Citrus Sinensis ID: 039731

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-----
Protein Sequence
MASSSFGLTSQSKYDVFLSFRGEDTRDNFTSHLHAALCRKKIKTFIDEELNRGDEISPAILKAIEGSKITVIIFSKNYASSKWCLDELVKILECHKMNSQMVVPVFYRIDPSDVRKQSGRFKDAFVKHEEQFKDMPEKIQIWRAFSVQYRCFEKGPKVHSCGVCPVYAHPNGTKPNTFTVNVLPPNEEECTQIRKLHYDFHDNVGTSGNSESIDRSGELEVESICREQINAPQQQRSSLFSHIIAKGGGLYAFLAPSDHASIQIQRRHIRLKVSLLASKVDSASSPELSTSDKIEPKHNVDNGHVTSSSTNNESH
Secondary Structure (PSIPRED)
cccccccccccccccEEEcccccccccccHHHHHHHHHHccccEEEcccccccccccHHHHHHHHHccEEEEEEcccccccHHHHHHHHHHHHcccccccEEEEEEccccccccccccccHHHHHHHHHHHccccHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccEEEEccccccccHHHHHHHHHHHHHcccccEEEEccccHHHHHHHHHHHHHHHcccccEEcccccHHHHHHHHHHcccEEEEEEccccccccccccccccccccccccccEEEEcccccccc
Secondary Structure Prediction (SSPRO)
ccccccccccccEEEEEEccccHcHHHHHHHHHHHHHHHccccEEEcccccccccccHHHHHHHHHccEEEEEEEccccccHHHHHHHHHHHHHHHHcccEEEEEEEEccHHHHHHccccHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHHHccccccccHccEHEEEEccHHHHcccHHcHHHHHHHHHccHHHHHHHHHcccHHHHHHHHHHHHHccccEHEEEccccccHHHHHHHHHEEEEEHHHcccccccccccccccccccccccccccEEccccccccc
Coil and Loop (DISEMBL)
masssfgltsqskYDVFLsfrgedtrdnFTSHLHAALCRKKIKTFIDeelnrgdeisPAILKAIEGSKITVIIFSKNYASSKWCLDELVKILEChkmnsqmvvpvfyridpsdvrkqsgrfkDAFVKHEEQFKDMPEKIQIWRAFSVQYrcfekgpkvhscgvcpvyahpngtkpntftvnvlppneeecTQIRKLHYDfhdnvgtsgnsesidrsgelEVESICREqinapqqqRSSLFSHIIAKggglyaflapsdhasiQIQRRHIRLKVSLLAskvdsasspelstsdkiepkhnvdnghvtssstnnesh
Flexible Loop (DISEMBL)
masssfgltsqskYDVFLSFRGEDTRDNFTSHLHAALCRKKIKTFIDEelnrgdeispAILKAIEGSKITVIIFSKNYASSKWCLDELVKILECHKMNSQMVVPVFYRIDPSDVRKQSGRFKDAFVKheeqfkdmpeKIQIWRAFSVQYRCFEKGPKVHSCGVCPVYAHPNGTKPNTFTVNVLPPNEEECTQIRKLHYDFHDNvgtsgnsesidrSGELEVESICREQINAPQQQRSSLFSHIIAKGGGLYAFLAPSDHASIQIQRRHIRLKVSLLaskvdsasspelstsdkiepkhnvdnghvtssstnnesh
Low Complexity Region (SEG)
MASSSFGLTSQSKYDVFLSFRGEDTRDNFTSHLHAALCRKKIKTFIDEELNRGDEISPAILKAIEGSKITVIIFSKNYASSKWCLDELVKILECHKMNSQMVVPVFYRIDPSDVRKQSGRFKDAFVKHEEQFKDMPEKIQIWRAFSVQYRCFEKGPKVHSCGVCPVYAHPNGTKPNTFTVNVLPPNEEECTQIRKLHYDFHDNVGTSGNSESIDRSGELEVESICREQINAPQQQRSSLFSHIIAKGGGLYAFLAPSDHASIQIQRRHIRLKVSLLASKVDSASSPELSTSDKIEPKHNVDNGHVTSSSTNNESH
Disordered region (IsUnstruct)
*************YDVFLSFRGEDTRDNFTSHLHAALCRKKIKTFIDEELNRGDEISPAILKAIEGSKITVIIFSKNYASSKWCLDELVKILECHKMNSQMVVPVFYRIDPSDV*****RFKDAFVKHEEQFKDMPEKIQIWRAFSVQYRCFEKGPKVHSCGVCPVYAHPNGTKPNTFTVNVLPPNEEECTQIRKLHYDFHDN***********************************LFSHIIAKGGGLYAFLAPSDHASIQIQRRHIRLKVSLL***************************************
Disordered Region (DISOPRED)
************KYDVFLSFRGEDTRDNFTSHLHAALCRKKIKTFIDEELNRGDEISPAILKAIEGSKITVIIFSKNYASSKWCLDELVKILECHKMNSQMVVPVFYRIDPSDVRKQSGRFKDAFVKHEEQ*****EKIQIWRAFSVQYRCFEKGPKVHSCGVCPVYAHPNGTKPNTFTV***********QIRKLHYDFHDNVGTSGNSESIDRSGELEVESICREQINAPQQQRSSLFSHIIAKGGGLYAFLAPSDHASIQIQRRHIRLKVSLLASKVDSASSPELSTSDKIEPKHNVDNGHVT*********
Disordered Region (DISEMBL)
**********QSKYDVFLSFRGEDTRDNFTSHLHAALCRKKIKTFIDEELNRGDEISPAILKAIEGSKITVIIFSKNYASSKWCLDELVKILECHKMNSQMVVPVFYRIDPSDVRKQSGRFKDAFVKHEEQFKDMPEKIQIWRAFSVQYRCFEKGPKVHSCGVCPVYAHPNGTKPNTFTVNVLPPNEEECTQIRKLHYDFHDNVGTS*************VESICREQINAPQQQRSSLFSHIIAKGGGLYAFLAPSDHASIQIQRRHIRLKVSLLAS*************DKIEPKHNVDNG************
Disordered Region (DISPRO)
*********SQSKYDVFLSFRGEDTRDNFTSHLHAALCRKKIKTFIDEELNRGDEISPAILKAIEGSKITVIIFSKNYASSKWCLDELVKILECHKMNSQMVVPVFYRIDPSDVRKQSGRFKDAFVKHEEQFKDMPEKIQIWRAFSVQYRCFEKGPKVHSCGVCPVYAHPNGTKPNTFTVNVLPPNEEECTQIRKLHYDFHDNVGTSGNSESIDRSGELEVESICREQINAPQQQRSSLFSHIIAKGGGLYAFLAPSDHASIQIQRRHIRLKVSLLASK************************************
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MASSSFGLTSQSKYDVFLSFRGEDTRDNFTSHLHAALCRKKIKTFIDEELNRGDEISPAILKAIEGSKITVIIFSKNYASSKWCLDELVKILECHKMNSQMVVPVFYRIDPSDVRKQSGRFKDAFVKHEEQFKDMPEKIQIWRAFSVQYRCFEKGPKVHSCGVCPVYAHPNGTKPNTFTVNVLPPNEEECTQIRKLHYDFHDNVGTSGNSESIDRSGELEVESICREQINAPQQQRSSLFSHIIAKGGGLYAFLAPSDHASIQIQRRHIRLKVSLLASKVDSASSPELSTSDKIEPKHNVDNGHVTSSSTNNESH
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	315	2.2.26 [Sep-21-2011]
Q40392	1144	TMV resistance protein N	N/A	no	0.412	0.113	0.549	1e-34
O23530	1301	Protein SUPPRESSOR OF npr	no	no	0.380	0.092	0.528	2e-30
O82500	1095	Putative disease resistan	no	no	0.393	0.113	0.503	7e-30
Q9FHE9	354	Protein PHLOEM PROTEIN 2-	no	no	0.450	0.401	0.377	8e-23
Q9C5Q9	411	Protein PHLOEM PROTEIN 2-	no	no	0.4	0.306	0.409	1e-22
Q9SYC9	571	Vesicle-associated protei	no	no	0.412	0.227	0.389	1e-21
Q9FHE8	392	Protein PHLOEM PROTEIN 2-	no	no	0.447	0.359	0.366	7e-17
Q9SZ67	1895	Probable WRKY transcripti	no	no	0.339	0.056	0.276	3e-07
Q9FL92	1372	Probable WRKY transcripti	no	no	0.266	0.061	0.380	4e-07

>sp|Q40392|TMVRN_NICGU TMV resistance protein N OS=Nicotiana glutinosa GN=N PE=1 SV=1

 Score =  147 bits (371), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 72/131 (54%), Positives = 91/131 (69%), Gaps = 1/131 (0%)

Query: 14  YDVFLSFRGEDTRDNFTSHLHAALCRKKIKTFIDEE-LNRGDEISPAILKAIEGSKITVI 72
           YDVFLSFRGEDTR  FTSHL+  L  K IKTF D++ L  G  I   + KAIE S+  ++
Sbjct: 12  YDVFLSFRGEDTRKTFTSHLYEVLNDKGIKTFQDDKRLEYGATIPGELCKAIEESQFAIV 71

Query: 73  IFSKNYASSKWCLDELVKILECHKMNSQMVVPVFYRIDPSDVRKQSGRFKDAFVKHEEQF 132
           +FS+NYA+S+WCL+ELVKI+EC     Q V+P+FY +DPS VR Q   F  AF +HE ++
Sbjct: 72  VFSENYATSRWCLNELVKIMECKTRFKQTVIPIFYDVDPSHVRNQKESFAKAFEEHETKY 131

Query: 133 KDMPEKIQIWR 143
           KD  E IQ WR
Sbjct: 132 KDDVEGIQRWR 142

Disease resistance protein. Resistance proteins guard the plant against pathogens that contain an appropriate avirulence protein via a direct or indirect interaction with this avirulence protein. That triggers a defense system including the hypersensitive response, which restricts the pathogen growth.
Nicotiana glutinosa (taxid: 35889)

>sp|O23530|SNC1_ARATH Protein SUPPRESSOR OF npr1-1, CONSTITUTIVE 1 OS=Arabidopsis thaliana GN=SNC1 PE=1 SV=3

 Score =  132 bits (333), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 66/125 (52%), Positives = 88/125 (70%), Gaps = 5/125 (4%)

Query: 1   MASSSFGLTSQSKYDVFLSFRGEDTRDNFTSHLHAALCRKKIKTFIDEELNRGDEISPAI 60
           +ASSS       +YDVF SFRGED RD+F SHL   L R K  TFID+E+ R   I P +
Sbjct: 3   IASSS----GSRRYDVFPSFRGEDVRDSFLSHLLKEL-RGKAITFIDDEIERSRSIGPEL 57

Query: 61  LKAIEGSKITVIIFSKNYASSKWCLDELVKILECHKMNSQMVVPVFYRIDPSDVRKQSGR 120
           L AI+ S+I ++IFSKNYASS WCL+ELV+I +C+   +QMV+P+F+ +D S+V+KQ+G 
Sbjct: 58  LSAIKESRIAIVIFSKNYASSTWCLNELVEIHKCYTNLNQMVIPIFFHVDASEVKKQTGE 117

Query: 121 FKDAF 125
           F   F
Sbjct: 118 FGKVF 122

Disease resistance protein of the TIR-NB-LRR-type. Part of the RPP5 locus that contains a cluster of several paralogous disease resistance (R) genes. Resistance proteins guard the plant against pathogens that contain an appropriate avirulence protein via an indirect interaction with this avirulence protein. That triggers a defense system including the hypersensitive response, which restricts the pathogen growth. Regulated by RNA silencing. Expression regulated by MOS1 at chromatin level. Negatively regulated at the transcript level by BON1.

Arabidopsis thaliana (taxid: 3702)

>sp|O82500|Y4117_ARATH Putative disease resistance protein At4g11170 OS=Arabidopsis thaliana GN=At4g11170 PE=2 SV=1

 Score =  131 bits (329), Expect = 7e-30,   Method: Compositional matrix adjust.
 Identities = 64/127 (50%), Positives = 89/127 (70%), Gaps = 3/127 (2%)

Query: 1   MASSSFGLTSQSKYDVFLSFRGEDTRDNFTSHLHAALCRKKIKTFIDEELNRGDEISPAI 60
           MASSS   ++  +YDVF SFRGED R+NF SHL      K I TF D+ + R   I   +
Sbjct: 1   MASSS---SNSWRYDVFPSFRGEDVRNNFLSHLLKEFESKGIVTFRDDHIKRSHTIGHEL 57

Query: 61  LKAIEGSKITVIIFSKNYASSKWCLDELVKILECHKMNSQMVVPVFYRIDPSDVRKQSGR 120
             AI  SKI+V++FS+NYASS WCLDEL++I++C +     V+PVFY++DPSD+RKQ+G+
Sbjct: 58  RAAIRESKISVVLFSENYASSSWCLDELIEIMKCKEEQGLKVMPVFYKVDPSDIRKQTGK 117

Query: 121 FKDAFVK 127
           F  +F++
Sbjct: 118 FGMSFLE 124

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FHE9|P2A08_ARATH Protein PHLOEM PROTEIN 2-LIKE A8 OS=Arabidopsis thaliana GN=PP2A8 PE=2 SV=1

 Score =  107 bits (268), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 54/143 (37%), Positives = 87/143 (60%), Gaps = 1/143 (0%)

Query: 1   MASSSFGLTSQSKYDVFLSFRGEDTRDNFTSHLHAALCRKKIKTFIDEELNRGDEISPAI 60
           MA+SS    + +   VF++FRG+D R+ F S L  A+    I  FID++   G ++    
Sbjct: 1   MAASSSVRPTPTGPQVFINFRGKDLRNGFLSFLEPAMREANINVFIDKDEVVGTDLVNLF 60

Query: 61  LKAIEGSKITVIIFSKNYASSKWCLDELVKILECHKMNSQMVVPVFYRIDPSDVRKQSGR 120
           ++ I+ S++ V+IFSK+Y SS+WCLDEL +I +C        +P+FY++ PS V +  G 
Sbjct: 61  VR-IQESRVAVVIFSKDYTSSEWCLDELAEIKDCINQGGLNAIPIFYKLAPSSVLELKGG 119

Query: 121 FKDAFVKHEEQFKDMPEKIQIWR 143
           F D F   +E++K+ PE+ Q W+
Sbjct: 120 FGDTFRVLKEKYKNDPERTQKWQ 142

Arabidopsis thaliana (taxid: 3702)

>sp|Q9C5Q9|P2A05_ARATH Protein PHLOEM PROTEIN 2-LIKE A5 OS=Arabidopsis thaliana GN=PP2A5 PE=2 SV=1

 Score =  107 bits (267), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 52/127 (40%), Positives = 79/127 (62%), Gaps = 1/127 (0%)

Query: 16  VFLSFRGEDTRDNFTSHLHAALCRKKIKTFIDEELNRGDEISPAILKAIEGSKITVIIFS 75
           VF++FRG+D R  F S L  AL ++KI  FIDE+  RG  +  ++   I  SKI ++IFS
Sbjct: 24  VFINFRGKDLRKGFMSFLKPALKKEKINVFIDEQEERGKYLI-SLFDTIGESKIALVIFS 82

Query: 76  KNYASSKWCLDELVKILECHKMNSQMVVPVFYRIDPSDVRKQSGRFKDAFVKHEEQFKDM 135
           + Y  S WC+DELVKI E    N  +++P+FYR+D   V+  +G+F D F    ++++  
Sbjct: 83  EGYCESHWCMDELVKIKEYMDQNRLIIIPIFYRLDLDVVKDLTGKFGDNFWDLVDKYQPE 142

Query: 136 PEKIQIW 142
           P+K+  W
Sbjct: 143 PKKLHKW 149

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SYC9|VAP14_ARATH Vesicle-associated protein 1-4 OS=Arabidopsis thaliana GN=PVA14 PE=2 SV=1

 Score =  104 bits (259), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 51/131 (38%), Positives = 80/131 (61%), Gaps = 1/131 (0%)

Query: 13  KYDVFLSFRGEDTRDNFTSHLHAALCRKKIKTFIDEELNRGDEISPAILKAIEGSKITVI 72
           +Y VF++FRG++ R++F   L  A+  +KI  F DE   RG  ++  + + IE S++ V 
Sbjct: 357 QYQVFINFRGDELRNSFVGFLVKAMRLEKINVFTDEVELRGTNLN-YLFRRIEESRVAVA 415

Query: 73  IFSKNYASSKWCLDELVKILECHKMNSQMVVPVFYRIDPSDVRKQSGRFKDAFVKHEEQF 132
           IFS+ Y  S WCLDELVK+ E  +    +VVPVFYR++ +  ++  G F D     E ++
Sbjct: 416 IFSERYTESCWCLDELVKMKEQMEQGKLVVVPVFYRLNATACKRFMGAFGDNLRNLEWEY 475

Query: 133 KDMPEKIQIWR 143
           +  PE+IQ W+
Sbjct: 476 RSEPERIQKWK 486

May play a role in vesicle trafficking.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FHE8|P2A06_ARATH Protein PHLOEM PROTEIN 2-LIKE A6 OS=Arabidopsis thaliana GN=PP2A6 PE=2 SV=1

 Score = 88.2 bits (217), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 52/142 (36%), Positives = 76/142 (53%), Gaps = 1/142 (0%)

Query: 2   ASSSFGLTSQSKYDVFLSFRGEDTRDNFTSHLHAALCRKKIKTFIDEELNRGDEISPAIL 61
           +SSS    + +   VF+ FRG D R +F S L  AL    I  FIDE    G E++  +L
Sbjct: 3   SSSSVVKPTPTGPQVFICFRGADVRKHFISFLVPALREANINVFIDENEFLGSEMA-NLL 61

Query: 62  KAIEGSKITVIIFSKNYASSKWCLDELVKILECHKMNSQMVVPVFYRIDPSDVRKQSGRF 121
             IE S++ ++IFS ++  S  CL+EL KI E       +V+P+FY++ PS V+   G+F
Sbjct: 62  TRIEESELALVIFSVDFTRSHRCLNELAKIKERKDQGRLIVIPIFYKVKPSAVKFLEGKF 121

Query: 122 KDAFVKHEEQFKDMPEKIQIWR 143
            D F   E   + M    Q W+
Sbjct: 122 GDNFRALERNNRHMLPITQKWK 143

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SZ67|WRK19_ARATH Probable WRKY transcription factor 19 OS=Arabidopsis thaliana GN=WRKY19 PE=2 SV=1

 Score = 56.2 bits (134), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 34/123 (27%), Positives = 61/123 (49%), Gaps = 16/123 (13%)

Query: 8   LTSQSKYDVFLSF-RGEDTRDNFTSHLHAALCRKKIKTFIDEELNRGDEISPAILKAIEG 66
            +S   YDV + + R + + ++F SHL A+LCR+ I  +  E+ N  D        A+  
Sbjct: 662 FSSSKDYDVVIRYGRADISNEDFISHLRASLCRRGISVY--EKFNEVD--------ALPK 711

Query: 67  SKITVIIFSKNYASSKWCLDELVKILECHKMNSQMVVPVFYRIDPSDVRKQSGRFKDAFV 126
            ++ +I+ +  Y  S      L+ ILE      ++V P+FYR+ P D    S  ++  ++
Sbjct: 712 CRVLIIVLTSTYVPSN-----LLNILEHQHTEDRVVYPIFYRLSPYDFVCNSKNYERFYL 766

Query: 127 KHE 129
           + E
Sbjct: 767 QDE 769

Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element. May act also as a disease resistance protein with a serine/threonine-protein kinase activity.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FL92|WRK16_ARATH Probable WRKY transcription factor 16 OS=Arabidopsis thaliana GN=WRKY16 PE=2 SV=1

 Score = 55.8 bits (133), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 35/92 (38%), Positives = 52/92 (56%), Gaps = 8/92 (8%)

Query: 23  EDTRDNFTSHLHAALCRKKIK-TFIDEELNRGDEISPAILKAIEGSKITVIIFSKNYASS 81
           E+ R +F SHL  AL RK +   FID +    D +S      +E ++++V+I   N   S
Sbjct: 14  EEVRYSFVSHLSKALQRKGVNDVFIDSD----DSLSNESQSMVERARVSVMILPGNRTVS 69

Query: 82  KWCLDELVKILECHKMNSQMVVPVFYRIDPSD 113
              LD+LVK+L+C K   Q+VVPV Y +  S+
Sbjct: 70  ---LDKLVKVLDCQKNKDQVVVPVLYGVRSSE 98

Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element. May also act as a disease resistance protein.

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	315
255561496	876	TMV resistance protein N, putative [Rici	0.431	0.155	0.683	4e-49
255555357	1094	leucine-rich repeat-containing protein,	0.425	0.122	0.694	5e-48
224127754	1125	tir-nbs-lrr resistance protein [Populus	0.425	0.119	0.671	9e-48
357486483	242	TMV resistance protein N [Medicago trunc	0.453	0.590	0.622	4e-47
224145016	1254	tir-nbs-lrr resistance protein [Populus	0.453	0.114	0.652	7e-47
224145030	1435	tir-nbs-lrr resistance protein [Populus	0.453	0.099	0.638	2e-46
255555349	1109	leucine-rich repeat containing protein,	0.431	0.122	0.639	1e-45
224127917	1470	tir-nbs-lrr resistance protein [Populus	0.453	0.097	0.625	2e-45
317106744	947	JHS03A10.2 [Jatropha curcas]	0.425	0.141	0.656	4e-45
357486467	200	TMV resistance protein N [Medicago trunc	0.447	0.705	0.617	6e-45

>gi|255561496|ref|XP_002521758.1| TMV resistance protein N, putative [Ricinus communis] gi|223538971|gb|EEF40568.1| TMV resistance protein N, putative [Ricinus communis]

 Score =  201 bits (510), Expect = 4e-49,   Method: Compositional matrix adjust.
 Identities = 93/136 (68%), Positives = 113/136 (83%)

Query: 9   TSQSKYDVFLSFRGEDTRDNFTSHLHAALCRKKIKTFIDEELNRGDEISPAILKAIEGSK 68
           TS+ KYDVFLSFRGEDTRDNFTSHL++AL +KKI TF+D+E+ RG+EISP+I KAI+GSK
Sbjct: 6   TSEKKYDVFLSFRGEDTRDNFTSHLYSALNKKKIFTFMDKEIKRGEEISPSIAKAIKGSK 65

Query: 69  ITVIIFSKNYASSKWCLDELVKILECHKMNSQMVVPVFYRIDPSDVRKQSGRFKDAFVKH 128
           ++VIIFS+ YA SKWCLDEL KILEC KMN Q+V+PVFYR+DP  VR Q G F  AF KH
Sbjct: 66  LSVIIFSEKYAFSKWCLDELTKILECKKMNGQIVIPVFYRVDPVHVRNQRGSFACAFAKH 125

Query: 129 EEQFKDMPEKIQIWRA 144
           EE  K+  EK++ WR+
Sbjct: 126 EETLKERMEKVESWRS 141

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255555357|ref|XP_002518715.1| leucine-rich repeat-containing protein, putative [Ricinus communis] gi|223542096|gb|EEF43640.1| leucine-rich repeat-containing protein, putative [Ricinus communis]

 Score =  197 bits (501), Expect = 5e-48,   Method: Compositional matrix adjust.
 Identities = 93/134 (69%), Positives = 109/134 (81%)

Query: 11  QSKYDVFLSFRGEDTRDNFTSHLHAALCRKKIKTFIDEELNRGDEISPAILKAIEGSKIT 70
           Q KYDVFLSFRGEDTR NFTSHLHAAL  KKI TFID++L RG+EISP++LKAIE SKI+
Sbjct: 20  QEKYDVFLSFRGEDTRYNFTSHLHAALNGKKIPTFIDDDLERGNEISPSLLKAIEESKIS 79

Query: 71  VIIFSKNYASSKWCLDELVKILECHKMNSQMVVPVFYRIDPSDVRKQSGRFKDAFVKHEE 130
           V+I S++Y SSKWCL+ELVKILEC K   QMV+PVFYR+DPS VR Q+G F+D F +HEE
Sbjct: 80  VVIISQDYPSSKWCLEELVKILECMKNRGQMVIPVFYRVDPSHVRNQTGSFEDVFARHEE 139

Query: 131 QFKDMPEKIQIWRA 144
                 EK+Q WRA
Sbjct: 140 SLSVSKEKVQSWRA 153

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224127754|ref|XP_002329169.1| tir-nbs-lrr resistance protein [Populus trichocarpa] gi|222870950|gb|EEF08081.1| tir-nbs-lrr resistance protein [Populus trichocarpa]

 Score =  196 bits (499), Expect = 9e-48,   Method: Compositional matrix adjust.
 Identities = 90/134 (67%), Positives = 110/134 (82%)

Query: 11  QSKYDVFLSFRGEDTRDNFTSHLHAALCRKKIKTFIDEELNRGDEISPAILKAIEGSKIT 70
           Q KYDVFLSFRGEDTR  F SHL+AAL RK+I TFID +LNRG+EISP++LKAIE SK++
Sbjct: 12  QEKYDVFLSFRGEDTRVCFVSHLYAALKRKQISTFIDYKLNRGEEISPSLLKAIEDSKLS 71

Query: 71  VIIFSKNYASSKWCLDELVKILECHKMNSQMVVPVFYRIDPSDVRKQSGRFKDAFVKHEE 130
           V++FS NYASSKWCL+EL KILEC K+  QMV+PVFYR+DPS VR Q+G F DAF +H++
Sbjct: 72  VVVFSDNYASSKWCLEELAKILECKKVKGQMVIPVFYRVDPSHVRNQTGSFADAFARHDQ 131

Query: 131 QFKDMPEKIQIWRA 144
             K+  EK+  WRA
Sbjct: 132 LLKEKMEKVLNWRA 145

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357486483|ref|XP_003613529.1| TMV resistance protein N [Medicago truncatula] gi|355514864|gb|AES96487.1| TMV resistance protein N [Medicago truncatula] gi|388497304|gb|AFK36718.1| unknown [Medicago truncatula] gi|388511843|gb|AFK43983.1| unknown [Medicago truncatula]

 Score =  194 bits (494), Expect = 4e-47,   Method: Compositional matrix adjust.
 Identities = 89/143 (62%), Positives = 111/143 (77%)

Query: 1   MASSSFGLTSQSKYDVFLSFRGEDTRDNFTSHLHAALCRKKIKTFIDEELNRGDEISPAI 60
           MA S+   T Q K++VFLSFRGEDTR  FTSHLHA L R  + T+ID  L RGDEIS A+
Sbjct: 1   MAWSTSSNTPQQKHEVFLSFRGEDTRYTFTSHLHATLTRLDVGTYIDYHLQRGDEISSAL 60

Query: 61  LKAIEGSKITVIIFSKNYASSKWCLDELVKILECHKMNSQMVVPVFYRIDPSDVRKQSGR 120
           L+AIE + ++V++FSKNY +SKWCLDELVKILEC KM  Q+V+P+FY I+PSDVR Q+G 
Sbjct: 61  LRAIEEASLSVVVFSKNYGNSKWCLDELVKILECKKMRGQIVLPIFYDIEPSDVRNQTGS 120

Query: 121 FKDAFVKHEEQFKDMPEKIQIWR 143
           + DAFVKHEE+F    E++Q WR
Sbjct: 121 YADAFVKHEERFHGNLERVQKWR 143

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224145016|ref|XP_002325496.1| tir-nbs-lrr resistance protein [Populus trichocarpa] gi|222862371|gb|EEE99877.1| tir-nbs-lrr resistance protein [Populus trichocarpa]

 Score =  193 bits (491), Expect = 7e-47,   Method: Compositional matrix adjust.
 Identities = 94/144 (65%), Positives = 116/144 (80%), Gaps = 1/144 (0%)

Query: 1   MASSSFGLTSQSKYDVFLSFRGEDTRDNFTSHLHAALCRKKIKTFIDEELNRGDEISPAI 60
           MASSS  +  + KYDVFLSFRGEDTR+NFTSHL+ ALCRKKIKTFID+ L RG+EI+PA+
Sbjct: 1   MASSS-SVAHKRKYDVFLSFRGEDTRNNFTSHLYDALCRKKIKTFIDDGLERGEEITPAL 59

Query: 61  LKAIEGSKITVIIFSKNYASSKWCLDELVKILECHKMNSQMVVPVFYRIDPSDVRKQSGR 120
           LK IE S+I+V+IFSKNYASS WC+DELVKILEC +   Q+V+PVFY +DPSDV +Q+G 
Sbjct: 60  LKKIEESRISVVIFSKNYASSPWCVDELVKILECKETCGQIVLPVFYHVDPSDVDEQTGS 119

Query: 121 FKDAFVKHEEQFKDMPEKIQIWRA 144
           F +AF + E  FK   +K+  WRA
Sbjct: 120 FGNAFSELENIFKGKMDKVPRWRA 143

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224145030|ref|XP_002325501.1| tir-nbs-lrr resistance protein [Populus trichocarpa] gi|222862376|gb|EEE99882.1| tir-nbs-lrr resistance protein [Populus trichocarpa]

 Score =  192 bits (488), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 92/144 (63%), Positives = 116/144 (80%), Gaps = 1/144 (0%)

Query: 1   MASSSFGLTSQSKYDVFLSFRGEDTRDNFTSHLHAALCRKKIKTFIDEELNRGDEISPAI 60
           MASSS  +  + KYDVFLSFRG+DTR+NFTSHL+ ALCRKKIKTFID+ L RG EI+PA+
Sbjct: 1   MASSS-AVAHKWKYDVFLSFRGKDTRNNFTSHLYDALCRKKIKTFIDDRLERGGEITPAL 59

Query: 61  LKAIEGSKITVIIFSKNYASSKWCLDELVKILECHKMNSQMVVPVFYRIDPSDVRKQSGR 120
           LK IE S+I+V+IFSKNYASS WC+DELVKILEC +   Q+V+PVFY ++PSDV +Q+G 
Sbjct: 60  LKTIEESRISVVIFSKNYASSPWCVDELVKILECKETYGQIVLPVFYHVNPSDVDEQTGS 119

Query: 121 FKDAFVKHEEQFKDMPEKIQIWRA 144
           F +AF + E+ FK   +K+  WRA
Sbjct: 120 FGNAFAELEKNFKGKMDKVPRWRA 143

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255555349|ref|XP_002518711.1| leucine-rich repeat containing protein, putative [Ricinus communis] gi|223542092|gb|EEF43636.1| leucine-rich repeat containing protein, putative [Ricinus communis]

 Score =  189 bits (481), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 87/136 (63%), Positives = 107/136 (78%)

Query: 9   TSQSKYDVFLSFRGEDTRDNFTSHLHAALCRKKIKTFIDEELNRGDEISPAILKAIEGSK 68
           T + KYDVFL+FRGEDTR NFTSHLH AL +  I TFID EL RG+ +SP++LKAIE SK
Sbjct: 18  TCKRKYDVFLNFRGEDTRINFTSHLHDALLKNNILTFIDNELVRGEALSPSLLKAIEESK 77

Query: 69  ITVIIFSKNYASSKWCLDELVKILECHKMNSQMVVPVFYRIDPSDVRKQSGRFKDAFVKH 128
           I+V+I S+NY  SKWCL+ELVKILEC K+N QMV+PVFY++DPS VR Q+G F DAF +H
Sbjct: 78  ISVVILSENYPYSKWCLEELVKILECMKINGQMVIPVFYKVDPSHVRNQTGSFADAFARH 137

Query: 129 EEQFKDMPEKIQIWRA 144
           EE      +K++ WRA
Sbjct: 138 EESLLVTEDKVKSWRA 153

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224127917|ref|XP_002329209.1| tir-nbs-lrr resistance protein [Populus trichocarpa] gi|222870990|gb|EEF08121.1| tir-nbs-lrr resistance protein [Populus trichocarpa]

 Score =  189 bits (479), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 90/144 (62%), Positives = 113/144 (78%), Gaps = 1/144 (0%)

Query: 1   MASSSFGLTSQSKYDVFLSFRGEDTRDNFTSHLHAALCRKKIKTFIDEELNRGDEISPAI 60
           M SSS  +  + KYDVFLSFRG+DTRDNF SHL  ALCRK+IKTFID++L RG+EI+ A+
Sbjct: 1   MVSSS-AVAQKWKYDVFLSFRGKDTRDNFVSHLRDALCRKQIKTFIDDKLERGEEITGAL 59

Query: 61  LKAIEGSKITVIIFSKNYASSKWCLDELVKILECHKMNSQMVVPVFYRIDPSDVRKQSGR 120
           L+ IE S+I+VIIFS+NYASS WC+DELVKILEC K   Q+V+PVFY +DPSDV +Q+G 
Sbjct: 60  LRTIEESRISVIIFSRNYASSPWCVDELVKILECKKAYGQIVLPVFYHVDPSDVDQQTGS 119

Query: 121 FKDAFVKHEEQFKDMPEKIQIWRA 144
           F +AF + E  FK   +K+  WRA
Sbjct: 120 FGNAFAELERNFKQKMDKVPRWRA 143

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|317106744|dbj|BAJ53239.1| JHS03A10.2 [Jatropha curcas]

 Score =  187 bits (476), Expect = 4e-45,   Method: Compositional matrix adjust.
 Identities = 88/134 (65%), Positives = 108/134 (80%)

Query: 11  QSKYDVFLSFRGEDTRDNFTSHLHAALCRKKIKTFIDEELNRGDEISPAILKAIEGSKIT 70
           Q +YDVFLSFRGEDTRD+FTSHL+AALC KKI+TFID  L RG EIS ++LKAIE SKI+
Sbjct: 7   QERYDVFLSFRGEDTRDSFTSHLYAALCDKKIQTFIDNNLVRGKEISSSLLKAIEESKIS 66

Query: 71  VIIFSKNYASSKWCLDELVKILECHKMNSQMVVPVFYRIDPSDVRKQSGRFKDAFVKHEE 130
           V I S+NYASSKWCL+EL +I++C K N Q+V+PVFYRI PSDVR Q+G F DAF ++E+
Sbjct: 67  VPILSENYASSKWCLEELAEIIKCMKKNGQIVIPVFYRIRPSDVRNQTGSFHDAFARYEK 126

Query: 131 QFKDMPEKIQIWRA 144
                 +K+Q WRA
Sbjct: 127 SLMVNKDKVQRWRA 140

Source: Jatropha curcas

Species: Jatropha curcas

Genus: Jatropha

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357486467|ref|XP_003613521.1| TMV resistance protein N [Medicago truncatula] gi|355514856|gb|AES96479.1| TMV resistance protein N [Medicago truncatula]

 Score =  187 bits (475), Expect = 6e-45,   Method: Compositional matrix adjust.
 Identities = 87/141 (61%), Positives = 107/141 (75%)

Query: 3   SSSFGLTSQSKYDVFLSFRGEDTRDNFTSHLHAALCRKKIKTFIDEELNRGDEISPAILK 62
           S+SF    Q    VFLSFRGEDTR  FTSHLHA L R K+ T+ID  L RGDEIS  +L 
Sbjct: 4   STSFPPHHQKHGQVFLSFRGEDTRYTFTSHLHATLTRLKVGTYIDYNLQRGDEISSTLLM 63

Query: 63  AIEGSKITVIIFSKNYASSKWCLDELVKILECHKMNSQMVVPVFYRIDPSDVRKQSGRFK 122
           AIE +K++++IFSKNY +SKWCLDELVKILEC KM  Q+++P+FY IDPS VR Q+G + 
Sbjct: 64  AIEEAKVSIVIFSKNYGNSKWCLDELVKILECKKMKGQILLPIFYDIDPSHVRNQTGSYA 123

Query: 123 DAFVKHEEQFKDMPEKIQIWR 143
           +AFVKHE+QF+   EK+Q WR
Sbjct: 124 EAFVKHEKQFQGKLEKVQTWR 144

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	315
UNIPROTKB|Q40392	1144	N "TMV resistance protein N" [	0.447	0.123	0.541	2.8e-36
TAIR|locus:2130319	796	RLM3 "RESISTANCE TO LEPTOSPHAE	0.368	0.145	0.572	1.9e-32
TAIR|locus:2118106	1219	AT4G12010 [Arabidopsis thalian	0.444	0.114	0.531	3.4e-32
TAIR|locus:1006230150	313	AT2G20142 [Arabidopsis thalian	0.4	0.402	0.526	7.7e-32
TAIR|locus:2175075	1068	AT5G41750 [Arabidopsis thalian	0.444	0.131	0.475	1.4e-31
TAIR|locus:2151491	1123	AT5G46450 [Arabidopsis thalian	0.4	0.112	0.551	6.8e-31
TAIR|locus:2032723	275	AT1G72920 [Arabidopsis thalian	0.415	0.476	0.518	6.9e-31
TAIR|locus:2032753	371	AT1G72940 [Arabidopsis thalian	0.415	0.353	0.511	1.4e-30
TAIR|locus:2032597	379	AT1G72950 [Arabidopsis thalian	0.409	0.340	0.5	3e-30
TAIR|locus:2098145	1240	AT3G44630 [Arabidopsis thalian	0.406	0.103	0.446	4.3e-30

UNIPROTKB|Q40392 N "TMV resistance protein N" [Nicotiana glutinosa (taxid:35889)]

 Score = 376 (137.4 bits), Expect = 2.8e-36, Sum P(2) = 2.8e-36
 Identities = 78/144 (54%), Positives = 99/144 (68%)

Query:     1 MASSSFGLTSQSKYDVFLSFRGEDTRDNFTSHLHAALCRKKIKTFIDEE-LNRGDEISPA 59
             MASSS   +S+  YDVFLSFRGEDTR  FTSHL+  L  K IKTF D++ L  G  I   
Sbjct:     1 MASSSS--SSRWSYDVFLSFRGEDTRKTFTSHLYEVLNDKGIKTFQDDKRLEYGATIPGE 58

Query:    60 ILKAIEGSKITVIIFSKNYASSKWCLDELVKILECHKMNSQMVVPVFYRIDPSDVRKQSG 119
             + KAIE S+  +++FS+NYA+S+WCL+ELVKI+EC     Q V+P+FY +DPS VR Q  
Sbjct:    59 LCKAIEESQFAIVVFSENYATSRWCLNELVKIMECKTRFKQTVIPIFYDVDPSHVRNQKE 118

Query:   120 RFKDAFVKHEEQFKDMPEKIQIWR 143
              F  AF +HE ++KD  E IQ WR
Sbjct:   119 SFAKAFEEHETKYKDDVEGIQRWR 142

GO:0005515 "protein binding" evidence=IPI

TAIR|locus:2130319 RLM3 "RESISTANCE TO LEPTOSPHAERIA MACULANS 3" [Arabidopsis thaliana (taxid:3702)]

 Score = 347 (127.2 bits), Expect = 1.9e-32, Sum P(2) = 1.9e-32
 Identities = 67/117 (57%), Positives = 86/117 (73%)

Query:     9 TSQSKYDVFLSFRGEDTRDNFTSHLHAALCRKKIKTFIDEELNRGDEISPAILKAIEGSK 68
             +SQS YDVF +FRGED R +  SHL   L RK I TF D  + R  +I+P +L AIE S+
Sbjct:     5 SSQS-YDVFPNFRGEDVRHSLVSHLRKELDRKFINTFNDNRIERSRKITPELLLAIENSR 63

Query:    69 ITVIIFSKNYASSKWCLDELVKILECHKMNSQMVVPVFYRIDPSDVRKQSGRFKDAF 125
             I++++FSKNYASS WCLDELVKI EC++   QMV+P+FY++DPS VRKQ+G F   F
Sbjct:    64 ISLVVFSKNYASSTWCLDELVKIQECYEKLDQMVIPIFYKVDPSHVRKQTGEFGMVF 120

GO:0005622 "intracellular" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0005737 "cytoplasm" evidence=ISM

GO:0006952 "defense response" evidence=IEA;ISS

GO:0007165 "signal transduction" evidence=IEA

GO:0043531 "ADP binding" evidence=IEA

GO:0009817 "defense response to fungus, incompatible interaction" evidence=IMP

GO:0009861 "jasmonic acid and ethylene-dependent systemic resistance" evidence=IMP

GO:2000071 "regulation of defense response by callose deposition" evidence=IMP

GO:0015979 "photosynthesis" evidence=RCA

TAIR|locus:2118106 AT4G12010 [Arabidopsis thaliana (taxid:3702)]

 Score = 365 (133.5 bits), Expect = 3.4e-32, P = 3.4e-32
 Identities = 77/145 (53%), Positives = 97/145 (66%)

Query:     1 MASSSFGLTSQSKYDVFLSFRGEDTRDNFTSHLHAALCRKKIKTFIDEELNRGDEISPAI 60
             M SSS    S +++DVFLSFRG DTR+NFT HL  AL  + I +FID+ L RGD ++ A+
Sbjct:     1 MESSS---PSSAEFDVFLSFRGFDTRNNFTGHLQKALRLRGIDSFIDDRLRRGDNLT-AL 56

Query:    61 LKAIEGSKITVIIFSKNYASSKWCLDELVKILECHKMNSQMVVPVFYRIDPSDVRKQSGR 120
                IE SKI +I+FS NYA+S WCL ELVKILEC   N Q+VVP+FY++D SDV KQ   
Sbjct:    57 FDRIEKSKIAIIVFSTNYANSAWCLRELVKILECRNSNQQLVVPIFYKVDKSDVEKQRNS 116

Query:   121 FKDAFVKHEEQFKDM-PEKIQIWRA 144
             F   F   E  F  + PE+I  W+A
Sbjct:   117 FAVPFKLPELTFPGVTPEEISSWKA 141

GO:0005634 "nucleus" evidence=ISM

GO:0006952 "defense response" evidence=IEA;ISS

GO:0007165 "signal transduction" evidence=IEA

GO:0043531 "ADP binding" evidence=IEA

GO:0006612 "protein targeting to membrane" evidence=RCA

GO:0009963 "positive regulation of flavonoid biosynthetic process" evidence=RCA

GO:0010363 "regulation of plant-type hypersensitive response" evidence=RCA

TAIR|locus:1006230150 AT2G20142 [Arabidopsis thaliana (taxid:3702)]

 Score = 349 (127.9 bits), Expect = 7.7e-32, P = 7.7e-32
 Identities = 69/131 (52%), Positives = 92/131 (70%)

Query:    13 KYDVFLSFRGEDTRDNFTSHLHAALCRKKIKTFIDEELNRGDEISPAILKAIEGSKITVI 72
             K+DVF+SFR +DTRDNF SHL   L RK+IKTF+ +EL   DE     LKAIE SKI+VI
Sbjct:     8 KHDVFISFRSKDTRDNFVSHLCGCLRRKRIKTFLYDELP-ADERYEESLKAIEVSKISVI 66

Query:    73 IFSKNYASSKWCLDELVKILECHKMNSQMVVPVFYRIDPSDVRKQSGRFKDAFVKHEEQF 132
             +FS+N+  S+WCLDE+V IL+C +   Q+V+PV Y +DP D+  Q+G F DAF K     
Sbjct:    67 VFSENFGDSRWCLDEVVAILKCKEKFGQIVIPVLYHVDPLDIENQTGSFGDAFAKR---- 122

Query:   133 KDMPEKIQIWR 143
             +D  E++Q W+
Sbjct:   123 RDKAEQLQEWK 133

GO:0005622 "intracellular" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM

GO:0007165 "signal transduction" evidence=IEA

TAIR|locus:2175075 AT5G41750 [Arabidopsis thaliana (taxid:3702)]

 Score = 334 (122.6 bits), Expect = 1.4e-31, Sum P(2) = 1.4e-31
 Identities = 68/143 (47%), Positives = 95/143 (66%)

Query:     1 MASSSFGLTSQSKYDVFLSFRGEDTRDNFTSHLHAALCRKKIKTFIDEELNRGDEISPAI 60
             MA SS  L+   +Y VF SF G D R  F SHLH+    K I TF D++++RG  I P +
Sbjct:     1 MALSS-SLSCIKRYQVFSSFHGPDVRKGFLSHLHSVFASKGITTFNDQKIDRGQTIGPEL 59

Query:    61 LKAIEGSKITVIIFSKNYASSKWCLDELVKILECHKMNSQMVVPVFYRIDPSDVRKQSGR 120
             ++ I  +++++++ SK YASS WCLDELV+IL+C +   Q+V+ VFY +DPSDV+KQSG 
Sbjct:    60 IQGIREARVSIVVLSKKYASSSWCLDELVEILKCKEALGQIVMTVFYEVDPSDVKKQSGV 119

Query:   121 FKDAFVKHEEQFKDMPEKIQIWR 143
             F +AF K   Q K+   KI+ WR
Sbjct:   120 FGEAFEK-TCQGKNEEVKIR-WR 140

GO:0000166 "nucleotide binding" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0006952 "defense response" evidence=IEA;ISS

GO:0007165 "signal transduction" evidence=IEA

GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA

GO:0043531 "ADP binding" evidence=IEA

TAIR|locus:2151491 AT5G46450 [Arabidopsis thaliana (taxid:3702)]

 Score = 343 (125.8 bits), Expect = 6.8e-31, Sum P(2) = 6.8e-31
 Identities = 70/127 (55%), Positives = 88/127 (69%)

Query:     1 MASSSFGLTSQSKYDVFLSFRGEDTRDNFTSHLHAALCRKKIKTFIDEELNRGDEISPAI 60
             MASSS    + S YDVF SF GED R  F SH    L RK I TF D E+ R   I+P +
Sbjct:     1 MASSSSSSRNWS-YDVFPSFSGEDVRKTFLSHFLRELERKSIITFKDNEMERSQSIAPEL 59

Query:    61 LKAIEGSKITVIIFSKNYASSKWCLDELVKILECHKMNSQMVVPVFYRIDPSDVRKQSGR 120
             ++AI+ S+I VI+FSKNYASS WCL+EL++I+ C+K   Q V+PVFY +DPS +RKQSG 
Sbjct:    60 VEAIKDSRIAVIVFSKNYASSSWCLNELLEIMRCNKYLGQQVIPVFYYLDPSHLRKQSGE 119

Query:   121 FKDAFVK 127
             F +AF K
Sbjct:   120 FGEAFKK 126

GO:0000166 "nucleotide binding" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0006952 "defense response" evidence=IEA;ISS

GO:0007165 "signal transduction" evidence=IEA

GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA

GO:0043531 "ADP binding" evidence=IEA

TAIR|locus:2032723 AT1G72920 [Arabidopsis thaliana (taxid:3702)]

 Score = 340 (124.7 bits), Expect = 6.9e-31, P = 6.9e-31
 Identities = 69/133 (51%), Positives = 90/133 (67%)

Query:    12 SKYDVFLSFRGEDTRDNFTSHLHAALCRKKIKTFIDE-ELNRGDEISPAILKAIEGSKIT 70
             +KYDVFLSFRG DTR NF S L+  L R+KI+TF D+ EL  G  ISP + +AIE SK  
Sbjct:     7 TKYDVFLSFRGLDTRRNFISFLYKELVRRKIRTFKDDKELENGRRISPELKRAIEESKFA 66

Query:    71 VIIFSKNYASSKWCLDELVKILECHKMNSQMVVPVFYRIDPSDVRKQSGRFKDAFVKHEE 130
             V++ S NYA+S WCLDELVKI++     S  V+P+FY +DP  +R+Q G   + F KHE 
Sbjct:    67 VVVVSVNYAASPWCLDELVKIMDFENKGSITVMPIFYGVDPCHLRRQIGDVAEQFKKHEA 126

Query:   131 QFKDMPEKIQIWR 143
             + +D  EK+  WR
Sbjct:   127 REEDH-EKVASWR 138

GO:0005622 "intracellular" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM

GO:0006952 "defense response" evidence=ISS

GO:0007165 "signal transduction" evidence=IEA

GO:0009611 "response to wounding" evidence=IEP

TAIR|locus:2032753 AT1G72940 [Arabidopsis thaliana (taxid:3702)]

 Score = 337 (123.7 bits), Expect = 1.4e-30, P = 1.4e-30
 Identities = 68/133 (51%), Positives = 89/133 (66%)

Query:    12 SKYDVFLSFRGEDTRDNFTSHLHAALCRKKIKTFIDE-ELNRGDEISPAILKAIEGSKIT 70
             +KYDVFLSFRG DTR NF S L+    R+KI+TF D+ EL  G  ISP + +AIE SK  
Sbjct:     7 TKYDVFLSFRGVDTRRNFISFLYKEFVRRKIRTFKDDKELENGRRISPELKRAIEESKFA 66

Query:    71 VIIFSKNYASSKWCLDELVKILECHKMNSQMVVPVFYRIDPSDVRKQSGRFKDAFVKHEE 130
             V++ S NYA+S WCLDELVKI++     S  V+P+FY +DP  +R+Q G   + F KHE 
Sbjct:    67 VVVVSVNYAASPWCLDELVKIMDFENKGSITVMPIFYGVDPCHLRRQIGDVAEQFKKHEA 126

Query:   131 QFKDMPEKIQIWR 143
             + +D  EK+  WR
Sbjct:   127 REEDH-EKVASWR 138

GO:0005622 "intracellular" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM

GO:0006952 "defense response" evidence=ISS

GO:0007165 "signal transduction" evidence=IEA

GO:0043531 "ADP binding" evidence=IEA

GO:0006914 "autophagy" evidence=RCA

TAIR|locus:2032597 AT1G72950 [Arabidopsis thaliana (taxid:3702)]

 Score = 334 (122.6 bits), Expect = 3.0e-30, P = 3.0e-30
 Identities = 66/132 (50%), Positives = 92/132 (69%)

Query:    13 KYDVFLSFRGEDTRDNFTSHLHAALCRKKIKTFIDE-ELNRGDEISPAILKAIEGSKITV 71
             K+DVFLSFRG DTR +F S L+  L R+ I+TF D+ EL  G  I+P +++AIEGS+  V
Sbjct:    10 KFDVFLSFRGLDTRRSFISFLYKELIRRNIRTFKDDKELKNGRRITPELIRAIEGSRFAV 69

Query:    72 IIFSKNYASSKWCLDELVKILECHKMNSQMVVPVFYRIDPSDVRKQSGRFKDAFVKHEEQ 131
             ++ S NYA+S+WCL+ELVKI++   M S  V+P+FY +DP  VR+Q G   + F KHE +
Sbjct:    70 VVVSVNYAASRWCLEELVKIMDFENMGSLKVMPIFYGVDPCHVRRQIGEVAEQFKKHEGR 129

Query:   132 FKDMPEKIQIWR 143
              +D  EK+  WR
Sbjct:   130 -EDH-EKVLSWR 139

GO:0005622 "intracellular" evidence=IEA

GO:0006952 "defense response" evidence=IEA;ISS

GO:0007165 "signal transduction" evidence=IEA

GO:0043531 "ADP binding" evidence=IEA

TAIR|locus:2098145 AT3G44630 [Arabidopsis thaliana (taxid:3702)]

 Score = 318 (117.0 bits), Expect = 4.3e-30, Sum P(2) = 4.3e-30
 Identities = 59/132 (44%), Positives = 87/132 (65%)

Query:    13 KYDVFLSFRGEDTRDNFTSHLHAALCRKKIKTFIDEELNRGDEISPAILKAIEGSKITVI 72
             K+DVF SF G D R  F SH+  +  RK I TFID  + R   I P + +AI+GSKI ++
Sbjct:    93 KHDVFPSFHGADVRRTFLSHIMESFRRKGIDTFIDNNIERSKSIGPELKEAIKGSKIAIV 152

Query:    73 IFSKNYASSKWCLDELVKILECHKMNSQMVVPVFYRIDPSDVRKQSGRFKDAFVKHEEQF 132
             + S+ YASS WCLDEL +I++C +M  Q+V+ +FY ++P+D++KQ+G F  AF K     
Sbjct:   153 LLSRKYASSSWCLDELAEIMKCRQMVGQIVMTIFYEVEPTDIKKQTGEFGKAFTK---TC 209

Query:   133 KDMP-EKIQIWR 143
             +  P E+++ WR
Sbjct:   210 RGKPKEQVERWR 221

GO:0000166 "nucleotide binding" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM

GO:0006952 "defense response" evidence=IEA;ISS;TAS

GO:0007165 "signal transduction" evidence=IEA

GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA

GO:0043531 "ADP binding" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	315
pfam01582	135	pfam01582, TIR, TIR domain	1e-44
smart00255	140	smart00255, TIR, Toll - interleukin 1 - resistance	3e-40
PLN03210	1153	PLN03210, PLN03210, Resistant to P	6e-40
pfam13676	102	pfam13676, TIR_2, TIR domain	2e-14
PLN03194	187	PLN03194, PLN03194, putative disease resistance pr	2e-13

>gnl|CDD|216585 pfam01582, TIR, TIR domain

 Score =  148 bits (375), Expect = 1e-44
 Identities = 61/131 (46%), Positives = 88/131 (67%), Gaps = 3/131 (2%)

Query: 16  VFLSFRGEDTRDNFTSHLHAALCRKKIKTFIDE-ELNRGDEISPAILKAIEGSKITVIIF 74
           VF+SF G+D RD F SHL   L  K IK  ID+ +   G+ I   + +AIE S+  ++IF
Sbjct: 1   VFVSFSGKDDRDTFVSHLLKELEEKGIKLCIDDRDELPGESILENLFEAIEKSRRAIVIF 60

Query: 75  SKNYASSKWCLDELVKILEC--HKMNSQMVVPVFYRIDPSDVRKQSGRFKDAFVKHEEQF 132
           S NYASS+WCLDELV+I++C       ++++P+FY++DPSDVR QSG+F  AF+K  +  
Sbjct: 61  SSNYASSEWCLDELVEIVKCALEGGGKKVILPIFYKVDPSDVRPQSGKFGKAFLKTLKWS 120

Query: 133 KDMPEKIQIWR 143
            D  +KI+ W+
Sbjct: 121 GDKEDKIRFWK 131

The Toll/interleukin-1 receptor (TIR) homology domain is an intracellular signalling domain found in MyD88, interleukin 1 receptor and the Toll receptor. It contains three highly-conserved regions, and mediates protein-protein interactions between the Toll-like receptors (TLRs) and signal-transduction components. TIR-like motifs are also found in plant proteins thought to be involved in resistance to disease. When activated, TIR domains recruit cytoplasmic adaptor proteins MyD88 and TOLLIP (Toll interacting protein). In turn, these associate with various kinases to set off signalling cascades. Length = 135

>gnl|CDD|214587 smart00255, TIR, Toll - interleukin 1 - resistance

 Score =  137 bits (346), Expect = 3e-40
 Identities = 57/133 (42%), Positives = 79/133 (59%), Gaps = 4/133 (3%)

Query: 13  KYDVFLSFRG-EDTRDNFTSHLHAALCRKKIKTFIDEELNRGDEISPAILKAIEGSKITV 71
           +YDVF+S+ G ED R+ F SHL   L    +  FID+    G      I +AIE S+I +
Sbjct: 1   EYDVFISYSGKEDVRNEFLSHLLEKLRGYGLCVFIDDFE-PGGGDLEEIDEAIEKSRIAI 59

Query: 72  IIFSKNYASSKWCLDELVKILECHK-MNSQMVVPVFYRIDPSDVRKQSGRFKDAFVKHEE 130
           ++ S NYA S+WCLDELV  LE         V+P+FY + PSDVRKQ G+F+  F K+  
Sbjct: 60  VVLSPNYAESEWCLDELVAALENALEEGGLRVIPIFYEVIPSDVRKQPGKFRKVFKKNYL 119

Query: 131 QFKDMPEKIQIWR 143
           ++ +  EK Q W+
Sbjct: 120 KWPE-DEKEQFWK 131

Length = 140

>gnl|CDD|215633 PLN03210, PLN03210, Resistant to P

 Score =  148 bits (376), Expect = 6e-40
 Identities = 74/146 (50%), Positives = 93/146 (63%), Gaps = 9/146 (6%)

Query: 1   MASSSFGLTSQSK---YDVFLSFRGEDTRDNFTSHLHAALCRKKIKTFIDEELNRGDEIS 57
           MASSS    S S+   YDVF SF GED R  F SH    L RK I  F D E+ R   + 
Sbjct: 1   MASSS----SSSRNWVYDVFPSFSGEDVRITFLSHFLKELDRKLIIAFKDNEIERSQSLD 56

Query: 58  PAILKAIEGSKITVIIFSKNYASSKWCLDELVKILECHKMNSQMVVPVFYRIDPSDVRKQ 117
           P + +AI  S+I V++FSKNYASS WCL+EL++I+ C +   Q+V+PVFY +DPS VRKQ
Sbjct: 57  PELKQAIRDSRIAVVVFSKNYASSSWCLNELLEIVRCKEELGQLVIPVFYGLDPSHVRKQ 116

Query: 118 SGRFKDAFVKHEEQFKDMPEKIQIWR 143
           +G F +AF K   Q K   EKIQ W+
Sbjct: 117 TGDFGEAFEK-TCQNKTEDEKIQ-WK 140

syringae 6; Provisional. Length = 1153

>gnl|CDD|222311 pfam13676, TIR_2, TIR domain

 Score = 68.0 bits (167), Expect = 2e-14
 Identities = 24/99 (24%), Positives = 48/99 (48%), Gaps = 8/99 (8%)

Query: 16  VFLSFRGEDTRDNFTSHLHAALCRKKIKTFIDEELNRGDEISPAILKAIEGSKITVIIFS 75
           VF+S+   D    +   L  AL    I+ ++D ++  G++    I +A+  + + +++ S
Sbjct: 1   VFISYASADRE--WAEWLADALEAAGIRVWLDWDIPPGEDWRDEIEEALRSADVVLVLLS 58

Query: 76  KNYASSKWCLDELVKILECHKMNSQMVVPVFYRIDPSDV 114
             Y +S WC  E    LE  K     ++PV  R++  ++
Sbjct: 59  PAYLASPWCRAEWGAALERGK----RLIPV--RLEDCEL 91

This is a family of bacterial Toll-like receptors. Length = 102

>gnl|CDD|215626 PLN03194, PLN03194, putative disease resistance protein; Provisional

 Score = 67.2 bits (164), Expect = 2e-13
 Identities = 37/108 (34%), Positives = 58/108 (53%), Gaps = 5/108 (4%)

Query: 9   TSQSKYDVFLSFRGEDTRDNFTSHLHAALCRKKIKTFID-EELNRGDEISPAILKAIEGS 67
           +S    DVF++ RG DT+    + L+  L R  ++ F+D + +  GD++   I  AI   
Sbjct: 22  SSAKPCDVFINHRGIDTKRTIATLLYDHLSRLNLRPFLDNKNMKPGDKLFDKINSAIRNC 81

Query: 68  KITVIIFSKNYASSKWCLDELVKILECHKMNSQMVVPVFYRIDPSDVR 115
           K+ V +FS  Y  S +CL EL  I+E  K     V+P+F  + PS +R
Sbjct: 82  KVGVAVFSPRYCESYFCLHELALIMESKK----RVIPIFCDVKPSQLR 125

Length = 187

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	315
PLN03210	1153	Resistant to P. syringae 6; Provisional	100.0
PLN03194	187	putative disease resistance protein; Provisional	100.0
PF01582	141	TIR: TIR domain; InterPro: IPR000157 In Drosophila	99.91
smart00255	140	TIR Toll - interleukin 1 - resistance.	99.89
PF13676	102	TIR_2: TIR domain; PDB: 3H16_B 3UB4_A 2Y92_A 3UB3_	99.66
KOG4658	889	consensus Apoptotic ATPase [Signal transduction me	98.96
PF00931	287	NB-ARC: NB-ARC domain; InterPro: IPR002182 This is	98.85
KOG3678	832	consensus SARM protein (with sterile alpha and arm	98.74
PF08937	130	DUF1863: MTH538 TIR-like domain (DUF1863); InterPr	98.34
PF08357	150	SEFIR: SEFIR domain; InterPro: IPR013568 This doma	97.56
PF10137	125	TIR-like: Predicted nucleotide-binding protein con	95.58
cd01128	249	rho_factor Transcription termination factor rho is	95.01
PF13401	131	AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S	94.87
PRK09376	416	rho transcription termination factor Rho; Provisio	94.76
TIGR00767	415	rho transcription termination factor Rho. Members	94.59
TIGR02928	365	orc1/cdc6 family replication initiation protein. M	93.31
PRK00411	394	cdc6 cell division control protein 6; Reviewed	93.29
TIGR03015	269	pepcterm_ATPase putative secretion ATPase, PEP-CTE	93.05
COG2256	436	MGS1 ATPase related to the helicase subunit of the	91.58
PF13271	83	DUF4062: Domain of unknown function (DUF4062)	91.12
COG1474	366	CDC6 Cdc6-related protein, AAA superfamily ATPase	91.01
COG4916	329	Uncharacterized protein containing a TIR (Toll-Int	89.06
PF05729	166	NACHT: NACHT domain	85.85
PTZ00112	1164	origin recognition complex 1 protein; Provisional	81.6
PF05014	113	Nuc_deoxyrib_tr: Nucleoside 2-deoxyribosyltransfer	81.23
PF13191	185	AAA_16: AAA ATPase domain; PDB: 2V1U_A.	80.97

>PLN03210 Resistant to P

Probab=100.00  E-value=8.1e-57  Score=487.38  Aligned_cols=277  Identities=29%  Similarity=0.390  Sum_probs=235.0

Q ss_pred             CCCCCCCCCCCCceeEEEccccccCccchHHHHHHHHhhCCCeEEeeCccCCCCcchHHHHHHHhhcCeEEEEeeccccC
Q 039731            1 MASSSFGLTSQSKYDVFLSFRGEDTRDNFTSHLHAALCRKKIKTFIDEELNRGDEISPAILKAIEGSKITVIIFSKNYAS   80 (315)
Q Consensus         1 m~~~s~s~~~~~~ydVFIS~~~~D~r~~fv~~L~~~L~~~gi~~f~D~~~~~G~~i~~~i~~aI~~S~~~Ivv~S~~y~~   80 (315)
                      ||||||| ++.++|||||||||+|+|++|++||+++|.++||++|.|+++++|+.|.+++.+||++|+++|||||++|++
T Consensus         1 ~~~~~~~-~~~~~~~vf~sfrg~d~r~~f~~hl~~~l~~~~i~~f~d~~~~~g~~~~~~l~~~i~~s~~~ivv~s~~ya~   79 (1153)
T PLN03210          1 MASSSSS-SRNWVYDVFPSFSGEDVRITFLSHFLKELDRKLIIAFKDNEIERSQSLDPELKQAIRDSRIAVVVFSKNYAS   79 (1153)
T ss_pred             CCCCCCC-CCCCCCcEEeeCCCcccccCHHHHHHHHHHHCCCeEEccCCccCCCcccHHHHHHHHhCeEEEEEecCCccc
Confidence            6776654 468999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ChHhHHHHHHHHHHhhhCCCeeeeEEEecCCcccccccCchhHHHHHHHHhhcCChHHHHHHHHHHHHHhcccCCCCccC
Q 039731           81 SKWCLDELVKILECHKMNSQMVVPVFYRIDPSDVRKQSGRFKDAFVKHEEQFKDMPEKIQIWRAFSVQYRCFEKGPKVHS  160 (315)
Q Consensus        81 S~wcl~El~~i~~~~~~~~~~ViPIfy~v~ps~V~~q~g~f~~~f~~~~~~~~~~~e~v~~W~~aL~~v~~i~g~~~~~~  160 (315)
                      |.||++||++|++|+++.+++|+||||+|+|+|||+|+|.||++|.+++++.  +.+++++||+||++||+++|+.....
T Consensus        80 s~wcl~el~~i~~~~~~~~~~v~pvfy~v~p~~v~~~~g~f~~~f~~~~~~~--~~~~~~~w~~al~~~~~~~g~~~~~~  157 (1153)
T PLN03210         80 SSWCLNELLEIVRCKEELGQLVIPVFYGLDPSHVRKQTGDFGEAFEKTCQNK--TEDEKIQWKQALTDVANILGYHSQNW  157 (1153)
T ss_pred             chHHHHHHHHHHHhhhhcCceEEEEEecccHHHHhhccchHHHHHHHHhccc--chhHHHHHHHHHHHHhCcCceecCCC
Confidence            9999999999999999999999999999999999999999999999998764  47899999999999999999753322


Q ss_pred             C-------------------CccccccccCCCCCCceeeeeCCCCCcccceeeeeeeccccccccCCCcc-----chhcc
Q 039731          161 C-------------------GVCPVYAHPNGTKPNTFTVNVLPPNEEECTQIRKLHYDFHDNVGTSGNSE-----SIDRS  216 (315)
Q Consensus       161 ~-------------------~~~~V~~~~Vg~~~r~~~v~~Ll~~~~~~~~l~~i~~d~~~~~GmGGiGK-----~vy~~  216 (315)
                      .                   .+....+.+||++.++.++..++....+.++++||+       ||||+||     ++|++
T Consensus       158 ~~E~~~i~~Iv~~v~~~l~~~~~~~~~~~vG~~~~l~~l~~lL~l~~~~~~vvgI~-------G~gGiGKTTLA~~l~~~  230 (1153)
T PLN03210        158 PNEAKMIEEIANDVLGKLNLTPSNDFEDFVGIEDHIAKMSSLLHLESEEVRMVGIW-------GSSGIGKTTIARALFSR  230 (1153)
T ss_pred             CCHHHHHHHHHHHHHHhhccccCcccccccchHHHHHHHHHHHccccCceEEEEEE-------cCCCCchHHHHHHHHHH
Confidence            2                   233445678999888888887777777778888887       9999999     46788


Q ss_pred             cccccccee-ec---cccC----------CccCHHHHHHHHHHHhcC-CCCCcCChhHHHHHHHHhhCCcEEEEEeeCCC
Q 039731          217 GELEVESIC-RE---QINA----------PQQQRSSLFSHIIAKGGG-LYAFLAPSDHASIQIQRRHIRLKVSLLASKVD  281 (315)
Q Consensus       217 i~~~Fe~~~-~~---~s~~----------~~~gl~~Lq~~LL~~il~-~~~~~~~~~~~~~~i~~rL~~kKvLIVLDDVd  281 (315)
                      +..+|++.| ..   +...          .......+|+++++++++ ....+...    ..++++|++||+||||||||
T Consensus       231 l~~~F~g~vfv~~~~v~~~~~~~~~~~~~~~~~~~~l~~~~l~~il~~~~~~~~~~----~~~~~~L~~krvLLVLDdv~  306 (1153)
T PLN03210        231 LSRQFQSSVFIDRAFISKSMEIYSSANPDDYNMKLHLQRAFLSEILDKKDIKIYHL----GAMEERLKHRKVLIFIDDLD  306 (1153)
T ss_pred             HhhcCCeEEEeeccccccchhhcccccccccchhHHHHHHHHHHHhCCCCcccCCH----HHHHHHHhCCeEEEEEeCCC
Confidence            889999887 21   1110          001245789999999886 34443332    46899999999999999999


Q ss_pred             CCCCcccccC
Q 039731          282 SASSPELSTS  291 (315)
Q Consensus       282 ~~~qle~~~~  291 (315)
                      +.+|++++..
T Consensus       307 ~~~~l~~L~~  316 (1153)
T PLN03210        307 DQDVLDALAG  316 (1153)
T ss_pred             CHHHHHHHHh
Confidence            9999998864

syringae 6; Provisional

>PLN03194 putative disease resistance protein; Provisional

Probab=100.00  E-value=2.8e-41  Score=291.82  Aligned_cols=129  Identities=29%  Similarity=0.493  Sum_probs=120.6

Q ss_pred             CCceeEEEccccccCccchHHHHHHHHhhCCCeEEeeC-ccCCCCcchHHHHHHHhhcCeEEEEeeccccCChHhHHHHH
Q 039731           11 QSKYDVFLSFRGEDTRDNFTSHLHAALCRKKIKTFIDE-ELNRGDEISPAILKAIEGSKITVIIFSKNYASSKWCLDELV   89 (315)
Q Consensus        11 ~~~ydVFIS~~~~D~r~~fv~~L~~~L~~~gi~~f~D~-~~~~G~~i~~~i~~aI~~S~~~Ivv~S~~y~~S~wcl~El~   89 (315)
                      ..+|||||||+|+|+|++|++||+.+|+++||+||+|+ ++.+|+.|.++|.+||++|+++|+||||+|++|.||++||+
T Consensus        24 ~~~yDVFISFrG~DtR~~FvshL~~aL~~~GI~vF~D~~el~~G~~i~~~L~~AIeeSri~IvVfS~~Ya~S~WCLdEL~  103 (187)
T PLN03194         24 AKPCDVFINHRGIDTKRTIATLLYDHLSRLNLRPFLDNKNMKPGDKLFDKINSAIRNCKVGVAVFSPRYCESYFCLHELA  103 (187)
T ss_pred             CCCCcEEEeCCCccccccHHHHHHHHHHHCCCEEEEcCccccCCCcHHHHHHHHHHhCeEEEEEECCCcccchhHHHHHH
Confidence            56899999999999999999999999999999999999 99999999999999999999999999999999999999999


Q ss_pred             HHHHHhhhCCCeeeeEEEecCCcccccc-cCchhHHHHHHHHhhcCChHHHHHHHHHHHHHhcccCCC
Q 039731           90 KILECHKMNSQMVVPVFYRIDPSDVRKQ-SGRFKDAFVKHEEQFKDMPEKIQIWRAFSVQYRCFEKGP  156 (315)
Q Consensus        90 ~i~~~~~~~~~~ViPIfy~v~ps~V~~q-~g~f~~~f~~~~~~~~~~~e~v~~W~~aL~~v~~i~g~~  156 (315)
                      +|+++.    ..||||||+|+|++||+| .|.             .+.+++++||.||++|++++|+.
T Consensus       104 ~I~e~~----~~ViPIFY~VdPsdVr~q~~~~-------------~~~e~v~~Wr~AL~~va~l~G~~  154 (187)
T PLN03194        104 LIMESK----KRVIPIFCDVKPSQLRVVDNGT-------------CPDEEIRRFNWALEEAKYTVGLT  154 (187)
T ss_pred             HHHHcC----CEEEEEEecCCHHHhhccccCC-------------CCHHHHHHHHHHHHHHhcccccc
Confidence            999874    489999999999999997 332             23689999999999999999974

>PF01582 TIR: TIR domain; InterPro: IPR000157 In Drosophila melanogaster the Toll protein is involved in establishment of dorso-ventral polarity in the embryo

Probab=99.91  E-value=6.5e-26  Score=190.41  Aligned_cols=133  Identities=38%  Similarity=0.624  Sum_probs=117.1

Q ss_pred             EEEccccccCccchHHHHHHHHhhC--CCeEEeeC-ccCCCCcchHHHHHHHhhcCeEEEEeeccccCChHhHHHHHHHH
Q 039731           16 VFLSFRGEDTRDNFTSHLHAALCRK--KIKTFIDE-ELNRGDEISPAILKAIEGSKITVIIFSKNYASSKWCLDELVKIL   92 (315)
Q Consensus        16 VFIS~~~~D~r~~fv~~L~~~L~~~--gi~~f~D~-~~~~G~~i~~~i~~aI~~S~~~Ivv~S~~y~~S~wcl~El~~i~   92 (315)
                      |||||++.+.+.+|+++|.++|+++  |+++|+++ |+.+|..+.++|.++|++|+++|+|||++|++|+||+.||..|+
T Consensus         1 vfisy~~~~d~~~~~~~L~~~Le~~~~g~~~c~~~rD~~~G~~~~~~i~~~i~~Sr~~I~VlS~~y~~s~wc~~el~~a~   80 (141)
T PF01582_consen    1 VFISYSGKDDREWFVSHLLPELEERPYGYKLCLDERDFLPGESILDNIQEAIERSRRTIVVLSRNYLSSEWCLFELQEAL   80 (141)
T ss_dssp             EEEEE-GHHGHHHHHHCHHHHHHCTSSTS-EEEHHHCTSSSSCHHHHHHHHHHTEEEEEEEESHHHHHHTHHHHHHHHHH
T ss_pred             cEEEeCCCCcHHHHHHHHHHHHHhCCCCeEEEEechhhcccccccchhhHhhhhceeeEEEeecccccccchhhhhhhhh
Confidence            8999999434588999999999999  99999999 99999999999999999999999999999999999999999999


Q ss_pred             HHhhhCC--CeeeeEEEecCCcccc-cccCchhHHHHHHHHhhcCC--hHHHHHHHHHHHH
Q 039731           93 ECHKMNS--QMVVPVFYRIDPSDVR-KQSGRFKDAFVKHEEQFKDM--PEKIQIWRAFSVQ  148 (315)
Q Consensus        93 ~~~~~~~--~~ViPIfy~v~ps~V~-~q~g~f~~~f~~~~~~~~~~--~e~v~~W~~aL~~  148 (315)
                      ++....+  .+|+||||++.+++++ .+++.|+..|..+......+  ..+...|++++.+
T Consensus        81 ~~~~~~~~~~~Il~v~~~v~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~fW~~l~~~  141 (141)
T PF01582_consen   81 ERLLEEGRDKLILPVFYDVSPSDVRPDQSLRFLLRFLTYLRWPDDDSREDRSWFWKKLRYH  141 (141)
T ss_dssp             HHHHCSTCTTEEEEESSSS-CHHCHTHHHHHHHHHCTHCEETSSSGGGGGHHHHHHHHHHH
T ss_pred             hhccccccccceeeEeccCChhhcChhhhHHHHHHhhhheeCCCCCCccHHHHHHHHHhcC
Confidence            9986644  8999999999999999 79999999998887766543  5788999998753

In addition, members of the Toll family play a key role in innate antibacterial and antifungal immunity in insects as well as in mammals. These proteins are type-I transmembrane receptors that share an intracellular 200 residue domain with the interleukin-1 receptor (IL-1R), the Toll/IL-1R homologous region (TIR). The similarity between Toll-like receptors (LTRs) and IL-1R is not restricted to sequence homology since these proteins also share a similar signalling pathway. They both induce the activation of a Rel type transcription factor via an adaptor protein and a protein kinase []. Interestingly, MyD88, a cytoplasmic adaptor protein found in mammals, contains a TIR domain associated to a DEATH domain (see IPR000488 from INTERPRO) [, , ]. Besides the mammalian and Drosophila melanogaster proteins, a TIR domain is also found in a number of plant proteins implicated in host defence []. As MyD88, these proteins are cytoplasmic. Site directed mutagenesis and deletion analysis have shown that the TIR domain is essential for Toll and IL-1R activities. Sequence analysis have revealed the presence of three highly conserved regions among the different members of the family: box 1 (FDAFISY), box 2 (GYKLC-RD-PG), and box 3 (a conserved W surrounded by basic residues). It has been proposed that boxes 1 and 2 are involved in the binding of proteins involved in signalling, whereas box 3 is primarily involved in directing localization of receptor, perhaps through interactions with cytoskeletal elements [].; GO: 0005515 protein binding, 0007165 signal transduction, 0005622 intracellular; PDB: 3J0A_A 2J67_B 3JRN_A 1FYV_A 1O77_D 1FYX_A 1FYW_A 3OZI_B 1T3G_B 2JS7_A ....

>smart00255 TIR Toll - interleukin 1 - resistance

Probab=99.89  E-value=7.4e-23  Score=170.38  Aligned_cols=137  Identities=39%  Similarity=0.686  Sum_probs=115.4

Q ss_pred             ceeEEEcccc-ccCccchHHHHHHHHhhCCCeEEeeCccCCCCcchHHHHHHHhhcCeEEEEeeccccCChHhHHHHHHH
Q 039731           13 KYDVFLSFRG-EDTRDNFTSHLHAALCRKKIKTFIDEELNRGDEISPAILKAIEGSKITVIIFSKNYASSKWCLDELVKI   91 (315)
Q Consensus        13 ~ydVFIS~~~-~D~r~~fv~~L~~~L~~~gi~~f~D~~~~~G~~i~~~i~~aI~~S~~~Ivv~S~~y~~S~wcl~El~~i   91 (315)
                      +|||||||++ ++....|+.+|...|...|+.+|.|+....|.... +|.++|++|+++|+|+||+|+.|.||..|+..+
T Consensus         1 ~~dvFISys~~~~~~~~~v~~L~~~l~~~~~~v~~d~~~~~~~~~~-~i~~~i~~s~~~i~vlS~~~~~S~w~~~E~~~a   79 (140)
T smart00255        1 EYDVFISYSGKEDVRNEFLSHLLEKLRGYGLCVFIDDFEPGGGDLE-EIDEAIEKSRIAIVVLSPNYAESEWCLDELVAA   79 (140)
T ss_pred             CCeEEEECCCCHHHHHHHHHHHHHHhhcCCcEEEecCcccccchHH-HHHHHHHHCcEEEEEECcccccChhHHHHHHHH
Confidence            5999999999 45557899999999999999999998433333333 999999999999999999999999999999999


Q ss_pred             HHHhhh-CCCeeeeEEEecCCcccccccCchhHHHHHHHHhhcCChHHHHHHHHHHHHHhc
Q 039731           92 LECHKM-NSQMVVPVFYRIDPSDVRKQSGRFKDAFVKHEEQFKDMPEKIQIWRAFSVQYRC  151 (315)
Q Consensus        92 ~~~~~~-~~~~ViPIfy~v~ps~V~~q~g~f~~~f~~~~~~~~~~~e~v~~W~~aL~~v~~  151 (315)
                      +++... ...+||||+|+..|.++..+.+.++.++.........+..+ +.|+.++..+.+
T Consensus        80 ~~~~~~~~~~~iIPI~~~~~~~~~~~~~~~l~~~~~~~~~~w~~~~~~-~fW~~~~~~l~~  139 (140)
T smart00255       80 LENALEEGGLRVIPIFYEVIPSDVRKQPGKFRKVLKKNYLKWPEDEKE-RFWKKALYAVPS  139 (140)
T ss_pred             HHHHHHcCCCeEEEEEEecChHHHHhcccHHHHHHHHHHhhcCCchhH-HHHHHHHHHhcc
Confidence            987754 66899999999889999999999999998875555443333 789999988753

>PF13676 TIR_2: TIR domain; PDB: 3H16_B 3UB4_A 2Y92_A 3UB3_A 3UB2_A

Probab=99.66  E-value=4.4e-17  Score=128.84  Aligned_cols=91  Identities=32%  Similarity=0.614  Sum_probs=77.5

Q ss_pred             EEEccccccCccchHHHHHHHHhhCCCeEEeeCccCCCCcchHHHHHHHhhcCeEEEEeeccccCChHhHHHHHHHHHHh
Q 039731           16 VFLSFRGEDTRDNFTSHLHAALCRKKIKTFIDEELNRGDEISPAILKAIEGSKITVIIFSKNYASSKWCLDELVKILECH   95 (315)
Q Consensus        16 VFIS~~~~D~r~~fv~~L~~~L~~~gi~~f~D~~~~~G~~i~~~i~~aI~~S~~~Ivv~S~~y~~S~wcl~El~~i~~~~   95 (315)
                      |||||+++|  ..++..|...|++.|+++|+|.++.+|+.+.+.|.++|++|+..|+++|++|..|+||..|+..+.   
T Consensus         1 VFIS~~~~D--~~~a~~l~~~L~~~g~~v~~d~~~~~g~~~~~~i~~~i~~s~~~i~~~S~~~~~s~~~~~E~~~a~---   75 (102)
T PF13676_consen    1 VFISYSSED--REFAERLAERLESAGIRVFLDRDIPPGEDWREEIERAIERSDCVIVLLSPNYLKSPWCRFELGAAW---   75 (102)
T ss_dssp             EEEEEEGGG--CCCHHHHHHHHHHTT--EE-GGEE-TTS-HHCCCHHCCTTEEEEEEEEEHHHHCTHHHHHHHHHHH---
T ss_pred             eEEEecCCc--HHHHHHHHHHHhhcCCEEEEEEeCCCCCCHHHHHHHHHHhCCEEEEEECcccccChHHHHHHHHHH---
Confidence            899999999  469999999999999999999999999999999999999999999999999999999999999983   


Q ss_pred             hhCCCeeeeEEEecCCccc
Q 039731           96 KMNSQMVVPVFYRIDPSDV  114 (315)
Q Consensus        96 ~~~~~~ViPIfy~v~ps~V  114 (315)
                       ..+..||||.  +++.++
T Consensus        76 -~~~~~iipv~--~~~~~~   91 (102)
T PF13676_consen   76 -KRGKPIIPVR--LDPCEL   91 (102)
T ss_dssp             -CTSESEEEEE--CSGGGS
T ss_pred             -HCCCEEEEEE--ECCcCC
Confidence             3455899999  555544

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]

Probab=98.96  E-value=4.4e-10  Score=119.40  Aligned_cols=108  Identities=8%  Similarity=-0.064  Sum_probs=79.0

Q ss_pred             CCCCCCceeeeeCCCCCcccceeeeeeeccccccccCCCccc-----hhcc---cccccccee-eccccCCccCHHHHHH
Q 039731          171 NGTKPNTFTVNVLPPNEEECTQIRKLHYDFHDNVGTSGNSES-----IDRS---GELEVESIC-REQINAPQQQRSSLFS  241 (315)
Q Consensus       171 Vg~~~r~~~v~~Ll~~~~~~~~l~~i~~d~~~~~GmGGiGK~-----vy~~---i~~~Fe~~~-~~~s~~~~~gl~~Lq~  241 (315)
                      ||++..+..+-..|..++  ..++||+       ||||+||+     +||+   +..+|+..+ +.+|+..  ...++|+
T Consensus       161 VG~e~~~~kl~~~L~~d~--~~iv~i~-------GMGGvGKTTL~~qi~N~~~~v~~~Fd~~iWV~VSk~f--~~~~iq~  229 (889)
T KOG4658|consen  161 VGLETMLEKLWNRLMEDD--VGIVGIY-------GMGGVGKTTLARQIFNKFDEVGNHFDGVIWVVVSKEF--TTRKIQQ  229 (889)
T ss_pred             ccHHHHHHHHHHHhccCC--CCEEEEE-------CCCcccHHHHHHHHhcccchhcccCceEEEEEEcccc--cHHhHHH
Confidence            666655544433333222  2667776       99999994     4553   557888888 7778766  8999999


Q ss_pred             HHHHHhcC--CCCCcCChhHHHHHHHHhhCCcEEEEEeeCCCCCCCcccc
Q 039731          242 HIIAKGGG--LYAFLAPSDHASIQIQRRHIRLKVSLLASKVDSASSPELS  289 (315)
Q Consensus       242 ~LL~~il~--~~~~~~~~~~~~~~i~~rL~~kKvLIVLDDVd~~~qle~~  289 (315)
                      +++.++..  ......+.++.+..|.+.|.+||+||||||||+...++..
T Consensus       230 ~Il~~l~~~~~~~~~~~~~~~~~~i~~~L~~krfllvLDDIW~~~dw~~I  279 (889)
T KOG4658|consen  230 TILERLGLLDEEWEDKEEDELASKLLNLLEGKRFLLVLDDIWEEVDWDKI  279 (889)
T ss_pred             HHHHHhccCCcccchhhHHHHHHHHHHHhccCceEEEEecccccccHHhc
Confidence            99998865  2223334478899999999999999999999999886543

>PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals []

Probab=98.85  E-value=3.2e-09  Score=98.28  Aligned_cols=93  Identities=12%  Similarity=0.087  Sum_probs=68.4

Q ss_pred             ccceeeeeeeccccccccCCCccc-----hhcc--cccccccee-eccccCCccCHHHHHHHHHHHhcCC--CC-CcCCh
Q 039731          189 ECTQIRKLHYDFHDNVGTSGNSES-----IDRS--GELEVESIC-REQINAPQQQRSSLFSHIIAKGGGL--YA-FLAPS  257 (315)
Q Consensus       189 ~~~~l~~i~~d~~~~~GmGGiGK~-----vy~~--i~~~Fe~~~-~~~s~~~~~gl~~Lq~~LL~~il~~--~~-~~~~~  257 (315)
                      ....+++|+       ||||+||+     +++.  +..+|++.+ +......  ...+++++|+..+...  .. ...+.
T Consensus        17 ~~~~~v~I~-------G~~G~GKT~LA~~~~~~~~~~~~f~~v~wv~~~~~~--~~~~~~~~i~~~l~~~~~~~~~~~~~   87 (287)
T PF00931_consen   17 NEVRVVAIV-------GMGGIGKTTLARQVARDLRIKNRFDGVIWVSLSKNP--SLEQLLEQILRQLGEPDSSISDPKDI   87 (287)
T ss_dssp             TSSEEEEEE-------ESTTSSHHHHHHHHHCHHHHCCCCTEEEEEEEES-S--CCHHHHHHHHHHHTCC-STSSCCSSH
T ss_pred             CCeEEEEEE-------cCCcCCcceeeeeccccccccccccccccccccccc--cccccccccccccccccccccccccc
Confidence            566778887       99999993     4555  778898877 5544444  5578889999888653  22 45667


Q ss_pred             hHHHHHHHHhhCCcEEEEEeeCCCCCCCccccc
Q 039731          258 DHASIQIQRRHIRLKVSLLASKVDSASSPELST  290 (315)
Q Consensus       258 ~~~~~~i~~rL~~kKvLIVLDDVd~~~qle~~~  290 (315)
                      .+....|++.|+++++||||||||+..+++.+.
T Consensus        88 ~~~~~~l~~~L~~~~~LlVlDdv~~~~~~~~l~  120 (287)
T PF00931_consen   88 EELQDQLRELLKDKRCLLVLDDVWDEEDLEELR  120 (287)
T ss_dssp             HHHHHHHHHHHCCTSEEEEEEEE-SHHHH----
T ss_pred             ccccccchhhhccccceeeeeeecccccccccc
Confidence            789999999999999999999999999876554

This domain has been structurally characterised in the human protein apoptotic protease-activating factor 1 (Apaf-1) []. It contains the three-layered alpha-beta fold and subsequent short alpha-helical region characteristic of the AAA+ ATPase domain superfamily. While this domain is thought to bind and hyrolyse ATP, only ADP binding has been experimentally verified. It is proposed that binding and hydrolysis of ATP by this domain induces conformational changes the the overall protein, leading to formation of the apoptosome.; GO: 0043531 ADP binding; PDB: 3IZA_E 1Z6T_D 3SFZ_A 3SHF_A 1VT4_M 3IZ8_G 3LQR_A 2A5Y_C 3LQQ_A.

>KOG3678 consensus SARM protein (with sterile alpha and armadillo motifs) [Extracellular structures]

Probab=98.74  E-value=2.2e-08  Score=97.40  Aligned_cols=91  Identities=26%  Similarity=0.495  Sum_probs=77.7

Q ss_pred             CCCceeEEEccccccCccchHHHHHHHHhhCCCeEEeeC-ccCCCCcchHHHHHHHhhcCeEEEEeecccc--------C
Q 039731           10 SQSKYDVFLSFRGEDTRDNFTSHLHAALCRKKIKTFIDE-ELNRGDEISPAILKAIEGSKITVIIFSKNYA--------S   80 (315)
Q Consensus        10 ~~~~ydVFIS~~~~D~r~~fv~~L~~~L~~~gi~~f~D~-~~~~G~~i~~~i~~aI~~S~~~Ivv~S~~y~--------~   80 (315)
                      -..+.|||||||...- +..++-|.--|+-+|++||+|- .+..|.. .+.+.+.|..++.+|+|++||..        +
T Consensus       609 ~skq~DVFISYRRstG-nQLASLiKV~LQL~GyrVFIDVdKL~AGKF-dssLlkni~aAkhFiLVLtP~sLDr~lnD~nC  686 (832)
T KOG3678|consen  609 LSKQIDVFISYRRSTG-NQLASLIKVLLQLRGYRVFIDVDKLYAGKF-DSSLLKNIQAAKHFILVLTPNSLDRLLNDDNC  686 (832)
T ss_pred             ccCCcceEEEeecccc-HHHHHHHHHHHHhcCceEEEehhhhhcccc-cHHHHHHHHhhheeEEEeCcchHHHHhccccH
Confidence            3568999999987753 6788888888899999999998 7888864 55899999999999999999965        4


Q ss_pred             ChHhHHHHHHHHHHhhhCCCeeeeEE
Q 039731           81 SKWCLDELVKILECHKMNSQMVVPVF  106 (315)
Q Consensus        81 S~wcl~El~~i~~~~~~~~~~ViPIf  106 (315)
                      -.|...||..+++|.+    -|||||
T Consensus       687 eDWVHKEl~~Afe~~K----NIiPI~  708 (832)
T KOG3678|consen  687 EDWVHKELKCAFEHQK----NIIPIF  708 (832)
T ss_pred             HHHHHHHHHHHHHhcC----Ceeeee
Confidence            5788899999998876    799999

>PF08937 DUF1863: MTH538 TIR-like domain (DUF1863); InterPro: IPR015032 This protein adopts the flavodoxin fold, that is, five parallel beta-strands and four helical segments

Probab=98.34  E-value=8.4e-07  Score=73.47  Aligned_cols=89  Identities=25%  Similarity=0.430  Sum_probs=48.1

Q ss_pred             eeEEEccccccCccchHHHHHHHHhhC-------CCeE-Ee---------eC-ccCCCCcchHHHHHHHhhcCeEEEEee
Q 039731           14 YDVFLSFRGEDTRDNFTSHLHAALCRK-------KIKT-FI---------DE-ELNRGDEISPAILKAIEGSKITVIIFS   75 (315)
Q Consensus        14 ydVFIS~~~~D~r~~fv~~L~~~L~~~-------gi~~-f~---------D~-~~~~G~~i~~~i~~aI~~S~~~Ivv~S   75 (315)
                      |.|||||++.|. ...+..|..-+...       .+.. |.         +. +......|...|.++|..|.++||+++
T Consensus         1 ~~vFIS~~~~d~-~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~I~~~i~~s~~~IVLig   79 (130)
T PF08937_consen    1 YKVFISYSHDDD-DWYYDQLKEWLENSYEIPRDKNFDFRFYDVSKWEPIRSRDDDSSSEYIKRKIRERIKNSSVTIVLIG   79 (130)
T ss_dssp             ----------TH-H-HHHHHHHHHHH-------TTSS--BT---TTT---TTS---TTTTHHHHHHHHHHTEEEEEEE--
T ss_pred             CCccccccccCc-HHHHHHHHHHhccccccccccccccCcccccccCcccCccccchHHHHHHHHHHHHhcCCEEEEEeC
Confidence            579999999985 24777777777662       2221 11         11 222344788899999999999999999


Q ss_pred             ccccCChHhHHHHHHHHHHhhhCCCeeeeEEE
Q 039731           76 KNYASSKWCLDELVKILECHKMNSQMVVPVFY  107 (315)
Q Consensus        76 ~~y~~S~wcl~El~~i~~~~~~~~~~ViPIfy  107 (315)
                      ++...|.|+..|+..+++    .+..||.|.+
T Consensus        80 ~~T~~s~wV~~EI~~A~~----~~~~Ii~V~~  107 (130)
T PF08937_consen   80 PNTAKSKWVNWEIEYALK----KGKPIIGVYL  107 (130)
T ss_dssp             TT----HHHHHHHHHHTT----T---EEEEET
T ss_pred             CCcccCcHHHHHHHHHHH----CCCCEEEEEC
Confidence            999999999999998876    4457777763

The structure is a three-layer sandwich with alpha-1 and alpha-4 on one side of the beta-sheet, and alpha-2 and alpha-3 on the other side. Probable role in signal transduction as a phosphorylation-independent conformational switch protein []. This domain is similar to the TIR domain [].; PDB: 3HYN_A.

>PF08357 SEFIR: SEFIR domain; InterPro: IPR013568 This domain is found in IL17 receptors (IL17Rs, e

Probab=97.56  E-value=0.00038  Score=58.55  Aligned_cols=64  Identities=22%  Similarity=0.371  Sum_probs=51.8

Q ss_pred             eEEEccccccCc-cchHHHHHHHHhhC-CCeEEeeC-ccCC--CCcchHHHHHHHhhcCeEEEEeeccc
Q 039731           15 DVFLSFRGEDTR-DNFTSHLHAALCRK-KIKTFIDE-ELNR--GDEISPAILKAIEGSKITVIIFSKNY   78 (315)
Q Consensus        15 dVFIS~~~~D~r-~~fv~~L~~~L~~~-gi~~f~D~-~~~~--G~~i~~~i~~aI~~S~~~Ivv~S~~y   78 (315)
                      -|||||+..... ...|..|...|++. |+.|.+|. +...  +..+..=+.+.+++++.+|+|.||.|
T Consensus         2 kVfI~Ys~d~~~h~~~V~~la~~L~~~~g~~V~lD~~~~~~i~~~g~~~W~~~~~~~ad~Vliv~S~~~   70 (150)
T PF08357_consen    2 KVFISYSHDSEEHKEWVLALAEFLRQNCGIDVILDQWELNEIARQGPPRWMERQIREADKVLIVCSPGY   70 (150)
T ss_pred             eEEEEeCCCCHHHHHHHHHHHHHHHhccCCceeecHHhhcccccCCHHHHHHHHHhcCCEEEEEeccch
Confidence            499999875432 35689999999999 99999998 6643  66666677888999999999999543

g. Q60943 from SWISSPROT) and SEF proteins (e.g. Q8QHJ9 from SWISSPROT). The latter are feedback inhibitors of FGF signalling and are also thought to be receptors. Due to its similarity to the TIR domain (IPR000157 from INTERPRO), the SEFIR region is thought to be involved in homotypic interactions with other SEFIR/TIR-domain-containing proteins. Thus, SEFs and IL17Rs may be involved in TOLL/IL1R-like signalling pathways [].

>PF10137 TIR-like: Predicted nucleotide-binding protein containing TIR-like domain; InterPro: IPR019302 This entry represents a TIR-like domain found in a family of prokaryotic predicted nucleotide-binding proteins

Probab=95.58  E-value=0.04  Score=45.49  Aligned_cols=60  Identities=17%  Similarity=0.296  Sum_probs=50.0

Q ss_pred             eEEEccccccCccchHHHHHHHHhhCCCeEE-eeCccCCCCcchHHHHHHHhhcCeEEEEeecc
Q 039731           15 DVFLSFRGEDTRDNFTSHLHAALCRKKIKTF-IDEELNRGDEISPAILKAIEGSKITVIIFSKN   77 (315)
Q Consensus        15 dVFIS~~~~D~r~~fv~~L~~~L~~~gi~~f-~D~~~~~G~~i~~~i~~aI~~S~~~Ivv~S~~   77 (315)
                      .|||.|+ +|  ...+..+...|+..|+.+. +++....|..+.+.+.+.+.+++.+|++++|+
T Consensus         1 kVFIvhg-~~--~~~~~~v~~~L~~~~~ep~i~~~~~~~g~tiie~le~~~~~~~faIvl~TpD   61 (125)
T PF10137_consen    1 KVFIVHG-RD--LAAAEAVERFLEKLGLEPIIWHEQPNLGQTIIEKLEEAADSVDFAIVLFTPD   61 (125)
T ss_pred             CEEEEeC-CC--HHHHHHHHHHHHhCCCceEEeecCCCCCCchHHHHHHHhccCCEEEEEEccc
Confidence            3899997 66  3688889889988888754 34455889999999999999999999999996

Their exact function has not, as yet, been defined.

>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase

Probab=95.01  E-value=0.016  Score=53.34  Aligned_cols=83  Identities=8%  Similarity=-0.027  Sum_probs=50.7

Q ss_pred             cccccCCCccc-----hhccccc-ccccee-eccccCCccCHHHHHHHHHHHhcCCCCC------cCChhHHHHHHHHh-
Q 039731          202 DNVGTSGNSES-----IDRSGEL-EVESIC-REQINAPQQQRSSLFSHIIAKGGGLYAF------LAPSDHASIQIQRR-  267 (315)
Q Consensus       202 ~~~GmGGiGK~-----vy~~i~~-~Fe~~~-~~~s~~~~~gl~~Lq~~LL~~il~~~~~------~~~~~~~~~~i~~r-  267 (315)
                      +|+|.+|+||+     +|+.+.. +|+..| ..++++...++.++|+.+.+.+.-....      ..-........+.. 
T Consensus        20 ~I~G~~G~GKTTLlr~I~n~l~~~~fdv~~~v~vI~er~~ev~el~~~I~~~~v~~~~~~~~~~~~~~~~~~~~~a~~~~   99 (249)
T cd01128          20 LIVAPPKAGKTTLLQSIANAITKNHPEVYLIVLLIDERPEEVTDMQRSVKGEVIASTFDEPPERHVQVAEMVLEKAKRLV   99 (249)
T ss_pred             EEECCCCCCHHHHHHHHHhccccccCCeEEEEEEccCCCccHHHHHHHhccEEEEecCCCCHHHHHHHHHHHHHHHHHHH
Confidence            45699999993     4555433 588877 5545553248899999995544321111      11122334444433 


Q ss_pred             hCCcEEEEEeeCCCCCC
Q 039731          268 HIRLKVSLLASKVDSAS  284 (315)
Q Consensus       268 L~~kKvLIVLDDVd~~~  284 (315)
                      -.+++|+|++|++...-
T Consensus       100 ~~G~~vll~iDei~r~a  116 (249)
T cd01128         100 EHGKDVVILLDSITRLA  116 (249)
T ss_pred             HCCCCEEEEEECHHHhh
Confidence            34799999999998653

It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.

>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B

Probab=94.87  E-value=0.026  Score=45.46  Aligned_cols=79  Identities=13%  Similarity=0.028  Sum_probs=46.4

Q ss_pred             ccccCCCccch-hccccccc--------ccee--eccccCCccCHHHHHHHHHHHhcCCCCCcCChhHHHHHHHHhhCCc
Q 039731          203 NVGTSGNSESI-DRSGELEV--------ESIC--REQINAPQQQRSSLFSHIIAKGGGLYAFLAPSDHASIQIQRRHIRL  271 (315)
Q Consensus       203 ~~GmGGiGK~v-y~~i~~~F--------e~~~--~~~s~~~~~gl~~Lq~~LL~~il~~~~~~~~~~~~~~~i~~rL~~k  271 (315)
                      ++|-.|.||+. .+++..++        ...+  .......  ....+.+.|+..+......-.+..+....+.+.+.+.
T Consensus         9 i~G~~G~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~i~~~l~~~~~~~~~~~~l~~~~~~~l~~~   86 (131)
T PF13401_consen    9 ISGPPGSGKTTLIKRLARQLNAEAEIKNHPDVIYVNCPSSR--TPRDFAQEILEALGLPLKSRQTSDELRSLLIDALDRR   86 (131)
T ss_dssp             EEE-TTSSHHHHHHHHHHHHHHHHHHCCCEEEEEEEHHHHS--SHHHHHHHHHHHHT-SSSSTS-HHHHHHHHHHHHHHC
T ss_pred             EEcCCCCCHHHHHHHHHHHhHHhhhccCCCcEEEEEeCCCC--CHHHHHHHHHHHhCccccccCCHHHHHHHHHHHHHhc
Confidence            34999999943 33444333        2222  2222222  5677888888877542222345666667777777664


Q ss_pred             -EEEEEeeCCCCC
Q 039731          272 -KVSLLASKVDSA  283 (315)
Q Consensus       272 -KvLIVLDDVd~~  283 (315)
                       .++||+||++..
T Consensus        87 ~~~~lviDe~~~l   99 (131)
T PF13401_consen   87 RVVLLVIDEADHL   99 (131)
T ss_dssp             TEEEEEEETTHHH
T ss_pred             CCeEEEEeChHhc
Confidence             459999999875

>PRK09376 rho transcription termination factor Rho; Provisional

Probab=94.76  E-value=0.032  Score=54.67  Aligned_cols=85  Identities=9%  Similarity=-0.042  Sum_probs=52.2

Q ss_pred             ccccccCCCccc-----hhccccc-ccccee-eccccCCccCHHHHHHHHHHHhcCCCCCcC------ChhHHHHHHHHh
Q 039731          201 HDNVGTSGNSES-----IDRSGEL-EVESIC-REQINAPQQQRSSLFSHIIAKGGGLYAFLA------PSDHASIQIQRR  267 (315)
Q Consensus       201 ~~~~GmGGiGK~-----vy~~i~~-~Fe~~~-~~~s~~~~~gl~~Lq~~LL~~il~~~~~~~------~~~~~~~~i~~r  267 (315)
                      .+|+|.+|+||+     +|+.+.. +|+.+| +..+++....+.++|++++..+.-....-.      ..+.....-+..
T Consensus       172 ~lIvgppGvGKTTLaK~Ian~I~~nhFDv~~~VvLIgER~~EVtdiqrsIlg~vv~st~d~~~~~~~~~a~~~ie~Ae~~  251 (416)
T PRK09376        172 GLIVAPPKAGKTVLLQNIANSITTNHPEVHLIVLLIDERPEEVTDMQRSVKGEVVASTFDEPAERHVQVAEMVIEKAKRL  251 (416)
T ss_pred             EEEeCCCCCChhHHHHHHHHHHHhhcCCeEEEEEEeCCchhHHHHHHHHhcCcEEEECCCCCHHHHHHHHHHHHHHHHHH
Confidence            346799999994     5666554 699888 555555433678899999754432111111      112233333332


Q ss_pred             -hCCcEEEEEeeCCCCCCC
Q 039731          268 -HIRLKVSLLASKVDSASS  285 (315)
Q Consensus       268 -L~~kKvLIVLDDVd~~~q  285 (315)
                       -.++.|||++|++...-.
T Consensus       252 ~e~G~dVlL~iDsItR~ar  270 (416)
T PRK09376        252 VEHGKDVVILLDSITRLAR  270 (416)
T ss_pred             HHcCCCEEEEEEChHHHHH
Confidence             367999999999986543

>TIGR00767 rho transcription termination factor Rho

Probab=94.59  E-value=0.061  Score=52.86  Aligned_cols=85  Identities=8%  Similarity=-0.033  Sum_probs=52.3

Q ss_pred             ccccccccCCCccch-----hcccccc-cccee-eccccCCccCHHHHHHHHHHHhcCCCCCcCCh------hHHHHHHH
Q 039731          199 DFHDNVGTSGNSESI-----DRSGELE-VESIC-REQINAPQQQRSSLFSHIIAKGGGLYAFLAPS------DHASIQIQ  265 (315)
Q Consensus       199 d~~~~~GmGGiGK~v-----y~~i~~~-Fe~~~-~~~s~~~~~gl~~Lq~~LL~~il~~~~~~~~~------~~~~~~i~  265 (315)
                      +...|+|.+|.||++     ++.+..+ |+..| ...+.+....+.++|++++..+.-........      .......+
T Consensus       169 q~~~IvG~~g~GKTtL~~~i~~~I~~nhfdv~v~VlLIgER~~EVtDLqrsIlg~Vvast~d~p~~~~~~va~~v~e~Ae  248 (415)
T TIGR00767       169 QRGLIVAPPKAGKTVLLQKIAQAITRNHPEVELIVLLIDERPEEVTDMQRSVKGEVVASTFDEPASRHVQVAEMVIEKAK  248 (415)
T ss_pred             CEEEEECCCCCChhHHHHHHHHhhcccCCceEEEEEEcCCCCccHHHHHHHhhceEEEecCCCChHHHHHHHHHHHHHHH
Confidence            356688999999943     4444444 88888 44554422488999999977664321111111      12222333


Q ss_pred             H-hhCCcEEEEEeeCCCCC
Q 039731          266 R-RHIRLKVSLLASKVDSA  283 (315)
Q Consensus       266 ~-rL~~kKvLIVLDDVd~~  283 (315)
                      . +-.+++|+|++|.+...
T Consensus       249 ~~~~~GkdVVLlIDEitR~  267 (415)
T TIGR00767       249 RLVEHKKDVVILLDSITRL  267 (415)
T ss_pred             HHHHcCCCeEEEEEChhHH
Confidence            2 23579999999999855

Members of this family differ in the specificity of RNA binding.

>TIGR02928 orc1/cdc6 family replication initiation protein

Probab=93.31  E-value=0.088  Score=50.42  Aligned_cols=49  Identities=4%  Similarity=-0.034  Sum_probs=31.0

Q ss_pred             CHHHHHHHHHHHhc--CCC--CCcCChhHHHHHHHHhhC--CcEEEEEeeCCCCC
Q 039731          235 QRSSLFSHIIAKGG--GLY--AFLAPSDHASIQIQRRHI--RLKVSLLASKVDSA  283 (315)
Q Consensus       235 gl~~Lq~~LL~~il--~~~--~~~~~~~~~~~~i~~rL~--~kKvLIVLDDVd~~  283 (315)
                      +...+...|+.++.  +..  ..-.+..+....+.+.|.  +++++||||++|..
T Consensus        87 ~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlvIDE~d~L  141 (365)
T TIGR02928        87 TLYQVLVELANQLRGSGEEVPTTGLSTSEVFRRLYKELNERGDSLIIVLDEIDYL  141 (365)
T ss_pred             CHHHHHHHHHHHHhhcCCCCCCCCCCHHHHHHHHHHHHHhcCCeEEEEECchhhh
Confidence            45667788888775  211  111133444455666663  56899999999988

Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.

>PRK00411 cdc6 cell division control protein 6; Reviewed

Probab=93.29  E-value=0.087  Score=51.06  Aligned_cols=79  Identities=13%  Similarity=0.031  Sum_probs=45.3

Q ss_pred             ccCCCccchh-ccccccc-----cceeec-cccCCccCHHHHHHHHHHHhcC-CC-CCcCChhHHHHHHHHhhC--CcEE
Q 039731          205 GTSGNSESID-RSGELEV-----ESICRE-QINAPQQQRSSLFSHIIAKGGG-LY-AFLAPSDHASIQIQRRHI--RLKV  273 (315)
Q Consensus       205 GmGGiGK~vy-~~i~~~F-----e~~~~~-~s~~~~~gl~~Lq~~LL~~il~-~~-~~~~~~~~~~~~i~~rL~--~kKv  273 (315)
                      |..|+||++. +.+..+.     ...+.. ++... .+...+..+|+.++.+ .. ....+..+....+.+.+.  ++.+
T Consensus        62 G~~GtGKT~l~~~v~~~l~~~~~~~~~v~in~~~~-~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  140 (394)
T PRK00411         62 GPPGTGKTTTVKKVFEELEEIAVKVVYVYINCQID-RTRYAIFSEIARQLFGHPPPSSGLSFDELFDKIAEYLDERDRVL  140 (394)
T ss_pred             CCCCCCHHHHHHHHHHHHHHhcCCcEEEEEECCcC-CCHHHHHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHHHhcCCEE
Confidence            9999999432 2222221     111111 11111 2556777888888765 21 122245556667777775  3569


Q ss_pred             EEEeeCCCCCC
Q 039731          274 SLLASKVDSAS  284 (315)
Q Consensus       274 LIVLDDVd~~~  284 (315)
                      +||||++|...
T Consensus       141 viviDE~d~l~  151 (394)
T PRK00411        141 IVALDDINYLF  151 (394)
T ss_pred             EEEECCHhHhh
Confidence            99999999864

>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily

Probab=93.05  E-value=0.3  Score=44.53  Aligned_cols=80  Identities=11%  Similarity=0.119  Sum_probs=39.7

Q ss_pred             ccccCCCccchh-cccccccc--cee-eccccCCccCHHHHHHHHHHHhcCCCCCcCChhHHHHHHH----Hhh-CCcEE
Q 039731          203 NVGTSGNSESID-RSGELEVE--SIC-REQINAPQQQRSSLFSHIIAKGGGLYAFLAPSDHASIQIQ----RRH-IRLKV  273 (315)
Q Consensus       203 ~~GmGGiGK~vy-~~i~~~Fe--~~~-~~~s~~~~~gl~~Lq~~LL~~il~~~~~~~~~~~~~~~i~----~rL-~~kKv  273 (315)
                      ++|..|.||++. +.+...+.  ..+ ....... ....++...|+..+ +.+..-.+.......+.    ..+ .++++
T Consensus        48 l~G~~G~GKTtl~~~l~~~l~~~~~~~~~~~~~~-~~~~~~l~~i~~~l-G~~~~~~~~~~~~~~l~~~l~~~~~~~~~~  125 (269)
T TIGR03015        48 ITGEVGAGKTTLIRNLLKRLDQERVVAAKLVNTR-VDAEDLLRMVAADF-GLETEGRDKAALLRELEDFLIEQFAAGKRA  125 (269)
T ss_pred             EEcCCCCCHHHHHHHHHHhcCCCCeEEeeeeCCC-CCHHHHHHHHHHHc-CCCCCCCCHHHHHHHHHHHHHHHHhCCCCe
Confidence            349999999543 33333322  111 1111111 14456676776554 32111122222222332    322 56789


Q ss_pred             EEEeeCCCCCC
Q 039731          274 SLLASKVDSAS  284 (315)
Q Consensus       274 LIVLDDVd~~~  284 (315)
                      +||+||++...
T Consensus       126 vliiDe~~~l~  136 (269)
T TIGR03015       126 LLVVDEAQNLT  136 (269)
T ss_pred             EEEEECcccCC
Confidence            99999999875

Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.

>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]

Probab=91.58  E-value=0.27  Score=48.09  Aligned_cols=87  Identities=14%  Similarity=0.132  Sum_probs=52.3

Q ss_pred             ccccCCCccchhccc-cccccceeeccccCCccCHHHHHHHHHHHhcCCCCCcCChhHHHHHHHHhhCCcEEEEEeeCCC
Q 039731          203 NVGTSGNSESIDRSG-ELEVESICREQINAPQQQRSSLFSHIIAKGGGLYAFLAPSDHASIQIQRRHIRLKVSLLASKVD  281 (315)
Q Consensus       203 ~~GmGGiGK~vy~~i-~~~Fe~~~~~~s~~~~~gl~~Lq~~LL~~il~~~~~~~~~~~~~~~i~~rL~~kKvLIVLDDVd  281 (315)
                      .||..|+||++..++ ...++......+-. ..|+.+|++-+=.                 .-+.++.++|.+|.+|.|.
T Consensus        53 l~GPPG~GKTTlA~liA~~~~~~f~~~sAv-~~gvkdlr~i~e~-----------------a~~~~~~gr~tiLflDEIH  114 (436)
T COG2256          53 LWGPPGTGKTTLARLIAGTTNAAFEALSAV-TSGVKDLREIIEE-----------------ARKNRLLGRRTILFLDEIH  114 (436)
T ss_pred             EECCCCCCHHHHHHHHHHhhCCceEEeccc-cccHHHHHHHHHH-----------------HHHHHhcCCceEEEEehhh
Confidence            479999999777653 33333322221111 1266666554411                 1244566899999999997


Q ss_pred             CC--CCcccccCCCCCccccCCCCcee--ccCCCCCC
Q 039731          282 SA--SSPELSTSDKIEPKHNVDNGHVT--SSSTNNES  314 (315)
Q Consensus       282 ~~--~qle~~~~~~~~~~~~~~~~~~~--~~~~~~~~  314 (315)
                      ..  .|-+++.+       -|.||.+|  ..+|.|.|
T Consensus       115 RfnK~QQD~lLp-------~vE~G~iilIGATTENPs  144 (436)
T COG2256         115 RFNKAQQDALLP-------HVENGTIILIGATTENPS  144 (436)
T ss_pred             hcChhhhhhhhh-------hhcCCeEEEEeccCCCCC
Confidence            44  45566654       36788876  45666655

>PF13271 DUF4062: Domain of unknown function (DUF4062)

Probab=91.12  E-value=0.77  Score=34.75  Aligned_cols=66  Identities=20%  Similarity=0.171  Sum_probs=48.8

Q ss_pred             eEEEccccccCccchHHHHHHHHhhCCCeEEe-eCccCCCCcchHHHHHHHhhcCeEEEEeeccccCC
Q 039731           15 DVFLSFRGEDTRDNFTSHLHAALCRKKIKTFI-DEELNRGDEISPAILKAIEGSKITVIIFSKNYASS   81 (315)
Q Consensus        15 dVFIS~~~~D~r~~fv~~L~~~L~~~gi~~f~-D~~~~~G~~i~~~i~~aI~~S~~~Ivv~S~~y~~S   81 (315)
                      .||||-.-.|. ..-...|.+.+.+.|..... +.--..+....+.+.+.|++|+++|.++-..|-..
T Consensus         1 rVFiSSt~~Dl-~~eR~~l~~~i~~~~~~~~~~e~~~a~~~~~~~~cl~~v~~cDifI~ilG~rYG~~   67 (83)
T PF13271_consen    1 RVFISSTFRDL-KEERDALIEAIRRLGCEPVGMEFFPASDQSPLEICLKEVDECDIFILILGNRYGSV   67 (83)
T ss_pred             CEEEecChhhH-HHHHHHHHHHHHHCCCeeeeeeeecCCCCCHHHHHHHHHhhCCEEEEeeccccCCC
Confidence            38999888886 45667888888888876432 32112355666688999999999999999998754

>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]

Probab=91.01  E-value=0.35  Score=47.05  Aligned_cols=79  Identities=15%  Similarity=0.078  Sum_probs=50.9

Q ss_pred             ccCCCccch-hccccccccce------eeccccCCccCHHHHHHHHHHHhcCCCCCcCChhHHHHHHHHhhCC--cEEEE
Q 039731          205 GTSGNSESI-DRSGELEVESI------CREQINAPQQQRSSLFSHIIAKGGGLYAFLAPSDHASIQIQRRHIR--LKVSL  275 (315)
Q Consensus       205 GmGGiGK~v-y~~i~~~Fe~~------~~~~s~~~~~gl~~Lq~~LL~~il~~~~~~~~~~~~~~~i~~rL~~--kKvLI  275 (315)
                      |-.|.||++ -..+..+++..      +--++..+ .+..++..+|++++.+.+..-.+..+....+.+.+..  +.++|
T Consensus        49 G~~GTGKT~~~~~v~~~l~~~~~~~~~~yINc~~~-~t~~~i~~~i~~~~~~~p~~g~~~~~~~~~l~~~~~~~~~~~Iv  127 (366)
T COG1474          49 GPTGTGKTATVKFVMEELEESSANVEVVYINCLEL-RTPYQVLSKILNKLGKVPLTGDSSLEILKRLYDNLSKKGKTVIV  127 (366)
T ss_pred             CCCCCCHhHHHHHHHHHHHhhhccCceEEEeeeeC-CCHHHHHHHHHHHcCCCCCCCCchHHHHHHHHHHHHhcCCeEEE
Confidence            999999943 23333333332      21123332 3677888889988865343344556667777777765  78999


Q ss_pred             EeeCCCCCC
Q 039731          276 LASKVDSAS  284 (315)
Q Consensus       276 VLDDVd~~~  284 (315)
                      |||+||...
T Consensus       128 vLDEid~L~  136 (366)
T COG1474         128 ILDEVDALV  136 (366)
T ss_pred             EEcchhhhc
Confidence            999999764

>COG4916 Uncharacterized protein containing a TIR (Toll-Interleukin 1-resistance) domain [Function unknown]

Probab=89.06  E-value=0.47  Score=43.66  Aligned_cols=100  Identities=17%  Similarity=0.169  Sum_probs=67.9

Q ss_pred             CCCceeEEEccccccCccchHHHHHHHHh--hCCCeEEeeC----ccCCCCcchHHHHHHH-hhcCeEEEEeeccccCCh
Q 039731           10 SQSKYDVFLSFRGEDTRDNFTSHLHAALC--RKKIKTFIDE----ELNRGDEISPAILKAI-EGSKITVIIFSKNYASSK   82 (315)
Q Consensus        10 ~~~~ydVFIS~~~~D~r~~fv~~L~~~L~--~~gi~~f~D~----~~~~G~~i~~~i~~aI-~~S~~~Ivv~S~~y~~S~   82 (315)
                      .++.||+=+||.|+-  .+.|.....+++  ...+..|+|.    -+-+|+ +..-+...- +.|+..+|....+|..-.
T Consensus       174 ~~~~~DiG~SFaGEA--R~LVEqV~~E~~~~~~p~~~FYD~~~~~~L~~~s-L~~~L~~~Y~~rC~~~~VF~~~~Y~~K~  250 (329)
T COG4916         174 SEKPVDSGISFAGEA--RNLVEQVQTEHSGLDIPTRRFYDLLVAHPLYPGS-LVSTLDPGYDIRCVVTTVFNTGSYICKS  250 (329)
T ss_pred             cccccceeeEeehhh--hhHHHHHHHhhhcccCCceeeeechhhccccCcc-HHHhcccccCceEEEEEEEeCCceEEee
Confidence            367899999999996  479999999998  4456688886    233442 222333332 256777888899999999


Q ss_pred             HhHHHHHHHHHHhhhCCCeeeeEEE-ecCCccc
Q 039731           83 WCLDELVKILECHKMNSQMVVPVFY-RIDPSDV  114 (315)
Q Consensus        83 wcl~El~~i~~~~~~~~~~ViPIfy-~v~ps~V  114 (315)
                      ||.-|...+-+-.  .-...+||.| .++-+.+
T Consensus       251 ~c~~E~~~~r~~~--~~d~~~rI~~~~~d~~a~  281 (329)
T COG4916         251 TCHIEGLEGRLNP--ILDTGFRIKYLYADNIAI  281 (329)
T ss_pred             eeccchhhccccc--cccccceEEEEecCCccc
Confidence            9999987663321  2246677776 4555544

>PF05729 NACHT: NACHT domain

Probab=85.85  E-value=0.85  Score=37.68  Aligned_cols=17  Identities=18%  Similarity=0.218  Sum_probs=14.9

Q ss_pred             CCcEEEEEeeCCCCCCC
Q 039731          269 IRLKVSLLASKVDSASS  285 (315)
Q Consensus       269 ~~kKvLIVLDDVd~~~q  285 (315)
                      ..+++|||||.+|+...
T Consensus        79 ~~~~~llilDglDE~~~   95 (166)
T PF05729_consen   79 KNKRVLLILDGLDELEE   95 (166)
T ss_pred             cCCceEEEEechHhccc
Confidence            46899999999998876

>PTZ00112 origin recognition complex 1 protein; Provisional

Probab=81.60  E-value=1.4  Score=47.74  Aligned_cols=50  Identities=8%  Similarity=-0.070  Sum_probs=27.8

Q ss_pred             CHHHHHHHHHHHhcC-CCCCcCChhHHHHHHHHhhC---CcEEEEEeeCCCCCC
Q 039731          235 QRSSLFSHIIAKGGG-LYAFLAPSDHASIQIQRRHI---RLKVSLLASKVDSAS  284 (315)
Q Consensus       235 gl~~Lq~~LL~~il~-~~~~~~~~~~~~~~i~~rL~---~kKvLIVLDDVd~~~  284 (315)
                      +...+...|..++.+ ......+..+....+.+.+.   +...+||||+||...
T Consensus       829 tp~sIYqvI~qqL~g~~P~~GlsS~evLerLF~~L~k~~r~v~IIILDEID~L~  882 (1164)
T PTZ00112        829 HPNAAYQVLYKQLFNKKPPNALNSFKILDRLFNQNKKDNRNVSILIIDEIDYLI  882 (1164)
T ss_pred             CHHHHHHHHHHHHcCCCCCccccHHHHHHHHHhhhhcccccceEEEeehHhhhC
Confidence            344556666666655 32222233344444555442   234699999999764

>PF05014 Nuc_deoxyrib_tr: Nucleoside 2-deoxyribosyltransferase; InterPro: IPR007710 Nucleoside 2-deoxyribosyltransferase (2

Probab=81.23  E-value=7.4  Score=30.84  Aligned_cols=67  Identities=16%  Similarity=0.101  Sum_probs=48.3

Q ss_pred             cchHHHHHHHHhhCCCeEEeeC--ccC---CCC----cchHHHHHHHhhcCeEEEEeeccccCChHhHHHHHHHHHH
Q 039731           27 DNFTSHLHAALCRKKIKTFIDE--ELN---RGD----EISPAILKAIEGSKITVIIFSKNYASSKWCLDELVKILEC   94 (315)
Q Consensus        27 ~~fv~~L~~~L~~~gi~~f~D~--~~~---~G~----~i~~~i~~aI~~S~~~Ivv~S~~y~~S~wcl~El~~i~~~   94 (315)
                      ..+...+.+.|++.|+.+|...  +..   ...    .|.+.-.++|++|+++|+++...- .+.=+..|+-.+...
T Consensus        13 ~~~~~~~~~~L~~~g~~v~~P~~~~~~~~~~~~~~~~~i~~~d~~~i~~~D~via~l~~~~-~d~Gt~~ElG~A~al   88 (113)
T PF05014_consen   13 KARVERLREALEKNGFEVYSPQDNDENDEEDSQEWAREIFERDLEGIRECDIVIANLDGFR-PDSGTAFELGYAYAL   88 (113)
T ss_dssp             HHHHHHHHHHHHTTTTEEEGGCTCSSS--TTSHHCHHHHHHHHHHHHHHSSEEEEEECSSS---HHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHhCCCEEEeccccccccccccchHHHHHHHHHHHHHHHCCEEEEECCCCC-CCCcHHHHHHHHHHC
Confidence            5688899999999999988755  221   223    333344578999999999997755 566688899888654

4.2.6 from EC) catalyses the cleavage of the glycosidic bonds of 2-deoxyribonucleosides. Nucleoside 2-deoxyribosyltransferases can be divided into two groups based on their substrate specificity: class I enzymes are specific for the transfer of deoxyribose between two purines, while class II enzymes will transfer the deoxyribose between either purines or pyrimidines. The structure of the class I [] and class II [] enzymes are very similar. In class I enzymes, the purine base shields the active site from solvent, which the smaller pyrimidine base cannot do, while in class II enzymes the active site is shielded by a loop (residues 48-62). Both classes of enzymes are found in various Lactobacillus species and participate in nucleoside recycling in these microorganisms. This entry represents both classes of enzymes.; GO: 0050144 nucleoside deoxyribosyltransferase activity, 0070694 deoxyribonucleoside 5'-monophosphate N-glycosidase activity, 0009159 deoxyribonucleoside monophosphate catabolic process; PDB: 1S2L_A 1S2D_C 1S2I_A 1S3F_B 1S2G_C 2A0K_A 2F67_A 2F64_B 2F62_A 2F2T_A ....

>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A

Probab=80.97  E-value=1.1  Score=38.03  Aligned_cols=19  Identities=26%  Similarity=0.268  Sum_probs=11.9

Q ss_pred             HhhCCcE-EEEEeeCCCCCC
Q 039731          266 RRHIRLK-VSLLASKVDSAS  284 (315)
Q Consensus       266 ~rL~~kK-vLIVLDDVd~~~  284 (315)
                      .....++ ++||+||++..+
T Consensus       144 ~~~~~~~~~vlviDd~d~~~  163 (185)
T PF13191_consen  144 ELAARRKPLVLVIDDLDWAD  163 (185)
T ss_dssp             TS-SE---EEEEEETTTHHH
T ss_pred             HHHhCCCeEEEEEeCCCCCC
Confidence            3334445 999999999554

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	315
3jrn_A	176	Crystal Structure Of Tir Domain From Arabidopsis Th		1e-30
3ozi_A	204	Crystal Structure Of The Tir Domain From The Flax D		5e-29
3h16_A	154	Crystal Structure Of A Bacteria Tir Domain, Pdtir F		2e-04

>pdb|3JRN|A Chain A, Crystal Structure Of Tir Domain From Arabidopsis Thaliana Length = 176

Iteration: 1
 Score =  129 bits (325), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 64/135 (47%), Positives = 88/135 (65%), Gaps = 3/135 (2%)
Query: 10  SQSKYDVFLSFRGEDTRDNFTSHLHAALCRKKIKTFIDE-ELNRGDEISPAILKAIEGSK 68
           + +KYDVFLSFRG DTR NF S L+  L R+ I+TF D+ EL  G   SP +   IE S+
Sbjct: 5   TATKYDVFLSFRGHDTRHNFISFLYKELVRRSIRTFKDDKELENGQRFSPELKSPIEVSR 64
Query: 69  ITVIIFSKNYASSKWCLDELVKILECHKMNSQMVVPVFYRIDPSDVRKQSGRFKDAFVKH 128
             V++ S+NYA+S WCLDELV I++  K  S  V+P+FY ++P+ VR Q+G   + F KH
Sbjct: 65  FAVVVVSENYAASSWCLDELVTIMDFEKKGSITVMPIFYGVEPNHVRWQTGVLAEQFKKH 124
Query: 129 EEQFKDMPEKIQIWR 143
               ++ PEK+  WR
Sbjct: 125 AS--REDPEKVLKWR 137

>pdb|3OZI|A Chain A, Crystal Structure Of The Tir Domain From The Flax Disease Resistance Protein L6 Length = 204

Iteration: 1
 Score =  124 bits (312), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 66/133 (49%), Positives = 91/133 (68%), Gaps = 4/133 (3%)
Query: 13  KYDVFLSFRGEDTRDNFTSHLHAALCRKKIKTF-IDEELNRGDEISPAILKAIEGSKITV 71
           +Y+VFLSFRG DTR+ FT  L+ +L R KI TF  D+EL +G EI P +L+AI+ SKI V
Sbjct: 35  EYEVFLSFRGPDTREQFTDFLYQSLRRYKIHTFRDDDELLKGKEIGPNLLRAIDQSKIYV 94
Query: 72  IIFSKNYASSKWCLDELVKILECHKMN-SQMVVPVFYRIDPSDVRKQSGRFKDAFVKHEE 130
            I S  YA SKWCL EL +I+   + +  ++++P+FY +DPSDVR Q+G +K AF KH  
Sbjct: 95  PIISSGYADSKWCLMELAEIVRRQEEDPRRIILPIFYMVDPSDVRHQTGCYKKAFRKHAN 154
Query: 131 QFKDMPEKIQIWR 143
           +F    + IQ W+
Sbjct: 155 KFD--GQTIQNWK 165

>pdb|3H16|A Chain A, Crystal Structure Of A Bacteria Tir Domain, Pdtir From Paracoccus Denitrificans Length = 154

Iteration: 1
 Score = 43.1 bits (100), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 25/116 (21%), Positives = 50/116 (43%)
Query: 8   LTSQSKYDVFLSFRGEDTRDNFTSHLHAALCRKKIKTFIDEELNRGDEISPAILKAIEGS 67
           LTS   +D+F+S   ED  D   +  H          + D  L  GD +  +I K +  S
Sbjct: 15  LTSAPPHDIFISHAWEDKADFVEALAHTLRAAGAEVWYDDFSLRPGDSLRRSIDKGLGSS 74
Query: 68  KITVIIFSKNYASSKWCLDELVKILECHKMNSQMVVPVFYRIDPSDVRKQSGRFKD 123
           +  +++ S ++   +W   EL  + +        ++P+++++   +V   S    D
Sbjct: 75  RFGIVVLSTHFFKKEWPQKELDGLFQLESSGRSRILPIWHKVSKDEVASFSPTMAD 130

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	315
3jrn_A	176	AT1G72930 protein; TIR domain arabidopsis thaliana	3e-84
3ozi_A	204	L6TR; plant TIR domain, plant protein; 2.30A {Linu	1e-81
3h16_A	154	TIR protein; bacteria TIR domain, signaling protei	1e-74
3ub2_A	146	TOLL/interleukin-1 receptor domain-containing ADA	1e-18
1t3g_A	159	X-linked interleukin-1 receptor accessory protein-	6e-08
2j67_A	178	TOLL like receptor 10; TIR, IL-1, TLR10, membrane,	2e-07
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	4e-06
1fyx_A	149	TOLL-like receptor 2; beta-alpha-beta fold, signal	6e-05
2js7_A	160	Myeloid differentiation primary response protein M	3e-04

>3jrn_A AT1G72930 protein; TIR domain arabidopsis thaliana, plant protein; 2.00A {Arabidopsis thaliana} Length = 176

 Score =  250 bits (641), Expect = 3e-84
 Identities = 66/145 (45%), Positives = 90/145 (62%), Gaps = 8/145 (5%)

Query: 1   MASSSFGLTSQSKYDVFLSFRGEDTRDNFTSHLHAALCRKKIKTFID-EELNRGDEISPA 59
           M+S +      +KYDVFLSFRG DTR NF S L+  L R+ I+TF D +EL  G   SP 
Sbjct: 1   MSSHT-----ATKYDVFLSFRGHDTRHNFISFLYKELVRRSIRTFKDDKELENGQRFSPE 55

Query: 60  ILKAIEGSKITVIIFSKNYASSKWCLDELVKILECHKMNSQMVVPVFYRIDPSDVRKQSG 119
           +   IE S+  V++ S+NYA+S WCLDELV I++  K  S  V+P+FY ++P+ VR Q+G
Sbjct: 56  LKSPIEVSRFAVVVVSENYAASSWCLDELVTIMDFEKKGSITVMPIFYGVEPNHVRWQTG 115

Query: 120 RFKDAFVKHEEQFKDMPEKIQIWRA 144
              + F KH  +    PEK+  WR 
Sbjct: 116 VLAEQFKKHASRED--PEKVLKWRQ 138

>3ozi_A L6TR; plant TIR domain, plant protein; 2.30A {Linum usitatissimum} Length = 204

 Score =  244 bits (626), Expect = 1e-81
 Identities = 67/144 (46%), Positives = 95/144 (65%), Gaps = 4/144 (2%)

Query: 2   ASSSFGLTSQSKYDVFLSFRGEDTRDNFTSHLHAALCRKKIKTFID-EELNRGDEISPAI 60
           +++  G     +Y+VFLSFRG DTR+ FT  L+ +L R KI TF D +EL +G EI P +
Sbjct: 24  STNPSGSFPSVEYEVFLSFRGPDTREQFTDFLYQSLRRYKIHTFRDDDELLKGKEIGPNL 83

Query: 61  LKAIEGSKITVIIFSKNYASSKWCLDELVKILECHKMN-SQMVVPVFYRIDPSDVRKQSG 119
           L+AI+ SKI V I S  YA SKWCL EL +I+   + +  ++++P+FY +DPSDVR Q+G
Sbjct: 84  LRAIDQSKIYVPIISSGYADSKWCLMELAEIVRRQEEDPRRIILPIFYMVDPSDVRHQTG 143

Query: 120 RFKDAFVKHEEQFKDMPEKIQIWR 143
            +K AF KH  +F    + IQ W+
Sbjct: 144 CYKKAFRKHANKFD--GQTIQNWK 165

>3h16_A TIR protein; bacteria TIR domain, signaling protein; 2.50A {Paracoccus denitrificans PD1222} Length = 154

 Score =  225 bits (575), Expect = 1e-74
 Identities = 27/144 (18%), Positives = 61/144 (42%), Gaps = 4/144 (2%)

Query: 2   ASSSFGLTSQSKYDVFLSFRGEDTRDNFTSHLHAALCRKKIKTFIDE-ELNRGDEISPAI 60
            +++  LTS   +D+F+S   ED + +F   L   L     + + D+  L  GD +  +I
Sbjct: 9   PTTNADLTSAPPHDIFISHAWED-KADFVEALAHTLRAAGAEVWYDDFSLRPGDSLRRSI 67

Query: 61  LKAIEGSKITVIIFSKNYASSKWCLDELVKILECHKMNSQMVVPVFYRIDPSDVRKQSGR 120
            K +  S+  +++ S ++   +W   EL  + +        ++P+++++   +V   S  
Sbjct: 68  DKGLGSSRFGIVVLSTHFFKKEWPQKELDGLFQLESSGRSRILPIWHKVSKDEVASFSPT 127

Query: 121 FKDAFVKHEEQFKDMPEKIQIWRA 144
             D    +        ++I     
Sbjct: 128 MADKLAFNTSTKS--VDEIVADLM 149

>3ub2_A TOLL/interleukin-1 receptor domain-containing ADA protein; TIR domain, TLRS adaptor, immune system; 2.40A {Homo sapiens} PDB: 3ub3_A 3ub4_A 2y92_A Length = 146

 Score = 79.7 bits (197), Expect = 1e-18
 Identities = 17/108 (15%), Positives = 39/108 (36%), Gaps = 5/108 (4%)

Query: 13  KYDVFLSFRGEDTRDNFTSHLHAAL--CRKKIKTFIDE-ELNRGDEISPAILKAIEGSKI 69
            YDV +    ED        L + L      ++ F+   +   G  I   + +A+  S  
Sbjct: 10  DYDVCVCHSEEDLV--AAQDLVSYLEGSTASLRCFLQLRDATPGGAIVSELCQALSSSHC 67

Query: 70  TVIIFSKNYASSKWCLDELVKILECHKMNSQMVVPVFYRIDPSDVRKQ 117
            V++ +  +    WC  ++++ L          +P+   +  +    +
Sbjct: 68  RVLLITPGFLQDPWCKYQMLQALTEAPGAEGCTIPLLSGLSRAAYPPE 115

>1t3g_A X-linked interleukin-1 receptor accessory protein-like 1; TIR, IL-1RAPL, IL-1R, TLR, membrane protein; 2.30A {Homo sapiens} Length = 159

 Score = 50.5 bits (120), Expect = 6e-08
 Identities = 21/110 (19%), Positives = 38/110 (34%), Gaps = 14/110 (12%)

Query: 13  KYDVFLSFRGEDTR---------DNFTSHLHAALCRKK--IKTFIDE-ELNRGDEISPAI 60
            YD +LS+   D           + F   +   +  K    K FI + +L         +
Sbjct: 2   DYDAYLSYTKVDPDQWNQETGEEERFALEILPDMLEKHYGYKLFIPDRDLIPTGTYIEDV 61

Query: 61  LKAIEGSKITVIIFSKNYA-SSKWCLDELVKIL-ECHKMNSQMVVPVFYR 108
            + ++ SK  +I+ + NY     W + EL   L          V+ +   
Sbjct: 62  ARCVDQSKRLIIVMTPNYVVRRGWSIFELETRLRNMLVTGEIKVILIECS 111

>2j67_A TOLL like receptor 10; TIR, IL-1, TLR10, membrane, innate immunity, immune response, leucine-rich repeat, glycoprotein, transmembrane; 2.20A {Homo sapiens} PDB: 1fyv_A Length = 178

 Score = 49.5 bits (118), Expect = 2e-07
 Identities = 19/79 (24%), Positives = 33/79 (41%), Gaps = 4/79 (5%)

Query: 13  KYDVFLSFRGEDTRDNFTSHLHAAL--CRKKIKTFIDEE-LNRGDEISPAILKAIEGSKI 69
           ++  F+S+   D      + L   L      I   + E   + G  IS  I+  IE S  
Sbjct: 35  RFHAFISYSEHD-SLWVKNELIPNLEKEDGSILICLYESYFDPGKSISENIVSFIEKSYK 93

Query: 70  TVIIFSKNYASSKWCLDEL 88
           ++ + S N+  ++WC  E 
Sbjct: 94  SIFVLSPNFVQNEWCHYEF 112

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 47.5 bits (112), Expect = 4e-06
 Identities = 48/335 (14%), Positives = 91/335 (27%), Gaps = 102/335 (30%)

Query: 8   LTSQSKYDVFLSFRGEDTRDNFTSHLHAALCRKKIKTFIDEELNRGDEISPAILKAIEGS 67
           L++ +   + L    +      T     +L  K +     +        +P  L  I  S
Sbjct: 281 LSAATTTHISL----DHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAES 336

Query: 68  KITVIIFSKNYASSKWCLDELVKILECHKMNSQMVVPVFYR-IDPSDVRKQSGRFKDAFV 126
               +    N+       D+L  I+E                ++P++ RK    F    V
Sbjct: 337 IRDGLATWDNWKHVN--CDKLTTIIE-----------SSLNVLEPAEYRK---MFDRLSV 380

Query: 127 KHEEQFKD---MPEKI--QIWRAFS-----------VQYRCFEKGPKVHSCGV------- 163
                F     +P  +   IW                +Y   EK PK  +  +       
Sbjct: 381 -----FPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLEL 435

Query: 164 -CPV-------------YAHPNGTKPNTFTVNVL--------------PPNEEECTQIRK 195
              +             Y  P     +      L                + E  T  R 
Sbjct: 436 KVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRM 495

Query: 196 LHYDF--------HDNVGTSGNSESIDRSGELEV--ESICREQINAPQQQRSSLFSHIIA 245
           +  DF        HD+   + +   ++   +L+     IC +     ++  +++   +  
Sbjct: 496 VFLDFRFLEQKIRHDSTAWNASGSILNTLQQLKFYKPYIC-DNDPKYERLVNAILDFLPK 554

Query: 246 KGGGLY----------AFLAPSDH----ASIQIQR 266
               L           A +A  +     A  Q+QR
Sbjct: 555 IEENLICSKYTDLLRIALMAEDEAIFEEAHKQVQR 589

>1fyx_A TOLL-like receptor 2; beta-alpha-beta fold, signaling protein; 2.80A {Homo sapiens} SCOP: c.23.2.1 PDB: 1fyw_A 1o77_A Length = 149

 Score = 41.8 bits (98), Expect = 6e-05
 Identities = 22/83 (26%), Positives = 35/83 (42%), Gaps = 5/83 (6%)

Query: 10 SQSK-YDVFLSFRGEDT---RDNFTSHLHAALCRKKIKTFIDEELNRGDEISPAILKAIE 65
          S++  YD F+S+   D     +     L       K+      +   G  I   I+ +IE
Sbjct: 1  SRNIXYDAFVSYSERDAYWVENLMVQELENFNPPFKLX-LHKRDFIHGKWIIDNIIDSIE 59

Query: 66 GSKITVIIFSKNYASSKWCLDEL 88
           S  TV + S+N+  S+W   EL
Sbjct: 60 KSHKTVFVLSENFVKSEWXKYEL 82

>2js7_A Myeloid differentiation primary response protein MYD88; MYD88_human, TIR domain, TOLL like receptor adaptor domain, innate immune signaling; NMR {Homo sapiens} PDB: 2z5v_A Length = 160

 Score = 39.7 bits (93), Expect = 3e-04
 Identities = 18/109 (16%), Positives = 44/109 (40%), Gaps = 7/109 (6%)

Query: 13  KYDVFLSFRGEDTRDNFTSHLHAAL--CRKKIKTFIDE-ELNRGDEISPAILKAIE-GSK 68
           ++D F+ +   D +  F   +   L     ++K  + + ++  G  +     + IE   +
Sbjct: 16  RFDAFICYCPSDIQ--FVQEMIRQLEQTNYRLKLCVSDRDVLPGTCVWSIASELIEKRCR 73

Query: 69  ITVIIFSKNYASSKWCLDELVKIL-ECHKMNSQMVVPVFYRIDPSDVRK 116
             V++ S +Y  SK C  +    L      + + ++P+ Y+    +   
Sbjct: 74  RMVVVVSDDYLQSKECDFQTKFALSLSPGAHQKRLIPIKYKAMKKEFPS 122

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	315
3ozi_A	204	L6TR; plant TIR domain, plant protein; 2.30A {Linu	100.0
3jrn_A	176	AT1G72930 protein; TIR domain arabidopsis thaliana	100.0
3h16_A	154	TIR protein; bacteria TIR domain, signaling protei	99.98
3ub2_A	146	TOLL/interleukin-1 receptor domain-containing ADA	99.93
1fyx_A	149	TOLL-like receptor 2; beta-alpha-beta fold, signal	99.88
2js7_A	160	Myeloid differentiation primary response protein M	99.88
1t3g_A	159	X-linked interleukin-1 receptor accessory protein-	99.88
2j67_A	178	TOLL like receptor 10; TIR, IL-1, TLR10, membrane,	99.87
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	99.65
2a5y_B	549	CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis	98.89
3sfz_A	1249	APAF-1, apoptotic peptidase activating factor 1; a	98.43
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	98.24
1z6t_A	591	APAF-1, apoptotic protease activating factor 1; ca	97.92
1eiw_A	111	Hypothetical protein MTH538; CHEY-like fold, flavo	97.69
3hyn_A	189	Putative signal transduction protein; DUF1863 fami	96.2
1w5s_A	412	Origin recognition complex subunit 2 ORC2; replica	96.1
2v1u_A	387	Cell division control protein 6 homolog; DNA repli	94.71
2qby_B	384	CDC6 homolog 3, cell division control protein 6 ho	92.88
2qby_A	386	CDC6 homolog 1, cell division control protein 6 ho	91.09
3te6_A	318	Regulatory protein SIR3; heterochromatin, gene sil	87.52
1fnn_A	389	CDC6P, cell division control protein 6; ORC1, AAA	86.34
2qen_A	350	Walker-type ATPase; unknown function; HET: ADP; 2.	83.02
2fna_A	357	Conserved hypothetical protein; structural genomic	82.13

>3ozi_A L6TR; plant TIR domain, plant protein; 2.30A {Linum usitatissimum}

Probab=100.00  E-value=3.1e-50  Score=354.10  Aligned_cols=156  Identities=43%  Similarity=0.692  Sum_probs=140.8

Q ss_pred             CCCCCCCceeEEEccccccCccchHHHHHHHHhhCCCeEEeeC-ccCCCCcchHHHHHHHhhcCeEEEEeeccccCChHh
Q 039731            6 FGLTSQSKYDVFLSFRGEDTRDNFTSHLHAALCRKKIKTFIDE-ELNRGDEISPAILKAIEGSKITVIIFSKNYASSKWC   84 (315)
Q Consensus         6 ~s~~~~~~ydVFIS~~~~D~r~~fv~~L~~~L~~~gi~~f~D~-~~~~G~~i~~~i~~aI~~S~~~Ivv~S~~y~~S~wc   84 (315)
                      |+++|.++|||||||||+|+|++|++||+++|+++||++|+|+ ++.+|+.|.++|.+||++|+++|+|||+||++|+||
T Consensus        28 s~~~~~~~yDVFISfrg~D~r~~Fv~~L~~aL~~~GI~~f~D~~el~~G~~I~~~l~~aIe~Sri~IvV~S~nYa~S~WC  107 (204)
T 3ozi_A           28 SGSFPSVEYEVFLSFRGPDTREQFTDFLYQSLRRYKIHTFRDDDELLKGKEIGPNLLRAIDQSKIYVPIISSGYADSKWC  107 (204)
T ss_dssp             ------CCCCEEEEECHHHHTTTHHHHHHHHHHHTTCCEEEEETTTCCGGGTTTTHHHHHHHCSEEEEEECTTGGGCHHH
T ss_pred             cCCCCCcCCeEEEeccccCCCHHHHHHHHHHHHHCCCcEEEeCCccCCCCchHHHHHHHHHhCcEeeEEEEcccccCcHH
Confidence            4446889999999999999999999999999999999999998 999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhhh-CCCeeeeEEEecCCcccccccCchhHHHHHHHHhhcCChHHHHHHHHHHHHHhcccCCCCccCCCc
Q 039731           85 LDELVKILECHKM-NSQMVVPVFYRIDPSDVRKQSGRFKDAFVKHEEQFKDMPEKIQIWRAFSVQYRCFEKGPKVHSCGV  163 (315)
Q Consensus        85 l~El~~i~~~~~~-~~~~ViPIfy~v~ps~V~~q~g~f~~~f~~~~~~~~~~~e~v~~W~~aL~~v~~i~g~~~~~~~~~  163 (315)
                      ++||++|++|.++ ++++||||||+|+|++||+|+|.||++|++|++++.  .+++++||.||++||+++|++.......
T Consensus       108 l~EL~~I~e~~~~~~~~~ViPIFY~VdPs~Vr~q~g~fg~af~~~~~~~~--~~~v~~Wr~AL~~va~lsG~~~~~~~~e  185 (204)
T 3ozi_A          108 LMELAEIVRRQEEDPRRIILPIFYMVDPSDVRHQTGCYKKAFRKHANKFD--GQTIQNWKDALKKVGDLKGWHIGKNDKQ  185 (204)
T ss_dssp             HHHHHHHHHHHHHCTTSEECCEEESSCHHHHHHTCTTHHHHHHHHTTTSC--HHHHHHHHHHHHHHHTSCBEEECTTSCH
T ss_pred             HHHHHHHHHHHHhcCCeeeEEEEeecCHHHHHhccccHHHHHHHHHHhhC--HHHHHHHHHHHHHHhccCceecCCCCCH
Confidence            9999999999865 679999999999999999999999999999998874  7899999999999999999864433333

>3jrn_A AT1G72930 protein; TIR domain arabidopsis thaliana, plant protein; 2.00A {Arabidopsis thaliana}

Probab=100.00  E-value=4.3e-49  Score=340.98  Aligned_cols=146  Identities=44%  Similarity=0.790  Sum_probs=125.7

Q ss_pred             CCCceeEEEccccccCccchHHHHHHHHhhCCCeEEeeC-ccCCCCcchHHHHHHHhhcCeEEEEeeccccCChHhHHHH
Q 039731           10 SQSKYDVFLSFRGEDTRDNFTSHLHAALCRKKIKTFIDE-ELNRGDEISPAILKAIEGSKITVIIFSKNYASSKWCLDEL   88 (315)
Q Consensus        10 ~~~~ydVFIS~~~~D~r~~fv~~L~~~L~~~gi~~f~D~-~~~~G~~i~~~i~~aI~~S~~~Ivv~S~~y~~S~wcl~El   88 (315)
                      ++++|||||||||+|+|.+|++||+++|+++||++|+|+ ++.+|+.|.++|.+||++|+++|+|||+||++|+||++||
T Consensus         5 ~~~~yDVFiSfrg~D~r~~Fv~~L~~~L~~~gi~~f~D~~~l~~G~~i~~~l~~aIe~Sri~IvV~S~ny~~S~WCl~EL   84 (176)
T 3jrn_A            5 TATKYDVFLSFRGHDTRHNFISFLYKELVRRSIRTFKDDKELENGQRFSPELKSPIEVSRFAVVVVSENYAASSWCLDEL   84 (176)
T ss_dssp             --CCEEEEEEECHHHHTTTHHHHHHHHHHHTTCCEECCCC--------------CCTTEEEEEEEECTTTTTCHHHHHHH
T ss_pred             CCCCCeEEEECcCcccChHHHHHHHHHHHHCCCEEEEEcccccCCCchHHHHHHHHHhCCEEEEEecCCcCCChhHHHHH
Confidence            368999999999999999999999999999999999998 9999999999999999999999999999999999999999


Q ss_pred             HHHHHHhhhCCCeeeeEEEecCCcccccccCchhHHHHHHHHhhcCChHHHHHHHHHHHHHhcccCCCC
Q 039731           89 VKILECHKMNSQMVVPVFYRIDPSDVRKQSGRFKDAFVKHEEQFKDMPEKIQIWRAFSVQYRCFEKGPK  157 (315)
Q Consensus        89 ~~i~~~~~~~~~~ViPIfy~v~ps~V~~q~g~f~~~f~~~~~~~~~~~e~v~~W~~aL~~v~~i~g~~~  157 (315)
                      ++|++|.+.++++||||||+|+|++||+|+|.||++|++|+++  .+.+++++||.||++|||++|+..
T Consensus        85 ~~i~~~~~~~~~~ViPIfy~V~ps~Vr~q~g~fg~af~~~~~~--~~~~~~~~Wr~AL~~va~~~G~~~  151 (176)
T 3jrn_A           85 VTIMDFEKKGSITVMPIFYGVEPNHVRWQTGVLAEQFKKHASR--EDPEKVLKWRQALTNFAQLSGDCS  151 (176)
T ss_dssp             HHHHHHHHTTSCEEEEEECSSCHHHHHHTCTHHHHHHHHHHTT--SCHHHHHHHHHHHHHHTTSCCEEC
T ss_pred             HHHHhhhccCCCEEEEEEecCCHHHhhhccCcHHHHHHHHHhc--cCHHHHHHHHHHHHHHhcccceec
Confidence            9999999889999999999999999999999999999999987  468999999999999999999853

>3h16_A TIR protein; bacteria TIR domain, signaling protein; 2.50A {Paracoccus denitrificans PD1222}

Probab=99.98  E-value=7e-34  Score=241.45  Aligned_cols=135  Identities=19%  Similarity=0.351  Sum_probs=120.6

Q ss_pred             CCCCceeEEEccccccCccchHHHHHHHHhhCCCeEEeeC-ccCCCCcchHHHHHHHhhcCeEEEEeeccccCChHhHHH
Q 039731            9 TSQSKYDVFLSFRGEDTRDNFTSHLHAALCRKKIKTFIDE-ELNRGDEISPAILKAIEGSKITVIIFSKNYASSKWCLDE   87 (315)
Q Consensus         9 ~~~~~ydVFIS~~~~D~r~~fv~~L~~~L~~~gi~~f~D~-~~~~G~~i~~~i~~aI~~S~~~Ivv~S~~y~~S~wcl~E   87 (315)
                      ++.++|||||||+++| +..|+.+|+.+|+++|+++|+|+ ++.+|+.|.++|.++|++|+++|+|+|++|++|.||++|
T Consensus        16 ~~~~~~dvFISy~~~D-~~~~~~~L~~~L~~~gi~v~~D~~~l~~G~~~~~~i~~ai~~s~~~i~v~S~~y~~S~wc~~E   94 (154)
T 3h16_A           16 TSAPPHDIFISHAWED-KADFVEALAHTLRAAGAEVWYDDFSLRPGDSLRRSIDKGLGSSRFGIVVLSTHFFKKEWPQKE   94 (154)
T ss_dssp             --CCSEEEEEEEEGGG-TTTTHHHHHHHHHHHTCCEECGGGEECTTCCHHHHHHHHHTSEEEEEEEEEHHHHTTCCCHHH
T ss_pred             CCCCCceEEEECcccC-hHHHHHHHHHHHHHCCCcEEEcHHhCCCccHHHHHHHHHHHhCcEEEEEeCcchhcChHHHHH
Confidence            4678999999999999 56899999999999999999999 999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhhhCCCeeeeEEEecCCcccccccCchhHHHHHHHHhhcCChHHHHHHHHHHHHH
Q 039731           88 LVKILECHKMNSQMVVPVFYRIDPSDVRKQSGRFKDAFVKHEEQFKDMPEKIQIWRAFSVQY  149 (315)
Q Consensus        88 l~~i~~~~~~~~~~ViPIfy~v~ps~V~~q~g~f~~~f~~~~~~~~~~~e~v~~W~~aL~~v  149 (315)
                      |..|+++...++++||||||+|+|++|++|+|.||++|.....     ...+.++-+.|.++
T Consensus        95 l~~~~~~~~~~~~~iiPV~~~v~p~~v~~~~~~~~~~~~~~~~-----~~~~~~ia~~l~~l  151 (154)
T 3h16_A           95 LDGLFQLESSGRSRILPIWHKVSKDEVASFSPTMADKLAFNTS-----TKSVDEIVADLMAI  151 (154)
T ss_dssp             HHHHTCCCTTSCCCEEEEEESCCTGGGTTTCCCCCSSCCEETT-----TSCHHHHHHHHHHH
T ss_pred             HHHHHHHHhcCCCEEEEEEecCCHHHHhhCCccHHHHHhhhcC-----cccHHHHHHHHHHH
Confidence            9999998877888999999999999999999999999876543     33455666666554

>3ub2_A TOLL/interleukin-1 receptor domain-containing ADA protein; TIR domain, TLRS adaptor, immune system; 2.40A {Homo sapiens} PDB: 3ub3_A 3ub4_A 2y92_A

Probab=99.93  E-value=2.1e-28  Score=206.09  Aligned_cols=134  Identities=15%  Similarity=0.240  Sum_probs=94.2

Q ss_pred             CCCCCceeEEEccccccCccchHHHHHHHHhh--CCCeEEeeC-ccCCCCcchHHHHHHHhhcCeEEEEeeccccCChHh
Q 039731            8 LTSQSKYDVFLSFRGEDTRDNFTSHLHAALCR--KKIKTFIDE-ELNRGDEISPAILKAIEGSKITVIIFSKNYASSKWC   84 (315)
Q Consensus         8 ~~~~~~ydVFIS~~~~D~r~~fv~~L~~~L~~--~gi~~f~D~-~~~~G~~i~~~i~~aI~~S~~~Ivv~S~~y~~S~wc   84 (315)
                      ....+.|||||||+++|+  .|+.+|+++|++  .|+++|+|+ |+.+|+.|.++|.++|++|+++|+|+|+||++|.||
T Consensus         5 ~r~~k~YDvFISy~~~D~--~~v~~L~~~Le~~~~g~~~~l~~rD~~~G~~i~~~i~~aI~~Sr~~I~VlS~~y~~S~wc   82 (146)
T 3ub2_A            5 SRWSKDYDVCVCHSEEDL--VAAQDLVSYLEGSTASLRCFLQLRDATPGGAIVSELCQALSSSHCRVLLITPGFLQDPWC   82 (146)
T ss_dssp             CTTSSSEEEEEECCGGGH--HHHHHHHHHHHC------------------CCCEEECCTTCCEEEEEEEECHHHHHCHHH
T ss_pred             CCCCCcceEEEeCChhhH--HHHHHHHHHHhCcCCCeEEEEECccccccccHHHHHHHHHHhCCEEEEEECcccccCHHH
Confidence            334789999999999996  589999999998  599999998 999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhhhCCCeeeeEEEecCCccc----ccccCchhHHHHHHHHhhcCChHHHHHHHHHH
Q 039731           85 LDELVKILECHKMNSQMVVPVFYRIDPSDV----RKQSGRFKDAFVKHEEQFKDMPEKIQIWRAFS  146 (315)
Q Consensus        85 l~El~~i~~~~~~~~~~ViPIfy~v~ps~V----~~q~g~f~~~f~~~~~~~~~~~e~v~~W~~aL  146 (315)
                      +.|+..|+.+......+||||||+|+++++    +.......   ..+...+....+.|.+|++||
T Consensus        83 ~~El~~al~~~~~~~~~vIpv~~~v~~~~lp~~Lr~~~~id~---~~~d~~f~~l~~~v~~~~~~~  145 (146)
T 3ub2_A           83 KYQMLQALTEAPGAEGCTIPLLSGLSRAAYPPELRFMYYVDG---RGPDGGFRQVKEAVMRYLQTL  145 (146)
T ss_dssp             HHHHHHHHHTSSSSSSEEEEEECSCCGGGSCGGGGGSCCEET---TSGGGGHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHHhhcCCcEEEEEcCCChhhCCHHHhCeeeeec---cChHhhHHHHHHHHHHHHHhc
Confidence            999999999863344478899999986665    44332211   112233333357889998875

>1fyx_A TOLL-like receptor 2; beta-alpha-beta fold, signaling protein; 2.80A {Homo sapiens} SCOP: c.23.2.1 PDB: 1fyw_A 1o77_A

Probab=99.88  E-value=1.9e-24  Score=182.38  Aligned_cols=103  Identities=22%  Similarity=0.357  Sum_probs=91.8

Q ss_pred             CCCceeEEEccccccCccchHHH-HHHHHhhC--CCeEEeeC-ccCCCCcchHHHHHHHhhcCeEEEEeeccccCChHhH
Q 039731           10 SQSKYDVFLSFRGEDTRDNFTSH-LHAALCRK--KIKTFIDE-ELNRGDEISPAILKAIEGSKITVIIFSKNYASSKWCL   85 (315)
Q Consensus        10 ~~~~ydVFIS~~~~D~r~~fv~~-L~~~L~~~--gi~~f~D~-~~~~G~~i~~~i~~aI~~S~~~Ivv~S~~y~~S~wcl   85 (315)
                      .++.|||||||+++|+  .|+.+ |+++|++.  |+++|+|+ |+.+|+.+.++|.++|++|+++|+|+||+|++|.||+
T Consensus         2 ~~~~yDvFiSy~~~D~--~~v~~~L~~~Le~~~~g~~~~~~~rd~~~G~~~~~~i~~~i~~Sr~~I~VlS~~y~~S~wc~   79 (149)
T 1fyx_A            2 RNIXYDAFVSYSERDA--YWVENLMVQELENFNPPFKLXLHKRDFIHGKWIIDNIIDSIEKSHKTVFVLSENFVKSEWXK   79 (149)
T ss_dssp             CSCCEEEEEECCGGGH--HHHHTHHHHHHTTSSSCCCEEEHHHHCCSSSCHHHHHHHHHHHEEEEEEEECHHHHHHHTHH
T ss_pred             CCccceEEEECCcccH--HHHHHHHHHHHhcCCCCeEEeeccccCCCchhHHHHHHHHHHHcCEEEEEeCcchhccchHH
Confidence            3678999999999995  79996 99999986  99999999 9999999999999999999999999999999999999


Q ss_pred             HHHHHHHHH-hhhCCCeeeeEEEe-cCCccc
Q 039731           86 DELVKILEC-HKMNSQMVVPVFYR-IDPSDV  114 (315)
Q Consensus        86 ~El~~i~~~-~~~~~~~ViPIfy~-v~ps~V  114 (315)
                      .|+..|+.+ .++++.+||||||+ +++..+
T Consensus        80 ~El~~a~~~~~~~~~~~vIpv~~~~i~~~~~  110 (149)
T 1fyx_A           80 YELDFSHFRLFDENNDAAILILLEPIEKKAI  110 (149)
T ss_dssp             HHSCCSCCTTCGGGTTCCEEEESSCCCTTTS
T ss_pred             HHHHHHHHHHHhcCCCEEEEEEecCCChhhc
Confidence            999999853 45567899999984 555444

>2js7_A Myeloid differentiation primary response protein MYD88; MYD88_human, TIR domain, TOLL like receptor adaptor domain, innate immune signaling; NMR {Homo sapiens} PDB: 2z5v_A

Probab=99.88  E-value=6.4e-24  Score=181.30  Aligned_cols=100  Identities=18%  Similarity=0.317  Sum_probs=90.2

Q ss_pred             CCCceeEEEccccccCccchHHHHHHHHhhC--CCeEEeeC-ccCCCCcchHHHHHHHh-hcCeEEEEeeccccCChHhH
Q 039731           10 SQSKYDVFLSFRGEDTRDNFTSHLHAALCRK--KIKTFIDE-ELNRGDEISPAILKAIE-GSKITVIIFSKNYASSKWCL   85 (315)
Q Consensus        10 ~~~~ydVFIS~~~~D~r~~fv~~L~~~L~~~--gi~~f~D~-~~~~G~~i~~~i~~aI~-~S~~~Ivv~S~~y~~S~wcl   85 (315)
                      .++.|||||||+++|  ..||.+|+++|+++  |+++|+|+ ++.+|+.+.++|.++|+ .|+++|+|+|++|++|.||+
T Consensus        13 ~~~~yDvFISys~~D--~~fv~~L~~~Le~~~~g~~~~~~~rd~~~G~~i~~~i~~~I~~~Sr~~IvVlS~~y~~S~wc~   90 (160)
T 2js7_A           13 MPERFDAFICYCPSD--IQFVQEMIRQLEQTNYRLKLCVSDRDVLPGTCVWSIASELIEKRCRRMVVVVSDDYLQSKECD   90 (160)
T ss_dssp             CTTCEEEEEECCGGG--HHHHHHHHHHHHTSSSCCCCEESCCSSSSSCSCCCCCGGGHHHHEEEEEEECCHHHHHSHHHH
T ss_pred             CCcceEEEEEccccc--HHHHHHHHHHHhcCCCceEEEEeCCCCCCCCcHHHHHHHHHHHhCCEEEEEECcchhcCHHHH
Confidence            467899999999999  57999999999984  69999998 99999999999999999 79999999999999999999


Q ss_pred             HHHHHHHHHh-hhCCCeeeeEEEecCC
Q 039731           86 DELVKILECH-KMNSQMVVPVFYRIDP  111 (315)
Q Consensus        86 ~El~~i~~~~-~~~~~~ViPIfy~v~p  111 (315)
                      .|+..|+++. ++++++||||||+.-+
T Consensus        91 ~El~~a~~~~~~~~~~~vIpV~~~~~~  117 (160)
T 2js7_A           91 FQTKFALSLSPGAHQKRLIPIKYKAMK  117 (160)
T ss_dssp             HHHHHHHHHCTTHHHHTEEEEESSCCC
T ss_pred             HHHHHHHHHHHccCCCEEEEEEEcccc
Confidence            9999999875 4456799999997543

>1t3g_A X-linked interleukin-1 receptor accessory protein-like 1; TIR, IL-1RAPL, IL-1R, TLR, membrane protein; 2.30A {Homo sapiens}

Probab=99.88  E-value=3.8e-23  Score=176.33  Aligned_cols=100  Identities=21%  Similarity=0.315  Sum_probs=89.2

Q ss_pred             CceeEEEccccccC---------ccchHHHHHH-HHh-hCCCeEEeeC-ccCCCCcchHHHHHHHhhcCeEEEEeecccc
Q 039731           12 SKYDVFLSFRGEDT---------RDNFTSHLHA-ALC-RKKIKTFIDE-ELNRGDEISPAILKAIEGSKITVIIFSKNYA   79 (315)
Q Consensus        12 ~~ydVFIS~~~~D~---------r~~fv~~L~~-~L~-~~gi~~f~D~-~~~~G~~i~~~i~~aI~~S~~~Ivv~S~~y~   79 (315)
                      +.|||||||+++|+         +..||.+|++ .|+ +.|+++|+|+ |+.+|+.+.++|.++|++|+.+|+|+|+||+
T Consensus         1 k~yDaFISy~~~D~~wv~~~~~~~~~fv~~ll~~~LE~~~g~~l~~~~rD~~~G~~i~~~i~~~I~~Sr~~IvVlS~~y~   80 (159)
T 1t3g_A            1 KDYDAYLSYTKVDPDQWNQETGEEERFALEILPDMLEKHYGYKLFIPDRDLIPTGTYIEDVARCVDQSKRLIIVMTPNYV   80 (159)
T ss_dssp             CCBSEEEECCCCC-------CCSHHHHHHTHHHHHHHHTSCCCEECHHHHCCCCTTHHHHHHHHHHTBSEEEEEECHHHH
T ss_pred             CCceEEEeCccccchhhhccchhhHHHHHHHHHHHHcCCCCeEEEEEcccccCccchHHHHHHHHHHcCEEEEEEccchh
Confidence            46999999999996         3579999776 699 7999999998 9999999999999999999999999999997


Q ss_pred             -CChHhHHHHHHHHHHh-hhCCCeeeeEEEecCC
Q 039731           80 -SSKWCLDELVKILECH-KMNSQMVVPVFYRIDP  111 (315)
Q Consensus        80 -~S~wcl~El~~i~~~~-~~~~~~ViPIfy~v~p  111 (315)
                       .|.||+.|+..|+.+. .+++..||||+|.-.+
T Consensus        81 ~~S~wc~~El~~a~~~~~~~~~~~vI~I~~~~~~  114 (159)
T 1t3g_A           81 VRRGWSIFELETRLRNMLVTGEIKVILIECSELR  114 (159)
T ss_dssp             HTTTTHHHHHSHHHHHHHHTTSSEEEEEECSCCC
T ss_pred             hcChHHHHHHHHHHHHHHhcCCCEEEEEEecccc
Confidence             9999999999999876 6677899999976444

>2j67_A TOLL like receptor 10; TIR, IL-1, TLR10, membrane, innate immunity, immune response, leucine-rich repeat, glycoprotein, transmembrane; 2.20A {Homo sapiens} PDB: 1fyv_A

Probab=99.87  E-value=1.2e-23  Score=182.55  Aligned_cols=104  Identities=22%  Similarity=0.368  Sum_probs=87.9

Q ss_pred             CCCCCceeEEEccccccCccchHHH-HHHHHhh--CCCeEEeeC-ccCCCCcchHHHHHHHhhcCeEEEEeeccccCChH
Q 039731            8 LTSQSKYDVFLSFRGEDTRDNFTSH-LHAALCR--KKIKTFIDE-ELNRGDEISPAILKAIEGSKITVIIFSKNYASSKW   83 (315)
Q Consensus         8 ~~~~~~ydVFIS~~~~D~r~~fv~~-L~~~L~~--~gi~~f~D~-~~~~G~~i~~~i~~aI~~S~~~Ivv~S~~y~~S~w   83 (315)
                      ...++.|||||||+++|+  .||.. |+++|++  .|+++|+|+ |+.+|+.|.++|.++|++|+++|+|+||+|++|.|
T Consensus        30 ~~~~~~yDvFISys~~D~--~fv~~~L~~~LE~~~~g~~~~l~~rD~~~G~~i~~~i~~aI~~Sr~~IvVlS~~yl~S~w  107 (178)
T 2j67_A           30 LKRNVRFHAFISYSEHDS--LWVKNELIPNLEKEDGSILICLYESYFDPGKSISENIVSFIEKSYKSIFVLSPNFVQNEW  107 (178)
T ss_dssp             CCCSCCEEEEEECCGGGH--HHHHHTHHHHHTTCC-CCCEEEHHHHCCTTSCHHHHHHHHHHTEEEEEEEECHHHHHHTG
T ss_pred             cCCCccceEEEECCCCCH--HHHHHHHHHHHhcccCCeEEEEecccCCCCccHHHHHHHHHHhCCEEEEEecccccccch
Confidence            346789999999999995  79975 9999998  899999999 99999999999999999999999999999999999


Q ss_pred             hHHHHHHHHHHh-hhCCCeeeeEEEe-cCCcc
Q 039731           84 CLDELVKILECH-KMNSQMVVPVFYR-IDPSD  113 (315)
Q Consensus        84 cl~El~~i~~~~-~~~~~~ViPIfy~-v~ps~  113 (315)
                      |+.|+..|+.+. ++++++||||||+ +.+.+
T Consensus       108 c~~El~~a~~~~~~~~~~~vIpV~~~~i~~~~  139 (178)
T 2j67_A          108 CHYEFYFAHHNLFHENSDHIILILLEPIPFYC  139 (178)
T ss_dssp             GGTHHHHTTCC-------CEEEEESSCCCGGG
T ss_pred             HHHHHHHHHHHHHhcCCCEEEEEEecCCChHH
Confidence            999999998653 5567799999985 44433

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=99.65  E-value=4.6e-17  Score=170.52  Aligned_cols=100  Identities=20%  Similarity=0.324  Sum_probs=89.8

Q ss_pred             CCCceeEEEccccccCccchH-HHHHHHHhh-----CCCeEEeeC-ccCCCCcchHHHHHHHhhcCeEEEEeeccccCCh
Q 039731           10 SQSKYDVFLSFRGEDTRDNFT-SHLHAALCR-----KKIKTFIDE-ELNRGDEISPAILKAIEGSKITVIIFSKNYASSK   82 (315)
Q Consensus        10 ~~~~ydVFIS~~~~D~r~~fv-~~L~~~L~~-----~gi~~f~D~-~~~~G~~i~~~i~~aI~~S~~~Ivv~S~~y~~S~   82 (315)
                      ..+.|||||||+++|.  .|| ..|.+.|++     .|+++|+|+ |+.||+.+.++|.++|++||.+|+|+|++|+.|+
T Consensus       667 ~~~~yd~fisy~~~d~--~~v~~~l~~~Le~~~~~~~~~~~~~~~rd~~~G~~~~~~i~~~i~~sr~~i~vls~~~~~s~  744 (844)
T 3j0a_A          667 DMYKYDAYLCFSSKDF--TWVQNALLKHLDTQYSDQNRFNLCFEERDFVPGENRIANIQDAIWNSRKIVCLVSRHFLRDG  744 (844)
T ss_dssp             SCCCCSEEEECCSTTH--HHHHHTHHHHHHSTTTTTTCSCEECSSSSCCSSSCHHHHHHHHHHHSSEEEEEECTTHHHHT
T ss_pred             cceeccEEEEeeCCcH--HHHHHHHHHHHhhccccCCceEEEEEccccCCCchHHHHHHHHHHHhCeEEEEeccccccCh
Confidence            4679999999999995  577 679999985     589999999 9999999999999999999999999999999999


Q ss_pred             HhHHHHHHHHHHh-hhCCCeeeeEEEecCC
Q 039731           83 WCLDELVKILECH-KMNSQMVVPVFYRIDP  111 (315)
Q Consensus        83 wcl~El~~i~~~~-~~~~~~ViPIfy~v~p  111 (315)
                      ||..|+..|+.+. ++++.+||||||+-.|
T Consensus       745 wc~~e~~~a~~~~~~~~~~~~i~i~~~~~~  774 (844)
T 3j0a_A          745 WCLEAFSYAQGRCLSDLNSALIMVVVGSLS  774 (844)
T ss_dssp             STTHHHHHHHSCCCCSSCTTEEEEESSCCC
T ss_pred             HHHHHHHHHHHHHHHhcCCcEEEEEeccCC
Confidence            9999999998765 5677899999986433

>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*

Probab=98.89  E-value=8e-10  Score=110.60  Aligned_cols=109  Identities=13%  Similarity=-0.010  Sum_probs=75.3

Q ss_pred             CCCCCCceeeeeCCCCC-cccceeeeeeeccccccccCCCcc-----chhc----ccccccccee-eccccCCccCHHHH
Q 039731          171 NGTKPNTFTVNVLPPNE-EECTQIRKLHYDFHDNVGTSGNSE-----SIDR----SGELEVESIC-REQINAPQQQRSSL  239 (315)
Q Consensus       171 Vg~~~r~~~v~~Ll~~~-~~~~~l~~i~~d~~~~~GmGGiGK-----~vy~----~i~~~Fe~~~-~~~s~~~~~gl~~L  239 (315)
                      +|++.....+..++... .....+++|+       |||||||     .+|+    ++..+|++.+ +.+++....++..+
T Consensus       131 ~GR~~~~~~l~~~L~~~~~~~~~vv~I~-------G~gGvGKTtLA~~v~~~~~~~~~~~F~~~~wv~vs~~~~~~~~~~  203 (549)
T 2a5y_B          131 YIREYHVDRVIKKLDEMCDLDSFFLFLH-------GRAGSGKSVIASQALSKSDQLIGINYDSIVWLKDSGTAPKSTFDL  203 (549)
T ss_dssp             CCCHHHHHHHHHHHHHHTTSSSEEEEEE-------CSTTSSHHHHHHHHHHHCSSTBTTTBSEEEEEECCCCSTTHHHHH
T ss_pred             CCchHHHHHHHHHHhcccCCCceEEEEE-------cCCCCCHHHHHHHHHHhhhHHHhccCCcEEEEEECCCCCCCHHHH
Confidence            46655444443333221 3346777776       9999999     4675    6788899877 55544321268899


Q ss_pred             HHHHHHHhcCC-C-CCcC-----ChhHHHHHHHHhhCCc-EEEEEeeCCCCCCCc
Q 039731          240 FSHIIAKGGGL-Y-AFLA-----PSDHASIQIQRRHIRL-KVSLLASKVDSASSP  286 (315)
Q Consensus       240 q~~LL~~il~~-~-~~~~-----~~~~~~~~i~~rL~~k-KvLIVLDDVd~~~ql  286 (315)
                      ++.|+..+... . ....     +.......++++|++| |+||||||||+.+|+
T Consensus       204 ~~~il~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~L~~~kr~LlVLDdv~~~~~~  258 (549)
T 2a5y_B          204 FTDILLMLKSEDDLLNFPSVEHVTSVVLKRMICNALIDRPNTLFVFDDVVQEETI  258 (549)
T ss_dssp             HHHHHHHHTTTSCCTTCCCCTTCCHHHHHHHHHHHHTTSTTEEEEEEEECCHHHH
T ss_pred             HHHHHHHHhcCcccccccccccccHHHHHHHHHHHHcCCCcEEEEEECCCCchhh
Confidence            99999998752 1 1222     2344578999999996 999999999999876

>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*

Probab=98.43  E-value=5e-08  Score=104.54  Aligned_cols=114  Identities=9%  Similarity=-0.116  Sum_probs=72.3

Q ss_pred             ccCCCCCCceeeeeCCCCCcccceeeeeeeccccccccCCCccc-----hhcc---cccccccee--eccccCCccCHHH
Q 039731          169 HPNGTKPNTFTVNVLPPNEEECTQIRKLHYDFHDNVGTSGNSES-----IDRS---GELEVESIC--REQINAPQQQRSS  238 (315)
Q Consensus       169 ~~Vg~~~r~~~v~~Ll~~~~~~~~l~~i~~d~~~~~GmGGiGK~-----vy~~---i~~~Fe~~~--~~~s~~~~~gl~~  238 (315)
                      ..+|++..+..+..++.......++++|+       ||||+||+     +|++   ...+|...+  +..++....++..
T Consensus       125 ~~vgR~~~~~~l~~~l~~~~~~~~~v~i~-------G~gG~GKTtLa~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~  197 (1249)
T 3sfz_A          125 IFVTRKKLVHAIQQKLWKLNGEPGWVTIY-------GMAGCGKSVLAAEAVRDHSLLEGCFSGGVHWVSIGKQDKSGLLM  197 (1249)
T ss_dssp             SCCCCHHHHHHHHHHHHTTTTSCEEEEEE-------CSTTSSHHHHHHHHTCCHHHHTTTSTTCEEEEECCSCCHHHHHH
T ss_pred             eeccHHHHHHHHHHHHhhccCCCCEEEEE-------eCCCCCHHHHHHHHhcChhHHHhhCCCeEEEEEECCcCchHHHH
Confidence            45677665555555443334567778787       99999994     3444   344466555  3333322123444


Q ss_pred             HHHHHHHHhcCCC----CCcCChhHHHHHHHHhhCCc--EEEEEeeCCCCCCCcccc
Q 039731          239 LFSHIIAKGGGLY----AFLAPSDHASIQIQRRHIRL--KVSLLASKVDSASSPELS  289 (315)
Q Consensus       239 Lq~~LL~~il~~~----~~~~~~~~~~~~i~~rL~~k--KvLIVLDDVd~~~qle~~  289 (315)
                      ..+.++..+....    ....+.++....++..|.+|  |+||||||||+.+|++.+
T Consensus       198 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~LlvlDd~~~~~~~~~~  254 (1249)
T 3sfz_A          198 KLQNLCMRLDQEESFSQRLPLNIEEAKDRLRVLMLRKHPRSLLILDDVWDPWVLKAF  254 (1249)
T ss_dssp             HHHHHHHHHTTTCTTCSSCCSSHHHHHHHHHHHTSSSSCSCEEEEESCCCHHHHTTT
T ss_pred             HHHHHHHHhhhhcccccCCCCCHHHHHHHHHHHHhccCCCEEEEEecCCCHHHHHhh
Confidence            4555666665421    12345666777888888877  999999999999998875

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A*

Probab=98.24  E-value=3.8e-07  Score=97.10  Aligned_cols=109  Identities=6%  Similarity=-0.074  Sum_probs=65.2

Q ss_pred             CCCCCCceeeeeCCCCCcccceeeeeeeccccccccCCCccc-----hhc--ccccccccee--eccccCCccCHHHHHH
Q 039731          171 NGTKPNTFTVNVLPPNEEECTQIRKLHYDFHDNVGTSGNSES-----IDR--SGELEVESIC--REQINAPQQQRSSLFS  241 (315)
Q Consensus       171 Vg~~~r~~~v~~Ll~~~~~~~~l~~i~~d~~~~~GmGGiGK~-----vy~--~i~~~Fe~~~--~~~s~~~~~gl~~Lq~  241 (315)
                      +|++.....+...+.. .+...+++|+       ||||+||+     +|+  ++..+|+..+  ..+++..  ....++.
T Consensus       131 VGRe~eLeeL~elL~~-~d~~RVV~Iv-------GmGGIGKTTLAk~Vy~d~rV~~~Fd~gV~WVsVs~~~--d~~~IL~  200 (1221)
T 1vt4_I          131 VSRLQPYLKLRQALLE-LRPAKNVLID-------GVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCN--SPETVLE  200 (1221)
T ss_dssp             CCCHHHHHHHHHHHHH-CCSSCEEEEC-------CSTTSSHHHHHHHHHHHCHHHHHHSSCEEEEECCCSS--SHHHHHH
T ss_pred             CCcHHHHHHHHHHHhc-cCCCeEEEEE-------cCCCccHHHHHHHHHHhhHHHHhCCCcEEEEEeCCCC--CHHHHHH
Confidence            5655444333332221 1235667776       99999994     454  4677899755  4444443  5555655


Q ss_pred             HHHHH---hcC---CCCC-----cCChhHHHHHHHHhh---CCcEEEEEeeCCCCCCCcccc
Q 039731          242 HIIAK---GGG---LYAF-----LAPSDHASIQIQRRH---IRLKVSLLASKVDSASSPELS  289 (315)
Q Consensus       242 ~LL~~---il~---~~~~-----~~~~~~~~~~i~~rL---~~kKvLIVLDDVd~~~qle~~  289 (315)
                      .|+..   +..   ....     ..+.++....+++.|   .+||+||||||||+.+|++.+
T Consensus       201 ~Ll~lL~~i~~~~~~~~d~~~~ip~~leeL~e~Lr~lL~~l~~KRvLLVLDDVwd~eqLe~f  262 (1221)
T 1vt4_I          201 MLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAF  262 (1221)
T ss_dssp             HHHHHHHHHCSSSTTTSCCCSSHHHHHHHHHHHHHHHHHHSTTSSCEEEEESCCCHHHHHHH
T ss_pred             HHHHHHhhcCcccccccccccCCCCCHHHHHHHHHHHHHhhcCCCEEEEEeCcChHHHHHhh
Confidence            55543   221   0110     112344566677765   679999999999999998764

>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}

Probab=97.92  E-value=1.4e-06  Score=87.10  Aligned_cols=113  Identities=11%  Similarity=-0.029  Sum_probs=65.0

Q ss_pred             ccCCCCCCceeeeeCCCCCcccceeeeeeeccccccccCCCccch-----hccc---cccccc-ee-eccccCCccC-HH
Q 039731          169 HPNGTKPNTFTVNVLPPNEEECTQIRKLHYDFHDNVGTSGNSESI-----DRSG---ELEVES-IC-REQINAPQQQ-RS  237 (315)
Q Consensus       169 ~~Vg~~~r~~~v~~Ll~~~~~~~~l~~i~~d~~~~~GmGGiGK~v-----y~~i---~~~Fe~-~~-~~~s~~~~~g-l~  237 (315)
                      ..||++..+..+...+........++.|+       ||||+||++     |+..   ..+|.. .+ .......... +.
T Consensus       125 ~~vGR~~~l~~L~~~L~~~~~~~~~v~I~-------G~~GiGKTtLa~~~~~~~~~~~~~f~~~v~wv~~~~~~~~~~~~  197 (591)
T 1z6t_A          125 VFVTRKKLVNAIQQKLSKLKGEPGWVTIH-------GMAGCGKSVLAAEAVRDHSLLEGCFPGGVHWVSVGKQDKSGLLM  197 (591)
T ss_dssp             SCCCCHHHHHHHHHHHTTSTTSCEEEEEE-------CCTTSSHHHHHHHHHCCHHHHHHHCTTCEEEEEEESCCHHHHHH
T ss_pred             eecccHHHHHHHHHHHhcccCCCceEEEE-------cCCCCCHHHHHHHHHhchhHHHhhCCCceEEEECCCCchHHHHH
Confidence            35666655444444433333446677777       999999943     4432   566853 33 3332221011 22


Q ss_pred             HHHHHHHHHhcC-C---CCCcCChhHHHHHHHHhhCC--cEEEEEeeCCCCCCCcccc
Q 039731          238 SLFSHIIAKGGG-L---YAFLAPSDHASIQIQRRHIR--LKVSLLASKVDSASSPELS  289 (315)
Q Consensus       238 ~Lq~~LL~~il~-~---~~~~~~~~~~~~~i~~rL~~--kKvLIVLDDVd~~~qle~~  289 (315)
                      .++ .++..+.. .   .....+.......+++.|.+  +++||||||||+.++|+.+
T Consensus       198 ~l~-~l~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~LLVLDdv~~~~~l~~l  254 (591)
T 1z6t_A          198 KLQ-NLCTRLDQDESFSQRLPLNIEEAKDRLRILMLRKHPRSLLILDDVWDSWVLKAF  254 (591)
T ss_dssp             HHH-HHHHHHCSSCCSCSSCCCSHHHHHHHHHHHHHHTCTTCEEEEEEECCHHHHHTT
T ss_pred             HHH-HHHHHhccccccccCCCCCHHHHHHHHHHHHccCCCCeEEEEeCCCCHHHHHHh
Confidence            222 23333321 1   22344566677788888876  7899999999999888765

>1eiw_A Hypothetical protein MTH538; CHEY-like fold, flavodoxin-like fold, (A/B)5 doubly wound fold, parallel beta sheet; NMR {Methanothermobacterthermautotrophicus} SCOP: c.23.3.1

Probab=97.69  E-value=4.2e-05  Score=60.68  Aligned_cols=72  Identities=7%  Similarity=0.011  Sum_probs=51.8

Q ss_pred             CceeEEEccccccCccchHHHHHHHHhhCCCeEEeeCccCCCCcchHHHHHHHhhcCeEEEEeeccccCChHhHHHHHHH
Q 039731           12 SKYDVFLSFRGEDTRDNFTSHLHAALCRKKIKTFIDEELNRGDEISPAILKAIEGSKITVIIFSKNYASSKWCLDELVKI   91 (315)
Q Consensus        12 ~~ydVFIS~~~~D~r~~fv~~L~~~L~~~gi~~f~D~~~~~G~~i~~~i~~aI~~S~~~Ivv~S~~y~~S~wcl~El~~i   91 (315)
                      .+|.+||||+.+|.    ...|...|.+.|+.. .|              +.|+.|.++|++.++....|+||..|+..+
T Consensus         3 ~~~~lFISh~~~d~----~~~L~~~l~~~~f~~-~~--------------~~I~~~~~vIvL~G~~t~~s~wv~~EI~~A   63 (111)
T 1eiw_A            3 AEIRLYITEGEVED----YRVFLERLEQSGLEW-RP--------------ATPEDADAVIVLAGLWGTRRDEILGAVDLA   63 (111)
T ss_dssp             CCEEEEECCCCSHH----HHHHHHHHHHHCSCE-EE--------------CCSSSCSEEEEEGGGTTTSHHHHHHHHHHH
T ss_pred             ceEEEEEecccHhH----HHHHHHHHhCCCCee-ec--------------CccccCCEEEEEeCCCcCCChHHHHHHHHH
Confidence            36999999999883    233333333445432 22              578999999999999999999999999877


Q ss_pred             HHHhhhCCCeeeeEE
Q 039731           92 LECHKMNSQMVVPVF  106 (315)
Q Consensus        92 ~~~~~~~~~~ViPIf  106 (315)
                      .    +.+.+|+-|.
T Consensus        64 ~----~~gkpIigV~   74 (111)
T 1eiw_A           64 R----KSSKPIITVR   74 (111)
T ss_dssp             T----TTTCCEEEEC
T ss_pred             H----HcCCCEEEEE
Confidence            4    3455666554

>3hyn_A Putative signal transduction protein; DUF1863 family protein, nucleotide-binding protein, structur genomics; HET: MSE; 1.20A {Eubacterium rectale atcc 33656}

Probab=96.20  E-value=0.015  Score=49.74  Aligned_cols=105  Identities=17%  Similarity=0.226  Sum_probs=71.0

Q ss_pred             ceeEEEcc--------------ccccCccchHHHHHHHHhhCCCeEEeeC-ccC-------C-CCcchHHHHHHHhhcCe
Q 039731           13 KYDVFLSF--------------RGEDTRDNFTSHLHAALCRKKIKTFIDE-ELN-------R-GDEISPAILKAIEGSKI   69 (315)
Q Consensus        13 ~ydVFIS~--------------~~~D~r~~fv~~L~~~L~~~gi~~f~D~-~~~-------~-G~~i~~~i~~aI~~S~~   69 (315)
                      +--+||+|              ..+|  ..+...|..--....+-.|.|. +..       . -..|.+.|.+.|..|..
T Consensus         5 rn~~YvaF~~~~~~~~~~~~~~a~~D--i~yy~lL~aWk~n~n~F~F~D~Hd~~y~vrDsS~~e~tIKrrLReRI~~Sk~   82 (189)
T 3hyn_A            5 QNANYSAFYVSEPFSESNLGANSTHD--FVYYNMLRMWKGEDNSFPFNDAHDKTYNVRDGSDWEKTLKPRLHTRLDNSKN   82 (189)
T ss_dssp             CCEEEEECCCCSSCCTTSTTGGGSTT--HHHHHHHHHHHHHCTTSSCCBTTTTCCCTTSCCCTTTTHHHHHHHHHHTEEE
T ss_pred             ccCcEEEEeccCcccccccCCCccch--HHHHHHHHHHHcCCCceeecchhhccccccccccHHHHHHHHHHHHHHhcCc
Confidence            34578888              3455  3456666555555566556675 442       2 34577899999999999


Q ss_pred             EEEEeeccccCChHhHHHHHHHHHHhhhCCCeeeeEEEec-CCcccccccCchh
Q 039731           70 TVIIFSKNYASSKWCLDELVKILECHKMNSQMVVPVFYRI-DPSDVRKQSGRFK  122 (315)
Q Consensus        70 ~Ivv~S~~y~~S~wcl~El~~i~~~~~~~~~~ViPIfy~v-~ps~V~~q~g~f~  122 (315)
                      +|+++|++...|.|-..|+..++.   +.+.+||-|.-+- ..+++....|.|.
T Consensus        83 vIllIs~~T~~s~~v~wEIe~Ai~---~~~~PII~Vy~~~~~~~~i~~~~g~~~  133 (189)
T 3hyn_A           83 IILFLSSITANSRALREEMNYGIG---TKGLPVIVIYPDYDKKSDIVDSNGNFK  133 (189)
T ss_dssp             EEEECCTTCCCCHHHHHHHHHHTT---TTCCCEEEEETTCCSGGGTBCTTSCBC
T ss_pred             EEEEEecCccccchhHHHHHHHHH---hcCCcEEEEECCccccchhhhccccch
Confidence            999999999999999999988862   3455777676332 2335554445443

>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*

Probab=96.10  E-value=0.0081  Score=56.34  Aligned_cols=78  Identities=14%  Similarity=0.083  Sum_probs=45.3

Q ss_pred             ccCCCccch-----hcccccc-----cccee--eccccCCccCHHHHHHHHHHHhcCC-CCCcCChhHHHHHHHHhhC--
Q 039731          205 GTSGNSESI-----DRSGELE-----VESIC--REQINAPQQQRSSLFSHIIAKGGGL-YAFLAPSDHASIQIQRRHI--  269 (315)
Q Consensus       205 GmGGiGK~v-----y~~i~~~-----Fe~~~--~~~s~~~~~gl~~Lq~~LL~~il~~-~~~~~~~~~~~~~i~~rL~--  269 (315)
                      |++|+||+.     ++.+...     |...+  .......  ....+.++|+..+... ...-.+..+....+.+.|.  
T Consensus        59 G~~G~GKT~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~  136 (412)
T 1w5s_A           59 GRVGIGKTTLAKFTVKRVSEAAAKEGLTVKQAYVNAFNAP--NLYTILSLIVRQTGYPIQVRGAPALDILKALVDNLYVE  136 (412)
T ss_dssp             TCCSSSHHHHHHHHHHHHHHHHHHTTCCEEEEEEEGGGCC--SHHHHHHHHHHHHTCCCCCTTCCHHHHHHHHHHHHHHH
T ss_pred             CcCCCCHHHHHHHHHHHHHHHHhccCCceeEEEEECCCCC--CHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHHhc
Confidence            999999943     2333221     12222  2211222  6677888888877432 1112234455566666665  


Q ss_pred             CcEEEEEeeCCCCCC
Q 039731          270 RLKVSLLASKVDSAS  284 (315)
Q Consensus       270 ~kKvLIVLDDVd~~~  284 (315)
                      +++++|||||++...
T Consensus       137 ~~~~llvlDe~~~l~  151 (412)
T 1w5s_A          137 NHYLLVILDEFQSML  151 (412)
T ss_dssp             TCEEEEEEESTHHHH
T ss_pred             CCeEEEEEeCHHHHh
Confidence            679999999998854

>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}

Probab=94.71  E-value=0.05  Score=50.15  Aligned_cols=80  Identities=10%  Similarity=-0.056  Sum_probs=44.7

Q ss_pred             cccCCCccchhc-cccccc---------cceeec-cccCCccCHHHHHHHHHHHhcCC-CCCcCChhHHHHHHHHhh--C
Q 039731          204 VGTSGNSESIDR-SGELEV---------ESICRE-QINAPQQQRSSLFSHIIAKGGGL-YAFLAPSDHASIQIQRRH--I  269 (315)
Q Consensus       204 ~GmGGiGK~vy~-~i~~~F---------e~~~~~-~s~~~~~gl~~Lq~~LL~~il~~-~~~~~~~~~~~~~i~~rL--~  269 (315)
                      +|..|+||++.. .+....         ...+.. ++... .....+...++..+... ...-.+..+....+.+.+  .
T Consensus        50 ~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~-~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~  128 (387)
T 2v1u_A           50 YGLTGTGKTAVARLVLRRLEARASSLGVLVKPIYVNARHR-ETPYRVASAIAEAVGVRVPFTGLSVGEVYERLVKRLSRL  128 (387)
T ss_dssp             CBCTTSSHHHHHHHHHHHHHHHHHHHTCCEEEEEEETTTS-CSHHHHHHHHHHHHSCCCCSSCCCHHHHHHHHHHHHTTS
T ss_pred             ECCCCCCHHHHHHHHHHHHHHHHhccCCCeEEEEEECCcC-CCHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHhcc
Confidence            399999995433 222222         222211 11111 25566777788777431 122223444456666666  3


Q ss_pred             CcEEEEEeeCCCCCC
Q 039731          270 RLKVSLLASKVDSAS  284 (315)
Q Consensus       270 ~kKvLIVLDDVd~~~  284 (315)
                      +++++|||||++...
T Consensus       129 ~~~~vlilDEi~~l~  143 (387)
T 2v1u_A          129 RGIYIIVLDEIDFLP  143 (387)
T ss_dssp             CSEEEEEEETTTHHH
T ss_pred             CCeEEEEEccHhhhc
Confidence            468999999999764

>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}

Probab=92.88  E-value=0.086  Score=48.79  Aligned_cols=50  Identities=12%  Similarity=0.105  Sum_probs=32.7

Q ss_pred             CHHHHHHHHHHHhcCCC--CCcCChhHHHHHHHHhhCCcEEEEEeeCCCCCC
Q 039731          235 QRSSLFSHIIAKGGGLY--AFLAPSDHASIQIQRRHIRLKVSLLASKVDSAS  284 (315)
Q Consensus       235 gl~~Lq~~LL~~il~~~--~~~~~~~~~~~~i~~rL~~kKvLIVLDDVd~~~  284 (315)
                      ....+..+++..+.+..  ..-.+..+....+.+.+..++.+|||||++...
T Consensus        95 ~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~vlilDEi~~l~  146 (384)
T 2qby_B           95 TPQAVLSSLAGKLTGFSVPKHGINLGEYIDKIKNGTRNIRAIIYLDEVDTLV  146 (384)
T ss_dssp             CHHHHHHHHHHHHHCSCCCSSSSCTHHHHHHHHHHHSSSCEEEEEETTHHHH
T ss_pred             CHHHHHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHhccCCCEEEEECHHHhc
Confidence            44566777787775521  112223455667778888776699999998753

>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}

Probab=91.09  E-value=0.079  Score=48.68  Aligned_cols=78  Identities=5%  Similarity=-0.066  Sum_probs=39.1

Q ss_pred             cccCCCccchhc-cccccc------ccee--eccccCCccCHHHHHHHHHHHhcCC-CCCcCChhHHHHHHHHhhC--Cc
Q 039731          204 VGTSGNSESIDR-SGELEV------ESIC--REQINAPQQQRSSLFSHIIAKGGGL-YAFLAPSDHASIQIQRRHI--RL  271 (315)
Q Consensus       204 ~GmGGiGK~vy~-~i~~~F------e~~~--~~~s~~~~~gl~~Lq~~LL~~il~~-~~~~~~~~~~~~~i~~rL~--~k  271 (315)
                      +|..|+||++.- .+....      ...+  .......  ....+...++..+... ...-.+..+....+.+.+.  ++
T Consensus        51 ~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~i~~~~~~--~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~  128 (386)
T 2qby_A           51 YGLTGTGKTAVVKFVLSKLHKKFLGKFKHVYINTRQID--TPYRVLADLLESLDVKVPFTGLSIAELYRRLVKAVRDYGS  128 (386)
T ss_dssp             EECTTSSHHHHHHHHHHHHHHHTCSSCEEEEEEHHHHC--SHHHHHHHHTTTTSCCCCSSSCCHHHHHHHHHHHHHTCCS
T ss_pred             ECCCCCCHHHHHHHHHHHHHHHhcCCceEEEEECCCCC--CHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHhccCC
Confidence            399999995432 232222      2222  1111111  3445555665544221 1111224444455555554  35


Q ss_pred             EEEEEeeCCCCC
Q 039731          272 KVSLLASKVDSA  283 (315)
Q Consensus       272 KvLIVLDDVd~~  283 (315)
                      +++|||||++..
T Consensus       129 ~~vlilDE~~~l  140 (386)
T 2qby_A          129 QVVIVLDEIDAF  140 (386)
T ss_dssp             CEEEEEETHHHH
T ss_pred             eEEEEEcChhhh
Confidence            899999999874

>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}

Probab=87.52  E-value=0.76  Score=42.48  Aligned_cols=53  Identities=13%  Similarity=-0.082  Sum_probs=29.5

Q ss_pred             CHHHHHHHHHHHhcCCCCCcCChhHHHHHHHHhh---CCcEEEEEeeCCCCCCCcc
Q 039731          235 QRSSLFSHIIAKGGGLYAFLAPSDHASIQIQRRH---IRLKVSLLASKVDSASSPE  287 (315)
Q Consensus       235 gl~~Lq~~LL~~il~~~~~~~~~~~~~~~i~~rL---~~kKvLIVLDDVd~~~qle  287 (315)
                      ....+...|+.++.+.........+....+.+.+   .+++++|+||.+|...+-+
T Consensus        93 t~~~~~~~I~~~L~g~~~~~~~~~~~L~~~f~~~~~~~~~~~ii~lDE~d~l~~q~  148 (318)
T 3te6_A           93 GMDALYEKIWFAISKENLCGDISLEALNFYITNVPKAKKRKTLILIQNPENLLSEK  148 (318)
T ss_dssp             --HHHHHHHHHHHSCCC--CCCCHHHHHHHHHHSCGGGSCEEEEEEECCSSSCCTH
T ss_pred             CHHHHHHHHHHHhcCCCCCchHHHHHHHHHHHHhhhccCCceEEEEecHHHhhcch
Confidence            4456777888888764322222222222223333   4578999999999876433

>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20

Probab=86.34  E-value=1  Score=41.32  Aligned_cols=78  Identities=8%  Similarity=-0.127  Sum_probs=41.3

Q ss_pred             ccCCCccchhc-ccccccc----ceeec-cccCCccCHHHHHHHHHHHhcCC-CCCcCChhHHHHHHHHhhC--CcEEEE
Q 039731          205 GTSGNSESIDR-SGELEVE----SICRE-QINAPQQQRSSLFSHIIAKGGGL-YAFLAPSDHASIQIQRRHI--RLKVSL  275 (315)
Q Consensus       205 GmGGiGK~vy~-~i~~~Fe----~~~~~-~s~~~~~gl~~Lq~~LL~~il~~-~~~~~~~~~~~~~i~~rL~--~kKvLI  275 (315)
                      |..|+||++.- .+.....    ..+.. ++... .....+...++..+... ...-.+..+....+.+.+.  +++.+|
T Consensus        51 G~~G~GKTtl~~~l~~~~~~~~~~~~~~i~~~~~-~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vl  129 (389)
T 1fnn_A           51 GRPGTGKTVTLRKLWELYKDKTTARFVYINGFIY-RNFTAIIGEIARSLNIPFPRRGLSRDEFLALLVEHLRERDLYMFL  129 (389)
T ss_dssp             CCTTSSHHHHHHHHHHHHTTSCCCEEEEEETTTC-CSHHHHHHHHHHHTTCCCCSSCCCHHHHHHHHHHHHHHTTCCEEE
T ss_pred             CCCCCCHHHHHHHHHHHHhhhcCeeEEEEeCccC-CCHHHHHHHHHHHhCccCCCCCCCHHHHHHHHHHHHhhcCCeEEE
Confidence            99999995433 3333321    11211 11111 24556677777665321 1111234444455555543  568899


Q ss_pred             EeeCCCCC
Q 039731          276 LASKVDSA  283 (315)
Q Consensus       276 VLDDVd~~  283 (315)
                      ||||++..
T Consensus       130 ilDE~~~l  137 (389)
T 1fnn_A          130 VLDDAFNL  137 (389)
T ss_dssp             EEETGGGS
T ss_pred             EEECcccc
Confidence            99999886

>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}

Probab=83.02  E-value=0.8  Score=41.24  Aligned_cols=30  Identities=0%  Similarity=-0.193  Sum_probs=20.1

Q ss_pred             ChhHHHHHHHHhhCC-cEEEEEeeCCCCCCC
Q 039731          256 PSDHASIQIQRRHIR-LKVSLLASKVDSASS  285 (315)
Q Consensus       256 ~~~~~~~~i~~rL~~-kKvLIVLDDVd~~~q  285 (315)
                      +..+....+.+.+.. ++++|||||++...+
T Consensus       112 ~~~~~~~~l~~~~~~~~~~vlvlDe~~~~~~  142 (350)
T 2qen_A          112 SLREVFRELNDLGEELGEFIVAFDEAQYLRF  142 (350)
T ss_dssp             CHHHHHHHHHHHHHHHSCEEEEEETGGGGGG
T ss_pred             hHHHHHHHHHHHHhccCCEEEEEeCHHHHhc
Confidence            444455556555543 389999999998654

>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20

Probab=82.13  E-value=1.4  Score=39.70  Aligned_cols=27  Identities=4%  Similarity=-0.045  Sum_probs=17.2

Q ss_pred             hhHHHHHHHHhhCCcEEEEEeeCCCCCC
Q 039731          257 SDHASIQIQRRHIRLKVSLLASKVDSAS  284 (315)
Q Consensus       257 ~~~~~~~i~~rL~~kKvLIVLDDVd~~~  284 (315)
                      .......+.+.-. ++++|||||++..+
T Consensus       124 ~~~l~~~l~~~~~-~~~vlvlDe~~~~~  150 (357)
T 2fna_A          124 FANLLESFEQASK-DNVIIVLDEAQELV  150 (357)
T ss_dssp             HHHHHHHHHHTCS-SCEEEEEETGGGGG
T ss_pred             HHHHHHHHHhcCC-CCeEEEEECHHHhh
Confidence            3344444544322 48999999998854

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	315
d1fyva_	161	c.23.2.1 (A:) Toll-like receptor 1, TLR1 {Human (H	9e-22
d1fyxa_	149	c.23.2.1 (A:) Toll-like receptor 2, TLR2 {Human (H	2e-19

>d1fyva_ c.23.2.1 (A:) Toll-like receptor 1, TLR1 {Human (Homo sapiens) [TaxId: 9606]} Length = 161

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Toll/Interleukin receptor TIR domain
family: Toll/Interleukin receptor TIR domain
domain: Toll-like receptor 1, TLR1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 87.8 bits (217), Expect = 9e-22
 Identities = 24/123 (19%), Positives = 46/123 (37%), Gaps = 3/123 (2%)

Query: 8   LTSQSKYDVFLSFRGEDTRDNFTSHLHAALCRKKIKTFIDE-ELNRGDEISPAILKAIEG 66
           L    ++  F+S+ G D+     + L   L ++ ++  + E     G  I   I+  IE 
Sbjct: 7   LQRNLQFHAFISYSGHDSF-WVKNELLPNLEKEGMQICLHERNFVPGKSIVENIITCIEK 65

Query: 67  SKITVIIFSKNYASSKWCLDELVKILEC-HKMNSQMVVPVFYRIDPSDVRKQSGRFKDAF 125
           S  ++ + S N+  S+WC  EL           S  ++ +     P      S     + 
Sbjct: 66  SYKSIFVLSPNFVQSEWCHYELYFAHHNLFHEGSNSLILILLEPIPQYSIPSSYHKLKSL 125

Query: 126 VKH 128
           +  
Sbjct: 126 MAR 128

>d1fyxa_ c.23.2.1 (A:) Toll-like receptor 2, TLR2 {Human (Homo sapiens) [TaxId: 9606]} Length = 149

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Toll/Interleukin receptor TIR domain
family: Toll/Interleukin receptor TIR domain
domain: Toll-like receptor 2, TLR2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 81.3 bits (200), Expect = 2e-19
 Identities = 24/120 (20%), Positives = 41/120 (34%), Gaps = 5/120 (4%)

Query: 13  KYDVFLSFRGEDTRDNFTSHLHAAL--CRKKIKTFIDE-ELNRGDEISPAILKAIEGSKI 69
            YD F+S+   D      + +   L       K  + + +   G  I   I+ +IE S  
Sbjct: 5   CYDAFVSYSERD-AYWVENLMVQELENFNPPFKLCLHKRDFIHGKWIIDNIIDSIEKSHK 63

Query: 70  TVIIFSKNYASSKWCLDELVKIL-ECHKMNSQMVVPVFYRIDPSDVRKQSGRFKDAFVKH 128
           TV + S+N+  S+WC  EL          N+   + +           Q        +  
Sbjct: 64  TVFVLSENFVKSEWCKYELDFSHFRLFDENNDAAILILLEPIEKKAIPQRFCKLRKIMNT 123

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	315
d1fyva_	161	Toll-like receptor 1, TLR1 {Human (Homo sapiens) [	99.82
d1fyxa_	149	Toll-like receptor 2, TLR2 {Human (Homo sapiens) [	99.81
d2a5yb3	277	CED-4, NB-ARC domain {Caenorhabditis elegans [TaxI	98.86
d1wu7a1	97	Histidyl-tRNA synthetase (HisRS), C-terminal domai	87.67

>d1fyva_ c.23.2.1 (A:) Toll-like receptor 1, TLR1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Toll/Interleukin receptor TIR domain
family: Toll/Interleukin receptor TIR domain
domain: Toll-like receptor 1, TLR1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.82  E-value=1.3e-21  Score=164.98  Aligned_cols=99  Identities=22%  Similarity=0.437  Sum_probs=89.7

Q ss_pred             CCCCCceeEEEccccccCccchH-HHHHHHHhhCCCeEEeeC-ccCCCCcchHHHHHHHhhcCeEEEEeeccccCChHhH
Q 039731            8 LTSQSKYDVFLSFRGEDTRDNFT-SHLHAALCRKKIKTFIDE-ELNRGDEISPAILKAIEGSKITVIIFSKNYASSKWCL   85 (315)
Q Consensus         8 ~~~~~~ydVFIS~~~~D~r~~fv-~~L~~~L~~~gi~~f~D~-~~~~G~~i~~~i~~aI~~S~~~Ivv~S~~y~~S~wcl   85 (315)
                      ...+++|||||||+++|.  .|| ..|.+.|+++|+++|+|+ ++.+|+.+.++|.++|++|+.+|+|+|++|+.|.||.
T Consensus         7 ~~~~~~yDvFisys~~D~--~~v~~~L~~~Le~~g~~v~~d~~d~~~G~~~~~~i~~~i~~s~~~i~vlS~~~~~s~w~~   84 (161)
T d1fyva_           7 LQRNLQFHAFISYSGHDS--FWVKNELLPNLEKEGMQICLHERNFVPGKSIVENIITCIEKSYKSIFVLSPNFVQSEWCH   84 (161)
T ss_dssp             SSSCCCEEEEEECCGGGH--HHHHHTHHHHHHTTTCCEECTTTTCCTTSCHHHHHHHHHHHEEEEEEEESHHHHHHTSHH
T ss_pred             cCCCCeeEEEEecChhHH--HHHHHHHHHHHHhCCCcceEeccccccccccHHHHHHHHHhCCEEEEEecCccccChHHH
Confidence            346789999999999994  577 569999999999999999 9999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHh-hhCCCeeeeEEEe
Q 039731           86 DELVKILECH-KMNSQMVVPVFYR  108 (315)
Q Consensus        86 ~El~~i~~~~-~~~~~~ViPIfy~  108 (315)
                      .|+..++++. +.+..++|||+++
T Consensus        85 ~E~~~a~~~~~~~~~~~lIpV~l~  108 (161)
T d1fyva_          85 YELYFAHHNLFHEGSNSLILILLE  108 (161)
T ss_dssp             HHHHTTSCCCSCSSCSSEEEEESS
T ss_pred             HHHHHHHHHHHHcCCCceeEEEEe
Confidence            9999998764 4566799999975

>d1fyxa_ c.23.2.1 (A:) Toll-like receptor 2, TLR2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Toll/Interleukin receptor TIR domain
family: Toll/Interleukin receptor TIR domain
domain: Toll-like receptor 2, TLR2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.81  E-value=2.1e-21  Score=161.59  Aligned_cols=97  Identities=24%  Similarity=0.372  Sum_probs=86.5

Q ss_pred             CCCceeEEEccccccCccchH-HHHHHHHhh--CCCeEEeeC-ccCCCCcchHHHHHHHhhcCeEEEEeeccccCChHhH
Q 039731           10 SQSKYDVFLSFRGEDTRDNFT-SHLHAALCR--KKIKTFIDE-ELNRGDEISPAILKAIEGSKITVIIFSKNYASSKWCL   85 (315)
Q Consensus        10 ~~~~ydVFIS~~~~D~r~~fv-~~L~~~L~~--~gi~~f~D~-~~~~G~~i~~~i~~aI~~S~~~Ivv~S~~y~~S~wcl   85 (315)
                      .++.|||||||+++|.  .|| ..|.+.|++  .|+++|+|+ ++.+|+.+.++|.++|++|+.+|+|+||+|+.|.||.
T Consensus         2 ~~~~YDvFiSys~~D~--~~V~~~l~~~LE~~~~g~~~~~~~rd~~~G~~~~~~i~~~i~~S~~~i~vlS~~~l~s~wc~   79 (149)
T d1fyxa_           2 RNICYDAFVSYSERDA--YWVENLMVQELENFNPPFKLCLHKRDFIHGKWIIDNIIDSIEKSHKTVFVLSENFVKSEWCK   79 (149)
T ss_dssp             CSCCEEEEEECCGGGH--HHHHTHHHHHHTTSSSCCCEEEHHHHCCSSSCHHHHHHHHHHHEEEEEEEECHHHHHHHTHH
T ss_pred             CCCEEEEEEECchhhH--HHHHHHHHHHHHhcCCCceEEEecccccccchHHHHHHHHHHhCCEEEEEEcCccccccchH
Confidence            4789999999999994  566 568999976  489999998 9999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHh-hhCCCeeeeEEEe
Q 039731           86 DELVKILECH-KMNSQMVVPVFYR  108 (315)
Q Consensus        86 ~El~~i~~~~-~~~~~~ViPIfy~  108 (315)
                      .|+..++... +.++.++|||+++
T Consensus        80 ~E~~~a~~~~~~~~~~~iIpV~l~  103 (149)
T d1fyxa_          80 YELDFSHFRLFDENNDAAILILLE  103 (149)
T ss_dssp             HHSCCSCCTTCGGGTTCCEEEESS
T ss_pred             HHHHHHHHHHHHcCCceEEEEEec
Confidence            9998876554 5567899999985

>d2a5yb3 c.37.1.20 (B:109-385) CED-4, NB-ARC domain {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: CED-4, NB-ARC domain
species: Caenorhabditis elegans [TaxId: 6239]

Probab=98.86  E-value=5.3e-10  Score=100.41  Aligned_cols=113  Identities=9%  Similarity=-0.055  Sum_probs=67.7

Q ss_pred             CCCCCCceeeeeCC-CCCcccceeeeeeeccccccccCCCccc-----hhcc----cccccccee-eccccCCc-cCHHH
Q 039731          171 NGTKPNTFTVNVLP-PNEEECTQIRKLHYDFHDNVGTSGNSES-----IDRS----GELEVESIC-REQINAPQ-QQRSS  238 (315)
Q Consensus       171 Vg~~~r~~~v~~Ll-~~~~~~~~l~~i~~d~~~~~GmGGiGK~-----vy~~----i~~~Fe~~~-~~~s~~~~-~gl~~  238 (315)
                      .|++..+..+...+ ...+....+++|+       ||||||||     +|+.    ...+|++++ +.+++... ..+..
T Consensus        23 ~gR~~~~~~i~~~L~~~~~~~~~~v~I~-------GmgGiGKTtLA~~v~~~~~~~~~~~f~~~~Wv~vs~~~~~~~l~~   95 (277)
T d2a5yb3          23 YIREYHVDRVIKKLDEMCDLDSFFLFLH-------GRAGSGKSVIASQALSKSDQLIGINYDSIVWLKDSGTAPKSTFDL   95 (277)
T ss_dssp             CCCHHHHHHHHHHHHHHTTSSSEEEEEE-------CSTTSSHHHHHHHHHHHCSSTBTTTBSEEEEEECCCCSTTHHHHH
T ss_pred             eCcHHHHHHHHHHHHhccCCCceEEEEE-------CCCCCCHHHHHHHHHHhhhhhhhhcCceEEEEEecCCCCHHHHHH
Confidence            34444443333322 2244556778888       99999994     4654    455688776 55554431 12333


Q ss_pred             HHHHHHHHhcC-CC------CCcCChhHHHHHHHHhhCCcEEEEEeeCCCCCCCccccc
Q 039731          239 LFSHIIAKGGG-LY------AFLAPSDHASIQIQRRHIRLKVSLLASKVDSASSPELST  290 (315)
Q Consensus       239 Lq~~LL~~il~-~~------~~~~~~~~~~~~i~~rL~~kKvLIVLDDVd~~~qle~~~  290 (315)
                      ....++..+.. ..      ...........++++.|.+||+||||||||+.+|++.+.
T Consensus        96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~kr~LlVLDDv~~~~~~~~~~  154 (277)
T d2a5yb3          96 FTDILLMLKSEDDLLNFPSVEHVTSVVLKRMICNALIDRPNTLFVFDDVVQEETIRWAQ  154 (277)
T ss_dssp             HHHHHHHHTTTSCCTTCCCCTTCCHHHHHHHHHHHHTTSTTEEEEEEEECCHHHHHHHH
T ss_pred             HHHHHHHHhcchhhcCCccchhhhhHHHHHHHHHHHhccCCeeEecchhhHHhhhhhhc
Confidence            33344443332 11      112223335567889999999999999999999998653

>d1wu7a1 c.51.1.1 (A:330-426) Histidyl-tRNA synthetase (HisRS), C-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: Alpha and beta proteins (a/b)
fold: Anticodon-binding domain-like
superfamily: Class II aaRS ABD-related
family: Anticodon-binding domain of Class II aaRS
domain: Histidyl-tRNA synthetase (HisRS), C-terminal domain
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=87.67  E-value=0.74  Score=32.73  Aligned_cols=61  Identities=13%  Similarity=0.157  Sum_probs=45.3

Q ss_pred             CceeEEEccccccCccchHHHHHHHHhhCCCeEEeeCccCCCCcchHHHHHHHhhcCeEEEEeec
Q 039731           12 SKYDVFLSFRGEDTRDNFTSHLHAALCRKKIKTFIDEELNRGDEISPAILKAIEGSKITVIIFSK   76 (315)
Q Consensus        12 ~~ydVFIS~~~~D~r~~fv~~L~~~L~~~gi~~f~D~~~~~G~~i~~~i~~aI~~S~~~Ivv~S~   76 (315)
                      ...+|||..-++.. ..++..|...|++.||++.+|.   .+..+...+..|-..---+++|+-+
T Consensus         2 ~~~~V~i~~~g~~~-~~~~~~l~~~Lr~~gi~v~~d~---~~~~l~kq~~~A~~~~~~~~iiiG~   62 (97)
T d1wu7a1           2 EKKSVYICRVGKIN-SSIMNEYSRKLRERGMNVTVEI---MERGLSAQLKYASAIGADFAVIFGE   62 (97)
T ss_dssp             SSCEEEEEEESSCC-HHHHHHHHHHHHTTTCEEEECC---SCCCHHHHHHHHHHTTCSEEEEEEH
T ss_pred             CCceEEEEEeCHHH-HHHHHHHHHHHHHCCCEEEEEC---CCCcHHHHHHHHHhcCCCeEEecCC
Confidence            35789999988876 5799999999999999999986   2456777777765544444555543