Citrus Sinensis ID: 039741

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500------
MENYSYNSYPDSGDSSPRSREIDFENPPPWEDNQNPQAYKAKFMCSYGGKIHPRPHDNQLAYIGGETKILAADRAIKFASMISKLAALCGDNDVSFKYQLPGEDLDALISVTNDDDLEHMMNEYDRLYRASAKPARMRLFLFPAGTTSSFGSEGSKSDRDRFVDALNSGPSHVTDSKKIANNVDFLFGLEKGVPIPPQKIPESVAVPPPPPPDYHVADDRAIGSDRVVYSDHGLNPVEIQRQLQRLQIREQQQQHHQQQQQQQQQQQHHEQPHMQEAIYFRKSDDNLTGGVYMPPASLPVQQTTSFVPEKQIPAPNYAGNVTTTHVQPEQPVYMISAPTAAPGTTTVYHHHVQPGSAQPQMIRQVAGQSGQQYYQNMQRMAPGPGPGPDVYREQPVYNMVVPPQQTQAPPPMSAPPPSLPQMGVVRPGGGGGVAVTDTGYTQVAYDSGVGRQVYYTAPGGGMVVPPQYQGVGVGVAVSGGGEMRHAGSGGGLSQEGKVNKVSQTSV
ccccccccccccccccccccccccccccccccccccccccEEEEEEcccEEcccccccccEEEcccEEEEEEcccccHHHHHHHHHHHHccccEEEEEcccccccccEEEcccHHHHHHHHHHHHHHHHccccccEEEEEEEccccccccccccccccHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEccccccccccccccccccccccccccccccccccccccccccccccccccc
cccccccccccccccccccccccccccccccccccccccEEEEEEccccEEccccccccEEEEcccEEEEEEcccccHHHHHHHHHHHHccccEEEEEEcccccHHEEEEEccHHHHHHHHHHHHHHHHccccccEEEEEEEccccccccccccccccHHHHHHHHccccccccccccccccccEcccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHcccccccccccccccHHHHccccccccccccHHHccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEcccccccccccccccccccccccccccccccccccccccccHHHcccccccccccEEcccccccccccccccccccccccccccccccEEEcccccccccccccEEEEEEEcccccEEEEEcccccEEcccccccccccccccccccEEEccccccEEEcccccccccccc
menysynsypdsgdssprsreidfenpppwednqnpqayKAKFMcsyggkihprphdnqlayigGETKILAADRAIKFASMISKLAAlcgdndvsfkyqlpgedldALISVTNDDDLEHMMNEYDRLYRasakparmrlflfpagttssfgsegsksdrDRFVDalnsgpshvtdskkianNVDFLfglekgvpippqkipesvavppppppdyhvaddraigsdrvvysdhglnpVEIQRQLQRLQIREQQQQHHQQQQQQQQQQQHHEQPHMQEAIYFrksddnltggvymppaslpvqqttsfvpekqipapnyagnvttthvqpeqpvymisaptaapgtttvyhhhvqpgsaqpqMIRQVAGQSGQQYYQNMqrmapgpgpgpdvyreqpvynmvvppqqtqapppmsapppslpqmgvvrpgggggvavtdtgytqvaydsgvgrqvyytapgggmvvppqyqgvGVGVAVsgggemrhagsggglsqegkvnkvsqtsv
menysynsypdsgdssprsrEIDFenpppwednqnPQAYKAKFMCSYGGKIHPRPHDNQLAYIGGETKILAADRAIKFASMISKLAALCGDNDVSFKYQLPGEDLDALISVTNDDDLEHMMNEYDRLYRASAKPARMRLFLFPAgttssfgsegsksdRDRFVDALnsgpshvtdskkiANNVDFLFGLEKGVPIPPQKIPESVAVPPPPPPDYHVADDRAIGSDRVVYSDHGLNPVEIQRQLQRLQIREQQQQHHQQQQQQQQQQQHHEQPHMQEAIYFRKSDDNLTGGVYMPPASLPVQQTTSFVPEKQIPAPNYAGNVTTTHVQPEQPVYMISAPTAAPGTTTVYHHHVQPGSAQPQMIRQVAGQSGQQYYQNMQRMAPGPGPGPDVYREQPVYNMVVPPQQTQAPPPMSAPPPSLPQMGVVRPGGGGGVAVTDTGYTQVAYDSGVGRQVYYTAPGGGMVVPPQYQGVGVGVAVSGGGEMRHagsggglsqegkvnkvsqtsv
MENYSYNSYPDSGDSSPRSREIDFENPPPWEDNQNPQAYKAKFMCSYGGKIHPRPHDNQLAYIGGETKILAADRAIKFASMISKLAALCGDNDVSFKYQLPGEDLDALISVTNDDDLEHMMNEYDRLYRASAKPARMRLFLFPAGTTSSFGSEGSKSDRDRFVDALNSGPSHVTDSKKIANNVDFLFGLEKGVPIPPQKIPESVAVppppppDYHVADDRAIGSDRVVYSDHGLNPVeiqrqlqrlqireqqqqhhqqqqqqqqqqqhheqPHMQEAIYFRKSDDNLTGGVYMPPASLPVQQTTSFVPEKQIPAPNYAGNVTTTHVQPEQPVYMISAPTAAPGTTTVYHHHVQPGSAQPQMIRQVAGQSGQQYYQNMQRMAPGPGPGPDVYREQPVYNMVVppqqtqapppmsapppslpqmgvvrpgggggvavtdtgytQVAYDSGVGRQVYYTApgggmvvppqyqgvgvgvavsgggEMRHAGSGGGLSQEGKVNKVSQTSV
**************************************YKAKFMCSYGGKIHPRPHDNQLAYIGGETKILAADRAIKFASMISKLAALCGDNDVSFKYQLPGEDLDALISVTNDDDLEHMMNEYDRLYRASAKPARMRLFLFP***********************************IANNVDFLFGLEKG**********************************VVYS************************************************Y**********GVY************************YAGNVTTTH*****PVYMISA******TTTVYH****************************************************************************************TGYTQVAYDSGVGRQVYYTAPGGGMVVPPQYQGVGVGVAV*****************************
******************************************FMCSYGGKIHPRPHDNQLAYIGGETKILAADRAIKFASMISKLAALCGDNDVSFKYQLPGEDLDALISVTNDDDLEHMMNEYDRLYRASAKPARMRLFL*****************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************
*********************IDFENPPPWEDNQNPQAYKAKFMCSYGGKIHPRPHDNQLAYIGGETKILAADRAIKFASMISKLAALCGDNDVSFKYQLPGEDLDALISVTNDDDLEHMMNEYDRLYRASAKPARMRLFLFPAGTT**********DRDRFVDALNSGPSHVTDSKKIANNVDFLFGLEKGVPIPPQKIPESVAVPPPPPPDYHVADDRAIGSDRVVYSDHGLNPVEIQRQLQRLQ*************************HMQEAIYFRKSDDNLTGGVYMPPASLPVQQTTSFVPEKQIPAPNYAGNVTTTHVQPEQPVYMISAPTAAPGTTTVYHHHVQPGSAQPQMIRQVAGQSGQQYYQNMQRMAPGPGPGPDVYREQPVYNMVVPPQ***********PPSLPQMGVVRPGGGGGVAVTDTGYTQVAYDSGVGRQVYYTAPGGGMVVPPQYQGVGVGVAVSGGGEM***********************
*************************************AYKAKFMCSYGGKIHPRPHDNQLAYIGGETKILAADRAIKFASMISKLAALCGDNDVSFKYQLPGEDLDALISVTNDDDLEHMMNEYDRLYRASAKPARMRLFLFPAG**************DRFVD**NSGP*******************EK*********************************DRVVYSDHGLNPVEIQRQLQRLQIREQQQ***********************A*Y**KSDDNLTGGVYMPPASLPVQQTTSFVPEKQIPAPNYAGNVTTTHVQPEQPVYMISAPTAAPGTTTVYHHHVQPGSAQPQMIRQVAGQSGQQYYQNMQRMAPGPGPGPDVYREQPVYNMVVPPQQTQAPPPMSAPPPSLPQMGVVRPGGGGGVAVTDTGYTQVAYDSGVGRQVYYTAPGGGMVVPPQYQGVGVGVAVSGGGEMRHAGSGGGLSQEGK*********
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iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MENYSYNSYPDSGDSSPRSREIDFENPPPWEDNQNPQAYKAKFMCSYGGKIHPRPHDNQLAYIGGETKILAADRAIKFASMISKLAALCGDNDVSFKYQLPGEDLDALISVTNDDDLEHMMNEYDRLYRASAKPARMRLFLFPAGTTSSFGSEGSKSDRDRFVDALNSGPSHVTDSKKIANNVDFLFGLEKGVPIPPQKIPESVAVPPPPPPDYHVADDRAIGSDRVVYSDHGLNPVEIQRQLQRLQxxxxxxxxxxxxxxxxxxxxxHEQPHMQEAIYFRKSDDNLTGGVYMPPASLPVQQTTSFVPEKQIPAPNYAGNVTTTHVQPEQPVYMISAPTAAPGTTTVYHHHVQPGSAQPQMIRQVAGQSGQQYYQNMQRMAPGPGPGPDVYREQPVYNMVVPPQQTQAPPPMSAPPPSLPQMGVVRPGGGGGVAVTDTGYTQVAYDSGVGRQVYYTAPGGGMVVPPQYQGVGVGVAVSGGGEMRHAGSGGGLSQEGKVNKVSQTSV
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query506
255554563475 ATP binding protein, putative [Ricinus c 0.905 0.964 0.581 1e-135
224056333479 predicted protein [Populus trichocarpa] 0.873 0.922 0.555 1e-130
224103833448 predicted protein [Populus trichocarpa] 0.768 0.868 0.575 1e-118
449438272487 PREDICTED: uncharacterized protein LOC10 0.887 0.921 0.496 1e-110
225429236467 PREDICTED: uncharacterized protein LOC10 0.859 0.931 0.5 7e-99
297797461502 hypothetical protein ARALYDRAFT_496651 [ 0.879 0.886 0.466 7e-89
356519487473 PREDICTED: uncharacterized protein LOC10 0.865 0.926 0.443 1e-87
297811055514 hypothetical protein ARALYDRAFT_487778 [ 0.814 0.801 0.452 3e-87
15237703513 octicosapeptide/Phox/Bem1p domain-contai 0.887 0.875 0.460 3e-86
356554844446 PREDICTED: uncharacterized protein LOC10 0.818 0.928 0.452 5e-86
>gi|255554563|ref|XP_002518320.1| ATP binding protein, putative [Ricinus communis] gi|223542540|gb|EEF44080.1| ATP binding protein, putative [Ricinus communis] Back     alignment and taxonomy information
 Score =  486 bits (1252), Expect = e-135,   Method: Compositional matrix adjust.
 Identities = 304/523 (58%), Positives = 352/523 (67%), Gaps = 65/523 (12%)

Query: 1   MENYSYNSYPDSGDSSPRSREIDFENPPPWED-NQNPQAYKAKFMCSYGGKIHPRPHDNQ 59
           MEN+SYNSYP+SGDSSPRSREI+FENP PWED +Q PQ+YKAKFMCSYGGKIHPRPHDNQ
Sbjct: 1   MENHSYNSYPESGDSSPRSREIEFENPTPWEDQSQQPQSYKAKFMCSYGGKIHPRPHDNQ 60

Query: 60  LAYIGGETKILAADRAIKFASMISKLAALCGDNDVSFKYQLPGEDLDALISVTNDDDLEH 119
           LAYIGG+TKILA DR IKF+ M+SKLA+L GD D+SFKYQLPGEDLDALISVTNDDDLEH
Sbjct: 61  LAYIGGDTKILAVDRNIKFSVMMSKLASLSGDTDISFKYQLPGEDLDALISVTNDDDLEH 120

Query: 120 MMNEYDRLYRASAKPARMRLFLFPAGTT--SSFGSEGSKSDRDRFVDALNSGPSHV---T 174
           MM+EYDRL+RAS KP RMRLFLFP   +  +SFGSEGSKS+RDRFV+ALNSGP+HV   T
Sbjct: 121 MMHEYDRLFRASNKPVRMRLFLFPVNPSPAASFGSEGSKSERDRFVEALNSGPTHVPEST 180

Query: 175 DSKKIANNVDFLFGLEKGVPIPPQKIPESVAVPPPPPPDYHVA---DDRAIGSDRVVYSD 231
           ++K + NNVDFLFGLEKG+   P   P +  +  P   + HV    DDR IGSD      
Sbjct: 181 NTKPLQNNVDFLFGLEKGI---PPPPPPAAPIKVPDLAEVHVGVGHDDRVIGSD------ 231

Query: 232 HGLNPVEIQRQLQRLQIREQQQQHHQQQQQQQQQQQHHEQPHMQEAIYFRKSDDNLTGGV 291
               PV I  QLQR+QIREQ+QQ   ++         +    +    + +K  D +    
Sbjct: 232 ----PVAIHTQLQRMQIREQEQQTMYRKNSDDNLMGGYSGGGVGGEYFGQKLPDKIP--- 284

Query: 292 YMPPASLPVQQTTSFVPEKQIPA---PNYAGNVTTTHVQPEQPVYMISAPTAAPGTTTVY 348
             PP+SLPV     F PEKQI +   P  A  V TT + PEQ +Y++      PG  TVY
Sbjct: 285 --PPSSLPVTAPAGFWPEKQIQSGGFPQAAMAVATTPMPPEQQLYVLQG--HPPG--TVY 338

Query: 349 HHHVQPGSAQPQMIRQVAGQSGQQYYQNMQRMAPGPGPGPDVYREQPVYNMVVPPQQTQA 408
           H  V         +RQV GQ+GQ YY  MQRM  G G GP+VYREQP+YNMV PPQQ Q 
Sbjct: 339 HAPV---------MRQVTGQTGQPYY--MQRM--GGGGGPEVYREQPMYNMVPPPQQ-QG 384

Query: 409 PPPMSAPPPSLPQMGVVRPGGGGGVAVTDTGYTQVAYDSGVGRQVYYTAPGGGMV--VPP 466
           P            MGV+R GG GGV +TD GY QVAYDSGVGRQVYYTA GGGMV     
Sbjct: 385 P------------MGVMRQGGPGGVGMTDGGYAQVAYDSGVGRQVYYTAQGGGMVQQPQQ 432

Query: 467 QYQGVGVGVAVSGGGEMRH---AGSGGGLSQEGKVNKVSQTSV 506
                GVG  V+  GEMRH      GG L+QEGKV KVSQ+SV
Sbjct: 433 PSPYQGVGGGVAVSGEMRHAGGGAGGGALNQEGKVVKVSQSSV 475

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|224056333|ref|XP_002298807.1| predicted protein [Populus trichocarpa] gi|222846065|gb|EEE83612.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|224103833|ref|XP_002313211.1| predicted protein [Populus trichocarpa] gi|222849619|gb|EEE87166.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|449438272|ref|XP_004136913.1| PREDICTED: uncharacterized protein LOC101208862 [Cucumis sativus] gi|449478804|ref|XP_004155422.1| PREDICTED: uncharacterized LOC101208862 [Cucumis sativus] Back     alignment and taxonomy information
>gi|225429236|ref|XP_002263901.1| PREDICTED: uncharacterized protein LOC100254138 [Vitis vinifera] Back     alignment and taxonomy information
>gi|297797461|ref|XP_002866615.1| hypothetical protein ARALYDRAFT_496651 [Arabidopsis lyrata subsp. lyrata] gi|297312450|gb|EFH42874.1| hypothetical protein ARALYDRAFT_496651 [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|356519487|ref|XP_003528404.1| PREDICTED: uncharacterized protein LOC100820420 [Glycine max] Back     alignment and taxonomy information
>gi|297811055|ref|XP_002873411.1| hypothetical protein ARALYDRAFT_487778 [Arabidopsis lyrata subsp. lyrata] gi|297319248|gb|EFH49670.1| hypothetical protein ARALYDRAFT_487778 [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|15237703|ref|NP_201248.1| octicosapeptide/Phox/Bem1p domain-containing protein [Arabidopsis thaliana] gi|10178224|dbj|BAB11604.1| unnamed protein product [Arabidopsis thaliana] gi|17064916|gb|AAL32612.1| Unknown protein [Arabidopsis thaliana] gi|20259930|gb|AAM13312.1| unknown protein [Arabidopsis thaliana] gi|20260126|gb|AAM12961.1| unknown protein [Arabidopsis thaliana] gi|31711922|gb|AAP68317.1| At5g64430 [Arabidopsis thaliana] gi|332010509|gb|AED97892.1| octicosapeptide/Phox/Bem1p domain-containing protein [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|356554844|ref|XP_003545752.1| PREDICTED: uncharacterized protein LOC100780332 [Glycine max] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query506
TAIR|locus:2179366513 AT5G64430 "AT5G64430" [Arabido 0.452 0.446 0.604 1.6e-85
TAIR|locus:2144721531 AT5G09620 "AT5G09620" [Arabido 0.444 0.423 0.578 7.5e-76
TAIR|locus:2115658477 AT4G05150 [Arabidopsis thalian 0.286 0.303 0.469 1e-36
TAIR|locus:2038836 720 PDE331 "PIGMENT DEFECTIVE 331" 0.373 0.262 0.435 1.6e-36
TAIR|locus:2089648 666 AT3G18230 [Arabidopsis thalian 0.330 0.250 0.433 8.7e-32
TAIR|locus:2158839288 AT5G49920 "AT5G49920" [Arabido 0.241 0.423 0.427 1.6e-24
TAIR|locus:2174552 1054 AT5G57610 [Arabidopsis thalian 0.290 0.139 0.402 2.7e-22
TAIR|locus:2102787 1171 AT3G46920 [Arabidopsis thalian 0.266 0.115 0.405 9.5e-21
TAIR|locus:2033595174 AT1G70640 "AT1G70640" [Arabido 0.215 0.626 0.437 1.7e-20
TAIR|locus:2044702 1257 AT2G35050 [Arabidopsis thalian 0.250 0.101 0.403 2.9e-19
TAIR|locus:2179366 AT5G64430 "AT5G64430" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 712 (255.7 bits), Expect = 1.6e-85, Sum P(3) = 1.6e-85
 Identities = 151/250 (60%), Positives = 178/250 (71%)

Query:     1 MENYSYNSYPDSGDSSPRSREIDFENPPP-WED-NQNPQ--AYKAKFMCSYGGKIHPRPH 56
             ME +SYNSYPDS DSSPRSREI+F+NPPP W+D NQN Q  +YK KFMCSYGGKI PRPH
Sbjct:     1 MEKFSYNSYPDSTDSSPRSREIEFDNPPPPWDDQNQNQQQHSYKVKFMCSYGGKIQPRPH 60

Query:    57 DNQLAYIGGETKILAADRAIKFASMISKLAALCGDND-----VSFKYQLPGEDLDALISV 111
             DNQL Y+ GETKIL+ DR I+F  + SKL+ +CG  D     V+FKYQLPGEDLDALISV
Sbjct:    61 DNQLTYVNGETKILSVDRGIRFPVLASKLSTVCGGGDGGGGEVTFKYQLPGEDLDALISV 120

Query:   112 TNDDDLEHMMNEYDRLYRASAKPARMRLFLFPAGTTSSFGSEGS-KSDRDRFVDALNSGP 170
             TNDDDLEHMM+EYDRL R S+KPARMRLFLFPA  +S FGS+ S +SDRDRFV+ALN+ P
Sbjct:   121 TNDDDLEHMMHEYDRLLRLSSKPARMRLFLFPA--SSGFGSQSSTQSDRDRFVEALNTVP 178

Query:   171 SHVTDSKKIA---NNVDFLFGLEKGVPIPPQKIPESVAVXXXXXXDYHVADDRAIGSDRV 227
                   K +    NN DFLFG EK V  PP   P  V +      +  + +D      RV
Sbjct:   179 RLSESEKSVTAPPNNADFLFGSEK-VAAPPPPPPAEVKLPVPVALEPPLFND-----PRV 232

Query:   228 VYSDHGLNPV 237
             +  DH +NP+
Sbjct:   233 IQPDHVVNPM 242
GO:0003674 "molecular_function" evidence=ND
GO:0005634 "nucleus" evidence=ISM
GO:0008150 "biological_process" evidence=ND
GO:0009941 "chloroplast envelope" evidence=IDA
TAIR|locus:2144721 AT5G09620 "AT5G09620" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2115658 AT4G05150 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2038836 PDE331 "PIGMENT DEFECTIVE 331" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2089648 AT3G18230 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2158839 AT5G49920 "AT5G49920" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2174552 AT5G57610 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2102787 AT3G46920 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2033595 AT1G70640 "AT1G70640" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2044702 AT2G35050 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query506
cd0641097 cd06410, PB1_UP2, Uncharacterized protein 2 1e-48
pfam0056484 pfam00564, PB1, PB1 domain 8e-21
cd0599281 cd05992, PB1, The PB1 domain is a modular domain m 2e-20
smart0066681 smart00666, PB1, PB1 domain 7e-19
pfam09770 804 pfam09770, PAT1, Topoisomerase II-associated prote 3e-05
PRK10263 1355 PRK10263, PRK10263, DNA translocase FtsK; Provisio 8e-04
PRK04239110 PRK04239, PRK04239, hypothetical protein; Provisio 0.002
pfam04684508 pfam04684, BAF1_ABF1, BAF1 / ABF1 chromatin reorga 0.003
>gnl|CDD|99731 cd06410, PB1_UP2, Uncharacterized protein 2 Back     alignment and domain information 
 Score =  162 bits (412), Expect = 1e-48
 Identities = 60/100 (60%), Positives = 77/100 (77%), Gaps = 4/100 (4%)

Query: 44  MCSYGGKIHPRPHDNQLAYIGGETKILAADRAIKFASMISKLAALCG-DNDVSFKYQLPG 102
           +CSYGG+I PRP D QL Y+GGET+I++ DR+I F  ++SKL+ L G    V+ KYQLP 
Sbjct: 1   LCSYGGRILPRPPDGQLRYVGGETRIVSVDRSISFKELVSKLSELFGAGVVVTLKYQLPD 60

Query: 103 EDLDALISVTNDDDLEHMMNEYDRLYRASAKPARMRLFLF 142
           EDLDALISV+ND+DL++MM EYDRL   S   AR+R+FLF
Sbjct: 61  EDLDALISVSNDEDLKNMMEEYDRL---SGGSARLRVFLF 97

The PB1 domain is a modular domain mediating specific protein-protein interaction which play a role in many critical cell processes such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. Length = 97
>gnl|CDD|215996 pfam00564, PB1, PB1 domain Back     alignment and domain information
>gnl|CDD|99716 cd05992, PB1, The PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes, such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity Back     alignment and domain information
>gnl|CDD|214770 smart00666, PB1, PB1 domain Back     alignment and domain information
>gnl|CDD|220392 pfam09770, PAT1, Topoisomerase II-associated protein PAT1 Back     alignment and domain information
>gnl|CDD|236669 PRK10263, PRK10263, DNA translocase FtsK; Provisional Back     alignment and domain information
>gnl|CDD|179798 PRK04239, PRK04239, hypothetical protein; Provisional Back     alignment and domain information
>gnl|CDD|113452 pfam04684, BAF1_ABF1, BAF1 / ABF1 chromatin reorganising factor Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 506
cd0641097 PB1_UP2 Uncharacterized protein 2. The PB1 domain 100.0
smart0066681 PB1 PB1 domain. Phox and Bem1p domain, present in 99.35
PF0056484 PB1: PB1 domain; InterPro: IPR000270 The Phox and 99.04
cd0599281 PB1 The PB1 domain is a modular domain mediating s 98.94
cd0640782 PB1_NLP A PB1 domain is present in NIN like protei 98.6
cd0640886 PB1_NoxR The PB1 domain is present in the Epichloe 98.19
cd0639891 PB1_Joka2 The PB1 domain is present in the Nicotia 97.95
cd0640181 PB1_TFG The PB1 domain found in TFG protein, an on 97.94
cd0639681 PB1_NBR1 The PB1 domain is an essential part of NB 97.92
cd0640579 PB1_Mekk2_3 The PB1 domain is present in the two m 97.71
cd0640483 PB1_aPKC PB1 domain is an essential modular domain 97.6
cd0639782 PB1_UP1 Uncharacterized protein 1. The PB1 domain 97.37
cd0640380 PB1_Par6 The PB1 domain is an essential part of Pa 96.88
cd0640287 PB1_p62 The PB1 domain is an essential part of p62 96.84
cd0640680 PB1_P67 A PB1 domain is present in p67 proteins wh 96.43
cd0640986 PB1_MUG70 The MUG70 protein is a product of the me 96.22
cd0639992 PB1_P40 The PB1 domain is essential part of the p4 95.59
KOG35982220 consensus Thyroid hormone receptor-associated prot 93.39
cd0641178 PB1_p51 The PB1 domain is present in the p51 prote 92.73
KOG43692131 consensus RTK signaling protein MASK/UNC-44 [Signa 91.11
KOG0695 593 consensus Serine/threonine protein kinase [Signal 88.12
PF11498468 Activator_LAG-3: Transcriptional activator LAG-3; 87.99
cd0639591 PB1_Map2k5 PB1 domain is essential part of the mit 82.21
>cd06410 PB1_UP2 Uncharacterized protein 2 Back     alignment and domain information 
Probab=100.00  E-value=1.6e-40  Score=282.06  Aligned_cols=96  Identities=63%  Similarity=1.099  Sum_probs=91.4

Q ss_pred             EeecCCEeecCCCCCCeeeecCceeEEEecCCCChHHHHHHHHhHhCCCc-eEEEEeCCCCCcCceeeccCchHHHHHHH
Q 039741           44 MCSYGGKIHPRPHDNQLAYIGGETKILAADRAIKFASMISKLAALCGDND-VSFKYQLPGEDLDALISVTNDDDLEHMMN  122 (506)
Q Consensus        44 mCSyGGrIlPRP~DGkLrYVGGETRIVsV~RsiSF~eL~~KLs~l~g~~d-vsLKYQLPgEDLDaLISVssDEDL~nMme  122 (506)
                      ||||||||+||++||+|+|+|||||||+|+|++||.||++||+++|+... ++||||||+||||+||||+|||||+|||+
T Consensus         1 ~cs~GG~i~pr~~dg~l~Y~GG~tr~i~V~r~~s~~el~~kl~~~~~~~~~~~lky~Lp~edld~Lisv~~DeDl~~M~~   80 (97)
T cd06410           1 LCSYGGRILPRPPDGQLRYVGGETRIVSVDRSISFKELVSKLSELFGAGVVVTLKYQLPDEDLDALISVSNDEDLKNMME   80 (97)
T ss_pred             CcccCCEEeCcCCCCCEEEcCCceEEEEEcCCCCHHHHHHHHHHHhCCCCceEEEEEcCCCCcceeEEecCcHHHHHHHH
Confidence            79999999999999999999999999999999999999999999997554 79999999999999999999999999999


Q ss_pred             HHHHhhhcCCCCCeEEEEEe
Q 039741          123 EYDRLYRASAKPARMRLFLF  142 (506)
Q Consensus       123 EYDRl~r~s~~p~RLRvFLF  142 (506)
                      ||||+   +.+++|||||||
T Consensus        81 e~~~~---~~~~~rirvflf   97 (97)
T cd06410          81 EYDRL---SGGSARLRVFLF   97 (97)
T ss_pred             hhccc---cCCCceEEEEEC
Confidence            99998   456789999998

The PB1 domain is a modular domain mediating specific protein-protein interaction which play a role in many critical cell processes such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions.
>smart00666 PB1 PB1 domain Back     alignment and domain information
>PF00564 PB1: PB1 domain; InterPro: IPR000270 The Phox and Bem1p domain, is present in many eukaryotic cytoplasmic signalling proteins Back     alignment and domain information
>cd05992 PB1 The PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes, such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity Back     alignment and domain information
>cd06407 PB1_NLP A PB1 domain is present in NIN like proteins (NLP), a key enzyme in a process of establishment of symbiosis betweeen legumes and nitrogen fixing bacteria (Rhizobium) Back     alignment and domain information
>cd06408 PB1_NoxR The PB1 domain is present in the Epichloe festucae NoxR protein (NADPH oxidase regulator), a key regulator of NADPH oxidase isoform, NoxA Back     alignment and domain information
>cd06398 PB1_Joka2 The PB1 domain is present in the Nicotiana plumbaginifolia Joka2 protein which interacts with sulfur stress inducible UP9 protein Back     alignment and domain information
>cd06401 PB1_TFG The PB1 domain found in TFG protein, an oncogenic gene product and fusion partner to nerve growth factor tyrosine kinase receptor TrkA and to the tyrosine kinase ALK Back     alignment and domain information
>cd06396 PB1_NBR1 The PB1 domain is an essential part of NBR1 protein, next to BRCA1, a scaffold protein mediating specific protein-protein interaction with both titin protein kinase and with another scaffold protein p62 Back     alignment and domain information
>cd06405 PB1_Mekk2_3 The PB1 domain is present in the two mitogen-activated protein kinase kinases MEKK2 and MEKK3 which are two members of the signaling kinase cascade involved in angiogenesis and early cardiovascular development Back     alignment and domain information
>cd06404 PB1_aPKC PB1 domain is an essential modular domain of the atypical protein kinase C (aPKC) which in complex with Par6 and Par3 proteins is crucial for establishment of apical-basal polarity of animal cells Back     alignment and domain information
>cd06397 PB1_UP1 Uncharacterized protein 1 Back     alignment and domain information
>cd06403 PB1_Par6 The PB1 domain is an essential part of Par6 protein which in complex with Par3 and aPKC proteins is crucial for establishment of apical-basal polarity of animal cells Back     alignment and domain information
>cd06402 PB1_p62 The PB1 domain is an essential part of p62 scaffold protein (alias sequestosome 1,SQSTM) involved in cell signaling, receptor internalization, and protein turnover Back     alignment and domain information
>cd06406 PB1_P67 A PB1 domain is present in p67 proteins which forms a signaling complex with p40, a crucial step for activation of NADPH oxidase during phagocytosis Back     alignment and domain information
>cd06409 PB1_MUG70 The MUG70 protein is a product of the meiotically up-regulated gene 70 which has a role in meiosis and harbors a PB1 domain Back     alignment and domain information
>cd06399 PB1_P40 The PB1 domain is essential part of the p40 adaptor protein which plays an important role in activating phagocyte NADPH oxidase during phagocytosis Back     alignment and domain information
>KOG3598 consensus Thyroid hormone receptor-associated protein complex, subunit TRAP230 [Transcription] Back     alignment and domain information
>cd06411 PB1_p51 The PB1 domain is present in the p51 protein, a homolog of the p67 protein Back     alignment and domain information
>KOG4369 consensus RTK signaling protein MASK/UNC-44 [Signal transduction mechanisms] Back     alignment and domain information
>KOG0695 consensus Serine/threonine protein kinase [Signal transduction mechanisms] Back     alignment and domain information
>PF11498 Activator_LAG-3: Transcriptional activator LAG-3; InterPro: IPR021587 The C Back     alignment and domain information
>cd06395 PB1_Map2k5 PB1 domain is essential part of the mitogen-activated protein kinase kinase 5 (Map2k5, alias MEK5) one of the key member of the signaling kinases cascade which involved in angiogenesis and early cardiovascular development Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query506
1m2v_B 926 SEC24, protein transport protein SEC24, SEC24P, SE 3e-05
1m2v_B 926 SEC24, protein transport protein SEC24, SEC24P, SE 9e-05
1m2v_B 926 SEC24, protein transport protein SEC24, SEC24P, SE 4e-04
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 6e-05
>1m2v_B SEC24, protein transport protein SEC24, SEC24P, SEC24 protein, abnormal nuclear; zinc-finger, beta barrel, VWA domain, gelsolin domain,; 2.75A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1 Length = 926 Back     alignment and structure
 Score = 45.6 bits (107), Expect = 3e-05
 Identities = 25/174 (14%), Positives = 47/174 (27%), Gaps = 10/174 (5%)

Query: 254 QHHQQQQQQQQQQQHHEQPHMQEAIYFRKSDDNLTGGVYMPPASLPVQQTTSFVPEKQIP 313
            H ++   Q Q Q       +Q+   F    D    G+      +P Q     + ++Q  
Sbjct: 3   HHKKRVYPQAQLQYGQNATPLQQPAQFMPPQDPAAAGMSYGQMGMPPQGAVPSMGQQQFL 62

Query: 314 APNYAGNVTTTHVQPEQPVYMISAPTAAPGTTTVYHHHVQPGSAQPQMIRQVAGQSGQQY 373
            P           +        +  +                  QPQ+  Q+     QQ 
Sbjct: 63  TPAQ---------EQLHQQIDQATTSMNDMHLHNVPLVDPNAYMQPQVPVQMGTPLQQQQ 113

Query: 374 YQNMQRMAPGPGPGPDVYREQPVYNMVVPPQQTQAPPPMSAPPPSLPQMGVVRP 427
                     P         +P+  +      T+ PPP++      P + +   
Sbjct: 114 QPMAAPAYGQPSAAMG-QNMRPMNQLYPIDLLTELPPPITDLTLPPPPLVIPPE 166
>1m2v_B SEC24, protein transport protein SEC24, SEC24P, SEC24 protein, abnormal nuclear; zinc-finger, beta barrel, VWA domain, gelsolin domain,; 2.75A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1 Length = 926 Back     alignment and structure
>1m2v_B SEC24, protein transport protein SEC24, SEC24P, SEC24 protein, abnormal nuclear; zinc-finger, beta barrel, VWA domain, gelsolin domain,; 2.75A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1 Length = 926 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query506
2cu1_A103 Mitogen-activated protein kinase kinase kinase 2; 99.46
1vd2_A89 Protein kinase C, IOTA type; PB1 domain, OPCA moti 98.69
1q1o_A98 Cell division control protein 24; PB1 domain, PCCR 97.83
2jrh_A94 Mitogen-activated protein kinase kinase kinase 3; 97.81
1pqs_A77 Cell division control protein 24; alpha and beta p 97.75
2npt_B100 Mitogen-activated protein kinase kinase kinase 2; 97.71
2kkc_A102 Sequestosome-1; P62, PB1, autophagy, ubiquitin-pro 97.71
2c60_A111 Human mitogen-activated protein kinase kinase kina 97.7
2ktr_A117 Sequestosome-1; autophagy, NF-KB signaling, HOMO-o 97.4
2bkf_A87 Zinc-finger protein NBR1 (NEXT to breast cancer 1; 97.34
1oey_A83 P67-PHOX, neutrophil cytosol factor 2; immune syst 97.33
1wmh_B86 Partitioning defective-6 homolog alpha; kinase, PB 97.04
1wj6_A101 KIAA0049 protein, RSGI RUH-024; PB1 domain, protei 97.0
3iot_A449 Maltose-binding protein, huntingtin fusion protei; 96.61
3iot_A449 Maltose-binding protein, huntingtin fusion protei; 96.47
1oey_J107 P40-PHOX, neutrophil cytosol factor 4; immune syst 96.35
1ip9_A85 BEM1 protein; ubiquitin alpha/beta roll, signaling 95.81
2npt_A106 Dual specificity mitogen-activated protein kinase; 83.37
>2cu1_A Mitogen-activated protein kinase kinase kinase 2; PB1 domain, MAPK/ERK kinase kinase 2, MEK kinase 2, MEKK 2, signaling protein; NMR {Homo sapiens} SCOP: d.15.2.2 Back     alignment and structure
Probab=99.46  E-value=3.1e-13  Score=116.48  Aligned_cols=75  Identities=25%  Similarity=0.458  Sum_probs=66.5

Q ss_pred             ecCceeEEEecCCCChHHHHHHHHhHhCCCceEEEEeCCCCCcCceeeccCchHHHHHHHHHHHhhhcCCCCCeEEEEEe
Q 039741           63 IGGETKILAADRAIKFASMISKLAALCGDNDVSFKYQLPGEDLDALISVTNDDDLEHMMNEYDRLYRASAKPARMRLFLF  142 (506)
Q Consensus        63 VGGETRIVsV~RsiSF~eL~~KLs~l~g~~dvsLKYQLPgEDLDaLISVssDEDL~nMmeEYDRl~r~s~~p~RLRvFLF  142 (506)
                      .+||+|||.++|.|+|.||..|+.++||.. +.|.|+    +++.||+++|+|||++.||+|||..    ...-|||||.
T Consensus        15 ~~GEkRIi~f~RPv~f~eL~~Kv~~~fGq~-ldL~y~----n~EllIpl~sQeDLDkaIellDrss----~~kSLrIlL~   85 (103)
T 2cu1_A           15 HRGEKRILQFPRPVKLEDLRSKAKIAFGQS-MDLHYT----NNELVIPLTTQDDLDKAVELLDRSI----HMKSLKILLV   85 (103)
T ss_dssp             ETTEEEEEEEESSCCHHHHHHHHHHHHSSC-EEEEEC----SSSSCEECCSHHHHHHHHHHHHHCS----SCCSEEEEEE
T ss_pred             ecCeEEEEeccCCccHHHHHHHHHHHhCCe-eeEEEe----cceEEEeccCHHHHHHHHHHHccCC----cccceEEEEe
Confidence            378999999999999999999999999986 999999    7899999999999999999999852    2335889998


Q ss_pred             cCCC
Q 039741          143 PAGT  146 (506)
Q Consensus       143 p~~~  146 (506)
                      +.+.
T Consensus        86 ~~~~   89 (103)
T 2cu1_A           86 INGS   89 (103)
T ss_dssp             ECCC
T ss_pred             cCCC
Confidence            7764
>1vd2_A Protein kinase C, IOTA type; PB1 domain, OPCA motif, APKC, ZIP/P62, MEK5, molecular recognition, transferase; NMR {Homo sapiens} SCOP: d.15.2.2 PDB: 1wmh_A Back     alignment and structure
>1q1o_A Cell division control protein 24; PB1 domain, PCCR, PC motif, OPCA motif, yeast, cell polarity, protein-protein interaction; NMR {Saccharomyces cerevisiae} SCOP: d.15.2.2 PDB: 2kfj_A 2kfk_B Back     alignment and structure
>2jrh_A Mitogen-activated protein kinase kinase kinase 3; kinase signaling domain, transferase; NMR {Homo sapiens} PDB: 2pph_A Back     alignment and structure
>1pqs_A Cell division control protein 24; alpha and beta protein, cell cycle; NMR {Saccharomyces cerevisiae} SCOP: d.15.2.2 PDB: 1tz1_A Back     alignment and structure
>2npt_B Mitogen-activated protein kinase kinase kinase 2; MAP2K5, MEK5, MKK PRKMK5, MAP kinase kinase 5, PHOX, PHOX-domain; 1.75A {Homo sapiens} SCOP: d.15.2.2 Back     alignment and structure
>2kkc_A Sequestosome-1; P62, PB1, autophagy, ubiquitin-proteasome system, NF-KB signaling, alternative splicing, apoptosis, cytoplasm, differentiation; NMR {Rattus norvegicus} PDB: 2ktr_B Back     alignment and structure
>2c60_A Human mitogen-activated protein kinase kinase kinase 3 isoform 2; MAP3K3, MAP/ERK kinase kinase 3, MAPKKK3, MEKK3, serine threonine phosphorylation; HET: MSE; 1.25A {Homo sapiens} SCOP: d.15.2.2 PDB: 2o2v_B Back     alignment and structure
>2ktr_A Sequestosome-1; autophagy, NF-KB signaling, HOMO-oligomer, PB1 dimer, signaling protein, transport protein; NMR {Rattus norvegicus} Back     alignment and structure
>2bkf_A Zinc-finger protein NBR1 (NEXT to breast cancer 1; PB1 domain, interaction domain, Z finger; 1.56A {Homo sapiens} SCOP: d.15.2.2 PDB: 2g4s_A Back     alignment and structure
>1oey_A P67-PHOX, neutrophil cytosol factor 2; immune system, PB1 heterodimer/complex, NADPH oxidase, PB1 D heterodimerization; 2.0A {Homo sapiens} SCOP: d.15.2.2 Back     alignment and structure
>1wmh_B Partitioning defective-6 homolog alpha; kinase, PB1 domain, OPCA motif, APKC, cell polarity, transferase/cell cycle complex; 1.50A {Homo sapiens} SCOP: d.15.2.2 Back     alignment and structure
>1wj6_A KIAA0049 protein, RSGI RUH-024; PB1 domain, protein binding, structural genomics, riken structural genomics/proteomics initiative; NMR {Homo sapiens} SCOP: d.15.2.2 Back     alignment and structure
>3iot_A Maltose-binding protein, huntingtin fusion protei; HTT-EX1, HD, sugar transport, transport, apoptos disease mutation, nucleus; 3.50A {Escherichia coli k-12} PDB: 3io6_A 3io4_A 3ior_A 3iou_A 3iov_A 3iow_A Back     alignment and structure
>3iot_A Maltose-binding protein, huntingtin fusion protei; HTT-EX1, HD, sugar transport, transport, apoptos disease mutation, nucleus; 3.50A {Escherichia coli k-12} PDB: 3io6_A 3io4_A 3ior_A 3iou_A 3iov_A 3iow_A Back     alignment and structure
>1oey_J P40-PHOX, neutrophil cytosol factor 4; immune system, PB1 heterodimer/complex, NADPH oxidase, PB1 D heterodimerization; 2.0A {Homo sapiens} SCOP: d.15.2.2 Back     alignment and structure
>1ip9_A BEM1 protein; ubiquitin alpha/beta roll, signaling protein; NMR {Saccharomyces cerevisiae} SCOP: d.15.2.2 PDB: 1ipg_A 2kfk_A Back     alignment and structure
>2npt_A Dual specificity mitogen-activated protein kinase; MAP2K5, MEK5, MKK PRKMK5, MAP kinase kinase 5, PHOX, PHOX-domain; 1.75A {Homo sapiens} SCOP: d.15.2.2 PDB: 2o2v_A 1wi0_A Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query506
d1ip9a_85 Bud emergence mediator Bemp1 {Baker's yeast (Sacch 98.71
d2bkfa185 Next to BRCA1 gene 1 protein, NBR1 (KIAA0049) {Hum 98.17
d2c60a180 Mitogen-activated protein kinase kinase kinase 3, 97.8
d2nptb182 Mitogen-activated protein kinase kinase kinase 2, 97.71
d1oeyj_105 Neutrophil cytosol factor 4 (p40phox component of 96.32
d1pqsa_77 Cell division control protein 24, CDC24, C-termina 94.28
d1wmha_83 Protein kinase C, iota type {Human (Homo sapiens) 94.13
d1oeya_82 Neutrophil cytosol factor 2 (p67phox component of 93.92
d2npta1105 Mitogen activated protein kinase kinase 5, Map2k5 93.06
>d1ip9a_ d.15.2.2 (A:) Bud emergence mediator Bemp1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: CAD & PB1 domains
family: PB1 domain
domain: Bud emergence mediator Bemp1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.71  E-value=5.9e-09  Score=83.61  Aligned_cols=68  Identities=12%  Similarity=0.154  Sum_probs=58.1

Q ss_pred             CCeEEEEeecCCEeecCCCCCCeeeecCceeEEEecCCCChHHHHHHHHhHhCCCceEEEEeCCCCCcCceeeccCchHH
Q 039741           38 AYKAKFMCSYGGKIHPRPHDNQLAYIGGETKILAADRAIKFASMISKLAALCGDNDVSFKYQLPGEDLDALISVTNDDDL  117 (506)
Q Consensus        38 ~~KVKlmCSyGGrIlPRP~DGkLrYVGGETRIVsV~RsiSF~eL~~KLs~l~g~~dvsLKYQLPgEDLDaLISVssDEDL  117 (506)
                      ..+||+-+.|+                +|+|++.|+.+++|.+|+.|+.+.++...+.|||.  +|| +.+|+++||+||
T Consensus        10 ~~~ikVKv~~~----------------~D~~~~~l~~~it~~dL~~kI~~rf~~~~~~lkY~--Ded-gd~v~i~sD~Dl   70 (85)
T d1ip9a_          10 LKTTKIKFYYK----------------DDIFALMLKGDTTYKELRSKIAPRIDTDNFKLQTK--LFD-GSGEEIKTDSQV   70 (85)
T ss_dssp             CCCEEEEECBT----------------TCCEEEEECSCCCHHHHHHHHHHHHTSSCEEEEEC--CSS-SCCSCCCSHHHH
T ss_pred             CCCEEEEEEEC----------------CcEEEEEeCCCCCHHHHHHHHHHHhCCCceEEEEE--cCC-CCEEEEeCHHHH
Confidence            45677777664                57899999999999999999999998778999999  555 678999999999


Q ss_pred             HHHHHHH
Q 039741          118 EHMMNEY  124 (506)
Q Consensus       118 ~nMmeEY  124 (506)
                      +++|++.
T Consensus        71 ~~ai~~~   77 (85)
T d1ip9a_          71 SNIIQAK   77 (85)
T ss_dssp             HHHHHTT
T ss_pred             HHHHHhc
Confidence            9999744
>d2bkfa1 d.15.2.2 (A:1-85) Next to BRCA1 gene 1 protein, NBR1 (KIAA0049) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2c60a1 d.15.2.2 (A:43-122) Mitogen-activated protein kinase kinase kinase 3, MEKK 3 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2nptb1 d.15.2.2 (B:42-123) Mitogen-activated protein kinase kinase kinase 2, MEKK 2 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1oeyj_ d.15.2.2 (J:) Neutrophil cytosol factor 4 (p40phox component of NADPH oxidase) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1pqsa_ d.15.2.2 (A:) Cell division control protein 24, CDC24, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1wmha_ d.15.2.2 (A:) Protein kinase C, iota type {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1oeya_ d.15.2.2 (A:) Neutrophil cytosol factor 2 (p67phox component of NADPH oxidase) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2npta1 d.15.2.2 (A:4-108) Mitogen activated protein kinase kinase 5, Map2k5 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure