Citrus Sinensis ID: 039754

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------
Protein Sequence
MRSMLRRGKYWGPCQATNPVDRCWRCWKDWANYRPKLADCVPGFGHKITGGQKGPIYIVTDSSDNDFINSKPGTLCHAVIQNGPLWIIFARDMHIKLSQELIMTNDKTIDARGADVHIAYGAGIMIQHVKNVILHGHSIHYIFPASA
Secondary Structure (PSIPRED)
cccccccccccccccccccccccccccccccccHHccccccccccccccccccccEEEEcccccccccccccccHHHHHHHcccEEEEEEEcEEEEEccEEEEcccccccccccEEEEEccccEEEEEEcEEEEEccEEEEEEEccc
Secondary Structure Prediction (SSPRO)
cccHHHHHcccccccccccccccccccccHHHHHHHHHHHHHccccccccccccEEEEEEccccccccccccccEEEEEEEcccEEEEEcccEEEEEccEEEEEccccEccccEEEEEEcccEEEEEEEEEEEEEcEEEEccccccc
Coil and Loop (DISEMBL)
mrsmlrrgkywgpcqatnpvdrcwrcwkdwanyrpkladcvpgfghkitggqkgpiyivtdssdndfinskpgtlcHAVIQNGPLWIIFARDMHIKLSQELIMtndktidargaDVHIAYGAGIMIQHVKNVILHghsihyifpasa
Flexible Loop (DISEMBL)
mrsmlrrgkywgpcqatnpvdrcwRCWKDWANYRPKLADCVPGFGhkitggqkgPIYIVTDSSDNDFINSKPGTLCHAVIQNGPLWIIFARDMHIKLSQELIMTNDKTIDARGADVHIAYGAGIMIQHVKNVILHGHSIHYIFPASA
Low Complexity Region (SEG)
MRSMLRRGKYWGPCQATNPVDRCWRCWKDWANYRPKLADCVPGFGHKITGGQKGPIYIVTDSSDNDFINSKPGTLCHAVIQNGPLWIIFARDMHIKLSQELIMTNDKTIDARGADVHIAYGAGIMIQHVKNVILHGHSIHYIFPASA
Disordered region (IsUnstruct)
*******GKYWGPCQATNPVDRCWRCWKDWANYRPKLADCVPGFGHKITGGQKGPIYIVTDSSDNDFINSKPGTLCHAVIQNGPLWIIFARDMHIKLSQELIMTNDKTIDARGADVHIAYGAGIMIQHVKNVILHGHSIHYIF****
Disordered Region (DISOPRED)
*************CQATNPVDRCWRCWKDWANYRPKLADCVPGFGHKITGGQKGPIYIVTDSSDNDFINSKPGTLCHAVIQNGPLWIIFARDMHIKLSQELIMTNDKTIDARGADVHIAYGAGIMIQHVKNVILHGHSIHYI*P***
Disordered Region (DISEMBL)
MRSMLRRGKYWGPCQATNPVDRCWRCWKDWANYRPKLADCVPGFGHKITGGQKGPIYIVTDSSDNDFINSKPGTLCHAVIQNGPLWIIFARDMHIKLSQELIMTNDKTIDARGADVHIAYGAGIMIQHVKNVILHGHSIHYIFPASA
Disordered Region (DISPRO)
*****R**KYWGPCQATNPVDRCWRCWKDWANYRPKLADCVPGFGHKITGGQKGPIYIVTDSSDNDFINSKPGTLCHAVIQNGPLWIIFARDMHIKLSQELIMTNDKTIDARGADVHIAYGAGIMIQHVKNVILHGHSIHYIF****
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooo
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MRSMLRRGKYWGPCQATNPVDRCWRCWKDWANYRPKLADCVPGFGHKITGGQKGPIYIVTDSSDNDFINSKPGTLCHAVIQNGPLWIIFARDMHIKLSQELIMTNDKTIDARGADVHIAYGAGIMIQHVKNVILHGHSIHYIFPASA
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	147	2.2.26 [Sep-21-2011]
Q9SRH4	475	Probable pectate lyase 7	yes	no	0.945	0.292	0.604	1e-47
Q9M9S2	459	Probable pectate lyase 3	no	no	1.0	0.320	0.591	3e-46
P15722	449	Probable pectate lyase P5	N/A	no	0.986	0.322	0.589	5e-44
Q9LFP5	472	Probable pectate lyase 19	no	no	0.843	0.262	0.629	4e-43
P40972	397	Pectate lyase OS=Nicotian	N/A	no	0.979	0.362	0.548	9e-42
O64510	455	Probable pectate lyase 6	no	no	0.938	0.303	0.574	7e-41
P15721	398	Probable pectate lyase P5	N/A	no	0.945	0.349	0.568	7e-41
Q9FXD8	408	Probable pectate lyase 5	no	no	0.863	0.311	0.622	4e-40
Q944R1	470	Probable pectate lyase 15	no	no	0.945	0.295	0.568	1e-39
Q9LRM5	452	Probable pectate lyase 9	no	no	0.918	0.298	0.6	5e-39

>sp|Q9SRH4|PLY7_ARATH Probable pectate lyase 7 OS=Arabidopsis thaliana GN=At3g01270 PE=2 SV=1

 Score =  188 bits (477), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 84/139 (60%), Positives = 108/139 (77%)

Query: 9   KYWGPCQATNPVDRCWRCWKDWANYRPKLADCVPGFGHKITGGQKGPIYIVTDSSDNDFI 68
           K  GPC A+NP+D+CWRC  DWA  R KL  CV GFG++ TGG++G IY+VT   D+D +
Sbjct: 116 KLTGPCTASNPIDKCWRCQPDWARRRKKLVHCVRGFGYRTTGGKRGRIYVVTSPRDDDMV 175

Query: 69  NSKPGTLCHAVIQNGPLWIIFARDMHIKLSQELIMTNDKTIDARGADVHIAYGAGIMIQH 128
           N +PGTL HAVIQ  PLWI+F  DM I+LSQEL++T+DKTIDARGA+VHIAYGAGI +Q+
Sbjct: 176 NPRPGTLRHAVIQKEPLWIVFKHDMSIRLSQELMITSDKTIDARGANVHIAYGAGITMQY 235

Query: 129 VKNVILHGHSIHYIFPASA 147
           V N+I+HG  +H+I  +S 
Sbjct: 236 VHNIIIHGLHVHHIVKSSG 254

Arabidopsis thaliana (taxid: 3702)
EC: 4EC: .EC: 2EC: .EC: 2EC: .EC: 2

>sp|Q9M9S2|PLY3_ARATH Probable pectate lyase 3 OS=Arabidopsis thaliana GN=AT59 PE=2 SV=1

 Score =  183 bits (464), Expect = 3e-46,   Method: Compositional matrix adjust.
 Identities = 87/147 (59%), Positives = 108/147 (73%)

Query: 1   MRSMLRRGKYWGPCQATNPVDRCWRCWKDWANYRPKLADCVPGFGHKITGGQKGPIYIVT 60
           +RS  +  K  G C A NP+D CWRC ++WAN R KLADCV GFG + TGG+ GPIY+V 
Sbjct: 88  VRSGRKTHKSSGKCLAYNPIDNCWRCDRNWANNRKKLADCVLGFGRRTTGGKDGPIYVVK 147

Query: 61  DSSDNDFINSKPGTLCHAVIQNGPLWIIFARDMHIKLSQELIMTNDKTIDARGADVHIAY 120
           D+SDND IN KPGTL HAV ++GPLWIIFAR M IKL QEL++T+DKTID RGA V+I  
Sbjct: 148 DASDNDLINPKPGTLRHAVTRDGPLWIIFARSMIIKLQQELMITSDKTIDGRGARVYIME 207

Query: 121 GAGIMIQHVKNVILHGHSIHYIFPASA 147
           GAG+ +Q V NVI+H   + +I P + 
Sbjct: 208 GAGLTLQFVNNVIIHNIYVKHIVPGNG 234

Arabidopsis thaliana (taxid: 3702)

EC: 4

EC: .

EC: 2

EC: .

EC: 2

EC: .

EC: 2

>sp|P15722|PLY59_SOLLC Probable pectate lyase P59 OS=Solanum lycopersicum GN=LAT59 PE=2 SV=1

 Score =  176 bits (446), Expect = 5e-44,   Method: Compositional matrix adjust.
 Identities = 86/146 (58%), Positives = 105/146 (71%), Gaps = 1/146 (0%)

Query: 2   RSMLRRGKYWGPCQATNPVDRCWRCWKDWANYRPKLADCVPGFGHKITGGQKGPIYIVTD 61
           R  L   KY GPC  TNP+D+CWRC  +WA+ R KLADC  GFG K  GG+ G  Y+VTD
Sbjct: 84  RRGLGTKKYTGPCMVTNPIDKCWRCDPNWADNRKKLADCAMGFGSKAIGGKDGEFYVVTD 143

Query: 62  SSDNDFINSKPGTLCHAVIQNGPLWIIFARDMHIKLSQELIMTNDKTIDARGADVHIAYG 121
           +SD D+ + KPGTL HAVIQ  PLWIIF R M+I+L QE+IM +DKTIDARG +VHI  G
Sbjct: 144 NSD-DYNDPKPGTLRHAVIQKEPLWIIFKRGMNIRLHQEMIMQSDKTIDARGVNVHITKG 202

Query: 122 AGIMIQHVKNVILHGHSIHYIFPASA 147
           AGI +Q++KNVI+HG  IH I   + 
Sbjct: 203 AGITLQYIKNVIIHGLHIHDIVEGNG 228

Might be needed during pollen development and tube growth.

Solanum lycopersicum (taxid: 4081)

EC: 4

EC: .

EC: 2

EC: .

EC: 2

EC: .

EC: 2

>sp|Q9LFP5|PLY19_ARATH Probable pectate lyase 19 OS=Arabidopsis thaliana GN=At5g15110 PE=2 SV=1

 Score =  172 bits (437), Expect = 4e-43,   Method: Compositional matrix adjust.
 Identities = 78/124 (62%), Positives = 96/124 (77%)

Query: 9   KYWGPCQATNPVDRCWRCWKDWANYRPKLADCVPGFGHKITGGQKGPIYIVTDSSDNDFI 68
           K  GPC A+NP+D+CWRC  DWA  R KL  CV GFGH+ TGG++G IY+VT + D D +
Sbjct: 113 KLKGPCTASNPIDKCWRCRSDWAKRRKKLTRCVRGFGHRTTGGKRGRIYVVTSNLDEDMV 172

Query: 69  NSKPGTLCHAVIQNGPLWIIFARDMHIKLSQELIMTNDKTIDARGADVHIAYGAGIMIQH 128
           N KPGTL HAVIQ  PLWIIF  DM I+L+QEL++ + KTIDARGA+VH+A+GAGI +Q 
Sbjct: 173 NPKPGTLRHAVIQKEPLWIIFKNDMSIRLNQELLINSHKTIDARGANVHVAHGAGITMQF 232

Query: 129 VKNV 132
           VKNV
Sbjct: 233 VKNV 236

Arabidopsis thaliana (taxid: 3702)

EC: 4

EC: .

EC: 2

EC: .

EC: 2

EC: .

EC: 2

>sp|P40972|PLY_TOBAC Pectate lyase OS=Nicotiana tabacum PE=2 SV=1

 Score =  168 bits (426), Expect = 9e-42,   Method: Compositional matrix adjust.
 Identities = 79/144 (54%), Positives = 100/144 (69%)

Query: 2   RSMLRRGKYWGPCQATNPVDRCWRCWKDWANYRPKLADCVPGFGHKITGGQKGPIYIVTD 61
           R  L   KY GPC+A N +D+CWRC  +WA  R K+ADC  GFG    GG+ G IY+VTD
Sbjct: 30  RRQLSNKKYKGPCRAENAIDKCWRCDPNWAENRQKMADCALGFGSNAIGGKLGRIYVVTD 89

Query: 62  SSDNDFINSKPGTLCHAVIQNGPLWIIFARDMHIKLSQELIMTNDKTIDARGADVHIAYG 121
           +SD+D ++ KPGTL + VIQ  PLWIIF ++M IKLS+ELI+T++KTID RG +VHI  G
Sbjct: 90  NSDDDVVDPKPGTLRYGVIQKEPLWIIFGKNMKIKLSRELIVTSNKTIDGRGFNVHIQNG 149

Query: 122 AGIMIQHVKNVILHGHSIHYIFPA 145
           AGI IQ   N+I+    IH I P 
Sbjct: 150 AGIKIQSASNIIISNLRIHNIVPT 173

Nicotiana tabacum (taxid: 4097)

EC: 4

EC: .

EC: 2

EC: .

EC: 2

EC: .

EC: 2

>sp|O64510|PLY6_ARATH Probable pectate lyase 6 OS=Arabidopsis thaliana GN=At2g02720 PE=2 SV=1

 Score =  166 bits (419), Expect = 7e-41,   Method: Compositional matrix adjust.
 Identities = 81/141 (57%), Positives = 100/141 (70%), Gaps = 3/141 (2%)

Query: 2   RSMLRRGKYWGPCQATNPVDRCWRCWKDWANYRPKLADCVPGFGHKITGGQKGPIYIVTD 61
           +   RRG   G  ++ N +D+CWR  K+W   R KLADCV GFG K TGG+ GPIY+VTD
Sbjct: 88  KKTTRRG---GRFESLNAIDKCWRGDKNWDKNRKKLADCVLGFGRKTTGGKNGPIYVVTD 144

Query: 62  SSDNDFINSKPGTLCHAVIQNGPLWIIFARDMHIKLSQELIMTNDKTIDARGADVHIAYG 121
            SDND +  KPGT+ HAV ++ PLWIIFAR M IKL QELI+TNDKTID RGA ++I  G
Sbjct: 145 PSDNDLLKPKPGTIRHAVTRDRPLWIIFARSMIIKLQQELIITNDKTIDGRGAKIYITGG 204

Query: 122 AGIMIQHVKNVILHGHSIHYI 142
           AG+ +Q V+NVI+H   I  I
Sbjct: 205 AGLTLQFVRNVIIHNIHIKQI 225

Arabidopsis thaliana (taxid: 3702)

EC: 4

EC: .

EC: 2

EC: .

EC: 2

EC: .

EC: 2

>sp|P15721|PLY56_SOLLC Probable pectate lyase P56 OS=Solanum lycopersicum GN=LAT56 PE=2 SV=2

 Score =  165 bits (418), Expect = 7e-41,   Method: Compositional matrix adjust.
 Identities = 79/139 (56%), Positives = 96/139 (69%)

Query: 9   KYWGPCQATNPVDRCWRCWKDWANYRPKLADCVPGFGHKITGGQKGPIYIVTDSSDNDFI 68
           KY GPC A N +D+CWRC   WA  R K+ADC  GFG    GG+ GP YIVTD+SD+D +
Sbjct: 38  KYRGPCMAVNSIDKCWRCDPFWAEDRQKMADCALGFGINAMGGKYGPYYIVTDNSDDDVV 97

Query: 69  NSKPGTLCHAVIQNGPLWIIFARDMHIKLSQELIMTNDKTIDARGADVHIAYGAGIMIQH 128
           + KPGTL   VIQ GPLWI FAR M I+L++ELI++++KTID RG  VHIA GAGI IQ 
Sbjct: 98  DPKPGTLRFGVIQKGPLWITFARSMRIRLTRELIVSSNKTIDGRGKYVHIANGAGIKIQS 157

Query: 129 VKNVILHGHSIHYIFPASA 147
             NVI+    IH I P + 
Sbjct: 158 ASNVIISNLRIHNIVPTAG 176

Might be needed during pollen development and tube growth.

Solanum lycopersicum (taxid: 4081)

EC: 4

EC: .

EC: 2

EC: .

EC: 2

EC: .

EC: 2

>sp|Q9FXD8|PLY5_ARATH Probable pectate lyase 5 OS=Arabidopsis thaliana GN=At1g67750 PE=2 SV=2

 Score =  163 bits (412), Expect = 4e-40,   Method: Compositional matrix adjust.
 Identities = 79/127 (62%), Positives = 92/127 (72%)

Query: 14  CQATNPVDRCWRCWKDWANYRPKLADCVPGFGHKITGGQKGPIYIVTDSSDNDFINSKPG 73
           C   NP+D CWRC   W   R +LADC  GFG    GG+ G IY+VTDSSD D +N KPG
Sbjct: 56  CGTGNPIDDCWRCDPKWEKNRQRLADCAIGFGKHAIGGRDGKIYVVTDSSDKDVVNPKPG 115

Query: 74  TLCHAVIQNGPLWIIFARDMHIKLSQELIMTNDKTIDARGADVHIAYGAGIMIQHVKNVI 133
           TL HAVIQ+ PLWIIFARDM IKL +ELIM + KTID RGA VHIA GA I +Q+V N+I
Sbjct: 116 TLRHAVIQDEPLWIIFARDMVIKLKEELIMNSFKTIDGRGASVHIAGGACITVQYVTNII 175

Query: 134 LHGHSIH 140
           +HG +IH
Sbjct: 176 IHGVNIH 182

Arabidopsis thaliana (taxid: 3702)

EC: 4

EC: .

EC: 2

EC: .

EC: 2

EC: .

EC: 2

>sp|Q944R1|PLY15_ARATH Probable pectate lyase 15 OS=Arabidopsis thaliana GN=At4g13710 PE=2 SV=1

 Score =  161 bits (407), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 79/139 (56%), Positives = 94/139 (67%)

Query: 6   RRGKYWGPCQATNPVDRCWRCWKDWANYRPKLADCVPGFGHKITGGQKGPIYIVTDSSDN 65
           RR   +  C   NP+D CWRC ++W   R +LADC  GFG    GG+ G  YIVTD +D 
Sbjct: 110 RRKLGFFSCGTGNPIDDCWRCDRNWHKNRKRLADCGIGFGRNAIGGRDGRFYIVTDPTDE 169

Query: 66  DFINSKPGTLCHAVIQNGPLWIIFARDMHIKLSQELIMTNDKTIDARGADVHIAYGAGIM 125
           D +N KPGTL HAVIQ  PLWI+F RDM I+L QELIM + KTIDARG++VHIA GA I 
Sbjct: 170 DVVNPKPGTLRHAVIQEEPLWIVFKRDMVIELKQELIMNSFKTIDARGSNVHIANGACIT 229

Query: 126 IQHVKNVILHGHSIHYIFP 144
           IQ + NVI+HG  IH   P
Sbjct: 230 IQFITNVIIHGLHIHDCKP 248

Arabidopsis thaliana (taxid: 3702)

EC: 4

EC: .

EC: 2

EC: .

EC: 2

EC: .

EC: 2

>sp|Q9LRM5|PLY9_ARATH Probable pectate lyase 9 OS=Arabidopsis thaliana GN=At3g24230 PE=2 SV=1

 Score =  159 bits (402), Expect = 5e-39,   Method: Compositional matrix adjust.
 Identities = 81/135 (60%), Positives = 94/135 (69%)

Query: 6   RRGKYWGPCQATNPVDRCWRCWKDWANYRPKLADCVPGFGHKITGGQKGPIYIVTDSSDN 65
           RR   +  C   N +D CWRC ++W   R  LADC  GFG K  GG+ G  Y+VTD SD+
Sbjct: 92  RRKLGFFSCGNGNLIDDCWRCDRNWNKNRKHLADCGMGFGSKAFGGRNGSYYVVTDHSDD 151

Query: 66  DFINSKPGTLCHAVIQNGPLWIIFARDMHIKLSQELIMTNDKTIDARGADVHIAYGAGIM 125
           D +N KPGTL HAVIQ  PLWIIF RDM IKL QELIM + KTIDARGA+VHIA GA I 
Sbjct: 152 DVVNPKPGTLRHAVIQVEPLWIIFKRDMVIKLKQELIMNSFKTIDARGANVHIANGACIT 211

Query: 126 IQHVKNVILHGHSIH 140
           IQ++ NVI+HG  IH
Sbjct: 212 IQNITNVIVHGLHIH 226

Arabidopsis thaliana (taxid: 3702)

EC: 4

EC: .

EC: 2

EC: .

EC: 2

EC: .

EC: 2

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	147
449435358	432	PREDICTED: probable pectate lyase P59-li	0.993	0.337	0.662	5e-50
449478689	432	PREDICTED: LOW QUALITY PROTEIN: probable	0.993	0.337	0.662	5e-50
359488970	439	PREDICTED: pectate lyase-like [Vitis vin	0.925	0.309	0.683	1e-48
296082858	468	unnamed protein product [Vitis vinifera]	0.925	0.290	0.683	1e-48
449505709	435	PREDICTED: probable pectate lyase P59-li	0.959	0.324	0.638	9e-48
449458113	442	PREDICTED: probable pectate lyase P59-li	0.959	0.319	0.638	1e-47
255558212	440	Pectate lyase precursor, putative [Ricin	0.986	0.329	0.630	1e-46
357486617	449	Pectate lyase [Medicago truncatula] gi|3	0.911	0.298	0.664	3e-46
147774623	358	hypothetical protein VITISV_001007 [Viti	0.979	0.402	0.643	5e-46
225424912	443	PREDICTED: probable pectate lyase P59 [V	0.979	0.325	0.643	6e-46

>gi|449435358|ref|XP_004135462.1| PREDICTED: probable pectate lyase P59-like [Cucumis sativus]

 Score =  202 bits (513), Expect = 5e-50,   Method: Compositional matrix adjust.
 Identities = 98/148 (66%), Positives = 116/148 (78%), Gaps = 2/148 (1%)

Query: 2   RSMLRRG--KYWGPCQATNPVDRCWRCWKDWANYRPKLADCVPGFGHKITGGQKGPIYIV 59
           R+  RR   KY GPC ATNP+DRCWRC  +WA  R KLADCV GFG K TGG+ GP Y+V
Sbjct: 65  RNSTRRNLKKYAGPCLATNPIDRCWRCDPNWAQNRKKLADCVLGFGRKTTGGKLGPYYVV 124

Query: 60  TDSSDNDFINSKPGTLCHAVIQNGPLWIIFARDMHIKLSQELIMTNDKTIDARGADVHIA 119
            DSSD+D +N KPGTL HAVIQ GPLWIIF+ +M I+LSQELIMT+DKTIDARGA+V IA
Sbjct: 125 NDSSDSDLMNPKPGTLRHAVIQKGPLWIIFSTNMAIRLSQELIMTSDKTIDARGANVQIA 184

Query: 120 YGAGIMIQHVKNVILHGHSIHYIFPASA 147
           YGAGI +Q+++NVI+HG  IH+I   S 
Sbjct: 185 YGAGITLQYIRNVIIHGLRIHHIVVGSG 212

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449478689|ref|XP_004155392.1| PREDICTED: LOW QUALITY PROTEIN: probable pectate lyase P59-like [Cucumis sativus]

 Score =  202 bits (513), Expect = 5e-50,   Method: Compositional matrix adjust.
 Identities = 98/148 (66%), Positives = 116/148 (78%), Gaps = 2/148 (1%)

Query: 2   RSMLRRG--KYWGPCQATNPVDRCWRCWKDWANYRPKLADCVPGFGHKITGGQKGPIYIV 59
           R+  RR   KY GPC ATNP+DRCWRC  +WA  R KLADCV GFG K TGG+ GP Y+V
Sbjct: 65  RNSTRRNLKKYAGPCLATNPIDRCWRCDPNWAQNRKKLADCVLGFGRKTTGGKLGPYYVV 124

Query: 60  TDSSDNDFINSKPGTLCHAVIQNGPLWIIFARDMHIKLSQELIMTNDKTIDARGADVHIA 119
            DSSD+D +N KPGTL HAVIQ GPLWIIF+ +M I+LSQELIMT+DKTIDARGA+V IA
Sbjct: 125 NDSSDSDLMNPKPGTLRHAVIQKGPLWIIFSXNMAIRLSQELIMTSDKTIDARGANVQIA 184

Query: 120 YGAGIMIQHVKNVILHGHSIHYIFPASA 147
           YGAGI +Q+++NVI+HG  IH+I   S 
Sbjct: 185 YGAGITLQYIRNVIIHGLRIHHIVVGSG 212

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359488970|ref|XP_002282500.2| PREDICTED: pectate lyase-like [Vitis vinifera] gi|147866287|emb|CAN79927.1| hypothetical protein VITISV_042447 [Vitis vinifera]

 Score =  197 bits (501), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 93/136 (68%), Positives = 105/136 (77%)

Query: 12  GPCQATNPVDRCWRCWKDWANYRPKLADCVPGFGHKITGGQKGPIYIVTDSSDNDFINSK 71
           GPC ATNP+DRCWRC +DWA  R KLADCV GFG + TGG+ G  Y+VTD+SDND I+ K
Sbjct: 84  GPCMATNPIDRCWRCKQDWAKNRKKLADCVLGFGRRTTGGKDGEFYVVTDASDNDMIDPK 143

Query: 72  PGTLCHAVIQNGPLWIIFARDMHIKLSQELIMTNDKTIDARGADVHIAYGAGIMIQHVKN 131
           PGTL HAVIQ  PLWIIFARDM I+L QELIM  +KTID RGA+VHIAYG GI IQ VKN
Sbjct: 144 PGTLRHAVIQKEPLWIIFARDMIIRLKQELIMAGNKTIDGRGANVHIAYGCGITIQFVKN 203

Query: 132 VILHGHSIHYIFPASA 147
           +I+H   IH I PA  
Sbjct: 204 IIIHNLHIHDIVPAQG 219

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|296082858|emb|CBI22159.3| unnamed protein product [Vitis vinifera]

 Score =  197 bits (500), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 93/136 (68%), Positives = 105/136 (77%)

Query: 12  GPCQATNPVDRCWRCWKDWANYRPKLADCVPGFGHKITGGQKGPIYIVTDSSDNDFINSK 71
           GPC ATNP+DRCWRC +DWA  R KLADCV GFG + TGG+ G  Y+VTD+SDND I+ K
Sbjct: 113 GPCMATNPIDRCWRCKQDWAKNRKKLADCVLGFGRRTTGGKDGEFYVVTDASDNDMIDPK 172

Query: 72  PGTLCHAVIQNGPLWIIFARDMHIKLSQELIMTNDKTIDARGADVHIAYGAGIMIQHVKN 131
           PGTL HAVIQ  PLWIIFARDM I+L QELIM  +KTID RGA+VHIAYG GI IQ VKN
Sbjct: 173 PGTLRHAVIQKEPLWIIFARDMIIRLKQELIMAGNKTIDGRGANVHIAYGCGITIQFVKN 232

Query: 132 VILHGHSIHYIFPASA 147
           +I+H   IH I PA  
Sbjct: 233 IIIHNLHIHDIVPAQG 248

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449505709|ref|XP_004162547.1| PREDICTED: probable pectate lyase P59-like [Cucumis sativus]

 Score =  194 bits (493), Expect = 9e-48,   Method: Compositional matrix adjust.
 Identities = 90/141 (63%), Positives = 110/141 (78%)

Query: 7   RGKYWGPCQATNPVDRCWRCWKDWANYRPKLADCVPGFGHKITGGQKGPIYIVTDSSDND 66
           R KY GPC ATNP+DRCWRC ++WA  R KLA+C  GFGH+  GG++GPIY+VTD+SD+D
Sbjct: 73  RKKYRGPCLATNPIDRCWRCDRNWAKNRRKLAECPLGFGHQTIGGKRGPIYVVTDASDDD 132

Query: 67  FINSKPGTLCHAVIQNGPLWIIFARDMHIKLSQELIMTNDKTIDARGADVHIAYGAGIMI 126
            +N KPGTL H VIQ GPLWIIF R M I+LSQEL++++ KTIDARGA+VHIA+GAG+ I
Sbjct: 133 LVNPKPGTLRHGVIQKGPLWIIFGRSMVIRLSQELMISSHKTIDARGANVHIAFGAGLTI 192

Query: 127 QHVKNVILHGHSIHYIFPASA 147
           Q V NVI+H   IH I   S 
Sbjct: 193 QFVNNVIIHNLHIHDIVSKSG 213

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449458113|ref|XP_004146792.1| PREDICTED: probable pectate lyase P59-like, partial [Cucumis sativus]

 Score =  194 bits (492), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 90/141 (63%), Positives = 110/141 (78%)

Query: 7   RGKYWGPCQATNPVDRCWRCWKDWANYRPKLADCVPGFGHKITGGQKGPIYIVTDSSDND 66
           R KY GPC ATNP+DRCWRC ++WA  R KLA+C  GFGH+  GG++GPIY+VTD+SD+D
Sbjct: 80  RKKYRGPCLATNPIDRCWRCDRNWAKNRRKLAECPLGFGHQTIGGKRGPIYVVTDASDDD 139

Query: 67  FINSKPGTLCHAVIQNGPLWIIFARDMHIKLSQELIMTNDKTIDARGADVHIAYGAGIMI 126
            +N KPGTL H VIQ GPLWIIF R M I+LSQEL++++ KTIDARGA+VHIA+GAG+ I
Sbjct: 140 LVNPKPGTLRHGVIQKGPLWIIFGRSMVIRLSQELMISSHKTIDARGANVHIAFGAGLTI 199

Query: 127 QHVKNVILHGHSIHYIFPASA 147
           Q V NVI+H   IH I   S 
Sbjct: 200 QFVNNVIIHNLHIHDIVSKSG 220

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255558212|ref|XP_002520133.1| Pectate lyase precursor, putative [Ricinus communis] gi|223540625|gb|EEF42188.1| Pectate lyase precursor, putative [Ricinus communis]

 Score =  190 bits (483), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 92/146 (63%), Positives = 113/146 (77%), Gaps = 1/146 (0%)

Query: 2   RSMLRRGKYWGPCQATNPVDRCWRCWKDWANYRPKLADCVPGFGHKITGGQKGPIYIVTD 61
           R+++RR K  GPC+ATNP+DRCWRC   WA  R +L +CV GFGH  TGG+ G  YIVTD
Sbjct: 77  RNLMRR-KGGGPCKATNPIDRCWRCDPKWALNRKRLVECVLGFGHSTTGGKDGKFYIVTD 135

Query: 62  SSDNDFINSKPGTLCHAVIQNGPLWIIFARDMHIKLSQELIMTNDKTIDARGADVHIAYG 121
            SDND +N KPGTL HAVIQN PLWIIFAR M I+L+QEL+++++KTIDARGA+VHIA G
Sbjct: 136 PSDNDMVNPKPGTLRHAVIQNEPLWIIFARSMIIRLNQELMISSNKTIDARGANVHIAGG 195

Query: 122 AGIMIQHVKNVILHGHSIHYIFPASA 147
           AG+ +Q V+NVI+HG  IH I   S 
Sbjct: 196 AGLTLQFVQNVIIHGIRIHDIVSGSG 221

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357486617|ref|XP_003613596.1| Pectate lyase [Medicago truncatula] gi|355514931|gb|AES96554.1| Pectate lyase [Medicago truncatula]

 Score =  189 bits (481), Expect = 3e-46,   Method: Compositional matrix adjust.
 Identities = 89/134 (66%), Positives = 104/134 (77%)

Query: 14  CQATNPVDRCWRCWKDWANYRPKLADCVPGFGHKITGGQKGPIYIVTDSSDNDFINSKPG 73
           C ATNP+DRCWRC  +WAN R KLADCV GFG K TGG+ GPIY+VTD SD+D +N +PG
Sbjct: 96  CMATNPIDRCWRCDPNWANNRKKLADCVQGFGRKTTGGKDGPIYVVTDPSDSDLVNPRPG 155

Query: 74  TLCHAVIQNGPLWIIFARDMHIKLSQELIMTNDKTIDARGADVHIAYGAGIMIQHVKNVI 133
           TL HAV +NGPLWIIFAR M I+L+QELIM  +KTID RGADV IA GAGI IQ ++NVI
Sbjct: 156 TLRHAVTRNGPLWIIFARSMKIRLNQELIMAGNKTIDGRGADVTIANGAGITIQFIENVI 215

Query: 134 LHGHSIHYIFPASA 147
           +HG  I+ I   S 
Sbjct: 216 IHGIKIYDIMVGSG 229

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147774623|emb|CAN69905.1| hypothetical protein VITISV_001007 [Vitis vinifera]

 Score =  189 bits (479), Expect = 5e-46,   Method: Compositional matrix adjust.
 Identities = 94/146 (64%), Positives = 107/146 (73%), Gaps = 2/146 (1%)

Query: 2   RSMLRRGKYWGPCQATNPVDRCWRCWKDWANYRPKLADCVPGFGHKITGGQKGPIYIVTD 61
           R  LR  K  GPC+ATNP+DRCWRC  +WA+ R +LADCV GFG    GG+ G  Y VTD
Sbjct: 76  RRSLRVNK--GPCKATNPIDRCWRCRPNWASQRKRLADCVLGFGRNTVGGKYGKYYFVTD 133

Query: 62  SSDNDFINSKPGTLCHAVIQNGPLWIIFARDMHIKLSQELIMTNDKTIDARGADVHIAYG 121
            SDND +N K GTL HAVIQ  PLWI+FAR M I+L+QELIMT+DKTID RG +VHIAYG
Sbjct: 134 PSDNDMVNPKKGTLRHAVIQPRPLWIVFARSMIIRLNQELIMTSDKTIDGRGVNVHIAYG 193

Query: 122 AGIMIQHVKNVILHGHSIHYIFPASA 147
           AGI IQ VKNVI+HG  IH I   S 
Sbjct: 194 AGITIQFVKNVIIHGLHIHDIVSGSG 219

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225424912|ref|XP_002270089.1| PREDICTED: probable pectate lyase P59 [Vitis vinifera] gi|296086426|emb|CBI32015.3| unnamed protein product [Vitis vinifera]

 Score =  188 bits (477), Expect = 6e-46,   Method: Compositional matrix adjust.
 Identities = 94/146 (64%), Positives = 107/146 (73%), Gaps = 2/146 (1%)

Query: 2   RSMLRRGKYWGPCQATNPVDRCWRCWKDWANYRPKLADCVPGFGHKITGGQKGPIYIVTD 61
           R  LR  K  GPC+ATNP+DRCWRC  +WA+ R +LADCV GFG    GG+ G  Y VTD
Sbjct: 76  RRSLRVNK--GPCKATNPIDRCWRCRPNWASQRKRLADCVLGFGRNTVGGKYGKYYFVTD 133

Query: 62  SSDNDFINSKPGTLCHAVIQNGPLWIIFARDMHIKLSQELIMTNDKTIDARGADVHIAYG 121
            SDND +N K GTL HAVIQ  PLWI+FAR M I+L+QELIMT+DKTID RG +VHIAYG
Sbjct: 134 PSDNDMVNPKKGTLRHAVIQPRPLWIVFARSMIIRLNQELIMTSDKTIDGRGVNVHIAYG 193

Query: 122 AGIMIQHVKNVILHGHSIHYIFPASA 147
           AGI IQ VKNVI+HG  IH I   S 
Sbjct: 194 AGITIQFVKNVIIHGLHIHDIVSGSG 219

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	147
TAIR|locus:2100247	475	AT3G01270 [Arabidopsis thalian	0.938	0.290	0.608	3.8e-46
TAIR|locus:2012562	459	AT59 [Arabidopsis thaliana (ta	0.993	0.318	0.595	3.9e-44
TAIR|locus:2008550	408	AT1G67750 [Arabidopsis thalian	0.863	0.311	0.622	2.3e-39
TAIR|locus:2058842	455	AT2G02720 [Arabidopsis thalian	0.884	0.285	0.6	2.9e-39
TAIR|locus:2005487	470	AT4G13710 [Arabidopsis thalian	0.863	0.270	0.598	1.9e-37
TAIR|locus:2093761	452	AT3G24230 [Arabidopsis thalian	0.863	0.280	0.622	2.4e-37
TAIR|locus:2161992	432	AT5G63180 [Arabidopsis thalian	0.938	0.319	0.543	2.7e-36
TAIR|locus:2121914	408	AT4G24780 [Arabidopsis thalian	0.863	0.311	0.559	9.2e-36
TAIR|locus:2077622	416	AT3G07010 [Arabidopsis thalian	0.911	0.322	0.555	1.2e-35
TAIR|locus:2093131	440	AT3G24670 [Arabidopsis thalian	0.863	0.288	0.559	1.5e-35

TAIR|locus:2100247 AT3G01270 [Arabidopsis thaliana (taxid:3702)]

 Score = 484 (175.4 bits), Expect = 3.8e-46, P = 3.8e-46
 Identities = 84/138 (60%), Positives = 108/138 (78%)

Query:     9 KYWGPCQATNPVDRCWRCWKDWANYRPKLADCVPGFGHKITGGQKGPIYIVTDSSDNDFI 68
             K  GPC A+NP+D+CWRC  DWA  R KL  CV GFG++ TGG++G IY+VT   D+D +
Sbjct:   116 KLTGPCTASNPIDKCWRCQPDWARRRKKLVHCVRGFGYRTTGGKRGRIYVVTSPRDDDMV 175

Query:    69 NSKPGTLCHAVIQNGPLWIIFARDMHIKLSQELIMTNDKTIDARGADVHIAYGAGIMIQH 128
             N +PGTL HAVIQ  PLWI+F  DM I+LSQEL++T+DKTIDARGA+VHIAYGAGI +Q+
Sbjct:   176 NPRPGTLRHAVIQKEPLWIVFKHDMSIRLSQELMITSDKTIDARGANVHIAYGAGITMQY 235

Query:   129 VKNVILHGHSIHYIFPAS 146
             V N+I+HG  +H+I  +S
Sbjct:   236 VHNIIIHGLHVHHIVKSS 253

GO:0005886 "plasma membrane" evidence=ISM

GO:0016829 "lyase activity" evidence=ISS

GO:0030570 "pectate lyase activity" evidence=IEA;ISS

TAIR|locus:2012562 AT59 [Arabidopsis thaliana (taxid:3702)]

 Score = 465 (168.7 bits), Expect = 3.9e-44, P = 3.9e-44
 Identities = 87/146 (59%), Positives = 108/146 (73%)

Query:     1 MRSMLRRGKYWGPCQATNPVDRCWRCWKDWANYRPKLADCVPGFGHKITGGQKGPIYIVT 60
             +RS  +  K  G C A NP+D CWRC ++WAN R KLADCV GFG + TGG+ GPIY+V 
Sbjct:    88 VRSGRKTHKSSGKCLAYNPIDNCWRCDRNWANNRKKLADCVLGFGRRTTGGKDGPIYVVK 147

Query:    61 DSSDNDFINSKPGTLCHAVIQNGPLWIIFARDMHIKLSQELIMTNDKTIDARGADVHIAY 120
             D+SDND IN KPGTL HAV ++GPLWIIFAR M IKL QEL++T+DKTID RGA V+I  
Sbjct:   148 DASDNDLINPKPGTLRHAVTRDGPLWIIFARSMIIKLQQELMITSDKTIDGRGARVYIME 207

Query:   121 GAGIMIQHVKNVILHGHSIHYIFPAS 146
             GAG+ +Q V NVI+H   + +I P +
Sbjct:   208 GAGLTLQFVNNVIIHNIYVKHIVPGN 233

GO:0005576 "extracellular region" evidence=ISM

GO:0016829 "lyase activity" evidence=ISS

GO:0030570 "pectate lyase activity" evidence=IEA;ISS

GO:0009827 "plant-type cell wall modification" evidence=RCA

GO:0009664 "plant-type cell wall organization" evidence=TAS

TAIR|locus:2008550 AT1G67750 [Arabidopsis thaliana (taxid:3702)]

 Score = 420 (152.9 bits), Expect = 2.3e-39, P = 2.3e-39
 Identities = 79/127 (62%), Positives = 92/127 (72%)

Query:    14 CQATNPVDRCWRCWKDWANYRPKLADCVPGFGHKITGGQKGPIYIVTDSSDNDFINSKPG 73
             C   NP+D CWRC   W   R +LADC  GFG    GG+ G IY+VTDSSD D +N KPG
Sbjct:    56 CGTGNPIDDCWRCDPKWEKNRQRLADCAIGFGKHAIGGRDGKIYVVTDSSDKDVVNPKPG 115

Query:    74 TLCHAVIQNGPLWIIFARDMHIKLSQELIMTNDKTIDARGADVHIAYGAGIMIQHVKNVI 133
             TL HAVIQ+ PLWIIFARDM IKL +ELIM + KTID RGA VHIA GA I +Q+V N+I
Sbjct:   116 TLRHAVIQDEPLWIIFARDMVIKLKEELIMNSFKTIDGRGASVHIAGGACITVQYVTNII 175

Query:   134 LHGHSIH 140
             +HG +IH
Sbjct:   176 IHGVNIH 182

GO:0005576 "extracellular region" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0030570 "pectate lyase activity" evidence=ISS

TAIR|locus:2058842 AT2G02720 [Arabidopsis thaliana (taxid:3702)]

 Score = 419 (152.6 bits), Expect = 2.9e-39, P = 2.9e-39
 Identities = 81/135 (60%), Positives = 100/135 (74%)

Query:     6 RRGKYWGPCQATNPVDRCWRCWKDWANYRPKLADCVPGFGHKITGGQKGPIYIVTDSSDN 65
             RRG   G  ++ N +D+CWR  K+W   R KLADCV GFG K TGG+ GPIY+VTD SDN
Sbjct:    92 RRG---GRFESLNAIDKCWRGDKNWDKNRKKLADCVLGFGRKTTGGKNGPIYVVTDPSDN 148

Query:    66 DFINSKPGTLCHAVIQNGPLWIIFARDMHIKLSQELIMTNDKTIDARGADVHIAYGAGIM 125
             D +  KPGT+ HAV ++ PLWIIFAR M IKL QELI+TNDKTID RGA ++I  GAG+ 
Sbjct:   149 DLLKPKPGTIRHAVTRDRPLWIIFARSMIIKLQQELIITNDKTIDGRGAKIYITGGAGLT 208

Query:   126 IQHVKNVILHGHSIH 140
             +Q V+NVI+H  +IH
Sbjct:   209 LQFVRNVIIH--NIH 221

GO:0005886 "plasma membrane" evidence=ISM

GO:0016829 "lyase activity" evidence=ISS

GO:0030570 "pectate lyase activity" evidence=IEA;ISS

TAIR|locus:2005487 AT4G13710 [Arabidopsis thaliana (taxid:3702)]

 Score = 402 (146.6 bits), Expect = 1.9e-37, P = 1.9e-37
 Identities = 76/127 (59%), Positives = 90/127 (70%)

Query:    14 CQATNPVDRCWRCWKDWANYRPKLADCVPGFGHKITGGQKGPIYIVTDSSDNDFINSKPG 73
             C   NP+D CWRC ++W   R +LADC  GFG    GG+ G  YIVTD +D D +N KPG
Sbjct:   118 CGTGNPIDDCWRCDRNWHKNRKRLADCGIGFGRNAIGGRDGRFYIVTDPTDEDVVNPKPG 177

Query:    74 TLCHAVIQNGPLWIIFARDMHIKLSQELIMTNDKTIDARGADVHIAYGAGIMIQHVKNVI 133
             TL HAVIQ  PLWI+F RDM I+L QELIM + KTIDARG++VHIA GA I IQ + NVI
Sbjct:   178 TLRHAVIQEEPLWIVFKRDMVIELKQELIMNSFKTIDARGSNVHIANGACITIQFITNVI 237

Query:   134 LHGHSIH 140
             +HG  IH
Sbjct:   238 IHGLHIH 244

GO:0005576 "extracellular region" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0016829 "lyase activity" evidence=ISS

GO:0030570 "pectate lyase activity" evidence=ISS

TAIR|locus:2093761 AT3G24230 [Arabidopsis thaliana (taxid:3702)]

 Score = 401 (146.2 bits), Expect = 2.4e-37, P = 2.4e-37
 Identities = 79/127 (62%), Positives = 91/127 (71%)

Query:    14 CQATNPVDRCWRCWKDWANYRPKLADCVPGFGHKITGGQKGPIYIVTDSSDNDFINSKPG 73
             C   N +D CWRC ++W   R  LADC  GFG K  GG+ G  Y+VTD SD+D +N KPG
Sbjct:   100 CGNGNLIDDCWRCDRNWNKNRKHLADCGMGFGSKAFGGRNGSYYVVTDHSDDDVVNPKPG 159

Query:    74 TLCHAVIQNGPLWIIFARDMHIKLSQELIMTNDKTIDARGADVHIAYGAGIMIQHVKNVI 133
             TL HAVIQ  PLWIIF RDM IKL QELIM + KTIDARGA+VHIA GA I IQ++ NVI
Sbjct:   160 TLRHAVIQVEPLWIIFKRDMVIKLKQELIMNSFKTIDARGANVHIANGACITIQNITNVI 219

Query:   134 LHGHSIH 140
             +HG  IH
Sbjct:   220 VHGLHIH 226

GO:0005576 "extracellular region" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0016829 "lyase activity" evidence=ISS

GO:0030570 "pectate lyase activity" evidence=ISS

TAIR|locus:2161992 AT5G63180 [Arabidopsis thaliana (taxid:3702)]

 Score = 391 (142.7 bits), Expect = 2.7e-36, P = 2.7e-36
 Identities = 75/138 (54%), Positives = 96/138 (69%)

Query:     3 SMLRRGKYWGPCQATNPVDRCWRCWKDWANYRPKLADCVPGFGHKITGGQKGPIYIVTDS 62
             S+ RR   +  C + NP+D CWRC KDW   R +LADC  GFG    GG+ G IY+VTD 
Sbjct:    67 SISRRKLGFFSCGSGNPIDDCWRCDKDWEKNRKRLADCGIGFGKNAIGGRDGEIYVVTDP 126

Query:    63 SDNDFINSKPGTLCHAVIQNGPLWIIFARDMHIKLSQELIMTNDKTIDARGADVHIAYGA 122
              ++D +N +PGTL +AVIQ+ PLWIIF RDM I+L +ELIM + KT+D RGA VHI+ G 
Sbjct:   127 GNDDPVNPRPGTLRYAVIQDEPLWIIFKRDMTIQLKEELIMNSFKTLDGRGASVHISGGP 186

Query:   123 GIMIQHVKNVILHGHSIH 140
              I IQ+V N+I+HG  IH
Sbjct:   187 CITIQYVTNIIIHGLHIH 204

GO:0005576 "extracellular region" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0016829 "lyase activity" evidence=ISS

GO:0030570 "pectate lyase activity" evidence=ISS

TAIR|locus:2121914 AT4G24780 [Arabidopsis thaliana (taxid:3702)]

 Score = 386 (140.9 bits), Expect = 9.2e-36, P = 9.2e-36
 Identities = 71/127 (55%), Positives = 90/127 (70%)

Query:    14 CQATNPVDRCWRCWKDWANYRPKLADCVPGFGHKITGGQKGPIYIVTDSSDNDFINSKPG 73
             C   NP+D CWRC   W  +R +LADC  GFG    GG+ G IY+VTDS +++ ++ KPG
Sbjct:    56 CTTGNPIDDCWRCDPHWEQHRQRLADCAIGFGKNAIGGRDGRIYVVTDSGNDNPVSPKPG 115

Query:    74 TLCHAVIQNGPLWIIFARDMHIKLSQELIMTNDKTIDARGADVHIAYGAGIMIQHVKNVI 133
             TL HAV+Q+ PLWIIF RDM I+L +ELIM + KTID RGA VHI+ G  I IQ+V N+I
Sbjct:   116 TLRHAVVQDEPLWIIFQRDMTIQLKEELIMNSFKTIDGRGASVHISGGPCITIQYVTNII 175

Query:   134 LHGHSIH 140
             +HG  IH
Sbjct:   176 IHGIHIH 182

GO:0005576 "extracellular region" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0016829 "lyase activity" evidence=ISS

GO:0030570 "pectate lyase activity" evidence=ISS

GO:0016020 "membrane" evidence=IDA

GO:0006949 "syncytium formation" evidence=RCA

TAIR|locus:2077622 AT3G07010 [Arabidopsis thaliana (taxid:3702)]

 Score = 385 (140.6 bits), Expect = 1.2e-35, P = 1.2e-35
 Identities = 75/135 (55%), Positives = 91/135 (67%)

Query:     6 RRGKYWGPCQATNPVDRCWRCWKDWANYRPKLADCVPGFGHKITGGQKGPIYIVTDSSDN 65
             RR  Y+  C   NP+D CWRC + W   R +LADC  GFG    GG+ G  Y+VTD  D+
Sbjct:    57 RRLGYFS-CATGNPIDDCWRCDRKWQLRRKRLADCSIGFGRNAIGGRDGRFYVVTDPGDD 115

Query:    66 DFINSKPGTLCHAVIQNGPLWIIFARDMHIKLSQELIMTNDKTIDARGADVHIAYGAGIM 125
             D +N  PGTL HAVIQ+ PLWIIF RDM I L QELIM + KTID RG +VHIA GA + 
Sbjct:   116 DPVNPIPGTLRHAVIQDEPLWIIFKRDMVITLKQELIMNSFKTIDGRGVNVHIANGACLT 175

Query:   126 IQHVKNVILHGHSIH 140
             IQ+V N+I+HG  +H
Sbjct:   176 IQYVTNIIVHGIHVH 190

GO:0005576 "extracellular region" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0016829 "lyase activity" evidence=ISS

GO:0030570 "pectate lyase activity" evidence=ISS

TAIR|locus:2093131 AT3G24670 [Arabidopsis thaliana (taxid:3702)]

 Score = 384 (140.2 bits), Expect = 1.5e-35, P = 1.5e-35
 Identities = 71/127 (55%), Positives = 91/127 (71%)

Query:    14 CQATNPVDRCWRCWKDWANYRPKLADCVPGFGHKITGGQKGPIYIVTDSSDNDFINSKPG 73
             C   NP+D CWRC ++W   R +LA+C  GFG    GG+ G  Y+VTD SD+D +N +PG
Sbjct:    88 CATGNPIDDCWRCDRNWHLRRKRLANCAIGFGRNAIGGRDGRYYVVTDPSDHDAVNPRPG 147

Query:    74 TLCHAVIQNGPLWIIFARDMHIKLSQELIMTNDKTIDARGADVHIAYGAGIMIQHVKNVI 133
             TL HAVIQ+ PLWI+F RDM I L+QELIM + KTID RG +V IA GA I IQ+V N+I
Sbjct:   148 TLRHAVIQDRPLWIVFKRDMVITLTQELIMNSFKTIDGRGVNVAIAGGACITIQYVTNII 207

Query:   134 LHGHSIH 140
             +HG ++H
Sbjct:   208 IHGINVH 214

GO:0005576 "extracellular region" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0030570 "pectate lyase activity" evidence=ISS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	147
smart00656	190	smart00656, Amb_all, Amb_all domain	5e-08
pfam00544	200	pfam00544, Pec_lyase_C, Pectate lyase	2e-04

>gnl|CDD|214765 smart00656, Amb_all, Amb_all domain

 Score = 49.2 bits (118), Expect = 5e-08
 Identities = 21/53 (39%), Positives = 31/53 (58%), Gaps = 3/53 (5%)

Query: 92  DMHIKLSQ--ELIMTNDKTIDARGADVHIAYGAGIMIQHVKNVILHGHSIHYI 142
           D+ I L     +I+ ++KTID RG+ V I  G G+ I+ V NVI+   +IH  
Sbjct: 1   DVTITLDNAGTIIINSNKTIDGRGSKVEIK-GGGLTIKSVSNVIIRNLTIHDP 52

Length = 190

>gnl|CDD|215986 pfam00544, Pec_lyase_C, Pectate lyase

 Score = 39.4 bits (92), Expect = 2e-04
 Identities = 17/57 (29%), Positives = 29/57 (50%), Gaps = 14/57 (24%)

Query: 99  QELIMTNDKTIDA--------------RGADVHIAYGAGIMIQHVKNVILHGHSIHY 141
           Q L++T++KTID+              RGA+V +A     + ++  NVI+    IH+
Sbjct: 2   QPLVITSNKTIDSLTKVNVGANKTIIGRGANVSLANIGIRITKNSSNVIIQNLRIHH 58

This enzyme forms a right handed beta helix structure. Pectate lyase is an enzyme involved in the maceration and soft rotting of plant tissue. Length = 200

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	147
COG3866	345	PelB Pectate lyase [Carbohydrate transport and met	99.65
PF00544	200	Pec_lyase_C: Pectate lyase; InterPro: IPR002022 Pe	99.29
smart00656	190	Amb_all Amb_all domain.	98.99
TIGR03805	314	beta_helix_1 parallel beta-helix repeat-containing	92.9
PLN02480	343	Probable pectinesterase	92.07
PLN02197	588	pectinesterase	90.25
PLN02176	340	putative pectinesterase	88.89
PLN02304	379	probable pectinesterase	83.14
PF01696	386	Adeno_E1B_55K: Adenovirus EB1 55K protein / large	83.07
PLN02416	541	probable pectinesterase/pectinesterase inhibitor	82.7

>COG3866 PelB Pectate lyase [Carbohydrate transport and metabolism]

Probab=99.65  E-value=4.1e-16  Score=134.44  Aligned_cols=93  Identities=28%  Similarity=0.432  Sum_probs=84.6

Q ss_pred             CCccccc-------CCCCCCCCcEEEEcCCCCCCCCCCCCchHHHHHhcCCCeEEEEeeceEEEeC------ceeecCCC
Q 039754           40 CVPGFGH-------KITGGQKGPIYIVTDSSDNDFINSKPGTLCHAVIQNGPLWIIFARDMHIKLS------QELIMTND  106 (147)
Q Consensus        40 ~a~GfG~-------~ttGGrgG~vy~VT~l~d~d~~~p~~GsLr~Av~~~~P~~IvF~vsG~I~L~------~~L~v~s~  106 (147)
                      ..+|||.       +||||.||++++|++.+|          |..+++..+|.++|+-++|+|.++      .+|++.||
T Consensus        33 ~~~GfA~~~~~~~~GTtGG~~g~~v~v~ta~~----------l~~~~sa~~~~t~ii~v~Gti~~s~ps~~k~~iki~sN  102 (345)
T COG3866          33 SFAGFASNPAGSKTGTTGGSGGDIVTVRTAND----------LETYLSASGKYTVIIVVKGTITASTPSDKKITIKIGSN  102 (345)
T ss_pred             cccccccccCCCCCCcccCCCCcEEEEeeHHH----------HHHHhhccCceEEEEEEcceEeccCCCCceEEEeeccc
Confidence            3677775       899999999999999998          888999999996666789999998      57888999


Q ss_pred             ceEeccCCeeEEecCCcEEEeccCcEEEEceEEeeee
Q 039754          107 KTIDARGADVHIAYGAGIMIQHVKNVILHGHSIHYIF  143 (147)
Q Consensus       107 kTI~G~ga~v~I~~G~Gi~i~~~sNVIIrnL~I~~v~  143 (147)
                      |||.|.+++..|. |.||.|+++.|||||||+|++..
T Consensus       103 kTivG~g~~a~~~-g~gl~i~~a~NVIirNltf~~~~  138 (345)
T COG3866         103 KTIVGSGADATLV-GGGLKIRDAGNVIIRNLTFEGFY  138 (345)
T ss_pred             cEEEeeccccEEE-eceEEEEeCCcEEEEeeEEEeec
Confidence            9999999999999 99999999999999999999876

>PF00544 Pec_lyase_C: Pectate lyase; InterPro: IPR002022 Pectate lyase 4

Probab=99.29  E-value=1.4e-12  Score=104.62  Aligned_cols=57  Identities=30%  Similarity=0.416  Sum_probs=50.9

Q ss_pred             CCeEEEEeeceEEEeCceeecCCCceEeccCCeeEEecCCcEEEe-ccCcEEEEceEEeee
Q 039754           83 GPLWIIFARDMHIKLSQELIMTNDKTIDARGADVHIAYGAGIMIQ-HVKNVILHGHSIHYI  142 (147)
Q Consensus        83 ~P~~IvF~vsG~I~L~~~L~v~s~kTI~G~ga~v~I~~G~Gi~i~-~~sNVIIrnL~I~~v  142 (147)
                      +|+  ||+++|+|+++.+|.|.|||||+|+|+++.|. +.|+.+. +++|||||||+|+++
T Consensus         1 ~~~--ii~~~g~i~~~~~i~v~snkTi~G~g~~~~i~-~~G~~i~~~~~NVIirNl~~~~~   58 (200)
T PF00544_consen    1 EPL--IIKVSGTIDLKSPISVGSNKTIIGIGAGATII-GGGLRIIKGASNVIIRNLRFRNV   58 (200)
T ss_dssp             S-E--EEEEHHCCHHHCEEEEESSEEEEEETTTTEEE-SSEEEEEESCEEEEEES-EEECE
T ss_pred             CcE--EEEEEeEEccCCeEEECCCcEEEEccCCeEEE-CceEEEecCCCeEEEECCEEEec
Confidence            355  55689999999999999999999999999999 9999997 999999999999985

2.2.2 from EC is an enzyme involved in the maceration and soft rotting of plant tissue. Pectate lyase is responsible for the eliminative cleavage of pectate, yielding oligosaccharides with 4-deoxy-alpha-D-mann-4-enuronosyl groups at their non-reducing ends. The protein is maximally expressed late in pollen development. It has been suggested that the pollen expression of pectate lyase genes might relate to a requirement for pectin degradation during pollen tube growth []. The structure and the folding kinetics of one member of this family, pectate lyase C (pelC)1 from Erwinia chrysanthemi has been investigated in some detail [,]. PelC contains a parallel beta-helix folding motif. The majority of the regular secondary structure is composed of parallel beta-sheets (about 30%). The individual strands of the sheets are connected by unordered loops of varying length. The backbone is then formed by a large helix composed of beta-sheets. There are two disulphide bonds in pelC and 12 proline residues. One of these prolines, Pro220, is involved in a cis peptide bond. he folding mechanism of pelC involves two slow phases that have been attributed to proline isomerization. Some of the proteins in this family are allergens. Allergies are hypersensitivity reactions of the immune system to specific substances called allergens (such as pollen, stings, drugs, or food) that, in most people, result in no symptoms. A nomenclature system has been established for antigens (allergens) that cause IgE-mediated atopic allergies in humans [WHO/IUIS Allergen Nomenclature Subcommittee King T.P., Hoffmann D., Loewenstein H., Marsh D.G., Platts-Mills T.A.E., Thomas W. Bull. World Health Organ. 72:797-806(1994)]. This nomenclature system is defined by a designation that is composed of the first three letters of the genus; a space; the first letter of the species name; a space and an arabic number. In the event that two species names have identical designations, they are discriminated from one another by adding one or more letters (as necessary) to each species designation. The allergens in this family include allergens with the following designations: Amb a 1, Amb a 2, Amb a 3, Cha o 1, Cup a 1, Cry j 1, Jun a 1. Two of the major allergens in the pollen of short ragweed (Ambrosia artemisiifolia) are Amb aI and Amb aII. The primary structure of Amb aII has been deduced and has been shown to share ~65% sequence identity with the Amb alpha I multigene family of allergens []. Members of the Amb aI/aII family include Nicotiana tabacum (Common tobacco) pectate lyase, which is similar to the deduced amino acid sequences of two pollen-specific pectate lyase genes identified in Solanum lycopersicum (Tomato) (Lycopersicon esculentum) []; Cry jI, a major allergenic glycoprotein of Cryptomeria japonica (Japanese cedar) - the most common pollen allergen in Japan []; and P56 and P59, which share sequence similarity with pectate lyases of plant pathogenic bacteria [].; PDB: 1O8M_A 1O8K_A 1O8E_A 1O8H_A 2PEC_A 1PLU_A 1O8I_A 1O8J_A 1O8D_A 1O8F_A ....

>smart00656 Amb_all Amb_all domain

Probab=98.99  E-value=6.3e-10  Score=88.82  Aligned_cols=45  Identities=42%  Similarity=0.705  Sum_probs=42.1

Q ss_pred             ceeecCCCceEeccCCeeEEecCCcEEEeccCcEEEEceEEeeeec
Q 039754           99 QELIMTNDKTIDARGADVHIAYGAGIMIQHVKNVILHGHSIHYIFP  144 (147)
Q Consensus        99 ~~L~v~s~kTI~G~ga~v~I~~G~Gi~i~~~sNVIIrnL~I~~v~~  144 (147)
                      .+|.|.|||||+|+|+++.|. |.||.+.+++|||||||+|++..+
T Consensus        10 ~~i~v~snkTI~G~~~~~~i~-g~gl~i~~~~NVIirnl~i~~~~~   54 (190)
T smart00656       10 GTIIINSNKTIDGRGSKVEIK-GGGLTIKSVSNVIIRNLTIHDPKP   54 (190)
T ss_pred             ceEEeCCCCEEEecCCCcEEE-eeEEEEEecceEEEeCCEEECCcc
Confidence            578899999999999999998 999999999999999999998765

>TIGR03805 beta_helix_1 parallel beta-helix repeat-containing protein

Probab=92.90  E-value=0.34  Score=41.51  Aligned_cols=38  Identities=21%  Similarity=0.298  Sum_probs=22.2

Q ss_pred             HHHHhcCCCe-EEEEeeceEEEeCceeecC-CCceEeccCC
Q 039754           76 CHAVIQNGPL-WIIFARDMHIKLSQELIMT-NDKTIDARGA  114 (147)
Q Consensus        76 r~Av~~~~P~-~IvF~vsG~I~L~~~L~v~-s~kTI~G~ga  114 (147)
                      ..|+.+..|- +|++ -.|+-+++..|.|. +++||.|.+.
T Consensus         2 Q~Ai~~A~~GDtI~l-~~G~Y~~~~~l~I~~~~Iti~G~g~   41 (314)
T TIGR03805         2 QEALIAAQPGDTIVL-PEGVFQFDRTLSLDADGVTIRGAGM   41 (314)
T ss_pred             HhHHhhCCCCCEEEE-CCCEEEcceeEEEeCCCeEEEecCC
Confidence            4555554442 3333 46777776667665 6777777664

Members of this protein family contain a tandem pair of beta-helix repeats (see TIGR03804). Each repeat is expected to consist of three beta strands that form a single turn as they form a right-handed helix of stacked beta-structure. Member proteinsa occur regularly in two-gene pairs along with another uncharacterized protein family; both protein families exhibit either lipoprotein or regular signal peptides, suggesting transit through the plasma membrane, and the two may be fused. The function of the pair is unknown.

>PLN02480 Probable pectinesterase

Probab=92.07  E-value=0.87  Score=40.18  Aligned_cols=69  Identities=14%  Similarity=0.150  Sum_probs=46.0

Q ss_pred             CchHHHHHhc----CCCeEEEEeeceEEEeCceeec---CCCceEeccCCe-eEEec---------CCcEEEeccCcEEE
Q 039754           72 PGTLCHAVIQ----NGPLWIIFARDMHIKLSQELIM---TNDKTIDARGAD-VHIAY---------GAGIMIQHVKNVIL  134 (147)
Q Consensus        72 ~GsLr~Av~~----~~P~~IvF~vsG~I~L~~~L~v---~s~kTI~G~ga~-v~I~~---------G~Gi~i~~~sNVII  134 (147)
                      --|+..||..    +..+++||=..|+-+  +.|.|   ++|+||.|.+.+ ..|..         +.-|++ .++|+++
T Consensus        60 f~TIQ~AIdaap~~~~~~~~I~Ik~GvY~--E~V~I~~~kp~ItL~G~g~~~TvI~~~~~~~~~~~saTvtV-~a~~f~a  136 (343)
T PLN02480         60 FTSVQSAIDAVPVGNSEWIIVHLRKGVYR--EKVHIPENKPFIFMRGNGKGRTSIVWSQSSSDNAASATFTV-EAPHFVA  136 (343)
T ss_pred             cccHHHHHhhCccCCCceEEEEEcCcEEE--EEEEECCCCceEEEEecCCCCeEEEccccccCCCCceEEEE-ECCCEEE
Confidence            4489999865    223566665678766  56777   467899998743 44441         112333 6899999


Q ss_pred             EceEEeeee
Q 039754          135 HGHSIHYIF  143 (147)
Q Consensus       135 rnL~I~~v~  143 (147)
                      +||.|+|--
T Consensus       137 ~nLTf~Nta  145 (343)
T PLN02480        137 FGISIRNDA  145 (343)
T ss_pred             EeeEEEecC
Confidence            999999873

>PLN02197 pectinesterase

Probab=90.25  E-value=2.1  Score=40.33  Aligned_cols=105  Identities=23%  Similarity=0.319  Sum_probs=63.4

Q ss_pred             CCcchhcc--ccCccCCCcccccCCCCCCCCcE---EEEcCCCCCCCCCCCCc---hHHHHHhc----CCCeEEEEeece
Q 039754           26 CWKDWANY--RPKLADCVPGFGHKITGGQKGPI---YIVTDSSDNDFINSKPG---TLCHAVIQ----NGPLWIIFARDM   93 (147)
Q Consensus        26 ~~~~W~~~--r~~la~~a~GfG~~ttGGrgG~v---y~VT~l~d~d~~~p~~G---sLr~Av~~----~~P~~IvF~vsG   93 (147)
                      ..|.|-..  |+-|.  +.+.|.++-||.++.+   ++|--  |      +.|   |+.+||..    +..++|||=..|
T Consensus       243 ~~p~w~~~~~r~ll~--~~~~~~~~~~~~~~~~~~~~vVa~--d------GsG~f~TIq~Ai~a~P~~~~~r~vI~Ik~G  312 (588)
T PLN02197        243 GIPTWVSGADRKLMA--KAGRGANAGGGGGGKIKATHVVAK--D------GSGQFKTISQAVMACPDKNPGRCIIHIKAG  312 (588)
T ss_pred             CCCCCCCccchhhhc--cCcccccccccccccccccEEEcC--C------CCCCcCCHHHHHHhccccCCceEEEEEeCc
Confidence            46888654  44443  3455566666665543   33332  2      444   78889854    334666666788


Q ss_pred             EEEeCceeecC---CCceEeccCCe-eEEecC------CcE------E-EeccCcEEEEceEEeee
Q 039754           94 HIKLSQELIMT---NDKTIDARGAD-VHIAYG------AGI------M-IQHVKNVILHGHSIHYI  142 (147)
Q Consensus        94 ~I~L~~~L~v~---s~kTI~G~ga~-v~I~~G------~Gi------~-i~~~sNVIIrnL~I~~v  142 (147)
                      +-+  +.|.|.   .|+|+.|.|.+ ..|+..      .|.      + ...++++|.+||.|.|-
T Consensus       313 vY~--E~V~I~~~k~ni~l~G~g~~~TiIt~~~~~~~~~g~~T~~SaT~~v~~~~F~a~nitf~Nt  376 (588)
T PLN02197        313 IYN--EQVTIPKKKNNIFMFGDGARKTVISYNRSVKLSPGTTTSLSGTVQVESEGFMAKWIGFKNT  376 (588)
T ss_pred             eEE--EEEEccCCCceEEEEEcCCCCeEEEeccccccCCCCcccceeEEEEECCcEEEEEeEEEeC
Confidence            854  556663   58899998864 333310      121      1 23589999999999985

>PLN02176 putative pectinesterase

Probab=88.89  E-value=3.3  Score=36.63  Aligned_cols=68  Identities=16%  Similarity=0.264  Sum_probs=45.0

Q ss_pred             chHHHHHhc----CCCeEEEEeeceEEEeCceeec---CCCceEeccCCe-eEEec-------CC-cEEEeccCcEEEEc
Q 039754           73 GTLCHAVIQ----NGPLWIIFARDMHIKLSQELIM---TNDKTIDARGAD-VHIAY-------GA-GIMIQHVKNVILHG  136 (147)
Q Consensus        73 GsLr~Av~~----~~P~~IvF~vsG~I~L~~~L~v---~s~kTI~G~ga~-v~I~~-------G~-Gi~i~~~sNVIIrn  136 (147)
                      -|+.+||..    +..+++||-..|+-+  +.|.|   .+|+|+.|.|.+ ..|+-       +. -++ ..++|++.+|
T Consensus        52 ~TIq~AIdavP~~~~~~~~I~Ik~GvY~--EkV~Ip~~k~~vtl~G~g~~~TiIt~~~~~~t~~saT~~-v~a~~F~a~n  128 (340)
T PLN02176         52 KTVQSAIDSIPLQNQNWIRILIQNGIYR--EKVTIPKEKGYIYMQGKGIEKTIIAYGDHQATDTSATFT-SYASNIIITG  128 (340)
T ss_pred             cCHHHHHhhchhcCCceEEEEECCcEEE--EEEEECCCCccEEEEEcCCCceEEEEeCCcccccceEEE-EECCCEEEEe
Confidence            378888854    223556665678766  55666   368999999864 33321       11 222 3689999999


Q ss_pred             eEEeeee
Q 039754          137 HSIHYIF  143 (147)
Q Consensus       137 L~I~~v~  143 (147)
                      |.|.|--
T Consensus       129 lT~~Nt~  135 (340)
T PLN02176        129 ITFKNTY  135 (340)
T ss_pred             eEEEeCC
Confidence            9999864

>PLN02304 probable pectinesterase

Probab=83.14  E-value=5.9  Score=35.61  Aligned_cols=69  Identities=17%  Similarity=0.159  Sum_probs=45.2

Q ss_pred             chHHHHHhc----CCCeEEEEeeceEEEeCceeec---CCCceEeccCCee-EEecC-----------CcEEEeccCcEE
Q 039754           73 GTLCHAVIQ----NGPLWIIFARDMHIKLSQELIM---TNDKTIDARGADV-HIAYG-----------AGIMIQHVKNVI  133 (147)
Q Consensus        73 GsLr~Av~~----~~P~~IvF~vsG~I~L~~~L~v---~s~kTI~G~ga~v-~I~~G-----------~Gi~i~~~sNVI  133 (147)
                      -|+.+||..    +..+++||=..|+-+  ++|.|   ++|+|+.|.|.+- .|+..           ..-....++|++
T Consensus        88 ~TIQ~AIdavP~~~~~r~vI~Ik~GvY~--EkV~Ip~~K~~Itl~G~g~~~TiIt~~~~a~~~~gT~~SaTv~v~a~~F~  165 (379)
T PLN02304         88 TTVQSAVDAVGNFSQKRNVIWINSGIYY--EKVTVPKTKPNITFQGQGFDSTAIAWNDTAKSANGTFYSASVQVFASNFI  165 (379)
T ss_pred             cCHHHHHhhCcccCCCcEEEEEeCeEeE--EEEEECCCCCcEEEEecCCCCcEEEccCcccCCCCccceEEEEEECCCeE
Confidence            378888854    233566665678654  66777   4789999998642 23311           111123589999


Q ss_pred             EEceEEeeee
Q 039754          134 LHGHSIHYIF  143 (147)
Q Consensus       134 IrnL~I~~v~  143 (147)
                      .+||.|.|--
T Consensus       166 a~nITf~Nta  175 (379)
T PLN02304        166 AKNISFMNVA  175 (379)
T ss_pred             EEeeEEEecC
Confidence            9999999864

>PF01696 Adeno_E1B_55K: Adenovirus EB1 55K protein / large t-antigen; InterPro: IPR002612 This family consists of adenovirus E1B 55 kDa protein or large t-antigen

Probab=83.07  E-value=6.2  Score=35.65  Aligned_cols=66  Identities=12%  Similarity=0.072  Sum_probs=48.7

Q ss_pred             HHHHHhcCCCeEEEEeeceEEEeCceeecCCCceEeccCCeeEEe--cCCcEEEe---------ccCcEEEEceEEeee
Q 039754           75 LCHAVIQNGPLWIIFARDMHIKLSQELIMTNDKTIDARGADVHIA--YGAGIMIQ---------HVKNVILHGHSIHYI  142 (147)
Q Consensus        75 Lr~Av~~~~P~~IvF~vsG~I~L~~~L~v~s~kTI~G~ga~v~I~--~G~Gi~i~---------~~sNVIIrnL~I~~v  142 (147)
                      |..|+.+-.+.  -.+=+-+-++++.+.|.+--+|+|+||-+.|.  ++.+|.+.         +..+|-+.|++|..-
T Consensus        57 le~~I~~haKV--aL~Pg~~Y~i~~~V~I~~~cYIiGnGA~V~v~~~~~~~f~v~~~~~~P~V~gM~~VtF~ni~F~~~  133 (386)
T PF01696_consen   57 LEEAIRQHAKV--ALRPGAVYVIRKPVNIRSCCYIIGNGATVRVNGPDRVAFRVCMQSMGPGVVGMEGVTFVNIRFEGR  133 (386)
T ss_pred             HHHHHHhcCEE--EeCCCCEEEEeeeEEecceEEEECCCEEEEEeCCCCceEEEEcCCCCCeEeeeeeeEEEEEEEecC
Confidence            89998775532  23445667788999999999999999988884  24446654         467888888888643

E1B 55 kDa binds p53 the tumor suppressor protein converting it from a transcriptional activator which responds to damaged DNA in to an unregulated repressor of genes with a p53 binding site []. This protects the virus against p53 induced host antiviral responses and prevents apoptosis as induced by the adenovirus E1A protein []. The E1B region of adenovirus encodes two proteins E1B 55 kDa, the large t-antigen as found in this family and E1B 19 kDa IPR002924 from INTERPRO, the small t-antigen. Both of these proteins inhibit E1A induced apoptosis.

>PLN02416 probable pectinesterase/pectinesterase inhibitor

Probab=82.70  E-value=6.2  Score=36.84  Aligned_cols=66  Identities=17%  Similarity=0.264  Sum_probs=45.4

Q ss_pred             hHHHHHhc----CCCeEEEEeeceEEEeCceeec---CCCceEeccCCee-EEecC----Cc--------EEEeccCcEE
Q 039754           74 TLCHAVIQ----NGPLWIIFARDMHIKLSQELIM---TNDKTIDARGADV-HIAYG----AG--------IMIQHVKNVI  133 (147)
Q Consensus        74 sLr~Av~~----~~P~~IvF~vsG~I~L~~~L~v---~s~kTI~G~ga~v-~I~~G----~G--------i~i~~~sNVI  133 (147)
                      |+.+||..    +..++|||=..|+-+  +.|.|   .+|+||.|.|.+- .|+.+    .|        +.+ .++|++
T Consensus       244 TIq~Ai~a~p~~~~~r~vI~Ik~GvY~--E~V~i~~~k~~i~l~G~g~~~TiIt~~~~~~~g~~T~~saT~~v-~~~~F~  320 (541)
T PLN02416        244 TITDAINFAPNNSNDRIIIYVREGVYE--ENVEIPIYKTNIVLIGDGSDVTFITGNRSVVDGWTTFRSATLAV-SGEGFL  320 (541)
T ss_pred             CHHHHHHhhhhcCCceEEEEEeCceeE--EEEecCCCCccEEEEecCCCceEEeCCCccCCCCCccceEEEEE-ECCCeE
Confidence            77788854    345777777788764  56666   3689999999743 34311    12        222 589999


Q ss_pred             EEceEEeee
Q 039754          134 LHGHSIHYI  142 (147)
Q Consensus       134 IrnL~I~~v  142 (147)
                      .+||.|.|-
T Consensus       321 a~nitf~Nt  329 (541)
T PLN02416        321 ARDITIENT  329 (541)
T ss_pred             EEeeEEEEC
Confidence            999999975

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	147
1pxz_A	346	1.7 Angstrom Crystal Structure Of Jun A 1, The Majo		3e-25

>pdb|1PXZ|A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen Length = 346

Iteration: 1
 Score =  110 bits (275), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 57/124 (45%), Positives = 76/124 (61%), Gaps = 2/124 (1%)
Query: 18  NPVDRCWRCWKDWANYRPKLADCVPGFGHKITGGQKGPIYIVTDSSDNDFINSKPGTLCH 77
           NP+D CWR   +W   R KLADC  GFG    GG+ G  Y VT S+D++ +N  PGTL +
Sbjct: 2   NPIDSCWRGDSNWDQNRMKLADCAVGFGSSTMGGKGGDFYTVT-STDDNPVNPTPGTLRY 60
Query: 78  AVIQNGPLWIIFARDMHIKLSQELIMTNDKTIDARGADVHIAYGAG-IMIQHVKNVILHG 136
              +   LWIIF+++M+IKL   L +   KTID RGADVH+  G   + ++ V +VILH 
Sbjct: 61  GATREKALWIIFSQNMNIKLKMPLYVAGHKTIDGRGADVHLGNGGPCLFMRKVSHVILHS 120
Query: 137 HSIH 140
             IH
Sbjct: 121 LHIH 124

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	147
1pxz_A	346	Major pollen allergen JUN A 1; parallel beta-helix	5e-42
3zsc_A	340	Pectate trisaccharide-lyase; hydrolase; HET: ADA A	1e-25
1pe9_A	361	Pectate lyase A; parallel beta helix; 1.60A {Erwin	2e-21
3vmv_A	326	Pectate lyase; polysaccharide lyase family 1, beta	7e-20
1pcl_A	355	Pectate lyase E; lyase (acting on polysaccharides)	1e-19
1air_A	353	Pectate lyase C, PELC; pectate cleavage, pectinoly	3e-16
2qy1_A	330	Pectate lyase II; GAG lyase; 1.90A {Xanthomonas ca	4e-15
1vbl_A	416	Pectate lyase 47; PL 47, thermostable, bacillus su	1e-14
1idk_A	359	Pectin lyase A; signal, glycoprotein, multigene fa	5e-10
1qcx_A	359	Pectin lyase B; beta-helix protein, plant cell WAL	2e-08
2o04_A	399	Pectate lyase, PL; hexasaccharide compound II, cal	7e-08

>1pxz_A Major pollen allergen JUN A 1; parallel beta-helix, cedar pollen; 1.70A {Juniperus ashei} SCOP: b.80.1.1 Length = 346

 Score =  141 bits (356), Expect = 5e-42
 Identities = 56/130 (43%), Positives = 75/130 (57%), Gaps = 2/130 (1%)

Query: 18  NPVDRCWRCWKDWANYRPKLADCVPGFGHKITGGQKGPIYIVTDSSDNDFINSKPGTLCH 77
           NP+D CWR   +W   R KLADC  GFG    GG+ G  Y VT + D + +N  PGTL +
Sbjct: 2   NPIDSCWRGDSNWDQNRMKLADCAVGFGSSTMGGKGGDFYTVTSTDD-NPVNPTPGTLRY 60

Query: 78  AVIQNGPLWIIFARDMHIKLSQELIMTNDKTIDARGADVHIA-YGAGIMIQHVKNVILHG 136
              +   LWIIF+++M+IKL   L +   KTID RGADVH+   G  + ++ V +VILH 
Sbjct: 61  GATREKALWIIFSQNMNIKLKMPLYVAGHKTIDGRGADVHLGNGGPCLFMRKVSHVILHS 120

Query: 137 HSIHYIFPAS 146
             IH    + 
Sbjct: 121 LHIHGCNTSV 130

>3zsc_A Pectate trisaccharide-lyase; hydrolase; HET: ADA AQA; 1.94A {Thermotoga maritima} Length = 340

 Score = 98.1 bits (244), Expect = 1e-25
 Identities = 23/116 (19%), Positives = 39/116 (33%), Gaps = 20/116 (17%)

Query: 37  LADCVPGFGHKI--------TGGQKGPIYIVTDSSDNDFINSKPGTLCHAVIQNGPLWII 88
           L D   GF             GG  G I  V  + +          L       G   I+
Sbjct: 2   LNDKPVGFASVPTADLPEGTVGGLGGEIVFVRTAEE----------LEKYTTAEGKYVIV 51

Query: 89  FARDMHIKLSQELIMTNDKTIDARGADVHIAYGAGIMIQHVKNVILHGHSIHYIFP 144
               +  +  +E+ + +DKTI        +  G G++I+  +NVI+        + 
Sbjct: 52  VDGTIVFEPKREIKVLSDKTIVGINDAKIV--GGGLVIKDAQNVIIRNIHFEGFYM 105

>1pe9_A Pectate lyase A; parallel beta helix; 1.60A {Erwinia chrysanthemi} SCOP: b.80.1.1 PDB: 1ooc_A 1jta_A 1jrg_A Length = 361

 Score = 87.5 bits (216), Expect = 2e-21
 Identities = 18/109 (16%), Positives = 33/109 (30%), Gaps = 5/109 (4%)

Query: 43  GFGHKITGGQKGPIYIVTDSSDNDF---INSKPGTLCHAVIQNGPLWIIFARDMHIKLSQ 99
           GF           IYIVT+ S+        ++   +      +      +      K   
Sbjct: 22  GFTTGGAAATSDNIYIVTNISEFTSALSAGAEAKIIQIKGTIDISGGTPYTDFADQKARS 81

Query: 100 ELIMTNDKTIDARGADVHIAYGAGIM--IQHVKNVILHGHSIHYIFPAS 146
           ++ +  + T+   G D     G+ I+       NVI+    I       
Sbjct: 82  QINIPANTTVIGLGTDAKFINGSLIIDGTDGTNNVIIRNVYIQTPIDVE 130

>3vmv_A Pectate lyase; polysaccharide lyase family 1, beta-helix, pectolytic, polygalacturonate; 1.54A {Bacillus} PDB: 3vmw_A* Length = 326

 Score = 82.8 bits (204), Expect = 7e-20
 Identities = 19/119 (15%), Positives = 38/119 (31%), Gaps = 18/119 (15%)

Query: 38  ADCVPGFGHKI---TGGQKGPIYIVTDSSDNDFINSKPGTLCHAVIQNGPLWIIFARDMH 94
           ++   G+       TGG  G +   +  +    I         +   + PL I     + 
Sbjct: 1   SNGPQGYASMNGGTTGGAGGRVEYASTGAQ---IQQLIDNRSRSNNPDEPLTIYVNGTIT 57

Query: 95  -----------IKLSQELIMTNDKTIDARGADVHIAYGAGIMIQHVKNVILHGHSIHYI 142
                           +     + +I   G +     G GI + +  N+I+   SIH++
Sbjct: 58  QGNSPQSLIDVKNHRGKAHEIKNISIIGVGTNGEF-DGIGIRLSNAHNIIIQNVSIHHV 115

>1pcl_A Pectate lyase E; lyase (acting on polysaccharides); 2.20A {Erwinia chrysanthemi} SCOP: b.80.1.1 Length = 355

 Score = 82.5 bits (203), Expect = 1e-19
 Identities = 21/113 (18%), Positives = 39/113 (34%), Gaps = 9/113 (7%)

Query: 40  CVPGF----GHKITGGQKGPIYIVTDSSDNDFINSKPGTLCHAVIQNGPLWIIFARDMHI 95
              G+    G    G +      V + SD     +   +    +   GP+ I   +    
Sbjct: 7   ATTGWATQNGGTTGGAKAAKAVEVKNISDFKKALNGTDSSAKIIKVTGPIDISGGKAYTS 66

Query: 96  ----KLSQELIMTNDKTIDARGADVHIAYGAGIMIQHVKNVILHGHSIHYIFP 144
               K   ++ + ++ TI   G++        ++I+ VKNVIL    I     
Sbjct: 67  FDDQKARSQISIPSNTTIIGVGSNGKFT-NGSLVIKGVKNVILRNLYIETPVD 118

>1air_A Pectate lyase C, PELC; pectate cleavage, pectinolyitc activity, trans-elimination; 2.20A {Erwinia chrysanthemi} SCOP: b.80.1.1 PDB: 1o88_A 1o8d_A 1o8e_A 1o8f_A 1o8g_A 1o8h_A 1o8i_A 1o8j_A 1o8k_A 1o8l_A 1o8m_A 1plu_A 2pec_A 2ewe_A* Length = 353

 Score = 72.9 bits (178), Expect = 3e-16
 Identities = 18/113 (15%), Positives = 31/113 (27%), Gaps = 16/113 (14%)

Query: 45  GHKITGGQKGPIYIVTDSSDNDFINSKPGTLCHAVIQNGPLWIIFARDMHIKLSQEL--- 101
           G  +TG        + D  +                   PL I +  +    ++      
Sbjct: 12  GGNVTGAVSKTATSMQDIVNIIDAARLDANGKKVKGGAYPLVITYTGNEDSLINAAAANI 71

Query: 102 ------------IMTNDKTIDARGADVHIAYGAGIMIQHVKNVILHGHSIHYI 142
                       I    K I   GA+       GI I+   +V++    I Y+
Sbjct: 72  CGQWSKDPRGVEIKEFTKGITIIGANGSS-ANFGIWIKKSSDVVVQNMRIGYL 123

>2qy1_A Pectate lyase II; GAG lyase; 1.90A {Xanthomonas campestris PV} PDB: 2qxz_A 2qx3_A Length = 330

 Score = 69.7 bits (170), Expect = 4e-15
 Identities = 19/104 (18%), Positives = 39/104 (37%), Gaps = 4/104 (3%)

Query: 43  GFGHKITGGQKGPIYIVTD-SSDNDFINSKPGTLCHAVIQNGPLWIIFARDMH---IKLS 98
           G+G   TGG       V    +    I+S  G+    +   G       +D+       +
Sbjct: 4   GYGAGTTGGGNKVPVNVATFEAMQSAIDSYSGSGGLVLNYTGKFDFGTIKDVCAQWKLPA 63

Query: 99  QELIMTNDKTIDARGADVHIAYGAGIMIQHVKNVILHGHSIHYI 142
           + + + N   +  +GA+   A     ++ +  NVI+   +I  +
Sbjct: 64  KTVQIKNKSDVTIKGANGSAANFGIRVVGNAHNVIIQNMTIGLL 107

>1vbl_A Pectate lyase 47; PL 47, thermostable, bacillus subtilis, pectin, calcium ION; 1.91A {Bacillus SP} Length = 416

 Score = 68.9 bits (167), Expect = 1e-14
 Identities = 18/103 (17%), Positives = 34/103 (33%), Gaps = 3/103 (2%)

Query: 44  FGHKITGGQKGPIYIVTDSSDNDFINSKPGTLCHAVIQ-NGPLWIIFARDMHIKLSQELI 102
                     GP +      D +    +         +  GPL     R    +  + ++
Sbjct: 69  LNVDDNNQPVGPDFYKDPHFDFEAYLREYDPATWGKKEVEGPLEEARVRSQKKQKDRIMV 128

Query: 103 -MTNDKTIDARGADVHIAYGAGIMIQHVKNVILHGHSIHYIFP 144
            + ++ +I   G D  I  G G +I++V NVI+          
Sbjct: 129 YVGSNTSIIGVGKDAKI-KGGGFLIKNVDNVIIRNIEFEAPLD 170

>1idk_A Pectin lyase A; signal, glycoprotein, multigene family; 1.93A {Aspergillus niger} SCOP: b.80.1.2 PDB: 1idj_A Length = 359

 Score = 55.2 bits (132), Expect = 5e-10
 Identities = 20/145 (13%), Positives = 43/145 (29%), Gaps = 37/145 (25%)

Query: 37  LADCVPGFGHKITGGQKGPIYIVTDSSD------------------NDFINS---KPGTL 75
           ++    GF   +TGG            +                   DF +S     GT 
Sbjct: 3   VSGSAEGFAKGVTGGGSATPVYPDTIDELVSYLGDDEARVIVLTKTFDFTDSEGTTTGTG 62

Query: 76  C----------------HAVIQNGPLWIIFARDMHIKLSQELIMTNDKTIDARGADVHIA 119
           C                       P     + + +   +  + +T++K++   G+   I 
Sbjct: 63  CAPWGTASACQVAIDQDDWCENYEPDAPSVSVEYYNAGTLGITVTSNKSLIGEGSSGAIK 122

Query: 120 YGAGIMIQHVKNVILHGHSIHYIFP 144
                ++   +N+I+   ++  I P
Sbjct: 123 GKGLRIVSGAENIIIQNIAVTDINP 147

>1qcx_A Pectin lyase B; beta-helix protein, plant cell WALL; 1.70A {Aspergillus niger} SCOP: b.80.1.2 Length = 359

 Score = 50.9 bits (121), Expect = 2e-08
 Identities = 26/140 (18%), Positives = 44/140 (31%), Gaps = 37/140 (26%)

Query: 42  PGFGHKITGGQKGPIYIVTDSSDN------------------DFINS---KPGTLCHA-- 78
            GF H +TGG        T + +                   DF  +   +  T C    
Sbjct: 8   EGFAHGVTGGGSASPVYPTTTDELVSYLGDNEPRVIILDQTFDFTGTEGTETTTGCAPWG 67

Query: 79  ------VIQNGPLWIIFARDMHIKLS--------QELIMTNDKTIDARGADVHIAYGAGI 124
                 V  N   W    +    K+S          + + ++K+I  +G    I      
Sbjct: 68  TASQCQVAINLHSWCDNYQASAPKVSVTYDKAGILPITVNSNKSIVGQGTKGVIKGKGLR 127

Query: 125 MIQHVKNVILHGHSIHYIFP 144
           ++   KNVI+   ++  I P
Sbjct: 128 VVSGAKNVIIQNIAVTDINP 147

>2o04_A Pectate lyase, PL; hexasaccharide compound II, calciums; HET: ADA; 1.70A {Bacillus subtilis} PDB: 2nzm_A* 2o0v_A* 2o0w_A 2o17_A* 2o1d_A* 2bsp_A 1bn8_A 3krg_A* Length = 399

 Score = 49.1 bits (116), Expect = 7e-08
 Identities = 14/102 (13%), Positives = 25/102 (24%), Gaps = 11/102 (10%)

Query: 43  GFGHKITGGQKGPIYIVTDSSDNDFINSKPGTLCHAVIQNGPLWIIFARDMHIKLSQELI 102
           G             Y+              GT   A  ++             K    + 
Sbjct: 74  GLNDYKDPEYDLDKYLKAYDPSTWGKKEPSGTQEEARARSQKN---------QKARVMVD 124

Query: 103 MTNDKTIDARGADVHIAYGAGIMIQHVKNVILHGHSIHYIFP 144
           +  + TI   G +  +  G    I+   NVI+        + 
Sbjct: 125 IPANTTIVGSGTNAKVV-GGNFQIK-SDNVIIRNIEFQDAYD 164

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	147
1pxz_A	346	Major pollen allergen JUN A 1; parallel beta-helix	100.0
3zsc_A	340	Pectate trisaccharide-lyase; hydrolase; HET: ADA A	99.94
1idk_A	359	Pectin lyase A; signal, glycoprotein, multigene fa	99.93
3vmv_A	326	Pectate lyase; polysaccharide lyase family 1, beta	99.92
2qy1_A	330	Pectate lyase II; GAG lyase; 1.90A {Xanthomonas ca	99.91
1qcx_A	359	Pectin lyase B; beta-helix protein, plant cell WAL	99.9
1pcl_A	355	Pectate lyase E; lyase (acting on polysaccharides)	99.89
1pe9_A	361	Pectate lyase A; parallel beta helix; 1.60A {Erwin	99.89
1vbl_A	416	Pectate lyase 47; PL 47, thermostable, bacillus su	99.86
2o04_A	399	Pectate lyase, PL; hexasaccharide compound II, cal	99.86
1air_A	353	Pectate lyase C, PELC; pectate cleavage, pectinoly	99.59
1xg2_A	317	Pectinesterase 1; protein-protein complex, beta he	92.46
1gq8_A	319	Pectinesterase; hydrolase, carboxylic ester hydrol	91.59
1ru4_A	400	Pectate lyase, PEL9A; parallel beta-helix; 1.60A {	90.77
2nsp_A	342	Pectinesterase A; michaelis complex, hydrolase; HE	83.2

>1pxz_A Major pollen allergen JUN A 1; parallel beta-helix, cedar pollen; 1.70A {Juniperus ashei} SCOP: b.80.1.1

Probab=100.00  E-value=4.4e-50  Score=343.26  Aligned_cols=128  Identities=44%  Similarity=0.805  Sum_probs=122.7

Q ss_pred             CCCCcccccCCcchhccccCccCCCcccccCCCCCCCCcEEEEcCCCCCCCCCCCCchHHHHHhcCCCeEEEEeeceEEE
Q 039754           17 TNPVDRCWRCWKDWANYRPKLADCVPGFGHKITGGQKGPIYIVTDSSDNDFINSKPGTLCHAVIQNGPLWIIFARDMHIK   96 (147)
Q Consensus        17 ~n~id~cwr~~~~W~~~r~~la~~a~GfG~~ttGGrgG~vy~VT~l~d~d~~~p~~GsLr~Av~~~~P~~IvF~vsG~I~   96 (147)
                      +||||+||||+++|+++||+|++||+|||++||||+||++|+||+++| |+++|+|||||+|+++++|+||+|+++|+|+
T Consensus         1 ~~~~~~c~~~~~~w~~~~~~~~~~a~Gfg~~ttGG~gG~v~~VT~~~d-~~~~~~~GsLr~av~~~~P~~Ivf~~~g~I~   79 (346)
T 1pxz_A            1 DNPIDSCWRGDSNWDQNRMKLADCAVGFGSSTMGGKGGDFYTVTSTDD-NPVNPTPGTLRYGATREKALWIIFSQNMNIK   79 (346)
T ss_dssp             CCTTHHHHHSSCCTTTCGGGGGGCCCGGGTTCCTTTTSEEEEECCCCC-CTTSCCTTSHHHHHHCSSCEEEEESSCEEEC
T ss_pred             CCccchhhccCcchhhhhhhcccCCccccCCCcCCCCccEEEECChHH-cccccCcchhHHHhccCCCeEEEEcCCcEEe
Confidence            599999999999999999999999999999999999999999999977 6999999999999999999999999999999


Q ss_pred             eCceeecCCCceEeccCCeeEEec-CCcEEEeccCcEEEEceEEeeeecC
Q 039754           97 LSQELIMTNDKTIDARGADVHIAY-GAGIMIQHVKNVILHGHSIHYIFPA  145 (147)
Q Consensus        97 L~~~L~v~s~kTI~G~ga~v~I~~-G~Gi~i~~~sNVIIrnL~I~~v~~~  145 (147)
                      |+++|.|.|||||+|||++++|.+ |.||+|++++|||||||+|+++.+.
T Consensus        80 l~~~l~V~sn~TI~G~ga~~~i~G~G~gi~i~~a~NVIIrnl~i~~~~~~  129 (346)
T 1pxz_A           80 LKMPLYVAGHKTIDGRGADVHLGNGGPCLFMRKVSHVILHSLHIHGCNTS  129 (346)
T ss_dssp             CSSCEECCSSEEEECTTSCEEEETTSCCEEEESCEEEEEESCEEECCCCC
T ss_pred             cCccEEecCCeEEEccCCceEEeCCcceEEEEccCCEEEEeeEEEeeccC
Confidence            999999999999999999999994 4899999999999999999998643

>3zsc_A Pectate trisaccharide-lyase; hydrolase; HET: ADA AQA; 1.94A {Thermotoga maritima}

Probab=99.94  E-value=6.9e-28  Score=206.60  Aligned_cols=91  Identities=24%  Similarity=0.368  Sum_probs=85.5

Q ss_pred             CCcccccCCCCCCCCcEEEEcCCCCCCCCCCCCchHHHHHhcCCCeEEEEeeceEEEeC--ceeecCCCceEeccCCeeE
Q 039754           40 CVPGFGHKITGGQKGPIYIVTDSSDNDFINSKPGTLCHAVIQNGPLWIIFARDMHIKLS--QELIMTNDKTIDARGADVH  117 (147)
Q Consensus        40 ~a~GfG~~ttGGrgG~vy~VT~l~d~d~~~p~~GsLr~Av~~~~P~~IvF~vsG~I~L~--~~L~v~s~kTI~G~ga~v~  117 (147)
                      .|||||++||||+||++|+|||++|          ||+|+++++||||+|  +|+|+++  .+|+|.|||||+|||++ +
T Consensus        13 ~AeG~g~~ttGG~gG~v~~VTtl~d----------Lr~al~~~~PriIvv--~G~I~~~~~~~l~v~snkTI~G~ga~-~   79 (340)
T 3zsc_A           13 PTADLPEGTVGGLGGEIVFVRTAEE----------LEKYTTAEGKYVIVV--DGTIVFEPKREIKVLSDKTIVGINDA-K   79 (340)
T ss_dssp             CCSSCTTSCCTTTTSEEEEECSHHH----------HHHHHTSSSCEEEEE--EEEEEEEEEEEEEECSSEEEEEEEEE-E
T ss_pred             cccccCCCCccCCCceEEEeCCHHH----------HHHHHhCCCCEEEEE--CcEEEeCCcceEEecCCCEEEeccCc-E
Confidence            5788999999999999999999987          999999999999997  7888887  89999999999999998 8


Q ss_pred             EecCCcEEEeccCcEEEEceEEeeeec
Q 039754          118 IAYGAGIMIQHVKNVILHGHSIHYIFP  144 (147)
Q Consensus       118 I~~G~Gi~i~~~sNVIIrnL~I~~v~~  144 (147)
                      |. |.||+|++++|||||||+||++.+
T Consensus        80 I~-G~Gi~I~~a~NVIIrnl~i~~~~~  105 (340)
T 3zsc_A           80 IV-GGGLVIKDAQNVIIRNIHFEGFYM  105 (340)
T ss_dssp             EE-EEEEEEESCEEEEEESCEEECCCC
T ss_pred             Ee-cCceEEEcCceEEEeCeEEECCcc
Confidence            98 999999999999999999999863

>1idk_A Pectin lyase A; signal, glycoprotein, multigene family; 1.93A {Aspergillus niger} SCOP: b.80.1.2 PDB: 1idj_A

Probab=99.93  E-value=2.2e-26  Score=197.93  Aligned_cols=96  Identities=19%  Similarity=0.336  Sum_probs=89.9

Q ss_pred             CccCCCcccccCCCCCCCCcEEEEcCCCCCCCCCCCCchHHHHHhcCCCeEEEEeeceEEEeC-----------------
Q 039754           36 KLADCVPGFGHKITGGQKGPIYIVTDSSDNDFINSKPGTLCHAVIQNGPLWIIFARDMHIKLS-----------------   98 (147)
Q Consensus        36 ~la~~a~GfG~~ttGGrgG~vy~VT~l~d~d~~~p~~GsLr~Av~~~~P~~IvF~vsG~I~L~-----------------   98 (147)
                      .++++|+|||++||||++|++|+||+++|          ||+|+++++|+||+|  +|+|+++                 
T Consensus         2 ~~~~~a~Gfa~~tTGG~~g~~~~Vtt~~d----------L~~al~~~~prvIvv--~gti~~~~~~G~~t~~~c~~~~~~   69 (359)
T 1idk_A            2 GVSGSAEGFAKGVTGGGSATPVYPDTIDE----------LVSYLGDDEARVIVL--TKTFDFTDSEGTTTGTGCAPWGTA   69 (359)
T ss_dssp             CCCSCCCGGGTTCCTTTTCCCBCCCSHHH----------HHHHHHSSSCEEEEE--CSEEECTTTTCEEEEEEECTTCSS
T ss_pred             CCCCCCccccCCCCCCCCceEEecCCHHH----------HHHHHcCCCceEEEE--CCEEEeccccCccccccccccccc
Confidence            57889999999999999999999999987          999999999999998  8999974                 


Q ss_pred             --------------------------------ceeecCCCceEeccCCeeEEecCCcEEEe-ccCcEEEEceEEeeeec
Q 039754           99 --------------------------------QELIMTNDKTIDARGADVHIAYGAGIMIQ-HVKNVILHGHSIHYIFP  144 (147)
Q Consensus        99 --------------------------------~~L~v~s~kTI~G~ga~v~I~~G~Gi~i~-~~sNVIIrnL~I~~v~~  144 (147)
                                                      .+|+|.|||||+|+|++++|. |.||+|+ +++|||||||+||++++
T Consensus        70 ~~~~~~~~~~~w~~~~~~~~~~~~~t~~~~~~~~l~v~snkTI~G~G~~~~i~-G~gl~i~~~a~NVIIrnL~i~~~~~  147 (359)
T 1idk_A           70 SACQVAIDQDDWCENYEPDAPSVSVEYYNAGTLGITVTSNKSLIGEGSSGAIK-GKGLRIVSGAENIIIQNIAVTDINP  147 (359)
T ss_dssp             TTBCEEECGGGHHHHHSCCSCEEEEEEESSTTSCEEECSSEEEEECTTTCEEE-SCCEEECTTCEEEEEESCEEEEECT
T ss_pred             cccccccccccccccccccCccccccccccccceEEeCCCceEEEecCCeEEe-cceEEEecCCCcEEEeCeEEEcccc
Confidence                                            358999999999999999999 9999998 89999999999999875

>3vmv_A Pectate lyase; polysaccharide lyase family 1, beta-helix, pectolytic, polygalacturonate; 1.54A {Bacillus} PDB: 3vmw_A*

Probab=99.92  E-value=1.3e-25  Score=191.43  Aligned_cols=93  Identities=20%  Similarity=0.333  Sum_probs=87.0

Q ss_pred             CCCccccc---CCCCCCCCcEEEEcCCCCCCCCCCCCchHHHHHh-------cCCCeEEEEeeceEEEeC----ceeecC
Q 039754           39 DCVPGFGH---KITGGQKGPIYIVTDSSDNDFINSKPGTLCHAVI-------QNGPLWIIFARDMHIKLS----QELIMT  104 (147)
Q Consensus        39 ~~a~GfG~---~ttGGrgG~vy~VT~l~d~d~~~p~~GsLr~Av~-------~~~P~~IvF~vsG~I~L~----~~L~v~  104 (147)
                      ++|+|||+   +||||+||++|+|||++|          ||+|++       +++|++|+  |+|+|+|+    ++|.|+
T Consensus         2 ~~~~Gfa~~nggTtGG~gG~vv~Vttl~d----------L~~Al~~~~~~~~~~~p~iI~--V~G~I~l~~~~~~~i~v~   69 (326)
T 3vmv_A            2 NGPQGYASMNGGTTGGAGGRVEYASTGAQ----------IQQLIDNRSRSNNPDEPLTIY--VNGTITQGNSPQSLIDVK   69 (326)
T ss_dssp             -CCSGGGGSTTCCCTTTTSEEEEESSHHH----------HHHHHHHHHHSSCTTSCEEEE--ECSEEESTTCSSSSEEES
T ss_pred             CCCceeeecCCCCccCCCCeEEEECCHHH----------HHHHHhhcccccCCCCCEEEE--EeeEEecCCCCCceEEEe
Confidence            47899999   699999999999999988          999999       89999998  79999999    889998


Q ss_pred             ---------CCceEeccCCeeEEecCCcEEEeccCcEEEEceEEeeeec
Q 039754          105 ---------NDKTIDARGADVHIAYGAGIMIQHVKNVILHGHSIHYIFP  144 (147)
Q Consensus       105 ---------s~kTI~G~ga~v~I~~G~Gi~i~~~sNVIIrnL~I~~v~~  144 (147)
                               |||||+|+|++++|. |.||+|++++|||||||+|+++..
T Consensus        70 ~~~~~~~~~sn~TI~G~g~~~~i~-G~gl~i~~a~NVIIrNl~i~~~~~  117 (326)
T 3vmv_A           70 NHRGKAHEIKNISIIGVGTNGEFD-GIGIRLSNAHNIIIQNVSIHHVRE  117 (326)
T ss_dssp             CTTCTTSCEEEEEEEECTTCCEEE-SCCEEEESEEEEEEESCEEECCCS
T ss_pred             cccccccCCCCeEEEecCCCeEEe-CcEEEEEecceEEEECeEEEcCCC
Confidence                     999999999999999 999999999999999999998763

>2qy1_A Pectate lyase II; GAG lyase; 1.90A {Xanthomonas campestris PV} PDB: 2qxz_A 2qx3_A

Probab=99.91  E-value=5.6e-25  Score=186.67  Aligned_cols=90  Identities=21%  Similarity=0.275  Sum_probs=82.7

Q ss_pred             CCcccccCCCCCCCCcEEEEcCCCCCCCCCCCCchHHHHHhc---CCCeEEEEeeceEEEeCc---------------ee
Q 039754           40 CVPGFGHKITGGQKGPIYIVTDSSDNDFINSKPGTLCHAVIQ---NGPLWIIFARDMHIKLSQ---------------EL  101 (147)
Q Consensus        40 ~a~GfG~~ttGGrgG~vy~VT~l~d~d~~~p~~GsLr~Av~~---~~P~~IvF~vsG~I~L~~---------------~L  101 (147)
                      +|+|||++||||++|++|+|||+++          |++|+++   ++|+||+|  +|+|+++.               +|
T Consensus         1 ga~Gfa~~ttGG~gg~~~~Vtt~~~----------L~~al~~~~~~~p~iI~~--~G~i~~~~~~~~c~~~~~~~~~~~l   68 (330)
T 2qy1_A            1 GPVGYGAGTTGGGNKVPVNVATFEA----------MQSAIDSYSGSGGLVLNY--TGKFDFGTIKDVCAQWKLPAKTVQI   68 (330)
T ss_dssp             CCCSTTTTCCTTTTSCCEEECSHHH----------HHHHHHHSCSSSCEEEEE--CCBCCGGGCCCGGGSTTSCCCEEEE
T ss_pred             CCceeecCCCCCCCceEEEcCCHHH----------HHHHHhccCCCCCEEEEE--ccEEecccccccccccccccceeEE
Confidence            5899999999999999999999976          9999985   89999998  89999985               89


Q ss_pred             ecCCCceEeccCCeeEEecCCcEEEe-ccCcEEEEceEEeeeec
Q 039754          102 IMTNDKTIDARGADVHIAYGAGIMIQ-HVKNVILHGHSIHYIFP  144 (147)
Q Consensus       102 ~v~s~kTI~G~ga~v~I~~G~Gi~i~-~~sNVIIrnL~I~~v~~  144 (147)
                      ++.|||||+|+++  +|. |.||+|+ +++|||||||+|+++.+
T Consensus        69 ~v~sn~TI~G~~a--~i~-g~gl~i~~~~~NVIIrnl~i~~~~~  109 (330)
T 2qy1_A           69 KNKSDVTIKGANG--SAA-NFGIRVVGNAHNVIIQNMTIGLLQG  109 (330)
T ss_dssp             ESCCSEEEEECTT--CBB-SSEEEEESSCEEEEEESCEEESCSS
T ss_pred             EcCCCeEEECCCc--EEe-eeeEEEeCCCCeEEEeCeEEeCCCC
Confidence            9999999988775  677 9999999 99999999999998875

>1qcx_A Pectin lyase B; beta-helix protein, plant cell WALL; 1.70A {Aspergillus niger} SCOP: b.80.1.2

Probab=99.90  E-value=3.3e-24  Score=184.22  Aligned_cols=96  Identities=26%  Similarity=0.429  Sum_probs=86.4

Q ss_pred             CccCCCcccccCCCCCCCCcEEEEcCCCCCCCCCCCCchHHHHHhcCCCeEEEEeeceEEEeC-----------------
Q 039754           36 KLADCVPGFGHKITGGQKGPIYIVTDSSDNDFINSKPGTLCHAVIQNGPLWIIFARDMHIKLS-----------------   98 (147)
Q Consensus        36 ~la~~a~GfG~~ttGGrgG~vy~VT~l~d~d~~~p~~GsLr~Av~~~~P~~IvF~vsG~I~L~-----------------   98 (147)
                      ++.+.|||||++||||++|++|+|||++|          |++|+++++|++|+|  +|+|++.                 
T Consensus         2 ~~~~~a~Gfa~~tTGG~gg~~v~Vtt~~~----------L~~al~~~~prvIvv--~gtid~~g~~g~~~~~~c~~~~~~   69 (359)
T 1qcx_A            2 GVVGAAEGFAHGVTGGGSASPVYPTTTDE----------LVSYLGDNEPRVIIL--DQTFDFTGTEGTETTTGCAPWGTA   69 (359)
T ss_dssp             CCCSCCCGGGTTCCTTTTCCCBCCCSHHH----------HHHHHHSSSCEEEEE--CSEEECTTTTCEEEEEEECTTCSS
T ss_pred             CcCCCcceeecCCcCCCCcceEEeCCHHH----------HHHHHcCCCCeEEEE--CcEEeecccccccccccccccccc
Confidence            46678999999999999999999999987          999999999999994  5555531                 


Q ss_pred             --------------------------------ceeecCCCceEeccCCeeEEecCCcEEEe-ccCcEEEEceEEeeeec
Q 039754           99 --------------------------------QELIMTNDKTIDARGADVHIAYGAGIMIQ-HVKNVILHGHSIHYIFP  144 (147)
Q Consensus        99 --------------------------------~~L~v~s~kTI~G~ga~v~I~~G~Gi~i~-~~sNVIIrnL~I~~v~~  144 (147)
                                                      .+|+|.|||||+|+|++++|. |.||+|+ +++|||||||+||++.+
T Consensus        70 ~~~~~~i~~~~~~~~~~~~~p~~ti~~~~a~~~~i~v~snkTI~G~g~~~~I~-G~gl~i~~~a~NVIIrnl~i~~~~~  147 (359)
T 1qcx_A           70 SQCQVAINLHSWCDNYQASAPKVSVTYDKAGILPITVNSNKSIVGQGTKGVIK-GKGLRVVSGAKNVIIQNIAVTDINP  147 (359)
T ss_dssp             TTBCEEECGGGHHHHHCTTSCEEEEEEEGGGTSCEECCSSEEEEECTTCCEEE-SCCEEEETTCCCEEEESCEEEEECT
T ss_pred             ccccceecccccccccccCCccceeeecccccceEEeCCCceEEecCCceEEe-cceEEEecCCCCEEEeCcEEEecCC
Confidence                                            368899999999999999999 9999999 99999999999999875

>1pcl_A Pectate lyase E; lyase (acting on polysaccharides); 2.20A {Erwinia chrysanthemi} SCOP: b.80.1.1

Probab=99.89  E-value=8.6e-24  Score=181.53  Aligned_cols=94  Identities=24%  Similarity=0.317  Sum_probs=84.9

Q ss_pred             CccCCCccccc---CCCCCCCCc-EEEEcCCCCCCCCCCCCchHHHHH--hcCCCeEEEEeeceEEEeCc----------
Q 039754           36 KLADCVPGFGH---KITGGQKGP-IYIVTDSSDNDFINSKPGTLCHAV--IQNGPLWIIFARDMHIKLSQ----------   99 (147)
Q Consensus        36 ~la~~a~GfG~---~ttGGrgG~-vy~VT~l~d~d~~~p~~GsLr~Av--~~~~P~~IvF~vsG~I~L~~----------   99 (147)
                      ..+.+++|||+   +||||++|+ +|+|||++|          |++|+  +.++|++|  .|+|+|++..          
T Consensus         3 ~~~~~~~G~a~~~~gtTGG~~g~~v~~Vtt~~~----------L~~al~~~~~~p~VI--~V~GtI~~~~~~~~~s~~~~   70 (355)
T 1pcl_A            3 ETDAATTGWATQNGGTTGGAKAAKAVEVKNISD----------FKKALNGTDSSAKII--KVTGPIDISGGKAYTSFDDQ   70 (355)
T ss_pred             ccccCCcceeecCCCCccCCCCceEEEeCCHHH----------HHHHHhhCCCCcEEE--EECCEEecCCcccccccccc
Confidence            34458999998   899999997 799999988          99999  67899955  5799999974          


Q ss_pred             ----eeecCCCceEeccCCeeEEecCCcEEEeccCcEEEEceEEeee
Q 039754          100 ----ELIMTNDKTIDARGADVHIAYGAGIMIQHVKNVILHGHSIHYI  142 (147)
Q Consensus       100 ----~L~v~s~kTI~G~ga~v~I~~G~Gi~i~~~sNVIIrnL~I~~v  142 (147)
                          +|+|.|||||+|+|.+++|. |.||+|++++|||||||+|++.
T Consensus        71 ~~~~~l~v~sn~TI~G~G~~~~i~-g~gl~i~~~~NVIIrnl~i~~~  116 (355)
T 1pcl_A           71 KARSQISIPSNTTIIGVGSNGKFT-NGSLVIKGVKNVILRNLYIETP  116 (355)
T ss_pred             ccceeEEeCCCeEEEEecCCeEEe-cCEEEEecCCeEEEeeeEEEcC
Confidence                78999999999999999999 9999999999999999999975

>1pe9_A Pectate lyase A; parallel beta helix; 1.60A {Erwinia chrysanthemi} SCOP: b.80.1.1 PDB: 1ooc_A 1jta_A 1jrg_A

Probab=99.89  E-value=1.3e-23  Score=181.08  Aligned_cols=91  Identities=24%  Similarity=0.332  Sum_probs=83.7

Q ss_pred             CCccccc---CCCCCCCC---cEEEEcCCCCCCCCCCCCchHHHHH-hcCCCeEEEEeeceEEEeCc-------------
Q 039754           40 CVPGFGH---KITGGQKG---PIYIVTDSSDNDFINSKPGTLCHAV-IQNGPLWIIFARDMHIKLSQ-------------   99 (147)
Q Consensus        40 ~a~GfG~---~ttGGrgG---~vy~VT~l~d~d~~~p~~GsLr~Av-~~~~P~~IvF~vsG~I~L~~-------------   99 (147)
                      +++|||+   +||||++|   +||+|||++|          |++|+ ++++|++|+  |+|+|++..             
T Consensus        13 ~~~Gfa~~~~gtTGG~~g~~~~v~~Vtt~~d----------L~~al~~~~~p~vI~--V~GtI~~~~~~~~~s~~~~~~~   80 (361)
T 1pe9_A           13 PTVGWASQNGFTTGGAAATSDNIYIVTNISE----------FTSALSAGAEAKIIQ--IKGTIDISGGTPYTDFADQKAR   80 (361)
T ss_dssp             CSSSGGGSSSCCCTTTTCCGGGEEEECSHHH----------HHHHHTTTTSCEEEE--ECSEEETTTTCCCCSHHHHHHH
T ss_pred             CCCceeecCCCCcCCCCCccccEEEeCCHHH----------HHHHHhcCCCcEEEE--ECCEEecCCccccccccccccc
Confidence            4899995   99999998   7999999988          99999 899999875  699999974             


Q ss_pred             -eeecCCCceEeccCCeeEEecCCcEEE---eccCcEEEEceEEeeee
Q 039754          100 -ELIMTNDKTIDARGADVHIAYGAGIMI---QHVKNVILHGHSIHYIF  143 (147)
Q Consensus       100 -~L~v~s~kTI~G~ga~v~I~~G~Gi~i---~~~sNVIIrnL~I~~v~  143 (147)
                       +|+|.|||||+|+|.+++|. |.||+|   ++++|||||||+|+++.
T Consensus        81 ~~l~v~snkTI~G~G~~~~i~-g~gl~i~~~~~~~NVIIrNl~i~~~~  127 (361)
T 1pe9_A           81 SQINIPANTTVIGLGTDAKFI-NGSLIIDGTDGTNNVIIRNVYIQTPI  127 (361)
T ss_dssp             SEEECCSSEEEEECTTCCEEE-SSEEEEEGGGTCEEEEEESCEEECCC
T ss_pred             eeEEecCCcEEEccCCCeEEe-cCEEEEecCCCCceEEEeCeEEEcCc
Confidence             79999999999999999999 999999   79999999999999753

>1vbl_A Pectate lyase 47; PL 47, thermostable, bacillus subtilis, pectin, calcium ION; 1.91A {Bacillus SP}

Probab=99.86  E-value=3.4e-22  Score=175.02  Aligned_cols=92  Identities=26%  Similarity=0.411  Sum_probs=83.5

Q ss_pred             CCCccccc---CCCCCCCCc---EEEEcCCCCCCCCCCCCchHHHHHhcC--------CCeEEEEeeceEEEeCc-----
Q 039754           39 DCVPGFGH---KITGGQKGP---IYIVTDSSDNDFINSKPGTLCHAVIQN--------GPLWIIFARDMHIKLSQ-----   99 (147)
Q Consensus        39 ~~a~GfG~---~ttGGrgG~---vy~VT~l~d~d~~~p~~GsLr~Av~~~--------~P~~IvF~vsG~I~L~~-----   99 (147)
                      ..|+|||+   +||||++|.   ||+|||++|          |++|++++        +|++|+  |+|+|++..     
T Consensus         9 ~~~~GfA~~~~gTTGG~~a~~~~v~tVtt~ae----------L~~al~~~~~~~~~~~~priI~--V~GtId~~~~~~g~   76 (416)
T 1vbl_A            9 KPYDGWAAYGEGTTGGAMASPQNVFVVTNRTE----------LIQALGGNNHTNQYNSVPKIIY--VKGTIDLNVDDNNQ   76 (416)
T ss_dssp             CTTSSGGGSTTCCCTTTTCCGGGEEEECSHHH----------HHHHTTSCTTGGGGCCSCEEEE--ECSEEESSBCTTSC
T ss_pred             CCCcceeecCCCCcCCCCCccccEEEeCCHHH----------HHHHHhccccccccCCCCEEEE--ECCEEecccCCCCc
Confidence            47999999   999999995   999999987          99999864        899998  699999852     


Q ss_pred             --------------------------------------------------eeecCCCceEeccCCeeEEecCCcEEEecc
Q 039754          100 --------------------------------------------------ELIMTNDKTIDARGADVHIAYGAGIMIQHV  129 (147)
Q Consensus       100 --------------------------------------------------~L~v~s~kTI~G~ga~v~I~~G~Gi~i~~~  129 (147)
                                                                        +|.|.|||||+|+|++++|. |.||+|+++
T Consensus        77 ~~~c~~~~~~~~~~~~y~~~~~~~~~~~~~~~g~~~~~~~~s~~~~~~~~~i~v~snkTI~G~G~~~~i~-g~gl~i~~~  155 (416)
T 1vbl_A           77 PVGPDFYKDPHFDFEAYLREYDPATWGKKEVEGPLEEARVRSQKKQKDRIMVYVGSNTSIIGVGKDAKIK-GGGFLIKNV  155 (416)
T ss_dssp             BCCHHHHCCTTCCHHHHHHHHCHHHHTTSCCCSHHHHHHHHHHHHHHHHHEEECCSSEEEEECTTCCEEE-SCEEEEESC
T ss_pred             cccccccccCCcchhhhhhhhCccccccccCCCCcccccccccccccceeEEEeCCCeeEEecCCCeEEe-cCEEEeecC
Confidence                                                              67889999999999999999 999999999


Q ss_pred             CcEEEEceEEeeee
Q 039754          130 KNVILHGHSIHYIF  143 (147)
Q Consensus       130 sNVIIrnL~I~~v~  143 (147)
                      +|||||||+|++..
T Consensus       156 ~NVIIrNl~i~~~~  169 (416)
T 1vbl_A          156 DNVIIRNIEFEAPL  169 (416)
T ss_dssp             EEEEEESCEEECCC
T ss_pred             ceEEEeCeEEEcCc
Confidence            99999999998753

>2o04_A Pectate lyase, PL; hexasaccharide compound II, calciums; HET: ADA; 1.70A {Bacillus subtilis} PDB: 2nzm_A* 2o0v_A* 2o0w_A 2o17_A* 2o1d_A* 2bsp_A 1bn8_A 3krg_A*

Probab=99.86  E-value=4.8e-22  Score=173.17  Aligned_cols=90  Identities=23%  Similarity=0.404  Sum_probs=82.7

Q ss_pred             CCCccccc---CCCCCCCCc---EEEEcCCCCCCCCCCCCchHHHHH---hcCCCeEEEEeeceEEEeCc----------
Q 039754           39 DCVPGFGH---KITGGQKGP---IYIVTDSSDNDFINSKPGTLCHAV---IQNGPLWIIFARDMHIKLSQ----------   99 (147)
Q Consensus        39 ~~a~GfG~---~ttGGrgG~---vy~VT~l~d~d~~~p~~GsLr~Av---~~~~P~~IvF~vsG~I~L~~----------   99 (147)
                      ..|+|||+   +||||++|.   ||+|||++|          |++|+   +.++|++|+  ++|+|++..          
T Consensus         9 ~~a~Gfa~~~~gTTGG~~a~~~~v~tVtt~ae----------L~~al~~~~~~~priI~--v~GtId~~~~~~g~~~~c~   76 (399)
T 2o04_A            9 GSNDGWGAYSTGTTGGSKASSSNVYTVSNRNQ----------LVSALGKETNTTPKIIY--IKGTIDMNVDDNLKPLGLN   76 (399)
T ss_dssp             CTTSSGGGSTTCCCTTTTCCGGGEEEECSHHH----------HHHHHCCTTCCSCEEEE--ECSEEESSBCTTCCBCCHH
T ss_pred             CCCcceeecCCCCcCCCCCccceEEEeCCHHH----------HHHHHHhccCCCCEEEE--EcCEEecccCCcccccccc
Confidence            47999999   999999996   999999987          99999   789999998  599999851          


Q ss_pred             ---------------------------------------------eeecCCCceEeccCCeeEEecCCcEEEeccCcEEE
Q 039754          100 ---------------------------------------------ELIMTNDKTIDARGADVHIAYGAGIMIQHVKNVIL  134 (147)
Q Consensus       100 ---------------------------------------------~L~v~s~kTI~G~ga~v~I~~G~Gi~i~~~sNVII  134 (147)
                                                                   +|+|.|||||+|+|++++|. |.||+|+. +||||
T Consensus        77 ~~~~~~~~~~~~~~~~~~~~~~~~~~sg~~~~~~~~s~~~~~~~~~i~v~snkTI~G~G~~~~i~-g~gl~i~~-~NVII  154 (399)
T 2o04_A           77 DYKDPEYDLDKYLKAYDPSTWGKKEPSGTQEEARARSQKNQKARVMVDIPANTTIVGSGTNAKVV-GGNFQIKS-DNVII  154 (399)
T ss_dssp             HHCCTTCCHHHHHHHHCHHHHTTSCCCSHHHHHHHHHHHHHHHHHEEECCSSEEEEESSSCCEEE-SCEEEECS-EEEEE
T ss_pred             ccccCCcchhhhhhcccccccccccCCCcccccccccccccccceEEEeCCCceEEeccCCeEEe-eCEEEeeC-CCEEE
Confidence                                                         67889999999999999999 99999999 99999


Q ss_pred             EceEEeee
Q 039754          135 HGHSIHYI  142 (147)
Q Consensus       135 rnL~I~~v  142 (147)
                      |||+|++.
T Consensus       155 rnl~i~~~  162 (399)
T 2o04_A          155 RNIEFQDA  162 (399)
T ss_dssp             ESCEEECC
T ss_pred             eCeEEecC
Confidence            99999875

>1air_A Pectate lyase C, PELC; pectate cleavage, pectinolyitc activity, trans-elimination; 2.20A {Erwinia chrysanthemi} SCOP: b.80.1.1 PDB: 1o88_A 1o8d_A 1o8e_A 1o8f_A 1o8g_A 1o8h_A 1o8i_A 1o8j_A 1o8k_A 1o8l_A 1o8m_A 1plu_A 2pec_A 2ewe_A*

Probab=99.59  E-value=6.8e-16  Score=132.43  Aligned_cols=88  Identities=17%  Similarity=0.221  Sum_probs=69.6

Q ss_pred             CCccccc---CCCCCCCCcEEEEcCCCCCCCCCCCCchHHHHHhc-----------CCCeEEEEeeceEEEe--------
Q 039754           40 CVPGFGH---KITGGQKGPIYIVTDSSDNDFINSKPGTLCHAVIQ-----------NGPLWIIFARDMHIKL--------   97 (147)
Q Consensus        40 ~a~GfG~---~ttGGrgG~vy~VT~l~d~d~~~p~~GsLr~Av~~-----------~~P~~IvF~vsG~I~L--------   97 (147)
                      ..+||+.   +|+||  ..+|+||++++          |++|+++           ++++.+||.|+|+|+|        
T Consensus         3 ~~~G~at~~Ggt~gg--~~~~tvtt~~~----------L~~al~~~~~~~~g~~~~~~~~p~vi~v~GtId~~~~~~~~~   70 (353)
T 1air_A            3 DTGGYAATAGGNVTG--AVSKTATSMQD----------IVNIIDAARLDANGKKVKGGAYPLVITYTGNEDSLINAAAAN   70 (353)
T ss_dssp             BCSSSCBCCTTCSTT--CEEEEESSHHH----------HHHHHHHTTBCTTSCBCTBCSSCEEEEECCCCHHHHHHHHTS
T ss_pred             CCCcceecCCCCCCC--cceEEeCCHHH----------HHHHHHhhccccccccccCCCceEEEEEccEEeccccccccc
Confidence            4689987   44444  36799999976          9999965           3455556778999998        


Q ss_pred             --------Cceeec---CCCceEeccCCeeEEecCCcEEEeccCcEEEEceEEeee
Q 039754           98 --------SQELIM---TNDKTIDARGADVHIAYGAGIMIQHVKNVILHGHSIHYI  142 (147)
Q Consensus        98 --------~~~L~v---~s~kTI~G~ga~v~I~~G~Gi~i~~~sNVIIrnL~I~~v  142 (147)
                              +++|.|   .|||||+|+++.  +. |.||.|++++|||||||+|+++
T Consensus        71 ~~~~~~~~~~~~~i~~~~sn~TI~G~~~~--~~-g~gl~i~~~~NVIIrnl~i~~~  123 (353)
T 1air_A           71 ICGQWSKDPRGVEIKEFTKGITIIGANGS--SA-NFGIWIKKSSDVVVQNMRIGYL  123 (353)
T ss_dssp             GGGSTTSCCCEEEEESBCSCEEEEECTTC--CB-SSEEEEESCCSEEEESCEEESC
T ss_pred             cccccccCCCceEEEecCCCEEEEeccCC--CC-CceEEEeccCcEEEeccEEEeC
Confidence                    356766   589999999763  55 8899999999999999999975

>1xg2_A Pectinesterase 1; protein-protein complex, beta helix,four helix bundle, hydrolase/hydrolase inhibitor complex; 1.90A {Solanum lycopersicum}

Probab=92.46  E-value=0.39  Score=40.22  Aligned_cols=66  Identities=20%  Similarity=0.234  Sum_probs=45.7

Q ss_pred             hHHHHHhc----CCCeEEEEeeceEEEeCceeecC---CCceEeccCC-eeEEecC------------CcEEEeccCcEE
Q 039754           74 TLCHAVIQ----NGPLWIIFARDMHIKLSQELIMT---NDKTIDARGA-DVHIAYG------------AGIMIQHVKNVI  133 (147)
Q Consensus        74 sLr~Av~~----~~P~~IvF~vsG~I~L~~~L~v~---s~kTI~G~ga-~v~I~~G------------~Gi~i~~~sNVI  133 (147)
                      |+.+||.+    +..+++|+=..|+-+  +.|.|.   +|+||.|.+. ...|...            .-|.+ .++|++
T Consensus        17 TIq~AI~aap~~~~~~~~I~I~~G~Y~--E~V~I~~~k~~Itl~G~g~~~tiI~~~~~~~~g~~t~~satv~v-~a~~f~   93 (317)
T 1xg2_A           17 TLAEAVAAAPDKSKTRYVIYVKRGTYK--ENVEVASNKMNLMIVGDGMYATTITGSLNVVDGSTTFRSATLAA-VGQGFI   93 (317)
T ss_dssp             SHHHHHHHSCSSCSSCEEEEECSEEEE--CCEEECTTSCSEEEEESCTTTEEEEECCCTTTTCCSGGGCSEEE-CSTTCE
T ss_pred             cHHHHHhhcccCCCceEEEEEcCCEEe--eeeecCCCCCcEEEEEcCCCCcEEEecccccCCCcccceeEEEE-ECCCEE
Confidence            78999865    122444444678765  556663   6899999985 4556521            23566 799999


Q ss_pred             EEceEEeee
Q 039754          134 LHGHSIHYI  142 (147)
Q Consensus       134 IrnL~I~~v  142 (147)
                      ++||.|++-
T Consensus        94 ~~~lt~~Nt  102 (317)
T 1xg2_A           94 LQDICIQNT  102 (317)
T ss_dssp             EESCEEEEC
T ss_pred             EEEeEEecc
Confidence            999999985

>1gq8_A Pectinesterase; hydrolase, carboxylic ester hydrolase; 1.75A {Daucus carota} SCOP: b.80.1.5

Probab=91.59  E-value=0.51  Score=39.59  Aligned_cols=66  Identities=11%  Similarity=0.096  Sum_probs=45.4

Q ss_pred             hHHHHHhcC----CCeEEEEeeceEEEeCceeecC---CCceEeccCC-eeEEecC------------CcEEEeccCcEE
Q 039754           74 TLCHAVIQN----GPLWIIFARDMHIKLSQELIMT---NDKTIDARGA-DVHIAYG------------AGIMIQHVKNVI  133 (147)
Q Consensus        74 sLr~Av~~~----~P~~IvF~vsG~I~L~~~L~v~---s~kTI~G~ga-~v~I~~G------------~Gi~i~~~sNVI  133 (147)
                      |+.+||.+-    ..+++|+=..|+-+  +.|.|.   +|+||.|.+. ...|...            .-|.+ .++|++
T Consensus        21 TIq~AI~aap~~~~~~~~I~I~~G~Y~--E~V~I~~~k~~Itl~G~g~~~tiI~~~~~~~~g~~t~~satv~v-~a~~f~   97 (319)
T 1gq8_A           21 TVSEAVAAAPEDSKTRYVIRIKAGVYR--ENVDVPKKKKNIMFLGDGRTSTIITASKNVQDGSTTFNSATVAA-VGAGFL   97 (319)
T ss_dssp             SHHHHHHHSCSSCSSCEEEEECSEEEE--CCEEECTTCCSEEEEESCTTTEEEEECCCTTTTCCTGGGCSEEE-CSTTCE
T ss_pred             CHHHHHHhccccCCceEEEEEcCCeEe--eeeeccCCCccEEEEEcCCCccEEEecccccCCCCccceEEEEE-ECCCEE
Confidence            789998751    22444444678765  556664   6899999985 4556521            23555 699999


Q ss_pred             EEceEEeee
Q 039754          134 LHGHSIHYI  142 (147)
Q Consensus       134 IrnL~I~~v  142 (147)
                      ++||.|++-
T Consensus        98 ~~nlt~~Nt  106 (319)
T 1gq8_A           98 ARDITFQNT  106 (319)
T ss_dssp             EEEEEEEEC
T ss_pred             EEEeEeEcc
Confidence            999999984

>1ru4_A Pectate lyase, PEL9A; parallel beta-helix; 1.60A {Erwinia chrysanthemi} SCOP: b.80.1.9

Probab=90.77  E-value=3  Score=35.73  Aligned_cols=86  Identities=13%  Similarity=0.230  Sum_probs=47.7

Q ss_pred             CCCcEEEEcCCCCCCCCCCC-----CchHHHHHhcCCC-eEEEEeeceEEE--eC----ceeecC-CC-----ceEeccC
Q 039754           52 QKGPIYIVTDSSDNDFINSK-----PGTLCHAVIQNGP-LWIIFARDMHIK--LS----QELIMT-ND-----KTIDARG  113 (147)
Q Consensus        52 rgG~vy~VT~l~d~d~~~p~-----~GsLr~Av~~~~P-~~IvF~vsG~I~--L~----~~L~v~-s~-----kTI~G~g  113 (147)
                      ....+|+|....+ | .+++     |-||..|+.+-.| -+|++ ..|+.+  +.    ..|.+. |.     +||.|.+
T Consensus        12 ~~~~~~yVsp~Gs-d-~~~G~t~~~P~tiq~Ai~~a~pGdtI~l-~~GtY~~~~~e~~~~~i~~~~sGt~~~pIti~~~~   88 (400)
T 1ru4_A           12 STKRIYYVAPNGN-S-SNNGSSFNAPMSFSAAMAAVNPGELILL-KPGTYTIPYTQGKGNTITFNKSGKDGAPIYVAAAN   88 (400)
T ss_dssp             CCSCEEEECTTCC-T-TCCSSSTTSCBCHHHHHHHCCTTCEEEE-CSEEEECCCBTTBCCCEEECCCCBTTBCEEEEEGG
T ss_pred             cCccEEEEcCCCC-C-CCCCccccCCccHHHHHhhCCCCCEEEE-CCCeEccccccccceeEEecCCCCCCCCEEEEEec
Confidence            3446788854322 2 1223     4499999987444 34444 478877  43    234442 33     6777654


Q ss_pred             -CeeEEec----C------CcEEEeccCcEEEEceEEee
Q 039754          114 -ADVHIAY----G------AGIMIQHVKNVILHGHSIHY  141 (147)
Q Consensus       114 -a~v~I~~----G------~Gi~i~~~sNVIIrnL~I~~  141 (147)
                       ..+.|..    +      .+|.| .++++.|++|+|++
T Consensus        89 g~~~vI~~~~~~g~~~~~~~~i~i-~~~~~~i~gl~I~n  126 (400)
T 1ru4_A           89 CGRAVFDFSFPDSQWVQASYGFYV-TGDYWYFKGVEVTR  126 (400)
T ss_dssp             GCCEEEECCCCTTCCCTTCCSEEE-CSSCEEEESEEEES
T ss_pred             CCCCEEeCCccCCccccceeEEEE-ECCeEEEEeEEEEe
Confidence             2344431    1      45666 66777777777754

>2nsp_A Pectinesterase A; michaelis complex, hydrolase; HET: M8C ADA; 1.70A {Erwinia chrysanthemi} PDB: 2nst_A* 2nt6_A* 2nt9_A* 2ntp_A* 2ntb_A* 2ntq_A* 1qjv_A

Probab=83.20  E-value=3.8  Score=34.48  Aligned_cols=68  Identities=19%  Similarity=0.284  Sum_probs=46.0

Q ss_pred             chHHHHHhcC---CCeEEEEeeceEEEeCceeecC-CCceEeccCC-eeEEecC------------------CcEEEecc
Q 039754           73 GTLCHAVIQN---GPLWIIFARDMHIKLSQELIMT-NDKTIDARGA-DVHIAYG------------------AGIMIQHV  129 (147)
Q Consensus        73 GsLr~Av~~~---~P~~IvF~vsG~I~L~~~L~v~-s~kTI~G~ga-~v~I~~G------------------~Gi~i~~~  129 (147)
                      -|+.+||..-   ..+++|+=..|+-+  +.|.|. +++||.|.+. ...|...                  .-|.+ .+
T Consensus        19 ~TIq~Ai~aap~~~~~~~I~I~~G~Y~--E~V~I~k~~Itl~G~g~~~tiI~~~~~~~~~~~~g~~~gT~~satv~v-~a   95 (342)
T 2nsp_A           19 KTIADAIASAPAGSTPFVILIKNGVYN--ERLTITRNNLHLKGESRNGAVIAAATAAGTLKSDGSKWGTAGSSTITI-SA   95 (342)
T ss_dssp             SSHHHHHHTSCSSSSCEEEEECSEEEE--CCEEECSTTEEEEESCTTTEEEEECCCTTCBCTTSCBCHHHHTCSEEE-CS
T ss_pred             chHHHHHHhcccCCCcEEEEEeCCEEE--EEEEEecCeEEEEecCCCCeEEEecccccccccccCcccccceeEEEE-EC
Confidence            4788998651   12345554678765  456664 6899999985 4555411                  23455 68


Q ss_pred             CcEEEEceEEeeee
Q 039754          130 KNVILHGHSIHYIF  143 (147)
Q Consensus       130 sNVIIrnL~I~~v~  143 (147)
                      +|++++||.|++--
T Consensus        96 ~~f~a~nlt~~Nt~  109 (342)
T 2nsp_A           96 KDFSAQSLTIRNDF  109 (342)
T ss_dssp             BSCEEEEEEEEECC
T ss_pred             CCEEEEeeEEEccc
Confidence            99999999999864

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	147
d1pxza_	346	b.80.1.1 (A:) Major pollen allergen Jun a 1 {Ozark	2e-45
d1pe9a_	361	b.80.1.1 (A:) Pectate lyase {Erwinia chrysanthemi,	1e-15
d1idka_	359	b.80.1.2 (A:) Pectin lyase {Aspergillus niger, typ	3e-11
d1qcxa_	359	b.80.1.2 (A:) Pectin lyase {Aspergillus niger, typ	2e-10
d1bn8a_	399	b.80.1.1 (A:) Pectate lyase {Bacillus subtilis [Ta	3e-05

>d1pxza_ b.80.1.1 (A:) Major pollen allergen Jun a 1 {Ozark white cedar (Juniperus ashei) [TaxId: 13101]} Length = 346

class: All beta proteins
fold: Single-stranded right-handed beta-helix
superfamily: Pectin lyase-like
family: Pectate lyase-like
domain: Major pollen allergen Jun a 1
species: Ozark white cedar (Juniperus ashei) [TaxId: 13101]

 Score =  149 bits (376), Expect = 2e-45
 Identities = 56/128 (43%), Positives = 74/128 (57%), Gaps = 2/128 (1%)

Query: 18  NPVDRCWRCWKDWANYRPKLADCVPGFGHKITGGQKGPIYIVTDSSDNDFINSKPGTLCH 77
           NP+D CWR   +W   R KLADC  GFG    GG+ G  Y VT + D + +N  PGTL +
Sbjct: 2   NPIDSCWRGDSNWDQNRMKLADCAVGFGSSTMGGKGGDFYTVTSTDD-NPVNPTPGTLRY 60

Query: 78  AVIQNGPLWIIFARDMHIKLSQELIMTNDKTIDARGADVHIA-YGAGIMIQHVKNVILHG 136
              +   LWIIF+++M+IKL   L +   KTID RGADVH+   G  + ++ V +VILH 
Sbjct: 61  GATREKALWIIFSQNMNIKLKMPLYVAGHKTIDGRGADVHLGNGGPCLFMRKVSHVILHS 120

Query: 137 HSIHYIFP 144
             IH    
Sbjct: 121 LHIHGCNT 128

>d1pe9a_ b.80.1.1 (A:) Pectate lyase {Erwinia chrysanthemi, type A [TaxId: 556]} Length = 361

class: All beta proteins
fold: Single-stranded right-handed beta-helix
superfamily: Pectin lyase-like
family: Pectate lyase-like
domain: Pectate lyase
species: Erwinia chrysanthemi, type A [TaxId: 556]

 Score = 70.2 bits (171), Expect = 1e-15
 Identities = 16/129 (12%), Positives = 38/129 (29%), Gaps = 11/129 (8%)

Query: 29  DWANYRPKLADCVPGF---GHKITGGQKG-PIYIVTDSSDNDFI-----NSKPGTLCHAV 79
           +  + +   +    G+       TGG       I   ++ ++F       ++   +    
Sbjct: 2   ELVSDKALESAPTVGWASQNGFTTGGAAATSDNIYIVTNISEFTSALSAGAEAKIIQIKG 61

Query: 80  IQNGPLWIIFARDMHIKLSQELIMTNDKTIDARGADVHIAYGAGIM--IQHVKNVILHGH 137
             +      +      K   ++ +  + T+   G D     G+ I+       NVI+   
Sbjct: 62  TIDISGGTPYTDFADQKARSQINIPANTTVIGLGTDAKFINGSLIIDGTDGTNNVIIRNV 121

Query: 138 SIHYIFPAS 146
            I       
Sbjct: 122 YIQTPIDVE 130

>d1idka_ b.80.1.2 (A:) Pectin lyase {Aspergillus niger, type A [TaxId: 5061]} Length = 359

class: All beta proteins
fold: Single-stranded right-handed beta-helix
superfamily: Pectin lyase-like
family: Pectin lyase
domain: Pectin lyase
species: Aspergillus niger, type A [TaxId: 5061]

 Score = 57.5 bits (138), Expect = 3e-11
 Identities = 15/146 (10%), Positives = 35/146 (23%), Gaps = 37/146 (25%)

Query: 36  KLADCVPGFGHKITGGQKGPIYIVTDSSD-----------------------------ND 66
            ++    GF   +TGG            +                               
Sbjct: 2   GVSGSAEGFAKGVTGGGSATPVYPDTIDELVSYLGDDEARVIVLTKTFDFTDSEGTTTGT 61

Query: 67  FINSKPGTLCHAVIQNGPLWIIFARDMH--------IKLSQELIMTNDKTIDARGADVHI 118
                       V  +   W                   +  + +T++K++   G+   I
Sbjct: 62  GCAPWGTASACQVAIDQDDWCENYEPDAPSVSVEYYNAGTLGITVTSNKSLIGEGSSGAI 121

Query: 119 AYGAGIMIQHVKNVILHGHSIHYIFP 144
                 ++   +N+I+   ++  I P
Sbjct: 122 KGKGLRIVSGAENIIIQNIAVTDINP 147

>d1qcxa_ b.80.1.2 (A:) Pectin lyase {Aspergillus niger, type B [TaxId: 5061]} Length = 359

class: All beta proteins
fold: Single-stranded right-handed beta-helix
superfamily: Pectin lyase-like
family: Pectin lyase
domain: Pectin lyase
species: Aspergillus niger, type B [TaxId: 5061]

 Score = 55.1 bits (132), Expect = 2e-10
 Identities = 22/155 (14%), Positives = 39/155 (25%), Gaps = 57/155 (36%)

Query: 37  LADCVPGFGHKITGGQKGPIYIVTDSSDNDFINSKPGTLCHAVIQNGPLWIIFARD---- 92
           +     GF H +TGG        T + +          L   +  N P  II  +     
Sbjct: 3   VVGAAEGFAHGVTGGGSASPVYPTTTDE----------LVSYLGDNEPRVIILDQTFDFT 52

Query: 93  -------------------------------------------MHIKLSQELIMTNDKTI 109
                                                              + + ++K+I
Sbjct: 53  GTEGTETTTGCAPWGTASQCQVAINLHSWCDNYQASAPKVSVTYDKAGILPITVNSNKSI 112

Query: 110 DARGADVHIAYGAGIMIQHVKNVILHGHSIHYIFP 144
             +G    I      ++   KNVI+   ++  I P
Sbjct: 113 VGQGTKGVIKGKGLRVVSGAKNVIIQNIAVTDINP 147

>d1bn8a_ b.80.1.1 (A:) Pectate lyase {Bacillus subtilis [TaxId: 1423]} Length = 399

class: All beta proteins
fold: Single-stranded right-handed beta-helix
superfamily: Pectin lyase-like
family: Pectate lyase-like
domain: Pectate lyase
species: Bacillus subtilis [TaxId: 1423]

 Score = 40.1 bits (93), Expect = 3e-05
 Identities = 8/45 (17%), Positives = 16/45 (35%), Gaps = 2/45 (4%)

Query: 100 ELIMTNDKTIDARGADVHIAYGAGIMIQHVKNVILHGHSIHYIFP 144
            + +  + TI   G +  +  G    I+   NVI+        + 
Sbjct: 122 MVDIPANTTIVGSGTNAKVV-GGNFQIK-SDNVIIRNIEFQDAYD 164

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	147
d1pxza_	346	Major pollen allergen Jun a 1 {Ozark white cedar (	100.0
d1qcxa_	359	Pectin lyase {Aspergillus niger, type B [TaxId: 50	99.92
d1pcla_	355	Pectate lyase {Erwinia chrysanthemi, type E [TaxId	99.91
d1idka_	359	Pectin lyase {Aspergillus niger, type A [TaxId: 50	99.91
d1pe9a_	361	Pectate lyase {Erwinia chrysanthemi, type A [TaxId	99.87
d1bn8a_	399	Pectate lyase {Bacillus subtilis [TaxId: 1423]}	99.77
d1o88a_	353	Pectate lyase {Erwinia chrysanthemi, type C [TaxId	98.18
d1ofla_	481	Chondroitinase B {Pedobacter heparinus [TaxId: 984	88.43

>d1pxza_ b.80.1.1 (A:) Major pollen allergen Jun a 1 {Ozark white cedar (Juniperus ashei) [TaxId: 13101]}

class: All beta proteins
fold: Single-stranded right-handed beta-helix
superfamily: Pectin lyase-like
family: Pectate lyase-like
domain: Major pollen allergen Jun a 1
species: Ozark white cedar (Juniperus ashei) [TaxId: 13101]

Probab=100.00  E-value=7.1e-53  Score=356.86  Aligned_cols=128  Identities=44%  Similarity=0.805  Sum_probs=120.8

Q ss_pred             CCCCcccccCCcchhccccCccCCCcccccCCCCCCCCcEEEEcCCCCCCCCCCCCchHHHHHhcCCCeEEEEeeceEEE
Q 039754           17 TNPVDRCWRCWKDWANYRPKLADCVPGFGHKITGGQKGPIYIVTDSSDNDFINSKPGTLCHAVIQNGPLWIIFARDMHIK   96 (147)
Q Consensus        17 ~n~id~cwr~~~~W~~~r~~la~~a~GfG~~ttGGrgG~vy~VT~l~d~d~~~p~~GsLr~Av~~~~P~~IvF~vsG~I~   96 (147)
                      .||||+||||+|||+++||+||+||||||++||||+||+||+||||+| |+++|+|||||+|++|++||||||+|+|+|+
T Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~~a~Gfg~~ttGG~gG~v~~Vt~l~D-~~~~~g~GsLr~a~~~~~pr~IvF~vsg~I~   79 (346)
T d1pxza_           1 DNPIDSCWRGDSNWDQNRMKLADCAVGFGSSTMGGKGGDFYTVTSTDD-NPVNPTPGTLRYGATREKALWIIFSQNMNIK   79 (346)
T ss_dssp             CCTTHHHHHSSCCTTTCGGGGGGCCCGGGTTCCTTTTSEEEEECCCCC-CTTSCCTTSHHHHHHCSSCEEEEESSCEEEC
T ss_pred             CCCcccccCCCCCHHHHHHhhhhccccccCCCcCCCCceEEEecChhh-ccccCCCccHHHHhhCCCCeEEEEeccEEEe
Confidence            499999999999999999999999999999999999999999999987 6999999999999999999999999999999


Q ss_pred             eCceeecCCCceEeccCCeeEEec-CCcEEEeccCcEEEEceEEeeeecC
Q 039754           97 LSQELIMTNDKTIDARGADVHIAY-GAGIMIQHVKNVILHGHSIHYIFPA  145 (147)
Q Consensus        97 L~~~L~v~s~kTI~G~ga~v~I~~-G~Gi~i~~~sNVIIrnL~I~~v~~~  145 (147)
                      |+++|.|+|||||+|||+++.|.. |.+|.+.+++|||||||+||++.+.
T Consensus        80 l~~~L~v~sn~TI~G~ga~~~i~~~G~~i~i~~~~NVIirnl~i~~~~~~  129 (346)
T d1pxza_          80 LKMPLYVAGHKTIDGRGADVHLGNGGPCLFMRKVSHVILHSLHIHGCNTS  129 (346)
T ss_dssp             CSSCEECCSSEEEECTTSCEEEETTSCCEEEESCEEEEEESCEEECCCCC
T ss_pred             ccceEEeCCCceEEccCCCceEeeecceEEEecCCEEEEeceEEecCccc
Confidence            999999999999999999999982 3458889999999999999987643

>d1qcxa_ b.80.1.2 (A:) Pectin lyase {Aspergillus niger, type B [TaxId: 5061]}

class: All beta proteins
fold: Single-stranded right-handed beta-helix
superfamily: Pectin lyase-like
family: Pectin lyase
domain: Pectin lyase
species: Aspergillus niger, type B [TaxId: 5061]

Probab=99.92  E-value=3.8e-26  Score=193.35  Aligned_cols=97  Identities=26%  Similarity=0.429  Sum_probs=87.5

Q ss_pred             CccCCCcccccCCCCCCCCcEEEEcCCCCCCCCCCCCchHHHHHhcCCCeEEEEeeceEEEeC-----------------
Q 039754           36 KLADCVPGFGHKITGGQKGPIYIVTDSSDNDFINSKPGTLCHAVIQNGPLWIIFARDMHIKLS-----------------   98 (147)
Q Consensus        36 ~la~~a~GfG~~ttGGrgG~vy~VT~l~d~d~~~p~~GsLr~Av~~~~P~~IvF~vsG~I~L~-----------------   98 (147)
                      .+...|||||++||||++|++|+|||++|          ||+|+++++|+||+|  +|+|.+.                 
T Consensus         2 ~v~g~a~Gfa~~ttGG~~g~v~~Vtt~~e----------L~~al~~~~PriI~~--~gtid~~~~~~~~~~~~~~~~~~~   69 (359)
T d1qcxa_           2 GVVGAAEGFAHGVTGGGSASPVYPTTTDE----------LVSYLGDNEPRVIIL--DQTFDFTGTEGTETTTGCAPWGTA   69 (359)
T ss_dssp             CCCSCCCGGGTTCCTTTTCCCBCCCSHHH----------HHHHHHSSSCEEEEE--CSEEECTTTTCEEEEEEECTTCSS
T ss_pred             CCCccCcccccCCCCCCCCeEEEeCCHHH----------HHHHhcCCCCeEEEE--CceEcccccccccccccccccccc
Confidence            35678999999999999999999999987          999999999999999  5777764                 


Q ss_pred             --------------------------------ceeecCCCceEeccCCeeEEecCCcEEE-eccCcEEEEceEEeeeecC
Q 039754           99 --------------------------------QELIMTNDKTIDARGADVHIAYGAGIMI-QHVKNVILHGHSIHYIFPA  145 (147)
Q Consensus        99 --------------------------------~~L~v~s~kTI~G~ga~v~I~~G~Gi~i-~~~sNVIIrnL~I~~v~~~  145 (147)
                                                      .+|.|.|||||+|+|+++.|. |.||.+ .+++|||||||+||+..+.
T Consensus        70 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~sn~TI~G~g~~~~i~-g~g~~~~~~~~NVIirnl~ir~~~~~  148 (359)
T d1qcxa_          70 SQCQVAINLHSWCDNYQASAPKVSVTYDKAGILPITVNSNKSIVGQGTKGVIK-GKGLRVVSGAKNVIIQNIAVTDINPK  148 (359)
T ss_dssp             TTBCEEECGGGHHHHHCTTSCEEEEEEEGGGTSCEECCSSEEEEECTTCCEEE-SCCEEEETTCCCEEEESCEEEEECTT
T ss_pred             cccccccccccccccccccCcceeeeeeccCcceEEeCCCCeEEeccCCeEEE-ccceEEEeCCccEEEeCeEEecCCCC
Confidence                                            368999999999999999999 999977 5799999999999988753

>d1pcla_ b.80.1.1 (A:) Pectate lyase {Erwinia chrysanthemi, type E [TaxId: 556]}

class: All beta proteins
fold: Single-stranded right-handed beta-helix
superfamily: Pectin lyase-like
family: Pectate lyase-like
domain: Pectate lyase
species: Erwinia chrysanthemi, type E [TaxId: 556]

Probab=99.91  E-value=4.8e-25  Score=185.25  Aligned_cols=95  Identities=21%  Similarity=0.253  Sum_probs=86.9

Q ss_pred             cCCCccccc----CCCCCCCCcEEEEcCCCCCCCCCCCCchHHHHHhcCCCeEEEEeeceEEEeC--------------c
Q 039754           38 ADCVPGFGH----KITGGQKGPIYIVTDSSDNDFINSKPGTLCHAVIQNGPLWIIFARDMHIKLS--------------Q   99 (147)
Q Consensus        38 a~~a~GfG~----~ttGGrgG~vy~VT~l~d~d~~~p~~GsLr~Av~~~~P~~IvF~vsG~I~L~--------------~   99 (147)
                      ..++.||++    .|+||+||++|+|||++|          ||+|+++++|+.+||+|+|+|+|.              .
T Consensus         5 ~~a~~G~a~~~g~~t~GG~gg~v~~Vt~l~d----------L~~al~~~~~~~~vi~v~G~I~~~~~~~~~~~~~~~~~~   74 (355)
T d1pcla_           5 DAATTGWATQNGGTTGGAKAAKAVEVKNISD----------FKKALNGTDSSAKIIKVTGPIDISGGKAYTSFDDQKARS   74 (355)
T ss_pred             cCCCCceeccCCCCCcCCCCceEEEeCCHHH----------HHHHHhCcCCceEEEEECeEEEcCCccceeccccccccc
Confidence            347889977    588999999999999988          999999999999999999999874              4


Q ss_pred             eeecCCCceEeccCCeeEEecCCcEEEeccCcEEEEceEEeeee
Q 039754          100 ELIMTNDKTIDARGADVHIAYGAGIMIQHVKNVILHGHSIHYIF  143 (147)
Q Consensus       100 ~L~v~s~kTI~G~ga~v~I~~G~Gi~i~~~sNVIIrnL~I~~v~  143 (147)
                      +|.|.|||||+|||++++|. |.||.|++++|||||||+||...
T Consensus        75 ~i~v~sn~TI~G~G~~~~i~-g~gl~i~~a~NVIirnl~ir~~~  117 (355)
T d1pcla_          75 QISIPSNTTIIGVGSNGKFT-NGSLVIKGVKNVILRNLYIETPV  117 (355)
T ss_pred             eEecCCCCeEEeccCceEEe-cCEEEEEccccEEEEeeEeecCc
Confidence            67889999999999999999 99999999999999999999754

>d1idka_ b.80.1.2 (A:) Pectin lyase {Aspergillus niger, type A [TaxId: 5061]}

class: All beta proteins
fold: Single-stranded right-handed beta-helix
superfamily: Pectin lyase-like
family: Pectin lyase
domain: Pectin lyase
species: Aspergillus niger, type A [TaxId: 5061]

Probab=99.91  E-value=1.9e-25  Score=188.25  Aligned_cols=98  Identities=18%  Similarity=0.302  Sum_probs=86.6

Q ss_pred             ccCCCcccccCCCCCCCCcEEEEcCCCCCCCCCCCCchHHHHHhcCCCeEEEEe--------------------------
Q 039754           37 LADCVPGFGHKITGGQKGPIYIVTDSSDNDFINSKPGTLCHAVIQNGPLWIIFA--------------------------   90 (147)
Q Consensus        37 la~~a~GfG~~ttGGrgG~vy~VT~l~d~d~~~p~~GsLr~Av~~~~P~~IvF~--------------------------   90 (147)
                      ++..|||||++||||++|++|+|||++|          |++|++.++|++|+|+                          
T Consensus         3 v~~~a~Gfa~~ttGG~~g~~~~Vtt~~e----------L~~al~~~~PriI~~~g~~d~~~~~~~~~~~~~~~~~~~~~~   72 (359)
T d1idka_           3 VSGSAEGFAKGVTGGGSATPVYPDTIDE----------LVSYLGDDEARVIVLTKTFDFTDSEGTTTGTGCAPWGTASAC   72 (359)
T ss_dssp             CCSCCCGGGTTCCTTTTCCCBCCCSHHH----------HHHHHHSSSCEEEEECSEEECTTTTCEEEEEEECTTCSSTTB
T ss_pred             ccccCcccccCCCCCCCCeEEEeCCHHH----------HHHHhcCCCCeEEEEcceEecccccccccccccccccccccc
Confidence            4568999999999999999999999987          9999999999999993                          


Q ss_pred             ---------------------eceEEEeCceeecCCCceEeccCCeeEEecCCcEEE-eccCcEEEEceEEeeeecC
Q 039754           91 ---------------------RDMHIKLSQELIMTNDKTIDARGADVHIAYGAGIMI-QHVKNVILHGHSIHYIFPA  145 (147)
Q Consensus        91 ---------------------vsG~I~L~~~L~v~s~kTI~G~ga~v~I~~G~Gi~i-~~~sNVIIrnL~I~~v~~~  145 (147)
                                           +++.++++.+|+|.|||||+|+|+++.|. |.||.| .+++|||||||+||+..+.
T Consensus        73 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~sn~TI~G~g~~~~i~-g~g~~i~~~~~NVIiRNl~i~~~~~~  148 (359)
T d1idka_          73 QVAIDQDDWCENYEPDAPSVSVEYYNAGTLGITVTSNKSLIGEGSSGAIK-GKGLRIVSGAENIIIQNIAVTDINPK  148 (359)
T ss_dssp             CEEECGGGHHHHHSCCSCEEEEEEESSTTSCEEECSSEEEEECTTTCEEE-SCCEEECTTCEEEEEESCEEEEECTT
T ss_pred             ccccccccccccccccCccceeeeeccCCCceEeCCCceEEeccCCeEEe-cCceEEEecCceEEEECcEEecCCCC
Confidence                                 23334445679999999999999999999 999998 5799999999999998764

>d1pe9a_ b.80.1.1 (A:) Pectate lyase {Erwinia chrysanthemi, type A [TaxId: 556]}

class: All beta proteins
fold: Single-stranded right-handed beta-helix
superfamily: Pectin lyase-like
family: Pectate lyase-like
domain: Pectate lyase
species: Erwinia chrysanthemi, type A [TaxId: 556]

Probab=99.87  E-value=1.4e-22  Score=171.46  Aligned_cols=99  Identities=24%  Similarity=0.325  Sum_probs=82.9

Q ss_pred             cccCccC-CCccccc---CCCCCCCC---cEEEEcCCCCCCCCCCCCchHHHHHhcCCCeEEEEeeceEEEeC-------
Q 039754           33 YRPKLAD-CVPGFGH---KITGGQKG---PIYIVTDSSDNDFINSKPGTLCHAVIQNGPLWIIFARDMHIKLS-------   98 (147)
Q Consensus        33 ~r~~la~-~a~GfG~---~ttGGrgG---~vy~VT~l~d~d~~~p~~GsLr~Av~~~~P~~IvF~vsG~I~L~-------   98 (147)
                      .+++|+. +++||+.   +||||+||   ++|+|||++|          ||+|++++.|..||+ |+|+|+|.       
T Consensus         5 ~~~~~~s~~~~G~a~~~ggttGG~gg~~g~v~~Vt~l~d----------L~~al~~~~~p~iI~-v~G~I~~~~~~~~~~   73 (361)
T d1pe9a_           5 SDKALESAPTVGWASQNGFTTGGAAATSDNIYIVTNISE----------FTSALSAGAEAKIIQ-IKGTIDISGGTPYTD   73 (361)
T ss_dssp             CTTTTCCCCSSSGGGSSSCCCTTTTCCGGGEEEECSHHH----------HHHHHTTTTSCEEEE-ECSEEETTTTCCCCS
T ss_pred             ccchhhccCCcceeecCCCCCcCCCCcCCEEEEeCCHHH----------HHHHHhCCCCeEEEE-EeeEEECCCCccccc
Confidence            3456665 6799987   78887776   6999999987          999998755444444 89999995       


Q ss_pred             -------ceeecCCCceEeccCCeeEEecCCcEEEe---ccCcEEEEceEEeeee
Q 039754           99 -------QELIMTNDKTIDARGADVHIAYGAGIMIQ---HVKNVILHGHSIHYIF  143 (147)
Q Consensus        99 -------~~L~v~s~kTI~G~ga~v~I~~G~Gi~i~---~~sNVIIrnL~I~~v~  143 (147)
                             .+|.|.|||||+|||++++|. +.||.|.   +++|||||||+||+..
T Consensus        74 ~~~~~~~~~i~v~sn~TI~G~g~~~~i~-~~gl~i~~~~~~~NVIiRnl~ir~~~  127 (361)
T d1pe9a_          74 FADQKARSQINIPANTTVIGLGTDAKFI-NGSLIIDGTDGTNNVIIRNVYIQTPI  127 (361)
T ss_dssp             HHHHHHHSEEECCSSEEEEECTTCCEEE-SSEEEEEGGGTCEEEEEESCEEECCC
T ss_pred             cccccccceEEeCCCcEEEEecCCeEEe-eeeEEEeeccccceEEEEeEEeecCc
Confidence                   578899999999999999999 9999995   6899999999999753

>d1bn8a_ b.80.1.1 (A:) Pectate lyase {Bacillus subtilis [TaxId: 1423]}

class: All beta proteins
fold: Single-stranded right-handed beta-helix
superfamily: Pectin lyase-like
family: Pectate lyase-like
domain: Pectate lyase
species: Bacillus subtilis [TaxId: 1423]

Probab=99.77  E-value=3.3e-19  Score=152.50  Aligned_cols=96  Identities=22%  Similarity=0.375  Sum_probs=82.7

Q ss_pred             cCccCCCccccc---CCCCCCCC---cEEEEcCCCCCCCCCCCCchHHHHHh---cCCCeEEEEeeceEEEeCc------
Q 039754           35 PKLADCVPGFGH---KITGGQKG---PIYIVTDSSDNDFINSKPGTLCHAVI---QNGPLWIIFARDMHIKLSQ------   99 (147)
Q Consensus        35 ~~la~~a~GfG~---~ttGGrgG---~vy~VT~l~d~d~~~p~~GsLr~Av~---~~~P~~IvF~vsG~I~L~~------   99 (147)
                      ++....++||++   +||||.++   .+|+|+|.++          |..|+.   .++|++|++  +|+|....      
T Consensus         5 ~~~~~~~~G~As~~~gttGG~~a~~~~v~~v~t~~e----------l~~~l~~~~~~~P~vI~~--~gti~~~~~~~~~~   72 (399)
T d1bn8a_           5 HQTLGSNDGWGAYSTGTTGGSKASSSNVYTVSNRNQ----------LVSALGKETNTTPKIIYI--KGTIDMNVDDNLKP   72 (399)
T ss_dssp             GCCCCTTSSGGGSTTCCCTTTTCCGGGEEEECSHHH----------HHHHHCCTTCCSCEEEEE--CSEEESSBCTTCCB
T ss_pred             hhcccCCCceeecCCCcCCCCCCCCCceEecCCHHH----------HHHHHhhccCCCceEEEE--ccEEeccccccccc
Confidence            345557899985   89999765   5999999987          899983   588999986  89997642      


Q ss_pred             -------------------------------------------------eeecCCCceEeccCCeeEEecCCcEEEeccC
Q 039754          100 -------------------------------------------------ELIMTNDKTIDARGADVHIAYGAGIMIQHVK  130 (147)
Q Consensus       100 -------------------------------------------------~L~v~s~kTI~G~ga~v~I~~G~Gi~i~~~s  130 (147)
                                                                       +|.|.|||||+|+|.+++|. |.||.| +++
T Consensus        73 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~V~SNkTIiG~G~~~~i~-g~gl~i-~a~  150 (399)
T d1bn8a_          73 LGLNDYKDPEYDLDKYLKAYDPSTWGKKEPSGTQEEARARSQKNQKARVMVDIPANTTIVGSGTNAKVV-GGNFQI-KSD  150 (399)
T ss_dssp             CCHHHHCCTTCCHHHHHHHTCHHHHCSSCCCSHHHHHHHHHHHHHHHHHEEEECSSEEEEECTTCCEEE-SCEEEE-CSE
T ss_pred             ccccccccccccccccccccChhhhccccccccccccccccccccccceEEecCCCceEEecCCCcEEe-ccEEEE-eCc
Confidence                                                             58899999999999999999 999999 799


Q ss_pred             cEEEEceEEeeeec
Q 039754          131 NVILHGHSIHYIFP  144 (147)
Q Consensus       131 NVIIrnL~I~~v~~  144 (147)
                      |||||||+||++++
T Consensus       151 NVIirnl~i~~~~~  164 (399)
T d1bn8a_         151 NVIIRNIEFQDAYD  164 (399)
T ss_dssp             EEEEESCEEECCCC
T ss_pred             eEEEeCeEEEcCcc
Confidence            99999999998875

>d1o88a_ b.80.1.1 (A:) Pectate lyase {Erwinia chrysanthemi, type C [TaxId: 556]}

class: All beta proteins
fold: Single-stranded right-handed beta-helix
superfamily: Pectin lyase-like
family: Pectate lyase-like
domain: Pectate lyase
species: Erwinia chrysanthemi, type C [TaxId: 556]

Probab=98.18  E-value=7.3e-07  Score=73.40  Aligned_cols=37  Identities=27%  Similarity=0.393  Sum_probs=30.7

Q ss_pred             cCCCceEeccCCeeEEecCCcEEEeccCcEEEEceEEeee
Q 039754          103 MTNDKTIDARGADVHIAYGAGIMIQHVKNVILHGHSIHYI  142 (147)
Q Consensus       103 v~s~kTI~G~ga~v~I~~G~Gi~i~~~sNVIIrnL~I~~v  142 (147)
                      +.+++||.|+.+  .+. +.||.|.+++|||||||+|+..
T Consensus        87 ~~~~i~i~G~~~--~~~-~~gl~i~~~~nViirnl~i~~~  123 (353)
T d1o88a_          87 FTKGITIIGANG--SSA-NFGIWIKKSSDVVVQNMRIGYL  123 (353)
T ss_dssp             BCSCEEEEECTT--CCB-SSEEEEESCCSEEEESCEEECC
T ss_pred             cCCCEEEEcCCC--ccc-cceEEEeccceEEEeCcEEecC
Confidence            456788888766  455 8899999999999999999865

>d1ofla_ b.80.1.4 (A:) Chondroitinase B {Pedobacter heparinus [TaxId: 984]}

class: All beta proteins
fold: Single-stranded right-handed beta-helix
superfamily: Pectin lyase-like
family: Chondroitinase B
domain: Chondroitinase B
species: Pedobacter heparinus [TaxId: 984]

Probab=88.43  E-value=0.99  Score=35.72  Aligned_cols=68  Identities=22%  Similarity=0.107  Sum_probs=43.7

Q ss_pred             hHHHHHhcCCC-eEEEEeeceEEE-----eCceeecCCCceEeccCC-eeEEecCCcEEEeccCcEEEEceEEeeee
Q 039754           74 TLCHAVIQNGP-LWIIFARDMHIK-----LSQELIMTNDKTIDARGA-DVHIAYGAGIMIQHVKNVILHGHSIHYIF  143 (147)
Q Consensus        74 sLr~Av~~~~P-~~IvF~vsG~I~-----L~~~L~v~s~kTI~G~ga-~v~I~~G~Gi~i~~~sNVIIrnL~I~~v~  143 (147)
                      ||.+|+..-.| =+|++ ..|+-+     ++.......-.||.+.+. .+.|..+..++| ..++|.|.+|+|.+..
T Consensus         8 tiq~Ai~~a~pGDtI~l-~~GtY~~~~i~~~~~Gt~~~pIti~a~~~g~v~i~G~s~i~i-~g~~v~i~Gl~~~~~~   82 (481)
T d1ofla_           8 TLYQVVKEVKPGGLVQI-ADGTYKDVQLIVSNSGKSGLPITIKALNPGKVFFTGDAKVEL-RGEHLILEGIWFKDGN   82 (481)
T ss_dssp             HHHHHHHHCCTTCEEEE-CSEEEETCEEEECCCCBTTBCEEEEESSTTSEEEEESCEEEE-CSSSEEEESCEEEEEC
T ss_pred             HHHHHHHhCCCCCEEEE-CCCEEEcCEEEeccCcccCCCEEEEeCCCCceEEcCCCeEEE-EeCCEEEeCeEEECCC
Confidence            59999987443 34444 466554     332223334478888765 466664566777 5689999999998753