Citrus Sinensis ID: 039808

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------36
Protein Sequence
MDLSCNVEYVKMPPQLISSGIISRLHALKTLSIVVYPGDKRWYKDVKSVVLEVCNLTELSSLCFHFPEIKLLELFLQRCVAWNAQCLTEFRIVVGHDIKNIVSRVPDAVAFDYNKQGKCLRFINGENIPDAVLQILACCTAFYLDNHLHINSLSDFGVRSINGLKFCIISECPKIETVVDGKELTTVIFPSLENLSIHHLWNLTHICEGSVPNGSFARLRILSVHACPKLKFVFSSFMIHFMSNLEDLTVEDCPAIEEIISEGEIIDSGCTALPRLKKLTLHYLPGLVTIWSSAWPSLEYVSFYDCPRLKNIGLGSNLKHSVMEIKAEKSWWDDLEWEDTELQLHLQNCFTTISEDDL
Secondary Structure (PSIPRED)
cccccccccccccccccccccccccccccEEEEEEcccccccccccccccHHccccccccEEEEEcccccHHHHHHHHHHHcccccccccEEEEEcccccccccccccccccccccccEEEEcccccccHHHHHHcccccEEEEcccccccccccccccccccccEEEEEEccccEEEEccccccEEccccccEEEEcccccccccccccccccccccccEEEcccccccccccccHHHcccccccEEEEEEcccccccccccccccccccccccccEEEEEcccccccccccccccccEEEEEcccccccccccccccccEEEEEEEcccccccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
ccccccccEEEccHHHcccccHHHHHHHEEEEEEEccccccccccHHHHHHHHHHHHHccEEEEEccccccHHHHccccccHHHHHccEEEEEEEcccccEEEcccccccccccccccHEEEEccccccHHHHHHHHHHHHHHHHHcccccccccccHHHHHHHcEEEEccccccEEEEccccccccccHHHHHEHHHHHHHHHHHHcccccccccHccEEEEEcccccHHHccHHHHHHHcccccEEEEEccHHHHHHccccccccccccccHccEEEEEcccHHHHHHccccccccEEEEEEccccccccccccccccccEEEEccHHHHHHcccccHHHHHHcccccccccHccc
Coil and Loop (DISEMBL)
mdlscnveyvkmppqlisSGIISRLHALKTLSIvvypgdkrwykDVKSVVLEVCNltelsslcfhfpeIKLLELFLQRCVAWNAQCLTEFRIVVGHDIKNIVSRVPDAVafdynkqgkclrfingenipDAVLQILACCTAFYldnhlhinslsdfgvrsinGLKFciisecpkietvvdgkelttvifpslenlsihhLWNLthicegsvpngsfaRLRILsvhacpklkFVFSSFMIHFmsnledltvedcpAIEEIIsegeiidsgctalprlkkltlhylpglvtiwssawpsleyvsfydcprlkniglgsnlKHSVMEIKAEKSWWDDLEWEDTELQLHLQNCFttiseddl
Flexible Loop (DISEMBL)
MDLSCNVEYVKMPPQLISSGIISRLHALKTLSIVVYPGDKRWYKDVKSVVLEVCNLTELSSLCFHFPEIKLLELFLQRCVAWNAQCLTEFRIVVGHDIKNIVSRVPDAVAFDYNKQGKCLRFINGENIPDAVLQILACCTAFYLDNHLHINSLSDFGVRSINGLKFCIISECPKIETVVDGKELTTVIFPSLENLSIHHLWNLTHICEGSVPNGSFARLRILSVHACPKLKFVFSSFMIHFMSNLEDLTVEDCPAIEEIIsegeiidsGCTALPRLKKLTLHYLPGLVTIWSSAWPSLEYVSFYDCPRLKNIGLGSNLKHSVMEIKAEKSWWDDLEWEDTELQLHLQNCFTTISEDDL
Low Complexity Region (SEG)
MDLSCNVEYVKMPPQLISSGIISRLHALKTLSIVVYPGDKRWYKDVKSVVLEVCNLTELSSLCFHFPEIKLLELFLQRCVAWNAQCLTEFRIVVGHDIKNIVSRVPDAVAFDYNKQGKCLRFINGENIPDAVLQILACCTAFYLDNHLHINSLSDFGVRSINGLKFCIISECPKIETVVDGKELTTVIFPSLENLSIHHLWNLTHICEGSVPNGSFARLRILSVHACPKLKFVFSSFMIHFMSNLEDLTVEDCPAieeiisegeiiDSGCTALPRLKKLTLHYLPGLVTIWSSAWPSLEYVSFYDCPRLKNIGLGSNLKHSVMEIKAEKSWWDDLEWEDTELQLHLQNCFTTISEDDL
Disordered region (IsUnstruct)
****CNVEYVKMPPQLISSGIISRLHALKTLSIVVYPGDKRWYKDVKSVVLEVCNLTELSSLCFHFPEIKLLELFLQRCVAWNAQCLTEFRIVVGHDIKNIVSRVPDAVAFDYNKQGKCLRFINGENIPDAVLQILACCTAFYLDNHLHINSLSDFGVRSINGLKFCIISECPKIETVVDGKELTTVIFPSLENLSIHHLWNLTHICEGSVPNGSFARLRILSVHACPKLKFVFSSFMIHFMSNLEDLTVEDCPAIEEIISEGEIIDSGCTALPRLKKLTLHYLPGLVTIWSSAWPSLEYVSFYDCPRLKNIGLGSNLKHSVMEIKAEKSWWDDLEWEDTELQLHLQNCFTTI*****
Disordered Region (DISOPRED)
MDLSCNVEYVKMPPQLISSGIISRLHALKTLSIVVYPGDKRWYKDVKSVVLEVCNLTELSSLCFHFPEIKLLELFLQRCVAWNAQCLTEFRIVVGHDIKNIVSRVPDAVAFDYNKQGKCLRFINGENIPDAVLQILACCTAFYLDNHLHINSLSDFGVRSINGLKFCIISECPKIETVVDGKELTTVIFPSLENLSIHHLWNLTHICEGSVPNGSFARLRILSVHACPKLKFVFSSFMIHFMSNLEDLTVEDCPAIEEIIS*********TALPRLKKLTLHYLPGLVTIWSSAWPSLEYVSFYDCPRLKNIGL*******VMEIKAEKSWWDDLEWEDTELQLHLQNCFTTI*****
Disordered Region (DISEMBL)
MDLSCNVEYVKMPPQLISSGIISRLHALKTLSIVVYPGDKRWYKDVKSVVLEVCNLTELSSLCFHFPEIKLLELFLQRCVAWNAQCLTEFRIVVGHDIKNIVSRVPDAVAFDYNKQGKCLRFINGENIPDAVLQILACCTAFYLDNHLHINSLSDFGVRSINGLKFCIISECPKIETVVDGKELTTVIFPSLENLSIHHLWNLTHICEGSVPNGSFARLRILSVHACPKLKFVFSSFMIHFMSNLEDLTVEDCPAIEEIISEGEIIDSGCTALPRLKKLTLHYLPGLVTIWSSAWPSLEYVSFYDCPRLKNIGLGSNLKHSVMEIKAEKSWWDDLEWEDTELQLHLQNCFTTISEDDL
Disordered Region (DISPRO)
MDLSCNVEYVKMPPQLISSGIISRLHALKTLSIVVYPGDKRWYKDVKSVVLEVCNLTELSSLCFHFPEIKLLELFLQRCVAWNAQCLTEFRIVVGHDIKNIVSRVPDAVAFDYNKQGKCLRFINGENIPDAVLQILACCTAFYLDNHLHINSLSDFGVRSINGLKFCIISECPKIETVVDGKELTTVIFPSLENLSIHHLWNLTHICEGSVPNGSFARLRILSVHACPKLKFVFSSFMIHFMSNLEDLTVEDCPAIEEIISEGEIIDSGCTALPRLKKLTLHYLPGLVTIWSSAWPSLEYVSFYDCPRLKNIGLGSNLKHSVMEIKAEKSWWDDLEWEDTELQLHLQNCFTTIS****
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MDLSCNVEYVKMPPQLISSGIISRLHALKTLSIVVYPGDKRWYKDVKSVVLEVCNLTELSSLCFHFPEIKLLELFLQRCVAWNAQCLTEFRIVVGHDIKNIVSRVPDAVAFDYNKQGKCLRFINGENIPDAVLQILACCTAFYLDNHLHINSLSDFGVRSINGLKFCIISECPKIETVVDGKELTTVIFPSLENLSIHHLWNLTHICEGSVPNGSFARLRILSVHACPKLKFVFSSFMIHFMSNLEDLTVEDCPAIEEIISEGEIIDSGCTALPRLKKLTLHYLPGLVTIWSSAWPSLEYVSFYDCPRLKNIGLGSNLKHSVMEIKAEKSWWDDLEWEDTELQLHLQNCFTTISEDDL
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	358	2.2.26 [Sep-21-2011]
Q42484	909	Disease resistance protei	yes	no	0.525	0.206	0.301	4e-11
Q9T048	985	Disease resistance protei	no	no	0.455	0.165	0.274	1e-08
Q9SI85	893	Probable disease resistan	no	no	0.371	0.148	0.285	0.0002
Q9LVT3	948	Probable disease resistan	no	no	0.388	0.146	0.267	0.0002
Q9C8T9	898	Putative disease resistan	no	no	0.340	0.135	0.298	0.0002
O64973	889	Disease resistance protei	no	no	0.351	0.141	0.287	0.0003
Q8L3R3	885	Disease resistance protei	no	no	0.430	0.174	0.264	0.0005
O82484	892	Putative disease resistan	no	no	0.444	0.178	0.257	0.0006

>sp|Q42484|RPS2_ARATH Disease resistance protein RPS2 OS=Arabidopsis thaliana GN=RPS2 PE=1 SV=1

 Score = 69.3 bits (168), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 61/202 (30%), Positives = 93/202 (46%), Gaps = 14/202 (6%)

Query: 146 NHLHI---NSLSDFGVRSI----NGLKFCIISECPKIETVVDGKELTTVIFPSLENLSIH 198
            HLH+   N L  F + S+      L+   I  C  +E +V   +      PSLE L++H
Sbjct: 694 QHLHVEECNELLYFNLPSLTNHGRNLRRLSIKSCHDLEYLVTPADFENDWLPSLEVLTLH 753

Query: 199 HLWNLTHICEGSVPNGSFARLRILSVHACPKLKFVFSSFMIHFMSNLEDLTVEDCPAIEE 258
            L NLT +   SV       +R +++  C KLK V     +  +  LE + + DC  IEE
Sbjct: 754 SLHNLTRVWGNSVSQDCLRNIRCINISHCNKLKNV---SWVQKLPKLEVIELFDCREIEE 810

Query: 259 IISEGEIID-SGCTALPRLKKLTLHYLPGLVTIWSS--AWPSLEYVSFYDCPRLKNIGLG 315
           +ISE E       T  P LK L    LP L +I  S  ++  +E +   +CPR+K +   
Sbjct: 811 LISEHESPSVEDPTLFPSLKTLRTRDLPELNSILPSRFSFQKVETLVITNCPRVKKLPFQ 870

Query: 316 S-NLKHSVMEIKAEKSWWDDLE 336
               + ++  +  E+ WW  LE
Sbjct: 871 ERRTQMNLPTVYCEEKWWKALE 892

Disease resistance (R) protein that specifically recognizes the AvrRpt2 type III effector avirulence protein from Pseudomonas syringae. Resistance proteins guard the plant against pathogens that contain an appropriate avirulence protein via an indirect interaction with this avirulence protein. That triggers a defense system including the hypersensitive response, which restricts the pathogen growth. Acts via its interaction with RIN4, and probably triggers the plant resistance when RIN4 is degraded by AvrRpt2.
Arabidopsis thaliana (taxid: 3702)

>sp|Q9T048|DRL27_ARATH Disease resistance protein At4g27190 OS=Arabidopsis thaliana GN=At4g27190 PE=2 SV=1

 Score = 61.6 bits (148), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 47/171 (27%), Positives = 78/171 (45%), Gaps = 8/171 (4%)

Query: 188 IFPSLENLSIHHLWNLTHICEGSVPNG-SFARLRILSVHACPKLKFVFSSFMIHFMSNLE 246
           + P+LE L +  + +L    E     G     L+I+ +  C KL+ +        + NLE
Sbjct: 807 LLPNLEELHLRRV-DLETFSELQTHLGLKLETLKIIEITMCRKLRTLLDKRNFLTIPNLE 865

Query: 247 DLTVEDCPAIEEIISEGEIIDSGCTALPRLKKLTLHYLPGLVTI--WSSAWPSLEYVSFY 304
           ++ +  C +++ +    E +      +P L+ L L  LP LV+I  W   W  LE V   
Sbjct: 866 EIEISYCDSLQNL---HEALLYHQPFVPNLRVLKLRNLPNLVSICNWGEVWECLEQVEVI 922

Query: 305 DCPRLKNIGLGSNLKHSVMEIKAEKSWWDDLEWEDTELQLHLQNCFTTISE 355
            C +L  + + S     + +IK E SWW+ LEW+D      +Q  F  + E
Sbjct: 923 HCNQLNCLPISSTCGR-IKKIKGELSWWERLEWDDPSALTTVQPFFNPVRE 972

Disease resistance protein.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SI85|DRL14_ARATH Probable disease resistance protein At1g62630 OS=Arabidopsis thaliana GN=At1g62630 PE=3 SV=2

 Score = 47.4 bits (111), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 42/147 (28%), Positives = 70/147 (47%), Gaps = 14/147 (9%)

Query: 202 NLTHICEGSVPNGSFARLRILSVHACPKLKFVFSSFMIHFMSNLEDLTVEDCPAIEEIIS 261
           +++ I  G + N  F  L  ++++ C  L+ +  +F+I F   L  L+V D   +E+II+
Sbjct: 728 SISEIKMGGICN--FLSLVDVTIYNCEGLREL--TFLI-FAPKLRSLSVVDAKDLEDIIN 782

Query: 262 EG---EIIDSGCTALPRLKKLTLHYLPGLVTIWSSAWP--SLEYVSFYDCPRLKNIGL-- 314
           E    E  DSG    P LK L L  LP L  I+    P   LE ++  +CP L+ + L  
Sbjct: 783 EEKACEGEDSGIVPFPELKYLNLDDLPKLKNIYRRPLPFLCLEKITIGECPNLRKLPLDS 842

Query: 315 --GSNLKHSVMEIKAEKSWWDDLEWED 339
             G   ++  +    +  W   ++W D
Sbjct: 843 RSGKQGENGCIIHYKDSRWLKGVKWAD 869

Probable disease resistance protein.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LVT3|DRL38_ARATH Probable disease resistance protein At5g47260 OS=Arabidopsis thaliana GN=At5g47260 PE=3 SV=2

 Score = 47.0 bits (110), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 41/153 (26%), Positives = 72/153 (47%), Gaps = 14/153 (9%)

Query: 215 SFARLRILSVHACPKLKFVFSSFMIHFMSNLEDLTVEDCPAIEEIISEGEII----DSGC 270
            F  +R +++H C  L+ +     +     L +L+V +CP +EE+IS+ + +    ++  
Sbjct: 719 QFQNIRTMTIHRCEYLRDLT---WLLLAPCLGELSVSECPQMEEVISKDKAMAKLGNTSE 775

Query: 271 TALPRLKKLTLHYLPGLVTIWSS--AWPSLEYVSFYDCPRLKNIGLGSNLK-HSVMEIKA 327
                L KL L  LP L +I+ +   +P LEY+    CP L+ +   S     + +E   
Sbjct: 776 QPFQNLTKLVLDGLPKLESIYWTPLPFPVLEYLVIRRCPELRRLPFNSESTIGNQVETII 835

Query: 328 EKSWWDDLEWEDTELQL---HLQNC-FTTISED 356
           E+     +EWED   +    H  N  F  ++ED
Sbjct: 836 EEQVIKIVEWEDEATKQRFSHFNNRDFVQMAED 868

Potential disease resistance protein.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9C8T9|DRL19_ARATH Putative disease resistance protein At1g63350 OS=Arabidopsis thaliana GN=At1g63350 PE=2 SV=1

 Score = 47.0 bits (110), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 40/134 (29%), Positives = 69/134 (51%), Gaps = 12/134 (8%)

Query: 215 SFARLRILSVHACPKLKFVFSSFMIHFMSNLEDLTVEDCPAIEEIISEGEIID---SGCT 271
           SF+ L  +++  C +L+ +  +F++ F  NL+ L V     +E+II++ +  D   SG  
Sbjct: 733 SFSSLIEVNLSNCRRLREL--TFLM-FAPNLKRLHVVSSNQLEDIINKEKAHDGEKSGIV 789

Query: 272 ALPRLKKLTLHYLPGLVTIWSS--AWPSLEYVSFYDCPRLKNIGL----GSNLKHSVMEI 325
             P+L +L L+ L  L  I+ S   +P LE ++   CP LK + L    G +  + ++  
Sbjct: 790 PFPKLNELHLYNLRELKNIYWSPLPFPCLEKINVMGCPNLKKLPLDSKSGKHGGNGLIIT 849

Query: 326 KAEKSWWDDLEWED 339
             E  W   +EWED
Sbjct: 850 HREMEWITRVEWED 863

Potential disease resistance protein.

Arabidopsis thaliana (taxid: 3702)

>sp|O64973|RPS5_ARATH Disease resistance protein RPS5 OS=Arabidopsis thaliana GN=RPS5 PE=1 SV=2

 Score = 46.6 bits (109), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 40/139 (28%), Positives = 63/139 (45%), Gaps = 13/139 (9%)

Query: 215 SFARLRILSVHACPKLKFVFSSFMIHFMSNLEDLTVEDCPAIEEIISEGEIIDSGCTALP 274
           + +R+ I   H    L ++       F  NL  L V     +E+IISE +  +   T +P
Sbjct: 746 NLSRVFIAKCHGLKDLTWLL------FAPNLTFLEVGFSKEVEDIISEEKAEEHSATIVP 799

Query: 275 RLKKLTLHY--LPGLVTIWSSA--WPSLEYVSFYDCPRLKNIGLGSNLKHSVMEI---KA 327
             K  TLH   L GL  I++ A  +P L+ +    C +L+ + L S    +  E+     
Sbjct: 800 FRKLETLHLFELRGLKRIYAKALHFPCLKVIHVEKCEKLRKLPLDSKSGIAGEELVIYYG 859

Query: 328 EKSWWDDLEWEDTELQLHL 346
           E+ W + +EWED   QL  
Sbjct: 860 EREWIERVEWEDQATQLRF 878

Disease resistance (R) protein that specifically recognizes the avrPphB type III effector avirulence protein from Pseudomonas syringae. Also confers resistance against Hyaloperonospora parasitica (downy mildew). Resistance proteins guard the plant against pathogens that contain an appropriate avirulence protein via an indirect interaction with this avirulence protein. That triggers a defense system including the hypersensitive response, which restricts the pathogen growth. Requires PBS1 to trigger the defense reaction against avrPphB. Probably triggers the defense mechanism when PBS1 is cleaved by avrPphB, suggesting that it detects indirectly the protease activity of avrPphB, and possibly binds to the cleaved RPS5.

Arabidopsis thaliana (taxid: 3702)

>sp|Q8L3R3|RFL1_ARATH Disease resistance protein RFL1 OS=Arabidopsis thaliana GN=RFL1 PE=3 SV=2

 Score = 45.8 bits (107), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 46/174 (26%), Positives = 77/174 (44%), Gaps = 20/174 (11%)

Query: 187 VIFPSLENLSIHHLWN--LTHICEGSVP------NGSFARLRILSVHACPKLKFVFSSFM 238
           ++ P++ NL    +WN  +  I     P      N +F+ L  + +  C  LK +     
Sbjct: 705 LVLPAIHNLCYISIWNCWMWEIMIEKTPWKKNLTNPNFSNLSNVRIEGCDGLKDLT---W 761

Query: 239 IHFMSNLEDLTVEDCPAIEEIISE---GEIIDSGCTALPRLKKLTLHYLPGLVTIWSSAW 295
           + F  NL +L V  C  +E+IIS+     +++       +L+ L L+ L  L +I+ +A 
Sbjct: 762 LLFAPNLINLRVWGCKHLEDIISKEKAASVLEKEILPFQKLECLNLYQLSELKSIYWNAL 821

Query: 296 PSLEYVSF---YDCPRLKNIGLGSNLKHSVMEI---KAEKSWWDDLEWEDTELQ 343
           P           +CP+L+ + L S     V E      EK W + +EWED   Q
Sbjct: 822 PFQRLRCLDILNNCPKLRKLPLDSKSVVKVEEFVIKYKEKKWIERVEWEDEATQ 875

Disease resistance (R) protein.

Arabidopsis thaliana (taxid: 3702)

>sp|O82484|DRL23_ARATH Putative disease resistance protein At4g10780 OS=Arabidopsis thaliana GN=At4g10780 PE=2 SV=1

 Score = 45.4 bits (106), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 51/198 (25%), Positives = 88/198 (44%), Gaps = 39/198 (19%)

Query: 178 VVDGKELTTVIFPSLENLSIHHLWNLTHICEGSVPNGSFARLRILSVHACPKLKFVFSSF 237
           + D ++ T +  P++++L    +WN    CE  +      RL   +    P   F  S  
Sbjct: 694 IYDQEQDTKLRLPTMDSLRSLTMWN----CE--ISEIEIERLTWNTNPTSPCF-FNLSQV 746

Query: 238 MIHFMSNLEDLT------------VEDCPAIEEIISEGEIIDSGCTA-----------LP 274
           +IH  S+L+DLT            +E    ++E+IS  +   +G T              
Sbjct: 747 IIHVCSSLKDLTWLLFAPNITYLMIEQLEQLQELISHAKA--TGVTEEEQQQLHKIIPFQ 804

Query: 275 RLKKLTLHYLPGLVTIW--SSAWPSLEYVSFYDCPRLKNIGL----GSNLKHSVMEIKAE 328
           +L+ L L  LP L +I+  S ++P L  +    CP+L+ + L    G+  K  V++ K E
Sbjct: 805 KLQILHLSSLPELKSIYWISLSFPCLSGIYVERCPKLRKLPLDSKTGTVGKKFVLQYK-E 863

Query: 329 KSWWDDLEWEDTELQLHL 346
             W + +EW+D   +LH 
Sbjct: 864 TEWIESVEWKDEATKLHF 881

Potential disease resistance protein.

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	358
297739481	681	unnamed protein product [Vitis vinifera]	0.955	0.502	0.345	8e-56
359486211	1240	PREDICTED: disease resistance protein At	0.955	0.275	0.345	1e-55
297739476	1781	unnamed protein product [Vitis vinifera]	0.952	0.191	0.339	1e-55
147841399	1037	hypothetical protein VITISV_019907 [Viti	0.952	0.328	0.346	1e-55
147808039	774	hypothetical protein VITISV_033092 [Viti	0.888	0.410	0.362	3e-54
297739483	1057	unnamed protein product [Vitis vinifera]	0.952	0.322	0.340	3e-54
147804938	867	hypothetical protein VITISV_001216 [Viti	0.857	0.354	0.361	2e-53
147853686	990	hypothetical protein VITISV_010483 [Viti	0.935	0.338	0.357	4e-52
147798654	1864	hypothetical protein VITISV_038474 [Viti	0.944	0.181	0.345	1e-51
147853651	1723	hypothetical protein VITISV_036992 [Viti	0.986	0.204	0.338	8e-49

>gi|297739481|emb|CBI29663.3| unnamed protein product [Vitis vinifera]

 Score =  223 bits (569), Expect = 8e-56,   Method: Compositional matrix adjust.
 Identities = 124/359 (34%), Positives = 197/359 (54%), Gaps = 17/359 (4%)

Query: 16  LISSGIISRLHALKTLSIVVYPGDKRWYKDVKSVVLEVCNLTELSSLCFHFPEIKLLELF 75
           LI   +I +L  L+ L I V P D++W   ++ +V EVC+L +L +L  + P++  L+ F
Sbjct: 216 LIPRNVIQQLFQLQELRIDVNPDDEQWNATMEDIVKEVCSLKQLEALKIYLPQVAPLDHF 275

Query: 76  LQRCVAWNAQCLTEFRIVVGHDIKNIVSRVPDAVAFDYNKQGKCLRFINGENIPDAVLQI 135
           ++   +     L  FR VVG     I+SR+P+ +A  +  Q + L+++NGE IP  + ++
Sbjct: 276 MRNGTSSVYTSLVHFRFVVGSHHSRIISRLPNELAIKFELQARSLKYVNGEGIPSQIKEV 335

Query: 136 LACCTAFYLDNHLHINSLSDFGVRSINGLKFCIISECPKIETVVDGKE-----------L 184
           L  CTA +LD HL +  LS+FG+ ++  L+FC++ EC KIET+VDG E            
Sbjct: 336 LQHCTALFLDRHLTLTKLSEFGIGNMKKLEFCVLGECYKIETIVDGAENCKQREDDGDFY 395

Query: 185 TTVIFPSLENLSIHHLWNLTHICEGSVPNGSFARLRILSVHACPKLKFVFSSFMIHFMSN 244
              I  SL+ L +H++ NL  I +G V  G  + L+ L++H CP+L  +F+  ++  +++
Sbjct: 396 GENILGSLQFLRLHYMKNLVSIWKGPVWRGCLSSLKSLTLHECPQLTTIFTLGLLENLNS 455

Query: 245 LEDLTVEDCPAIEEIISEGEIIDSGC----TALPRLKKLTLHYLPGLVTIWSS--AWPSL 298
           LE+L  E CP I  I++  +  +       T LP L+K++LH++P LV I S     P L
Sbjct: 456 LEELVAEWCPEINSIVTLEDPAEHKPFPLRTYLPNLRKISLHFMPKLVNISSGLPIAPKL 515

Query: 299 EYVSFYDCPRLKNIGLGSNLKHSVMEIKAEKSWWDDLEWEDTELQLHLQNCFTTISEDD 357
           E++SFY+CP L  +        S+  I  E  WW  LEW       H  N F  I  D+
Sbjct: 516 EWMSFYNCPCLGTLSDKEFCSISINVIIGEADWWRSLEWSSFFGFAHQHNVFVPIKRDE 574

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359486211|ref|XP_003633411.1| PREDICTED: disease resistance protein At4g27190-like [Vitis vinifera]

 Score =  223 bits (568), Expect = 1e-55,   Method: Compositional matrix adjust.
 Identities = 124/359 (34%), Positives = 197/359 (54%), Gaps = 17/359 (4%)

Query: 16   LISSGIISRLHALKTLSIVVYPGDKRWYKDVKSVVLEVCNLTELSSLCFHFPEIKLLELF 75
            LI   +I +L  L+ L I V P D++W   ++ +V EVC+L +L +L  + P++  L+ F
Sbjct: 747  LIPRNVIQQLFQLQELRIDVNPDDEQWNATMEDIVKEVCSLKQLEALKIYLPQVAPLDHF 806

Query: 76   LQRCVAWNAQCLTEFRIVVGHDIKNIVSRVPDAVAFDYNKQGKCLRFINGENIPDAVLQI 135
            ++   +     L  FR VVG     I+SR+P+ +A  +  Q + L+++NGE IP  + ++
Sbjct: 807  MRNGTSSVYTSLVHFRFVVGSHHSRIISRLPNELAIKFELQARSLKYVNGEGIPSQIKEV 866

Query: 136  LACCTAFYLDNHLHINSLSDFGVRSINGLKFCIISECPKIETVVDGKE-----------L 184
            L  CTA +LD HL +  LS+FG+ ++  L+FC++ EC KIET+VDG E            
Sbjct: 867  LQHCTALFLDRHLTLTKLSEFGIGNMKKLEFCVLGECYKIETIVDGAENCKQREDDGDFY 926

Query: 185  TTVIFPSLENLSIHHLWNLTHICEGSVPNGSFARLRILSVHACPKLKFVFSSFMIHFMSN 244
               I  SL+ L +H++ NL  I +G V  G  + L+ L++H CP+L  +F+  ++  +++
Sbjct: 927  GENILGSLQFLRLHYMKNLVSIWKGPVWRGCLSSLKSLTLHECPQLTTIFTLGLLENLNS 986

Query: 245  LEDLTVEDCPAIEEIISEGEIIDSG----CTALPRLKKLTLHYLPGLVTIWSS--AWPSL 298
            LE+L  E CP I  I++  +  +       T LP L+K++LH++P LV I S     P L
Sbjct: 987  LEELVAEWCPEINSIVTLEDPAEHKPFPLRTYLPNLRKISLHFMPKLVNISSGLPIAPKL 1046

Query: 299  EYVSFYDCPRLKNIGLGSNLKHSVMEIKAEKSWWDDLEWEDTELQLHLQNCFTTISEDD 357
            E++SFY+CP L  +        S+  I  E  WW  LEW       H  N F  I  D+
Sbjct: 1047 EWMSFYNCPCLGTLSDKEFCSISINVIIGEADWWRSLEWSSFFGFAHQHNVFVPIKRDE 1105

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297739476|emb|CBI29658.3| unnamed protein product [Vitis vinifera]

 Score =  223 bits (568), Expect = 1e-55,   Method: Compositional matrix adjust.
 Identities = 121/356 (33%), Positives = 196/356 (55%), Gaps = 15/356 (4%)

Query: 16  LISSGIISRLHALKTLSIVVYPGDKRWYKDVKSVVLEVCNLTELSSLCFHFPEIKLLELF 75
           +I   ++S L  L+ L I V P D+RW   +K +V EVC+   L +L  + PE+ L+  F
Sbjct: 586 MIPHNMLSGLTQLEELGIHVNPDDERWDVTMKDIVKEVCSFKHLETLKLYLPEVILVNEF 645

Query: 76  LQRCVAWNAQCLTEFRIVVGHDIKNIVSRVPDAVAFDYNKQGKCLRFINGENIPDAVLQI 135
           +    +     L  FR ++G   K  VSR+P  +   + +Q +CL+++NGE IP  + +I
Sbjct: 646 MGSGTSSRNLSLMNFRFIIGSHRKRFVSRLPQEIVVKFEQQKRCLKYVNGEGIPMEIKKI 705

Query: 136 LACCTAFYLDNHLHINSLSDFGVRSINGLKFCIISECPKIETVVDGKE-----------L 184
           L   TA  L+ HL +  LS+FG+ +   L+FC++ EC KI+T+VDG E            
Sbjct: 706 LEHATALLLERHLTLTKLSEFGIENTMKLEFCVLGECSKIQTLVDGAENYRQGDDYGYVH 765

Query: 185 TTVIFPSLENLSIHHLWNLTHICEGSVPNGSFARLRILSVHACPKLKFVFSSFMIHFMSN 244
             +I  SL  L +H++ NL  I +G +  G  +RL  L ++ACP+LK  F+  ++  ++ 
Sbjct: 766 QKIILGSLRYLRLHYMKNLGSIWKGPIWEGCLSRLESLELYACPQLKTTFTLALLENLNR 825

Query: 245 LEDLTVEDCPAIEEIISEGEIIDSGC--TALPRLKKLTLHYLPGLVTIWSS--AWPSLEY 300
           L++L VE+CP I  +++     +     T LP+LKK++LHYLP L +I S     P LE+
Sbjct: 826 LKELAVENCPKINSLVTHEVPAEDMLLKTYLPKLKKISLHYLPKLASISSGLHIAPHLEW 885

Query: 301 VSFYDCPRLKNIGLGSNLKHSVMEIKAEKSWWDDLEWEDTELQLHLQNCFTTISED 356
           +SFY+CP ++ + +     +++  I  E  WW  L+W    L+  L + F  I  D
Sbjct: 886 MSFYNCPSIEALSIMEVSSNNLKVIIGEVDWWRALKWRKPVLRRKLDSIFVPIKSD 941

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147841399|emb|CAN71233.1| hypothetical protein VITISV_019907 [Vitis vinifera]

 Score =  223 bits (567), Expect = 1e-55,   Method: Compositional matrix adjust.
 Identities = 124/358 (34%), Positives = 197/358 (55%), Gaps = 17/358 (4%)

Query: 16  LISSGIISRLHALKTLSIVVYPGDKRWYKDVKSVVLEVCNLTELSSLCFHFPEIKLLELF 75
           LI   +I +L  L+ LSI V P D++W   ++ +V EVC+L +L +L  + P++  L+ F
Sbjct: 610 LIPRNVIQQLFQLQELSIDVNPDDEQWNATMEDIVKEVCSLKQLEALKIYLPQVAPLDHF 669

Query: 76  LQRCVAWNAQCLTEFRIVVGHDIKNIVSRVPDAVAFDYNKQGKCLRFINGENIPDAVLQI 135
           ++   +     L  FR VVG     I+SR+P+ +A  +  Q + L+++NGE IP  + ++
Sbjct: 670 MKNGTSSVYTSLVHFRFVVGSHHSRIISRLPNELAIKFELQARSLKYVNGEGIPSQIKEV 729

Query: 136 LACCTAFYLDNHLHINSLSDFGVRSINGLKFCIISECPKIETVVDGKE-----------L 184
           L  CTA +LD HL +  LS+FG+ ++  L+FC++ EC KIET+VDG E            
Sbjct: 730 LQHCTALFLDRHLTLTKLSEFGIGNMKKLEFCVLGECYKIETIVDGAENCKQREDDGDVY 789

Query: 185 TTVIFPSLENLSIHHLWNLTHICEGSVPNGSFARLRILSVHACPKLKFVFSSFMIHFMSN 244
              I  SL+ L +H++ NL  I +G V  G  + L+ L++H CP+L  +F+  ++  +++
Sbjct: 790 GENILGSLQFLRLHYMKNLVSIWKGPVWRGCLSSLKSLALHECPQLTTIFTLGLLENLNS 849

Query: 245 LEDLTVEDCPAIEEIISEGEIIDSGC----TALPRLKKLTLHYLPGLVTIWSSAW--PSL 298
           LE+L  E CP I  I++  +  +       T LP L+K++LHY+P LV I S     P L
Sbjct: 850 LEELVAEWCPEINSIVTLEDPAEHRPFPLRTYLPNLRKISLHYVPKLVNISSGLRIAPKL 909

Query: 299 EYVSFYDCPRLKNIGLGSNLKHSVMEIKAEKSWWDDLEWEDTELQLHLQNCFTTISED 356
           E++SFY+CPRL+ +       H +  I  E  WW  L+           N F  I  D
Sbjct: 910 EWMSFYNCPRLETLSDMEVCCHGIKVIIGEADWWSTLKRSSYFGLAQWHNVFVPIKSD 967

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147808039|emb|CAN62148.1| hypothetical protein VITISV_033092 [Vitis vinifera]

 Score =  218 bits (556), Expect = 3e-54,   Method: Compositional matrix adjust.
 Identities = 122/337 (36%), Positives = 199/337 (59%), Gaps = 19/337 (5%)

Query: 15  QLISSGIISRLHALKTLSIVVYPGDKRWYKDVKSVVLEVCNLTELSSLCFHFPEIKLLEL 74
           ++I + +I+ L  L+ LS+ V P D+RW    K +V E+C+L  L  L F+ P++ LL  
Sbjct: 375 RVIPNNVIANLLQLEELSMDVNPDDERWNVTAKDIVKEICSLNHLEILKFYLPKVILLND 434

Query: 75  FLQRCVAWNAQCLTEFRIVVGHDIKNIVSRVPDAVAFDYNKQGKCLRFINGENIPDAVLQ 134
            +   +      L  +R  +G  +K I+SR+P  V   + ++ +CL+++NGE +P  V +
Sbjct: 435 LMSTGLN---SSLVHYRFTIGSYMKRIISRLPIEVLVKFEEEERCLKYVNGEGVPTEVKE 491

Query: 135 ILACCTAFYLDNHLHINSLSDFGVRSINGLKFCIISECPKIETVVDGKELTTVIFPSLEN 194
           +L   TA +L  HL + SLS+FG+ ++  LKFC++ EC +I T+VD      ++  SLE 
Sbjct: 492 LLQHTTALFLHRHLTLVSLSEFGIENMKNLKFCVLGECDEIGTIVDANN-RDLVLESLEY 550

Query: 195 LSIHHLWNLTHICEGSVPNGSFARLRILSVHACPKLKFVFSSFMIHFMSNLEDLTVEDCP 254
           LS++++ NL  I    +   S + L++L++++CP+L  + +  ++  + NLE+L VEDCP
Sbjct: 551 LSLYYMKNLRSIWREPLGWNSLSNLKVLALYSCPQLTTILTIRVLKNVYNLEELLVEDCP 610

Query: 255 AIE-----EIISEGEIIDSGCTALPRLKKLTLHYLPGLVTIWSSAW--PSLEYVSFYDCP 307
            I      E+ +E   +  GC  LP LKK++LHY+P LVTI+      PSLE++S YDCP
Sbjct: 611 KINSILTHEVAAEDLPLLMGC--LPNLKKISLHYMPKLVTIFGGILIAPSLEWLSLYDCP 668

Query: 308 RLKNIG---LGSNLKHSVMEIKAEKSWWDDLEWEDTE 341
            LK++    +GSN   ++  I  E  WW  L WE +E
Sbjct: 669 NLKSLSHEEVGSN---NLKLIIGEADWWSTLRWEKSE 702

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297739483|emb|CBI29665.3| unnamed protein product [Vitis vinifera]

 Score =  218 bits (555), Expect = 3e-54,   Method: Compositional matrix adjust.
 Identities = 122/358 (34%), Positives = 195/358 (54%), Gaps = 17/358 (4%)

Query: 16   LISSGIISRLHALKTLSIVVYPGDKRWYKDVKSVVLEVCNLTELSSLCFHFPEIKLLELF 75
            LI   +I +L  L+ L I V P D++W   ++ +V EVC+L +L +L  + P++  L+ F
Sbjct: 651  LIPRNVIQQLFQLQELRIDVNPDDEQWNATMEDIVKEVCSLKQLEALKIYLPQVAPLDHF 710

Query: 76   LQRCVAWNAQCLTEFRIVVGHDIKNIVSRVPDAVAFDYNKQGKCLRFINGENIPDAVLQI 135
            ++   +     L  FR VVG     I+SR+P+ +A  +  Q + L+++NGE IP  + ++
Sbjct: 711  MKNGTSSVYTSLVHFRFVVGSHHSRIISRLPNELAIKFELQARSLKYVNGEGIPSQIKEV 770

Query: 136  LACCTAFYLDNHLHINSLSDFGVRSINGLKFCIISECPKIETVVDGKE-----------L 184
            L  CTA +LD HL +  LS+FG+ ++  L+FC++ EC KIET+VDG E            
Sbjct: 771  LQHCTALFLDRHLTLTKLSEFGIGNMKKLEFCVLGECYKIETIVDGAENCKQREDDGDVY 830

Query: 185  TTVIFPSLENLSIHHLWNLTHICEGSVPNGSFARLRILSVHACPKLKFVFSSFMIHFMSN 244
               I  SL+ L +H++ NL  I +G V  G  + L+ L++H CP+L  +F+  ++  +++
Sbjct: 831  GENILGSLQFLRLHYMKNLVSIWKGPVWRGCLSSLKSLALHECPQLTTIFTLGLLENLNS 890

Query: 245  LEDLTVEDCPAIEEIISEGEIIDSGC----TALPRLKKLTLHYLPGLVTIWSS--AWPSL 298
            LE+L  E CP I  I++  +  +       T LP L+K++LHY+P LV I S     P L
Sbjct: 891  LEELVAEWCPEINSIVTLEDPAEHRPFPLRTYLPNLRKISLHYVPKLVNISSGLRIAPKL 950

Query: 299  EYVSFYDCPRLKNIGLGSNLKHSVMEIKAEKSWWDDLEWEDTELQLHLQNCFTTISED 356
            E++SFY+CP L+ +       H +  I  E  WW  L+           N F  I  D
Sbjct: 951  EWMSFYNCPLLETLSDMEVCCHGIKVIIGEADWWSTLKRSSYFGLAQWHNVFVPIKSD 1008

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147804938|emb|CAN60375.1| hypothetical protein VITISV_001216 [Vitis vinifera]

 Score =  215 bits (548), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 121/335 (36%), Positives = 194/335 (57%), Gaps = 28/335 (8%)

Query: 16  LISSGIISRLHALKTLSIVVYPGDKRWYKDVKSVVLEVCNLTELSSLCFHFPEIKLLELF 75
           +I   +I +L   + LSI V P D+RW   VK+++ EVC+L EL  L  + PEI LL  F
Sbjct: 492 IIPHNVIGKLLQXEELSIDVNPDDERWNGTVKNIIKEVCSLKELKVLKLYLPEIVLLNDF 551

Query: 76  LQRCVAWNA---QCLTEFRIVVGHDIKNIVSRVPDAVAFDYNKQGKCLRFINGENIPDAV 132
           +     WN      L+ F  +VG  +K I+SR+P    F++ KQ +CL+++NGE+IP  +
Sbjct: 552 M-----WNEIPFLSLSRFSFIVGGHLKRIISRLPCETTFEFKKQKRCLKYVNGEDIPVEI 606

Query: 133 LQILACCTAFYLDNHLHINSLSDFGVRSINGLKFCIISECPKIETVVDGKELTT------ 186
            ++L   TA +LD HL +  LS+FG+ ++  L+ C++ EC +I+T+VDG E+        
Sbjct: 607 KEVLQHATALFLDRHLTLTKLSEFGIENMKKLEVCVLGECKEIQTLVDGAEINKQEDNAR 666

Query: 187 -----VIFPSLENLSIHHLWNLTHICEGSVPNGSFARLRILSVHACPKLKFVFSSFMIHF 241
                 +  SL+ LSIH++ NL    +G V  G  + L+ L++H CP+L  +F+  ++  
Sbjct: 667 DVNEDTVLGSLQYLSIHYMKNLRSFWKGPVQKGCLSSLKSLALHTCPQLTTIFTLDLLEN 726

Query: 242 MSNLEDLTVEDCPAIEEIISE----GEIIDSGCTALPRLKKLTLHYLPGLVTIWSS--AW 295
           ++ LE+L +E+CP I  +++      EI       LP+LKK++LHY+  LV+I S     
Sbjct: 727 LNILEELVIENCPKISSLVTHELPAEEIQLCSIEHLPKLKKISLHYMHELVSISSGLCIA 786

Query: 296 PSLEYVSFYDCPRLKNIGLGSNLKHSVMEIKAEKS 330
           P +E++SFY CP LK +   S +  S   +K E+S
Sbjct: 787 PKVEWMSFYGCPNLKTL---SPMDVSTSALKQERS 818

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147853686|emb|CAN81723.1| hypothetical protein VITISV_010483 [Vitis vinifera]

 Score =  211 bits (537), Expect = 4e-52,   Method: Compositional matrix adjust.
 Identities = 125/350 (35%), Positives = 197/350 (56%), Gaps = 15/350 (4%)

Query: 15  QLISSGIISRLHALKTLSIVVYPGDKRWYKDVKSVVLEVCNLTELSSLCFHFPEIKLLEL 74
           ++I    IS L  LK LSI V P ++ W   V  +V E+C+L +L +L  + PE+ LL  
Sbjct: 542 RIIPQNWISNLLQLKELSIDVNPNNQGWNVIVNDIVKEICSLAKLEALKLYLPEVVLLND 601

Query: 75  FLQRCVAWNAQCLTEFRIVVGHDIKNIVSRVPDAVAFDYNKQGKCLRFINGENIPDAVLQ 134
                   +   L  FR  VG   + I+SR+P   A    ++ +CL+++NG+ +   + Q
Sbjct: 602 LRN-----SLSSLKHFRFTVGRHEQRIISRLPLEAAVKLEEEERCLKYVNGKGVQIEIKQ 656

Query: 135 ILACCTAFYLDNHLHINSLSDFGVRSINGLKFCIISECPKIETVVDGKELTTVIFPSLEN 194
            L   T  +LD HL + SLS FG+ ++  LKFC++ EC +I+T+VD      V+  SL+ 
Sbjct: 657 ALQHVTTLFLDRHLTLTSLSKFGIGNMENLKFCLLGECNEIQTIVDAGNGGDVLLGSLKY 716

Query: 195 LSIHHLWNLTHICEGSVPNGSFARLRILSVHACPKLKFVFSSFMIHFMSNLEDLTVEDCP 254
           L++H++ NL  I +G +  GS   L+ L ++ CP+L  +F+  ++  + NLE+L VEDCP
Sbjct: 717 LNLHYMKNLRSIWKGPLCQGSLFSLKSLVLYTCPQLTTIFTLNLLKNLRNLEELVVEDCP 776

Query: 255 AIEEIISE---GEIIDSGCTALPRLKKLTLHYLPGLVTIWSSA--WPSLEYVSFYDCPRL 309
            I  I++     E +      LP LKK++LHYLP L++I S     P LE++S YDCP  
Sbjct: 777 EINSIVTHDVPAEDLPLWIYYLPNLKKISLHYLPKLISISSGVPIAPMLEWLSVYDCPSF 836

Query: 310 KNIGLGSNLKHSVMEIKAEKSWWDDLEWEDTELQLHLQN---CFTTISED 356
           + +GL   +++ +  I  E+ WW+ L+W+ +E QL L N    F  I  D
Sbjct: 837 RTLGLHGGIRN-LKVIIGERDWWNALQWKKSE-QLWLSNRPSIFVPIERD 884

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147798654|emb|CAN63327.1| hypothetical protein VITISV_038474 [Vitis vinifera]

 Score =  209 bits (532), Expect = 1e-51,   Method: Compositional matrix adjust.
 Identities = 124/359 (34%), Positives = 194/359 (54%), Gaps = 21/359 (5%)

Query: 16  LISSGIISRLHALKTLSIVVYPGDKRWYKDVKSVVLEVCNLTELSSLCFHFPEIKLLELF 75
           +I   ++S L  L+ L I V P D+RW   +K +V EVC+   L +L  + PE+ L+  F
Sbjct: 492 MIPHNMLSGLTQLEELGIHVNPDDERWDVTMKDIVKEVCSFKHLETLKLYLPEVILVNEF 551

Query: 76  LQRCVAWNAQCLTEFRIVVGHDIKNIVSRVPDAVAFDYNKQGKCLRFINGENIPDAVLQI 135
           +    +     L  FR ++G   K  VSR+P  +   + +Q +CL+++NGE IP  + +I
Sbjct: 552 MGSGTSSRNLSLMNFRFIIGSHRKRFVSRLPQEIVVKFEQQXRCLKYVNGEGIPMEIKKI 611

Query: 136 LACCTAFYLDNHLHINSLSDFGVRSINGLKFCIISECPKIETVVDGKE-----------L 184
           L   TA  L+ HL +  LS+FG+ +   L FC++ EC KI+T+VDG E            
Sbjct: 612 LEHATALLLERHLTLTKLSEFGIENTMKLXFCVLGECSKIQTLVDGAENYRQXDDYGYVH 671

Query: 185 TTVIFPSLENLSIHHLWNLTHICEGSVPNGSFARLRILSVHACPKLKFVFSSFMIHFMSN 244
             +I  SL  L +H++ NL  I +G +  G  +RL  L ++ACP+LK  F+  ++  ++ 
Sbjct: 672 QKIILGSLRYLRLHYMKNLGSIWKGPIWEGCLSRLESLELYACPQLKTTFTLALLENLNX 731

Query: 245 LEDLTVEDCPAIEEIISEGEIIDSGC--TALPRLKKLTLHYLPGLVTIWSS--AWPSLEY 300
           L++L VE+CP I  +++     +     T LP LKK++LHYLP L +  S     P LE+
Sbjct: 732 LKELVVENCPKINSLVTHEVPAEDMLLKTYLPXLKKISLHYLPKLASXSSGLHIAPHLEW 791

Query: 301 VSFYDCPR---LKNIGLGSNLKHSVMEIKAEKSWWDDLEWEDTELQLHLQNCFTTISED 356
           +SFY+CP    L N+ + SN   ++  I  E  WW  L+W    L+  L + F  I  D
Sbjct: 792 MSFYNCPSIEALSNMEVSSN---NLKVIIGEVDWWRALKWRKPVLRRKLDSIFVPIKSD 847

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147853651|emb|CAN82340.1| hypothetical protein VITISV_036992 [Vitis vinifera]

 Score =  200 bits (509), Expect = 8e-49,   Method: Compositional matrix adjust.
 Identities = 128/378 (33%), Positives = 206/378 (54%), Gaps = 25/378 (6%)

Query: 1   MDLSCNVEYVK---MPPQLISSGIISRLHALKTLSIVVYPGDKRWYKDVKSVVLEVCNLT 57
           M+L   V Y++       +I   +IS L  L+ LSI V P D+RW   VK +V EVC L 
Sbjct: 523 MELPPEVGYLRNLESSNTMIPQNVISELSQLEELSIHVNPDDERWDVIVKYIVKEVCTLK 582

Query: 58  ELSSLCFHFPEIKLLELFLQRCVAWNAQCLTEFRIVVGHDIKNIVSRVPDAVAFDYNKQG 117
            L +L  + PE++L+  F+    +     L  F  ++G   K  VSR+P  +A  + +Q 
Sbjct: 583 HLETLKLYLPEVRLVNDFMGCGNSLINLSLMNFEFIIGSHHKRFVSRLPQEIANRFEQQE 642

Query: 118 KCLRFINGENIPDAVLQILACCTAFYLDNHLHINSLSDFGVRSINGLKFCIISECPKIET 177
           +CL+++NGE +P  + ++L   T   L+ HL +  LS+FG+ +I  L+FC++ EC KI+T
Sbjct: 643 RCLKYVNGEGVPMEIKEVLHHATTLLLERHLTLTKLSEFGIENIMKLEFCVLGECSKIQT 702

Query: 178 VVDGKEL-----------TTVIFPSLENLSIHHLWNLTHICEGSVPNGSFARLRILSVHA 226
           +VDG E              +I  SL+ L +H++ NL  I +G +     + L+ L ++A
Sbjct: 703 LVDGAETFRQGGDDGDVHQEIILGSLQYLRLHYMKNLDSIWKGPIWKDCLSSLKSLELYA 762

Query: 227 CPKLKFVFSSFMIHFMSNLEDLTVEDCPAIEEIIS---EGEIIDSGCTALPRLKKLTLHY 283
           CP+L   F+  ++  +  LE+L VE+CP I  +++       +    T LP+LKK++LHY
Sbjct: 763 CPQLTTTFTLGLLENLDLLEELVVENCPKINSLVTYVPAEHTLLRFKTYLPKLKKISLHY 822

Query: 284 LPGLVTIWSSAW--PSLEYVSFYDCPR---LKNIGLGSNLKHSVMEIKAEKSWWDDLEWE 338
           L  L +I S     P LE++SFY+CP    L N+ + SN   ++  I  E  WW  L+W+
Sbjct: 823 LRKLASISSGLRIAPDLEWMSFYNCPSIEALSNMEVSSN---NLKVIIGEADWWRALKWQ 879

Query: 339 DTELQLHLQNCFTTISED 356
            + L+ +L + F  I  D
Sbjct: 880 TSVLRSNLDSIFVPIKSD 897

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	358
TAIR|locus:2136447	985	AT4G27190 [Arabidopsis thalian	0.885	0.321	0.236	1.9e-09
TAIR|locus:2005517	909	RPS2 "RESISTANT TO P. SYRINGAE	0.544	0.214	0.267	1.5e-07
TAIR|locus:2131689	919	AT4G27220 [Arabidopsis thalian	0.421	0.164	0.283	0.00028

TAIR|locus:2136447 AT4G27190 [Arabidopsis thaliana (taxid:3702)]

 Score = 170 (64.9 bits), Expect = 1.9e-09, P = 1.9e-09
 Identities = 85/359 (23%), Positives = 150/359 (41%)

Query:    17 ISSGIISRLHALKTLSIVVYPGDKRWY-----KDVKSVVLEVCNLTELSSLCFHFPEIKL 71
             I + ++SRL +L+TL +       RW      +  ++ V E+  L  L  L         
Sbjct:   636 IPARVVSRLSSLETLDMT--SSHYRWSVQGETQKGQATVEEIGCLQRLQVLSIRLHSSPF 693

Query:    72 LELFLQRCVAWNAQCLTEFRIVVGHDIKNIVSRVPDAVAFDYNKQGKCLRFINGENIPDA 131
             L   L +   W  + L +F++VVG      + R        ++K+   +  +N   +  +
Sbjct:   694 L---LNKRNTWIKR-LKKFQLVVG---SRYILRTR------HDKRRLTISHLNVSQV--S 738

Query:   132 VLQILACCTAFYLDNHLHINSL-----SDF-GVRSINGLKF--CIISECPKIETVVDG-- 181
             +  +LA  T+  L++   I ++     SD  G +++  L     II+    +E V     
Sbjct:   739 IGWLLAYTTSLALNHCQGIEAMMKKLVSDNKGFKNLKSLTIENVIINTNSWVEMVSTNTS 798

Query:   182 KELTTVI--FPSLENLSIHHLWNLTHICEGSVPNG-SFARLRILSVHACPKLKFVFSSFM 238
             K+ + ++   P+LE L +  + +L    E     G     L+I+ +  C KL+ +     
Sbjct:   799 KQSSDILDLLPNLEELHLRRV-DLETFSELQTHLGLKLETLKIIEITMCRKLRTLLDKRN 857

Query:   239 IHFMSNLEDLTVEDCPAXXXXXXXXXXXDSGCTALPRLKKLTLHYLPGLVTI--WSSAWP 296
                + NLE++ +  C +                 +P L+ L L  LP LV+I  W   W 
Sbjct:   858 FLTIPNLEEIEISYCDSLQNLHEALLYHQP---FVPNLRVLKLRNLPNLVSICNWGEVWE 914

Query:   297 SLEYVSFYDCPRLKNIGLGSNLKHSVMEIKAEKSWWDDLEWEDTELQLHLQNCFTTISE 355
              LE V    C +L  + + S     + +IK E SWW+ LEW+D      +Q  F  + E
Sbjct:   915 CLEQVEVIHCNQLNCLPISSTCGR-IKKIKGELSWWERLEWDDPSALTTVQPFFNPVRE 972

GO:0000166 "nucleotide binding" evidence=IEA

GO:0005739 "mitochondrion" evidence=ISM

GO:0006952 "defense response" evidence=IEA;ISS

GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA

GO:0043531 "ADP binding" evidence=IEA

TAIR|locus:2005517 RPS2 "RESISTANT TO P. SYRINGAE 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 158 (60.7 bits), Expect = 1.5e-07, Sum P(2) = 1.5e-07
 Identities = 56/209 (26%), Positives = 90/209 (43%)

Query:   147 HLHI---NSLSDFGVRSING----LKFCIISECPKIETVVDGKELTTVIFPSLENLSIHH 199
             HLH+   N L  F + S+      L+   I  C  +E +V   +      PSLE L++H 
Sbjct:   695 HLHVEECNELLYFNLPSLTNHGRNLRRLSIKSCHDLEYLVTPADFENDWLPSLEVLTLHS 754

Query:   200 LWNLTHICEGSVPNGSFARLRILSVHACPKLKFVFSSFMIHFMSNLEDLTVEDCPAXXXX 259
             L NLT +   SV       +R +++  C KLK V  S+ +  +  LE + + DC      
Sbjct:   755 LHNLTRVWGNSVSQDCLRNIRCINISHCNKLKNV--SW-VQKLPKLEVIELFDCREIEEL 811

Query:   260 XXXXXXXD-SGCTALPRLKKLTLHYLPGLVTIWSS--AWPSLEYVSFYDCPRLKNIGLGS 316
                         T  P LK L    LP L +I  S  ++  +E +   +CPR+K +    
Sbjct:   812 ISEHESPSVEDPTLFPSLKTLRTRDLPELNSILPSRFSFQKVETLVITNCPRVKKLPFQE 871

Query:   317 N-LKHSVMEIKAEKSWWDDLEWEDTELQL 344
                + ++  +  E+ WW  LE +    +L
Sbjct:   872 RRTQMNLPTVYCEEKWWKALEKDQPNEEL 900

GO:0000166 "nucleotide binding" evidence=IEA

GO:0006952 "defense response" evidence=ISS;TAS

GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA

GO:0043531 "ADP binding" evidence=IEA

GO:0009626 "plant-type hypersensitive response" evidence=IMP

GO:0016045 "detection of bacterium" evidence=RCA;IMP

GO:0005515 "protein binding" evidence=IPI

GO:0005886 "plasma membrane" evidence=IDA

GO:0042742 "defense response to bacterium" evidence=RCA;IMP

GO:0000165 "MAPK cascade" evidence=RCA

GO:0006612 "protein targeting to membrane" evidence=RCA

GO:0009595 "detection of biotic stimulus" evidence=RCA

GO:0009617 "response to bacterium" evidence=RCA

GO:0009697 "salicylic acid biosynthetic process" evidence=RCA

GO:0009862 "systemic acquired resistance, salicylic acid mediated signaling pathway" evidence=RCA

GO:0009863 "salicylic acid mediated signaling pathway" evidence=RCA

GO:0009867 "jasmonic acid mediated signaling pathway" evidence=RCA

GO:0009963 "positive regulation of flavonoid biosynthetic process" evidence=RCA

GO:0010200 "response to chitin" evidence=RCA

GO:0010310 "regulation of hydrogen peroxide metabolic process" evidence=RCA

GO:0010363 "regulation of plant-type hypersensitive response" evidence=RCA

GO:0031347 "regulation of defense response" evidence=RCA

GO:0031348 "negative regulation of defense response" evidence=RCA

GO:0043069 "negative regulation of programmed cell death" evidence=RCA

GO:0043900 "regulation of multi-organism process" evidence=RCA

GO:0045087 "innate immune response" evidence=RCA

GO:0050776 "regulation of immune response" evidence=RCA

GO:0050832 "defense response to fungus" evidence=RCA

GO:0051707 "response to other organism" evidence=RCA

TAIR|locus:2131689 AT4G27220 [Arabidopsis thaliana (taxid:3702)]

 Score = 123 (48.4 bits), Expect = 0.00028, P = 0.00028
 Identities = 45/159 (28%), Positives = 74/159 (46%)

Query:   160 SINGLKFCIISECPKIETVVDGKELTTVIFPSLENLSIHHLWNLTHICEGSVPNGS-FAR 218
             S   +K   I   P + ++  G E    +FP+LE LS+ ++ NL  I E +   G    +
Sbjct:   739 SFVAMKALSIHYFPSL-SLASGCESQLDLFPNLEELSLDNV-NLESIGELNGFLGMRLQK 796

Query:   219 LRILSVHACPKLKFVFSS-FMIHFMSNLEDLTVEDCPAXXXXXXXXXXXDSGC--TALPR 275
             L++L V  C +LK +FS   +   + NL+++ V  C                C  + LP+
Sbjct:   797 LKLLQVSGCRQLKRLFSDQILAGTLPNLQEIKVVSCLRLEELFNFSSVPVDFCAESLLPK 856

Query:   276 LKKLTLHYLPGLVTIWSS--AWPSLEYVSFYDCPRLKNI 312
             L  + L YLP L ++ +      SLE++    C  LKN+
Sbjct:   857 LTVIKLKYLPQLRSLCNDRVVLESLEHLEVESCESLKNL 895


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.324   0.139   0.444    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      358       347   0.00098  116 3  11 22  0.48    33
                                                     33  0.45    37


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  3
  No. of states in DFA:  626 (67 KB)
  Total size of DFA:  272 KB (2141 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  27.83u 0.12s 27.95t   Elapsed:  00:00:01
  Total cpu time:  27.83u 0.12s 27.95t   Elapsed:  00:00:01
  Start:  Tue May 21 05:08:39 2013   End:  Tue May 21 05:08:40 2013

GO:0005634 "nucleus" evidence=ISM

GO:0006952 "defense response" evidence=IEA;ISS

GO:0043531 "ADP binding" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	358
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	99.71
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	99.69
PLN03210	1153	Resistant to P. syringae 6; Provisional	99.68
PLN03210	1153	Resistant to P. syringae 6; Provisional	99.67
KOG4658	889	consensus Apoptotic ATPase [Signal transduction me	99.47
KOG4194	873	consensus Membrane glycoprotein LIG-1 [Signal tran	99.35
KOG0444	1255	consensus Cytoskeletal regulator Flightless-I (con	99.29
KOG0444	1255	consensus Cytoskeletal regulator Flightless-I (con	99.28
KOG4194	873	consensus Membrane glycoprotein LIG-1 [Signal tran	99.19
KOG0472	565	consensus Leucine-rich repeat protein [Function un	98.92
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	98.78
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	98.77
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	98.76
KOG0472	565	consensus Leucine-rich repeat protein [Function un	98.75
KOG0618	1081	consensus Serine/threonine phosphatase 2C containi	98.71
KOG0618	1081	consensus Serine/threonine phosphatase 2C containi	98.66
KOG4658	889	consensus Apoptotic ATPase [Signal transduction me	98.63
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	98.54
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	98.49
KOG0617	264	consensus Ras suppressor protein (contains leucine	98.44
KOG0617	264	consensus Ras suppressor protein (contains leucine	98.41
KOG4237	498	consensus Extracellular matrix protein slit, conta	98.35
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	98.16
KOG3207	505	consensus Beta-tubulin folding cofactor E [Posttra	97.99
KOG2120	419	consensus SCF ubiquitin ligase, Skp2 component [Po	97.93
KOG2120	419	consensus SCF ubiquitin ligase, Skp2 component [Po	97.91
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	97.88
PRK15386	426	type III secretion protein GogB; Provisional	97.84
KOG4341	483	consensus F-box protein containing LRR [General fu	97.82
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	97.79
PRK15386	426	type III secretion protein GogB; Provisional	97.74
KOG1259	490	consensus Nischarin, modulator of integrin alpha5	97.67
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	97.67
KOG3207	505	consensus Beta-tubulin folding cofactor E [Posttra	97.61
KOG4341	483	consensus F-box protein containing LRR [General fu	97.48
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	97.46
KOG1947	482	consensus Leucine rich repeat proteins, some prote	96.99
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	96.78
KOG1909	382	consensus Ran GTPase-activating protein [RNA proce	96.7
KOG4237	498	consensus Extracellular matrix protein slit, conta	96.55
KOG1859	1096	consensus Leucine-rich repeat proteins [General fu	96.48
KOG1259	490	consensus Nischarin, modulator of integrin alpha5	96.35
PLN03150	623	hypothetical protein; Provisional	96.32
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	96.3
PLN03150	623	hypothetical protein; Provisional	96.27
KOG2982	418	consensus Uncharacterized conserved protein [Funct	96.23
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	96.11
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	95.99
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	95.98
KOG0532	722	consensus Leucine-rich repeat (LRR) protein, conta	95.83
KOG3864	221	consensus Uncharacterized conserved protein [Funct	95.82
KOG1947	482	consensus Leucine rich repeat proteins, some prote	95.5
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	95.23
PF13504	17	LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OO	94.35
KOG3864	221	consensus Uncharacterized conserved protein [Funct	93.89
KOG1644	233	consensus U2-associated snRNP A' protein [RNA proc	93.63
KOG0532	722	consensus Leucine-rich repeat (LRR) protein, conta	93.63
KOG2982	418	consensus Uncharacterized conserved protein [Funct	93.57
PF00560	22	LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le	92.67
KOG1909	382	consensus Ran GTPase-activating protein [RNA proce	91.94
KOG1859	1096	consensus Leucine-rich repeat proteins [General fu	91.53
PF13306	129	LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_	91.3
KOG1644	233	consensus U2-associated snRNP A' protein [RNA proc	91.18
KOG2739	260	consensus Leucine-rich acidic nuclear protein [Cel	90.95
KOG0531	414	consensus Protein phosphatase 1, regulatory subuni	88.02
KOG2123	388	consensus Uncharacterized conserved protein [Funct	87.32
KOG0531	414	consensus Protein phosphatase 1, regulatory subuni	86.13
KOG2123	388	consensus Uncharacterized conserved protein [Funct	85.11
KOG2739	260	consensus Leucine-rich acidic nuclear protein [Cel	82.75
smart00367	26	LRR_CC Leucine-rich repeat - CC (cysteine-containi	82.24
PF13306	129	LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_	80.4

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=99.71  E-value=8.5e-17  Score=168.96  Aligned_cols=174  Identities=11%  Similarity=0.021  Sum_probs=79.5

Q ss_pred             ccCccEEEeccCCCCCccCcccccCccCCcEEEeecCCCceEecCCCCccccCCCccceeecccccccccccccccCCCc
Q 039808          136 LACCTAFYLDNHLHINSLSDFGVRSINGLKFCIISECPKIETVVDGKELTTVIFPSLENLSIHHLWNLTHICEGSVPNGS  215 (358)
Q Consensus       136 l~~L~~L~l~~~~~~~~l~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~  215 (358)
                      +++|+.|++.++.-...++. .++++++|++|++++|.....++..    ...+++|++|+++++.....+   +...+.
T Consensus       235 l~~L~~L~L~~n~l~~~~p~-~l~~l~~L~~L~L~~n~l~~~~p~~----l~~l~~L~~L~Ls~n~l~~~~---p~~~~~  306 (968)
T PLN00113        235 LTSLNHLDLVYNNLTGPIPS-SLGNLKNLQYLFLYQNKLSGPIPPS----IFSLQKLISLDLSDNSLSGEI---PELVIQ  306 (968)
T ss_pred             CCCCCEEECcCceeccccCh-hHhCCCCCCEEECcCCeeeccCchh----HhhccCcCEEECcCCeeccCC---ChhHcC
Confidence            44445554444421112222 3444445555555444322222111    233445555555544322222   111233


Q ss_pred             CccccEEeEecCCCccccCchhhhccCCCccEEEEecCCccccccccccccccccccCCCcceeccccccccccccCC--
Q 039808          216 FARLRILSVHACPKLKFVFSSFMIHFMSNLEDLTVEDCPAIEEIISEGEIIDSGCTALPRLKKLTLHYLPGLVTIWSS--  293 (358)
Q Consensus       216 ~~~L~~L~l~~c~~l~~l~~~~~l~~l~~L~~L~i~~c~~l~~i~~~~~~~~~~~~~l~~L~~L~l~~c~~L~~~~~~--  293 (358)
                      +++|++|++.++...... + ..+..+++|+.|++++|.-...++       ...+.+++|+.|+++++.--..++..  
T Consensus       307 l~~L~~L~l~~n~~~~~~-~-~~~~~l~~L~~L~L~~n~l~~~~p-------~~l~~~~~L~~L~Ls~n~l~~~~p~~~~  377 (968)
T PLN00113        307 LQNLEILHLFSNNFTGKI-P-VALTSLPRLQVLQLWSNKFSGEIP-------KNLGKHNNLTVLDLSTNNLTGEIPEGLC  377 (968)
T ss_pred             CCCCcEEECCCCccCCcC-C-hhHhcCCCCCEEECcCCCCcCcCC-------hHHhCCCCCcEEECCCCeeEeeCChhHh
Confidence            455555555554322211 1 223455555555555553332333       23455566666666555322233333  


Q ss_pred             CCCCccEEeeeCCcCCCccCCCCCCCCCeeEEE
Q 039808          294 AWPSLEYVSFYDCPRLKNIGLGSNLKHSVMEIK  326 (358)
Q Consensus       294 ~~~~L~~L~i~~C~~L~~lP~~~~~~~~L~~~~  326 (358)
                      .+++|+.|++.+|+....+|.....+++|+.+.
T Consensus       378 ~~~~L~~L~l~~n~l~~~~p~~~~~~~~L~~L~  410 (968)
T PLN00113        378 SSGNLFKLILFSNSLEGEIPKSLGACRSLRRVR  410 (968)
T ss_pred             CcCCCCEEECcCCEecccCCHHHhCCCCCCEEE
Confidence            556667777766665555666555666666654

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=99.69  E-value=1.5e-16  Score=167.16  Aligned_cols=256  Identities=14%  Similarity=0.046  Sum_probs=140.7

Q ss_pred             hhhhcCCCCCceEEEEccCch-hHHHHHhhhccccccccceEEEEEeCccccccccCCcccccccccCCceEEeeCCC--
Q 039808           50 VLEVCNLTELSSLCFHFPEIK-LLELFLQRCVAWNAQCLTEFRIVVGHDIKNIVSRVPDAVAFDYNKQGKCLRFINGE--  126 (358)
Q Consensus        50 ~~~l~~l~~L~~L~~~~~~l~-~l~~~~~~~~~~~~~~L~~l~i~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~--  126 (358)
                      +..++++++|++|++..+.+. .+|..++     .+++|+.+.+......    ...|.  .+..+.+|+.|.+.++.  
T Consensus       181 p~~~~~l~~L~~L~L~~n~l~~~~p~~l~-----~l~~L~~L~L~~n~l~----~~~p~--~l~~l~~L~~L~L~~n~l~  249 (968)
T PLN00113        181 PNSLTNLTSLEFLTLASNQLVGQIPRELG-----QMKSLKWIYLGYNNLS----GEIPY--EIGGLTSLNHLDLVYNNLT  249 (968)
T ss_pred             ChhhhhCcCCCeeeccCCCCcCcCChHHc-----CcCCccEEECcCCccC----CcCCh--hHhcCCCCCEEECcCceec
Confidence            344556666666666544432 2333323     3455555544211100    12232  45556678888887664  


Q ss_pred             CChHHHHhhccCccEEEeccCCCCCccCcccccCccCCcEEEeecCCCceEecCCCCccccCCCccceeecccccccccc
Q 039808          127 NIPDAVLQILACCTAFYLDNHLHINSLSDFGVRSINGLKFCIISECPKIETVVDGKELTTVIFPSLENLSIHHLWNLTHI  206 (358)
Q Consensus       127 ~~~~~~~~~l~~L~~L~l~~~~~~~~l~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~  206 (358)
                      +..+.....+++|+.|++.++.-...++. .+.++++|++|++++|.....++..    ...+++|+.|++.++...+.+
T Consensus       250 ~~~p~~l~~l~~L~~L~L~~n~l~~~~p~-~l~~l~~L~~L~Ls~n~l~~~~p~~----~~~l~~L~~L~l~~n~~~~~~  324 (968)
T PLN00113        250 GPIPSSLGNLKNLQYLFLYQNKLSGPIPP-SIFSLQKLISLDLSDNSLSGEIPEL----VIQLQNLEILHLFSNNFTGKI  324 (968)
T ss_pred             cccChhHhCCCCCCEEECcCCeeeccCch-hHhhccCcCEEECcCCeeccCCChh----HcCCCCCcEEECCCCccCCcC
Confidence            22233445678888888887732233433 4777888888888877544333332    445677888887776543332


Q ss_pred             cccccCCCcCccccEEeEecCCCccccCchhhhccCCCccEEEEecCCcccccccc-----------------ccccccc
Q 039808          207 CEGSVPNGSFARLRILSVHACPKLKFVFSSFMIHFMSNLEDLTVEDCPAIEEIISE-----------------GEIIDSG  269 (358)
Q Consensus       207 ~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~l~~l~~L~~L~i~~c~~l~~i~~~-----------------~~~~~~~  269 (358)
                         +...+.+++|+.|++.+|.-...+ | ..++.+++|+.|+++++.-...++..                 .......
T Consensus       325 ---~~~~~~l~~L~~L~L~~n~l~~~~-p-~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~p~~  399 (968)
T PLN00113        325 ---PVALTSLPRLQVLQLWSNKFSGEI-P-KNLGKHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPKS  399 (968)
T ss_pred             ---ChhHhcCCCCCEEECcCCCCcCcC-C-hHHhCCCCCcEEECCCCeeEeeCChhHhCcCCCCEEECcCCEecccCCHH
Confidence               222345677777777776533222 2 24566777777777765432222200                 0001123


Q ss_pred             cccCCCcceeccccccccccccCC--CCCCccEEeeeCCcCCCccCCCCCCCCCeeEEE
Q 039808          270 CTALPRLKKLTLHYLPGLVTIWSS--AWPSLEYVSFYDCPRLKNIGLGSNLKHSVMEIK  326 (358)
Q Consensus       270 ~~~l~~L~~L~l~~c~~L~~~~~~--~~~~L~~L~i~~C~~L~~lP~~~~~~~~L~~~~  326 (358)
                      ...+++|+.|++.+|.--..++..  .+++|+.|++++|.--..+|.....+++|+.+.
T Consensus       400 ~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~  458 (968)
T PLN00113        400 LGACRSLRRVRLQDNSFSGELPSEFTKLPLVYFLDISNNNLQGRINSRKWDMPSLQMLS  458 (968)
T ss_pred             HhCCCCCCEEECcCCEeeeECChhHhcCCCCCEEECcCCcccCccChhhccCCCCcEEE
Confidence            455667777777666433334433  677777777777765555555555566666653

>PLN03210 Resistant to P

Probab=99.68  E-value=8.7e-16  Score=162.64  Aligned_cols=62  Identities=13%  Similarity=0.221  Sum_probs=33.1

Q ss_pred             cccCCceEEeeCCC---CChHHHHhhccCccEEEeccCCCCCccCcccccCccCCcEEEeecCCCceE
Q 039808          113 YNKQGKCLRFINGE---NIPDAVLQILACCTAFYLDNHLHINSLSDFGVRSINGLKFCIISECPKIET  177 (358)
Q Consensus       113 ~~~~L~~L~l~~~~---~~~~~~~~~l~~L~~L~l~~~~~~~~l~~~~l~~l~~L~~L~l~~~~~~~~  177 (358)
                      .+.+|+.|.+.++.   .+|. ....+++|+.|.+.+|..+..++..  .++++|+.|++++|..++.
T Consensus       655 ~l~~Le~L~L~~c~~L~~lp~-si~~L~~L~~L~L~~c~~L~~Lp~~--i~l~sL~~L~Lsgc~~L~~  719 (1153)
T PLN03210        655 MATNLETLKLSDCSSLVELPS-SIQYLNKLEDLDMSRCENLEILPTG--INLKSLYRLNLSGCSRLKS  719 (1153)
T ss_pred             cCCcccEEEecCCCCccccch-hhhccCCCCEEeCCCCCCcCccCCc--CCCCCCCEEeCCCCCCccc
Confidence            34456666665553   2222 2334566666666666555555531  2556666666666654433

syringae 6; Provisional

>PLN03210 Resistant to P

Probab=99.67  E-value=6.5e-16  Score=163.61  Aligned_cols=119  Identities=19%  Similarity=0.272  Sum_probs=83.9

Q ss_pred             CCccceeecccccccccccccccCCCcCccccEEeEecCCCccccCchhhhccCCCccEEEEecCCcccccccccc----
Q 039808          189 FPSLENLSIHHLWNLTHICEGSVPNGSFARLRILSVHACPKLKFVFSSFMIHFMSNLEDLTVEDCPAIEEIISEGE----  264 (358)
Q Consensus       189 l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~l~~l~~L~~L~i~~c~~l~~i~~~~~----  264 (358)
                      +++|++|.+++++.+..+   |...+.+++|+.|++.+|..++.++..   ..+++|+.|++++|..++.++....    
T Consensus       777 ~~sL~~L~Ls~n~~l~~l---P~si~~L~~L~~L~Ls~C~~L~~LP~~---~~L~sL~~L~Ls~c~~L~~~p~~~~nL~~  850 (1153)
T PLN03210        777 SPSLTRLFLSDIPSLVEL---PSSIQNLHKLEHLEIENCINLETLPTG---INLESLESLDLSGCSRLRTFPDISTNISD  850 (1153)
T ss_pred             cccchheeCCCCCCcccc---ChhhhCCCCCCEEECCCCCCcCeeCCC---CCccccCEEECCCCCccccccccccccCE
Confidence            357777777777766655   333556778888888888777776332   2577888888888777665542110    


Q ss_pred             ---------ccccccccCCCcceeccccccccccccCC--CCCCccEEeeeCCcCCCccC
Q 039808          265 ---------IIDSGCTALPRLKKLTLHYLPGLVTIWSS--AWPSLEYVSFYDCPRLKNIG  313 (358)
Q Consensus       265 ---------~~~~~~~~l~~L~~L~l~~c~~L~~~~~~--~~~~L~~L~i~~C~~L~~lP  313 (358)
                               ..+.+...+++|+.|++.+|++++.++..  .+++|+.+++++|++|+.++
T Consensus       851 L~Ls~n~i~~iP~si~~l~~L~~L~L~~C~~L~~l~~~~~~L~~L~~L~l~~C~~L~~~~  910 (1153)
T PLN03210        851 LNLSRTGIEEVPWWIEKFSNLSFLDMNGCNNLQRVSLNISKLKHLETVDFSDCGALTEAS  910 (1153)
T ss_pred             eECCCCCCccChHHHhcCCCCCEEECCCCCCcCccCcccccccCCCeeecCCCccccccc
Confidence                     01134566888999999899888888876  78888899999998887664

syringae 6; Provisional

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]

Probab=99.47  E-value=3e-14  Score=144.79  Aligned_cols=158  Identities=24%  Similarity=0.345  Sum_probs=94.2

Q ss_pred             cCCCccceeecccccccccc--cccccCCC-cCccccEEeEecCCCccccCchhhhccCCCccEEEEecCCccccccccc
Q 039808          187 VIFPSLENLSIHHLWNLTHI--CEGSVPNG-SFARLRILSVHACPKLKFVFSSFMIHFMSNLEDLTVEDCPAIEEIISEG  263 (358)
Q Consensus       187 ~~l~~L~~L~l~~~~~l~~~--~~~~~~~~-~~~~L~~L~l~~c~~l~~l~~~~~l~~l~~L~~L~i~~c~~l~~i~~~~  263 (358)
                      ..+.+|++|.|.+|...+..  |....... +|+++..+.+.+|+.....   .+....|+|+.|.+..|..++++....
T Consensus       714 ~~l~~L~~L~i~~~~~~e~~~~~~~~~~~~~~f~~l~~~~~~~~~~~r~l---~~~~f~~~L~~l~l~~~~~~e~~i~~~  790 (889)
T KOG4658|consen  714 GSLGNLEELSILDCGISEIVIEWEESLIVLLCFPNLSKVSILNCHMLRDL---TWLLFAPHLTSLSLVSCRLLEDIIPKL  790 (889)
T ss_pred             ccccCcceEEEEcCCCchhhcccccccchhhhHHHHHHHHhhcccccccc---chhhccCcccEEEEecccccccCCCHH
Confidence            34455555555555443221  11111111 2556666666666666554   233456677777777776666655332


Q ss_pred             cccc---cccccCCCccee-ccccccccccccCC--CCCCccEEeeeCCcCCCccCCCCCCC-CC---eeEEEecccccc
Q 039808          264 EIID---SGCTALPRLKKL-TLHYLPGLVTIWSS--AWPSLEYVSFYDCPRLKNIGLGSNLK-HS---VMEIKAEKSWWD  333 (358)
Q Consensus       264 ~~~~---~~~~~l~~L~~L-~l~~c~~L~~~~~~--~~~~L~~L~i~~C~~L~~lP~~~~~~-~~---L~~~~~~~~~~~  333 (358)
                      ....   .....|.++..+ .+.+.+.++.+.+.  .++.|+.+.+..||+++.+|...... ..   ......+.+|-+
T Consensus       791 k~~~~l~~~i~~f~~~~~l~~~~~l~~l~~i~~~~l~~~~l~~~~ve~~p~l~~~P~~~~~~i~~~~~~~~~~~~~~~~~  870 (889)
T KOG4658|consen  791 KALLELKELILPFNKLEGLRMLCSLGGLPQLYWLPLSFLKLEELIVEECPKLGKLPLLSTLTIVGCEEKLKEYPDGEWLE  870 (889)
T ss_pred             HHhhhcccEEecccccccceeeecCCCCceeEecccCccchhheehhcCcccccCccccccceeccccceeecCCcccee
Confidence            2111   113445556666 46666667766665  67779999999999999999886542 22   222334567899


Q ss_pred             cceecCcccccccc
Q 039808          334 DLEWEDTELQLHLQ  347 (358)
Q Consensus       334 ~l~~~~~~~~~~~~  347 (358)
                      .++|+++.+..++.
T Consensus       871 ~v~~~~~~~~~~~~  884 (889)
T KOG4658|consen  871 GVYWEDELTKLRFW  884 (889)
T ss_pred             eEEehhhhhhhhcc
Confidence            99999999888763

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]

Probab=99.35  E-value=1.4e-13  Score=128.75  Aligned_cols=184  Identities=16%  Similarity=0.144  Sum_probs=96.1

Q ss_pred             cccCCceEEeeCCC--CChHHHHhhccCccEEEeccCCCCCccCcccccCccCCcEEEeecCCCceEecCCCCccccCCC
Q 039808          113 YNKQGKCLRFINGE--NIPDAVLQILACCTAFYLDNHLHINSLSDFGVRSINGLKFCIISECPKIETVVDGKELTTVIFP  190 (358)
Q Consensus       113 ~~~~L~~L~l~~~~--~~~~~~~~~l~~L~~L~l~~~~~~~~l~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~  190 (358)
                      .+.+++.|++..++  .+.++.+-.+.+++.|++..+ .+..+...++.++..|+.|+++.+. ++.+.-+.   =...+
T Consensus       243 gL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N-~l~~vn~g~lfgLt~L~~L~lS~Na-I~rih~d~---Wsftq  317 (873)
T KOG4194|consen  243 GLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETN-RLQAVNEGWLFGLTSLEQLDLSYNA-IQRIHIDS---WSFTQ  317 (873)
T ss_pred             CchhhhhhhhhhcCcccccCcceeeecccceeecccc-hhhhhhcccccccchhhhhccchhh-hheeecch---hhhcc
Confidence            33344444443332  333444444556666666555 5555555555566666666666542 23221111   12335


Q ss_pred             ccceeecccccccccccccccCCCcCccccEEeEecCCCccccCchhhhccCCCccEEEEecCCcccccccccccccccc
Q 039808          191 SLENLSIHHLWNLTHICEGSVPNGSFARLRILSVHACPKLKFVFSSFMIHFMSNLEDLTVEDCPAIEEIISEGEIIDSGC  270 (358)
Q Consensus       191 ~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~l~~l~~L~~L~i~~c~~l~~i~~~~~~~~~~~  270 (358)
                      +|++|+++.. .++.+..  .++..+..|++|.++.. ++..+. ...+..+.+|++|+++.. .+.-..   ++....+
T Consensus       318 kL~~LdLs~N-~i~~l~~--~sf~~L~~Le~LnLs~N-si~~l~-e~af~~lssL~~LdLr~N-~ls~~I---EDaa~~f  388 (873)
T KOG4194|consen  318 KLKELDLSSN-RITRLDE--GSFRVLSQLEELNLSHN-SIDHLA-EGAFVGLSSLHKLDLRSN-ELSWCI---EDAAVAF  388 (873)
T ss_pred             cceeEecccc-ccccCCh--hHHHHHHHhhhhccccc-chHHHH-hhHHHHhhhhhhhcCcCC-eEEEEE---ecchhhh
Confidence            6666666542 2232211  11223455666666553 233321 123345667777766553 121111   1122456


Q ss_pred             ccCCCcceeccccccccccccCC---CCCCccEEeeeCCcCCCcc
Q 039808          271 TALPRLKKLTLHYLPGLVTIWSS---AWPSLEYVSFYDCPRLKNI  312 (358)
Q Consensus       271 ~~l~~L~~L~l~~c~~L~~~~~~---~~~~L~~L~i~~C~~L~~l  312 (358)
                      .++|+|++|.+.+. +++.++..   ++++||+|++.+.+ +.++
T Consensus       389 ~gl~~LrkL~l~gN-qlk~I~krAfsgl~~LE~LdL~~Na-iaSI  431 (873)
T KOG4194|consen  389 NGLPSLRKLRLTGN-QLKSIPKRAFSGLEALEHLDLGDNA-IASI  431 (873)
T ss_pred             ccchhhhheeecCc-eeeecchhhhccCcccceecCCCCc-ceee
Confidence            67888888888765 78888877   78888888888875 4444

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]

Probab=99.29  E-value=1.6e-13  Score=129.37  Aligned_cols=268  Identities=16%  Similarity=0.151  Sum_probs=183.2

Q ss_pred             cccceeccCCC---CccCCchhhcCccccEEEeeecCCCcceecccchhhh-hhcCCCCCceEEEEccCchhHHHHHhhh
Q 039808            4 SCNVEYVKMPP---QLISSGIISRLHALKTLSIVVYPGDKRWYKDVKSVVL-EVCNLTELSSLCFHFPEIKLLELFLQRC   79 (358)
Q Consensus         4 l~~L~~l~L~~---~~ip~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~-~l~~l~~L~~L~~~~~~l~~l~~~~~~~   79 (358)
                      |..|..+||+.   ++.|.++ -+-.++-+|++++ ++.       ..++. .+.+|..|-.|+++.+.+..+|.-+.  
T Consensus       102 l~dLt~lDLShNqL~EvP~~L-E~AKn~iVLNLS~-N~I-------etIPn~lfinLtDLLfLDLS~NrLe~LPPQ~R--  170 (1255)
T KOG0444|consen  102 LKDLTILDLSHNQLREVPTNL-EYAKNSIVLNLSY-NNI-------ETIPNSLFINLTDLLFLDLSNNRLEMLPPQIR--  170 (1255)
T ss_pred             cccceeeecchhhhhhcchhh-hhhcCcEEEEccc-Ccc-------ccCCchHHHhhHhHhhhccccchhhhcCHHHH--
Confidence            45677888886   5677774 5777888888888 333       33332 34677777788887777777776544  


Q ss_pred             ccccccccceEEEEEeCccccccccCCcccccccccCCceEEeeCCC----CChHHHHhhccCccEEEeccCCCCCccCc
Q 039808           80 VAWNAQCLTEFRIVVGHDIKNIVSRVPDAVAFDYNKQGKCLRFINGE----NIPDAVLQILACCTAFYLDNHLHINSLSD  155 (358)
Q Consensus        80 ~~~~~~~L~~l~i~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~----~~~~~~~~~l~~L~~L~l~~~~~~~~l~~  155 (358)
                         .+..|+.+.+..+..+-      -....+..+..|+.|.+.+.+    ++|.. .+.+.+|..++++.+ ++..+++
T Consensus       171 ---RL~~LqtL~Ls~NPL~h------fQLrQLPsmtsL~vLhms~TqRTl~N~Pts-ld~l~NL~dvDlS~N-~Lp~vPe  239 (1255)
T KOG0444|consen  171 ---RLSMLQTLKLSNNPLNH------FQLRQLPSMTSLSVLHMSNTQRTLDNIPTS-LDDLHNLRDVDLSEN-NLPIVPE  239 (1255)
T ss_pred             ---HHhhhhhhhcCCChhhH------HHHhcCccchhhhhhhcccccchhhcCCCc-hhhhhhhhhcccccc-CCCcchH
Confidence               35555655542111110      011234445566777776654    33332 455788888888877 7777777


Q ss_pred             ccccCccCCcEEEeecCCCceEecCCCCccccCCCccceeecccccccccccccccCCCcCccccEEeEecCCCccccCc
Q 039808          156 FGVRSINGLKFCIISECPKIETVVDGKELTTVIFPSLENLSIHHLWNLTHICEGSVPNGSFARLRILSVHACPKLKFVFS  235 (358)
Q Consensus       156 ~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~  235 (358)
                       ++.++++|+.|+++++. ++++.-.    .....+|++|.+++. .++.+   |.....++.|+.|++.+. +++.-+.
T Consensus       240 -cly~l~~LrrLNLS~N~-iteL~~~----~~~W~~lEtLNlSrN-QLt~L---P~avcKL~kL~kLy~n~N-kL~FeGi  308 (1255)
T KOG0444|consen  240 -CLYKLRNLRRLNLSGNK-ITELNMT----EGEWENLETLNLSRN-QLTVL---PDAVCKLTKLTKLYANNN-KLTFEGI  308 (1255)
T ss_pred             -HHhhhhhhheeccCcCc-eeeeecc----HHHHhhhhhhccccc-hhccc---hHHHhhhHHHHHHHhccC-cccccCC
Confidence             68899999999999874 4444222    456788999988874 44444   333456889999998874 5665555


Q ss_pred             hhhhccCCCccEEEEecCCccccccccccccccccccCCCcceeccccccccccccCC--CCCCccEEeeeCCcCCCccC
Q 039808          236 SFMIHFMSNLEDLTVEDCPAIEEIISEGEIIDSGCTALPRLKKLTLHYLPGLVTIWSS--AWPSLEYVSFYDCPRLKNIG  313 (358)
Q Consensus       236 ~~~l~~l~~L~~L~i~~c~~l~~i~~~~~~~~~~~~~l~~L~~L~l~~c~~L~~~~~~--~~~~L~~L~i~~C~~L~~lP  313 (358)
                      +..++.+.+|+.+...+ ..++.+|       .++..+++|++|.+ +|+.|-.+|..  -++-|+.|+++..|+|.-=|
T Consensus       309 PSGIGKL~~Levf~aan-N~LElVP-------EglcRC~kL~kL~L-~~NrLiTLPeaIHlL~~l~vLDlreNpnLVMPP  379 (1255)
T KOG0444|consen  309 PSGIGKLIQLEVFHAAN-NKLELVP-------EGLCRCVKLQKLKL-DHNRLITLPEAIHLLPDLKVLDLRENPNLVMPP  379 (1255)
T ss_pred             ccchhhhhhhHHHHhhc-cccccCc-------hhhhhhHHHHHhcc-cccceeechhhhhhcCCcceeeccCCcCccCCC
Confidence            56678899999998876 4777777       56778889999999 56677778887  68999999999988876433

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]

Probab=99.28  E-value=6.6e-14  Score=131.81  Aligned_cols=202  Identities=19%  Similarity=0.210  Sum_probs=112.9

Q ss_pred             ccccccCCceEEeeCCC--CChHHHHhhccCccEEEeccCCCCCccCcccccCccCCcEEEeecCCCceEecCCCCcccc
Q 039808          110 AFDYNKQGKCLRFINGE--NIPDAVLQILACCTAFYLDNHLHINSLSDFGVRSINGLKFCIISECPKIETVVDGKELTTV  187 (358)
Q Consensus       110 ~l~~~~~L~~L~l~~~~--~~~~~~~~~l~~L~~L~l~~~~~~~~l~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~  187 (358)
                      .+.+.+++-.|+++++.  .+|......++.|-.|+++++ .+..+++ -+..+.+|++|.+++++-.-.       .+.
T Consensus       121 ~LE~AKn~iVLNLS~N~IetIPn~lfinLtDLLfLDLS~N-rLe~LPP-Q~RRL~~LqtL~Ls~NPL~hf-------QLr  191 (1255)
T KOG0444|consen  121 NLEYAKNSIVLNLSYNNIETIPNSLFINLTDLLFLDLSNN-RLEMLPP-QIRRLSMLQTLKLSNNPLNHF-------QLR  191 (1255)
T ss_pred             hhhhhcCcEEEEcccCccccCCchHHHhhHhHhhhccccc-hhhhcCH-HHHHHhhhhhhhcCCChhhHH-------HHh
Confidence            44445556666665553  566666666666777777776 6666665 366677777777777653211       022


Q ss_pred             CCCccceeeccccccccc-ccccccCCCcCccccEEeEecCCCccccCchhhhccCCCccEEEEecCCcccccccccc--
Q 039808          188 IFPSLENLSIHHLWNLTH-ICEGSVPNGSFARLRILSVHACPKLKFVFSSFMIHFMSNLEDLTVEDCPAIEEIISEGE--  264 (358)
Q Consensus       188 ~l~~L~~L~l~~~~~l~~-~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~l~~l~~L~~L~i~~c~~l~~i~~~~~--  264 (358)
                      .+|+++.|..-++.+.+. +...|.+...+.+|+.++++. ..++.+  +..+-.+++|++|++++. ++.++....+  
T Consensus       192 QLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~-N~Lp~v--Pecly~l~~LrrLNLS~N-~iteL~~~~~~W  267 (1255)
T KOG0444|consen  192 QLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSE-NNLPIV--PECLYKLRNLRRLNLSGN-KITELNMTEGEW  267 (1255)
T ss_pred             cCccchhhhhhhcccccchhhcCCCchhhhhhhhhccccc-cCCCcc--hHHHhhhhhhheeccCcC-ceeeeeccHHHH
Confidence            344444443333333221 122244455677888888764 455554  234557888888888874 4444332110  


Q ss_pred             --------------ccccccccCCCcceecccccc-ccccccCC--CCCCccEEeeeCCcCCCccCCCCCCCCCeeEE
Q 039808          265 --------------IIDSGCTALPRLKKLTLHYLP-GLVTIWSS--AWPSLEYVSFYDCPRLKNIGLGSNLKHSVMEI  325 (358)
Q Consensus       265 --------------~~~~~~~~l~~L~~L~l~~c~-~L~~~~~~--~~~~L~~L~i~~C~~L~~lP~~~~~~~~L~~~  325 (358)
                                    ........+++|++|++.+.. .++.+|++  .+..|+.++..+. +|.-+|++++.+.+|+.+
T Consensus       268 ~~lEtLNlSrNQLt~LP~avcKL~kL~kLy~n~NkL~FeGiPSGIGKL~~Levf~aanN-~LElVPEglcRC~kL~kL  344 (1255)
T KOG0444|consen  268 ENLETLNLSRNQLTVLPDAVCKLTKLTKLYANNNKLTFEGIPSGIGKLIQLEVFHAANN-KLELVPEGLCRCVKLQKL  344 (1255)
T ss_pred             hhhhhhccccchhccchHHHhhhHHHHHHHhccCcccccCCccchhhhhhhHHHHhhcc-ccccCchhhhhhHHHHHh
Confidence                          011234445666666664321 24445555  5667777776653 577777777766555543

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]

Probab=99.19  E-value=2.7e-12  Score=120.17  Aligned_cols=61  Identities=18%  Similarity=0.240  Sum_probs=43.0

Q ss_pred             ccceeccCCC---CccCCchhhcCccccEEEeeecCCCcceecccchhhhhhcCCCCCceEEEEccCchhH
Q 039808            5 CNVEYVKMPP---QLISSGIISRLHALKTLSIVVYPGDKRWYKDVKSVVLEVCNLTELSSLCFHFPEIKLL   72 (358)
Q Consensus         5 ~~L~~l~L~~---~~ip~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~~~~~~l~~l   72 (358)
                      .|+++|+|+.   +.+..+-+.+|.+|-+|.+++ +.+.      +-....+++|++|+.|+++.+.++..
T Consensus       173 ~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsr-Nrit------tLp~r~Fk~L~~L~~LdLnrN~iriv  236 (873)
T KOG4194|consen  173 VNIKKLNLASNRITTLETGHFDSLNSLLTLKLSR-NRIT------TLPQRSFKRLPKLESLDLNRNRIRIV  236 (873)
T ss_pred             CCceEEeeccccccccccccccccchheeeeccc-Cccc------ccCHHHhhhcchhhhhhccccceeee
Confidence            4678888887   445667788888898998887 3221      11245678888888888877776654

>KOG0472 consensus Leucine-rich repeat protein [Function unknown]

Probab=98.92  E-value=7.5e-11  Score=106.13  Aligned_cols=59  Identities=22%  Similarity=0.347  Sum_probs=39.0

Q ss_pred             cccccCCceEEeeCCC--CChHHHHhhccCccEEEeccCCCCCccCcccccCccCCcEEEeecCC
Q 039808          111 FDYNKQGKCLRFINGE--NIPDAVLQILACCTAFYLDNHLHINSLSDFGVRSINGLKFCIISECP  173 (358)
Q Consensus       111 l~~~~~L~~L~l~~~~--~~~~~~~~~l~~L~~L~l~~~~~~~~l~~~~l~~l~~L~~L~l~~~~  173 (358)
                      .+++.++..|++-++.  .+|+++ ..+.+|..|+++++ .++.++. +++++ +|+.|.+.+++
T Consensus       248 ~~~L~~l~vLDLRdNklke~Pde~-clLrsL~rLDlSNN-~is~Lp~-sLgnl-hL~~L~leGNP  308 (565)
T KOG0472|consen  248 LKHLNSLLVLDLRDNKLKEVPDEI-CLLRSLERLDLSNN-DISSLPY-SLGNL-HLKFLALEGNP  308 (565)
T ss_pred             hcccccceeeeccccccccCchHH-HHhhhhhhhcccCC-ccccCCc-ccccc-eeeehhhcCCc
Confidence            3445556666665553  556543 34677788888877 7777776 57777 88888777654

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=98.78  E-value=4e-08  Score=98.76  Aligned_cols=74  Identities=20%  Similarity=0.145  Sum_probs=42.3

Q ss_pred             ccccEEeEecCCCccccCchhhhccCCCccEEEEecCCccccccccccccccccccCCCcceeccccccccccccCC--C
Q 039808          217 ARLRILSVHACPKLKFVFSSFMIHFMSNLEDLTVEDCPAIEEIISEGEIIDSGCTALPRLKKLTLHYLPGLVTIWSS--A  294 (358)
Q Consensus       217 ~~L~~L~l~~c~~l~~l~~~~~l~~l~~L~~L~i~~c~~l~~i~~~~~~~~~~~~~l~~L~~L~l~~c~~L~~~~~~--~  294 (358)
                      .+|+.|+++++ .++.++.     ..++|+.|+++++ .+..+|          ..+.+|+.|+++++ .++.+|..  .
T Consensus       382 ~~L~~LdLs~N-~Lt~LP~-----l~s~L~~LdLS~N-~LssIP----------~l~~~L~~L~Ls~N-qLt~LP~sl~~  443 (788)
T PRK15387        382 SGLKELIVSGN-RLTSLPV-----LPSELKELMVSGN-RLTSLP----------MLPSGLLSLSVYRN-QLTRLPESLIH  443 (788)
T ss_pred             cccceEEecCC-cccCCCC-----cccCCCEEEccCC-cCCCCC----------cchhhhhhhhhccC-cccccChHHhh
Confidence            35666666654 3443311     1245666666665 344443          12335677777554 56667665  6


Q ss_pred             CCCccEEeeeCCcC
Q 039808          295 WPSLEYVSFYDCPR  308 (358)
Q Consensus       295 ~~~L~~L~i~~C~~  308 (358)
                      +++|+.+++++++-
T Consensus       444 L~~L~~LdLs~N~L  457 (788)
T PRK15387        444 LSSETTVNLEGNPL  457 (788)
T ss_pred             ccCCCeEECCCCCC
Confidence            77777777777753

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=98.77  E-value=6.1e-08  Score=97.43  Aligned_cols=244  Identities=15%  Similarity=0.102  Sum_probs=142.8

Q ss_pred             eeccCCC---CccCCchhhcCccccEEEeeecCCCcceecccchhhhhhcCCCCCceEEEEccCchhHHHHHhhhccccc
Q 039808            8 EYVKMPP---QLISSGIISRLHALKTLSIVVYPGDKRWYKDVKSVVLEVCNLTELSSLCFHFPEIKLLELFLQRCVAWNA   84 (358)
Q Consensus         8 ~~l~L~~---~~ip~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~~~~~~l~~l~~~~~~~~~~~~   84 (358)
                      ..|+++.   +.+|..+.   .+|+.|++.+ ++++.++       .   .+++|++|++..+.++.+|.        ..
T Consensus       204 ~~LdLs~~~LtsLP~~l~---~~L~~L~L~~-N~Lt~LP-------~---lp~~Lk~LdLs~N~LtsLP~--------lp  261 (788)
T PRK15387        204 AVLNVGESGLTTLPDCLP---AHITTLVIPD-NNLTSLP-------A---LPPELRTLEVSGNQLTSLPV--------LP  261 (788)
T ss_pred             cEEEcCCCCCCcCCcchh---cCCCEEEccC-CcCCCCC-------C---CCCCCcEEEecCCccCcccC--------cc
Confidence            4556655   45787652   4789999887 5554322       1   25788899988888877763        23


Q ss_pred             cccceEEEEEeCccccccccCCcccccccccCCceEEeeCCC--CChHHHHhhccCccEEEeccCCCCCccCcccccCcc
Q 039808           85 QCLTEFRIVVGHDIKNIVSRVPDAVAFDYNKQGKCLRFINGE--NIPDAVLQILACCTAFYLDNHLHINSLSDFGVRSIN  162 (358)
Q Consensus        85 ~~L~~l~i~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~--~~~~~~~~~l~~L~~L~l~~~~~~~~l~~~~l~~l~  162 (358)
                      .+|+.|.+..+.     +..+|.     .+..|..|.+.++.  .++.    .+++|+.|++.++ .+..++..    ..
T Consensus       262 ~sL~~L~Ls~N~-----L~~Lp~-----lp~~L~~L~Ls~N~Lt~LP~----~p~~L~~LdLS~N-~L~~Lp~l----p~  322 (788)
T PRK15387        262 PGLLELSIFSNP-----LTHLPA-----LPSGLCKLWIFGNQLTSLPV----LPPGLQELSVSDN-QLASLPAL----PS  322 (788)
T ss_pred             cccceeeccCCc-----hhhhhh-----chhhcCEEECcCCccccccc----cccccceeECCCC-ccccCCCC----cc
Confidence            456666552111     122221     12356667766653  2222    3567888888877 66665531    23


Q ss_pred             CCcEEEeecCCCceEecCCCCccccCCCccceeecccccccccccccccCCCcCccccEEeEecCCCccccCchhhhccC
Q 039808          163 GLKFCIISECPKIETVVDGKELTTVIFPSLENLSIHHLWNLTHICEGSVPNGSFARLRILSVHACPKLKFVFSSFMIHFM  242 (358)
Q Consensus       163 ~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~l~~l  242 (358)
                      +|+.|++++| .+..++.       ...+|+.|++++. .++.++.      ..++|+.|++.++ .+..++.     ..
T Consensus       323 ~L~~L~Ls~N-~L~~LP~-------lp~~Lq~LdLS~N-~Ls~LP~------lp~~L~~L~Ls~N-~L~~LP~-----l~  381 (788)
T PRK15387        323 ELCKLWAYNN-QLTSLPT-------LPSGLQELSVSDN-QLASLPT------LPSELYKLWAYNN-RLTSLPA-----LP  381 (788)
T ss_pred             cccccccccC-ccccccc-------cccccceEecCCC-ccCCCCC------CCcccceehhhcc-ccccCcc-----cc
Confidence            5777777765 3333321       1246788888764 4444421      1356777777664 3554321     23


Q ss_pred             CCccEEEEecCCccccccccccccccccccCCCcceeccccccccccccCCCCCCccEEeeeCCcCCCccCCCCCCCCCe
Q 039808          243 SNLEDLTVEDCPAIEEIISEGEIIDSGCTALPRLKKLTLHYLPGLVTIWSSAWPSLEYVSFYDCPRLKNIGLGSNLKHSV  322 (358)
Q Consensus       243 ~~L~~L~i~~c~~l~~i~~~~~~~~~~~~~l~~L~~L~l~~c~~L~~~~~~~~~~L~~L~i~~C~~L~~lP~~~~~~~~L  322 (358)
                      .+|+.|+++++ .+..++          ...++|+.|+++++ .++.+|. .+.+|+.|+++++ +++.+|..+..+++|
T Consensus       382 ~~L~~LdLs~N-~Lt~LP----------~l~s~L~~LdLS~N-~LssIP~-l~~~L~~L~Ls~N-qLt~LP~sl~~L~~L  447 (788)
T PRK15387        382 SGLKELIVSGN-RLTSLP----------VLPSELKELMVSGN-RLTSLPM-LPSGLLSLSVYRN-QLTRLPESLIHLSSE  447 (788)
T ss_pred             cccceEEecCC-cccCCC----------CcccCCCEEEccCC-cCCCCCc-chhhhhhhhhccC-cccccChHHhhccCC
Confidence            56788888775 454444          12357888888765 5666654 3446777888775 477888777666666


Q ss_pred             eEEEe
Q 039808          323 MEIKA  327 (358)
Q Consensus       323 ~~~~~  327 (358)
                      ..+.-
T Consensus       448 ~~LdL  452 (788)
T PRK15387        448 TTVNL  452 (788)
T ss_pred             CeEEC
Confidence            66644

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=98.76  E-value=1.9e-08  Score=101.27  Aligned_cols=17  Identities=6%  Similarity=0.153  Sum_probs=9.7

Q ss_pred             CCCceEEEEccCchhHH
Q 039808           57 TELSSLCFHFPEIKLLE   73 (358)
Q Consensus        57 ~~L~~L~~~~~~l~~l~   73 (358)
                      ++|++|.+..+.++.+|
T Consensus       220 ~nL~~L~Ls~N~LtsLP  236 (754)
T PRK15370        220 GNIKTLYANSNQLTSIP  236 (754)
T ss_pred             cCCCEEECCCCccccCC
Confidence            35666666555555554

>KOG0472 consensus Leucine-rich repeat protein [Function unknown]

Probab=98.75  E-value=5.7e-10  Score=100.57  Aligned_cols=177  Identities=16%  Similarity=0.177  Sum_probs=95.5

Q ss_pred             CCceEEeeCCC--CChHHHHhhccC--ccEEEeccCCCCCccCcccccCccCCcEEEeecCCCceEecCCCCccccCCCc
Q 039808          116 QGKCLRFINGE--NIPDAVLQILAC--CTAFYLDNHLHINSLSDFGVRSINGLKFCIISECPKIETVVDGKELTTVIFPS  191 (358)
Q Consensus       116 ~L~~L~l~~~~--~~~~~~~~~l~~--L~~L~l~~~~~~~~l~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~  191 (358)
                      +.+.|.+.+-+  .+|+.+++....  .+...+..+ .+..+|. .+..+..+.+.-+.++..+..++..    +..+++
T Consensus       363 ~tkiL~~s~~qlt~VPdEVfea~~~~~Vt~VnfskN-qL~elPk-~L~~lkelvT~l~lsnn~isfv~~~----l~~l~k  436 (565)
T KOG0472|consen  363 TTKILDVSDKQLTLVPDEVFEAAKSEIVTSVNFSKN-QLCELPK-RLVELKELVTDLVLSNNKISFVPLE----LSQLQK  436 (565)
T ss_pred             hhhhhcccccccccCCHHHHHHhhhcceEEEecccc-hHhhhhh-hhHHHHHHHHHHHhhcCccccchHH----HHhhhc
Confidence            45556555543  566665553331  334455554 4444443 2333444443333333333333222    556777


Q ss_pred             cceeecccccccccccccccCCCcCccccEEeEecCCCccccCchhhhccCCCccEEEEecCCccccccccccccccccc
Q 039808          192 LENLSIHHLWNLTHICEGSVPNGSFARLRILSVHACPKLKFVFSSFMIHFMSNLEDLTVEDCPAIEEIISEGEIIDSGCT  271 (358)
Q Consensus       192 L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~l~~l~~L~~L~i~~c~~l~~i~~~~~~~~~~~~  271 (358)
                      |.-|++++- -+..+   |...+.+..|+.|+++.. +...+  +.++ +.+...+..+.....++++..      ....
T Consensus       437 Lt~L~L~NN-~Ln~L---P~e~~~lv~Lq~LnlS~N-rFr~l--P~~~-y~lq~lEtllas~nqi~~vd~------~~l~  502 (565)
T KOG0472|consen  437 LTFLDLSNN-LLNDL---PEEMGSLVRLQTLNLSFN-RFRML--PECL-YELQTLETLLASNNQIGSVDP------SGLK  502 (565)
T ss_pred             ceeeecccc-hhhhc---chhhhhhhhhheeccccc-ccccc--hHHH-hhHHHHHHHHhccccccccCh------HHhh
Confidence            777777663 23333   223445666777777654 23322  1122 222222222333345555541      2467


Q ss_pred             cCCCcceeccccccccccccCC--CCCCccEEeeeCCcCCCccCCC
Q 039808          272 ALPRLKKLTLHYLPGLVTIWSS--AWPSLEYVSFYDCPRLKNIGLG  315 (358)
Q Consensus       272 ~l~~L~~L~l~~c~~L~~~~~~--~~~~L~~L~i~~C~~L~~lP~~  315 (358)
                      ++.+|.+|++.+ +.++.+|..  +|++|++|.++|.|.=  .|..
T Consensus       503 nm~nL~tLDL~n-Ndlq~IPp~LgnmtnL~hLeL~gNpfr--~Pr~  545 (565)
T KOG0472|consen  503 NMRNLTTLDLQN-NDLQQIPPILGNMTNLRHLELDGNPFR--QPRH  545 (565)
T ss_pred             hhhhcceeccCC-CchhhCChhhccccceeEEEecCCccC--CCHH
Confidence            888999999954 478889988  8999999999998732  5543

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]

Probab=98.71  E-value=1.6e-09  Score=106.83  Aligned_cols=38  Identities=29%  Similarity=0.408  Sum_probs=23.5

Q ss_pred             cccCCCcceeccccccccccccCC---CCCCccEEeeeCCcC
Q 039808          270 CTALPRLKKLTLHYLPGLVTIWSS---AWPSLEYVSFYDCPR  308 (358)
Q Consensus       270 ~~~l~~L~~L~l~~c~~L~~~~~~---~~~~L~~L~i~~C~~  308 (358)
                      +..+++|+.+++ +|++|+.+-..   ..+.|++|+++|.+.
T Consensus       448 ~~~l~qL~~lDl-S~N~L~~~~l~~~~p~p~LkyLdlSGN~~  488 (1081)
T KOG0618|consen  448 LAQLPQLKVLDL-SCNNLSEVTLPEALPSPNLKYLDLSGNTR  488 (1081)
T ss_pred             hhhcCcceEEec-ccchhhhhhhhhhCCCcccceeeccCCcc
Confidence            445666777777 45566665444   346777777777653

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]

Probab=98.66  E-value=3.3e-09  Score=104.71  Aligned_cols=174  Identities=15%  Similarity=0.221  Sum_probs=114.1

Q ss_pred             ccCccEEEeccCCCCCccCcccccCccCCcEEEeecCCCceEecCCCC----------------------ccccCCCccc
Q 039808          136 LACCTAFYLDNHLHINSLSDFGVRSINGLKFCIISECPKIETVVDGKE----------------------LTTVIFPSLE  193 (358)
Q Consensus       136 l~~L~~L~l~~~~~~~~l~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~----------------------~~~~~l~~L~  193 (358)
                      .++|+.|.+..+ .+.+++++ .++++.|++|++..+ ++...++...                      +....++.|+
T Consensus       286 ~~~L~~l~~~~n-el~yip~~-le~~~sL~tLdL~~N-~L~~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq  362 (1081)
T KOG0618|consen  286 ITSLVSLSAAYN-ELEYIPPF-LEGLKSLRTLDLQSN-NLPSLPDNFLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQ  362 (1081)
T ss_pred             hhhHHHHHhhhh-hhhhCCCc-ccccceeeeeeehhc-cccccchHHHhhhhHHHHHHhhhhccccccccccchhhHHHH
Confidence            456666666666 77777763 677889999999876 4444433210                      0112234555


Q ss_pred             eeecccccccccccccccCCCcCccccEEeEecCCCccccCchhhhccCCCccEEEEecCCccccccccccccccccccC
Q 039808          194 NLSIHHLWNLTHICEGSVPNGSFARLRILSVHACPKLKFVFSSFMIHFMSNLEDLTVEDCPAIEEIISEGEIIDSGCTAL  273 (358)
Q Consensus       194 ~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~l~~l~~L~~L~i~~c~~l~~i~~~~~~~~~~~~~l  273 (358)
                      .|++.+-. ++.-+  .+....|.+||.|++++. ++..+ |...+.+++.|++|++++. +++.++       .+...+
T Consensus       363 ~LylanN~-Ltd~c--~p~l~~~~hLKVLhLsyN-rL~~f-pas~~~kle~LeeL~LSGN-kL~~Lp-------~tva~~  429 (1081)
T KOG0618|consen  363 ELYLANNH-LTDSC--FPVLVNFKHLKVLHLSYN-RLNSF-PASKLRKLEELEELNLSGN-KLTTLP-------DTVANL  429 (1081)
T ss_pred             HHHHhcCc-ccccc--hhhhccccceeeeeeccc-ccccC-CHHHHhchHHhHHHhcccc-hhhhhh-------HHHHhh
Confidence            55554432 22211  122457889999999885 56654 4456788999999999984 777777       467788


Q ss_pred             CCcceeccccccccccccCC-CCCCccEEeeeCCcCCCccCCCCCCC-CCeeEEEe
Q 039808          274 PRLKKLTLHYLPGLVTIWSS-AWPSLEYVSFYDCPRLKNIGLGSNLK-HSVMEIKA  327 (358)
Q Consensus       274 ~~L~~L~l~~c~~L~~~~~~-~~~~L~~L~i~~C~~L~~lP~~~~~~-~~L~~~~~  327 (358)
                      +.|++|... -+.+..+|.. .++.|+.++++. ..|+.+-...... +.|+.++-
T Consensus       430 ~~L~tL~ah-sN~l~~fPe~~~l~qL~~lDlS~-N~L~~~~l~~~~p~p~LkyLdl  483 (1081)
T KOG0618|consen  430 GRLHTLRAH-SNQLLSFPELAQLPQLKVLDLSC-NNLSEVTLPEALPSPNLKYLDL  483 (1081)
T ss_pred             hhhHHHhhc-CCceeechhhhhcCcceEEeccc-chhhhhhhhhhCCCcccceeec
Confidence            999999884 4478888855 899999999954 5677654333333 66776643

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]

Probab=98.63  E-value=1.7e-08  Score=103.29  Aligned_cols=224  Identities=20%  Similarity=0.176  Sum_probs=112.5

Q ss_pred             cCCchhhcCccccEEEeeecCCCcceecccchhhhhhcCCCCCceEEEEccCchhHHHHHhhhccccccccceEEEEEeC
Q 039808           17 ISSGIISRLHALKTLSIVVYPGDKRWYKDVKSVVLEVCNLTELSSLCFHFPEIKLLELFLQRCVAWNAQCLTEFRIVVGH   96 (358)
Q Consensus        17 ip~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~~~~~~l~~l~~~~~~~~~~~~~~L~~l~i~~~~   96 (358)
                      ++.+.+..++.|++||++++.+       ....|.+|++|-+|+.|++..+.++.+|..++     ++++|.        
T Consensus       562 is~~ff~~m~~LrVLDLs~~~~-------l~~LP~~I~~Li~LryL~L~~t~I~~LP~~l~-----~Lk~L~--------  621 (889)
T KOG4658|consen  562 ISGEFFRSLPLLRVLDLSGNSS-------LSKLPSSIGELVHLRYLDLSDTGISHLPSGLG-----NLKKLI--------  621 (889)
T ss_pred             cCHHHHhhCcceEEEECCCCCc-------cCcCChHHhhhhhhhcccccCCCccccchHHH-----HHHhhh--------
Confidence            4444455666666666665222       23445566666666666666666666665444     233333        


Q ss_pred             ccccccccCCcccccccccCCceEEeeCCC--CChHHHHhhccCccEEEeccCC-CCCccCcccccCccCCcEEEeecCC
Q 039808           97 DIKNIVSRVPDAVAFDYNKQGKCLRFINGE--NIPDAVLQILACCTAFYLDNHL-HINSLSDFGVRSINGLKFCIISECP  173 (358)
Q Consensus        97 ~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~--~~~~~~~~~l~~L~~L~l~~~~-~~~~l~~~~l~~l~~L~~L~l~~~~  173 (358)
                                            +|++....  .....+...+.+|+.|.+.... .........+.++.+|+.+.+..+.
T Consensus       622 ----------------------~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~~~~~~~~l~el~~Le~L~~ls~~~~s  679 (889)
T KOG4658|consen  622 ----------------------YLNLEVTGRLESIPGILLELQSLRVLRLPRSALSNDKLLLKELENLEHLENLSITISS  679 (889)
T ss_pred             ----------------------eeccccccccccccchhhhcccccEEEeeccccccchhhHHhhhcccchhhheeecch
Confidence                                  33332221  1112333445666666665442 1111111124455555555554332


Q ss_pred             CceEecCCCCccccCCCccc----eeecccccccccccccccCCCcCccccEEeEecCCCccccC---chhhhc-cCCCc
Q 039808          174 KIETVVDGKELTTVIFPSLE----NLSIHHLWNLTHICEGSVPNGSFARLRILSVHACPKLKFVF---SSFMIH-FMSNL  245 (358)
Q Consensus       174 ~~~~~~~~~~~~~~~l~~L~----~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~---~~~~l~-~l~~L  245 (358)
                      .  .+...    ....++|.    .+.+.++..-.    .....+.+.+|+.|.|.+|.......   ...... .++++
T Consensus       680 ~--~~~e~----l~~~~~L~~~~~~l~~~~~~~~~----~~~~~~~l~~L~~L~i~~~~~~e~~~~~~~~~~~~~~f~~l  749 (889)
T KOG4658|consen  680 V--LLLED----LLGMTRLRSLLQSLSIEGCSKRT----LISSLGSLGNLEELSILDCGISEIVIEWEESLIVLLCFPNL  749 (889)
T ss_pred             h--HhHhh----hhhhHHHHHHhHhhhhcccccce----eecccccccCcceEEEEcCCCchhhcccccccchhhhHHHH
Confidence            2  11011    11222333    22222211111    12334567889999999887654321   001111 25567


Q ss_pred             cEEEEecCCccccccccccccccccccCCCcceeccccccccccccCC--CCCCccE
Q 039808          246 EDLTVEDCPAIEEIISEGEIIDSGCTALPRLKKLTLHYLPGLVTIWSS--AWPSLEY  300 (358)
Q Consensus       246 ~~L~i~~c~~l~~i~~~~~~~~~~~~~l~~L~~L~l~~c~~L~~~~~~--~~~~L~~  300 (358)
                      ..+.+.+|..++...        +....|+|+.|++..|+.++++.+.  .+..+..
T Consensus       750 ~~~~~~~~~~~r~l~--------~~~f~~~L~~l~l~~~~~~e~~i~~~k~~~~l~~  798 (889)
T KOG4658|consen  750 SKVSILNCHMLRDLT--------WLLFAPHLTSLSLVSCRLLEDIIPKLKALLELKE  798 (889)
T ss_pred             HHHHhhccccccccc--------hhhccCcccEEEEecccccccCCCHHHHhhhccc
Confidence            777777887776653        3456678999999888888877655  4444443

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=98.54  E-value=1.3e-07  Score=95.31  Aligned_cols=17  Identities=12%  Similarity=0.143  Sum_probs=11.6

Q ss_pred             CCceEEEEccCchhHHH
Q 039808           58 ELSSLCFHFPEIKLLEL   74 (358)
Q Consensus        58 ~L~~L~~~~~~l~~l~~   74 (358)
                      +|+.|.+..+.+..+|.
T Consensus       242 ~L~~L~Ls~N~L~~LP~  258 (754)
T PRK15370        242 TIQEMELSINRITELPE  258 (754)
T ss_pred             cccEEECcCCccCcCCh
Confidence            67777777666666654

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=98.49  E-value=9.6e-08  Score=87.57  Aligned_cols=46  Identities=17%  Similarity=0.257  Sum_probs=28.6

Q ss_pred             hhcCccccEEEeeecCCCcceecccchhhhhhcCCCCCceEEEEccCch
Q 039808           22 ISRLHALKTLSIVVYPGDKRWYKDVKSVVLEVCNLTELSSLCFHFPEIK   70 (358)
Q Consensus        22 i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~~~~~~l~   70 (358)
                      +..+.+|++|+++++ .+..  .....+...+...++|+.+.+....+.
T Consensus        19 ~~~l~~L~~l~l~~~-~l~~--~~~~~i~~~l~~~~~l~~l~l~~~~~~   64 (319)
T cd00116          19 LPKLLCLQVLRLEGN-TLGE--EAAKALASALRPQPSLKELCLSLNETG   64 (319)
T ss_pred             HHHHhhccEEeecCC-CCcH--HHHHHHHHHHhhCCCceEEeccccccC
Confidence            567778999999983 2211  001223455778888888888655443

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]

Probab=98.44  E-value=4.9e-09  Score=84.23  Aligned_cols=136  Identities=15%  Similarity=0.228  Sum_probs=78.7

Q ss_pred             CccCCchhhcCccccEEEeeecCCCcceecccchhhhhhcCCCCCceEEEEccCchhHHHHHhhhccccccccceEEEEE
Q 039808           15 QLISSGIISRLHALKTLSIVVYPGDKRWYKDVKSVVLEVCNLTELSSLCFHFPEIKLLELFLQRCVAWNAQCLTEFRIVV   94 (358)
Q Consensus        15 ~~ip~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~~~~~~l~~l~~~~~~~~~~~~~~L~~l~i~~   94 (358)
                      ..+|++| ..|.+|+.|++.+        ...+..+..++.+++|+.|++..+.+..+|..++..|.     |..+.+..
T Consensus        46 ~~vppni-a~l~nlevln~~n--------nqie~lp~~issl~klr~lnvgmnrl~~lprgfgs~p~-----levldlty  111 (264)
T KOG0617|consen   46 TVVPPNI-AELKNLEVLNLSN--------NQIEELPTSISSLPKLRILNVGMNRLNILPRGFGSFPA-----LEVLDLTY  111 (264)
T ss_pred             eecCCcH-HHhhhhhhhhccc--------chhhhcChhhhhchhhhheecchhhhhcCccccCCCch-----hhhhhccc
Confidence            3467775 5788888887776        22344456677888888888877777777766664333     33333211


Q ss_pred             eCccccccccCCcccccccccCCceEEeeCCC--CChHHHHhhccCccEEEeccCCCCCccCcccccCccCCcEEEeecC
Q 039808           95 GHDIKNIVSRVPDAVAFDYNKQGKCLRFINGE--NIPDAVLQILACCTAFYLDNHLHINSLSDFGVRSINGLKFCIISEC  172 (358)
Q Consensus        95 ~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~--~~~~~~~~~l~~L~~L~l~~~~~~~~l~~~~l~~l~~L~~L~l~~~  172 (358)
                      +..+   -..+|+  .+-++..|+.|++.+++  -+|.. .+.+++|+.|.++++ ++-+++. .++.+..|++|+|.++
T Consensus       112 nnl~---e~~lpg--nff~m~tlralyl~dndfe~lp~d-vg~lt~lqil~lrdn-dll~lpk-eig~lt~lrelhiqgn  183 (264)
T KOG0617|consen  112 NNLN---ENSLPG--NFFYMTTLRALYLGDNDFEILPPD-VGKLTNLQILSLRDN-DLLSLPK-EIGDLTRLRELHIQGN  183 (264)
T ss_pred             cccc---cccCCc--chhHHHHHHHHHhcCCCcccCChh-hhhhcceeEEeeccC-chhhCcH-HHHHHHHHHHHhcccc
Confidence            1111   023333  55555566666666654  23333 234666666666666 5555554 3666667777776665

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]

Probab=98.41  E-value=4.5e-09  Score=84.41  Aligned_cols=160  Identities=18%  Similarity=0.210  Sum_probs=102.8

Q ss_pred             CccEEEeccCCCCCccCcccccCccCCcEEEeecCCCceEecCCCCccccCCCccceeecccccccccccccccCCCcCc
Q 039808          138 CCTAFYLDNHLHINSLSDFGVRSINGLKFCIISECPKIETVVDGKELTTVIFPSLENLSIHHLWNLTHICEGSVPNGSFA  217 (358)
Q Consensus       138 ~L~~L~l~~~~~~~~l~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~  217 (358)
                      +++.|.++.+ .+..+++ .+..+.+|+.|.+.++ .+++++..    +..++.|+.|.+. +..+..+   +..+|+||
T Consensus        34 ~ITrLtLSHN-Kl~~vpp-nia~l~nlevln~~nn-qie~lp~~----issl~klr~lnvg-mnrl~~l---prgfgs~p  102 (264)
T KOG0617|consen   34 NITRLTLSHN-KLTVVPP-NIAELKNLEVLNLSNN-QIEELPTS----ISSLPKLRILNVG-MNRLNIL---PRGFGSFP  102 (264)
T ss_pred             hhhhhhcccC-ceeecCC-cHHHhhhhhhhhcccc-hhhhcChh----hhhchhhhheecc-hhhhhcC---ccccCCCc
Confidence            4444555555 5555555 4677777777777665 55555444    5666777776663 3444443   34467788


Q ss_pred             cccEEeEecCCCccccCchhhhccCCCccEEEEecCCccccccccccccccccccCCCcceeccccccccccccCC--CC
Q 039808          218 RLRILSVHACPKLKFVFSSFMIHFMSNLEDLTVEDCPAIEEIISEGEIIDSGCTALPRLKKLTLHYLPGLVTIWSS--AW  295 (358)
Q Consensus       218 ~L~~L~l~~c~~l~~l~~~~~l~~l~~L~~L~i~~c~~l~~i~~~~~~~~~~~~~l~~L~~L~l~~c~~L~~~~~~--~~  295 (358)
                      .|+.|++.+..--+...|.+++ .++.|+.|++++. .-+.+|       ...+.+++|+.|.+.+. .+-++|.+  .+
T Consensus       103 ~levldltynnl~e~~lpgnff-~m~tlralyl~dn-dfe~lp-------~dvg~lt~lqil~lrdn-dll~lpkeig~l  172 (264)
T KOG0617|consen  103 ALEVLDLTYNNLNENSLPGNFF-YMTTLRALYLGDN-DFEILP-------PDVGKLTNLQILSLRDN-DLLSLPKEIGDL  172 (264)
T ss_pred             hhhhhhccccccccccCCcchh-HHHHHHHHHhcCC-CcccCC-------hhhhhhcceeEEeeccC-chhhCcHHHHHH
Confidence            8888888765444444454443 5677777888764 344444       45778888888888766 34456766  68


Q ss_pred             CCccEEeeeCCcCCCccCCCCCCC
Q 039808          296 PSLEYVSFYDCPRLKNIGLGSNLK  319 (358)
Q Consensus       296 ~~L~~L~i~~C~~L~~lP~~~~~~  319 (358)
                      +.|++|+|.|. .|+-+|..++.+
T Consensus       173 t~lrelhiqgn-rl~vlppel~~l  195 (264)
T KOG0617|consen  173 TRLRELHIQGN-RLTVLPPELANL  195 (264)
T ss_pred             HHHHHHhcccc-eeeecChhhhhh
Confidence            88888888885 588888776553

>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]

Probab=98.35  E-value=3.5e-08  Score=89.06  Aligned_cols=116  Identities=20%  Similarity=0.171  Sum_probs=72.0

Q ss_pred             CccCCchhhcCccccEEEeeecCCCcceecccchh-hhhhcCCCCCceEEEEc-cCchhHHHHHhhhccccccccceEEE
Q 039808           15 QLISSGIISRLHALKTLSIVVYPGDKRWYKDVKSV-VLEVCNLTELSSLCFHF-PEIKLLELFLQRCVAWNAQCLTEFRI   92 (358)
Q Consensus        15 ~~ip~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~-~~~l~~l~~L~~L~~~~-~~l~~l~~~~~~~~~~~~~~L~~l~i   92 (358)
                      +.||+++|+.+.+||.|+|+. +.+       ..+ +..+.+++.|..|-+-. +.++.++.  +               
T Consensus        80 ~~iP~~aF~~l~~LRrLdLS~-N~I-------s~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k--~---------------  134 (498)
T KOG4237|consen   80 SSIPPGAFKTLHRLRRLDLSK-NNI-------SFIAPDAFKGLASLLSLVLYGNNKITDLPK--G---------------  134 (498)
T ss_pred             ccCChhhccchhhhceecccc-cch-------hhcChHhhhhhHhhhHHHhhcCCchhhhhh--h---------------
Confidence            568888888888888888887 222       222 45677777777666544 56777764  1               


Q ss_pred             EEeCccccccccCCcccccccccCCceEEeeCC--CCChHHHHhhccCccEEEeccCCCCCccCcccccCccCCcEEEee
Q 039808           93 VVGHDIKNIVSRVPDAVAFDYNKQGKCLRFING--ENIPDAVLQILACCTAFYLDNHLHINSLSDFGVRSINGLKFCIIS  170 (358)
Q Consensus        93 ~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~--~~~~~~~~~~l~~L~~L~l~~~~~~~~l~~~~l~~l~~L~~L~l~  170 (358)
                                       .+..+..++.|.+-.+  ..+....+..++++..|.+.++ .+..++..++..+..++.+.+.
T Consensus       135 -----------------~F~gL~slqrLllNan~i~Cir~~al~dL~~l~lLslyDn-~~q~i~~~tf~~l~~i~tlhlA  196 (498)
T KOG4237|consen  135 -----------------AFGGLSSLQRLLLNANHINCIRQDALRDLPSLSLLSLYDN-KIQSICKGTFQGLAAIKTLHLA  196 (498)
T ss_pred             -----------------HhhhHHHHHHHhcChhhhcchhHHHHHHhhhcchhcccch-hhhhhccccccchhccchHhhh
Confidence                             1222223333333222  2445555666777777777776 6666666667777788887776


Q ss_pred             cCC
Q 039808          171 ECP  173 (358)
Q Consensus       171 ~~~  173 (358)
                      .++
T Consensus       197 ~np  199 (498)
T KOG4237|consen  197 QNP  199 (498)
T ss_pred             cCc
Confidence            655

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=98.16  E-value=7.5e-07  Score=81.64  Aligned_cols=194  Identities=13%  Similarity=0.030  Sum_probs=80.7

Q ss_pred             hhhcCCCCCceEEEEccCchh-----HHHHHhhhccccccccceEEEEEeCcc--ccccccCCcccccccccCCceEEee
Q 039808           51 LEVCNLTELSSLCFHFPEIKL-----LELFLQRCVAWNAQCLTEFRIVVGHDI--KNIVSRVPDAVAFDYNKQGKCLRFI  123 (358)
Q Consensus        51 ~~l~~l~~L~~L~~~~~~l~~-----l~~~~~~~~~~~~~~L~~l~i~~~~~~--~~~~~~~~~~~~l~~~~~L~~L~l~  123 (358)
                      ..+..+++|+++.+....+..     ++..+.     ..++++++.+......  ...+...+  ..+....+++.|.+.
T Consensus        17 ~~~~~l~~L~~l~l~~~~l~~~~~~~i~~~l~-----~~~~l~~l~l~~~~~~~~~~~~~~~~--~~l~~~~~L~~L~l~   89 (319)
T cd00116          17 ELLPKLLCLQVLRLEGNTLGEEAAKALASALR-----PQPSLKELCLSLNETGRIPRGLQSLL--QGLTKGCGLQELDLS   89 (319)
T ss_pred             HHHHHHhhccEEeecCCCCcHHHHHHHHHHHh-----hCCCceEEeccccccCCcchHHHHHH--HHHHhcCceeEEEcc
Confidence            345666679999997766532     322222     3344555544211000  00000000  123334466666665


Q ss_pred             CCCC--ChHHHHhhcc---CccEEEeccCCCCCc--cCc--ccccCc-cCCcEEEeecCCCceEecCCCCccccCCCccc
Q 039808          124 NGEN--IPDAVLQILA---CCTAFYLDNHLHINS--LSD--FGVRSI-NGLKFCIISECPKIETVVDGKELTTVIFPSLE  193 (358)
Q Consensus       124 ~~~~--~~~~~~~~l~---~L~~L~l~~~~~~~~--l~~--~~l~~l-~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~  193 (358)
                      ++.-  ........+.   +++.|++.++ .+..  ...  ..+..+ ++|++|++++|.................++|+
T Consensus        90 ~~~~~~~~~~~~~~l~~~~~L~~L~ls~~-~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~  168 (319)
T cd00116          90 DNALGPDGCGVLESLLRSSSLQELKLNNN-GLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKALRANRDLK  168 (319)
T ss_pred             CCCCChhHHHHHHHHhccCcccEEEeeCC-ccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHHHHhCCCcC
Confidence            5432  1111222222   2666666665 3321  000  023444 66677777666432111000000122334566


Q ss_pred             eeeccccccccc-ccccccCCCcCccccEEeEecCCCccccCc---hhhhccCCCccEEEEecC
Q 039808          194 NLSIHHLWNLTH-ICEGSVPNGSFARLRILSVHACPKLKFVFS---SFMIHFMSNLEDLTVEDC  253 (358)
Q Consensus       194 ~L~l~~~~~l~~-~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~---~~~l~~l~~L~~L~i~~c  253 (358)
                      +|++.++.-... +.........+++|+.|++++|. +.....   ...+..+++|+.|++++|
T Consensus       169 ~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~-i~~~~~~~l~~~~~~~~~L~~L~ls~n  231 (319)
T cd00116         169 ELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNG-LTDEGASALAETLASLKSLEVLNLGDN  231 (319)
T ss_pred             EEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCc-cChHHHHHHHHHhcccCCCCEEecCCC
Confidence            666665432110 00000011223466666666653 221111   112344566666666665

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]

Probab=97.99  E-value=2.3e-06  Score=78.51  Aligned_cols=86  Identities=14%  Similarity=0.162  Sum_probs=38.6

Q ss_pred             hccCccEEEeccCCCCCccCcc-cccCccCCcEEEeecCCCceEecCCCCccccCCCccceeecccccccccccccccCC
Q 039808          135 ILACCTAFYLDNHLHINSLSDF-GVRSINGLKFCIISECPKIETVVDGKELTTVIFPSLENLSIHHLWNLTHICEGSVPN  213 (358)
Q Consensus       135 ~l~~L~~L~l~~~~~~~~l~~~-~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~  213 (358)
                      .+.+++.|.+..| +++.-.-. .+..+|+|+.|.+..|..+. +...   +...+..|++|++++-..+.. ... ...
T Consensus       195 ~l~~lK~L~l~~C-Gls~k~V~~~~~~fPsl~~L~L~~N~~~~-~~~~---~~~i~~~L~~LdLs~N~li~~-~~~-~~~  267 (505)
T KOG3207|consen  195 LLSHLKQLVLNSC-GLSWKDVQWILLTFPSLEVLYLEANEIIL-IKAT---STKILQTLQELDLSNNNLIDF-DQG-YKV  267 (505)
T ss_pred             hhhhhheEEeccC-CCCHHHHHHHHHhCCcHHHhhhhcccccc-eecc---hhhhhhHHhhccccCCccccc-ccc-ccc
Confidence            4556666666666 44421110 34456666666666653211 1011   123445566666655332221 110 112


Q ss_pred             CcCccccEEeEecC
Q 039808          214 GSFARLRILSVHAC  227 (358)
Q Consensus       214 ~~~~~L~~L~l~~c  227 (358)
                      +.||.|+.|.+..|
T Consensus       268 ~~l~~L~~Lnls~t  281 (505)
T KOG3207|consen  268 GTLPGLNQLNLSST  281 (505)
T ss_pred             ccccchhhhhcccc
Confidence            44555555555443

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]

Probab=97.93  E-value=1.4e-06  Score=76.14  Aligned_cols=117  Identities=15%  Similarity=0.015  Sum_probs=58.7

Q ss_pred             cCccEEEeccCCCCCccCcc-cccCccCCcEEEeecCCCceEecCCCCccccCCCccceeecccccccccccccccCCCc
Q 039808          137 ACCTAFYLDNHLHINSLSDF-GVRSINGLKFCIISECPKIETVVDGKELTTVIFPSLENLSIHHLWNLTHICEGSVPNGS  215 (358)
Q Consensus       137 ~~L~~L~l~~~~~~~~l~~~-~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~  215 (358)
                      .+|+.+.+..|.+++..... -+.++..|.+|+|+||....+....  ...+.-++|+.|.+++|...-.......-...
T Consensus       234 ~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~LNlsWc~l~~~~Vtv--~V~hise~l~~LNlsG~rrnl~~sh~~tL~~r  311 (419)
T KOG2120|consen  234 SNLVRLNLSMCSGFTENALQLLLSSCSRLDELNLSWCFLFTEKVTV--AVAHISETLTQLNLSGYRRNLQKSHLSTLVRR  311 (419)
T ss_pred             ccceeeccccccccchhHHHHHHHhhhhHhhcCchHhhccchhhhH--HHhhhchhhhhhhhhhhHhhhhhhHHHHHHHh
Confidence            45667777777666543221 4678889999999999665543111  01233467777777776543221100000112


Q ss_pred             CccccEEeEecCCCccccCchhhhccCCCccEEEEecCCcc
Q 039808          216 FARLRILSVHACPKLKFVFSSFMIHFMSNLEDLTVEDCPAI  256 (358)
Q Consensus       216 ~~~L~~L~l~~c~~l~~l~~~~~l~~l~~L~~L~i~~c~~l  256 (358)
                      .|+|.+|++++|-.++.-.. ..+..++-|++|.++.|+.+
T Consensus       312 cp~l~~LDLSD~v~l~~~~~-~~~~kf~~L~~lSlsRCY~i  351 (419)
T KOG2120|consen  312 CPNLVHLDLSDSVMLKNDCF-QEFFKFNYLQHLSLSRCYDI  351 (419)
T ss_pred             CCceeeeccccccccCchHH-HHHHhcchheeeehhhhcCC
Confidence            34555555555544443100 11234444555555555443

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]

Probab=97.91  E-value=4.7e-07  Score=79.10  Aligned_cols=181  Identities=14%  Similarity=0.127  Sum_probs=118.0

Q ss_pred             CCceEEeeCCCCCh---HHHHhhccCccEEEeccCCCCCccCcccccCccCCcEEEeecCCCceEecCCCCccccCCCcc
Q 039808          116 QGKCLRFINGENIP---DAVLQILACCTAFYLDNHLHINSLSDFGVRSINGLKFCIISECPKIETVVDGKELTTVIFPSL  192 (358)
Q Consensus       116 ~L~~L~l~~~~~~~---~~~~~~l~~L~~L~l~~~~~~~~l~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L  192 (358)
                      .++.++++...-..   ..+.....+|+.|++.+..--+.+.. .+.+=.+|+.|+|+.|.++.+.  ....-...+..|
T Consensus       186 Rlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~-~iAkN~~L~~lnlsm~sG~t~n--~~~ll~~scs~L  262 (419)
T KOG2120|consen  186 RLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVN-TIAKNSNLVRLNLSMCSGFTEN--ALQLLLSSCSRL  262 (419)
T ss_pred             hhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHH-HHhccccceeeccccccccchh--HHHHHHHhhhhH
Confidence            46666665543111   12334456788888887733333332 5677789999999999887642  101113467899


Q ss_pred             ceeecccccccccccccccCCCcCccccEEeEecCCCcccc-CchhhhccCCCccEEEEecCCccccccccccccccccc
Q 039808          193 ENLSIHHLWNLTHICEGSVPNGSFARLRILSVHACPKLKFV-FSSFMIHFMSNLEDLTVEDCPAIEEIISEGEIIDSGCT  271 (358)
Q Consensus       193 ~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l-~~~~~l~~l~~L~~L~i~~c~~l~~i~~~~~~~~~~~~  271 (358)
                      .+|.+++|.-.... .......-=++|+.|++++|.+--.. -.......+|+|.+|++++|..++.-..      ..+.
T Consensus       263 ~~LNlsWc~l~~~~-Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~------~~~~  335 (419)
T KOG2120|consen  263 DELNLSWCFLFTEK-VTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCF------QEFF  335 (419)
T ss_pred             hhcCchHhhccchh-hhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHH------HHHH
Confidence            99999999765542 11100112268999999998643221 1123557899999999999988875221      3567


Q ss_pred             cCCCcceeccccccccccccCC-----CCCCccEEeeeCCcC
Q 039808          272 ALPRLKKLTLHYLPGLVTIWSS-----AWPSLEYVSFYDCPR  308 (358)
Q Consensus       272 ~l~~L~~L~l~~c~~L~~~~~~-----~~~~L~~L~i~~C~~  308 (358)
                      .|+-|++|.++.|-.+-  |..     ..|+|.+|++.||-.
T Consensus       336 kf~~L~~lSlsRCY~i~--p~~~~~l~s~psl~yLdv~g~vs  375 (419)
T KOG2120|consen  336 KFNYLQHLSLSRCYDII--PETLLELNSKPSLVYLDVFGCVS  375 (419)
T ss_pred             hcchheeeehhhhcCCC--hHHeeeeccCcceEEEEeccccC
Confidence            89999999999995332  221     789999999999853

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=97.88  E-value=5.5e-06  Score=68.60  Aligned_cols=58  Identities=22%  Similarity=0.358  Sum_probs=24.6

Q ss_pred             CCceEEeeCCC--CChHHHHhhccCccEEEeccCCCCCccCcc-cccCccCCcEEEeecCCC
Q 039808          116 QGKCLRFINGE--NIPDAVLQILACCTAFYLDNHLHINSLSDF-GVRSINGLKFCIISECPK  174 (358)
Q Consensus       116 ~L~~L~l~~~~--~~~~~~~~~l~~L~~L~l~~~~~~~~l~~~-~l~~l~~L~~L~l~~~~~  174 (358)
                      .|+.|.+.++.  .+...+...+++|+.|++.++ .+..+.+. .+..+++|+.|++.+|+-
T Consensus        65 ~L~~L~L~~N~I~~i~~~l~~~lp~L~~L~L~~N-~I~~l~~l~~L~~l~~L~~L~L~~NPv  125 (175)
T PF14580_consen   65 RLKTLDLSNNRISSISEGLDKNLPNLQELYLSNN-KISDLNELEPLSSLPKLRVLSLEGNPV  125 (175)
T ss_dssp             T--EEE--SS---S-CHHHHHH-TT--EEE-TTS----SCCCCGGGGG-TT--EEE-TT-GG
T ss_pred             hhhhcccCCCCCCccccchHHhCCcCCEEECcCC-cCCChHHhHHHHcCCCcceeeccCCcc
Confidence            55666665553  333333445777888887777 66555443 567778888888877754

>PRK15386 type III secretion protein GogB; Provisional

Probab=97.84  E-value=0.00012  Score=68.22  Aligned_cols=135  Identities=19%  Similarity=0.245  Sum_probs=72.9

Q ss_pred             ccCccEEEeccCCCCCccCcccccCccCCcEEEeecCCCceEecCCCCccccCCCccceeecccccccccccccccCCCc
Q 039808          136 LACCTAFYLDNHLHINSLSDFGVRSINGLKFCIISECPKIETVVDGKELTTVIFPSLENLSIHHLWNLTHICEGSVPNGS  215 (358)
Q Consensus       136 l~~L~~L~l~~~~~~~~l~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~  215 (358)
                      ..+++.|++.+| .+..++..    ..+|++|.+++|..+..+++.      ..++|++|.+.+|..+..+         
T Consensus        51 ~~~l~~L~Is~c-~L~sLP~L----P~sLtsL~Lsnc~nLtsLP~~------LP~nLe~L~Ls~Cs~L~sL---------  110 (426)
T PRK15386         51 ARASGRLYIKDC-DIESLPVL----PNELTEITIENCNNLTTLPGS------IPEGLEKLTVCHCPEISGL---------  110 (426)
T ss_pred             hcCCCEEEeCCC-CCcccCCC----CCCCcEEEccCCCCcccCCch------hhhhhhheEccCccccccc---------
Confidence            467778888877 66666531    236888888888777665432      2357888888887666543         


Q ss_pred             CccccEEeEecCCCccccCchhhhccC-CCccEEEEecCCccccccccccccccccccC-CCcceeccccccccccccCC
Q 039808          216 FARLRILSVHACPKLKFVFSSFMIHFM-SNLEDLTVEDCPAIEEIISEGEIIDSGCTAL-PRLKKLTLHYLPGLVTIWSS  293 (358)
Q Consensus       216 ~~~L~~L~l~~c~~l~~l~~~~~l~~l-~~L~~L~i~~c~~l~~i~~~~~~~~~~~~~l-~~L~~L~l~~c~~L~~~~~~  293 (358)
                      .++|+.|++.. ..+..+      ..+ ++|+.|.+.+........        ....+ ++|+.|.+.+|..+. +|..
T Consensus       111 P~sLe~L~L~~-n~~~~L------~~LPssLk~L~I~~~n~~~~~~--------lp~~LPsSLk~L~Is~c~~i~-LP~~  174 (426)
T PRK15386        111 PESVRSLEIKG-SATDSI------KNVPNGLTSLSINSYNPENQAR--------IDNLISPSLKTLSLTGCSNII-LPEK  174 (426)
T ss_pred             ccccceEEeCC-CCCccc------ccCcchHhheeccccccccccc--------cccccCCcccEEEecCCCccc-Cccc
Confidence            14566676642 222211      122 255566654322111000        01123 357777776665442 2322


Q ss_pred             CCCCccEEeeeCC
Q 039808          294 AWPSLEYVSFYDC  306 (358)
Q Consensus       294 ~~~~L~~L~i~~C  306 (358)
                      -..+|+.|++..+
T Consensus       175 LP~SLk~L~ls~n  187 (426)
T PRK15386        175 LPESLQSITLHIE  187 (426)
T ss_pred             ccccCcEEEeccc
Confidence            3356666666554

>KOG4341 consensus F-box protein containing LRR [General function prediction only]

Probab=97.82  E-value=1.6e-06  Score=79.06  Aligned_cols=149  Identities=16%  Similarity=0.154  Sum_probs=79.9

Q ss_pred             CccCCcEEEeecCCCceEecCCCCccccCCCccceeecccccccccccccccCCCcCccccEEeEecCCCccccCchhhh
Q 039808          160 SINGLKFCIISECPKIETVVDGKELTTVIFPSLENLSIHHLWNLTHICEGSVPNGSFARLRILSVHACPKLKFVFSSFMI  239 (358)
Q Consensus       160 ~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~l  239 (358)
                      .+..|+.|..++|..+.+.+-+.  -...-++|+.|.+++|..+......... .+.++|+.+++.+|....+.--....
T Consensus       292 ~c~~lq~l~~s~~t~~~d~~l~a--Lg~~~~~L~~l~l~~c~~fsd~~ft~l~-rn~~~Le~l~~e~~~~~~d~tL~sls  368 (483)
T KOG4341|consen  292 GCHALQVLCYSSCTDITDEVLWA--LGQHCHNLQVLELSGCQQFSDRGFTMLG-RNCPHLERLDLEECGLITDGTLASLS  368 (483)
T ss_pred             hhhHhhhhcccCCCCCchHHHHH--HhcCCCceEEEeccccchhhhhhhhhhh-cCChhhhhhcccccceehhhhHhhhc
Confidence            45566777777766543211100  0123467777777777665543211111 23467777777777655543111223


Q ss_pred             ccCCCccEEEEecCCccccccccccccccccccCCCcceeccccccccccccCC---CCCCccEEeeeCCcCCCccC
Q 039808          240 HFMSNLEDLTVEDCPAIEEIISEGEIIDSGCTALPRLKKLTLHYLPGLVTIWSS---AWPSLEYVSFYDCPRLKNIG  313 (358)
Q Consensus       240 ~~l~~L~~L~i~~c~~l~~i~~~~~~~~~~~~~l~~L~~L~l~~c~~L~~~~~~---~~~~L~~L~i~~C~~L~~lP  313 (358)
                      .+++.|+.|.++.|..+.+-..  -..+....+...|+.+++++||.+++-.-+   .+++|+.+++.+|....+=|
T Consensus       369 ~~C~~lr~lslshce~itD~gi--~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l~~~q~vtk~~  443 (483)
T KOG4341|consen  369 RNCPRLRVLSLSHCELITDEGI--RHLSSSSCSLEGLEVLELDNCPLITDATLEHLSICRNLERIELIDCQDVTKEA  443 (483)
T ss_pred             cCCchhccCChhhhhhhhhhhh--hhhhhccccccccceeeecCCCCchHHHHHHHhhCcccceeeeechhhhhhhh
Confidence            4667777777777766543200  000112334556777777777766654443   56777777777776655544

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=97.79  E-value=1.3e-05  Score=66.44  Aligned_cols=126  Identities=21%  Similarity=0.290  Sum_probs=37.5

Q ss_pred             CCceEEeeCCCCCh-HHHHhhccCccEEEeccCCCCCccCcccccCccCCcEEEeecCCCceEecCCCCccccCCCccce
Q 039808          116 QGKCLRFINGENIP-DAVLQILACCTAFYLDNHLHINSLSDFGVRSINGLKFCIISECPKIETVVDGKELTTVIFPSLEN  194 (358)
Q Consensus       116 ~L~~L~l~~~~~~~-~~~~~~l~~L~~L~l~~~~~~~~l~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~  194 (358)
                      +++.|.+.++.-.. ......+.+++.|++.++ .+..++  .+..+++|++|++++|. +..+.+.   -...+|+|++
T Consensus        20 ~~~~L~L~~n~I~~Ie~L~~~l~~L~~L~Ls~N-~I~~l~--~l~~L~~L~~L~L~~N~-I~~i~~~---l~~~lp~L~~   92 (175)
T PF14580_consen   20 KLRELNLRGNQISTIENLGATLDKLEVLDLSNN-QITKLE--GLPGLPRLKTLDLSNNR-ISSISEG---LDKNLPNLQE   92 (175)
T ss_dssp             ----------------S--TT-TT--EEE-TTS---S--T--T----TT--EEE--SS----S-CHH---HHHH-TT--E
T ss_pred             ccccccccccccccccchhhhhcCCCEEECCCC-CCcccc--CccChhhhhhcccCCCC-CCccccc---hHHhCCcCCE
Confidence            55666665543111 112224677888888888 777776  36778888888887763 3333111   0124677777


Q ss_pred             eecccccccccccccccCCCcCccccEEeEecCCCcccc-CchhhhccCCCccEEEE
Q 039808          195 LSIHHLWNLTHICEGSVPNGSFARLRILSVHACPKLKFV-FSSFMIHFMSNLEDLTV  250 (358)
Q Consensus       195 L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l-~~~~~l~~l~~L~~L~i  250 (358)
                      |.+.+. .+..+. .-.....+++|+.|++.++|-...- .....+..+|+|+.|+-
T Consensus        93 L~L~~N-~I~~l~-~l~~L~~l~~L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk~LD~  147 (175)
T PF14580_consen   93 LYLSNN-KISDLN-ELEPLSSLPKLRVLSLEGNPVCEKKNYRLFVIYKLPSLKVLDG  147 (175)
T ss_dssp             EE-TTS----SCC-CCGGGGG-TT--EEE-TT-GGGGSTTHHHHHHHH-TT-SEETT
T ss_pred             EECcCC-cCCChH-HhHHHHcCCCcceeeccCCcccchhhHHHHHHHHcChhheeCC
Confidence            777553 222211 1112335666777777665532210 11223455666666653

>PRK15386 type III secretion protein GogB; Provisional

Probab=97.74  E-value=0.00011  Score=68.58  Aligned_cols=134  Identities=20%  Similarity=0.285  Sum_probs=85.7

Q ss_pred             ccCccCCcEEEeecCCCceEecCCCCccccCCCccceeecccccccccccccccCCCcCccccEEeEecCCCccccCchh
Q 039808          158 VRSINGLKFCIISECPKIETVVDGKELTTVIFPSLENLSIHHLWNLTHICEGSVPNGSFARLRILSVHACPKLKFVFSSF  237 (358)
Q Consensus       158 l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~  237 (358)
                      +..+++++.|+|++| .+..++       ...++|++|.+.+|..++.++..     -.++|++|.+.+|..+..++   
T Consensus        48 ~~~~~~l~~L~Is~c-~L~sLP-------~LP~sLtsL~Lsnc~nLtsLP~~-----LP~nLe~L~Ls~Cs~L~sLP---  111 (426)
T PRK15386         48 IEEARASGRLYIKDC-DIESLP-------VLPNELTEITIENCNNLTTLPGS-----IPEGLEKLTVCHCPEISGLP---  111 (426)
T ss_pred             HHHhcCCCEEEeCCC-CCcccC-------CCCCCCcEEEccCCCCcccCCch-----hhhhhhheEccCcccccccc---
Confidence            445688999999999 666553       12357999999999998776421     13689999999998777541   


Q ss_pred             hhccCCCccEEEEecCCccccccccccccccccccCC-CcceeccccccccccccCC--CCCCccEEeeeCCcCCCccCC
Q 039808          238 MIHFMSNLEDLTVEDCPAIEEIISEGEIIDSGCTALP-RLKKLTLHYLPGLVTIWSS--AWPSLEYVSFYDCPRLKNIGL  314 (358)
Q Consensus       238 ~l~~l~~L~~L~i~~c~~l~~i~~~~~~~~~~~~~l~-~L~~L~l~~c~~L~~~~~~--~~~~L~~L~i~~C~~L~~lP~  314 (358)
                           ++|+.|++.. .....           +..+| +|+.|.+.++.........  -.++|++|.|.+|..+. +|.
T Consensus       112 -----~sLe~L~L~~-n~~~~-----------L~~LPssLk~L~I~~~n~~~~~~lp~~LPsSLk~L~Is~c~~i~-LP~  173 (426)
T PRK15386        112 -----ESVRSLEIKG-SATDS-----------IKNVPNGLTSLSINSYNPENQARIDNLISPSLKTLSLTGCSNII-LPE  173 (426)
T ss_pred             -----cccceEEeCC-CCCcc-----------cccCcchHhheeccccccccccccccccCCcccEEEecCCCccc-Ccc
Confidence                 3577888753 23222           23343 6888888543222111111  34799999999998653 454


Q ss_pred             CCCCCCCeeEEEe
Q 039808          315 GSNLKHSVMEIKA  327 (358)
Q Consensus       315 ~~~~~~~L~~~~~  327 (358)
                      .+.  .+|+.+..
T Consensus       174 ~LP--~SLk~L~l  184 (426)
T PRK15386        174 KLP--ESLQSITL  184 (426)
T ss_pred             ccc--ccCcEEEe
Confidence            322  34555543

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]

Probab=97.67  E-value=9.6e-06  Score=71.17  Aligned_cols=60  Identities=22%  Similarity=0.259  Sum_probs=31.1

Q ss_pred             CccccEEeEecCCCccccCchhhhccCCCccEEEEecCCccccccccccccccccccCCCcceecccccc
Q 039808          216 FARLRILSVHACPKLKFVFSSFMIHFMSNLEDLTVEDCPAIEEIISEGEIIDSGCTALPRLKKLTLHYLP  285 (358)
Q Consensus       216 ~~~L~~L~l~~c~~l~~l~~~~~l~~l~~L~~L~i~~c~~l~~i~~~~~~~~~~~~~l~~L~~L~l~~c~  285 (358)
                      +.+.++|.+... .++.+   ..++.+=+|+.|++.+. .++.+-     ....++.+|-|+.+.+.+.|
T Consensus       351 LGNIKtL~La~N-~iE~L---SGL~KLYSLvnLDl~~N-~Ie~ld-----eV~~IG~LPCLE~l~L~~NP  410 (490)
T KOG1259|consen  351 LGNIKTLKLAQN-KIETL---SGLRKLYSLVNLDLSSN-QIEELD-----EVNHIGNLPCLETLRLTGNP  410 (490)
T ss_pred             hcCEeeeehhhh-hHhhh---hhhHhhhhheecccccc-chhhHH-----HhcccccccHHHHHhhcCCC
Confidence            445566665542 33333   33455666666666653 222211     01256677777777776654

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=97.67  E-value=6.9e-05  Score=50.60  Aligned_cols=35  Identities=29%  Similarity=0.478  Sum_probs=15.5

Q ss_pred             ccCCCcceeccccccccccccCC---CCCCccEEeeeCC
Q 039808          271 TALPRLKKLTLHYLPGLVTIWSS---AWPSLEYVSFYDC  306 (358)
Q Consensus       271 ~~l~~L~~L~l~~c~~L~~~~~~---~~~~L~~L~i~~C  306 (358)
                      ..+++|+.|+++++ .++.++..   ++++|++|++++|
T Consensus        22 ~~l~~L~~L~l~~N-~l~~i~~~~f~~l~~L~~L~l~~N   59 (61)
T PF13855_consen   22 SNLPNLETLDLSNN-NLTSIPPDAFSNLPNLRYLDLSNN   59 (61)
T ss_dssp             TTGTTESEEEETSS-SESEEETTTTTTSTTESEEEETSS
T ss_pred             cCCCCCCEeEccCC-ccCccCHHHHcCCCCCCEEeCcCC
Confidence            34444444444322 34444433   4444444444444

...

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]

Probab=97.61  E-value=2.3e-05  Score=72.12  Aligned_cols=208  Identities=16%  Similarity=0.115  Sum_probs=103.3

Q ss_pred             hcCccccEEEeeecCCCcceecccchhh--hhhcCCCCCceEEEEccCchhHHHHHhhhccccccccceEEEEEeCcccc
Q 039808           23 SRLHALKTLSIVVYPGDKRWYKDVKSVV--LEVCNLTELSSLCFHFPEIKLLELFLQRCVAWNAQCLTEFRIVVGHDIKN  100 (358)
Q Consensus        23 ~~L~~L~~L~l~~~~~~~~~~~~~~~~~--~~l~~l~~L~~L~~~~~~l~~l~~~~~~~~~~~~~~L~~l~i~~~~~~~~  100 (358)
                      +++.+|++..+.+++        ++...  .....|++.+.|+++.+-+......+.-+.  .+++|+.|.+..+-.   
T Consensus       118 sn~kkL~~IsLdn~~--------V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~e--qLp~Le~LNls~Nrl---  184 (505)
T KOG3207|consen  118 SNLKKLREISLDNYR--------VEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAE--QLPSLENLNLSSNRL---  184 (505)
T ss_pred             hhHHhhhheeecCcc--------ccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHH--hcccchhcccccccc---
Confidence            356666666666522        11111  345667777777765443332221111000  345555554421100   


Q ss_pred             ccccCCcccccccccCCceEEeeCCCCC---hHHHHhhccCccEEEeccCCCCCccCcccccCccCCcEEEeecCCCceE
Q 039808          101 IVSRVPDAVAFDYNKQGKCLRFINGENI---PDAVLQILACCTAFYLDNHLHINSLSDFGVRSINGLKFCIISECPKIET  177 (358)
Q Consensus       101 ~~~~~~~~~~l~~~~~L~~L~l~~~~~~---~~~~~~~l~~L~~L~l~~~~~~~~l~~~~l~~l~~L~~L~l~~~~~~~~  177 (358)
                        ..+.+...-..+.++..|.+.+|.-.   ..++...++++..|++..+..+. ....+...+..|++|+|+++..+..
T Consensus       185 --~~~~~s~~~~~l~~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~-~~~~~~~i~~~L~~LdLs~N~li~~  261 (505)
T KOG3207|consen  185 --SNFISSNTTLLLSHLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIIL-IKATSTKILQTLQELDLSNNNLIDF  261 (505)
T ss_pred             --cCCccccchhhhhhhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccc-eecchhhhhhHHhhccccCCccccc
Confidence              00000011123446777777776421   12445567888888888774221 1112456677888888888765542


Q ss_pred             ecCCCCccccCCCccceeeccccccccccccccc----CCCcCccccEEeEecCCCccccCchhhhccCCCccEEEEe
Q 039808          178 VVDGKELTTVIFPSLENLSIHHLWNLTHICEGSV----PNGSFARLRILSVHACPKLKFVFSSFMIHFMSNLEDLTVE  251 (358)
Q Consensus       178 ~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~----~~~~~~~L~~L~l~~c~~l~~l~~~~~l~~l~~L~~L~i~  251 (358)
                         +.......||.|..|.+..+. +.++-..+.    ....|++|++|.+...+- .....-.-+..+++|+.|.+.
T Consensus       262 ---~~~~~~~~l~~L~~Lnls~tg-i~si~~~d~~s~~kt~~f~kL~~L~i~~N~I-~~w~sl~~l~~l~nlk~l~~~  334 (505)
T KOG3207|consen  262 ---DQGYKVGTLPGLNQLNLSSTG-IASIAEPDVESLDKTHTFPKLEYLNISENNI-RDWRSLNHLRTLENLKHLRIT  334 (505)
T ss_pred             ---ccccccccccchhhhhccccC-cchhcCCCccchhhhcccccceeeecccCcc-ccccccchhhccchhhhhhcc
Confidence               112235567888887776642 233211111    013578888888876542 221111233455666666543

>KOG4341 consensus F-box protein containing LRR [General function prediction only]

Probab=97.48  E-value=1.7e-06  Score=78.88  Aligned_cols=171  Identities=14%  Similarity=0.152  Sum_probs=97.4

Q ss_pred             CccEEEeccCCCCCccCcc-cccCccCCcEEEeecCCCceEecCCCCcc-ccCCCccceeecccccccccccccccCCCc
Q 039808          138 CCTAFYLDNHLHINSLSDF-GVRSINGLKFCIISECPKIETVVDGKELT-TVIFPSLENLSIHHLWNLTHICEGSVPNGS  215 (358)
Q Consensus       138 ~L~~L~l~~~~~~~~l~~~-~l~~l~~L~~L~l~~~~~~~~~~~~~~~~-~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~  215 (358)
                      .++.|++++|.....-+.. ...++++++.|.+.+|..+.+.   .... ....+.|+.+.+..|..++........ ..
T Consensus       139 ~lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~~iTd~---s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la-~g  214 (483)
T KOG4341|consen  139 FLKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCKKITDS---SLLSLARYCRKLRHLNLHSCSSITDVSLKYLA-EG  214 (483)
T ss_pred             ccccccccccccCCcchhhHHhhhCCchhhhhhhcceeccHH---HHHHHHHhcchhhhhhhcccchhHHHHHHHHH-Hh
Confidence            4666777776544332211 2456777777777777654421   1111 123567777777777776664333222 23


Q ss_pred             CccccEEeEecCCCccccCchhhhccCCCccEEEEecCCcccccc-----ccc------c------ccc----cccccCC
Q 039808          216 FARLRILSVHACPKLKFVFSSFMIHFMSNLEDLTVEDCPAIEEII-----SEG------E------IID----SGCTALP  274 (358)
Q Consensus       216 ~~~L~~L~l~~c~~l~~l~~~~~l~~l~~L~~L~i~~c~~l~~i~-----~~~------~------~~~----~~~~~l~  274 (358)
                      +++|++|+++.|+.+..-.......+...++.+...+|..++.-.     .+.      +      ..+    ....+..
T Consensus       215 C~kL~~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~kGC~e~~le~l~~~~~~~~~i~~lnl~~c~~lTD~~~~~i~~~c~  294 (483)
T KOG4341|consen  215 CRKLKYLNLSWCPQISGNGVQALQRGCKELEKLSLKGCLELELEALLKAAAYCLEILKLNLQHCNQLTDEDLWLIACGCH  294 (483)
T ss_pred             hhhHHHhhhccCchhhcCcchHHhccchhhhhhhhcccccccHHHHHHHhccChHhhccchhhhccccchHHHHHhhhhh
Confidence            577777777777777664344455566666666666665443210     000      0      000    0122356


Q ss_pred             CcceeccccccccccccCC----CCCCccEEeeeCCcCCCcc
Q 039808          275 RLKKLTLHYLPGLVTIWSS----AWPSLEYVSFYDCPRLKNI  312 (358)
Q Consensus       275 ~L~~L~l~~c~~L~~~~~~----~~~~L~~L~i~~C~~L~~l  312 (358)
                      +|+.+..++|..+.+.+..    +.++|+.+.+.+|..+...
T Consensus       295 ~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~  336 (483)
T KOG4341|consen  295 ALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDR  336 (483)
T ss_pred             HhhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhh
Confidence            7788888888776665544    7788888888888776554

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=97.46  E-value=0.00028  Score=47.56  Aligned_cols=58  Identities=12%  Similarity=0.185  Sum_probs=37.0

Q ss_pred             CccEEEeccCCCCCccCcccccCccCCcEEEeecCCCceEecCCCCccccCCCccceeecccc
Q 039808          138 CCTAFYLDNHLHINSLSDFGVRSINGLKFCIISECPKIETVVDGKELTTVIFPSLENLSIHHL  200 (358)
Q Consensus       138 ~L~~L~l~~~~~~~~l~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~  200 (358)
                      +++.|++.++ .+..++...+.++++|++|++++| .+..++...   ...+++|++|+++++
T Consensus         2 ~L~~L~l~~n-~l~~i~~~~f~~l~~L~~L~l~~N-~l~~i~~~~---f~~l~~L~~L~l~~N   59 (61)
T PF13855_consen    2 NLESLDLSNN-KLTEIPPDSFSNLPNLETLDLSNN-NLTSIPPDA---FSNLPNLRYLDLSNN   59 (61)
T ss_dssp             TESEEEETSS-TESEECTTTTTTGTTESEEEETSS-SESEEETTT---TTTSTTESEEEETSS
T ss_pred             cCcEEECCCC-CCCccCHHHHcCCCCCCEeEccCC-ccCccCHHH---HcCCCCCCEEeCcCC
Confidence            5677777777 777776666777777777777765 444553332   445566666666554

...

>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]

Probab=96.99  E-value=6.4e-05  Score=72.86  Aligned_cols=120  Identities=18%  Similarity=0.087  Sum_probs=69.3

Q ss_pred             ccCccEEEeccCCCCCccCc-ccccCccCCcEEEeecC-CCceEecCCCCccccCCCccceeecccccccccccccccCC
Q 039808          136 LACCTAFYLDNHLHINSLSD-FGVRSINGLKFCIISEC-PKIETVVDGKELTTVIFPSLENLSIHHLWNLTHICEGSVPN  213 (358)
Q Consensus       136 l~~L~~L~l~~~~~~~~l~~-~~l~~l~~L~~L~l~~~-~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~  213 (358)
                      .+.++.+.+.++..+..... .....+++|++|+++.| .................++|+.|.+.++..+...-..... 
T Consensus       187 ~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~-  265 (482)
T KOG1947|consen  187 CPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSALA-  265 (482)
T ss_pred             CchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHHH-
Confidence            46677777777765554221 13566778888888763 2222111111111334577777877777654443211111 


Q ss_pred             CcCccccEEeEecCCCccccCchhhhccCCCccEEEEecCCcc
Q 039808          214 GSFARLRILSVHACPKLKFVFSSFMIHFMSNLEDLTVEDCPAI  256 (358)
Q Consensus       214 ~~~~~L~~L~l~~c~~l~~l~~~~~l~~l~~L~~L~i~~c~~l  256 (358)
                      ...++|+.|.+.+|..+++.+-..+...+++|++|+|+.|..+
T Consensus       266 ~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~  308 (482)
T KOG1947|consen  266 SRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGL  308 (482)
T ss_pred             hhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccc
Confidence            1256788888777877666544455667778888888887776

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=96.78  E-value=0.00037  Score=70.14  Aligned_cols=130  Identities=18%  Similarity=0.104  Sum_probs=61.4

Q ss_pred             cCCcEEEeecCCCceEecCCCCccccCCCccceeecccccccccccccccCCCcCccccEEeEecCCCccccCchhhhcc
Q 039808          162 NGLKFCIISECPKIETVVDGKELTTVIFPSLENLSIHHLWNLTHICEGSVPNGSFARLRILSVHACPKLKFVFSSFMIHF  241 (358)
Q Consensus       162 ~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~l~~  241 (358)
                      .+|++|+|++......  ++...-...||+|++|.+.+..-...-  ...-..+||+|+.|+|+++ .++.+   ..+++
T Consensus       122 ~nL~~LdI~G~~~~s~--~W~~kig~~LPsL~sL~i~~~~~~~~d--F~~lc~sFpNL~sLDIS~T-nI~nl---~GIS~  193 (699)
T KOG3665|consen  122 QNLQHLDISGSELFSN--GWPKKIGTMLPSLRSLVISGRQFDNDD--FSQLCASFPNLRSLDISGT-NISNL---SGISR  193 (699)
T ss_pred             HhhhhcCccccchhhc--cHHHHHhhhCcccceEEecCceecchh--HHHHhhccCccceeecCCC-CccCc---HHHhc
Confidence            3666666655322210  111111234677777777653221110  0000135677777777764 45544   44566


Q ss_pred             CCCccEEEEecCCccccccccccccccccccCCCcceeccccccccccc-----cCC---CCCCccEEeeeC
Q 039808          242 MSNLEDLTVEDCPAIEEIISEGEIIDSGCTALPRLKKLTLHYLPGLVTI-----WSS---AWPSLEYVSFYD  305 (358)
Q Consensus       242 l~~L~~L~i~~c~~l~~i~~~~~~~~~~~~~l~~L~~L~l~~c~~L~~~-----~~~---~~~~L~~L~i~~  305 (358)
                      +.+|+.|.+.+..--.. .     .=.....+.+|+.|+++.-.+...-     +.+   .+|.|+.|+.+|
T Consensus       194 LknLq~L~mrnLe~e~~-~-----~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSg  259 (699)
T KOG3665|consen  194 LKNLQVLSMRNLEFESY-Q-----DLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSG  259 (699)
T ss_pred             cccHHHHhccCCCCCch-h-----hHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCC
Confidence            66666666554321110 0     0012446677777777543222211     111   567777777665

>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]

Probab=96.70  E-value=0.00063  Score=61.13  Aligned_cols=34  Identities=21%  Similarity=0.139  Sum_probs=17.9

Q ss_pred             CCCcceeccccccccccccCC-------CCCCccEEeeeCCc
Q 039808          273 LPRLKKLTLHYLPGLVTIWSS-------AWPSLEYVSFYDCP  307 (358)
Q Consensus       273 l~~L~~L~l~~c~~L~~~~~~-------~~~~L~~L~i~~C~  307 (358)
                      +|+|+.|.+.++ .++.-...       ..|.|++|.+++|.
T Consensus       269 ~p~L~vl~l~gN-eIt~da~~~la~~~~ek~dL~kLnLngN~  309 (382)
T KOG1909|consen  269 APSLEVLELAGN-EITRDAALALAACMAEKPDLEKLNLNGNR  309 (382)
T ss_pred             CCCCceeccCcc-hhHHHHHHHHHHHHhcchhhHHhcCCccc
Confidence            666666666554 22211111       45666666666664

>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]

Probab=96.55  E-value=0.00032  Score=63.97  Aligned_cols=88  Identities=18%  Similarity=0.186  Sum_probs=58.7

Q ss_pred             HHhhccCccEEEeccCCCCCccCcccccCccCCcEEEeecCCCceEecCCCCccccCCCccceeeccccccccccccccc
Q 039808          132 VLQILACCTAFYLDNHLHINSLSDFGVRSINGLKFCIISECPKIETVVDGKELTTVIFPSLENLSIHHLWNLTHICEGSV  211 (358)
Q Consensus       132 ~~~~l~~L~~L~l~~~~~~~~l~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~  211 (358)
                      -++.+++|++|.+.++ .++.+.+.++.+...+++|.+..+ +++.+.+.+   ...+..|+.|++.+-. ++.+  .+.
T Consensus       269 cf~~L~~L~~lnlsnN-~i~~i~~~aFe~~a~l~eL~L~~N-~l~~v~~~~---f~~ls~L~tL~L~~N~-it~~--~~~  340 (498)
T KOG4237|consen  269 CFKKLPNLRKLNLSNN-KITRIEDGAFEGAAELQELYLTRN-KLEFVSSGM---FQGLSGLKTLSLYDNQ-ITTV--APG  340 (498)
T ss_pred             HHhhcccceEeccCCC-ccchhhhhhhcchhhhhhhhcCcc-hHHHHHHHh---hhccccceeeeecCCe-eEEE--ecc
Confidence            3566888888888888 788887778888888888888776 455543332   4556778888887743 3332  122


Q ss_pred             CCCcCccccEEeEecC
Q 039808          212 PNGSFARLRILSVHAC  227 (358)
Q Consensus       212 ~~~~~~~L~~L~l~~c  227 (358)
                      .+....+|.+|.+-..
T Consensus       341 aF~~~~~l~~l~l~~N  356 (498)
T KOG4237|consen  341 AFQTLFSLSTLNLLSN  356 (498)
T ss_pred             cccccceeeeeehccC
Confidence            3344566777777543

>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]

Probab=96.48  E-value=7.2e-05  Score=73.07  Aligned_cols=109  Identities=13%  Similarity=0.075  Sum_probs=61.2

Q ss_pred             ccccccCCceEEeeCCCCChHHHHhhccCccEEEeccCCCCCccCcccccCccCCcEEEeecCCCceEecCCCCccccCC
Q 039808          110 AFDYNKQGKCLRFINGENIPDAVLQILACCTAFYLDNHLHINSLSDFGVRSINGLKFCIISECPKIETVVDGKELTTVIF  189 (358)
Q Consensus       110 ~l~~~~~L~~L~l~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~l~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l  189 (358)
                      ++..++.++.|++..+.-........+++|++|+++.+ .+..++.+....+. |+.|.+++|. ++.+.+     +..+
T Consensus       182 SLqll~ale~LnLshNk~~~v~~Lr~l~~LkhLDlsyN-~L~~vp~l~~~gc~-L~~L~lrnN~-l~tL~g-----ie~L  253 (1096)
T KOG1859|consen  182 SLQLLPALESLNLSHNKFTKVDNLRRLPKLKHLDLSYN-CLRHVPQLSMVGCK-LQLLNLRNNA-LTTLRG-----IENL  253 (1096)
T ss_pred             HHHHHHHhhhhccchhhhhhhHHHHhcccccccccccc-hhccccccchhhhh-heeeeecccH-HHhhhh-----HHhh
Confidence            44445566777776665333345566788888888877 77777765555555 8888887763 332211     3456


Q ss_pred             CccceeecccccccccccccccCCCcCccccEEeEecCC
Q 039808          190 PSLENLSIHHLWNLTHICEGSVPNGSFARLRILSVHACP  228 (358)
Q Consensus       190 ~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~  228 (358)
                      .+|+.|+++..--.++--..+  ...+..|+.|.+.+.|
T Consensus       254 ksL~~LDlsyNll~~hseL~p--LwsLs~L~~L~LeGNP  290 (1096)
T KOG1859|consen  254 KSLYGLDLSYNLLSEHSELEP--LWSLSSLIVLWLEGNP  290 (1096)
T ss_pred             hhhhccchhHhhhhcchhhhH--HHHHHHHHHHhhcCCc
Confidence            667777665422111111111  1244566677766654

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]

Probab=96.35  E-value=0.00063  Score=60.02  Aligned_cols=85  Identities=21%  Similarity=0.119  Sum_probs=45.9

Q ss_pred             cccccCCceEEeeCCC-CChHHHHhhccCccEEEeccCCCCCccCcccccCccCCcEEEeecCCCceEecCCCCccccCC
Q 039808          111 FDYNKQGKCLRFINGE-NIPDAVLQILACCTAFYLDNHLHINSLSDFGVRSINGLKFCIISECPKIETVVDGKELTTVIF  189 (358)
Q Consensus       111 l~~~~~L~~L~l~~~~-~~~~~~~~~l~~L~~L~l~~~~~~~~l~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l  189 (358)
                      +..+.+|..|+++++. .-..+....+.+++.|.+..+ .+.+++  .++++-+|..|++++| +++.+ +. -..+..+
T Consensus       325 La~L~~L~~LDLS~N~Ls~~~Gwh~KLGNIKtL~La~N-~iE~LS--GL~KLYSLvnLDl~~N-~Ie~l-de-V~~IG~L  398 (490)
T KOG1259|consen  325 LAELPQLQLLDLSGNLLAECVGWHLKLGNIKTLKLAQN-KIETLS--GLRKLYSLVNLDLSSN-QIEEL-DE-VNHIGNL  398 (490)
T ss_pred             hhhcccceEeecccchhHhhhhhHhhhcCEeeeehhhh-hHhhhh--hhHhhhhheecccccc-chhhH-HH-hcccccc
Confidence            3344455666665543 111222334667777777666 555555  4667777777777765 33332 11 1124566


Q ss_pred             Cccceeeccccc
Q 039808          190 PSLENLSIHHLW  201 (358)
Q Consensus       190 ~~L~~L~l~~~~  201 (358)
                      |+|+.+.+.+.+
T Consensus       399 PCLE~l~L~~NP  410 (490)
T KOG1259|consen  399 PCLETLRLTGNP  410 (490)
T ss_pred             cHHHHHhhcCCC
Confidence            677766665543

>PLN03150 hypothetical protein; Provisional

Probab=96.32  E-value=0.0074  Score=60.67  Aligned_cols=110  Identities=14%  Similarity=0.051  Sum_probs=65.5

Q ss_pred             cceeecccccccccccccccCCCcCccccEEeEecCCCccccCchhhhccCCCccEEEEecCCccccccccccccccccc
Q 039808          192 LENLSIHHLWNLTHICEGSVPNGSFARLRILSVHACPKLKFVFSSFMIHFMSNLEDLTVEDCPAIEEIISEGEIIDSGCT  271 (358)
Q Consensus       192 L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~l~~l~~L~~L~i~~c~~l~~i~~~~~~~~~~~~  271 (358)
                      ++.|.+.++.-...+   +...+.+++|+.|+++++. +....| ..++.+++|+.|+++++.--..++       ..++
T Consensus       420 v~~L~L~~n~L~g~i---p~~i~~L~~L~~L~Ls~N~-l~g~iP-~~~~~l~~L~~LdLs~N~lsg~iP-------~~l~  487 (623)
T PLN03150        420 IDGLGLDNQGLRGFI---PNDISKLRHLQSINLSGNS-IRGNIP-PSLGSITSLEVLDLSYNSFNGSIP-------ESLG  487 (623)
T ss_pred             EEEEECCCCCccccC---CHHHhCCCCCCEEECCCCc-ccCcCC-hHHhCCCCCCEEECCCCCCCCCCc-------hHHh
Confidence            555666554322222   2234567788888887764 433233 245778888888888775544555       3466


Q ss_pred             cCCCcceeccccccccccccCC---CCCCccEEeeeCCcCCCccC
Q 039808          272 ALPRLKKLTLHYLPGLVTIWSS---AWPSLEYVSFYDCPRLKNIG  313 (358)
Q Consensus       272 ~l~~L~~L~l~~c~~L~~~~~~---~~~~L~~L~i~~C~~L~~lP  313 (358)
                      .+++|+.|+++++.--..+|..   ...++..+++.+++.+-..|
T Consensus       488 ~L~~L~~L~Ls~N~l~g~iP~~l~~~~~~~~~l~~~~N~~lc~~p  532 (623)
T PLN03150        488 QLTSLRILNLNGNSLSGRVPAALGGRLLHRASFNFTDNAGLCGIP  532 (623)
T ss_pred             cCCCCCEEECcCCcccccCChHHhhccccCceEEecCCccccCCC
Confidence            7788888888766433345544   23456677777766555544

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=96.30  E-value=0.0048  Score=58.42  Aligned_cols=99  Identities=20%  Similarity=0.296  Sum_probs=49.5

Q ss_pred             CCceEEeeCCC--CChHHHHhhccCccEEEeccCCCCCccCcccccCccCCcEEEeecCCCceEecCCCCccccCCCccc
Q 039808          116 QGKCLRFINGE--NIPDAVLQILACCTAFYLDNHLHINSLSDFGVRSINGLKFCIISECPKIETVVDGKELTTVIFPSLE  193 (358)
Q Consensus       116 ~L~~L~l~~~~--~~~~~~~~~l~~L~~L~l~~~~~~~~l~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~  193 (358)
                      .+..|.+.++.  .++.. ......++.+.+.++.....+.  .+.++.++..+.+.++. +...+..    ...+++++
T Consensus       187 ~L~~L~ls~N~i~~l~~~-~~~~~~L~~l~~~~N~~~~~~~--~~~~~~~l~~l~l~~n~-~~~~~~~----~~~l~~l~  258 (394)
T COG4886         187 NLNNLDLSGNKISDLPPE-IELLSALEELDLSNNSIIELLS--SLSNLKNLSGLELSNNK-LEDLPES----IGNLSNLE  258 (394)
T ss_pred             hhhheeccCCccccCchh-hhhhhhhhhhhhcCCcceecch--hhhhcccccccccCCce-eeeccch----hccccccc
Confidence            45555555543  22221 1234456666666653222222  35666666666654442 2221122    44556677


Q ss_pred             eeecccccccccccccccCCCcCccccEEeEecC
Q 039808          194 NLSIHHLWNLTHICEGSVPNGSFARLRILSVHAC  227 (358)
Q Consensus       194 ~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c  227 (358)
                      +|.+++.. +..++.    .+.+.+++.|++.+.
T Consensus       259 ~L~~s~n~-i~~i~~----~~~~~~l~~L~~s~n  287 (394)
T COG4886         259 TLDLSNNQ-ISSISS----LGSLTNLRELDLSGN  287 (394)
T ss_pred             eecccccc-cccccc----ccccCccCEEeccCc
Confidence            77776643 233211    345677777777664

>PLN03150 hypothetical protein; Provisional

Probab=96.27  E-value=0.009  Score=60.03  Aligned_cols=111  Identities=10%  Similarity=0.029  Sum_probs=71.3

Q ss_pred             CCcEEEeecCCCceEecCCCCccccCCCccceeecccccccccccccccCCCcCccccEEeEecCCCccccCchhhhccC
Q 039808          163 GLKFCIISECPKIETVVDGKELTTVIFPSLENLSIHHLWNLTHICEGSVPNGSFARLRILSVHACPKLKFVFSSFMIHFM  242 (358)
Q Consensus       163 ~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~l~~l  242 (358)
                      .++.|+++++.-...++..    +..+++|+.|+++++.-...+   +...+.+++|+.|+++++. +....| ..++.+
T Consensus       419 ~v~~L~L~~n~L~g~ip~~----i~~L~~L~~L~Ls~N~l~g~i---P~~~~~l~~L~~LdLs~N~-lsg~iP-~~l~~L  489 (623)
T PLN03150        419 FIDGLGLDNQGLRGFIPND----ISKLRHLQSINLSGNSIRGNI---PPSLGSITSLEVLDLSYNS-FNGSIP-ESLGQL  489 (623)
T ss_pred             EEEEEECCCCCccccCCHH----HhCCCCCCEEECCCCcccCcC---ChHHhCCCCCCEEECCCCC-CCCCCc-hHHhcC
Confidence            3677888876543344333    567889999999886543343   2335678899999998874 443334 356789


Q ss_pred             CCccEEEEecCCcccccccccccccccccc-CCCcceecccccccccc
Q 039808          243 SNLEDLTVEDCPAIEEIISEGEIIDSGCTA-LPRLKKLTLHYLPGLVT  289 (358)
Q Consensus       243 ~~L~~L~i~~c~~l~~i~~~~~~~~~~~~~-l~~L~~L~l~~c~~L~~  289 (358)
                      ++|+.|+++++.--..+|       ..++. +.++..+.+.+++.+..
T Consensus       490 ~~L~~L~Ls~N~l~g~iP-------~~l~~~~~~~~~l~~~~N~~lc~  530 (623)
T PLN03150        490 TSLRILNLNGNSLSGRVP-------AALGGRLLHRASFNFTDNAGLCG  530 (623)
T ss_pred             CCCCEEECcCCcccccCC-------hHHhhccccCceEEecCCccccC
Confidence            999999999876554555       12222 33556677766655443

>KOG2982 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.23  E-value=0.0013  Score=58.09  Aligned_cols=124  Identities=13%  Similarity=0.026  Sum_probs=51.4

Q ss_pred             ccCccCCcEEEeecCCCceEecCCCCccccCCCccceeecccccccccccccccCC-CcCccccEEeEecCCCccccCch
Q 039808          158 VRSINGLKFCIISECPKIETVVDGKELTTVIFPSLENLSIHHLWNLTHICEGSVPN-GSFARLRILSVHACPKLKFVFSS  236 (358)
Q Consensus       158 l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~-~~~~~L~~L~l~~c~~l~~l~~~  236 (358)
                      +..+|.+++|+++.|.- ..+-.+.......-+.+++|+...|..  ..|...... .-||++..+.+..|| ++..-..
T Consensus       142 l~~lP~vtelHmS~N~~-rq~n~Dd~c~e~~s~~v~tlh~~~c~~--~~w~~~~~l~r~Fpnv~sv~v~e~P-lK~~s~e  217 (418)
T KOG2982|consen  142 LDDLPKVTELHMSDNSL-RQLNLDDNCIEDWSTEVLTLHQLPCLE--QLWLNKNKLSRIFPNVNSVFVCEGP-LKTESSE  217 (418)
T ss_pred             hhcchhhhhhhhccchh-hhhccccccccccchhhhhhhcCCcHH--HHHHHHHhHHhhcccchheeeecCc-ccchhhc
Confidence            55666666666665521 111111111112223455555555432  112211111 136777777776665 2211111


Q ss_pred             hhhccCCCccEEEEecCCccccccccccccccccccCCCcceecccccccccccc
Q 039808          237 FMIHFMSNLEDLTVEDCPAIEEIISEGEIIDSGCTALPRLKKLTLHYLPGLVTIW  291 (358)
Q Consensus       237 ~~l~~l~~L~~L~i~~c~~l~~i~~~~~~~~~~~~~l~~L~~L~l~~c~~L~~~~  291 (358)
                      .....+|.+-.|.++.. ++.+..+.     .....||+|..|.+.+.|-...+.
T Consensus       218 k~se~~p~~~~LnL~~~-~idswasv-----D~Ln~f~~l~dlRv~~~Pl~d~l~  266 (418)
T KOG2982|consen  218 KGSEPFPSLSCLNLGAN-NIDSWASV-----DALNGFPQLVDLRVSENPLSDPLR  266 (418)
T ss_pred             ccCCCCCcchhhhhccc-ccccHHHH-----HHHcCCchhheeeccCCccccccc
Confidence            11122333333333321 22211100     235566777777766665555443

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=96.11  E-value=0.0064  Score=57.57  Aligned_cols=103  Identities=22%  Similarity=0.265  Sum_probs=47.7

Q ss_pred             cCccEEEeccCCCCCccCcccccCcc-CCcEEEeecCCCceEecCCCCccccCCCccceeecccccccccccccccCCCc
Q 039808          137 ACCTAFYLDNHLHINSLSDFGVRSIN-GLKFCIISECPKIETVVDGKELTTVIFPSLENLSIHHLWNLTHICEGSVPNGS  215 (358)
Q Consensus       137 ~~L~~L~l~~~~~~~~l~~~~l~~l~-~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~  215 (358)
                      +.++.|.+.+. .+..++. ....+. +|++|+++++ .+..++..    ...+++|+.|.+.++.- ..+   +...+.
T Consensus       116 ~~l~~L~l~~n-~i~~i~~-~~~~~~~nL~~L~l~~N-~i~~l~~~----~~~l~~L~~L~l~~N~l-~~l---~~~~~~  184 (394)
T COG4886         116 TNLTSLDLDNN-NITDIPP-LIGLLKSNLKELDLSDN-KIESLPSP----LRNLPNLKNLDLSFNDL-SDL---PKLLSN  184 (394)
T ss_pred             cceeEEecCCc-ccccCcc-ccccchhhccccccccc-chhhhhhh----hhccccccccccCCchh-hhh---hhhhhh
Confidence            45566666555 5555553 133332 6666666654 23333212    34556666666655432 222   111113


Q ss_pred             CccccEEeEecCCCccccCchhhhccCCCccEEEEecC
Q 039808          216 FARLRILSVHACPKLKFVFSSFMIHFMSNLEDLTVEDC  253 (358)
Q Consensus       216 ~~~L~~L~l~~c~~l~~l~~~~~l~~l~~L~~L~i~~c  253 (358)
                      .+.|+.|++++. ++..+++  ......+|++|.+++.
T Consensus       185 ~~~L~~L~ls~N-~i~~l~~--~~~~~~~L~~l~~~~N  219 (394)
T COG4886         185 LSNLNNLDLSGN-KISDLPP--EIELLSALEELDLSNN  219 (394)
T ss_pred             hhhhhheeccCC-ccccCch--hhhhhhhhhhhhhcCC
Confidence            456666666553 3444311  1122333555555544

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=95.99  E-value=0.0024  Score=64.36  Aligned_cols=128  Identities=14%  Similarity=0.095  Sum_probs=83.7

Q ss_pred             CCccceeecccccccccccccccCCCcCccccEEeEecCCCccccCchhhhccCCCccEEEEecCCcccccccccccccc
Q 039808          189 FPSLENLSIHHLWNLTHICEGSVPNGSFARLRILSVHACPKLKFVFSSFMIHFMSNLEDLTVEDCPAIEEIISEGEIIDS  268 (358)
Q Consensus       189 l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~l~~l~~L~~L~i~~c~~l~~i~~~~~~~~~  268 (358)
                      -.+|++|+|++-..+..-|-... ...||+|+.|.+.+-.-...-+ .....++|+|..|+|+++ +++.+.        
T Consensus       121 r~nL~~LdI~G~~~~s~~W~~ki-g~~LPsL~sL~i~~~~~~~~dF-~~lc~sFpNL~sLDIS~T-nI~nl~--------  189 (699)
T KOG3665|consen  121 RQNLQHLDISGSELFSNGWPKKI-GTMLPSLRSLVISGRQFDNDDF-SQLCASFPNLRSLDISGT-NISNLS--------  189 (699)
T ss_pred             HHhhhhcCccccchhhccHHHHH-hhhCcccceEEecCceecchhH-HHHhhccCccceeecCCC-CccCcH--------
Confidence            46899999988555544342221 1358999999998743222111 134578999999999996 565554        


Q ss_pred             ccccCCCcceeccccccccccccCC----CCCCccEEeeeCCcCCCcc--C----CCCCCCCCeeEEEec
Q 039808          269 GCTALPRLKKLTLHYLPGLVTIWSS----AWPSLEYVSFYDCPRLKNI--G----LGSNLKHSVMEIKAE  328 (358)
Q Consensus       269 ~~~~l~~L~~L~l~~c~~L~~~~~~----~~~~L~~L~i~~C~~L~~l--P----~~~~~~~~L~~~~~~  328 (358)
                      +.+.+.+|+.|.+.+.+ ++....-    .+..|+.|+|+.=++...-  .    +...-+|.|+.++|.
T Consensus       190 GIS~LknLq~L~mrnLe-~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcS  258 (699)
T KOG3665|consen  190 GISRLKNLQVLSMRNLE-FESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCS  258 (699)
T ss_pred             HHhccccHHHHhccCCC-CCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecC
Confidence            57889999999998763 3332211    7999999999985433322  1    112236788888773

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=95.98  E-value=0.0055  Score=38.19  Aligned_cols=37  Identities=22%  Similarity=0.192  Sum_probs=17.6

Q ss_pred             cccEEEeeecCCCcceecccchhhhhhcCCCCCceEEEEccCchh
Q 039808           27 ALKTLSIVVYPGDKRWYKDVKSVVLEVCNLTELSSLCFHFPEIKL   71 (358)
Q Consensus        27 ~L~~L~l~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~~~~~~l~~   71 (358)
                      +||+|++++ +.+       +.++.++++|++|++|++..+.++.
T Consensus         2 ~L~~L~l~~-N~i-------~~l~~~l~~l~~L~~L~l~~N~i~~   38 (44)
T PF12799_consen    2 NLEELDLSN-NQI-------TDLPPELSNLPNLETLNLSNNPISD   38 (44)
T ss_dssp             T-SEEEETS-SS--------SSHGGHGTTCTTSSEEEETSSCCSB
T ss_pred             cceEEEccC-CCC-------cccCchHhCCCCCCEEEecCCCCCC
Confidence            455666655 222       2233345566666666665444443

...

>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]

Probab=95.83  E-value=0.00051  Score=65.51  Aligned_cols=79  Identities=24%  Similarity=0.389  Sum_probs=32.5

Q ss_pred             ccCccEEEeccCCCCCccCcccccCccCCcEEEeecCCCceEecCCCCccccCCCccceeecccccccccccccccCCCc
Q 039808          136 LACCTAFYLDNHLHINSLSDFGVRSINGLKFCIISECPKIETVVDGKELTTVIFPSLENLSIHHLWNLTHICEGSVPNGS  215 (358)
Q Consensus       136 l~~L~~L~l~~~~~~~~l~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~  215 (358)
                      +..++.+++..+ .+..++. .+..+ -|+.|.++++ ++..+++.    +...+.|..|+.+.+. +..+   +...+.
T Consensus       120 L~~lt~l~ls~N-qlS~lp~-~lC~l-pLkvli~sNN-kl~~lp~~----ig~~~tl~~ld~s~ne-i~sl---psql~~  187 (722)
T KOG0532|consen  120 LEALTFLDLSSN-QLSHLPD-GLCDL-PLKVLIVSNN-KLTSLPEE----IGLLPTLAHLDVSKNE-IQSL---PSQLGY  187 (722)
T ss_pred             hhHHHHhhhccc-hhhcCCh-hhhcC-cceeEEEecC-ccccCCcc----cccchhHHHhhhhhhh-hhhc---hHHhhh
Confidence            444444555444 4444433 12222 3455555443 33334333    2344445555444432 1221   222334


Q ss_pred             CccccEEeEec
Q 039808          216 FARLRILSVHA  226 (358)
Q Consensus       216 ~~~L~~L~l~~  226 (358)
                      +.+|+.|.+.+
T Consensus       188 l~slr~l~vrR  198 (722)
T KOG0532|consen  188 LTSLRDLNVRR  198 (722)
T ss_pred             HHHHHHHHHhh
Confidence            44555555544

>KOG3864 consensus Uncharacterized conserved protein [Function unknown]

Probab=95.82  E-value=0.00085  Score=55.87  Aligned_cols=70  Identities=20%  Similarity=0.252  Sum_probs=51.0

Q ss_pred             ccCCCccceeecccccccccccccccCCCcCccccEEeEecCCCccccCchhhhccCCCccEEEEecCCccc
Q 039808          186 TVIFPSLENLSIHHLWNLTHICEGSVPNGSFARLRILSVHACPKLKFVFSSFMIHFMSNLEDLTVEDCPAIE  257 (358)
Q Consensus       186 ~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~l~~l~~L~~L~i~~c~~l~  257 (358)
                      +..+++++.|.+.+|..+...+..... +-+++|+.|+|++|+++++.+- ..+..+++|+.|.|.+.+.+.
T Consensus       121 L~~l~~i~~l~l~~ck~~dD~~L~~l~-~~~~~L~~L~lsgC~rIT~~GL-~~L~~lknLr~L~l~~l~~v~  190 (221)
T KOG3864|consen  121 LRDLRSIKSLSLANCKYFDDWCLERLG-GLAPSLQDLDLSGCPRITDGGL-ACLLKLKNLRRLHLYDLPYVA  190 (221)
T ss_pred             HhccchhhhheeccccchhhHHHHHhc-ccccchheeeccCCCeechhHH-HHHHHhhhhHHHHhcCchhhh
Confidence            345677888888888888775544432 2578999999999999887533 356788888888888776553

>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]

Probab=95.50  E-value=0.0016  Score=63.02  Aligned_cols=123  Identities=23%  Similarity=0.231  Sum_probs=77.8

Q ss_pred             ccCccCCcEEEeecCCCceEecCCCCccccCCCccceeecccc-ccccccc--ccccCCCcCccccEEeEecCCCccccC
Q 039808          158 VRSINGLKFCIISECPKIETVVDGKELTTVIFPSLENLSIHHL-WNLTHIC--EGSVPNGSFARLRILSVHACPKLKFVF  234 (358)
Q Consensus       158 l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~-~~l~~~~--~~~~~~~~~~~L~~L~l~~c~~l~~l~  234 (358)
                      ...+++|+.|.+..|..+....  ........+.|++|.+.++ .......  .... ....++|+.+++..|..+++..
T Consensus       184 ~~~~~~L~~l~l~~~~~~~~~~--~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~-~~~~~~L~~l~l~~~~~isd~~  260 (482)
T KOG1947|consen  184 LSSCPLLKRLSLSGCSKITDDS--LDALALKCPNLEELDLSGCCLLITLSPLLLLLL-LSICRKLKSLDLSGCGLVTDIG  260 (482)
T ss_pred             HhhCchhhHhhhcccccCChhh--HHHHHhhCchhheecccCcccccccchhHhhhh-hhhcCCcCccchhhhhccCchh
Confidence            3457899999999887766421  0111345789999999873 2222111  1111 1234889999999988777664


Q ss_pred             chhhhccCCCccEEEEecCCccccccccccccccccccCCCcceeccccccccc
Q 039808          235 SSFMIHFMSNLEDLTVEDCPAIEEIISEGEIIDSGCTALPRLKKLTLHYLPGLV  288 (358)
Q Consensus       235 ~~~~l~~l~~L~~L~i~~c~~l~~i~~~~~~~~~~~~~l~~L~~L~l~~c~~L~  288 (358)
                      -......+++|+.|.+..|..+..-.     ...-...+++|+.|+++.|..++
T Consensus       261 l~~l~~~c~~L~~L~l~~c~~lt~~g-----l~~i~~~~~~L~~L~l~~c~~~~  309 (482)
T KOG1947|consen  261 LSALASRCPNLETLSLSNCSNLTDEG-----LVSIAERCPSLRELDLSGCHGLT  309 (482)
T ss_pred             HHHHHhhCCCcceEccCCCCccchhH-----HHHHHHhcCcccEEeeecCccch
Confidence            44455568899999988888753311     11224557788888888777653

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=95.23  E-value=0.025  Score=35.16  Aligned_cols=35  Identities=20%  Similarity=0.280  Sum_probs=26.2

Q ss_pred             cCccEEEeccCCCCCccCcccccCccCCcEEEeecCC
Q 039808          137 ACCTAFYLDNHLHINSLSDFGVRSINGLKFCIISECP  173 (358)
Q Consensus       137 ~~L~~L~l~~~~~~~~l~~~~l~~l~~L~~L~l~~~~  173 (358)
                      ++|+.|++.++ .+..++. .+++|++|++|++++|.
T Consensus         1 ~~L~~L~l~~N-~i~~l~~-~l~~l~~L~~L~l~~N~   35 (44)
T PF12799_consen    1 KNLEELDLSNN-QITDLPP-ELSNLPNLETLNLSNNP   35 (44)
T ss_dssp             TT-SEEEETSS-S-SSHGG-HGTTCTTSSEEEETSSC
T ss_pred             CcceEEEccCC-CCcccCc-hHhCCCCCCEEEecCCC
Confidence            46788888888 7777774 37889999999998873

...

>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D

Probab=94.35  E-value=0.029  Score=27.10  Aligned_cols=17  Identities=18%  Similarity=0.376  Sum_probs=9.6

Q ss_pred             CCccEEeeeCCcCCCccC
Q 039808          296 PSLEYVSFYDCPRLKNIG  313 (358)
Q Consensus       296 ~~L~~L~i~~C~~L~~lP  313 (358)
                      ++|+.|++++|. ++.+|
T Consensus         1 ~~L~~L~l~~n~-L~~lP   17 (17)
T PF13504_consen    1 PNLRTLDLSNNR-LTSLP   17 (17)
T ss_dssp             TT-SEEEETSS---SSE-
T ss_pred             CccCEEECCCCC-CCCCc
Confidence            467778888876 77766

...

>KOG3864 consensus Uncharacterized conserved protein [Function unknown]

Probab=93.89  E-value=0.011  Score=49.38  Aligned_cols=68  Identities=22%  Similarity=0.304  Sum_probs=45.5

Q ss_pred             cCccccEEeEecCCCccccCchhhhccCCCccEEEEecCCccccccccccccccccccCCCcceeccccccccc
Q 039808          215 SFARLRILSVHACPKLKFVFSSFMIHFMSNLEDLTVEDCPAIEEIISEGEIIDSGCTALPRLKKLTLHYLPGLV  288 (358)
Q Consensus       215 ~~~~L~~L~l~~c~~l~~l~~~~~l~~l~~L~~L~i~~c~~l~~i~~~~~~~~~~~~~l~~L~~L~l~~c~~L~  288 (358)
                      .++.++.|.+.+|..+.+.....+-+-.++|+.|+|++|+.+.+-.-      ..+..|++|+.|.+.+.+...
T Consensus       123 ~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL------~~L~~lknLr~L~l~~l~~v~  190 (221)
T KOG3864|consen  123 DLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGL------ACLLKLKNLRRLHLYDLPYVA  190 (221)
T ss_pred             ccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHH------HHHHHhhhhHHHHhcCchhhh
Confidence            45778888888888777653333344567888888888888765220      135567788888887765444

>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]

Probab=93.63  E-value=0.12  Score=43.51  Aligned_cols=89  Identities=18%  Similarity=0.196  Sum_probs=49.6

Q ss_pred             ccccccCCceEEeeCCC--CChHHHHhhccCccEEEeccCCCCCccCcc-cccCccCCcEEEeecCCCceEecCCCCccc
Q 039808          110 AFDYNKQGKCLRFINGE--NIPDAVLQILACCTAFYLDNHLHINSLSDF-GVRSINGLKFCIISECPKIETVVDGKELTT  186 (358)
Q Consensus       110 ~l~~~~~L~~L~l~~~~--~~~~~~~~~l~~L~~L~l~~~~~~~~l~~~-~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~  186 (358)
                      .+..+..|.+|.+..+.  .+...+..+++++..|.+.++ .+..+.+. .+..++.|++|.+-+++.-. -..-..+.+
T Consensus        59 ~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnN-si~~l~dl~pLa~~p~L~~Ltll~Npv~~-k~~YR~yvl  136 (233)
T KOG1644|consen   59 NLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNN-SIQELGDLDPLASCPKLEYLTLLGNPVEH-KKNYRLYVL  136 (233)
T ss_pred             cCCCccccceEEecCCcceeeccchhhhccccceEEecCc-chhhhhhcchhccCCccceeeecCCchhc-ccCceeEEE
Confidence            33444566666665543  333445566777777777776 55554443 56677777777776654322 112222234


Q ss_pred             cCCCccceeecccc
Q 039808          187 VIFPSLENLSIHHL  200 (358)
Q Consensus       187 ~~l~~L~~L~l~~~  200 (358)
                      ..+|+|+.|++.+-
T Consensus       137 ~klp~l~~LDF~kV  150 (233)
T KOG1644|consen  137 YKLPSLRTLDFQKV  150 (233)
T ss_pred             EecCcceEeehhhh
Confidence            55666666666543

>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]

Probab=93.63  E-value=0.019  Score=55.22  Aligned_cols=33  Identities=15%  Similarity=0.222  Sum_probs=15.5

Q ss_pred             ccEEEeccCCCCCccCcccccCccCCcEEEeecCC
Q 039808          139 CTAFYLDNHLHINSLSDFGVRSINGLKFCIISECP  173 (358)
Q Consensus       139 L~~L~l~~~~~~~~l~~~~l~~l~~L~~L~l~~~~  173 (358)
                      |..|++..+ .+..++. ++.+|+.|++|.+.+|+
T Consensus       213 Li~lDfScN-kis~iPv-~fr~m~~Lq~l~LenNP  245 (722)
T KOG0532|consen  213 LIRLDFSCN-KISYLPV-DFRKMRHLQVLQLENNP  245 (722)
T ss_pred             eeeeecccC-ceeecch-hhhhhhhheeeeeccCC
Confidence            334444333 4444443 35555555555555443

>KOG2982 consensus Uncharacterized conserved protein [Function unknown]

Probab=93.57  E-value=0.11  Score=46.29  Aligned_cols=104  Identities=15%  Similarity=0.206  Sum_probs=62.5

Q ss_pred             ccccEEeEecCCCccccCchhhhccCCCccEEEEecCCccccccccccccccccccCCCcceeccccccccccccCC---
Q 039808          217 ARLRILSVHACPKLKFVFSSFMIHFMSNLEDLTVEDCPAIEEIISEGEIIDSGCTALPRLKKLTLHYLPGLVTIWSS---  293 (358)
Q Consensus       217 ~~L~~L~l~~c~~l~~l~~~~~l~~l~~L~~L~i~~c~~l~~i~~~~~~~~~~~~~l~~L~~L~l~~c~~L~~~~~~---  293 (358)
                      +.+++++...|+-..-.-......-+|++..+.+.+|+ ++...     .+.+...||.+..|.+.. .++.+|..-   
T Consensus       173 ~~v~tlh~~~c~~~~w~~~~~l~r~Fpnv~sv~v~e~P-lK~~s-----~ek~se~~p~~~~LnL~~-~~idswasvD~L  245 (418)
T KOG2982|consen  173 TEVLTLHQLPCLEQLWLNKNKLSRIFPNVNSVFVCEGP-LKTES-----SEKGSEPFPSLSCLNLGA-NNIDSWASVDAL  245 (418)
T ss_pred             hhhhhhhcCCcHHHHHHHHHhHHhhcccchheeeecCc-ccchh-----hcccCCCCCcchhhhhcc-cccccHHHHHHH
Confidence            35566666555422211011222357788888877764 22222     113455677777777743 356666543   


Q ss_pred             -CCCCccEEeeeCCcCCCccCCC------CCCCCCeeEEEe
Q 039808          294 -AWPSLEYVSFYDCPRLKNIGLG------SNLKHSVMEIKA  327 (358)
Q Consensus       294 -~~~~L~~L~i~~C~~L~~lP~~------~~~~~~L~~~~~  327 (358)
                       .|++|..|.+.+.|-...+--+      ++.++.++.+.|
T Consensus       246 n~f~~l~dlRv~~~Pl~d~l~~~err~llIaRL~~v~vLNG  286 (418)
T KOG2982|consen  246 NGFPQLVDLRVSENPLSDPLRGGERRFLLIARLTKVQVLNG  286 (418)
T ss_pred             cCCchhheeeccCCcccccccCCcceEEEEeeccceEEecC
Confidence             8999999999999877776443      245677777766

>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=92.67  E-value=0.064  Score=27.77  Aligned_cols=20  Identities=25%  Similarity=0.353  Sum_probs=15.1

Q ss_pred             CccEEeeeCCcCCCccCCCCC
Q 039808          297 SLEYVSFYDCPRLKNIGLGSN  317 (358)
Q Consensus       297 ~L~~L~i~~C~~L~~lP~~~~  317 (358)
                      +|++|++++| +++.+|....
T Consensus         1 ~L~~Ldls~n-~l~~ip~~~~   20 (22)
T PF00560_consen    1 NLEYLDLSGN-NLTSIPSSFS   20 (22)
T ss_dssp             TESEEEETSS-EESEEGTTTT
T ss_pred             CccEEECCCC-cCEeCChhhc
Confidence            5788888888 6778887654

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....

>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]

Probab=91.94  E-value=0.023  Score=51.42  Aligned_cols=163  Identities=16%  Similarity=0.103  Sum_probs=78.2

Q ss_pred             cCccEEEeccCCCCCc-----cCcccccCccCCcEEEeecCCCceEecCCC----------CccccCCCccceeeccccc
Q 039808          137 ACCTAFYLDNHLHINS-----LSDFGVRSINGLKFCIISECPKIETVVDGK----------ELTTVIFPSLENLSIHHLW  201 (358)
Q Consensus       137 ~~L~~L~l~~~~~~~~-----l~~~~l~~l~~L~~L~l~~~~~~~~~~~~~----------~~~~~~l~~L~~L~l~~~~  201 (358)
                      ++|+.++++++ .+..     +.+ -+..+..|++|.+.+|. +...-+..          ......-+.|+.+...+. 
T Consensus        92 ~~L~~ldLSDN-A~G~~g~~~l~~-ll~s~~~L~eL~L~N~G-lg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rN-  167 (382)
T KOG1909|consen   92 PKLQKLDLSDN-AFGPKGIRGLEE-LLSSCTDLEELYLNNCG-LGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRN-  167 (382)
T ss_pred             CceeEeecccc-ccCccchHHHHH-HHHhccCHHHHhhhcCC-CChhHHHHHHHHHHHHHHHhccCCCcceEEEEeecc-
Confidence            36788888766 3221     222 24567788888887773 32211110          011223356666655442 


Q ss_pred             ccccccccc--cCCCcCccccEEeEecCCCccc-c-CchhhhccCCCccEEEEecCCccccccccccccccccccCCCcc
Q 039808          202 NLTHICEGS--VPNGSFARLRILSVHACPKLKF-V-FSSFMIHFMSNLEDLTVEDCPAIEEIISEGEIIDSGCTALPRLK  277 (358)
Q Consensus       202 ~l~~~~~~~--~~~~~~~~L~~L~l~~c~~l~~-l-~~~~~l~~l~~L~~L~i~~c~~l~~i~~~~~~~~~~~~~l~~L~  277 (358)
                      .++......  ..+...+.|+.+.+....--.. + .....+.++++|+.|++.+.---.+-.   .........+|.|+
T Consensus       168 rlen~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs---~~LakaL~s~~~L~  244 (382)
T KOG1909|consen  168 RLENGGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGS---VALAKALSSWPHLR  244 (382)
T ss_pred             ccccccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHH---HHHHHHhcccchhe
Confidence            121110000  0012235666666655321111 0 001124567778888777653221100   00113456677788


Q ss_pred             eeccccccccccccCC--------CCCCccEEeeeCCc
Q 039808          278 KLTLHYLPGLVTIWSS--------AWPSLEYVSFYDCP  307 (358)
Q Consensus       278 ~L~l~~c~~L~~~~~~--------~~~~L~~L~i~~C~  307 (358)
                      .|++.+| .++.=...        ..|+|+.+.+.+|.
T Consensus       245 El~l~dc-ll~~~Ga~a~~~al~~~~p~L~vl~l~gNe  281 (382)
T KOG1909|consen  245 ELNLGDC-LLENEGAIAFVDALKESAPSLEVLELAGNE  281 (382)
T ss_pred             eeccccc-ccccccHHHHHHHHhccCCCCceeccCcch
Confidence            8888777 34432221        56778888777763

>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]

Probab=91.53  E-value=0.01  Score=58.60  Aligned_cols=42  Identities=19%  Similarity=0.184  Sum_probs=26.2

Q ss_pred             cCccccEEEeeecCCCcceecccchhhhhhcCCCCCceEEEEccCchhHHH
Q 039808           24 RLHALKTLSIVVYPGDKRWYKDVKSVVLEVCNLTELSSLCFHFPEIKLLEL   74 (358)
Q Consensus        24 ~L~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~~~~~~l~~l~~   74 (358)
                      =++.||.|+|++ +.+.        ....++.|++|++|++.++.+..+|.
T Consensus       185 ll~ale~LnLsh-Nk~~--------~v~~Lr~l~~LkhLDlsyN~L~~vp~  226 (1096)
T KOG1859|consen  185 LLPALESLNLSH-NKFT--------KVDNLRRLPKLKHLDLSYNCLRHVPQ  226 (1096)
T ss_pred             HHHHhhhhccch-hhhh--------hhHHHHhcccccccccccchhccccc
Confidence            356677777776 3321        12357777777777777777766653

>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A

Probab=91.30  E-value=0.56  Score=36.26  Aligned_cols=83  Identities=16%  Similarity=0.202  Sum_probs=29.0

Q ss_pred             cccCccCCcEEEeecCCCceEecCCCCccccCCCccceeecccccccccccccccCCCcCccccEEeEecCCCccccCch
Q 039808          157 GVRSINGLKFCIISECPKIETVVDGKELTTVIFPSLENLSIHHLWNLTHICEGSVPNGSFARLRILSVHACPKLKFVFSS  236 (358)
Q Consensus       157 ~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~  236 (358)
                      ++.++.+|+.+.+.+  .++.+....   ....++|+++.+.+  .+..+...  .....++++.+.+.+  .+..+.. 
T Consensus         7 ~F~~~~~l~~i~~~~--~~~~I~~~~---F~~~~~l~~i~~~~--~~~~i~~~--~F~~~~~l~~i~~~~--~~~~i~~-   74 (129)
T PF13306_consen    7 AFYNCSNLESITFPN--TIKKIGENA---FSNCTSLKSINFPN--NLTSIGDN--AFSNCKSLESITFPN--NLKSIGD-   74 (129)
T ss_dssp             TTTT-TT--EEEETS--T--EE-TTT---TTT-TT-SEEEESS--TTSCE-TT--TTTT-TT-EEEEETS--TT-EE-T-
T ss_pred             HHhCCCCCCEEEECC--CeeEeChhh---cccccccccccccc--ccccccee--eeecccccccccccc--ccccccc-
Confidence            455555566655542  333342221   22334455555533  23332111  122333455555533  2222221 


Q ss_pred             hhhccCCCccEEEEe
Q 039808          237 FMIHFMSNLEDLTVE  251 (358)
Q Consensus       237 ~~l~~l~~L~~L~i~  251 (358)
                      ..+..+++|+.+.+.
T Consensus        75 ~~F~~~~~l~~i~~~   89 (129)
T PF13306_consen   75 NAFSNCTNLKNIDIP   89 (129)
T ss_dssp             TTTTT-TTECEEEET
T ss_pred             ccccccccccccccC
Confidence            233445666666653

>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]

Probab=91.18  E-value=0.23  Score=41.72  Aligned_cols=107  Identities=14%  Similarity=0.254  Sum_probs=54.7

Q ss_pred             cCccEEEeccCCCCCccCcccccCccCCcEEEeecCCCceEecCCCCccccCCCccceeecccccccccccccccCCCcC
Q 039808          137 ACCTAFYLDNHLHINSLSDFGVRSINGLKFCIISECPKIETVVDGKELTTVIFPSLENLSIHHLWNLTHICEGSVPNGSF  216 (358)
Q Consensus       137 ~~L~~L~l~~~~~~~~l~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~  216 (358)
                      .+...+++.++ ++..+..  +..++.|.+|.+.+| ++..+-+.   -...+|+|+.|.+.+-. +..+-.- .+.-.+
T Consensus        42 d~~d~iDLtdN-dl~~l~~--lp~l~rL~tLll~nN-rIt~I~p~---L~~~~p~l~~L~LtnNs-i~~l~dl-~pLa~~  112 (233)
T KOG1644|consen   42 DQFDAIDLTDN-DLRKLDN--LPHLPRLHTLLLNNN-RITRIDPD---LDTFLPNLKTLILTNNS-IQELGDL-DPLASC  112 (233)
T ss_pred             cccceeccccc-chhhccc--CCCccccceEEecCC-cceeeccc---hhhhccccceEEecCcc-hhhhhhc-chhccC
Confidence            34455555555 5555442  566677777777665 34444221   02345677777776632 2221100 112346


Q ss_pred             ccccEEeEecCCCccc-cCchhhhccCCCccEEEEec
Q 039808          217 ARLRILSVHACPKLKF-VFSSFMIHFMSNLEDLTVED  252 (358)
Q Consensus       217 ~~L~~L~l~~c~~l~~-l~~~~~l~~l~~L~~L~i~~  252 (358)
                      |.|++|.+-+.+--.. -....++..+|+|+.|+..+
T Consensus       113 p~L~~Ltll~Npv~~k~~YR~yvl~klp~l~~LDF~k  149 (233)
T KOG1644|consen  113 PKLEYLTLLGNPVEHKKNYRLYVLYKLPSLRTLDFQK  149 (233)
T ss_pred             CccceeeecCCchhcccCceeEEEEecCcceEeehhh
Confidence            6777777766542221 01112345677777777654

>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=90.95  E-value=0.13  Score=44.71  Aligned_cols=85  Identities=19%  Similarity=0.116  Sum_probs=39.7

Q ss_pred             CccccEEeEecCCCccccCchhhhccCCCccEEEEecCCccccccccccccccccccCCCcceeccccccccccccCC--
Q 039808          216 FARLRILSVHACPKLKFVFSSFMIHFMSNLEDLTVEDCPAIEEIISEGEIIDSGCTALPRLKKLTLHYLPGLVTIWSS--  293 (358)
Q Consensus       216 ~~~L~~L~l~~c~~l~~l~~~~~l~~l~~L~~L~i~~c~~l~~i~~~~~~~~~~~~~l~~L~~L~l~~c~~L~~~~~~--  293 (358)
                      +|+|++|.++....-....-...+..+|+|++|.+++. +++.+...     .....+++|..|++.+|+..+.-...  
T Consensus        64 Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~N-ki~~lstl-----~pl~~l~nL~~Ldl~n~~~~~l~dyre~  137 (260)
T KOG2739|consen   64 LPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGN-KIKDLSTL-----RPLKELENLKSLDLFNCSVTNLDDYREK  137 (260)
T ss_pred             cchhhhhcccCCcccccccceehhhhCCceeEEeecCC-cccccccc-----chhhhhcchhhhhcccCCccccccHHHH
Confidence            45555555554321111111122344566666666653 22221100     13445566667777666544411111  


Q ss_pred             ---CCCCccEEeeeCC
Q 039808          294 ---AWPSLEYVSFYDC  306 (358)
Q Consensus       294 ---~~~~L~~L~i~~C  306 (358)
                         .+++|++|+-..+
T Consensus       138 vf~ll~~L~~LD~~dv  153 (260)
T KOG2739|consen  138 VFLLLPSLKYLDGCDV  153 (260)
T ss_pred             HHHHhhhhcccccccc
Confidence               4666766665554

>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]

Probab=88.02  E-value=0.11  Score=49.67  Aligned_cols=109  Identities=20%  Similarity=0.229  Sum_probs=57.3

Q ss_pred             hhcCccccEEEeeecCCCcceecccchhhhhhcCCCCCceEEEEccCchhHHHHHhhhccccccccceEEEEEeCccccc
Q 039808           22 ISRLHALKTLSIVVYPGDKRWYKDVKSVVLEVCNLTELSSLCFHFPEIKLLELFLQRCVAWNAQCLTEFRIVVGHDIKNI  101 (358)
Q Consensus        22 i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~~~~~~l~~l~~~~~~~~~~~~~~L~~l~i~~~~~~~~~  101 (358)
                      ++.+.+|++|++.+ +.+++.       ...+..+++|++|+++++.++.+... .     .+..|+.|.+. ++.    
T Consensus        91 l~~~~~l~~l~l~~-n~i~~i-------~~~l~~~~~L~~L~ls~N~I~~i~~l-~-----~l~~L~~L~l~-~N~----  151 (414)
T KOG0531|consen   91 LSKLKSLEALDLYD-NKIEKI-------ENLLSSLVNLQVLDLSFNKITKLEGL-S-----TLTLLKELNLS-GNL----  151 (414)
T ss_pred             cccccceeeeeccc-cchhhc-------ccchhhhhcchheeccccccccccch-h-----hccchhhheec-cCc----
Confidence            56778888888887 332211       11266788888888887777666432 1     34445555541 111    


Q ss_pred             cccCCcccccccccCCceEEeeCCCCChHHH--HhhccCccEEEeccCCCCCcc
Q 039808          102 VSRVPDAVAFDYNKQGKCLRFINGENIPDAV--LQILACCTAFYLDNHLHINSL  153 (358)
Q Consensus       102 ~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~--~~~l~~L~~L~l~~~~~~~~l  153 (358)
                      ++.+.   .+..+..+..+.+.++.......  ...+.+++.+.+.++ .+..+
T Consensus       152 i~~~~---~~~~l~~L~~l~l~~n~i~~ie~~~~~~~~~l~~l~l~~n-~i~~i  201 (414)
T KOG0531|consen  152 ISDIS---GLESLKSLKLLDLSYNRIVDIENDELSELISLEELDLGGN-SIREI  201 (414)
T ss_pred             chhcc---CCccchhhhcccCCcchhhhhhhhhhhhccchHHHhccCC-chhcc
Confidence            12222   22224455555555554222222  355667777777666 44333

>KOG2123 consensus Uncharacterized conserved protein [Function unknown]

Probab=87.32  E-value=0.052  Score=47.82  Aligned_cols=52  Identities=15%  Similarity=0.068  Sum_probs=29.7

Q ss_pred             ceEEeeCCCCChHHHHhhccCccEEEeccCCCCCccCcccccCccCCcEEEeecC
Q 039808          118 KCLRFINGENIPDAVLQILACCTAFYLDNHLHINSLSDFGVRSINGLKFCIISEC  172 (358)
Q Consensus       118 ~~L~l~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~l~~~~l~~l~~L~~L~l~~~  172 (358)
                      +.|++-++.-.-..+-..++.++.|.++-+ .++++.  ++..|.+|++|.+..|
T Consensus        22 kKLNcwg~~L~DIsic~kMp~lEVLsLSvN-kIssL~--pl~rCtrLkElYLRkN   73 (388)
T KOG2123|consen   22 KKLNCWGCGLDDISICEKMPLLEVLSLSVN-KISSLA--PLQRCTRLKELYLRKN   73 (388)
T ss_pred             hhhcccCCCccHHHHHHhcccceeEEeecc-ccccch--hHHHHHHHHHHHHHhc
Confidence            334443443222244455677777777666 566655  3667777777777654

>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]

Probab=86.13  E-value=0.16  Score=48.49  Aligned_cols=127  Identities=14%  Similarity=0.085  Sum_probs=70.4

Q ss_pred             cCccccEEEeeecCCCcceecccchhhhhhcCCCCCceEEEEccCchhHHHHHhhhccccccccceEEEEEeCccccccc
Q 039808           24 RLHALKTLSIVVYPGDKRWYKDVKSVVLEVCNLTELSSLCFHFPEIKLLELFLQRCVAWNAQCLTEFRIVVGHDIKNIVS  103 (358)
Q Consensus        24 ~L~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~~~~~~l~~l~~~~~~~~~~~~~~L~~l~i~~~~~~~~~~~  103 (358)
                      .+..++.+.+.. +.       .......+..+++|+.+.+..+.++.+...+.     .+.+|+.+.+   +.+     
T Consensus        70 ~l~~l~~l~l~~-n~-------i~~~~~~l~~~~~l~~l~l~~n~i~~i~~~l~-----~~~~L~~L~l---s~N-----  128 (414)
T KOG0531|consen   70 SLTSLKELNLRQ-NL-------IAKILNHLSKLKSLEALDLYDNKIEKIENLLS-----SLVNLQVLDL---SFN-----  128 (414)
T ss_pred             HhHhHHhhccch-hh-------hhhhhcccccccceeeeeccccchhhcccchh-----hhhcchheec---ccc-----
Confidence            466777776554 11       11123347888999999998888877754223     4566666665   222     


Q ss_pred             cCCcccccccccCCceEEeeCCCCChHHHHhhccCccEEEeccCCCCCccCc-ccccCccCCcEEEeecCC
Q 039808          104 RVPDAVAFDYNKQGKCLRFINGENIPDAVLQILACCTAFYLDNHLHINSLSD-FGVRSINGLKFCIISECP  173 (358)
Q Consensus       104 ~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~l~~-~~l~~l~~L~~L~l~~~~  173 (358)
                      .+.++..+..+..|+.|.+.++.-........++.++.+++.++ .+..+.. . +..+.+++.+++.++.
T Consensus       129 ~I~~i~~l~~l~~L~~L~l~~N~i~~~~~~~~l~~L~~l~l~~n-~i~~ie~~~-~~~~~~l~~l~l~~n~  197 (414)
T KOG0531|consen  129 KITKLEGLSTLTLLKELNLSGNLISDISGLESLKSLKLLDLSYN-RIVDIENDE-LSELISLEELDLGGNS  197 (414)
T ss_pred             ccccccchhhccchhhheeccCcchhccCCccchhhhcccCCcc-hhhhhhhhh-hhhccchHHHhccCCc
Confidence            11122233444446666665554221111223666777777666 5555542 1 3666777777776653

>KOG2123 consensus Uncharacterized conserved protein [Function unknown]

Probab=85.11  E-value=0.099  Score=46.11  Aligned_cols=77  Identities=22%  Similarity=0.239  Sum_probs=35.0

Q ss_pred             ccccEEeEecCCCccccCchhhhccCCCccEEEEecCCccccccccccccccccccCCCcceeccccccccccccCC---
Q 039808          217 ARLRILSVHACPKLKFVFSSFMIHFMSNLEDLTVEDCPAIEEIISEGEIIDSGCTALPRLKKLTLHYLPGLVTIWSS---  293 (358)
Q Consensus       217 ~~L~~L~l~~c~~l~~l~~~~~l~~l~~L~~L~i~~c~~l~~i~~~~~~~~~~~~~l~~L~~L~l~~c~~L~~~~~~---  293 (358)
                      .+.++|+.++| .+.++   .+...++.|+.|.++-. +++.+.        .+..+++|+.|++... .+.++.+-   
T Consensus        19 ~~vkKLNcwg~-~L~DI---sic~kMp~lEVLsLSvN-kIssL~--------pl~rCtrLkElYLRkN-~I~sldEL~YL   84 (388)
T KOG2123|consen   19 ENVKKLNCWGC-GLDDI---SICEKMPLLEVLSLSVN-KISSLA--------PLQRCTRLKELYLRKN-CIESLDELEYL   84 (388)
T ss_pred             HHhhhhcccCC-CccHH---HHHHhcccceeEEeecc-ccccch--------hHHHHHHHHHHHHHhc-ccccHHHHHHH
Confidence            34555555555 24444   34455566666655532 333222        2344455555555332 23333221   


Q ss_pred             -CCCCccEEeeeCCc
Q 039808          294 -AWPSLEYVSFYDCP  307 (358)
Q Consensus       294 -~~~~L~~L~i~~C~  307 (358)
                       ++|+|+.|.+...|
T Consensus        85 knlpsLr~LWL~ENP   99 (388)
T KOG2123|consen   85 KNLPSLRTLWLDENP   99 (388)
T ss_pred             hcCchhhhHhhccCC
Confidence             45555555555443

>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=82.75  E-value=0.58  Score=40.86  Aligned_cols=97  Identities=19%  Similarity=0.188  Sum_probs=58.2

Q ss_pred             CccccEEeEecCCCccccCchhhhccCCCccEEEEecC--CccccccccccccccccccCCCcceeccccccccccccCC
Q 039808          216 FARLRILSVHACPKLKFVFSSFMIHFMSNLEDLTVEDC--PAIEEIISEGEIIDSGCTALPRLKKLTLHYLPGLVTIWSS  293 (358)
Q Consensus       216 ~~~L~~L~l~~c~~l~~l~~~~~l~~l~~L~~L~i~~c--~~l~~i~~~~~~~~~~~~~l~~L~~L~l~~c~~L~~~~~~  293 (358)
                      |..|..+.+.++. ++.+   .-+..+|+|+.|.+++.  .-...+.       .-...+|+|+++++++. +++.+..-
T Consensus        42 ~~~le~ls~~n~g-ltt~---~~~P~Lp~LkkL~lsdn~~~~~~~l~-------vl~e~~P~l~~l~ls~N-ki~~lstl  109 (260)
T KOG2739|consen   42 FVELELLSVINVG-LTTL---TNFPKLPKLKKLELSDNYRRVSGGLE-------VLAEKAPNLKVLNLSGN-KIKDLSTL  109 (260)
T ss_pred             ccchhhhhhhccc-eeec---ccCCCcchhhhhcccCCcccccccce-------ehhhhCCceeEEeecCC-cccccccc
Confidence            4455555555543 2222   22357889999999876  2222221       23455699999999875 55543332


Q ss_pred             ----CCCCccEEeeeCCcCCCccCCC----CCCCCCeeEE
Q 039808          294 ----AWPSLEYVSFYDCPRLKNIGLG----SNLKHSVMEI  325 (358)
Q Consensus       294 ----~~~~L~~L~i~~C~~L~~lP~~----~~~~~~L~~~  325 (358)
                          .+.+|..|++.+|+-.+ +-.-    ..-+++|+.+
T Consensus       110 ~pl~~l~nL~~Ldl~n~~~~~-l~dyre~vf~ll~~L~~L  148 (260)
T KOG2739|consen  110 RPLKELENLKSLDLFNCSVTN-LDDYREKVFLLLPSLKYL  148 (260)
T ss_pred             chhhhhcchhhhhcccCCccc-cccHHHHHHHHhhhhccc
Confidence                78889999999998443 2111    1125677766

>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily

Probab=82.24  E-value=0.93  Score=24.35  Aligned_cols=16  Identities=19%  Similarity=0.553  Sum_probs=11.2

Q ss_pred             CCCccEEeeeCCcCCC
Q 039808          295 WPSLEYVSFYDCPRLK  310 (358)
Q Consensus       295 ~~~L~~L~i~~C~~L~  310 (358)
                      +++|++|++++|++++
T Consensus         1 c~~L~~L~l~~C~~it   16 (26)
T smart00367        1 CPNLRELDLSGCTNIT   16 (26)
T ss_pred             CCCCCEeCCCCCCCcC
Confidence            4677777777777654

>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A

Probab=80.40  E-value=7.3  Score=29.81  Aligned_cols=89  Identities=16%  Similarity=0.223  Sum_probs=30.3

Q ss_pred             CCccCcccccCccCCcEEEeecCCCceEecCCCCccccCCCccceeecccccccccccccccCCCcCccccEEeEecCCC
Q 039808          150 INSLSDFGVRSINGLKFCIISECPKIETVVDGKELTTVIFPSLENLSIHHLWNLTHICEGSVPNGSFARLRILSVHACPK  229 (358)
Q Consensus       150 ~~~l~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~  229 (358)
                      +..+...++.++.+|+.+.+..  .+..+.+..   ....++++++.+.+  .+..+..  ......++|+.+.+..  .
T Consensus        23 ~~~I~~~~F~~~~~l~~i~~~~--~~~~i~~~~---F~~~~~l~~i~~~~--~~~~i~~--~~F~~~~~l~~i~~~~--~   91 (129)
T PF13306_consen   23 IKKIGENAFSNCTSLKSINFPN--NLTSIGDNA---FSNCKSLESITFPN--NLKSIGD--NAFSNCTNLKNIDIPS--N   91 (129)
T ss_dssp             --EE-TTTTTT-TT-SEEEESS--TTSCE-TTT---TTT-TT-EEEEETS--TT-EE-T--TTTTT-TTECEEEETT--T
T ss_pred             eeEeChhhcccccccccccccc--cccccceee---eecccccccccccc--ccccccc--ccccccccccccccCc--c
Confidence            3444444455555566665544  233332221   22333455555533  2222211  1122345566666532  2


Q ss_pred             ccccCchhhhccCCCccEEEEe
Q 039808          230 LKFVFSSFMIHFMSNLEDLTVE  251 (358)
Q Consensus       230 l~~l~~~~~l~~l~~L~~L~i~  251 (358)
                      +..+.. ..+... +|+.+.+.
T Consensus        92 ~~~i~~-~~f~~~-~l~~i~~~  111 (129)
T PF13306_consen   92 ITEIGS-SSFSNC-NLKEINIP  111 (129)
T ss_dssp             -BEEHT-TTTTT--T--EEE-T
T ss_pred             ccEEch-hhhcCC-CceEEEEC
Confidence            333322 233444 66666554

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	358
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	4e-04
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	5e-04

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 41.4 bits (96), Expect = 4e-04
 Identities = 55/327 (16%), Positives = 115/327 (35%), Gaps = 69/327 (21%)

Query: 1   MDLSCNVEYVKMPPQLISS---GIISRLHALKTLSIVVYPGDKRWYKD-VKSVVLEV--C 54
            +LSC +        L+++    +   L A  T  I +         D VKS++L+   C
Sbjct: 262 FNLSCKI--------LLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDC 313

Query: 55  NLTEL-SSLCFHFP-EIKLLELFLQRCVA-WNAQCLTEFRIVVGHDIKNIVSRVPDAVAF 111
              +L   +    P  + ++   ++  +A W+      ++ V    +  I+    + +  
Sbjct: 314 RPQDLPREVLTTNPRRLSIIAESIRDGLATWD-----NWKHVNCDKLTTIIESSLNVLEP 368

Query: 112 DYNKQ--GKCLRFINGENIPDAVLQILACCTAFY----LDNHLHINSL----SDFGVRSI 161
              ++   +   F    +IP  +L ++           + N LH  SL          SI
Sbjct: 369 AEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISI 428

Query: 162 NGLKFCIISECPKI----ETVVD------GKELTTVIFPSLEN-----LSIHHLWNLTHI 206
             +   +  +         ++VD        +   +I P L+      +  HHL N+ H 
Sbjct: 429 PSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIG-HHLKNIEHP 487

Query: 207 CEGSVPNGSFARLRILSVHACPKLKFVFSSFMIH--FMSNLEDLT------VEDCPAIEE 258
              ++    F   R L      K++   +++      ++ L+ L        ++ P  E 
Sbjct: 488 ERMTLFRMVFLDFRFLEQ----KIRHDSTAWNASGSILNTLQQLKFYKPYICDNDPKYER 543

Query: 259 IIS---------EGEIIDSGCTALPRL 276
           +++         E  +I S  T L R+
Sbjct: 544 LVNAILDFLPKIEENLICSKYTDLLRI 570

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Length = 594

 Score = 41.0 bits (96), Expect = 5e-04
 Identities = 49/290 (16%), Positives = 96/290 (33%), Gaps = 43/290 (14%)

Query: 40  KRWYK----DVKSVVLEVCNLTELSSLCFHFPEIKLLELFLQRCVAWNAQCLTEFRIVVG 95
           K WY+      + V +  C     +++   FP+++ +EL  +   A        +   V 
Sbjct: 35  KSWYEIERWCRRKVFIGNCYAVSPATVIRRFPKVRSVELKGKPHFADFNLVPDGWGGYVY 94

Query: 96  HDIKNIVSRVPDAVAFDYNKQGKCLRFIN--GENIPDAVLQILA-CCTAFYLDNHLHINS 152
             I+ + S                L  I      + D  L+++A     F     L ++S
Sbjct: 95  PWIEAMSSSYT------------WLEEIRLKRMVVTDDCLELIAKSFKNF---KVLVLSS 139

Query: 153 ---LSDFGVRSI----NGLKFCIISECPKIETVVDGKELTTVIFPSLENLSI-HHLWNLT 204
               S  G+ +I      LK   + E    +            + SL +L+I      ++
Sbjct: 140 CEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLASEVS 199

Query: 205 HICEGSVPNGSFARLRILSVHACPKLKFVFSSFMIHFMSNLEDLTVEDCPAIEEIISEGE 264
                 +       L+ L ++    L+ + +  ++     LE+L      A        +
Sbjct: 200 FSALERLVTRC-PNLKSLKLNRAVPLEKLAT--LLQRAPQLEELGTGGYTA----EVRPD 252

Query: 265 IIDSGCTALPRLKKLTLHYLPGLVTIWSSAWPSLEYVSFYDCPRLKNIGL 314
           +      AL   K+L    L G      +  P++    +  C RL  + L
Sbjct: 253 VYSGLSVALSGCKELR--CLSGFWDAVPAYLPAV----YSVCSRLTTLNL 296

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	358
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	99.78
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	99.77
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	99.77
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	99.75
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	99.74
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	99.73
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	99.73
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	99.73
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	99.72
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	99.72
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	99.72
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	99.72
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	99.71
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	99.71
1o6v_A	466	Internalin A; bacterial infection, extracellular r	99.71
1o6v_A	466	Internalin A; bacterial infection, extracellular r	99.71
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	99.7
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	99.7
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	99.7
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	99.69
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	99.69
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	99.68
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	99.68
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	99.67
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	99.67
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	99.67
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	99.67
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	99.67
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	99.66
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	99.66
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	99.66
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	99.65
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	99.65
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	99.64
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	99.64
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	99.63
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	99.63
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	99.62
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	99.62
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	99.62
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	99.61
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	99.61
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	99.61
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	99.59
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	99.59
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	99.56
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	99.55
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	99.55
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	99.53
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	99.53
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	99.52
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	99.5
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	99.49
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	99.48
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	99.48
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	99.46
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	99.46
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	99.44
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	99.43
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	99.43
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	99.42
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	99.41
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	99.41
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	99.4
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	99.38
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	99.36
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	99.36
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	99.35
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	99.34
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	99.33
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	99.33
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	99.31
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	99.29
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	99.29
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	99.29
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	99.28
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	99.27
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	99.27
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	99.27
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	99.26
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	99.25
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	99.24
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	99.24
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	99.22
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	99.21
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	99.19
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	99.19
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	99.18
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	99.17
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	99.16
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	99.13
3m19_A	251	Variable lymphocyte receptor A diversity region; a	99.13
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	99.11
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	99.1
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	99.1
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	99.09
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	99.08
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	99.04
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	99.01
3m19_A	251	Variable lymphocyte receptor A diversity region; a	98.95
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	98.93
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	98.88
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	98.86
3e6j_A	229	Variable lymphocyte receptor diversity region; var	98.86
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	98.85
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	98.83
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	98.83
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	98.77
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	98.75
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	98.74
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	98.71
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	98.69
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	98.67
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	98.66
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	98.64
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	98.63
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	98.62
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	98.62
3e6j_A	229	Variable lymphocyte receptor diversity region; var	98.6
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	98.59
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	98.58
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	98.55
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	98.52
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	98.45
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	98.44
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	98.34
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	98.26
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	98.24
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	98.23
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	98.23
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	98.21
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	98.19
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	98.13
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	98.11
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	98.1
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	98.05
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	98.04
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	97.9
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	97.88
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	97.88
4fs7_A	394	Uncharacterized protein; leucine-rich repeats, pro	97.86
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	97.71
4fs7_A	394	Uncharacterized protein; leucine-rich repeats, pro	97.68
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	97.67
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	97.47
4gt6_A	394	Cell surface protein; leucine rich repeats, putati	97.44
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	97.31
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	97.29
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	97.26
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	97.21
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	97.21
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	97.12
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	95.85
4h09_A	379	Hypothetical leucine rich repeat protein; two LRR_	95.0
4gt6_A	394	Cell surface protein; leucine rich repeats, putati	94.86
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	93.34
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	91.71
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	91.65
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	89.88
4h09_A	379	Hypothetical leucine rich repeat protein; two LRR_	87.49
3rfe_A	130	Platelet glycoprotein IB beta chain; platelet surf	81.44

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=99.78  E-value=2.1e-18  Score=157.83  Aligned_cols=189  Identities=19%  Similarity=0.242  Sum_probs=147.9

Q ss_pred             hhccCccEEEeccCCCCCccCcccccCccCCcEEEeecCCCceEecCCCC-----ccccCCCccceeecccccccccccc
Q 039808          134 QILACCTAFYLDNHLHINSLSDFGVRSINGLKFCIISECPKIETVVDGKE-----LTTVIFPSLENLSIHHLWNLTHICE  208 (358)
Q Consensus       134 ~~l~~L~~L~l~~~~~~~~l~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~-----~~~~~l~~L~~L~l~~~~~l~~~~~  208 (358)
                      ..+++|+.|++.++ .+..++. .++++++|++|++++|.....++....     .....+++|++|+++++. ++.+  
T Consensus       124 ~~l~~L~~L~Ls~n-~l~~lp~-~l~~l~~L~~L~L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~-l~~l--  198 (328)
T 4fcg_A          124 QQFAGLETLTLARN-PLRALPA-SIASLNRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTG-IRSL--  198 (328)
T ss_dssp             GGGTTCSEEEEESC-CCCCCCG-GGGGCTTCCEEEEEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEEC-CCCC--
T ss_pred             hccCCCCEEECCCC-ccccCcH-HHhcCcCCCEEECCCCCCccccChhHhhccchhhhccCCCCCEEECcCCC-cCcc--
Confidence            34677777888777 5666665 488889999999998877776654311     012348899999998863 4444  


Q ss_pred             cccCCCcCccccEEeEecCCCccccCchhhhccCCCccEEEEecCCccccccccccccccccccCCCcceeccccccccc
Q 039808          209 GSVPNGSFARLRILSVHACPKLKFVFSSFMIHFMSNLEDLTVEDCPAIEEIISEGEIIDSGCTALPRLKKLTLHYLPGLV  288 (358)
Q Consensus       209 ~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~l~~l~~L~~L~i~~c~~l~~i~~~~~~~~~~~~~l~~L~~L~l~~c~~L~  288 (358)
                       +...+.+++|++|++++|. +..+++  .++.+++|+.|++++|.....++       ..++.+++|+.|++++|..++
T Consensus       199 -p~~l~~l~~L~~L~L~~N~-l~~l~~--~l~~l~~L~~L~Ls~n~~~~~~p-------~~~~~l~~L~~L~L~~n~~~~  267 (328)
T 4fcg_A          199 -PASIANLQNLKSLKIRNSP-LSALGP--AIHHLPKLEELDLRGCTALRNYP-------PIFGGRAPLKRLILKDCSNLL  267 (328)
T ss_dssp             -CGGGGGCTTCCEEEEESSC-CCCCCG--GGGGCTTCCEEECTTCTTCCBCC-------CCTTCCCCCCEEECTTCTTCC
T ss_pred             -hHhhcCCCCCCEEEccCCC-CCcCch--hhccCCCCCEEECcCCcchhhhH-------HHhcCCCCCCEEECCCCCchh
Confidence             3335678999999999975 555433  46889999999999998887776       467889999999999999999


Q ss_pred             cccCC--CCCCccEEeeeCCcCCCccCCCCCCCCCeeEEEecccccccceec
Q 039808          289 TIWSS--AWPSLEYVSFYDCPRLKNIGLGSNLKHSVMEIKAEKSWWDDLEWE  338 (358)
Q Consensus       289 ~~~~~--~~~~L~~L~i~~C~~L~~lP~~~~~~~~L~~~~~~~~~~~~l~~~  338 (358)
                      .++..  .+++|++|++++|+.++.+|..+..+++|+.+..+..+.+.+.+.
T Consensus       268 ~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~~L~~L~~l~l~~~~~~~l~~~  319 (328)
T 4fcg_A          268 TLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPHLQAQLDQH  319 (328)
T ss_dssp             BCCTTGGGCTTCCEEECTTCTTCCCCCGGGGGSCTTCEEECCGGGSCC----
T ss_pred             hcchhhhcCCCCCEEeCCCCCchhhccHHHhhccCceEEeCCHHHHHHHhhh
Confidence            88877  899999999999999999999999999999999988877777655

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=99.77  E-value=7.8e-18  Score=161.84  Aligned_cols=287  Identities=17%  Similarity=0.133  Sum_probs=186.9

Q ss_pred             cccceeccCCC---CccCCchhhcCccccEEEeeecCCCcceecccchhhhhhcCCCCCceEEEEccCchhHHHHHhhhc
Q 039808            4 SCNVEYVKMPP---QLISSGIISRLHALKTLSIVVYPGDKRWYKDVKSVVLEVCNLTELSSLCFHFPEIKLLELFLQRCV   80 (358)
Q Consensus         4 l~~L~~l~L~~---~~ip~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~~~~~~l~~l~~~~~~~~   80 (358)
                      -.++++|+|+.   +.+++..++++++|++|++++ +.+..      ..+..+.++++|++|++..+.+..++..    .
T Consensus        31 ~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~-n~i~~------~~~~~~~~l~~L~~L~L~~n~l~~~~~~----~   99 (477)
T 2id5_A           31 PTETRLLDLGKNRIKTLNQDEFASFPHLEELELNE-NIVSA------VEPGAFNNLFNLRTLGLRSNRLKLIPLG----V   99 (477)
T ss_dssp             CTTCSEEECCSSCCCEECTTTTTTCTTCCEEECTT-SCCCE------ECTTTTTTCTTCCEEECCSSCCCSCCTT----S
T ss_pred             CCCCcEEECCCCccceECHhHccCCCCCCEEECCC-CccCE------eChhhhhCCccCCEEECCCCcCCccCcc----c
Confidence            35678888887   345666678899999999987 33321      1245688889999999877777666531    0


Q ss_pred             cccccccceEEEEEeCccccccccCCcccccccccCCceEEeeCCC--CChHHHHhhccCccEEEeccCCCCCccCcccc
Q 039808           81 AWNAQCLTEFRIVVGHDIKNIVSRVPDAVAFDYNKQGKCLRFINGE--NIPDAVLQILACCTAFYLDNHLHINSLSDFGV  158 (358)
Q Consensus        81 ~~~~~~L~~l~i~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~--~~~~~~~~~l~~L~~L~l~~~~~~~~l~~~~l  158 (358)
                      ...+++|+.+.+   ..+ . +...+. ..+..+.+|+.|.+.++.  .+....+..+++|+.|++.++ .+..++...+
T Consensus       100 ~~~l~~L~~L~L---s~n-~-i~~~~~-~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~l  172 (477)
T 2id5_A          100 FTGLSNLTKLDI---SEN-K-IVILLD-YMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKC-NLTSIPTEAL  172 (477)
T ss_dssp             STTCTTCCEEEC---TTS-C-CCEECT-TTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESC-CCSSCCHHHH
T ss_pred             ccCCCCCCEEEC---CCC-c-cccCCh-hHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCC-cCcccChhHh
Confidence            114566776665   111 0 111111 245566688888887764  333334456788888888888 6666665557


Q ss_pred             cCccCCcEEEeecCCCceEecCCCCccccCCCccceeecccccccccccccccCCCcCccccEEeEecCCCccccCchhh
Q 039808          159 RSINGLKFCIISECPKIETVVDGKELTTVIFPSLENLSIHHLWNLTHICEGSVPNGSFARLRILSVHACPKLKFVFSSFM  238 (358)
Q Consensus       159 ~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~  238 (358)
                      .++++|+.|++++|.. ..+....   ...+++|++|.++++..+..++..   .....+|++|++.+| +++.+ +...
T Consensus       173 ~~l~~L~~L~l~~n~i-~~~~~~~---~~~l~~L~~L~l~~~~~~~~~~~~---~~~~~~L~~L~l~~n-~l~~~-~~~~  243 (477)
T 2id5_A          173 SHLHGLIVLRLRHLNI-NAIRDYS---FKRLYRLKVLEISHWPYLDTMTPN---CLYGLNLTSLSITHC-NLTAV-PYLA  243 (477)
T ss_dssp             TTCTTCCEEEEESCCC-CEECTTC---SCSCTTCCEEEEECCTTCCEECTT---TTTTCCCSEEEEESS-CCCSC-CHHH
T ss_pred             cccCCCcEEeCCCCcC-cEeChhh---cccCcccceeeCCCCccccccCcc---cccCccccEEECcCC-ccccc-CHHH
Confidence            8888888888888743 3343322   556788888888887776665322   223458888888887 45554 3345


Q ss_pred             hccCCCccEEEEecCCccccccccccccccccccCCCcceeccccccccccccCC---CCCCccEEeeeCCcCCCccCCC
Q 039808          239 IHFMSNLEDLTVEDCPAIEEIISEGEIIDSGCTALPRLKKLTLHYLPGLVTIWSS---AWPSLEYVSFYDCPRLKNIGLG  315 (358)
Q Consensus       239 l~~l~~L~~L~i~~c~~l~~i~~~~~~~~~~~~~l~~L~~L~l~~c~~L~~~~~~---~~~~L~~L~i~~C~~L~~lP~~  315 (358)
                      +..+++|+.|+++++. +..++.      ..+..+++|+.|+++++ .++.+...   .+++|+.|++++| +++.+|..
T Consensus       244 ~~~l~~L~~L~Ls~n~-l~~~~~------~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~  314 (477)
T 2id5_A          244 VRHLVYLRFLNLSYNP-ISTIEG------SMLHELLRLQEIQLVGG-QLAVVEPYAFRGLNYLRVLNVSGN-QLTTLEES  314 (477)
T ss_dssp             HTTCTTCCEEECCSSC-CCEECT------TSCTTCTTCCEEECCSS-CCSEECTTTBTTCTTCCEEECCSS-CCSCCCGG
T ss_pred             hcCccccCeeECCCCc-CCccCh------hhccccccCCEEECCCC-ccceECHHHhcCcccCCEEECCCC-cCceeCHh
Confidence            6788888888888764 444331      24567788888888766 56666444   6788888888887 57777654


Q ss_pred             C-CCCCCeeEEE
Q 039808          316 S-NLKHSVMEIK  326 (358)
Q Consensus       316 ~-~~~~~L~~~~  326 (358)
                      . ..+++|+.+.
T Consensus       315 ~~~~l~~L~~L~  326 (477)
T 2id5_A          315 VFHSVGNLETLI  326 (477)
T ss_dssp             GBSCGGGCCEEE
T ss_pred             HcCCCcccCEEE
Confidence            3 4566677664

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=99.77  E-value=9.8e-18  Score=154.37  Aligned_cols=272  Identities=15%  Similarity=0.134  Sum_probs=125.7

Q ss_pred             cccceeccCCC---CccCCchhhcCccccEEEeeecCCCcceecccchhhhhhcCCCCCceEEEEccCchhHHHHHhhhc
Q 039808            4 SCNVEYVKMPP---QLISSGIISRLHALKTLSIVVYPGDKRWYKDVKSVVLEVCNLTELSSLCFHFPEIKLLELFLQRCV   80 (358)
Q Consensus         4 l~~L~~l~L~~---~~ip~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~~~~~~l~~l~~~~~~~~   80 (358)
                      +.+|+.+++++   ..+|.  ++.+++|++|++++ +.+..       .+. +.++++|++|++..+.+..++. +.   
T Consensus        43 l~~L~~L~l~~~~i~~~~~--~~~~~~L~~L~l~~-n~i~~-------~~~-~~~l~~L~~L~L~~n~i~~~~~-~~---  107 (347)
T 4fmz_A           43 LESITKLVVAGEKVASIQG--IEYLTNLEYLNLNG-NQITD-------ISP-LSNLVKLTNLYIGTNKITDISA-LQ---  107 (347)
T ss_dssp             HTTCSEEECCSSCCCCCTT--GGGCTTCCEEECCS-SCCCC-------CGG-GTTCTTCCEEECCSSCCCCCGG-GT---
T ss_pred             cccccEEEEeCCccccchh--hhhcCCccEEEccC-Ccccc-------chh-hhcCCcCCEEEccCCcccCchH-Hc---
Confidence            45667777766   23443  56777777777776 23321       111 5666666666665555554431 12   


Q ss_pred             cccccccceEEEEEeCccccccccCCcccccccccCCceEEeeCCCCChH-HHHhhccCccEEEeccCCCCCccCccccc
Q 039808           81 AWNAQCLTEFRIVVGHDIKNIVSRVPDAVAFDYNKQGKCLRFINGENIPD-AVLQILACCTAFYLDNHLHINSLSDFGVR  159 (358)
Q Consensus        81 ~~~~~~L~~l~i~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~-~~~~~l~~L~~L~l~~~~~~~~l~~~~l~  159 (358)
                        .+++|+.+.+.   .+  .+...+   .+..+++|+.|.+.++..... .....+++|+.|++.++ .+..+..  +.
T Consensus       108 --~l~~L~~L~l~---~n--~i~~~~---~~~~l~~L~~L~l~~n~~~~~~~~~~~l~~L~~L~l~~~-~~~~~~~--~~  174 (347)
T 4fmz_A          108 --NLTNLRELYLN---ED--NISDIS---PLANLTKMYSLNLGANHNLSDLSPLSNMTGLNYLTVTES-KVKDVTP--IA  174 (347)
T ss_dssp             --TCTTCSEEECT---TS--CCCCCG---GGTTCTTCCEEECTTCTTCCCCGGGTTCTTCCEEECCSS-CCCCCGG--GG
T ss_pred             --CCCcCCEEECc---CC--cccCch---hhccCCceeEEECCCCCCcccccchhhCCCCcEEEecCC-CcCCchh--hc
Confidence              34555555541   11  011111   234444555665555421111 11334555555555555 3333332  45


Q ss_pred             CccCCcEEEeecCCCceEecCCC-----------------CccccCCCccceeecccccccccccccccCCCcCccccEE
Q 039808          160 SINGLKFCIISECPKIETVVDGK-----------------ELTTVIFPSLENLSIHHLWNLTHICEGSVPNGSFARLRIL  222 (358)
Q Consensus       160 ~l~~L~~L~l~~~~~~~~~~~~~-----------------~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L  222 (358)
                      .+++|++|++++|. +..+..-.                 ......+++|++|+++++.- ..+.    ..+.+++|++|
T Consensus       175 ~l~~L~~L~l~~n~-l~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~L~~L~l~~n~l-~~~~----~~~~l~~L~~L  248 (347)
T 4fmz_A          175 NLTDLYSLSLNYNQ-IEDISPLASLTSLHYFTAYVNQITDITPVANMTRLNSLKIGNNKI-TDLS----PLANLSQLTWL  248 (347)
T ss_dssp             GCTTCSEEECTTSC-CCCCGGGGGCTTCCEEECCSSCCCCCGGGGGCTTCCEEECCSSCC-CCCG----GGTTCTTCCEE
T ss_pred             cCCCCCEEEccCCc-ccccccccCCCccceeecccCCCCCCchhhcCCcCCEEEccCCcc-CCCc----chhcCCCCCEE
Confidence            55555555555542 22111000                 00023344555555554422 1110    02344555555


Q ss_pred             eEecCCCccccCchhhhccCCCccEEEEecCCccccccccccccccccccCCCcceeccccccccccccCC---CCCCcc
Q 039808          223 SVHACPKLKFVFSSFMIHFMSNLEDLTVEDCPAIEEIISEGEIIDSGCTALPRLKKLTLHYLPGLVTIWSS---AWPSLE  299 (358)
Q Consensus       223 ~l~~c~~l~~l~~~~~l~~l~~L~~L~i~~c~~l~~i~~~~~~~~~~~~~l~~L~~L~l~~c~~L~~~~~~---~~~~L~  299 (358)
                      ++++| .++.+   +.+..+++|+.|++++| .+..++        ....+++|+.|++++| .++.....   .+++|+
T Consensus       249 ~l~~n-~l~~~---~~~~~l~~L~~L~l~~n-~l~~~~--------~~~~l~~L~~L~L~~n-~l~~~~~~~l~~l~~L~  314 (347)
T 4fmz_A          249 EIGTN-QISDI---NAVKDLTKLKMLNVGSN-QISDIS--------VLNNLSQLNSLFLNNN-QLGNEDMEVIGGLTNLT  314 (347)
T ss_dssp             ECCSS-CCCCC---GGGTTCTTCCEEECCSS-CCCCCG--------GGGGCTTCSEEECCSS-CCCGGGHHHHHTCTTCS
T ss_pred             ECCCC-ccCCC---hhHhcCCCcCEEEccCC-ccCCCh--------hhcCCCCCCEEECcCC-cCCCcChhHhhccccCC
Confidence            55554 23332   22345555555555554 333322        2445566666666555 33333322   566666


Q ss_pred             EEeeeCCcCCCccCCCCCCCCCeeEE
Q 039808          300 YVSFYDCPRLKNIGLGSNLKHSVMEI  325 (358)
Q Consensus       300 ~L~i~~C~~L~~lP~~~~~~~~L~~~  325 (358)
                      +|++++|+ ++.+|. ...+++|+.+
T Consensus       315 ~L~L~~n~-l~~~~~-~~~l~~L~~L  338 (347)
T 4fmz_A          315 TLFLSQNH-ITDIRP-LASLSKMDSA  338 (347)
T ss_dssp             EEECCSSS-CCCCGG-GGGCTTCSEE
T ss_pred             EEEccCCc-cccccC-hhhhhcccee
Confidence            66666664 444433 3344555544

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=99.75  E-value=2.6e-17  Score=158.23  Aligned_cols=268  Identities=20%  Similarity=0.223  Sum_probs=196.2

Q ss_pred             CcccceeccCCC---CccCCchhhcCccccEEEeeecCCCcceecccchhh-hhhcCCCCCceEEEEccCchhHH-HHHh
Q 039808            3 LSCNVEYVKMPP---QLISSGIISRLHALKTLSIVVYPGDKRWYKDVKSVV-LEVCNLTELSSLCFHFPEIKLLE-LFLQ   77 (358)
Q Consensus         3 ~l~~L~~l~L~~---~~ip~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~-~~l~~l~~L~~L~~~~~~l~~l~-~~~~   77 (358)
                      -+.+|++|+|+.   ..++++.++++++|++|++++ +.+.       .++ ..+.++++|++|++..+.+..++ ..+.
T Consensus        54 ~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~-n~l~-------~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~  125 (477)
T 2id5_A           54 SFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRS-NRLK-------LIPLGVFTGLSNLTKLDISENKIVILLDYMFQ  125 (477)
T ss_dssp             TCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCS-SCCC-------SCCTTSSTTCTTCCEEECTTSCCCEECTTTTT
T ss_pred             CCCCCCEEECCCCccCEeChhhhhCCccCCEEECCC-CcCC-------ccCcccccCCCCCCEEECCCCccccCChhHcc
Confidence            467899999997   345566678999999999998 4343       222 34788999999999777765542 1122


Q ss_pred             hhccccccccceEEEEEeCccccccccCCcccccccccCCceEEeeCCC--CChHHHHhhccCccEEEeccCCCCCccCc
Q 039808           78 RCVAWNAQCLTEFRIVVGHDIKNIVSRVPDAVAFDYNKQGKCLRFINGE--NIPDAVLQILACCTAFYLDNHLHINSLSD  155 (358)
Q Consensus        78 ~~~~~~~~~L~~l~i~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~--~~~~~~~~~l~~L~~L~l~~~~~~~~l~~  155 (358)
                           .+++|+.+.+....     +...+ ...+..+.+|+.|.+.++.  .++......+++|+.|++.++ .+..+..
T Consensus       126 -----~l~~L~~L~l~~n~-----l~~~~-~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n-~i~~~~~  193 (477)
T 2id5_A          126 -----DLYNLKSLEVGDND-----LVYIS-HRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHL-NINAIRD  193 (477)
T ss_dssp             -----TCTTCCEEEECCTT-----CCEEC-TTSSTTCTTCCEEEEESCCCSSCCHHHHTTCTTCCEEEEESC-CCCEECT
T ss_pred             -----ccccCCEEECCCCc-----cceeC-hhhccCCCCCCEEECCCCcCcccChhHhcccCCCcEEeCCCC-cCcEeCh
Confidence                 56778888762111     11111 1256667799999998874  566666778999999999998 7777776


Q ss_pred             ccccCccCCcEEEeecCCCceEecCCCCccccCCCccceeecccccccccccccccCCCcCccccEEeEecCCCccccCc
Q 039808          156 FGVRSINGLKFCIISECPKIETVVDGKELTTVIFPSLENLSIHHLWNLTHICEGSVPNGSFARLRILSVHACPKLKFVFS  235 (358)
Q Consensus       156 ~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~  235 (358)
                      ..+..+++|++|++++|..+..++..    .....+|++|+++++. ++.++.  ...+.+++|++|+++++. ++.+.+
T Consensus       194 ~~~~~l~~L~~L~l~~~~~~~~~~~~----~~~~~~L~~L~l~~n~-l~~~~~--~~~~~l~~L~~L~Ls~n~-l~~~~~  265 (477)
T 2id5_A          194 YSFKRLYRLKVLEISHWPYLDTMTPN----CLYGLNLTSLSITHCN-LTAVPY--LAVRHLVYLRFLNLSYNP-ISTIEG  265 (477)
T ss_dssp             TCSCSCTTCCEEEEECCTTCCEECTT----TTTTCCCSEEEEESSC-CCSCCH--HHHTTCTTCCEEECCSSC-CCEECT
T ss_pred             hhcccCcccceeeCCCCccccccCcc----cccCccccEEECcCCc-ccccCH--HHhcCccccCeeECCCCc-CCccCh
Confidence            67899999999999999888877554    3344599999998874 444321  123568999999999875 555533


Q ss_pred             hhhhccCCCccEEEEecCCccccccccccccccccccCCCcceeccccccccccccCC---CCCCccEEeeeCCc
Q 039808          236 SFMIHFMSNLEDLTVEDCPAIEEIISEGEIIDSGCTALPRLKKLTLHYLPGLVTIWSS---AWPSLEYVSFYDCP  307 (358)
Q Consensus       236 ~~~l~~l~~L~~L~i~~c~~l~~i~~~~~~~~~~~~~l~~L~~L~l~~c~~L~~~~~~---~~~~L~~L~i~~C~  307 (358)
                       ..+..+++|+.|+++++. +..+.      ...+..+++|+.|+++++ .++.++..   .+++|+.|++++++
T Consensus       266 -~~~~~l~~L~~L~L~~n~-l~~~~------~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~l~~N~  331 (477)
T 2id5_A          266 -SMLHELLRLQEIQLVGGQ-LAVVE------PYAFRGLNYLRVLNVSGN-QLTTLEESVFHSVGNLETLILDSNP  331 (477)
T ss_dssp             -TSCTTCTTCCEEECCSSC-CSEEC------TTTBTTCTTCCEEECCSS-CCSCCCGGGBSCGGGCCEEECCSSC
T ss_pred             -hhccccccCCEEECCCCc-cceEC------HHHhcCcccCCEEECCCC-cCceeCHhHcCCCcccCEEEccCCC
Confidence             356789999999999874 44332      135778899999999877 78877765   68999999999875

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=99.74  E-value=1.3e-17  Score=156.11  Aligned_cols=282  Identities=15%  Similarity=0.137  Sum_probs=180.5

Q ss_pred             cccceeccCCC---CccCCchhhcCccccEEEeeecCCCcceecccchhhhhhcCCCCCceEEEEccCchhHHH-HHhhh
Q 039808            4 SCNVEYVKMPP---QLISSGIISRLHALKTLSIVVYPGDKRWYKDVKSVVLEVCNLTELSSLCFHFPEIKLLEL-FLQRC   79 (358)
Q Consensus         4 l~~L~~l~L~~---~~ip~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~~~~~~l~~l~~-~~~~~   79 (358)
                      +.++++++++.   +.+|+.+++++++|++|++++ +.+...      .+..+.++++|++|++..+.+..++. .++  
T Consensus        44 l~~l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~-n~i~~~------~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~--  114 (390)
T 3o6n_A           44 LNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLND-LQIEEI------DTYAFAYAHTIQKLYMGFNAIRYLPPHVFQ--  114 (390)
T ss_dssp             GCCCSEEEEESCEESEECTHHHHHCCCCSEEECTT-SCCCEE------CTTTTTTCTTCCEEECCSSCCCCCCTTTTT--
T ss_pred             cCCceEEEecCCchhhCChhHhcccccCcEEECCC-Cccccc------ChhhccCCCCcCEEECCCCCCCcCCHHHhc--
Confidence            46778888876   568888888899999999987 333211      12367888888888887777665532 112  


Q ss_pred             ccccccccceEEEEEeCccccccccCCcccccccccCCceEEeeCCC--CChHHHHhhccCccEEEeccCCCCCccCccc
Q 039808           80 VAWNAQCLTEFRIVVGHDIKNIVSRVPDAVAFDYNKQGKCLRFINGE--NIPDAVLQILACCTAFYLDNHLHINSLSDFG  157 (358)
Q Consensus        80 ~~~~~~~L~~l~i~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~--~~~~~~~~~l~~L~~L~l~~~~~~~~l~~~~  157 (358)
                         .+++|+.+.+.   .+  .+..+|. ..+..+++|+.|.+.++.  .++......+++|+.|++.++ .+..++   
T Consensus       115 ---~l~~L~~L~L~---~n--~l~~l~~-~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~---  181 (390)
T 3o6n_A          115 ---NVPLLTVLVLE---RN--DLSSLPR-GIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSN-RLTHVD---  181 (390)
T ss_dssp             ---TCTTCCEEECC---SS--CCCCCCT-TTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSS-CCSBCC---
T ss_pred             ---CCCCCCEEECC---CC--ccCcCCH-HHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCC-cCCccc---
Confidence               45667766652   11  1233332 224556678888887763  444444556778888888777 554443   


Q ss_pred             ccCccCCcEEEeecCCCceEecCCC-------------CccccCCCccceeecccccccccccccccCCCcCccccEEeE
Q 039808          158 VRSINGLKFCIISECPKIETVVDGK-------------ELTTVIFPSLENLSIHHLWNLTHICEGSVPNGSFARLRILSV  224 (358)
Q Consensus       158 l~~l~~L~~L~l~~~~~~~~~~~~~-------------~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l  224 (358)
                      ++.+++|+.|+++++.. ..+....             ......+++|++|++.++.- ...    ...+.+++|++|++
T Consensus       182 ~~~l~~L~~L~l~~n~l-~~~~~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~l-~~~----~~l~~l~~L~~L~L  255 (390)
T 3o6n_A          182 LSLIPSLFHANVSYNLL-STLAIPIAVEELDASHNSINVVRGPVNVELTILKLQHNNL-TDT----AWLLNYPGLVEVDL  255 (390)
T ss_dssp             GGGCTTCSEEECCSSCC-SEEECCSSCSEEECCSSCCCEEECCCCSSCCEEECCSSCC-CCC----GGGGGCTTCSEEEC
T ss_pred             cccccccceeecccccc-cccCCCCcceEEECCCCeeeeccccccccccEEECCCCCC-ccc----HHHcCCCCccEEEC
Confidence            45566666666655422 2111000             00012346777777777542 221    23456788999999


Q ss_pred             ecCCCccccCchhhhccCCCccEEEEecCCccccccccccccccccccCCCcceeccccccccccccCC--CCCCccEEe
Q 039808          225 HACPKLKFVFSSFMIHFMSNLEDLTVEDCPAIEEIISEGEIIDSGCTALPRLKKLTLHYLPGLVTIWSS--AWPSLEYVS  302 (358)
Q Consensus       225 ~~c~~l~~l~~~~~l~~l~~L~~L~i~~c~~l~~i~~~~~~~~~~~~~l~~L~~L~l~~c~~L~~~~~~--~~~~L~~L~  302 (358)
                      +++. ++...+ ..+..+++|+.|+++++ .+..++       .....+|+|+.|+++++ .++.++..  .+++|++|+
T Consensus       256 s~n~-l~~~~~-~~~~~l~~L~~L~L~~n-~l~~~~-------~~~~~l~~L~~L~L~~n-~l~~~~~~~~~l~~L~~L~  324 (390)
T 3o6n_A          256 SYNE-LEKIMY-HPFVKMQRLERLYISNN-RLVALN-------LYGQPIPTLKVLDLSHN-HLLHVERNQPQFDRLENLY  324 (390)
T ss_dssp             CSSC-CCEEES-GGGTTCSSCCEEECCSS-CCCEEE-------CSSSCCTTCCEEECCSS-CCCCCGGGHHHHTTCSEEE
T ss_pred             CCCc-CCCcCh-hHccccccCCEEECCCC-cCcccC-------cccCCCCCCCEEECCCC-cceecCccccccCcCCEEE
Confidence            8874 554433 34577889999999886 455554       34567899999999887 67777766  789999999


Q ss_pred             eeCCcCCCccCCCCCCCCCeeEEEe
Q 039808          303 FYDCPRLKNIGLGSNLKHSVMEIKA  327 (358)
Q Consensus       303 i~~C~~L~~lP~~~~~~~~L~~~~~  327 (358)
                      +++|+ ++.+|  ...+++|+.+..
T Consensus       325 L~~N~-i~~~~--~~~~~~L~~L~l  346 (390)
T 3o6n_A          325 LDHNS-IVTLK--LSTHHTLKNLTL  346 (390)
T ss_dssp             CCSSC-CCCCC--CCTTCCCSEEEC
T ss_pred             CCCCc-cceeC--chhhccCCEEEc
Confidence            99985 77776  445678887754

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=99.73  E-value=1.2e-17  Score=159.36  Aligned_cols=124  Identities=15%  Similarity=0.145  Sum_probs=86.3

Q ss_pred             CccceeecccccccccccccccCCCcCccccEEeEecCCCccccCchhhhccCCCccEEEEecCCccccccccccccccc
Q 039808          190 PSLENLSIHHLWNLTHICEGSVPNGSFARLRILSVHACPKLKFVFSSFMIHFMSNLEDLTVEDCPAIEEIISEGEIIDSG  269 (358)
Q Consensus       190 ~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~l~~l~~L~~L~i~~c~~l~~i~~~~~~~~~~  269 (358)
                      ++|++|+++++.-....   +...+.+++|++|++++|. +..+.+ ..++.+++|+.|+++++. +..++      ...
T Consensus       275 ~~L~~L~l~~n~l~~~~---~~~~~~l~~L~~L~Ls~n~-l~~~~~-~~~~~l~~L~~L~Ls~N~-l~~~~------~~~  342 (455)
T 3v47_A          275 SGVKTCDLSKSKIFALL---KSVFSHFTDLEQLTLAQNE-INKIDD-NAFWGLTHLLKLNLSQNF-LGSID------SRM  342 (455)
T ss_dssp             SCCCEEECCSSCCCEEC---TTTTTTCTTCCEEECTTSC-CCEECT-TTTTTCTTCCEEECCSSC-CCEEC------GGG
T ss_pred             cCceEEEecCccccccc---hhhcccCCCCCEEECCCCc-ccccCh-hHhcCcccCCEEECCCCc-cCCcC------hhH
Confidence            46677777665433221   2234567888888888874 555433 345778899999998873 44432      134


Q ss_pred             cccCCCcceeccccccccccccCC---CCCCccEEeeeCCcCCCccCCCC-CCCCCeeEEEe
Q 039808          270 CTALPRLKKLTLHYLPGLVTIWSS---AWPSLEYVSFYDCPRLKNIGLGS-NLKHSVMEIKA  327 (358)
Q Consensus       270 ~~~l~~L~~L~l~~c~~L~~~~~~---~~~~L~~L~i~~C~~L~~lP~~~-~~~~~L~~~~~  327 (358)
                      +..+++|+.|+++++ .++.+...   .+++|++|++++| +++.+|... ..+++|+.+.-
T Consensus       343 ~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~l  402 (455)
T 3v47_A          343 FENLDKLEVLDLSYN-HIRALGDQSFLGLPNLKELALDTN-QLKSVPDGIFDRLTSLQKIWL  402 (455)
T ss_dssp             GTTCTTCCEEECCSS-CCCEECTTTTTTCTTCCEEECCSS-CCSCCCTTTTTTCTTCCEEEC
T ss_pred             hcCcccCCEEECCCC-cccccChhhccccccccEEECCCC-ccccCCHhHhccCCcccEEEc
Confidence            678899999999887 56666443   7899999999997 588888754 67888988854

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=99.73  E-value=1.1e-16  Score=152.60  Aligned_cols=135  Identities=21%  Similarity=0.142  Sum_probs=95.8

Q ss_pred             cCCcEEEeecCCCceEecCCCCccccCCCccceeecccccccccccccccCCCcCccccEEeEecCCCccccCchhhhcc
Q 039808          162 NGLKFCIISECPKIETVVDGKELTTVIFPSLENLSIHHLWNLTHICEGSVPNGSFARLRILSVHACPKLKFVFSSFMIHF  241 (358)
Q Consensus       162 ~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~l~~  241 (358)
                      ++|++|++++|......+..    ...+++|++|+++++.-....   +..++.+++|++|++++| .++.+.+ ..++.
T Consensus       275 ~~L~~L~l~~n~l~~~~~~~----~~~l~~L~~L~Ls~n~l~~~~---~~~~~~l~~L~~L~Ls~N-~l~~~~~-~~~~~  345 (455)
T 3v47_A          275 SGVKTCDLSKSKIFALLKSV----FSHFTDLEQLTLAQNEINKID---DNAFWGLTHLLKLNLSQN-FLGSIDS-RMFEN  345 (455)
T ss_dssp             SCCCEEECCSSCCCEECTTT----TTTCTTCCEEECTTSCCCEEC---TTTTTTCTTCCEEECCSS-CCCEECG-GGGTT
T ss_pred             cCceEEEecCccccccchhh----cccCCCCCEEECCCCcccccC---hhHhcCcccCCEEECCCC-ccCCcCh-hHhcC
Confidence            45666666665433322222    556889999999887543221   223567899999999998 4566544 45688


Q ss_pred             CCCccEEEEecCCccccccccccccccccccCCCcceeccccccccccccCC---CCCCccEEeeeCCcCCCccC
Q 039808          242 MSNLEDLTVEDCPAIEEIISEGEIIDSGCTALPRLKKLTLHYLPGLVTIWSS---AWPSLEYVSFYDCPRLKNIG  313 (358)
Q Consensus       242 l~~L~~L~i~~c~~l~~i~~~~~~~~~~~~~l~~L~~L~l~~c~~L~~~~~~---~~~~L~~L~i~~C~~L~~lP  313 (358)
                      +++|+.|+++++. +..+.      ...+..+++|+.|+++++ .++.++..   .+++|++|++++++---..|
T Consensus       346 l~~L~~L~Ls~N~-l~~~~------~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~  412 (455)
T 3v47_A          346 LDKLEVLDLSYNH-IRALG------DQSFLGLPNLKELALDTN-QLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP  412 (455)
T ss_dssp             CTTCCEEECCSSC-CCEEC------TTTTTTCTTCCEEECCSS-CCSCCCTTTTTTCTTCCEEECCSSCBCCCTT
T ss_pred             cccCCEEECCCCc-ccccC------hhhccccccccEEECCCC-ccccCCHhHhccCCcccEEEccCCCcccCCC
Confidence            9999999999984 44432      135778999999999886 78888875   78999999999986433333

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=99.73  E-value=1.3e-16  Score=157.68  Aligned_cols=33  Identities=18%  Similarity=0.287  Sum_probs=20.4

Q ss_pred             CcccceeccCCC---CccCCchhhcCccccEEEeee
Q 039808            3 LSCNVEYVKMPP---QLISSGIISRLHALKTLSIVV   35 (358)
Q Consensus         3 ~l~~L~~l~L~~---~~ip~~~i~~L~~L~~L~l~~   35 (358)
                      -+.+|++|+|+.   ..++++.++++.+|++|++++
T Consensus        55 ~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~   90 (606)
T 3t6q_A           55 RLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTA   90 (606)
T ss_dssp             TCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTT
T ss_pred             cCccceEEECCCCccceeChhhccCccccCeeeCCC
Confidence            356677777765   234444456777777777766

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=99.72  E-value=1.7e-16  Score=161.94  Aligned_cols=302  Identities=10%  Similarity=0.052  Sum_probs=173.6

Q ss_pred             CcccceeccCCC---Cc------------------cCCch-hhcCccccEEEeeecCCCcceecccchhhhhhcCCCCCc
Q 039808            3 LSCNVEYVKMPP---QL------------------ISSGI-ISRLHALKTLSIVVYPGDKRWYKDVKSVVLEVCNLTELS   60 (358)
Q Consensus         3 ~l~~L~~l~L~~---~~------------------ip~~~-i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~l~~L~   60 (358)
                      -+++|++|+|+.   ..                  +|+.+ +.++++|++|++++ +.+.      ..++..+.++++|+
T Consensus       446 ~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~-N~l~------~~iP~~l~~L~~L~  518 (876)
T 4ecn_A          446 RLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYN-CPNM------TQLPDFLYDLPELQ  518 (876)
T ss_dssp             GCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEES-CTTC------CSCCGGGGGCSSCC
T ss_pred             cCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcC-CCCC------ccChHHHhCCCCCC
Confidence            367899999987   33                  77775 33999999999998 2221      34567899999999


Q ss_pred             eEEEEccC-ch--hHHHHHhhhc--cccccccceEEEEEeCccccccccCCcccccccccCCceEEeeCCC--CChHHHH
Q 039808           61 SLCFHFPE-IK--LLELFLQRCV--AWNAQCLTEFRIVVGHDIKNIVSRVPDAVAFDYNKQGKCLRFINGE--NIPDAVL  133 (358)
Q Consensus        61 ~L~~~~~~-l~--~l~~~~~~~~--~~~~~~L~~l~i~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~--~~~~~~~  133 (358)
                      .|++..+. +.  .+|..++..+  ...+++|+.+.+.   .+  .+..+|....+..+.+|+.|.+.++.  .++  ..
T Consensus       519 ~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls---~N--~L~~ip~~~~l~~L~~L~~L~Ls~N~l~~lp--~~  591 (876)
T 4ecn_A          519 SLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMG---YN--NLEEFPASASLQKMVKLGLLDCVHNKVRHLE--AF  591 (876)
T ss_dssp             EEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECC---SS--CCCBCCCHHHHTTCTTCCEEECTTSCCCBCC--CC
T ss_pred             EEECcCCCCcccccchHHHHhhhhcccccCCccEEEee---CC--cCCccCChhhhhcCCCCCEEECCCCCcccch--hh
Confidence            99998776 65  4777666432  1134478877762   22  12344432356677788999987764  344  34


Q ss_pred             hhccCccEEEeccCCCCCccCcccccCccC-CcEEEeecCCCceEecCCCCccccCCCccceeecccccccccccccccC
Q 039808          134 QILACCTAFYLDNHLHINSLSDFGVRSING-LKFCIISECPKIETVVDGKELTTVIFPSLENLSIHHLWNLTHICEGSVP  212 (358)
Q Consensus       134 ~~l~~L~~L~l~~~~~~~~l~~~~l~~l~~-L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~  212 (358)
                      ..+++|+.|++.++ .+..++. .+.++++ |++|++++|. +..++...  .....++|+.|.++++.-...++..+..
T Consensus       592 ~~L~~L~~L~Ls~N-~l~~lp~-~l~~l~~~L~~L~Ls~N~-L~~lp~~~--~~~~~~~L~~L~Ls~N~l~g~ip~l~~~  666 (876)
T 4ecn_A          592 GTNVKLTDLKLDYN-QIEEIPE-DFCAFTDQVEGLGFSHNK-LKYIPNIF--NAKSVYVMGSVDFSYNKIGSEGRNISCS  666 (876)
T ss_dssp             CTTSEESEEECCSS-CCSCCCT-TSCEECTTCCEEECCSSC-CCSCCSCC--CTTCSSCEEEEECCSSCTTTTSSSCSSC
T ss_pred             cCCCcceEEECcCC-ccccchH-HHhhccccCCEEECcCCC-CCcCchhh--hccccCCCCEEECcCCcCCCccccchhh
Confidence            56788999999888 5666665 4888888 9999998885 33454321  1112344777777766433322111111


Q ss_pred             CC--cCccccEEeEecCCCccccCchhhhccCCCccEEEEecCCcccccccccc------------------------cc
Q 039808          213 NG--SFARLRILSVHACPKLKFVFSSFMIHFMSNLEDLTVEDCPAIEEIISEGE------------------------II  266 (358)
Q Consensus       213 ~~--~~~~L~~L~l~~c~~l~~l~~~~~l~~l~~L~~L~i~~c~~l~~i~~~~~------------------------~~  266 (358)
                      .+  ..++|+.|++++|. +..+ |..++..+++|+.|+++++ .+..++....                        ..
T Consensus       667 l~~~~~~~L~~L~Ls~N~-L~~l-p~~~~~~l~~L~~L~Ls~N-~L~~ip~~~~~~~~~~l~nl~~L~~L~Ls~N~L~~l  743 (876)
T 4ecn_A          667 MDDYKGINASTVTLSYNE-IQKF-PTELFATGSPISTIILSNN-LMTSIPENSLKPKDGNYKNTYLLTTIDLRFNKLTSL  743 (876)
T ss_dssp             TTTCCCCCEEEEECCSSC-CCSC-CHHHHHTTCCCSEEECCSC-CCSCCCTTSSSCTTSCCTTGGGCCEEECCSSCCCCC
T ss_pred             hccccCCCcCEEEccCCc-CCcc-CHHHHccCCCCCEEECCCC-cCCccChHHhccccccccccCCccEEECCCCCCccc
Confidence            11  12356666666543 3332 2233345555666665554 2223321100                        00


Q ss_pred             ccccc--cCCCcceeccccccccccccCC--CCCCccEEeeeC------CcCCCccCCCCCCCCCeeEEEe
Q 039808          267 DSGCT--ALPRLKKLTLHYLPGLVTIWSS--AWPSLEYVSFYD------CPRLKNIGLGSNLKHSVMEIKA  327 (358)
Q Consensus       267 ~~~~~--~l~~L~~L~l~~c~~L~~~~~~--~~~~L~~L~i~~------C~~L~~lP~~~~~~~~L~~~~~  327 (358)
                      .....  .+++|+.|+++++ .++.+|..  .+++|+.|++++      |.....+|..+..+++|+.+..
T Consensus       744 p~~l~~~~l~~L~~L~Ls~N-~L~~lp~~l~~L~~L~~L~Ls~N~~ls~N~l~~~ip~~l~~L~~L~~L~L  813 (876)
T 4ecn_A          744 SDDFRATTLPYLSNMDVSYN-CFSSFPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQI  813 (876)
T ss_dssp             CGGGSTTTCTTCCEEECCSS-CCSSCCCGGGGCTTCCEEECCCCBCTTCCBCCCCCCTTGGGCSSCCEEEC
T ss_pred             hHHhhhccCCCcCEEEeCCC-CCCccchhhhcCCCCCEEECCCCCCcccccccccChHHHhcCCCCCEEEC
Confidence            01222  4556666666544 44445444  556666666654      3334445555555556665544

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=99.72  E-value=2.3e-17  Score=167.76  Aligned_cols=80  Identities=18%  Similarity=0.068  Sum_probs=53.0

Q ss_pred             ccCCCccEEEEecCCccccccccccccccccccCCCcceeccccccccccccCC--CCCCccEEeeeCCcCCCccCCCCC
Q 039808          240 HFMSNLEDLTVEDCPAIEEIISEGEIIDSGCTALPRLKKLTLHYLPGLVTIWSS--AWPSLEYVSFYDCPRLKNIGLGSN  317 (358)
Q Consensus       240 ~~l~~L~~L~i~~c~~l~~i~~~~~~~~~~~~~l~~L~~L~l~~c~~L~~~~~~--~~~~L~~L~i~~C~~L~~lP~~~~  317 (358)
                      ..+++|+.|++++|.-...++       ..+..+++|+.|+++++.-...+|..  .+++|++|++++|.....+|..+.
T Consensus       463 ~~l~~L~~L~L~~N~l~~~~p-------~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~  535 (768)
T 3rgz_A          463 MYVKTLETLILDFNDLTGEIP-------SGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELG  535 (768)
T ss_dssp             GGCTTCCEEECCSSCCCSCCC-------GGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGGG
T ss_pred             cCCCCceEEEecCCcccCcCC-------HHHhcCCCCCEEEccCCccCCcCChHHhcCCCCCEEECCCCcccCcCCHHHc
Confidence            444555555555443332322       34667788888888777533355554  788888888888876667888887


Q ss_pred             CCCCeeEEE
Q 039808          318 LKHSVMEIK  326 (358)
Q Consensus       318 ~~~~L~~~~  326 (358)
                      .+++|+.++
T Consensus       536 ~l~~L~~L~  544 (768)
T 3rgz_A          536 DCRSLIWLD  544 (768)
T ss_dssp             GCTTCCEEE
T ss_pred             CCCCCCEEE
Confidence            888888774

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=99.72  E-value=1.4e-16  Score=146.66  Aligned_cols=259  Identities=17%  Similarity=0.131  Sum_probs=158.2

Q ss_pred             hhcCccccEEEeeecCCCcceecccchhhhhhcCCCCCceEEEEccCchhHHHHHhhhccccccccceEEEEEeCccccc
Q 039808           22 ISRLHALKTLSIVVYPGDKRWYKDVKSVVLEVCNLTELSSLCFHFPEIKLLELFLQRCVAWNAQCLTEFRIVVGHDIKNI  101 (358)
Q Consensus        22 i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~~~~~~l~~l~~~~~~~~~~~~~~L~~l~i~~~~~~~~~  101 (358)
                      +..+.+|++|++++ +.+.       .. ..+..+++|++|++..+.+..++. +.     .+++|+.+.+.   .+  .
T Consensus        40 ~~~l~~L~~L~l~~-~~i~-------~~-~~~~~~~~L~~L~l~~n~i~~~~~-~~-----~l~~L~~L~L~---~n--~   99 (347)
T 4fmz_A           40 QEELESITKLVVAG-EKVA-------SI-QGIEYLTNLEYLNLNGNQITDISP-LS-----NLVKLTNLYIG---TN--K   99 (347)
T ss_dssp             HHHHTTCSEEECCS-SCCC-------CC-TTGGGCTTCCEEECCSSCCCCCGG-GT-----TCTTCCEEECC---SS--C
T ss_pred             chhcccccEEEEeC-Cccc-------cc-hhhhhcCCccEEEccCCccccchh-hh-----cCCcCCEEEcc---CC--c
Confidence            46899999999998 3332       11 247889999999998877776654 23     57788888762   11  1


Q ss_pred             cccCCcccccccccCCceEEeeCCC--CChHHHHhhccCccEEEeccCCCCCccCcccccCccCCcEEEeecCCCceEec
Q 039808          102 VSRVPDAVAFDYNKQGKCLRFINGE--NIPDAVLQILACCTAFYLDNHLHINSLSDFGVRSINGLKFCIISECPKIETVV  179 (358)
Q Consensus       102 ~~~~~~~~~l~~~~~L~~L~l~~~~--~~~~~~~~~l~~L~~L~l~~~~~~~~l~~~~l~~l~~L~~L~l~~~~~~~~~~  179 (358)
                      +...   ..+..+++|+.|.+.++.  .++.  ...+++|+.|++.++.....++  .+..+++|++|++++|... .+.
T Consensus       100 i~~~---~~~~~l~~L~~L~l~~n~i~~~~~--~~~l~~L~~L~l~~n~~~~~~~--~~~~l~~L~~L~l~~~~~~-~~~  171 (347)
T 4fmz_A          100 ITDI---SALQNLTNLRELYLNEDNISDISP--LANLTKMYSLNLGANHNLSDLS--PLSNMTGLNYLTVTESKVK-DVT  171 (347)
T ss_dssp             CCCC---GGGTTCTTCSEEECTTSCCCCCGG--GTTCTTCCEEECTTCTTCCCCG--GGTTCTTCCEEECCSSCCC-CCG
T ss_pred             ccCc---hHHcCCCcCCEEECcCCcccCchh--hccCCceeEEECCCCCCccccc--chhhCCCCcEEEecCCCcC-Cch
Confidence            1222   356777899999998875  3333  5678999999999997666665  3889999999999988533 221


Q ss_pred             CCCCccccCCCccceeecccccccccccccc------------------cCCCcCccccEEeEecCCCccccCchhhhcc
Q 039808          180 DGKELTTVIFPSLENLSIHHLWNLTHICEGS------------------VPNGSFARLRILSVHACPKLKFVFSSFMIHF  241 (358)
Q Consensus       180 ~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~------------------~~~~~~~~L~~L~l~~c~~l~~l~~~~~l~~  241 (358)
                      .     ...+++|++|+++++.- ..+....                  ...+.+++|++|++++|. ++.+.+   +..
T Consensus       172 ~-----~~~l~~L~~L~l~~n~l-~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~L~~L~l~~n~-l~~~~~---~~~  241 (347)
T 4fmz_A          172 P-----IANLTDLYSLSLNYNQI-EDISPLASLTSLHYFTAYVNQITDITPVANMTRLNSLKIGNNK-ITDLSP---LAN  241 (347)
T ss_dssp             G-----GGGCTTCSEEECTTSCC-CCCGGGGGCTTCCEEECCSSCCCCCGGGGGCTTCCEEECCSSC-CCCCGG---GTT
T ss_pred             h-----hccCCCCCEEEccCCcc-cccccccCCCccceeecccCCCCCCchhhcCCcCCEEEccCCc-cCCCcc---hhc
Confidence            1     45677888888877642 2221000                  002233445555554442 222211   344


Q ss_pred             CCCccEEEEecCCccccccccccccccccccCCCcceeccccccccccccCC-CCCCccEEeeeCCcCCCccCCCCCCCC
Q 039808          242 MSNLEDLTVEDCPAIEEIISEGEIIDSGCTALPRLKKLTLHYLPGLVTIWSS-AWPSLEYVSFYDCPRLKNIGLGSNLKH  320 (358)
Q Consensus       242 l~~L~~L~i~~c~~l~~i~~~~~~~~~~~~~l~~L~~L~l~~c~~L~~~~~~-~~~~L~~L~i~~C~~L~~lP~~~~~~~  320 (358)
                      +++|+.|++++| .+..+.        ....+++|+.|++++| .++.++.- .+++|++|++++|.--...|..+..++
T Consensus       242 l~~L~~L~l~~n-~l~~~~--------~~~~l~~L~~L~l~~n-~l~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~  311 (347)
T 4fmz_A          242 LSQLTWLEIGTN-QISDIN--------AVKDLTKLKMLNVGSN-QISDISVLNNLSQLNSLFLNNNQLGNEDMEVIGGLT  311 (347)
T ss_dssp             CTTCCEEECCSS-CCCCCG--------GGTTCTTCCEEECCSS-CCCCCGGGGGCTTCSEEECCSSCCCGGGHHHHHTCT
T ss_pred             CCCCCEEECCCC-ccCCCh--------hHhcCCCcCEEEccCC-ccCCChhhcCCCCCCEEECcCCcCCCcChhHhhccc
Confidence            555555555554 222221        3556667777777665 45555433 667777777777743333344445566


Q ss_pred             CeeEEEec
Q 039808          321 SVMEIKAE  328 (358)
Q Consensus       321 ~L~~~~~~  328 (358)
                      +|+.+...
T Consensus       312 ~L~~L~L~  319 (347)
T 4fmz_A          312 NLTTLFLS  319 (347)
T ss_dssp             TCSEEECC
T ss_pred             cCCEEEcc
Confidence            66666543

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=99.72  E-value=7.4e-17  Score=147.59  Aligned_cols=225  Identities=19%  Similarity=0.206  Sum_probs=103.0

Q ss_pred             ccceeccCCC---CccCCchhhcCccccEEEeeecCCCcceecccchhhhhhcCCCCCceEEEEccCchhHHHHHhhhcc
Q 039808            5 CNVEYVKMPP---QLISSGIISRLHALKTLSIVVYPGDKRWYKDVKSVVLEVCNLTELSSLCFHFPEIKLLELFLQRCVA   81 (358)
Q Consensus         5 ~~L~~l~L~~---~~ip~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~~~~~~l~~l~~~~~~~~~   81 (358)
                      .+++.|+|+.   ..+|+.+ +++.+|++|++++ +.+       ..++..++++++|++|++..+.+..+|..++    
T Consensus        81 ~~l~~L~L~~n~l~~lp~~l-~~l~~L~~L~L~~-n~l-------~~lp~~~~~l~~L~~L~Ls~n~l~~lp~~l~----  147 (328)
T 4fcg_A           81 PGRVALELRSVPLPQFPDQA-FRLSHLQHMTIDA-AGL-------MELPDTMQQFAGLETLTLARNPLRALPASIA----  147 (328)
T ss_dssp             TTCCEEEEESSCCSSCCSCG-GGGTTCSEEEEES-SCC-------CCCCSCGGGGTTCSEEEEESCCCCCCCGGGG----
T ss_pred             cceeEEEccCCCchhcChhh-hhCCCCCEEECCC-CCc-------cchhHHHhccCCCCEEECCCCccccCcHHHh----
Confidence            4456666655   3456653 4677777777766 222       2234456667777777776665555443222    


Q ss_pred             ccccccceEEEEEeCccccccccCCcccccccccCCceEEeeCCCCChHHHHhhccCccEEEeccCCCCCccCcccccCc
Q 039808           82 WNAQCLTEFRIVVGHDIKNIVSRVPDAVAFDYNKQGKCLRFINGENIPDAVLQILACCTAFYLDNHLHINSLSDFGVRSI  161 (358)
Q Consensus        82 ~~~~~L~~l~i~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~l~~~~l~~l  161 (358)
                       .+++|+.+.+......    ...|.        .+....+.       .....+++|+.|++.++ .+..++. .++++
T Consensus       148 -~l~~L~~L~L~~n~~~----~~~p~--------~~~~~~~~-------~~~~~l~~L~~L~L~~n-~l~~lp~-~l~~l  205 (328)
T 4fcg_A          148 -SLNRLRELSIRACPEL----TELPE--------PLASTDAS-------GEHQGLVNLQSLRLEWT-GIRSLPA-SIANL  205 (328)
T ss_dssp             -GCTTCCEEEEEEETTC----CCCCS--------CSEEEC-C-------CCEEESTTCCEEEEEEE-CCCCCCG-GGGGC
T ss_pred             -cCcCCCEEECCCCCCc----cccCh--------hHhhccch-------hhhccCCCCCEEECcCC-CcCcchH-hhcCC
Confidence             3344444444211100    11111        00000000       00122455555555555 4444443 35556


Q ss_pred             cCCcEEEeecCCCceEecCCCCccccCCCccceeecccccccccccccccCCCcCccccEEeEecCCCccccCchhhhcc
Q 039808          162 NGLKFCIISECPKIETVVDGKELTTVIFPSLENLSIHHLWNLTHICEGSVPNGSFARLRILSVHACPKLKFVFSSFMIHF  241 (358)
Q Consensus       162 ~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~l~~  241 (358)
                      ++|++|++++|.. ..++..    ...+++|++|+++++...+.+   +...+.+++|++|++.+|.....++.  .++.
T Consensus       206 ~~L~~L~L~~N~l-~~l~~~----l~~l~~L~~L~Ls~n~~~~~~---p~~~~~l~~L~~L~L~~n~~~~~~p~--~~~~  275 (328)
T 4fcg_A          206 QNLKSLKIRNSPL-SALGPA----IHHLPKLEELDLRGCTALRNY---PPIFGGRAPLKRLILKDCSNLLTLPL--DIHR  275 (328)
T ss_dssp             TTCCEEEEESSCC-CCCCGG----GGGCTTCCEEECTTCTTCCBC---CCCTTCCCCCCEEECTTCTTCCBCCT--TGGG
T ss_pred             CCCCEEEccCCCC-CcCchh----hccCCCCCEEECcCCcchhhh---HHHhcCCCCCCEEECCCCCchhhcch--hhhc
Confidence            6666666655532 222221    334455555555554444333   22233445555555555544443311  2344


Q ss_pred             CCCccEEEEecCCccccccccccccccccccCCCcceecc
Q 039808          242 MSNLEDLTVEDCPAIEEIISEGEIIDSGCTALPRLKKLTL  281 (358)
Q Consensus       242 l~~L~~L~i~~c~~l~~i~~~~~~~~~~~~~l~~L~~L~l  281 (358)
                      +++|+.|++++|..++.+|       ..++.+++|+.+.+
T Consensus       276 l~~L~~L~L~~n~~~~~iP-------~~l~~L~~L~~l~l  308 (328)
T 4fcg_A          276 LTQLEKLDLRGCVNLSRLP-------SLIAQLPANCIILV  308 (328)
T ss_dssp             CTTCCEEECTTCTTCCCCC-------GGGGGSCTTCEEEC
T ss_pred             CCCCCEEeCCCCCchhhcc-------HHHhhccCceEEeC
Confidence            5555555555555444444       33444455554444

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=99.71  E-value=3.5e-17  Score=166.36  Aligned_cols=32  Identities=13%  Similarity=0.253  Sum_probs=21.2

Q ss_pred             cccceeccCCC----CccCCchhhcCccccEEEeee
Q 039808            4 SCNVEYVKMPP----QLISSGIISRLHALKTLSIVV   35 (358)
Q Consensus         4 l~~L~~l~L~~----~~ip~~~i~~L~~L~~L~l~~   35 (358)
                      +.+|++|+++.    +.+|...++++++|++|++++
T Consensus       317 l~~L~~L~L~~n~l~~~ip~~~l~~l~~L~~L~Ls~  352 (768)
T 3rgz_A          317 CSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSF  352 (768)
T ss_dssp             CTTCCEEECCSSEEEEECCHHHHTTCTTCCEEECCS
T ss_pred             CCCccEEECCCCcccCcCCHHHHhcCCCCCEEeCcC
Confidence            45677777766    245665566777777777766

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=99.71  E-value=9.9e-17  Score=159.61  Aligned_cols=301  Identities=10%  Similarity=0.021  Sum_probs=175.5

Q ss_pred             CcccceeccCCC---Cc------------------cCCchhh--cCccccEEEeeecCCCcceecccchhhhhhcCCCCC
Q 039808            3 LSCNVEYVKMPP---QL------------------ISSGIIS--RLHALKTLSIVVYPGDKRWYKDVKSVVLEVCNLTEL   59 (358)
Q Consensus         3 ~l~~L~~l~L~~---~~------------------ip~~~i~--~L~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~l~~L   59 (358)
                      -+++|++|+|+.   ..                  +|+. ++  ++++|++|++++ +.+.      ..++..++++++|
T Consensus       204 ~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~-l~~~~l~~L~~L~L~~-n~l~------~~~p~~l~~l~~L  275 (636)
T 4eco_A          204 RLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTED-LKWDNLKDLTDVEVYN-CPNL------TKLPTFLKALPEM  275 (636)
T ss_dssp             GCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSC-CCGGGCTTCCEEEEEC-CTTC------SSCCTTTTTCSSC
T ss_pred             cccCCCEEECcCCccccccccccccccccchhcccCchh-hhhcccCCCCEEEecC-CcCC------ccChHHHhcCCCC
Confidence            367899999987   33                  7776 46  999999999998 3221      3456789999999


Q ss_pred             ceEEEEccC-ch--hHHHHHhhhcc-ccccccceEEEEEeCccccccccCCcccccccccCCceEEeeCCC---CChHHH
Q 039808           60 SSLCFHFPE-IK--LLELFLQRCVA-WNAQCLTEFRIVVGHDIKNIVSRVPDAVAFDYNKQGKCLRFINGE---NIPDAV  132 (358)
Q Consensus        60 ~~L~~~~~~-l~--~l~~~~~~~~~-~~~~~L~~l~i~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~---~~~~~~  132 (358)
                      ++|++..+. ++  .+|..++.... ..+++|+.+.+.   .+  .+..+|....+..+.+|+.|.+.++.   .++  .
T Consensus       276 ~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~---~n--~l~~ip~~~~l~~l~~L~~L~L~~N~l~g~ip--~  348 (636)
T 4eco_A          276 QLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIG---YN--NLKTFPVETSLQKMKKLGMLECLYNQLEGKLP--A  348 (636)
T ss_dssp             CEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECC---SS--CCSSCCCHHHHTTCTTCCEEECCSCCCEEECC--C
T ss_pred             CEEECcCCCCCccccchHHHHhhhccccCCCCCEEECC---CC--cCCccCchhhhccCCCCCEEeCcCCcCccchh--h
Confidence            999998776 65  47766653210 123778877762   21  12344432256667788888887764   344  3


Q ss_pred             HhhccCccEEEeccCCCCCccCcccccCccC-CcEEEeecCCCceEecCCCCccccCCCccceeeccccccccccccccc
Q 039808          133 LQILACCTAFYLDNHLHINSLSDFGVRSING-LKFCIISECPKIETVVDGKELTTVIFPSLENLSIHHLWNLTHICEGSV  211 (358)
Q Consensus       133 ~~~l~~L~~L~l~~~~~~~~l~~~~l~~l~~-L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~  211 (358)
                      ...+++|+.|++.++ .+..++. .+.++++ |++|++++|.. ..++...  ....+++|++|+++++.-...++..-.
T Consensus       349 ~~~l~~L~~L~L~~N-~l~~lp~-~l~~l~~~L~~L~Ls~N~l-~~lp~~~--~~~~l~~L~~L~Ls~N~l~~~~p~~l~  423 (636)
T 4eco_A          349 FGSEIKLASLNLAYN-QITEIPA-NFCGFTEQVENLSFAHNKL-KYIPNIF--DAKSVSVMSAIDFSYNEIGSVDGKNFD  423 (636)
T ss_dssp             CEEEEEESEEECCSS-EEEECCT-TSEEECTTCCEEECCSSCC-SSCCSCC--CTTCSSCEEEEECCSSCTTTTTTCSSC
T ss_pred             hCCCCCCCEEECCCC-ccccccH-hhhhhcccCcEEEccCCcC-cccchhh--hhcccCccCEEECcCCcCCCcchhhhc
Confidence            445778888888887 6666665 4778888 88888888753 3444321  112244677777776543332211000


Q ss_pred             --CCC--cCccccEEeEecCCCccccCchhhhccCCCccEEEEecCCcccccccccc-----------------------
Q 039808          212 --PNG--SFARLRILSVHACPKLKFVFSSFMIHFMSNLEDLTVEDCPAIEEIISEGE-----------------------  264 (358)
Q Consensus       212 --~~~--~~~~L~~L~l~~c~~l~~l~~~~~l~~l~~L~~L~i~~c~~l~~i~~~~~-----------------------  264 (358)
                        ..+  .+++|++|+++++. ++.+ |...+..+++|+.|+++++. +..++....                       
T Consensus       424 ~~~~~~~~~~~L~~L~Ls~N~-l~~l-p~~~~~~l~~L~~L~Ls~N~-l~~i~~~~~~~~~~~~~~l~~L~~L~Ls~N~l  500 (636)
T 4eco_A          424 PLDPTPFKGINVSSINLSNNQ-ISKF-PKELFSTGSPLSSINLMGNM-LTEIPKNSLKDENENFKNTYLLTSIDLRFNKL  500 (636)
T ss_dssp             TTCSSCCCCCCEEEEECCSSC-CCSC-CTHHHHTTCCCSEEECCSSC-CSBCCSSSSEETTEECTTGGGCCEEECCSSCC
T ss_pred             ccccccccCCCCCEEECcCCc-cCcC-CHHHHccCCCCCEEECCCCC-CCCcCHHHhccccccccccCCccEEECcCCcC
Confidence              000  33466666666653 3333 22344456666666666542 223331100                       


Q ss_pred             -ccccccc--cCCCcceeccccccccccccCC--CCCCccEEeeeC------CcCCCccCCCCCCCCCeeEEEe
Q 039808          265 -IIDSGCT--ALPRLKKLTLHYLPGLVTIWSS--AWPSLEYVSFYD------CPRLKNIGLGSNLKHSVMEIKA  327 (358)
Q Consensus       265 -~~~~~~~--~l~~L~~L~l~~c~~L~~~~~~--~~~~L~~L~i~~------C~~L~~lP~~~~~~~~L~~~~~  327 (358)
                       .......  .+++|+.|+++++ .++.+|..  .+++|+.|++++      +.....+|..+..+++|+.+..
T Consensus       501 ~~lp~~~~~~~l~~L~~L~Ls~N-~l~~ip~~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p~~l~~l~~L~~L~L  573 (636)
T 4eco_A          501 TKLSDDFRATTLPYLVGIDLSYN-SFSKFPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQI  573 (636)
T ss_dssp             CBCCGGGSTTTCTTCCEEECCSS-CCSSCCCGGGGCSSCCEEECCSCBCTTCCBCCCCCCTTGGGCSSCCEEEC
T ss_pred             CccChhhhhccCCCcCEEECCCC-CCCCcChhhhcCCCCCEEECCCCcccccCcccccChHHHhcCCCCCEEEC
Confidence             0002232  5666666666554 45555544  566666666643      3335556666666666666644

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=99.71  E-value=1.2e-15  Score=146.26  Aligned_cols=198  Identities=14%  Similarity=0.146  Sum_probs=102.7

Q ss_pred             cccccCCceEEeeCCCCChHHHHhhccCccEEEeccCCCCCccCcccccCccCCcEEEeecCCCceEecCC---------
Q 039808          111 FDYNKQGKCLRFINGENIPDAVLQILACCTAFYLDNHLHINSLSDFGVRSINGLKFCIISECPKIETVVDG---------  181 (358)
Q Consensus       111 l~~~~~L~~L~l~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~l~~~~l~~l~~L~~L~l~~~~~~~~~~~~---------  181 (358)
                      +..++.|+.|.+.++.-........+++|+.|++.++ .+..+..  ++.+++|++|++++|. +..+ +.         
T Consensus       173 ~~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~l~~n-~l~~~~~--~~~l~~L~~L~l~~n~-l~~~-~~l~~l~~L~~  247 (466)
T 1o6v_A          173 LANLTTLERLDISSNKVSDISVLAKLTNLESLIATNN-QISDITP--LGILTNLDELSLNGNQ-LKDI-GTLASLTNLTD  247 (466)
T ss_dssp             GTTCTTCCEEECCSSCCCCCGGGGGCTTCSEEECCSS-CCCCCGG--GGGCTTCCEEECCSSC-CCCC-GGGGGCTTCSE
T ss_pred             hccCCCCCEEECcCCcCCCChhhccCCCCCEEEecCC-ccccccc--ccccCCCCEEECCCCC-cccc-hhhhcCCCCCE
Confidence            3344456666665543111112334555666665555 3333321  4445555555555442 1111 00         


Q ss_pred             ---------CCccccCCCccceeecccccccccccccccCCCcCccccEEeEecCCCccccCchhhhccCCCccEEEEec
Q 039808          182 ---------KELTTVIFPSLENLSIHHLWNLTHICEGSVPNGSFARLRILSVHACPKLKFVFSSFMIHFMSNLEDLTVED  252 (358)
Q Consensus       182 ---------~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~l~~l~~L~~L~i~~  252 (358)
                               .......+++|++|.++++.- ..+   + ..+.+++|+.|++++|. ++.+.+   ++.+++|+.|++++
T Consensus       248 L~l~~n~l~~~~~~~~l~~L~~L~l~~n~l-~~~---~-~~~~l~~L~~L~L~~n~-l~~~~~---~~~l~~L~~L~L~~  318 (466)
T 1o6v_A          248 LDLANNQISNLAPLSGLTKLTELKLGANQI-SNI---S-PLAGLTALTNLELNENQ-LEDISP---ISNLKNLTYLTLYF  318 (466)
T ss_dssp             EECCSSCCCCCGGGTTCTTCSEEECCSSCC-CCC---G-GGTTCTTCSEEECCSSC-CSCCGG---GGGCTTCSEEECCS
T ss_pred             EECCCCccccchhhhcCCCCCEEECCCCcc-Ccc---c-cccCCCccCeEEcCCCc-ccCchh---hcCCCCCCEEECcC
Confidence                     000023345555555555422 111   1 13345666666666653 443321   45667777777776


Q ss_pred             CCccccccccccccccccccCCCcceeccccccccccccCC-CCCCccEEeeeCCcCCCccCCCCCCCCCeeEEEecccc
Q 039808          253 CPAIEEIISEGEIIDSGCTALPRLKKLTLHYLPGLVTIWSS-AWPSLEYVSFYDCPRLKNIGLGSNLKHSVMEIKAEKSW  331 (358)
Q Consensus       253 c~~l~~i~~~~~~~~~~~~~l~~L~~L~l~~c~~L~~~~~~-~~~~L~~L~i~~C~~L~~lP~~~~~~~~L~~~~~~~~~  331 (358)
                      |. +..++        ....+++|+.|++++| .++.++.- .+++|+.|++++|. +..++. ...+++|+.+.....-
T Consensus       319 n~-l~~~~--------~~~~l~~L~~L~l~~n-~l~~~~~l~~l~~L~~L~l~~n~-l~~~~~-~~~l~~L~~L~l~~n~  386 (466)
T 1o6v_A          319 NN-ISDIS--------PVSSLTKLQRLFFYNN-KVSDVSSLANLTNINWLSAGHNQ-ISDLTP-LANLTRITQLGLNDQA  386 (466)
T ss_dssp             SC-CSCCG--------GGGGCTTCCEEECCSS-CCCCCGGGTTCTTCCEEECCSSC-CCBCGG-GTTCTTCCEEECCCEE
T ss_pred             Cc-CCCch--------hhccCccCCEeECCCC-ccCCchhhccCCCCCEEeCCCCc-cCccch-hhcCCCCCEEeccCCc
Confidence            63 33322        2567888888888777 56665433 78888888888885 444433 5667778777654333


Q ss_pred             ccc
Q 039808          332 WDD  334 (358)
Q Consensus       332 ~~~  334 (358)
                      |.+
T Consensus       387 ~~~  389 (466)
T 1o6v_A          387 WTN  389 (466)
T ss_dssp             EEC
T ss_pred             ccC
Confidence            333

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=99.71  E-value=4.9e-16  Score=148.96  Aligned_cols=269  Identities=17%  Similarity=0.211  Sum_probs=161.3

Q ss_pred             cccceeccCCC---CccCCchhhcCccccEEEeeecCCCcceecccchhhhhhcCCCCCceEEEEccCchhHHHHHhhhc
Q 039808            4 SCNVEYVKMPP---QLISSGIISRLHALKTLSIVVYPGDKRWYKDVKSVVLEVCNLTELSSLCFHFPEIKLLELFLQRCV   80 (358)
Q Consensus         4 l~~L~~l~L~~---~~ip~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~~~~~~l~~l~~~~~~~~   80 (358)
                      +.+|++|+++.   ..+|+  ++++.+|++|++++ +.+.       ... .+.++++|++|++..+.+..++. +.   
T Consensus        67 l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~l~~-n~l~-------~~~-~~~~l~~L~~L~L~~n~l~~~~~-~~---  131 (466)
T 1o6v_A           67 LNNLTQINFSNNQLTDITP--LKNLTKLVDILMNN-NQIA-------DIT-PLANLTNLTGLTLFNNQITDIDP-LK---  131 (466)
T ss_dssp             CTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCS-SCCC-------CCG-GGTTCTTCCEEECCSSCCCCCGG-GT---
T ss_pred             hcCCCEEECCCCccCCchh--hhccccCCEEECCC-Cccc-------cCh-hhcCCCCCCEEECCCCCCCCChH-Hc---
Confidence            45667777766   23343  56677777777766 2221       112 27888999999987777766543 23   


Q ss_pred             cccccccceEEEEEeCccccccccCCcccccccccCCceEEeeCCCCChHHHHhhccCccEEEeccCCCCCccCcccccC
Q 039808           81 AWNAQCLTEFRIVVGHDIKNIVSRVPDAVAFDYNKQGKCLRFINGENIPDAVLQILACCTAFYLDNHLHINSLSDFGVRS  160 (358)
Q Consensus        81 ~~~~~~L~~l~i~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~l~~~~l~~  160 (358)
                        .+++|+.+.+....     +...+   .+..+.+|+.|.+.+....... ...+++|+.|++.++ .+..++  .+..
T Consensus       132 --~l~~L~~L~l~~n~-----l~~~~---~~~~l~~L~~L~l~~~~~~~~~-~~~l~~L~~L~l~~n-~l~~~~--~l~~  197 (466)
T 1o6v_A          132 --NLTNLNRLELSSNT-----ISDIS---ALSGLTSLQQLSFGNQVTDLKP-LANLTTLERLDISSN-KVSDIS--VLAK  197 (466)
T ss_dssp             --TCTTCSEEEEEEEE-----ECCCG---GGTTCTTCSEEEEEESCCCCGG-GTTCTTCCEEECCSS-CCCCCG--GGGG
T ss_pred             --CCCCCCEEECCCCc-----cCCCh---hhccCCcccEeecCCcccCchh-hccCCCCCEEECcCC-cCCCCh--hhcc
Confidence              67888888873221     12222   4566678899988654322122 556899999999998 666665  4789


Q ss_pred             ccCCcEEEeecCCCceEecCCCCccccCCCccceeecccccccccccccccCCCcCccccEEeEecCCCccccCchhhhc
Q 039808          161 INGLKFCIISECPKIETVVDGKELTTVIFPSLENLSIHHLWNLTHICEGSVPNGSFARLRILSVHACPKLKFVFSSFMIH  240 (358)
Q Consensus       161 l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~l~  240 (358)
                      +++|++|++++|.... +..     ...+++|++|+++++. ++.+    ...+.+++|++|++++|. +....+   +.
T Consensus       198 l~~L~~L~l~~n~l~~-~~~-----~~~l~~L~~L~l~~n~-l~~~----~~l~~l~~L~~L~l~~n~-l~~~~~---~~  262 (466)
T 1o6v_A          198 LTNLESLIATNNQISD-ITP-----LGILTNLDELSLNGNQ-LKDI----GTLASLTNLTDLDLANNQ-ISNLAP---LS  262 (466)
T ss_dssp             CTTCSEEECCSSCCCC-CGG-----GGGCTTCCEEECCSSC-CCCC----GGGGGCTTCSEEECCSSC-CCCCGG---GT
T ss_pred             CCCCCEEEecCCcccc-ccc-----ccccCCCCEEECCCCC-cccc----hhhhcCCCCCEEECCCCc-cccchh---hh
Confidence            9999999999885332 211     3456777777776653 2222    112344555555555542 222211   34


Q ss_pred             cCCCccEEEEecCC---------------------ccccccccccccccccccCCCcceeccccccccccccCC-CCCCc
Q 039808          241 FMSNLEDLTVEDCP---------------------AIEEIISEGEIIDSGCTALPRLKKLTLHYLPGLVTIWSS-AWPSL  298 (358)
Q Consensus       241 ~l~~L~~L~i~~c~---------------------~l~~i~~~~~~~~~~~~~l~~L~~L~l~~c~~L~~~~~~-~~~~L  298 (358)
                      .+++|+.|++++|.                     .+..++        ....+++|+.|++++| .++.++.. .+++|
T Consensus       263 ~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~L~~n~l~~~~--------~~~~l~~L~~L~L~~n-~l~~~~~~~~l~~L  333 (466)
T 1o6v_A          263 GLTKLTELKLGANQISNISPLAGLTALTNLELNENQLEDIS--------PISNLKNLTYLTLYFN-NISDISPVSSLTKL  333 (466)
T ss_dssp             TCTTCSEEECCSSCCCCCGGGTTCTTCSEEECCSSCCSCCG--------GGGGCTTCSEEECCSS-CCSCCGGGGGCTTC
T ss_pred             cCCCCCEEECCCCccCccccccCCCccCeEEcCCCcccCch--------hhcCCCCCCEEECcCC-cCCCchhhccCccC
Confidence            44555555554432                     122221        2556777777777766 45544433 77888


Q ss_pred             cEEeeeCCcCCCccCCCCCCCCCeeEEEe
Q 039808          299 EYVSFYDCPRLKNIGLGSNLKHSVMEIKA  327 (358)
Q Consensus       299 ~~L~i~~C~~L~~lP~~~~~~~~L~~~~~  327 (358)
                      ++|++++| +++.+| ....+++|+.+..
T Consensus       334 ~~L~l~~n-~l~~~~-~l~~l~~L~~L~l  360 (466)
T 1o6v_A          334 QRLFFYNN-KVSDVS-SLANLTNINWLSA  360 (466)
T ss_dssp             CEEECCSS-CCCCCG-GGTTCTTCCEEEC
T ss_pred             CEeECCCC-ccCCch-hhccCCCCCEEeC
Confidence            88888887 466664 4456677777754

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.70  E-value=1.1e-16  Score=158.32  Aligned_cols=282  Identities=15%  Similarity=0.139  Sum_probs=183.8

Q ss_pred             cccceeccCCC---CccCCchhhcCccccEEEeeecCCCcceecccchhhhhhcCCCCCceEEEEccCchhHHHH-Hhhh
Q 039808            4 SCNVEYVKMPP---QLISSGIISRLHALKTLSIVVYPGDKRWYKDVKSVVLEVCNLTELSSLCFHFPEIKLLELF-LQRC   79 (358)
Q Consensus         4 l~~L~~l~L~~---~~ip~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~~~~~~l~~l~~~-~~~~   79 (358)
                      +.++++++++.   ..+|+.+++++++|++|++++ +.+..      ..+..+.++++|++|++..+.+..++.. ++  
T Consensus        50 l~~l~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~-n~l~~------~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~--  120 (597)
T 3oja_B           50 LNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLND-LQIEE------IDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQ--  120 (597)
T ss_dssp             GCCCSEEEESSCEESEECTHHHHHCCCCSEEECTT-SCCCE------ECTTTTTTCTTCCEEECCSSCCCCCCTTTTT--
T ss_pred             CCCceEEEeeCCCCCCcCHHHHccCCCCcEEECCC-CCCCC------CChHHhcCCCCCCEEECCCCcCCCCCHHHHc--
Confidence            45677787776   568888888999999999988 33321      1234678889999999877777665421 12  


Q ss_pred             ccccccccceEEEEEeCccccccccCCcccccccccCCceEEeeCCC--CChHHHHhhccCccEEEeccCCCCCccCccc
Q 039808           80 VAWNAQCLTEFRIVVGHDIKNIVSRVPDAVAFDYNKQGKCLRFINGE--NIPDAVLQILACCTAFYLDNHLHINSLSDFG  157 (358)
Q Consensus        80 ~~~~~~~L~~l~i~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~--~~~~~~~~~l~~L~~L~l~~~~~~~~l~~~~  157 (358)
                         .+++|+.+.+.   .+  .+..+|. ..+..+.+|+.|.+.++.  +++......+++|+.|++.++ .+..++   
T Consensus       121 ---~l~~L~~L~L~---~n--~l~~l~~-~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~---  187 (597)
T 3oja_B          121 ---NVPLLTVLVLE---RN--DLSSLPR-GIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSN-RLTHVD---  187 (597)
T ss_dssp             ---TCTTCCEEECC---SS--CCCCCCT-TTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTS-CCSBCC---
T ss_pred             ---CCCCCCEEEee---CC--CCCCCCH-HHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCC-CCCCcC---
Confidence               45667766652   11  1233332 234566788888887764  445444566788888888887 555543   


Q ss_pred             ccCccCCcEEEeecCCCceEecCCC-------------CccccCCCccceeecccccccccccccccCCCcCccccEEeE
Q 039808          158 VRSINGLKFCIISECPKIETVVDGK-------------ELTTVIFPSLENLSIHHLWNLTHICEGSVPNGSFARLRILSV  224 (358)
Q Consensus       158 l~~l~~L~~L~l~~~~~~~~~~~~~-------------~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l  224 (358)
                      ++.+++|+.|++++|.. ..+....             ......+++|+.|.++++.- ..    +...+.+++|+.|++
T Consensus       188 ~~~l~~L~~L~l~~n~l-~~l~~~~~L~~L~ls~n~l~~~~~~~~~~L~~L~L~~n~l-~~----~~~l~~l~~L~~L~L  261 (597)
T 3oja_B          188 LSLIPSLFHANVSYNLL-STLAIPIAVEELDASHNSINVVRGPVNVELTILKLQHNNL-TD----TAWLLNYPGLVEVDL  261 (597)
T ss_dssp             GGGCTTCSEEECCSSCC-SEEECCTTCSEEECCSSCCCEEECSCCSCCCEEECCSSCC-CC----CGGGGGCTTCSEEEC
T ss_pred             hhhhhhhhhhhcccCcc-ccccCCchhheeeccCCcccccccccCCCCCEEECCCCCC-CC----ChhhccCCCCCEEEC
Confidence            55666666666665522 2111000             00012235777777777642 22    123456788999999


Q ss_pred             ecCCCccccCchhhhccCCCccEEEEecCCccccccccccccccccccCCCcceeccccccccccccCC--CCCCccEEe
Q 039808          225 HACPKLKFVFSSFMIHFMSNLEDLTVEDCPAIEEIISEGEIIDSGCTALPRLKKLTLHYLPGLVTIWSS--AWPSLEYVS  302 (358)
Q Consensus       225 ~~c~~l~~l~~~~~l~~l~~L~~L~i~~c~~l~~i~~~~~~~~~~~~~l~~L~~L~l~~c~~L~~~~~~--~~~~L~~L~  302 (358)
                      +++. +....| ..++.+++|+.|+++++ .+..++       .....+|+|+.|+++++ .+..++..  .+++|+.|+
T Consensus       262 s~N~-l~~~~~-~~~~~l~~L~~L~Ls~N-~l~~l~-------~~~~~l~~L~~L~Ls~N-~l~~i~~~~~~l~~L~~L~  330 (597)
T 3oja_B          262 SYNE-LEKIMY-HPFVKMQRLERLYISNN-RLVALN-------LYGQPIPTLKVLDLSHN-HLLHVERNQPQFDRLENLY  330 (597)
T ss_dssp             CSSC-CCEEES-GGGTTCSSCCEEECTTS-CCCEEE-------CSSSCCTTCCEEECCSS-CCCCCGGGHHHHTTCSEEE
T ss_pred             CCCc-cCCCCH-HHhcCccCCCEEECCCC-CCCCCC-------cccccCCCCcEEECCCC-CCCccCcccccCCCCCEEE
Confidence            8874 555434 34678899999999886 455554       34567899999999877 67777766  789999999


Q ss_pred             eeCCcCCCccCCCCCCCCCeeEEEe
Q 039808          303 FYDCPRLKNIGLGSNLKHSVMEIKA  327 (358)
Q Consensus       303 i~~C~~L~~lP~~~~~~~~L~~~~~  327 (358)
                      +++|. +..+|  ...+++|+.+..
T Consensus       331 L~~N~-l~~~~--~~~~~~L~~L~l  352 (597)
T 3oja_B          331 LDHNS-IVTLK--LSTHHTLKNLTL  352 (597)
T ss_dssp             CCSSC-CCCCC--CCTTCCCSEEEC
T ss_pred             CCCCC-CCCcC--hhhcCCCCEEEe
Confidence            99985 77776  445677877753

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=99.70  E-value=4.9e-17  Score=160.80  Aligned_cols=287  Identities=14%  Similarity=0.078  Sum_probs=191.6

Q ss_pred             cceeccCCC---CccCCchhhcCccccEEEeeecCCCcceecccchhhhhhcCCCCCceEEEEccCchhHH-HHHhhhcc
Q 039808            6 NVEYVKMPP---QLISSGIISRLHALKTLSIVVYPGDKRWYKDVKSVVLEVCNLTELSSLCFHFPEIKLLE-LFLQRCVA   81 (358)
Q Consensus         6 ~L~~l~L~~---~~ip~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~~~~~~l~~l~-~~~~~~~~   81 (358)
                      +|+.++++.   ..+++..++++++|++|++++ +.+       ..++..+.++++|++|.+..+.+..++ ..+.    
T Consensus       255 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~-n~l-------~~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~----  322 (606)
T 3t6q_A          255 SVESINLQKHYFFNISSNTFHCFSGLQELDLTA-THL-------SELPSGLVGLSTLKKLVLSANKFENLCQISAS----  322 (606)
T ss_dssp             EEEEEECTTCCCSSCCTTTTTTCTTCSEEECTT-SCC-------SCCCSSCCSCTTCCEEECTTCCCSBGGGGCGG----
T ss_pred             ceeEEEeecCccCccCHHHhccccCCCEEeccC-Ccc-------CCCChhhcccccCCEEECccCCcCcCchhhhh----
Confidence            678888877   457777788999999999998 333       344556889999999999777766543 2222    


Q ss_pred             ccccccceEEEEEeCccccccccCCcccccccccCCceEEeeCCC--CCh--HHHHhhccCccEEEeccCCCCCccCccc
Q 039808           82 WNAQCLTEFRIVVGHDIKNIVSRVPDAVAFDYNKQGKCLRFINGE--NIP--DAVLQILACCTAFYLDNHLHINSLSDFG  157 (358)
Q Consensus        82 ~~~~~L~~l~i~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~--~~~--~~~~~~l~~L~~L~l~~~~~~~~l~~~~  157 (358)
                       .+++|+.+.+.   .+ ......+. ..+..+.+|+.|.+.++.  +..  ......+++|+.|++.++ .+..+....
T Consensus       323 -~l~~L~~L~l~---~n-~~~~~~~~-~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~  395 (606)
T 3t6q_A          323 -NFPSLTHLSIK---GN-TKRLELGT-GCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYN-EPLSLKTEA  395 (606)
T ss_dssp             -GCTTCSEEECC---SC-SSCCBCCS-STTTTCTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSC-SCEEECTTT
T ss_pred             -ccCcCCEEECC---CC-Ccccccch-hhhhccCcCCEEECCCCccccccCcchhcccCCCCCEEECCCC-cCCcCCHHH
Confidence             56778877762   11 00012221 245667788999987764  222  223456889999999988 666654446


Q ss_pred             ccCccCCcEEEeecCCCceEecCCCCccccCCCccceeecccccccccccccccCCCcCccccEEeEecCCCccc-cCch
Q 039808          158 VRSINGLKFCIISECPKIETVVDGKELTTVIFPSLENLSIHHLWNLTHICEGSVPNGSFARLRILSVHACPKLKF-VFSS  236 (358)
Q Consensus       158 l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~-l~~~  236 (358)
                      ++++++|++|++++|......+..   ....+++|++|+++++.-....   +...+.+++|++|++++|.--.. +...
T Consensus       396 ~~~l~~L~~L~l~~n~l~~~~~~~---~~~~l~~L~~L~l~~n~l~~~~---~~~~~~l~~L~~L~L~~n~l~~~~~~~~  469 (606)
T 3t6q_A          396 FKECPQLELLDLAFTRLKVKDAQS---PFQNLHLLKVLNLSHSLLDISS---EQLFDGLPALQHLNLQGNHFPKGNIQKT  469 (606)
T ss_dssp             TTTCTTCSEEECTTCCEECCTTCC---TTTTCTTCCEEECTTCCCBTTC---TTTTTTCTTCCEEECTTCBCGGGEECSS
T ss_pred             hcCCccCCeEECCCCcCCCcccch---hhhCcccCCEEECCCCccCCcC---HHHHhCCCCCCEEECCCCCCCccccccc
Confidence            888999999999887433222111   1456789999999887543322   22345688999999998853321 1122


Q ss_pred             hhhccCCCccEEEEecCCccccccccccccccccccCCCcceeccccccccccccCC---CCCCccEEeeeCCcCCCccC
Q 039808          237 FMIHFMSNLEDLTVEDCPAIEEIISEGEIIDSGCTALPRLKKLTLHYLPGLVTIWSS---AWPSLEYVSFYDCPRLKNIG  313 (358)
Q Consensus       237 ~~l~~l~~L~~L~i~~c~~l~~i~~~~~~~~~~~~~l~~L~~L~l~~c~~L~~~~~~---~~~~L~~L~i~~C~~L~~lP  313 (358)
                      ..++.+++|+.|++++|. +..++      ...+..+++|+.|+++++ .++.....   .+++| .|++++|. ++.+|
T Consensus       470 ~~~~~l~~L~~L~Ls~n~-l~~~~------~~~~~~l~~L~~L~Ls~N-~l~~~~~~~l~~l~~L-~L~L~~N~-l~~~~  539 (606)
T 3t6q_A          470 NSLQTLGRLEILVLSFCD-LSSID------QHAFTSLKMMNHVDLSHN-RLTSSSIEALSHLKGI-YLNLASNH-ISIIL  539 (606)
T ss_dssp             CGGGGCTTCCEEECTTSC-CCEEC------TTTTTTCTTCCEEECCSS-CCCGGGGGGGTTCCSC-EEECCSSC-CCCCC
T ss_pred             hhhccCCCccEEECCCCc-cCccC------hhhhccccCCCEEECCCC-ccCcCChhHhCccccc-EEECcCCc-ccccC
Confidence            346789999999999884 33332      135778899999999887 56555444   78888 99999985 55554


Q ss_pred             C-CCCCCCCeeEEEe
Q 039808          314 L-GSNLKHSVMEIKA  327 (358)
Q Consensus       314 ~-~~~~~~~L~~~~~  327 (358)
                      . .+..+++|+.+.-
T Consensus       540 ~~~~~~l~~L~~L~l  554 (606)
T 3t6q_A          540 PSLLPILSQQRTINL  554 (606)
T ss_dssp             GGGHHHHHTSSEEEC
T ss_pred             HhhcccCCCCCEEeC
Confidence            3 3455667777653

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=99.70  E-value=3.8e-16  Score=146.20  Aligned_cols=261  Identities=14%  Similarity=0.109  Sum_probs=172.1

Q ss_pred             cccceeccCCC---CccCCchhhcCccccEEEeeecCCCcceecccchhhhhhcCCCCCceEEEEccCchhHHHHH-hhh
Q 039808            4 SCNVEYVKMPP---QLISSGIISRLHALKTLSIVVYPGDKRWYKDVKSVVLEVCNLTELSSLCFHFPEIKLLELFL-QRC   79 (358)
Q Consensus         4 l~~L~~l~L~~---~~ip~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~~~~~~l~~l~~~~-~~~   79 (358)
                      +.+|++|+++.   ..+++..++++.+|++|++++ +.+..      ..+..+.++++|++|++..+.+..++..+ +  
T Consensus        68 l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~-n~l~~------~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~--  138 (390)
T 3o6n_A           68 FRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGF-NAIRY------LPPHVFQNVPLLTVLVLERNDLSSLPRGIFH--  138 (390)
T ss_dssp             CCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCS-SCCCC------CCTTTTTTCTTCCEEECCSSCCCCCCTTTTT--
T ss_pred             cccCcEEECCCCcccccChhhccCCCCcCEEECCC-CCCCc------CCHHHhcCCCCCCEEECCCCccCcCCHHHhc--
Confidence            57899999987   456766678999999999998 33321      11345788999999999877777665321 2  


Q ss_pred             ccccccccceEEEEEeCccccccccCCcccccccccCCceEEeeCCC--CChHHHHhhccCccEEEeccCCCCCccCc--
Q 039808           80 VAWNAQCLTEFRIVVGHDIKNIVSRVPDAVAFDYNKQGKCLRFINGE--NIPDAVLQILACCTAFYLDNHLHINSLSD--  155 (358)
Q Consensus        80 ~~~~~~~L~~l~i~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~--~~~~~~~~~l~~L~~L~l~~~~~~~~l~~--  155 (358)
                         .+++|+.+.+.   .+  .+...+. ..+..+++|+.|.+.++.  .++   ...+++++.+++.++ .+..++.  
T Consensus       139 ---~l~~L~~L~L~---~n--~l~~~~~-~~~~~l~~L~~L~l~~n~l~~~~---~~~l~~L~~L~l~~n-~l~~~~~~~  205 (390)
T 3o6n_A          139 ---NTPKLTTLSMS---NN--NLERIED-DTFQATTSLQNLQLSSNRLTHVD---LSLIPSLFHANVSYN-LLSTLAIPI  205 (390)
T ss_dssp             ---TCTTCCEEECC---SS--CCCBCCT-TTTSSCTTCCEEECCSSCCSBCC---GGGCTTCSEEECCSS-CCSEEECCS
T ss_pred             ---CCCCCcEEECC---CC--ccCccCh-hhccCCCCCCEEECCCCcCCccc---cccccccceeecccc-cccccCCCC
Confidence               46677777752   11  0122221 245566788888887764  222   234556666665554 2222110  


Q ss_pred             --------------ccccCccCCcEEEeecCCCceEecCCCCccccCCCccceeecccccccccccccccCCCcCccccE
Q 039808          156 --------------FGVRSINGLKFCIISECPKIETVVDGKELTTVIFPSLENLSIHHLWNLTHICEGSVPNGSFARLRI  221 (358)
Q Consensus       156 --------------~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~  221 (358)
                                    .+...+++|+.|++++|... ..     .....+++|++|+++++.-....   +...+.+++|++
T Consensus       206 ~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~l~-~~-----~~l~~l~~L~~L~Ls~n~l~~~~---~~~~~~l~~L~~  276 (390)
T 3o6n_A          206 AVEELDASHNSINVVRGPVNVELTILKLQHNNLT-DT-----AWLLNYPGLVEVDLSYNELEKIM---YHPFVKMQRLER  276 (390)
T ss_dssp             SCSEEECCSSCCCEEECCCCSSCCEEECCSSCCC-CC-----GGGGGCTTCSEEECCSSCCCEEE---SGGGTTCSSCCE
T ss_pred             cceEEECCCCeeeeccccccccccEEECCCCCCc-cc-----HHHcCCCCccEEECCCCcCCCcC---hhHccccccCCE
Confidence                          01123456777777766332 21     12567899999999987533221   233457899999


Q ss_pred             EeEecCCCccccCchhhhccCCCccEEEEecCCccccccccccccccccccCCCcceeccccccccccccCCCCCCccEE
Q 039808          222 LSVHACPKLKFVFSSFMIHFMSNLEDLTVEDCPAIEEIISEGEIIDSGCTALPRLKKLTLHYLPGLVTIWSSAWPSLEYV  301 (358)
Q Consensus       222 L~l~~c~~l~~l~~~~~l~~l~~L~~L~i~~c~~l~~i~~~~~~~~~~~~~l~~L~~L~l~~c~~L~~~~~~~~~~L~~L  301 (358)
                      |+++++ +++.++  .....+++|+.|++++| .+..++       .....+++|+.|+++++ .++.++...+++|++|
T Consensus       277 L~L~~n-~l~~~~--~~~~~l~~L~~L~L~~n-~l~~~~-------~~~~~l~~L~~L~L~~N-~i~~~~~~~~~~L~~L  344 (390)
T 3o6n_A          277 LYISNN-RLVALN--LYGQPIPTLKVLDLSHN-HLLHVE-------RNQPQFDRLENLYLDHN-SIVTLKLSTHHTLKNL  344 (390)
T ss_dssp             EECCSS-CCCEEE--CSSSCCTTCCEEECCSS-CCCCCG-------GGHHHHTTCSEEECCSS-CCCCCCCCTTCCCSEE
T ss_pred             EECCCC-cCcccC--cccCCCCCCCEEECCCC-cceecC-------ccccccCcCCEEECCCC-ccceeCchhhccCCEE
Confidence            999997 466552  23467899999999998 565655       34677899999999887 5777765589999999


Q ss_pred             eeeCCc
Q 039808          302 SFYDCP  307 (358)
Q Consensus       302 ~i~~C~  307 (358)
                      ++++++
T Consensus       345 ~l~~N~  350 (390)
T 3o6n_A          345 TLSHND  350 (390)
T ss_dssp             ECCSSC
T ss_pred             EcCCCC
Confidence            999975

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=99.69  E-value=3.2e-16  Score=152.20  Aligned_cols=134  Identities=19%  Similarity=0.186  Sum_probs=79.0

Q ss_pred             CCCccceeecccccccccccccccCCCcCccccEEeEecCCCccccCc-hhhhccCCCccEEEEecCCccccccccc---
Q 039808          188 IFPSLENLSIHHLWNLTHICEGSVPNGSFARLRILSVHACPKLKFVFS-SFMIHFMSNLEDLTVEDCPAIEEIISEG---  263 (358)
Q Consensus       188 ~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~-~~~l~~l~~L~~L~i~~c~~l~~i~~~~---  263 (358)
                      .+++|++|+++++.-...+   +...+.+++|++|++++|. ++.+.. +..++.+++|+.|+++++.-...++...   
T Consensus       322 ~l~~L~~L~Ls~n~l~~~~---~~~~~~l~~L~~L~L~~N~-l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~~  397 (520)
T 2z7x_B          322 KISPFLHLDFSNNLLTDTV---FENCGHLTELETLILQMNQ-LKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSW  397 (520)
T ss_dssp             SCCCCCEEECCSSCCCTTT---TTTCCCCSSCCEEECCSSC-CCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGCSCCC
T ss_pred             hCCcccEEEeECCccChhh---hhhhccCCCCCEEEccCCc-cCccccchHHHhhCCCCCEEECCCCcCCcccccchhcc
Confidence            4566777777665433222   2223456667777776653 332211 1234566666666666653322132110   


Q ss_pred             --c---------cc-ccccccC-CCcceeccccccccccccCC--CCCCccEEeeeCCcCCCccCCC-CCCCCCeeEEEe
Q 039808          264 --E---------II-DSGCTAL-PRLKKLTLHYLPGLVTIWSS--AWPSLEYVSFYDCPRLKNIGLG-SNLKHSVMEIKA  327 (358)
Q Consensus       264 --~---------~~-~~~~~~l-~~L~~L~l~~c~~L~~~~~~--~~~~L~~L~i~~C~~L~~lP~~-~~~~~~L~~~~~  327 (358)
                        .         .. ......+ ++|+.|+++++ .++.+|..  .+++|++|++++| +++.+|.. +..+++|+.++.
T Consensus       398 l~~L~~L~Ls~N~l~~~~~~~l~~~L~~L~Ls~N-~l~~ip~~~~~l~~L~~L~L~~N-~l~~l~~~~~~~l~~L~~L~l  475 (520)
T 2z7x_B          398 TKSLLSLNMSSNILTDTIFRCLPPRIKVLDLHSN-KIKSIPKQVVKLEALQELNVASN-QLKSVPDGIFDRLTSLQKIWL  475 (520)
T ss_dssp             CTTCCEEECCSSCCCGGGGGSCCTTCCEEECCSS-CCCCCCGGGGGCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEEC
T ss_pred             CccCCEEECcCCCCCcchhhhhcccCCEEECCCC-cccccchhhhcCCCCCEEECCCC-cCCccCHHHhccCCcccEEEC
Confidence              0         00 0011122 68888888776 67777766  8899999999998 58899987 677888988864

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=99.69  E-value=1.9e-16  Score=154.69  Aligned_cols=54  Identities=26%  Similarity=0.270  Sum_probs=35.6

Q ss_pred             cCCCcceeccccccccccccCC-CCCCccEEeeeCCcCCCccCCC-CCCCCCeeEEEe
Q 039808          272 ALPRLKKLTLHYLPGLVTIWSS-AWPSLEYVSFYDCPRLKNIGLG-SNLKHSVMEIKA  327 (358)
Q Consensus       272 ~l~~L~~L~l~~c~~L~~~~~~-~~~~L~~L~i~~C~~L~~lP~~-~~~~~~L~~~~~  327 (358)
                      .+++|+.|+++++ .++.+|.. .+++|+.|++++| +++.+|.. +..+++|+.++.
T Consensus       449 ~l~~L~~L~Ls~N-~l~~ip~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~l  504 (549)
T 2z81_A          449 FLPRLQELYISRN-KLKTLPDASLFPVLLVMKISRN-QLKSVPDGIFDRLTSLQKIWL  504 (549)
T ss_dssp             CCTTCCEEECCSS-CCSSCCCGGGCTTCCEEECCSS-CCCCCCTTGGGGCTTCCEEEC
T ss_pred             cCChhcEEECCCC-ccCcCCCcccCccCCEEecCCC-ccCCcCHHHHhcCcccCEEEe
Confidence            5666777777665 56666655 6777788888776 46666544 556777777754

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=99.68  E-value=3.7e-16  Score=155.49  Aligned_cols=255  Identities=12%  Similarity=0.022  Sum_probs=154.8

Q ss_pred             hhhhhcCCCCCceEEEEccCchh------------------HHHHHhhhccccccccceEEEEEeCccccccccCCcccc
Q 039808           49 VVLEVCNLTELSSLCFHFPEIKL------------------LELFLQRCVAWNAQCLTEFRIVVGHDIKNIVSRVPDAVA  110 (358)
Q Consensus        49 ~~~~l~~l~~L~~L~~~~~~l~~------------------l~~~~~~~~~~~~~~L~~l~i~~~~~~~~~~~~~~~~~~  110 (358)
                      ++..++++++|++|++..+.++.                  +|..++   .-.+++|+.+.+......    ...|.  .
T Consensus       198 ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~---~~~l~~L~~L~L~~n~l~----~~~p~--~  268 (636)
T 4eco_A          198 VSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLK---WDNLKDLTDVEVYNCPNL----TKLPT--F  268 (636)
T ss_dssp             ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCC---GGGCTTCCEEEEECCTTC----SSCCT--T
T ss_pred             CCHHHhcccCCCEEECcCCccccccccccccccccchhcccCchhhh---hcccCCCCEEEecCCcCC----ccChH--H
Confidence            56779999999999999888776                  553222   004677887777322111    34453  6


Q ss_pred             cccccCCceEEeeCCC-----CChHHHHhh-----ccCccEEEeccCCCCCccCc-ccccCccCCcEEEeecCCCceEec
Q 039808          111 FDYNKQGKCLRFINGE-----NIPDAVLQI-----LACCTAFYLDNHLHINSLSD-FGVRSINGLKFCIISECPKIETVV  179 (358)
Q Consensus       111 l~~~~~L~~L~l~~~~-----~~~~~~~~~-----l~~L~~L~l~~~~~~~~l~~-~~l~~l~~L~~L~l~~~~~~~~~~  179 (358)
                      +..+++|+.|.+.++.     .+|..+...     +++|+.|++.++ .+..++. ..++++++|++|++++|.....++
T Consensus       269 l~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n-~l~~ip~~~~l~~l~~L~~L~L~~N~l~g~ip  347 (636)
T 4eco_A          269 LKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYN-NLKTFPVETSLQKMKKLGMLECLYNQLEGKLP  347 (636)
T ss_dssp             TTTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSS-CCSSCCCHHHHTTCTTCCEEECCSCCCEEECC
T ss_pred             HhcCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCC-cCCccCchhhhccCCCCCEEeCcCCcCccchh
Confidence            7777899999998875     244444332     489999999998 6667765 148899999999999886544664


Q ss_pred             CCCCccccCCCccceeecccccccccccccccCCCcCcc-ccEEeEecCCCccccCchhhhcc--CCCccEEEEecCCcc
Q 039808          180 DGKELTTVIFPSLENLSIHHLWNLTHICEGSVPNGSFAR-LRILSVHACPKLKFVFSSFMIHF--MSNLEDLTVEDCPAI  256 (358)
Q Consensus       180 ~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~-L~~L~l~~c~~l~~l~~~~~l~~--l~~L~~L~i~~c~~l  256 (358)
                       .    ...+++|++|.++++.- ..+   +...+.+++ |++|+++++. ++.++.  .+..  +++|+.|+++++.-.
T Consensus       348 -~----~~~l~~L~~L~L~~N~l-~~l---p~~l~~l~~~L~~L~Ls~N~-l~~lp~--~~~~~~l~~L~~L~Ls~N~l~  415 (636)
T 4eco_A          348 -A----FGSEIKLASLNLAYNQI-TEI---PANFCGFTEQVENLSFAHNK-LKYIPN--IFDAKSVSVMSAIDFSYNEIG  415 (636)
T ss_dssp             -C----CEEEEEESEEECCSSEE-EEC---CTTSEEECTTCCEEECCSSC-CSSCCS--CCCTTCSSCEEEEECCSSCTT
T ss_pred             -h----hCCCCCCCEEECCCCcc-ccc---cHhhhhhcccCcEEEccCCc-Ccccch--hhhhcccCccCEEECcCCcCC
Confidence             2    45567777777766532 233   222344556 6667666653 333321  1222  235556655554322


Q ss_pred             cccccc--------------------c---ccccc-ccccCCCcceeccccccccccccCC---CCC-------CccEEe
Q 039808          257 EEIISE--------------------G---EIIDS-GCTALPRLKKLTLHYLPGLVTIWSS---AWP-------SLEYVS  302 (358)
Q Consensus       257 ~~i~~~--------------------~---~~~~~-~~~~l~~L~~L~l~~c~~L~~~~~~---~~~-------~L~~L~  302 (358)
                      ..++..                    .   ..... ....+++|+.|+++++ .++.++..   ...       +|++|+
T Consensus       416 ~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~~~l~~L~~L~Ls~N-~l~~i~~~~~~~~~~~~~~l~~L~~L~  494 (636)
T 4eco_A          416 SVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGN-MLTEIPKNSLKDENENFKNTYLLTSID  494 (636)
T ss_dssp             TTTTCSSCTTCSSCCCCCCEEEEECCSSCCCSCCTHHHHTTCCCSEEECCSS-CCSBCCSSSSEETTEECTTGGGCCEEE
T ss_pred             CcchhhhcccccccccCCCCCEEECcCCccCcCCHHHHccCCCCCEEECCCC-CCCCcCHHHhccccccccccCCccEEE
Confidence            211100                    0   00001 1234677888888665 56666655   122       788888


Q ss_pred             eeCCcCCCccCCCCC--CCCCeeEEEe
Q 039808          303 FYDCPRLKNIGLGSN--LKHSVMEIKA  327 (358)
Q Consensus       303 i~~C~~L~~lP~~~~--~~~~L~~~~~  327 (358)
                      +++| +++.+|....  .+++|+.+.-
T Consensus       495 Ls~N-~l~~lp~~~~~~~l~~L~~L~L  520 (636)
T 4eco_A          495 LRFN-KLTKLSDDFRATTLPYLVGIDL  520 (636)
T ss_dssp             CCSS-CCCBCCGGGSTTTCTTCCEEEC
T ss_pred             CcCC-cCCccChhhhhccCCCcCEEEC
Confidence            8887 4667887765  6778887754

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=99.68  E-value=4.9e-16  Score=152.39  Aligned_cols=52  Identities=23%  Similarity=0.242  Sum_probs=43.4

Q ss_pred             CCcceeccccccccccccCC--CCCCccEEeeeCCcCCCccCCC-CCCCCCeeEEEe
Q 039808          274 PRLKKLTLHYLPGLVTIWSS--AWPSLEYVSFYDCPRLKNIGLG-SNLKHSVMEIKA  327 (358)
Q Consensus       274 ~~L~~L~l~~c~~L~~~~~~--~~~~L~~L~i~~C~~L~~lP~~-~~~~~~L~~~~~  327 (358)
                      ++|+.|+++++ .++.+|..  .+++|++|+++++ +++.+|.. ...+++|+.++.
T Consensus       450 ~~L~~L~L~~N-~l~~ip~~~~~l~~L~~L~L~~N-~l~~l~~~~~~~l~~L~~L~l  504 (562)
T 3a79_B          450 PKVKVLDLHNN-RIMSIPKDVTHLQALQELNVASN-QLKSVPDGVFDRLTSLQYIWL  504 (562)
T ss_dssp             TTCSEEECCSS-CCCCCCTTTTSSCCCSEEECCSS-CCCCCCTTSTTTCTTCCCEEC
T ss_pred             CcCCEEECCCC-cCcccChhhcCCCCCCEEECCCC-CCCCCCHHHHhcCCCCCEEEe
Confidence            68999999877 78888877  7899999999997 58899988 677888888764

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=99.67  E-value=4.7e-16  Score=153.78  Aligned_cols=58  Identities=10%  Similarity=0.021  Sum_probs=31.4

Q ss_pred             cccCCCcceeccccccccccccCC--CCCCccEEeeeCCcCCC-ccCCCCCCCCCeeEEEe
Q 039808          270 CTALPRLKKLTLHYLPGLVTIWSS--AWPSLEYVSFYDCPRLK-NIGLGSNLKHSVMEIKA  327 (358)
Q Consensus       270 ~~~l~~L~~L~l~~c~~L~~~~~~--~~~~L~~L~i~~C~~L~-~lP~~~~~~~~L~~~~~  327 (358)
                      +..+++|+.|++++|.-....+..  .+++|++|++++|.--. .+|.....+++|+.+..
T Consensus       420 ~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~L  480 (606)
T 3vq2_A          420 FLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDL  480 (606)
T ss_dssp             TTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEEC
T ss_pred             hhccccCCEEECcCCCCCccchhhhcCCCCCCEEECCCCcCCCcchHHhhccCCCCCEEEC
Confidence            445566666666555322222222  56667777776664333 25666666666666643

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=99.67  E-value=6.5e-16  Score=150.91  Aligned_cols=296  Identities=11%  Similarity=0.074  Sum_probs=153.4

Q ss_pred             ccceeccCCC---CccCCchhhcCccccEEEeeecCCCcceecccchhhhhhcCCCCCceEEEEccCchhHHHH-Hhhhc
Q 039808            5 CNVEYVKMPP---QLISSGIISRLHALKTLSIVVYPGDKRWYKDVKSVVLEVCNLTELSSLCFHFPEIKLLELF-LQRCV   80 (358)
Q Consensus         5 ~~L~~l~L~~---~~ip~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~~~~~~l~~l~~~-~~~~~   80 (358)
                      .+|++|+++.   +.+++..++++++|++|++++ +.+..      ..+..+.++++|++|+++.+.+..++.. ++   
T Consensus        26 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~-n~i~~------~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~---   95 (549)
T 2z81_A           26 AAMKSLDLSFNKITYIGHGDLRACANLQVLILKS-SRINT------IEGDAFYSLGSLEHLDLSDNHLSSLSSSWFG---   95 (549)
T ss_dssp             TTCCEEECCSSCCCEECSSTTSSCTTCCEEECTT-SCCCE------ECTTTTTTCTTCCEEECTTSCCCSCCHHHHT---
T ss_pred             CCccEEECcCCccCccChhhhhcCCcccEEECCC-CCcCc------cChhhccccccCCEEECCCCccCccCHHHhc---
Confidence            4677888876   334445567888888888887 33321      1134577777888887766666554432 33   


Q ss_pred             cccccccceEEEEEeCccccccccCCcccccccccCCceEEeeCCC---CChHHHHhhccCccEEEeccCCCCCccCccc
Q 039808           81 AWNAQCLTEFRIVVGHDIKNIVSRVPDAVAFDYNKQGKCLRFINGE---NIPDAVLQILACCTAFYLDNHLHINSLSDFG  157 (358)
Q Consensus        81 ~~~~~~L~~l~i~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~---~~~~~~~~~l~~L~~L~l~~~~~~~~l~~~~  157 (358)
                        .+++|+.+.+   ..+  .+...+....+..+++|+.|.+.++.   .++......+++|+.|++.++ .+.......
T Consensus        96 --~l~~L~~L~L---s~n--~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~  167 (549)
T 2z81_A           96 --PLSSLKYLNL---MGN--PYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKAL-SLRNYQSQS  167 (549)
T ss_dssp             --TCTTCCEEEC---TTC--CCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEET-TCCEECTTT
T ss_pred             --cCCCCcEEEC---CCC--cccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCC-cccccChhh
Confidence              4556666654   111  01111111245556667777776653   222233444667777777666 443322223


Q ss_pred             ccCcc------------------------CCcEEEeecCCCceEecCCCCccccCCCccceeecccccccc---------
Q 039808          158 VRSIN------------------------GLKFCIISECPKIETVVDGKELTTVIFPSLENLSIHHLWNLT---------  204 (358)
Q Consensus       158 l~~l~------------------------~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~---------  204 (358)
                      +++++                        +|++|++++|......... ......+++|++|.+.++.-..         
T Consensus       168 l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~-~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~  246 (549)
T 2z81_A          168 LKSIRDIHHLTLHLSESAFLLEIFADILSSVRYLELRDTNLARFQFSP-LPVDEVSSPMKKLAFRGSVLTDESFNELLKL  246 (549)
T ss_dssp             TTTCSEEEEEEEECSBSTTHHHHHHHSTTTBSEEEEESCBCTTCCCCC-CSSCCCCCCCCEEEEESCEEEHHHHHHHHGG
T ss_pred             hhccccCceEecccCcccccchhhHhhcccccEEEccCCccccccccc-cchhhhhhcccceeccccccchhHHHHHHHH
Confidence            44444                        4444444444221110000 0001223455555544332100         


Q ss_pred             --------cccc----------cc----cCCCc-----------------------------CccccEEeEecCCCcccc
Q 039808          205 --------HICE----------GS----VPNGS-----------------------------FARLRILSVHACPKLKFV  233 (358)
Q Consensus       205 --------~~~~----------~~----~~~~~-----------------------------~~~L~~L~l~~c~~l~~l  233 (358)
                              .+..          .+    .....                             +++|++|++.++. ++.+
T Consensus       247 ~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~l~~~~~~~~~L~~L~l~~n~-l~~i  325 (549)
T 2z81_A          247 LRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSK-VFLV  325 (549)
T ss_dssp             GGGCTTCCEEEEESCEEECCSCCCCCTTTCCCCCTTCCEEEEESCBCSCGGGSCCCCHHHHHSTTCCEEEEESSC-CCCC
T ss_pred             hhhhccccccccccccccccccccccchhhhhhhcccccccccccccchhhhcccchhhhhhcccceEEEeccCc-cccC
Confidence                    0000          00    00011                             2345555555542 3333


Q ss_pred             CchhhhccCCCccEEEEecCCccccccccccccccccccCCCcceeccccccccccccC--C---CCCCccEEeeeCCcC
Q 039808          234 FSSFMIHFMSNLEDLTVEDCPAIEEIISEGEIIDSGCTALPRLKKLTLHYLPGLVTIWS--S---AWPSLEYVSFYDCPR  308 (358)
Q Consensus       234 ~~~~~l~~l~~L~~L~i~~c~~l~~i~~~~~~~~~~~~~l~~L~~L~l~~c~~L~~~~~--~---~~~~L~~L~i~~C~~  308 (358)
                       |..+++.+++|+.|+++++.-...++..    ....+.+++|+.|+++++ .++.++.  .   .+++|++|++++| +
T Consensus       326 -p~~~~~~l~~L~~L~Ls~N~l~~~~~~~----~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~~~l~~L~~L~Ls~N-~  398 (549)
T 2z81_A          326 -PCSFSQHLKSLEFLDLSENLMVEEYLKN----SACKGAWPSLQTLVLSQN-HLRSMQKTGEILLTLKNLTSLDISRN-T  398 (549)
T ss_dssp             -CHHHHHHCTTCCEEECCSSCCCHHHHHH----HTCTTSSTTCCEEECTTS-CCCCHHHHHHHGGGCTTCCEEECTTC-C
T ss_pred             -CHHHHhcCccccEEEccCCccccccccc----hhhhhccccCcEEEccCC-cccccccchhhhhcCCCCCEEECCCC-C
Confidence             3334456888888888877544333200    012466788888888776 5665542  1   6788888888887 5


Q ss_pred             CCccCCCCCCCCCeeEEEe
Q 039808          309 LKNIGLGSNLKHSVMEIKA  327 (358)
Q Consensus       309 L~~lP~~~~~~~~L~~~~~  327 (358)
                      ++.+|.....+++|+.+..
T Consensus       399 l~~lp~~~~~~~~L~~L~L  417 (549)
T 2z81_A          399 FHPMPDSCQWPEKMRFLNL  417 (549)
T ss_dssp             CCCCCSCCCCCTTCCEEEC
T ss_pred             CccCChhhcccccccEEEC
Confidence            7778877766777777654

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.67  E-value=1.1e-15  Score=150.98  Aligned_cols=261  Identities=14%  Similarity=0.112  Sum_probs=172.6

Q ss_pred             cccceeccCCC---CccCCchhhcCccccEEEeeecCCCcceecccchhhhhhcCCCCCceEEEEccCchhHHHHH-hhh
Q 039808            4 SCNVEYVKMPP---QLISSGIISRLHALKTLSIVVYPGDKRWYKDVKSVVLEVCNLTELSSLCFHFPEIKLLELFL-QRC   79 (358)
Q Consensus         4 l~~L~~l~L~~---~~ip~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~~~~~~l~~l~~~~-~~~   79 (358)
                      +.+|++|+|+.   ..+++..++.+.+|++|++++ +.+..      ..+..++++++|++|++..+.+..++..+ +  
T Consensus        74 l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~-n~l~~------~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~--  144 (597)
T 3oja_B           74 FRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGF-NAIRY------LPPHVFQNVPLLTVLVLERNDLSSLPRGIFH--  144 (597)
T ss_dssp             CCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCS-SCCCC------CCTTTTTTCTTCCEEECCSSCCCCCCTTTTT--
T ss_pred             CCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCC-CcCCC------CCHHHHcCCCCCCEEEeeCCCCCCCCHHHhc--
Confidence            56899999987   446666678999999999998 33322      11345788999999999888777665421 2  


Q ss_pred             ccccccccceEEEEEeCccccccccCCcccccccccCCceEEeeCCC--CChHHHHhhccCccEEEeccCCCCCccCc--
Q 039808           80 VAWNAQCLTEFRIVVGHDIKNIVSRVPDAVAFDYNKQGKCLRFINGE--NIPDAVLQILACCTAFYLDNHLHINSLSD--  155 (358)
Q Consensus        80 ~~~~~~~L~~l~i~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~--~~~~~~~~~l~~L~~L~l~~~~~~~~l~~--  155 (358)
                         .+++|+.+.+.   .+  .+...+. ..+..++.|+.|.+.++.  +++   ...+++|+.|++.++ .+..++.  
T Consensus       145 ---~l~~L~~L~Ls---~N--~l~~~~~-~~~~~l~~L~~L~L~~N~l~~~~---~~~l~~L~~L~l~~n-~l~~l~~~~  211 (597)
T 3oja_B          145 ---NTPKLTTLSMS---NN--NLERIED-DTFQATTSLQNLQLSSNRLTHVD---LSLIPSLFHANVSYN-LLSTLAIPI  211 (597)
T ss_dssp             ---TCTTCCEEECC---SS--CCCBCCT-TTTTTCTTCCEEECTTSCCSBCC---GGGCTTCSEEECCSS-CCSEEECCT
T ss_pred             ---cCCCCCEEEee---CC--cCCCCCh-hhhhcCCcCcEEECcCCCCCCcC---hhhhhhhhhhhcccC-ccccccCCc
Confidence               46677777652   11  0122221 245666788888887764  222   234566666666555 3322110  


Q ss_pred             --------------ccccCccCCcEEEeecCCCceEecCCCCccccCCCccceeecccccccccccccccCCCcCccccE
Q 039808          156 --------------FGVRSINGLKFCIISECPKIETVVDGKELTTVIFPSLENLSIHHLWNLTHICEGSVPNGSFARLRI  221 (358)
Q Consensus       156 --------------~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~  221 (358)
                                    ......++|+.|++++|.... .     .....+++|++|+++++.-....   +..++.+++|+.
T Consensus       212 ~L~~L~ls~n~l~~~~~~~~~~L~~L~L~~n~l~~-~-----~~l~~l~~L~~L~Ls~N~l~~~~---~~~~~~l~~L~~  282 (597)
T 3oja_B          212 AVEELDASHNSINVVRGPVNVELTILKLQHNNLTD-T-----AWLLNYPGLVEVDLSYNELEKIM---YHPFVKMQRLER  282 (597)
T ss_dssp             TCSEEECCSSCCCEEECSCCSCCCEEECCSSCCCC-C-----GGGGGCTTCSEEECCSSCCCEEE---SGGGTTCSSCCE
T ss_pred             hhheeeccCCcccccccccCCCCCEEECCCCCCCC-C-----hhhccCCCCCEEECCCCccCCCC---HHHhcCccCCCE
Confidence                          001122456666666653221 1     12567899999999987543332   333567899999


Q ss_pred             EeEecCCCccccCchhhhccCCCccEEEEecCCccccccccccccccccccCCCcceeccccccccccccCCCCCCccEE
Q 039808          222 LSVHACPKLKFVFSSFMIHFMSNLEDLTVEDCPAIEEIISEGEIIDSGCTALPRLKKLTLHYLPGLVTIWSSAWPSLEYV  301 (358)
Q Consensus       222 L~l~~c~~l~~l~~~~~l~~l~~L~~L~i~~c~~l~~i~~~~~~~~~~~~~l~~L~~L~l~~c~~L~~~~~~~~~~L~~L  301 (358)
                      |+++++ .++.++  .....+++|+.|++++| .+..++       .....+++|+.|+++++ .+..++...+++|+.|
T Consensus       283 L~Ls~N-~l~~l~--~~~~~l~~L~~L~Ls~N-~l~~i~-------~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~L~~L  350 (597)
T 3oja_B          283 LYISNN-RLVALN--LYGQPIPTLKVLDLSHN-HLLHVE-------RNQPQFDRLENLYLDHN-SIVTLKLSTHHTLKNL  350 (597)
T ss_dssp             EECTTS-CCCEEE--CSSSCCTTCCEEECCSS-CCCCCG-------GGHHHHTTCSEEECCSS-CCCCCCCCTTCCCSEE
T ss_pred             EECCCC-CCCCCC--cccccCCCCcEEECCCC-CCCccC-------cccccCCCCCEEECCCC-CCCCcChhhcCCCCEE
Confidence            999997 466552  23467999999999997 444555       35678999999999887 5777765589999999


Q ss_pred             eeeCCc
Q 039808          302 SFYDCP  307 (358)
Q Consensus       302 ~i~~C~  307 (358)
                      ++++++
T Consensus       351 ~l~~N~  356 (597)
T 3oja_B          351 TLSHND  356 (597)
T ss_dssp             ECCSSC
T ss_pred             EeeCCC
Confidence            999986

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=99.67  E-value=1.6e-15  Score=149.91  Aligned_cols=57  Identities=16%  Similarity=-0.051  Sum_probs=42.0

Q ss_pred             ccccCCCcceecccccccccccc-CC--CCCCccEEeeeCCcCCCccCCCCCCCC-CeeEEEe
Q 039808          269 GCTALPRLKKLTLHYLPGLVTIW-SS--AWPSLEYVSFYDCPRLKNIGLGSNLKH-SVMEIKA  327 (358)
Q Consensus       269 ~~~~l~~L~~L~l~~c~~L~~~~-~~--~~~~L~~L~i~~C~~L~~lP~~~~~~~-~L~~~~~  327 (358)
                      .+..+++|+.|+++++ .++.+. ..  .+++|++|++++|. ++.+|..+..++ +|+.+..
T Consensus       492 ~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~l~~N~-l~~~p~~~~~l~~~L~~l~l  552 (606)
T 3vq2_A          492 VFDTLHRLQLLNMSHN-NLLFLDSSHYNQLYSLSTLDCSFNR-IETSKGILQHFPKSLAFFNL  552 (606)
T ss_dssp             TTTTCTTCCEEECCSS-CCSCEEGGGTTTCTTCCEEECTTSC-CCCEESCGGGSCTTCCEEEC
T ss_pred             hhcccccCCEEECCCC-cCCCcCHHHccCCCcCCEEECCCCc-CcccCHhHhhhcccCcEEEc
Confidence            4667788888888777 455553 33  68889999998885 888888876665 5887764

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=99.67  E-value=2.3e-16  Score=143.32  Aligned_cols=183  Identities=15%  Similarity=0.092  Sum_probs=97.4

Q ss_pred             cccccCCceEEeeCCC--CChHHHHhhccCccEEEeccCCCCC-ccCcccccCcc-CCcEEEeecCCCceEecCCCCccc
Q 039808          111 FDYNKQGKCLRFINGE--NIPDAVLQILACCTAFYLDNHLHIN-SLSDFGVRSIN-GLKFCIISECPKIETVVDGKELTT  186 (358)
Q Consensus       111 l~~~~~L~~L~l~~~~--~~~~~~~~~l~~L~~L~l~~~~~~~-~l~~~~l~~l~-~L~~L~l~~~~~~~~~~~~~~~~~  186 (358)
                      +..+++|+.|.+.++.  +..+.....+++|+.|++.++ .+. .++. .++.++ +|++|++++|.....++..    .
T Consensus       121 ~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N-~l~~~~p~-~l~~l~~~L~~L~L~~N~l~~~~~~~----~  194 (313)
T 1ogq_A          121 LSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGN-RISGAIPD-SYGSFSKLFTSMTISRNRLTGKIPPT----F  194 (313)
T ss_dssp             GGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSS-CCEEECCG-GGGCCCTTCCEEECCSSEEEEECCGG----G
T ss_pred             HhCCCCCCEEeCCCCccCCcCChHHhcCCCCCeEECcCC-cccCcCCH-HHhhhhhcCcEEECcCCeeeccCChH----H
Confidence            3344456666665543  122223344667777777666 443 3443 466665 7777777766433233222    2


Q ss_pred             cCCCccceeecccccccccccccccCCCcCccccEEeEecCCCccccCchhhhccCCCccEEEEecCCcccccccccccc
Q 039808          187 VIFPSLENLSIHHLWNLTHICEGSVPNGSFARLRILSVHACPKLKFVFSSFMIHFMSNLEDLTVEDCPAIEEIISEGEII  266 (358)
Q Consensus       187 ~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~l~~l~~L~~L~i~~c~~l~~i~~~~~~~  266 (358)
                      ..+. |++|+++++.-....   +...+.+++|+.|+++++. +...++  .+..+++|++|+++++.-...++      
T Consensus       195 ~~l~-L~~L~Ls~N~l~~~~---~~~~~~l~~L~~L~L~~N~-l~~~~~--~~~~l~~L~~L~Ls~N~l~~~~p------  261 (313)
T 1ogq_A          195 ANLN-LAFVDLSRNMLEGDA---SVLFGSDKNTQKIHLAKNS-LAFDLG--KVGLSKNLNGLDLRNNRIYGTLP------  261 (313)
T ss_dssp             GGCC-CSEEECCSSEEEECC---GGGCCTTSCCSEEECCSSE-ECCBGG--GCCCCTTCCEEECCSSCCEECCC------
T ss_pred             hCCc-ccEEECcCCcccCcC---CHHHhcCCCCCEEECCCCc-eeeecC--cccccCCCCEEECcCCcccCcCC------
Confidence            2333 777777665432221   2223456677777776653 332212  24556777777777664333333      


Q ss_pred             ccccccCCCcceeccccccccccccCC-CCCCccEEeeeCCcCCCccC
Q 039808          267 DSGCTALPRLKKLTLHYLPGLVTIWSS-AWPSLEYVSFYDCPRLKNIG  313 (358)
Q Consensus       267 ~~~~~~l~~L~~L~l~~c~~L~~~~~~-~~~~L~~L~i~~C~~L~~lP  313 (358)
                       ..+..+++|+.|+++++.--..+|.. .+++|+.+++.+++.+-..|
T Consensus       262 -~~l~~l~~L~~L~Ls~N~l~~~ip~~~~l~~L~~l~l~~N~~lc~~p  308 (313)
T 1ogq_A          262 -QGLTQLKFLHSLNVSFNNLCGEIPQGGNLQRFDVSAYANNKCLCGSP  308 (313)
T ss_dssp             -GGGGGCTTCCEEECCSSEEEEECCCSTTGGGSCGGGTCSSSEEESTT
T ss_pred             -hHHhcCcCCCEEECcCCcccccCCCCccccccChHHhcCCCCccCCC
Confidence             34556677777777666322244444 56677777777766555444

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=99.66  E-value=3.7e-15  Score=136.20  Aligned_cols=259  Identities=16%  Similarity=0.186  Sum_probs=134.5

Q ss_pred             CcccceeccCCC---CccCCchhhcCccccEEEeeecCCCcceecccchhhhhhcCCCCCceEEEEccCchhH-HHHHhh
Q 039808            3 LSCNVEYVKMPP---QLISSGIISRLHALKTLSIVVYPGDKRWYKDVKSVVLEVCNLTELSSLCFHFPEIKLL-ELFLQR   78 (358)
Q Consensus         3 ~l~~L~~l~L~~---~~ip~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~~~~~~l~~l-~~~~~~   78 (358)
                      +.++++.++++.   +.+|..+   .++|++|++++ +.+...      ....+.++++|++|++..+.+..+ +..++ 
T Consensus        29 c~c~l~~l~~~~~~l~~lp~~~---~~~l~~L~L~~-n~i~~~------~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~-   97 (330)
T 1xku_A           29 CQCHLRVVQCSDLGLEKVPKDL---PPDTALLDLQN-NKITEI------KDGDFKNLKNLHTLILINNKISKISPGAFA-   97 (330)
T ss_dssp             CEEETTEEECTTSCCCSCCCSC---CTTCCEEECCS-SCCCCB------CTTTTTTCTTCCEEECCSSCCCCBCTTTTT-
T ss_pred             CcCCCeEEEecCCCccccCccC---CCCCeEEECCC-CcCCEe------ChhhhccCCCCCEEECCCCcCCeeCHHHhc-
Confidence            456788888876   5577654   36899999998 444322      123588999999999977766654 32222 


Q ss_pred             hccccccccceEEEEEeCccccccccCCcccccccccCCceEEeeCCC--CChHHHHhhccCccEEEeccCCCCCc--cC
Q 039808           79 CVAWNAQCLTEFRIVVGHDIKNIVSRVPDAVAFDYNKQGKCLRFINGE--NIPDAVLQILACCTAFYLDNHLHINS--LS  154 (358)
Q Consensus        79 ~~~~~~~~L~~l~i~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~--~~~~~~~~~l~~L~~L~l~~~~~~~~--l~  154 (358)
                          .+++|+.+.+.   .+  .+..+|.  .+  .+.|+.|.+.++.  .++......+++|+.|++.++ .+..  ..
T Consensus        98 ----~l~~L~~L~Ls---~n--~l~~l~~--~~--~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~  163 (330)
T 1xku_A           98 ----PLVKLERLYLS---KN--QLKELPE--KM--PKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTN-PLKSSGIE  163 (330)
T ss_dssp             ----TCTTCCEEECC---SS--CCSBCCS--SC--CTTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSS-CCCGGGBC
T ss_pred             ----CCCCCCEEECC---CC--cCCccCh--hh--cccccEEECCCCcccccCHhHhcCCccccEEECCCC-cCCccCcC
Confidence                34556655541   11  0122222  11  1356666665543  333444455666666666655 3322  22


Q ss_pred             cccccCccCCcEEEeecCCCceEecCCCCccccCCCccceeecccccccccccccccCCCcCccccEEeEecCCCccccC
Q 039808          155 DFGVRSINGLKFCIISECPKIETVVDGKELTTVIFPSLENLSIHHLWNLTHICEGSVPNGSFARLRILSVHACPKLKFVF  234 (358)
Q Consensus       155 ~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~  234 (358)
                      ...+.++++|++|++++|. +..++..      .+++|++|+++++. ++.+.  +...+.+++|++|+++++. ++.+.
T Consensus       164 ~~~~~~l~~L~~L~l~~n~-l~~l~~~------~~~~L~~L~l~~n~-l~~~~--~~~~~~l~~L~~L~Ls~n~-l~~~~  232 (330)
T 1xku_A          164 NGAFQGMKKLSYIRIADTN-ITTIPQG------LPPSLTELHLDGNK-ITKVD--AASLKGLNNLAKLGLSFNS-ISAVD  232 (330)
T ss_dssp             TTGGGGCTTCCEEECCSSC-CCSCCSS------CCTTCSEEECTTSC-CCEEC--TGGGTTCTTCCEEECCSSC-CCEEC
T ss_pred             hhhccCCCCcCEEECCCCc-cccCCcc------ccccCCEEECCCCc-CCccC--HHHhcCCCCCCEEECCCCc-CceeC
Confidence            2245566666666666553 2222211      22566666665543 22211  1123345566666665543 33332


Q ss_pred             chhhhccCCCccEEEEecCCccccccccccccccccccCCCcceeccccccccccccCC---------CCCCccEEeeeC
Q 039808          235 SSFMIHFMSNLEDLTVEDCPAIEEIISEGEIIDSGCTALPRLKKLTLHYLPGLVTIWSS---------AWPSLEYVSFYD  305 (358)
Q Consensus       235 ~~~~l~~l~~L~~L~i~~c~~l~~i~~~~~~~~~~~~~l~~L~~L~l~~c~~L~~~~~~---------~~~~L~~L~i~~  305 (358)
                      + ..+..+++|+.|+++++ .+..++       ..+..+++|+.|+++++ .++.++..         ..++|+.+++.+
T Consensus       233 ~-~~~~~l~~L~~L~L~~N-~l~~lp-------~~l~~l~~L~~L~l~~N-~i~~~~~~~f~~~~~~~~~~~l~~l~l~~  302 (330)
T 1xku_A          233 N-GSLANTPHLRELHLNNN-KLVKVP-------GGLADHKYIQVVYLHNN-NISAIGSNDFCPPGYNTKKASYSGVSLFS  302 (330)
T ss_dssp             T-TTGGGSTTCCEEECCSS-CCSSCC-------TTTTTCSSCCEEECCSS-CCCCCCTTSSSCSSCCTTSCCCSEEECCS
T ss_pred             h-hhccCCCCCCEEECCCC-cCccCC-------hhhccCCCcCEEECCCC-cCCccChhhcCCcccccccccccceEeec
Confidence            2 23445566666666655 333443       23445566666666544 35544433         124555566655


Q ss_pred             Cc
Q 039808          306 CP  307 (358)
Q Consensus       306 C~  307 (358)
                      +|
T Consensus       303 N~  304 (330)
T 1xku_A          303 NP  304 (330)
T ss_dssp             SS
T ss_pred             Cc
Confidence            54

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=99.66  E-value=6.1e-16  Score=151.68  Aligned_cols=103  Identities=20%  Similarity=0.151  Sum_probs=65.5

Q ss_pred             CcCccccEEeEecCCCccccCchhhhccCCCccEEEEecCCcc-ccccccccccccccccCCCcceeccccccccccccC
Q 039808          214 GSFARLRILSVHACPKLKFVFSSFMIHFMSNLEDLTVEDCPAI-EEIISEGEIIDSGCTALPRLKKLTLHYLPGLVTIWS  292 (358)
Q Consensus       214 ~~~~~L~~L~l~~c~~l~~l~~~~~l~~l~~L~~L~i~~c~~l-~~i~~~~~~~~~~~~~l~~L~~L~l~~c~~L~~~~~  292 (358)
                      +.+++|++|++++|. +....+ ..+..+++|+.|++++|.-. ..++       ..+..+++|+.|++++| .++.+..
T Consensus       418 ~~l~~L~~L~l~~n~-l~~~~~-~~~~~l~~L~~L~l~~n~l~~~~~p-------~~~~~l~~L~~L~l~~n-~l~~~~~  487 (570)
T 2z63_A          418 LSLRNLIYLDISHTH-TRVAFN-GIFNGLSSLEVLKMAGNSFQENFLP-------DIFTELRNLTFLDLSQC-QLEQLSP  487 (570)
T ss_dssp             TTCTTCCEEECTTSC-CEECCT-TTTTTCTTCCEEECTTCEEGGGEEC-------SCCTTCTTCCEEECTTS-CCCEECT
T ss_pred             hcCCCCCEEeCcCCc-ccccch-hhhhcCCcCcEEECcCCcCccccch-------hhhhcccCCCEEECCCC-ccccCCh
Confidence            345566666666553 222222 23455666666666665432 1232       35677889999999877 5666633


Q ss_pred             -C--CCCCccEEeeeCCcCCCccCCC-CCCCCCeeEEEe
Q 039808          293 -S--AWPSLEYVSFYDCPRLKNIGLG-SNLKHSVMEIKA  327 (358)
Q Consensus       293 -~--~~~~L~~L~i~~C~~L~~lP~~-~~~~~~L~~~~~  327 (358)
                       .  .+++|++|++++| +++.+|.. +..+++|+.++.
T Consensus       488 ~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l  525 (570)
T 2z63_A          488 TAFNSLSSLQVLNMASN-QLKSVPDGIFDRLTSLQKIWL  525 (570)
T ss_dssp             TTTTTCTTCCEEECCSS-CCSCCCTTTTTTCTTCCEEEC
T ss_pred             hhhhcccCCCEEeCCCC-cCCCCCHHHhhcccCCcEEEe
Confidence             3  7899999999998 47777654 567888888864

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=99.66  E-value=3.4e-15  Score=144.95  Aligned_cols=123  Identities=13%  Similarity=0.012  Sum_probs=74.3

Q ss_pred             ccceeccCCC---CccCCchhhcCccccEEEeeecCCCcceecccchhhhhhcCCCCCceEEEEccCchhHHHHHhhhcc
Q 039808            5 CNVEYVKMPP---QLISSGIISRLHALKTLSIVVYPGDKRWYKDVKSVVLEVCNLTELSSLCFHFPEIKLLELFLQRCVA   81 (358)
Q Consensus         5 ~~L~~l~L~~---~~ip~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~~~~~~l~~l~~~~~~~~~   81 (358)
                      .+|++|+++.   ..++++.++++++|++|++++ +.+..      ..+..++++++|++|++..+.++.+|..      
T Consensus        21 ~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~-n~l~~------~~~~~~~~l~~L~~L~Ls~N~l~~lp~~------   87 (520)
T 2z7x_B           21 QKTTILNISQNYISELWTSDILSLSKLRILIISH-NRIQY------LDISVFKFNQELEYLDLSHNKLVKISCH------   87 (520)
T ss_dssp             TTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCS-SCCCE------EEGGGGTTCTTCCEEECCSSCCCEEECC------
T ss_pred             ccccEEECCCCcccccChhhccccccccEEecCC-CccCC------cChHHhhcccCCCEEecCCCceeecCcc------
Confidence            5678888877   335555577888888888887 33321      1245678888888888877777766531      


Q ss_pred             ccccccceEEEEEeCccccccccCCcccccccccCCceEEeeCCCCChHHHHhhccCc--cEEEeccC
Q 039808           82 WNAQCLTEFRIVVGHDIKNIVSRVPDAVAFDYNKQGKCLRFINGENIPDAVLQILACC--TAFYLDNH  147 (358)
Q Consensus        82 ~~~~~L~~l~i~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~L--~~L~l~~~  147 (358)
                       .+++|+.+.+.   .+  .+...+....+..+++|+.|.+.++.- .......++++  +.|++.++
T Consensus        88 -~l~~L~~L~L~---~N--~l~~~~~p~~~~~l~~L~~L~L~~n~l-~~~~~~~l~~L~L~~L~l~~n  148 (520)
T 2z7x_B           88 -PTVNLKHLDLS---FN--AFDALPICKEFGNMSQLKFLGLSTTHL-EKSSVLPIAHLNISKVLLVLG  148 (520)
T ss_dssp             -CCCCCSEEECC---SS--CCSSCCCCGGGGGCTTCCEEEEEESSC-CGGGGGGGTTSCEEEEEEEEC
T ss_pred             -ccCCccEEecc---CC--ccccccchhhhccCCcceEEEecCccc-chhhccccccceeeEEEeecc
Confidence             45667766652   11  012211113566667778888776542 22233445666  77777665

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=99.65  E-value=4.6e-15  Score=145.45  Aligned_cols=106  Identities=20%  Similarity=0.219  Sum_probs=63.6

Q ss_pred             CcCccccEEeEecCCCccccCc-hhhhccCCCccEEEEecCCccccccccccccccccccCCCcceeccccccccccccC
Q 039808          214 GSFARLRILSVHACPKLKFVFS-SFMIHFMSNLEDLTVEDCPAIEEIISEGEIIDSGCTALPRLKKLTLHYLPGLVTIWS  292 (358)
Q Consensus       214 ~~~~~L~~L~l~~c~~l~~l~~-~~~l~~l~~L~~L~i~~c~~l~~i~~~~~~~~~~~~~l~~L~~L~l~~c~~L~~~~~  292 (358)
                      +.+++|++|+++++ +++.+.. +..++.+++|+.|+++++.--..++.      .....+++|+.|+++++. ++....
T Consensus       374 ~~l~~L~~L~L~~N-~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~------~~~~~l~~L~~L~l~~n~-l~~~~~  445 (562)
T 3a79_B          374 STLKRLQTLILQRN-GLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYD------RTCAWAESILVLNLSSNM-LTGSVF  445 (562)
T ss_dssp             CSCSSCCEEECCSS-CCCBTTHHHHTTTTCTTCCEEECTTSCCBSCCSS------CCCCCCTTCCEEECCSSC-CCGGGG
T ss_pred             cccCCCCEEECCCC-CcCCcccchhhhcCCCCCCEEECCCCcCCCccCh------hhhcCcccCCEEECCCCC-CCcchh
Confidence            34556666666554 3333221 12245566666666665532221320      124566788888887763 432222


Q ss_pred             CCC-CCccEEeeeCCcCCCccCCCCCCCCCeeEEEec
Q 039808          293 SAW-PSLEYVSFYDCPRLKNIGLGSNLKHSVMEIKAE  328 (358)
Q Consensus       293 ~~~-~~L~~L~i~~C~~L~~lP~~~~~~~~L~~~~~~  328 (358)
                      ..+ ++|++|++++| +++.+|.+...+++|+.++-.
T Consensus       446 ~~l~~~L~~L~L~~N-~l~~ip~~~~~l~~L~~L~L~  481 (562)
T 3a79_B          446 RCLPPKVKVLDLHNN-RIMSIPKDVTHLQALQELNVA  481 (562)
T ss_dssp             SSCCTTCSEEECCSS-CCCCCCTTTTSSCCCSEEECC
T ss_pred             hhhcCcCCEEECCCC-cCcccChhhcCCCCCCEEECC
Confidence            233 69999999998 688999988888899988653

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=99.65  E-value=6.4e-16  Score=157.63  Aligned_cols=302  Identities=11%  Similarity=0.035  Sum_probs=180.1

Q ss_pred             CcccceeccCCC----CccCCchhhcCccccEEEeeecCCCcc--eecccchhhhhhcCCCCCceEEEEccCchhHHH--
Q 039808            3 LSCNVEYVKMPP----QLISSGIISRLHALKTLSIVVYPGDKR--WYKDVKSVVLEVCNLTELSSLCFHFPEIKLLEL--   74 (358)
Q Consensus         3 ~l~~L~~l~L~~----~~ip~~~i~~L~~L~~L~l~~~~~~~~--~~~~~~~~~~~l~~l~~L~~L~~~~~~l~~l~~--   74 (358)
                      .+.+|++|+|+.    ..+|.. ++++++|++|+++++..+..  .+.........+..+++|+.|++..+.+..+|.  
T Consensus       489 ~L~~L~~L~Ls~N~l~~~iP~~-l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~~ip~~~  567 (876)
T 4ecn_A          489 NLKDLTDVELYNCPNMTQLPDF-LYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEEFPASA  567 (876)
T ss_dssp             GCTTCCEEEEESCTTCCSCCGG-GGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCCBCCCHH
T ss_pred             cCCCCCEEECcCCCCCccChHH-HhCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCCccCChh
Confidence            578899999986    456755 68999999999998221431  111111111133455688888887777776665  


Q ss_pred             HHhhhccccccccceEEEEEeCccccccccCCcccccccccCCceEEeeCCC--CChHHHHhhccC-ccEEEeccCCCCC
Q 039808           75 FLQRCVAWNAQCLTEFRIVVGHDIKNIVSRVPDAVAFDYNKQGKCLRFINGE--NIPDAVLQILAC-CTAFYLDNHLHIN  151 (358)
Q Consensus        75 ~~~~~~~~~~~~L~~l~i~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~--~~~~~~~~~l~~-L~~L~l~~~~~~~  151 (358)
                      .++     .+++|+.+.+   ..+  .+..+|   .+..+++|+.|.+.++.  .++.+ ...+++ |+.|++.++ .+.
T Consensus       568 ~l~-----~L~~L~~L~L---s~N--~l~~lp---~~~~L~~L~~L~Ls~N~l~~lp~~-l~~l~~~L~~L~Ls~N-~L~  632 (876)
T 4ecn_A          568 SLQ-----KMVKLGLLDC---VHN--KVRHLE---AFGTNVKLTDLKLDYNQIEEIPED-FCAFTDQVEGLGFSHN-KLK  632 (876)
T ss_dssp             HHT-----TCTTCCEEEC---TTS--CCCBCC---CCCTTSEESEEECCSSCCSCCCTT-SCEECTTCCEEECCSS-CCC
T ss_pred             hhh-----cCCCCCEEEC---CCC--Ccccch---hhcCCCcceEEECcCCccccchHH-HhhccccCCEEECcCC-CCC
Confidence            444     4666776665   221  112333   44555567777776653  33333 233555 777777777 455


Q ss_pred             ccCcccccCcc--CCcEEEeecCCCceEecCCC-------------------------CccccCCCccceeecccccccc
Q 039808          152 SLSDFGVRSIN--GLKFCIISECPKIETVVDGK-------------------------ELTTVIFPSLENLSIHHLWNLT  204 (358)
Q Consensus       152 ~l~~~~l~~l~--~L~~L~l~~~~~~~~~~~~~-------------------------~~~~~~l~~L~~L~l~~~~~l~  204 (358)
                      .++. .+..+.  +|+.|++++|.....++...                         ......+++|+.|+++++. +.
T Consensus       633 ~lp~-~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~L~~lp~~~~~~l~~L~~L~Ls~N~-L~  710 (876)
T 4ecn_A          633 YIPN-IFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNNL-MT  710 (876)
T ss_dssp             SCCS-CCCTTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSSCCCSCCHHHHHTTCCCSEEECCSCC-CS
T ss_pred             cCch-hhhccccCCCCEEECcCCcCCCccccchhhhccccCCCcCEEEccCCcCCccCHHHHccCCCCCEEECCCCc-CC
Confidence            5553 233332  36666666654322111000                         0001235677777776652 33


Q ss_pred             cccccccC-----CCcCccccEEeEecCCCccccCchhhh-ccCCCccEEEEecCCccccccccccccccccccCCCcce
Q 039808          205 HICEGSVP-----NGSFARLRILSVHACPKLKFVFSSFMI-HFMSNLEDLTVEDCPAIEEIISEGEIIDSGCTALPRLKK  278 (358)
Q Consensus       205 ~~~~~~~~-----~~~~~~L~~L~l~~c~~l~~l~~~~~l-~~l~~L~~L~i~~c~~l~~i~~~~~~~~~~~~~l~~L~~  278 (358)
                      .++.....     .+.+++|+.|++++| +++.+ |..+. ..+++|+.|+++++ .+..++       ..+..+++|+.
T Consensus       711 ~ip~~~~~~~~~~l~nl~~L~~L~Ls~N-~L~~l-p~~l~~~~l~~L~~L~Ls~N-~L~~lp-------~~l~~L~~L~~  780 (876)
T 4ecn_A          711 SIPENSLKPKDGNYKNTYLLTTIDLRFN-KLTSL-SDDFRATTLPYLSNMDVSYN-CFSSFP-------TQPLNSSQLKA  780 (876)
T ss_dssp             CCCTTSSSCTTSCCTTGGGCCEEECCSS-CCCCC-CGGGSTTTCTTCCEEECCSS-CCSSCC-------CGGGGCTTCCE
T ss_pred             ccChHHhccccccccccCCccEEECCCC-CCccc-hHHhhhccCCCcCEEEeCCC-CCCccc-------hhhhcCCCCCE
Confidence            33221111     112348999999887 46655 32222 38899999999987 444455       45778999999


Q ss_pred             ecccc------ccccccccCC--CCCCccEEeeeCCcCCCccCCCCCCCCCeeEEEecccccccc
Q 039808          279 LTLHY------LPGLVTIWSS--AWPSLEYVSFYDCPRLKNIGLGSNLKHSVMEIKAEKSWWDDL  335 (358)
Q Consensus       279 L~l~~------c~~L~~~~~~--~~~~L~~L~i~~C~~L~~lP~~~~~~~~L~~~~~~~~~~~~l  335 (358)
                      |++++      +.-...+|..  .+++|+.|++++|. ++.+|....  ++|+.++-...-+..+
T Consensus       781 L~Ls~N~~ls~N~l~~~ip~~l~~L~~L~~L~Ls~N~-L~~Ip~~l~--~~L~~LdLs~N~l~~i  842 (876)
T 4ecn_A          781 FGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSND-IRKVDEKLT--PQLYILDIADNPNISI  842 (876)
T ss_dssp             EECCCCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSC-CCBCCSCCC--SSSCEEECCSCTTCEE
T ss_pred             EECCCCCCcccccccccChHHHhcCCCCCEEECCCCC-CCccCHhhc--CCCCEEECCCCCCCcc
Confidence            99976      3334455555  79999999999996 599999865  5888887654444333

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=99.64  E-value=8.5e-15  Score=150.30  Aligned_cols=110  Identities=17%  Similarity=0.210  Sum_probs=68.6

Q ss_pred             CccceeecccccccccccccccCCCcCccccEEeEecCCCccccCchhhhccCCCccEEEEecCCccccccccccccccc
Q 039808          190 PSLENLSIHHLWNLTHICEGSVPNGSFARLRILSVHACPKLKFVFSSFMIHFMSNLEDLTVEDCPAIEEIISEGEIIDSG  269 (358)
Q Consensus       190 ~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~l~~l~~L~~L~i~~c~~l~~i~~~~~~~~~~  269 (358)
                      ++|++|+++++.-. .+.  +...+.+++|+.|++.++. +..+.+ ..+..+++|+.|+++++. +..+.      ...
T Consensus       266 ~~L~~L~Ls~n~l~-~~~--~~~~~~l~~L~~L~L~~n~-i~~~~~-~~~~~l~~L~~L~Ls~N~-l~~~~------~~~  333 (844)
T 3j0a_A          266 SSVRHLDLSHGFVF-SLN--SRVFETLKDLKVLNLAYNK-INKIAD-EAFYGLDNLQVLNLSYNL-LGELY------SSN  333 (844)
T ss_dssp             SCCCEEECTTCCCC-EEC--SCCSSSCCCCCEEEEESCC-CCEECT-TTTTTCSSCCEEEEESCC-CSCCC------SCS
T ss_pred             CCccEEECCCCccc-ccC--hhhhhcCCCCCEEECCCCc-CCCCCh-HHhcCCCCCCEEECCCCC-CCccC------HHH
Confidence            46777777665322 221  2234567788888888763 454433 345678888888888763 33322      134


Q ss_pred             cccCCCcceeccccccccccccCC---CCCCccEEeeeCCcCCCccC
Q 039808          270 CTALPRLKKLTLHYLPGLVTIWSS---AWPSLEYVSFYDCPRLKNIG  313 (358)
Q Consensus       270 ~~~l~~L~~L~l~~c~~L~~~~~~---~~~~L~~L~i~~C~~L~~lP  313 (358)
                      +..+++|+.|+++++ .++.++..   .+++|+.|++++|. ++.+|
T Consensus       334 ~~~l~~L~~L~L~~N-~i~~~~~~~~~~l~~L~~L~Ls~N~-l~~i~  378 (844)
T 3j0a_A          334 FYGLPKVAYIDLQKN-HIAIIQDQTFKFLEKLQTLDLRDNA-LTTIH  378 (844)
T ss_dssp             CSSCTTCCEEECCSC-CCCCCCSSCSCSCCCCCEEEEETCC-SCCCS
T ss_pred             hcCCCCCCEEECCCC-CCCccChhhhcCCCCCCEEECCCCC-CCccc
Confidence            667788888888766 56666554   57788888887763 55544

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=99.64  E-value=4.9e-15  Score=140.93  Aligned_cols=230  Identities=18%  Similarity=0.212  Sum_probs=140.2

Q ss_pred             CccCCchhhcCccccEEEeeecCCCcceecccchhhhhhcCCCCCceEEEEccCchhHHHHHhhhccccccccceEEEEE
Q 039808           15 QLISSGIISRLHALKTLSIVVYPGDKRWYKDVKSVVLEVCNLTELSSLCFHFPEIKLLELFLQRCVAWNAQCLTEFRIVV   94 (358)
Q Consensus        15 ~~ip~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~~~~~~l~~l~~~~~~~~~~~~~~L~~l~i~~   94 (358)
                      +.+|.++   ..++++|++++ +.+...      ....+.++++|++|++..+.+..++.                    
T Consensus        56 ~~iP~~~---~~~l~~L~L~~-n~i~~~------~~~~~~~l~~L~~L~Ls~n~i~~i~~--------------------  105 (440)
T 3zyj_A           56 REVPDGI---STNTRLLNLHE-NQIQII------KVNSFKHLRHLEILQLSRNHIRTIEI--------------------  105 (440)
T ss_dssp             SSCCSCC---CTTCSEEECCS-CCCCEE------CTTTTSSCSSCCEEECCSSCCCEECG--------------------
T ss_pred             CcCCCCC---CCCCcEEEccC-CcCCee------CHHHhhCCCCCCEEECCCCcCCccCh--------------------
Confidence            4567764   36788888887 333221      13467888888888886666554431                    


Q ss_pred             eCccccccccCCcccccccccCCceEEeeCCC--CChHHHHhhccCccEEEeccCCCCCccCcccccCccCCcEEEeecC
Q 039808           95 GHDIKNIVSRVPDAVAFDYNKQGKCLRFINGE--NIPDAVLQILACCTAFYLDNHLHINSLSDFGVRSINGLKFCIISEC  172 (358)
Q Consensus        95 ~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~--~~~~~~~~~l~~L~~L~l~~~~~~~~l~~~~l~~l~~L~~L~l~~~  172 (358)
                                    ..+..+.+|+.|.+.++.  .++...+..+++|+.|++.++ .+..++...+.++++|++|++++|
T Consensus       106 --------------~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N-~i~~~~~~~~~~l~~L~~L~l~~~  170 (440)
T 3zyj_A          106 --------------GAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWLRNN-PIESIPSYAFNRIPSLRRLDLGEL  170 (440)
T ss_dssp             --------------GGGTTCSSCCEEECCSSCCSSCCTTTSCSCSSCCEEECCSC-CCCEECTTTTTTCTTCCEEECCCC
T ss_pred             --------------hhccCCccCCEEECCCCcCCeeCHhHhhccccCceeeCCCC-cccccCHHHhhhCcccCEeCCCCC
Confidence                          122233355555555542  333334445667777777776 566665555677777777777777


Q ss_pred             CCceEecCCCCccccCCCccceeecccccccccccccccCCCcCccccEEeEecCCCccccCchhhhccCCCccEEEEec
Q 039808          173 PKIETVVDGKELTTVIFPSLENLSIHHLWNLTHICEGSVPNGSFARLRILSVHACPKLKFVFSSFMIHFMSNLEDLTVED  252 (358)
Q Consensus       173 ~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~l~~l~~L~~L~i~~  252 (358)
                      ..+..++...   ...+++|++|+++++ .++.++    ....+++|++|+++++ .++.+.+ ..+..+++|+.|++++
T Consensus       171 ~~l~~i~~~~---~~~l~~L~~L~L~~n-~l~~~~----~~~~l~~L~~L~Ls~N-~l~~~~~-~~~~~l~~L~~L~L~~  240 (440)
T 3zyj_A          171 KRLSYISEGA---FEGLSNLRYLNLAMC-NLREIP----NLTPLIKLDELDLSGN-HLSAIRP-GSFQGLMHLQKLWMIQ  240 (440)
T ss_dssp             TTCCEECTTT---TTTCSSCCEEECTTS-CCSSCC----CCTTCSSCCEEECTTS-CCCEECT-TTTTTCTTCCEEECTT
T ss_pred             CCcceeCcch---hhcccccCeecCCCC-cCcccc----ccCCCcccCEEECCCC-ccCccCh-hhhccCccCCEEECCC
Confidence            6666664432   445677777777765 333332    2445677777777776 4555433 3456677777777776


Q ss_pred             CCccccccccccccccccccCCCcceeccccccccccccCC---CCCCccEEeeeCCc
Q 039808          253 CPAIEEIISEGEIIDSGCTALPRLKKLTLHYLPGLVTIWSS---AWPSLEYVSFYDCP  307 (358)
Q Consensus       253 c~~l~~i~~~~~~~~~~~~~l~~L~~L~l~~c~~L~~~~~~---~~~~L~~L~i~~C~  307 (358)
                      + .+..+.      ...+..+++|+.|+++++ .++.++..   .+++|+.|+++++|
T Consensus       241 n-~l~~~~------~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~Np  290 (440)
T 3zyj_A          241 S-QIQVIE------RNAFDNLQSLVEINLAHN-NLTLLPHDLFTPLHHLERIHLHHNP  290 (440)
T ss_dssp             C-CCCEEC------TTSSTTCTTCCEEECTTS-CCCCCCTTTTSSCTTCCEEECCSSC
T ss_pred             C-ceeEEC------hhhhcCCCCCCEEECCCC-CCCccChhHhccccCCCEEEcCCCC
Confidence            5 333332      124556777777777665 56666655   56777777777654

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=99.63  E-value=3.4e-15  Score=146.34  Aligned_cols=191  Identities=14%  Similarity=0.059  Sum_probs=93.4

Q ss_pred             CCceEEeeCCC--CChHHHHhhccCccEEEeccCCCCCccCcccccCccCCcEEEeecCCCceEecCCCCccccCCCccc
Q 039808          116 QGKCLRFINGE--NIPDAVLQILACCTAFYLDNHLHINSLSDFGVRSINGLKFCIISECPKIETVVDGKELTTVIFPSLE  193 (358)
Q Consensus       116 ~L~~L~l~~~~--~~~~~~~~~l~~L~~L~l~~~~~~~~l~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~  193 (358)
                      .++.|.+.++.  .++.   ..+++|+.|++.++......+   ...+++|++|++++|.... ... .......+++|+
T Consensus       305 ~L~~L~l~~n~~~~l~~---~~l~~L~~L~l~~n~~~~~~~---~~~~~~L~~L~l~~n~l~~-~~~-~~~~~~~~~~L~  376 (570)
T 2z63_A          305 GWQHLELVNCKFGQFPT---LKLKSLKRLTFTSNKGGNAFS---EVDLPSLEFLDLSRNGLSF-KGC-CSQSDFGTTSLK  376 (570)
T ss_dssp             CCSEEEEESCBCSSCCB---CBCSSCCEEEEESCBSCCBCC---CCBCTTCCEEECCSSCCBE-EEE-EEHHHHTCSCCC
T ss_pred             CccEEeeccCcccccCc---ccccccCEEeCcCCccccccc---cccCCCCCEEeCcCCccCc-ccc-ccccccccCccC
Confidence            56666666553  2222   245566666666653222222   2556666666666653222 100 000133456666


Q ss_pred             eeecccccccccccccccCCCcCccccEEeEecCCCccccCchhhhccCCCccEEEEecCCccccccccccccccccccC
Q 039808          194 NLSIHHLWNLTHICEGSVPNGSFARLRILSVHACPKLKFVFSSFMIHFMSNLEDLTVEDCPAIEEIISEGEIIDSGCTAL  273 (358)
Q Consensus       194 ~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~l~~l~~L~~L~i~~c~~l~~i~~~~~~~~~~~~~l  273 (358)
                      +|+++++... .+.   ...+.+++|++|++.+|. +....+...+..+++|+.|++++|.-....+       ..+..+
T Consensus       377 ~L~l~~n~l~-~~~---~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~-------~~~~~l  444 (570)
T 2z63_A          377 YLDLSFNGVI-TMS---SNFLGLEQLEHLDFQHSN-LKQMSEFSVFLSLRNLIYLDISHTHTRVAFN-------GIFNGL  444 (570)
T ss_dssp             EEECCSCSEE-EEE---EEEETCTTCCEEECTTSE-EESCTTSCTTTTCTTCCEEECTTSCCEECCT-------TTTTTC
T ss_pred             EEECCCCccc-ccc---ccccccCCCCEEEccCCc-cccccchhhhhcCCCCCEEeCcCCcccccch-------hhhhcC
Confidence            6666655322 211   113345666666666543 3322222234556666666666653322222       234556


Q ss_pred             CCcceecccccccc-ccccCC--CCCCccEEeeeCCcCCCcc-CCCCCCCCCeeEEEe
Q 039808          274 PRLKKLTLHYLPGL-VTIWSS--AWPSLEYVSFYDCPRLKNI-GLGSNLKHSVMEIKA  327 (358)
Q Consensus       274 ~~L~~L~l~~c~~L-~~~~~~--~~~~L~~L~i~~C~~L~~l-P~~~~~~~~L~~~~~  327 (358)
                      ++|+.|++++|.-. ..++..  .+++|++|++++|. ++.+ |..+..+++|+.+..
T Consensus       445 ~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l  501 (570)
T 2z63_A          445 SSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQ-LEQLSPTAFNSLSSLQVLNM  501 (570)
T ss_dssp             TTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSC-CCEECTTTTTTCTTCCEEEC
T ss_pred             CcCcEEECcCCcCccccchhhhhcccCCCEEECCCCc-cccCChhhhhcccCCCEEeC
Confidence            66666666655322 133433  56666666666664 3333 555555666666543

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=99.63  E-value=4.6e-15  Score=141.73  Aligned_cols=135  Identities=14%  Similarity=0.061  Sum_probs=73.7

Q ss_pred             cccceeccCCC---CccCCchhhcCccccEEEeeecCCCcceecccchhhhhhcCCCCCceEEEEccCchhHHHHHhhhc
Q 039808            4 SCNVEYVKMPP---QLISSGIISRLHALKTLSIVVYPGDKRWYKDVKSVVLEVCNLTELSSLCFHFPEIKLLELFLQRCV   80 (358)
Q Consensus         4 l~~L~~l~L~~---~~ip~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~~~~~~l~~l~~~~~~~~   80 (358)
                      +.+|++|+++.   ..+|.  ++++++|++|++++ +.+...         .++++++|++|++..+.++.++  ++   
T Consensus        41 l~~L~~L~Ls~n~l~~~~~--l~~l~~L~~L~Ls~-n~l~~~---------~~~~l~~L~~L~Ls~N~l~~~~--~~---  103 (457)
T 3bz5_A           41 LATLTSLDCHNSSITDMTG--IEKLTGLTKLICTS-NNITTL---------DLSQNTNLTYLACDSNKLTNLD--VT---  103 (457)
T ss_dssp             HTTCCEEECCSSCCCCCTT--GGGCTTCSEEECCS-SCCSCC---------CCTTCTTCSEEECCSSCCSCCC--CT---
T ss_pred             cCCCCEEEccCCCcccChh--hcccCCCCEEEccC-CcCCeE---------ccccCCCCCEEECcCCCCceee--cC---
Confidence            56788888887   33553  67888888888887 344321         2667777777777666655543  12   


Q ss_pred             cccccccceEEEEEeCccccccccCCcccccccccCCceEEeeCCC--CChHHHHhhccCccEEEeccCCCCCccCcccc
Q 039808           81 AWNAQCLTEFRIVVGHDIKNIVSRVPDAVAFDYNKQGKCLRFINGE--NIPDAVLQILACCTAFYLDNHLHINSLSDFGV  158 (358)
Q Consensus        81 ~~~~~~L~~l~i~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~--~~~~~~~~~l~~L~~L~l~~~~~~~~l~~~~l  158 (358)
                        .+++|+.+.+.   .+  .+...    .+..+++|+.|.+.++.  +++   ...+++|+.|++.++..+..+   .+
T Consensus       104 --~l~~L~~L~L~---~N--~l~~l----~~~~l~~L~~L~l~~N~l~~l~---l~~l~~L~~L~l~~n~~~~~~---~~  166 (457)
T 3bz5_A          104 --PLTKLTYLNCD---TN--KLTKL----DVSQNPLLTYLNCARNTLTEID---VSHNTQLTELDCHLNKKITKL---DV  166 (457)
T ss_dssp             --TCTTCCEEECC---SS--CCSCC----CCTTCTTCCEEECTTSCCSCCC---CTTCTTCCEEECTTCSCCCCC---CC
T ss_pred             --CCCcCCEEECC---CC--cCCee----cCCCCCcCCEEECCCCccceec---cccCCcCCEEECCCCCccccc---cc
Confidence              45566655541   11  01111    13444456666665543  221   233555666666555433333   24


Q ss_pred             cCccCCcEEEeecC
Q 039808          159 RSINGLKFCIISEC  172 (358)
Q Consensus       159 ~~l~~L~~L~l~~~  172 (358)
                      +.+++|++|++++|
T Consensus       167 ~~l~~L~~L~ls~n  180 (457)
T 3bz5_A          167 TPQTQLTTLDCSFN  180 (457)
T ss_dssp             TTCTTCCEEECCSS
T ss_pred             ccCCcCCEEECCCC
Confidence            45555555555554

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=99.62  E-value=6.9e-15  Score=140.49  Aligned_cols=265  Identities=15%  Similarity=0.082  Sum_probs=151.0

Q ss_pred             cccceeccCCCCccCCchhhcCccccEEEeeecCCCcceecccchhhhhhcCCCCCceEEEEccCchhHHHHHhhhcccc
Q 039808            4 SCNVEYVKMPPQLISSGIISRLHALKTLSIVVYPGDKRWYKDVKSVVLEVCNLTELSSLCFHFPEIKLLELFLQRCVAWN   83 (358)
Q Consensus         4 l~~L~~l~L~~~~ip~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~~~~~~l~~l~~~~~~~~~~~   83 (358)
                      +.+|++|+++...+..--++.+++|++|++++ +.+..       .  .++++++|++|++..+.++.++  ++     .
T Consensus        63 l~~L~~L~Ls~n~l~~~~~~~l~~L~~L~Ls~-N~l~~-------~--~~~~l~~L~~L~L~~N~l~~l~--~~-----~  125 (457)
T 3bz5_A           63 LTGLTKLICTSNNITTLDLSQNTNLTYLACDS-NKLTN-------L--DVTPLTKLTYLNCDTNKLTKLD--VS-----Q  125 (457)
T ss_dssp             CTTCSEEECCSSCCSCCCCTTCTTCSEEECCS-SCCSC-------C--CCTTCTTCCEEECCSSCCSCCC--CT-----T
T ss_pred             cCCCCEEEccCCcCCeEccccCCCCCEEECcC-CCCce-------e--ecCCCCcCCEEECCCCcCCeec--CC-----C
Confidence            56677777776322211156777777777776 33321       1  2667777777777666655543  12     4


Q ss_pred             ccccceEEEEEeCccccccccCCcccccccccCCceEEeeCCCCChHHHHhhccCccEEEeccCCCCCccCcccccCccC
Q 039808           84 AQCLTEFRIVVGHDIKNIVSRVPDAVAFDYNKQGKCLRFINGENIPDAVLQILACCTAFYLDNHLHINSLSDFGVRSING  163 (358)
Q Consensus        84 ~~~L~~l~i~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~l~~~~l~~l~~  163 (358)
                      +++|+.+.+   ..+  .+...    .+..++.|+.|.+.++..+.......+++|+.|++.++ .+..++   ++.+++
T Consensus       126 l~~L~~L~l---~~N--~l~~l----~l~~l~~L~~L~l~~n~~~~~~~~~~l~~L~~L~ls~n-~l~~l~---l~~l~~  192 (457)
T 3bz5_A          126 NPLLTYLNC---ARN--TLTEI----DVSHNTQLTELDCHLNKKITKLDVTPQTQLTTLDCSFN-KITELD---VSQNKL  192 (457)
T ss_dssp             CTTCCEEEC---TTS--CCSCC----CCTTCTTCCEEECTTCSCCCCCCCTTCTTCCEEECCSS-CCCCCC---CTTCTT
T ss_pred             CCcCCEEEC---CCC--cccee----ccccCCcCCEEECCCCCcccccccccCCcCCEEECCCC-ccceec---cccCCC
Confidence            556665554   111  01111    23445566777776653222212334667777777776 555543   666777


Q ss_pred             CcEEEeecCCCceEecCCCCccccCCCccceeecccccccccccccccCCCcCccccEEeEecCCCccccCchhhhccCC
Q 039808          164 LKFCIISECPKIETVVDGKELTTVIFPSLENLSIHHLWNLTHICEGSVPNGSFARLRILSVHACPKLKFVFSSFMIHFMS  243 (358)
Q Consensus       164 L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~l~~l~  243 (358)
                      |+.|++++|. +..+      ....+++|++|+++++. ++.+   +  .+.+++|++|+++++ .++.+++    +.++
T Consensus       193 L~~L~l~~N~-l~~~------~l~~l~~L~~L~Ls~N~-l~~i---p--~~~l~~L~~L~l~~N-~l~~~~~----~~l~  254 (457)
T 3bz5_A          193 LNRLNCDTNN-ITKL------DLNQNIQLTFLDCSSNK-LTEI---D--VTPLTQLTYFDCSVN-PLTELDV----STLS  254 (457)
T ss_dssp             CCEEECCSSC-CSCC------CCTTCTTCSEEECCSSC-CSCC---C--CTTCTTCSEEECCSS-CCSCCCC----TTCT
T ss_pred             CCEEECcCCc-CCee------ccccCCCCCEEECcCCc-cccc---C--ccccCCCCEEEeeCC-cCCCcCH----HHCC
Confidence            7777777663 2222      14456777777777653 3333   1  445677777777776 3444321    3344


Q ss_pred             CccEE----------EEecCCccccccccccccccccccCCCcceeccccccccccccCC----------CCCCccEEee
Q 039808          244 NLEDL----------TVEDCPAIEEIISEGEIIDSGCTALPRLKKLTLHYLPGLVTIWSS----------AWPSLEYVSF  303 (358)
Q Consensus       244 ~L~~L----------~i~~c~~l~~i~~~~~~~~~~~~~l~~L~~L~l~~c~~L~~~~~~----------~~~~L~~L~i  303 (358)
                      +|+.|          ++++|..++.++         .+.+++|+.|++++|..++.++..          .+++|++|++
T Consensus       255 ~L~~L~l~~n~L~~L~l~~n~~~~~~~---------~~~l~~L~~L~Ls~n~~l~~l~~~~~~L~~L~l~~~~~L~~L~L  325 (457)
T 3bz5_A          255 KLTTLHCIQTDLLEIDLTHNTQLIYFQ---------AEGCRKIKELDVTHNTQLYLLDCQAAGITELDLSQNPKLVYLYL  325 (457)
T ss_dssp             TCCEEECTTCCCSCCCCTTCTTCCEEE---------CTTCTTCCCCCCTTCTTCCEEECTTCCCSCCCCTTCTTCCEEEC
T ss_pred             CCCEEeccCCCCCEEECCCCccCCccc---------ccccccCCEEECCCCcccceeccCCCcceEechhhcccCCEEEC
Confidence            44444          333443333333         567789999999988776666542          4567777777


Q ss_pred             eCCcCCCccCCCCCCCCCeeEEEec
Q 039808          304 YDCPRLKNIGLGSNLKHSVMEIKAE  328 (358)
Q Consensus       304 ~~C~~L~~lP~~~~~~~~L~~~~~~  328 (358)
                      +++ +++.+|  +..+++|+.+...
T Consensus       326 ~~N-~l~~l~--l~~l~~L~~L~l~  347 (457)
T 3bz5_A          326 NNT-ELTELD--VSHNTKLKSLSCV  347 (457)
T ss_dssp             TTC-CCSCCC--CTTCTTCSEEECC
T ss_pred             CCC-cccccc--cccCCcCcEEECC
Confidence            765 366664  5567788887653

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=99.62  E-value=1.1e-14  Score=145.78  Aligned_cols=177  Identities=14%  Similarity=0.049  Sum_probs=90.3

Q ss_pred             ccEEEeccCCCCCccCcccccCccCCcEEEeecCCCceEecCCCCccccCCCccceeecccccccccc-----cc-cccC
Q 039808          139 CTAFYLDNHLHINSLSDFGVRSINGLKFCIISECPKIETVVDGKELTTVIFPSLENLSIHHLWNLTHI-----CE-GSVP  212 (358)
Q Consensus       139 L~~L~l~~~~~~~~l~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~-----~~-~~~~  212 (358)
                      |+.|++.++ .+..+....++.+++|++|++++|......+..    ...+++|+.|.+.++.....+     +. ....
T Consensus       250 L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~----~~~l~~L~~L~L~~~~~~~~~~~~~lp~i~~~~  324 (680)
T 1ziw_A          250 LTMLDLSYN-NLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHS----LHGLFNVRYLNLKRSFTKQSISLASLPKIDDFS  324 (680)
T ss_dssp             CCEEECTTS-CCCEECTTTTTTCTTCCEEECCSCCBSEECTTT----TTTCTTCCEEECTTCBCCC------CCEECTTT
T ss_pred             CCEEECCCC-CcCccCcccccCcccccEeeCCCCccCccChhh----hcCCCCccEEeccchhhhcccccccccccChhh
Confidence            555555555 344433334555555666655555322221111    344556666666543211111     00 0112


Q ss_pred             CCcCccccEEeEecCCCccccCchhhhccCCCccEEEEecCC-ccccccccccccccccccCCCcceecccccccccccc
Q 039808          213 NGSFARLRILSVHACPKLKFVFSSFMIHFMSNLEDLTVEDCP-AIEEIISEGEIIDSGCTALPRLKKLTLHYLPGLVTIW  291 (358)
Q Consensus       213 ~~~~~~L~~L~l~~c~~l~~l~~~~~l~~l~~L~~L~i~~c~-~l~~i~~~~~~~~~~~~~l~~L~~L~l~~c~~L~~~~  291 (358)
                      .+.+++|++|++.++. +..+.+ ..+..+++|+.|++++|. .+..++..    .......++|+.|+++++ .++.+.
T Consensus       325 ~~~l~~L~~L~l~~n~-l~~~~~-~~~~~l~~L~~L~Ls~n~~~~~~l~~~----~f~~~~~~~L~~L~L~~n-~l~~~~  397 (680)
T 1ziw_A          325 FQWLKCLEHLNMEDND-IPGIKS-NMFTGLINLKYLSLSNSFTSLRTLTNE----TFVSLAHSPLHILNLTKN-KISKIE  397 (680)
T ss_dssp             TTTCTTCCEEECCSCC-BCCCCT-TTTTTCTTCCEEECTTCBSCCCEECTT----TTGGGTTSCCCEEECTTS-CCCEEC
T ss_pred             cccCCCCCEEECCCCc-cCCCCh-hHhccccCCcEEECCCCchhhhhcchh----hhcccccCcCceEECCCC-CCCeEC
Confidence            3455667777776653 343322 345667777777776653 12222200    001112257788888766 455554


Q ss_pred             CC---CCCCccEEeeeCCcCCCccC-CCCCCCCCeeEEEe
Q 039808          292 SS---AWPSLEYVSFYDCPRLKNIG-LGSNLKHSVMEIKA  327 (358)
Q Consensus       292 ~~---~~~~L~~L~i~~C~~L~~lP-~~~~~~~~L~~~~~  327 (358)
                      ..   .+++|+.|++++|.--..+| .....+++|+.+..
T Consensus       398 ~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L  437 (680)
T 1ziw_A          398 SDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYL  437 (680)
T ss_dssp             TTTTTTCTTCCEEECCSSCCEEECCSGGGTTCTTCCEEEC
T ss_pred             hhhhhCCCCCCEEeCCCCcCccccCcccccCcccccEEec
Confidence            43   68889999998886444565 34456677777754

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=99.62  E-value=6.1e-15  Score=134.91  Aligned_cols=276  Identities=14%  Similarity=0.171  Sum_probs=155.8

Q ss_pred             CcccceeccCCC---CccCCchhhcCccccEEEeeecCCCcceecccchhhhhhcCCCCCceEEEEccCchhH-HHHHhh
Q 039808            3 LSCNVEYVKMPP---QLISSGIISRLHALKTLSIVVYPGDKRWYKDVKSVVLEVCNLTELSSLCFHFPEIKLL-ELFLQR   78 (358)
Q Consensus         3 ~l~~L~~l~L~~---~~ip~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~~~~~~l~~l-~~~~~~   78 (358)
                      +.++++.++++.   +.+|..+   .++|++|++++ +.+...      .+..+.++++|++|++..+.+..+ +..++ 
T Consensus        31 c~c~l~~l~~~~~~l~~ip~~~---~~~l~~L~l~~-n~i~~~------~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~-   99 (332)
T 2ft3_A           31 CHCHLRVVQCSDLGLKAVPKEI---SPDTTLLDLQN-NDISEL------RKDDFKGLQHLYALVLVNNKISKIHEKAFS-   99 (332)
T ss_dssp             CEEETTEEECCSSCCSSCCSCC---CTTCCEEECCS-SCCCEE------CTTTTTTCTTCCEEECCSSCCCEECGGGST-
T ss_pred             CcccCCEEECCCCCccccCCCC---CCCCeEEECCC-CcCCcc------CHhHhhCCCCCcEEECCCCccCccCHhHhh-
Confidence            446788898886   5678765   36899999998 333211      134689999999999977776654 22222 


Q ss_pred             hccccccccceEEEEEeCccccccccCCcccccccccCCceEEeeCCC--CChHHHHhhccCccEEEeccCCCCCc--cC
Q 039808           79 CVAWNAQCLTEFRIVVGHDIKNIVSRVPDAVAFDYNKQGKCLRFINGE--NIPDAVLQILACCTAFYLDNHLHINS--LS  154 (358)
Q Consensus        79 ~~~~~~~~L~~l~i~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~--~~~~~~~~~l~~L~~L~l~~~~~~~~--l~  154 (358)
                          .+++|+.+.+.   .+  .+..+|.  .+.  ..|+.|.+.++.  .++......+++|+.|++.++ .+..  ..
T Consensus       100 ----~l~~L~~L~L~---~n--~l~~l~~--~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~  165 (332)
T 2ft3_A          100 ----PLRKLQKLYIS---KN--HLVEIPP--NLP--SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGN-PLENSGFE  165 (332)
T ss_dssp             ----TCTTCCEEECC---SS--CCCSCCS--SCC--TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSC-CCBGGGSC
T ss_pred             ----CcCCCCEEECC---CC--cCCccCc--ccc--ccCCEEECCCCccCccCHhHhCCCccCCEEECCCC-ccccCCCC
Confidence                45666666651   11  1123332  111  366777776653  344444455677777777766 4432  22


Q ss_pred             cccccCccCCcEEEeecCCCceEecCCCCccccCCCccceeecccccccccccccccCCCcCccccEEeEecCCCccccC
Q 039808          155 DFGVRSINGLKFCIISECPKIETVVDGKELTTVIFPSLENLSIHHLWNLTHICEGSVPNGSFARLRILSVHACPKLKFVF  234 (358)
Q Consensus       155 ~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~  234 (358)
                      ...+..+ +|++|++++|. +..++..      .+++|++|+++++.- +.+.  +...+.+++|++|+++++ .++.+.
T Consensus       166 ~~~~~~l-~L~~L~l~~n~-l~~l~~~------~~~~L~~L~l~~n~i-~~~~--~~~l~~l~~L~~L~L~~N-~l~~~~  233 (332)
T 2ft3_A          166 PGAFDGL-KLNYLRISEAK-LTGIPKD------LPETLNELHLDHNKI-QAIE--LEDLLRYSKLYRLGLGHN-QIRMIE  233 (332)
T ss_dssp             TTSSCSC-CCSCCBCCSSB-CSSCCSS------SCSSCSCCBCCSSCC-CCCC--TTSSTTCTTCSCCBCCSS-CCCCCC
T ss_pred             cccccCC-ccCEEECcCCC-CCccCcc------ccCCCCEEECCCCcC-CccC--HHHhcCCCCCCEEECCCC-cCCcCC
Confidence            2234555 67777776663 2223221      235777777766532 2221  122345667777777765 344443


Q ss_pred             chhhhccCCCccEEEEecCCccccccccccccccccccCCCcceeccccccccccccCC---------CCCCccEEeeeC
Q 039808          235 SSFMIHFMSNLEDLTVEDCPAIEEIISEGEIIDSGCTALPRLKKLTLHYLPGLVTIWSS---------AWPSLEYVSFYD  305 (358)
Q Consensus       235 ~~~~l~~l~~L~~L~i~~c~~l~~i~~~~~~~~~~~~~l~~L~~L~l~~c~~L~~~~~~---------~~~~L~~L~i~~  305 (358)
                      + ..+..+++|+.|+++++ .+..++       ..+..+++|+.|+++++ .++.++..         ..++|+.+++.+
T Consensus       234 ~-~~~~~l~~L~~L~L~~N-~l~~lp-------~~l~~l~~L~~L~l~~N-~l~~~~~~~~~~~~~~~~~~~l~~L~l~~  303 (332)
T 2ft3_A          234 N-GSLSFLPTLRELHLDNN-KLSRVP-------AGLPDLKLLQVVYLHTN-NITKVGVNDFCPVGFGVKRAYYNGISLFN  303 (332)
T ss_dssp             T-TGGGGCTTCCEEECCSS-CCCBCC-------TTGGGCTTCCEEECCSS-CCCBCCTTSSSCSSCCSSSCCBSEEECCS
T ss_pred             h-hHhhCCCCCCEEECCCC-cCeecC-------hhhhcCccCCEEECCCC-CCCccChhHccccccccccccccceEeec
Confidence            3 23466777777777765 444554       34566777777777655 46655543         145677777777


Q ss_pred             CcCC--CccCCCCCCCCCeeEE
Q 039808          306 CPRL--KNIGLGSNLKHSVMEI  325 (358)
Q Consensus       306 C~~L--~~lP~~~~~~~~L~~~  325 (358)
                      ++..  ...|.....+++|+.+
T Consensus       304 N~~~~~~~~~~~~~~l~~L~~l  325 (332)
T 2ft3_A          304 NPVPYWEVQPATFRCVTDRLAI  325 (332)
T ss_dssp             SSSCGGGSCGGGGTTBCCSTTE
T ss_pred             CcccccccCcccccccchhhhh
Confidence            7632  1223333444555444

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=99.61  E-value=1.1e-14  Score=139.07  Aligned_cols=230  Identities=17%  Similarity=0.169  Sum_probs=146.1

Q ss_pred             CccCCchhhcCccccEEEeeecCCCcceecccchhhhhhcCCCCCceEEEEccCchhHHHHHhhhccccccccceEEEEE
Q 039808           15 QLISSGIISRLHALKTLSIVVYPGDKRWYKDVKSVVLEVCNLTELSSLCFHFPEIKLLELFLQRCVAWNAQCLTEFRIVV   94 (358)
Q Consensus        15 ~~ip~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~~~~~~l~~l~~~~~~~~~~~~~~L~~l~i~~   94 (358)
                      ..+|.++   ..+|++|++++ +.+...      .+..+.++++|++|++..+.+..++.                    
T Consensus        67 ~~iP~~~---~~~l~~L~L~~-n~i~~~------~~~~~~~l~~L~~L~Ls~n~i~~~~~--------------------  116 (452)
T 3zyi_A           67 SEVPQGI---PSNTRYLNLME-NNIQMI------QADTFRHLHHLEVLQLGRNSIRQIEV--------------------  116 (452)
T ss_dssp             SSCCSCC---CTTCSEEECCS-SCCCEE------CTTTTTTCTTCCEEECCSSCCCEECT--------------------
T ss_pred             CccCCCC---CCCccEEECcC-CcCceE------CHHHcCCCCCCCEEECCCCccCCcCh--------------------
Confidence            4567654   35788888887 333211      13467888888888886665544321                    


Q ss_pred             eCccccccccCCcccccccccCCceEEeeCCC--CChHHHHhhccCccEEEeccCCCCCccCcccccCccCCcEEEeecC
Q 039808           95 GHDIKNIVSRVPDAVAFDYNKQGKCLRFINGE--NIPDAVLQILACCTAFYLDNHLHINSLSDFGVRSINGLKFCIISEC  172 (358)
Q Consensus        95 ~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~--~~~~~~~~~l~~L~~L~l~~~~~~~~l~~~~l~~l~~L~~L~l~~~  172 (358)
                                    ..+..+.+|+.|.+.++.  .++......+++|+.|++.++ .+..++...+.++++|++|++++|
T Consensus       117 --------------~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~l~~~  181 (452)
T 3zyi_A          117 --------------GAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWLRNN-PIESIPSYAFNRVPSLMRLDLGEL  181 (452)
T ss_dssp             --------------TTTTTCTTCCEEECCSSCCSBCCTTTSSSCTTCCEEECCSC-CCCEECTTTTTTCTTCCEEECCCC
T ss_pred             --------------hhccCcccCCEEECCCCcCCccChhhhcccCCCCEEECCCC-CcceeCHhHHhcCCcccEEeCCCC
Confidence                          122333456666665543  344444455777788888777 666666556777888888888877


Q ss_pred             CCceEecCCCCccccCCCccceeecccccccccccccccCCCcCccccEEeEecCCCccccCchhhhccCCCccEEEEec
Q 039808          173 PKIETVVDGKELTTVIFPSLENLSIHHLWNLTHICEGSVPNGSFARLRILSVHACPKLKFVFSSFMIHFMSNLEDLTVED  252 (358)
Q Consensus       173 ~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~l~~l~~L~~L~i~~  252 (358)
                      ..+..++...   ...+++|++|+++++. ++.++    ....+++|++|+++++. ++.+.+ ..+..+++|+.|++++
T Consensus       182 ~~l~~i~~~~---~~~l~~L~~L~L~~n~-l~~~~----~~~~l~~L~~L~Ls~N~-l~~~~~-~~~~~l~~L~~L~L~~  251 (452)
T 3zyi_A          182 KKLEYISEGA---FEGLFNLKYLNLGMCN-IKDMP----NLTPLVGLEELEMSGNH-FPEIRP-GSFHGLSSLKKLWVMN  251 (452)
T ss_dssp             TTCCEECTTT---TTTCTTCCEEECTTSC-CSSCC----CCTTCTTCCEEECTTSC-CSEECG-GGGTTCTTCCEEECTT
T ss_pred             CCccccChhh---ccCCCCCCEEECCCCc-ccccc----cccccccccEEECcCCc-CcccCc-ccccCccCCCEEEeCC
Confidence            7777665432   4566778888887753 33331    24467788888887763 454433 3456778888888877


Q ss_pred             CCccccccccccccccccccCCCcceeccccccccccccCC---CCCCccEEeeeCCc
Q 039808          253 CPAIEEIISEGEIIDSGCTALPRLKKLTLHYLPGLVTIWSS---AWPSLEYVSFYDCP  307 (358)
Q Consensus       253 c~~l~~i~~~~~~~~~~~~~l~~L~~L~l~~c~~L~~~~~~---~~~~L~~L~i~~C~  307 (358)
                      +. +..+.      ...+..+++|+.|+++++ .++.++..   .+++|+.|+++++|
T Consensus       252 n~-l~~~~------~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~Np  301 (452)
T 3zyi_A          252 SQ-VSLIE------RNAFDGLASLVELNLAHN-NLSSLPHDLFTPLRYLVELHLHHNP  301 (452)
T ss_dssp             SC-CCEEC------TTTTTTCTTCCEEECCSS-CCSCCCTTSSTTCTTCCEEECCSSC
T ss_pred             Cc-CceEC------HHHhcCCCCCCEEECCCC-cCCccChHHhccccCCCEEEccCCC
Confidence            63 33332      134566778888888766 67767665   57788888887754

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=99.61  E-value=4.6e-15  Score=148.65  Aligned_cols=97  Identities=19%  Similarity=0.202  Sum_probs=44.2

Q ss_pred             CcCccccEEeEecCCCccccCchhhhccCCCccEEEEecCCcccccccc--ccccccccccCCCcceecccccccccccc
Q 039808          214 GSFARLRILSVHACPKLKFVFSSFMIHFMSNLEDLTVEDCPAIEEIISE--GEIIDSGCTALPRLKKLTLHYLPGLVTIW  291 (358)
Q Consensus       214 ~~~~~L~~L~l~~c~~l~~l~~~~~l~~l~~L~~L~i~~c~~l~~i~~~--~~~~~~~~~~l~~L~~L~l~~c~~L~~~~  291 (358)
                      +.+++|++|++.++. +....+ ..+..+++|+.|+++++.....+...  .......+..+++|+.|+++++ .++.++
T Consensus       269 ~~l~~L~~L~L~~n~-l~~~~~-~~~~~l~~L~~L~L~~~~~~~~~~~~~lp~i~~~~~~~l~~L~~L~l~~n-~l~~~~  345 (680)
T 1ziw_A          269 AWLPQLEYFFLEYNN-IQHLFS-HSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDN-DIPGIK  345 (680)
T ss_dssp             TTCTTCCEEECCSCC-BSEECT-TTTTTCTTCCEEECTTCBCCC------CCEECTTTTTTCTTCCEEECCSC-CBCCCC
T ss_pred             cCcccccEeeCCCCc-cCccCh-hhhcCCCCccEEeccchhhhcccccccccccChhhcccCCCCCEEECCCC-ccCCCC
Confidence            344555555555542 333222 23345555555555543211110000  0001123455666777777655 344444


Q ss_pred             CC---CCCCccEEeeeCCc-CCCccC
Q 039808          292 SS---AWPSLEYVSFYDCP-RLKNIG  313 (358)
Q Consensus       292 ~~---~~~~L~~L~i~~C~-~L~~lP  313 (358)
                      ..   .+++|++|++++|. .+..+|
T Consensus       346 ~~~~~~l~~L~~L~Ls~n~~~~~~l~  371 (680)
T 1ziw_A          346 SNMFTGLINLKYLSLSNSFTSLRTLT  371 (680)
T ss_dssp             TTTTTTCTTCCEEECTTCBSCCCEEC
T ss_pred             hhHhccccCCcEEECCCCchhhhhcc
Confidence            33   56777777777664 234444

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=99.61  E-value=6.6e-15  Score=151.14  Aligned_cols=292  Identities=16%  Similarity=0.118  Sum_probs=180.5

Q ss_pred             cccceeccCCC---CccCCchhhcCccccEEEeeecCCCcceecccchh-hhhhcCCCCCceEEEEccCchhH-HHHHhh
Q 039808            4 SCNVEYVKMPP---QLISSGIISRLHALKTLSIVVYPGDKRWYKDVKSV-VLEVCNLTELSSLCFHFPEIKLL-ELFLQR   78 (358)
Q Consensus         4 l~~L~~l~L~~---~~ip~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~-~~~l~~l~~L~~L~~~~~~l~~l-~~~~~~   78 (358)
                      ..+++.|+|+.   +.+++..++++.+|++|+++++...       ..+ +..+.+|++|++|+++.+.+..+ |..++ 
T Consensus        23 p~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~-------~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~~~-   94 (844)
T 3j0a_A           23 LNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTP-------LTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQ-   94 (844)
T ss_dssp             CTTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCC-------CEECTTTTSSCTTCCEEECTTCCCCEECTTSSC-
T ss_pred             CCCcCEEECCCCcCCccChhHCcccccCeEEeCCCCCCc-------cccCHHHhcCCCCCCEEECCCCcCcccCHhHcc-
Confidence            46788888887   3344555788899999999873211       122 45688888888888877766554 32222 


Q ss_pred             hccccccccceEEEEEeCccccccccCCcccccccccCCceEEeeCCC--CCh-HHHHhhccCccEEEeccCCCCCccCc
Q 039808           79 CVAWNAQCLTEFRIVVGHDIKNIVSRVPDAVAFDYNKQGKCLRFINGE--NIP-DAVLQILACCTAFYLDNHLHINSLSD  155 (358)
Q Consensus        79 ~~~~~~~~L~~l~i~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~--~~~-~~~~~~l~~L~~L~l~~~~~~~~l~~  155 (358)
                          .+++|+.|.+.   .+ ......+....+..+++|+.|++.++.  +.. ......+++|+.|++.++ .+..+..
T Consensus        95 ----~l~~L~~L~Ls---~n-~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N-~i~~~~~  165 (844)
T 3j0a_A           95 ----GLFHLFELRLY---FC-GLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSN-QIFLVCE  165 (844)
T ss_dssp             ----SCSSCCCEECT---TC-CCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESS-CCCCCCS
T ss_pred             ----CCcccCEeeCc---CC-CCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCC-cCCeeCH
Confidence                45666666651   11 011122332346667788888887764  322 234566888888888887 5544433


Q ss_pred             ccccCc--cCCcEEEeecCCCceEecCCCCccccCCC------ccceeeccccccccccc--------------------
Q 039808          156 FGVRSI--NGLKFCIISECPKIETVVDGKELTTVIFP------SLENLSIHHLWNLTHIC--------------------  207 (358)
Q Consensus       156 ~~l~~l--~~L~~L~l~~~~~~~~~~~~~~~~~~~l~------~L~~L~l~~~~~l~~~~--------------------  207 (358)
                      ..++.+  ++|+.|++++|......+..    ...++      +|++|+++++.-...+.                    
T Consensus       166 ~~l~~l~~~~L~~L~L~~n~l~~~~~~~----~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~  241 (844)
T 3j0a_A          166 HELEPLQGKTLSFFSLAANSLYSRVSVD----WGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHH  241 (844)
T ss_dssp             GGGHHHHHCSSCCCEECCSBSCCCCCCC----CCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSS
T ss_pred             HHcccccCCccceEECCCCccccccccc----hhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCcccccceecccc
Confidence            345555  67888888776543322211    11111      37777776652111000                    


Q ss_pred             ---------------ccccCCCcCccccEEeEecCCCccccCchhhhccCCCccEEEEecCCcccccccccccccccccc
Q 039808          208 ---------------EGSVPNGSFARLRILSVHACPKLKFVFSSFMIHFMSNLEDLTVEDCPAIEEIISEGEIIDSGCTA  272 (358)
Q Consensus       208 ---------------~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~l~~l~~L~~L~i~~c~~l~~i~~~~~~~~~~~~~  272 (358)
                                     .........++|+.|+++++. +..+.+ ..++.+++|+.|+++++. +..+.      ...+..
T Consensus       242 ~~~~~~~~~~l~~~~~~~f~~l~~~~L~~L~Ls~n~-l~~~~~-~~~~~l~~L~~L~L~~n~-i~~~~------~~~~~~  312 (844)
T 3j0a_A          242 IMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGF-VFSLNS-RVFETLKDLKVLNLAYNK-INKIA------DEAFYG  312 (844)
T ss_dssp             CCBCSSSCSSSTTGGGTTTTTTTTSCCCEEECTTCC-CCEECS-CCSSSCCCCCEEEEESCC-CCEEC------TTTTTT
T ss_pred             cccccccccccCCCChhhhhccccCCccEEECCCCc-ccccCh-hhhhcCCCCCEEECCCCc-CCCCC------hHHhcC
Confidence                           000000113689999998874 554433 356789999999999874 44332      135778


Q ss_pred             CCCcceeccccccccccccCC---CCCCccEEeeeCCcCCCccCCC-CCCCCCeeEEEe
Q 039808          273 LPRLKKLTLHYLPGLVTIWSS---AWPSLEYVSFYDCPRLKNIGLG-SNLKHSVMEIKA  327 (358)
Q Consensus       273 l~~L~~L~l~~c~~L~~~~~~---~~~~L~~L~i~~C~~L~~lP~~-~~~~~~L~~~~~  327 (358)
                      +++|+.|+++++ .++.+...   .+++|+.|++++| .+..+|.. ...+++|+.+..
T Consensus       313 l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~L~~N-~i~~~~~~~~~~l~~L~~L~L  369 (844)
T 3j0a_A          313 LDNLQVLNLSYN-LLGELYSSNFYGLPKVAYIDLQKN-HIAIIQDQTFKFLEKLQTLDL  369 (844)
T ss_dssp             CSSCCEEEEESC-CCSCCCSCSCSSCTTCCEEECCSC-CCCCCCSSCSCSCCCCCEEEE
T ss_pred             CCCCCEEECCCC-CCCccCHHHhcCCCCCCEEECCCC-CCCccChhhhcCCCCCCEEEC
Confidence            999999999877 56666444   8999999999998 57777654 556778887754

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=99.59  E-value=1.1e-14  Score=134.41  Aligned_cols=255  Identities=16%  Similarity=0.121  Sum_probs=165.5

Q ss_pred             CccCCchhhcCccccEEEeeecCCCcceecccchhhhhhcCCCCCceEEEEccCchhHHHHHhhhccccccccceEEEEE
Q 039808           15 QLISSGIISRLHALKTLSIVVYPGDKRWYKDVKSVVLEVCNLTELSSLCFHFPEIKLLELFLQRCVAWNAQCLTEFRIVV   94 (358)
Q Consensus        15 ~~ip~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~~~~~~l~~l~~~~~~~~~~~~~~L~~l~i~~   94 (358)
                      +.+|.++   ..+|++|++++ +.+...      ....+.++++|++|++..+.+..++.                    
T Consensus        44 ~~iP~~~---~~~L~~L~l~~-n~i~~~------~~~~~~~l~~L~~L~L~~n~l~~~~~--------------------   93 (353)
T 2z80_A           44 NSIPSGL---TEAVKSLDLSN-NRITYI------SNSDLQRCVNLQALVLTSNGINTIEE--------------------   93 (353)
T ss_dssp             SSCCTTC---CTTCCEEECTT-SCCCEE------CTTTTTTCTTCCEEECTTSCCCEECT--------------------
T ss_pred             ccccccc---cccCcEEECCC-CcCccc------CHHHhccCCCCCEEECCCCccCccCH--------------------
Confidence            4567654   34789998887 333211      12357888888888885555443321                    


Q ss_pred             eCccccccccCCcccccccccCCceEEeeCCC--CChHHHHhhccCccEEEeccCCCCCccCc-ccccCccCCcEEEeec
Q 039808           95 GHDIKNIVSRVPDAVAFDYNKQGKCLRFINGE--NIPDAVLQILACCTAFYLDNHLHINSLSD-FGVRSINGLKFCIISE  171 (358)
Q Consensus        95 ~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~--~~~~~~~~~l~~L~~L~l~~~~~~~~l~~-~~l~~l~~L~~L~l~~  171 (358)
                                    ..+..+.+|+.|++.++.  .++......+++|+.|++.++ .+..++. ..+.++++|++|++++
T Consensus        94 --------------~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~l~~~~~~~~l~~L~~L~l~~  158 (353)
T 2z80_A           94 --------------DSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGN-PYKTLGETSLFSHLTKLQILRVGN  158 (353)
T ss_dssp             --------------TTTTTCTTCCEEECCSSCCSSCCHHHHTTCTTCSEEECTTC-CCSSSCSSCSCTTCTTCCEEEEEE
T ss_pred             --------------hhcCCCCCCCEEECCCCcCCcCCHhHhCCCccCCEEECCCC-CCcccCchhhhccCCCCcEEECCC
Confidence                          123334477788877663  566665677899999999988 7777765 3578899999999999


Q ss_pred             CCCceEecCCCCccccCCCccceeecccccccccccccccCCCcCccccEEeEecCCCccccCchhhhccCCCccEEEEe
Q 039808          172 CPKIETVVDGKELTTVIFPSLENLSIHHLWNLTHICEGSVPNGSFARLRILSVHACPKLKFVFSSFMIHFMSNLEDLTVE  251 (358)
Q Consensus       172 ~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~l~~l~~L~~L~i~  251 (358)
                      |..+..++...   ...+++|++|+++++.-....   +...+.+++|++|++.++. ++.+ +...+..+++|+.|+++
T Consensus       159 n~~~~~~~~~~---~~~l~~L~~L~l~~n~l~~~~---~~~l~~l~~L~~L~l~~n~-l~~~-~~~~~~~~~~L~~L~L~  230 (353)
T 2z80_A          159 MDTFTKIQRKD---FAGLTFLEELEIDASDLQSYE---PKSLKSIQNVSHLILHMKQ-HILL-LEIFVDVTSSVECLELR  230 (353)
T ss_dssp             SSSCCEECTTT---TTTCCEEEEEEEEETTCCEEC---TTTTTTCSEEEEEEEECSC-STTH-HHHHHHHTTTEEEEEEE
T ss_pred             CccccccCHHH---ccCCCCCCEEECCCCCcCccC---HHHHhccccCCeecCCCCc-cccc-hhhhhhhcccccEEECC
Confidence            87666664332   566889999999887533221   2335678899999999875 4544 33455678999999999


Q ss_pred             cCCccccccccccccccccccCCCcceecccccc----ccccccCC--CCCCccEEeeeCCcCCCccCCCC-CCCCCeeE
Q 039808          252 DCPAIEEIISEGEIIDSGCTALPRLKKLTLHYLP----GLVTIWSS--AWPSLEYVSFYDCPRLKNIGLGS-NLKHSVME  324 (358)
Q Consensus       252 ~c~~l~~i~~~~~~~~~~~~~l~~L~~L~l~~c~----~L~~~~~~--~~~~L~~L~i~~C~~L~~lP~~~-~~~~~L~~  324 (358)
                      ++. +..++...-   ......+.++.+++.++.    .+..++..  .+++|++|++++| +++.+|... ..+++|+.
T Consensus       231 ~n~-l~~~~~~~l---~~~~~~~~l~~l~L~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N-~l~~i~~~~~~~l~~L~~  305 (353)
T 2z80_A          231 DTD-LDTFHFSEL---STGETNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRN-QLKSVPDGIFDRLTSLQK  305 (353)
T ss_dssp             SCB-CTTCCCC---------CCCCCCEEEEESCBCCHHHHHHHHHHHHTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCE
T ss_pred             CCc-ccccccccc---ccccccchhhccccccccccCcchhhhHHHHhcccCCCEEECCCC-CCCccCHHHHhcCCCCCE
Confidence            873 333221000   011233455555554431    12233333  6888888888887 578888875 67788888


Q ss_pred             EEe
Q 039808          325 IKA  327 (358)
Q Consensus       325 ~~~  327 (358)
                      ++-
T Consensus       306 L~L  308 (353)
T 2z80_A          306 IWL  308 (353)
T ss_dssp             EEC
T ss_pred             EEe
Confidence            765

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=99.59  E-value=5.2e-14  Score=128.56  Aligned_cols=257  Identities=15%  Similarity=0.145  Sum_probs=176.1

Q ss_pred             CccccEEEeeecCCCcceecccchhhhhhcCCCCCceEEEEccCchhHHH-HHhhhccccccccceEEEEEeCccccccc
Q 039808           25 LHALKTLSIVVYPGDKRWYKDVKSVVLEVCNLTELSSLCFHFPEIKLLEL-FLQRCVAWNAQCLTEFRIVVGHDIKNIVS  103 (358)
Q Consensus        25 L~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~~~~~~l~~l~~-~~~~~~~~~~~~L~~l~i~~~~~~~~~~~  103 (358)
                      ..+|+++++++ ..+..+       +..+  .++|++|++..+.++.++. .++     .+++|+.+.+.   .+  .+.
T Consensus        30 ~c~l~~l~~~~-~~l~~l-------p~~~--~~~l~~L~L~~n~i~~~~~~~~~-----~l~~L~~L~L~---~n--~l~   89 (330)
T 1xku_A           30 QCHLRVVQCSD-LGLEKV-------PKDL--PPDTALLDLQNNKITEIKDGDFK-----NLKNLHTLILI---NN--KIS   89 (330)
T ss_dssp             EEETTEEECTT-SCCCSC-------CCSC--CTTCCEEECCSSCCCCBCTTTTT-----TCTTCCEEECC---SS--CCC
T ss_pred             cCCCeEEEecC-CCcccc-------CccC--CCCCeEEECCCCcCCEeChhhhc-----cCCCCCEEECC---CC--cCC
Confidence            34789999887 333322       2222  2689999998777776543 122     56778877762   11  012


Q ss_pred             cC-CcccccccccCCceEEeeCCC--CChHHHHhhccCccEEEeccCCCCCccCcccccCccCCcEEEeecCCCceE-ec
Q 039808          104 RV-PDAVAFDYNKQGKCLRFINGE--NIPDAVLQILACCTAFYLDNHLHINSLSDFGVRSINGLKFCIISECPKIET-VV  179 (358)
Q Consensus       104 ~~-~~~~~l~~~~~L~~L~l~~~~--~~~~~~~~~l~~L~~L~l~~~~~~~~l~~~~l~~l~~L~~L~l~~~~~~~~-~~  179 (358)
                      .. |  ..+..+++|+.|.+.++.  .++..   ..++|+.|++.++ .+..+....+.++++|++|++++|..... +.
T Consensus        90 ~~~~--~~~~~l~~L~~L~Ls~n~l~~l~~~---~~~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~  163 (330)
T 1xku_A           90 KISP--GAFAPLVKLERLYLSKNQLKELPEK---MPKTLQELRVHEN-EITKVRKSVFNGLNQMIVVELGTNPLKSSGIE  163 (330)
T ss_dssp             CBCT--TTTTTCTTCCEEECCSSCCSBCCSS---CCTTCCEEECCSS-CCCBBCHHHHTTCTTCCEEECCSSCCCGGGBC
T ss_pred             eeCH--HHhcCCCCCCEEECCCCcCCccChh---hcccccEEECCCC-cccccCHhHhcCCccccEEECCCCcCCccCcC
Confidence            22 2  256677789999998764  33332   2478999999998 77777655688999999999998854321 11


Q ss_pred             CCCCccccCCCccceeecccccccccccccccCCCcCccccEEeEecCCCccccCchhhhccCCCccEEEEecCCccccc
Q 039808          180 DGKELTTVIFPSLENLSIHHLWNLTHICEGSVPNGSFARLRILSVHACPKLKFVFSSFMIHFMSNLEDLTVEDCPAIEEI  259 (358)
Q Consensus       180 ~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~l~~l~~L~~L~i~~c~~l~~i  259 (358)
                      .   .....+++|++|.++++. ++.++     ...+++|++|+++++. ++.+.+ ..+..+++|+.|+++++. +..+
T Consensus       164 ~---~~~~~l~~L~~L~l~~n~-l~~l~-----~~~~~~L~~L~l~~n~-l~~~~~-~~~~~l~~L~~L~Ls~n~-l~~~  231 (330)
T 1xku_A          164 N---GAFQGMKKLSYIRIADTN-ITTIP-----QGLPPSLTELHLDGNK-ITKVDA-ASLKGLNNLAKLGLSFNS-ISAV  231 (330)
T ss_dssp             T---TGGGGCTTCCEEECCSSC-CCSCC-----SSCCTTCSEEECTTSC-CCEECT-GGGTTCTTCCEEECCSSC-CCEE
T ss_pred             h---hhccCCCCcCEEECCCCc-cccCC-----ccccccCCEEECCCCc-CCccCH-HHhcCCCCCCEEECCCCc-Ccee
Confidence            1   125678999999998864 33332     2235899999999874 665544 356789999999999874 4443


Q ss_pred             cccccccccccccCCCcceeccccccccccccCC--CCCCccEEeeeCCcCCCccCCCCC-------CCCCeeEEEe
Q 039808          260 ISEGEIIDSGCTALPRLKKLTLHYLPGLVTIWSS--AWPSLEYVSFYDCPRLKNIGLGSN-------LKHSVMEIKA  327 (358)
Q Consensus       260 ~~~~~~~~~~~~~l~~L~~L~l~~c~~L~~~~~~--~~~~L~~L~i~~C~~L~~lP~~~~-------~~~~L~~~~~  327 (358)
                      +.      ..+..+++|+.|+++++ .++.++..  .+++|++|++++|+ ++.+|...-       ..+++..+.-
T Consensus       232 ~~------~~~~~l~~L~~L~L~~N-~l~~lp~~l~~l~~L~~L~l~~N~-i~~~~~~~f~~~~~~~~~~~l~~l~l  300 (330)
T 1xku_A          232 DN------GSLANTPHLRELHLNNN-KLVKVPGGLADHKYIQVVYLHNNN-ISAIGSNDFCPPGYNTKKASYSGVSL  300 (330)
T ss_dssp             CT------TTGGGSTTCCEEECCSS-CCSSCCTTTTTCSSCCEEECCSSC-CCCCCTTSSSCSSCCTTSCCCSEEEC
T ss_pred             Ch------hhccCCCCCCEEECCCC-cCccCChhhccCCCcCEEECCCCc-CCccChhhcCCcccccccccccceEe
Confidence            31      24678899999999887 68888776  89999999999984 888875532       1355666654

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=99.56  E-value=2.5e-14  Score=136.53  Aligned_cols=222  Identities=18%  Similarity=0.208  Sum_probs=129.7

Q ss_pred             cccceeccCCC---CccCCchhhcCccccEEEeeecCCCcceecccchhhhhhcCCCCCceEEEEccCchhHHHHHhhhc
Q 039808            4 SCNVEYVKMPP---QLISSGIISRLHALKTLSIVVYPGDKRWYKDVKSVVLEVCNLTELSSLCFHFPEIKLLELFLQRCV   80 (358)
Q Consensus         4 l~~L~~l~L~~---~~ip~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~~~~~~l~~l~~~~~~~~   80 (358)
                      ..++++|+|+.   ..++++.++++.+|++|++++ +.+...      .+..+.++++|++|++..+.+..++..     
T Consensus        74 ~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~-n~i~~~------~~~~~~~l~~L~~L~L~~n~l~~~~~~-----  141 (452)
T 3zyi_A           74 PSNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGR-NSIRQI------EVGAFNGLASLNTLELFDNWLTVIPSG-----  141 (452)
T ss_dssp             CTTCSEEECCSSCCCEECTTTTTTCTTCCEEECCS-SCCCEE------CTTTTTTCTTCCEEECCSSCCSBCCTT-----
T ss_pred             CCCccEEECcCCcCceECHHHcCCCCCCCEEECCC-CccCCc------ChhhccCcccCCEEECCCCcCCccChh-----
Confidence            35789999988   446666789999999999998 444321      235688999999999977777655421     


Q ss_pred             cccccccceEEEEEeCccccccccCCcccccccccCCceEEeeCCC--CChHHHHhhccCccEEEeccCCCCCccCcccc
Q 039808           81 AWNAQCLTEFRIVVGHDIKNIVSRVPDAVAFDYNKQGKCLRFINGE--NIPDAVLQILACCTAFYLDNHLHINSLSDFGV  158 (358)
Q Consensus        81 ~~~~~~L~~l~i~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~--~~~~~~~~~l~~L~~L~l~~~~~~~~l~~~~l  158 (358)
                                                   .+..+.+|+.|.+.++.  .++...+..+++|+.|++.++..+..++...+
T Consensus       142 -----------------------------~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~  192 (452)
T 3zyi_A          142 -----------------------------AFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAF  192 (452)
T ss_dssp             -----------------------------TSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTT
T ss_pred             -----------------------------hhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhc
Confidence                                         12222344445444432  22333344466666666666556666655456


Q ss_pred             cCccCCcEEEeecCCCceEecCCCCccccCCCccceeecccccccccccccccCCCcCccccEEeEecCCCccccCchhh
Q 039808          159 RSINGLKFCIISECPKIETVVDGKELTTVIFPSLENLSIHHLWNLTHICEGSVPNGSFARLRILSVHACPKLKFVFSSFM  238 (358)
Q Consensus       159 ~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~  238 (358)
                      .++++|++|++++|. +..++ .    ...+++|++|+++++.- ..+.  +..++.+++|++|++.++ ++..+.+ ..
T Consensus       193 ~~l~~L~~L~L~~n~-l~~~~-~----~~~l~~L~~L~Ls~N~l-~~~~--~~~~~~l~~L~~L~L~~n-~l~~~~~-~~  261 (452)
T 3zyi_A          193 EGLFNLKYLNLGMCN-IKDMP-N----LTPLVGLEELEMSGNHF-PEIR--PGSFHGLSSLKKLWVMNS-QVSLIER-NA  261 (452)
T ss_dssp             TTCTTCCEEECTTSC-CSSCC-C----CTTCTTCCEEECTTSCC-SEEC--GGGGTTCTTCCEEECTTS-CCCEECT-TT
T ss_pred             cCCCCCCEEECCCCc-ccccc-c----ccccccccEEECcCCcC-cccC--cccccCccCCCEEEeCCC-cCceECH-HH
Confidence            666677777776653 33221 1    34556677776666532 2211  122345666777777665 3444333 23


Q ss_pred             hccCCCccEEEEecCCccccccccccccccccccCCCcceeccccc
Q 039808          239 IHFMSNLEDLTVEDCPAIEEIISEGEIIDSGCTALPRLKKLTLHYL  284 (358)
Q Consensus       239 l~~l~~L~~L~i~~c~~l~~i~~~~~~~~~~~~~l~~L~~L~l~~c  284 (358)
                      +..+++|+.|+++++ .+..++.      ..+..+++|+.|+++++
T Consensus       262 ~~~l~~L~~L~L~~N-~l~~~~~------~~~~~l~~L~~L~L~~N  300 (452)
T 3zyi_A          262 FDGLASLVELNLAHN-NLSSLPH------DLFTPLRYLVELHLHHN  300 (452)
T ss_dssp             TTTCTTCCEEECCSS-CCSCCCT------TSSTTCTTCCEEECCSS
T ss_pred             hcCCCCCCEEECCCC-cCCccCh------HHhccccCCCEEEccCC
Confidence            456677777777665 3444331      12445666777776654

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=99.55  E-value=2.8e-14  Score=128.91  Aligned_cols=236  Identities=15%  Similarity=0.122  Sum_probs=145.7

Q ss_pred             eeccCCC---CccCCchhhcCccccEEEeeecCCCcceecccchhhh-hhcCCCCCceEEEEccCchhH---HHHHhhhc
Q 039808            8 EYVKMPP---QLISSGIISRLHALKTLSIVVYPGDKRWYKDVKSVVL-EVCNLTELSSLCFHFPEIKLL---ELFLQRCV   80 (358)
Q Consensus         8 ~~l~L~~---~~ip~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~-~l~~l~~L~~L~~~~~~l~~l---~~~~~~~~   80 (358)
                      +.++.+.   +.+|.++   ..+|++|++++ +.+.       .++. .+.++++|++|++..+.+...   +..+.   
T Consensus        10 ~~l~c~~~~l~~ip~~~---~~~l~~L~L~~-n~l~-------~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~---   75 (306)
T 2z66_A           10 TEIRCNSKGLTSVPTGI---PSSATRLELES-NKLQ-------SLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDF---   75 (306)
T ss_dssp             TEEECCSSCCSSCCSCC---CTTCCEEECCS-SCCC-------CCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHH---
T ss_pred             CEEEcCCCCcccCCCCC---CCCCCEEECCC-CccC-------ccCHhHhhccccCCEEECCCCccCcccCcccccc---
Confidence            4455554   4567754   36899999988 3332       2332 367889999999876665432   11111   


Q ss_pred             cccccccceEEEEEeCccccccccCCcccccccccCCceEEeeCCC--CChHHHHhhccCccEEEeccCCCCCccCc-cc
Q 039808           81 AWNAQCLTEFRIVVGHDIKNIVSRVPDAVAFDYNKQGKCLRFINGE--NIPDAVLQILACCTAFYLDNHLHINSLSD-FG  157 (358)
Q Consensus        81 ~~~~~~L~~l~i~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~--~~~~~~~~~l~~L~~L~l~~~~~~~~l~~-~~  157 (358)
                        .+++|                              +.|.+.++.  .++.. ...+++|+.|++.++ .+..++. ..
T Consensus        76 --~~~~L------------------------------~~L~Ls~n~i~~l~~~-~~~l~~L~~L~l~~n-~l~~~~~~~~  121 (306)
T 2z66_A           76 --GTTSL------------------------------KYLDLSFNGVITMSSN-FLGLEQLEHLDFQHS-NLKQMSEFSV  121 (306)
T ss_dssp             --SCSCC------------------------------CEEECCSCSEEEEEEE-EETCTTCCEEECTTS-EEESSTTTTT
T ss_pred             --ccccc------------------------------CEEECCCCccccChhh-cCCCCCCCEEECCCC-cccccccchh
Confidence              23334                              444443332  11111 223677777777776 5555543 24


Q ss_pred             ccCccCCcEEEeecCCCceEecCCCCccccCCCccceeecccccccccccccccCCCcCccccEEeEecCCCccccCchh
Q 039808          158 VRSINGLKFCIISECPKIETVVDGKELTTVIFPSLENLSIHHLWNLTHICEGSVPNGSFARLRILSVHACPKLKFVFSSF  237 (358)
Q Consensus       158 l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~  237 (358)
                      +..+++|++|++++|... .....   ....+++|++|.++++.-....  .+...+.+++|++|++++| .++.+.+ .
T Consensus       122 ~~~l~~L~~L~l~~n~l~-~~~~~---~~~~l~~L~~L~l~~n~l~~~~--~~~~~~~l~~L~~L~Ls~n-~l~~~~~-~  193 (306)
T 2z66_A          122 FLSLRNLIYLDISHTHTR-VAFNG---IFNGLSSLEVLKMAGNSFQENF--LPDIFTELRNLTFLDLSQC-QLEQLSP-T  193 (306)
T ss_dssp             TTTCTTCCEEECTTSCCE-ECSTT---TTTTCTTCCEEECTTCEEGGGE--ECSCCTTCTTCCEEECTTS-CCCEECT-T
T ss_pred             hhhccCCCEEECCCCcCC-ccchh---hcccCcCCCEEECCCCcccccc--chhHHhhCcCCCEEECCCC-CcCCcCH-H
Confidence            778888999998887533 22222   1456788888888876543311  1233456789999999887 4555544 3


Q ss_pred             hhccCCCccEEEEecCCccccccccccccccccccCCCcceeccccccccccccCC---CC-CCccEEeeeCCc
Q 039808          238 MIHFMSNLEDLTVEDCPAIEEIISEGEIIDSGCTALPRLKKLTLHYLPGLVTIWSS---AW-PSLEYVSFYDCP  307 (358)
Q Consensus       238 ~l~~l~~L~~L~i~~c~~l~~i~~~~~~~~~~~~~l~~L~~L~l~~c~~L~~~~~~---~~-~~L~~L~i~~C~  307 (358)
                      .+..+++|+.|+++++. +..++.      ..+..+++|+.|+++++ .++.....   .+ ++|++|++++++
T Consensus       194 ~~~~l~~L~~L~L~~N~-l~~~~~------~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~~~~~L~~L~L~~N~  259 (306)
T 2z66_A          194 AFNSLSSLQVLNMSHNN-FFSLDT------FPYKCLNSLQVLDYSLN-HIMTSKKQELQHFPSSLAFLNLTQND  259 (306)
T ss_dssp             TTTTCTTCCEEECTTSC-CSBCCS------GGGTTCTTCCEEECTTS-CCCBCSSSSCCCCCTTCCEEECTTCC
T ss_pred             HhcCCCCCCEEECCCCc-cCccCh------hhccCcccCCEeECCCC-CCcccCHHHHHhhhccCCEEEccCCC
Confidence            45788999999998874 433331      24567889999999877 45554443   55 489999999875

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=99.55  E-value=3.6e-14  Score=134.91  Aligned_cols=63  Identities=16%  Similarity=0.186  Sum_probs=48.0

Q ss_pred             cccceeccCCC---CccCCchhhcCccccEEEeeecCCCcceecccchhhhhhcCCCCCceEEEEccCchhHH
Q 039808            4 SCNVEYVKMPP---QLISSGIISRLHALKTLSIVVYPGDKRWYKDVKSVVLEVCNLTELSSLCFHFPEIKLLE   73 (358)
Q Consensus         4 l~~L~~l~L~~---~~ip~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~~~~~~l~~l~   73 (358)
                      ..++++|+|+.   ..++...++++.+|++|++++ +.+...      ....+.++++|++|++..+.++.++
T Consensus        63 ~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~-n~i~~i------~~~~~~~l~~L~~L~L~~n~l~~~~  128 (440)
T 3zyj_A           63 STNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSR-NHIRTI------EIGAFNGLANLNTLELFDNRLTTIP  128 (440)
T ss_dssp             CTTCSEEECCSCCCCEECTTTTSSCSSCCEEECCS-SCCCEE------CGGGGTTCSSCCEEECCSSCCSSCC
T ss_pred             CCCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCC-CcCCcc------ChhhccCCccCCEEECCCCcCCeeC
Confidence            35788999987   446766789999999999998 444322      1356889999999999877776654

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=99.53  E-value=6.7e-15  Score=133.86  Aligned_cols=269  Identities=12%  Similarity=0.050  Sum_probs=162.3

Q ss_pred             ceeccCCCCcc---CCchhhcCccccEEEeeecCCCcceecccchhhhhhcCCCCCceEEEEccCchhHHHHHhhhcccc
Q 039808            7 VEYVKMPPQLI---SSGIISRLHALKTLSIVVYPGDKRWYKDVKSVVLEVCNLTELSSLCFHFPEIKLLELFLQRCVAWN   83 (358)
Q Consensus         7 L~~l~L~~~~i---p~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~~~~~~l~~l~~~~~~~~~~~   83 (358)
                      ++..+++...+   +..++..+++|++|++++ +.+..      ..+..+.++++|++|++..+.+...+. +.     .
T Consensus        12 l~i~~ls~~~l~~~~~~~~~~~~~L~~L~L~~-n~l~~------~~~~~~~~l~~L~~L~Ls~n~l~~~~~-~~-----~   78 (317)
T 3o53_A           12 YKIEKVTDSSLKQALASLRQSAWNVKELDLSG-NPLSQ------ISAADLAPFTKLELLNLSSNVLYETLD-LE-----S   78 (317)
T ss_dssp             EEEESCCTTTHHHHHHHHHTTGGGCSEEECTT-SCCCC------CCHHHHTTCTTCCEEECTTSCCEEEEE-ET-----T
T ss_pred             eeEeeccccchhhhHHHHhccCCCCCEEECcC-CccCc------CCHHHhhCCCcCCEEECCCCcCCcchh-hh-----h
Confidence            45555555333   334455566788888877 33321      123457777888888876665543321 12     4


Q ss_pred             ccccceEEEEEeCccccccccCCcccccccccCCceEEeeCCCCChHHHHhhccCccEEEeccCCCCCccCcccccCccC
Q 039808           84 AQCLTEFRIVVGHDIKNIVSRVPDAVAFDYNKQGKCLRFINGENIPDAVLQILACCTAFYLDNHLHINSLSDFGVRSING  163 (358)
Q Consensus        84 ~~~L~~l~i~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~l~~~~l~~l~~  163 (358)
                      +++|+.+.+.   .+  .+      ..+.....++.|.+.++.- .......+++|+.|++.++ .+..+....++.+++
T Consensus        79 l~~L~~L~Ls---~n--~l------~~l~~~~~L~~L~l~~n~l-~~~~~~~~~~L~~L~l~~N-~l~~~~~~~~~~l~~  145 (317)
T 3o53_A           79 LSTLRTLDLN---NN--YV------QELLVGPSIETLHAANNNI-SRVSCSRGQGKKNIYLANN-KITMLRDLDEGCRSR  145 (317)
T ss_dssp             CTTCCEEECC---SS--EE------EEEEECTTCCEEECCSSCC-SEEEECCCSSCEEEECCSS-CCCSGGGBCTGGGSS
T ss_pred             cCCCCEEECc---CC--cc------ccccCCCCcCEEECCCCcc-CCcCccccCCCCEEECCCC-CCCCccchhhhccCC
Confidence            5566666541   11  01      1222234777777766531 1111123678888888888 676666556788889


Q ss_pred             CcEEEeecCCCceEecCCCCccccCCCccceeecccccccccccccccCCCcCccccEEeEecCCCccccCchhhhccCC
Q 039808          164 LKFCIISECPKIETVVDGKELTTVIFPSLENLSIHHLWNLTHICEGSVPNGSFARLRILSVHACPKLKFVFSSFMIHFMS  243 (358)
Q Consensus       164 L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~l~~l~  243 (358)
                      |++|++++|......+...   ...+++|++|+++++. ++.+.    ....+++|++|+++++ +++.+++.  +..++
T Consensus       146 L~~L~Ls~N~l~~~~~~~~---~~~l~~L~~L~L~~N~-l~~~~----~~~~l~~L~~L~Ls~N-~l~~l~~~--~~~l~  214 (317)
T 3o53_A          146 VQYLDLKLNEIDTVNFAEL---AASSDTLEHLNLQYNF-IYDVK----GQVVFAKLKTLDLSSN-KLAFMGPE--FQSAA  214 (317)
T ss_dssp             EEEEECTTSCCCEEEGGGG---GGGTTTCCEEECTTSC-CCEEE----CCCCCTTCCEEECCSS-CCCEECGG--GGGGT
T ss_pred             CCEEECCCCCCCcccHHHH---hhccCcCCEEECCCCc-Ccccc----cccccccCCEEECCCC-cCCcchhh--hcccC
Confidence            9999998875443322220   1356888888888864 33331    1224788899988886 45655332  56788


Q ss_pred             CccEEEEecCCccccccccccccccccccCCCcceecccccccc-ccccCC--CCCCccEEeeeCCcCCCccCCCCCCCC
Q 039808          244 NLEDLTVEDCPAIEEIISEGEIIDSGCTALPRLKKLTLHYLPGL-VTIWSS--AWPSLEYVSFYDCPRLKNIGLGSNLKH  320 (358)
Q Consensus       244 ~L~~L~i~~c~~l~~i~~~~~~~~~~~~~l~~L~~L~l~~c~~L-~~~~~~--~~~~L~~L~i~~C~~L~~lP~~~~~~~  320 (358)
                      +|+.|+++++ .+..++       ..+..+++|+.|++++++-. ..++..  .+++|+.+++.+++.++..+......+
T Consensus       215 ~L~~L~L~~N-~l~~l~-------~~~~~l~~L~~L~l~~N~~~~~~~~~~~~~~~~L~~l~l~~~~~l~~~~~~~~~~~  286 (317)
T 3o53_A          215 GVTWISLRNN-KLVLIE-------KALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQNEEECTVP  286 (317)
T ss_dssp             TCSEEECTTS-CCCEEC-------TTCCCCTTCCEEECTTCCCBHHHHHHHHHTCHHHHHHHHHHHHHHHSSSSCCCSST
T ss_pred             cccEEECcCC-cccchh-------hHhhcCCCCCEEEccCCCccCcCHHHHHhccccceEEECCCchhccCCchhccCCC
Confidence            8899988886 555555       34667888888888877433 122222  778888888887777766654444333

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=99.53  E-value=1.9e-13  Score=124.92  Aligned_cols=257  Identities=17%  Similarity=0.137  Sum_probs=172.6

Q ss_pred             ccccEEEeeecCCCcceecccchhhhhhcCCCCCceEEEEccCchhHHH-HHhhhccccccccceEEEEEeCcccccccc
Q 039808           26 HALKTLSIVVYPGDKRWYKDVKSVVLEVCNLTELSSLCFHFPEIKLLEL-FLQRCVAWNAQCLTEFRIVVGHDIKNIVSR  104 (358)
Q Consensus        26 ~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~~~~~~l~~l~~-~~~~~~~~~~~~L~~l~i~~~~~~~~~~~~  104 (358)
                      -+|+++++++ ..+.       .++..+  .++|++|++..+.+..++. .+.     .+++|+.+.+.   .+  .+..
T Consensus        33 c~l~~l~~~~-~~l~-------~ip~~~--~~~l~~L~l~~n~i~~~~~~~~~-----~l~~L~~L~L~---~n--~l~~   92 (332)
T 2ft3_A           33 CHLRVVQCSD-LGLK-------AVPKEI--SPDTTLLDLQNNDISELRKDDFK-----GLQHLYALVLV---NN--KISK   92 (332)
T ss_dssp             EETTEEECCS-SCCS-------SCCSCC--CTTCCEEECCSSCCCEECTTTTT-----TCTTCCEEECC---SS--CCCE
T ss_pred             ccCCEEECCC-CCcc-------ccCCCC--CCCCeEEECCCCcCCccCHhHhh-----CCCCCcEEECC---CC--ccCc
Confidence            3799999988 3333       223333  3689999998777766532 222     56777777762   11  0122


Q ss_pred             CCcccccccccCCceEEeeCCC--CChHHHHhhccCccEEEeccCCCCCccCcccccCccCCcEEEeecCCCceE-ecCC
Q 039808          105 VPDAVAFDYNKQGKCLRFINGE--NIPDAVLQILACCTAFYLDNHLHINSLSDFGVRSINGLKFCIISECPKIET-VVDG  181 (358)
Q Consensus       105 ~~~~~~l~~~~~L~~L~l~~~~--~~~~~~~~~l~~L~~L~l~~~~~~~~l~~~~l~~l~~L~~L~l~~~~~~~~-~~~~  181 (358)
                      .+ ...+..+.+|+.|.+.++.  .++..+   .++|+.|++.++ .+..++...+.++++|++|++++|..... ....
T Consensus        93 ~~-~~~~~~l~~L~~L~L~~n~l~~l~~~~---~~~L~~L~l~~n-~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~  167 (332)
T 2ft3_A           93 IH-EKAFSPLRKLQKLYISKNHLVEIPPNL---PSSLVELRIHDN-RIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPG  167 (332)
T ss_dssp             EC-GGGSTTCTTCCEEECCSSCCCSCCSSC---CTTCCEEECCSS-CCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTT
T ss_pred             cC-HhHhhCcCCCCEEECCCCcCCccCccc---cccCCEEECCCC-ccCccCHhHhCCCccCCEEECCCCccccCCCCcc
Confidence            11 1356667789999998764  344332   378999999998 77777665688999999999998854321 1111


Q ss_pred             CCccccCCCccceeecccccccccccccccCCCcCccccEEeEecCCCccccCchhhhccCCCccEEEEecCCccccccc
Q 039808          182 KELTTVIFPSLENLSIHHLWNLTHICEGSVPNGSFARLRILSVHACPKLKFVFSSFMIHFMSNLEDLTVEDCPAIEEIIS  261 (358)
Q Consensus       182 ~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~l~~l~~L~~L~i~~c~~l~~i~~  261 (358)
                         ....+ +|++|+++++. ++.++     ...+++|++|+++++ .++.+.+ ..+..+++|+.|+++++ .+..++.
T Consensus       168 ---~~~~l-~L~~L~l~~n~-l~~l~-----~~~~~~L~~L~l~~n-~i~~~~~-~~l~~l~~L~~L~L~~N-~l~~~~~  234 (332)
T 2ft3_A          168 ---AFDGL-KLNYLRISEAK-LTGIP-----KDLPETLNELHLDHN-KIQAIEL-EDLLRYSKLYRLGLGHN-QIRMIEN  234 (332)
T ss_dssp             ---SSCSC-CCSCCBCCSSB-CSSCC-----SSSCSSCSCCBCCSS-CCCCCCT-TSSTTCTTCSCCBCCSS-CCCCCCT
T ss_pred             ---cccCC-ccCEEECcCCC-CCccC-----ccccCCCCEEECCCC-cCCccCH-HHhcCCCCCCEEECCCC-cCCcCCh
Confidence               12333 89999998864 34432     223479999999987 4555433 34678999999999987 4444331


Q ss_pred             cccccccccccCCCcceeccccccccccccCC--CCCCccEEeeeCCcCCCccCCCCC-C------CCCeeEEEec
Q 039808          262 EGEIIDSGCTALPRLKKLTLHYLPGLVTIWSS--AWPSLEYVSFYDCPRLKNIGLGSN-L------KHSVMEIKAE  328 (358)
Q Consensus       262 ~~~~~~~~~~~l~~L~~L~l~~c~~L~~~~~~--~~~~L~~L~i~~C~~L~~lP~~~~-~------~~~L~~~~~~  328 (358)
                            ..+..+++|+.|+++++ .++.+|..  .+++|++|+++++ .++.+|...- .      .++|+.+.-.
T Consensus       235 ------~~~~~l~~L~~L~L~~N-~l~~lp~~l~~l~~L~~L~l~~N-~l~~~~~~~~~~~~~~~~~~~l~~L~l~  302 (332)
T 2ft3_A          235 ------GSLSFLPTLRELHLDNN-KLSRVPAGLPDLKLLQVVYLHTN-NITKVGVNDFCPVGFGVKRAYYNGISLF  302 (332)
T ss_dssp             ------TGGGGCTTCCEEECCSS-CCCBCCTTGGGCTTCCEEECCSS-CCCBCCTTSSSCSSCCSSSCCBSEEECC
T ss_pred             ------hHhhCCCCCCEEECCCC-cCeecChhhhcCccCCEEECCCC-CCCccChhHccccccccccccccceEee
Confidence                  24678899999999877 78888877  8999999999997 4888875431 1      3456666543

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=99.52  E-value=5.3e-14  Score=129.78  Aligned_cols=246  Identities=13%  Similarity=0.075  Sum_probs=151.6

Q ss_pred             cccceeccCCC---CccCCchhhcCccccEEEeeecCCCcceecccchhhhhhcCCCCCceEEEEccCchhHHHH-Hhhh
Q 039808            4 SCNVEYVKMPP---QLISSGIISRLHALKTLSIVVYPGDKRWYKDVKSVVLEVCNLTELSSLCFHFPEIKLLELF-LQRC   79 (358)
Q Consensus         4 l~~L~~l~L~~---~~ip~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~~~~~~l~~l~~~-~~~~   79 (358)
                      ..+|++|+++.   +.+|.+.++++++|++|++++ +.+...      .+..+.++++|++|++..+.++.++.. ++  
T Consensus        51 ~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~-n~l~~~------~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~--  121 (353)
T 2z80_A           51 TEAVKSLDLSNNRITYISNSDLQRCVNLQALVLTS-NGINTI------EEDSFSSLGSLEHLDLSYNYLSNLSSSWFK--  121 (353)
T ss_dssp             CTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTT-SCCCEE------CTTTTTTCTTCCEEECCSSCCSSCCHHHHT--
T ss_pred             cccCcEEECCCCcCcccCHHHhccCCCCCEEECCC-CccCcc------CHhhcCCCCCCCEEECCCCcCCcCCHhHhC--
Confidence            35789999988   457776789999999999998 344321      134688999999999988877766542 22  


Q ss_pred             ccccccccceEEEEEeCccccccccCCcccccccccCCceEEeeCCC--CChH-HHHhhccCccEEEeccCCCCCccCcc
Q 039808           80 VAWNAQCLTEFRIVVGHDIKNIVSRVPDAVAFDYNKQGKCLRFINGE--NIPD-AVLQILACCTAFYLDNHLHINSLSDF  156 (358)
Q Consensus        80 ~~~~~~~L~~l~i~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~--~~~~-~~~~~l~~L~~L~l~~~~~~~~l~~~  156 (358)
                         .+++|+.                              |.+.++.  .++. .....+++|+.|++.++..+..+...
T Consensus       122 ---~l~~L~~------------------------------L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~  168 (353)
T 2z80_A          122 ---PLSSLTF------------------------------LNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRK  168 (353)
T ss_dssp             ---TCTTCSE------------------------------EECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTT
T ss_pred             ---CCccCCE------------------------------EECCCCCCcccCchhhhccCCCCcEEECCCCccccccCHH
Confidence               2344444                              4443331  2222 22344667777777776445555444


Q ss_pred             cccCccCCcEEEeecCCCceEecCCCCccccCCCccceeecccccccccccccccCCCcCccccEEeEecCCCccccCch
Q 039808          157 GVRSINGLKFCIISECPKIETVVDGKELTTVIFPSLENLSIHHLWNLTHICEGSVPNGSFARLRILSVHACPKLKFVFSS  236 (358)
Q Consensus       157 ~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~  236 (358)
                      .++++++|++|++++|......+..    ...+++|++|+++++. ++.++..  ..+.+++|++|+++++. ++...+.
T Consensus       169 ~~~~l~~L~~L~l~~n~l~~~~~~~----l~~l~~L~~L~l~~n~-l~~~~~~--~~~~~~~L~~L~L~~n~-l~~~~~~  240 (353)
T 2z80_A          169 DFAGLTFLEELEIDASDLQSYEPKS----LKSIQNVSHLILHMKQ-HILLLEI--FVDVTSSVECLELRDTD-LDTFHFS  240 (353)
T ss_dssp             TTTTCCEEEEEEEEETTCCEECTTT----TTTCSEEEEEEEECSC-STTHHHH--HHHHTTTEEEEEEESCB-CTTCCCC
T ss_pred             HccCCCCCCEEECCCCCcCccCHHH----HhccccCCeecCCCCc-cccchhh--hhhhcccccEEECCCCc-ccccccc
Confidence            5777778888888777543322222    4566777888777654 2332111  11236778888887763 3332221


Q ss_pred             h--hhccCCCccEEEEecCCcc----ccccccccccccccccCCCcceeccccccccccccCC---CCCCccEEeeeCCc
Q 039808          237 F--MIHFMSNLEDLTVEDCPAI----EEIISEGEIIDSGCTALPRLKKLTLHYLPGLVTIWSS---AWPSLEYVSFYDCP  307 (358)
Q Consensus       237 ~--~l~~l~~L~~L~i~~c~~l----~~i~~~~~~~~~~~~~l~~L~~L~l~~c~~L~~~~~~---~~~~L~~L~i~~C~  307 (358)
                      .  .....+.++.+++.++.--    ..++       ..+..+++|+.|+++++ .++.++..   .+++|++|++++++
T Consensus       241 ~l~~~~~~~~l~~l~L~~~~l~~~~l~~l~-------~~l~~l~~L~~L~Ls~N-~l~~i~~~~~~~l~~L~~L~L~~N~  312 (353)
T 2z80_A          241 ELSTGETNSLIKKFTFRNVKITDESLFQVM-------KLLNQISGLLELEFSRN-QLKSVPDGIFDRLTSLQKIWLHTNP  312 (353)
T ss_dssp             ------CCCCCCEEEEESCBCCHHHHHHHH-------HHHHTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred             ccccccccchhhccccccccccCcchhhhH-------HHHhcccCCCEEECCCC-CCCccCHHHHhcCCCCCEEEeeCCC
Confidence            1  1234566777777765311    1122       23567888888888776 67777765   67888888888875

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=99.50  E-value=1.7e-13  Score=123.70  Aligned_cols=35  Identities=9%  Similarity=0.063  Sum_probs=15.7

Q ss_pred             ccCccEEEeccCCCCCccCcccccCccCCcEEEeecC
Q 039808          136 LACCTAFYLDNHLHINSLSDFGVRSINGLKFCIISEC  172 (358)
Q Consensus       136 l~~L~~L~l~~~~~~~~l~~~~l~~l~~L~~L~l~~~  172 (358)
                      +++|+.|++.++ .+..++. .+..+++|++|++++|
T Consensus        77 ~~~L~~L~Ls~n-~i~~l~~-~~~~l~~L~~L~l~~n  111 (306)
T 2z66_A           77 TTSLKYLDLSFN-GVITMSS-NFLGLEQLEHLDFQHS  111 (306)
T ss_dssp             CSCCCEEECCSC-SEEEEEE-EEETCTTCCEEECTTS
T ss_pred             ccccCEEECCCC-ccccChh-hcCCCCCCCEEECCCC
Confidence            444555555444 3333332 2444445555555443

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=99.49  E-value=6.2e-14  Score=125.34  Aligned_cols=215  Identities=17%  Similarity=0.175  Sum_probs=100.9

Q ss_pred             eccCCC---CccCCchhhcCccccEEEeeecCCCcceecccchhhhhhcCCCCCceEEEEccCchhHH-HHHhhhccccc
Q 039808            9 YVKMPP---QLISSGIISRLHALKTLSIVVYPGDKRWYKDVKSVVLEVCNLTELSSLCFHFPEIKLLE-LFLQRCVAWNA   84 (358)
Q Consensus         9 ~l~L~~---~~ip~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~~~~~~l~~l~-~~~~~~~~~~~   84 (358)
                      .++.+.   +.+|.++   ..+|++|++++ +.+...      ....+.++++|++|++..+.+..+. ..+.     .+
T Consensus        15 ~~~c~~~~l~~ip~~~---~~~l~~L~l~~-n~i~~~------~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~-----~l   79 (285)
T 1ozn_A           15 TTSCPQQGLQAVPVGI---PAASQRIFLHG-NRISHV------PAASFRACRNLTILWLHSNVLARIDAAAFT-----GL   79 (285)
T ss_dssp             EEECCSSCCSSCCTTC---CTTCSEEECTT-SCCCEE------CTTTTTTCTTCCEEECCSSCCCEECTTTTT-----TC
T ss_pred             EEEcCcCCcccCCcCC---CCCceEEEeeC-CcCCcc------CHHHcccCCCCCEEECCCCccceeCHhhcC-----Cc
Confidence            444544   4456543   46788888887 333221      1235778888888888666555442 1111     33


Q ss_pred             cccceEEEEEeCccccccccCCcccccccccCCceEEeeCCC--CChHHHHhhccCccEEEeccCCCCCccCcccccCcc
Q 039808           85 QCLTEFRIVVGHDIKNIVSRVPDAVAFDYNKQGKCLRFINGE--NIPDAVLQILACCTAFYLDNHLHINSLSDFGVRSIN  162 (358)
Q Consensus        85 ~~L~~l~i~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~--~~~~~~~~~l~~L~~L~l~~~~~~~~l~~~~l~~l~  162 (358)
                      ++|+.+.+.   .+ ..+...+ ...+..+.+|+.|.+.++.  .++......+++|+.|++.++ .+..++...+++++
T Consensus        80 ~~L~~L~l~---~n-~~l~~~~-~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~  153 (285)
T 1ozn_A           80 ALLEQLDLS---DN-AQLRSVD-PATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDN-ALQALPDDTFRDLG  153 (285)
T ss_dssp             TTCCEEECC---SC-TTCCCCC-TTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCT
T ss_pred             cCCCEEeCC---CC-CCccccC-HHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCC-cccccCHhHhccCC
Confidence            444444431   11 0001110 0133334455555555442  232333344555666666555 44444433355555


Q ss_pred             CCcEEEeecCCCceEecCCCCccccCCCccceeecccccccccccccccCCCcCccccEEeEecCCCccccCchhhhccC
Q 039808          163 GLKFCIISECPKIETVVDGKELTTVIFPSLENLSIHHLWNLTHICEGSVPNGSFARLRILSVHACPKLKFVFSSFMIHFM  242 (358)
Q Consensus       163 ~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~l~~l  242 (358)
                      +|++|++++| .+..++...   ...+++|++|+++++.- ..+.  +...+.+++|++|+++++ .++.+++ ..+..+
T Consensus       154 ~L~~L~l~~n-~l~~~~~~~---~~~l~~L~~L~l~~n~l-~~~~--~~~~~~l~~L~~L~l~~n-~l~~~~~-~~~~~l  224 (285)
T 1ozn_A          154 NLTHLFLHGN-RISSVPERA---FRGLHSLDRLLLHQNRV-AHVH--PHAFRDLGRLMTLYLFAN-NLSALPT-EALAPL  224 (285)
T ss_dssp             TCCEEECCSS-CCCEECTTT---TTTCTTCCEEECCSSCC-CEEC--TTTTTTCTTCCEEECCSS-CCSCCCH-HHHTTC
T ss_pred             CccEEECCCC-cccccCHHH---hcCccccCEEECCCCcc-cccC--HhHccCcccccEeeCCCC-cCCcCCH-HHcccC
Confidence            6666666555 233332221   33455555555555432 2110  112334455555555554 2333322 234555


Q ss_pred             CCccEEEEecC
Q 039808          243 SNLEDLTVEDC  253 (358)
Q Consensus       243 ~~L~~L~i~~c  253 (358)
                      ++|+.|+++++
T Consensus       225 ~~L~~L~l~~N  235 (285)
T 1ozn_A          225 RALQYLRLNDN  235 (285)
T ss_dssp             TTCCEEECCSS
T ss_pred             cccCEEeccCC
Confidence            55555555544

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=99.48  E-value=1.2e-13  Score=125.64  Aligned_cols=36  Identities=8%  Similarity=-0.084  Sum_probs=23.1

Q ss_pred             hhcCCCCCceEEEEccCchhHH-HHHhhhccccccccceEEE
Q 039808           52 EVCNLTELSSLCFHFPEIKLLE-LFLQRCVAWNAQCLTEFRI   92 (358)
Q Consensus        52 ~l~~l~~L~~L~~~~~~l~~l~-~~~~~~~~~~~~~L~~l~i   92 (358)
                      ....+++|++|++..+.+..++ ..+.     .+++|+.+.+
T Consensus        29 ~~~~~~~L~~L~L~~n~l~~~~~~~~~-----~l~~L~~L~L   65 (317)
T 3o53_A           29 LRQSAWNVKELDLSGNPLSQISAADLA-----PFTKLELLNL   65 (317)
T ss_dssp             HHTTGGGCSEEECTTSCCCCCCHHHHT-----TCTTCCEEEC
T ss_pred             HhccCCCCCEEECcCCccCcCCHHHhh-----CCCcCCEEEC
Confidence            3567789999999777776554 2233     4555555554

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=99.48  E-value=2e-13  Score=123.85  Aligned_cols=194  Identities=11%  Similarity=0.011  Sum_probs=134.5

Q ss_pred             ccccccCCceEEeeCCC--CChHHHHhhccCccEEEeccCCCCC-ccCcccccCccCCcEEEeecCCCceEecCCCCccc
Q 039808          110 AFDYNKQGKCLRFINGE--NIPDAVLQILACCTAFYLDNHLHIN-SLSDFGVRSINGLKFCIISECPKIETVVDGKELTT  186 (358)
Q Consensus       110 ~l~~~~~L~~L~l~~~~--~~~~~~~~~l~~L~~L~l~~~~~~~-~l~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~  186 (358)
                      .+..+++|+.|.+.++.  +..+.....+++|+.|++.++ .+. .++. .++.+++|++|++++|.....++..    .
T Consensus        96 ~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N-~l~~~~p~-~~~~l~~L~~L~L~~N~l~~~~p~~----l  169 (313)
T 1ogq_A           96 AIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYN-ALSGTLPP-SISSLPNLVGITFDGNRISGAIPDS----Y  169 (313)
T ss_dssp             GGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSS-EEESCCCG-GGGGCTTCCEEECCSSCCEEECCGG----G
T ss_pred             hHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCEEeCCCC-ccCCcCCh-HHhcCCCCCeEECcCCcccCcCCHH----H
Confidence            34455577777776653  122234556899999999998 555 4444 5889999999999998654455443    5


Q ss_pred             cCCC-ccceeecccccccccccccccCCCcCccccEEeEecCCCccccCchhhhccCCCccEEEEecCCccccccccccc
Q 039808          187 VIFP-SLENLSIHHLWNLTHICEGSVPNGSFARLRILSVHACPKLKFVFSSFMIHFMSNLEDLTVEDCPAIEEIISEGEI  265 (358)
Q Consensus       187 ~~l~-~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~l~~l~~L~~L~i~~c~~l~~i~~~~~~  265 (358)
                      ..++ +|++|+++++.-...+   +...+.++ |++|+++++. ++...+ ..+..+++|+.|+++++.--..++     
T Consensus       170 ~~l~~~L~~L~L~~N~l~~~~---~~~~~~l~-L~~L~Ls~N~-l~~~~~-~~~~~l~~L~~L~L~~N~l~~~~~-----  238 (313)
T 1ogq_A          170 GSFSKLFTSMTISRNRLTGKI---PPTFANLN-LAFVDLSRNM-LEGDAS-VLFGSDKNTQKIHLAKNSLAFDLG-----  238 (313)
T ss_dssp             GCCCTTCCEEECCSSEEEEEC---CGGGGGCC-CSEEECCSSE-EEECCG-GGCCTTSCCSEEECCSSEECCBGG-----
T ss_pred             hhhhhcCcEEECcCCeeeccC---ChHHhCCc-ccEEECcCCc-ccCcCC-HHHhcCCCCCEEECCCCceeeecC-----
Confidence            5666 9999999887544333   22233444 9999999874 444433 456789999999999875433333     


Q ss_pred             cccccccCCCcceeccccccccc-cccCC--CCCCccEEeeeCCcCCCccCCCCCCCCCeeEE
Q 039808          266 IDSGCTALPRLKKLTLHYLPGLV-TIWSS--AWPSLEYVSFYDCPRLKNIGLGSNLKHSVMEI  325 (358)
Q Consensus       266 ~~~~~~~l~~L~~L~l~~c~~L~-~~~~~--~~~~L~~L~i~~C~~L~~lP~~~~~~~~L~~~  325 (358)
                         ....+++|+.|+++++ .++ .++..  .+++|++|++++|.--..+|.. ..+++|+.+
T Consensus       239 ---~~~~l~~L~~L~Ls~N-~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~-~~l~~L~~l  296 (313)
T 1ogq_A          239 ---KVGLSKNLNGLDLRNN-RIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQG-GNLQRFDVS  296 (313)
T ss_dssp             ---GCCCCTTCCEEECCSS-CCEECCCGGGGGCTTCCEEECCSSEEEEECCCS-TTGGGSCGG
T ss_pred             ---cccccCCCCEEECcCC-cccCcCChHHhcCcCCCEEECcCCcccccCCCC-ccccccChH
Confidence               3667899999999887 455 55555  7899999999999755577776 455555543

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=99.46  E-value=1.4e-12  Score=113.49  Aligned_cols=193  Identities=12%  Similarity=0.111  Sum_probs=139.5

Q ss_pred             CCceEEeeCCC--CChHHHHhhccCccEEEeccCCCCCccCcccccCccCCcEEEeecCCCceEecCCCCccccCCCccc
Q 039808          116 QGKCLRFINGE--NIPDAVLQILACCTAFYLDNHLHINSLSDFGVRSINGLKFCIISECPKIETVVDGKELTTVIFPSLE  193 (358)
Q Consensus       116 ~L~~L~l~~~~--~~~~~~~~~l~~L~~L~l~~~~~~~~l~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~  193 (358)
                      .++.|.+.++.  .++......+++|+.|++.++..+..++...+.++++|++|++++|..+..++...   ...+++|+
T Consensus        32 ~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~---f~~l~~L~  108 (239)
T 2xwt_C           32 STQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDA---LKELPLLK  108 (239)
T ss_dssp             TCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTS---EECCTTCC
T ss_pred             cccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHH---hCCCCCCC
Confidence            67778877764  44444455688999999998844778876668899999999999855677665432   45678999


Q ss_pred             eeecccccccccccccccCCCcCcccc---EEeEecCCCccccCchhhhccCCCcc-EEEEecCCccccccccccccccc
Q 039808          194 NLSIHHLWNLTHICEGSVPNGSFARLR---ILSVHACPKLKFVFSSFMIHFMSNLE-DLTVEDCPAIEEIISEGEIIDSG  269 (358)
Q Consensus       194 ~L~l~~~~~l~~~~~~~~~~~~~~~L~---~L~l~~c~~l~~l~~~~~l~~l~~L~-~L~i~~c~~l~~i~~~~~~~~~~  269 (358)
                      +|++.++. ++.++.    .+.+++|+   +|++++++.++.+++ ..+..+++|+ .|+++++ .+..++       ..
T Consensus       109 ~L~l~~n~-l~~lp~----~~~l~~L~~L~~L~l~~N~~l~~i~~-~~~~~l~~L~~~L~l~~n-~l~~i~-------~~  174 (239)
T 2xwt_C          109 FLGIFNTG-LKMFPD----LTKVYSTDIFFILEITDNPYMTSIPV-NAFQGLCNETLTLKLYNN-GFTSVQ-------GY  174 (239)
T ss_dssp             EEEEEEEC-CCSCCC----CTTCCBCCSEEEEEEESCTTCCEECT-TTTTTTBSSEEEEECCSC-CCCEEC-------TT
T ss_pred             EEeCCCCC-Cccccc----cccccccccccEEECCCCcchhhcCc-ccccchhcceeEEEcCCC-CCcccC-------Hh
Confidence            99998864 344421    44567777   999999877887644 3467889999 9999876 455555       12


Q ss_pred             cccCCCcceeccccccccccccCC---CC-CCccEEeeeCCcCCCccCCCCCCCCCeeEEEec
Q 039808          270 CTALPRLKKLTLHYLPGLVTIWSS---AW-PSLEYVSFYDCPRLKNIGLGSNLKHSVMEIKAE  328 (358)
Q Consensus       270 ~~~l~~L~~L~l~~c~~L~~~~~~---~~-~~L~~L~i~~C~~L~~lP~~~~~~~~L~~~~~~  328 (358)
                      ....++|+.|+++++..++.++..   .+ ++|+.|+++++ .++.+|..  .+++|+.+...
T Consensus       175 ~~~~~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N-~l~~l~~~--~~~~L~~L~l~  234 (239)
T 2xwt_C          175 AFNGTKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQT-SVTALPSK--GLEHLKELIAR  234 (239)
T ss_dssp             TTTTCEEEEEECTTCTTCCEECTTTTTTCSBCCSEEECTTC-CCCCCCCT--TCTTCSEEECT
T ss_pred             hcCCCCCCEEEcCCCCCcccCCHHHhhccccCCcEEECCCC-ccccCChh--HhccCceeecc
Confidence            223378999999888668888765   67 89999999986 58888876  55666666543

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=99.46  E-value=1.8e-12  Score=127.95  Aligned_cols=246  Identities=15%  Similarity=0.085  Sum_probs=140.5

Q ss_pred             cceeccCCC---CccCCchhhcCccccEEEeeecCCCcceecccchhhhhhcCCCCCceEEEEccCchhHHHHHhhhccc
Q 039808            6 NVEYVKMPP---QLISSGIISRLHALKTLSIVVYPGDKRWYKDVKSVVLEVCNLTELSSLCFHFPEIKLLELFLQRCVAW   82 (358)
Q Consensus         6 ~L~~l~L~~---~~ip~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~~~~~~l~~l~~~~~~~~~~   82 (358)
                      +++.++++.   +.+|..+.   ++|++|++++ +.+..       ++.   .+++|++|++..+.++.+|.        
T Consensus        41 ~l~~L~ls~n~L~~lp~~l~---~~L~~L~L~~-N~l~~-------lp~---~l~~L~~L~Ls~N~l~~lp~--------   98 (622)
T 3g06_A           41 GNAVLNVGESGLTTLPDCLP---AHITTLVIPD-NNLTS-------LPA---LPPELRTLEVSGNQLTSLPV--------   98 (622)
T ss_dssp             CCCEEECCSSCCSCCCSCCC---TTCSEEEECS-CCCSC-------CCC---CCTTCCEEEECSCCCSCCCC--------
T ss_pred             CCcEEEecCCCcCccChhhC---CCCcEEEecC-CCCCC-------CCC---cCCCCCEEEcCCCcCCcCCC--------
Confidence            467788877   45777642   7899999988 34432       222   56888889888777776653        


Q ss_pred             cccccceEEEEEeCccccccccCCcccccccccCCceEEeeCCC--CChHHHHhhccCccEEEeccCCCCCccCcccccC
Q 039808           83 NAQCLTEFRIVVGHDIKNIVSRVPDAVAFDYNKQGKCLRFINGE--NIPDAVLQILACCTAFYLDNHLHINSLSDFGVRS  160 (358)
Q Consensus        83 ~~~~L~~l~i~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~--~~~~~~~~~l~~L~~L~l~~~~~~~~l~~~~l~~  160 (358)
                      .+++|+.+.+.   .+  .+..+|.     .+.+|+.|.+.++.  .++.    .+++|+.|++.++ .+..++.    .
T Consensus        99 ~l~~L~~L~Ls---~N--~l~~l~~-----~l~~L~~L~L~~N~l~~lp~----~l~~L~~L~Ls~N-~l~~l~~----~  159 (622)
T 3g06_A           99 LPPGLLELSIF---SN--PLTHLPA-----LPSGLCKLWIFGNQLTSLPV----LPPGLQELSVSDN-QLASLPA----L  159 (622)
T ss_dssp             CCTTCCEEEEC---SC--CCCCCCC-----CCTTCCEEECCSSCCSCCCC----CCTTCCEEECCSS-CCSCCCC----C
T ss_pred             CCCCCCEEECc---CC--cCCCCCC-----CCCCcCEEECCCCCCCcCCC----CCCCCCEEECcCC-cCCCcCC----c
Confidence            45677777762   11  1223332     34467777776653  3332    2477888888777 5555542    2


Q ss_pred             ccCCcEEEeecCCCceEecCCCCccccCCCccceeecccccccccccccccCCCcCccccEEeEecCCCccccCchhhhc
Q 039808          161 INGLKFCIISECPKIETVVDGKELTTVIFPSLENLSIHHLWNLTHICEGSVPNGSFARLRILSVHACPKLKFVFSSFMIH  240 (358)
Q Consensus       161 l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~l~  240 (358)
                      +.+|+.|++++|. +..++       ..+++|+.|+++++. ++.++      ..+++|+.|++.+| .++.++     .
T Consensus       160 ~~~L~~L~L~~N~-l~~l~-------~~~~~L~~L~Ls~N~-l~~l~------~~~~~L~~L~L~~N-~l~~l~-----~  218 (622)
T 3g06_A          160 PSELCKLWAYNNQ-LTSLP-------MLPSGLQELSVSDNQ-LASLP------TLPSELYKLWAYNN-RLTSLP-----A  218 (622)
T ss_dssp             CTTCCEEECCSSC-CSCCC-------CCCTTCCEEECCSSC-CSCCC------CCCTTCCEEECCSS-CCSSCC-----C
T ss_pred             cCCCCEEECCCCC-CCCCc-------ccCCCCcEEECCCCC-CCCCC------CccchhhEEECcCC-cccccC-----C
Confidence            4567777776653 33332       235667777666643 33321      12356666666654 333331     1


Q ss_pred             cCCCccEEEEecCCccccccccccccccccccCCCcceeccccccccccccCCCCCCccEEeeeCCcCCCccCCCCCCCC
Q 039808          241 FMSNLEDLTVEDCPAIEEIISEGEIIDSGCTALPRLKKLTLHYLPGLVTIWSSAWPSLEYVSFYDCPRLKNIGLGSNLKH  320 (358)
Q Consensus       241 ~l~~L~~L~i~~c~~l~~i~~~~~~~~~~~~~l~~L~~L~l~~c~~L~~~~~~~~~~L~~L~i~~C~~L~~lP~~~~~~~  320 (358)
                      .+++|+.|+++++ .+..++          ..+++|+.|+++++ .++.++. .+++|+.|++++| +++.+|..+..++
T Consensus       219 ~~~~L~~L~Ls~N-~L~~lp----------~~l~~L~~L~Ls~N-~L~~lp~-~~~~L~~L~Ls~N-~L~~lp~~l~~l~  284 (622)
T 3g06_A          219 LPSGLKELIVSGN-RLTSLP----------VLPSELKELMVSGN-RLTSLPM-LPSGLLSLSVYRN-QLTRLPESLIHLS  284 (622)
T ss_dssp             CCTTCCEEECCSS-CCSCCC----------CCCTTCCEEECCSS-CCSCCCC-CCTTCCEEECCSS-CCCSCCGGGGGSC
T ss_pred             CCCCCCEEEccCC-ccCcCC----------CCCCcCcEEECCCC-CCCcCCc-ccccCcEEeCCCC-CCCcCCHHHhhcc
Confidence            2356666666654 333332          34456666666554 4555554 5566666666665 4556666555556


Q ss_pred             CeeEEEe
Q 039808          321 SVMEIKA  327 (358)
Q Consensus       321 ~L~~~~~  327 (358)
                      +|+.+..
T Consensus       285 ~L~~L~L  291 (622)
T 3g06_A          285 SETTVNL  291 (622)
T ss_dssp             TTCEEEC
T ss_pred             ccCEEEe
Confidence            6665543

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=99.44  E-value=6.6e-14  Score=137.87  Aligned_cols=256  Identities=12%  Similarity=-0.013  Sum_probs=122.4

Q ss_pred             hhhhcCCCCCceEEEEccCchhHHHHHhhhccccccccceEEEEEeCccccccccCCcccccccccCCceEEeeCCC-CC
Q 039808           50 VLEVCNLTELSSLCFHFPEIKLLELFLQRCVAWNAQCLTEFRIVVGHDIKNIVSRVPDAVAFDYNKQGKCLRFINGE-NI  128 (358)
Q Consensus        50 ~~~l~~l~~L~~L~~~~~~l~~l~~~~~~~~~~~~~~L~~l~i~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~-~~  128 (358)
                      ...+.+|++|++|.+..+.+..++..+.     .+++|+.+.+..  .. ..+...+....+..+.+++.+.+.+.. ..
T Consensus       213 ~~~~~~~~~L~~L~L~~~~~~~l~~~~~-----~~~~L~~L~l~~--~~-~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~  284 (592)
T 3ogk_B          213 ETIARNCRSLVSVKVGDFEILELVGFFK-----AAANLEEFCGGS--LN-EDIGMPEKYMNLVFPRKLCRLGLSYMGPNE  284 (592)
T ss_dssp             HHHHHHCTTCCEEECSSCBGGGGHHHHH-----HCTTCCEEEECB--CC-CCTTCTTSSSCCCCCTTCCEEEETTCCTTT
T ss_pred             HHHHhhCCCCcEEeccCccHHHHHHHHh-----hhhHHHhhcccc--cc-cccchHHHHHHhhccccccccCccccchhH
Confidence            3345677778877776666666665544     456677666521  11 000001111233444455556554432 12


Q ss_pred             hHHHHhhccCccEEEeccCCCCCccCc-ccccCccCCcEEEeec----------------------------------CC
Q 039808          129 PDAVLQILACCTAFYLDNHLHINSLSD-FGVRSINGLKFCIISE----------------------------------CP  173 (358)
Q Consensus       129 ~~~~~~~l~~L~~L~l~~~~~~~~l~~-~~l~~l~~L~~L~l~~----------------------------------~~  173 (358)
                      ...+...+++|+.|++.+|. +..... ..+..+++|++|++.+                                  |.
T Consensus       285 l~~~~~~~~~L~~L~Ls~~~-l~~~~~~~~~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~  363 (592)
T 3ogk_B          285 MPILFPFAAQIRKLDLLYAL-LETEDHCTLIQKCPNLEVLETRNVIGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEG  363 (592)
T ss_dssp             GGGGGGGGGGCCEEEETTCC-CCHHHHHHHHTTCTTCCEEEEEGGGHHHHHHHHHHHCTTCCEEEEECCCCSSTTSSTTC
T ss_pred             HHHHHhhcCCCcEEecCCCc-CCHHHHHHHHHhCcCCCEEeccCccCHHHHHHHHHhCCCCCEEEeecCccccccccccC
Confidence            22233445666666666663 322111 0134555555555542                                  22


Q ss_pred             CceEecCCCCccccCCCccceeecccccccccccccccCCC-cCccccEEeEec---CCCccccCc----hhhhccCCCc
Q 039808          174 KIETVVDGKELTTVIFPSLENLSIHHLWNLTHICEGSVPNG-SFARLRILSVHA---CPKLKFVFS----SFMIHFMSNL  245 (358)
Q Consensus       174 ~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~-~~~~L~~L~l~~---c~~l~~l~~----~~~l~~l~~L  245 (358)
                      .+.... . ......+++|++|.+ .|..++....  ...+ .+++|++|++..   |..++..+.    ...+..+++|
T Consensus       364 ~~~~~~-~-~~l~~~~~~L~~L~l-~~~~l~~~~~--~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L  438 (592)
T 3ogk_B          364 LVSQRG-L-IALAQGCQELEYMAV-YVSDITNESL--ESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKL  438 (592)
T ss_dssp             CCCHHH-H-HHHHHHCTTCSEEEE-EESCCCHHHH--HHHHHHCCSCCEEEEEECSCCSCCSSCCCHHHHHHHHHHCTTC
T ss_pred             ccCHHH-H-HHHHhhCccCeEEEe-ecCCccHHHH--HHHHhhCCCCcEEEEeecCCCccccCchHHHHHHHHHHhCCCC
Confidence            211100 0 000112455555555 2222222100  0011 256677777763   445554211    1234557777


Q ss_pred             cEEEEecCCc-cccccccccccccccccCCCcceeccccccccccccCC----CCCCccEEeeeCCcCCCc--cCCCCCC
Q 039808          246 EDLTVEDCPA-IEEIISEGEIIDSGCTALPRLKKLTLHYLPGLVTIWSS----AWPSLEYVSFYDCPRLKN--IGLGSNL  318 (358)
Q Consensus       246 ~~L~i~~c~~-l~~i~~~~~~~~~~~~~l~~L~~L~l~~c~~L~~~~~~----~~~~L~~L~i~~C~~L~~--lP~~~~~  318 (358)
                      +.|+++.|.. +....     ...-...+++|+.|++++|. ++.....    ++++|++|++++|+ +..  ++.....
T Consensus       439 ~~L~L~~~~~~l~~~~-----~~~~~~~~~~L~~L~L~~n~-l~~~~~~~~~~~~~~L~~L~l~~n~-l~~~~~~~~~~~  511 (592)
T 3ogk_B          439 RRFAFYLRQGGLTDLG-----LSYIGQYSPNVRWMLLGYVG-ESDEGLMEFSRGCPNLQKLEMRGCC-FSERAIAAAVTK  511 (592)
T ss_dssp             CEEEEECCGGGCCHHH-----HHHHHHSCTTCCEEEECSCC-SSHHHHHHHHTCCTTCCEEEEESCC-CBHHHHHHHHHH
T ss_pred             CEEEEecCCCCccHHH-----HHHHHHhCccceEeeccCCC-CCHHHHHHHHhcCcccCeeeccCCC-CcHHHHHHHHHh
Confidence            7777766543 21110     00012347889999987663 5432211    78999999999998 432  3433345


Q ss_pred             CCCeeEEE
Q 039808          319 KHSVMEIK  326 (358)
Q Consensus       319 ~~~L~~~~  326 (358)
                      +++|+.+.
T Consensus       512 l~~L~~L~  519 (592)
T 3ogk_B          512 LPSLRYLW  519 (592)
T ss_dssp             CSSCCEEE
T ss_pred             cCccCeeE
Confidence            66777664

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=99.43  E-value=1.9e-13  Score=130.46  Aligned_cols=177  Identities=11%  Similarity=0.047  Sum_probs=82.7

Q ss_pred             ccceeccCCC---CccCCchhhcCccccEEEeeecCCCcceecccchhhhhhcCCCC-------------CceEEEEccC
Q 039808            5 CNVEYVKMPP---QLISSGIISRLHALKTLSIVVYPGDKRWYKDVKSVVLEVCNLTE-------------LSSLCFHFPE   68 (358)
Q Consensus         5 ~~L~~l~L~~---~~ip~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~l~~-------------L~~L~~~~~~   68 (358)
                      ++|+.++++.   +.+|+. ++++.+|++|+++++ .+.      ...+..++++++             +++|++..+.
T Consensus        11 ~~L~~L~l~~n~l~~iP~~-i~~L~~L~~L~l~~n-~~~------~~~p~~~~~l~~L~~l~l~~c~~~~l~~L~l~~~~   82 (454)
T 1jl5_A           11 TFLQEPLRHSSNLTEMPVE-AENVKSKTEYYNAWS-EWE------RNAPPGNGEQREMAVSRLRDCLDRQAHELELNNLG   82 (454)
T ss_dssp             ------------------------CCHHHHHHHHH-HHH------HTSCTTSCCCHHHHHHHHHHHHHHTCSEEECTTSC
T ss_pred             ccchhhhcccCchhhCChh-HhcccchhhhhccCC-ccc------ccCCcccccchhcchhhhhhhhccCCCEEEecCCc
Confidence            5677787776   567877 489999999988872 111      123444555544             4677776555


Q ss_pred             chhHHHHHhhhccccccccceEEEEEeCccccccccCCcccccccccCCceEEeeCCC--CChHHHHhhccCccEEEecc
Q 039808           69 IKLLELFLQRCVAWNAQCLTEFRIVVGHDIKNIVSRVPDAVAFDYNKQGKCLRFINGE--NIPDAVLQILACCTAFYLDN  146 (358)
Q Consensus        69 l~~l~~~~~~~~~~~~~~L~~l~i~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~--~~~~~~~~~l~~L~~L~l~~  146 (358)
                      ++.+|.        ..++|+.+.+.   .+  .+..+|.     .+.+++.|.+.++.  +++.    ..++++.|++.+
T Consensus        83 l~~lp~--------~~~~L~~L~l~---~n--~l~~lp~-----~~~~L~~L~l~~n~l~~l~~----~~~~L~~L~L~~  140 (454)
T 1jl5_A           83 LSSLPE--------LPPHLESLVAS---CN--SLTELPE-----LPQSLKSLLVDNNNLKALSD----LPPLLEYLGVSN  140 (454)
T ss_dssp             CSCCCS--------CCTTCSEEECC---SS--CCSSCCC-----CCTTCCEEECCSSCCSCCCS----CCTTCCEEECCS
T ss_pred             cccCCC--------CcCCCCEEEcc---CC--cCCcccc-----ccCCCcEEECCCCccCcccC----CCCCCCEEECcC
Confidence            555442        23456666541   11  1122332     12466777766553  2211    235777777777


Q ss_pred             CCCCCccCcccccCccCCcEEEeecCCCceEecCCCCccccCCCccceeecccccccccccccccCCCcCccccEEeEec
Q 039808          147 HLHINSLSDFGVRSINGLKFCIISECPKIETVVDGKELTTVIFPSLENLSIHHLWNLTHICEGSVPNGSFARLRILSVHA  226 (358)
Q Consensus       147 ~~~~~~l~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~  226 (358)
                      + .+..++  .++++++|++|++++|. +..++.       .+++|++|+++++. ++.++    ..+.+++|++|++.+
T Consensus       141 n-~l~~lp--~~~~l~~L~~L~l~~N~-l~~lp~-------~~~~L~~L~L~~n~-l~~l~----~~~~l~~L~~L~l~~  204 (454)
T 1jl5_A          141 N-QLEKLP--ELQNSSFLKIIDVDNNS-LKKLPD-------LPPSLEFIAAGNNQ-LEELP----ELQNLPFLTAIYADN  204 (454)
T ss_dssp             S-CCSSCC--CCTTCTTCCEEECCSSC-CSCCCC-------CCTTCCEEECCSSC-CSSCC----CCTTCTTCCEEECCS
T ss_pred             C-CCCCCc--ccCCCCCCCEEECCCCc-CcccCC-------CcccccEEECcCCc-CCcCc----cccCCCCCCEEECCC
Confidence            7 555565  36777777777777763 333321       12466666666542 22221    234455555555555


Q ss_pred             C
Q 039808          227 C  227 (358)
Q Consensus       227 c  227 (358)
                      |
T Consensus       205 N  205 (454)
T 1jl5_A          205 N  205 (454)
T ss_dssp             S
T ss_pred             C
Confidence            4

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=99.43  E-value=3.3e-12  Score=126.38  Aligned_cols=104  Identities=13%  Similarity=0.153  Sum_probs=76.0

Q ss_pred             CcCccccEEeEecCCCccccCchhhhccCCCccEEEEecCCccccccccccccccccccCCCcceeccccccccccccCC
Q 039808          214 GSFARLRILSVHACPKLKFVFSSFMIHFMSNLEDLTVEDCPAIEEIISEGEIIDSGCTALPRLKKLTLHYLPGLVTIWSS  293 (358)
Q Consensus       214 ~~~~~L~~L~l~~c~~l~~l~~~~~l~~l~~L~~L~i~~c~~l~~i~~~~~~~~~~~~~l~~L~~L~l~~c~~L~~~~~~  293 (358)
                      ..+++|+.|++.++.....+.+ ..+..+++|+.|++++| .+..++      ...+..+++|+.|+++++ +++.++..
T Consensus       466 ~~~~~L~~L~Ls~N~~~~~~~~-~~~~~l~~L~~L~Ls~N-~L~~l~------~~~f~~l~~L~~L~Ls~N-~l~~l~~~  536 (635)
T 4g8a_A          466 NGLSSLEVLKMAGNSFQENFLP-DIFTELRNLTFLDLSQC-QLEQLS------PTAFNSLSSLQVLNMSHN-NFFSLDTF  536 (635)
T ss_dssp             TTCTTCCEEECTTCEEGGGEEC-SCCTTCTTCCEEECTTS-CCCEEC------TTTTTTCTTCCEEECTTS-CCCBCCCG
T ss_pred             ccchhhhhhhhhhcccccccCc-hhhhhccccCEEECCCC-ccCCcC------hHHHcCCCCCCEEECCCC-cCCCCChh
Confidence            4567788888887765554433 34677889999999887 455543      135778999999999876 78887765


Q ss_pred             ---CCCCccEEeeeCCcCCCcc-CCCCCCC-CCeeEEEe
Q 039808          294 ---AWPSLEYVSFYDCPRLKNI-GLGSNLK-HSVMEIKA  327 (358)
Q Consensus       294 ---~~~~L~~L~i~~C~~L~~l-P~~~~~~-~~L~~~~~  327 (358)
                         .+++|+.|+++++. ++.+ |..+..+ ++|+.+.-
T Consensus       537 ~~~~l~~L~~L~Ls~N~-l~~~~~~~l~~l~~~L~~L~L  574 (635)
T 4g8a_A          537 PYKCLNSLQVLDYSLNH-IMTSKKQELQHFPSSLAFLNL  574 (635)
T ss_dssp             GGTTCTTCCEEECTTSC-CCBCCSSCTTCCCTTCCEEEC
T ss_pred             HHhCCCCCCEEECCCCc-CCCCCHHHHHhhhCcCCEEEe
Confidence               78999999999985 6666 4555665 67888753

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=99.42  E-value=9.3e-14  Score=127.02  Aligned_cols=222  Identities=14%  Similarity=0.058  Sum_probs=136.1

Q ss_pred             ceeccCCCCccCCchhhcC--ccccEEEeeecCCCcceecccchhhhhhcCCCCCceEEEEccCchh--HHHHHhhhccc
Q 039808            7 VEYVKMPPQLISSGIISRL--HALKTLSIVVYPGDKRWYKDVKSVVLEVCNLTELSSLCFHFPEIKL--LELFLQRCVAW   82 (358)
Q Consensus         7 L~~l~L~~~~ip~~~i~~L--~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~~~~~~l~~--l~~~~~~~~~~   82 (358)
                      ++.++++...+.+..++++  .++++|++.+ +.+       ......+.++++|++|++..+.+..  ++..+.     
T Consensus        49 ~~~l~l~~~~~~~~~~~~~~~~~l~~L~l~~-n~l-------~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~-----  115 (336)
T 2ast_B           49 WQTLDLTGKNLHPDVTGRLLSQGVIAFRCPR-SFM-------DQPLAEHFSPFRVQHMDLSNSVIEVSTLHGILS-----  115 (336)
T ss_dssp             SSEEECTTCBCCHHHHHHHHHTTCSEEECTT-CEE-------CSCCCSCCCCBCCCEEECTTCEECHHHHHHHHT-----
T ss_pred             heeeccccccCCHHHHHhhhhccceEEEcCC-ccc-------cccchhhccCCCCCEEEccCCCcCHHHHHHHHh-----
Confidence            5666777655555566777  7888888876 221       2222335677888888876555432  332222     


Q ss_pred             cccccceEEEEEeCccccccccCCcccccccccCCceEEeeCCCCC--hHHHHhhccCccEEEeccCCCCCc--cCcccc
Q 039808           83 NAQCLTEFRIVVGHDIKNIVSRVPDAVAFDYNKQGKCLRFINGENI--PDAVLQILACCTAFYLDNHLHINS--LSDFGV  158 (358)
Q Consensus        83 ~~~~L~~l~i~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~--~~~~~~~l~~L~~L~l~~~~~~~~--l~~~~l  158 (358)
                                                    .+++|+.|.+.++.-.  .......+++|+.|++.+|..+..  ++. .+
T Consensus       116 ------------------------------~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~-~~  164 (336)
T 2ast_B          116 ------------------------------QCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQT-LL  164 (336)
T ss_dssp             ------------------------------TBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHH-HH
T ss_pred             ------------------------------hCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHH-HH
Confidence                                          2235666666555311  112233478888898888855553  333 36


Q ss_pred             cCccCCcEEEeecCCCceE--ecCCCCccccCCC-ccceeeccccc-ccccccccccCCCcCccccEEeEecCCCccccC
Q 039808          159 RSINGLKFCIISECPKIET--VVDGKELTTVIFP-SLENLSIHHLW-NLTHICEGSVPNGSFARLRILSVHACPKLKFVF  234 (358)
Q Consensus       159 ~~l~~L~~L~l~~~~~~~~--~~~~~~~~~~~l~-~L~~L~l~~~~-~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~  234 (358)
                      .++++|++|++++|..+..  ++..    ...++ +|++|+++++. .+..... +...+.+++|++|++.+|..++...
T Consensus       165 ~~~~~L~~L~l~~~~~l~~~~~~~~----~~~l~~~L~~L~l~~~~~~~~~~~l-~~~~~~~~~L~~L~l~~~~~l~~~~  239 (336)
T 2ast_B          165 SSCSRLDELNLSWCFDFTEKHVQVA----VAHVSETITQLNLSGYRKNLQKSDL-STLVRRCPNLVHLDLSDSVMLKNDC  239 (336)
T ss_dssp             HHCTTCCEEECCCCTTCCHHHHHHH----HHHSCTTCCEEECCSCGGGSCHHHH-HHHHHHCTTCSEEECTTCTTCCGGG
T ss_pred             hcCCCCCEEcCCCCCCcChHHHHHH----HHhcccCCCEEEeCCCcccCCHHHH-HHHHhhCCCCCEEeCCCCCcCCHHH
Confidence            7788999999988855542  1111    44577 89999998875 3321100 1112457889999998887665443


Q ss_pred             chhhhccCCCccEEEEecCCccccccccccccccccccCCCcceeccccc
Q 039808          235 SSFMIHFMSNLEDLTVEDCPAIEEIISEGEIIDSGCTALPRLKKLTLHYL  284 (358)
Q Consensus       235 ~~~~l~~l~~L~~L~i~~c~~l~~i~~~~~~~~~~~~~l~~L~~L~l~~c  284 (358)
                      +. .+..+++|+.|++++|..+....      -..+..+++|+.|++++|
T Consensus       240 ~~-~l~~l~~L~~L~l~~~~~~~~~~------~~~l~~~~~L~~L~l~~~  282 (336)
T 2ast_B          240 FQ-EFFQLNYLQHLSLSRCYDIIPET------LLELGEIPTLKTLQVFGI  282 (336)
T ss_dssp             GG-GGGGCTTCCEEECTTCTTCCGGG------GGGGGGCTTCCEEECTTS
T ss_pred             HH-HHhCCCCCCEeeCCCCCCCCHHH------HHHHhcCCCCCEEeccCc
Confidence            33 45678899999998886443211      013566888999999887

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=99.41  E-value=3.8e-12  Score=125.59  Aligned_cols=230  Identities=16%  Similarity=0.125  Sum_probs=166.6

Q ss_pred             ccceeccCCC---CccCCchhhcCccccEEEeeecCCCcceecccchhhhhhcCCCCCceEEEEccCchhHHHHHhhhcc
Q 039808            5 CNVEYVKMPP---QLISSGIISRLHALKTLSIVVYPGDKRWYKDVKSVVLEVCNLTELSSLCFHFPEIKLLELFLQRCVA   81 (358)
Q Consensus         5 ~~L~~l~L~~---~~ip~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~~~~~~l~~l~~~~~~~~~   81 (358)
                      .+|++|+++.   +.+|.    .+++|++|++++ +.+..       ++.   .+++|++|++..+.+..++.       
T Consensus        61 ~~L~~L~L~~N~l~~lp~----~l~~L~~L~Ls~-N~l~~-------lp~---~l~~L~~L~Ls~N~l~~l~~-------  118 (622)
T 3g06_A           61 AHITTLVIPDNNLTSLPA----LPPELRTLEVSG-NQLTS-------LPV---LPPGLLELSIFSNPLTHLPA-------  118 (622)
T ss_dssp             TTCSEEEECSCCCSCCCC----CCTTCCEEEECS-CCCSC-------CCC---CCTTCCEEEECSCCCCCCCC-------
T ss_pred             CCCcEEEecCCCCCCCCC----cCCCCCEEEcCC-CcCCc-------CCC---CCCCCCEEECcCCcCCCCCC-------
Confidence            5789999988   34565    578999999998 44432       222   78999999998888877653       


Q ss_pred             ccccccceEEEEEeCccccccccCCcccccccccCCceEEeeCCC--CChHHHHhhccCccEEEeccCCCCCccCccccc
Q 039808           82 WNAQCLTEFRIVVGHDIKNIVSRVPDAVAFDYNKQGKCLRFINGE--NIPDAVLQILACCTAFYLDNHLHINSLSDFGVR  159 (358)
Q Consensus        82 ~~~~~L~~l~i~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~--~~~~~~~~~l~~L~~L~l~~~~~~~~l~~~~l~  159 (358)
                       .+.+|+.+.+.   .+  .+..+|.     .+++|+.|.+.++.  +++.    .+.+|+.|++.++ .+..++    .
T Consensus       119 -~l~~L~~L~L~---~N--~l~~lp~-----~l~~L~~L~Ls~N~l~~l~~----~~~~L~~L~L~~N-~l~~l~----~  178 (622)
T 3g06_A          119 -LPSGLCKLWIF---GN--QLTSLPV-----LPPGLQELSVSDNQLASLPA----LPSELCKLWAYNN-QLTSLP----M  178 (622)
T ss_dssp             -CCTTCCEEECC---SS--CCSCCCC-----CCTTCCEEECCSSCCSCCCC----CCTTCCEEECCSS-CCSCCC----C
T ss_pred             -CCCCcCEEECC---CC--CCCcCCC-----CCCCCCEEECcCCcCCCcCC----ccCCCCEEECCCC-CCCCCc----c
Confidence             45678877762   11  1234443     13588999998874  3332    4678999999988 676665    4


Q ss_pred             CccCCcEEEeecCCCceEecCCCCccccCCCccceeecccccccccccccccCCCcCccccEEeEecCCCccccCchhhh
Q 039808          160 SINGLKFCIISECPKIETVVDGKELTTVIFPSLENLSIHHLWNLTHICEGSVPNGSFARLRILSVHACPKLKFVFSSFMI  239 (358)
Q Consensus       160 ~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~l  239 (358)
                      .+++|+.|++++|. +..++       ..+++|++|.+.++. ++.++      ..+++|++|+++++ .++.++     
T Consensus       179 ~~~~L~~L~Ls~N~-l~~l~-------~~~~~L~~L~L~~N~-l~~l~------~~~~~L~~L~Ls~N-~L~~lp-----  237 (622)
T 3g06_A          179 LPSGLQELSVSDNQ-LASLP-------TLPSELYKLWAYNNR-LTSLP------ALPSGLKELIVSGN-RLTSLP-----  237 (622)
T ss_dssp             CCTTCCEEECCSSC-CSCCC-------CCCTTCCEEECCSSC-CSSCC------CCCTTCCEEECCSS-CCSCCC-----
T ss_pred             cCCCCcEEECCCCC-CCCCC-------CccchhhEEECcCCc-ccccC------CCCCCCCEEEccCC-ccCcCC-----
Confidence            57899999999874 44332       235789999998863 44432      23589999999987 566652     


Q ss_pred             ccCCCccEEEEecCCccccccccccccccccccCCCcceeccccccccccccCC--CCCCccEEeeeCCcCC
Q 039808          240 HFMSNLEDLTVEDCPAIEEIISEGEIIDSGCTALPRLKKLTLHYLPGLVTIWSS--AWPSLEYVSFYDCPRL  309 (358)
Q Consensus       240 ~~l~~L~~L~i~~c~~l~~i~~~~~~~~~~~~~l~~L~~L~l~~c~~L~~~~~~--~~~~L~~L~i~~C~~L  309 (358)
                      ..+++|+.|+++++ .+..++         . .+++|+.|+++++ .++.+|..  .+++|+.|++++|+--
T Consensus       238 ~~l~~L~~L~Ls~N-~L~~lp---------~-~~~~L~~L~Ls~N-~L~~lp~~l~~l~~L~~L~L~~N~l~  297 (622)
T 3g06_A          238 VLPSELKELMVSGN-RLTSLP---------M-LPSGLLSLSVYRN-QLTRLPESLIHLSSETTVNLEGNPLS  297 (622)
T ss_dssp             CCCTTCCEEECCSS-CCSCCC---------C-CCTTCCEEECCSS-CCCSCCGGGGGSCTTCEEECCSCCCC
T ss_pred             CCCCcCcEEECCCC-CCCcCC---------c-ccccCcEEeCCCC-CCCcCCHHHhhccccCEEEecCCCCC
Confidence            46789999999987 666665         2 6789999999877 78888766  8999999999998743

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=99.41  E-value=7.1e-12  Score=119.51  Aligned_cols=204  Identities=19%  Similarity=0.176  Sum_probs=105.9

Q ss_pred             hhcCCCCCceEEEEccCchhHHHHHhhhccccccccceEEEEEeCccccccccCCcccccccccCCceEEeeCCC--CCh
Q 039808           52 EVCNLTELSSLCFHFPEIKLLELFLQRCVAWNAQCLTEFRIVVGHDIKNIVSRVPDAVAFDYNKQGKCLRFINGE--NIP  129 (358)
Q Consensus        52 ~l~~l~~L~~L~~~~~~l~~l~~~~~~~~~~~~~~L~~l~i~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~--~~~  129 (358)
                      +++++++|++|++..+.++.+|.        ...+|+.+.+.   .+  .+..+|   .+..+..|+.|.+.++.  +++
T Consensus       148 ~~~~l~~L~~L~l~~N~l~~lp~--------~~~~L~~L~L~---~n--~l~~l~---~~~~l~~L~~L~l~~N~l~~l~  211 (454)
T 1jl5_A          148 ELQNSSFLKIIDVDNNSLKKLPD--------LPPSLEFIAAG---NN--QLEELP---ELQNLPFLTAIYADNNSLKKLP  211 (454)
T ss_dssp             CCTTCTTCCEEECCSSCCSCCCC--------CCTTCCEEECC---SS--CCSSCC---CCTTCTTCCEEECCSSCCSSCC
T ss_pred             ccCCCCCCCEEECCCCcCcccCC--------CcccccEEECc---CC--cCCcCc---cccCCCCCCEEECCCCcCCcCC
Confidence            46777777777776666655542        23456666551   11  112333   34556677777776653  222


Q ss_pred             HHHHhhccCccEEEeccCCCCCccCcccccCccCCcEEEeecCCCceEecCCCCccccCCCccceeeccccccccccccc
Q 039808          130 DAVLQILACCTAFYLDNHLHINSLSDFGVRSINGLKFCIISECPKIETVVDGKELTTVIFPSLENLSIHHLWNLTHICEG  209 (358)
Q Consensus       130 ~~~~~~l~~L~~L~l~~~~~~~~l~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~  209 (358)
                      .    ..++++.|++.++ .+..++.  ++.+++|++|++++|. +..+++       .+++|++|+++++. ++.++. 
T Consensus       212 ~----~~~~L~~L~l~~n-~l~~lp~--~~~l~~L~~L~l~~N~-l~~l~~-------~~~~L~~L~l~~N~-l~~l~~-  274 (454)
T 1jl5_A          212 D----LPLSLESIVAGNN-ILEELPE--LQNLPFLTTIYADNNL-LKTLPD-------LPPSLEALNVRDNY-LTDLPE-  274 (454)
T ss_dssp             C----CCTTCCEEECCSS-CCSSCCC--CTTCTTCCEEECCSSC-CSSCCS-------CCTTCCEEECCSSC-CSCCCC-
T ss_pred             C----CcCcccEEECcCC-cCCcccc--cCCCCCCCEEECCCCc-CCcccc-------cccccCEEECCCCc-ccccCc-
Confidence            2    2357888888877 6666663  7788888888888763 332321       23566666665543 222211 


Q ss_pred             ccCCCcCccccEEeEecCCCccccCchh--------------hhccC-CCccEEEEecCCccccccccccccccccccCC
Q 039808          210 SVPNGSFARLRILSVHACPKLKFVFSSF--------------MIHFM-SNLEDLTVEDCPAIEEIISEGEIIDSGCTALP  274 (358)
Q Consensus       210 ~~~~~~~~~L~~L~l~~c~~l~~l~~~~--------------~l~~l-~~L~~L~i~~c~~l~~i~~~~~~~~~~~~~l~  274 (358)
                           .+++|++|++++|. ++.++..+              .+..+ ++|+.|+++++ .+..++          ..++
T Consensus       275 -----~~~~L~~L~ls~N~-l~~l~~~~~~L~~L~l~~N~l~~i~~~~~~L~~L~Ls~N-~l~~lp----------~~~~  337 (454)
T 1jl5_A          275 -----LPQSLTFLDVSENI-FSGLSELPPNLYYLNASSNEIRSLCDLPPSLEELNVSNN-KLIELP----------ALPP  337 (454)
T ss_dssp             -----CCTTCCEEECCSSC-CSEESCCCTTCCEEECCSSCCSEECCCCTTCCEEECCSS-CCSCCC----------CCCT
T ss_pred             -----ccCcCCEEECcCCc-cCcccCcCCcCCEEECcCCcCCcccCCcCcCCEEECCCC-cccccc----------ccCC
Confidence                 12455555555442 22210000              00111 24455555443 222222          1245


Q ss_pred             CcceeccccccccccccCCCCCCccEEeeeCCc
Q 039808          275 RLKKLTLHYLPGLVTIWSSAWPSLEYVSFYDCP  307 (358)
Q Consensus       275 ~L~~L~l~~c~~L~~~~~~~~~~L~~L~i~~C~  307 (358)
                      +|+.|+++++ .++.++. .+++|++|++++|+
T Consensus       338 ~L~~L~L~~N-~l~~lp~-~l~~L~~L~L~~N~  368 (454)
T 1jl5_A          338 RLERLIASFN-HLAEVPE-LPQNLKQLHVEYNP  368 (454)
T ss_dssp             TCCEEECCSS-CCSCCCC-CCTTCCEEECCSSC
T ss_pred             cCCEEECCCC-ccccccc-hhhhccEEECCCCC
Confidence            6666666555 4555555 56667777776664

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.40  E-value=1.8e-12  Score=124.68  Aligned_cols=167  Identities=14%  Similarity=0.084  Sum_probs=102.8

Q ss_pred             cCCceEEeeCCC--CChHHHHhhccCccEEEeccCCCCCccCcccccCccCCcEEEeecCCCceEecCCCCccccCCCcc
Q 039808          115 KQGKCLRFINGE--NIPDAVLQILACCTAFYLDNHLHINSLSDFGVRSINGLKFCIISECPKIETVVDGKELTTVIFPSL  192 (358)
Q Consensus       115 ~~L~~L~l~~~~--~~~~~~~~~l~~L~~L~l~~~~~~~~l~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L  192 (358)
                      ..|+.|.+.++.  +++.   ..+++|+.|++.++ .+..+....++++++|++|++++|......+...   ...+++|
T Consensus        99 ~~L~~L~L~~N~l~~~~~---~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l---~~~l~~L  171 (487)
T 3oja_A           99 PSIETLHAANNNISRVSC---SRGQGKKNIYLANN-KITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAEL---AASSDTL  171 (487)
T ss_dssp             TTCCEEECCSSCCCCEEE---CCCSSCEEEECCSS-CCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGG---GGGTTTC
T ss_pred             CCcCEEECcCCcCCCCCc---cccCCCCEEECCCC-CCCCCCchhhcCCCCCCEEECCCCCCCCcChHHH---hhhCCcc
Confidence            366666666553  2222   23577888888877 6666554457778888888888875444333221   1256788


Q ss_pred             ceeecccccccccccccccCCCcCccccEEeEecCCCccccCchhhhccCCCccEEEEecCCcccccccccccccccccc
Q 039808          193 ENLSIHHLWNLTHICEGSVPNGSFARLRILSVHACPKLKFVFSSFMIHFMSNLEDLTVEDCPAIEEIISEGEIIDSGCTA  272 (358)
Q Consensus       193 ~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~l~~l~~L~~L~i~~c~~l~~i~~~~~~~~~~~~~  272 (358)
                      ++|+++++. +..+    .....+++|++|+++++ .++.+++.  +..+++|+.|+++++ .+..++       ..+..
T Consensus       172 ~~L~Ls~N~-l~~~----~~~~~l~~L~~L~Ls~N-~l~~~~~~--~~~l~~L~~L~Ls~N-~l~~lp-------~~l~~  235 (487)
T 3oja_A          172 EHLNLQYNF-IYDV----KGQVVFAKLKTLDLSSN-KLAFMGPE--FQSAAGVTWISLRNN-KLVLIE-------KALRF  235 (487)
T ss_dssp             CEEECTTSC-CCEE----ECCCCCTTCCEEECCSS-CCCEECGG--GGGGTTCSEEECTTS-CCCEEC-------TTCCC
T ss_pred             cEEecCCCc-cccc----cccccCCCCCEEECCCC-CCCCCCHh--HcCCCCccEEEecCC-cCcccc-------hhhcc
Confidence            888887764 3332    11234778888888876 45555432  567788888888875 444454       34566


Q ss_pred             CCCcceecccccccc-ccccCC--CCCCccEEeee
Q 039808          273 LPRLKKLTLHYLPGL-VTIWSS--AWPSLEYVSFY  304 (358)
Q Consensus       273 l~~L~~L~l~~c~~L-~~~~~~--~~~~L~~L~i~  304 (358)
                      +++|+.|++++++-. ..++..  .++.|+.+.+.
T Consensus       236 l~~L~~L~l~~N~l~c~~~~~~~~~l~~L~~l~~~  270 (487)
T 3oja_A          236 SQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQ  270 (487)
T ss_dssp             CTTCCEEECTTCCBCHHHHHHHHTTCHHHHHHHHH
T ss_pred             CCCCCEEEcCCCCCcCcchHHHHHhCCCCcEEecc
Confidence            788888888776433 122222  56666666665

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.38  E-value=1.9e-12  Score=124.65  Aligned_cols=228  Identities=12%  Similarity=-0.026  Sum_probs=134.0

Q ss_pred             ccccEEEeeecCCCcceecccchhhhhhcCCCCCceEEEEccCchhHHHHHhhhccccccccceEEEEEeCccccccccC
Q 039808           26 HALKTLSIVVYPGDKRWYKDVKSVVLEVCNLTELSSLCFHFPEIKLLELFLQRCVAWNAQCLTEFRIVVGHDIKNIVSRV  105 (358)
Q Consensus        26 ~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~~~~~~l~~l~~~~~~~~~~~~~~L~~l~i~~~~~~~~~~~~~  105 (358)
                      ++|++|++++ +.+..      ..+..+.++++|++|++..+.+...+                                
T Consensus        34 ~~L~~L~Ls~-n~l~~------~~~~~~~~l~~L~~L~Ls~N~l~~~~--------------------------------   74 (487)
T 3oja_A           34 WNVKELDLSG-NPLSQ------ISAADLAPFTKLELLNLSSNVLYETL--------------------------------   74 (487)
T ss_dssp             GGCCEEECCS-SCCCC------CCGGGGTTCTTCCEEECTTSCCEEEE--------------------------------
T ss_pred             CCccEEEeeC-CcCCC------CCHHHHhCCCCCCEEEeeCCCCCCCc--------------------------------
Confidence            3788998888 33321      12346788888888888555443221                                


Q ss_pred             CcccccccccCCceEEeeCCC--CChHHHHhhccCccEEEeccCCCCCccCcccccCccCCcEEEeecCCCceEecCCCC
Q 039808          106 PDAVAFDYNKQGKCLRFINGE--NIPDAVLQILACCTAFYLDNHLHINSLSDFGVRSINGLKFCIISECPKIETVVDGKE  183 (358)
Q Consensus       106 ~~~~~l~~~~~L~~L~l~~~~--~~~~~~~~~l~~L~~L~l~~~~~~~~l~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~  183 (358)
                          .+..+++|+.|.+.++.  +++     ..++|+.|++.++ .+..++   ...+++|++|++++|......+..  
T Consensus        75 ----~l~~l~~L~~L~Ls~N~l~~l~-----~~~~L~~L~L~~N-~l~~~~---~~~l~~L~~L~L~~N~l~~~~~~~--  139 (487)
T 3oja_A           75 ----DLESLSTLRTLDLNNNYVQELL-----VGPSIETLHAANN-NISRVS---CSRGQGKKNIYLANNKITMLRDLD--  139 (487)
T ss_dssp             ----ECTTCTTCCEEECCSSEEEEEE-----ECTTCCEEECCSS-CCCCEE---ECCCSSCEEEECCSSCCCSGGGBC--
T ss_pred             ----ccccCCCCCEEEecCCcCCCCC-----CCCCcCEEECcCC-cCCCCC---ccccCCCCEEECCCCCCCCCCchh--
Confidence                01222355556555542  121     1367888888777 555544   235677888888777433222112  


Q ss_pred             ccccCCCccceeecccccccccccccccCC-CcCccccEEeEecCCCccccCchhhhccCCCccEEEEecCCcccccccc
Q 039808          184 LTTVIFPSLENLSIHHLWNLTHICEGSVPN-GSFARLRILSVHACPKLKFVFSSFMIHFMSNLEDLTVEDCPAIEEIISE  262 (358)
Q Consensus       184 ~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~-~~~~~L~~L~l~~c~~l~~l~~~~~l~~l~~L~~L~i~~c~~l~~i~~~  262 (358)
                        ...+++|+.|+++++.-....   +... +.+++|++|++++|. ++.+++   ...+++|+.|+++++ .+..++  
T Consensus       140 --~~~l~~L~~L~Ls~N~l~~~~---~~~l~~~l~~L~~L~Ls~N~-l~~~~~---~~~l~~L~~L~Ls~N-~l~~~~--  207 (487)
T 3oja_A          140 --EGCRSRVQYLDLKLNEIDTVN---FAELAASSDTLEHLNLQYNF-IYDVKG---QVVFAKLKTLDLSSN-KLAFMG--  207 (487)
T ss_dssp             --GGGGSSEEEEECTTSCCCEEE---GGGGGGGTTTCCEEECTTSC-CCEEEC---CCCCTTCCEEECCSS-CCCEEC--
T ss_pred             --hcCCCCCCEEECCCCCCCCcC---hHHHhhhCCcccEEecCCCc-cccccc---cccCCCCCEEECCCC-CCCCCC--
Confidence              445677888888776432222   1112 246778888887764 444411   235778888888776 344444  


Q ss_pred             ccccccccccCCCcceeccccccccccccCC--CCCCccEEeeeCCcCC-CccCCCCCCCCCeeEE
Q 039808          263 GEIIDSGCTALPRLKKLTLHYLPGLVTIWSS--AWPSLEYVSFYDCPRL-KNIGLGSNLKHSVMEI  325 (358)
Q Consensus       263 ~~~~~~~~~~l~~L~~L~l~~c~~L~~~~~~--~~~~L~~L~i~~C~~L-~~lP~~~~~~~~L~~~  325 (358)
                           ..+..+++|+.|+++++ .++.+|..  .+++|+.|++++|+-. ..+|......+.|+.+
T Consensus       208 -----~~~~~l~~L~~L~Ls~N-~l~~lp~~l~~l~~L~~L~l~~N~l~c~~~~~~~~~l~~L~~l  267 (487)
T 3oja_A          208 -----PEFQSAAGVTWISLRNN-KLVLIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTV  267 (487)
T ss_dssp             -----GGGGGGTTCSEEECTTS-CCCEECTTCCCCTTCCEEECTTCCBCHHHHHHHHTTCHHHHHH
T ss_pred             -----HhHcCCCCccEEEecCC-cCcccchhhccCCCCCEEEcCCCCCcCcchHHHHHhCCCCcEE
Confidence                 23566778888888765 56666665  6778888888877643 2455545455544443

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=99.36  E-value=6.2e-12  Score=115.82  Aligned_cols=230  Identities=17%  Similarity=0.083  Sum_probs=120.8

Q ss_pred             CccCCchhhcCccccEEEeeecCCCcceecccchhh-hhhcCCCCCceEEEEccCc-hhHHHHHhhhccccccccceEEE
Q 039808           15 QLISSGIISRLHALKTLSIVVYPGDKRWYKDVKSVV-LEVCNLTELSSLCFHFPEI-KLLELFLQRCVAWNAQCLTEFRI   92 (358)
Q Consensus        15 ~~ip~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~-~~l~~l~~L~~L~~~~~~l-~~l~~~~~~~~~~~~~~L~~l~i   92 (358)
                      +.||.++   ..++++|+|++ +.++       .++ ..+.++++|++|++..+.+ +.++.  +  ....+.++.++.+
T Consensus        22 t~iP~~l---~~~l~~L~Ls~-N~i~-------~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~--~--~f~~L~~l~~~l~   86 (350)
T 4ay9_X           22 TEIPSDL---PRNAIELRFVL-TKLR-------VIQKGAFSGFGDLEKIEISQNDVLEVIEA--D--VFSNLPKLHEIRI   86 (350)
T ss_dssp             CSCCTTC---CTTCSEEEEES-CCCS-------EECTTSSTTCTTCCEEEEECCTTCCEECT--T--SBCSCTTCCEEEE
T ss_pred             CccCcCc---CCCCCEEEccC-CcCC-------CcCHHHHcCCCCCCEEECcCCCCCCccCh--h--Hhhcchhhhhhhc
Confidence            5678765   36799999998 4443       333 3578999999999987765 33332  1  0002223332222


Q ss_pred             EEeCccccccccCCcccccccccCCceEEeeCCCCChHHHHhhccCccEEEeccCCCCCccCcccccCccCCcEEEeecC
Q 039808           93 VVGHDIKNIVSRVPDAVAFDYNKQGKCLRFINGENIPDAVLQILACCTAFYLDNHLHINSLSDFGVRSINGLKFCIISEC  172 (358)
Q Consensus        93 ~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~l~~~~l~~l~~L~~L~l~~~  172 (358)
                      ..+..                           ...++...+..+++|+.|++.++ .+..++...+....++..|++.++
T Consensus        87 ~~~N~---------------------------l~~l~~~~f~~l~~L~~L~l~~n-~l~~~~~~~~~~~~~l~~l~l~~~  138 (350)
T 4ay9_X           87 EKANN---------------------------LLYINPEAFQNLPNLQYLLISNT-GIKHLPDVHKIHSLQKVLLDIQDN  138 (350)
T ss_dssp             EEETT---------------------------CCEECTTSBCCCTTCCEEEEEEE-CCSSCCCCTTCCBSSCEEEEEESC
T ss_pred             ccCCc---------------------------ccccCchhhhhcccccccccccc-ccccCCchhhcccchhhhhhhccc
Confidence            11100                           01122222334555666666555 454444433444455666666655


Q ss_pred             CCceEecCCCCccccCC-CccceeecccccccccccccccCCCcCccccEEeEecCCCccccCchhhhccCCCccEEEEe
Q 039808          173 PKIETVVDGKELTTVIF-PSLENLSIHHLWNLTHICEGSVPNGSFARLRILSVHACPKLKFVFSSFMIHFMSNLEDLTVE  251 (358)
Q Consensus       173 ~~~~~~~~~~~~~~~~l-~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~l~~l~~L~~L~i~  251 (358)
                      ..+..++...   .... ..++.|.+++. .++.++.   ......+|+++.+.++..++.+++ ..++.+++|+.|+++
T Consensus       139 ~~i~~l~~~~---f~~~~~~l~~L~L~~N-~i~~i~~---~~f~~~~L~~l~l~~~n~l~~i~~-~~f~~l~~L~~LdLs  210 (350)
T 4ay9_X          139 INIHTIERNS---FVGLSFESVILWLNKN-GIQEIHN---SAFNGTQLDELNLSDNNNLEELPN-DVFHGASGPVILDIS  210 (350)
T ss_dssp             TTCCEECTTS---STTSBSSCEEEECCSS-CCCEECT---TSSTTEEEEEEECTTCTTCCCCCT-TTTTTEECCSEEECT
T ss_pred             cccccccccc---hhhcchhhhhhccccc-cccCCCh---hhccccchhHHhhccCCcccCCCH-HHhccCcccchhhcC
Confidence            5555553332   1122 24555655553 2333321   112234566666666666665533 344566667777766


Q ss_pred             cCCccccccccccccccccccCCCcceeccccccccccccCC-CCCCccEEeeeC
Q 039808          252 DCPAIEEIISEGEIIDSGCTALPRLKKLTLHYLPGLVTIWSS-AWPSLEYVSFYD  305 (358)
Q Consensus       252 ~c~~l~~i~~~~~~~~~~~~~l~~L~~L~l~~c~~L~~~~~~-~~~~L~~L~i~~  305 (358)
                      ++ .+..++         ...|.+|+.|.+.++.+++.+|.- .+++|+.+++.+
T Consensus       211 ~N-~l~~lp---------~~~~~~L~~L~~l~~~~l~~lP~l~~l~~L~~l~l~~  255 (350)
T 4ay9_X          211 RT-RIHSLP---------SYGLENLKKLRARSTYNLKKLPTLEKLVALMEASLTY  255 (350)
T ss_dssp             TS-CCCCCC---------SSSCTTCCEEECTTCTTCCCCCCTTTCCSCCEEECSC
T ss_pred             CC-CcCccC---------hhhhccchHhhhccCCCcCcCCCchhCcChhhCcCCC
Confidence            64 455554         345666666666666666666654 666666666643

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=99.36  E-value=6.6e-12  Score=112.09  Aligned_cols=193  Identities=12%  Similarity=0.125  Sum_probs=96.3

Q ss_pred             CCceEEeeCCC--CChHHHHhhccCccEEEeccCCCCCccCcccccCccCCcEEEeecCCCceEecCCCCccccCCCccc
Q 039808          116 QGKCLRFINGE--NIPDAVLQILACCTAFYLDNHLHINSLSDFGVRSINGLKFCIISECPKIETVVDGKELTTVIFPSLE  193 (358)
Q Consensus       116 ~L~~L~l~~~~--~~~~~~~~~l~~L~~L~l~~~~~~~~l~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~  193 (358)
                      .++.|.+.++.  .++......+++|+.|++.++ .+..+....+.++++|++|++++|..+..+....   ...+++|+
T Consensus        33 ~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n~~l~~~~~~~---~~~l~~L~  108 (285)
T 1ozn_A           33 ASQRIFLHGNRISHVPAASFRACRNLTILWLHSN-VLARIDAAAFTGLALLEQLDLSDNAQLRSVDPAT---FHGLGRLH  108 (285)
T ss_dssp             TCSEEECTTSCCCEECTTTTTTCTTCCEEECCSS-CCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTT---TTTCTTCC
T ss_pred             CceEEEeeCCcCCccCHHHcccCCCCCEEECCCC-ccceeCHhhcCCccCCCEEeCCCCCCccccCHHH---hcCCcCCC
Confidence            45555554432  222233344566666666665 4555433345666666666666664344332111   34456666


Q ss_pred             eeecccccccccccccccCCCcCccccEEeEecCCCccccCchhhhccCCCccEEEEecCCccccccccccccccccccC
Q 039808          194 NLSIHHLWNLTHICEGSVPNGSFARLRILSVHACPKLKFVFSSFMIHFMSNLEDLTVEDCPAIEEIISEGEIIDSGCTAL  273 (358)
Q Consensus       194 ~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~l~~l~~L~~L~i~~c~~l~~i~~~~~~~~~~~~~l  273 (358)
                      +|+++++.- ..+.  +...+.+++|++|++.++. ++.+++ ..++.+++|+.|+++++ .+..++.      ..+..+
T Consensus       109 ~L~l~~n~l-~~~~--~~~~~~l~~L~~L~l~~n~-l~~~~~-~~~~~l~~L~~L~l~~n-~l~~~~~------~~~~~l  176 (285)
T 1ozn_A          109 TLHLDRCGL-QELG--PGLFRGLAALQYLYLQDNA-LQALPD-DTFRDLGNLTHLFLHGN-RISSVPE------RAFRGL  176 (285)
T ss_dssp             EEECTTSCC-CCCC--TTTTTTCTTCCEEECCSSC-CCCCCT-TTTTTCTTCCEEECCSS-CCCEECT------TTTTTC
T ss_pred             EEECCCCcC-CEEC--HhHhhCCcCCCEEECCCCc-ccccCH-hHhccCCCccEEECCCC-cccccCH------HHhcCc
Confidence            666665432 2211  1123345666666666652 333322 23455666666666664 3333330      124456


Q ss_pred             CCcceeccccccccccccCC---CCCCccEEeeeCCcCCCccCCC-CCCCCCeeEEE
Q 039808          274 PRLKKLTLHYLPGLVTIWSS---AWPSLEYVSFYDCPRLKNIGLG-SNLKHSVMEIK  326 (358)
Q Consensus       274 ~~L~~L~l~~c~~L~~~~~~---~~~~L~~L~i~~C~~L~~lP~~-~~~~~~L~~~~  326 (358)
                      ++|+.|+++++ .++.+...   .+++|+.|++++| .++.+|.. ...+++|+.+.
T Consensus       177 ~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~  231 (285)
T 1ozn_A          177 HSLDRLLLHQN-RVAHVHPHAFRDLGRLMTLYLFAN-NLSALPTEALAPLRALQYLR  231 (285)
T ss_dssp             TTCCEEECCSS-CCCEECTTTTTTCTTCCEEECCSS-CCSCCCHHHHTTCTTCCEEE
T ss_pred             cccCEEECCCC-cccccCHhHccCcccccEeeCCCC-cCCcCCHHHcccCcccCEEe
Confidence            66666666555 34444222   5566666666665 35555432 34455555553

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=99.35  E-value=1.1e-11  Score=114.25  Aligned_cols=202  Identities=15%  Similarity=0.117  Sum_probs=142.2

Q ss_pred             ccccccCCceEEeeCCC--C-ChHHHHhhccCccEEEeccCCCCCccCcccccCccCCcEEEeecCCCceEecCCCCccc
Q 039808          110 AFDYNKQGKCLRFINGE--N-IPDAVLQILACCTAFYLDNHLHINSLSDFGVRSINGLKFCIISECPKIETVVDGKELTT  186 (358)
Q Consensus       110 ~l~~~~~L~~L~l~~~~--~-~~~~~~~~l~~L~~L~l~~~~~~~~l~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~  186 (358)
                      .+..+.+|+.|.+.++.  + ++...+..++++..+....+..+..++...+..+++|++|++++|. +..+++..   .
T Consensus        49 ~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~l~~l~~~~f~~l~~L~~L~l~~n~-l~~~~~~~---~  124 (350)
T 4ay9_X           49 AFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTG-IKHLPDVH---K  124 (350)
T ss_dssp             SSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETTCCEECTTSBCCCTTCCEEEEEEEC-CSSCCCCT---T
T ss_pred             HHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCCcccccCchhhhhccccccccccccc-cccCCchh---h
Confidence            34445577778777764  2 3334445567777655555447888876678999999999999884 44343321   2


Q ss_pred             cCCCccceeecccccccccccccccCCCcCccccEEeEecCCCccccCchhhhccCCCccEEEEecCCcccccccccccc
Q 039808          187 VIFPSLENLSIHHLWNLTHICEGSVPNGSFARLRILSVHACPKLKFVFSSFMIHFMSNLEDLTVEDCPAIEEIISEGEII  266 (358)
Q Consensus       187 ~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~l~~l~~L~~L~i~~c~~l~~i~~~~~~~  266 (358)
                      ....++..|.+.++..+..+...... +....++.|++.++ +++.+.+.  +...++|+.|.+.++..++.++.     
T Consensus       125 ~~~~~l~~l~l~~~~~i~~l~~~~f~-~~~~~l~~L~L~~N-~i~~i~~~--~f~~~~L~~l~l~~~n~l~~i~~-----  195 (350)
T 4ay9_X          125 IHSLQKVLLDIQDNINIHTIERNSFV-GLSFESVILWLNKN-GIQEIHNS--AFNGTQLDELNLSDNNNLEELPN-----  195 (350)
T ss_dssp             CCBSSCEEEEEESCTTCCEECTTSST-TSBSSCEEEECCSS-CCCEECTT--SSTTEEEEEEECTTCTTCCCCCT-----
T ss_pred             cccchhhhhhhccccccccccccchh-hcchhhhhhccccc-cccCCChh--hccccchhHHhhccCCcccCCCH-----
Confidence            33456777888777666665322211 12246888998875 56666442  23567899999998888888872     


Q ss_pred             ccccccCCCcceeccccccccccccCCCCCCccEEeeeCCcCCCccCCCCCCCCCeeEEEe
Q 039808          267 DSGCTALPRLKKLTLHYLPGLVTIWSSAWPSLEYVSFYDCPRLKNIGLGSNLKHSVMEIKA  327 (358)
Q Consensus       267 ~~~~~~l~~L~~L~l~~c~~L~~~~~~~~~~L~~L~i~~C~~L~~lP~~~~~~~~L~~~~~  327 (358)
                       ..+..+++|+.|+++++ .++.+|...+.+|+.|.+.+|..++.+|. +..+++|+.+..
T Consensus       196 -~~f~~l~~L~~LdLs~N-~l~~lp~~~~~~L~~L~~l~~~~l~~lP~-l~~l~~L~~l~l  253 (350)
T 4ay9_X          196 -DVFHGASGPVILDISRT-RIHSLPSYGLENLKKLRARSTYNLKKLPT-LEKLVALMEASL  253 (350)
T ss_dssp             -TTTTTEECCSEEECTTS-CCCCCCSSSCTTCCEEECTTCTTCCCCCC-TTTCCSCCEEEC
T ss_pred             -HHhccCcccchhhcCCC-CcCccChhhhccchHhhhccCCCcCcCCC-chhCcChhhCcC
Confidence             24578899999999876 79999888899999999999999999995 567788888754

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=99.34  E-value=2e-11  Score=106.05  Aligned_cols=177  Identities=14%  Similarity=0.117  Sum_probs=138.7

Q ss_pred             ccCccEEEeccCCCCCccCcccccCccCCcEEEeecCCCceEecCCCCccccCCCccceeecccccccccccccccCCCc
Q 039808          136 LACCTAFYLDNHLHINSLSDFGVRSINGLKFCIISECPKIETVVDGKELTTVIFPSLENLSIHHLWNLTHICEGSVPNGS  215 (358)
Q Consensus       136 l~~L~~L~l~~~~~~~~l~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~  215 (358)
                      ..+++.|++.++ .+..++...++++++|++|++++|..++.++...   ...+++|++|++++|..++.+..  ..++.
T Consensus        30 ~~~l~~L~l~~n-~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~---f~~l~~L~~L~l~~~n~l~~i~~--~~f~~  103 (239)
T 2xwt_C           30 PPSTQTLKLIET-HLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHS---FYNLSKVTHIEIRNTRNLTYIDP--DALKE  103 (239)
T ss_dssp             CTTCCEEEEESC-CCSEECTTTTTTCTTCCEEEEECCSSCCEECTTT---EESCTTCCEEEEEEETTCCEECT--TSEEC
T ss_pred             CCcccEEEEeCC-cceEECHHHccCCCCCcEEeCCCCCCcceeCHhH---cCCCcCCcEEECCCCCCeeEcCH--HHhCC
Confidence            458999999999 7888877678999999999999987577775442   56789999999998777776532  22456


Q ss_pred             CccccEEeEecCCCccccCchhhhccCCCcc---EEEEecCCccccccccccccccccccCCCcc-eecccccccccccc
Q 039808          216 FARLRILSVHACPKLKFVFSSFMIHFMSNLE---DLTVEDCPAIEEIISEGEIIDSGCTALPRLK-KLTLHYLPGLVTIW  291 (358)
Q Consensus       216 ~~~L~~L~l~~c~~l~~l~~~~~l~~l~~L~---~L~i~~c~~l~~i~~~~~~~~~~~~~l~~L~-~L~l~~c~~L~~~~  291 (358)
                      +++|++|++.++. ++.++.   +..+++|+   .|+++++..+..++.      ..+..+++|+ .|+++++ .++.++
T Consensus       104 l~~L~~L~l~~n~-l~~lp~---~~~l~~L~~L~~L~l~~N~~l~~i~~------~~~~~l~~L~~~L~l~~n-~l~~i~  172 (239)
T 2xwt_C          104 LPLLKFLGIFNTG-LKMFPD---LTKVYSTDIFFILEITDNPYMTSIPV------NAFQGLCNETLTLKLYNN-GFTSVQ  172 (239)
T ss_dssp             CTTCCEEEEEEEC-CCSCCC---CTTCCBCCSEEEEEEESCTTCCEECT------TTTTTTBSSEEEEECCSC-CCCEEC
T ss_pred             CCCCCEEeCCCCC-Cccccc---cccccccccccEEECCCCcchhhcCc------ccccchhcceeEEEcCCC-CCcccC
Confidence            8999999999974 555532   56777887   999999877777662      2367789999 9999776 678888


Q ss_pred             CC--CCCCccEEeeeCCcCCCccCCC-CCCC-CCeeEEEecc
Q 039808          292 SS--AWPSLEYVSFYDCPRLKNIGLG-SNLK-HSVMEIKAEK  329 (358)
Q Consensus       292 ~~--~~~~L~~L~i~~C~~L~~lP~~-~~~~-~~L~~~~~~~  329 (358)
                      ..  ..++|++|++++|+.++.+|.. ...+ ++|+.+....
T Consensus       173 ~~~~~~~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~  214 (239)
T 2xwt_C          173 GYAFNGTKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQ  214 (239)
T ss_dssp             TTTTTTCEEEEEECTTCTTCCEECTTTTTTCSBCCSEEECTT
T ss_pred             HhhcCCCCCCEEEcCCCCCcccCCHHHhhccccCCcEEECCC
Confidence            76  4489999999999889999765 4567 8899887653

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=99.33  E-value=2e-11  Score=108.38  Aligned_cols=194  Identities=18%  Similarity=0.160  Sum_probs=132.6

Q ss_pred             CCceEEeeCCC--CChHHHHhhccCccEEEeccCCCCCccCcccccCccCCcEEEeecCCCceEecCCCCccccCCCccc
Q 039808          116 QGKCLRFINGE--NIPDAVLQILACCTAFYLDNHLHINSLSDFGVRSINGLKFCIISECPKIETVVDGKELTTVIFPSLE  193 (358)
Q Consensus       116 ~L~~L~l~~~~--~~~~~~~~~l~~L~~L~l~~~~~~~~l~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~  193 (358)
                      .++.|.+.++.  .++......+++|+.|++.++ .+..++...+.++++|++|++++|. +..++...   ...+++|+
T Consensus        29 ~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~---~~~l~~L~  103 (276)
T 2z62_A           29 STKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRC-EIQTIEDGAYQSLSHLSTLILTGNP-IQSLALGA---FSGLSSLQ  103 (276)
T ss_dssp             TCCEEECTTCCCCEECTTTTTTCTTCSEEECTTC-CCCEECTTTTTTCTTCCEEECTTCC-CCEECTTT---TTTCTTCC
T ss_pred             CccEEECCCCcccccCHhHhccccCCcEEECCCC-cCCccCHHHccCCcCCCEEECCCCc-cCccChhh---hcCCcccc
Confidence            67888887664  333334556788999999988 7777765568889999999998875 34443221   56678999


Q ss_pred             eeecccccccccccccccCCCcCccccEEeEecCCCccccCchhhhccCCCccEEEEecCCccccccccccccccccccC
Q 039808          194 NLSIHHLWNLTHICEGSVPNGSFARLRILSVHACPKLKFVFSSFMIHFMSNLEDLTVEDCPAIEEIISEGEIIDSGCTAL  273 (358)
Q Consensus       194 ~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~l~~l~~L~~L~i~~c~~l~~i~~~~~~~~~~~~~l  273 (358)
                      +|.+.++.. ..+.  +...+.+++|++|+++++. ++.+..+..++.+++|+.|+++++. +..++.      ..+..+
T Consensus       104 ~L~l~~n~l-~~~~--~~~~~~l~~L~~L~l~~n~-l~~~~l~~~~~~l~~L~~L~Ls~N~-l~~~~~------~~~~~l  172 (276)
T 2z62_A          104 KLVAVETNL-ASLE--NFPIGHLKTLKELNVAHNL-IQSFKLPEYFSNLTNLEHLDLSSNK-IQSIYC------TDLRVL  172 (276)
T ss_dssp             EEECTTSCC-CCST--TCCCTTCTTCCEEECCSSC-CCCCCCCGGGGGCTTCCEEECCSSC-CCEECG------GGGHHH
T ss_pred             EEECCCCCc-cccC--chhcccCCCCCEEECcCCc-cceecCchhhccCCCCCEEECCCCC-CCcCCH------HHhhhh
Confidence            999987643 3321  2235678899999998874 4443212456788999999999873 444331      124445


Q ss_pred             CCcc----eeccccccccccccCC--CCCCccEEeeeCCcCCCccCCCC-CCCCCeeEEEe
Q 039808          274 PRLK----KLTLHYLPGLVTIWSS--AWPSLEYVSFYDCPRLKNIGLGS-NLKHSVMEIKA  327 (358)
Q Consensus       274 ~~L~----~L~l~~c~~L~~~~~~--~~~~L~~L~i~~C~~L~~lP~~~-~~~~~L~~~~~  327 (358)
                      ++|+    .|+++++ .++.++..  ...+|++|++++|. ++.+|... ..+++|+.+.-
T Consensus       173 ~~L~~l~l~L~ls~n-~l~~~~~~~~~~~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~l  231 (276)
T 2z62_A          173 HQMPLLNLSLDLSLN-PMNFIQPGAFKEIRLKELALDTNQ-LKSVPDGIFDRLTSLQKIWL  231 (276)
T ss_dssp             HTCTTCCEEEECCSS-CCCEECTTSSCSCCEEEEECCSSC-CSCCCTTTTTTCCSCCEEEC
T ss_pred             hhccccceeeecCCC-cccccCccccCCCcccEEECCCCc-eeecCHhHhcccccccEEEc
Confidence            5555    6777665 57777665  55689999999875 88887764 56788887754

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=99.33  E-value=2.2e-11  Score=108.01  Aligned_cols=180  Identities=16%  Similarity=0.170  Sum_probs=116.2

Q ss_pred             ccccccCCceEEeeCCCCChHHHHhhccCccEEEeccCCCCCccCcccccCccCCcEEEeecCCCceEecCCCCccccCC
Q 039808          110 AFDYNKQGKCLRFINGENIPDAVLQILACCTAFYLDNHLHINSLSDFGVRSINGLKFCIISECPKIETVVDGKELTTVIF  189 (358)
Q Consensus       110 ~l~~~~~L~~L~l~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~l~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l  189 (358)
                      ....+.+++.|.+.++.-........+++|+.|++.++ .+..++  .++.+++|++|++++|. +..++...   ...+
T Consensus        36 ~~~~l~~L~~L~l~~~~i~~~~~l~~l~~L~~L~l~~n-~l~~~~--~l~~l~~L~~L~L~~n~-l~~~~~~~---~~~l  108 (272)
T 3rfs_A           36 TQNELNSIDQIIANNSDIKSVQGIQYLPNVRYLALGGN-KLHDIS--ALKELTNLTYLILTGNQ-LQSLPNGV---FDKL  108 (272)
T ss_dssp             CHHHHTTCCEEECTTSCCCCCTTGGGCTTCCEEECTTS-CCCCCG--GGTTCTTCCEEECTTSC-CCCCCTTT---TTTC
T ss_pred             ccccccceeeeeeCCCCcccccccccCCCCcEEECCCC-CCCCch--hhcCCCCCCEEECCCCc-cCccChhH---hcCC
Confidence            44445567777776654211122445788888888887 555554  47788888888888873 33332221   4567


Q ss_pred             CccceeecccccccccccccccCCCcCccccEEeEecCCCccccCchhhhccCCCccEEEEecCCccccccccccccccc
Q 039808          190 PSLENLSIHHLWNLTHICEGSVPNGSFARLRILSVHACPKLKFVFSSFMIHFMSNLEDLTVEDCPAIEEIISEGEIIDSG  269 (358)
Q Consensus       190 ~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~l~~l~~L~~L~i~~c~~l~~i~~~~~~~~~~  269 (358)
                      ++|++|+++++. ++.+.  +...+.+++|++|++.+| .++.+++ ..++.+++|+.|++++| .+..++.      ..
T Consensus       109 ~~L~~L~L~~n~-l~~~~--~~~~~~l~~L~~L~L~~n-~l~~~~~-~~~~~l~~L~~L~l~~n-~l~~~~~------~~  176 (272)
T 3rfs_A          109 TNLKELVLVENQ-LQSLP--DGVFDKLTNLTYLNLAHN-QLQSLPK-GVFDKLTNLTELDLSYN-QLQSLPE------GV  176 (272)
T ss_dssp             TTCCEEECTTSC-CCCCC--TTTTTTCTTCCEEECCSS-CCCCCCT-TTTTTCTTCCEEECCSS-CCCCCCT------TT
T ss_pred             cCCCEEECCCCc-CCccC--HHHhccCCCCCEEECCCC-ccCccCH-HHhccCccCCEEECCCC-CcCccCH------HH
Confidence            888888888764 33321  112356788888888887 4555533 34567888888888887 3444431      22


Q ss_pred             cccCCCcceeccccccccccccCC---CCCCccEEeeeCCcCC
Q 039808          270 CTALPRLKKLTLHYLPGLVTIWSS---AWPSLEYVSFYDCPRL  309 (358)
Q Consensus       270 ~~~l~~L~~L~l~~c~~L~~~~~~---~~~~L~~L~i~~C~~L  309 (358)
                      +..+++|+.|+++++ .++.++..   .+++|+.|++++++-.
T Consensus       177 ~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~l~~N~~~  218 (272)
T 3rfs_A          177 FDKLTQLKDLRLYQN-QLKSVPDGVFDRLTSLQYIWLHDNPWD  218 (272)
T ss_dssp             TTTCTTCCEEECCSS-CCSCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred             hcCCccCCEEECCCC-cCCccCHHHHhCCcCCCEEEccCCCcc
Confidence            467788888888776 56666654   6888888888887533

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=99.31  E-value=1.3e-12  Score=128.47  Aligned_cols=285  Identities=9%  Similarity=0.040  Sum_probs=156.3

Q ss_pred             cccceeccCCCCccC-------CchhhcCccccEEEeeecCCCccee-------------c-------ccchhhhhhcCC
Q 039808            4 SCNVEYVKMPPQLIS-------SGIISRLHALKTLSIVVYPGDKRWY-------------K-------DVKSVVLEVCNL   56 (358)
Q Consensus         4 l~~L~~l~L~~~~ip-------~~~i~~L~~L~~L~l~~~~~~~~~~-------------~-------~~~~~~~~l~~l   56 (358)
                      +.+|++|+++...+.       ..++.++++|++|+++++ .+..+.             .       ........+..+
T Consensus       191 ~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~-~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~  269 (592)
T 3ogk_B          191 NTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDF-EILELVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFP  269 (592)
T ss_dssp             CCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSC-BGGGGHHHHHHCTTCCEEEECBCCCCTTCTTSSSCCCCC
T ss_pred             CCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCc-cHHHHHHHHhhhhHHHhhcccccccccchHHHHHHhhcc
Confidence            456777777663332       112456777888877762 221100             0       000112234555


Q ss_pred             CCCceEEEEccCchhHHHHHhhhccccccccceEEEEEeCccccccccCCcccccccccCCceEEeeCCC--CChHHHHh
Q 039808           57 TELSSLCFHFPEIKLLELFLQRCVAWNAQCLTEFRIVVGHDIKNIVSRVPDAVAFDYNKQGKCLRFINGE--NIPDAVLQ  134 (358)
Q Consensus        57 ~~L~~L~~~~~~l~~l~~~~~~~~~~~~~~L~~l~i~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~--~~~~~~~~  134 (358)
                      ++|+.+.+.......++..+.     .+++|+++.+.   ...  +....-...+..+++|+.|.+.++.  .....+..
T Consensus       270 ~~L~~L~l~~~~~~~l~~~~~-----~~~~L~~L~Ls---~~~--l~~~~~~~~~~~~~~L~~L~L~~~~~~~~l~~~~~  339 (592)
T 3ogk_B          270 RKLCRLGLSYMGPNEMPILFP-----FAAQIRKLDLL---YAL--LETEDHCTLIQKCPNLEVLETRNVIGDRGLEVLAQ  339 (592)
T ss_dssp             TTCCEEEETTCCTTTGGGGGG-----GGGGCCEEEET---TCC--CCHHHHHHHHTTCTTCCEEEEEGGGHHHHHHHHHH
T ss_pred             ccccccCccccchhHHHHHHh-----hcCCCcEEecC---CCc--CCHHHHHHHHHhCcCCCEEeccCccCHHHHHHHHH
Confidence            555555553333333443323     45677777762   110  0000000123556688888887332  11123345


Q ss_pred             hccCccEEEecc----------CCCCCccCcc-cccCccCCcEEEeecCCCceE-ecCCCCccccCCCccceeecccc--
Q 039808          135 ILACCTAFYLDN----------HLHINSLSDF-GVRSINGLKFCIISECPKIET-VVDGKELTTVIFPSLENLSIHHL--  200 (358)
Q Consensus       135 ~l~~L~~L~l~~----------~~~~~~l~~~-~l~~l~~L~~L~l~~~~~~~~-~~~~~~~~~~~l~~L~~L~l~~~--  200 (358)
                      .+++|+.|++.+          |..+...... ....+++|++|++..+ .+.. .+..   -...+++|++|.+.++  
T Consensus       340 ~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~-~l~~~~~~~---l~~~~~~L~~L~l~~~~~  415 (592)
T 3ogk_B          340 YCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVS-DITNESLES---IGTYLKNLCDFRLVLLDR  415 (592)
T ss_dssp             HCTTCCEEEEECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEEEES-CCCHHHHHH---HHHHCCSCCEEEEEECSC
T ss_pred             hCCCCCEEEeecCccccccccccCccCHHHHHHHHhhCccCeEEEeecC-CccHHHHHH---HHhhCCCCcEEEEeecCC
Confidence            578899999985          5444432111 1356899999999443 4432 1111   0123789999999854  


Q ss_pred             -ccccccccc---ccCCCcCccccEEeEecCCC-ccccCchhhhccCCCccEEEEecCCccccccccccccccccccCCC
Q 039808          201 -WNLTHICEG---SVPNGSFARLRILSVHACPK-LKFVFSSFMIHFMSNLEDLTVEDCPAIEEIISEGEIIDSGCTALPR  275 (358)
Q Consensus       201 -~~l~~~~~~---~~~~~~~~~L~~L~l~~c~~-l~~l~~~~~l~~l~~L~~L~i~~c~~l~~i~~~~~~~~~~~~~l~~  275 (358)
                       ..++..+..   +.....+++|++|+++.|.. +.......+...+++|+.|++++|. +....     .......+++
T Consensus       416 ~n~l~~~p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n~-l~~~~-----~~~~~~~~~~  489 (592)
T 3ogk_B          416 EERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVG-ESDEG-----LMEFSRGCPN  489 (592)
T ss_dssp             CSCCSSCCCHHHHHHHHHHCTTCCEEEEECCGGGCCHHHHHHHHHSCTTCCEEEECSCC-SSHHH-----HHHHHTCCTT
T ss_pred             CccccCchHHHHHHHHHHhCCCCCEEEEecCCCCccHHHHHHHHHhCccceEeeccCCC-CCHHH-----HHHHHhcCcc
Confidence             344432100   00023478999999988764 4443333344568999999999875 32210     0012457899


Q ss_pred             cceeccccccccccc--cCC--CCCCccEEeeeCCcCCCc
Q 039808          276 LKKLTLHYLPGLVTI--WSS--AWPSLEYVSFYDCPRLKN  311 (358)
Q Consensus       276 L~~L~l~~c~~L~~~--~~~--~~~~L~~L~i~~C~~L~~  311 (358)
                      |++|++++|+ ++..  +..  .+++|++|++++|. ++.
T Consensus       490 L~~L~l~~n~-l~~~~~~~~~~~l~~L~~L~ls~n~-it~  527 (592)
T 3ogk_B          490 LQKLEMRGCC-FSERAIAAAVTKLPSLRYLWVQGYR-ASM  527 (592)
T ss_dssp             CCEEEEESCC-CBHHHHHHHHHHCSSCCEEEEESCB-CCT
T ss_pred             cCeeeccCCC-CcHHHHHHHHHhcCccCeeECcCCc-CCH
Confidence            9999999997 5432  211  68999999999997 443

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=99.29  E-value=2.5e-11  Score=108.77  Aligned_cols=151  Identities=18%  Similarity=0.124  Sum_probs=66.4

Q ss_pred             hccCccEEEeccCCCCCccCcccccCccCCcEEEeecCCCceEecCCCCccccCCCccceeecccccccccccccccCCC
Q 039808          135 ILACCTAFYLDNHLHINSLSDFGVRSINGLKFCIISECPKIETVVDGKELTTVIFPSLENLSIHHLWNLTHICEGSVPNG  214 (358)
Q Consensus       135 ~l~~L~~L~l~~~~~~~~l~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~  214 (358)
                      .+++|+.|++.++ .+..++.  .+.+++|++|++++|. +..++..    ...+++|++|.+++.. ++.+.  +..++
T Consensus        53 ~l~~L~~L~L~~n-~l~~~~~--~~~l~~L~~L~Ls~N~-l~~l~~~----~~~l~~L~~L~l~~N~-l~~l~--~~~~~  121 (290)
T 1p9a_G           53 PYTRLTQLNLDRA-ELTKLQV--DGTLPVLGTLDLSHNQ-LQSLPLL----GQTLPALTVLDVSFNR-LTSLP--LGALR  121 (290)
T ss_dssp             TCTTCCEEECTTS-CCCEEEC--CSCCTTCCEEECCSSC-CSSCCCC----TTTCTTCCEEECCSSC-CCCCC--SSTTT
T ss_pred             cCCCCCEEECCCC-ccCcccC--CCCCCcCCEEECCCCc-CCcCchh----hccCCCCCEEECCCCc-CcccC--HHHHc
Confidence            3455555555555 4444432  2455555555555542 2223221    2344555555554432 22221  11123


Q ss_pred             cCccccEEeEecCCCccccCchhhhccCCCccEEEEecCCccccccccccccccccccCCCcceeccccccccccccCC-
Q 039808          215 SFARLRILSVHACPKLKFVFSSFMIHFMSNLEDLTVEDCPAIEEIISEGEIIDSGCTALPRLKKLTLHYLPGLVTIWSS-  293 (358)
Q Consensus       215 ~~~~L~~L~l~~c~~l~~l~~~~~l~~l~~L~~L~i~~c~~l~~i~~~~~~~~~~~~~l~~L~~L~l~~c~~L~~~~~~-  293 (358)
                      .+++|++|+++++ +++.+++ ..+..+++|+.|+++++ .++.++.      ..+..+++|+.|+++++ .++.++.. 
T Consensus       122 ~l~~L~~L~L~~N-~l~~~~~-~~~~~l~~L~~L~L~~N-~l~~l~~------~~~~~l~~L~~L~L~~N-~l~~ip~~~  191 (290)
T 1p9a_G          122 GLGELQELYLKGN-ELKTLPP-GLLTPTPKLEKLSLANN-NLTELPA------GLLNGLENLDTLLLQEN-SLYTIPKGF  191 (290)
T ss_dssp             TCTTCCEEECTTS-CCCCCCT-TTTTTCTTCCEEECTTS-CCSCCCT------TTTTTCTTCCEEECCSS-CCCCCCTTT
T ss_pred             CCCCCCEEECCCC-CCCccCh-hhcccccCCCEEECCCC-cCCccCH------HHhcCcCCCCEEECCCC-cCCccChhh
Confidence            4455555555554 2333322 23344555555555543 2333330      11234455555555443 44445444 


Q ss_pred             -CCCCccEEeeeCC
Q 039808          294 -AWPSLEYVSFYDC  306 (358)
Q Consensus       294 -~~~~L~~L~i~~C  306 (358)
                       ..++|+.+++.++
T Consensus       192 ~~~~~L~~l~L~~N  205 (290)
T 1p9a_G          192 FGSHLLPFAFLHGN  205 (290)
T ss_dssp             TTTCCCSEEECCSC
T ss_pred             cccccCCeEEeCCC
Confidence             4445555555543

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=99.29  E-value=4.4e-11  Score=105.92  Aligned_cols=174  Identities=16%  Similarity=0.226  Sum_probs=90.7

Q ss_pred             CCceEEeeCCC--CChHHHHhhccCccEEEeccCCCCCccCcccccCccCCcEEEeecCCCceEecCCCCccccCCCccc
Q 039808          116 QGKCLRFINGE--NIPDAVLQILACCTAFYLDNHLHINSLSDFGVRSINGLKFCIISECPKIETVVDGKELTTVIFPSLE  193 (358)
Q Consensus       116 ~L~~L~l~~~~--~~~~~~~~~l~~L~~L~l~~~~~~~~l~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~  193 (358)
                      .++.|.+.++.  .++......+++|+.|++.++ .+..++...+.++++|++|++++|. +..++..   ....+++|+
T Consensus        38 ~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~i~~~~~~~l~~L~~L~l~~n~-l~~~~~~---~~~~l~~L~  112 (270)
T 2o6q_A           38 DTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDN-KLQTLPAGIFKELKNLETLWVTDNK-LQALPIG---VFDQLVNLA  112 (270)
T ss_dssp             TCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSS-CCSCCCTTTTSSCTTCCEEECCSSC-CCCCCTT---TTTTCSSCC
T ss_pred             CCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCC-ccCeeChhhhcCCCCCCEEECCCCc-CCcCCHh---HcccccCCC
Confidence            44555554432  233323344566666666665 5555554345666667777776653 3323221   134456666


Q ss_pred             eeecccccccccccccccCCCcCccccEEeEecCCCccccCchhhhccCCCccEEEEecCCccccccccccccccccccC
Q 039808          194 NLSIHHLWNLTHICEGSVPNGSFARLRILSVHACPKLKFVFSSFMIHFMSNLEDLTVEDCPAIEEIISEGEIIDSGCTAL  273 (358)
Q Consensus       194 ~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~l~~l~~L~~L~i~~c~~l~~i~~~~~~~~~~~~~l  273 (358)
                      +|.++++. ++.+.  +..++.+++|++|+++++ .++.+++ ..++.+++|+.|+++++ .+..++.      ..+..+
T Consensus       113 ~L~l~~n~-l~~~~--~~~~~~l~~L~~L~Ls~n-~l~~~~~-~~~~~l~~L~~L~L~~n-~l~~~~~------~~~~~l  180 (270)
T 2o6q_A          113 ELRLDRNQ-LKSLP--PRVFDSLTKLTYLSLGYN-ELQSLPK-GVFDKLTSLKELRLYNN-QLKRVPE------GAFDKL  180 (270)
T ss_dssp             EEECCSSC-CCCCC--TTTTTTCTTCCEEECCSS-CCCCCCT-TTTTTCTTCCEEECCSS-CCSCCCT------TTTTTC
T ss_pred             EEECCCCc-cCeeC--HHHhCcCcCCCEEECCCC-cCCccCH-hHccCCcccceeEecCC-cCcEeCh------hHhccC
Confidence            66666542 22221  111345566677766665 3444322 23456667777776665 3333320      124456


Q ss_pred             CCcceeccccccccccccCC---CCCCccEEeeeCCc
Q 039808          274 PRLKKLTLHYLPGLVTIWSS---AWPSLEYVSFYDCP  307 (358)
Q Consensus       274 ~~L~~L~l~~c~~L~~~~~~---~~~~L~~L~i~~C~  307 (358)
                      ++|+.|+++++ .++.++..   .+++|+.|+++++|
T Consensus       181 ~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~l~~N~  216 (270)
T 2o6q_A          181 TELKTLKLDNN-QLKRVPEGAFDSLEKLKMLQLQENP  216 (270)
T ss_dssp             TTCCEEECCSS-CCSCCCTTTTTTCTTCCEEECCSSC
T ss_pred             CCcCEEECCCC-cCCcCCHHHhccccCCCEEEecCCC
Confidence            66777777655 55555554   46666777766654

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=99.29  E-value=6.6e-11  Score=116.96  Aligned_cols=82  Identities=17%  Similarity=0.117  Sum_probs=57.4

Q ss_pred             hccCCCccEEEEecCCccccccccccccccccccCCCcceeccccccccccccCC---CCCCccEEeeeCCcCCCccCCC
Q 039808          239 IHFMSNLEDLTVEDCPAIEEIISEGEIIDSGCTALPRLKKLTLHYLPGLVTIWSS---AWPSLEYVSFYDCPRLKNIGLG  315 (358)
Q Consensus       239 l~~l~~L~~L~i~~c~~l~~i~~~~~~~~~~~~~l~~L~~L~l~~c~~L~~~~~~---~~~~L~~L~i~~C~~L~~lP~~  315 (358)
                      +..+++|+.|+++++.....+.      ...+..+++|+.|+++++ .++.++..   .+++|++|+++++ +++.+|..
T Consensus       465 ~~~~~~L~~L~Ls~N~~~~~~~------~~~~~~l~~L~~L~Ls~N-~L~~l~~~~f~~l~~L~~L~Ls~N-~l~~l~~~  536 (635)
T 4g8a_A          465 FNGLSSLEVLKMAGNSFQENFL------PDIFTELRNLTFLDLSQC-QLEQLSPTAFNSLSSLQVLNMSHN-NFFSLDTF  536 (635)
T ss_dssp             TTTCTTCCEEECTTCEEGGGEE------CSCCTTCTTCCEEECTTS-CCCEECTTTTTTCTTCCEEECTTS-CCCBCCCG
T ss_pred             cccchhhhhhhhhhcccccccC------chhhhhccccCEEECCCC-ccCCcChHHHcCCCCCCEEECCCC-cCCCCChh
Confidence            3455666666666554443322      134677889999999887 67777655   7899999999997 58888654


Q ss_pred             -CCCCCCeeEEEec
Q 039808          316 -SNLKHSVMEIKAE  328 (358)
Q Consensus       316 -~~~~~~L~~~~~~  328 (358)
                       +..+++|+.++..
T Consensus       537 ~~~~l~~L~~L~Ls  550 (635)
T 4g8a_A          537 PYKCLNSLQVLDYS  550 (635)
T ss_dssp             GGTTCTTCCEEECT
T ss_pred             HHhCCCCCCEEECC
Confidence             5667888888653

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=99.28  E-value=9.6e-11  Score=104.93  Aligned_cols=188  Identities=15%  Similarity=0.137  Sum_probs=140.8

Q ss_pred             cCCceEEeeCCC--CChHHHHhhccCccEEEeccCCCCCccCcccccCccCCcEEEeecCCCceEecCCCCccccCCCcc
Q 039808          115 KQGKCLRFINGE--NIPDAVLQILACCTAFYLDNHLHINSLSDFGVRSINGLKFCIISECPKIETVVDGKELTTVIFPSL  192 (358)
Q Consensus       115 ~~L~~L~l~~~~--~~~~~~~~~l~~L~~L~l~~~~~~~~l~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L  192 (358)
                      .+++.+.+.+..  .+|..   ..++++.|++.++ .+..+....+.++++|++|++++|. +..++..     ..+++|
T Consensus        10 ~~l~~l~~~~~~l~~ip~~---~~~~l~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~-----~~l~~L   79 (290)
T 1p9a_G           10 ASHLEVNCDKRNLTALPPD---LPKDTTILHLSEN-LLYTFSLATLMPYTRLTQLNLDRAE-LTKLQVD-----GTLPVL   79 (290)
T ss_dssp             TTCCEEECTTSCCSSCCSC---CCTTCCEEECTTS-CCSEEEGGGGTTCTTCCEEECTTSC-CCEEECC-----SCCTTC
T ss_pred             CCccEEECCCCCCCcCCCC---CCCCCCEEEcCCC-cCCccCHHHhhcCCCCCEEECCCCc-cCcccCC-----CCCCcC
Confidence            355666655432  34432   2468899999998 6777765568999999999999984 5555332     478999


Q ss_pred             ceeecccccccccccccccCCCcCccccEEeEecCCCccccCchhhhccCCCccEEEEecCCcccccccccccccccccc
Q 039808          193 ENLSIHHLWNLTHICEGSVPNGSFARLRILSVHACPKLKFVFSSFMIHFMSNLEDLTVEDCPAIEEIISEGEIIDSGCTA  272 (358)
Q Consensus       193 ~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~l~~l~~L~~L~i~~c~~l~~i~~~~~~~~~~~~~  272 (358)
                      ++|++++. .++.+   +.....+++|++|+++++ +++.+++ ..+..+++|+.|+++++ .+..++.      ..+..
T Consensus        80 ~~L~Ls~N-~l~~l---~~~~~~l~~L~~L~l~~N-~l~~l~~-~~~~~l~~L~~L~L~~N-~l~~~~~------~~~~~  146 (290)
T 1p9a_G           80 GTLDLSHN-QLQSL---PLLGQTLPALTVLDVSFN-RLTSLPL-GALRGLGELQELYLKGN-ELKTLPP------GLLTP  146 (290)
T ss_dssp             CEEECCSS-CCSSC---CCCTTTCTTCCEEECCSS-CCCCCCS-STTTTCTTCCEEECTTS-CCCCCCT------TTTTT
T ss_pred             CEEECCCC-cCCcC---chhhccCCCCCEEECCCC-cCcccCH-HHHcCCCCCCEEECCCC-CCCccCh------hhccc
Confidence            99999886 34444   333467899999999987 5666544 35678999999999987 5555541      23567


Q ss_pred             CCCcceeccccccccccccCC---CCCCccEEeeeCCcCCCccCCCCCCCCCeeEEEe
Q 039808          273 LPRLKKLTLHYLPGLVTIWSS---AWPSLEYVSFYDCPRLKNIGLGSNLKHSVMEIKA  327 (358)
Q Consensus       273 l~~L~~L~l~~c~~L~~~~~~---~~~~L~~L~i~~C~~L~~lP~~~~~~~~L~~~~~  327 (358)
                      +++|+.|+++++ .++.++..   .+++|+.|+++++ .++.+|.+....++|+.+.-
T Consensus       147 l~~L~~L~L~~N-~l~~l~~~~~~~l~~L~~L~L~~N-~l~~ip~~~~~~~~L~~l~L  202 (290)
T 1p9a_G          147 TPKLEKLSLANN-NLTELPAGLLNGLENLDTLLLQEN-SLYTIPKGFFGSHLLPFAFL  202 (290)
T ss_dssp             CTTCCEEECTTS-CCSCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCCCSEEEC
T ss_pred             ccCCCEEECCCC-cCCccCHHHhcCcCCCCEEECCCC-cCCccChhhcccccCCeEEe
Confidence            899999999776 78888876   6899999999997 58999999888888888754

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=99.27  E-value=5.5e-12  Score=114.25  Aligned_cols=198  Identities=16%  Similarity=0.134  Sum_probs=113.6

Q ss_pred             cCCceEEeeCCC---CChHHH-HhhccCccEEEeccCCCCCccCcccccCc-----cCCcEEEeecCCCceEecCCCCcc
Q 039808          115 KQGKCLRFINGE---NIPDAV-LQILACCTAFYLDNHLHINSLSDFGVRSI-----NGLKFCIISECPKIETVVDGKELT  185 (358)
Q Consensus       115 ~~L~~L~l~~~~---~~~~~~-~~~l~~L~~L~l~~~~~~~~l~~~~l~~l-----~~L~~L~l~~~~~~~~~~~~~~~~  185 (358)
                      .+|+.|.+.++.   ..+..+ ...+++|+.|++.++ .+..++. .++.+     ++|++|++++|.. ..++..   .
T Consensus        95 ~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~-~~~~l~~~~~~~L~~L~L~~N~l-~~~~~~---~  168 (312)
T 1wwl_A           95 SGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNV-SWATRDA-WLAELQQWLKPGLKVLSIAQAHS-LNFSCE---Q  168 (312)
T ss_dssp             SCCCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESC-BCSSSSS-HHHHHHTTCCTTCCEEEEESCSC-CCCCTT---T
T ss_pred             CCccEEEccCCcccchhHHHHHHhcCCCccEEEccCC-CCcchhH-HHHHHHHhhcCCCcEEEeeCCCC-ccchHH---H
Confidence            355666655542   122222 144666777777666 4544432 34444     6777777776643 222211   1


Q ss_pred             ccCCCccceeeccccccccccccc-ccCCCcCccccEEeEecCCCccccC--chhhhccCCCccEEEEecCCcccccccc
Q 039808          186 TVIFPSLENLSIHHLWNLTHICEG-SVPNGSFARLRILSVHACPKLKFVF--SSFMIHFMSNLEDLTVEDCPAIEEIISE  262 (358)
Q Consensus       186 ~~~l~~L~~L~l~~~~~l~~~~~~-~~~~~~~~~L~~L~l~~c~~l~~l~--~~~~l~~l~~L~~L~i~~c~~l~~i~~~  262 (358)
                      ...+++|++|+++++.-.+.+... ....+.+++|++|+++++. ++.++  +..++..+++|+.|+++++. +...+. 
T Consensus       169 ~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~-  245 (312)
T 1wwl_A          169 VRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAG-METPSGVCSALAAARVQLQGLDLSHNS-LRDAAG-  245 (312)
T ss_dssp             CCCCSSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSC-CCCHHHHHHHHHHTTCCCSEEECTTSC-CCSSCC-
T ss_pred             hccCCCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCc-CcchHHHHHHHHhcCCCCCEEECCCCc-CCcccc-
Confidence            445677777777766533221100 1112456788888887763 44221  12344567888888888764 332210 


Q ss_pred             ccccccccccCCCcceeccccccccccccCCCCCCccEEeeeCCcCCCccCCCCCCCCCeeEEEec
Q 039808          263 GEIIDSGCTALPRLKKLTLHYLPGLVTIWSSAWPSLEYVSFYDCPRLKNIGLGSNLKHSVMEIKAE  328 (358)
Q Consensus       263 ~~~~~~~~~~l~~L~~L~l~~c~~L~~~~~~~~~~L~~L~i~~C~~L~~lP~~~~~~~~L~~~~~~  328 (358)
                          ......+++|+.|+++++ .++.+|....++|++|+++++ +++.+|. ...+++|+.++-.
T Consensus       246 ----~~~~~~l~~L~~L~Ls~N-~l~~ip~~~~~~L~~L~Ls~N-~l~~~p~-~~~l~~L~~L~L~  304 (312)
T 1wwl_A          246 ----APSCDWPSQLNSLNLSFT-GLKQVPKGLPAKLSVLDLSYN-RLDRNPS-PDELPQVGNLSLK  304 (312)
T ss_dssp             ----CSCCCCCTTCCEEECTTS-CCSSCCSSCCSEEEEEECCSS-CCCSCCC-TTTSCEEEEEECT
T ss_pred             ----hhhhhhcCCCCEEECCCC-ccChhhhhccCCceEEECCCC-CCCCChh-HhhCCCCCEEecc
Confidence                012345678888888776 577776662378888888887 5777777 6677777777543

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=99.27  E-value=4.8e-11  Score=107.86  Aligned_cols=175  Identities=18%  Similarity=0.232  Sum_probs=120.9

Q ss_pred             ccccccCCceEEeeCCC--CChHHHHhhccCccEEEeccCCCCCccCcccccCccCCcEEEeecCCCceEecCCCCcccc
Q 039808          110 AFDYNKQGKCLRFINGE--NIPDAVLQILACCTAFYLDNHLHINSLSDFGVRSINGLKFCIISECPKIETVVDGKELTTV  187 (358)
Q Consensus       110 ~l~~~~~L~~L~l~~~~--~~~~~~~~~l~~L~~L~l~~~~~~~~l~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~  187 (358)
                      .+..+++|+.|.+.++.  .++.  ...+++|+.|++.++ .+..++  .+..+++|++|++++|. +..++     ...
T Consensus        58 ~~~~l~~L~~L~L~~n~i~~~~~--~~~l~~L~~L~L~~n-~l~~~~--~~~~l~~L~~L~l~~n~-l~~~~-----~l~  126 (308)
T 1h6u_A           58 GVQYLNNLIGLELKDNQITDLAP--LKNLTKITELELSGN-PLKNVS--AIAGLQSIKTLDLTSTQ-ITDVT-----PLA  126 (308)
T ss_dssp             TGGGCTTCCEEECCSSCCCCCGG--GTTCCSCCEEECCSC-CCSCCG--GGTTCTTCCEEECTTSC-CCCCG-----GGT
T ss_pred             hhhccCCCCEEEccCCcCCCChh--HccCCCCCEEEccCC-cCCCch--hhcCCCCCCEEECCCCC-CCCch-----hhc
Confidence            45566678888887764  3333  556788888888888 566665  47788888888888874 33331     155


Q ss_pred             CCCccceeecccccccccccccccCCCcCccccEEeEecCCCccccCchhhhccCCCccEEEEecCCccccccccccccc
Q 039808          188 IFPSLENLSIHHLWNLTHICEGSVPNGSFARLRILSVHACPKLKFVFSSFMIHFMSNLEDLTVEDCPAIEEIISEGEIID  267 (358)
Q Consensus       188 ~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~l~~l~~L~~L~i~~c~~l~~i~~~~~~~~  267 (358)
                      .+++|++|+++++. +..+.    ..+.+++|++|++++| .++.+.+   +..+++|+.|+++++ .+..++       
T Consensus       127 ~l~~L~~L~l~~n~-l~~~~----~l~~l~~L~~L~l~~n-~l~~~~~---l~~l~~L~~L~l~~n-~l~~~~-------  189 (308)
T 1h6u_A          127 GLSNLQVLYLDLNQ-ITNIS----PLAGLTNLQYLSIGNA-QVSDLTP---LANLSKLTTLKADDN-KISDIS-------  189 (308)
T ss_dssp             TCTTCCEEECCSSC-CCCCG----GGGGCTTCCEEECCSS-CCCCCGG---GTTCTTCCEEECCSS-CCCCCG-------
T ss_pred             CCCCCCEEECCCCc-cCcCc----cccCCCCccEEEccCC-cCCCChh---hcCCCCCCEEECCCC-ccCcCh-------
Confidence            67888888888764 33321    1456788888888887 4555422   577888888888876 444443       


Q ss_pred             cccccCCCcceeccccccccccccCC-CCCCccEEeeeCCcCCCccCCC
Q 039808          268 SGCTALPRLKKLTLHYLPGLVTIWSS-AWPSLEYVSFYDCPRLKNIGLG  315 (358)
Q Consensus       268 ~~~~~l~~L~~L~l~~c~~L~~~~~~-~~~~L~~L~i~~C~~L~~lP~~  315 (358)
                       ....+++|+.|+++++ .++.++.- .+++|+.|++++++ +...|..
T Consensus       190 -~l~~l~~L~~L~L~~N-~l~~~~~l~~l~~L~~L~l~~N~-i~~~~~~  235 (308)
T 1h6u_A          190 -PLASLPNLIEVHLKNN-QISDVSPLANTSNLFIVTLTNQT-ITNQPVF  235 (308)
T ss_dssp             -GGGGCTTCCEEECTTS-CCCBCGGGTTCTTCCEEEEEEEE-EECCCEE
T ss_pred             -hhcCCCCCCEEEccCC-ccCccccccCCCCCCEEEccCCe-eecCCee
Confidence             2667888888888776 56666544 78889999988875 5665543

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=99.27  E-value=4.5e-11  Score=100.68  Aligned_cols=151  Identities=17%  Similarity=0.210  Sum_probs=105.1

Q ss_pred             hhccCccEEEeccCCCCCccCcccccCccCCcEEEeecCCCceEecCCCCccccCCCccceeecccccccccccccccCC
Q 039808          134 QILACCTAFYLDNHLHINSLSDFGVRSINGLKFCIISECPKIETVVDGKELTTVIFPSLENLSIHHLWNLTHICEGSVPN  213 (358)
Q Consensus       134 ~~l~~L~~L~l~~~~~~~~l~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~  213 (358)
                      ..+++++.|++.++ .+..++  .+..+++|++|++++| .+..+ .    ....+++|++|+++++.-....   +...
T Consensus        41 ~~l~~L~~L~l~~n-~i~~l~--~l~~l~~L~~L~l~~n-~~~~~-~----~l~~l~~L~~L~l~~n~l~~~~---~~~l  108 (197)
T 4ezg_A           41 AQMNSLTYITLANI-NVTDLT--GIEYAHNIKDLTINNI-HATNY-N----PISGLSNLERLRIMGKDVTSDK---IPNL  108 (197)
T ss_dssp             HHHHTCCEEEEESS-CCSCCT--TGGGCTTCSEEEEESC-CCSCC-G----GGTTCTTCCEEEEECTTCBGGG---SCCC
T ss_pred             hhcCCccEEeccCC-CccChH--HHhcCCCCCEEEccCC-CCCcc-h----hhhcCCCCCEEEeECCccCccc---Chhh
Confidence            44677888888877 666666  4778888888888887 33332 1    2456788888888876432222   2234


Q ss_pred             CcCccccEEeEecCCCccccCchhhhccCCCccEEEEecCCccccccccccccccccccCCCcceeccccccccccccCC
Q 039808          214 GSFARLRILSVHACPKLKFVFSSFMIHFMSNLEDLTVEDCPAIEEIISEGEIIDSGCTALPRLKKLTLHYLPGLVTIWSS  293 (358)
Q Consensus       214 ~~~~~L~~L~l~~c~~l~~l~~~~~l~~l~~L~~L~i~~c~~l~~i~~~~~~~~~~~~~l~~L~~L~l~~c~~L~~~~~~  293 (358)
                      +.+++|++|++++|. ++...+ ..++.+++|+.|++++|..+..++        .+..+++|+.|++++| .++.++.-
T Consensus       109 ~~l~~L~~L~Ls~n~-i~~~~~-~~l~~l~~L~~L~L~~n~~i~~~~--------~l~~l~~L~~L~l~~n-~i~~~~~l  177 (197)
T 4ezg_A          109 SGLTSLTLLDISHSA-HDDSIL-TKINTLPKVNSIDLSYNGAITDIM--------PLKTLPELKSLNIQFD-GVHDYRGI  177 (197)
T ss_dssp             TTCTTCCEEECCSSB-CBGGGH-HHHTTCSSCCEEECCSCTBCCCCG--------GGGGCSSCCEEECTTB-CCCCCTTG
T ss_pred             cCCCCCCEEEecCCc-cCcHhH-HHHhhCCCCCEEEccCCCCccccH--------hhcCCCCCCEEECCCC-CCcChHHh
Confidence            567888999888874 443222 346788899999998887666654        4677888999999776 56666533


Q ss_pred             -CCCCccEEeeeCCc
Q 039808          294 -AWPSLEYVSFYDCP  307 (358)
Q Consensus       294 -~~~~L~~L~i~~C~  307 (358)
                       .+++|++|++++++
T Consensus       178 ~~l~~L~~L~l~~N~  192 (197)
T 4ezg_A          178 EDFPKLNQLYAFSQT  192 (197)
T ss_dssp             GGCSSCCEEEECBC-
T ss_pred             ccCCCCCEEEeeCcc
Confidence             78889999888864

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=99.26  E-value=1.8e-10  Score=101.90  Aligned_cols=173  Identities=16%  Similarity=0.147  Sum_probs=131.1

Q ss_pred             ccCccEEEeccCCCCCccCcccccCccCCcEEEeecCCCceEecCCCCccccCCCccceeecccccccccccccccCCCc
Q 039808          136 LACCTAFYLDNHLHINSLSDFGVRSINGLKFCIISECPKIETVVDGKELTTVIFPSLENLSIHHLWNLTHICEGSVPNGS  215 (358)
Q Consensus       136 l~~L~~L~l~~~~~~~~l~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~  215 (358)
                      .++++.|++.++ .+..++...+.++++|++|++++|. +..++...   ...+++|++|.++++. ++.+.  +...+.
T Consensus        36 ~~~l~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n~-l~~i~~~~---~~~l~~L~~L~l~~n~-l~~~~--~~~~~~  107 (270)
T 2o6q_A           36 PADTKKLDLQSN-KLSSLPSKAFHRLTKLRLLYLNDNK-LQTLPAGI---FKELKNLETLWVTDNK-LQALP--IGVFDQ  107 (270)
T ss_dssp             CTTCSEEECCSS-CCSCCCTTSSSSCTTCCEEECCSSC-CSCCCTTT---TSSCTTCCEEECCSSC-CCCCC--TTTTTT
T ss_pred             CCCCCEEECcCC-CCCeeCHHHhcCCCCCCEEECCCCc-cCeeChhh---hcCCCCCCEEECCCCc-CCcCC--HhHccc
Confidence            467999999998 7777776568999999999999874 44443331   3568999999998864 34332  122356


Q ss_pred             CccccEEeEecCCCccccCchhhhccCCCccEEEEecCCccccccccccccccccccCCCcceeccccccccccccCC--
Q 039808          216 FARLRILSVHACPKLKFVFSSFMIHFMSNLEDLTVEDCPAIEEIISEGEIIDSGCTALPRLKKLTLHYLPGLVTIWSS--  293 (358)
Q Consensus       216 ~~~L~~L~l~~c~~l~~l~~~~~l~~l~~L~~L~i~~c~~l~~i~~~~~~~~~~~~~l~~L~~L~l~~c~~L~~~~~~--  293 (358)
                      +++|++|++.++ .++.+++ ..++.+++|+.|+++++ .+..++.      ..+..+++|+.|+++++ .++.++..  
T Consensus       108 l~~L~~L~l~~n-~l~~~~~-~~~~~l~~L~~L~Ls~n-~l~~~~~------~~~~~l~~L~~L~L~~n-~l~~~~~~~~  177 (270)
T 2o6q_A          108 LVNLAELRLDRN-QLKSLPP-RVFDSLTKLTYLSLGYN-ELQSLPK------GVFDKLTSLKELRLYNN-QLKRVPEGAF  177 (270)
T ss_dssp             CSSCCEEECCSS-CCCCCCT-TTTTTCTTCCEEECCSS-CCCCCCT------TTTTTCTTCCEEECCSS-CCSCCCTTTT
T ss_pred             ccCCCEEECCCC-ccCeeCH-HHhCcCcCCCEEECCCC-cCCccCH------hHccCCcccceeEecCC-cCcEeChhHh
Confidence            899999999986 4555543 35678999999999987 4555541      23677899999999877 67777765  


Q ss_pred             -CCCCccEEeeeCCcCCCccCCC-CCCCCCeeEEEe
Q 039808          294 -AWPSLEYVSFYDCPRLKNIGLG-SNLKHSVMEIKA  327 (358)
Q Consensus       294 -~~~~L~~L~i~~C~~L~~lP~~-~~~~~~L~~~~~  327 (358)
                       .+++|++|++++| .++.+|.. +..+++|+.+.-
T Consensus       178 ~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~l  212 (270)
T 2o6q_A          178 DKLTELKTLKLDNN-QLKRVPEGAFDSLEKLKMLQL  212 (270)
T ss_dssp             TTCTTCCEEECCSS-CCSCCCTTTTTTCTTCCEEEC
T ss_pred             ccCCCcCEEECCCC-cCCcCCHHHhccccCCCEEEe
Confidence             7899999999998 68888876 566888988865

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=99.25  E-value=5.4e-11  Score=107.53  Aligned_cols=196  Identities=17%  Similarity=0.192  Sum_probs=120.8

Q ss_pred             hhcCccccEEEeeecCCCcceecccchhhhhhcCCCCCceEEEEccCchhHHHHHhhhccccccccceEEEEEeCccccc
Q 039808           22 ISRLHALKTLSIVVYPGDKRWYKDVKSVVLEVCNLTELSSLCFHFPEIKLLELFLQRCVAWNAQCLTEFRIVVGHDIKNI  101 (358)
Q Consensus        22 i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~~~~~~l~~l~~~~~~~~~~~~~~L~~l~i~~~~~~~~~  101 (358)
                      ...+.+|++|++++ +.+..       . ..+..+++|++|++..+.+..++. +.     .+++               
T Consensus        37 ~~~l~~L~~L~l~~-~~i~~-------l-~~~~~l~~L~~L~L~~n~i~~~~~-~~-----~l~~---------------   86 (308)
T 1h6u_A           37 QADLDGITTLSAFG-TGVTT-------I-EGVQYLNNLIGLELKDNQITDLAP-LK-----NLTK---------------   86 (308)
T ss_dssp             HHHHHTCCEEECTT-SCCCC-------C-TTGGGCTTCCEEECCSSCCCCCGG-GT-----TCCS---------------
T ss_pred             HHHcCCcCEEEeeC-CCccC-------c-hhhhccCCCCEEEccCCcCCCChh-Hc-----cCCC---------------
Confidence            45688889998887 33321       1 247778888888887666655432 12     2333               


Q ss_pred             cccCCcccccccccCCceEEeeCCC--CChHHHHhhccCccEEEeccCCCCCccCcccccCccCCcEEEeecCCCceEec
Q 039808          102 VSRVPDAVAFDYNKQGKCLRFINGE--NIPDAVLQILACCTAFYLDNHLHINSLSDFGVRSINGLKFCIISECPKIETVV  179 (358)
Q Consensus       102 ~~~~~~~~~l~~~~~L~~L~l~~~~--~~~~~~~~~l~~L~~L~l~~~~~~~~l~~~~l~~l~~L~~L~l~~~~~~~~~~  179 (358)
                                     |+.|.+.++.  .++  ....+++|+.|++.++ .+..++  .+..+++|++|++++|. +..++
T Consensus        87 ---------------L~~L~L~~n~l~~~~--~~~~l~~L~~L~l~~n-~l~~~~--~l~~l~~L~~L~l~~n~-l~~~~  145 (308)
T 1h6u_A           87 ---------------ITELELSGNPLKNVS--AIAGLQSIKTLDLTST-QITDVT--PLAGLSNLQVLYLDLNQ-ITNIS  145 (308)
T ss_dssp             ---------------CCEEECCSCCCSCCG--GGTTCTTCCEEECTTS-CCCCCG--GGTTCTTCCEEECCSSC-CCCCG
T ss_pred             ---------------CCEEEccCCcCCCch--hhcCCCCCCEEECCCC-CCCCch--hhcCCCCCCEEECCCCc-cCcCc
Confidence                           3444443332  111  2334677777777777 566555  37778888888887773 33221


Q ss_pred             CCCCccccCCCccceeecccccccccccccccCCCcCccccEEeEecCCCccccCchhhhccCCCccEEEEecCCccccc
Q 039808          180 DGKELTTVIFPSLENLSIHHLWNLTHICEGSVPNGSFARLRILSVHACPKLKFVFSSFMIHFMSNLEDLTVEDCPAIEEI  259 (358)
Q Consensus       180 ~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~l~~l~~L~~L~i~~c~~l~~i  259 (358)
                      .     ...+++|++|+++++. ++.+.    ..+.+++|+.|+++++ .++.+.+   +..+++|+.|++++| .+..+
T Consensus       146 ~-----l~~l~~L~~L~l~~n~-l~~~~----~l~~l~~L~~L~l~~n-~l~~~~~---l~~l~~L~~L~L~~N-~l~~~  210 (308)
T 1h6u_A          146 P-----LAGLTNLQYLSIGNAQ-VSDLT----PLANLSKLTTLKADDN-KISDISP---LASLPNLIEVHLKNN-QISDV  210 (308)
T ss_dssp             G-----GGGCTTCCEEECCSSC-CCCCG----GGTTCTTCCEEECCSS-CCCCCGG---GGGCTTCCEEECTTS-CCCBC
T ss_pred             c-----ccCCCCccEEEccCCc-CCCCh----hhcCCCCCCEEECCCC-ccCcChh---hcCCCCCCEEEccCC-ccCcc
Confidence            1     4567788888887763 33321    1456788888888876 3555422   567888888888886 44444


Q ss_pred             cccccccccccccCCCcceeccccccccccccC
Q 039808          260 ISEGEIIDSGCTALPRLKKLTLHYLPGLVTIWS  292 (358)
Q Consensus       260 ~~~~~~~~~~~~~l~~L~~L~l~~c~~L~~~~~  292 (358)
                      +        ....+++|+.|+++++ .++..+.
T Consensus       211 ~--------~l~~l~~L~~L~l~~N-~i~~~~~  234 (308)
T 1h6u_A          211 S--------PLANTSNLFIVTLTNQ-TITNQPV  234 (308)
T ss_dssp             G--------GGTTCTTCCEEEEEEE-EEECCCE
T ss_pred             c--------cccCCCCCCEEEccCC-eeecCCe
Confidence            3        3667888888888776 3554443

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=99.24  E-value=5.3e-11  Score=105.53  Aligned_cols=188  Identities=16%  Similarity=0.160  Sum_probs=128.2

Q ss_pred             cccccCCceEEeeCCCCChHHHHhhccCccEEEeccCCCCCccCcccccCccCCcEEEeecCCCceEecCCCCccccCCC
Q 039808          111 FDYNKQGKCLRFINGENIPDAVLQILACCTAFYLDNHLHINSLSDFGVRSINGLKFCIISECPKIETVVDGKELTTVIFP  190 (358)
Q Consensus       111 l~~~~~L~~L~l~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~l~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~  190 (358)
                      +..+++|+.|.+.++.-........+++|+.|++.++ .+..++...++++++|++|++++|. +..++..   ....++
T Consensus        59 l~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~---~~~~l~  133 (272)
T 3rfs_A           59 IQYLPNVRYLALGGNKLHDISALKELTNLTYLILTGN-QLQSLPNGVFDKLTNLKELVLVENQ-LQSLPDG---VFDKLT  133 (272)
T ss_dssp             GGGCTTCCEEECTTSCCCCCGGGTTCTTCCEEECTTS-CCCCCCTTTTTTCTTCCEEECTTSC-CCCCCTT---TTTTCT
T ss_pred             cccCCCCcEEECCCCCCCCchhhcCCCCCCEEECCCC-ccCccChhHhcCCcCCCEEECCCCc-CCccCHH---HhccCC
Confidence            4445567777776654111123456788999999888 7777665557889999999999884 3333322   145678


Q ss_pred             ccceeecccccccccccccccCCCcCccccEEeEecCCCccccCchhhhccCCCccEEEEecCCcccccccccccccccc
Q 039808          191 SLENLSIHHLWNLTHICEGSVPNGSFARLRILSVHACPKLKFVFSSFMIHFMSNLEDLTVEDCPAIEEIISEGEIIDSGC  270 (358)
Q Consensus       191 ~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~l~~l~~L~~L~i~~c~~l~~i~~~~~~~~~~~  270 (358)
                      +|++|+++++ .++.+.  +...+.+++|++|++++| +++.+++ ..++.+++|+.|+++++. +..++.      ..+
T Consensus       134 ~L~~L~L~~n-~l~~~~--~~~~~~l~~L~~L~l~~n-~l~~~~~-~~~~~l~~L~~L~L~~N~-l~~~~~------~~~  201 (272)
T 3rfs_A          134 NLTYLNLAHN-QLQSLP--KGVFDKLTNLTELDLSYN-QLQSLPE-GVFDKLTQLKDLRLYQNQ-LKSVPD------GVF  201 (272)
T ss_dssp             TCCEEECCSS-CCCCCC--TTTTTTCTTCCEEECCSS-CCCCCCT-TTTTTCTTCCEEECCSSC-CSCCCT------TTT
T ss_pred             CCCEEECCCC-ccCccC--HHHhccCccCCEEECCCC-CcCccCH-HHhcCCccCCEEECCCCc-CCccCH------HHH
Confidence            9999999887 344432  122356789999999987 4665533 356788999999999874 444431      235


Q ss_pred             ccCCCcceeccccccccccccCCCCCCccEEeeeCCcCCCccCCCCCCCC
Q 039808          271 TALPRLKKLTLHYLPGLVTIWSSAWPSLEYVSFYDCPRLKNIGLGSNLKH  320 (358)
Q Consensus       271 ~~l~~L~~L~l~~c~~L~~~~~~~~~~L~~L~i~~C~~L~~lP~~~~~~~  320 (358)
                      ..+++|+.|++++++-..     .+++|+.++++++..-..+|.....++
T Consensus       202 ~~l~~L~~L~l~~N~~~~-----~~~~l~~l~~~~n~~~g~ip~~~~~~~  246 (272)
T 3rfs_A          202 DRLTSLQYIWLHDNPWDC-----TCPGIRYLSEWINKHSGVVRNSAGSVA  246 (272)
T ss_dssp             TTCTTCCEEECCSSCBCC-----CTTTTHHHHHHHHHTGGGBBCTTSCBC
T ss_pred             hCCcCCCEEEccCCCccc-----cCcHHHHHHHHHHhCCCcccCcccccC
Confidence            778999999998874221     467888888888776667787766544

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=99.24  E-value=2.9e-11  Score=109.47  Aligned_cols=205  Identities=16%  Similarity=0.131  Sum_probs=138.3

Q ss_pred             cccccceEEEEEeCccccccccCCcccccccccCCceEEeeCCC--CChHHHHhh----ccCccEEEeccCCCCCccCcc
Q 039808           83 NAQCLTEFRIVVGHDIKNIVSRVPDAVAFDYNKQGKCLRFINGE--NIPDAVLQI----LACCTAFYLDNHLHINSLSDF  156 (358)
Q Consensus        83 ~~~~L~~l~i~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~--~~~~~~~~~----l~~L~~L~l~~~~~~~~l~~~  156 (358)
                      .+++|+.+.+......    ...|....+..+++|+.|.+.++.  +.+..+...    +++|+.|++.++ .+..++..
T Consensus        93 ~l~~L~~L~L~~n~l~----~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~~~~~~L~~L~L~~N-~l~~~~~~  167 (312)
T 1wwl_A           93 GISGLQELTLENLEVT----GTAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQA-HSLNFSCE  167 (312)
T ss_dssp             TTSCCCEEEEEEEBCB----SCCCCCSSSCCSCCCSEEEEESCBCSSSSSHHHHHHTTCCTTCCEEEEESC-SCCCCCTT
T ss_pred             CcCCccEEEccCCccc----chhHHHHHHhcCCCccEEEccCCCCcchhHHHHHHHHhhcCCCcEEEeeCC-CCccchHH
Confidence            4667777776432221    233331112566789999998874  444333332    289999999999 77777655


Q ss_pred             cccCccCCcEEEeecCCCceEe--cCCCCccccCCCccceeecccccccccccccc-cCCCcCccccEEeEecCCCcccc
Q 039808          157 GVRSINGLKFCIISECPKIETV--VDGKELTTVIFPSLENLSIHHLWNLTHICEGS-VPNGSFARLRILSVHACPKLKFV  233 (358)
Q Consensus       157 ~l~~l~~L~~L~l~~~~~~~~~--~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~-~~~~~~~~L~~L~l~~c~~l~~l  233 (358)
                      .++++++|++|++++|.....+  +..  .....+++|++|+++++. ++.+...+ .....+++|++|+++++. ++..
T Consensus       168 ~~~~l~~L~~L~Ls~N~l~~~~~~~~~--~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~~~~l~~L~~L~Ls~N~-l~~~  243 (312)
T 1wwl_A          168 QVRVFPALSTLDLSDNPELGERGLISA--LCPLKFPTLQVLALRNAG-METPSGVCSALAAARVQLQGLDLSHNS-LRDA  243 (312)
T ss_dssp             TCCCCSSCCEEECCSCTTCHHHHHHHH--SCTTSCTTCCEEECTTSC-CCCHHHHHHHHHHTTCCCSEEECTTSC-CCSS
T ss_pred             HhccCCCCCEEECCCCCcCcchHHHHH--HHhccCCCCCEEECCCCc-CcchHHHHHHHHhcCCCCCEEECCCCc-CCcc
Confidence            6899999999999998644321  111  012568999999999874 33221111 111356899999999874 5554


Q ss_pred             CchhhhccCCCccEEEEecCCccccccccccccccccccCCCcceeccccccccccccCC-CCCCccEEeeeCCc
Q 039808          234 FSSFMIHFMSNLEDLTVEDCPAIEEIISEGEIIDSGCTALPRLKKLTLHYLPGLVTIWSS-AWPSLEYVSFYDCP  307 (358)
Q Consensus       234 ~~~~~l~~l~~L~~L~i~~c~~l~~i~~~~~~~~~~~~~l~~L~~L~l~~c~~L~~~~~~-~~~~L~~L~i~~C~  307 (358)
                      .+...+..+++|+.|+++++ .+..++         ...+++|+.|+++++ .++.+|.- .+++|++|++++++
T Consensus       244 ~~~~~~~~l~~L~~L~Ls~N-~l~~ip---------~~~~~~L~~L~Ls~N-~l~~~p~~~~l~~L~~L~L~~N~  307 (312)
T 1wwl_A          244 AGAPSCDWPSQLNSLNLSFT-GLKQVP---------KGLPAKLSVLDLSYN-RLDRNPSPDELPQVGNLSLKGNP  307 (312)
T ss_dssp             CCCSCCCCCTTCCEEECTTS-CCSSCC---------SSCCSEEEEEECCSS-CCCSCCCTTTSCEEEEEECTTCT
T ss_pred             cchhhhhhcCCCCEEECCCC-ccChhh---------hhccCCceEEECCCC-CCCCChhHhhCCCCCEEeccCCC
Confidence            43334566899999999997 455665         122289999999876 78877655 89999999999975

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=99.22  E-value=5.2e-13  Score=127.37  Aligned_cols=157  Identities=14%  Similarity=0.059  Sum_probs=75.6

Q ss_pred             ccceeccCCCCccC----CchhhcCc----cccEEEeeecCCCcceeccc-chhhhhhcCCCCCceEEEEccCchhHH-H
Q 039808            5 CNVEYVKMPPQLIS----SGIISRLH----ALKTLSIVVYPGDKRWYKDV-KSVVLEVCNLTELSSLCFHFPEIKLLE-L   74 (358)
Q Consensus         5 ~~L~~l~L~~~~ip----~~~i~~L~----~L~~L~l~~~~~~~~~~~~~-~~~~~~l~~l~~L~~L~~~~~~l~~l~-~   74 (358)
                      .+|++|+++...+.    ..+...+.    +|++|++++ +.+.   ..+ ...+..+.++++|++|++..+.+.... .
T Consensus        56 ~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~L~~-n~i~---~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~  131 (461)
T 1z7x_W           56 PALAELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQN-CCLT---GAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQ  131 (461)
T ss_dssp             TTCCEEECTTCCCHHHHHHHHHHTTCSTTCCCCEEECTT-SCCB---GGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHH
T ss_pred             CCcCEEeCCCCcCChHHHHHHHHHHhhCCCceeEEEccC-CCCC---HHHHHHHHHHHccCCceeEEECCCCcCchHHHH
Confidence            45666666653321    12222344    466666665 2221   110 133556778888888888766654321 1


Q ss_pred             HHhhhccccccccceEEEEEeCccccccccCC--c-ccccccccCCceEEeeCCCCChH----HHHh----hccCccEEE
Q 039808           75 FLQRCVAWNAQCLTEFRIVVGHDIKNIVSRVP--D-AVAFDYNKQGKCLRFINGENIPD----AVLQ----ILACCTAFY  143 (358)
Q Consensus        75 ~~~~~~~~~~~~L~~l~i~~~~~~~~~~~~~~--~-~~~l~~~~~L~~L~l~~~~~~~~----~~~~----~l~~L~~L~  143 (358)
                      .+.........+|+++.+.   .+ . +....  . ...+..+++|+.|.+.++. +..    .+..    ..++|+.|+
T Consensus       132 ~l~~~l~~~~~~L~~L~L~---~n-~-l~~~~~~~l~~~l~~~~~L~~L~L~~n~-i~~~~~~~l~~~l~~~~~~L~~L~  205 (461)
T 1z7x_W          132 LLCEGLLDPQCRLEKLQLE---YC-S-LSAASCEPLASVLRAKPDFKELTVSNND-INEAGVRVLCQGLKDSPCQLEALK  205 (461)
T ss_dssp             HHHHHHTSTTCCCCEEECT---TS-C-CBGGGHHHHHHHHHHCTTCCEEECCSSB-CHHHHHHHHHHHHHHSCCCCCEEE
T ss_pred             HHHHHHhcCCCcceEEECC---CC-C-CCHHHHHHHHHHHhhCCCCCEEECcCCC-cchHHHHHHHHHHhcCCCCceEEE
Confidence            1111000013356666651   11 0 01000  0 0133344577788777664 222    1111    134788888


Q ss_pred             eccCCCCCc-----cCcccccCccCCcEEEeecCC
Q 039808          144 LDNHLHINS-----LSDFGVRSINGLKFCIISECP  173 (358)
Q Consensus       144 l~~~~~~~~-----l~~~~l~~l~~L~~L~l~~~~  173 (358)
                      +.+| .+..     ++. .+..+++|++|++++|.
T Consensus       206 L~~n-~l~~~~~~~l~~-~l~~~~~L~~L~Ls~n~  238 (461)
T 1z7x_W          206 LESC-GVTSDNCRDLCG-IVASKASLRELALGSNK  238 (461)
T ss_dssp             CTTS-CCBTTHHHHHHH-HHHHCTTCCEEECCSSB
T ss_pred             ccCC-CCcHHHHHHHHH-HHHhCCCccEEeccCCc
Confidence            8777 4443     222 35567777788777763

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=99.21  E-value=3.9e-12  Score=125.12  Aligned_cols=190  Identities=10%  Similarity=-0.006  Sum_probs=90.3

Q ss_pred             cccCCceEEeeCCC-CChHH----HHhhccCccEEEeccCCCCCccCcccccCccCCcEEEeecC---------------
Q 039808          113 YNKQGKCLRFINGE-NIPDA----VLQILACCTAFYLDNHLHINSLSDFGVRSINGLKFCIISEC---------------  172 (358)
Q Consensus       113 ~~~~L~~L~l~~~~-~~~~~----~~~~l~~L~~L~l~~~~~~~~l~~~~l~~l~~L~~L~l~~~---------------  172 (358)
                      .+++|+.|.+.++. .+...    +...+++|+.|++.+|..+..++. .+..+++|++|.+..+               
T Consensus       182 ~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~l~~-~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~  260 (594)
T 2p1m_B          182 TYTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAVPLEKLAT-LLQRAPQLEELGTGGYTAEVRPDVYSGLSVA  260 (594)
T ss_dssp             TCCCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTTSCHHHHHH-HHHHCTTCSEEECSBCCCCCCHHHHHHHHHH
T ss_pred             cCCcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCCCcHHHHHH-HHhcCCcceEcccccccCccchhhHHHHHHH
Confidence            34467777776654 23222    123357777777777644444333 2556666666664333               


Q ss_pred             ----CCceEecCCC---Cccc----cCCCccceeecccccccccccccccCCCcCccccEEeEecCCCccccCchhhhcc
Q 039808          173 ----PKIETVVDGK---ELTT----VIFPSLENLSIHHLWNLTHICEGSVPNGSFARLRILSVHACPKLKFVFSSFMIHF  241 (358)
Q Consensus       173 ----~~~~~~~~~~---~~~~----~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~l~~  241 (358)
                          ++++.+.+..   ....    ..+++|++|++++|. +..... ......+++|++|++.+|  +.......+...
T Consensus       261 l~~~~~L~~Ls~~~~~~~~~l~~~~~~~~~L~~L~L~~~~-l~~~~l-~~~~~~~~~L~~L~l~~~--~~~~~l~~l~~~  336 (594)
T 2p1m_B          261 LSGCKELRCLSGFWDAVPAYLPAVYSVCSRLTTLNLSYAT-VQSYDL-VKLLCQCPKLQRLWVLDY--IEDAGLEVLAST  336 (594)
T ss_dssp             HHTCTTCCEEECCBTCCGGGGGGGHHHHTTCCEEECTTCC-CCHHHH-HHHHTTCTTCCEEEEEGG--GHHHHHHHHHHH
T ss_pred             HhcCCCcccccCCcccchhhHHHHHHhhCCCCEEEccCCC-CCHHHH-HHHHhcCCCcCEEeCcCc--cCHHHHHHHHHh
Confidence                2233221000   0001    134677777777665 332100 000234577777777776  222211223345


Q ss_pred             CCCccEEEEecC--------CccccccccccccccccccCCCcceeccccccccccccCC----CCCCccEEeee-----
Q 039808          242 MSNLEDLTVEDC--------PAIEEIISEGEIIDSGCTALPRLKKLTLHYLPGLVTIWSS----AWPSLEYVSFY-----  304 (358)
Q Consensus       242 l~~L~~L~i~~c--------~~l~~i~~~~~~~~~~~~~l~~L~~L~l~~c~~L~~~~~~----~~~~L~~L~i~-----  304 (358)
                      +++|++|++.+|        ..+....     ...-...+++|+.|.+ +|+.++.....    .+++|+.|++.     
T Consensus       337 ~~~L~~L~L~~~~~~g~~~~~~l~~~~-----l~~l~~~~~~L~~L~~-~~~~l~~~~~~~l~~~~~~L~~L~L~~~~~~  410 (594)
T 2p1m_B          337 CKDLRELRVFPSEPFVMEPNVALTEQG-----LVSVSMGCPKLESVLY-FCRQMTNAALITIARNRPNMTRFRLCIIEPK  410 (594)
T ss_dssp             CTTCCEEEEECSCTTCSSCSSCCCHHH-----HHHHHHHCTTCCEEEE-EESCCCHHHHHHHHHHCTTCCEEEEEESSTT
T ss_pred             CCCCCEEEEecCcccccccCCCCCHHH-----HHHHHHhchhHHHHHH-hcCCcCHHHHHHHHhhCCCcceeEeecccCC
Confidence            677777777443        2221100     0000123566666633 44455433222    36677777776     


Q ss_pred             CCcCCCccC
Q 039808          305 DCPRLKNIG  313 (358)
Q Consensus       305 ~C~~L~~lP  313 (358)
                      +|..++..|
T Consensus       411 ~~~~l~~~~  419 (594)
T 2p1m_B          411 APDYLTLEP  419 (594)
T ss_dssp             CCCTTTCCC
T ss_pred             CcccccCCc
Confidence            555565444

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=99.19  E-value=5.3e-11  Score=105.65  Aligned_cols=175  Identities=17%  Similarity=0.179  Sum_probs=115.9

Q ss_pred             cCCceEEeeCCC--CChHHHHhhccCccEEEeccCCCCCccCcccccCccCCcEEEeecCCCceEecCCCCccccCCCcc
Q 039808          115 KQGKCLRFINGE--NIPDAVLQILACCTAFYLDNHLHINSLSDFGVRSINGLKFCIISECPKIETVVDGKELTTVIFPSL  192 (358)
Q Consensus       115 ~~L~~L~l~~~~--~~~~~~~~~l~~L~~L~l~~~~~~~~l~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L  192 (358)
                      .+|+.|.+.++.  .++......+++|+.|++.++ .+..++...+.++++|++|++++|. +..+...   ....+++|
T Consensus        52 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~---~~~~l~~L  126 (276)
T 2z62_A           52 PELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGN-PIQSLALGAFSGLSSLQKLVAVETN-LASLENF---PIGHLKTL  126 (276)
T ss_dssp             TTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTC-CCCEECTTTTTTCTTCCEEECTTSC-CCCSTTC---CCTTCTTC
T ss_pred             cCCcEEECCCCcCCccCHHHccCCcCCCEEECCCC-ccCccChhhhcCCccccEEECCCCC-ccccCch---hcccCCCC
Confidence            356666665543  233334455788888988888 6666665468889999999998874 3333222   15667899


Q ss_pred             ceeecccccccccccccccCCCcCccccEEeEecCCCccccCchhhhccCCCcc----EEEEecCCcccccccccccccc
Q 039808          193 ENLSIHHLWNLTHICEGSVPNGSFARLRILSVHACPKLKFVFSSFMIHFMSNLE----DLTVEDCPAIEEIISEGEIIDS  268 (358)
Q Consensus       193 ~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~l~~l~~L~----~L~i~~c~~l~~i~~~~~~~~~  268 (358)
                      ++|+++++.- +.+. .+...+.+++|++|+++++. ++.+++. .+..+++|+    .|+++++ .+..++       .
T Consensus       127 ~~L~l~~n~l-~~~~-l~~~~~~l~~L~~L~Ls~N~-l~~~~~~-~~~~l~~L~~l~l~L~ls~n-~l~~~~-------~  194 (276)
T 2z62_A          127 KELNVAHNLI-QSFK-LPEYFSNLTNLEHLDLSSNK-IQSIYCT-DLRVLHQMPLLNLSLDLSLN-PMNFIQ-------P  194 (276)
T ss_dssp             CEEECCSSCC-CCCC-CCGGGGGCTTCCEEECCSSC-CCEECGG-GGHHHHTCTTCCEEEECCSS-CCCEEC-------T
T ss_pred             CEEECcCCcc-ceec-CchhhccCCCCCEEECCCCC-CCcCCHH-HhhhhhhccccceeeecCCC-cccccC-------c
Confidence            9999987643 2211 12234567899999999874 5555332 334455555    7888875 444444       2


Q ss_pred             ccccCCCcceeccccccccccccCC---CCCCccEEeeeCCc
Q 039808          269 GCTALPRLKKLTLHYLPGLVTIWSS---AWPSLEYVSFYDCP  307 (358)
Q Consensus       269 ~~~~l~~L~~L~l~~c~~L~~~~~~---~~~~L~~L~i~~C~  307 (358)
                      .....++|+.|+++++ .++.++..   .+++|++|++++++
T Consensus       195 ~~~~~~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~l~~N~  235 (276)
T 2z62_A          195 GAFKEIRLKELALDTN-QLKSVPDGIFDRLTSLQKIWLHTNP  235 (276)
T ss_dssp             TSSCSCCEEEEECCSS-CCSCCCTTTTTTCCSCCEEECCSSC
T ss_pred             cccCCCcccEEECCCC-ceeecCHhHhcccccccEEEccCCc
Confidence            3344558999999877 58888776   68999999999764

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=99.19  E-value=1.2e-12  Score=124.72  Aligned_cols=159  Identities=10%  Similarity=0.032  Sum_probs=91.0

Q ss_pred             cccceeccCCCCccC----CchhhcCccccEEEeeecCCCcceecccchhhhhhcCCCCCceEEEEccCchhHH-HHHhh
Q 039808            4 SCNVEYVKMPPQLIS----SGIISRLHALKTLSIVVYPGDKRWYKDVKSVVLEVCNLTELSSLCFHFPEIKLLE-LFLQR   78 (358)
Q Consensus         4 l~~L~~l~L~~~~ip----~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~~~~~~l~~l~-~~~~~   78 (358)
                      +.+|++|+|+...+.    ..++..+++|++|+++++ .+..-  ....++..+..+++|++|++..+.+.... ..+..
T Consensus         2 ~~~l~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~-~l~~~--~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~   78 (461)
T 1z7x_W            2 SLDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDC-GLTEA--RCKDISSALRVNPALAELNLRSNELGDVGVHCVLQ   78 (461)
T ss_dssp             CEEEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESS-CCCHH--HHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHH
T ss_pred             CccceehhhhhcccCchhHHHHHhhcCCccEEEccCC-CCCHH--HHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHH
Confidence            567889999874443    223678999999999983 23210  00134566888999999999777765421 11111


Q ss_pred             hcccccc----ccceEEEEEeCccccccccCCcccccccccCCceEEeeCCCCChH----HHHhh----ccCccEEEecc
Q 039808           79 CVAWNAQ----CLTEFRIVVGHDIKNIVSRVPDAVAFDYNKQGKCLRFINGENIPD----AVLQI----LACCTAFYLDN  146 (358)
Q Consensus        79 ~~~~~~~----~L~~l~i~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~----~~~~~----l~~L~~L~l~~  146 (358)
                          .+.    +|+.+.+........-+..++  ..+..+++|+.|.+.++. +..    .+...    .++|+.|++.+
T Consensus        79 ----~l~~~~~~L~~L~L~~n~i~~~~~~~l~--~~l~~~~~L~~L~Ls~n~-i~~~~~~~l~~~l~~~~~~L~~L~L~~  151 (461)
T 1z7x_W           79 ----GLQTPSCKIQKLSLQNCCLTGAGCGVLS--STLRTLPTLQELHLSDNL-LGDAGLQLLCEGLLDPQCRLEKLQLEY  151 (461)
T ss_dssp             ----TTCSTTCCCCEEECTTSCCBGGGHHHHH--HHTTSCTTCCEEECCSSB-CHHHHHHHHHHHHTSTTCCCCEEECTT
T ss_pred             ----HHhhCCCceeEEEccCCCCCHHHHHHHH--HHHccCCceeEEECCCCc-CchHHHHHHHHHHhcCCCcceEEECCC
Confidence                223    577777511000000000111  245566688888887765 222    22222    34688888888


Q ss_pred             CCCCCccCc----ccccCccCCcEEEeecCC
Q 039808          147 HLHINSLSD----FGVRSINGLKFCIISECP  173 (358)
Q Consensus       147 ~~~~~~l~~----~~l~~l~~L~~L~l~~~~  173 (358)
                      | .+.....    ..+..+++|++|++++|.
T Consensus       152 n-~l~~~~~~~l~~~l~~~~~L~~L~L~~n~  181 (461)
T 1z7x_W          152 C-SLSAASCEPLASVLRAKPDFKELTVSNND  181 (461)
T ss_dssp             S-CCBGGGHHHHHHHHHHCTTCCEEECCSSB
T ss_pred             C-CCCHHHHHHHHHHHhhCCCCCEEECcCCC
Confidence            7 5543211    135567888888888775

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=99.18  E-value=4.2e-12  Score=124.89  Aligned_cols=60  Identities=13%  Similarity=0.078  Sum_probs=36.7

Q ss_pred             CCCccEEEEecCCccccccccccccccccccCCCcceeccccccccccccCC----CCCCccEEeeeCCcC
Q 039808          242 MSNLEDLTVEDCPAIEEIISEGEIIDSGCTALPRLKKLTLHYLPGLVTIWSS----AWPSLEYVSFYDCPR  308 (358)
Q Consensus       242 l~~L~~L~i~~c~~l~~i~~~~~~~~~~~~~l~~L~~L~l~~c~~L~~~~~~----~~~~L~~L~i~~C~~  308 (358)
                      +++|+.|++++|. +....     ...-...+++|+.|++++|+. +.....    .+++|++|++++|+.
T Consensus       455 ~~~L~~L~L~~~~-i~~~~-----~~~l~~~~~~L~~L~L~~n~~-~~~~~~~~~~~l~~L~~L~l~~~~~  518 (594)
T 2p1m_B          455 AKKMEMLSVAFAG-DSDLG-----MHHVLSGCDSLRKLEIRDCPF-GDKALLANASKLETMRSLWMSSCSV  518 (594)
T ss_dssp             CTTCCEEEEESCC-SSHHH-----HHHHHHHCTTCCEEEEESCSC-CHHHHHHTGGGGGGSSEEEEESSCC
T ss_pred             chhccEeeccCCC-CcHHH-----HHHHHhcCCCcCEEECcCCCC-cHHHHHHHHHhCCCCCEEeeeCCCC
Confidence            5666666666654 21100     000124588999999988864 332221    578999999999975

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=99.17  E-value=4.1e-12  Score=115.98  Aligned_cols=182  Identities=13%  Similarity=0.096  Sum_probs=128.5

Q ss_pred             ccccCCceEEeeCCCCC---hHHHHhhccCccEEEeccCCCCCccCcccccCccCCcEEEeecCCCceE--ecCCCCccc
Q 039808          112 DYNKQGKCLRFINGENI---PDAVLQILACCTAFYLDNHLHINSLSDFGVRSINGLKFCIISECPKIET--VVDGKELTT  186 (358)
Q Consensus       112 ~~~~~L~~L~l~~~~~~---~~~~~~~l~~L~~L~l~~~~~~~~l~~~~l~~l~~L~~L~l~~~~~~~~--~~~~~~~~~  186 (358)
                      ..+.+|+.|.+.++.-.   .......+++|+.|++.++ .+.......++.+++|++|++++|..+..  ++..    .
T Consensus        90 ~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~-~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~----~  164 (336)
T 2ast_B           90 FSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGL-RLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTL----L  164 (336)
T ss_dssp             CCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTC-BCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHH----H
T ss_pred             ccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCc-ccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHH----H
Confidence            34568999999887521   2234566899999999998 55432222578899999999999965542  2111    4


Q ss_pred             cCCCccceeecccccccccccccccCCCcCc-cccEEeEecCC-CccccCchhhhccCCCccEEEEecCCcccc-ccccc
Q 039808          187 VIFPSLENLSIHHLWNLTHICEGSVPNGSFA-RLRILSVHACP-KLKFVFSSFMIHFMSNLEDLTVEDCPAIEE-IISEG  263 (358)
Q Consensus       187 ~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~-~L~~L~l~~c~-~l~~l~~~~~l~~l~~L~~L~i~~c~~l~~-i~~~~  263 (358)
                      ..+++|++|++++|..++.... +...+.++ +|++|++++|. .++....+..+..+++|+.|++++|..+.. .+   
T Consensus       165 ~~~~~L~~L~l~~~~~l~~~~~-~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~---  240 (336)
T 2ast_B          165 SSCSRLDELNLSWCFDFTEKHV-QVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCF---  240 (336)
T ss_dssp             HHCTTCCEEECCCCTTCCHHHH-HHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGG---
T ss_pred             hcCCCCCEEcCCCCCCcChHHH-HHHHHhcccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHH---
Confidence            5689999999999865554210 11134678 99999999986 454221234567899999999999975543 22   


Q ss_pred             cccccccccCCCcceeccccccccccccCC---CCCCccEEeeeCC
Q 039808          264 EIIDSGCTALPRLKKLTLHYLPGLVTIWSS---AWPSLEYVSFYDC  306 (358)
Q Consensus       264 ~~~~~~~~~l~~L~~L~l~~c~~L~~~~~~---~~~~L~~L~i~~C  306 (358)
                          ..+..+++|+.|++++|..+......   .+++|++|++++|
T Consensus       241 ----~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~  282 (336)
T 2ast_B          241 ----QEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI  282 (336)
T ss_dssp             ----GGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS
T ss_pred             ----HHHhCCCCCCEeeCCCCCCCCHHHHHHHhcCCCCCEEeccCc
Confidence                24677899999999999755433222   7999999999999

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=99.16  E-value=9.2e-11  Score=106.01  Aligned_cols=49  Identities=18%  Similarity=0.203  Sum_probs=25.3

Q ss_pred             CCcceeccccccccccccCCCCCCccEEeeeCCcCCCccCCCCCCCCCeeEE
Q 039808          274 PRLKKLTLHYLPGLVTIWSSAWPSLEYVSFYDCPRLKNIGLGSNLKHSVMEI  325 (358)
Q Consensus       274 ~~L~~L~l~~c~~L~~~~~~~~~~L~~L~i~~C~~L~~lP~~~~~~~~L~~~  325 (358)
                      ++|+.|+++++ .++.+|...+++|++|++++| +++.+|. ...+++|+.+
T Consensus       251 ~~L~~L~Ls~N-~l~~lp~~~~~~L~~L~Ls~N-~l~~~~~-~~~l~~L~~L  299 (310)
T 4glp_A          251 SALNSLNLSFA-GLEQVPKGLPAKLRVLDLSSN-RLNRAPQ-PDELPEVDNL  299 (310)
T ss_dssp             TTCCCEECCSS-CCCSCCSCCCSCCSCEECCSC-CCCSCCC-TTSCCCCSCE
T ss_pred             CcCCEEECCCC-CCCchhhhhcCCCCEEECCCC-cCCCCch-hhhCCCccEE
Confidence            46666666444 455554443356666666655 3555544 3344455544

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=99.13  E-value=2.2e-10  Score=103.51  Aligned_cols=202  Identities=14%  Similarity=0.107  Sum_probs=134.8

Q ss_pred             cccccceEEEEEeCccccccccCCccccc--ccccCCceEEeeCCCCC---h---HHHHhhccCccEEEeccCCCCCccC
Q 039808           83 NAQCLTEFRIVVGHDIKNIVSRVPDAVAF--DYNKQGKCLRFINGENI---P---DAVLQILACCTAFYLDNHLHINSLS  154 (358)
Q Consensus        83 ~~~~L~~l~i~~~~~~~~~~~~~~~~~~l--~~~~~L~~L~l~~~~~~---~---~~~~~~l~~L~~L~l~~~~~~~~l~  154 (358)
                      ...+|+++.+......    ...|.  .+  ..+.+|+.|.+.++.-.   +   ......+++|+.|++.++ .+..++
T Consensus        89 ~~~~L~~L~l~~n~l~----~~~~~--~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n-~l~~~~  161 (310)
T 4glp_A           89 AYSRLKELTLEDLKIT----GTMPP--LPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQA-HSPAFS  161 (310)
T ss_dssp             HHSCCCEEEEESCCCB----SCCCC--CSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECC-SSCCCC
T ss_pred             ccCceeEEEeeCCEec----cchhh--hhhhccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCC-Ccchhh
Confidence            3456888877311111    22222  22  55668999999887511   1   111235889999999999 677766


Q ss_pred             cccccCccCCcEEEeecCCCceE--ecCCCCccccCCCccceeecccccccccccccccC-CCcCccccEEeEecCCCcc
Q 039808          155 DFGVRSINGLKFCIISECPKIET--VVDGKELTTVIFPSLENLSIHHLWNLTHICEGSVP-NGSFARLRILSVHACPKLK  231 (358)
Q Consensus       155 ~~~l~~l~~L~~L~l~~~~~~~~--~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~-~~~~~~L~~L~l~~c~~l~  231 (358)
                      ...++.+++|++|++++|.....  ++...  ....+++|++|.++++. ++.+...... .+.+++|++|+++++. +.
T Consensus       162 ~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~--~~~~l~~L~~L~Ls~N~-l~~l~~~~~~l~~~l~~L~~L~Ls~N~-l~  237 (310)
T 4glp_A          162 CEQVRAFPALTSLDLSDNPGLGERGLMAAL--CPHKFPAIQNLALRNTG-METPTGVCAALAAAGVQPHSLDLSHNS-LR  237 (310)
T ss_dssp             TTSCCCCTTCCEEECCSCTTCHHHHHHTTS--CTTSSCCCCSCBCCSSC-CCCHHHHHHHHHHHTCCCSSEECTTSC-CC
T ss_pred             HHHhccCCCCCEEECCCCCCccchhhhHHH--hhhcCCCCCEEECCCCC-CCchHHHHHHHHhcCCCCCEEECCCCC-CC
Confidence            55688999999999999864432  11111  13568899999999874 3332211111 2456899999999875 55


Q ss_pred             ccCchhhhcc---CCCccEEEEecCCccccccccccccccccccCCCcceeccccccccccccCC-CCCCccEEeeeCCc
Q 039808          232 FVFSSFMIHF---MSNLEDLTVEDCPAIEEIISEGEIIDSGCTALPRLKKLTLHYLPGLVTIWSS-AWPSLEYVSFYDCP  307 (358)
Q Consensus       232 ~l~~~~~l~~---l~~L~~L~i~~c~~l~~i~~~~~~~~~~~~~l~~L~~L~l~~c~~L~~~~~~-~~~~L~~L~i~~C~  307 (358)
                      ...|.. +..   +++|+.|+++++ .+..++         ...+++|+.|+++++ .++.++.. .+++|+.|++++++
T Consensus       238 ~~~p~~-~~~~~~~~~L~~L~Ls~N-~l~~lp---------~~~~~~L~~L~Ls~N-~l~~~~~~~~l~~L~~L~L~~N~  305 (310)
T 4glp_A          238 ATVNPS-APRCMWSSALNSLNLSFA-GLEQVP---------KGLPAKLRVLDLSSN-RLNRAPQPDELPEVDNLTLDGNP  305 (310)
T ss_dssp             CCCCSC-CSSCCCCTTCCCEECCSS-CCCSCC---------SCCCSCCSCEECCSC-CCCSCCCTTSCCCCSCEECSSTT
T ss_pred             ccchhh-HHhccCcCcCCEEECCCC-CCCchh---------hhhcCCCCEEECCCC-cCCCCchhhhCCCccEEECcCCC
Confidence            543322 233   379999999987 555665         233589999999876 68877655 89999999999975

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=99.13  E-value=6.5e-10  Score=97.21  Aligned_cols=153  Identities=17%  Similarity=0.193  Sum_probs=100.0

Q ss_pred             cCccEEEeccCCCCCccCcccccCccCCcEEEeecCCCceEecCCCCccccCCCccceeecccccccccccccccCCCcC
Q 039808          137 ACCTAFYLDNHLHINSLSDFGVRSINGLKFCIISECPKIETVVDGKELTTVIFPSLENLSIHHLWNLTHICEGSVPNGSF  216 (358)
Q Consensus       137 ~~L~~L~l~~~~~~~~l~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~  216 (358)
                      +.++.|++.++ .+..+....+.++++|++|++++|. +..++..   ....+++|++|++++.. ++.+.  +..++.+
T Consensus        35 ~~l~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~---~~~~l~~L~~L~L~~n~-l~~~~--~~~~~~l  106 (251)
T 3m19_A           35 ADTEKLDLQST-GLATLSDATFRGLTKLTWLNLDYNQ-LQTLSAG---VFDDLTELGTLGLANNQ-LASLP--LGVFDHL  106 (251)
T ss_dssp             TTCCEEECTTS-CCCCCCTTTTTTCTTCCEEECTTSC-CCCCCTT---TTTTCTTCCEEECTTSC-CCCCC--TTTTTTC
T ss_pred             CCCCEEEccCC-CcCccCHhHhcCcccCCEEECCCCc-CCccCHh---HhccCCcCCEEECCCCc-ccccC--hhHhccc
Confidence            46777777777 5666555457778888888887763 3333222   14556778888887753 33321  1223467


Q ss_pred             ccccEEeEecCCCccccCchhhhccCCCccEEEEecCCccccccccccccccccccCCCcceeccccccccccccCC---
Q 039808          217 ARLRILSVHACPKLKFVFSSFMIHFMSNLEDLTVEDCPAIEEIISEGEIIDSGCTALPRLKKLTLHYLPGLVTIWSS---  293 (358)
Q Consensus       217 ~~L~~L~l~~c~~l~~l~~~~~l~~l~~L~~L~i~~c~~l~~i~~~~~~~~~~~~~l~~L~~L~l~~c~~L~~~~~~---  293 (358)
                      ++|++|+++++ +++.+++ ..+..+++|+.|+++++ .+..++.      ..+..+++|+.|+++++ .++.++..   
T Consensus       107 ~~L~~L~L~~N-~l~~~~~-~~~~~l~~L~~L~Ls~N-~l~~~~~------~~~~~l~~L~~L~L~~N-~l~~~~~~~~~  176 (251)
T 3m19_A          107 TQLDKLYLGGN-QLKSLPS-GVFDRLTKLKELRLNTN-QLQSIPA------GAFDKLTNLQTLSLSTN-QLQSVPHGAFD  176 (251)
T ss_dssp             TTCCEEECCSS-CCCCCCT-TTTTTCTTCCEEECCSS-CCCCCCT------TTTTTCTTCCEEECCSS-CCSCCCTTTTT
T ss_pred             CCCCEEEcCCC-cCCCcCh-hHhccCCcccEEECcCC-cCCccCH------HHcCcCcCCCEEECCCC-cCCccCHHHHh
Confidence            78888888876 4555533 34567888888888876 5555541      23567788888888766 67777654   


Q ss_pred             CCCCccEEeeeCCc
Q 039808          294 AWPSLEYVSFYDCP  307 (358)
Q Consensus       294 ~~~~L~~L~i~~C~  307 (358)
                      .+++|+.|++++++
T Consensus       177 ~l~~L~~L~l~~N~  190 (251)
T 3m19_A          177 RLGKLQTITLFGNQ  190 (251)
T ss_dssp             TCTTCCEEECCSCC
T ss_pred             CCCCCCEEEeeCCc
Confidence            67888888888875

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=99.11  E-value=5.4e-10  Score=100.08  Aligned_cols=173  Identities=16%  Similarity=0.242  Sum_probs=120.6

Q ss_pred             ccccccCCceEEeeCCC--CChHHHHhhccCccEEEeccCCCCCccCcccccCccCCcEEEeecCCCceEecCCCCcccc
Q 039808          110 AFDYNKQGKCLRFINGE--NIPDAVLQILACCTAFYLDNHLHINSLSDFGVRSINGLKFCIISECPKIETVVDGKELTTV  187 (358)
Q Consensus       110 ~l~~~~~L~~L~l~~~~--~~~~~~~~~l~~L~~L~l~~~~~~~~l~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~  187 (358)
                      ....+.+++.|.+.++.  .++  ....+++|+.|++.++ .+..++.  +.++++|++|++++|. +..++     ...
T Consensus        41 ~~~~l~~L~~L~l~~~~i~~~~--~~~~l~~L~~L~L~~n-~l~~~~~--l~~l~~L~~L~l~~n~-l~~~~-----~l~  109 (291)
T 1h6t_A           41 TQNELNSIDQIIANNSDIKSVQ--GIQYLPNVTKLFLNGN-KLTDIKP--LANLKNLGWLFLDENK-VKDLS-----SLK  109 (291)
T ss_dssp             CHHHHHTCCEEECTTSCCCCCT--TGGGCTTCCEEECCSS-CCCCCGG--GTTCTTCCEEECCSSC-CCCGG-----GGT
T ss_pred             chhhcCcccEEEccCCCcccCh--hHhcCCCCCEEEccCC-ccCCCcc--cccCCCCCEEECCCCc-CCCCh-----hhc
Confidence            34455577888876654  232  2455788888988888 6666664  7888899999998874 33331     155


Q ss_pred             CCCccceeecccccccccccccccCCCcCccccEEeEecCCCccccCchhhhccCCCccEEEEecCCccccccccccccc
Q 039808          188 IFPSLENLSIHHLWNLTHICEGSVPNGSFARLRILSVHACPKLKFVFSSFMIHFMSNLEDLTVEDCPAIEEIISEGEIID  267 (358)
Q Consensus       188 ~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~l~~l~~L~~L~i~~c~~l~~i~~~~~~~~  267 (358)
                      .+++|++|+++++. ++.+    ...+.+++|++|++++| +++.+   ..++.+++|+.|++++| .+..++       
T Consensus       110 ~l~~L~~L~L~~n~-i~~~----~~l~~l~~L~~L~l~~n-~l~~~---~~l~~l~~L~~L~L~~N-~l~~~~-------  172 (291)
T 1h6t_A          110 DLKKLKSLSLEHNG-ISDI----NGLVHLPQLESLYLGNN-KITDI---TVLSRLTKLDTLSLEDN-QISDIV-------  172 (291)
T ss_dssp             TCTTCCEEECTTSC-CCCC----GGGGGCTTCCEEECCSS-CCCCC---GGGGGCTTCSEEECCSS-CCCCCG-------
T ss_pred             cCCCCCEEECCCCc-CCCC----hhhcCCCCCCEEEccCC-cCCcc---hhhccCCCCCEEEccCC-ccccch-------
Confidence            67888999888764 3333    12456788999999887 45554   34678889999999887 454444       


Q ss_pred             cccccCCCcceeccccccccccccCC-CCCCccEEeeeCCcCCCccC
Q 039808          268 SGCTALPRLKKLTLHYLPGLVTIWSS-AWPSLEYVSFYDCPRLKNIG  313 (358)
Q Consensus       268 ~~~~~l~~L~~L~l~~c~~L~~~~~~-~~~~L~~L~i~~C~~L~~lP  313 (358)
                       ....+++|+.|+++++ .++.++.- .+++|+.|++++++ +...|
T Consensus       173 -~l~~l~~L~~L~L~~N-~i~~l~~l~~l~~L~~L~l~~n~-i~~~~  216 (291)
T 1h6t_A          173 -PLAGLTKLQNLYLSKN-HISDLRALAGLKNLDVLELFSQE-CLNKP  216 (291)
T ss_dssp             -GGTTCTTCCEEECCSS-CCCBCGGGTTCTTCSEEEEEEEE-EECCC
T ss_pred             -hhcCCCccCEEECCCC-cCCCChhhccCCCCCEEECcCCc-ccCCc
Confidence             2677889999999776 67776544 78899999998875 44444

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=99.10  E-value=3.8e-11  Score=111.93  Aligned_cols=259  Identities=11%  Similarity=0.060  Sum_probs=123.6

Q ss_pred             cceeccCCC---CccCCchhhcCccccEEEeeecCCCcceeccc-chhhhhhcCCCCCceEEEEccCch----hHHHHHh
Q 039808            6 NVEYVKMPP---QLISSGIISRLHALKTLSIVVYPGDKRWYKDV-KSVVLEVCNLTELSSLCFHFPEIK----LLELFLQ   77 (358)
Q Consensus         6 ~L~~l~L~~---~~ip~~~i~~L~~L~~L~l~~~~~~~~~~~~~-~~~~~~l~~l~~L~~L~~~~~~l~----~l~~~~~   77 (358)
                      .|++..++.   ..++.. +..+++|++|++++ +.+.   ... ..+...+..+++|++|++..+.+.    .+|..+.
T Consensus        10 ~L~~~~l~~~~~~~l~~~-l~~~~~L~~L~L~~-n~i~---~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~   84 (386)
T 2ca6_A           10 SLKLDAITTEDEKSVFAV-LLEDDSVKEIVLSG-NTIG---TEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALR   84 (386)
T ss_dssp             CCEESSCCSHHHHTTSHH-HHHCSCCCEEECTT-SEEC---HHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHH
T ss_pred             ccccCCCCHHHHHHHHHH-HhcCCCccEEECCC-CCCC---HHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHH
Confidence            345555554   234444 57889999999988 2221   110 112345778999999988654332    1222111


Q ss_pred             hhccccccccceEEEEEeCccccccccCCcccccccccCCceEEeeCCCCCh------HHHHhhccCccEEEeccCCCCC
Q 039808           78 RCVAWNAQCLTEFRIVVGHDIKNIVSRVPDAVAFDYNKQGKCLRFINGENIP------DAVLQILACCTAFYLDNHLHIN  151 (358)
Q Consensus        78 ~~~~~~~~~L~~l~i~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~------~~~~~~l~~L~~L~l~~~~~~~  151 (358)
                      ...                            ..+..+++|+.|.+.++.-..      ......+++|+.|++.+| .+.
T Consensus        85 ~l~----------------------------~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n-~l~  135 (386)
T 2ca6_A           85 LLL----------------------------QALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNN-GLG  135 (386)
T ss_dssp             HHH----------------------------HHHTTCTTCCEEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSS-CCH
T ss_pred             HHH----------------------------HHHhhCCcccEEECCCCcCCHHHHHHHHHHHHhCCCCCEEECcCC-CCC
Confidence            000                            012222345555554443111      112234566666666666 332


Q ss_pred             ccCcc----cccCc---------cCCcEEEeecCCCce-EecCCCCccccCCCccceeeccccccccccc---ccccCCC
Q 039808          152 SLSDF----GVRSI---------NGLKFCIISECPKIE-TVVDGKELTTVIFPSLENLSIHHLWNLTHIC---EGSVPNG  214 (358)
Q Consensus       152 ~l~~~----~l~~l---------~~L~~L~l~~~~~~~-~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~---~~~~~~~  214 (358)
                      .....    .+..+         ++|++|++++|.... .++.. ...+..+++|++|.++++.- +...   ..+....
T Consensus       136 ~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l-~~~l~~~~~L~~L~L~~n~l-~~~g~~~l~~~~l~  213 (386)
T 2ca6_A          136 PQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEW-AKTFQSHRLLHTVKMVQNGI-RPEGIEHLLLEGLA  213 (386)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHH-HHHHHHCTTCCEEECCSSCC-CHHHHHHHHHTTGG
T ss_pred             HHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHH-HHHHHhCCCcCEEECcCCCC-CHhHHHHHHHHHhh
Confidence            21110    12223         666667666664221 11000 00123455666666666532 2100   0011233


Q ss_pred             cCccccEEeEecCCCcc-----ccCchhhhccCCCccEEEEecCCcccccccccccccccc--ccCCCcceecccccccc
Q 039808          215 SFARLRILSVHACPKLK-----FVFSSFMIHFMSNLEDLTVEDCPAIEEIISEGEIIDSGC--TALPRLKKLTLHYLPGL  287 (358)
Q Consensus       215 ~~~~L~~L~l~~c~~l~-----~l~~~~~l~~l~~L~~L~i~~c~~l~~i~~~~~~~~~~~--~~l~~L~~L~l~~c~~L  287 (358)
                      .+++|++|++++|. ++     .+  +..+..+++|+.|++++|. +......  .....+  +.+++|+.|++++| .+
T Consensus       214 ~~~~L~~L~Ls~n~-l~~~g~~~l--~~~l~~~~~L~~L~L~~n~-i~~~~~~--~l~~~l~~~~~~~L~~L~L~~n-~i  286 (386)
T 2ca6_A          214 YCQELKVLDLQDNT-FTHLGSSAL--AIALKSWPNLRELGLNDCL-LSARGAA--AVVDAFSKLENIGLQTLRLQYN-EI  286 (386)
T ss_dssp             GCTTCCEEECCSSC-CHHHHHHHH--HHHGGGCTTCCEEECTTCC-CCHHHHH--HHHHHHHTCSSCCCCEEECCSS-CC
T ss_pred             cCCCccEEECcCCC-CCcHHHHHH--HHHHccCCCcCEEECCCCC-CchhhHH--HHHHHHhhccCCCeEEEECcCC-cC
Confidence            56677777777664 32     11  1234567777777777764 2221000  000112  33677777777666 34


Q ss_pred             cc-----ccCC---CCCCccEEeeeCCc
Q 039808          288 VT-----IWSS---AWPSLEYVSFYDCP  307 (358)
Q Consensus       288 ~~-----~~~~---~~~~L~~L~i~~C~  307 (358)
                      +.     ++..   .+++|++|++++|+
T Consensus       287 ~~~g~~~l~~~l~~~l~~L~~L~l~~N~  314 (386)
T 2ca6_A          287 ELDAVRTLKTVIDEKMPDLLFLELNGNR  314 (386)
T ss_dssp             BHHHHHHHHHHHHHHCTTCCEEECTTSB
T ss_pred             CHHHHHHHHHHHHhcCCCceEEEccCCc
Confidence            44     4333   46777777777764

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=99.10  E-value=4.1e-10  Score=94.77  Aligned_cols=149  Identities=11%  Similarity=0.128  Sum_probs=109.5

Q ss_pred             ccccCCceEEeeCCC--CChHHHHhhccCccEEEeccCCCCCccCcccccCccCCcEEEeecCCCceEecCCCCccccCC
Q 039808          112 DYNKQGKCLRFINGE--NIPDAVLQILACCTAFYLDNHLHINSLSDFGVRSINGLKFCIISECPKIETVVDGKELTTVIF  189 (358)
Q Consensus       112 ~~~~~L~~L~l~~~~--~~~~~~~~~l~~L~~L~l~~~~~~~~l~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l  189 (358)
                      ..+.+++.|.+.++.  .++  ....+++|+.|++.++ .+..++  .+..+++|++|++++|......+..    ...+
T Consensus        41 ~~l~~L~~L~l~~n~i~~l~--~l~~l~~L~~L~l~~n-~~~~~~--~l~~l~~L~~L~l~~n~l~~~~~~~----l~~l  111 (197)
T 4ezg_A           41 AQMNSLTYITLANINVTDLT--GIEYAHNIKDLTINNI-HATNYN--PISGLSNLERLRIMGKDVTSDKIPN----LSGL  111 (197)
T ss_dssp             HHHHTCCEEEEESSCCSCCT--TGGGCTTCSEEEEESC-CCSCCG--GGTTCTTCCEEEEECTTCBGGGSCC----CTTC
T ss_pred             hhcCCccEEeccCCCccChH--HHhcCCCCCEEEccCC-CCCcch--hhhcCCCCCEEEeECCccCcccChh----hcCC
Confidence            444578888887764  333  3556889999999998 666665  4888999999999998543323233    5678


Q ss_pred             CccceeecccccccccccccccCCCcCccccEEeEecCCCccccCchhhhccCCCccEEEEecCCccccccccccccccc
Q 039808          190 PSLENLSIHHLWNLTHICEGSVPNGSFARLRILSVHACPKLKFVFSSFMIHFMSNLEDLTVEDCPAIEEIISEGEIIDSG  269 (358)
Q Consensus       190 ~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~l~~l~~L~~L~i~~c~~l~~i~~~~~~~~~~  269 (358)
                      ++|++|.++++.-....   +...+.+++|++|++++|..++.+   +.+..+++|+.|++++|. +..++        .
T Consensus       112 ~~L~~L~Ls~n~i~~~~---~~~l~~l~~L~~L~L~~n~~i~~~---~~l~~l~~L~~L~l~~n~-i~~~~--------~  176 (197)
T 4ezg_A          112 TSLTLLDISHSAHDDSI---LTKINTLPKVNSIDLSYNGAITDI---MPLKTLPELKSLNIQFDG-VHDYR--------G  176 (197)
T ss_dssp             TTCCEEECCSSBCBGGG---HHHHTTCSSCCEEECCSCTBCCCC---GGGGGCSSCCEEECTTBC-CCCCT--------T
T ss_pred             CCCCEEEecCCccCcHh---HHHHhhCCCCCEEEccCCCCcccc---HhhcCCCCCCEEECCCCC-CcChH--------H
Confidence            99999999987543322   222457899999999998767766   246889999999999874 44443        4


Q ss_pred             cccCCCcceeccccc
Q 039808          270 CTALPRLKKLTLHYL  284 (358)
Q Consensus       270 ~~~l~~L~~L~l~~c  284 (358)
                      ...+++|+.|++++.
T Consensus       177 l~~l~~L~~L~l~~N  191 (197)
T 4ezg_A          177 IEDFPKLNQLYAFSQ  191 (197)
T ss_dssp             GGGCSSCCEEEECBC
T ss_pred             hccCCCCCEEEeeCc
Confidence            678999999999765

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=99.09  E-value=9.5e-10  Score=98.46  Aligned_cols=163  Identities=13%  Similarity=0.158  Sum_probs=125.9

Q ss_pred             hhccCccEEEeccCCCCCccCcccccCccCCcEEEeecCCCceEecCCCCccccCCCccceeecccccccccccccccCC
Q 039808          134 QILACCTAFYLDNHLHINSLSDFGVRSINGLKFCIISECPKIETVVDGKELTTVIFPSLENLSIHHLWNLTHICEGSVPN  213 (358)
Q Consensus       134 ~~l~~L~~L~l~~~~~~~~l~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~  213 (358)
                      ..+++++.|++.++ .+..++  .++.+++|++|++++|. +..+..     ...+++|++|.++++. ++.+.    ..
T Consensus        43 ~~l~~L~~L~l~~~-~i~~~~--~~~~l~~L~~L~L~~n~-l~~~~~-----l~~l~~L~~L~l~~n~-l~~~~----~l  108 (291)
T 1h6t_A           43 NELNSIDQIIANNS-DIKSVQ--GIQYLPNVTKLFLNGNK-LTDIKP-----LANLKNLGWLFLDENK-VKDLS----SL  108 (291)
T ss_dssp             HHHHTCCEEECTTS-CCCCCT--TGGGCTTCCEEECCSSC-CCCCGG-----GTTCTTCCEEECCSSC-CCCGG----GG
T ss_pred             hhcCcccEEEccCC-CcccCh--hHhcCCCCCEEEccCCc-cCCCcc-----cccCCCCCEEECCCCc-CCCCh----hh
Confidence            45889999999998 777776  48899999999999984 333321     5678999999998864 44431    25


Q ss_pred             CcCccccEEeEecCCCccccCchhhhccCCCccEEEEecCCccccccccccccccccccCCCcceeccccccccccccCC
Q 039808          214 GSFARLRILSVHACPKLKFVFSSFMIHFMSNLEDLTVEDCPAIEEIISEGEIIDSGCTALPRLKKLTLHYLPGLVTIWSS  293 (358)
Q Consensus       214 ~~~~~L~~L~l~~c~~l~~l~~~~~l~~l~~L~~L~i~~c~~l~~i~~~~~~~~~~~~~l~~L~~L~l~~c~~L~~~~~~  293 (358)
                      +.+++|++|++++| +++.+   +.+..+++|+.|+++++ .+..+.        .+..+++|+.|+++++ .++.++.-
T Consensus       109 ~~l~~L~~L~L~~n-~i~~~---~~l~~l~~L~~L~l~~n-~l~~~~--------~l~~l~~L~~L~L~~N-~l~~~~~l  174 (291)
T 1h6t_A          109 KDLKKLKSLSLEHN-GISDI---NGLVHLPQLESLYLGNN-KITDIT--------VLSRLTKLDTLSLEDN-QISDIVPL  174 (291)
T ss_dssp             TTCTTCCEEECTTS-CCCCC---GGGGGCTTCCEEECCSS-CCCCCG--------GGGGCTTCSEEECCSS-CCCCCGGG
T ss_pred             ccCCCCCEEECCCC-cCCCC---hhhcCCCCCCEEEccCC-cCCcch--------hhccCCCCCEEEccCC-ccccchhh
Confidence            67899999999997 46655   34678999999999987 444443        4778999999999887 67666545


Q ss_pred             -CCCCccEEeeeCCcCCCccCCCCCCCCCeeEEE
Q 039808          294 -AWPSLEYVSFYDCPRLKNIGLGSNLKHSVMEIK  326 (358)
Q Consensus       294 -~~~~L~~L~i~~C~~L~~lP~~~~~~~~L~~~~  326 (358)
                       .+++|+.|++++| .++.+|. +..+++|+.+.
T Consensus       175 ~~l~~L~~L~L~~N-~i~~l~~-l~~l~~L~~L~  206 (291)
T 1h6t_A          175 AGLTKLQNLYLSKN-HISDLRA-LAGLKNLDVLE  206 (291)
T ss_dssp             TTCTTCCEEECCSS-CCCBCGG-GTTCTTCSEEE
T ss_pred             cCCCccCEEECCCC-cCCCChh-hccCCCCCEEE
Confidence             8999999999998 5888875 56677777664

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=99.08  E-value=7.5e-11  Score=109.90  Aligned_cols=235  Identities=13%  Similarity=0.050  Sum_probs=130.7

Q ss_pred             cccceeccCCCCccCCc-------hhhcCccccEEEeeecCCCcceec----ccchhhhhhcCCCCCceEEEEccCchh-
Q 039808            4 SCNVEYVKMPPQLISSG-------IISRLHALKTLSIVVYPGDKRWYK----DVKSVVLEVCNLTELSSLCFHFPEIKL-   71 (358)
Q Consensus         4 l~~L~~l~L~~~~ip~~-------~i~~L~~L~~L~l~~~~~~~~~~~----~~~~~~~~l~~l~~L~~L~~~~~~l~~-   71 (358)
                      +++|++|+|+...+...       .+.++++|++|+++++ ...++..    ....+...+..+++|++|++..+.+.. 
T Consensus        31 ~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~-~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~  109 (386)
T 2ca6_A           31 DDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDI-FTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPT  109 (386)
T ss_dssp             CSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSC-CTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCCCTT
T ss_pred             CCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCccc-ccCccccchhHHHHHHHHHHhhCCcccEEECCCCcCCHH
Confidence            46799999998444321       2568999999999983 2222221    112234456899999999997776654 


Q ss_pred             ----HHHHHhhhccccccccceEEEEEeCccccccccCCcccccccccCCceEEeeCCCCC---hHHHH---hhc-----
Q 039808           72 ----LELFLQRCVAWNAQCLTEFRIVVGHDIKNIVSRVPDAVAFDYNKQGKCLRFINGENI---PDAVL---QIL-----  136 (358)
Q Consensus        72 ----l~~~~~~~~~~~~~~L~~l~i~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~---~~~~~---~~l-----  136 (358)
                          ++..+.     .++                              +|+.|.+.++.-.   +..+.   ..+     
T Consensus       110 ~~~~l~~~l~-----~~~------------------------------~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~  154 (386)
T 2ca6_A          110 AQEPLIDFLS-----KHT------------------------------PLEHLYLHNNGLGPQAGAKIARALQELAVNKK  154 (386)
T ss_dssp             THHHHHHHHH-----HCT------------------------------TCCEEECCSSCCHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHH-----hCC------------------------------CCCEEECcCCCCCHHHHHHHHHHHHHHhhhhh
Confidence                443333     223                              4455555444310   01111   112     


Q ss_pred             ----cCccEEEeccCCCCC--ccCcc--cccCccCCcEEEeecCCCceE----ecCCCCccccCCCccceeeccccccc-
Q 039808          137 ----ACCTAFYLDNHLHIN--SLSDF--GVRSINGLKFCIISECPKIET----VVDGKELTTVIFPSLENLSIHHLWNL-  203 (358)
Q Consensus       137 ----~~L~~L~l~~~~~~~--~l~~~--~l~~l~~L~~L~l~~~~~~~~----~~~~~~~~~~~l~~L~~L~l~~~~~l-  203 (358)
                          ++|+.|++.++ .+.  .++..  .+..+++|++|++++|.....    +...   .+..+++|++|.++++.-. 
T Consensus       155 ~~~~~~L~~L~L~~n-~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~---~l~~~~~L~~L~Ls~n~l~~  230 (386)
T 2ca6_A          155 AKNAPPLRSIICGRN-RLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLE---GLAYCQELKVLDLQDNTFTH  230 (386)
T ss_dssp             HHTCCCCCEEECCSS-CCTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHT---TGGGCTTCCEEECCSSCCHH
T ss_pred             cccCCCCcEEECCCC-CCCcHHHHHHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHH---HhhcCCCccEEECcCCCCCc
Confidence                67777777776 443  22211  355677777887777732210    1110   1445677777777776531 


Q ss_pred             ---ccccccccCCCcCccccEEeEecCCCccccCch---hhh--ccCCCccEEEEecCCccc----ccccccccccccc-
Q 039808          204 ---THICEGSVPNGSFARLRILSVHACPKLKFVFSS---FMI--HFMSNLEDLTVEDCPAIE----EIISEGEIIDSGC-  270 (358)
Q Consensus       204 ---~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~---~~l--~~l~~L~~L~i~~c~~l~----~i~~~~~~~~~~~-  270 (358)
                         ..++   .....+++|++|++++|. ++.....   ..+  +.+++|+.|++++|.--.    .++       ... 
T Consensus       231 ~g~~~l~---~~l~~~~~L~~L~L~~n~-i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~-------~~l~  299 (386)
T 2ca6_A          231 LGSSALA---IALKSWPNLRELGLNDCL-LSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLK-------TVID  299 (386)
T ss_dssp             HHHHHHH---HHGGGCTTCCEEECTTCC-CCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHH-------HHHH
T ss_pred             HHHHHHH---HHHccCCCcCEEECCCCC-CchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHH-------HHHH
Confidence               2221   123456788888888775 4332111   122  237888888888874322    133       122 


Q ss_pred             ccCCCcceeccccccccccc
Q 039808          271 TALPRLKKLTLHYLPGLVTI  290 (358)
Q Consensus       271 ~~l~~L~~L~l~~c~~L~~~  290 (358)
                      ..+++|+.|++++++ ++..
T Consensus       300 ~~l~~L~~L~l~~N~-l~~~  318 (386)
T 2ca6_A          300 EKMPDLLFLELNGNR-FSEE  318 (386)
T ss_dssp             HHCTTCCEEECTTSB-SCTT
T ss_pred             hcCCCceEEEccCCc-CCcc
Confidence            457888888887763 4433

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=99.04  E-value=8.8e-10  Score=108.52  Aligned_cols=167  Identities=16%  Similarity=0.259  Sum_probs=103.3

Q ss_pred             cccccCCceEEeeCCC--CChHHHHhhccCccEEEeccCCCCCccCcccccCccCCcEEEeecCCCceEecCCCCccccC
Q 039808          111 FDYNKQGKCLRFINGE--NIPDAVLQILACCTAFYLDNHLHINSLSDFGVRSINGLKFCIISECPKIETVVDGKELTTVI  188 (358)
Q Consensus       111 l~~~~~L~~L~l~~~~--~~~~~~~~~l~~L~~L~l~~~~~~~~l~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~  188 (358)
                      ...+..|+.|.+.++.  .++  ....+++|+.|++.++ .+..++.  +..+++|+.|++++|. +..++     .+..
T Consensus        39 ~~~L~~L~~L~l~~n~i~~l~--~l~~l~~L~~L~Ls~N-~l~~~~~--l~~l~~L~~L~Ls~N~-l~~l~-----~l~~  107 (605)
T 1m9s_A           39 QNELNSIDQIIANNSDIKSVQ--GIQYLPNVTKLFLNGN-KLTDIKP--LTNLKNLGWLFLDENK-IKDLS-----SLKD  107 (605)
T ss_dssp             HHHHTTCCCCBCTTCCCCCCT--TGGGCTTCCEEECTTS-CCCCCGG--GGGCTTCCEEECCSSC-CCCCT-----TSTT
T ss_pred             hhcCCCCCEEECcCCCCCCCh--HHccCCCCCEEEeeCC-CCCCChh--hccCCCCCEEECcCCC-CCCCh-----hhcc
Confidence            3444456666665543  222  2345777777777777 5655553  6777778888777763 33331     1456


Q ss_pred             CCccceeecccccccccccccccCCCcCccccEEeEecCCCccccCchhhhccCCCccEEEEecCCcccccccccccccc
Q 039808          189 FPSLENLSIHHLWNLTHICEGSVPNGSFARLRILSVHACPKLKFVFSSFMIHFMSNLEDLTVEDCPAIEEIISEGEIIDS  268 (358)
Q Consensus       189 l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~l~~l~~L~~L~i~~c~~l~~i~~~~~~~~~  268 (358)
                      +++|+.|.++++. +..+    ...+.+++|+.|++++| .+..+   ..++.+++|+.|++++| .+..++        
T Consensus       108 l~~L~~L~Ls~N~-l~~l----~~l~~l~~L~~L~Ls~N-~l~~l---~~l~~l~~L~~L~Ls~N-~l~~~~--------  169 (605)
T 1m9s_A          108 LKKLKSLSLEHNG-ISDI----NGLVHLPQLESLYLGNN-KITDI---TVLSRLTKLDTLSLEDN-QISDIV--------  169 (605)
T ss_dssp             CTTCCEEECTTSC-CCCC----GGGGGCTTCSEEECCSS-CCCCC---GGGGSCTTCSEEECCSS-CCCCCG--------
T ss_pred             CCCCCEEEecCCC-CCCC----ccccCCCccCEEECCCC-ccCCc---hhhcccCCCCEEECcCC-cCCCch--------
Confidence            7777777777754 2332    12446677888888776 34444   34567778888888776 343333        


Q ss_pred             ccccCCCcceeccccccccccccCC-CCCCccEEeeeCCc
Q 039808          269 GCTALPRLKKLTLHYLPGLVTIWSS-AWPSLEYVSFYDCP  307 (358)
Q Consensus       269 ~~~~l~~L~~L~l~~c~~L~~~~~~-~~~~L~~L~i~~C~  307 (358)
                      .+..+++|+.|++++| .++.++.- .+++|+.|++++|+
T Consensus       170 ~l~~l~~L~~L~Ls~N-~i~~l~~l~~l~~L~~L~L~~N~  208 (605)
T 1m9s_A          170 PLAGLTKLQNLYLSKN-HISDLRALAGLKNLDVLELFSQE  208 (605)
T ss_dssp             GGTTCTTCCEEECCSS-CCCBCGGGTTCTTCSEEECCSEE
T ss_pred             hhccCCCCCEEECcCC-CCCCChHHccCCCCCEEEccCCc
Confidence            2567777888888766 56665433 67788888887764

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=99.01  E-value=1.7e-09  Score=106.53  Aligned_cols=164  Identities=13%  Similarity=0.152  Sum_probs=124.9

Q ss_pred             HhhccCccEEEeccCCCCCccCcccccCccCCcEEEeecCCCceEecCCCCccccCCCccceeecccccccccccccccC
Q 039808          133 LQILACCTAFYLDNHLHINSLSDFGVRSINGLKFCIISECPKIETVVDGKELTTVIFPSLENLSIHHLWNLTHICEGSVP  212 (358)
Q Consensus       133 ~~~l~~L~~L~l~~~~~~~~l~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~  212 (358)
                      ...+.+|+.|.+.++ .+..++  .++.+++|+.|+|++|. +..++.     +..+++|+.|.++++. +..+    ..
T Consensus        39 ~~~L~~L~~L~l~~n-~i~~l~--~l~~l~~L~~L~Ls~N~-l~~~~~-----l~~l~~L~~L~Ls~N~-l~~l----~~  104 (605)
T 1m9s_A           39 QNELNSIDQIIANNS-DIKSVQ--GIQYLPNVTKLFLNGNK-LTDIKP-----LTNLKNLGWLFLDENK-IKDL----SS  104 (605)
T ss_dssp             HHHHTTCCCCBCTTC-CCCCCT--TGGGCTTCCEEECTTSC-CCCCGG-----GGGCTTCCEEECCSSC-CCCC----TT
T ss_pred             hhcCCCCCEEECcCC-CCCCCh--HHccCCCCCEEEeeCCC-CCCChh-----hccCCCCCEEECcCCC-CCCC----hh
Confidence            345889999999988 777776  48899999999999984 333321     5678999999999874 4443    23


Q ss_pred             CCcCccccEEeEecCCCccccCchhhhccCCCccEEEEecCCccccccccccccccccccCCCcceeccccccccccccC
Q 039808          213 NGSFARLRILSVHACPKLKFVFSSFMIHFMSNLEDLTVEDCPAIEEIISEGEIIDSGCTALPRLKKLTLHYLPGLVTIWS  292 (358)
Q Consensus       213 ~~~~~~L~~L~l~~c~~l~~l~~~~~l~~l~~L~~L~i~~c~~l~~i~~~~~~~~~~~~~l~~L~~L~l~~c~~L~~~~~  292 (358)
                      .+.+++|+.|++++|. +..+   +.+..+++|+.|++++| .+..+.        .+..+++|+.|++++| .++.++.
T Consensus       105 l~~l~~L~~L~Ls~N~-l~~l---~~l~~l~~L~~L~Ls~N-~l~~l~--------~l~~l~~L~~L~Ls~N-~l~~~~~  170 (605)
T 1m9s_A          105 LKDLKKLKSLSLEHNG-ISDI---NGLVHLPQLESLYLGNN-KITDIT--------VLSRLTKLDTLSLEDN-QISDIVP  170 (605)
T ss_dssp             STTCTTCCEEECTTSC-CCCC---GGGGGCTTCSEEECCSS-CCCCCG--------GGGSCTTCSEEECCSS-CCCCCGG
T ss_pred             hccCCCCCEEEecCCC-CCCC---ccccCCCccCEEECCCC-ccCCch--------hhcccCCCCEEECcCC-cCCCchh
Confidence            5678999999999974 5554   34678999999999987 444433        4778999999999887 5666544


Q ss_pred             C-CCCCccEEeeeCCcCCCccCCCCCCCCCeeEEE
Q 039808          293 S-AWPSLEYVSFYDCPRLKNIGLGSNLKHSVMEIK  326 (358)
Q Consensus       293 ~-~~~~L~~L~i~~C~~L~~lP~~~~~~~~L~~~~  326 (358)
                      - .+++|+.|++++| .+..+|. +..+++|+.+.
T Consensus       171 l~~l~~L~~L~Ls~N-~i~~l~~-l~~l~~L~~L~  203 (605)
T 1m9s_A          171 LAGLTKLQNLYLSKN-HISDLRA-LAGLKNLDVLE  203 (605)
T ss_dssp             GTTCTTCCEEECCSS-CCCBCGG-GTTCTTCSEEE
T ss_pred             hccCCCCCEEECcCC-CCCCChH-HccCCCCCEEE
Confidence            5 8999999999998 4777753 45566776664

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=98.95  E-value=2.1e-08  Score=87.55  Aligned_cols=168  Identities=14%  Similarity=0.093  Sum_probs=121.6

Q ss_pred             ccEEEeccCCCCCccCcccccCccCCcEEEeecCCCceEecCCCCccccCCCccceeecccccccccccccccCCCcCcc
Q 039808          139 CTAFYLDNHLHINSLSDFGVRSINGLKFCIISECPKIETVVDGKELTTVIFPSLENLSIHHLWNLTHICEGSVPNGSFAR  218 (358)
Q Consensus       139 L~~L~l~~~~~~~~l~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~  218 (358)
                      .+.+++.+. .+..++.. +  .++++.|++++|.. ..+...   ....+++|++|+++++. ++.+.  +...+.+++
T Consensus        16 ~~~l~~~~~-~l~~~p~~-~--~~~l~~L~L~~n~l-~~~~~~---~~~~l~~L~~L~L~~n~-l~~~~--~~~~~~l~~   84 (251)
T 3m19_A           16 KKEVDCQGK-SLDSVPSG-I--PADTEKLDLQSTGL-ATLSDA---TFRGLTKLTWLNLDYNQ-LQTLS--AGVFDDLTE   84 (251)
T ss_dssp             GTEEECTTC-CCSSCCSC-C--CTTCCEEECTTSCC-CCCCTT---TTTTCTTCCEEECTTSC-CCCCC--TTTTTTCTT
T ss_pred             CeEEecCCC-CccccCCC-C--CCCCCEEEccCCCc-CccCHh---HhcCcccCCEEECCCCc-CCccC--HhHhccCCc
Confidence            455666655 66666642 2  36899999998854 333232   25678999999999864 44332  222457899


Q ss_pred             ccEEeEecCCCccccCchhhhccCCCccEEEEecCCccccccccccccccccccCCCcceeccccccccccccCC---CC
Q 039808          219 LRILSVHACPKLKFVFSSFMIHFMSNLEDLTVEDCPAIEEIISEGEIIDSGCTALPRLKKLTLHYLPGLVTIWSS---AW  295 (358)
Q Consensus       219 L~~L~l~~c~~l~~l~~~~~l~~l~~L~~L~i~~c~~l~~i~~~~~~~~~~~~~l~~L~~L~l~~c~~L~~~~~~---~~  295 (358)
                      |++|+++++ +++.+++ ..+..+++|+.|+++++ .+..++.      ..+..+++|+.|+++++ .++.++..   .+
T Consensus        85 L~~L~L~~n-~l~~~~~-~~~~~l~~L~~L~L~~N-~l~~~~~------~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l  154 (251)
T 3m19_A           85 LGTLGLANN-QLASLPL-GVFDHLTQLDKLYLGGN-QLKSLPS------GVFDRLTKLKELRLNTN-QLQSIPAGAFDKL  154 (251)
T ss_dssp             CCEEECTTS-CCCCCCT-TTTTTCTTCCEEECCSS-CCCCCCT------TTTTTCTTCCEEECCSS-CCCCCCTTTTTTC
T ss_pred             CCEEECCCC-cccccCh-hHhcccCCCCEEEcCCC-cCCCcCh------hHhccCCcccEEECcCC-cCCccCHHHcCcC
Confidence            999999987 4665533 45678999999999987 5555541      23567899999999877 78888875   78


Q ss_pred             CCccEEeeeCCcCCCccCC-CCCCCCCeeEEEec
Q 039808          296 PSLEYVSFYDCPRLKNIGL-GSNLKHSVMEIKAE  328 (358)
Q Consensus       296 ~~L~~L~i~~C~~L~~lP~-~~~~~~~L~~~~~~  328 (358)
                      ++|++|+++++ .++.+|. .+..+++|+.+...
T Consensus       155 ~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~l~  187 (251)
T 3m19_A          155 TNLQTLSLSTN-QLQSVPHGAFDRLGKLQTITLF  187 (251)
T ss_dssp             TTCCEEECCSS-CCSCCCTTTTTTCTTCCEEECC
T ss_pred             cCCCEEECCCC-cCCccCHHHHhCCCCCCEEEee
Confidence            99999999998 5778876 45678899988653

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=98.93  E-value=8.1e-09  Score=90.97  Aligned_cols=144  Identities=22%  Similarity=0.223  Sum_probs=70.0

Q ss_pred             hccCccEEEeccCCCCCccCcccccCccCCcEEEeecCCCceEecCCCCccccCCCccceeecccccccccccccccCCC
Q 039808          135 ILACCTAFYLDNHLHINSLSDFGVRSINGLKFCIISECPKIETVVDGKELTTVIFPSLENLSIHHLWNLTHICEGSVPNG  214 (358)
Q Consensus       135 ~l~~L~~L~l~~~~~~~~l~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~  214 (358)
                      .+++++.|++.++ .+..++  .++.+++|++|++++|. +..++.     ...+++|++|+++++. ++.+..    ..
T Consensus        39 ~l~~L~~L~l~~n-~i~~l~--~l~~l~~L~~L~L~~N~-i~~~~~-----l~~l~~L~~L~L~~N~-l~~l~~----~~  104 (263)
T 1xeu_A           39 ELSGVQNFNGDNS-NIQSLA--GMQFFTNLKELHLSHNQ-ISDLSP-----LKDLTKLEELSVNRNR-LKNLNG----IP  104 (263)
T ss_dssp             HHTTCSEEECTTS-CCCCCT--TGGGCTTCCEEECCSSC-CCCCGG-----GTTCSSCCEEECCSSC-CSCCTT----CC
T ss_pred             hcCcCcEEECcCC-Ccccch--HHhhCCCCCEEECCCCc-cCCChh-----hccCCCCCEEECCCCc-cCCcCc----cc
Confidence            3455555555555 444444  25555556666665552 222211     3345555555555542 222211    11


Q ss_pred             cCccccEEeEecCCCccccCchhhhccCCCccEEEEecCCccccccccccccccccccCCCcceeccccccccccccCC-
Q 039808          215 SFARLRILSVHACPKLKFVFSSFMIHFMSNLEDLTVEDCPAIEEIISEGEIIDSGCTALPRLKKLTLHYLPGLVTIWSS-  293 (358)
Q Consensus       215 ~~~~L~~L~l~~c~~l~~l~~~~~l~~l~~L~~L~i~~c~~l~~i~~~~~~~~~~~~~l~~L~~L~l~~c~~L~~~~~~-  293 (358)
                      . ++|++|++++| .++.+   +.+..+++|+.|+++++ .+..++        .+..+++|+.|+++++ .++.+..- 
T Consensus       105 ~-~~L~~L~L~~N-~l~~~---~~l~~l~~L~~L~Ls~N-~i~~~~--------~l~~l~~L~~L~L~~N-~i~~~~~l~  169 (263)
T 1xeu_A          105 S-ACLSRLFLDNN-ELRDT---DSLIHLKNLEILSIRNN-KLKSIV--------MLGFLSKLEVLDLHGN-EITNTGGLT  169 (263)
T ss_dssp             C-SSCCEEECCSS-CCSBS---GGGTTCTTCCEEECTTS-CCCBCG--------GGGGCTTCCEEECTTS-CCCBCTTST
T ss_pred             c-CcccEEEccCC-ccCCC---hhhcCcccccEEECCCC-cCCCCh--------HHccCCCCCEEECCCC-cCcchHHhc
Confidence            1 55666666655 34433   12455666666666554 233332        3445566666666554 44444222 


Q ss_pred             CCCCccEEeeeCCc
Q 039808          294 AWPSLEYVSFYDCP  307 (358)
Q Consensus       294 ~~~~L~~L~i~~C~  307 (358)
                      .+++|+.|++++++
T Consensus       170 ~l~~L~~L~l~~N~  183 (263)
T 1xeu_A          170 RLKKVNWIDLTGQK  183 (263)
T ss_dssp             TCCCCCEEEEEEEE
T ss_pred             cCCCCCEEeCCCCc
Confidence            55666666666653

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=98.88  E-value=7.3e-09  Score=87.71  Aligned_cols=161  Identities=16%  Similarity=0.163  Sum_probs=87.2

Q ss_pred             ccCccEEEeccCCCCCccCcccccCccCCcEEEeecCCCceEecCCCCccccCCCccceeecccccccccccccccCCCc
Q 039808          136 LACCTAFYLDNHLHINSLSDFGVRSINGLKFCIISECPKIETVVDGKELTTVIFPSLENLSIHHLWNLTHICEGSVPNGS  215 (358)
Q Consensus       136 l~~L~~L~l~~~~~~~~l~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~  215 (358)
                      .++++.|++.++ .+..++...++++++|++|++++| .+..++...   ...+++|++|+++++. ++.+.  +...+.
T Consensus        27 ~~~l~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~---~~~l~~L~~L~Ls~n~-l~~~~--~~~~~~   98 (208)
T 2o6s_A           27 PAQTTYLDLETN-SLKSLPNGVFDELTSLTQLYLGGN-KLQSLPNGV---FNKLTSLTYLNLSTNQ-LQSLP--NGVFDK   98 (208)
T ss_dssp             CTTCSEEECCSS-CCCCCCTTTTTTCTTCSEEECCSS-CCCCCCTTT---TTTCTTCCEEECCSSC-CCCCC--TTTTTT
T ss_pred             CCCCcEEEcCCC-ccCcCChhhhcccccCcEEECCCC-ccCccChhh---cCCCCCcCEEECCCCc-CCccC--HhHhcC
Confidence            345666666666 555554434566777777777665 333332221   3445667777666642 22221  111245


Q ss_pred             CccccEEeEecCCCccccCchhhhccCCCccEEEEecCCccccccccccccccccccCCCcceeccccccccccccCCCC
Q 039808          216 FARLRILSVHACPKLKFVFSSFMIHFMSNLEDLTVEDCPAIEEIISEGEIIDSGCTALPRLKKLTLHYLPGLVTIWSSAW  295 (358)
Q Consensus       216 ~~~L~~L~l~~c~~l~~l~~~~~l~~l~~L~~L~i~~c~~l~~i~~~~~~~~~~~~~l~~L~~L~l~~c~~L~~~~~~~~  295 (358)
                      +++|++|+++++ +++.+++ ..+..+++|+.|+++++ .+..++.      ..+..+++|+.|++++++-..     .+
T Consensus        99 l~~L~~L~L~~N-~l~~~~~-~~~~~l~~L~~L~l~~N-~l~~~~~------~~~~~l~~L~~L~l~~N~~~~-----~~  164 (208)
T 2o6s_A           99 LTQLKELALNTN-QLQSLPD-GVFDKLTQLKDLRLYQN-QLKSVPD------GVFDRLTSLQYIWLHDNPWDC-----TC  164 (208)
T ss_dssp             CTTCCEEECCSS-CCCCCCT-TTTTTCTTCCEEECCSS-CCSCCCT------TTTTTCTTCCEEECCSCCBCC-----CT
T ss_pred             ccCCCEEEcCCC-cCcccCH-hHhccCCcCCEEECCCC-ccceeCH------HHhccCCCccEEEecCCCeec-----CC
Confidence            667777777665 3444422 23456677777777765 3333331      124556677777776653111     35


Q ss_pred             CCccEEeeeCCcCCCccCCCCCC
Q 039808          296 PSLEYVSFYDCPRLKNIGLGSNL  318 (358)
Q Consensus       296 ~~L~~L~i~~C~~L~~lP~~~~~  318 (358)
                      ++|+.|+++++..-..+|..++.
T Consensus       165 ~~l~~L~~~~n~~~g~ip~~~~~  187 (208)
T 2o6s_A          165 PGIRYLSEWINKHSGVVRNSAGS  187 (208)
T ss_dssp             TTTHHHHHHHHHCTTTBBCTTSS
T ss_pred             CCHHHHHHHHHhCCceeeccCcc
Confidence            66666666666555566655543

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=98.86  E-value=8.2e-09  Score=84.25  Aligned_cols=92  Identities=17%  Similarity=0.205  Sum_probs=55.5

Q ss_pred             CcCccccEEeEecCCCccccCchhhhccCCCccEEEEecCCccccccccccccccccccCCCcceeccccccccccccC-
Q 039808          214 GSFARLRILSVHACPKLKFVFSSFMIHFMSNLEDLTVEDCPAIEEIISEGEIIDSGCTALPRLKKLTLHYLPGLVTIWS-  292 (358)
Q Consensus       214 ~~~~~L~~L~l~~c~~l~~l~~~~~l~~l~~L~~L~i~~c~~l~~i~~~~~~~~~~~~~l~~L~~L~l~~c~~L~~~~~-  292 (358)
                      +.+++|++|++++|. +...++ ..+..+++|+.|++++| .+..++..     ..+..+++|+.|+++++ .++.++. 
T Consensus        68 ~~l~~L~~L~Ls~N~-l~~~~~-~~~~~l~~L~~L~Ls~N-~l~~~~~~-----~~l~~l~~L~~L~l~~N-~l~~~~~~  138 (168)
T 2ell_A           68 PKLPKLKKLELSENR-IFGGLD-MLAEKLPNLTHLNLSGN-KLKDISTL-----EPLKKLECLKSLDLFNC-EVTNLNDY  138 (168)
T ss_dssp             CCCSSCCEEEEESCC-CCSCCC-HHHHHCTTCCEEECBSS-SCCSSGGG-----GGGSSCSCCCEEECCSS-GGGTSTTH
T ss_pred             ccCCCCCEEECcCCc-CchHHH-HHHhhCCCCCEEeccCC-ccCcchhH-----HHHhcCCCCCEEEeeCC-cCcchHHH
Confidence            345667777776653 333222 34456777777777776 44443210     13556777888887766 4555655 


Q ss_pred             ---C--CCCCccEEeeeCCcCCCccCCC
Q 039808          293 ---S--AWPSLEYVSFYDCPRLKNIGLG  315 (358)
Q Consensus       293 ---~--~~~~L~~L~i~~C~~L~~lP~~  315 (358)
                         .  .+++|++|++++|. +..+|..
T Consensus       139 ~~~~~~~l~~L~~L~l~~n~-~~~~~~~  165 (168)
T 2ell_A          139 RESVFKLLPQLTYLDGYDRE-DQEAPDS  165 (168)
T ss_dssp             HHHHHTTCSSCCEETTEETT-SCBCCSS
T ss_pred             HHHHHHhCccCcEecCCCCC-hhhcccc
Confidence               2  67788888888774 5666644

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=98.86  E-value=2.6e-08  Score=85.77  Aligned_cols=107  Identities=20%  Similarity=0.186  Sum_probs=60.4

Q ss_pred             cCCCccceeecccccccccccccccCCCcCccccEEeEecCCCccccCchhhhccCCCccEEEEecCCcccccccccccc
Q 039808          187 VIFPSLENLSIHHLWNLTHICEGSVPNGSFARLRILSVHACPKLKFVFSSFMIHFMSNLEDLTVEDCPAIEEIISEGEII  266 (358)
Q Consensus       187 ~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~l~~l~~L~~L~i~~c~~l~~i~~~~~~~  266 (358)
                      ..+++|++|++++.. ++.+.  +..++.+++|++|+++++ +++.+++ ..+..+++|+.|+++++ .+..++      
T Consensus        61 ~~l~~L~~L~L~~N~-l~~i~--~~~~~~l~~L~~L~Ls~N-~l~~l~~-~~~~~l~~L~~L~Ls~N-~l~~lp------  128 (229)
T 3e6j_A           61 DSLINLKELYLGSNQ-LGALP--VGVFDSLTQLTVLDLGTN-QLTVLPS-AVFDRLVHLKELFMCCN-KLTELP------  128 (229)
T ss_dssp             TTCTTCCEEECCSSC-CCCCC--TTTTTTCTTCCEEECCSS-CCCCCCT-TTTTTCTTCCEEECCSS-CCCSCC------
T ss_pred             hCccCCcEEECCCCC-CCCcC--hhhcccCCCcCEEECCCC-cCCccCh-hHhCcchhhCeEeccCC-cccccC------
Confidence            344555555555432 22221  111234566666666665 4444422 33456777777777765 444554      


Q ss_pred             ccccccCCCcceeccccccccccccCC---CCCCccEEeeeCCc
Q 039808          267 DSGCTALPRLKKLTLHYLPGLVTIWSS---AWPSLEYVSFYDCP  307 (358)
Q Consensus       267 ~~~~~~l~~L~~L~l~~c~~L~~~~~~---~~~~L~~L~i~~C~  307 (358)
                       ..+..+++|+.|+++++ .++.++..   .+++|+.|++.+++
T Consensus       129 -~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~l~~N~  170 (229)
T 3e6j_A          129 -RGIERLTHLTHLALDQN-QLKSIPHGAFDRLSSLTHAYLFGNP  170 (229)
T ss_dssp             -TTGGGCTTCSEEECCSS-CCCCCCTTTTTTCTTCCEEECTTSC
T ss_pred             -cccccCCCCCEEECCCC-cCCccCHHHHhCCCCCCEEEeeCCC
Confidence             34566777777777654 56666654   56777777777764

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=98.85  E-value=1.9e-08  Score=82.00  Aligned_cols=140  Identities=17%  Similarity=0.156  Sum_probs=98.0

Q ss_pred             hccCccEEEeccCCCCC--ccCcccccCccCCcEEEeecCCCceEecCCCCccccCCCccceeecccccccccccccccC
Q 039808          135 ILACCTAFYLDNHLHIN--SLSDFGVRSINGLKFCIISECPKIETVVDGKELTTVIFPSLENLSIHHLWNLTHICEGSVP  212 (358)
Q Consensus       135 ~l~~L~~L~l~~~~~~~--~l~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~  212 (358)
                      ..++++.|++.++ .+.  .++. .+..+++|++|++++|. +..+ ..    ...+++|++|+++++.-...+   +..
T Consensus        22 ~~~~L~~L~l~~n-~l~~~~i~~-~~~~l~~L~~L~l~~n~-l~~~-~~----~~~l~~L~~L~Ls~N~l~~~~---~~~   90 (168)
T 2ell_A           22 TPAAVRELVLDNC-KSNDGKIEG-LTAEFVNLEFLSLINVG-LISV-SN----LPKLPKLKKLELSENRIFGGL---DML   90 (168)
T ss_dssp             CTTSCSEEECCSC-BCBTTBCSS-CCGGGGGCCEEEEESSC-CCCC-SS----CCCCSSCCEEEEESCCCCSCC---CHH
T ss_pred             CcccCCEEECCCC-CCChhhHHH-HHHhCCCCCEEeCcCCC-CCCh-hh----hccCCCCCEEECcCCcCchHH---HHH
Confidence            3578999999998 665  6665 37889999999999985 4444 22    567899999999887543322   222


Q ss_pred             CCcCccccEEeEecCCCccccCchhhhccCCCccEEEEecCCccccccccccccccccccCCCcceecccccccccccc
Q 039808          213 NGSFARLRILSVHACPKLKFVFSSFMIHFMSNLEDLTVEDCPAIEEIISEGEIIDSGCTALPRLKKLTLHYLPGLVTIW  291 (358)
Q Consensus       213 ~~~~~~L~~L~l~~c~~l~~l~~~~~l~~l~~L~~L~i~~c~~l~~i~~~~~~~~~~~~~l~~L~~L~l~~c~~L~~~~  291 (358)
                      .+.+++|++|++++| .++.++....+..+++|+.|+++++ .+..++..   ....+..+|+|+.|++.+|. ++.++
T Consensus        91 ~~~l~~L~~L~Ls~N-~l~~~~~~~~l~~l~~L~~L~l~~N-~l~~~~~~---~~~~~~~l~~L~~L~l~~n~-~~~~~  163 (168)
T 2ell_A           91 AEKLPNLTHLNLSGN-KLKDISTLEPLKKLECLKSLDLFNC-EVTNLNDY---RESVFKLLPQLTYLDGYDRE-DQEAP  163 (168)
T ss_dssp             HHHCTTCCEEECBSS-SCCSSGGGGGGSSCSCCCEEECCSS-GGGTSTTH---HHHHHTTCSSCCEETTEETT-SCBCC
T ss_pred             HhhCCCCCEEeccCC-ccCcchhHHHHhcCCCCCEEEeeCC-cCcchHHH---HHHHHHhCccCcEecCCCCC-hhhcc
Confidence            335789999999988 5666533345678999999999987 34443310   00136678999999998874 44444

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=98.83  E-value=2.2e-09  Score=99.10  Aligned_cols=47  Identities=13%  Similarity=0.123  Sum_probs=29.2

Q ss_pred             hhcCccccEEEeeecCCCcceecccchhhhhhcCCC-CCceEEEEccCchh
Q 039808           22 ISRLHALKTLSIVVYPGDKRWYKDVKSVVLEVCNLT-ELSSLCFHFPEIKL   71 (358)
Q Consensus        22 i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~l~-~L~~L~~~~~~l~~   71 (358)
                      ++...+|++|++++ +.+.....  ......+.+++ +|++|++..+.+..
T Consensus        18 ~~~~~~L~~L~Ls~-n~l~~~~~--~~l~~~l~~~~~~L~~L~Ls~N~l~~   65 (362)
T 3goz_A           18 TSIPHGVTSLDLSL-NNLYSIST--VELIQAFANTPASVTSLNLSGNSLGF   65 (362)
T ss_dssp             HTSCTTCCEEECTT-SCGGGSCH--HHHHHHHHTCCTTCCEEECCSSCGGG
T ss_pred             HhCCCCceEEEccC-CCCChHHH--HHHHHHHHhCCCceeEEECcCCCCCH
Confidence            44455689999888 33332111  12235677888 89998887776654

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=98.83  E-value=1.1e-09  Score=101.22  Aligned_cols=243  Identities=9%  Similarity=-0.019  Sum_probs=112.9

Q ss_pred             cccceeccCCCCc---cCC----chhhcCc-cccEEEeeecCCCcceecccchhhhhhcCC-CCCceEEEEccCchhHHH
Q 039808            4 SCNVEYVKMPPQL---ISS----GIISRLH-ALKTLSIVVYPGDKRWYKDVKSVVLEVCNL-TELSSLCFHFPEIKLLEL   74 (358)
Q Consensus         4 l~~L~~l~L~~~~---ip~----~~i~~L~-~L~~L~l~~~~~~~~~~~~~~~~~~~l~~l-~~L~~L~~~~~~l~~l~~   74 (358)
                      ..+|++|+|+...   .+.    ..+.+++ +|++|++++ +.+....  .......+... ++|++|++..+.+.....
T Consensus        21 ~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~-N~l~~~~--~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~   97 (362)
T 3goz_A           21 PHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSG-NSLGFKN--SDELVQILAAIPANVTSLNLSGNFLSYKSS   97 (362)
T ss_dssp             CTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCS-SCGGGSC--HHHHHHHHHTSCTTCCEEECCSSCGGGSCH
T ss_pred             CCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcC-CCCCHHH--HHHHHHHHhccCCCccEEECcCCcCChHHH
Confidence            3457888888733   333    4456677 788888887 3332110  01112223333 778888876666543221


Q ss_pred             -HHhhhccccccccceEEEEEeCccccccccCCcccccccc-cCCceEEeeCCC--CChH-HHHhh----ccCccEEEec
Q 039808           75 -FLQRCVAWNAQCLTEFRIVVGHDIKNIVSRVPDAVAFDYN-KQGKCLRFINGE--NIPD-AVLQI----LACCTAFYLD  145 (358)
Q Consensus        75 -~~~~~~~~~~~~L~~l~i~~~~~~~~~~~~~~~~~~l~~~-~~L~~L~l~~~~--~~~~-~~~~~----l~~L~~L~l~  145 (358)
                       .+..                               .+... ..|+.|.+.++.  .... .+...    .++|+.|++.
T Consensus        98 ~~l~~-------------------------------~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls  146 (362)
T 3goz_A           98 DELVK-------------------------------TLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLR  146 (362)
T ss_dssp             HHHHH-------------------------------HHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECT
T ss_pred             HHHHH-------------------------------HHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEcc
Confidence             1110                               11111 367777777664  2222 22222    2477777777


Q ss_pred             cCCCCCccCcc----cccCcc-CCcEEEeecCCCceEecCCCCccccCC-Cccceeeccccccccccccc--ccCCCc-C
Q 039808          146 NHLHINSLSDF----GVRSIN-GLKFCIISECPKIETVVDGKELTTVIF-PSLENLSIHHLWNLTHICEG--SVPNGS-F  216 (358)
Q Consensus       146 ~~~~~~~l~~~----~l~~l~-~L~~L~l~~~~~~~~~~~~~~~~~~~l-~~L~~L~l~~~~~l~~~~~~--~~~~~~-~  216 (358)
                      ++ .+......    .+..++ +|++|++++|......+..-...+... ++|++|+++++.- +.....  +..... .
T Consensus       147 ~N-~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i-~~~~~~~l~~~l~~~~  224 (362)
T 3goz_A          147 GN-DLGIKSSDELIQILAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLL-GLKSYAELAYIFSSIP  224 (362)
T ss_dssp             TS-CGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCG-GGSCHHHHHHHHHHSC
T ss_pred             CC-cCCHHHHHHHHHHHhcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCC-ChhHHHHHHHHHhcCC
Confidence            76 44421111    234444 777777777632221100000012233 3777777766542 220000  000111 2


Q ss_pred             ccccEEeEecCCCccccCch---hhhccCCCccEEEEecCCcccccccc-ccccccccccCCCcceeccccc
Q 039808          217 ARLRILSVHACPKLKFVFSS---FMIHFMSNLEDLTVEDCPAIEEIISE-GEIIDSGCTALPRLKKLTLHYL  284 (358)
Q Consensus       217 ~~L~~L~l~~c~~l~~l~~~---~~l~~l~~L~~L~i~~c~~l~~i~~~-~~~~~~~~~~l~~L~~L~l~~c  284 (358)
                      ++|++|++++| .++..+..   ..+..+++|+.|++++|. +..+... -.........+++|+.|+++++
T Consensus       225 ~~L~~L~Ls~N-~l~~~~~~~l~~~~~~l~~L~~L~L~~n~-l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N  294 (362)
T 3goz_A          225 NHVVSLNLCLN-CLHGPSLENLKLLKDSLKHLQTVYLDYDI-VKNMSKEQCKALGAAFPNIQKIILVDKNGK  294 (362)
T ss_dssp             TTCCEEECCSS-CCCCCCHHHHHHTTTTTTTCSEEEEEHHH-HTTCCHHHHHHHHTTSTTCCEEEEECTTSC
T ss_pred             CCceEEECcCC-CCCcHHHHHHHHHHhcCCCccEEEeccCC-ccccCHHHHHHHHHHhccCCceEEEecCCC
Confidence            46777777765 34443221   223456677777777663 1110000 0000023445566666666554

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=98.77  E-value=1.1e-07  Score=81.31  Aligned_cols=82  Identities=16%  Similarity=0.090  Sum_probs=38.5

Q ss_pred             cCccccEEeEecCCCccccCchhhhccCCCccEEEEecCCccccccccccccccccccCCCcceeccccccccccccCC-
Q 039808          215 SFARLRILSVHACPKLKFVFSSFMIHFMSNLEDLTVEDCPAIEEIISEGEIIDSGCTALPRLKKLTLHYLPGLVTIWSS-  293 (358)
Q Consensus       215 ~~~~L~~L~l~~c~~l~~l~~~~~l~~l~~L~~L~i~~c~~l~~i~~~~~~~~~~~~~l~~L~~L~l~~c~~L~~~~~~-  293 (358)
                      .+++|++|+++++ .++.+++ ..+..+++|+.|+++++ .+..++      ...+..+++|+.|+++++ .++.++.. 
T Consensus        78 ~l~~L~~L~Ls~N-~l~~l~~-~~f~~l~~L~~L~L~~N-~l~~~~------~~~~~~l~~L~~L~L~~N-~l~~~~~~~  147 (220)
T 2v9t_B           78 GLRSLNSLVLYGN-KITELPK-SLFEGLFSLQLLLLNAN-KINCLR------VDAFQDLHNLNLLSLYDN-KLQTIAKGT  147 (220)
T ss_dssp             TCSSCCEEECCSS-CCCCCCT-TTTTTCTTCCEEECCSS-CCCCCC------TTTTTTCTTCCEEECCSS-CCSCCCTTT
T ss_pred             CCcCCCEEECCCC-cCCccCH-hHccCCCCCCEEECCCC-CCCEeC------HHHcCCCCCCCEEECCCC-cCCEECHHH
Confidence            3445555555443 2333322 23345555555555554 232222      023445555666666544 45544443 


Q ss_pred             --CCCCccEEeeeCC
Q 039808          294 --AWPSLEYVSFYDC  306 (358)
Q Consensus       294 --~~~~L~~L~i~~C  306 (358)
                        .+++|+.|+++++
T Consensus       148 ~~~l~~L~~L~L~~N  162 (220)
T 2v9t_B          148 FSPLRAIQTMHLAQN  162 (220)
T ss_dssp             TTTCTTCCEEECCSS
T ss_pred             HhCCCCCCEEEeCCC
Confidence              4556666666554

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=98.75  E-value=1.8e-07  Score=79.93  Aligned_cols=84  Identities=15%  Similarity=0.167  Sum_probs=47.5

Q ss_pred             CcCccccEEeEecCCCccccCchhhhccCCCccEEEEecCCccccccccccccccccccCCCcceeccccccccccccCC
Q 039808          214 GSFARLRILSVHACPKLKFVFSSFMIHFMSNLEDLTVEDCPAIEEIISEGEIIDSGCTALPRLKKLTLHYLPGLVTIWSS  293 (358)
Q Consensus       214 ~~~~~L~~L~l~~c~~l~~l~~~~~l~~l~~L~~L~i~~c~~l~~i~~~~~~~~~~~~~l~~L~~L~l~~c~~L~~~~~~  293 (358)
                      +.+++|++|+++++ .++.+.+ ..+..+++|+.|+++++. +..++      ...+..+++|+.|+++++ .++.++..
T Consensus        78 ~~l~~L~~L~Ls~N-~l~~~~~-~~~~~l~~L~~L~Ls~N~-l~~~~------~~~~~~l~~L~~L~L~~N-~l~~~~~~  147 (220)
T 2v70_A           78 EGASGVNEILLTSN-RLENVQH-KMFKGLESLKTLMLRSNR-ITCVG------NDSFIGLSSVRLLSLYDN-QITTVAPG  147 (220)
T ss_dssp             TTCTTCCEEECCSS-CCCCCCG-GGGTTCSSCCEEECTTSC-CCCBC------TTSSTTCTTCSEEECTTS-CCCCBCTT
T ss_pred             CCCCCCCEEECCCC-ccCccCH-hHhcCCcCCCEEECCCCc-CCeEC------HhHcCCCccCCEEECCCC-cCCEECHH
Confidence            34556666666654 2444322 334566777777776653 33332      123556677777777654 56655433


Q ss_pred             ---CCCCccEEeeeCCc
Q 039808          294 ---AWPSLEYVSFYDCP  307 (358)
Q Consensus       294 ---~~~~L~~L~i~~C~  307 (358)
                         .+++|+.|++++++
T Consensus       148 ~~~~l~~L~~L~L~~N~  164 (220)
T 2v70_A          148 AFDTLHSLSTLNLLANP  164 (220)
T ss_dssp             TTTTCTTCCEEECCSCC
T ss_pred             HhcCCCCCCEEEecCcC
Confidence               56777777777654

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=98.74  E-value=1.8e-07  Score=79.06  Aligned_cols=141  Identities=16%  Similarity=0.162  Sum_probs=99.6

Q ss_pred             CCCccCcccccCccCCcEEEeecCCCceEecCCCCccccCCCccceeecccccccccccccccCCCcCccccEEeEecCC
Q 039808          149 HINSLSDFGVRSINGLKFCIISECPKIETVVDGKELTTVIFPSLENLSIHHLWNLTHICEGSVPNGSFARLRILSVHACP  228 (358)
Q Consensus       149 ~~~~l~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~  228 (358)
                      ++..++   .+-.++|++|+++++. +..++...   ...+++|++|++++. .++.+.  +..++.+++|++|+++++ 
T Consensus        18 ~l~~~p---~~~~~~l~~L~l~~n~-l~~~~~~~---~~~l~~L~~L~l~~n-~l~~~~--~~~~~~l~~L~~L~Ls~n-   86 (208)
T 2o6s_A           18 GRTSVP---TGIPAQTTYLDLETNS-LKSLPNGV---FDELTSLTQLYLGGN-KLQSLP--NGVFNKLTSLTYLNLSTN-   86 (208)
T ss_dssp             CCSSCC---SCCCTTCSEEECCSSC-CCCCCTTT---TTTCTTCSEEECCSS-CCCCCC--TTTTTTCTTCCEEECCSS-
T ss_pred             CccCCC---CCCCCCCcEEEcCCCc-cCcCChhh---hcccccCcEEECCCC-ccCccC--hhhcCCCCCcCEEECCCC-
Confidence            444444   3445699999999984 44443321   457899999999886 344432  112356899999999987 


Q ss_pred             CccccCchhhhccCCCccEEEEecCCccccccccccccccccccCCCcceeccccccccccccCC---CCCCccEEeeeC
Q 039808          229 KLKFVFSSFMIHFMSNLEDLTVEDCPAIEEIISEGEIIDSGCTALPRLKKLTLHYLPGLVTIWSS---AWPSLEYVSFYD  305 (358)
Q Consensus       229 ~l~~l~~~~~l~~l~~L~~L~i~~c~~l~~i~~~~~~~~~~~~~l~~L~~L~l~~c~~L~~~~~~---~~~~L~~L~i~~  305 (358)
                      .++.+++ ..+..+++|+.|+++++ .+..++.      ..+..+++|+.|+++++ .++.++..   .+++|++|++++
T Consensus        87 ~l~~~~~-~~~~~l~~L~~L~L~~N-~l~~~~~------~~~~~l~~L~~L~l~~N-~l~~~~~~~~~~l~~L~~L~l~~  157 (208)
T 2o6s_A           87 QLQSLPN-GVFDKLTQLKELALNTN-QLQSLPD------GVFDKLTQLKDLRLYQN-QLKSVPDGVFDRLTSLQYIWLHD  157 (208)
T ss_dssp             CCCCCCT-TTTTTCTTCCEEECCSS-CCCCCCT------TTTTTCTTCCEEECCSS-CCSCCCTTTTTTCTTCCEEECCS
T ss_pred             cCCccCH-hHhcCccCCCEEEcCCC-cCcccCH------hHhccCCcCCEEECCCC-ccceeCHHHhccCCCccEEEecC
Confidence            4665533 35678999999999986 4555441      23577899999999876 67777765   689999999999


Q ss_pred             CcCC
Q 039808          306 CPRL  309 (358)
Q Consensus       306 C~~L  309 (358)
                      ++-.
T Consensus       158 N~~~  161 (208)
T 2o6s_A          158 NPWD  161 (208)
T ss_dssp             CCBC
T ss_pred             CCee
Confidence            8543

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=98.71  E-value=7.1e-08  Score=84.86  Aligned_cols=151  Identities=19%  Similarity=0.169  Sum_probs=109.7

Q ss_pred             ccccccCCceEEeeCCC--CChHHHHhhccCccEEEeccCCCCCccCcccccCccCCcEEEeecCCCceEecCCCCcccc
Q 039808          110 AFDYNKQGKCLRFINGE--NIPDAVLQILACCTAFYLDNHLHINSLSDFGVRSINGLKFCIISECPKIETVVDGKELTTV  187 (358)
Q Consensus       110 ~l~~~~~L~~L~l~~~~--~~~~~~~~~l~~L~~L~l~~~~~~~~l~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~  187 (358)
                      .+..+.+++.|.+.++.  .++  ....+++|+.|++.++ .+..++.  +.++++|++|++++|. +..++..     .
T Consensus        36 ~~~~l~~L~~L~l~~n~i~~l~--~l~~l~~L~~L~L~~N-~i~~~~~--l~~l~~L~~L~L~~N~-l~~l~~~-----~  104 (263)
T 1xeu_A           36 SQKELSGVQNFNGDNSNIQSLA--GMQFFTNLKELHLSHN-QISDLSP--LKDLTKLEELSVNRNR-LKNLNGI-----P  104 (263)
T ss_dssp             CHHHHTTCSEEECTTSCCCCCT--TGGGCTTCCEEECCSS-CCCCCGG--GTTCSSCCEEECCSSC-CSCCTTC-----C
T ss_pred             chhhcCcCcEEECcCCCcccch--HHhhCCCCCEEECCCC-ccCCChh--hccCCCCCEEECCCCc-cCCcCcc-----c
Confidence            44556688888887764  333  3456899999999998 7777764  8899999999999984 4444322     2


Q ss_pred             CCCccceeecccccccccccccccCCCcCccccEEeEecCCCccccCchhhhccCCCccEEEEecCCccccccccccccc
Q 039808          188 IFPSLENLSIHHLWNLTHICEGSVPNGSFARLRILSVHACPKLKFVFSSFMIHFMSNLEDLTVEDCPAIEEIISEGEIID  267 (358)
Q Consensus       188 ~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~l~~l~~L~~L~i~~c~~l~~i~~~~~~~~  267 (358)
                      . ++|++|+++++. ++.+    ...+.+++|+.|+++++ +++.+   +.++.+++|+.|+++++ .+..+.       
T Consensus       105 ~-~~L~~L~L~~N~-l~~~----~~l~~l~~L~~L~Ls~N-~i~~~---~~l~~l~~L~~L~L~~N-~i~~~~-------  166 (263)
T 1xeu_A          105 S-ACLSRLFLDNNE-LRDT----DSLIHLKNLEILSIRNN-KLKSI---VMLGFLSKLEVLDLHGN-EITNTG-------  166 (263)
T ss_dssp             C-SSCCEEECCSSC-CSBS----GGGTTCTTCCEEECTTS-CCCBC---GGGGGCTTCCEEECTTS-CCCBCT-------
T ss_pred             c-CcccEEEccCCc-cCCC----hhhcCcccccEEECCCC-cCCCC---hHHccCCCCCEEECCCC-cCcchH-------
Confidence            2 899999998873 4443    13557899999999987 46665   24678999999999987 344332       


Q ss_pred             cccccCCCcceecccccccccccc
Q 039808          268 SGCTALPRLKKLTLHYLPGLVTIW  291 (358)
Q Consensus       268 ~~~~~l~~L~~L~l~~c~~L~~~~  291 (358)
                       .+..+++|+.|++++++ +...+
T Consensus       167 -~l~~l~~L~~L~l~~N~-~~~~~  188 (263)
T 1xeu_A          167 -GLTRLKKVNWIDLTGQK-CVNEP  188 (263)
T ss_dssp             -TSTTCCCCCEEEEEEEE-EECCC
T ss_pred             -HhccCCCCCEEeCCCCc-ccCCc
Confidence             47789999999998763 44443

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=98.69  E-value=5.4e-08  Score=89.70  Aligned_cols=128  Identities=14%  Similarity=0.109  Sum_probs=63.0

Q ss_pred             CCceEEeeCCC--CChHHHHh-hccCccEEEeccCCCCCccCcccccCccCCcEEEeecCCCceEecCCCCccccCCCcc
Q 039808          116 QGKCLRFINGE--NIPDAVLQ-ILACCTAFYLDNHLHINSLSDFGVRSINGLKFCIISECPKIETVVDGKELTTVIFPSL  192 (358)
Q Consensus       116 ~L~~L~l~~~~--~~~~~~~~-~l~~L~~L~l~~~~~~~~l~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L  192 (358)
                      .++.|.+.++.  .++..... .+++|+.|++.++ .+..++...+.++++|++|++++|. +..++...   ...+++|
T Consensus        40 ~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N-~i~~i~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~---~~~l~~L  114 (361)
T 2xot_A           40 YTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHN-HLNFISSEAFVPVPNLRYLDLSSNH-LHTLDEFL---FSDLQAL  114 (361)
T ss_dssp             TCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSS-CCCEECTTTTTTCTTCCEEECCSSC-CCEECTTT---TTTCTTC
T ss_pred             CCCEEECCCCCCCccChhhhhhcccccCEEECCCC-cCCccChhhccCCCCCCEEECCCCc-CCcCCHHH---hCCCcCC
Confidence            45566665543  22222222 4566666666666 5555554445666666666666653 33333221   3445666


Q ss_pred             ceeecccccccccccccccCCCcCccccEEeEecCCCccccCchhhh---ccCCCccEEEEecC
Q 039808          193 ENLSIHHLWNLTHICEGSVPNGSFARLRILSVHACPKLKFVFSSFMI---HFMSNLEDLTVEDC  253 (358)
Q Consensus       193 ~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~l---~~l~~L~~L~i~~c  253 (358)
                      +.|++++.. +..+.  +..+..+++|++|+++++ +++.+++ ..+   ..+++|+.|+++++
T Consensus       115 ~~L~L~~N~-i~~~~--~~~~~~l~~L~~L~L~~N-~l~~l~~-~~~~~~~~l~~L~~L~L~~N  173 (361)
T 2xot_A          115 EVLLLYNNH-IVVVD--RNAFEDMAQLQKLYLSQN-QISRFPV-ELIKDGNKLPKLMLLDLSSN  173 (361)
T ss_dssp             CEEECCSSC-CCEEC--TTTTTTCTTCCEEECCSS-CCCSCCG-GGTC----CTTCCEEECCSS
T ss_pred             CEEECCCCc-ccEEC--HHHhCCcccCCEEECCCC-cCCeeCH-HHhcCcccCCcCCEEECCCC
Confidence            666665543 22221  122344566666666654 3444322 222   34566666666654

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=98.67  E-value=2.5e-08  Score=79.61  Aligned_cols=34  Identities=21%  Similarity=0.219  Sum_probs=17.6

Q ss_pred             cCccEEEeccCCCCC--ccCcccccCccCCcEEEeecC
Q 039808          137 ACCTAFYLDNHLHIN--SLSDFGVRSINGLKFCIISEC  172 (358)
Q Consensus       137 ~~L~~L~l~~~~~~~--~l~~~~l~~l~~L~~L~l~~~  172 (358)
                      ++++.|++.++ .+.  .++. .++.+++|++|++++|
T Consensus        17 ~~l~~L~l~~n-~l~~~~~~~-~~~~l~~L~~L~l~~n   52 (149)
T 2je0_A           17 SDVKELVLDNS-RSNEGKLEG-LTDEFEELEFLSTINV   52 (149)
T ss_dssp             GGCSEEECTTC-BCBTTBCCS-CCTTCTTCCEEECTTS
T ss_pred             ccCeEEEccCC-cCChhHHHH-HHhhcCCCcEEECcCC
Confidence            44555555555 333  3333 3455566666666555

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=98.66  E-value=2e-07  Score=79.70  Aligned_cols=132  Identities=17%  Similarity=0.155  Sum_probs=87.0

Q ss_pred             cCccEEEeccCCCCCccCcccccCccCCcEEEeecCCCceEecCCCCccccCCCccceeecccccccccccccccCCCcC
Q 039808          137 ACCTAFYLDNHLHINSLSDFGVRSINGLKFCIISECPKIETVVDGKELTTVIFPSLENLSIHHLWNLTHICEGSVPNGSF  216 (358)
Q Consensus       137 ~~L~~L~l~~~~~~~~l~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~  216 (358)
                      ++++.|++.++ .+..++...+..+++|++|++++|. +..+....   +..+++|++|++++.. ++.++.  ..++.+
T Consensus        32 ~~l~~L~l~~n-~i~~i~~~~~~~l~~L~~L~Ls~N~-i~~~~~~~---~~~l~~L~~L~Ls~N~-l~~l~~--~~f~~l  103 (220)
T 2v9t_B           32 ETITEIRLEQN-TIKVIPPGAFSPYKKLRRIDLSNNQ-ISELAPDA---FQGLRSLNSLVLYGNK-ITELPK--SLFEGL  103 (220)
T ss_dssp             TTCCEEECCSS-CCCEECTTSSTTCTTCCEEECCSSC-CCEECTTT---TTTCSSCCEEECCSSC-CCCCCT--TTTTTC
T ss_pred             cCCCEEECCCC-cCCCcCHhHhhCCCCCCEEECCCCc-CCCcCHHH---hhCCcCCCEEECCCCc-CCccCH--hHccCC
Confidence            56777777777 6666665567788888888888774 44442221   5567888888887753 333321  123467


Q ss_pred             ccccEEeEecCCCccccCchhhhccCCCccEEEEecCCccccccccccccccccccCCCcceecccccc
Q 039808          217 ARLRILSVHACPKLKFVFSSFMIHFMSNLEDLTVEDCPAIEEIISEGEIIDSGCTALPRLKKLTLHYLP  285 (358)
Q Consensus       217 ~~L~~L~l~~c~~l~~l~~~~~l~~l~~L~~L~i~~c~~l~~i~~~~~~~~~~~~~l~~L~~L~l~~c~  285 (358)
                      ++|++|+++++ +++.+.+ ..+..+++|+.|+++++ .+..++.      ..+..+++|+.|++.+.+
T Consensus       104 ~~L~~L~L~~N-~l~~~~~-~~~~~l~~L~~L~L~~N-~l~~~~~------~~~~~l~~L~~L~L~~N~  163 (220)
T 2v9t_B          104 FSLQLLLLNAN-KINCLRV-DAFQDLHNLNLLSLYDN-KLQTIAK------GTFSPLRAIQTMHLAQNP  163 (220)
T ss_dssp             TTCCEEECCSS-CCCCCCT-TTTTTCTTCCEEECCSS-CCSCCCT------TTTTTCTTCCEEECCSSC
T ss_pred             CCCCEEECCCC-CCCEeCH-HHcCCCCCCCEEECCCC-cCCEECH------HHHhCCCCCCEEEeCCCC
Confidence            88888888886 4555544 34577888999998886 4444431      235668888888887653

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=98.64  E-value=7.2e-08  Score=76.88  Aligned_cols=129  Identities=21%  Similarity=0.234  Sum_probs=90.0

Q ss_pred             cCccCCcEEEeecCCCc-eEecCCCCccccCCCccceeecccccccccccccccCCCcCccccEEeEecCCCccccCchh
Q 039808          159 RSINGLKFCIISECPKI-ETVVDGKELTTVIFPSLENLSIHHLWNLTHICEGSVPNGSFARLRILSVHACPKLKFVFSSF  237 (358)
Q Consensus       159 ~~l~~L~~L~l~~~~~~-~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~  237 (358)
                      ...++|++|++++|... ..++..    ...+++|+.|+++++ .++.+    ...+.+++|++|++++|. ++... +.
T Consensus        14 ~~~~~l~~L~l~~n~l~~~~~~~~----~~~l~~L~~L~l~~n-~l~~~----~~~~~l~~L~~L~Ls~n~-i~~~~-~~   82 (149)
T 2je0_A           14 RTPSDVKELVLDNSRSNEGKLEGL----TDEFEELEFLSTINV-GLTSI----ANLPKLNKLKKLELSDNR-VSGGL-EV   82 (149)
T ss_dssp             CCGGGCSEEECTTCBCBTTBCCSC----CTTCTTCCEEECTTS-CCCCC----TTCCCCTTCCEEECCSSC-CCSCT-HH
T ss_pred             CCCccCeEEEccCCcCChhHHHHH----HhhcCCCcEEECcCC-CCCCc----hhhhcCCCCCEEECCCCc-ccchH-HH
Confidence            45578999999998543 244333    467889999999887 44443    235578899999998875 44432 34


Q ss_pred             hhccCCCccEEEEecCCccccccccccccccccccCCCcceeccccccccccccC---C---CCCCccEEeeeC
Q 039808          238 MIHFMSNLEDLTVEDCPAIEEIISEGEIIDSGCTALPRLKKLTLHYLPGLVTIWS---S---AWPSLEYVSFYD  305 (358)
Q Consensus       238 ~l~~l~~L~~L~i~~c~~l~~i~~~~~~~~~~~~~l~~L~~L~l~~c~~L~~~~~---~---~~~~L~~L~i~~  305 (358)
                      .++.+++|+.|+++++. +..++.     ...+..+++|+.|+++++ .++.++.   .   .+++|+.|++++
T Consensus        83 ~~~~l~~L~~L~ls~N~-i~~~~~-----~~~~~~l~~L~~L~l~~N-~l~~~~~~~~~~~~~l~~L~~L~l~d  149 (149)
T 2je0_A           83 LAEKCPNLTHLNLSGNK-IKDLST-----IEPLKKLENLKSLDLFNC-EVTNLNDYRENVFKLLPQLTYLDGYD  149 (149)
T ss_dssp             HHHHCTTCCEEECTTSC-CCSHHH-----HGGGGGCTTCCEEECTTC-GGGGSTTHHHHHHHHCTTCCEETTBC
T ss_pred             HhhhCCCCCEEECCCCc-CCChHH-----HHHHhhCCCCCEEeCcCC-cccchHHHHHHHHHHCCCcccccCCC
Confidence            56678999999998874 444320     024678889999999887 5777765   2   688888887753

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=98.63  E-value=2.8e-07  Score=89.90  Aligned_cols=159  Identities=18%  Similarity=0.173  Sum_probs=95.6

Q ss_pred             cCCceEEeeCCC--CChHHHHhhccCccEEEeccCCCCCccCcccccCccCCcEEEeecCCCceEecCCCCccccCCCcc
Q 039808          115 KQGKCLRFINGE--NIPDAVLQILACCTAFYLDNHLHINSLSDFGVRSINGLKFCIISECPKIETVVDGKELTTVIFPSL  192 (358)
Q Consensus       115 ~~L~~L~l~~~~--~~~~~~~~~l~~L~~L~l~~~~~~~~l~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L  192 (358)
                      ++++.|.+.++.  .++    ..+++|+.|++.++ .+..++.  +.+  +|++|++++|. +..++.       .+++|
T Consensus        80 ~~L~~L~Ls~N~l~~ip----~~l~~L~~L~Ls~N-~l~~ip~--l~~--~L~~L~Ls~N~-l~~lp~-------~l~~L  142 (571)
T 3cvr_A           80 PQITVLEITQNALISLP----ELPASLEYLDACDN-RLSTLPE--LPA--SLKHLDVDNNQ-LTMLPE-------LPALL  142 (571)
T ss_dssp             TTCSEEECCSSCCSCCC----CCCTTCCEEECCSS-CCSCCCC--CCT--TCCEEECCSSC-CSCCCC-------CCTTC
T ss_pred             CCCCEEECcCCCCcccc----cccCCCCEEEccCC-CCCCcch--hhc--CCCEEECCCCc-CCCCCC-------cCccc
Confidence            467777776654  333    34677777777777 5655654  333  77777777763 332321       45777


Q ss_pred             ceeecccccccccccccccCCCcCccccEEeEecCCCccccCchhhhccCCCccEEEEecCCcccccccccccccccccc
Q 039808          193 ENLSIHHLWNLTHICEGSVPNGSFARLRILSVHACPKLKFVFSSFMIHFMSNLEDLTVEDCPAIEEIISEGEIIDSGCTA  272 (358)
Q Consensus       193 ~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~l~~l~~L~~L~i~~c~~l~~i~~~~~~~~~~~~~  272 (358)
                      +.|+++++. ++.++.      .+++|++|++++|. ++.++.   +.  ++|+.|+++++ .+..++       . +  
T Consensus       143 ~~L~Ls~N~-l~~lp~------~l~~L~~L~Ls~N~-L~~lp~---l~--~~L~~L~Ls~N-~L~~lp-------~-~--  198 (571)
T 3cvr_A          143 EYINADNNQ-LTMLPE------LPTSLEVLSVRNNQ-LTFLPE---LP--ESLEALDVSTN-LLESLP-------A-V--  198 (571)
T ss_dssp             CEEECCSSC-CSCCCC------CCTTCCEEECCSSC-CSCCCC---CC--TTCCEEECCSS-CCSSCC-------C-C--
T ss_pred             cEEeCCCCc-cCcCCC------cCCCcCEEECCCCC-CCCcch---hh--CCCCEEECcCC-CCCchh-------h-H--
Confidence            777777653 333321      35677888877763 554422   22  77788887775 455554       1 1  


Q ss_pred             CCCc-------ceeccccccccccccCC--CCCCccEEeeeCCcCCCccCCC
Q 039808          273 LPRL-------KKLTLHYLPGLVTIWSS--AWPSLEYVSFYDCPRLKNIGLG  315 (358)
Q Consensus       273 l~~L-------~~L~l~~c~~L~~~~~~--~~~~L~~L~i~~C~~L~~lP~~  315 (358)
                      ..+|       +.|+++++ .++.+|..  .+++|+.|++++++--...|..
T Consensus       199 ~~~L~~~~~~L~~L~Ls~N-~l~~lp~~l~~l~~L~~L~L~~N~l~~~~p~~  249 (571)
T 3cvr_A          199 PVRNHHSEETEIFFRCREN-RITHIPENILSLDPTCTIILEDNPLSSRIRES  249 (571)
T ss_dssp             C--------CCEEEECCSS-CCCCCCGGGGGSCTTEEEECCSSSCCHHHHHH
T ss_pred             HHhhhcccccceEEecCCC-cceecCHHHhcCCCCCEEEeeCCcCCCcCHHH
Confidence            1145       77777665 67777665  6778888888777644444443

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=98.62  E-value=1.8e-07  Score=84.93  Aligned_cols=98  Identities=15%  Similarity=0.096  Sum_probs=58.0

Q ss_pred             CccccEEeEecCCCccccCchhhhccCCCccEEEEecCCccccccccccccccccccCCCcc-eeccccccccccccCC-
Q 039808          216 FARLRILSVHACPKLKFVFSSFMIHFMSNLEDLTVEDCPAIEEIISEGEIIDSGCTALPRLK-KLTLHYLPGLVTIWSS-  293 (358)
Q Consensus       216 ~~~L~~L~l~~c~~l~~l~~~~~l~~l~~L~~L~i~~c~~l~~i~~~~~~~~~~~~~l~~L~-~L~l~~c~~L~~~~~~-  293 (358)
                      +++|+.+++.++ +++.++. ..+.++++|+.+++.+.  ++.+..      ..+.++++|+ .+.+.+  .++.++.. 
T Consensus       225 ~~~L~~l~L~~n-~i~~I~~-~aF~~~~~L~~l~l~~n--i~~I~~------~aF~~~~~L~~~l~l~~--~l~~I~~~a  292 (329)
T 3sb4_A          225 MPNLVSLDISKT-NATTIPD-FTFAQKKYLLKIKLPHN--LKTIGQ------RVFSNCGRLAGTLELPA--SVTAIEFGA  292 (329)
T ss_dssp             CTTCCEEECTTB-CCCEECT-TTTTTCTTCCEEECCTT--CCEECT------TTTTTCTTCCEEEEECT--TCCEECTTT
T ss_pred             cCCCeEEECCCC-CcceecH-hhhhCCCCCCEEECCcc--cceehH------HHhhCChhccEEEEEcc--cceEEchhh
Confidence            456666666653 2454433 34566777777777652  554441      2455666676 777755  56666655 


Q ss_pred             --CCCCccEEeeeCCcCCCccCCC-CCCCCCeeEEE
Q 039808          294 --AWPSLEYVSFYDCPRLKNIGLG-SNLKHSVMEIK  326 (358)
Q Consensus       294 --~~~~L~~L~i~~C~~L~~lP~~-~~~~~~L~~~~  326 (358)
                        ++++|+.+++.+. +++.++.. ...+++|+.++
T Consensus       293 F~~c~~L~~l~l~~n-~i~~I~~~aF~~~~~L~~ly  327 (329)
T 3sb4_A          293 FMGCDNLRYVLATGD-KITTLGDELFGNGVPSKLIY  327 (329)
T ss_dssp             TTTCTTEEEEEECSS-CCCEECTTTTCTTCCCCEEE
T ss_pred             hhCCccCCEEEeCCC-ccCccchhhhcCCcchhhhc
Confidence              6777777776553 46666654 34566666664

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=98.62  E-value=1.5e-07  Score=91.85  Aligned_cols=175  Identities=17%  Similarity=0.153  Sum_probs=114.3

Q ss_pred             CCCceEEEEccCchhHHHHHhhhccccccccceEEEEEeCccccccccCCcccccccccCCceEEeeCCC--CChHHHHh
Q 039808           57 TELSSLCFHFPEIKLLELFLQRCVAWNAQCLTEFRIVVGHDIKNIVSRVPDAVAFDYNKQGKCLRFINGE--NIPDAVLQ  134 (358)
Q Consensus        57 ~~L~~L~~~~~~l~~l~~~~~~~~~~~~~~L~~l~i~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~--~~~~~~~~  134 (358)
                      .+|+.|++..+.+..+|..       .+++|+.+.+.   .+  .+..+|     ..+.+|+.|.+.++.  +++. +  
T Consensus        59 ~~L~~L~Ls~n~L~~lp~~-------l~~~L~~L~Ls---~N--~l~~ip-----~~l~~L~~L~Ls~N~l~~ip~-l--  118 (571)
T 3cvr_A           59 NQFSELQLNRLNLSSLPDN-------LPPQITVLEIT---QN--ALISLP-----ELPASLEYLDACDNRLSTLPE-L--  118 (571)
T ss_dssp             TTCSEEECCSSCCSCCCSC-------CCTTCSEEECC---SS--CCSCCC-----CCCTTCCEEECCSSCCSCCCC-C--
T ss_pred             CCccEEEeCCCCCCccCHh-------HcCCCCEEECc---CC--CCcccc-----cccCCCCEEEccCCCCCCcch-h--
Confidence            3888888877777666531       23567777652   11  123344     234688888888764  4444 2  


Q ss_pred             hccCccEEEeccCCCCCccCcccccCccCCcEEEeecCCCceEecCCCCccccCCCccceeecccccccccccccccCCC
Q 039808          135 ILACCTAFYLDNHLHINSLSDFGVRSINGLKFCIISECPKIETVVDGKELTTVIFPSLENLSIHHLWNLTHICEGSVPNG  214 (358)
Q Consensus       135 ~l~~L~~L~l~~~~~~~~l~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~  214 (358)
                       ..+|+.|++.++ .+..++.    .+++|+.|++++|. +..++.       .+++|++|+++++. ++.++.    ++
T Consensus       119 -~~~L~~L~Ls~N-~l~~lp~----~l~~L~~L~Ls~N~-l~~lp~-------~l~~L~~L~Ls~N~-L~~lp~----l~  179 (571)
T 3cvr_A          119 -PASLKHLDVDNN-QLTMLPE----LPALLEYINADNNQ-LTMLPE-------LPTSLEVLSVRNNQ-LTFLPE----LP  179 (571)
T ss_dssp             -CTTCCEEECCSS-CCSCCCC----CCTTCCEEECCSSC-CSCCCC-------CCTTCCEEECCSSC-CSCCCC----CC
T ss_pred             -hcCCCEEECCCC-cCCCCCC----cCccccEEeCCCCc-cCcCCC-------cCCCcCEEECCCCC-CCCcch----hh
Confidence             238999999888 6666663    67899999998874 333321       46789999998874 444422    22


Q ss_pred             cCccccEEeEecCCCccccCchhhhccCCCc-------cEEEEecCCccccccccccccccccccCCCcceeccccccc
Q 039808          215 SFARLRILSVHACPKLKFVFSSFMIHFMSNL-------EDLTVEDCPAIEEIISEGEIIDSGCTALPRLKKLTLHYLPG  286 (358)
Q Consensus       215 ~~~~L~~L~l~~c~~l~~l~~~~~l~~l~~L-------~~L~i~~c~~l~~i~~~~~~~~~~~~~l~~L~~L~l~~c~~  286 (358)
                        ++|+.|+++++ +++.++.   +..  +|       +.|+++++ .+..++       ..+..+++|+.|++++++-
T Consensus       180 --~~L~~L~Ls~N-~L~~lp~---~~~--~L~~~~~~L~~L~Ls~N-~l~~lp-------~~l~~l~~L~~L~L~~N~l  242 (571)
T 3cvr_A          180 --ESLEALDVSTN-LLESLPA---VPV--RNHHSEETEIFFRCREN-RITHIP-------ENILSLDPTCTIILEDNPL  242 (571)
T ss_dssp             --TTCCEEECCSS-CCSSCCC---CC----------CCEEEECCSS-CCCCCC-------GGGGGSCTTEEEECCSSSC
T ss_pred             --CCCCEEECcCC-CCCchhh---HHH--hhhcccccceEEecCCC-cceecC-------HHHhcCCCCCEEEeeCCcC
Confidence              78999999887 4665532   222  56       99999886 566666       3466689999999987743

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=98.60  E-value=3e-07  Score=79.05  Aligned_cols=132  Identities=19%  Similarity=0.158  Sum_probs=85.3

Q ss_pred             ccCccEEEeccCCCCCccCcccccCccCCcEEEeecCCCceEecCCCCccccCCCccceeecccccccccccccccCCCc
Q 039808          136 LACCTAFYLDNHLHINSLSDFGVRSINGLKFCIISECPKIETVVDGKELTTVIFPSLENLSIHHLWNLTHICEGSVPNGS  215 (358)
Q Consensus       136 l~~L~~L~l~~~~~~~~l~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~  215 (358)
                      .++++.|++.++ .+..+....+.++++|++|++++|. +..++...   ...+++|+.|++++. .++.+.  +..++.
T Consensus        39 ~~~L~~L~Ls~n-~i~~~~~~~~~~l~~L~~L~L~~N~-l~~i~~~~---~~~l~~L~~L~Ls~N-~l~~l~--~~~~~~  110 (229)
T 3e6j_A           39 PTNAQILYLHDN-QITKLEPGVFDSLINLKELYLGSNQ-LGALPVGV---FDSLTQLTVLDLGTN-QLTVLP--SAVFDR  110 (229)
T ss_dssp             CTTCSEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTT---TTTCTTCCEEECCSS-CCCCCC--TTTTTT
T ss_pred             CCCCCEEEcCCC-ccCccCHHHhhCccCCcEEECCCCC-CCCcChhh---cccCCCcCEEECCCC-cCCccC--hhHhCc
Confidence            367777777777 6666544457778888888887774 44443221   356778888888775 344332  112346


Q ss_pred             CccccEEeEecCCCccccCchhhhccCCCccEEEEecCCccccccccccccccccccCCCcceecccccc
Q 039808          216 FARLRILSVHACPKLKFVFSSFMIHFMSNLEDLTVEDCPAIEEIISEGEIIDSGCTALPRLKKLTLHYLP  285 (358)
Q Consensus       216 ~~~L~~L~l~~c~~l~~l~~~~~l~~l~~L~~L~i~~c~~l~~i~~~~~~~~~~~~~l~~L~~L~l~~c~  285 (358)
                      +++|++|+++++ +++.++  ..+..+++|+.|+++++ .+..++.      ..+..+++|+.|++.+.+
T Consensus       111 l~~L~~L~Ls~N-~l~~lp--~~~~~l~~L~~L~L~~N-~l~~~~~------~~~~~l~~L~~L~l~~N~  170 (229)
T 3e6j_A          111 LVHLKELFMCCN-KLTELP--RGIERLTHLTHLALDQN-QLKSIPH------GAFDRLSSLTHAYLFGNP  170 (229)
T ss_dssp             CTTCCEEECCSS-CCCSCC--TTGGGCTTCSEEECCSS-CCCCCCT------TTTTTCTTCCEEECTTSC
T ss_pred             chhhCeEeccCC-cccccC--cccccCCCCCEEECCCC-cCCccCH------HHHhCCCCCCEEEeeCCC
Confidence            788888888876 455542  23477888888888876 5555441      235677888888887654

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=98.59  E-value=3.7e-07  Score=82.87  Aligned_cols=103  Identities=17%  Similarity=0.020  Sum_probs=60.1

Q ss_pred             ccCCcEEEeecCCCceEecCCCCccccCCCccceeecccccccccccccccCCCcCcccc-EEeEecCCCccccCchhhh
Q 039808          161 INGLKFCIISECPKIETVVDGKELTTVIFPSLENLSIHHLWNLTHICEGSVPNGSFARLR-ILSVHACPKLKFVFSSFMI  239 (358)
Q Consensus       161 l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~-~L~l~~c~~l~~l~~~~~l  239 (358)
                      +++|+++++.++ .+..+++..   ...+++|+++.+.+  +++.+..  ..+..+++|+ .+.+.+  .++.+.+ ..+
T Consensus       225 ~~~L~~l~L~~n-~i~~I~~~a---F~~~~~L~~l~l~~--ni~~I~~--~aF~~~~~L~~~l~l~~--~l~~I~~-~aF  293 (329)
T 3sb4_A          225 MPNLVSLDISKT-NATTIPDFT---FAQKKYLLKIKLPH--NLKTIGQ--RVFSNCGRLAGTLELPA--SVTAIEF-GAF  293 (329)
T ss_dssp             CTTCCEEECTTB-CCCEECTTT---TTTCTTCCEEECCT--TCCEECT--TTTTTCTTCCEEEEECT--TCCEECT-TTT
T ss_pred             cCCCeEEECCCC-CcceecHhh---hhCCCCCCEEECCc--ccceehH--HHhhCChhccEEEEEcc--cceEEch-hhh
Confidence            567777777654 355554442   34456677776655  2444422  2233556677 777765  5665544 345


Q ss_pred             ccCCCccEEEEecCCccccccccccccccccccCCCcceecc
Q 039808          240 HFMSNLEDLTVEDCPAIEEIISEGEIIDSGCTALPRLKKLTL  281 (358)
Q Consensus       240 ~~l~~L~~L~i~~c~~l~~i~~~~~~~~~~~~~l~~L~~L~l  281 (358)
                      .++++|+.+++.. ..++.+..      ..+.++++|+.++.
T Consensus       294 ~~c~~L~~l~l~~-n~i~~I~~------~aF~~~~~L~~ly~  328 (329)
T 3sb4_A          294 MGCDNLRYVLATG-DKITTLGD------ELFGNGVPSKLIYK  328 (329)
T ss_dssp             TTCTTEEEEEECS-SCCCEECT------TTTCTTCCCCEEEC
T ss_pred             hCCccCCEEEeCC-CccCccch------hhhcCCcchhhhcc
Confidence            6788888888754 34555441      24666778877753

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=98.58  E-value=5.5e-07  Score=82.88  Aligned_cols=157  Identities=16%  Similarity=0.142  Sum_probs=96.4

Q ss_pred             ccCccEEEeccCCCCCccCccccc-CccCCcEEEeecCCCceEecCCCCccccCCCccceeecccccccccccccccCCC
Q 039808          136 LACCTAFYLDNHLHINSLSDFGVR-SINGLKFCIISECPKIETVVDGKELTTVIFPSLENLSIHHLWNLTHICEGSVPNG  214 (358)
Q Consensus       136 l~~L~~L~l~~~~~~~~l~~~~l~-~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~  214 (358)
                      ...++.|++.++ .+..++...+. ++++|++|++++| .+..++...   +..+++|++|++++.. ++.+.  +..+.
T Consensus        38 ~~~l~~L~Ls~N-~l~~l~~~~~~~~l~~L~~L~L~~N-~i~~i~~~~---~~~l~~L~~L~Ls~N~-l~~~~--~~~~~  109 (361)
T 2xot_A           38 PSYTALLDLSHN-NLSRLRAEWTPTRLTNLHSLLLSHN-HLNFISSEA---FVPVPNLRYLDLSSNH-LHTLD--EFLFS  109 (361)
T ss_dssp             CTTCSEEECCSS-CCCEECTTSSSSCCTTCCEEECCSS-CCCEECTTT---TTTCTTCCEEECCSSC-CCEEC--TTTTT
T ss_pred             CCCCCEEECCCC-CCCccChhhhhhcccccCEEECCCC-cCCccChhh---ccCCCCCCEEECCCCc-CCcCC--HHHhC
Confidence            456788888887 67777654555 7888888888877 444453322   4567788888887753 44432  11244


Q ss_pred             cCccccEEeEecCCCccccCchhhhccCCCccEEEEecCCccccccccccccccccccCCCcceeccccccccccccCC-
Q 039808          215 SFARLRILSVHACPKLKFVFSSFMIHFMSNLEDLTVEDCPAIEEIISEGEIIDSGCTALPRLKKLTLHYLPGLVTIWSS-  293 (358)
Q Consensus       215 ~~~~L~~L~l~~c~~l~~l~~~~~l~~l~~L~~L~i~~c~~l~~i~~~~~~~~~~~~~l~~L~~L~l~~c~~L~~~~~~-  293 (358)
                      .+++|++|+++++. +..+.+ ..+..+++|+.|+++++ .+..++...   -.....+++|+.|+++++ .++.++.. 
T Consensus       110 ~l~~L~~L~L~~N~-i~~~~~-~~~~~l~~L~~L~L~~N-~l~~l~~~~---~~~~~~l~~L~~L~L~~N-~l~~l~~~~  182 (361)
T 2xot_A          110 DLQALEVLLLYNNH-IVVVDR-NAFEDMAQLQKLYLSQN-QISRFPVEL---IKDGNKLPKLMLLDLSSN-KLKKLPLTD  182 (361)
T ss_dssp             TCTTCCEEECCSSC-CCEECT-TTTTTCTTCCEEECCSS-CCCSCCGGG---TC----CTTCCEEECCSS-CCCCCCHHH
T ss_pred             CCcCCCEEECCCCc-ccEECH-HHhCCcccCCEEECCCC-cCCeeCHHH---hcCcccCCcCCEEECCCC-CCCccCHHH
Confidence            67788888887763 554433 34567788888888775 444444100   001145778888888665 56666654 


Q ss_pred             --CCCC--ccEEeeeCCc
Q 039808          294 --AWPS--LEYVSFYDCP  307 (358)
Q Consensus       294 --~~~~--L~~L~i~~C~  307 (358)
                        .++.  ++.|++.++|
T Consensus       183 ~~~l~~~~l~~l~l~~N~  200 (361)
T 2xot_A          183 LQKLPAWVKNGLYLHNNP  200 (361)
T ss_dssp             HHHSCHHHHTTEECCSSC
T ss_pred             hhhccHhhcceEEecCCC
Confidence              4554  3667777754

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=98.55  E-value=4.6e-07  Score=77.38  Aligned_cols=132  Identities=14%  Similarity=0.115  Sum_probs=84.1

Q ss_pred             cCccEEEeccCCCCCccCc-ccccCccCCcEEEeecCCCceEecCCCCccccCCCccceeecccccccccccccccCCCc
Q 039808          137 ACCTAFYLDNHLHINSLSD-FGVRSINGLKFCIISECPKIETVVDGKELTTVIFPSLENLSIHHLWNLTHICEGSVPNGS  215 (358)
Q Consensus       137 ~~L~~L~l~~~~~~~~l~~-~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~  215 (358)
                      ..++.|++.++ .+..+.. ..+.++++|++|++++|. +..++...   +..+++|++|++++..- +.+.  +..++.
T Consensus        32 ~~~~~L~L~~N-~l~~~~~~~~~~~l~~L~~L~L~~N~-i~~i~~~~---~~~l~~L~~L~Ls~N~l-~~~~--~~~~~~  103 (220)
T 2v70_A           32 QYTAELRLNNN-EFTVLEATGIFKKLPQLRKINFSNNK-ITDIEEGA---FEGASGVNEILLTSNRL-ENVQ--HKMFKG  103 (220)
T ss_dssp             TTCSEEECCSS-CCCEECCCCCGGGCTTCCEEECCSSC-CCEECTTT---TTTCTTCCEEECCSSCC-CCCC--GGGGTT
T ss_pred             CCCCEEEcCCC-cCCccCchhhhccCCCCCEEECCCCc-CCEECHHH---hCCCCCCCEEECCCCcc-CccC--HhHhcC
Confidence            34567777777 6666532 246778888888887764 44443322   45677888888877543 3321  112446


Q ss_pred             CccccEEeEecCCCccccCchhhhccCCCccEEEEecCCccccccccccccccccccCCCcceecccccc
Q 039808          216 FARLRILSVHACPKLKFVFSSFMIHFMSNLEDLTVEDCPAIEEIISEGEIIDSGCTALPRLKKLTLHYLP  285 (358)
Q Consensus       216 ~~~L~~L~l~~c~~l~~l~~~~~l~~l~~L~~L~i~~c~~l~~i~~~~~~~~~~~~~l~~L~~L~l~~c~  285 (358)
                      +++|++|+++++ +++.+.+ ..+..+++|+.|+++++ .+..++      ...+..+++|+.|++++++
T Consensus       104 l~~L~~L~Ls~N-~l~~~~~-~~~~~l~~L~~L~L~~N-~l~~~~------~~~~~~l~~L~~L~L~~N~  164 (220)
T 2v70_A          104 LESLKTLMLRSN-RITCVGN-DSFIGLSSVRLLSLYDN-QITTVA------PGAFDTLHSLSTLNLLANP  164 (220)
T ss_dssp             CSSCCEEECTTS-CCCCBCT-TSSTTCTTCSEEECTTS-CCCCBC------TTTTTTCTTCCEEECCSCC
T ss_pred             CcCCCEEECCCC-cCCeECH-hHcCCCccCCEEECCCC-cCCEEC------HHHhcCCCCCCEEEecCcC
Confidence            788888888876 3555433 34567888888888876 444442      1346678888888887653

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=98.52  E-value=1.8e-07  Score=76.82  Aligned_cols=83  Identities=14%  Similarity=0.142  Sum_probs=36.0

Q ss_pred             cCccccEEeEecCCCccccCchhhhccCCCccEEEEecCCccccccccccccccccccCCCcceeccccccccccccCC-
Q 039808          215 SFARLRILSVHACPKLKFVFSSFMIHFMSNLEDLTVEDCPAIEEIISEGEIIDSGCTALPRLKKLTLHYLPGLVTIWSS-  293 (358)
Q Consensus       215 ~~~~L~~L~l~~c~~l~~l~~~~~l~~l~~L~~L~i~~c~~l~~i~~~~~~~~~~~~~l~~L~~L~l~~c~~L~~~~~~-  293 (358)
                      .+++|++|+++++ .++.+++ ..+..+++|+.|+++++ .++.++..     ..+..+++|+.|+++++ .+..++.. 
T Consensus        62 ~l~~L~~L~Ls~N-~l~~~~~-~~~~~l~~L~~L~L~~N-~i~~~~~~-----~~l~~l~~L~~L~l~~N-~i~~~~~~~  132 (176)
T 1a9n_A           62 LLRRLKTLLVNNN-RICRIGE-GLDQALPDLTELILTNN-SLVELGDL-----DPLASLKSLTYLCILRN-PVTNKKHYR  132 (176)
T ss_dssp             CCSSCCEEECCSS-CCCEECS-CHHHHCTTCCEEECCSC-CCCCGGGG-----GGGGGCTTCCEEECCSS-GGGGSTTHH
T ss_pred             cCCCCCEEECCCC-cccccCc-chhhcCCCCCEEECCCC-cCCcchhh-----HhhhcCCCCCEEEecCC-CCCCcHhHH
Confidence            3445555555544 2333321 22344555555555554 22333210     02344555555555544 23333331 


Q ss_pred             -----CCCCccEEeeeCC
Q 039808          294 -----AWPSLEYVSFYDC  306 (358)
Q Consensus       294 -----~~~~L~~L~i~~C  306 (358)
                           .+++|+.|+++++
T Consensus       133 ~~~~~~l~~L~~Ld~~~n  150 (176)
T 1a9n_A          133 LYVIYKVPQVRVLDFQKV  150 (176)
T ss_dssp             HHHHHHCTTCSEETTEEC
T ss_pred             HHHHHHCCccceeCCCcC
Confidence                 4555555555544

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=98.45  E-value=8.8e-09  Score=100.67  Aligned_cols=121  Identities=17%  Similarity=0.235  Sum_probs=86.2

Q ss_pred             CCceEEeeCCC--CChHHHHhhccCccEEEeccCCCCCccCcccccCccCCcEEEeecCCCceEecCCCCccccCCCccc
Q 039808          116 QGKCLRFINGE--NIPDAVLQILACCTAFYLDNHLHINSLSDFGVRSINGLKFCIISECPKIETVVDGKELTTVIFPSLE  193 (358)
Q Consensus       116 ~L~~L~l~~~~--~~~~~~~~~l~~L~~L~l~~~~~~~~l~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~  193 (358)
                      .++.|.+.++.  +++.  ...+++|+.|++.++ .+..++. .++++++|+.|++++|. +..++ .    +..+++|+
T Consensus       442 ~L~~L~Ls~n~l~~lp~--~~~l~~L~~L~Ls~N-~l~~lp~-~~~~l~~L~~L~Ls~N~-l~~lp-~----l~~l~~L~  511 (567)
T 1dce_A          442 DVRVLHLAHKDLTVLCH--LEQLLLVTHLDLSHN-RLRALPP-ALAALRCLEVLQASDNA-LENVD-G----VANLPRLQ  511 (567)
T ss_dssp             TCSEEECTTSCCSSCCC--GGGGTTCCEEECCSS-CCCCCCG-GGGGCTTCCEEECCSSC-CCCCG-G----GTTCSSCC
T ss_pred             CceEEEecCCCCCCCcC--ccccccCcEeecCcc-cccccch-hhhcCCCCCEEECCCCC-CCCCc-c----cCCCCCCc
Confidence            46777777663  4543  566889999999998 7778876 68999999999999884 44453 2    66789999


Q ss_pred             eeecccccccccccccccCCCcCccccEEeEecCCCccccCch--hhhccCCCccEEE
Q 039808          194 NLSIHHLWNLTHICEGSVPNGSFARLRILSVHACPKLKFVFSS--FMIHFMSNLEDLT  249 (358)
Q Consensus       194 ~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~--~~l~~l~~L~~L~  249 (358)
                      .|+++++. ++.+. .+...+.+++|+.|++++++ ++..++.  .+...+|+|+.|+
T Consensus       512 ~L~Ls~N~-l~~~~-~p~~l~~l~~L~~L~L~~N~-l~~~~~~~~~l~~~lp~L~~L~  566 (567)
T 1dce_A          512 ELLLCNNR-LQQSA-AIQPLVSCPRLVLLNLQGNS-LCQEEGIQERLAEMLPSVSSIL  566 (567)
T ss_dssp             EEECCSSC-CCSSS-TTGGGGGCTTCCEEECTTSG-GGGSSSCTTHHHHHCTTCSEEE
T ss_pred             EEECCCCC-CCCCC-CcHHHhcCCCCCEEEecCCc-CCCCccHHHHHHHHCcccCccC
Confidence            99998863 33321 02335678999999999874 5544331  2445689999885

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=98.44  E-value=6.8e-07  Score=73.38  Aligned_cols=65  Identities=12%  Similarity=0.046  Sum_probs=29.6

Q ss_pred             cCccccEEeEecCCCccccCchhhhccCCCccEEEEecCCccccccccccccccccccCCCcceeccccc
Q 039808          215 SFARLRILSVHACPKLKFVFSSFMIHFMSNLEDLTVEDCPAIEEIISEGEIIDSGCTALPRLKKLTLHYL  284 (358)
Q Consensus       215 ~~~~L~~L~l~~c~~l~~l~~~~~l~~l~~L~~L~i~~c~~l~~i~~~~~~~~~~~~~l~~L~~L~l~~c  284 (358)
                      .+++|++|+++++. ++.++....+..+++|+.|++++++ +..++..   ....+..+|+|+.|+++++
T Consensus        86 ~l~~L~~L~L~~N~-i~~~~~~~~l~~l~~L~~L~l~~N~-i~~~~~~---~~~~~~~l~~L~~Ld~~~n  150 (176)
T 1a9n_A           86 ALPDLTELILTNNS-LVELGDLDPLASLKSLTYLCILRNP-VTNKKHY---RLYVIYKVPQVRVLDFQKV  150 (176)
T ss_dssp             HCTTCCEEECCSCC-CCCGGGGGGGGGCTTCCEEECCSSG-GGGSTTH---HHHHHHHCTTCSEETTEEC
T ss_pred             cCCCCCEEECCCCc-CCcchhhHhhhcCCCCCEEEecCCC-CCCcHhH---HHHHHHHCCccceeCCCcC
Confidence            34555555555542 3333221234556666666666542 2222200   0001445666666666554

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=98.34  E-value=2.7e-05  Score=72.59  Aligned_cols=200  Identities=11%  Similarity=0.066  Sum_probs=131.7

Q ss_pred             ccccccCCceEEeeCC--CCChHHHHhhccCccEEEeccCCCCCccCcccccCccCCcEEEeecCCCceEecCCCCcccc
Q 039808          110 AFDYNKQGKCLRFING--ENIPDAVLQILACCTAFYLDNHLHINSLSDFGVRSINGLKFCIISECPKIETVVDGKELTTV  187 (358)
Q Consensus       110 ~l~~~~~L~~L~l~~~--~~~~~~~~~~l~~L~~L~l~~~~~~~~l~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~  187 (358)
                      .+..+.+|+.+.+.++  ..++...+. ..+++.+.+.+  .+..+...++.++++|+.+.+.+  ++..+....+   .
T Consensus       175 aF~~c~~L~~l~l~~n~l~~I~~~aF~-~~~L~~l~lp~--~l~~I~~~aF~~~~~L~~l~l~~--~l~~I~~~aF---~  246 (401)
T 4fdw_A          175 IFYYCYNLKKADLSKTKITKLPASTFV-YAGIEEVLLPV--TLKEIGSQAFLKTSQLKTIEIPE--NVSTIGQEAF---R  246 (401)
T ss_dssp             TTTTCTTCCEEECTTSCCSEECTTTTT-TCCCSEEECCT--TCCEECTTTTTTCTTCCCEECCT--TCCEECTTTT---T
T ss_pred             HhhCcccCCeeecCCCcceEechhhEe-ecccCEEEeCC--chheehhhHhhCCCCCCEEecCC--CccCcccccc---c
Confidence            4555667777777643  234443333 36788888863  57777777889999999999976  4666644432   1


Q ss_pred             CCCccceeecccccccccccccccCCCcCccccEEeEecCCC----ccccCchhhhccCCCccEEEEecCCccccccccc
Q 039808          188 IFPSLENLSIHHLWNLTHICEGSVPNGSFARLRILSVHACPK----LKFVFSSFMIHFMSNLEDLTVEDCPAIEEIISEG  263 (358)
Q Consensus       188 ~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~----l~~l~~~~~l~~l~~L~~L~i~~c~~l~~i~~~~  263 (358)
                      . .+|+++.+.+  +++.+..  ..+..+++|+.+.+.+...    ...+. ...+.++++|+.+.+.+  .++.+.   
T Consensus       247 ~-~~L~~i~lp~--~i~~I~~--~aF~~c~~L~~l~l~~~~~~~~~~~~I~-~~aF~~c~~L~~l~l~~--~i~~I~---  315 (401)
T 4fdw_A          247 E-SGITTVKLPN--GVTNIAS--RAFYYCPELAEVTTYGSTFNDDPEAMIH-PYCLEGCPKLARFEIPE--SIRILG---  315 (401)
T ss_dssp             T-CCCSEEEEET--TCCEECT--TTTTTCTTCCEEEEESSCCCCCTTCEEC-TTTTTTCTTCCEECCCT--TCCEEC---
T ss_pred             c-CCccEEEeCC--CccEECh--hHhhCCCCCCEEEeCCccccCCcccEEC-HHHhhCCccCCeEEeCC--ceEEEh---
Confidence            2 6788888833  4444422  2344678999999976421    11232 24567899999999974  465554   


Q ss_pred             cccccccccCCCcceeccccccccccccCC---CCCCccEEeeeCCcCCCccCCCC-CCC-CCeeEEEecccccccc
Q 039808          264 EIIDSGCTALPRLKKLTLHYLPGLVTIWSS---AWPSLEYVSFYDCPRLKNIGLGS-NLK-HSVMEIKAEKSWWDDL  335 (358)
Q Consensus       264 ~~~~~~~~~l~~L~~L~l~~c~~L~~~~~~---~~~~L~~L~i~~C~~L~~lP~~~-~~~-~~L~~~~~~~~~~~~l  335 (358)
                         ...+.++++|+.+.+..  +++.+...   ++ +|+.+++.+. .+..++.+. ..+ ..+..++.+....+..
T Consensus       316 ---~~aF~~c~~L~~l~lp~--~l~~I~~~aF~~~-~L~~l~l~~n-~~~~l~~~~F~~~~~~l~~l~vp~~~~~~y  385 (401)
T 4fdw_A          316 ---QGLLGGNRKVTQLTIPA--NVTQINFSAFNNT-GIKEVKVEGT-TPPQVFEKVWYGFPDDITVIRVPAESVEKY  385 (401)
T ss_dssp             ---TTTTTTCCSCCEEEECT--TCCEECTTSSSSS-CCCEEEECCS-SCCBCCCSSCCCSCTTCCEEEECGGGHHHH
T ss_pred             ---hhhhcCCCCccEEEECc--cccEEcHHhCCCC-CCCEEEEcCC-CCcccccccccCCCCCccEEEeCHHHHHHh
Confidence               13566778999999954  57777766   67 9999999986 466665553 334 4778888776555544

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=98.26  E-value=1.6e-06  Score=72.45  Aligned_cols=53  Identities=17%  Similarity=0.154  Sum_probs=31.9

Q ss_pred             eeccCCC---CccCCchhhcCccccEEEeeecCCCcceecccchhhhhhcCCCCCceEEEEccCchh
Q 039808            8 EYVKMPP---QLISSGIISRLHALKTLSIVVYPGDKRWYKDVKSVVLEVCNLTELSSLCFHFPEIKL   71 (358)
Q Consensus         8 ~~l~L~~---~~ip~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~~~~~~l~~   71 (358)
                      ++++++.   +.+|.++   ..+|++|++++ +.+.       .++..+.++++|+.|++..+.++.
T Consensus        13 ~~l~~~~~~l~~ip~~~---~~~l~~L~L~~-n~i~-------~ip~~~~~l~~L~~L~Ls~N~i~~   68 (193)
T 2wfh_A           13 TVVRCSNKGLKVLPKGI---PRDVTELYLDG-NQFT-------LVPKELSNYKHLTLIDLSNNRIST   68 (193)
T ss_dssp             TEEECTTSCCSSCCSCC---CTTCCEEECCS-SCCC-------SCCGGGGGCTTCCEEECCSSCCCC
T ss_pred             CEEEcCCCCCCcCCCCC---CCCCCEEECCC-CcCc-------hhHHHhhcccCCCEEECCCCcCCE
Confidence            4555554   4567654   35788888887 3332       233466777777777775555543

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=98.24  E-value=7e-06  Score=67.20  Aligned_cols=83  Identities=17%  Similarity=0.200  Sum_probs=45.6

Q ss_pred             cCccccEEeEecCCCccccCchhhhccCCCccEEEEecCCccccccccccccccccccCCCcceeccccccccccccCC-
Q 039808          215 SFARLRILSVHACPKLKFVFSSFMIHFMSNLEDLTVEDCPAIEEIISEGEIIDSGCTALPRLKKLTLHYLPGLVTIWSS-  293 (358)
Q Consensus       215 ~~~~L~~L~l~~c~~l~~l~~~~~l~~l~~L~~L~i~~c~~l~~i~~~~~~~~~~~~~l~~L~~L~l~~c~~L~~~~~~-  293 (358)
                      .+++|++|++.++ .++.+++ ..+..+++|+.|+++++ .+..++.      ..+..+++|+.|+++++ .++.++.. 
T Consensus        50 ~l~~L~~L~l~~n-~l~~~~~-~~~~~l~~L~~L~l~~N-~l~~~~~------~~~~~l~~L~~L~l~~N-~l~~~~~~~  119 (177)
T 2o6r_A           50 KLTQLTKLSLSQN-QIQSLPD-GVFDKLTKLTILYLHEN-KLQSLPN------GVFDKLTQLKELALDTN-QLKSVPDGI  119 (177)
T ss_dssp             TCTTCSEEECCSS-CCCCCCT-TTTTTCTTCCEEECCSS-CCCCCCT------TTTTTCTTCCEEECCSS-CCSCCCTTT
T ss_pred             CcccccEEECCCC-cceEeCh-hHccCCCccCEEECCCC-CccccCH------HHhhCCcccCEEECcCC-cceEeCHHH
Confidence            4455666666554 3443322 23455666666666664 3333330      12345666777777555 55655554 


Q ss_pred             --CCCCccEEeeeCCc
Q 039808          294 --AWPSLEYVSFYDCP  307 (358)
Q Consensus       294 --~~~~L~~L~i~~C~  307 (358)
                        .+++|++|++++++
T Consensus       120 ~~~l~~L~~L~l~~N~  135 (177)
T 2o6r_A          120 FDRLTSLQKIWLHTNP  135 (177)
T ss_dssp             TTTCTTCCEEECCSSC
T ss_pred             hcCCcccCEEEecCCC
Confidence              46677777777664

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=98.23  E-value=7.3e-06  Score=68.19  Aligned_cols=13  Identities=8%  Similarity=-0.064  Sum_probs=5.1

Q ss_pred             cCccCCcEEEeec
Q 039808          159 RSINGLKFCIISE  171 (358)
Q Consensus       159 ~~l~~L~~L~l~~  171 (358)
                      +.+++|++|++++
T Consensus        51 ~~l~~L~~L~Ls~   63 (192)
T 1w8a_A           51 GRLPHLVKLELKR   63 (192)
T ss_dssp             GGCTTCCEEECCS
T ss_pred             ccCCCCCEEECCC
Confidence            3333444444433

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=98.23  E-value=6.6e-07  Score=73.07  Aligned_cols=90  Identities=11%  Similarity=0.154  Sum_probs=52.2

Q ss_pred             ccceeecccccccccccccccCCCcCccccEEeEecCCCccccCchhhhccC----CCccEEEEecCCcccccccccccc
Q 039808          191 SLENLSIHHLWNLTHICEGSVPNGSFARLRILSVHACPKLKFVFSSFMIHFM----SNLEDLTVEDCPAIEEIISEGEII  266 (358)
Q Consensus       191 ~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~l~~l----~~L~~L~i~~c~~l~~i~~~~~~~  266 (358)
                      .|++|++++|. ++......  ...+++|++|++++|..+++..... +..+    ++|++|+|++|..+.+...     
T Consensus        62 ~L~~LDLs~~~-Itd~GL~~--L~~~~~L~~L~L~~C~~ItD~gL~~-L~~~~~~~~~L~~L~Ls~C~~ITD~Gl-----  132 (176)
T 3e4g_A           62 KIQAIDATDSC-IMSIGFDH--MEGLQYVEKIRLCKCHYIEDGCLER-LSQLENLQKSMLEMEIISCGNVTDKGI-----  132 (176)
T ss_dssp             CEEEEEEESCC-CCGGGGGG--GTTCSCCCEEEEESCTTCCHHHHHH-HHTCHHHHHHCCEEEEESCTTCCHHHH-----
T ss_pred             eEeEEeCcCCC-ccHHHHHH--hcCCCCCCEEEeCCCCccCHHHHHH-HHhcccccCCCCEEEcCCCCcCCHHHH-----
Confidence            57777777775 44332222  2356777777777777777642222 2222    3677777777776654210     


Q ss_pred             ccccccCCCcceeccccccccccc
Q 039808          267 DSGCTALPRLKKLTLHYLPGLVTI  290 (358)
Q Consensus       267 ~~~~~~l~~L~~L~l~~c~~L~~~  290 (358)
                       ..+..+++|+.|++++|+.+++.
T Consensus       133 -~~L~~~~~L~~L~L~~c~~Itd~  155 (176)
T 3e4g_A          133 -IALHHFRNLKYLFLSDLPGVKEK  155 (176)
T ss_dssp             -HHGGGCTTCCEEEEESCTTCCCH
T ss_pred             -HHHhcCCCCCEEECCCCCCCCch
Confidence             12345667777777777666653

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=98.21  E-value=7.4e-06  Score=68.27  Aligned_cols=36  Identities=17%  Similarity=0.158  Sum_probs=16.9

Q ss_pred             cccCCCcceeccccccccccccCC---CCCCccEEeeeCC
Q 039808          270 CTALPRLKKLTLHYLPGLVTIWSS---AWPSLEYVSFYDC  306 (358)
Q Consensus       270 ~~~l~~L~~L~l~~c~~L~~~~~~---~~~~L~~L~i~~C  306 (358)
                      +..+++|+.|+++++ .++.++..   .+++|+.|++.++
T Consensus        98 f~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~N  136 (193)
T 2wfh_A           98 FDGLKSLRLLSLHGN-DISVVPEGAFNDLSALSHLAIGAN  136 (193)
T ss_dssp             TTTCTTCCEEECCSS-CCCBCCTTTTTTCTTCCEEECCSS
T ss_pred             hCCCCCCCEEECCCC-CCCeeChhhhhcCccccEEEeCCC
Confidence            344455555555443 34444443   3455555555543

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=98.19  E-value=7.5e-07  Score=72.72  Aligned_cols=91  Identities=12%  Similarity=0.089  Sum_probs=56.9

Q ss_pred             CCcEEEeecCCCceEecCCCCccccCCCccceeecccccccccccccccCCC--cCccccEEeEecCCCccccCchhhhc
Q 039808          163 GLKFCIISECPKIETVVDGKELTTVIFPSLENLSIHHLWNLTHICEGSVPNG--SFARLRILSVHACPKLKFVFSSFMIH  240 (358)
Q Consensus       163 ~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~--~~~~L~~L~l~~c~~l~~l~~~~~l~  240 (358)
                      .|++|++++|. +.   +.....+..+++|++|++++|..++..........  ..++|++|++++|+++++.+.. .+.
T Consensus        62 ~L~~LDLs~~~-It---d~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~-~L~  136 (176)
T 3e4g_A           62 KIQAIDATDSC-IM---SIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGII-ALH  136 (176)
T ss_dssp             CEEEEEEESCC-CC---GGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHH-HGG
T ss_pred             eEeEEeCcCCC-cc---HHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHH-HHh
Confidence            57777777764 22   22112244567777777777766655322221111  1247899999999888875443 345


Q ss_pred             cCCCccEEEEecCCcccc
Q 039808          241 FMSNLEDLTVEDCPAIEE  258 (358)
Q Consensus       241 ~l~~L~~L~i~~c~~l~~  258 (358)
                      .+++|+.|+|++|+.+..
T Consensus       137 ~~~~L~~L~L~~c~~Itd  154 (176)
T 3e4g_A          137 HFRNLKYLFLSDLPGVKE  154 (176)
T ss_dssp             GCTTCCEEEEESCTTCCC
T ss_pred             cCCCCCEEECCCCCCCCc
Confidence            788999999999988765

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=98.13  E-value=4.5e-06  Score=81.49  Aligned_cols=26  Identities=12%  Similarity=0.028  Sum_probs=19.2

Q ss_pred             hcCCCCCceEEEEccCchhHHHHHhh
Q 039808           53 VCNLTELSSLCFHFPEIKLLELFLQR   78 (358)
Q Consensus        53 l~~l~~L~~L~~~~~~l~~l~~~~~~   78 (358)
                      +..+++|+.|+++.+.++.+|..++.
T Consensus       345 ~~~~~~L~~L~Ls~n~L~~Lp~~i~~  370 (567)
T 1dce_A          345 SATDEQLFRCELSVEKSTVLQSELES  370 (567)
T ss_dssp             CSTTTTSSSCCCCHHHHHHHHHHHHH
T ss_pred             cccCccceeccCChhhHHhhHHHHHH
Confidence            35677888888877778888877664

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=98.11  E-value=2e-06  Score=86.52  Aligned_cols=139  Identities=13%  Similarity=0.000  Sum_probs=88.1

Q ss_pred             cccCccCCcEEEeecCCCceEecCCCCccccCCCccceeecccccccccccccccCCCcCccccEEeEecCCCccccCch
Q 039808          157 GVRSINGLKFCIISECPKIETVVDGKELTTVIFPSLENLSIHHLWNLTHICEGSVPNGSFARLRILSVHACPKLKFVFSS  236 (358)
Q Consensus       157 ~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~  236 (358)
                      .+..+++|+.|++++|. +..++..    ...+++|++|.++++. ++.+   +..++.+++|++|+++++. ++.+ | 
T Consensus       219 ~~~~l~~L~~L~Ls~n~-l~~l~~~----~~~l~~L~~L~Ls~N~-l~~l---p~~~~~l~~L~~L~Ls~N~-l~~l-p-  286 (727)
T 4b8c_D          219 SKYDDQLWHALDLSNLQ-IFNISAN----IFKYDFLTRLYLNGNS-LTEL---PAEIKNLSNLRVLDLSHNR-LTSL-P-  286 (727)
T ss_dssp             ---CCCCCCEEECTTSC-CSCCCGG----GGGCCSCSCCBCTTSC-CSCC---CGGGGGGTTCCEEECTTSC-CSSC-C-
T ss_pred             hhccCCCCcEEECCCCC-CCCCChh----hcCCCCCCEEEeeCCc-Cccc---ChhhhCCCCCCEEeCcCCc-CCcc-C-
Confidence            57788899999998875 3445333    4467889999988863 3444   3335678889999998874 5554 3 


Q ss_pred             hhhccCCCccEEEEecCCccccccccccccccccccCCCcceeccccccccccccCC---CC-CCccEEeeeCCcCCCcc
Q 039808          237 FMIHFMSNLEDLTVEDCPAIEEIISEGEIIDSGCTALPRLKKLTLHYLPGLVTIWSS---AW-PSLEYVSFYDCPRLKNI  312 (358)
Q Consensus       237 ~~l~~l~~L~~L~i~~c~~l~~i~~~~~~~~~~~~~l~~L~~L~l~~c~~L~~~~~~---~~-~~L~~L~i~~C~~L~~l  312 (358)
                      ..++.+++|+.|+++++ .+..++       ..++.+++|+.|++++++ ++..+..   .. ..+..++++++..-..+
T Consensus       287 ~~~~~l~~L~~L~L~~N-~l~~lp-------~~~~~l~~L~~L~L~~N~-l~~~~p~~~~~~~~~~~~l~l~~N~l~~~~  357 (727)
T 4b8c_D          287 AELGSCFQLKYFYFFDN-MVTTLP-------WEFGNLCNLQFLGVEGNP-LEKQFLKILTEKSVTGLIFYLRDNRPEIPL  357 (727)
T ss_dssp             SSGGGGTTCSEEECCSS-CCCCCC-------SSTTSCTTCCCEECTTSC-CCSHHHHHHHHHHHHHHHHHHHHCCCCCCC
T ss_pred             hhhcCCCCCCEEECCCC-CCCccC-------hhhhcCCCccEEeCCCCc-cCCCChHHHhhcchhhhHHhhccCcccCcC
Confidence            23578889999999887 556666       457788889999997763 4433322   11 11223456665544455


Q ss_pred             CCCC
Q 039808          313 GLGS  316 (358)
Q Consensus       313 P~~~  316 (358)
                      |..+
T Consensus       358 p~~l  361 (727)
T 4b8c_D          358 PHER  361 (727)
T ss_dssp             CCC-
T ss_pred             cccc
Confidence            5544

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=98.10  E-value=1.4e-05  Score=65.42  Aligned_cols=107  Identities=18%  Similarity=0.188  Sum_probs=47.9

Q ss_pred             cCccEEEeccCCCCCccCcccccCccCCcEEEeecCCCceEecCCCCccccCCCccceeecccccccccccccccCCCcC
Q 039808          137 ACCTAFYLDNHLHINSLSDFGVRSINGLKFCIISECPKIETVVDGKELTTVIFPSLENLSIHHLWNLTHICEGSVPNGSF  216 (358)
Q Consensus       137 ~~L~~L~l~~~~~~~~l~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~  216 (358)
                      ++++.|++.++ .+..++...++.+++|++|++++|. +..++...   ...+++|++|++++.. ++.+.  +...+.+
T Consensus        28 ~~l~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~---~~~l~~L~~L~l~~N~-l~~~~--~~~~~~l   99 (177)
T 2o6r_A           28 SSATRLELESN-KLQSLPHGVFDKLTQLTKLSLSQNQ-IQSLPDGV---FDKLTKLTILYLHENK-LQSLP--NGVFDKL   99 (177)
T ss_dssp             TTCSEEECCSS-CCCCCCTTTTTTCTTCSEEECCSSC-CCCCCTTT---TTTCTTCCEEECCSSC-CCCCC--TTTTTTC
T ss_pred             CCCcEEEeCCC-cccEeCHHHhcCcccccEEECCCCc-ceEeChhH---ccCCCccCEEECCCCC-ccccC--HHHhhCC
Confidence            45566666555 4444443335566666666666552 33222211   2344555555555432 22211  1112334


Q ss_pred             ccccEEeEecCCCccccCchhhhccCCCccEEEEecC
Q 039808          217 ARLRILSVHACPKLKFVFSSFMIHFMSNLEDLTVEDC  253 (358)
Q Consensus       217 ~~L~~L~l~~c~~l~~l~~~~~l~~l~~L~~L~i~~c  253 (358)
                      ++|++|+++++ .++.+++ ..+..+++|+.|+++++
T Consensus       100 ~~L~~L~l~~N-~l~~~~~-~~~~~l~~L~~L~l~~N  134 (177)
T 2o6r_A          100 TQLKELALDTN-QLKSVPD-GIFDRLTSLQKIWLHTN  134 (177)
T ss_dssp             TTCCEEECCSS-CCSCCCT-TTTTTCTTCCEEECCSS
T ss_pred             cccCEEECcCC-cceEeCH-HHhcCCcccCEEEecCC
Confidence            55555555544 3333322 22344555555555544

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=98.05  E-value=2.6e-05  Score=64.76  Aligned_cols=124  Identities=17%  Similarity=0.123  Sum_probs=85.0

Q ss_pred             cEEEeecCCCceEecCCCCccccCCCccceeecccccccccccccccCCCcCccccEEeEecCCCccccCchhhhccCCC
Q 039808          165 KFCIISECPKIETVVDGKELTTVIFPSLENLSIHHLWNLTHICEGSVPNGSFARLRILSVHACPKLKFVFSSFMIHFMSN  244 (358)
Q Consensus       165 ~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~l~~l~~  244 (358)
                      +.++++++ +++.++..      .+++|++|.+++.. ++.+... ..++.+++|++|+++++ .++.+.+ ..+..+++
T Consensus        11 ~~l~~s~~-~l~~ip~~------~~~~l~~L~l~~n~-i~~~~~~-~~~~~l~~L~~L~Ls~N-~l~~~~~-~~~~~l~~   79 (192)
T 1w8a_A           11 TTVDCTGR-GLKEIPRD------IPLHTTELLLNDNE-LGRISSD-GLFGRLPHLVKLELKRN-QLTGIEP-NAFEGASH   79 (192)
T ss_dssp             TEEECTTS-CCSSCCSC------CCTTCSEEECCSCC-CCSBCCS-CSGGGCTTCCEEECCSS-CCCCBCT-TTTTTCTT
T ss_pred             CEEEcCCC-CcCcCccC------CCCCCCEEECCCCc-CCccCCc-cccccCCCCCEEECCCC-CCCCcCH-hHcCCccc
Confidence            67777765 44555432      34589999998863 4443211 11457889999999886 4665544 35678899


Q ss_pred             ccEEEEecCCccccccccccccccccccCCCcceeccccccccccccCC---CCCCccEEeeeCCc
Q 039808          245 LEDLTVEDCPAIEEIISEGEIIDSGCTALPRLKKLTLHYLPGLVTIWSS---AWPSLEYVSFYDCP  307 (358)
Q Consensus       245 L~~L~i~~c~~l~~i~~~~~~~~~~~~~l~~L~~L~l~~c~~L~~~~~~---~~~~L~~L~i~~C~  307 (358)
                      |+.|+++++ .+..++.      ..+..+++|+.|+++++ .++.+...   .+++|++|++++++
T Consensus        80 L~~L~Ls~N-~l~~~~~------~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~N~  137 (192)
T 1w8a_A           80 IQELQLGEN-KIKEISN------KMFLGLHQLKTLNLYDN-QISCVMPGSFEHLNSLTSLNLASNP  137 (192)
T ss_dssp             CCEEECCSC-CCCEECS------SSSTTCTTCCEEECCSS-CCCEECTTSSTTCTTCCEEECTTCC
T ss_pred             CCEEECCCC-cCCccCH------HHhcCCCCCCEEECCCC-cCCeeCHHHhhcCCCCCEEEeCCCC
Confidence            999999886 4544441      23667899999999776 67666444   78899999998875

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=98.04  E-value=2.5e-07  Score=77.61  Aligned_cols=109  Identities=18%  Similarity=0.269  Sum_probs=66.2

Q ss_pred             HHhhccCccEEEeccCCCCCccCcccccCccCCcEEEeecCCCceEecCCCCccccCCCccceeeccccccccccccccc
Q 039808          132 VLQILACCTAFYLDNHLHINSLSDFGVRSINGLKFCIISECPKIETVVDGKELTTVIFPSLENLSIHHLWNLTHICEGSV  211 (358)
Q Consensus       132 ~~~~l~~L~~L~l~~~~~~~~l~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~  211 (358)
                      ....+++++.|++.++ .+..++  .+.++++|++|++++|. +..++..    ...+++|++|+++++ .++.++    
T Consensus        43 ~~~~l~~L~~L~ls~n-~l~~l~--~~~~l~~L~~L~l~~n~-l~~l~~~----~~~~~~L~~L~L~~N-~l~~l~----  109 (198)
T 1ds9_A           43 TLSTLKACKHLALSTN-NIEKIS--SLSGMENLRILSLGRNL-IKKIENL----DAVADTLEELWISYN-QIASLS----  109 (198)
T ss_dssp             HHHHTTTCSEEECSEE-EESCCC--CHHHHTTCCEEEEEEEE-ECSCSSH----HHHHHHCSEEEEEEE-ECCCHH----
T ss_pred             HHhcCCCCCEEECCCC-CCcccc--ccccCCCCCEEECCCCC-cccccch----hhcCCcCCEEECcCC-cCCcCC----
Confidence            3455778888888777 666665  47778888888888773 3333211    334567777777765 333332    


Q ss_pred             CCCcCccccEEeEecCCCccccCchhhhccCCCccEEEEecCC
Q 039808          212 PNGSFARLRILSVHACPKLKFVFSSFMIHFMSNLEDLTVEDCP  254 (358)
Q Consensus       212 ~~~~~~~L~~L~l~~c~~l~~l~~~~~l~~l~~L~~L~i~~c~  254 (358)
                      ..+.+++|++|+++++. ++.+.....+..+++|+.|+++++.
T Consensus       110 ~~~~l~~L~~L~l~~N~-i~~~~~~~~l~~l~~L~~L~l~~N~  151 (198)
T 1ds9_A          110 GIEKLVNLRVLYMSNNK-ITNWGEIDKLAALDKLEDLLLAGNP  151 (198)
T ss_dssp             HHHHHHHSSEEEESEEE-CCCHHHHHHHTTTTTCSEEEECSCH
T ss_pred             ccccCCCCCEEECCCCc-CCchhHHHHHhcCCCCCEEEecCCc
Confidence            23456677777777653 4433221345667777777777663

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=97.90  E-value=1.8e-05  Score=72.67  Aligned_cols=159  Identities=14%  Similarity=0.121  Sum_probs=84.8

Q ss_pred             hccCccEEEeccCCC----C-----CccCcccccCccCCcEEEeecCCCceEecCCCCccccCCCccceeeccccccccc
Q 039808          135 ILACCTAFYLDNHLH----I-----NSLSDFGVRSINGLKFCIISECPKIETVVDGKELTTVIFPSLENLSIHHLWNLTH  205 (358)
Q Consensus       135 ~l~~L~~L~l~~~~~----~-----~~l~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~  205 (358)
                      .+++|+.|.+.....    +     ..+.. .+..+++|++|.|++|..+. +. .    . ..++|++|.+..+. +..
T Consensus       137 ~l~~L~~L~l~~~~~e~~~is~~~~~~L~~-ll~~~P~L~~L~L~g~~~l~-l~-~----~-~~~~L~~L~L~~~~-l~~  207 (362)
T 2ra8_A          137 KFAHFEGLFWGDIDFEEQEISWIEQVDLSP-VLDAMPLLNNLKIKGTNNLS-IG-K----K-PRPNLKSLEIISGG-LPD  207 (362)
T ss_dssp             HHTTCSEEEECCCCTTTCCGGGCBCCBCHH-HHHTCTTCCEEEEECCBTCB-CC-S----C-BCTTCSEEEEECSB-CCH
T ss_pred             hcchhhheeecCcchhhcccccccccCHHH-HHhcCCCCcEEEEeCCCCce-ec-c----c-cCCCCcEEEEecCC-CCh
Confidence            466777777754311    1     01221 24567888888887763322 11 1    1 36788888886553 221


Q ss_pred             ccccccCCCcCccccEEeEecCC-------CccccCchhhhccCCCccEEEEecCCccccccccccccccccccCCCcce
Q 039808          206 ICEGSVPNGSFARLRILSVHACP-------KLKFVFSSFMIHFMSNLEDLTVEDCPAIEEIISEGEIIDSGCTALPRLKK  278 (358)
Q Consensus       206 ~~~~~~~~~~~~~L~~L~l~~c~-------~l~~l~~~~~l~~l~~L~~L~i~~c~~l~~i~~~~~~~~~~~~~l~~L~~  278 (358)
                      -.........+|+|++|+++.+.       .+..+.+......+|+|+.|.+.+|.-.......   . .....+|+|+.
T Consensus       208 ~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~~~~~p~Lr~L~L~~~~i~~~~~~~---l-a~a~~~~~L~~  283 (362)
T 2ra8_A          208 SVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAEEQNVVVEM---F-LESDILPQLET  283 (362)
T ss_dssp             HHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTGGGSCTTTCTTCCEEEEESCTTHHHHHHH---H-HHCSSGGGCSE
T ss_pred             HHHHHHHHccCCCCcEEEEeccccccccchhHHHHHHHHhcCCCCCcCEEeCCCCCCchHHHHH---H-HhCccCCCCCE
Confidence            11001111257888888885321       1211111001135788888888887543211100   0 11246788999


Q ss_pred             eccccccccccc-----cCC--CCCCccEEeeeCCc
Q 039808          279 LTLHYLPGLVTI-----WSS--AWPSLEYVSFYDCP  307 (358)
Q Consensus       279 L~l~~c~~L~~~-----~~~--~~~~L~~L~i~~C~  307 (358)
                      |+++. +.++..     ...  .+++|+.|++++|.
T Consensus       284 LdLs~-n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~  318 (362)
T 2ra8_A          284 MDISA-GVLTDEGARLLLDHVDKIKHLKFINMKYNY  318 (362)
T ss_dssp             EECCS-SCCBHHHHHHHHTTHHHHTTCSEEECCSBB
T ss_pred             EECCC-CCCChHHHHHHHhhcccCCcceEEECCCCc
Confidence            98854 456653     222  56889999988873

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=97.88  E-value=1.5e-05  Score=80.21  Aligned_cols=107  Identities=16%  Similarity=0.220  Sum_probs=64.6

Q ss_pred             ccccccCCceEEeeCCC--CChHHHHhhccCccEEEeccCCCCCccCcccccCccCCcEEEeecCCCceEecCCCCcccc
Q 039808          110 AFDYNKQGKCLRFINGE--NIPDAVLQILACCTAFYLDNHLHINSLSDFGVRSINGLKFCIISECPKIETVVDGKELTTV  187 (358)
Q Consensus       110 ~l~~~~~L~~L~l~~~~--~~~~~~~~~l~~L~~L~l~~~~~~~~l~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~  187 (358)
                      .+..+..|+.|.+.++.  .++..+. .+++|+.|++.++ .+..++. .++++++|++|+|++|. +..++..    +.
T Consensus       219 ~~~~l~~L~~L~Ls~n~l~~l~~~~~-~l~~L~~L~Ls~N-~l~~lp~-~~~~l~~L~~L~Ls~N~-l~~lp~~----~~  290 (727)
T 4b8c_D          219 SKYDDQLWHALDLSNLQIFNISANIF-KYDFLTRLYLNGN-SLTELPA-EIKNLSNLRVLDLSHNR-LTSLPAE----LG  290 (727)
T ss_dssp             ---CCCCCCEEECTTSCCSCCCGGGG-GCCSCSCCBCTTS-CCSCCCG-GGGGGTTCCEEECTTSC-CSSCCSS----GG
T ss_pred             hhccCCCCcEEECCCCCCCCCChhhc-CCCCCCEEEeeCC-cCcccCh-hhhCCCCCCEEeCcCCc-CCccChh----hc
Confidence            34445566777776653  3444333 4677777777777 5666654 46777777777777764 3344433    45


Q ss_pred             CCCccceeecccccccccccccccCCCcCccccEEeEecCC
Q 039808          188 IFPSLENLSIHHLWNLTHICEGSVPNGSFARLRILSVHACP  228 (358)
Q Consensus       188 ~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~  228 (358)
                      .+++|++|.++++ .++.+   +..++.+++|+.|+++++.
T Consensus       291 ~l~~L~~L~L~~N-~l~~l---p~~~~~l~~L~~L~L~~N~  327 (727)
T 4b8c_D          291 SCFQLKYFYFFDN-MVTTL---PWEFGNLCNLQFLGVEGNP  327 (727)
T ss_dssp             GGTTCSEEECCSS-CCCCC---CSSTTSCTTCCCEECTTSC
T ss_pred             CCCCCCEEECCCC-CCCcc---ChhhhcCCCccEEeCCCCc
Confidence            6677777777765 33444   2235567777777777764

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=97.88  E-value=0.00019  Score=66.88  Aligned_cols=236  Identities=11%  Similarity=0.055  Sum_probs=148.7

Q ss_pred             cceeccCCC--CccCCchhhcCccccEEEeeecCCCcceecccchhhhhhcCCCCCceEEEEccCchhHHHHHhhhcccc
Q 039808            6 NVEYVKMPP--QLISSGIISRLHALKTLSIVVYPGDKRWYKDVKSVVLEVCNLTELSSLCFHFPEIKLLELFLQRCVAWN   83 (358)
Q Consensus         6 ~L~~l~L~~--~~ip~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~~~~~~l~~l~~~~~~~~~~~   83 (358)
                      +|+.+.++.  +.|+.+.+.+ .+|+++.+.+  +++...      ...+.+|++|+.+.+..+.+..++.  ..   +.
T Consensus       136 ~L~~i~l~~~i~~I~~~aF~~-~~L~~i~lp~--~l~~I~------~~aF~~c~~L~~l~l~~n~l~~I~~--~a---F~  201 (401)
T 4fdw_A          136 QIAKVVLNEGLKSIGDMAFFN-STVQEIVFPS--TLEQLK------EDIFYYCYNLKKADLSKTKITKLPA--ST---FV  201 (401)
T ss_dssp             CCSEEECCTTCCEECTTTTTT-CCCCEEECCT--TCCEEC------SSTTTTCTTCCEEECTTSCCSEECT--TT---TT
T ss_pred             CccEEEeCCCccEECHHhcCC-CCceEEEeCC--CccEeh------HHHhhCcccCCeeecCCCcceEech--hh---Ee
Confidence            577788876  5688887777 4799998875  332221      2358899999999985556666653  11   12


Q ss_pred             ccccceEEEEEeCccccccccCCcccccccccCCceEEeeCCC-CChHHHHhhccCccEEEeccCCCCCccCcccccCcc
Q 039808           84 AQCLTEFRIVVGHDIKNIVSRVPDAVAFDYNKQGKCLRFINGE-NIPDAVLQILACCTAFYLDNHLHINSLSDFGVRSIN  162 (358)
Q Consensus        84 ~~~L~~l~i~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~-~~~~~~~~~l~~L~~L~l~~~~~~~~l~~~~l~~l~  162 (358)
                      ..+|+.+.+.   .+   +..++. ..+.++..|+.+.+.+.- .+....+.. .+|+.+.+.+  .+..+...++.+++
T Consensus       202 ~~~L~~l~lp---~~---l~~I~~-~aF~~~~~L~~l~l~~~l~~I~~~aF~~-~~L~~i~lp~--~i~~I~~~aF~~c~  271 (401)
T 4fdw_A          202 YAGIEEVLLP---VT---LKEIGS-QAFLKTSQLKTIEIPENVSTIGQEAFRE-SGITTVKLPN--GVTNIASRAFYYCP  271 (401)
T ss_dssp             TCCCSEEECC---TT---CCEECT-TTTTTCTTCCCEECCTTCCEECTTTTTT-CCCSEEEEET--TCCEECTTTTTTCT
T ss_pred             ecccCEEEeC---Cc---hheehh-hHhhCCCCCCEEecCCCccCcccccccc-CCccEEEeCC--CccEEChhHhhCCC
Confidence            3556655541   11   111111 356667788888886642 344433333 7899999843  57788777899999


Q ss_pred             CCcEEEeecCCCc----eEecCCCCccccCCCccceeecccccccccccccccCCCcCccccEEeEecCCCccccCchhh
Q 039808          163 GLKFCIISECPKI----ETVVDGKELTTVIFPSLENLSIHHLWNLTHICEGSVPNGSFARLRILSVHACPKLKFVFSSFM  238 (358)
Q Consensus       163 ~L~~L~l~~~~~~----~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~  238 (358)
                      +|+.+.+.++...    ..+....   ...+++|+++.+.+  +++.+..  ..+..+++|+.+.+..  .++.+... .
T Consensus       272 ~L~~l~l~~~~~~~~~~~~I~~~a---F~~c~~L~~l~l~~--~i~~I~~--~aF~~c~~L~~l~lp~--~l~~I~~~-a  341 (401)
T 4fdw_A          272 ELAEVTTYGSTFNDDPEAMIHPYC---LEGCPKLARFEIPE--SIRILGQ--GLLGGNRKVTQLTIPA--NVTQINFS-A  341 (401)
T ss_dssp             TCCEEEEESSCCCCCTTCEECTTT---TTTCTTCCEECCCT--TCCEECT--TTTTTCCSCCEEEECT--TCCEECTT-S
T ss_pred             CCCEEEeCCccccCCcccEECHHH---hhCCccCCeEEeCC--ceEEEhh--hhhcCCCCccEEEECc--cccEEcHH-h
Confidence            9999999875321    2343332   45667889888864  4555532  2244568899999954  46666443 4


Q ss_pred             hccCCCccEEEEecCCccccccccccccccccccCC-Ccceecccc
Q 039808          239 IHFMSNLEDLTVEDCPAIEEIISEGEIIDSGCTALP-RLKKLTLHY  283 (358)
Q Consensus       239 l~~l~~L~~L~i~~c~~l~~i~~~~~~~~~~~~~l~-~L~~L~l~~  283 (358)
                      +.++ +|+.+.+.+. .+..+.      ...+.+++ +++.|++..
T Consensus       342 F~~~-~L~~l~l~~n-~~~~l~------~~~F~~~~~~l~~l~vp~  379 (401)
T 4fdw_A          342 FNNT-GIKEVKVEGT-TPPQVF------EKVWYGFPDDITVIRVPA  379 (401)
T ss_dssp             SSSS-CCCEEEECCS-SCCBCC------CSSCCCSCTTCCEEEECG
T ss_pred             CCCC-CCCEEEEcCC-CCcccc------cccccCCCCCccEEEeCH
Confidence            5667 9999999875 333332      12345564 677887754

>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}

Probab=97.86  E-value=0.0003  Score=65.25  Aligned_cols=78  Identities=18%  Similarity=0.195  Sum_probs=47.8

Q ss_pred             hccCCCccEEEEecCCccccccccccccccccccCCCcceeccccccccccccCC---CCCCccEEeeeCCcCCCccCCC
Q 039808          239 IHFMSNLEDLTVEDCPAIEEIISEGEIIDSGCTALPRLKKLTLHYLPGLVTIWSS---AWPSLEYVSFYDCPRLKNIGLG  315 (358)
Q Consensus       239 l~~l~~L~~L~i~~c~~l~~i~~~~~~~~~~~~~l~~L~~L~l~~c~~L~~~~~~---~~~~L~~L~i~~C~~L~~lP~~  315 (358)
                      +..+.+|+.+.+.+  .++.+.      +.++.++++|+.+.+.+  .++.+...   ++.+|+.+.+..  +++.++..
T Consensus       293 F~~~~~L~~i~l~~--~i~~I~------~~aF~~c~~L~~i~lp~--~v~~I~~~aF~~c~~L~~i~lp~--~l~~I~~~  360 (394)
T 4fs7_A          293 FYGCSSLTEVKLLD--SVKFIG------EEAFESCTSLVSIDLPY--LVEEIGKRSFRGCTSLSNINFPL--SLRKIGAN  360 (394)
T ss_dssp             TTTCTTCCEEEECT--TCCEEC------TTTTTTCTTCCEECCCT--TCCEECTTTTTTCTTCCEECCCT--TCCEECTT
T ss_pred             cccccccccccccc--ccceec------hhhhcCCCCCCEEEeCC--cccEEhHHhccCCCCCCEEEECc--cccEehHH
Confidence            34556666666643  233332      12455667788888743  46666655   678888887754  36777654


Q ss_pred             C-CCCCCeeEEEec
Q 039808          316 S-NLKHSVMEIKAE  328 (358)
Q Consensus       316 ~-~~~~~L~~~~~~  328 (358)
                      . ..+++|+.+.-+
T Consensus       361 aF~~C~~L~~i~lp  374 (394)
T 4fs7_A          361 AFQGCINLKKVELP  374 (394)
T ss_dssp             TBTTCTTCCEEEEE
T ss_pred             HhhCCCCCCEEEEC
Confidence            3 456788877655

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=97.71  E-value=6.1e-06  Score=68.95  Aligned_cols=40  Identities=23%  Similarity=0.271  Sum_probs=19.0

Q ss_pred             hhcCccccEEEeeecCCCcceecccchhhhhhcCCCCCceEEEEccCch
Q 039808           22 ISRLHALKTLSIVVYPGDKRWYKDVKSVVLEVCNLTELSSLCFHFPEIK   70 (358)
Q Consensus        22 i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~~~~~~l~   70 (358)
                      ++++++|++|++++ +.+.       .++ .+.++++|+.|++..+.+.
T Consensus        44 ~~~l~~L~~L~ls~-n~l~-------~l~-~~~~l~~L~~L~l~~n~l~   83 (198)
T 1ds9_A           44 LSTLKACKHLALST-NNIE-------KIS-SLSGMENLRILSLGRNLIK   83 (198)
T ss_dssp             HHHTTTCSEEECSE-EEES-------CCC-CHHHHTTCCEEEEEEEEEC
T ss_pred             HhcCCCCCEEECCC-CCCc-------ccc-ccccCCCCCEEECCCCCcc
Confidence            45566666666655 2211       112 4445555555555444433

>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}

Probab=97.68  E-value=0.0011  Score=61.30  Aligned_cols=97  Identities=15%  Similarity=0.122  Sum_probs=64.9

Q ss_pred             CcCccccEEeEecCCCccccCchhhhccCCCccEEEEecCCccccccccccccccccccCCCcceeccccccccccccCC
Q 039808          214 GSFARLRILSVHACPKLKFVFSSFMIHFMSNLEDLTVEDCPAIEEIISEGEIIDSGCTALPRLKKLTLHYLPGLVTIWSS  293 (358)
Q Consensus       214 ~~~~~L~~L~l~~c~~l~~l~~~~~l~~l~~L~~L~i~~c~~l~~i~~~~~~~~~~~~~l~~L~~L~l~~c~~L~~~~~~  293 (358)
                      ....+|+.+.+.+  .++.+.. ..+.++.+|+.+.|.+  .++.+.      ..++.++++|+.+.+..  +++.+...
T Consensus       294 ~~~~~L~~i~l~~--~i~~I~~-~aF~~c~~L~~i~lp~--~v~~I~------~~aF~~c~~L~~i~lp~--~l~~I~~~  360 (394)
T 4fs7_A          294 YGCSSLTEVKLLD--SVKFIGE-EAFESCTSLVSIDLPY--LVEEIG------KRSFRGCTSLSNINFPL--SLRKIGAN  360 (394)
T ss_dssp             TTCTTCCEEEECT--TCCEECT-TTTTTCTTCCEECCCT--TCCEEC------TTTTTTCTTCCEECCCT--TCCEECTT
T ss_pred             ccccccccccccc--ccceech-hhhcCCCCCCEEEeCC--cccEEh------HHhccCCCCCCEEEECc--cccEehHH
Confidence            3457888888854  4555544 3456788999998864  355443      13566778999998854  47777766


Q ss_pred             ---CCCCccEEeeeCCcCCCccCCCCCCCCCeeEE
Q 039808          294 ---AWPSLEYVSFYDCPRLKNIGLGSNLKHSVMEI  325 (358)
Q Consensus       294 ---~~~~L~~L~i~~C~~L~~lP~~~~~~~~L~~~  325 (358)
                         ++++|+++++..  .++.+.......++|+.|
T Consensus       361 aF~~C~~L~~i~lp~--~~~~~~~~F~~c~~L~~I  393 (394)
T 4fs7_A          361 AFQGCINLKKVELPK--RLEQYRYDFEDTTKFKWI  393 (394)
T ss_dssp             TBTTCTTCCEEEEEG--GGGGGGGGBCTTCEEEEE
T ss_pred             HhhCCCCCCEEEECC--CCEEhhheecCCCCCcEE
Confidence               788999998864  355554444556677665

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=97.67  E-value=1.6e-05  Score=72.96  Aligned_cols=177  Identities=16%  Similarity=0.076  Sum_probs=101.2

Q ss_pred             ccCccEEEeccCCCCC--cc----Cc--ccccCccCCcEEEeecCCCce-Ee--cCC--CCccccCCCccceeecccccc
Q 039808          136 LACCTAFYLDNHLHIN--SL----SD--FGVRSINGLKFCIISECPKIE-TV--VDG--KELTTVIFPSLENLSIHHLWN  202 (358)
Q Consensus       136 l~~L~~L~l~~~~~~~--~l----~~--~~l~~l~~L~~L~l~~~~~~~-~~--~~~--~~~~~~~l~~L~~L~l~~~~~  202 (358)
                      ....+.|.+.... ..  ..    ..  .+...+++|+.|.|.+...-. .+  .+.  -...+..+|+|++|.+.++..
T Consensus       106 ~~~v~~L~lg~~~-~~~~~~~~~~~~L~~s~~~l~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~~~P~L~~L~L~g~~~  184 (362)
T 2ra8_A          106 LPSLKQITIGXWG-YEGEDCSDIADGIVENKEKFAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNN  184 (362)
T ss_dssp             GGGCSEEEECCCC-SSSCCSHHHHHHHHTTHHHHTTCSEEEECCCCTTTCCGGGCBCCBCHHHHHTCTTCCEEEEECCBT
T ss_pred             chhcceEEEcccc-cCCCcHHHHHHHHHHhhhhcchhhheeecCcchhhcccccccccCHHHHHhcCCCCcEEEEeCCCC
Confidence            3456778777552 22  11    01  035678999999996532100 01  010  001235689999999988643


Q ss_pred             cccccccccCCCcCccccEEeEecCCCccccCchhh-hccCCCccEEEEecCCc-------cccccccccccccccccCC
Q 039808          203 LTHICEGSVPNGSFARLRILSVHACPKLKFVFSSFM-IHFMSNLEDLTVEDCPA-------IEEIISEGEIIDSGCTALP  274 (358)
Q Consensus       203 l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~-l~~l~~L~~L~i~~c~~-------l~~i~~~~~~~~~~~~~l~  274 (358)
                      +. +  .+  . ..++|++|.+..|. +..-....+ ...+|+|+.|+++.+..       ++.+..     ......||
T Consensus       185 l~-l--~~--~-~~~~L~~L~L~~~~-l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~-----~l~~~~~p  252 (362)
T 2ra8_A          185 LS-I--GK--K-PRPNLKSLEIISGG-LPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRP-----LFSKDRFP  252 (362)
T ss_dssp             CB-C--CS--C-BCTTCSEEEEECSB-CCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTGG-----GSCTTTCT
T ss_pred             ce-e--cc--c-cCCCCcEEEEecCC-CChHHHHHHHHccCCCCcEEEEeccccccccchhHHHHHH-----HHhcCCCC
Confidence            22 1  11  1 36899999998775 332111111 23799999999964221       111110     01234699


Q ss_pred             Ccceeccccccccccc----cCC-CCCCccEEeeeCCcCCCc-----cCCCCCCCCCeeEEE
Q 039808          275 RLKKLTLHYLPGLVTI----WSS-AWPSLEYVSFYDCPRLKN-----IGLGSNLKHSVMEIK  326 (358)
Q Consensus       275 ~L~~L~l~~c~~L~~~----~~~-~~~~L~~L~i~~C~~L~~-----lP~~~~~~~~L~~~~  326 (358)
                      +|+.|.+.+|.--...    ... .+++|++|+++.+ .+..     ++.++..+++|+.+.
T Consensus       253 ~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n-~L~d~G~~~L~~~L~~l~~L~~L~  313 (362)
T 2ra8_A          253 NLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAG-VLTDEGARLLLDHVDKIKHLKFIN  313 (362)
T ss_dssp             TCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSS-CCBHHHHHHHHTTHHHHTTCSEEE
T ss_pred             CcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCC-CCChHHHHHHHhhcccCCcceEEE
Confidence            9999999887432111    111 5899999999875 4555     455544556666664

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=97.47  E-value=6.6e-06  Score=75.98  Aligned_cols=163  Identities=13%  Similarity=0.097  Sum_probs=75.9

Q ss_pred             hccCccEEEeccCCCCCccCccc----cc-CccCCcEEEeecCCCceEecCCCCccccCCCccceeeccccccccccccc
Q 039808          135 ILACCTAFYLDNHLHINSLSDFG----VR-SINGLKFCIISECPKIETVVDGKELTTVIFPSLENLSIHHLWNLTHICEG  209 (358)
Q Consensus       135 ~l~~L~~L~l~~~~~~~~l~~~~----l~-~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~  209 (358)
                      .++.++.|++.++ .+.......    +. ..++|++|++++|.........   -...+++|++|+++++. ++.....
T Consensus        70 ~~~~L~~L~Ls~n-~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~---l~~~L~~L~~L~Ls~n~-l~~~~~~  144 (372)
T 3un9_A           70 VLSSLRQLNLAGV-RMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRT---LLPVFLRARKLGLQLNS-LGPEACK  144 (372)
T ss_dssp             HHTTCCEEECTTS-CCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHH---THHHHHTEEEEECCSSC-CCHHHHH
T ss_pred             HHhhCCEEEecCC-CCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHH---HHHHHHhccHhhcCCCC-CCHHHHH
Confidence            3456666666666 333321111    11 2256777777666321110000   01234566667666653 2211000


Q ss_pred             ccC--C-CcCccccEEeEecCCCccccCch---hhhccCCCccEEEEecCCccccccccccccccccccCCCcceecccc
Q 039808          210 SVP--N-GSFARLRILSVHACPKLKFVFSS---FMIHFMSNLEDLTVEDCPAIEEIISEGEIIDSGCTALPRLKKLTLHY  283 (358)
Q Consensus       210 ~~~--~-~~~~~L~~L~l~~c~~l~~l~~~---~~l~~l~~L~~L~i~~c~~l~~i~~~~~~~~~~~~~l~~L~~L~l~~  283 (358)
                      ...  . ...++|++|++++|. ++.....   ..+...++|++|++++|. +.....  ......+...++|+.|++++
T Consensus       145 ~L~~~L~~~~~~L~~L~Ls~n~-l~~~~~~~l~~~L~~~~~L~~L~Ls~N~-l~~~g~--~~L~~~L~~~~~L~~L~Ls~  220 (372)
T 3un9_A          145 DLRDLLLHDQCQITTLRLSNNP-LTAAGVAVLMEGLAGNTSVTHLSLLHTG-LGDEGL--ELLAAQLDRNRQLQELNVAY  220 (372)
T ss_dssp             HHHHHHHSTTCCCCEEECCSSC-CHHHHHHHHHHHHHTCSSCCEEECTTSS-CHHHHH--HHHHHHGGGCSCCCEEECCS
T ss_pred             HHHHHHHhcCCccceeeCCCCC-CChHHHHHHHHHHhcCCCcCEEeCCCCC-CCcHHH--HHHHHHHhcCCCcCeEECCC
Confidence            000  0 123567777777763 4331111   123456777777777764 322100  00001234456777777776


Q ss_pred             ccccccccCC-------CCCCccEEeeeCCc
Q 039808          284 LPGLVTIWSS-------AWPSLEYVSFYDCP  307 (358)
Q Consensus       284 c~~L~~~~~~-------~~~~L~~L~i~~C~  307 (358)
                      | .++.....       ..++|++|++++|+
T Consensus       221 N-~i~~~g~~~l~~~L~~~~~L~~L~Ls~N~  250 (372)
T 3un9_A          221 N-GAGDTAALALARAAREHPSLELLHLYFNE  250 (372)
T ss_dssp             S-CCCHHHHHHHHHHHHHCSSCCEEECTTSS
T ss_pred             C-CCCHHHHHHHHHHHHhCCCCCEEeccCCC
Confidence            6 44433221       35777777777764

>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}

Probab=97.44  E-value=0.0052  Score=56.78  Aligned_cols=29  Identities=24%  Similarity=0.301  Sum_probs=17.8

Q ss_pred             ceeccCCC--CccCCchhhcCccccEEEeee
Q 039808            7 VEYVKMPP--QLISSGIISRLHALKTLSIVV   35 (358)
Q Consensus         7 L~~l~L~~--~~ip~~~i~~L~~L~~L~l~~   35 (358)
                      |+.+.+|.  +.|+...+.++.+|+.+.+.+
T Consensus        66 L~sI~iP~svt~Ig~~AF~~C~~L~~i~~~~   96 (394)
T 4gt6_A           66 LTSVQIPDTVTEIGSNAFYNCTSLKRVTIQD   96 (394)
T ss_dssp             CCEEEECTTCCEECTTTTTTCTTCCEEEEGG
T ss_pred             CEEEEECCCeeEEhHHHhhCCccCceEeecC
Confidence            55555554  456666666666677666654

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=97.31  E-value=0.00064  Score=61.68  Aligned_cols=87  Identities=24%  Similarity=0.233  Sum_probs=57.2

Q ss_pred             ccCCCccceeecccccccccccccccCCCcCccccEEeEecCCCccccCchhhhccCCCccEEEEecCCccccccccccc
Q 039808          186 TVIFPSLENLSIHHLWNLTHICEGSVPNGSFARLRILSVHACPKLKFVFSSFMIHFMSNLEDLTVEDCPAIEEIISEGEI  265 (358)
Q Consensus       186 ~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~l~~l~~L~~L~i~~c~~l~~i~~~~~~  265 (358)
                      +..+++|++|++++...++.+..  ..++.+++|+.|+++++ ++..+++ ..+..+++|+.|+++++ .+..++.    
T Consensus        27 l~~~~~L~~L~l~~~n~l~~~~~--~~~~~l~~L~~L~l~~N-~l~~~~~-~~~~~l~~L~~L~l~~N-~l~~~~~----   97 (347)
T 2ifg_A           27 LPGAENLTELYIENQQHLQHLEL--RDLRGLGELRNLTIVKS-GLRFVAP-DAFHFTPRLSRLNLSFN-ALESLSW----   97 (347)
T ss_dssp             SCSCSCCSEEECCSCSSCCEECG--GGSCSCCCCSEEECCSS-CCCEECT-TGGGSCSCCCEEECCSS-CCSCCCS----
T ss_pred             CCCCCCeeEEEccCCCCCCCcCh--hHhccccCCCEEECCCC-ccceeCH-HHhcCCcCCCEEeCCCC-ccceeCH----
Confidence            34567888888876556665532  23557888899998886 5777644 35578888999988875 5555541    


Q ss_pred             cccccccCCCcceeccccc
Q 039808          266 IDSGCTALPRLKKLTLHYL  284 (358)
Q Consensus       266 ~~~~~~~l~~L~~L~l~~c  284 (358)
                        ..+..+ +|+.|++.++
T Consensus        98 --~~~~~~-~L~~l~l~~N  113 (347)
T 2ifg_A           98 --KTVQGL-SLQELVLSGN  113 (347)
T ss_dssp             --TTTCSC-CCCEEECCSS
T ss_pred             --HHcccC-CceEEEeeCC
Confidence              112223 3888888654

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=97.29  E-value=0.00063  Score=55.38  Aligned_cols=58  Identities=16%  Similarity=0.203  Sum_probs=28.2

Q ss_pred             cCccEEEeccCCCCCccCcccccCccCCcEEEeecCCCceEecCCCCccccCCCccceeeccc
Q 039808          137 ACCTAFYLDNHLHINSLSDFGVRSINGLKFCIISECPKIETVVDGKELTTVIFPSLENLSIHH  199 (358)
Q Consensus       137 ~~L~~L~l~~~~~~~~l~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~  199 (358)
                      ++++.|++.++ .+..++...++++++|++|++++| .+..++...   ...+++|+.|++++
T Consensus        33 ~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~Ls~N-~l~~i~~~~---~~~l~~L~~L~L~~   90 (174)
T 2r9u_A           33 TDKQRLWLNNN-QITKLEPGVFDHLVNLQQLYFNSN-KLTAIPTGV---FDKLTQLTQLDLND   90 (174)
T ss_dssp             TTCSEEECCSS-CCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTT---TTTCTTCCEEECCS
T ss_pred             CCCcEEEeCCC-CccccCHHHhcCCcCCCEEECCCC-CCCccChhH---hCCcchhhEEECCC
Confidence            45555555555 444443334555666666666555 333332221   23345555555544

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=97.26  E-value=0.00052  Score=55.87  Aligned_cols=81  Identities=11%  Similarity=0.195  Sum_probs=57.3

Q ss_pred             cCCceEEeeCCC--CChHHHHhhccCccEEEeccCCCCCccCcccccCccCCcEEEeecCCCceEecCCCCccccCCCcc
Q 039808          115 KQGKCLRFINGE--NIPDAVLQILACCTAFYLDNHLHINSLSDFGVRSINGLKFCIISECPKIETVVDGKELTTVIFPSL  192 (358)
Q Consensus       115 ~~L~~L~l~~~~--~~~~~~~~~l~~L~~L~l~~~~~~~~l~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L  192 (358)
                      ..++.|.+.++.  +++...+..+++|+.|++.++ .+..++...+.++++|++|++++| .+..++...   ...+++|
T Consensus        33 ~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N-~l~~i~~~~~~~l~~L~~L~L~~N-~l~~l~~~~---~~~l~~L  107 (174)
T 2r9u_A           33 TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSN-KLTAIPTGVFDKLTQLTQLDLNDN-HLKSIPRGA---FDNLKSL  107 (174)
T ss_dssp             TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTT---TTTCTTC
T ss_pred             CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCC-CCCccChhHhCCcchhhEEECCCC-ccceeCHHH---hccccCC
Confidence            367778877764  555555667889999999998 788887655788999999999887 344443321   4456677


Q ss_pred             ceeecccc
Q 039808          193 ENLSIHHL  200 (358)
Q Consensus       193 ~~L~l~~~  200 (358)
                      +.|++.+.
T Consensus       108 ~~L~L~~N  115 (174)
T 2r9u_A          108 THIYLYNN  115 (174)
T ss_dssp             SEEECCSS
T ss_pred             CEEEeCCC
Confidence            77777654

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=97.21  E-value=0.00088  Score=54.23  Aligned_cols=58  Identities=16%  Similarity=0.187  Sum_probs=28.5

Q ss_pred             cCccEEEeccCCCCCccCcccccCccCCcEEEeecCCCceEecCCCCccccCCCccceeeccc
Q 039808          137 ACCTAFYLDNHLHINSLSDFGVRSINGLKFCIISECPKIETVVDGKELTTVIFPSLENLSIHH  199 (358)
Q Consensus       137 ~~L~~L~l~~~~~~~~l~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~  199 (358)
                      ++++.|++.++ .+..+....+.++++|++|++++|. +..++...   ...+++|++|++++
T Consensus        30 ~~l~~L~L~~N-~i~~~~~~~~~~l~~L~~L~Ls~N~-l~~l~~~~---f~~l~~L~~L~L~~   87 (170)
T 3g39_A           30 TTTQVLYLYDN-QITKLEPGVFDRLTQLTRLDLDNNQ-LTVLPAGV---FDKLTQLTQLSLND   87 (170)
T ss_dssp             TTCSEEECCSS-CCCCCCTTTTTTCTTCSEEECCSSC-CCCCCTTT---TTTCTTCCEEECCS
T ss_pred             CCCcEEEcCCC-cCCccChhhhcCcccCCEEECCCCC-cCccChhh---ccCCCCCCEEECCC
Confidence            45555565555 5555543345566666666666552 33332221   23344555555544

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=97.21  E-value=0.0012  Score=59.91  Aligned_cols=86  Identities=17%  Similarity=0.175  Sum_probs=60.7

Q ss_pred             CCcCccccEEeEecCCCccccCchhhhccCCCccEEEEecCCccccccccccccccccccCCCcceeccccccccccccC
Q 039808          213 NGSFARLRILSVHACPKLKFVFSSFMIHFMSNLEDLTVEDCPAIEEIISEGEIIDSGCTALPRLKKLTLHYLPGLVTIWS  292 (358)
Q Consensus       213 ~~~~~~L~~L~l~~c~~l~~l~~~~~l~~l~~L~~L~i~~c~~l~~i~~~~~~~~~~~~~l~~L~~L~l~~c~~L~~~~~  292 (358)
                      ++.+++|++|+++++.+++.+++ ..++.+++|+.|+++++ .+..++.      ..+..+++|+.|+++++ .|+.++.
T Consensus        27 l~~~~~L~~L~l~~~n~l~~~~~-~~~~~l~~L~~L~l~~N-~l~~~~~------~~~~~l~~L~~L~l~~N-~l~~~~~   97 (347)
T 2ifg_A           27 LPGAENLTELYIENQQHLQHLEL-RDLRGLGELRNLTIVKS-GLRFVAP------DAFHFTPRLSRLNLSFN-ALESLSW   97 (347)
T ss_dssp             SCSCSCCSEEECCSCSSCCEECG-GGSCSCCCCSEEECCSS-CCCEECT------TGGGSCSCCCEEECCSS-CCSCCCS
T ss_pred             CCCCCCeeEEEccCCCCCCCcCh-hHhccccCCCEEECCCC-ccceeCH------HHhcCCcCCCEEeCCCC-ccceeCH
Confidence            45677888888886556777644 34678888888888886 5655541      24567888888888664 7887776


Q ss_pred             C--CCCCccEEeeeCCc
Q 039808          293 S--AWPSLEYVSFYDCP  307 (358)
Q Consensus       293 ~--~~~~L~~L~i~~C~  307 (358)
                      .  ...+|+.|++.+++
T Consensus        98 ~~~~~~~L~~l~l~~N~  114 (347)
T 2ifg_A           98 KTVQGLSLQELVLSGNP  114 (347)
T ss_dssp             TTTCSCCCCEEECCSSC
T ss_pred             HHcccCCceEEEeeCCC
Confidence            6  33338888888764

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=97.12  E-value=0.00089  Score=54.20  Aligned_cols=81  Identities=15%  Similarity=0.194  Sum_probs=57.9

Q ss_pred             cCCceEEeeCCC--CChHHHHhhccCccEEEeccCCCCCccCcccccCccCCcEEEeecCCCceEecCCCCccccCCCcc
Q 039808          115 KQGKCLRFINGE--NIPDAVLQILACCTAFYLDNHLHINSLSDFGVRSINGLKFCIISECPKIETVVDGKELTTVIFPSL  192 (358)
Q Consensus       115 ~~L~~L~l~~~~--~~~~~~~~~l~~L~~L~l~~~~~~~~l~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L  192 (358)
                      ..++.|.+.++.  +++...+..+++|+.|++.++ .+..++...+.++++|++|++++|. +..++...   ...+++|
T Consensus        30 ~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N-~l~~l~~~~f~~l~~L~~L~L~~N~-l~~~~~~~---~~~l~~L  104 (170)
T 3g39_A           30 TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNN-QLTVLPAGVFDKLTQLTQLSLNDNQ-LKSIPRGA---FDNLKSL  104 (170)
T ss_dssp             TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTT---TTTCTTC
T ss_pred             CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCC-CcCccChhhccCCCCCCEEECCCCc-cCEeCHHH---hcCCCCC
Confidence            467788887764  555555667889999999998 7878776567899999999999874 44443321   4456677


Q ss_pred             ceeecccc
Q 039808          193 ENLSIHHL  200 (358)
Q Consensus       193 ~~L~l~~~  200 (358)
                      +.|++++.
T Consensus       105 ~~L~L~~N  112 (170)
T 3g39_A          105 THIWLLNN  112 (170)
T ss_dssp             CEEECCSS
T ss_pred             CEEEeCCC
Confidence            77777653

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=95.85  E-value=0.0012  Score=60.75  Aligned_cols=146  Identities=10%  Similarity=-0.067  Sum_probs=67.9

Q ss_pred             cCccEEEeccCCCCCccCcc-cccCccCCcEEEeecCCCceEecCCCCccc-cCCCccceeecccccccccccccc--cC
Q 039808          137 ACCTAFYLDNHLHINSLSDF-GVRSINGLKFCIISECPKIETVVDGKELTT-VIFPSLENLSIHHLWNLTHICEGS--VP  212 (358)
Q Consensus       137 ~~L~~L~l~~~~~~~~l~~~-~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~-~~l~~L~~L~l~~~~~l~~~~~~~--~~  212 (358)
                      ++++.|++.++ .+...... -...+++|++|++++|.-.......-...+ ...++|++|++++|. ++......  ..
T Consensus       101 ~~L~~L~Ls~n-~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L~~~~~~L~~L~Ls~n~-l~~~~~~~l~~~  178 (372)
T 3un9_A          101 HALDEVNLASC-QLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLLLHDQCQITTLRLSNNP-LTAAGVAVLMEG  178 (372)
T ss_dssp             SCEEEEECTTC-CCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHHHSTTCCCCEEECCSSC-CHHHHHHHHHHH
T ss_pred             CCceEEEecCC-CCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHHHhcCCccceeeCCCCC-CChHHHHHHHHH
Confidence            46667777666 34321111 123455677777777632111000000001 234567777777664 22210000  00


Q ss_pred             CCcCccccEEeEecCCCccccCc---hhhhccCCCccEEEEecCCccccccccccccccccccCCCcceecccccccccc
Q 039808          213 NGSFARLRILSVHACPKLKFVFS---SFMIHFMSNLEDLTVEDCPAIEEIISEGEIIDSGCTALPRLKKLTLHYLPGLVT  289 (358)
Q Consensus       213 ~~~~~~L~~L~l~~c~~l~~l~~---~~~l~~l~~L~~L~i~~c~~l~~i~~~~~~~~~~~~~l~~L~~L~l~~c~~L~~  289 (358)
                      ....++|++|++++|. ++..+.   ...+...++|+.|++++|. +......  .........++|+.|+++++ .++.
T Consensus       179 L~~~~~L~~L~Ls~N~-l~~~g~~~L~~~L~~~~~L~~L~Ls~N~-i~~~g~~--~l~~~L~~~~~L~~L~Ls~N-~i~~  253 (372)
T 3un9_A          179 LAGNTSVTHLSLLHTG-LGDEGLELLAAQLDRNRQLQELNVAYNG-AGDTAAL--ALARAAREHPSLELLHLYFN-ELSS  253 (372)
T ss_dssp             HHTCSSCCEEECTTSS-CHHHHHHHHHHHGGGCSCCCEEECCSSC-CCHHHHH--HHHHHHHHCSSCCEEECTTS-SCCH
T ss_pred             HhcCCCcCEEeCCCCC-CCcHHHHHHHHHHhcCCCcCeEECCCCC-CCHHHHH--HHHHHHHhCCCCCEEeccCC-CCCH
Confidence            1235677788877764 443211   1233456778888887763 3221100  00012334577888888766 3443

>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}

Probab=95.00  E-value=2  Score=38.82  Aligned_cols=99  Identities=15%  Similarity=0.172  Sum_probs=59.2

Q ss_pred             CccccEEeEecCCCccccCchhhhccCCCccEEEEecCCccccccccccccccccccCCCcceeccccccccccccCC--
Q 039808          216 FARLRILSVHACPKLKFVFSSFMIHFMSNLEDLTVEDCPAIEEIISEGEIIDSGCTALPRLKKLTLHYLPGLVTIWSS--  293 (358)
Q Consensus       216 ~~~L~~L~l~~c~~l~~l~~~~~l~~l~~L~~L~i~~c~~l~~i~~~~~~~~~~~~~l~~L~~L~l~~c~~L~~~~~~--  293 (358)
                      ...|+.+.+.+  .++.+.. ..+..+.+|+.+.+..  .++.+.      ...+..+++|+.+.+.+. .++.++..  
T Consensus       239 ~~~L~~i~lp~--~v~~I~~-~aF~~~~~l~~i~l~~--~i~~i~------~~aF~~c~~L~~i~l~~~-~i~~I~~~aF  306 (379)
T 4h09_A          239 MKALDEIAIPK--NVTSIGS-FLLQNCTALKTLNFYA--KVKTVP------YLLCSGCSNLTKVVMDNS-AIETLEPRVF  306 (379)
T ss_dssp             CSSCCEEEECT--TCCEECT-TTTTTCTTCCEEEECC--CCSEEC------TTTTTTCTTCCEEEECCT-TCCEECTTTT
T ss_pred             CccceEEEcCC--CccEeCc-cccceeehhccccccc--cceecc------cccccccccccccccccc-ccceehhhhh
Confidence            45666666643  2444433 2345667777777753  344333      124566788888888543 56777666  


Q ss_pred             -CCCCccEEeeeCCcCCCccCCC-CCCCCCeeEEEec
Q 039808          294 -AWPSLEYVSFYDCPRLKNIGLG-SNLKHSVMEIKAE  328 (358)
Q Consensus       294 -~~~~L~~L~i~~C~~L~~lP~~-~~~~~~L~~~~~~  328 (358)
                       ++.+|+.+.+..  +++.++.. ...+++|+.+.-+
T Consensus       307 ~~c~~L~~i~lp~--~l~~I~~~aF~~C~~L~~i~ip  341 (379)
T 4h09_A          307 MDCVKLSSVTLPT--ALKTIQVYAFKNCKALSTISYP  341 (379)
T ss_dssp             TTCTTCCEEECCT--TCCEECTTTTTTCTTCCCCCCC
T ss_pred             cCCCCCCEEEcCc--cccEEHHHHhhCCCCCCEEEEC
Confidence             778888888853  46666554 2456677766444

>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}

Probab=94.86  E-value=0.41  Score=43.83  Aligned_cols=52  Identities=13%  Similarity=0.059  Sum_probs=34.4

Q ss_pred             ccceeccCCC--CccCCchhhcCccccEEEeeecCCCcceecccchhhhhhcCCCCCceEEE
Q 039808            5 CNVEYVKMPP--QLISSGIISRLHALKTLSIVVYPGDKRWYKDVKSVVLEVCNLTELSSLCF   64 (358)
Q Consensus         5 ~~L~~l~L~~--~~ip~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~~   64 (358)
                      .+|+.+.++.  ..++...+..+.+|+.+.+..  ......      ...+.+|..|+.+.+
T Consensus       114 ~~L~~i~~~~~~~~I~~~aF~~c~~L~~i~lp~--~~~~I~------~~~F~~c~~L~~i~~  167 (394)
T 4gt6_A          114 SELTDIPILDSVTEIDSEAFHHCEELDTVTIPE--GVTSVA------DGMFSYCYSLHTVTL  167 (394)
T ss_dssp             TTCCBCGGGTTCSEECTTTTTTCTTCCEEECCT--TCCEEC------TTTTTTCTTCCEEEC
T ss_pred             ccceeeccCCccceehhhhhhhhcccccccccc--eeeeec------ccceecccccccccc
Confidence            4566666655  567888888899999998864  221111      224677888887776

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=93.34  E-value=0.029  Score=48.84  Aligned_cols=13  Identities=23%  Similarity=0.243  Sum_probs=6.2

Q ss_pred             ccCCCccEEEEec
Q 039808          240 HFMSNLEDLTVED  252 (358)
Q Consensus       240 ~~l~~L~~L~i~~  252 (358)
                      +.+++|+.|++++
T Consensus       193 ~~l~~L~~L~Ls~  205 (267)
T 3rw6_A          193 QKAPNLKILNLSG  205 (267)
T ss_dssp             HHSTTCCEEECTT
T ss_pred             hhCCCCCEEECCC
Confidence            3445555555544

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=91.71  E-value=0.15  Score=44.29  Aligned_cols=41  Identities=20%  Similarity=0.046  Sum_probs=18.3

Q ss_pred             cCCCcceeccccccccccccCC-CCC--CccEEeeeCCcCCCccC
Q 039808          272 ALPRLKKLTLHYLPGLVTIWSS-AWP--SLEYVSFYDCPRLKNIG  313 (358)
Q Consensus       272 ~l~~L~~L~l~~c~~L~~~~~~-~~~--~L~~L~i~~C~~L~~lP  313 (358)
                      .+|+|+.|++++. .++.+..- .+.  +|++|.+.++|--..+|
T Consensus       194 ~l~~L~~L~Ls~N-~i~~~~~l~~l~~l~L~~L~L~~Npl~~~~~  237 (267)
T 3rw6_A          194 KAPNLKILNLSGN-ELKSERELDKIKGLKLEELWLDGNSLCDTFR  237 (267)
T ss_dssp             HSTTCCEEECTTS-CCCSGGGGGGGTTSCCSEEECTTSTTGGGCS
T ss_pred             hCCCCCEEECCCC-ccCCchhhhhcccCCcceEEccCCcCccccC
Confidence            4555555555433 34433211 111  55555555555333333

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=91.65  E-value=0.039  Score=45.01  Aligned_cols=19  Identities=11%  Similarity=-0.085  Sum_probs=13.2

Q ss_pred             cccCccCCcEEEeecCCCc
Q 039808          157 GVRSINGLKFCIISECPKI  175 (358)
Q Consensus       157 ~l~~l~~L~~L~l~~~~~~  175 (358)
                      .+...+.|++|++++|..+
T Consensus        31 ~l~~~~~L~~L~L~~n~~i   49 (185)
T 1io0_A           31 IQNNDPDLEEVNLNNIMNI   49 (185)
T ss_dssp             HHTTCTTCCEEECTTCTTC
T ss_pred             HHhcCCCCCEEEecCCCCC
Confidence            3566778888888877333

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=89.88  E-value=0.085  Score=42.96  Aligned_cols=16  Identities=13%  Similarity=-0.006  Sum_probs=9.4

Q ss_pred             ccCccCCcEEEeecCC
Q 039808          158 VRSINGLKFCIISECP  173 (358)
Q Consensus       158 l~~l~~L~~L~l~~~~  173 (358)
                      +...++|++|++++|.
T Consensus        61 L~~~~~L~~L~Ls~n~   76 (185)
T 1io0_A           61 LKTNTYVKKFSIVGTR   76 (185)
T ss_dssp             HTTCCSCCEEECTTSC
T ss_pred             HHhCCCcCEEECcCCC
Confidence            4445566666666653

>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}

Probab=87.49  E-value=2.2  Score=38.55  Aligned_cols=22  Identities=5%  Similarity=0.163  Sum_probs=10.8

Q ss_pred             CCccCcccccCccCCcEEEeec
Q 039808          150 INSLSDFGVRSINGLKFCIISE  171 (358)
Q Consensus       150 ~~~l~~~~l~~l~~L~~L~l~~  171 (358)
                      +..+...++.++.+|+.+.+.+
T Consensus       274 i~~i~~~aF~~c~~L~~i~l~~  295 (379)
T 4h09_A          274 VKTVPYLLCSGCSNLTKVVMDN  295 (379)
T ss_dssp             CSEECTTTTTTCTTCCEEEECC
T ss_pred             ceeccccccccccccccccccc
Confidence            3344333455555555555543

>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*

Probab=81.44  E-value=1.2  Score=33.79  Aligned_cols=42  Identities=7%  Similarity=-0.112  Sum_probs=25.4

Q ss_pred             ccCCchhhcCccccEEEeeecCCCcceecccchhhhhhcCCCCCceEEEEcc
Q 039808           16 LISSGIISRLHALKTLSIVVYPGDKRWYKDVKSVVLEVCNLTELSSLCFHFP   67 (358)
Q Consensus        16 ~ip~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~~~~~   67 (358)
                      .+|.++   -.+|++|+|++ +.+..+.      ...+..+++|+.|.+..+
T Consensus        24 ~vP~~l---p~~l~~L~Ls~-N~l~~l~------~~~f~~l~~L~~L~L~~N   65 (130)
T 3rfe_A           24 SLPTAF---PVDTTELVLTG-NNLTALP------PGLLDALPALRTAHLGAN   65 (130)
T ss_dssp             TSCSCC---CTTCSEEECTT-SCCSSCC------TTTGGGCTTCCEEECCSS
T ss_pred             cCCCCC---CcCCCEEECCC-CcCCccC------hhhhhhccccCEEEecCC
Confidence            456543   23588888887 4443222      224667778888887654

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	358
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	99.57
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	99.56
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	99.48
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	99.44
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	99.34
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	99.32
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	99.29
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	99.26
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.23
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	99.22
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	99.2
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	99.2
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.15
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.14
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	99.13
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	99.12
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.12
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	99.09
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	98.98
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	98.95
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	98.93
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	98.8
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	98.51
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	98.44
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	98.44
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	98.27
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	98.16
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	98.14
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	98.13
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	97.84
d2ifga3	156	High affinity nerve growth factor receptor, N-term	97.7
d2ifga3	156	High affinity nerve growth factor receptor, N-term	97.61
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	97.49
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	96.45
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	94.03
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	93.84
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	93.68
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	92.57
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	82.74

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.57  E-value=6e-14  Score=124.51  Aligned_cols=247  Identities=15%  Similarity=0.138  Sum_probs=132.4

Q ss_pred             CccCCchhhcCccccEEEeeecCCCcceecccchhh-hhhcCCCCCceEEEEccCchhHHH-HHhhhccccccccceEEE
Q 039808           15 QLISSGIISRLHALKTLSIVVYPGDKRWYKDVKSVV-LEVCNLTELSSLCFHFPEIKLLEL-FLQRCVAWNAQCLTEFRI   92 (358)
Q Consensus        15 ~~ip~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~-~~l~~l~~L~~L~~~~~~l~~l~~-~~~~~~~~~~~~L~~l~i   92 (358)
                      +.+|+++   ..++++|++++ +.+       +.++ ..+.++++|++|++..+.+..++. .+.     .+++|+.+.+
T Consensus        23 ~~lP~~l---~~~l~~L~Ls~-N~i-------~~l~~~~f~~l~~L~~L~l~~n~~~~i~~~~f~-----~l~~L~~L~l   86 (305)
T d1xkua_          23 EKVPKDL---PPDTALLDLQN-NKI-------TEIKDGDFKNLKNLHTLILINNKISKISPGAFA-----PLVKLERLYL   86 (305)
T ss_dssp             CSCCCSC---CTTCCEEECCS-SCC-------CCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTT-----TCTTCCEEEC
T ss_pred             CccCCCC---CCCCCEEECcC-CcC-------CCcChhHhhccccccccccccccccccchhhhh-----CCCccCEecc
Confidence            3456653   24566777666 222       2222 245666667766665555444321 111     2344444443


Q ss_pred             EEeCccccccccCCcccccccccCCceEEeeCCC--CChHHHHhhccCccEEEeccCCCCC-ccCcccccCccCCcEEEe
Q 039808           93 VVGHDIKNIVSRVPDAVAFDYNKQGKCLRFINGE--NIPDAVLQILACCTAFYLDNHLHIN-SLSDFGVRSINGLKFCII  169 (358)
Q Consensus        93 ~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~--~~~~~~~~~l~~L~~L~l~~~~~~~-~l~~~~l~~l~~L~~L~l  169 (358)
                         ..+  .+..+|.    .....+..|...++.  .++............+....+.... ......+..+++|+.+++
T Consensus        87 ---~~n--~l~~l~~----~~~~~l~~L~~~~n~l~~l~~~~~~~~~~~~~l~~~~n~~~~~~~~~~~~~~l~~L~~l~l  157 (305)
T d1xkua_          87 ---SKN--QLKELPE----KMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRI  157 (305)
T ss_dssp             ---CSS--CCSBCCS----SCCTTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEEC
T ss_pred             ---cCC--ccCcCcc----chhhhhhhhhccccchhhhhhhhhhccccccccccccccccccCCCccccccccccCcccc
Confidence               111  0122221    011245555554432  3344444445556666655442221 112224666777888888


Q ss_pred             ecCCCceEecCCCCccccCCCccceeecccccccccccccccCCCcCccccEEeEecCCCccccCchhhhccCCCccEEE
Q 039808          170 SECPKIETVVDGKELTTVIFPSLENLSIHHLWNLTHICEGSVPNGSFARLRILSVHACPKLKFVFSSFMIHFMSNLEDLT  249 (358)
Q Consensus       170 ~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~l~~l~~L~~L~  249 (358)
                      .+|. +..++      ...+++|++|++.++......   +.....+++++.|.++++ .++.+.+ ..+.++++|++|+
T Consensus       158 ~~n~-l~~l~------~~~~~~L~~L~l~~n~~~~~~---~~~~~~~~~l~~L~~s~n-~l~~~~~-~~~~~l~~L~~L~  225 (305)
T d1xkua_         158 ADTN-ITTIP------QGLPPSLTELHLDGNKITKVD---AASLKGLNNLAKLGLSFN-SISAVDN-GSLANTPHLRELH  225 (305)
T ss_dssp             CSSC-CCSCC------SSCCTTCSEEECTTSCCCEEC---TGGGTTCTTCCEEECCSS-CCCEECT-TTGGGSTTCCEEE
T ss_pred             ccCC-ccccC------cccCCccCEEECCCCcCCCCC---hhHhhccccccccccccc-ccccccc-ccccccccceeee
Confidence            7763 33221      224677888887765543332   222345567777777776 4555544 3556778888888


Q ss_pred             EecCCccccccccccccccccccCCCcceeccccccccccccCC---------CCCCccEEeeeCCc
Q 039808          250 VEDCPAIEEIISEGEIIDSGCTALPRLKKLTLHYLPGLVTIWSS---------AWPSLEYVSFYDCP  307 (358)
Q Consensus       250 i~~c~~l~~i~~~~~~~~~~~~~l~~L~~L~l~~c~~L~~~~~~---------~~~~L~~L~i~~C~  307 (358)
                      ++++ .++.++       .++..+++|+.|+++++ +++.++..         ..++|+.|+++++|
T Consensus       226 L~~N-~L~~lp-------~~l~~l~~L~~L~Ls~N-~i~~i~~~~f~~~~~~~~~~~L~~L~L~~N~  283 (305)
T d1xkua_         226 LNNN-KLVKVP-------GGLADHKYIQVVYLHNN-NISAIGSNDFCPPGYNTKKASYSGVSLFSNP  283 (305)
T ss_dssp             CCSS-CCSSCC-------TTTTTCSSCCEEECCSS-CCCCCCTTSSSCSSCCTTSCCCSEEECCSSS
T ss_pred             cccc-cccccc-------cccccccCCCEEECCCC-ccCccChhhccCcchhcccCCCCEEECCCCc
Confidence            8776 566665       34667778888888765 57766543         35677777777765

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.56  E-value=1.5e-13  Score=125.51  Aligned_cols=96  Identities=16%  Similarity=0.156  Sum_probs=62.7

Q ss_pred             CccccEEeEecCCCccccCchhhhccCCCccEEEEecCCccccccccccccccccccCCCcceeccccccccccccCC-C
Q 039808          216 FARLRILSVHACPKLKFVFSSFMIHFMSNLEDLTVEDCPAIEEIISEGEIIDSGCTALPRLKKLTLHYLPGLVTIWSS-A  294 (358)
Q Consensus       216 ~~~L~~L~l~~c~~l~~l~~~~~l~~l~~L~~L~i~~c~~l~~i~~~~~~~~~~~~~l~~L~~L~l~~c~~L~~~~~~-~  294 (358)
                      ++.++.+.+..+. +..+   ..+..+++++.|+++++ .+..++        .+..+|+|++|++++| .++.++.- .
T Consensus       284 ~~~l~~l~~~~n~-l~~~---~~~~~~~~l~~L~ls~n-~l~~l~--------~l~~l~~L~~L~L~~n-~l~~l~~l~~  349 (384)
T d2omza2         284 LTALTNLELNENQ-LEDI---SPISNLKNLTYLTLYFN-NISDIS--------PVSSLTKLQRLFFANN-KVSDVSSLAN  349 (384)
T ss_dssp             CTTCSEEECCSSC-CSCC---GGGGGCTTCSEEECCSS-CCSCCG--------GGGGCTTCCEEECCSS-CCCCCGGGGG
T ss_pred             ccccccccccccc-cccc---cccchhcccCeEECCCC-CCCCCc--------ccccCCCCCEEECCCC-CCCCChhHcC
Confidence            4455555554432 2222   22456677777777765 444433        3677889999999887 67776633 7


Q ss_pred             CCCccEEeeeCCcCCCccCCCCCCCCCeeEEEe
Q 039808          295 WPSLEYVSFYDCPRLKNIGLGSNLKHSVMEIKA  327 (358)
Q Consensus       295 ~~~L~~L~i~~C~~L~~lP~~~~~~~~L~~~~~  327 (358)
                      +++|++|++++| +++.+|. +..+++|+.++.
T Consensus       350 l~~L~~L~l~~N-~l~~l~~-l~~l~~L~~L~L  380 (384)
T d2omza2         350 LTNINWLSAGHN-QISDLTP-LANLTRITQLGL  380 (384)
T ss_dssp             CTTCCEEECCSS-CCCBCGG-GTTCTTCSEEEC
T ss_pred             CCCCCEEECCCC-cCCCChh-hccCCCCCEeeC
Confidence            889999999887 5787764 556778877754

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=99.48  E-value=6.2e-14  Score=124.94  Aligned_cols=245  Identities=16%  Similarity=0.121  Sum_probs=119.1

Q ss_pred             cceeccCCCC------ccCCchhhcCccccEEEeeecCCCcceecccchhhhhhcCCCCCceEEEEccCchhHHHHHhhh
Q 039808            6 NVEYVKMPPQ------LISSGIISRLHALKTLSIVVYPGDKRWYKDVKSVVLEVCNLTELSSLCFHFPEIKLLELFLQRC   79 (358)
Q Consensus         6 ~L~~l~L~~~------~ip~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~~~~~~l~~l~~~~~~~   79 (358)
                      +++.++|++.      .+|+. +++|++||+|++++++.+.      ..++.+++++++|++|+++.+.+..++..    
T Consensus        51 ~v~~L~L~~~~l~g~~~lp~~-l~~L~~L~~L~Ls~~N~l~------g~iP~~i~~L~~L~~L~Ls~N~l~~~~~~----  119 (313)
T d1ogqa_          51 RVNNLDLSGLNLPKPYPIPSS-LANLPYLNFLYIGGINNLV------GPIPPAIAKLTQLHYLYITHTNVSGAIPD----  119 (313)
T ss_dssp             CEEEEEEECCCCSSCEECCGG-GGGCTTCSEEEEEEETTEE------SCCCGGGGGCTTCSEEEEEEECCEEECCG----
T ss_pred             EEEEEECCCCCCCCCCCCChH-HhcCccccccccccccccc------cccccccccccccchhhhccccccccccc----
Confidence            4666666651      35666 4788888888888755442      34567788888888888877765543210    


Q ss_pred             ccccccccceEEEEEeCccccccccCCcccccccccCCceEEeeCCC---CChHHHHhhccCccEEEeccCCCCCccCcc
Q 039808           80 VAWNAQCLTEFRIVVGHDIKNIVSRVPDAVAFDYNKQGKCLRFINGE---NIPDAVLQILACCTAFYLDNHLHINSLSDF  156 (358)
Q Consensus        80 ~~~~~~~L~~l~i~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~---~~~~~~~~~l~~L~~L~l~~~~~~~~l~~~  156 (358)
                                                    .+.....|+.+.+..+.   .++. ....++.++.+++.++.....++. 
T Consensus       120 ------------------------------~~~~~~~L~~l~l~~N~~~~~~p~-~l~~l~~L~~l~l~~n~l~~~ip~-  167 (313)
T d1ogqa_         120 ------------------------------FLSQIKTLVTLDFSYNALSGTLPP-SISSLPNLVGITFDGNRISGAIPD-  167 (313)
T ss_dssp             ------------------------------GGGGCTTCCEEECCSSEEESCCCG-GGGGCTTCCEEECCSSCCEEECCG-
T ss_pred             ------------------------------cccchhhhcccccccccccccCch-hhccCcccceeecccccccccccc-
Confidence                                          11112233334333321   1121 223355555555555522223333 


Q ss_pred             cccCccCC-cEEEeecCCCceEecCCCCccccCCCccceeecccccccccccccccCCCcCccccEEeEecCCCccccCc
Q 039808          157 GVRSINGL-KFCIISECPKIETVVDGKELTTVIFPSLENLSIHHLWNLTHICEGSVPNGSFARLRILSVHACPKLKFVFS  235 (358)
Q Consensus       157 ~l~~l~~L-~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~  235 (358)
                      .+..+..+ +.+.++.+. +.......   ...+ ....+.+.++.....+   +...+.+++++.+++.++. +...+ 
T Consensus       168 ~~~~l~~l~~~l~~~~n~-l~~~~~~~---~~~l-~~~~l~l~~~~~~~~~---~~~~~~~~~l~~l~~~~~~-l~~~~-  237 (313)
T d1ogqa_         168 SYGSFSKLFTSMTISRNR-LTGKIPPT---FANL-NLAFVDLSRNMLEGDA---SVLFGSDKNTQKIHLAKNS-LAFDL-  237 (313)
T ss_dssp             GGGCCCTTCCEEECCSSE-EEEECCGG---GGGC-CCSEEECCSSEEEECC---GGGCCTTSCCSEEECCSSE-ECCBG-
T ss_pred             cccccccccccccccccc-cccccccc---cccc-cccccccccccccccc---ccccccccccccccccccc-ccccc-
Confidence            24444443 445444432 22111110   1111 2223333333322222   1223345566666665543 22211 


Q ss_pred             hhhhccCCCccEEEEecCCccccccccccccccccccCCCcceeccccccccc-cccCC-CCCCccEEeeeCCcCCCcc
Q 039808          236 SFMIHFMSNLEDLTVEDCPAIEEIISEGEIIDSGCTALPRLKKLTLHYLPGLV-TIWSS-AWPSLEYVSFYDCPRLKNI  312 (358)
Q Consensus       236 ~~~l~~l~~L~~L~i~~c~~l~~i~~~~~~~~~~~~~l~~L~~L~l~~c~~L~-~~~~~-~~~~L~~L~i~~C~~L~~l  312 (358)
                       +.++.+++|+.|+++++.--..+|       ..++.+++|+.|+++++ +++ .+|.. .+++|+.+++.+++.+...
T Consensus       238 -~~~~~~~~L~~L~Ls~N~l~g~iP-------~~l~~L~~L~~L~Ls~N-~l~g~iP~~~~L~~L~~l~l~~N~~l~g~  307 (313)
T d1ogqa_         238 -GKVGLSKNLNGLDLRNNRIYGTLP-------QGLTQLKFLHSLNVSFN-NLCGEIPQGGNLQRFDVSAYANNKCLCGS  307 (313)
T ss_dssp             -GGCCCCTTCCEEECCSSCCEECCC-------GGGGGCTTCCEEECCSS-EEEEECCCSTTGGGSCGGGTCSSSEEEST
T ss_pred             -cccccccccccccCccCeecccCC-------hHHhCCCCCCEEECcCC-cccccCCCcccCCCCCHHHhCCCccccCC
Confidence             224455666666666654333444       34556666666666554 344 44443 5566666666666544443

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.44  E-value=1.9e-12  Score=117.85  Aligned_cols=165  Identities=14%  Similarity=0.221  Sum_probs=103.2

Q ss_pred             hhccCccEEEeccCCCCCccCcccccCccCCcEEEeecCCCceEecCCCCccccCCCccceeecccccccccccccccCC
Q 039808          134 QILACCTAFYLDNHLHINSLSDFGVRSINGLKFCIISECPKIETVVDGKELTTVIFPSLENLSIHHLWNLTHICEGSVPN  213 (358)
Q Consensus       134 ~~l~~L~~L~l~~~~~~~~l~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~  213 (358)
                      ..+++++.+.+.++ .+..+.  +...+++|++|++++|. +..+ +.    ...+++|+.|.+.++. +..+    ...
T Consensus       194 ~~l~~~~~l~l~~n-~i~~~~--~~~~~~~L~~L~l~~n~-l~~~-~~----l~~l~~L~~L~l~~n~-l~~~----~~~  259 (384)
T d2omza2         194 AKLTNLESLIATNN-QISDIT--PLGILTNLDELSLNGNQ-LKDI-GT----LASLTNLTDLDLANNQ-ISNL----APL  259 (384)
T ss_dssp             GGCTTCSEEECCSS-CCCCCG--GGGGCTTCCEEECCSSC-CCCC-GG----GGGCTTCSEEECCSSC-CCCC----GGG
T ss_pred             ccccccceeeccCC-ccCCCC--cccccCCCCEEECCCCC-CCCc-ch----hhcccccchhccccCc-cCCC----Ccc
Confidence            34556666666665 444443  24556677777776663 2222 11    3456677777776653 2222    123


Q ss_pred             CcCccccEEeEecCCCccccCchhhhccCCCccEEEEecCCccccccccccccccccccCCCcceeccccccccccccCC
Q 039808          214 GSFARLRILSVHACPKLKFVFSSFMIHFMSNLEDLTVEDCPAIEEIISEGEIIDSGCTALPRLKKLTLHYLPGLVTIWSS  293 (358)
Q Consensus       214 ~~~~~L~~L~l~~c~~l~~l~~~~~l~~l~~L~~L~i~~c~~l~~i~~~~~~~~~~~~~l~~L~~L~l~~c~~L~~~~~~  293 (358)
                      +.+++|++|+++++. +..+   ..+..++.++.+.+..+ .+..+.        ....+++++.|+++++ +++.++.-
T Consensus       260 ~~~~~L~~L~l~~~~-l~~~---~~~~~~~~l~~l~~~~n-~l~~~~--------~~~~~~~l~~L~ls~n-~l~~l~~l  325 (384)
T d2omza2         260 SGLTKLTELKLGANQ-ISNI---SPLAGLTALTNLELNEN-QLEDIS--------PISNLKNLTYLTLYFN-NISDISPV  325 (384)
T ss_dssp             TTCTTCSEEECCSSC-CCCC---GGGTTCTTCSEEECCSS-CCSCCG--------GGGGCTTCSEEECCSS-CCSCCGGG
T ss_pred             cccccCCEeeccCcc-cCCC---Ccccccccccccccccc-cccccc--------ccchhcccCeEECCCC-CCCCCccc
Confidence            455677777776543 3333   12345666677766654 222222        3667889999999876 67777544


Q ss_pred             -CCCCccEEeeeCCcCCCccCCCCCCCCCeeEEEec
Q 039808          294 -AWPSLEYVSFYDCPRLKNIGLGSNLKHSVMEIKAE  328 (358)
Q Consensus       294 -~~~~L~~L~i~~C~~L~~lP~~~~~~~~L~~~~~~  328 (358)
                       .+++|++|++++| +++.+| .+..+++|+.++..
T Consensus       326 ~~l~~L~~L~L~~n-~l~~l~-~l~~l~~L~~L~l~  359 (384)
T d2omza2         326 SSLTKLQRLFFANN-KVSDVS-SLANLTNINWLSAG  359 (384)
T ss_dssp             GGCTTCCEEECCSS-CCCCCG-GGGGCTTCCEEECC
T ss_pred             ccCCCCCEEECCCC-CCCCCh-hHcCCCCCCEEECC
Confidence             8999999999999 688887 46678999998775

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.34  E-value=6.4e-14  Score=123.23  Aligned_cols=182  Identities=12%  Similarity=0.079  Sum_probs=104.2

Q ss_pred             CCceEEeeCCCCChH---HHHhhccCccEEEeccCCCCCccCcccccCccCCcEEEeecCCCceEecCCCCccccCCCcc
Q 039808          116 QGKCLRFINGENIPD---AVLQILACCTAFYLDNHLHINSLSDFGVRSINGLKFCIISECPKIETVVDGKELTTVIFPSL  192 (358)
Q Consensus       116 ~L~~L~l~~~~~~~~---~~~~~l~~L~~L~l~~~~~~~~l~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L  192 (358)
                      ++++|++.++.-...   .+....++|++|.+.+| .+.......++.+++|++|++++|..+....-  ..-...+++|
T Consensus        47 ~L~~LdLs~~~i~~~~l~~l~~~c~~L~~L~L~~~-~l~~~~~~~l~~~~~L~~L~Ls~c~~itd~~l--~~l~~~~~~L  123 (284)
T d2astb2          47 RVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGL-RLSDPIVNTLAKNSNLVRLNLSGCSGFSEFAL--QTLLSSCSRL  123 (284)
T ss_dssp             CCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTC-BCCHHHHHHHTTCTTCSEEECTTCBSCCHHHH--HHHHHHCTTC
T ss_pred             CCCEEECCCCccCHHHHHHHHHhCCCccccccccc-CCCcHHHHHHhcCCCCcCcccccccccccccc--chhhHHHHhc
Confidence            667777765532222   23445677777777777 44332222466777788888877766542100  0002346778


Q ss_pred             ceeecccccccccccccccCCCcCccccEEeEecCC-CccccCchhhhccCCCccEEEEecCCccccccccccccccccc
Q 039808          193 ENLSIHHLWNLTHICEGSVPNGSFARLRILSVHACP-KLKFVFSSFMIHFMSNLEDLTVEDCPAIEEIISEGEIIDSGCT  271 (358)
Q Consensus       193 ~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~-~l~~l~~~~~l~~l~~L~~L~i~~c~~l~~i~~~~~~~~~~~~  271 (358)
                      ++|++++|..+.............++|+.|++.+|. .++......++.++++|++|++++|..+.....      ..+.
T Consensus       124 ~~L~ls~c~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~i~~~~l~~l~~~~~~L~~L~L~~~~~itd~~~------~~l~  197 (284)
T d2astb2         124 DELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCF------QEFF  197 (284)
T ss_dssp             CEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGG------GGGG
T ss_pred             cccccccccccccccchhhhcccccccchhhhcccccccccccccccccccccccccccccccCCCchhh------hhhc
Confidence            888887776654311100001124677788777764 344322233455677788888877766643210      2355


Q ss_pred             cCCCcceeccccccccccccCC---CCCCccEEeeeCC
Q 039808          272 ALPRLKKLTLHYLPGLVTIWSS---AWPSLEYVSFYDC  306 (358)
Q Consensus       272 ~l~~L~~L~l~~c~~L~~~~~~---~~~~L~~L~i~~C  306 (358)
                      .+|+|++|++++|+.+++-...   .+++|+.|++++|
T Consensus       198 ~~~~L~~L~L~~C~~i~~~~l~~L~~~~~L~~L~l~~~  235 (284)
T d2astb2         198 QLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI  235 (284)
T ss_dssp             GCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS
T ss_pred             ccCcCCEEECCCCCCCChHHHHHHhcCCCCCEEeeeCC
Confidence            6777888888777766654333   5777888887777

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=99.32  E-value=5.4e-12  Score=112.07  Aligned_cols=192  Identities=13%  Similarity=0.022  Sum_probs=123.8

Q ss_pred             ccccccCCceEEeeCCC--CChHHHHhhccCccEEEeccCCCCCccCcccccCccCCcEEEeecCCCceEecCCCCcccc
Q 039808          110 AFDYNKQGKCLRFINGE--NIPDAVLQILACCTAFYLDNHLHINSLSDFGVRSINGLKFCIISECPKIETVVDGKELTTV  187 (358)
Q Consensus       110 ~l~~~~~L~~L~l~~~~--~~~~~~~~~l~~L~~L~l~~~~~~~~l~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~  187 (358)
                      ++..+.+|++|++.++.  +.+......+.+|+.+++..+.....++. .+++++.|+.++++++.....+++.    ..
T Consensus        96 ~i~~L~~L~~L~Ls~N~l~~~~~~~~~~~~~L~~l~l~~N~~~~~~p~-~l~~l~~L~~l~l~~n~l~~~ip~~----~~  170 (313)
T d1ogqa_          96 AIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPP-SISSLPNLVGITFDGNRISGAIPDS----YG  170 (313)
T ss_dssp             GGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEESCCCG-GGGGCTTCCEEECCSSCCEEECCGG----GG
T ss_pred             ccccccccchhhhccccccccccccccchhhhcccccccccccccCch-hhccCcccceeeccccccccccccc----cc
Confidence            34445567777776653  33444556688999999988844445554 5899999999999998665555444    34


Q ss_pred             CCCcc-ceeecccccccccccccccCCCcCccccEEeEecCCCccccCchhhhccCCCccEEEEecCCcccccccccccc
Q 039808          188 IFPSL-ENLSIHHLWNLTHICEGSVPNGSFARLRILSVHACPKLKFVFSSFMIHFMSNLEDLTVEDCPAIEEIISEGEII  266 (358)
Q Consensus       188 ~l~~L-~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~l~~l~~L~~L~i~~c~~l~~i~~~~~~~  266 (358)
                      .+..+ +.+.+.+. .+....  +...+.+ ....+++..+......  +.....+++|+.+++.++..-..++      
T Consensus       171 ~l~~l~~~l~~~~n-~l~~~~--~~~~~~l-~~~~l~l~~~~~~~~~--~~~~~~~~~l~~l~~~~~~l~~~~~------  238 (313)
T d1ogqa_         171 SFSKLFTSMTISRN-RLTGKI--PPTFANL-NLAFVDLSRNMLEGDA--SVLFGSDKNTQKIHLAKNSLAFDLG------  238 (313)
T ss_dssp             CCCTTCCEEECCSS-EEEEEC--CGGGGGC-CCSEEECCSSEEEECC--GGGCCTTSCCSEEECCSSEECCBGG------
T ss_pred             cccccccccccccc-cccccc--ccccccc-cccccccccccccccc--ccccccccccccccccccccccccc------
Confidence            45554 56666554 333221  1111122 3345555554332222  3455788999999999875443433      


Q ss_pred             ccccccCCCcceeccccccccc-cccCC--CCCCccEEeeeCCcCCC-ccCCCCCCCCCee
Q 039808          267 DSGCTALPRLKKLTLHYLPGLV-TIWSS--AWPSLEYVSFYDCPRLK-NIGLGSNLKHSVM  323 (358)
Q Consensus       267 ~~~~~~l~~L~~L~l~~c~~L~-~~~~~--~~~~L~~L~i~~C~~L~-~lP~~~~~~~~L~  323 (358)
                        ..+.+++|+.|+++++ +++ .+|..  .+++|++|+++++. +. .+|.. ..+++|+
T Consensus       239 --~~~~~~~L~~L~Ls~N-~l~g~iP~~l~~L~~L~~L~Ls~N~-l~g~iP~~-~~L~~L~  294 (313)
T d1ogqa_         239 --KVGLSKNLNGLDLRNN-RIYGTLPQGLTQLKFLHSLNVSFNN-LCGEIPQG-GNLQRFD  294 (313)
T ss_dssp             --GCCCCTTCCEEECCSS-CCEECCCGGGGGCTTCCEEECCSSE-EEEECCCS-TTGGGSC
T ss_pred             --ccccccccccccCccC-eecccCChHHhCCCCCCEEECcCCc-ccccCCCc-ccCCCCC
Confidence              4677899999999887 555 67776  89999999999985 55 78864 3444444

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.29  E-value=3.5e-11  Score=106.23  Aligned_cols=238  Identities=15%  Similarity=0.152  Sum_probs=156.7

Q ss_pred             CCCceEEEEccCchhHHH-HHhhhccccccccceEEEEEeCccccccccCCcccccccccCCceEEeeCCC--CChHHHH
Q 039808           57 TELSSLCFHFPEIKLLEL-FLQRCVAWNAQCLTEFRIVVGHDIKNIVSRVPDAVAFDYNKQGKCLRFINGE--NIPDAVL  133 (358)
Q Consensus        57 ~~L~~L~~~~~~l~~l~~-~~~~~~~~~~~~L~~l~i~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~--~~~~~~~  133 (358)
                      +++++|+++.+.++.++. .+.     .+.+|+.+.+.   .. . +...+. ..+..+..++.|.+.++.  .++.   
T Consensus        31 ~~l~~L~Ls~N~i~~l~~~~f~-----~l~~L~~L~l~---~n-~-~~~i~~-~~f~~l~~L~~L~l~~n~l~~l~~---   96 (305)
T d1xkua_          31 PDTALLDLQNNKITEIKDGDFK-----NLKNLHTLILI---NN-K-ISKISP-GAFAPLVKLERLYLSKNQLKELPE---   96 (305)
T ss_dssp             TTCCEEECCSSCCCCBCTTTTT-----TCTTCCEEECC---SS-C-CCCBCT-TTTTTCTTCCEEECCSSCCSBCCS---
T ss_pred             CCCCEEECcCCcCCCcChhHhh-----ccccccccccc---cc-c-ccccch-hhhhCCCccCEecccCCccCcCcc---
Confidence            589999998888888763 122     45667766541   11 0 122211 356677788888887763  3333   


Q ss_pred             hhccCccEEEeccCCCCCccCcccccCccCCcEEEeecCCCceEecCCCCccccCCCccceeecccccccccccccccCC
Q 039808          134 QILACCTAFYLDNHLHINSLSDFGVRSINGLKFCIISECPKIETVVDGKELTTVIFPSLENLSIHHLWNLTHICEGSVPN  213 (358)
Q Consensus       134 ~~l~~L~~L~l~~~~~~~~l~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~  213 (358)
                      .....++.|....+ .+..+....+.....+..+....+......  ........+++|+.+.+.++. +..+     ..
T Consensus        97 ~~~~~l~~L~~~~n-~l~~l~~~~~~~~~~~~~l~~~~n~~~~~~--~~~~~~~~l~~L~~l~l~~n~-l~~l-----~~  167 (305)
T d1xkua_          97 KMPKTLQELRVHEN-EITKVRKSVFNGLNQMIVVELGTNPLKSSG--IENGAFQGMKKLSYIRIADTN-ITTI-----PQ  167 (305)
T ss_dssp             SCCTTCCEEECCSS-CCCBBCHHHHTTCTTCCEEECCSSCCCGGG--BCTTGGGGCTTCCEEECCSSC-CCSC-----CS
T ss_pred             chhhhhhhhhcccc-chhhhhhhhhhccccccccccccccccccC--CCccccccccccCccccccCC-cccc-----Cc
Confidence            23456778877776 566665545566677777777665432211  111124456788888887764 3332     13


Q ss_pred             CcCccccEEeEecCCCccccCchhhhccCCCccEEEEecCCccccccccccccccccccCCCcceeccccccccccccCC
Q 039808          214 GSFARLRILSVHACPKLKFVFSSFMIHFMSNLEDLTVEDCPAIEEIISEGEIIDSGCTALPRLKKLTLHYLPGLVTIWSS  293 (358)
Q Consensus       214 ~~~~~L~~L~l~~c~~l~~l~~~~~l~~l~~L~~L~i~~c~~l~~i~~~~~~~~~~~~~l~~L~~L~l~~c~~L~~~~~~  293 (358)
                      ..+++|++|++.++..... .+ ..+..+++++.|.++++ .+..++.      ..+..+++|++|+++++ .++.++..
T Consensus       168 ~~~~~L~~L~l~~n~~~~~-~~-~~~~~~~~l~~L~~s~n-~l~~~~~------~~~~~l~~L~~L~L~~N-~L~~lp~~  237 (305)
T d1xkua_         168 GLPPSLTELHLDGNKITKV-DA-ASLKGLNNLAKLGLSFN-SISAVDN------GSLANTPHLRELHLNNN-KLVKVPGG  237 (305)
T ss_dssp             SCCTTCSEEECTTSCCCEE-CT-GGGTTCTTCCEEECCSS-CCCEECT------TTGGGSTTCCEEECCSS-CCSSCCTT
T ss_pred             ccCCccCEEECCCCcCCCC-Ch-hHhhccccccccccccc-ccccccc------ccccccccceeeecccc-cccccccc
Confidence            3578999999988754443 23 35678899999999987 5555431      34677899999999988 78989877


Q ss_pred             --CCCCccEEeeeCCcCCCccCCCC-------CCCCCeeEEEec
Q 039808          294 --AWPSLEYVSFYDCPRLKNIGLGS-------NLKHSVMEIKAE  328 (358)
Q Consensus       294 --~~~~L~~L~i~~C~~L~~lP~~~-------~~~~~L~~~~~~  328 (358)
                        .+++|++|+++++ +++.++...       ....+|+.+.-.
T Consensus       238 l~~l~~L~~L~Ls~N-~i~~i~~~~f~~~~~~~~~~~L~~L~L~  280 (305)
T d1xkua_         238 LADHKYIQVVYLHNN-NISAIGSNDFCPPGYNTKKASYSGVSLF  280 (305)
T ss_dssp             TTTCSSCCEEECCSS-CCCCCCTTSSSCSSCCTTSCCCSEEECC
T ss_pred             cccccCCCEEECCCC-ccCccChhhccCcchhcccCCCCEEECC
Confidence              7999999999997 599987542       234567777553

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.26  E-value=2.1e-11  Score=105.69  Aligned_cols=52  Identities=21%  Similarity=0.192  Sum_probs=25.3

Q ss_pred             cCCCcceeccccccccccccCC---CCCCccEEeeeCCcCCCccCCCCCCCCCeeEE
Q 039808          272 ALPRLKKLTLHYLPGLVTIWSS---AWPSLEYVSFYDCPRLKNIGLGSNLKHSVMEI  325 (358)
Q Consensus       272 ~l~~L~~L~l~~c~~L~~~~~~---~~~~L~~L~i~~C~~L~~lP~~~~~~~~L~~~  325 (358)
                      .+++|+.++++++ +++.++..   .+++|++|+++++. ++.+|.+....++|+.+
T Consensus       146 ~l~~l~~l~l~~N-~l~~~~~~~~~~l~~L~~L~Ls~N~-L~~lp~~~~~~~~L~~L  200 (266)
T d1p9ag_         146 PTPKLEKLSLANN-NLTELPAGLLNGLENLDTLLLQENS-LYTIPKGFFGSHLLPFA  200 (266)
T ss_dssp             TCTTCCEEECTTS-CCSCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCCCSEE
T ss_pred             ccccchhcccccc-cccccCccccccccccceeecccCC-CcccChhHCCCCCCCEE
Confidence            3445555555433 44444433   34555555555542 55555554444455544

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.23  E-value=4.2e-11  Score=99.12  Aligned_cols=160  Identities=16%  Similarity=0.201  Sum_probs=107.1

Q ss_pred             hccCccEEEeccCCCCCccCcccccCccCCcEEEeecCCCceEecCCCCccccCCCccceeecccccccccccccccCCC
Q 039808          135 ILACCTAFYLDNHLHINSLSDFGVRSINGLKFCIISECPKIETVVDGKELTTVIFPSLENLSIHHLWNLTHICEGSVPNG  214 (358)
Q Consensus       135 ~l~~L~~L~l~~~~~~~~l~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~  214 (358)
                      .+.+++.|++.++ ++.++.  .++.+++|++|++++| .+..+.     +...+++|++|.++++.. ..+    ...+
T Consensus        38 ~l~~l~~L~l~~~-~i~~l~--~l~~l~nL~~L~Ls~N-~l~~~~-----~l~~l~~L~~L~l~~n~~-~~~----~~l~  103 (199)
T d2omxa2          38 DLDQVTTLQADRL-GIKSID--GVEYLNNLTQINFSNN-QLTDIT-----PLKNLTKLVDILMNNNQI-ADI----TPLA  103 (199)
T ss_dssp             HHTTCCEEECTTS-CCCCCT--TGGGCTTCCEEECCSS-CCCCCG-----GGTTCTTCCEEECCSSCC-CCC----GGGT
T ss_pred             HhcCCCEEECCCC-CCCCcc--ccccCCCcCcCccccc-cccCcc-----cccCCccccccccccccc-ccc----cccc
Confidence            3567777777777 666665  3677888888888877 343331     145677888888877643 222    1244


Q ss_pred             cCccccEEeEecCCCccccCchhhhccCCCccEEEEecCCccccccccccccccccccCCCcceeccccccccccccCC-
Q 039808          215 SFARLRILSVHACPKLKFVFSSFMIHFMSNLEDLTVEDCPAIEEIISEGEIIDSGCTALPRLKKLTLHYLPGLVTIWSS-  293 (358)
Q Consensus       215 ~~~~L~~L~l~~c~~l~~l~~~~~l~~l~~L~~L~i~~c~~l~~i~~~~~~~~~~~~~l~~L~~L~l~~c~~L~~~~~~-  293 (358)
                      .+++|+.|++.+|.... .   ..+..+++|+.|+++++. +..++        ....+++|+.|++.++ +++.++.- 
T Consensus       104 ~l~~L~~L~l~~~~~~~-~---~~~~~l~~L~~L~l~~n~-l~~~~--------~l~~~~~L~~L~l~~n-~l~~l~~l~  169 (199)
T d2omxa2         104 NLTNLTGLTLFNNQITD-I---DPLKNLTNLNRLELSSNT-ISDIS--------ALSGLTSLQQLNFSSN-QVTDLKPLA  169 (199)
T ss_dssp             TCTTCSEEECCSSCCCC-C---GGGTTCTTCSEEECCSSC-CCCCG--------GGTTCTTCSEEECCSS-CCCCCGGGT
T ss_pred             ccccccccccccccccc-c---cccchhhhhHHhhhhhhh-hcccc--------cccccccccccccccc-cccCCcccc
Confidence            67888888888765433 2   235678888888888763 44433        3667888888888765 66766543 


Q ss_pred             CCCCccEEeeeCCcCCCccCCCCCCCCCeeE
Q 039808          294 AWPSLEYVSFYDCPRLKNIGLGSNLKHSVME  324 (358)
Q Consensus       294 ~~~~L~~L~i~~C~~L~~lP~~~~~~~~L~~  324 (358)
                      .+++|++|++++| +++.+|. +..+++|+.
T Consensus       170 ~l~~L~~L~ls~N-~i~~i~~-l~~L~~L~~  198 (199)
T d2omxa2         170 NLTTLERLDISSN-KVSDISV-LAKLTNLES  198 (199)
T ss_dssp             TCTTCCEEECCSS-CCCCCGG-GGGCTTCSE
T ss_pred             CCCCCCEEECCCC-CCCCCcc-ccCCCCCCc
Confidence            7888899998888 4777763 445666654

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.22  E-value=5.1e-11  Score=100.63  Aligned_cols=189  Identities=17%  Similarity=0.174  Sum_probs=101.8

Q ss_pred             hhcCccccEEEeeecCCCcceecccchhhhhhcCCCCCceEEEEccCchhHHHHHhhhccccccccceEEEEEeCccccc
Q 039808           22 ISRLHALKTLSIVVYPGDKRWYKDVKSVVLEVCNLTELSSLCFHFPEIKLLELFLQRCVAWNAQCLTEFRIVVGHDIKNI  101 (358)
Q Consensus        22 i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~~~~~~l~~l~~~~~~~~~~~~~~L~~l~i~~~~~~~~~  101 (358)
                      ...|.+|++|++.+ +.++       .+ ..+..+++|++|++..+.+..+.. +.     .+++++.+.          
T Consensus        37 ~~~l~~L~~L~l~~-~~i~-------~l-~~l~~l~~L~~L~ls~n~i~~~~~-l~-----~l~~l~~l~----------   91 (227)
T d1h6ua2          37 QADLDGITTLSAFG-TGVT-------TI-EGVQYLNNLIGLELKDNQITDLAP-LK-----NLTKITELE----------   91 (227)
T ss_dssp             HHHHHTCCEEECTT-SCCC-------CC-TTGGGCTTCCEEECCSSCCCCCGG-GT-----TCCSCCEEE----------
T ss_pred             HHHcCCcCEEECCC-CCCC-------cc-hhHhcCCCCcEeecCCceeecccc-cc-----ccccccccc----------
Confidence            46788999999988 3332       22 357889999999987666554421 11     233343333          


Q ss_pred             cccCCcccccccccCCceEEeeCCCCChHHHHhhccCccEEEeccCCCCCccCcccccCccCCcEEEeecCCCceEecCC
Q 039808          102 VSRVPDAVAFDYNKQGKCLRFINGENIPDAVLQILACCTAFYLDNHLHINSLSDFGVRSINGLKFCIISECPKIETVVDG  181 (358)
Q Consensus       102 ~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~l~~~~l~~l~~L~~L~l~~~~~~~~~~~~  181 (358)
                                          +.++..........+++|+.+.+.++ ....+.  .+...+.++.+.+.++......   
T Consensus        92 --------------------~~~n~~~~i~~l~~l~~L~~l~l~~~-~~~~~~--~~~~~~~~~~l~~~~~~~~~~~---  145 (227)
T d1h6ua2          92 --------------------LSGNPLKNVSAIAGLQSIKTLDLTST-QITDVT--PLAGLSNLQVLYLDLNQITNIS---  145 (227)
T ss_dssp             --------------------CCSCCCSCCGGGTTCTTCCEEECTTS-CCCCCG--GGTTCTTCCEEECCSSCCCCCG---
T ss_pred             --------------------cccccccccccccccccccccccccc-cccccc--hhccccchhhhhchhhhhchhh---
Confidence                                22221000011223455555555544 222222  2445556666666554322110   


Q ss_pred             CCccccCCCccceeecccccccccccccccCCCcCccccEEeEecCCCccccCchhhhccCCCccEEEEecCCccccccc
Q 039808          182 KELTTVIFPSLENLSIHHLWNLTHICEGSVPNGSFARLRILSVHACPKLKFVFSSFMIHFMSNLEDLTVEDCPAIEEIIS  261 (358)
Q Consensus       182 ~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~l~~l~~L~~L~i~~c~~l~~i~~  261 (358)
                         .....++|++|.+.++.....     ...+.+++|++|++++| +++.+   +.++.+++|++|++++| .+..++ 
T Consensus       146 ---~~~~~~~L~~L~l~~n~~~~~-----~~l~~l~~L~~L~Ls~n-~l~~l---~~l~~l~~L~~L~Ls~N-~lt~i~-  211 (227)
T d1h6ua2         146 ---PLAGLTNLQYLSIGNAQVSDL-----TPLANLSKLTTLKADDN-KISDI---SPLASLPNLIEVHLKNN-QISDVS-  211 (227)
T ss_dssp             ---GGGGCTTCCEEECCSSCCCCC-----GGGTTCTTCCEEECCSS-CCCCC---GGGGGCTTCCEEECTTS-CCCBCG-
T ss_pred             ---hhccccccccccccccccccc-----hhhcccccceecccCCC-ccCCC---hhhcCCCCCCEEECcCC-cCCCCc-
Confidence               133455666666655432111     11345677777777776 46654   22466777777777776 466554 


Q ss_pred             cccccccccccCCCcceeccc
Q 039808          262 EGEIIDSGCTALPRLKKLTLH  282 (358)
Q Consensus       262 ~~~~~~~~~~~l~~L~~L~l~  282 (358)
                             .+..+++|+.|+++
T Consensus       212 -------~l~~l~~L~~L~ls  225 (227)
T d1h6ua2         212 -------PLANTSNLFIVTLT  225 (227)
T ss_dssp             -------GGTTCTTCCEEEEE
T ss_pred             -------ccccCCCCCEEEee
Confidence                   35677777777764

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.20  E-value=1.1e-10  Score=98.61  Aligned_cols=187  Identities=14%  Similarity=0.182  Sum_probs=127.7

Q ss_pred             cccccccCCceEEeeCCC--CChHHHHhhccCccEEEeccCCCCCccCcccccCccCCcEEEeecCCCceEecCCCCccc
Q 039808          109 VAFDYNKQGKCLRFINGE--NIPDAVLQILACCTAFYLDNHLHINSLSDFGVRSINGLKFCIISECPKIETVVDGKELTT  186 (358)
Q Consensus       109 ~~l~~~~~L~~L~l~~~~--~~~~~~~~~l~~L~~L~l~~~~~~~~l~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~  186 (358)
                      .....+.+++.|.+.++.  .+ .+ ...+++|+.|++.++ .+..+.  ++.++++|+.+.+++|.. +.+ .    ..
T Consensus        35 ~~~~~l~~L~~L~l~~~~i~~l-~~-l~~l~~L~~L~ls~n-~i~~~~--~l~~l~~l~~l~~~~n~~-~~i-~----~l  103 (227)
T d1h6ua2          35 VTQADLDGITTLSAFGTGVTTI-EG-VQYLNNLIGLELKDN-QITDLA--PLKNLTKITELELSGNPL-KNV-S----AI  103 (227)
T ss_dssp             ECHHHHHTCCEEECTTSCCCCC-TT-GGGCTTCCEEECCSS-CCCCCG--GGTTCCSCCEEECCSCCC-SCC-G----GG
T ss_pred             CCHHHcCCcCEEECCCCCCCcc-hh-HhcCCCCcEeecCCc-eeeccc--cccccccccccccccccc-ccc-c----cc
Confidence            344556677888877664  33 12 456888999988887 566555  378888999998887743 333 1    14


Q ss_pred             cCCCccceeecccccccccccccccCCCcCccccEEeEecCCCccccCchhhhccCCCccEEEEecCCcccccccccccc
Q 039808          187 VIFPSLENLSIHHLWNLTHICEGSVPNGSFARLRILSVHACPKLKFVFSSFMIHFMSNLEDLTVEDCPAIEEIISEGEII  266 (358)
Q Consensus       187 ~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~l~~l~~L~~L~i~~c~~l~~i~~~~~~~  266 (358)
                      ..+++|+.+.+.++......     .....+.++.+.+..+. +...   ..+...++|+.|.+++|. +....      
T Consensus       104 ~~l~~L~~l~l~~~~~~~~~-----~~~~~~~~~~l~~~~~~-~~~~---~~~~~~~~L~~L~l~~n~-~~~~~------  167 (227)
T d1h6ua2         104 AGLQSIKTLDLTSTQITDVT-----PLAGLSNLQVLYLDLNQ-ITNI---SPLAGLTNLQYLSIGNAQ-VSDLT------  167 (227)
T ss_dssp             TTCTTCCEEECTTSCCCCCG-----GGTTCTTCCEEECCSSC-CCCC---GGGGGCTTCCEEECCSSC-CCCCG------
T ss_pred             cccccccccccccccccccc-----hhccccchhhhhchhhh-hchh---hhhccccccccccccccc-cccch------
Confidence            56788888888776543221     12345778888887664 3322   234678889999988763 33322      


Q ss_pred             ccccccCCCcceeccccccccccccCC-CCCCccEEeeeCCcCCCccCCCCCCCCCeeEEEe
Q 039808          267 DSGCTALPRLKKLTLHYLPGLVTIWSS-AWPSLEYVSFYDCPRLKNIGLGSNLKHSVMEIKA  327 (358)
Q Consensus       267 ~~~~~~l~~L~~L~l~~c~~L~~~~~~-~~~~L~~L~i~~C~~L~~lP~~~~~~~~L~~~~~  327 (358)
                        .++.+++|+.|+++++ ++++++.- .+++|++|++++| +++.+|. +..++.|+.+.-
T Consensus       168 --~l~~l~~L~~L~Ls~n-~l~~l~~l~~l~~L~~L~Ls~N-~lt~i~~-l~~l~~L~~L~l  224 (227)
T d1h6ua2         168 --PLANLSKLTTLKADDN-KISDISPLASLPNLIEVHLKNN-QISDVSP-LANTSNLFIVTL  224 (227)
T ss_dssp             --GGTTCTTCCEEECCSS-CCCCCGGGGGCTTCCEEECTTS-CCCBCGG-GTTCTTCCEEEE
T ss_pred             --hhcccccceecccCCC-ccCCChhhcCCCCCCEEECcCC-cCCCCcc-cccCCCCCEEEe
Confidence              3678899999999877 68877654 7899999999998 5888874 557778877754

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.20  E-value=1.9e-10  Score=99.51  Aligned_cols=172  Identities=17%  Similarity=0.114  Sum_probs=131.0

Q ss_pred             cCCceEEeeCCC--CChHHHHhhccCccEEEeccCCCCCccCcccccCccCCcEEEeecCCCceEecCCCCccccCCCcc
Q 039808          115 KQGKCLRFINGE--NIPDAVLQILACCTAFYLDNHLHINSLSDFGVRSINGLKFCIISECPKIETVVDGKELTTVIFPSL  192 (358)
Q Consensus       115 ~~L~~L~l~~~~--~~~~~~~~~l~~L~~L~l~~~~~~~~l~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L  192 (358)
                      +.++.|.+.++.  .++...+..+++|+.|++.++ .+..++.  ++.+++|++|++++|. +...+..    ...+++|
T Consensus        31 ~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~L~~N-~l~~l~~--~~~l~~L~~L~Ls~N~-l~~~~~~----~~~l~~L  102 (266)
T d1p9ag_          31 KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRA-ELTKLQV--DGTLPVLGTLDLSHNQ-LQSLPLL----GQTLPAL  102 (266)
T ss_dssp             TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTS-CCCEEEC--CSCCTTCCEEECCSSC-CSSCCCC----TTTCTTC
T ss_pred             cCCCEEECcCCcCCCcCHHHhhccccccccccccc-ccccccc--cccccccccccccccc-ccccccc----ccccccc
Confidence            478899998874  556666677999999999999 7888764  6789999999999984 4433232    5678899


Q ss_pred             ceeecccccccccccccccCCCcCccccEEeEecCCCccccCchhhhccCCCccEEEEecCCcccccccccccccccccc
Q 039808          193 ENLSIHHLWNLTHICEGSVPNGSFARLRILSVHACPKLKFVFSSFMIHFMSNLEDLTVEDCPAIEEIISEGEIIDSGCTA  272 (358)
Q Consensus       193 ~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~l~~l~~L~~L~i~~c~~l~~i~~~~~~~~~~~~~  272 (358)
                      +.|+++++...+. .  ......++++++|.+.++ .+..+.+ ..+..+++|+.++++++ .+..++.      ..+..
T Consensus       103 ~~L~l~~~~~~~~-~--~~~~~~l~~l~~L~l~~n-~l~~l~~-~~~~~l~~l~~l~l~~N-~l~~~~~------~~~~~  170 (266)
T d1p9ag_         103 TVLDVSFNRLTSL-P--LGALRGLGELQELYLKGN-ELKTLPP-GLLTPTPKLEKLSLANN-NLTELPA------GLLNG  170 (266)
T ss_dssp             CEEECCSSCCCCC-C--SSTTTTCTTCCEEECTTS-CCCCCCT-TTTTTCTTCCEEECTTS-CCSCCCT------TTTTT
T ss_pred             cccccccccccee-e--cccccccccccccccccc-ccceecc-ccccccccchhcccccc-cccccCc------ccccc
Confidence            9999988754332 2  222356789999999886 4555533 45678999999999986 5555541      24677


Q ss_pred             CCCcceeccccccccccccCC--CCCCccEEeeeCCc
Q 039808          273 LPRLKKLTLHYLPGLVTIWSS--AWPSLEYVSFYDCP  307 (358)
Q Consensus       273 l~~L~~L~l~~c~~L~~~~~~--~~~~L~~L~i~~C~  307 (358)
                      +++|+.|+++++ .++.+|..  .+++|+.|+++|.|
T Consensus       171 l~~L~~L~Ls~N-~L~~lp~~~~~~~~L~~L~L~~Np  206 (266)
T d1p9ag_         171 LENLDTLLLQEN-SLYTIPKGFFGSHLLPFAFLHGNP  206 (266)
T ss_dssp             CTTCCEEECCSS-CCCCCCTTTTTTCCCSEEECCSCC
T ss_pred             ccccceeecccC-CCcccChhHCCCCCCCEEEecCCC
Confidence            999999999887 69999887  88999999999875

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.15  E-value=1.6e-10  Score=96.41  Aligned_cols=160  Identities=13%  Similarity=0.161  Sum_probs=71.3

Q ss_pred             ccCccEEEeccCCCCCccCcccccCccCCcEEEeecCCCceEecCCCCccccCCCccceeecccccccccccccccCCCc
Q 039808          136 LACCTAFYLDNHLHINSLSDFGVRSINGLKFCIISECPKIETVVDGKELTTVIFPSLENLSIHHLWNLTHICEGSVPNGS  215 (358)
Q Consensus       136 l~~L~~L~l~~~~~~~~l~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~  215 (358)
                      +.+++.|.+.++ .+..+.  .++.+++|++|++++|. +..+. .    ...+++|+.|+++++ .++.++    ....
T Consensus        45 L~~L~~L~l~~~-~i~~l~--~l~~l~~L~~L~L~~n~-i~~l~-~----~~~l~~L~~L~l~~n-~i~~l~----~l~~  110 (210)
T d1h6ta2          45 LNSIDQIIANNS-DIKSVQ--GIQYLPNVTKLFLNGNK-LTDIK-P----LANLKNLGWLFLDEN-KVKDLS----SLKD  110 (210)
T ss_dssp             HHTCCEEECTTS-CCCCCT--TGGGCTTCCEEECCSSC-CCCCG-G----GTTCTTCCEEECCSS-CCCCGG----GGTT
T ss_pred             hcCccEEECcCC-CCCCch--hHhhCCCCCEEeCCCcc-ccCcc-c----cccCccccccccccc-cccccc----cccc
Confidence            344455555444 444443  24455555555555542 22221 1    233455555555443 222221    1233


Q ss_pred             CccccEEeEecCCCccccCchhhhccCCCccEEEEecCCccccccccccccccccccCCCcceeccccccccccccCC-C
Q 039808          216 FARLRILSVHACPKLKFVFSSFMIHFMSNLEDLTVEDCPAIEEIISEGEIIDSGCTALPRLKKLTLHYLPGLVTIWSS-A  294 (358)
Q Consensus       216 ~~~L~~L~l~~c~~l~~l~~~~~l~~l~~L~~L~i~~c~~l~~i~~~~~~~~~~~~~l~~L~~L~l~~c~~L~~~~~~-~  294 (358)
                      +++|+.|++.+|.. ..+   ..+.++++++.++++++. +....        ....+++|+.++++++ .++.++.- .
T Consensus       111 l~~L~~L~l~~~~~-~~~---~~l~~l~~l~~l~~~~n~-l~~~~--------~~~~l~~L~~l~l~~n-~l~~i~~l~~  176 (210)
T d1h6ta2         111 LKKLKSLSLEHNGI-SDI---NGLVHLPQLESLYLGNNK-ITDIT--------VLSRLTKLDTLSLEDN-QISDIVPLAG  176 (210)
T ss_dssp             CTTCCEEECTTSCC-CCC---GGGGGCTTCCEEECCSSC-CCCCG--------GGGGCTTCSEEECCSS-CCCCCGGGTT
T ss_pred             cccccccccccccc-ccc---cccccccccccccccccc-ccccc--------cccccccccccccccc-cccccccccC
Confidence            45555555555432 222   123445555555554432 22221        2334555555555544 34444322 5


Q ss_pred             CCCccEEeeeCCcCCCccCCCCCCCCCeeEE
Q 039808          295 WPSLEYVSFYDCPRLKNIGLGSNLKHSVMEI  325 (358)
Q Consensus       295 ~~~L~~L~i~~C~~L~~lP~~~~~~~~L~~~  325 (358)
                      +++|++|++++| .++.+| .+..+++|+.+
T Consensus       177 l~~L~~L~Ls~N-~i~~l~-~l~~l~~L~~L  205 (210)
T d1h6ta2         177 LTKLQNLYLSKN-HISDLR-ALAGLKNLDVL  205 (210)
T ss_dssp             CTTCCEEECCSS-CCCBCG-GGTTCTTCSEE
T ss_pred             CCCCCEEECCCC-CCCCCh-hhcCCCCCCEE
Confidence            555555655555 355554 23445555544

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.14  E-value=2e-10  Score=95.69  Aligned_cols=164  Identities=16%  Similarity=0.257  Sum_probs=122.8

Q ss_pred             ccccCCceEEeeCCC--CChHHHHhhccCccEEEeccCCCCCccCcccccCccCCcEEEeecCCCceEecCCCCccccCC
Q 039808          112 DYNKQGKCLRFINGE--NIPDAVLQILACCTAFYLDNHLHINSLSDFGVRSINGLKFCIISECPKIETVVDGKELTTVIF  189 (358)
Q Consensus       112 ~~~~~L~~L~l~~~~--~~~~~~~~~l~~L~~L~l~~~~~~~~l~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l  189 (358)
                      ..+..++.|.+.++.  .+. + .+.+++|+.|++.++ .+..++  +++.+++|+.|++++|. +..++ .    ...+
T Consensus        43 ~~L~~L~~L~l~~~~i~~l~-~-l~~l~~L~~L~L~~n-~i~~l~--~~~~l~~L~~L~l~~n~-i~~l~-~----l~~l  111 (210)
T d1h6ta2          43 NELNSIDQIIANNSDIKSVQ-G-IQYLPNVTKLFLNGN-KLTDIK--PLANLKNLGWLFLDENK-VKDLS-S----LKDL  111 (210)
T ss_dssp             HHHHTCCEEECTTSCCCCCT-T-GGGCTTCCEEECCSS-CCCCCG--GGTTCTTCCEEECCSSC-CCCGG-G----GTTC
T ss_pred             HHhcCccEEECcCCCCCCch-h-HhhCCCCCEEeCCCc-cccCcc--ccccCcccccccccccc-ccccc-c----cccc
Confidence            345578888887764  222 2 456999999999998 777776  37899999999999884 44442 2    4568


Q ss_pred             CccceeecccccccccccccccCCCcCccccEEeEecCCCccccCchhhhccCCCccEEEEecCCccccccccccccccc
Q 039808          190 PSLENLSIHHLWNLTHICEGSVPNGSFARLRILSVHACPKLKFVFSSFMIHFMSNLEDLTVEDCPAIEEIISEGEIIDSG  269 (358)
Q Consensus       190 ~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~l~~l~~L~~L~i~~c~~l~~i~~~~~~~~~~  269 (358)
                      ++|+.|.+.++... .+    .....+++++.+.+.++ .++..   .....+++|+.++++++ .+..+.        .
T Consensus       112 ~~L~~L~l~~~~~~-~~----~~l~~l~~l~~l~~~~n-~l~~~---~~~~~l~~L~~l~l~~n-~l~~i~--------~  173 (210)
T d1h6ta2         112 KKLKSLSLEHNGIS-DI----NGLVHLPQLESLYLGNN-KITDI---TVLSRLTKLDTLSLEDN-QISDIV--------P  173 (210)
T ss_dssp             TTCCEEECTTSCCC-CC----GGGGGCTTCCEEECCSS-CCCCC---GGGGGCTTCSEEECCSS-CCCCCG--------G
T ss_pred             cccccccccccccc-cc----ccccccccccccccccc-ccccc---ccccccccccccccccc-cccccc--------c
Confidence            99999999887542 22    12346788999998876 45544   34578999999999987 455554        4


Q ss_pred             cccCCCcceeccccccccccccCC-CCCCccEEeeeC
Q 039808          270 CTALPRLKKLTLHYLPGLVTIWSS-AWPSLEYVSFYD  305 (358)
Q Consensus       270 ~~~l~~L~~L~l~~c~~L~~~~~~-~~~~L~~L~i~~  305 (358)
                      +..+++|+.|+++++ .+++++.- .+++|++|++++
T Consensus       174 l~~l~~L~~L~Ls~N-~i~~l~~l~~l~~L~~L~Ls~  209 (210)
T d1h6ta2         174 LAGLTKLQNLYLSKN-HISDLRALAGLKNLDVLELFS  209 (210)
T ss_dssp             GTTCTTCCEEECCSS-CCCBCGGGTTCTTCSEEEEEE
T ss_pred             ccCCCCCCEEECCCC-CCCCChhhcCCCCCCEEEccC
Confidence            678999999999877 68887644 899999999875

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.13  E-value=4.5e-12  Score=111.14  Aligned_cols=180  Identities=14%  Similarity=0.096  Sum_probs=123.3

Q ss_pred             ccCccEEEeccCCCCCc--cCcccccCccCCcEEEeecCCCceEecCCCCccccCCCccceeecccccccccccccccCC
Q 039808          136 LACCTAFYLDNHLHINS--LSDFGVRSINGLKFCIISECPKIETVVDGKELTTVIFPSLENLSIHHLWNLTHICEGSVPN  213 (358)
Q Consensus       136 l~~L~~L~l~~~~~~~~--l~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~  213 (358)
                      ..++++|++.++ .+..  +.. .+..+++|++|.+++|......+.    .+...++|++|++++|..++....... .
T Consensus        45 ~~~L~~LdLs~~-~i~~~~l~~-l~~~c~~L~~L~L~~~~l~~~~~~----~l~~~~~L~~L~Ls~c~~itd~~l~~l-~  117 (284)
T d2astb2          45 PFRVQHMDLSNS-VIEVSTLHG-ILSQCSKLQNLSLEGLRLSDPIVN----TLAKNSNLVRLNLSGCSGFSEFALQTL-L  117 (284)
T ss_dssp             CBCCCEEECTTC-EECHHHHHH-HHTTBCCCSEEECTTCBCCHHHHH----HHTTCTTCSEEECTTCBSCCHHHHHHH-H
T ss_pred             CCCCCEEECCCC-ccCHHHHHH-HHHhCCCcccccccccCCCcHHHH----HHhcCCCCcCccccccccccccccchh-h
Confidence            458999999887 4432  232 367899999999999853222211    245678999999999988765321111 2


Q ss_pred             CcCccccEEeEecCCCccccCchhhh-ccCCCccEEEEecCCc-cccccccccccccccccCCCcceecccccccccccc
Q 039808          214 GSFARLRILSVHACPKLKFVFSSFMI-HFMSNLEDLTVEDCPA-IEEIISEGEIIDSGCTALPRLKKLTLHYLPGLVTIW  291 (358)
Q Consensus       214 ~~~~~L~~L~l~~c~~l~~l~~~~~l-~~l~~L~~L~i~~c~~-l~~i~~~~~~~~~~~~~l~~L~~L~l~~c~~L~~~~  291 (358)
                      ..+++|++|++++|..++.......+ ...++|+.|++++|.. +....     ...-...+|+|+.|++++|+.+++-.
T Consensus       118 ~~~~~L~~L~ls~c~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~i~~~~-----l~~l~~~~~~L~~L~L~~~~~itd~~  192 (284)
T d2astb2         118 SSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSD-----LSTLVRRCPNLVHLDLSDSVMLKNDC  192 (284)
T ss_dssp             HHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHH-----HHHHHHHCTTCSEEECTTCTTCCGGG
T ss_pred             HHHHhccccccccccccccccchhhhcccccccchhhhccccccccccc-----ccccccccccccccccccccCCCchh
Confidence            35689999999999888753222223 3457999999998743 32211     00113468999999999998887554


Q ss_pred             CC---CCCCccEEeeeCCcCCCcc-CCCCCCCCCeeEEEe
Q 039808          292 SS---AWPSLEYVSFYDCPRLKNI-GLGSNLKHSVMEIKA  327 (358)
Q Consensus       292 ~~---~~~~L~~L~i~~C~~L~~l-P~~~~~~~~L~~~~~  327 (358)
                      ..   .+++|++|++++|+.+..- ...+...++|+.+..
T Consensus       193 ~~~l~~~~~L~~L~L~~C~~i~~~~l~~L~~~~~L~~L~l  232 (284)
T d2astb2         193 FQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQV  232 (284)
T ss_dssp             GGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEEC
T ss_pred             hhhhcccCcCCEEECCCCCCCChHHHHHHhcCCCCCEEee
Confidence            43   7899999999999887642 223445778888854

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=99.12  E-value=1.5e-09  Score=96.88  Aligned_cols=68  Identities=19%  Similarity=0.218  Sum_probs=48.8

Q ss_pred             cCCCccEEEEecCCccccccccccccccccccCCCcceeccccccccccccCCCCCCccEEeeeCCcCCCccCCCCCCCC
Q 039808          241 FMSNLEDLTVEDCPAIEEIISEGEIIDSGCTALPRLKKLTLHYLPGLVTIWSSAWPSLEYVSFYDCPRLKNIGLGSNLKH  320 (358)
Q Consensus       241 ~l~~L~~L~i~~c~~l~~i~~~~~~~~~~~~~l~~L~~L~l~~c~~L~~~~~~~~~~L~~L~i~~C~~L~~lP~~~~~~~  320 (358)
                      .+++|++|++++| .+..++          ..+++|+.|+++++ .++.++. .+++|++|++++|+ ++++|....++.
T Consensus       282 ~~~~L~~L~Ls~N-~l~~lp----------~~~~~L~~L~L~~N-~L~~l~~-~~~~L~~L~L~~N~-L~~lp~~~~~L~  347 (353)
T d1jl5a_         282 LPPSLEELNVSNN-KLIELP----------ALPPRLERLIASFN-HLAEVPE-LPQNLKQLHVEYNP-LREFPDIPESVE  347 (353)
T ss_dssp             CCTTCCEEECCSS-CCSCCC----------CCCTTCCEEECCSS-CCSCCCC-CCTTCCEEECCSSC-CSSCCCCCTTCC
T ss_pred             cCCCCCEEECCCC-ccCccc----------cccCCCCEEECCCC-cCCcccc-ccCCCCEEECcCCc-CCCCCccccccC
Confidence            3578888888887 465554          24788888888665 6777765 46688889998886 888887654444


Q ss_pred             Ce
Q 039808          321 SV  322 (358)
Q Consensus       321 ~L  322 (358)
                      .|
T Consensus       348 ~L  349 (353)
T d1jl5a_         348 DL  349 (353)
T ss_dssp             EE
T ss_pred             ee
Confidence            43

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.12  E-value=2.7e-10  Score=94.05  Aligned_cols=162  Identities=12%  Similarity=0.106  Sum_probs=116.7

Q ss_pred             ccccCCceEEeeCCCCChHHHHhhccCccEEEeccCCCCCccCcccccCccCCcEEEeecCCCceEecCCCCccccCCCc
Q 039808          112 DYNKQGKCLRFINGENIPDAVLQILACCTAFYLDNHLHINSLSDFGVRSINGLKFCIISECPKIETVVDGKELTTVIFPS  191 (358)
Q Consensus       112 ~~~~~L~~L~l~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~l~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~  191 (358)
                      ..+.+++.|.+.++.-......+.+++|+.|++.++ .+..++  +++++++|++|++++|.. ..+.     ....+++
T Consensus        37 ~~l~~l~~L~l~~~~i~~l~~l~~l~nL~~L~Ls~N-~l~~~~--~l~~l~~L~~L~l~~n~~-~~~~-----~l~~l~~  107 (199)
T d2omxa2          37 TDLDQVTTLQADRLGIKSIDGVEYLNNLTQINFSNN-QLTDIT--PLKNLTKLVDILMNNNQI-ADIT-----PLANLTN  107 (199)
T ss_dssp             HHHTTCCEEECTTSCCCCCTTGGGCTTCCEEECCSS-CCCCCG--GGTTCTTCCEEECCSSCC-CCCG-----GGTTCTT
T ss_pred             HHhcCCCEEECCCCCCCCccccccCCCcCcCccccc-cccCcc--cccCCccccccccccccc-cccc-----ccccccc
Confidence            345577888877664111122456899999999998 777766  388999999999998753 3231     1557889


Q ss_pred             cceeecccccccccccccccCCCcCccccEEeEecCCCccccCchhhhccCCCccEEEEecCCccccccccccccccccc
Q 039808          192 LENLSIHHLWNLTHICEGSVPNGSFARLRILSVHACPKLKFVFSSFMIHFMSNLEDLTVEDCPAIEEIISEGEIIDSGCT  271 (358)
Q Consensus       192 L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~l~~l~~L~~L~i~~c~~l~~i~~~~~~~~~~~~  271 (358)
                      |+.|.+.++......     ....+++|+.|+++++. +..+   +.+..+++|+.|++.++ .+..++        .+.
T Consensus       108 L~~L~l~~~~~~~~~-----~~~~l~~L~~L~l~~n~-l~~~---~~l~~~~~L~~L~l~~n-~l~~l~--------~l~  169 (199)
T d2omxa2         108 LTGLTLFNNQITDID-----PLKNLTNLNRLELSSNT-ISDI---SALSGLTSLQQLNFSSN-QVTDLK--------PLA  169 (199)
T ss_dssp             CSEEECCSSCCCCCG-----GGTTCTTCSEEECCSSC-CCCC---GGGTTCTTCSEEECCSS-CCCCCG--------GGT
T ss_pred             ccccccccccccccc-----ccchhhhhHHhhhhhhh-hccc---ccccccccccccccccc-cccCCc--------ccc
Confidence            999999887654321     23468999999998874 5544   34678999999999987 455554        477


Q ss_pred             cCCCcceeccccccccccccCC-CCCCccEE
Q 039808          272 ALPRLKKLTLHYLPGLVTIWSS-AWPSLEYV  301 (358)
Q Consensus       272 ~l~~L~~L~l~~c~~L~~~~~~-~~~~L~~L  301 (358)
                      .+++|+.|+++++ ++++++.- .+++|++|
T Consensus       170 ~l~~L~~L~ls~N-~i~~i~~l~~L~~L~~L  199 (199)
T d2omxa2         170 NLTTLERLDISSN-KVSDISVLAKLTNLESL  199 (199)
T ss_dssp             TCTTCCEEECCSS-CCCCCGGGGGCTTCSEE
T ss_pred             CCCCCCEEECCCC-CCCCCccccCCCCCCcC
Confidence            8999999999887 58877543 67777765

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.09  E-value=2.6e-10  Score=99.51  Aligned_cols=179  Identities=16%  Similarity=0.152  Sum_probs=106.4

Q ss_pred             ccccCCceEEeeCCC--CChHHHHhhccCccEEEeccCCCCCccCcccccCccCCcEEEeecCCCceEecCCCCccccCC
Q 039808          112 DYNKQGKCLRFINGE--NIPDAVLQILACCTAFYLDNHLHINSLSDFGVRSINGLKFCIISECPKIETVVDGKELTTVIF  189 (358)
Q Consensus       112 ~~~~~L~~L~l~~~~--~~~~~~~~~l~~L~~L~l~~~~~~~~l~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l  189 (358)
                      ..+..|+.|.+.++.  .++.........+..+.+.....+..++...++++++|++|++++|... .+...   .....
T Consensus        53 ~~l~~L~~L~ls~n~l~~i~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~l~~L~~L~l~~n~~~-~~~~~---~~~~~  128 (284)
T d1ozna_          53 RACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQ-ELGPG---LFRGL  128 (284)
T ss_dssp             TTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEEECTTSCCC-CCCTT---TTTTC
T ss_pred             hccccccccccccccccccccccccccccccccccccccccccccchhhcccccCCEEecCCcccc-ccccc---ccchh
Confidence            334455566654442  2233333445666666666555666665556777888888888776432 22121   13456


Q ss_pred             CccceeecccccccccccccccCCCcCccccEEeEecCCCccccCchhhhccCCCccEEEEecCCccccccccccccccc
Q 039808          190 PSLENLSIHHLWNLTHICEGSVPNGSFARLRILSVHACPKLKFVFSSFMIHFMSNLEDLTVEDCPAIEEIISEGEIIDSG  269 (358)
Q Consensus       190 ~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~l~~l~~L~~L~i~~c~~l~~i~~~~~~~~~~  269 (358)
                      ++|+.+.+.+. .++.+..  ..+..+++|+.|++.++ +++.+.+ ..+..+++|+.+.++++....-.+       ..
T Consensus       129 ~~L~~l~l~~N-~l~~i~~--~~f~~~~~L~~L~l~~N-~l~~l~~-~~f~~l~~L~~l~l~~N~l~~i~~-------~~  196 (284)
T d1ozna_         129 AALQYLYLQDN-ALQALPD--DTFRDLGNLTHLFLHGN-RISSVPE-RAFRGLHSLDRLLLHQNRVAHVHP-------HA  196 (284)
T ss_dssp             TTCCEEECCSS-CCCCCCT--TTTTTCTTCCEEECCSS-CCCEECT-TTTTTCTTCCEEECCSSCCCEECT-------TT
T ss_pred             cccchhhhccc-cccccCh--hHhccccchhhcccccC-cccccch-hhhccccccchhhhhhccccccCh-------hH
Confidence            67777777664 3344321  12335677888888776 4665544 345677888888887764332222       34


Q ss_pred             cccCCCcceeccccccccccccCC---CCCCccEEeeeCCc
Q 039808          270 CTALPRLKKLTLHYLPGLVTIWSS---AWPSLEYVSFYDCP  307 (358)
Q Consensus       270 ~~~l~~L~~L~l~~c~~L~~~~~~---~~~~L~~L~i~~C~  307 (358)
                      +..+++|+.|+++++ .+..++..   .+++|++|++++.|
T Consensus       197 f~~l~~L~~L~l~~N-~i~~~~~~~~~~~~~L~~L~l~~N~  236 (284)
T d1ozna_         197 FRDLGRLMTLYLFAN-NLSALPTEALAPLRALQYLRLNDNP  236 (284)
T ss_dssp             TTTCTTCCEEECCSS-CCSCCCHHHHTTCTTCCEEECCSSC
T ss_pred             hhhhhhccccccccc-ccccccccccccccccCEEEecCCC
Confidence            667778888888665 56666554   67788888887753

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.98  E-value=2.5e-09  Score=93.06  Aligned_cols=193  Identities=12%  Similarity=0.123  Sum_probs=138.9

Q ss_pred             CCceEEeeCCC--CChHHHHhhccCccEEEeccCCCCCccCcccccCccCCcEEEeecCCCceEecCCCCccccCCCccc
Q 039808          116 QGKCLRFINGE--NIPDAVLQILACCTAFYLDNHLHINSLSDFGVRSINGLKFCIISECPKIETVVDGKELTTVIFPSLE  193 (358)
Q Consensus       116 ~L~~L~l~~~~--~~~~~~~~~l~~L~~L~l~~~~~~~~l~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~  193 (358)
                      .++.|.+.++.  .++...+..+++++.|++.++ .+..+....+..+..++.+.+..+..+..+....   ...+++|+
T Consensus        33 ~~~~L~Ls~N~i~~i~~~~f~~l~~L~~L~ls~n-~l~~i~~~~~~~~~~~~~l~~~~~~~~~~l~~~~---~~~l~~L~  108 (284)
T d1ozna_          33 ASQRIFLHGNRISHVPAASFRACRNLTILWLHSN-VLARIDAAAFTGLALLEQLDLSDNAQLRSVDPAT---FHGLGRLH  108 (284)
T ss_dssp             TCSEEECTTSCCCEECTTTTTTCTTCCEEECCSS-CCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTT---TTTCTTCC
T ss_pred             CCCEEECcCCcCCCCCHHHhhccccccccccccc-cccccccccccccccccccccccccccccccchh---hcccccCC
Confidence            56777776653  445555666888999999888 7777766667788889998887776776653332   55678999


Q ss_pred             eeecccccccccccccccCCCcCccccEEeEecCCCccccCchhhhccCCCccEEEEecCCccccccccccccccccccC
Q 039808          194 NLSIHHLWNLTHICEGSVPNGSFARLRILSVHACPKLKFVFSSFMIHFMSNLEDLTVEDCPAIEEIISEGEIIDSGCTAL  273 (358)
Q Consensus       194 ~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~l~~l~~L~~L~i~~c~~l~~i~~~~~~~~~~~~~l  273 (358)
                      +|++.++.. ..++  ....+.+++|+.+++.++ .++.+++ ..+..+++|+.|+++++ .++.++.      ..+.++
T Consensus       109 ~L~l~~n~~-~~~~--~~~~~~~~~L~~l~l~~N-~l~~i~~-~~f~~~~~L~~L~l~~N-~l~~l~~------~~f~~l  176 (284)
T d1ozna_         109 TLHLDRCGL-QELG--PGLFRGLAALQYLYLQDN-ALQALPD-DTFRDLGNLTHLFLHGN-RISSVPE------RAFRGL  176 (284)
T ss_dssp             EEECTTSCC-CCCC--TTTTTTCTTCCEEECCSS-CCCCCCT-TTTTTCTTCCEEECCSS-CCCEECT------TTTTTC
T ss_pred             EEecCCccc-cccc--ccccchhcccchhhhccc-cccccCh-hHhccccchhhcccccC-cccccch------hhhccc
Confidence            999988653 2222  223456788999999875 5666543 45678899999999987 5666541      346778


Q ss_pred             CCcceeccccccccccccCC---CCCCccEEeeeCCcCCCccCC-CCCCCCCeeEEE
Q 039808          274 PRLKKLTLHYLPGLVTIWSS---AWPSLEYVSFYDCPRLKNIGL-GSNLKHSVMEIK  326 (358)
Q Consensus       274 ~~L~~L~l~~c~~L~~~~~~---~~~~L~~L~i~~C~~L~~lP~-~~~~~~~L~~~~  326 (358)
                      ++|+.+.+.++ .+..+...   .+++|++|+++++. +..+|. .....++|+.+.
T Consensus       177 ~~L~~l~l~~N-~l~~i~~~~f~~l~~L~~L~l~~N~-i~~~~~~~~~~~~~L~~L~  231 (284)
T d1ozna_         177 HSLDRLLLHQN-RVAHVHPHAFRDLGRLMTLYLFANN-LSALPTEALAPLRALQYLR  231 (284)
T ss_dssp             TTCCEEECCSS-CCCEECTTTTTTCTTCCEEECCSSC-CSCCCHHHHTTCTTCCEEE
T ss_pred             cccchhhhhhc-cccccChhHhhhhhhcccccccccc-cccccccccccccccCEEE
Confidence            99999999876 56666544   78999999999975 666653 455677788774

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.95  E-value=5.7e-09  Score=88.40  Aligned_cols=87  Identities=14%  Similarity=0.105  Sum_probs=48.2

Q ss_pred             cccEEeEecCCCccccCchhhhccCCCccEEEEecCCccccccccccccccccccCCCcceeccccccccccccCCCCCC
Q 039808          218 RLRILSVHACPKLKFVFSSFMIHFMSNLEDLTVEDCPAIEEIISEGEIIDSGCTALPRLKKLTLHYLPGLVTIWSSAWPS  297 (358)
Q Consensus       218 ~L~~L~l~~c~~l~~l~~~~~l~~l~~L~~L~i~~c~~l~~i~~~~~~~~~~~~~l~~L~~L~l~~c~~L~~~~~~~~~~  297 (358)
                      .++.+.+.+ .+++.+...  ....+++.++...++..+++++.      ..+..+++|+.|+++++ +++.++...+.+
T Consensus       154 ~l~~L~l~~-n~l~~i~~~--~~~~~~l~~~~~l~~n~l~~l~~------~~f~~l~~L~~L~Ls~N-~l~~l~~~~~~~  223 (242)
T d1xwdc1         154 ESVILWLNK-NGIQEIHNC--AFNGTQLDELNLSDNNNLEELPN------DVFHGASGPVILDISRT-RIHSLPSYGLEN  223 (242)
T ss_dssp             SCEEEECCS-SCCCEECTT--TTTTCCEEEEECTTCTTCCCCCT------TTTTTSCCCSEEECTTS-CCCCCCSSSCTT
T ss_pred             cceeeeccc-ccccccccc--cccchhhhccccccccccccccH------HHhcCCCCCCEEECCCC-cCCccCHHHHcC
Confidence            455555544 234444221  22345555555545556666541      13556777777777665 466666655555


Q ss_pred             ccEEeeeCCcCCCccCC
Q 039808          298 LEYVSFYDCPRLKNIGL  314 (358)
Q Consensus       298 L~~L~i~~C~~L~~lP~  314 (358)
                      |..|..-++.+++.+|.
T Consensus       224 l~~L~~l~~~~l~~lp~  240 (242)
T d1xwdc1         224 LKKLRARSTYNLKKLPT  240 (242)
T ss_dssp             CCEEESSSEESSSCSCC
T ss_pred             CcccccCcCCCCCcCCC
Confidence            55555555566666664

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.93  E-value=1.4e-08  Score=85.83  Aligned_cols=193  Identities=10%  Similarity=0.029  Sum_probs=116.0

Q ss_pred             CCceEEeeCCC--CChHHHHhhccCccEEEeccCCCCCccCcccccCccCCcEEEeecCCCceEecCCCCccccCCCccc
Q 039808          116 QGKCLRFINGE--NIPDAVLQILACCTAFYLDNHLHINSLSDFGVRSINGLKFCIISECPKIETVVDGKELTTVIFPSLE  193 (358)
Q Consensus       116 ~L~~L~l~~~~--~~~~~~~~~l~~L~~L~l~~~~~~~~l~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~  193 (358)
                      .+++|++.++.  .++...+..+++|+.|++.++.....++...+.++++++++.+..+.++.......   ...+++|+
T Consensus        30 ~l~~L~Ls~n~i~~l~~~~f~~l~~L~~L~ls~n~~~~~i~~~~f~~l~~l~~l~~~~~n~l~~~~~~~---~~~l~~L~  106 (242)
T d1xwdc1          30 NAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEA---FQNLPNLQ  106 (242)
T ss_dssp             CCSEEEEESCCCCEECTTTTTTCTTCCEEEEESCTTCCEECSSSEESCTTCCEEEEECCTTCCEECTTS---EECCTTCC
T ss_pred             CCCEEECcCCcCCccChhHhhccchhhhhhhccccccceeecccccccccccccccccccccccccccc---cccccccc
Confidence            56666666543  33444445577888888877744444555457778888888877766666554332   45677888


Q ss_pred             eeecccccccccccccccCCCcCccccEEeEe--cCCCccccCchhhhccCCCccEEEEecCCccccccccccccccccc
Q 039808          194 NLSIHHLWNLTHICEGSVPNGSFARLRILSVH--ACPKLKFVFSSFMIHFMSNLEDLTVEDCPAIEEIISEGEIIDSGCT  271 (358)
Q Consensus       194 ~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~--~c~~l~~l~~~~~l~~l~~L~~L~i~~c~~l~~i~~~~~~~~~~~~  271 (358)
                      ++.+.++. +....    ....+.+++.+...  ++..+..+.+..+.+....++.|+++++ .+..+.       ....
T Consensus       107 ~l~l~~~~-l~~~~----~~~~~~~l~~l~~~~~~n~~l~~i~~~~~~~~~~~l~~L~l~~n-~l~~i~-------~~~~  173 (242)
T d1xwdc1         107 YLLISNTG-IKHLP----DVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKN-GIQEIH-------NCAF  173 (242)
T ss_dssp             EEEEESCC-CCSCC----CCTTTCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSS-CCCEEC-------TTTT
T ss_pred             ccccchhh-hcccc----cccccccccccccccccccccccccccccccccccceeeecccc-cccccc-------cccc
Confidence            88887753 33321    12233444444432  2334555433322222236677777653 454544       2334


Q ss_pred             cCCCcceeccccccccccccCC---CCCCccEEeeeCCcCCCccCCC-CCCCCCeeEE
Q 039808          272 ALPRLKKLTLHYLPGLVTIWSS---AWPSLEYVSFYDCPRLKNIGLG-SNLKHSVMEI  325 (358)
Q Consensus       272 ~l~~L~~L~l~~c~~L~~~~~~---~~~~L~~L~i~~C~~L~~lP~~-~~~~~~L~~~  325 (358)
                      ..++++.+....+..++.++..   ++++|++|++++++ ++.+|.+ +..++.|+.+
T Consensus       174 ~~~~l~~~~~l~~n~l~~l~~~~f~~l~~L~~L~Ls~N~-l~~l~~~~~~~l~~L~~l  230 (242)
T d1xwdc1         174 NGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTR-IHSLPSYGLENLKKLRAR  230 (242)
T ss_dssp             TTCCEEEEECTTCTTCCCCCTTTTTTSCCCSEEECTTSC-CCCCCSSSCTTCCEEESS
T ss_pred             cchhhhccccccccccccccHHHhcCCCCCCEEECCCCc-CCccCHHHHcCCcccccC
Confidence            4567777766667789888876   78999999999874 8899875 3445555543

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=98.80  E-value=4.3e-08  Score=87.08  Aligned_cols=71  Identities=24%  Similarity=0.160  Sum_probs=54.1

Q ss_pred             cCccccEEeEecCCCccccCchhhhccCCCccEEEEecCCccccccccccccccccccCCCcceeccccccccccccCCC
Q 039808          215 SFARLRILSVHACPKLKFVFSSFMIHFMSNLEDLTVEDCPAIEEIISEGEIIDSGCTALPRLKKLTLHYLPGLVTIWSSA  294 (358)
Q Consensus       215 ~~~~L~~L~l~~c~~l~~l~~~~~l~~l~~L~~L~i~~c~~l~~i~~~~~~~~~~~~~l~~L~~L~l~~c~~L~~~~~~~  294 (358)
                      .+++|++|++++| +++.++     ..+++|+.|++++| .+++++          ..+++|+.|++++++ ++.+|. .
T Consensus       282 ~~~~L~~L~Ls~N-~l~~lp-----~~~~~L~~L~L~~N-~L~~l~----------~~~~~L~~L~L~~N~-L~~lp~-~  342 (353)
T d1jl5a_         282 LPPSLEELNVSNN-KLIELP-----ALPPRLERLIASFN-HLAEVP----------ELPQNLKQLHVEYNP-LREFPD-I  342 (353)
T ss_dssp             CCTTCCEEECCSS-CCSCCC-----CCCTTCCEEECCSS-CCSCCC----------CCCTTCCEEECCSSC-CSSCCC-C
T ss_pred             cCCCCCEEECCCC-ccCccc-----cccCCCCEEECCCC-cCCccc----------cccCCCCEEECcCCc-CCCCCc-c
Confidence            4689999999998 466652     24789999999887 576665          235689999999885 888876 3


Q ss_pred             CCCccEEeee
Q 039808          295 WPSLEYVSFY  304 (358)
Q Consensus       295 ~~~L~~L~i~  304 (358)
                      ..+|+.|.+.
T Consensus       343 ~~~L~~L~~~  352 (353)
T d1jl5a_         343 PESVEDLRMN  352 (353)
T ss_dssp             CTTCCEEECC
T ss_pred             ccccCeeECc
Confidence            4578888764

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.51  E-value=1e-07  Score=75.42  Aligned_cols=32  Identities=9%  Similarity=0.025  Sum_probs=14.0

Q ss_pred             ccEEEeccCCCCCccCcccccCccCCcEEEeecC
Q 039808          139 CTAFYLDNHLHINSLSDFGVRSINGLKFCIISEC  172 (358)
Q Consensus       139 L~~L~l~~~~~~~~l~~~~l~~l~~L~~L~l~~~  172 (358)
                      ++.|++.++ .+..++. ....+++|+.|++++|
T Consensus        20 lr~L~L~~n-~I~~i~~-~~~~l~~L~~L~Ls~N   51 (162)
T d1a9na_          20 DRELDLRGY-KIPVIEN-LGATLDQFDAIDFSDN   51 (162)
T ss_dssp             CEEEECTTS-CCCSCCC-GGGGTTCCSEEECCSS
T ss_pred             CcEEECCCC-CCCccCc-cccccccCCEEECCCC
Confidence            444444444 4444432 1234445555555544

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.44  E-value=2.9e-07  Score=69.22  Aligned_cols=99  Identities=13%  Similarity=0.113  Sum_probs=55.2

Q ss_pred             cEEEeccCCCCCccCcccccCccCCcEEEeecCCCceEecCCCCccccCCCccceeecccccccccccccccCCCcCccc
Q 039808          140 TAFYLDNHLHINSLSDFGVRSINGLKFCIISECPKIETVVDGKELTTVIFPSLENLSIHHLWNLTHICEGSVPNGSFARL  219 (358)
Q Consensus       140 ~~L~l~~~~~~~~l~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L  219 (358)
                      +.|++.++ ++..++  .++.+++|++|++++| .+..+++.    ...+++|+.|.+++. .++.++    ..+.+++|
T Consensus         1 R~L~Ls~n-~l~~l~--~l~~l~~L~~L~ls~N-~l~~lp~~----~~~l~~L~~L~l~~N-~i~~l~----~~~~l~~L   67 (124)
T d1dcea3           1 RVLHLAHK-DLTVLC--HLEQLLLVTHLDLSHN-RLRALPPA----LAALRCLEVLQASDN-ALENVD----GVANLPRL   67 (124)
T ss_dssp             SEEECTTS-CCSSCC--CGGGGTTCCEEECCSS-CCCCCCGG----GGGCTTCCEEECCSS-CCCCCG----GGTTCSSC
T ss_pred             CEEEcCCC-CCCCCc--ccccCCCCCEEECCCC-ccCcchhh----hhhhhcccccccccc-cccccC----cccccccc
Confidence            35666666 666665  3677788888888776 34444322    445666666666653 333321    13455666


Q ss_pred             cEEeEecCCCccccCchhhhccCCCccEEEEec
Q 039808          220 RILSVHACPKLKFVFSSFMIHFMSNLEDLTVED  252 (358)
Q Consensus       220 ~~L~l~~c~~l~~l~~~~~l~~l~~L~~L~i~~  252 (358)
                      ++|++.++ +++.+.....+..+++|+.|++++
T Consensus        68 ~~L~l~~N-~i~~~~~~~~l~~~~~L~~L~l~~   99 (124)
T d1dcea3          68 QELLLCNN-RLQQSAAIQPLVSCPRLVLLNLQG   99 (124)
T ss_dssp             CEEECCSS-CCCSSSTTGGGGGCTTCCEEECTT
T ss_pred             CeEECCCC-ccCCCCCchhhcCCCCCCEEECCC
Confidence            66666654 333332222345566666666655

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.44  E-value=3.1e-08  Score=78.50  Aligned_cols=57  Identities=26%  Similarity=0.315  Sum_probs=30.8

Q ss_pred             CCceEEeeCCC--CChHHHHhhccCccEEEeccCCCCCccCcc-cccCccCCcEEEeecCC
Q 039808          116 QGKCLRFINGE--NIPDAVLQILACCTAFYLDNHLHINSLSDF-GVRSINGLKFCIISECP  173 (358)
Q Consensus       116 ~L~~L~l~~~~--~~~~~~~~~l~~L~~L~l~~~~~~~~l~~~-~l~~l~~L~~L~l~~~~  173 (358)
                      +|+.|.+.++.  .++..+...+++++.|++.++ .+..+++. .+..+++|++|++++|+
T Consensus        64 ~L~~L~ls~N~i~~l~~~~~~~l~~L~~L~L~~N-~i~~~~~l~~l~~l~~L~~L~l~~N~  123 (162)
T d1a9na_          64 RLKTLLVNNNRICRIGEGLDQALPDLTELILTNN-SLVELGDLDPLASLKSLTYLCILRNP  123 (162)
T ss_dssp             SCCEEECCSSCCCEECSCHHHHCTTCCEEECCSC-CCCCGGGGGGGGGCTTCCEEECCSSG
T ss_pred             chhhhhcccccccCCCccccccccccccceeccc-cccccccccccccccccchhhcCCCc
Confidence            45555554442  233334445666666666666 45444432 35566666666666653

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.27  E-value=1e-06  Score=66.11  Aligned_cols=56  Identities=9%  Similarity=0.123  Sum_probs=42.1

Q ss_pred             eeccCCC---CccCCchhhcCccccEEEeeecCCCcceecccchhhhhhcCCCCCceEEEEccCchhHH
Q 039808            8 EYVKMPP---QLISSGIISRLHALKTLSIVVYPGDKRWYKDVKSVVLEVCNLTELSSLCFHFPEIKLLE   73 (358)
Q Consensus         8 ~~l~L~~---~~ip~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~~~~~~l~~l~   73 (358)
                      |+|+|+.   +.++.  ++++.+|++|++++ +.++       .++..+..+++|++|.+..+.++.++
T Consensus         1 R~L~Ls~n~l~~l~~--l~~l~~L~~L~ls~-N~l~-------~lp~~~~~l~~L~~L~l~~N~i~~l~   59 (124)
T d1dcea3           1 RVLHLAHKDLTVLCH--LEQLLLVTHLDLSH-NRLR-------ALPPALAALRCLEVLQASDNALENVD   59 (124)
T ss_dssp             SEEECTTSCCSSCCC--GGGGTTCCEEECCS-SCCC-------CCCGGGGGCTTCCEEECCSSCCCCCG
T ss_pred             CEEEcCCCCCCCCcc--cccCCCCCEEECCC-CccC-------cchhhhhhhhcccccccccccccccC
Confidence            5677777   34554  68999999999998 4443       34456888999999999888777665

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=98.16  E-value=2.1e-08  Score=82.38  Aligned_cols=109  Identities=19%  Similarity=0.280  Sum_probs=69.8

Q ss_pred             HHhhccCccEEEeccCCCCCccCcccccCccCCcEEEeecCCCceEecCCCCccccCCCccceeeccccccccccccccc
Q 039808          132 VLQILACCTAFYLDNHLHINSLSDFGVRSINGLKFCIISECPKIETVVDGKELTTVIFPSLENLSIHHLWNLTHICEGSV  211 (358)
Q Consensus       132 ~~~~l~~L~~L~l~~~~~~~~l~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~  211 (358)
                      ....+++|+.|++.++ .+..++  .+.++++|++|++++|. +..+++.    ...+++|++|++.++ .++.+.    
T Consensus        43 sl~~L~~L~~L~Ls~n-~I~~i~--~l~~l~~L~~L~Ls~N~-i~~i~~~----~~~~~~L~~L~l~~N-~i~~l~----  109 (198)
T d1m9la_          43 TLSTLKACKHLALSTN-NIEKIS--SLSGMENLRILSLGRNL-IKKIENL----DAVADTLEELWISYN-QIASLS----  109 (198)
T ss_dssp             HHHHTTTCCEEECSEE-EESCCC--CHHHHTTCCEEECCEEE-ECSCSSH----HHHHHHCCEEECSEE-ECCCHH----
T ss_pred             HHhcccccceeECccc-CCCCcc--cccCCccccChhhcccc-ccccccc----ccccccccccccccc-cccccc----
Confidence            3456888888988887 677775  47888899999998873 3333211    223457888888765 344431    


Q ss_pred             CCCcCccccEEeEecCCCccccCchhhhccCCCccEEEEecCC
Q 039808          212 PNGSFARLRILSVHACPKLKFVFSSFMIHFMSNLEDLTVEDCP  254 (358)
Q Consensus       212 ~~~~~~~L~~L~l~~c~~l~~l~~~~~l~~l~~L~~L~i~~c~  254 (358)
                      ....+++|+.|+++++ +++.+.....+..+++|+.|++++++
T Consensus       110 ~~~~l~~L~~L~L~~N-~i~~~~~~~~l~~l~~L~~L~L~~N~  151 (198)
T d1m9la_         110 GIEKLVNLRVLYMSNN-KITNWGEIDKLAALDKLEDLLLAGNP  151 (198)
T ss_dssp             HHHHHHHSSEEEESEE-ECCCHHHHHHHTTTTTCSEEEECSSH
T ss_pred             cccccccccccccccc-hhccccccccccCCCccceeecCCCc
Confidence            1335677888888765 34433222345677888888887764

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=98.14  E-value=7.2e-06  Score=66.23  Aligned_cols=35  Identities=14%  Similarity=0.054  Sum_probs=15.2

Q ss_pred             cCccEEEeccCCCCCc-cCcccccCccCCcEEEeecC
Q 039808          137 ACCTAFYLDNHLHINS-LSDFGVRSINGLKFCIISEC  172 (358)
Q Consensus       137 ~~L~~L~l~~~~~~~~-l~~~~l~~l~~L~~L~l~~~  172 (358)
                      ++++.|++.++ .+.. +....++++++|++|+++++
T Consensus        29 ~~l~~L~Ls~N-~i~~~~~~~~f~~l~~L~~L~L~~N   64 (192)
T d1w8aa_          29 LHTTELLLNDN-ELGRISSDGLFGRLPHLVKLELKRN   64 (192)
T ss_dssp             TTCSEEECCSC-CCCSBCCSCSGGGCTTCCEEECCSS
T ss_pred             CCCCEEEeCCC-CCcccccccccCCCceEeeeecccc
Confidence            34445555444 3322 22223444455555555444

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=98.13  E-value=6.1e-06  Score=66.69  Aligned_cols=107  Identities=17%  Similarity=0.080  Sum_probs=74.7

Q ss_pred             CCccceeecccccccccccccccCCCcCccccEEeEecCCCccccCchhhhccCCCccEEEEecCCcccccccccccccc
Q 039808          189 FPSLENLSIHHLWNLTHICEGSVPNGSFARLRILSVHACPKLKFVFSSFMIHFMSNLEDLTVEDCPAIEEIISEGEIIDS  268 (358)
Q Consensus       189 l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~l~~l~~L~~L~i~~c~~l~~i~~~~~~~~~  268 (358)
                      ++++++|++++..-.+.+.  ...++.+++|++|++.++. +..+.+ ..+..+++|++|+++++ .+..++.      .
T Consensus        28 p~~l~~L~Ls~N~i~~~~~--~~~f~~l~~L~~L~L~~N~-i~~~~~-~~~~~~~~L~~L~Ls~N-~l~~l~~------~   96 (192)
T d1w8aa_          28 PLHTTELLLNDNELGRISS--DGLFGRLPHLVKLELKRNQ-LTGIEP-NAFEGASHIQELQLGEN-KIKEISN------K   96 (192)
T ss_dssp             CTTCSEEECCSCCCCSBCC--SCSGGGCTTCCEEECCSSC-CCCBCT-TTTTTCTTCCEEECCSC-CCCEECS------S
T ss_pred             CCCCCEEEeCCCCCccccc--ccccCCCceEeeeeccccc-cccccc-cccccccccceeeeccc-cccccCH------H
Confidence            4688899888764322221  2223567888999988764 444433 45567888999998886 6666652      2


Q ss_pred             ccccCCCcceeccccccccccccCC---CCCCccEEeeeCCc
Q 039808          269 GCTALPRLKKLTLHYLPGLVTIWSS---AWPSLEYVSFYDCP  307 (358)
Q Consensus       269 ~~~~l~~L~~L~l~~c~~L~~~~~~---~~~~L~~L~i~~C~  307 (358)
                      .+.++++|+.|+++++ .++.++.+   .+++|+++++.+.+
T Consensus        97 ~F~~l~~L~~L~L~~N-~l~~i~~~~f~~l~~L~~l~L~~N~  137 (192)
T d1w8aa_          97 MFLGLHQLKTLNLYDN-QISCVMPGSFEHLNSLTSLNLASNP  137 (192)
T ss_dssp             SSTTCTTCCEEECCSS-CCCEECTTSSTTCTTCCEEECTTCC
T ss_pred             HHhCCCcccccccCCc-cccccCHHHhcCCcccccccccccc
Confidence            4677888999999765 78888776   78888888888864

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=97.84  E-value=3e-07  Score=75.21  Aligned_cols=39  Identities=15%  Similarity=0.376  Sum_probs=22.8

Q ss_pred             hhccCccEEEeccCCCCCccCcc-cccCccCCcEEEeecCC
Q 039808          134 QILACCTAFYLDNHLHINSLSDF-GVRSINGLKFCIISECP  173 (358)
Q Consensus       134 ~~l~~L~~L~l~~~~~~~~l~~~-~l~~l~~L~~L~l~~~~  173 (358)
                      ..+++|+.|++.++ .+..+... .+..+++|++|++++|+
T Consensus       112 ~~l~~L~~L~L~~N-~i~~~~~~~~l~~l~~L~~L~L~~N~  151 (198)
T d1m9la_         112 EKLVNLRVLYMSNN-KITNWGEIDKLAALDKLEDLLLAGNP  151 (198)
T ss_dssp             HHHHHSSEEEESEE-ECCCHHHHHHHTTTTTCSEEEECSSH
T ss_pred             cccccccccccccc-hhccccccccccCCCccceeecCCCc
Confidence            34566666666665 45444321 35666677777776654

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.70  E-value=5.1e-05  Score=58.90  Aligned_cols=82  Identities=17%  Similarity=0.169  Sum_probs=44.5

Q ss_pred             CccccEEeEecCCCccccCchhhhccCCCccEEEEecCCccccccccccccccccccCCCcceeccccccccccccCC--
Q 039808          216 FARLRILSVHACPKLKFVFSSFMIHFMSNLEDLTVEDCPAIEEIISEGEIIDSGCTALPRLKKLTLHYLPGLVTIWSS--  293 (358)
Q Consensus       216 ~~~L~~L~l~~c~~l~~l~~~~~l~~l~~L~~L~i~~c~~l~~i~~~~~~~~~~~~~l~~L~~L~l~~c~~L~~~~~~--  293 (358)
                      +++|++|++.+...++.+.+ ..+.++++|+.|+++++ .++.+..      ..+..+++|+.|++++. +++.++..  
T Consensus        30 l~~l~~L~l~~n~~l~~i~~-~~f~~l~~L~~L~Ls~N-~l~~i~~------~~f~~l~~L~~L~Ls~N-~l~~l~~~~~  100 (156)
T d2ifga3          30 AENLTELYIENQQHLQHLEL-RDLRGLGELRNLTIVKS-GLRFVAP------DAFHFTPRLSRLNLSFN-ALESLSWKTV  100 (156)
T ss_dssp             CSCCSEEECCSCSSCCEECG-GGSCSCCCCSEEECCSS-CCCEECT------TGGGSCSCCCEEECCSS-CCSCCCSTTT
T ss_pred             ccccCeeecCCCccccccCc-hhhccccccCcceeecc-ccCCccc------ccccccccccceeccCC-CCcccChhhh
Confidence            34555666555445555433 23455666666666654 4444431      23455666666666544 56666555  


Q ss_pred             CCCCccEEeeeCC
Q 039808          294 AWPSLEYVSFYDC  306 (358)
Q Consensus       294 ~~~~L~~L~i~~C  306 (358)
                      ...+|+.|++++.
T Consensus       101 ~~~~l~~L~L~~N  113 (156)
T d2ifga3         101 QGLSLQELVLSGN  113 (156)
T ss_dssp             CSCCCCEEECCSS
T ss_pred             ccccccccccCCC
Confidence            3345666666665

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.61  E-value=0.00018  Score=55.62  Aligned_cols=81  Identities=19%  Similarity=0.185  Sum_probs=66.5

Q ss_pred             hccCCCccEEEEecCCccccccccccccccccccCCCcceeccccccccccccCC---CCCCccEEeeeCCcCCCccCCC
Q 039808          239 IHFMSNLEDLTVEDCPAIEEIISEGEIIDSGCTALPRLKKLTLHYLPGLVTIWSS---AWPSLEYVSFYDCPRLKNIGLG  315 (358)
Q Consensus       239 l~~l~~L~~L~i~~c~~l~~i~~~~~~~~~~~~~l~~L~~L~l~~c~~L~~~~~~---~~~~L~~L~i~~C~~L~~lP~~  315 (358)
                      +..+++|++|+|.+...++.++.      ..+.++++|+.|+++++ .++.++..   .+++|++|+++++ +++.+|.+
T Consensus        27 l~~l~~l~~L~l~~n~~l~~i~~------~~f~~l~~L~~L~Ls~N-~l~~i~~~~f~~l~~L~~L~Ls~N-~l~~l~~~   98 (156)
T d2ifga3          27 LPGAENLTELYIENQQHLQHLEL------RDLRGLGELRNLTIVKS-GLRFVAPDAFHFTPRLSRLNLSFN-ALESLSWK   98 (156)
T ss_dssp             SCSCSCCSEEECCSCSSCCEECG------GGSCSCCCCSEEECCSS-CCCEECTTGGGSCSCCCEEECCSS-CCSCCCST
T ss_pred             ccCccccCeeecCCCccccccCc------hhhccccccCcceeecc-ccCCcccccccccccccceeccCC-CCcccChh
Confidence            45788999999988777887762      24778999999999877 79999776   8999999999997 59999988


Q ss_pred             CCCCCCeeEEEe
Q 039808          316 SNLKHSVMEIKA  327 (358)
Q Consensus       316 ~~~~~~L~~~~~  327 (358)
                      .-....|+.+.-
T Consensus        99 ~~~~~~l~~L~L  110 (156)
T d2ifga3          99 TVQGLSLQELVL  110 (156)
T ss_dssp             TTCSCCCCEEEC
T ss_pred             hhcccccccccc
Confidence            766667887754

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=97.49  E-value=5.6e-06  Score=73.28  Aligned_cols=90  Identities=16%  Similarity=0.186  Sum_probs=46.6

Q ss_pred             cCccccEEeEecCCCccccCc---hhhhccCCCccEEEEecCCccccccccccccccccccCCCcceecccccccccccc
Q 039808          215 SFARLRILSVHACPKLKFVFS---SFMIHFMSNLEDLTVEDCPAIEEIISEGEIIDSGCTALPRLKKLTLHYLPGLVTIW  291 (358)
Q Consensus       215 ~~~~L~~L~l~~c~~l~~l~~---~~~l~~l~~L~~L~i~~c~~l~~i~~~~~~~~~~~~~l~~L~~L~l~~c~~L~~~~  291 (358)
                      ..++|+.|+++++. ++....   ...+...++|++|++++|. +.......-.........++|+.|+++++ .++.-.
T Consensus       213 ~~~~L~~L~Ls~N~-i~~~g~~~L~~~l~~~~~L~~L~Ls~n~-i~~~g~~~l~~~l~~~~~~~L~~L~ls~N-~i~~~~  289 (344)
T d2ca6a1         213 YCQELKVLDLQDNT-FTHLGSSALAIALKSWPNLRELGLNDCL-LSARGAAAVVDAFSKLENIGLQTLRLQYN-EIELDA  289 (344)
T ss_dssp             GCTTCCEEECCSSC-CHHHHHHHHHHHGGGCTTCCEEECTTCC-CCHHHHHHHHHHHHTCSSCCCCEEECCSS-CCBHHH
T ss_pred             chhhhccccccccc-ccccccccccccccccccchhhhhhcCc-cCchhhHHHHHHhhhccCCCCCEEECCCC-cCChHH
Confidence            45677777777664 322111   1234567788888887774 22110000000001223467888888765 344321


Q ss_pred             CC--------CCCCccEEeeeCCc
Q 039808          292 SS--------AWPSLEYVSFYDCP  307 (358)
Q Consensus       292 ~~--------~~~~L~~L~i~~C~  307 (358)
                      ..        ..++|++|+++++.
T Consensus       290 ~~~l~~~l~~~~~~L~~L~l~~N~  313 (344)
T d2ca6a1         290 VRTLKTVIDEKMPDLLFLELNGNR  313 (344)
T ss_dssp             HHHHHHHHHHHCTTCCEEECTTSB
T ss_pred             HHHHHHHHHccCCCCCEEECCCCc
Confidence            11        36778888887753

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=96.45  E-value=0.00056  Score=59.86  Aligned_cols=240  Identities=10%  Similarity=0.041  Sum_probs=121.9

Q ss_pred             cccceeccCCCCccCCc-------hhhcCccccEEEeeecCCCcceecc----cchhhhhhcCCCCCceEEEEccCc---
Q 039808            4 SCNVEYVKMPPQLISSG-------IISRLHALKTLSIVVYPGDKRWYKD----VKSVVLEVCNLTELSSLCFHFPEI---   69 (358)
Q Consensus         4 l~~L~~l~L~~~~ip~~-------~i~~L~~L~~L~l~~~~~~~~~~~~----~~~~~~~l~~l~~L~~L~~~~~~l---   69 (358)
                      ..+++.++|++..+...       .+....+|++|+++++. .......    ...+...+..+++|++|++..+.+   
T Consensus        30 ~~~l~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~l~l~~~~-~~~~~~~~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~  108 (344)
T d2ca6a1          30 DDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIF-TGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPT  108 (344)
T ss_dssp             CSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCC-TTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCCCTT
T ss_pred             CCCCCEEECcCCcCCHHHHHHHHHHHHhCCCCCEEECCCCc-ccccccccchHHHHHHHHHhhCCCcccccccccccccc
Confidence            35688888887444221       25678899999998732 2111111    122345678899999999875543   


Q ss_pred             --hhHHHHHhhhccccccccceEEEEEeCcccc---cc----ccCCcccccccccCCceEEeeCCCCChH------HHHh
Q 039808           70 --KLLELFLQRCVAWNAQCLTEFRIVVGHDIKN---IV----SRVPDAVAFDYNKQGKCLRFINGENIPD------AVLQ  134 (358)
Q Consensus        70 --~~l~~~~~~~~~~~~~~L~~l~i~~~~~~~~---~~----~~~~~~~~l~~~~~L~~L~l~~~~~~~~------~~~~  134 (358)
                        ..+...+.     ..++|+++.+........   .+    ..............++.+.+.++.-...      ....
T Consensus       109 ~~~~l~~~l~-----~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~~~~~~~~~~L~~l~l~~n~i~~~~~~~l~~~l~  183 (344)
T d2ca6a1         109 AQEPLIDFLS-----KHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQ  183 (344)
T ss_dssp             THHHHHHHHH-----HCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHH
T ss_pred             cccchhhhhc-----ccccchheecccccccccccccccccccccccccccccCcccceeecccccccccccccccchhh
Confidence              33433333     356777777621110000   00    0000000112334677777766531111      1234


Q ss_pred             hccCccEEEeccCCCCCc------cCcccccCccCCcEEEeecCCCceEecCCCCccccCCCccceeeccccccccc---
Q 039808          135 ILACCTAFYLDNHLHINS------LSDFGVRSINGLKFCIISECPKIETVVDGKELTTVIFPSLENLSIHHLWNLTH---  205 (358)
Q Consensus       135 ~l~~L~~L~l~~~~~~~~------l~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~---  205 (358)
                      ..+.++.|++..+ .+..      +.. .+..+++|+.|++++|.....-...-...+...++|++|.+++|.--..   
T Consensus       184 ~~~~L~~L~L~~n-~i~~~g~~~~l~~-~l~~~~~L~~L~Ls~N~i~~~g~~~L~~~l~~~~~L~~L~Ls~n~i~~~g~~  261 (344)
T d2ca6a1         184 SHRLLHTVKMVQN-GIRPEGIEHLLLE-GLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAA  261 (344)
T ss_dssp             HCTTCCEEECCSS-CCCHHHHHHHHHT-TGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHH
T ss_pred             hhhhhcccccccc-cccccccccchhh-hhcchhhhcccccccccccccccccccccccccccchhhhhhcCccCchhhH
Confidence            4678999999887 4433      111 4667888999999887532110000001134567788888777642111   


Q ss_pred             -ccccccCCCcCccccEEeEecCCCccccCch----hhhccCCCccEEEEecC
Q 039808          206 -ICEGSVPNGSFARLRILSVHACPKLKFVFSS----FMIHFMSNLEDLTVEDC  253 (358)
Q Consensus       206 -~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~----~~l~~l~~L~~L~i~~c  253 (358)
                       +... ......+.|++|+++++. ++.-...    .+..+.++|+.|+++++
T Consensus       262 ~l~~~-l~~~~~~~L~~L~ls~N~-i~~~~~~~l~~~l~~~~~~L~~L~l~~N  312 (344)
T d2ca6a1         262 AVVDA-FSKLENIGLQTLRLQYNE-IELDAVRTLKTVIDEKMPDLLFLELNGN  312 (344)
T ss_dssp             HHHHH-HHTCSSCCCCEEECCSSC-CBHHHHHHHHHHHHHHCTTCCEEECTTS
T ss_pred             HHHHH-hhhccCCCCCEEECCCCc-CChHHHHHHHHHHHccCCCCCEEECCCC
Confidence             1000 001124567777777653 4321100    11124566777776654

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.03  E-value=0.005  Score=55.04  Aligned_cols=110  Identities=15%  Similarity=0.191  Sum_probs=67.8

Q ss_pred             Cccceeecccccccccc-cccccCCCcCccccEEeEecCCCccccCc---hhhhccCCCccEEEEecCCccccccccccc
Q 039808          190 PSLENLSIHHLWNLTHI-CEGSVPNGSFARLRILSVHACPKLKFVFS---SFMIHFMSNLEDLTVEDCPAIEEIISEGEI  265 (358)
Q Consensus       190 ~~L~~L~l~~~~~l~~~-~~~~~~~~~~~~L~~L~l~~c~~l~~l~~---~~~l~~l~~L~~L~i~~c~~l~~i~~~~~~  265 (358)
                      ++|++|+++. .++... +..-  .+.+++++.|++.+|. ++....   ...+..+++|++|+++++. +...... . 
T Consensus         2 ~~l~~ld~~~-~~i~~~~~~~l--~~~l~~l~~L~L~~~~-i~~~~~~~l~~~L~~~~~L~~LdLs~N~-i~~~~~~-~-   74 (460)
T d1z7xw1           2 LDIQSLDIQC-EELSDARWAEL--LPLLQQCQVVRLDDCG-LTEARCKDISSALRVNPALAELNLRSNE-LGDVGVH-C-   74 (460)
T ss_dssp             EEEEEEEEES-CCCCHHHHHHH--HHHHTTCSEEEEESSC-CCHHHHHHHHHHHHTCTTCCEEECTTCC-CHHHHHH-H-
T ss_pred             CCCCEEEeeC-CcCChHHHHHH--HHhCCCCCEEEeCCCC-CCHHHHHHHHHHHhcCCCCCEEECcCCc-CChHHHH-H-
Confidence            4688999955 444332 1111  2357899999999994 553211   1235688999999999873 4321100 0 


Q ss_pred             ccccc-ccCCCcceeccccccccccccCC-------CCCCccEEeeeCCc
Q 039808          266 IDSGC-TALPRLKKLTLHYLPGLVTIWSS-------AWPSLEYVSFYDCP  307 (358)
Q Consensus       266 ~~~~~-~~l~~L~~L~l~~c~~L~~~~~~-------~~~~L~~L~i~~C~  307 (358)
                      ..... ...++|++|++++| .++.....       .+++|++|++.+|.
T Consensus        75 l~~~l~~~~~~L~~L~L~~n-~it~~~~~~l~~~l~~~~~L~~L~L~~N~  123 (460)
T d1z7xw1          75 VLQGLQTPSCKIQKLSLQNC-CLTGAGCGVLSSTLRTLPTLQELHLSDNL  123 (460)
T ss_dssp             HHHTTCSTTCCCCEEECTTS-CCBGGGHHHHHHHTTSCTTCCEEECCSSB
T ss_pred             HHHHHhcCCCCCCEEECCCC-Cccccccccccchhhcccccccccccccc
Confidence            00011 12357999999988 46654321       68999999999985

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.84  E-value=0.013  Score=52.22  Aligned_cols=115  Identities=14%  Similarity=0.087  Sum_probs=67.0

Q ss_pred             cCCcEEEeecCCCceEecCCCCccccCCCccceeeccccccccccccc--ccCCCcCccccEEeEecCCCccccCchhhh
Q 039808          162 NGLKFCIISECPKIETVVDGKELTTVIFPSLENLSIHHLWNLTHICEG--SVPNGSFARLRILSVHACPKLKFVFSSFMI  239 (358)
Q Consensus       162 ~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~--~~~~~~~~~L~~L~l~~c~~l~~l~~~~~l  239 (358)
                      .+|+.|+|+++ ++... +. ..-...++++++|.+.+|. ++.....  .......++|++|+++++. ++..+...+.
T Consensus         2 ~~l~~ld~~~~-~i~~~-~~-~~l~~~l~~l~~L~L~~~~-i~~~~~~~l~~~L~~~~~L~~LdLs~N~-i~~~~~~~l~   76 (460)
T d1z7xw1           2 LDIQSLDIQCE-ELSDA-RW-AELLPLLQQCQVVRLDDCG-LTEARCKDISSALRVNPALAELNLRSNE-LGDVGVHCVL   76 (460)
T ss_dssp             EEEEEEEEESC-CCCHH-HH-HHHHHHHTTCSEEEEESSC-CCHHHHHHHHHHHHTCTTCCEEECTTCC-CHHHHHHHHH
T ss_pred             CCCCEEEeeCC-cCChH-HH-HHHHHhCCCCCEEEeCCCC-CCHHHHHHHHHHHhcCCCCCEEECcCCc-CChHHHHHHH
Confidence            36899999665 44321 00 0013457899999999984 3321100  0112357899999998874 5432111122


Q ss_pred             c----cCCCccEEEEecCCccccccccccccccccccCCCcceeccccc
Q 039808          240 H----FMSNLEDLTVEDCPAIEEIISEGEIIDSGCTALPRLKKLTLHYL  284 (358)
Q Consensus       240 ~----~l~~L~~L~i~~c~~l~~i~~~~~~~~~~~~~l~~L~~L~l~~c  284 (358)
                      .    ..++|++|++++|. +......  ........+++|+.|+++++
T Consensus        77 ~~l~~~~~~L~~L~L~~n~-it~~~~~--~l~~~l~~~~~L~~L~L~~N  122 (460)
T d1z7xw1          77 QGLQTPSCKIQKLSLQNCC-LTGAGCG--VLSSTLRTLPTLQELHLSDN  122 (460)
T ss_dssp             HTTCSTTCCCCEEECTTSC-CBGGGHH--HHHHHTTSCTTCCEEECCSS
T ss_pred             HHHhcCCCCCCEEECCCCC-ccccccc--cccchhhccccccccccccc
Confidence            2    23589999999984 4332100  00023567889999999876

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.68  E-value=0.0054  Score=47.18  Aligned_cols=63  Identities=16%  Similarity=0.071  Sum_probs=31.2

Q ss_pred             cCccccEEeEecCCCccccCc-hhhhccCCCccEEEEecCCccccccccccccccccccCCCcceecccccc
Q 039808          215 SFARLRILSVHACPKLKFVFS-SFMIHFMSNLEDLTVEDCPAIEEIISEGEIIDSGCTALPRLKKLTLHYLP  285 (358)
Q Consensus       215 ~~~~L~~L~l~~c~~l~~l~~-~~~l~~l~~L~~L~i~~c~~l~~i~~~~~~~~~~~~~l~~L~~L~l~~c~  285 (358)
                      .+++|++|+++++ +++.+.+ ...+..+++|+.|+++++ .++.+..      .......+|+.|++.+.|
T Consensus        63 ~~~~L~~L~Ls~N-~i~~l~~~~~~~~~l~~L~~L~Ls~N-~i~~l~~------l~~l~~~~L~~L~L~~Np  126 (162)
T d1koha1          63 NIPELLSLNLSNN-RLYRLDDMSSIVQKAPNLKILNLSGN-ELKSERE------LDKIKGLKLEELWLDGNS  126 (162)
T ss_dssp             HCTTCCCCCCCSS-CCCCCSGGGTHHHHSTTCCCCCCTTS-CCCCGGG------HHHHTTCCCSSCCCTTST
T ss_pred             hCCCCCEeeCCCc-cccCCchhHHHHhhCCcccccccccC-ccccchh------hhhhhccccceeecCCCC
Confidence            3566777777665 3444321 123445666666666653 3333321      012233456666665553

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.57  E-value=0.017  Score=44.21  Aligned_cols=35  Identities=23%  Similarity=0.042  Sum_probs=15.7

Q ss_pred             cCCCcceeccccccccccccCC---CCCCccEEeeeCCc
Q 039808          272 ALPRLKKLTLHYLPGLVTIWSS---AWPSLEYVSFYDCP  307 (358)
Q Consensus       272 ~l~~L~~L~l~~c~~L~~~~~~---~~~~L~~L~i~~C~  307 (358)
                      .+++|+.|+++++ .+++++..   ....|+.+++.++|
T Consensus        89 ~l~~L~~L~Ls~N-~i~~l~~l~~l~~~~L~~L~L~~Np  126 (162)
T d1koha1          89 KAPNLKILNLSGN-ELKSERELDKIKGLKLEELWLDGNS  126 (162)
T ss_dssp             HSTTCCCCCCTTS-CCCCGGGHHHHTTCCCSSCCCTTST
T ss_pred             hCCcccccccccC-ccccchhhhhhhccccceeecCCCC
Confidence            3455555555433 34443332   33345555555544

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=82.74  E-value=0.2  Score=37.97  Aligned_cols=113  Identities=10%  Similarity=-0.018  Sum_probs=57.4

Q ss_pred             CCccceeeccccccccccccc--ccCCCcCccccEEeEecCCCccccCc---hhhhccCCCccEEEEecCCccccccccc
Q 039808          189 FPSLENLSIHHLWNLTHICEG--SVPNGSFARLRILSVHACPKLKFVFS---SFMIHFMSNLEDLTVEDCPAIEEIISEG  263 (358)
Q Consensus       189 l~~L~~L~l~~~~~l~~~~~~--~~~~~~~~~L~~L~l~~c~~l~~l~~---~~~l~~l~~L~~L~i~~c~~l~~i~~~~  263 (358)
                      -++|++|.++++..++.--..  .......++|++|++++|. +..-..   ...+...++|++|++++|. +..-..  
T Consensus        14 ~~~L~~L~L~~~~~i~~~~~~~l~~~L~~n~~L~~L~Ls~n~-l~~~~~~~la~~L~~n~~L~~L~L~~n~-i~~~g~--   89 (167)
T d1pgva_          14 DTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTA-ISDSEARGLIELIETSPSLRVLNVESNF-LTPELL--   89 (167)
T ss_dssp             CSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSC-CBHHHHTTHHHHHHHCSSCCEEECCSSB-CCHHHH--
T ss_pred             CCCCcEEEeCCCCCCCHHHHHHHHHHHhhCCccceeeccccc-cchhHHHHHhhhhhhcccccceeeehhh-cchHHH--
Confidence            477888888776544331000  0112344678888888763 332111   1234556788888888773 322100  


Q ss_pred             cccccccccCCCcceeccccccccccccCC----------CCCCccEEeeeCC
Q 039808          264 EIIDSGCTALPRLKKLTLHYLPGLVTIWSS----------AWPSLEYVSFYDC  306 (358)
Q Consensus       264 ~~~~~~~~~l~~L~~L~l~~c~~L~~~~~~----------~~~~L~~L~i~~C  306 (358)
                      ......+..-++|+.|+++++ ....+...          .-++|++|+++..
T Consensus        90 ~~l~~aL~~n~sL~~L~l~~n-~~~~~g~~~~~~l~~~L~~n~sL~~l~l~~~  141 (167)
T d1pgva_          90 ARLLRSTLVTQSIVEFKADNQ-RQSVLGNQVEMDMMMAIEENESLLRVGISFA  141 (167)
T ss_dssp             HHHHHHTTTTCCCSEEECCCC-SSCCCCHHHHHHHHHHHHHCSSCCEEECCCC
T ss_pred             HHHHHHHHhCCcCCEEECCCC-cCCCccHHHHHHHHHHHHhCCCccEeeCcCC
Confidence            000012344567888888654 22222111          3566777766543