ref|XP_002274324.1| PREDICTED: histone-lysine N-methyltransferase ATXR2-like [Vitis vinifera] Back     alignment and taxonomy information
 Score =  718 bits (1854), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 357/495 (72%), Positives = 402/495 (81%), Gaps = 2/495 (0%)

Query: 1   MEIVCPIDEKCASEVSCLLRPPSPLQVQEYFDQLISTRNCHGIKVKQISERGKGVYAGMD 60
           ME +CPID + + E+S LL+PP   Q+QEYFD LI TR   G+KVK   E GKGVYA  D
Sbjct: 1   MEGICPIDSQFSHEISALLKPPPAHQLQEYFDNLIRTRQYLGLKVKHDGEFGKGVYADSD 60

Query: 61  FQEEELVLKDQMLAGNQHSSNKMDCLVCSFCFRFIGSIELQIGRRLYLQSLGDSANDKCH 120
           F E ELVLKDQML G QHSSNK++CLVC FCFRFIGSIELQIGRRLYLQ LG S ++ C 
Sbjct: 61  FGEGELVLKDQMLVGAQHSSNKINCLVCGFCFRFIGSIELQIGRRLYLQGLGVSTSNGCG 120

Query: 121 MGSSSHTSEDCYNTDSSDMEDDSYMKNHEDYGNCAPGSSKDNISLPKGFIESLMNGELEL 180
             + SH S D    DSS+ ED+ YM++H++ G CA  SSKD + LPKG +ESLMNGEL L
Sbjct: 121 RETFSHNSHDHCQVDSSEDEDNCYMEDHDELGECASSSSKDKVPLPKGVVESLMNGELAL 180

Query: 181 PFSDKFPLPSTIPCPGGCGEAYYCSKSCAEADWELFHSLLCTGERSKALSRAALLKFIEH 240
           P+  +FPLPS I C GGCGEAYYCSK CAEADWE  HSLLCTGE+S+++ R AL KFI+H
Sbjct: 181 PYPKEFPLPSAIACSGGCGEAYYCSKLCAEADWESSHSLLCTGEKSESICREALSKFIQH 240

Query: 241 ANGTNDIFLLAAKVICSIILRYRKLKAAHLEEQGKTNANS--KSSNLSLLLEAWKPISIG 298
           AN TNDIFLLAAKVIC  ILRY+KLK AHL+EQ K  +    K+ +L LLLEAWKPIS+G
Sbjct: 241 ANETNDIFLLAAKVICFTILRYKKLKKAHLKEQEKYTSAIVLKNGDLPLLLEAWKPISMG 300

Query: 299 YKRRWWDCIALPDDVDSSDEASFRMKIRELAFTSLQLLKAAIFDSECEPLFSLEIYGHII 358
           +K+RWWDCIALPDDV S DEA+FR +I+ELAFTSL+LLK AIF   CEPLFSLEIYGHII
Sbjct: 301 FKKRWWDCIALPDDVHSCDEAAFRAQIKELAFTSLKLLKEAIFCKGCEPLFSLEIYGHII 360

Query: 359 GMFELNNLDLVVASPVEDYFLYIDDLLHGEKKEAEKITRPILDALGDDYSICCQGTAFFP 418
           GMFELNNLDLVVASPVEDYFLYIDDL + +KK+AE+ITR  LDALGDDYS+ CQGTAFFP
Sbjct: 361 GMFELNNLDLVVASPVEDYFLYIDDLPYPQKKKAEEITRQFLDALGDDYSVPCQGTAFFP 420

Query: 419 LQSCMNHSCCPNGKAFKREEDRDGQAVIIAQRPICKGEEVTISYIDEDLPYGERQTLLAD 478
           LQSCMNHSC PN KAFKREEDRDGQA IIA RPI K EEVTISYIDEDLP+ ERQ LLAD
Sbjct: 421 LQSCMNHSCYPNAKAFKREEDRDGQATIIALRPIFKEEEVTISYIDEDLPFDERQALLAD 480

Query: 479 YGFRCSCPKCLEEEP 493
           YGFRC CPKCLEEEP
Sbjct: 481 YGFRCKCPKCLEEEP 495

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|356543740|ref|XP_003540318.1| PREDICTED: histone-lysine N-methyltransferase ATXR2-like [Glycine max] Back     alignment and taxonomy information
>gi|449519020|ref|XP_004166533.1| PREDICTED: histone-lysine N-methyltransferase ATXR2-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|449468333|ref|XP_004151876.1| PREDICTED: histone-lysine N-methyltransferase ATXR2-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|297739311|emb|CBI28962.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|297835172|ref|XP_002885468.1| SET domain-containing protein [Arabidopsis lyrata subsp. lyrata] gi|297331308|gb|EFH61727.1| SET domain-containing protein [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|42565094|ref|NP_188819.2| histone-lysine N-methyltransferase ATXR2 [Arabidopsis thaliana] gi|75251251|sp|Q5PP37.1|ATXR2_ARATH RecName: Full=Histone-lysine N-methyltransferase ATXR2; AltName: Full=Protein SET DOMAIN GROUP 36; AltName: Full=Trithorax-related protein 2; Short=TRX-related protein 2 gi|56236050|gb|AAV84481.1| At3g21820 [Arabidopsis thaliana] gi|59958344|gb|AAX12882.1| At3g21820 [Arabidopsis thaliana] gi|62320769|dbj|BAD95436.1| hypothetical protein [Arabidopsis thaliana] gi|332643034|gb|AEE76555.1| histone-lysine N-methyltransferase ATXR2 [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|11994649|dbj|BAB02844.1| unnamed protein product [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|224132628|ref|XP_002327842.1| SET domain protein [Populus trichocarpa] gi|222837251|gb|EEE75630.1| SET domain protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|356547069|ref|XP_003541940.1| PREDICTED: histone-lysine N-methyltransferase ATXR2-like [Glycine max] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query493
TAIR|locus:2093059473 ATXR2 "histone-lysine N-methyl 0.718 0.748 0.703 1.6e-171
DICTYBASE|DDB_G0294595513 DDB_G0294595 "tetratricopeptid 0.288 0.276 0.301 1.2e-12
MGI|MGI:108048416 Smyd5 "SET and MYND domain con 0.312 0.370 0.289 4.1e-12
ZFIN|ZDB-GENE-040912-39453 smyd5 "SMYD family member 5" [ 0.308 0.335 0.275 1.7e-11
UNIPROTKB|Q6GMV2418 SMYD5 "SET and MYND domain-con 0.164 0.193 0.415 4.4e-11
UNIPROTKB|Q5ZIZ2420 SMYD5 "SET and MYND domain-con 0.308 0.361 0.287 1.7e-10
ASPGD|ASPL0000063173341 AN10915 [Emericella nidulans ( 0.152 0.219 0.419 1.3e-09
UNIPROTKB|E1C7E7 797 SMYD4 "SET and MYND domain-con 0.148 0.091 0.395 2.8e-09
UNIPROTKB|E2RQV8 432 SMYD2 "Uncharacterized protein 0.170 0.194 0.370 4.3e-09
UNIPROTKB|I6L9H7272 SMYD2 "SMYD2 protein" [Homo sa 0.170 0.308 0.370 2e-08
TAIR|locus:2093059 ATXR2 "histone-lysine N-methyltransferase ATXR2" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1328 (472.5 bits), Expect = 1.6e-171, Sum P(2) = 1.6e-171
 Identities = 254/361 (70%), Positives = 290/361 (80%)

Query:   131 CYNTDSSDMEDDSYMKNHEDYGNCAPGSSKDNISLPKGFIESLMNGELELPFSDKFPLPS 190
             C + DSS  E+D  +K + +   C  GSS  + +LP+G + SLMNGE+ LP +DKFPLPS
Sbjct:   116 CCDDDSS--EEDECVKYNGNEEQCG-GSSSSHNTLPEGVVSSLMNGEMALPHTDKFPLPS 172

Query:   191 TIPCPGGCGEAYYCSKSCAEADWELFHSLLCTGERSKALSRAALLKFIEHANGTNDIFLL 250
              + CPGGC EA+YCS+SCA ADWE  HSLLCTGERS+++SR AL +FI+HAN TNDIFLL
Sbjct:   173 PLSCPGGCQEAFYCSESCAAADWESSHSLLCTGERSESISREALGEFIKHANDTNDIFLL 232

Query:   251 AAKVICSIILRYRKLKAAHLEEQGKTNAXXXXXXXXXXXEAWKPISIGYKRRWWDCIALP 310
             AAK I   ILRYRKLKA H++++ K +            EAWKP+SIGYKRRWWDCIALP
Sbjct:   233 AAKAIAFTILRYRKLKAEHVDKKAKQSEPKQSLLL----EAWKPVSIGYKRRWWDCIALP 288

Query:   311 DDVDSSDEASFRMKIRELAFTSLQLLKAAIFDSECEPLFSLEIYGHIIGMFELNNLDLVV 370
             DDVD +DE +FRM+I+ LA TSL+LLK AIFD ECE LFSLEIYG+IIGMFELNNLDLVV
Sbjct:   289 DDVDPTDEGAFRMQIKNLACTSLELLKIAIFDKECEALFSLEIYGNIIGMFELNNLDLVV 348

Query:   371 ASPVEDYFLYIDDLLHGEKKEAEKITRPILDALGDDYSICCQGTAFFPLQSCMNHSCCPN 430
             ASPVEDYFLYIDDL   EK+E E+ITRP LDALGD+YS CCQGTAFFPLQSCMNHSCCPN
Sbjct:   349 ASPVEDYFLYIDDLPDAEKEETEEITRPFLDALGDEYSDCCQGTAFFPLQSCMNHSCCPN 408

Query:   431 GKAFKREEDRDGQAVIIAQRPICKGEEVTISYIDEDLPYGERQTLLADYGFRCSCPKCLE 490
              KAFKREEDRDGQAVIIA R I K EEVTISYIDE+LPY ERQ LLADYGF C C KCLE
Sbjct:   409 AKAFKREEDRDGQAVIIALRRISKNEEVTISYIDEELPYKERQALLADYGFSCKCSKCLE 468

Query:   491 E 491
             +
Sbjct:   469 D 469
GO:0005634 "nucleus" evidence=ISM
GO:0008150 "biological_process" evidence=ND
GO:0008270 "zinc ion binding" evidence=IEA
DICTYBASE|DDB_G0294595 DDB_G0294595 "tetratricopeptide-like helical domain-containing protein (TPR)" [Dictyostelium discoideum (taxid:44689)] Back     alignment and assigned GO terms
MGI|MGI:108048 Smyd5 "SET and MYND domain containing 5" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-040912-39 smyd5 "SMYD family member 5" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
UNIPROTKB|Q6GMV2 SMYD5 "SET and MYND domain-containing protein 5" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|Q5ZIZ2 SMYD5 "SET and MYND domain-containing protein 5" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
ASPGD|ASPL0000063173 AN10915 [Emericella nidulans (taxid:162425)] Back     alignment and assigned GO terms
UNIPROTKB|E1C7E7 SMYD4 "SET and MYND domain-containing protein 4" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
UNIPROTKB|E2RQV8 SMYD2 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|I6L9H7 SMYD2 "SMYD2 protein" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q5PP37ATXR2_ARATH2, ., 1, ., 1, ., 4, 30.66660.94920.9894yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer2.1.1.430.991
3rd Layer2.1.10.976

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query493
pfam00856113 pfam00856, SET, SET domain 2e-09
smart00317124 smart00317, SET, SET (Su(var)3-9, Enhancer-of-zest 2e-09
pfam0175339 pfam01753, zf-MYND, MYND finger 0.001
>gnl|CDD|216155 pfam00856, SET, SET domain Back     alignment and domain information 
 Score = 54.8 bits (132), Expect = 2e-09
 Identities = 16/40 (40%), Positives = 22/40 (55%)

Query: 423 MNHSCCPNGKAFKREEDRDGQAVIIAQRPICKGEEVTISY 462
           +NHSC PN +      +   + V+ A R I  GEE+TI Y
Sbjct: 73  INHSCEPNCEVRFVFVNGGDRIVVRALRDIKPGEELTIDY 112

SET domains are protein lysine methyltransferase enzymes. SET domains appear to be protein-protein interaction domains. It has been demonstrated that SET domains mediate interactions with a family of proteins that display similarity with dual-specificity phosphatases (dsPTPases). A subset of SET domains have been called PR domains. These domains are divergent in sequence from other SET domains, but also appear to mediate protein-protein interaction. The SET domain consists of two regions known as SET-N and SET-C. SET-C forms an unusual and conserved knot-like structure of probably functional importance. Additionally to SET-N and SET-C, an insert region (SET-I) and flanking regions of high structural variability form part of the overall structure. Length = 113
>gnl|CDD|214614 smart00317, SET, SET (Su(var)3-9, Enhancer-of-zeste, Trithorax) domain Back     alignment and domain information
>gnl|CDD|201954 pfam01753, zf-MYND, MYND finger Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 493
KOG2084 482 consensus Predicted histone tail methylase contain 99.55
PF00856162 SET: SET domain; InterPro: IPR001214 The SET domai 99.27
smart00317116 SET SET (Su(var)3-9, Enhancer-of-zeste, Trithorax) 99.11
KOG2589 453 consensus Histone tail methylase [Chromatin struct 98.44
PF0175337 zf-MYND: MYND finger; InterPro: IPR002893 Zinc fin 98.04
KOG4442 729 consensus Clathrin coat binding protein/Huntingtin 98.03
KOG10801005 consensus Histone H3 (Lys4) methyltransferase comp 97.93
COG2940480 Proteins containing SET domain [General function p 97.69
KOG1082364 consensus Histone H3 (Lys9) methyltransferase SUV3 97.16
KOG1337 472 consensus N-methyltransferase [General function pr 96.66
KOG10831306 consensus Putative transcription factor ASH1/LIN-5 96.49
KOG1085392 consensus Predicted methyltransferase (contains a 96.43
PF00856162 SET: SET domain; InterPro: IPR001214 The SET domai 96.23
smart00317116 SET SET (Su(var)3-9, Enhancer-of-zeste, Trithorax) 95.42
KOG11411262 consensus Predicted histone methyl transferase [Ch 95.4
KOG1079739 consensus Transcriptional repressor EZH1 [Transcri 95.36
KOG1338 466 consensus Uncharacterized conserved protein [Funct 94.32
KOG1710396 consensus MYND Zn-finger and ankyrin repeat protei 89.78
KOG1081463 consensus Transcription factor NSD1 and related SE 89.24
KOG1085392 consensus Predicted methyltransferase (contains a 85.37
>KOG2084 consensus Predicted histone tail methylase containing SET domain [Chromatin structure and dynamics] Back     alignment and domain information 
Probab=99.55  E-value=9.2e-14  Score=148.33  Aligned_cols=76  Identities=38%  Similarity=0.631  Sum_probs=66.7

Q ss_pred             cceeEeccccccCCCCCCCCceEeeeeecCCCeEEEEEcccCCCCC-eEEEeccCCCCCHHHHHHHHh-ccCeeEeCcCC
Q 039721          411 CQGTAFFPLQSCMNHSCCPNGKAFKREEDRDGQAVIIAQRPICKGE-EVTISYIDEDLPYGERQTLLA-DYGFRCSCPKC  488 (493)
Q Consensus       411 ~~G~gLy~~~S~~NHSC~PN~~~~~~~~~~~~~~~v~AlRdI~~GE-ELtiSYid~~~~~~~Rq~~L~-~y~F~C~C~rC  488 (493)
                      ..|.|+||..+++||||.||+.+.|    .+....+++...+.+++ ||+++|++..++...||..|+ .|.|.|.|+||
T Consensus       197 ~~~~~l~~~~~~~~hsC~pn~~~~~----~~~~~~~~~~~~~~~~~~~l~~~y~~~~~~~~~r~~~l~~~~~f~c~c~rc  272 (482)
T KOG2084|consen  197 FLGRGLFPGSSLFNHSCFPNISVIF----DGRGLALLVPAGIDAGEEELTISYTDPLLSTASRQKQLRQSKLFSCQCPRC  272 (482)
T ss_pred             cceeeecccchhcccCCCCCeEEEE----CCceeEEEeecccCCCCCEEEEeecccccCHHHHHHHHhhccceeeecCCC
Confidence            3799999999999999999999766    35566777777777776 999999999999999999997 58899999999


Q ss_pred             CC
Q 039721          489 LE  490 (493)
Q Consensus       489 ~~  490 (493)
                      .+
T Consensus       273 ~d  274 (482)
T KOG2084|consen  273 LD  274 (482)
T ss_pred             CC
Confidence            85

>PF00856 SET: SET domain; InterPro: IPR001214 The SET domain appears generally as one part of a larger multidomain protein, and recently there were described three structures of very different proteins with distinct domain compositions: Neurospora crassa DIM-5, a member of the Su(var) family of HKMTs which methylate histone H3 on lysine 9,human SET7 (also called SET9), which methylates H3 on lysine 4 and garden pea Rubisco LSMT, an enzyme that does not modify histones, but instead methylates lysine 14 in the flexible tail of the large subunit of the enzyme Rubisco Back     alignment and domain information
>smart00317 SET SET (Su(var)3-9, Enhancer-of-zeste, Trithorax) domain Back     alignment and domain information
>KOG2589 consensus Histone tail methylase [Chromatin structure and dynamics] Back     alignment and domain information
>PF01753 zf-MYND: MYND finger; InterPro: IPR002893 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule Back     alignment and domain information
>KOG4442 consensus Clathrin coat binding protein/Huntingtin interacting protein HIP1, involved in regulation of endocytosis [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG1080 consensus Histone H3 (Lys4) methyltransferase complex, subunit SET1 and related methyltransferases [Chromatin structure and dynamics; Transcription] Back     alignment and domain information
>COG2940 Proteins containing SET domain [General function prediction only] Back     alignment and domain information
>KOG1082 consensus Histone H3 (Lys9) methyltransferase SUV39H1/Clr4, required for transcriptional silencing [Chromatin structure and dynamics; Transcription] Back     alignment and domain information
>KOG1337 consensus N-methyltransferase [General function prediction only] Back     alignment and domain information
>KOG1083 consensus Putative transcription factor ASH1/LIN-59 [Transcription] Back     alignment and domain information
>KOG1085 consensus Predicted methyltransferase (contains a SET domain) [General function prediction only] Back     alignment and domain information
>PF00856 SET: SET domain; InterPro: IPR001214 The SET domain appears generally as one part of a larger multidomain protein, and recently there were described three structures of very different proteins with distinct domain compositions: Neurospora crassa DIM-5, a member of the Su(var) family of HKMTs which methylate histone H3 on lysine 9,human SET7 (also called SET9), which methylates H3 on lysine 4 and garden pea Rubisco LSMT, an enzyme that does not modify histones, but instead methylates lysine 14 in the flexible tail of the large subunit of the enzyme Rubisco Back     alignment and domain information
>smart00317 SET SET (Su(var)3-9, Enhancer-of-zeste, Trithorax) domain Back     alignment and domain information
>KOG1141 consensus Predicted histone methyl transferase [Chromatin structure and dynamics] Back     alignment and domain information
>KOG1079 consensus Transcriptional repressor EZH1 [Transcription] Back     alignment and domain information
>KOG1338 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>KOG1710 consensus MYND Zn-finger and ankyrin repeat protein [General function prediction only] Back     alignment and domain information
>KOG1081 consensus Transcription factor NSD1 and related SET domain proteins [Transcription] Back     alignment and domain information
>KOG1085 consensus Predicted methyltransferase (contains a SET domain) [General function prediction only] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query493
3s7b_A 433 Structural Basis Of Substrate Methylation And Inhib 2e-06
3rib_A 441 Human Lysine Methyltransferase Smyd2 In Complex Wit 3e-06
3tg4_A 433 Structure Of Smyd2 In Complex With Sam Length = 433 3e-06
3qwv_A 433 Crystal Structure Of Histone Lysine Methyltransfera 9e-06
3n71_A 490 Crystal Structure Of Cardiac Specific Histone Methy 3e-04
3ru0_A 438 Cocrystal Structure Of Human Smyd3 With Inhibitor S 7e-04
3oxf_A 436 Human Lysine Methyltransferase Smyd3 In Complex Wit 7e-04
3pdn_A 428 Crystal Structure Of Smyd3 In Complex With Methyltr 7e-04
3qwp_A 429 Crystal Structure Of Set And Mynd Domain Containing 7e-04
3oxg_A 464 Human Lysine Methyltransferase Smyd3 In Complex Wit 8e-04
>pdb|3S7B|A Chain A, Structural Basis Of Substrate Methylation And Inhibition Of Smyd2 Length = 433 Back     alignment and structure 
Iteration: 1

 Score = 50.1 bits (118), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 33/85 (38%), Positives = 43/85 (50%), Gaps = 5/85 (5%)
Query: 405 DDYSICCQGTAFFPLQSCMNHSCCPNGKAFKREEDRDGQAVIIAQRPICKGEEVTISYID 464
           +D  +   G+A FP  + MNHSCCPN     +    + +AV    + I  GEEV  SYID
Sbjct: 187 EDEELSHLGSAIFPDVALMNHSCCPNVIVTYKGTLAEVRAV----QEIKPGEEVFTSYID 242
Query: 465 EDLPYGERQTLLAD-YGFRCSCPKC 488
              P  +R   L D Y F C C +C
Sbjct: 243 LLYPTEDRNDRLRDSYFFTCECQEC 267
>pdb|3RIB|A Chain A, Human Lysine Methyltransferase Smyd2 In Complex With Adohcy Length = 441 Back     alignment and structure
>pdb|3TG4|A Chain A, Structure Of Smyd2 In Complex With Sam Length = 433 Back     alignment and structure
>pdb|3QWV|A Chain A, Crystal Structure Of Histone Lysine Methyltransferase Smyd2 In Complex With The Cofactor Product Adohcy Length = 433 Back     alignment and structure
>pdb|3N71|A Chain A, Crystal Structure Of Cardiac Specific Histone Methyltransferase Smyd1 Length = 490 Back     alignment and structure
>pdb|3RU0|A Chain A, Cocrystal Structure Of Human Smyd3 With Inhibitor Sinefungin Bound Length = 438 Back     alignment and structure
>pdb|3OXF|A Chain A, Human Lysine Methyltransferase Smyd3 In Complex With Adohcy (Form I) Length = 436 Back     alignment and structure
>pdb|3PDN|A Chain A, Crystal Structure Of Smyd3 In Complex With Methyltransferase Inhibitor Sinefungin Length = 428 Back     alignment and structure
>pdb|3QWP|A Chain A, Crystal Structure Of Set And Mynd Domain Containing 3; Zinc Finger Mynd Domain-Containing Protein 1 Length = 429 Back     alignment and structure
>pdb|3OXG|A Chain A, Human Lysine Methyltransferase Smyd3 In Complex With Adohcy (Form Iii) Length = 464 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query493
3qww_A 433 SET and MYND domain-containing protein 2; methyltr 1e-18
3n71_A 490 Histone lysine methyltransferase SMYD1; heart deve 4e-18
3qwp_A 429 SET and MYND domain-containing protein 3; SMYD3,SE 7e-18
2f69_A261 Histone-lysine N-methyltransferase, H3 lysine-4 sp 4e-07
1n3j_A119 A612L, histone H3 lysine methyltransferase; beta b 6e-07
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 6e-07
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 6e-06
3f9x_A166 Histone-lysine N-methyltransferase SETD8; methyltr 1e-05
3rq4_A247 Histone-lysine N-methyltransferase SUV420H2; suppr 4e-05
2w5y_A192 Histone-lysine N-methyltransferase HRX; transcript 5e-05
3ope_A222 Probable histone-lysine N-methyltransferase ASH1L; 2e-04
1ml9_A302 Histone H3 methyltransferase DIM-5; adoMet-depende 2e-04
3s8p_A273 Histone-lysine N-methyltransferase SUV420H1; SET d 3e-04
2r3a_A300 Histone-lysine N-methyltransferase SUV39H2; histon 4e-04
3ooi_A232 Histone-lysine N-methyltransferase, H3 lysine-36 l 6e-04
3h6l_A278 Histone-lysine N-methyltransferase SETD2; SET doma 7e-04
1mvh_A299 Cryptic LOCI regulator 4; lysine methyltransferase 7e-04
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A* Length = 433 Back     alignment and structure
 Score = 87.2 bits (215), Expect = 1e-18
 Identities = 31/90 (34%), Positives = 43/90 (47%), Gaps = 5/90 (5%)

Query: 405 DDYSICCQGTAFFPLQSCMNHSCCPNGKAFKREEDRDGQAVIIAQRPICKGEEVTISYID 464
           +D  +   G+A FP  + MNHSCCPN         +   A + A + I  G+EV  SYID
Sbjct: 187 EDEELSHLGSAIFPDVALMNHSCCPNVIV----TYKGTLAEVRAVQEIHPGDEVFTSYID 242

Query: 465 EDLPYGERQ-TLLADYGFRCSCPKCLEEEP 493
              P  +R   L   Y F C C +C  ++ 
Sbjct: 243 LLYPTEDRNDRLRDSYFFTCECRECTTKDK 272
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus} Length = 490 Back     alignment and structure
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A* Length = 429 Back     alignment and structure
>2f69_A Histone-lysine N-methyltransferase, H3 lysine-4 specific SET7; SET domain, protein lysine methyltransferase, enzyme- peptide-adohcy complex; HET: MLZ SAH; 1.30A {Homo sapiens} SCOP: b.76.2.1 b.85.7.1 PDB: 3m53_A* 3m55_A* 3m54_A* 3m56_A* 3m58_A* 3m57_A* 3m59_A* 3m5a_A* 1xqh_A* 4e47_A* 1n6a_A* 1o9s_A* 3cbp_A* 3cbm_A* 3cbo_A* 3os5_A* Length = 261 Back     alignment and structure
>1n3j_A A612L, histone H3 lysine methyltransferase; beta barrel, homodimer; NMR {Paramecium bursaria chlorella virus 1} SCOP: b.85.7.2 PDB: 2g46_A* 3kma_A 3kmj_A 3kmt_A* Length = 119 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>3f9x_A Histone-lysine N-methyltransferase SETD8; methyltransferase, SET, lysine, alternative splicing, cell cycle, cell division, chromatin regulator, chromosomal protein, coiled coil; HET: MLY SAH; 1.25A {Homo sapiens} PDB: 3f9w_A* 3f9y_A* 3f9z_A* 1zkk_A* 2bqz_A* Length = 166 Back     alignment and structure
>3rq4_A Histone-lysine N-methyltransferase SUV420H2; suppressor, variegation 4-20 homolog 2, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.80A {Homo sapiens} Length = 247 Back     alignment and structure
>2w5y_A Histone-lysine N-methyltransferase HRX; transcription regulation, chromosomal rearrangement, protein lysine methyltransferase, proto-oncogene; HET: SAH; 2.00A {Homo sapiens} PDB: 2w5z_A* Length = 192 Back     alignment and structure
>3ope_A Probable histone-lysine N-methyltransferase ASH1L; SET, nucleus; HET: SAM; 2.90A {Homo sapiens} Length = 222 Back     alignment and structure
>1ml9_A Histone H3 methyltransferase DIM-5; adoMet-dependent methyltransferase histone H3 lysine- 9 methylation; 1.98A {Neurospora crassa} SCOP: b.85.7.1 PDB: 1peg_A* Length = 302 Back     alignment and structure
>3s8p_A Histone-lysine N-methyltransferase SUV420H1; SET domain, histone methyltransferase, transcription regulat histone lysine, SAM, methylation, nucleus; HET: MSE SAM; 1.85A {Homo sapiens} Length = 273 Back     alignment and structure
>2r3a_A Histone-lysine N-methyltransferase SUV39H2; histone H3-K9 methyltransferase 2, H3 lysine-9 specific 2, alternative splicing, cell cycle; HET: SAM; 2.00A {Homo sapiens} Length = 300 Back     alignment and structure
>3ooi_A Histone-lysine N-methyltransferase, H3 lysine-36 lysine-20 specific; SET domain, S-adenosyl-L methionine; HET: SAM; 1.75A {Homo sapiens} Length = 232 Back     alignment and structure
>1mvh_A Cryptic LOCI regulator 4; lysine methyltransferase, CLR4, SET-domain; 2.30A {Schizosaccharomyces pombe} SCOP: b.85.7.1 PDB: 1mvx_A Length = 299 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query493
3n71_A 490 Histone lysine methyltransferase SMYD1; heart deve 100.0
3qwp_A 429 SET and MYND domain-containing protein 3; SMYD3,SE 100.0
3qww_A 433 SET and MYND domain-containing protein 2; methyltr 100.0
3rq4_A247 Histone-lysine N-methyltransferase SUV420H2; suppr 99.43
3s8p_A273 Histone-lysine N-methyltransferase SUV420H1; SET d 99.28
1n3j_A119 A612L, histone H3 lysine methyltransferase; beta b 99.23
2w5y_A192 Histone-lysine N-methyltransferase HRX; transcript 99.16
3f9x_A166 Histone-lysine N-methyltransferase SETD8; methyltr 99.1
3ope_A222 Probable histone-lysine N-methyltransferase ASH1L; 98.98
3ooi_A232 Histone-lysine N-methyltransferase, H3 lysine-36 l 98.97
3h6l_A278 Histone-lysine N-methyltransferase SETD2; SET doma 98.87
3hna_A287 Histone-lysine N-methyltransferase, H3 lysine-9 sp 98.83
1ml9_A302 Histone H3 methyltransferase DIM-5; adoMet-depende 98.75
2f69_A261 Histone-lysine N-methyltransferase, H3 lysine-4 sp 98.75
2r3a_A300 Histone-lysine N-methyltransferase SUV39H2; histon 98.68
3qxy_A 449 N-lysine methyltransferase SETD6; epigenetics, pro 98.68
3smt_A 497 Histone-lysine N-methyltransferase SETD3; histone 98.67
2odd_A64 Protein CBFA2T1; MYND zinc finger, cross-braced to 98.65
1mvh_A299 Cryptic LOCI regulator 4; lysine methyltransferase 98.62
1h3i_A293 Histone H3 lysine 4 specific methyltransferase; 2. 98.62
3bo5_A290 Histone-lysine N-methyltransferase setmar; SET dom 98.61
2qpw_A149 PR domain zinc finger protein 2; methyltransferase 98.46
2h21_A 440 Ribulose-1,5 bisphosphate carboxylase/oxygenase; S 98.37
2jw6_A52 Deformed epidermal autoregulatory factor 1 homolo; 97.38
2dj8_A60 Protein CBFA2T1; zinc finger MYND domain, protein 97.34
3db5_A151 PR domain zinc finger protein 4; methyltransferase 97.31
2d8q_A70 BLU protein, zinc finger MYND domain containing pr 97.24
2od1_A60 Protein CBFA2T1; zinc finger, cross-braced topolog 97.23
3ep0_A170 PR domain zinc finger protein 12; PR domain-contai 97.14
3dal_A196 PR domain zinc finger protein 1; methyltransferase 96.74
3ihx_A152 PR domain zinc finger protein 10; PRDM10, methyltr 96.33
1n3j_A119 A612L, histone H3 lysine methyltransferase; beta b 96.25
3f9x_A166 Histone-lysine N-methyltransferase SETD8; methyltr 96.08
3ray_A237 PR domain-containing protein 11; structural genomi 95.86
2w5y_A192 Histone-lysine N-methyltransferase HRX; transcript 95.01
3ooi_A232 Histone-lysine N-methyltransferase, H3 lysine-36 l 94.41
3ope_A222 Probable histone-lysine N-methyltransferase ASH1L; 93.7
3h6l_A278 Histone-lysine N-methyltransferase SETD2; SET doma 92.95
3hna_A287 Histone-lysine N-methyltransferase, H3 lysine-9 sp 92.56
3s8p_A273 Histone-lysine N-methyltransferase SUV420H1; SET d 92.5
3rq4_A247 Histone-lysine N-methyltransferase SUV420H2; suppr 91.89
3bo5_A290 Histone-lysine N-methyltransferase setmar; SET dom 90.88
3smt_A497 Histone-lysine N-methyltransferase SETD3; histone 90.43
1mvh_A299 Cryptic LOCI regulator 4; lysine methyltransferase 89.9
1ml9_A302 Histone H3 methyltransferase DIM-5; adoMet-depende 88.67
2f69_A261 Histone-lysine N-methyltransferase, H3 lysine-4 sp 85.02
3qxy_A449 N-lysine methyltransferase SETD6; epigenetics, pro 84.49
1h3i_A293 Histone H3 lysine 4 specific methyltransferase; 2. 84.38
2r3a_A300 Histone-lysine N-methyltransferase SUV39H2; histon 83.53
2h21_A440 Ribulose-1,5 bisphosphate carboxylase/oxygenase; S 82.31
2qpw_A149 PR domain zinc finger protein 2; methyltransferase 80.9
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus} Back     alignment and structure
Probab=100.00  E-value=1.1e-42  Score=373.20  Aligned_cols=268  Identities=24%  Similarity=0.421  Sum_probs=199.0

Q ss_pred             CCceEEeeeCCCCcEEEEcccCCCCcEEEEeccceeecccCccccccccccccccchhhhHHhhhhhhhcccCCCCCccc
Q 039721           40 CHGIKVKQISERGKGVYAGMDFQEEELVLKDQMLAGNQHSSNKMDCLVCSFCFRFIGSIELQIGRRLYLQSLGDSANDKC  119 (493)
Q Consensus        40 ~~~v~v~~~~~~Grgl~Atr~i~~Ge~I~~E~P~v~~~~~~n~~~~~~C~~C~~~l~~~~~~~~~~l~~~~~~~~~~~~~  119 (493)
                      .++|+|+.++++||||||||+|++||+|+.|.|++++....  .....|.+||++.                        
T Consensus         6 ~~~v~v~~~~~~GR~lvAtr~i~~Ge~Il~e~P~~~v~~~~--~~~~~C~~C~~~~------------------------   59 (490)
T 3n71_A            6 MENVEVFTSEGKGRGLKATKEFWAADVIFAERAYSAVVFDS--LINFVCHTCFKRQ------------------------   59 (490)
T ss_dssp             CTTEEEEECSSSCEEEEESSCBCTTCEEEEECCSEEEECGG--GTTTBCTTTCCBC------------------------
T ss_pred             CCceEEEecCCCCceEEeccCCCCCCEEEecCCceEEeccc--ccCCcCCCCCCCC------------------------
Confidence            47899999999999999999999999999999999876644  5689999999831                        


Q ss_pred             CCCCCCCCCccccCCCCCCccchhhccccCCCCCCCCCCCCCCCCCchhhHhhhccCCccCCCCCCCCCCCCcCCCCCCC
Q 039721          120 HMGSSSHTSEDCYNTDSSDMEDDSYMKNHEDYGNCAPGSSKDNISLPKGFIESLMNGELELPFSDKFPLPSTIPCPGGCG  199 (493)
Q Consensus       120 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~~~~~~~~~i~C~~~C~  199 (493)
                                                                                           ...++|+ +|+
T Consensus        60 ---------------------------------------------------------------------~~~~~C~-~C~   69 (490)
T 3n71_A           60 ---------------------------------------------------------------------EKLHRCG-QCK   69 (490)
T ss_dssp             ---------------------------------------------------------------------SCCEECT-TTS
T ss_pred             ---------------------------------------------------------------------CCCCCCC-CCC
Confidence                                                                                 0236898 999


Q ss_pred             CcccccHHHHHHhHhhhhhhcccccccchhhHHHHHHHHhccCCCchHHHHHHHHHHHHHHHHHHHHHhhHhhhcccccC
Q 039721          200 EAYYCSKSCAEADWELFHSLLCTGERSKALSRAALLKFIEHANGTNDIFLLAAKVICSIILRYRKLKAAHLEEQGKTNAN  279 (493)
Q Consensus       200 ~~~YCS~eC~~~Aw~~~H~~eC~~~~~~~~~~~~L~~f~~~~~et~~i~lLAaRila~il~~~~~l~~~~~~~~~~~~~~  279 (493)
                      .+.|||++||+.+|. +|+.+|.          .+.++.   ..+++.+++++|+|++...  .                
T Consensus        70 ~~~yCs~~Cq~~~w~-~Hk~eC~----------~~~~~~---~~p~~~~rl~lRiL~~~~~--~----------------  117 (490)
T 3n71_A           70 FAHYCDRTCQKDAWL-NHKNECA----------AIKKYG---KVPNENIRLAARIMWRVER--E----------------  117 (490)
T ss_dssp             CCEESSHHHHHHHHH-HHHHHHH----------HHHHHT---SCCCHHHHHHHHHHHHHHH--T----------------
T ss_pred             CcCcCCHHHhhhhhh-HHHHHhH----------HHHhcC---cCCCHHHHHHHHHHHHhhc--c----------------
Confidence            989999999999997 7999997          344542   2345777787887754211  0                


Q ss_pred             CCCcchHHHhhhcccccccccccccccccCCCCCCCcchHHHHHHHHHHHHHHHHHHHHhhcCCccCCCCCHHHHHHHHH
Q 039721          280 SKSSNLSLLLEAWKPISIGYKRRWWDCIALPDDVDSSDEASFRMKIRELAFTSLQLLKAAIFDSECEPLFSLEIYGHIIG  359 (493)
Q Consensus       280 ~~~~~~~~l~~~~~~f~~~~k~~Wwe~v~l~~~~~~~~~~~f~~~l~~l~~~~l~lL~~al~~~~~~~~ls~e~~~~l~g  359 (493)
                        ...+          .   ...|-.+..+++|.+.+.++.+. .++..+   ..++. .+  +.....++.+.+.+++|
T Consensus       118 --~~~~----------~---~~~~~~~~~L~sh~~~~~~~~~~-~~~~~~---~~~~~-~~--~~~~~~~~~~~l~~~~~  175 (490)
T 3n71_A          118 --GTGL----------T---EGCLVSVDDLQNHVEHFGEEEQK-ELRVDV---DTFLQ-YW--PPQSQQFSMQYISHIFG  175 (490)
T ss_dssp             --TSSB----------C---TTCSSBGGGSCCCGGGCCHHHHH-HHHHHH---HHHHH-HS--CTTSCCCCHHHHHHHHH
T ss_pred             --CccC----------c---chhhhHHHHHHhhhhhcCchHHH-HHHHHH---HHHHH-Hc--cccccCCCHHHHHHHHH
Confidence              0000          0   01122344778887766554322 122222   12222 22  22234689999999999


Q ss_pred             hhhccceeeeecCcchhhHHhhhhccchhhHHHhhhhhhhhhhcCCCcCcccceeEeccccccCCCCCCCCceEeeeeec
Q 039721          360 MFELNNLDLVVASPVEDYFLYIDDLLHGEKKEAEKITRPILDALGDDYSICCQGTAFFPLQSCMNHSCCPNGKAFKREED  439 (493)
Q Consensus       360 ~i~~N~~~i~~~sp~~~~~~~~~~l~~~~~~~~~~~~~~~~d~l~~~~~~~~~G~gLy~~~S~~NHSC~PN~~~~~~~~~  439 (493)
                      ++.+|+|+|....                                   .....|+||||.+|++||||.||+.+.|....
T Consensus       176 ~~~~N~f~i~~~~-----------------------------------g~~~~g~gl~p~~s~~NHSC~PN~~~~~~~~~  220 (490)
T 3n71_A          176 VINCNGFTLSDQR-----------------------------------GLQAVGVGIFPNLGLVNHDCWPNCTVIFNNGN  220 (490)
T ss_dssp             HHHTTEEEEECTT-----------------------------------SCSEEEEEECTTGGGCEECSSCSEEEEEECCC
T ss_pred             HHhccCcccccCC-----------------------------------CCccceEEEchhhhhcccCCCCCeeEEecCCc
Confidence            9999999984110                                   01247999999999999999999998775210


Q ss_pred             C---------CCeEEEEEcccCCCCCeEEEeccCCCCCHHHHHHHHh-ccCeeEeCcCCCCCC
Q 039721          440 R---------DGQAVIIAQRPICKGEEVTISYIDEDLPYGERQTLLA-DYGFRCSCPKCLEEE  492 (493)
Q Consensus       440 ~---------~~~~~v~AlRdI~~GEELtiSYid~~~~~~~Rq~~L~-~y~F~C~C~rC~~e~  492 (493)
                      .         ..++.|+|+|||++||||||||+|..+++.+||+.|+ .|+|.|.|+||..+.
T Consensus       221 ~~~~~~~~~~~~~~~v~A~rdI~~GEEltisY~~~~~~~~~R~~~L~~~~~F~C~C~~C~~~~  283 (490)
T 3n71_A          221 HEAVKSMFHTQMRIELRALGKISEGEELTVSYIDFLHLSEERRRQLKKQYYFDCSCEHCQKGL  283 (490)
T ss_dssp             CSSSCCCGGGSCEEEEEESSCBCTTCBCEECSSCSCSCHHHHHHHHHHHHSSCCCCHHHHHTT
T ss_pred             cccccccccccceEEEEECCCCCCCCEEEEeecCCCCCHHHHHHHHHCCCCeEeeCCCCCCCC
Confidence            0         1289999999999999999999999999999999998 699999999998664
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A* Back     alignment and structure
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A* Back     alignment and structure
>3rq4_A Histone-lysine N-methyltransferase SUV420H2; suppressor, variegation 4-20 homolog 2, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.80A {Homo sapiens} Back     alignment and structure
>3s8p_A Histone-lysine N-methyltransferase SUV420H1; SET domain, histone methyltransferase, transcription regulat histone lysine, SAM, methylation, nucleus; HET: MSE SAM; 1.85A {Homo sapiens} Back     alignment and structure
>1n3j_A A612L, histone H3 lysine methyltransferase; beta barrel, homodimer; NMR {Paramecium bursaria chlorella virus 1} SCOP: b.85.7.2 PDB: 2g46_A* 3kma_A 3kmj_A 3kmt_A* Back     alignment and structure
>2w5y_A Histone-lysine N-methyltransferase HRX; transcription regulation, chromosomal rearrangement, protein lysine methyltransferase, proto-oncogene; HET: SAH; 2.00A {Homo sapiens} PDB: 2w5z_A* Back     alignment and structure
>3f9x_A Histone-lysine N-methyltransferase SETD8; methyltransferase, SET, lysine, alternative splicing, cell cycle, cell division, chromatin regulator, chromosomal protein, coiled coil; HET: MLY SAH; 1.25A {Homo sapiens} PDB: 3f9w_A* 3f9y_A* 3f9z_A* 1zkk_A* 4ij8_A* 2bqz_A* Back     alignment and structure
>3ope_A Probable histone-lysine N-methyltransferase ASH1L; SET, nucleus; HET: SAM; 2.90A {Homo sapiens} Back     alignment and structure
>3ooi_A Histone-lysine N-methyltransferase, H3 lysine-36 lysine-20 specific; SET domain, S-adenosyl-L methionine; HET: SAM; 1.75A {Homo sapiens} Back     alignment and structure
>3hna_A Histone-lysine N-methyltransferase, H3 lysine-9 specific 5; EHMT1, structural genomics, SGC, structural genomics consortium, alternative splicing, ANK repeat; HET: MLZ SAH; 1.50A {Homo sapiens} PDB: 2rfi_A* 2igq_A* 3mo0_A* 3mo2_A* 3mo5_A* 3sw9_A* 3swc_A* 4h4h_A* 4i51_A* 3fpd_A* 3k5k_A* 3nni_A* 3rjw_A* 2o8j_A* Back     alignment and structure
>1ml9_A Histone H3 methyltransferase DIM-5; adoMet-dependent methyltransferase histone H3 lysine- 9 methylation; 1.98A {Neurospora crassa} SCOP: b.85.7.1 PDB: 1peg_A* Back     alignment and structure
>2f69_A Histone-lysine N-methyltransferase, H3 lysine-4 specific SET7; SET domain, protein lysine methyltransferase, enzyme- peptide-adohcy complex; HET: MLZ SAH; 1.30A {Homo sapiens} SCOP: b.76.2.1 b.85.7.1 PDB: 3m53_A* 3m55_A* 3m54_A* 3m56_A* 3m58_A* 3m57_A* 3m59_A* 3m5a_A* 1xqh_A* 4e47_A* 1n6a_A* 1o9s_A* 3cbp_A* 3cbm_A* 3cbo_A* 3os5_A* Back     alignment and structure
>2r3a_A Histone-lysine N-methyltransferase SUV39H2; histone H3-K9 methyltransferase 2, H3 lysine-9 specific 2, alternative splicing, cell cycle; HET: SAM; 2.00A {Homo sapiens} Back     alignment and structure
>3qxy_A N-lysine methyltransferase SETD6; epigenetics, protein lysine methyltransferase, transferase, network VIA methyllysine signaling; HET: SAM; 2.09A {Homo sapiens} PDB: 3rc0_A* Back     alignment and structure
>3smt_A Histone-lysine N-methyltransferase SETD3; histone methyltransferase, histone modification, LYSI translational modification, structural genomics; HET: SAM; 2.04A {Homo sapiens} Back     alignment and structure
>2odd_A Protein CBFA2T1; MYND zinc finger, cross-braced topology, poly-proline, proline-tryptophan interaction, metal binding protein; NMR {Homo sapiens} Back     alignment and structure
>1mvh_A Cryptic LOCI regulator 4; lysine methyltransferase, CLR4, SET-domain; 2.30A {Schizosaccharomyces pombe} SCOP: b.85.7.1 PDB: 1mvx_A Back     alignment and structure
>1h3i_A Histone H3 lysine 4 specific methyltransferase; 2.1A {Homo sapiens} SCOP: b.76.2.1 b.85.7.1 PDB: 1mt6_A* 1n6c_A* 1muf_A Back     alignment and structure
>3bo5_A Histone-lysine N-methyltransferase setmar; SET domain, chromati regulator, DNA damage, DNA repair, DNA-binding, nucleus, ST genomics; HET: SAH; 1.59A {Homo sapiens} Back     alignment and structure
>2qpw_A PR domain zinc finger protein 2; methyltransferase, activator, alternative initiation, alternative splicing, DNA-binding, metal-binding, nucleus; 1.79A {Homo sapiens} PDB: 2jv0_A* Back     alignment and structure
>2h21_A Ribulose-1,5 bisphosphate carboxylase/oxygenase; SET domain, protein lysine methyltransferase, transferase; HET: SAM; 2.45A {Pisum sativum} SCOP: a.166.1.1 b.85.7.3 PDB: 2h23_A* 2h2e_A* 2h2j_A* 1p0y_A* 1ozv_A* 1mlv_A* Back     alignment and structure
>2jw6_A Deformed epidermal autoregulatory factor 1 homolo; zinc binding domain, transcription, alternative splicing, DI mutation, DNA-binding; NMR {Homo sapiens} SCOP: g.85.1.1 Back     alignment and structure
>2dj8_A Protein CBFA2T1; zinc finger MYND domain, protein MTG8, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.85.1.1 Back     alignment and structure
>3db5_A PR domain zinc finger protein 4; methyltransferase, PRDM4, structural genomics, structural GE consortium, SGC, DNA-binding, metal-binding, nucleus; 2.15A {Homo sapiens} Back     alignment and structure
>2d8q_A BLU protein, zinc finger MYND domain containing protein 10; zmynd10, ZF-MYND, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.85.1.1 PDB: 2dan_A Back     alignment and structure
>2od1_A Protein CBFA2T1; zinc finger, cross-braced topology, metal binding protein; NMR {Homo sapiens} Back     alignment and structure
>3ep0_A PR domain zinc finger protein 12; PR domain-containing protein 12, structural genomics, structural genomics consortium, SGC, DNA-binding; 2.10A {Homo sapiens} Back     alignment and structure
>3dal_A PR domain zinc finger protein 1; methyltransferase, PRDM1, structural genomics, structural genomics consortium, SGC, DNA-binding, metal-binding; 1.65A {Homo sapiens} Back     alignment and structure
>3ihx_A PR domain zinc finger protein 10; PRDM10, methyltransferase, structural genomics, structural G consortium, SGC, DNA-binding, metal-binding, nucleus; 2.50A {Homo sapiens} Back     alignment and structure
>1n3j_A A612L, histone H3 lysine methyltransferase; beta barrel, homodimer; NMR {Paramecium bursaria chlorella virus 1} SCOP: b.85.7.2 PDB: 2g46_A* 3kma_A 3kmj_A 3kmt_A* Back     alignment and structure
>3f9x_A Histone-lysine N-methyltransferase SETD8; methyltransferase, SET, lysine, alternative splicing, cell cycle, cell division, chromatin regulator, chromosomal protein, coiled coil; HET: MLY SAH; 1.25A {Homo sapiens} PDB: 3f9w_A* 3f9y_A* 3f9z_A* 1zkk_A* 4ij8_A* 2bqz_A* Back     alignment and structure
>3ray_A PR domain-containing protein 11; structural genomics consortium, SGC, histone methylation, Zn transcriptional regulation, chromatin, transcription; 1.73A {Homo sapiens} Back     alignment and structure
>2w5y_A Histone-lysine N-methyltransferase HRX; transcription regulation, chromosomal rearrangement, protein lysine methyltransferase, proto-oncogene; HET: SAH; 2.00A {Homo sapiens} PDB: 2w5z_A* Back     alignment and structure
>3ooi_A Histone-lysine N-methyltransferase, H3 lysine-36 lysine-20 specific; SET domain, S-adenosyl-L methionine; HET: SAM; 1.75A {Homo sapiens} Back     alignment and structure
>3ope_A Probable histone-lysine N-methyltransferase ASH1L; SET, nucleus; HET: SAM; 2.90A {Homo sapiens} Back     alignment and structure
>3hna_A Histone-lysine N-methyltransferase, H3 lysine-9 specific 5; EHMT1, structural genomics, SGC, structural genomics consortium, alternative splicing, ANK repeat; HET: MLZ SAH; 1.50A {Homo sapiens} PDB: 2rfi_A* 2igq_A* 3mo0_A* 3mo2_A* 3mo5_A* 3sw9_A* 3swc_A* 4h4h_A* 4i51_A* 3fpd_A* 3k5k_A* 3nni_A* 3rjw_A* 2o8j_A* Back     alignment and structure
>3s8p_A Histone-lysine N-methyltransferase SUV420H1; SET domain, histone methyltransferase, transcription regulat histone lysine, SAM, methylation, nucleus; HET: MSE SAM; 1.85A {Homo sapiens} Back     alignment and structure
>3rq4_A Histone-lysine N-methyltransferase SUV420H2; suppressor, variegation 4-20 homolog 2, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.80A {Homo sapiens} Back     alignment and structure
>3bo5_A Histone-lysine N-methyltransferase setmar; SET domain, chromati regulator, DNA damage, DNA repair, DNA-binding, nucleus, ST genomics; HET: SAH; 1.59A {Homo sapiens} Back     alignment and structure
>3smt_A Histone-lysine N-methyltransferase SETD3; histone methyltransferase, histone modification, LYSI translational modification, structural genomics; HET: SAM; 2.04A {Homo sapiens} Back     alignment and structure
>1mvh_A Cryptic LOCI regulator 4; lysine methyltransferase, CLR4, SET-domain; 2.30A {Schizosaccharomyces pombe} SCOP: b.85.7.1 PDB: 1mvx_A Back     alignment and structure
>1ml9_A Histone H3 methyltransferase DIM-5; adoMet-dependent methyltransferase histone H3 lysine- 9 methylation; 1.98A {Neurospora crassa} SCOP: b.85.7.1 PDB: 1peg_A* Back     alignment and structure
>2f69_A Histone-lysine N-methyltransferase, H3 lysine-4 specific SET7; SET domain, protein lysine methyltransferase, enzyme- peptide-adohcy complex; HET: MLZ SAH; 1.30A {Homo sapiens} SCOP: b.76.2.1 b.85.7.1 PDB: 3m53_A* 3m55_A* 3m54_A* 3m56_A* 3m58_A* 3m57_A* 3m59_A* 3m5a_A* 1xqh_A* 4e47_A* 1n6a_A* 1o9s_A* 3cbp_A* 3cbm_A* 3cbo_A* 3os5_A* Back     alignment and structure
>3qxy_A N-lysine methyltransferase SETD6; epigenetics, protein lysine methyltransferase, transferase, network VIA methyllysine signaling; HET: SAM; 2.09A {Homo sapiens} PDB: 3rc0_A* Back     alignment and structure
>1h3i_A Histone H3 lysine 4 specific methyltransferase; 2.1A {Homo sapiens} SCOP: b.76.2.1 b.85.7.1 PDB: 1mt6_A* 1n6c_A* 1muf_A Back     alignment and structure
>2r3a_A Histone-lysine N-methyltransferase SUV39H2; histone H3-K9 methyltransferase 2, H3 lysine-9 specific 2, alternative splicing, cell cycle; HET: SAM; 2.00A {Homo sapiens} Back     alignment and structure
>2h21_A Ribulose-1,5 bisphosphate carboxylase/oxygenase; SET domain, protein lysine methyltransferase, transferase; HET: SAM; 2.45A {Pisum sativum} SCOP: a.166.1.1 b.85.7.3 PDB: 2h23_A* 2h2e_A* 2h2j_A* 1p0y_A* 1ozv_A* 1mlv_A* Back     alignment and structure
>2qpw_A PR domain zinc finger protein 2; methyltransferase, activator, alternative initiation, alternative splicing, DNA-binding, metal-binding, nucleus; 1.79A {Homo sapiens} PDB: 2jv0_A* Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 493
d2f69a2171 b.85.7.1 (A:194-364) Histone H3 K4-specific methyl 5e-09
d2g46a1119 b.85.7.2 (A:1-119) Viral histone H3 Lysine 27 Meth 4e-07
d2h2ja2261 b.85.7.3 (A:50-310) RuBisCo LSMT catalytic domain 1e-06
d1mvha_269 b.85.7.1 (A:) SET domain of Clr4 {Fission yeast (S 2e-04
d1ml9a_284 b.85.7.1 (A:) Dim-5 {Fungus (Neurospora crassa) [T 6e-04
>d2f69a2 b.85.7.1 (A:194-364) Histone H3 K4-specific methyltransferase SET7/9 catalytic domain {Human (Homo sapiens) [TaxId: 9606]} Length = 171 Back     information, alignment and structure

class: All beta proteins
fold: beta-clip
superfamily: SET domain
family: Histone lysine methyltransferases
domain: Histone H3 K4-specific methyltransferase SET7/9 catalytic domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 53.6 bits (128), Expect = 5e-09
 Identities = 20/111 (18%), Positives = 32/111 (28%), Gaps = 8/111 (7%)

Query: 386 HGEKKEAEKITRPILDALGDDY------SICCQGTAFFPLQSCMNHSCCPNGKAFKREED 439
           H E    +        +L ++                  L    NHS  PN         
Sbjct: 59  HQEVDSRDWALNGNTLSLDEETVIDVPEPYNHVSKYCASLGHKANHSFTPNCIYDMFVHP 118

Query: 440 RDGQAVII-AQRPICKGEEVTISYIDEDLPYGERQTLLAD-YGFRCSCPKC 488
           R G    I   R +   EE+T++Y  +  P G+      + Y       + 
Sbjct: 119 RFGPIKCIRTLRAVEADEELTVAYGYDHSPPGKSGPEAPEWYQVELKAFQA 169
>d2g46a1 b.85.7.2 (A:1-119) Viral histone H3 Lysine 27 Methyltransferase {Paramecium bursaria chlorella virus 1, PBCV-1 [TaxId: 10506]} Length = 119 Back     information, alignment and structure
>d2h2ja2 b.85.7.3 (A:50-310) RuBisCo LSMT catalytic domain {Garden pea (Pisum sativum) [TaxId: 3888]} Length = 261 Back     information, alignment and structure
>d1mvha_ b.85.7.1 (A:) SET domain of Clr4 {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Length = 269 Back     information, alignment and structure
>d1ml9a_ b.85.7.1 (A:) Dim-5 {Fungus (Neurospora crassa) [TaxId: 5141]} Length = 284 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query493
d2h2ja2261 RuBisCo LSMT catalytic domain {Garden pea (Pisum s 99.73
d2g46a1119 Viral histone H3 Lysine 27 Methyltransferase {Para 98.97
d1ml9a_284 Dim-5 {Fungus (Neurospora crassa) [TaxId: 5141]} 98.84
d2f69a2171 Histone H3 K4-specific methyltransferase SET7/9 ca 98.63
d1mvha_269 SET domain of Clr4 {Fission yeast (Schizosaccharom 98.51
d2jw6a138 Zinc finger MYND domain-containing protein 2, MTG8 97.98
d2dj8a147 Zinc finger MYND domain-containing protein 2, MTG8 97.83
d2dana147 Zinc finger MYND domain-containing protein 10, ZMY 97.83
d2g46a1119 Viral histone H3 Lysine 27 Methyltransferase {Para 96.08
d1ml9a_284 Dim-5 {Fungus (Neurospora crassa) [TaxId: 5141]} 93.2
d1mvha_269 SET domain of Clr4 {Fission yeast (Schizosaccharom 92.03
d2f69a2171 Histone H3 K4-specific methyltransferase SET7/9 ca 90.69
>d2h2ja2 b.85.7.3 (A:50-310) RuBisCo LSMT catalytic domain {Garden pea (Pisum sativum) [TaxId: 3888]} Back     information, alignment and structure
class: All beta proteins
fold: beta-clip
superfamily: SET domain
family: RuBisCo LSMT catalytic domain
domain: RuBisCo LSMT catalytic domain
species: Garden pea (Pisum sativum) [TaxId: 3888]

Probab=99.73  E-value=3.8e-18  Score=164.26  Aligned_cols=95  Identities=19%  Similarity=0.221  Sum_probs=70.9

Q ss_pred             cCCCCCHHHHHHHHHhhhccceeeeecCcchhhHHhhhhccchhhHHHhhhhhhhhhhcCCCcCcccceeEeccccccCC
Q 039721          345 CEPLFSLEIYGHIIGMFELNNLDLVVASPVEDYFLYIDDLLHGEKKEAEKITRPILDALGDDYSICCQGTAFFPLQSCMN  424 (493)
Q Consensus       345 ~~~~ls~e~~~~l~g~i~~N~~~i~~~sp~~~~~~~~~~l~~~~~~~~~~~~~~~~d~l~~~~~~~~~G~gLy~~~S~~N  424 (493)
                      ....++.+.|...+.++..+++.+.                                        ...|.+|||.++++|
T Consensus       154 ~~~~~~~~~~~~a~~~v~sr~~~~~----------------------------------------~~~~~~l~P~~d~~N  193 (261)
T d2h2ja2         154 FPDPVTLDDFFWAFGILRSRAFSRL----------------------------------------RNENLVVVPMADLIN  193 (261)
T ss_dssp             CCSCCCHHHHHHHHHHHHHHSBCCC-------------------------------------------CCBCCTTGGGCE
T ss_pred             ccCccCHHHHHHHHHHhhccccccc----------------------------------------ccccccchhhhHHhh
Confidence            3455788889888888888877652                                        125779999999999


Q ss_pred             CCCCCCceEeeeee-------cCCCeEEEEEcccCCCCCeEEEeccCCCCCHHHHHHHHhccCeeE
Q 039721          425 HSCCPNGKAFKREE-------DRDGQAVIIAQRPICKGEEVTISYIDEDLPYGERQTLLADYGFRC  483 (493)
Q Consensus       425 HSC~PN~~~~~~~~-------~~~~~~~v~AlRdI~~GEELtiSYid~~~~~~~Rq~~L~~y~F~C  483 (493)
                      |||.||+...+...       ..++.++|+|+|+|++||||||||.... +.   .+.|..|||.+
T Consensus       194 Hsc~pn~~~~~~~~~~~~~~~~~~~~~~l~A~r~I~~GEEI~isYG~~~-~n---~~ll~~yGFv~  255 (261)
T d2h2ja2         194 HSAGVTTEDHAYEVKGAAGLFSWDYLFSLKSPLSVKAGEQVYIQYDLNK-SN---AELALDYGFIE  255 (261)
T ss_dssp             ECSSCCSCCCCCC-----------CEEEEECSSCCCTTSBCEECSCSSC-CH---HHHHHHSSCCC
T ss_pred             cCCCCCcccccccccCcccccCCCcEEEEEECCCCCCCCEEEEecCCCC-CH---HHHHHhCCCCC
Confidence            99999998765321       1245799999999999999999997532 32   34666899976
>d2g46a1 b.85.7.2 (A:1-119) Viral histone H3 Lysine 27 Methyltransferase {Paramecium bursaria chlorella virus 1, PBCV-1 [TaxId: 10506]} Back     information, alignment and structure
>d1ml9a_ b.85.7.1 (A:) Dim-5 {Fungus (Neurospora crassa) [TaxId: 5141]} Back     information, alignment and structure
>d2f69a2 b.85.7.1 (A:194-364) Histone H3 K4-specific methyltransferase SET7/9 catalytic domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1mvha_ b.85.7.1 (A:) SET domain of Clr4 {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Back     information, alignment and structure
>d2jw6a1 g.85.1.1 (A:503-540) Zinc finger MYND domain-containing protein 2, MTG8 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2dj8a1 g.85.1.1 (A:8-54) Zinc finger MYND domain-containing protein 2, MTG8 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2dana1 g.85.1.1 (A:8-54) Zinc finger MYND domain-containing protein 10, ZMYND10 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2g46a1 b.85.7.2 (A:1-119) Viral histone H3 Lysine 27 Methyltransferase {Paramecium bursaria chlorella virus 1, PBCV-1 [TaxId: 10506]} Back     information, alignment and structure
>d1ml9a_ b.85.7.1 (A:) Dim-5 {Fungus (Neurospora crassa) [TaxId: 5141]} Back     information, alignment and structure
>d1mvha_ b.85.7.1 (A:) SET domain of Clr4 {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Back     information, alignment and structure
>d2f69a2 b.85.7.1 (A:194-364) Histone H3 K4-specific methyltransferase SET7/9 catalytic domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure